{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Pandas"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "df = pd.read_csv(\"https://raw.githubusercontent.com/nextstrain/ncov/fe5a7ed1f92af63d6d1d43d0307e4b2620108aaa/data/metadata.tsv\", sep = '\\t')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "from ipycytoscape import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['strain', 'virus', 'gisaid_epi_isl', 'genbank_accession', 'date',\n",
       "       'region', 'country', 'division', 'location', 'region_exposure',\n",
       "       'country_exposure', 'division_exposure', 'segment', 'length', 'host',\n",
       "       'age', 'sex', 'originating_lab', 'submitting_lab', 'authors', 'url',\n",
       "       'title', 'date_submitted'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "df.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj = CytoscapeWidget()\n",
    "cytoscapeobj.set_tooltip_source('name')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj.graph.add_graph_from_df(df[:30], ['country'], ['age', 'virus'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "f837500ad4884fca906edaf1c373d317",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "CytoscapeWidget(cytoscape_layout={'name': 'cola'}, cytoscape_style=[{'selector': 'node', 'css': {'background-c…"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "cytoscapeobj"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.2"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 4
}