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| check_names | 'check_names' to check plant species names in Wisconsin for typos and synonyms using UWSP herbarium as baseline. |
| cscore_site | 'cscore_site' to calculate C-score for each site. |
| dist_to_df | 'dist_to_df' convert a distance class object or a matrix to a data frame. |
| get_pd_alpha | calculate alpha phylogenetic diversity |
| get_pd_beta | calculate pairwise beta phylogenetic diversity |
| logit_tran | 'logit_tran' to conduct logit-transformation. |
| multiplot | 'multiplot' to put ggplot objects in multiple panels |
| mvpd | calculate MPD and VPD (mean and variance of pairwise distance) |
| panel.cor | 'panel.cor' to plot absolute value of correlations |
| panel.hist | 'panel.hist' to plot absolute value of correlations |
| pcd2 | pairwise site phylogenetic community dissimilarity (PCD) within a community |
| pcd_pred | Predicted PCD with species pool |
| pd2 | Faith's PD |
| phylo_betapart | Phylogenetic beta diversity partition |
| rand_test | Randomization tests |
| rm_site_noobs | 'rm_site_noobs' remove site that has no obsrevations of any species. |
| rm_sp_noobs | 'rm_sp_noobs' remove species that not observed in any site. |
| simpleCap | 'simpleCap' to make the first letter to be upper case. |
| tnrs_match_names_2 | match taxa names with the Open Tree of Life |
| unifrac2 | unifrac |
| var_to_rownames | 'var_to_rownames' convert a column of a data frame to be row name. |
| wide_by_site | Change long table into wide table for each site |
| wide_by_site_rarefy | 'wide_by_site_rarefy' to resample quadrats from survey data |