{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Test NetworkX methods"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import ipycytoscape\n",
    "import ipywidgets as widgets\n",
    "import networkx as nx"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj = ipycytoscape.CytoscapeWidget()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "button = widgets.Button(description=\"nx graph\")\n",
    "output = widgets.Output()\n",
    "\n",
    "# Generates a NX graph every time you click the button\n",
    "def on_button_clicked(b):\n",
    "    with output:\n",
    "        cytoscapeobj.graph.add_graph_from_networkx(nx.complete_graph(5))\n",
    "\n",
    "button.on_click(on_button_clicked)\n",
    "widgets.HBox([button, cytoscapeobj])\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Manipulate a graph using NetworkX\n",
    "\n",
    "nx_graph = nx.complete_graph(7)\n",
    "\n",
    "# Using its algorithms\n",
    "nx.shortest_path(nx_graph, 1, 5)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create a new NX graph without using a button\n",
    "\n",
    "cytoscapeobj.graph.add_graph_from_networkx(nx_graph)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Manipulate the NX graph using cytoscape\n",
    "\n",
    "cytoscapeobj.set_layout(name='grid', nodeSpacing=10, edgeLengthVal=10)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj.graph.add_graph_from_networkx(nx.complete_graph(5))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cytoscapeobj.graph"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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