{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import ipycytoscape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import json\n",
    "with open(\"geneData.json\") as fi:\n",
    "    d = json.load(fi)\n",
    "with open(\"geneStyle.json\") as fi:\n",
    "    s = json.load(fi)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj = ipycytoscape.CytoscapeWidget(elements=d)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj.set_layout(name = 'cola',\n",
    "                      nodeSpacing = 5,\n",
    "                      edgeLengthVal = 45,\n",
    "                      animate = True,\n",
    "                      randomize = False,\n",
    "                      maxSimulationTime = 1500)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj.set_style(s)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# edits graph directly \n",
    "\n",
    "cytoscapeobj.set_layout(edgeLengthVal=30)\n",
    "cytoscapeobj.get_layout()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# connects a slider to the nodeSpacing of the graph\n",
    "\n",
    "import ipywidgets as widgets\n",
    "\n",
    "node_range = widgets.IntSlider()\n",
    "output = widgets.Output()\n",
    "display(node_range, output)\n",
    "\n",
    "def on_value_change(change):\n",
    "    with output:\n",
    "        cytoscapeobj.set_layout(nodeSpacing = node_range.value)\n",
    "\n",
    "node_range.observe(on_value_change)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.8.1"
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 },
 "nbformat": 4,
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}