{ "graphs": [ { "nodes": [ { "id": "http://purl.obolibrary.org/obo/cemo.owl#case_fatality_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Represents the killing power of a disease, as the ratio of deaths to cases. The time interval is not specified. Not to be confused with mortality rate." } ] }, "type": "CLASS", "lbl": "case fatality rate" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000233", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Ability to identify every single case of disease." } ] }, "type": "CLASS", "lbl": "sensitivity" }, { "id": "http://purl.obolibrary.org/obo/VO_0000247", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Percentage reduction in disease incidence attributable to vaccination." } ] }, "type": "CLASS", "lbl": "vaccine efficacy" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#susceptible_individuals", "type": "CLASS", "lbl": "susceptible individuals" }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_2759", "type": "CLASS", "lbl": "eukaryota" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#time_boundary_of", "type": "PROPERTY", "lbl": "time boundary of" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_laboratory_findings", "type": "CLASS", "lbl": "percentage of laboratory findings" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#non-pharmaceutical_interventions", "type": "CLASS", "lbl": "non-pharmaceutical interventions" }, { "id": "http://purl.obolibrary.org/obo/IAO_0020000", "type": "CLASS", "lbl": "identifier" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#untraceable_contacts", "type": "CLASS", "lbl": "untraceable contacts" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_schools_with_exposure_events", "type": "CLASS", "lbl": "number of schools with exposure events" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000245", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Compares the risk of a health event (disease, injury, risk factor, or death) among one group with the risk among another group. Also called risk ratio." } ] }, "type": "CLASS", "lbl": "relative risk" }, { "id": "http://semanticscience.org/resource/SIO_000011", "type": "PROPERTY", "lbl": "is attribute of" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000568", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A data item that is the output of some infection case count and that represents the number of infectious disease cases that ended in death." } ] }, "type": "CLASS", "lbl": "total number of deaths" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000449", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A period of time that must elapse before those exposed to or attacked by a contagious disease can be considered as incapable respectively of developing or transmitting the disease." } ] }, "type": "CLASS", "lbl": "quarantine period" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_missing_exposure_information", "type": "CLASS", "lbl": "number of cases with missing exposure information" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000569", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A data item that is the output of some infection case count." } ] }, "type": "CLASS", "lbl": "total number of cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#odds_ratio_for_being_an_infected_contact", "type": "CLASS", "lbl": "odds ratio for being an infected contact" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#epidemic_doubling_time", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Time for a given quantity to double in size or number at a constant growth rate." } ] }, "type": "CLASS", "lbl": "epidemic doubling time" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cumulative_excess_mortality", "type": "CLASS", "lbl": "cumulative excess mortality" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#environmental_risk_factor", "type": "CLASS", "lbl": "environmental risk factor" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#interpretation", "type": "CLASS", "lbl": "interpretation" }, { "id": "http://www.ebi.ac.uk/efo/EFO_0004804", "type": "CLASS", "lbl": "birth rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#initial_infection_case", "type": "CLASS", "lbl": "initial infection case" }, { "id": "http://purl.obolibrary.org/obo/NCIT_C67448", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The dose of pathogens received by the exposed individual." } ] }, "type": "CLASS", "lbl": "infectious dose" }, { "id": "http://purl.obolibrary.org/obo/IDO_0001343", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Period of time starting with the establishing of an infection in a host and ending when the host becomes contagious." } ] }, "type": "CLASS", "lbl": "latency period" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_hospitalized_this_week", "type": "CLASS", "lbl": "number of cases hospitalized this week" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_exposed_by_international_travel", "type": "CLASS", "lbl": "number of cases exposed by international travel" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#median_age_of_cases_died", "type": "CLASS", "lbl": "median age of cases died" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000412", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "imported from" }, { "id": "http://purl.obolibrary.org/obo/OBCS_0000064", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "It measures the frequency of all current cases (Old & New) existing during a defined period of time (e.g. annual prevalence) expressed in relation to a defined population." } ] }, "type": "CLASS", "lbl": "period prevalence" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000203", "type": "CLASS", "lbl": "cohort" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#serial_interval", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The time interval between symptom onset in a primary case and a secondary case, which is considered a reasonable approximation of the generation interval and is more practical to observe" } ] }, "type": "CLASS", "lbl": "serial interval" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#daily_deaths", "type": "CLASS", "lbl": "daily deaths" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#total_number_of_cases_ever_hospitalized", "type": "CLASS", "lbl": "total number of cases ever hospitalized" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#descriptive_epidemiology", "type": "CLASS", "lbl": "descriptive epidemiology" }, { "id": "http://purl.obolibrary.org/obo/OAE_0001869", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The rate of population recovering from and infection." } ] }, "type": "CLASS", "lbl": "recovery rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#effective_reproduction_number", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Not all contacts will become infected and the average number of secondary cases per infectious case will be lower than the basic reproduction number. The effective reproductive number (R) is the average number of secondary cases per infectious case in a population made up of both susceptible and non-susceptible hosts." } ] }, "type": "CLASS", "lbl": "effective reproduction number" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#exposure", "type": "CLASS", "lbl": "exposure" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#generation_interval", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The time lag from a primary infection to a secondary infection caused by the primary infection." } ] }, "type": "CLASS", "lbl": "generation interval" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#herd_immunity_threshold", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The proportion of a population that need to be immune in order for an infectious disease to become stable in that community." } ] }, "type": "CLASS", "lbl": "herd immunity threshold" }, { "id": "http://purl.obolibrary.org/obo/RO_0000087", "type": "PROPERTY", "lbl": "has role" }, { "id": "http://purl.obolibrary.org/obo/RO_0000086", "type": "PROPERTY", "lbl": "has quality" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#new_daily_case_rates", "type": "CLASS", "lbl": "new daily case rates" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#proportion_of_cases_attributed_to_travel", "type": "CLASS", "lbl": "proportion of cases attributed to travel" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000482", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Cumulative incidence of infection during a specified period of time." } ] }, "type": "CLASS", "lbl": "incidence proportion" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#left_boundary_of", "type": "PROPERTY", "lbl": "left boundary of" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#epidemiological_core_concepts", "type": "CLASS", "lbl": "epidemiological core concepts" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000484", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "It is the number of new events that occurs in a defined time period in a geographical area." }, { "pred": "http://purl.org/dc/terms/description", "val": "A quality that inheres in an organism population and is the infection incidence proportion per unit time." } ] }, "type": "CLASS", "lbl": "infection incidence rate" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Chronoid", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Chronoids are entities sui generis.\n\nEvery chronoid has exactly two extremal and\ninfinitely many inner time boundaries which are\nequivalently called time-points." } ] }, "type": "CLASS", "lbl": "chronoid" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_tested_specimens", "type": "CLASS", "lbl": "number of tested specimens" }, { "id": "http://purl.obolibrary.org/obo/OBI_0100026", "type": "CLASS", "lbl": "organism" }, { "id": "http://purl.obolibrary.org/obo/OBCS_0000052", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A data item that refers to the number of new events that have occurred in a specific time interval divided by the population at risk at the beginning of the time interval. The result gives the likelihood of developing an event in that time interval." } ] }, "type": "CLASS", "lbl": "incidence proportion ratio" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#hospitalization_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Proportion of confirmed cases that were hospitalized." } ] }, "type": "CLASS", "lbl": "hospitalization rate" }, { "id": "http://purl.obolibrary.org/obo/OBI_0000181", "type": "CLASS", "lbl": "population" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000509", "type": "CLASS", "lbl": "organism population" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#quarantined_cases", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Confirmed and infected cases under quarantine." } ] }, "type": "CLASS", "lbl": "quarantined cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_cases_icu", "type": "CLASS", "lbl": "percentage of cases icu" }, { "id": "http://purl.obolibrary.org/obo/OBI_0000067", "type": "CLASS", "lbl": "evaluant role" }, { "id": "http://purl.obolibrary.org/obo/PATO_0001415", "type": "CLASS", "lbl": "morbidity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#suspected_cases", "type": "CLASS", "lbl": "suspected cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#rate_cases_by_testing", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Percent of positive specimens." } ] }, "type": "CLASS", "lbl": "rate cases by testing" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000030", "type": "CLASS", "lbl": "information content entity" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#has_right_time_boundary", "type": "PROPERTY", "lbl": "has right time boundary" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000511", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Quantity of members of a population that have an infection." } ] }, "type": "CLASS", "lbl": "infected population" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Individual", "type": "CLASS", "lbl": "individual" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#per_capita_mobility", "type": "CLASS", "lbl": "per capita mobility" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000424", "type": "CLASS", "lbl": "risk difference" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Time", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The time model of GFO is based on Brentano and the glass continuum of Allen&Hayes." } ] }, "type": "CLASS", "lbl": "time" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_tests", "type": "CLASS", "lbl": "number of tests" }, { "id": "http://purl.obolibrary.org/obo/OBI_0000070", "type": "CLASS", "lbl": "assay" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Temporal_region", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Time Regions are defined as the mereological sum of chronoids,\ni.e. time regions may consist of non-connected intervals of time." } ] }, "type": "CLASS", "lbl": "temporal region" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#rate_of_community_transmission", "type": "CLASS", "lbl": "rate of community transmission" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#other_indicators", "type": "CLASS", "lbl": "other indicators" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Time_boundary", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Time boundaries depend on a chronoids and can coincide.\n\nLeft time boundaries, if viewed from the perspective of bounding a specific chronoid, are those which are earlier than any inner or right time boundary of that chronoid. On the other hand, within a pair of coincident time boundaries, a left time boundary is later than the right time boundary in that pair.\n\n[FL, 2008-02-27]" } ] }, "type": "CLASS", "lbl": "time boundary" }, { "id": "http://purl.obolibrary.org/obo/RO_0000059", "type": "PROPERTY", "lbl": "concretizes" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Occurrent", "type": "CLASS", "lbl": "occurrent" }, { "id": "http://purl.obolibrary.org/obo/RO_0000057", "type": "PROPERTY", "lbl": "has participant" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000600", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "elucidation" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#infectious_process", "type": "CLASS", "lbl": "infectious process" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000601", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "has associated axiom(nl)" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#median_age_of_cases_hospitalized", "type": "CLASS", "lbl": "median age of cases hospitalized" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_exposed_by_local_one_or_cluster_case", "type": "CLASS", "lbl": "number of cases exposed by local (one or cluster) case" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_cases_died", "type": "CLASS", "lbl": "percentage cases died" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#caused_by", "type": "PROPERTY", "lbl": "caused by" }, { "id": "http://purl.obolibrary.org/obo/GSSO_006827", "type": "CLASS", "lbl": "fertility rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#hospital-wide_nosocomial_infection_rate_per_100_admissions", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A hospital-wide nosocomial infection rate/100 admissions for a given period (month, quarter, or year) is commonly calculated. In this rate, a patient who has two infections is actually counted twice." } ] }, "type": "CLASS", "lbl": "hospital-wide nosocomial infection rate per 100 admissions" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percent_increase_in_mortality", "type": "CLASS", "lbl": "percent increase in mortality" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Processual_Structure", "type": "CLASS", "lbl": "processual structure" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000602", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "has associated axiom(fol)" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#secondary_attack_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Number of exposed persons developing the disease within the range of incubation period following exposure to a primary case." } ] }, "type": "CLASS", "lbl": "secondary attack rate" }, { "id": "http://purl.obolibrary.org/obo/RO_0002234", "type": "PROPERTY", "lbl": "has output" }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_9606", "type": "CLASS", "lbl": "person" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percent_daily_change", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Indicates epidemic growth rate as the median percent change in daily numbers of new cases." } ] }, "type": "CLASS", "lbl": "percent daily change" }, { "id": "http://purl.obolibrary.org/obo/RO_0002351", "type": "PROPERTY", "lbl": "has member" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#median_age_of_cases", "type": "CLASS", "lbl": "median age of cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#growth_rate", "type": "CLASS", "lbl": "growth rate" }, { "id": "http://purl.obolibrary.org/obo/NCIT_C164332", "type": "CLASS", "lbl": "sequence identity of sample" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#right_boundary_of", "type": "PROPERTY", "lbl": "right boundary of" }, { "id": "http://purl.unep.org/sdg/SDGIO_00020030", "type": "CLASS", "lbl": "neonatal mortality rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#rate_of_cases_with_at_least_one_comorbidity", "type": "CLASS", "lbl": "rate of cases with at least one comorbidity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#exposed_contacts", "type": "CLASS", "lbl": "exposed contacts" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#risk_factor", "type": "CLASS", "lbl": "risk factor" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#opportunity", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Number of daily contacts the infected person has; average number of opportunities a person has to spread the infection each day the person is infectious." } ] }, "type": "CLASS", "lbl": "opportunity" }, { "id": "http://purl.obolibrary.org/obo/RO_0002463", "type": "PROPERTY", "lbl": "target participant in" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#male-to-female_ratio", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Male-to-female ratio of confirmed case-patients" } ] }, "type": "CLASS", "lbl": "male-to-female ratio" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#exposed_individuals", "type": "CLASS", "lbl": "exposed individuals" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#predictive_value_positive", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The proportion of reported cases that actually have the health-related event under surveillance." } ] }, "type": "CLASS", "lbl": "predictive value positive (pvp)" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000414", "type": "CLASS", "lbl": "mortality rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#complication_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Proportion of confirmed cases that suffered complications." } ] }, "type": "CLASS", "lbl": "complication rate" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000412", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Ratio formed by the total number of all individuals who have an attribute or disease at a particular time or during a particular period divided by the populations at risk of having the attribute or disease at this point of time or midway through the period." } ] }, "type": "CLASS", "lbl": "prevalence" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#device-specific_rates_and_procedure-specific_rates", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The risk of infection is related to the extrinsic risk factors (use of devices such as ventilator, central line intravascular catheter, urinary catheter, surgical operation)." } ] }, "type": "CLASS", "lbl": "device-specific rates and procedure-specific rates" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#new_daily_death_rates", "type": "CLASS", "lbl": "new daily death rates" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#exposition_interval", "type": "CLASS", "lbl": "exposition interval" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#protection_rate", "type": "CLASS", "lbl": "protection rate" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000109", "type": "CLASS", "lbl": "measurement datum" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000196", "type": "CLASS", "lbl": "confidence interval" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cumulative_case_rates", "type": "CLASS", "lbl": "cumulative case rates" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Concrete", "type": "CLASS", "lbl": "concrete" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#has_left_time_boundary", "type": "PROPERTY", "lbl": "has left time boundary" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000163", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A population of organisms that have been infected, but are no longer able to transmit the disease and to acquire the infection again." } ] }, "type": "CLASS", "lbl": "recovered cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_cases", "type": "CLASS", "lbl": "percentage of cases" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000116", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "editor note" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#length_of_intensive_care_unit_stay", "type": "CLASS", "lbl": "length of icu stay" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000117", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "term editor" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#incidence_of_sever_outcomes", "type": "CLASS", "lbl": "incidence of sever outcomes" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000179", "meta": { "definition": { "val": "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000232", "val": "Really of interest to developers only" } ] }, "type": "PROPERTY", "lbl": "BFO OWL specification label" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000115", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "definition" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000112", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "example of usage" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_cases_which_are_detected", "type": "CLASS", "lbl": "percentage of cases which are detected" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000111", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "editor preferred term" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000232", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "curator note" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000054", "type": "PROPERTY", "lbl": "realized in" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000088", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Statistical sample size is a count evaluating the number of individual experimental units." }, { "pred": "http://purl.org/dc/terms/description", "val": "A population is a group of material entities consisting of individuals which share a particular characteristic such as inhabiting a particular region or area or ability to interbreed." } ] }, "type": "CLASS", "lbl": "study group population size" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000118", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "alternative term" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#reproductive_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Average number of cases that will result from an index case." } ] }, "type": "CLASS", "lbl": "reproductive rate" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000119", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "definition source" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#rate_of_infectious_contacts", "type": "CLASS", "lbl": "rate of infectious contacts" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Left_time_boundary", "type": "CLASS", "lbl": "left time boundary" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_mild_symptoms", "type": "CLASS", "lbl": "number of cases with mild symptoms" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#line_of_infection", "type": "CLASS", "lbl": "line of infection" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_by_testing", "type": "CLASS", "lbl": "number of cases by testing" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000296", "type": "CLASS", "lbl": "case" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#weighted_prevalence", "type": "CLASS", "lbl": "weighted prevalence" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000665", "type": "CLASS", "lbl": "source of infection" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000040", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the undetached arm of a human being" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a puff of smoke" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an epidemic" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a forest fire" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a hurricane" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a flame" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a sea wave" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "material" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a tornado" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an aggregate of human beings." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "MaterialEntity" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an energy wave" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a human being" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a photon" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "material entity" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000003", "type": "CLASS", "lbl": "measurement unit label" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000425", "type": "CLASS", "lbl": "virulence factor" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#prevalence_of_comorbidities_cases", "type": "CLASS", "lbl": "prevalence of comorbidities cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_removed_from_isolation_this_week", "type": "CLASS", "lbl": "number of cases removed from isolation this week" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000009", "type": "CLASS", "lbl": "datum label" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_deaths_new_this_week", "type": "CLASS", "lbl": "number of deaths new this week" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_cases_removed", "type": "CLASS", "lbl": "percentage cases removed" }, { "id": "http://purl.obolibrary.org/obo/TRANS_0000000", "type": "CLASS", "lbl": "transmission" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000140", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Length of time a person may transmit a microorganism; the duration of time a person is infectious" } ] }, "type": "CLASS", "lbl": "infectious period" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_asymptomatic_of_confirmed_cases", "type": "CLASS", "lbl": "percentage of asymptomatic of confirmed cases" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000136", "type": "PROPERTY", "lbl": "is about" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000658", "type": "CLASS", "lbl": "host exposure to infectious agent" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000519", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The time that passes between being exposed to something that can cause disease (such as radiation or a virus) and having symptoms." } ] }, "type": "CLASS", "lbl": "incubation period" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#relative_change_in_new_infections", "type": "CLASS", "lbl": "relative change in new infections" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000182", "type": "CLASS", "lbl": "odds ratio" }, { "id": "http://www.orpha.net/ORDO/Orphanet_409966", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Type of prevalence where the data have been collected for one point of time." } ] }, "type": "CLASS", "lbl": "point prevalence" }, { "id": "http://purl.obolibrary.org/obo/OGMS_0000031", "type": "CLASS", "lbl": "disease" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Space", "type": "CLASS", "lbl": "space" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#new_daily_cases", "type": "CLASS", "lbl": "new daily cases" }, { "id": "http://purl.obolibrary.org/obo/RO_0002536", "type": "PROPERTY", "lbl": "has unit" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cases_by_exposure_in_a_healthcare_setting", "type": "CLASS", "lbl": "cases by exposure in a healthcare setting" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000180", "meta": { "definition": { "val": "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000232", "val": "Really of interest to developers only" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000119", "val": "Person:Alan Ruttenberg" } ] }, "type": "PROPERTY", "lbl": "BFO CLIF specification label" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000182", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "History" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "history" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "natural history" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Right_time_boundary", "type": "CLASS", "lbl": "right time boundary" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000027", "type": "CLASS", "lbl": "data item" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#points_of_interest", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Number of points of interets within a geographical area." } ] }, "type": "CLASS", "lbl": "points of interest (pois)" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000019", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the shape of your nose" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the mass of this piece of gold." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the color of a tomato" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "quality" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the length of the circumference of your waist" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the ambient temperature of this portion of air" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Quality" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] " }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the shape of your nostril" } ] }, "type": "CLASS", "lbl": "quality" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_currently_in_hospital", "type": "CLASS", "lbl": "number of cases currently in hospital" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000015", "meta": { "definition": { "val": "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the life of an organism" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the flight of a bird" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "process" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a process of cell-division, \\ a beating of the heart" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a process of meiosis" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Process" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a process of sleeping" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "your process of aging." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the course of a disease" } ] }, "type": "CLASS", "lbl": "process" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000016", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "disposition" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "children are innately disposed to categorize objects in certain ways." }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Disposition" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "certain people have a predisposition to colon cancer" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an atom of element X has the disposition to decay to an atom of element Y" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" } ] }, "type": "CLASS", "lbl": "disposition" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000017", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the disposition of your blood to coagulate" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the disposition of this piece of metal to conduct electricity." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "realizable" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "RealizableEntity" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of being a doctor" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the function of your reproductive organs" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of this boundary to delineate where Utah and Colorado meet" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "realizable entity" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000018", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ZeroDimensionalSpatialRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "0d-s-region" } ] }, "type": "CLASS", "lbl": "zero-dimensional spatial region" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#distribution", "type": "CLASS", "lbl": "distribution" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Space_time", "type": "CLASS", "lbl": "space time entity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_currently_in_icu", "type": "CLASS", "lbl": "number of cases currently in icu" }, { "id": "http://purl.obolibrary.org/obo/VIDO_0001331", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Numerical expression of the quantity of virus in a given volume of fluid." } ] }, "type": "CLASS", "lbl": "viral load" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#period_from_infectious_to_confirmed", "type": "CLASS", "lbl": "period from infectious to confirmed" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000002", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The measure (R0) of the transmission potential of a disease such that the infection will be able to start spreading in a population or not. It is the average number of secondary infections produced by a typical case of an infection in a population where everyone is susceptible." } ] }, "type": "CLASS", "lbl": "basic reproduction number" }, { "id": "http://purl.obolibrary.org/obo/NCIT_C17734", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Population groups with an increased likelihood of a disease or other health issue" } ] }, "type": "CLASS", "lbl": "at-risk population" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000011", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the spatiotemporal region occupied by a process of cellular meiosis." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "st-region" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the spatiotemporal region occupied by a human life" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the spatiotemporal region occupied by the development of a cancer tumor" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every spatiotemporal region occupies_spatiotemporal_region itself." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "SpatiotemporalRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])" } ] }, "type": "CLASS", "lbl": "spatiotemporal region" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cluster_size", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Number of cases of a disease or another health-related condition, closely grouped in time and place." } ] }, "type": "CLASS", "lbl": "cluster size" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000008", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "TemporalRegion" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "t-region" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])" } ] }, "type": "CLASS", "lbl": "temporal region" }, { "id": "http://purl.obolibrary.org/obo/COVOC_0010003", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Any person meeting the laboratory criteria for COVID-19." } ] }, "type": "CLASS", "lbl": "confirmed cases" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000009", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "TwoDimensionalSpatialRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the surface of a sphere-shaped part of space" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] " }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an infinitely thin plane in space." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "2d-s-region" } ] }, "type": "CLASS", "lbl": "two-dimensional spatial region" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000004", "meta": { "definition": { "val": "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a spatial region" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the bottom right portion of a human torso" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "ic" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a leg" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "IndependentContinuant" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an orchestra." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an atom" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of your mouth" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a chair" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an organism" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a molecule" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a heart" } ] }, "type": "CLASS", "lbl": "independent continuant" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#onset_of_symptom_to_hospitalization", "type": "CLASS", "lbl": "onset of symptom to hospitalization" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000006", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Spatial regions do not participate in processes." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "SpatialRegion" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "s-region" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional." } ] }, "type": "CLASS", "lbl": "spatial region" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#daily_cases", "type": "CLASS", "lbl": "daily cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_exposure_events", "type": "CLASS", "lbl": "number of cases with exposure events" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_active_cases", "type": "CLASS", "lbl": "number of active cases" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cumulative_cases", "type": "CLASS", "lbl": "cumulative cases" }, { "id": "http://purl.obolibrary.org/obo/IAO_0010000", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/iao.owl" } ] }, "type": "PROPERTY", "lbl": "has axiom label" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters", "type": "CLASS", "lbl": "quantitative quality" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000463", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Likelihood any contact passes on an exposure." } ] }, "type": "CLASS", "lbl": "transmission probability" }, { "id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000497", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "A count of individuals in a population who meet the criteria of some case definition during some time interval." } ] }, "type": "CLASS", "lbl": "number of cases new this week" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000467", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Average susceptibility of the population; the share of the population capable of being infected." } ] }, "type": "CLASS", "lbl": "susceptibility" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000001", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "Julius Caesar" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "Verdi’s Requiem" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "entity" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Entity" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "your body mass index" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the Second World War" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" } ] }, "type": "CLASS", "lbl": "entity" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000002", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "continuant" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Continuant" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" } ] }, "type": "CLASS", "lbl": "continuant" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000586", "type": "CLASS", "lbl": "infection" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000003", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "occurrent" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Occurrent" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." } ] }, "type": "CLASS", "lbl": "occurrent" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000466", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The ratio of the number of cases of the disease in relation to the total number of individuals infected; a quality that inheres in an infectious agent and is the degree to which realizations of the infectious disease caused by the infectious agent become severe or fatal." } ] }, "type": "CLASS", "lbl": "virulence" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Event", "type": "CLASS", "lbl": "event" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#positive_contacts", "type": "CLASS", "lbl": "positive contacts" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#projects_to", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Links an entity to its temporal extension.\nEntities which are in time are related to the corresponding temporal regions by projects to. Moreover, entities related to others which are in time may likewise project to temporal regions.\n[FL, 2008-02-28]" } ] }, "type": "PROPERTY", "lbl": "projects to" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000134", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "The probability that a test will produce a true negative result when used on non-effected subjects as compared to a reference or \"gold standard\". The specificity of a test can be determined by calculating: number of true negative results divided by the sum of true negative results plus number of false positive results." } ] }, "type": "CLASS", "lbl": "diagnostic specificity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#percentage_cases_female_sex", "type": "CLASS", "lbl": "percentage cases female sex" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000038", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "OneDimensionalTemporalRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the temporal region during which a process occurs." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "1d-t-region" } ] }, "type": "CLASS", "lbl": "one-dimensional temporal region" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#critical_vaccination_coverage", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Vaccination effort needed to eliminate an infection from a population." } ] }, "type": "CLASS", "lbl": "critical vaccination coverage" }, { "id": "http://purl.obolibrary.org/obo/OGMS_0000063", "type": "CLASS", "lbl": "line of disease" }, { "id": "http://purl.obolibrary.org/obo/NCIT_C164607", "type": "CLASS", "lbl": "gene sequence identity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#testing_rate", "type": "CLASS", "lbl": "testing rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#infection_fatality_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Represents the proportion of deaths among all infected individuals, including all asymptomatic and undiagnosed subjects." } ] }, "type": "CLASS", "lbl": "infection fatality rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#initial_exposed_case", "type": "CLASS", "lbl": "initial exposed case" }, { "id": "http://purl.obolibrary.org/obo/has_confidence_level", "type": "PROPERTY", "lbl": "has confidence level" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_school_exposure_events", "type": "CLASS", "lbl": "number of cases with school exposure events" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#prevalence_of_sars-cov-2_seropositivity", "type": "CLASS", "lbl": "prevalence of sars-cov-2 seropositivity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#duration_of_infection", "type": "CLASS", "lbl": "duration of infection" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#host_risk_factor", "type": "CLASS", "lbl": "host risk factor" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_no_symptoms", "type": "CLASS", "lbl": "number of cases with no symptoms" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000034", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "function" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the function of a hammer to drive in nails" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the function of amylase in saliva to break down starch into sugar" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the function of a heart pacemaker to regulate the beating of a heart through electricity" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Function" } ] }, "type": "CLASS", "lbl": "function" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000035", "meta": { "definition": { "val": "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ProcessBoundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the boundary between the 2nd and 3rd year of your life." }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "p-boundary" } ] }, "type": "CLASS", "lbl": "process boundary" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#average_rate_of_infectious_contacts", "type": "CLASS", "lbl": "average rate of infectious contacts" }, { "id": "http://purl.obolibrary.org/obo/STATO_0000129", "type": "PROPERTY", "lbl": "has value" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000030", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "planet" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "object" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "organism" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Object" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "atom" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "molecule" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "engineered artifacts" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "organelle" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "grain of sand" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "star" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "cell" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: an object is a maximal causally unified material entity" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "solid portions of matter" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "cells and organisms" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "object" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000031", "meta": { "definition": { "val": "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule." }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "gdc" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "GenericallyDependentContinuant" } ] }, "type": "CLASS", "lbl": "generically dependent continuant" }, { "id": "http://purl.obolibrary.org/obo/IDO_0000458", "type": "CLASS", "lbl": "contagiousness" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#etiology", "type": "CLASS", "lbl": "etiology" }, { "id": "http://purl.obolibrary.org/obo/IAO_0000219", "type": "PROPERTY", "lbl": "denotes" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000147", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ZeroDimensionalContinuantFiatBoundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the geographic North Pole" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the point of origin of some spatial coordinate system." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "0d-cf-boundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "zero-dimensional continuant fiat boundary" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000026", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an edge of a cube-shaped portion of space." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "1d-s-region" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "OneDimensionalSpatialRegion" } ] }, "type": "CLASS", "lbl": "one-dimensional spatial region" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000027", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a swarm of bees is an aggregate of members who are linked together through natural bonds" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "defined through physical attachment: the aggregate of atoms in a lump of granite" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a symphony orchestra" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "your collection of Meissen ceramic plates." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "defined by fiat: the aggregate of members of an organization" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "defined via attributive delimitations such as: the patients in this hospital" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the aggregate of blood cells in your body" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the aggregate of bearings in a constant velocity axle joint" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "object-aggregate" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000119", "val": "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ObjectAggregate" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the restaurants in Palo Alto" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a collection of cells in a blood biobank." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the nitrogen atoms in the atmosphere" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee)." } ] }, "type": "CLASS", "lbl": "object aggregate" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000148", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "temporal instant." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ZeroDimensionalTemporalRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the moment at which a finger is detached in an industrial accident" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a temporal region that is occupied by a process boundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the moment at which a child is born" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the moment of death." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "right now" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "0d-t-region" } ] }, "type": "CLASS", "lbl": "zero-dimensional temporal region" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000028", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a cube-shaped region of space" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a sphere-shaped region of space," }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ThreeDimensionalSpatialRegion" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "3d-s-region" } ] }, "type": "CLASS", "lbl": "three-dimensional spatial region" }, { "id": "http://purl.obolibrary.org/obo/OBI_0000011", "type": "CLASS", "lbl": "planned process" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000029", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the Piazza San Marco" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the lumen of your gut" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "Manhattan Canyon)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of your office" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of your bedroom" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "an air traffic control region defined in the airspace above an airport" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the Grand Canyon" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a rabbit hole" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "your left nostril (a fiat part – the opening – of your left nasal cavity)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the hold of a ship" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "site" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a hole in the interior of a portion of cheese" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of a kangaroo pouch" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of the trunk of your car" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the cockpit of an aircraft" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Site" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the interior of your refrigerator" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "site" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#average_daily_number_of_new_infections_generated_per_case_rt", "type": "CLASS", "lbl": "average daily number of new infections generated per case (rt)" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#attack_rate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Number of new cases of a specified disease during a specified time interval per 100 populations at risk during the same time interval." } ] }, "type": "CLASS", "lbl": "attack rate" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#hospital-wide_patient_infection_rate_per_100_admissions", "meta": { "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/description", "val": "Hospital-wide patient infection rate/100 admissions are used to avoid the pitfall of multiple infections in the same patient. This rate may be calculated for a given period: month, quarter, and year. In this rate, a patient with two infections is counted only once." } ] }, "type": "CLASS", "lbl": "hospital-wide patient infection rate per 100 admissions" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#undetected_cases", "type": "CLASS", "lbl": "undetected cases" }, { "id": "http://www.onto-med.de/ontologies/gfo.owl#Process", "type": "CLASS", "lbl": "process" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000144", "meta": { "definition": { "val": "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ProcessProfile" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "process-profile" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance." } ] }, "type": "CLASS", "lbl": "process profile" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000023", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of a stone in marking a property boundary" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "Role" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the student role" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of a building in serving as a military target" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of subject in a clinical trial" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "role" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the priest role" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of a boundary to demarcate two neighboring administrative territories" } ] }, "type": "CLASS", "lbl": "role" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000145", "meta": { "definition": { "val": "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "r-quality" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "RelationalQuality" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "a marriage bond, an instance of requited love, an obligation between one person and another." }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "relational quality" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000024", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "fiat-object-part" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the division of the planet into hemispheres" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the Western hemisphere of the Earth" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the dorsal and ventral surfaces of the body" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the upper and lower lobes of the left lung" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "FiatObjectPart" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the division of the brain into regions" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the FMA:regional parts of an intact human body." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29" } ] }, "type": "CLASS", "lbl": "fiat object part" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000146", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "2d-cf-boundary" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "TwoDimensionalContinuantFiatBoundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] " } ] }, "type": "CLASS", "lbl": "two-dimensional continuant fiat boundary" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000140", "meta": { "definition": { "val": "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "cf-boundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000601", "val": "Every continuant fiat boundary is located at some spatial region at every time at which it exists" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ContinuantFiatBoundary" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] " }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions." } ] }, "type": "CLASS", "lbl": "continuant fiat boundary" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000020", "meta": { "definition": { "val": "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])", "xrefs": [] }, "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "of one-sided specifically dependent continuants: the mass of this tomato" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the disposition of this fish to decay" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] " }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the pink color of a medium rare piece of grilled filet mignon at its center" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the smell of this portion of mozzarella" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the function of this heart: to pump blood" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the shape of this hole." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the mutual dependence of proton donors and acceptors in chemical reactions [79" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "SpecificallyDependentContinuant" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the role of being a doctor" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "sdc" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ] }, "type": "CLASS", "lbl": "specifically dependent continuant" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000141", "meta": { "basicPropertyValues": [ { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "ImmaterialEntity" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "immaterial" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" } ] }, "type": "CLASS", "lbl": "immaterial entity" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#total_number_of_cases_removed_from_isolation", "type": "CLASS", "lbl": "total number of cases removed from isolation" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_exposed_by_local_unknown_exposure", "type": "CLASS", "lbl": "number of cases exposed by local unknown exposure" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000142", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the median sulcus of your tongue" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "all lines of latitude and longitude" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "The Equator" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000600", "val": "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "all geopolitical boundaries" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000602", "val": "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] " }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000179", "val": "1d-cf-boundary" }, { "pred": "http://purl.obolibrary.org/obo/BFO_0000180", "val": "OneDimensionalContinuantFiatBoundary" } ] }, "type": "CLASS", "lbl": "one-dimensional continuant fiat boundary" }, { "id": "http://purl.obolibrary.org/obo/cemo.owl#cumulative_death_rates", "type": "CLASS", "lbl": "cumulative death rates" } ], "edges": [ { "sub": "http://purl.obolibrary.org/obo/BFO_0000018", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000006" }, { "sub": "http://purl.obolibrary.org/obo/OBI_0000181", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#environmental_risk_factor", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#risk_factor" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_with_exposure_events", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#positive_contacts", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/NCIT_C164332", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/OBCS_0000052", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#new_daily_death_rates", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IAO_0000009", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/IAO_0000030" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Space_time", "pred": "is_a", "obj": "http://www.onto-med.de/ontologies/gfo.owl#Individual" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000146", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000140" }, { "sub": "http://purl.obolibrary.org/obo/OGMS_0000031", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#interpretation" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#cumulative_excess_mortality", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#total_number_of_cases_removed_from_isolation", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_cases", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#descriptive_epidemiology", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#epidemiological_core_concepts" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#critical_vaccination_coverage", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#average_rate_of_infectious_contacts", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Time", "pred": "is_a", "obj": "http://www.onto-med.de/ontologies/gfo.owl#Space_time" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000009", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000006" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_hospitalized_this_week", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#percentage_cases_died", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#untraceable_contacts", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#number_of_tests", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Left_time_boundary", "pred": "is_a", "obj": "http://www.onto-med.de/ontologies/gfo.owl#Time_boundary" }, { "sub": "http://purl.obolibrary.org/obo/PATO_0001415", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#initial_exposed_case", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IAO_0000027", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/IAO_0000030" }, { "sub": "http://purl.obolibrary.org/obo/STATO_0000203", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#interpretation" }, { "sub": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000031" }, { "sub": "http://purl.obolibrary.org/obo/OBI_0000181", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#interpretation" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#number_of_cases_currently_in_hospital", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#new_daily_cases", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IDO_0000425", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#interpretation" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#cases_by_exposure_in_a_healthcare_setting", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.unep.org/sdg/SDGIO_00020030", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IDO_0000509", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000027" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000027", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000006", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000141" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub": "http://purl.obolibrary.org/obo/NCBITaxon_9606", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#descriptive_epidemiology" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Process", "pred": "http://www.onto-med.de/ontologies/gfo.owl#projects_to", "obj": "http://purl.obolibrary.org/obo/BFO_0000008" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#right_boundary_of", "pred": "subPropertyOf", "obj": "http://www.onto-med.de/ontologies/gfo.owl#time_boundary_of" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#proportion_of_cases_attributed_to_travel", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#health_systems_indicators", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#other_indicators" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#rate_of_infectious_contacts", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IDO_0000519", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_cases_icu", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#rate_of_community_transmission", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#percentage_of_asymptomatic_of_confirmed_cases", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/IDO_0000463", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#undetected_cases", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#hospital-wide_patient_infection_rate_per_100_admissions", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/APOLLO_SV_00000449", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Event", "pred": "is_a", "obj": "http://www.onto-med.de/ontologies/gfo.owl#Occurrent" }, { "sub": "http://purl.obolibrary.org/obo/BFO_0000141", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#rate_cases_by_testing", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#hospital-wide_nosocomial_infection_rate_per_100_admissions", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#quantitative_parameters" }, { "sub": "http://purl.obolibrary.org/obo/cemo.owl#risk_factors_indicators", "pred": "is_a", "obj": "http://purl.obolibrary.org/obo/cemo.owl#health_status_indicators" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#Concrete", "pred": "is_a", "obj": "http://www.onto-med.de/ontologies/gfo.owl#Individual" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#has_right_time_boundary", "pred": "inverseOf", "obj": "http://www.onto-med.de/ontologies/gfo.owl#right_boundary_of" }, { "sub": "http://www.onto-med.de/ontologies/gfo.owl#has_left_time_boundary", "pred": "inverseOf", "obj": 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