{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Cookbook: Merging samples or Assemblies" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "ipyrad is designed to allow you to work with your samples in a very modular way. Meaning you can easily split your Assembly objects to group different samples into different runs that apply different parameter settings, and then you can merge them back together later. Similarly, with ipyrad you can easily merge multiple samples into a single sample, which may be useful when you include technical replicates in your sequencing lanes, or sequence an individual on multiple lanes. " ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import ipyrad as ip" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Merging assemblies\n", "This will combine all samples from the two assemblies into a single assembly. If some samples have the same name in both assemblies they will be merged into one sample in the merged assembly." ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "New Assembly: data1\n", "establishing parallel connection:\n", "Assembly: data1\n", "[####################] 100% 0:00:06 | sorting reads | s1 |\n", "[####################] 100% 0:00:01 | writing/compressing | s1 |\n", "New Assembly: data2\n", "establishing parallel connection:\n", "Assembly: data2\n", "[####################] 100% 0:00:05 | sorting reads | s1 |\n", "[####################] 100% 0:00:01 | writing/compressing | s1 |\n", "New Assembly: alldata\n", "establishing parallel connection:\n", "Assembly: alldata\n", "[####################] 100% 0:00:01 | concatenating inputs | s2 |\n", "[####################] 100% 0:00:08 | processing reads | s2 |\n", "[####################] 100% 0:00:00 | indexing reference | s3 |\n", "[####################] 100% 0:00:00 | concatenating | s3 |\n", "[####################] 100% 0:00:03 | join unmerged pairs | s3 |\n", "[####################] 100% 0:00:03 | dereplicating | s3 |\n", "[####################] 100% 0:00:00 | splitting dereps | s3 |\n", "[####################] 100% 0:00:04 | mapping reads | s3 |\n", "[####################] 100% 0:00:06 | building clusters | s3 |\n", "[####################] 100% 0:00:00 | calc cluster stats | s3 |\n", "[####################] 100% 0:00:03 | inferring [H, E] | s4 |\n", "[####################] 100% 0:00:00 | calculating depths | s5 |\n", "[####################] 100% 0:00:00 | chunking clusters | s5 |\n", "[####################] 100% 0:00:21 | consens calling | s5 |\n", "[####################] 100% 0:00:02 | indexing alleles | s5 |\n", "[####################] 100% 0:00:00 | concatenating bams | s6 |\n", "[####################] 100% 0:00:00 | fetching regions | s6 |\n", "[####################] 100% 0:00:00 | building loci | s6 |\n", "[####################] 100% 0:00:03 | applying filters | s7 |\n", "[####################] 100% 0:00:02 | building arrays | s7 |\n", "[####################] 100% 0:00:00 | writing conversions | s7 |\n", "[####################] 100% 0:00:01 | indexing vcf depths | s7 |\n", "[####################] 100% 0:00:01 | writing vcf output | s7 |\n" ] } ], "source": [ "# demux first lane of data\n", "data1 = ip.Assembly(\"data1\")\n", "data1.params.raw_fastq_path = \"./ipsimdata/pairddrad_example_R*.gz\"\n", "data1.params.barcodes_path = \"./ipsimdata/pairddrad_example_barcodes.txt\"\n", "data1.params.assembly_method = \"reference\"\n", "data1.params.reference_sequence = \"./ipsimdata/pairddrad_example_genome.fa\"\n", "data1.params.datatype = \"pairddrad\"\n", "data1.run('1', force=True, launch_client=True)\n", "\n", "# demux second lane of data\n", "data2 = ip.Assembly(\"data2\")\n", "data2.params.raw_fastq_path = \"./ipsimdata/pairddrad_example_R*.gz\"\n", "data2.params.barcodes_path = \"./ipsimdata/pairddrad_example_barcodes.txt\"\n", "data2.params.assembly_method = \"reference\"\n", "data2.params.reference_sequence = \"./ipsimdata/pairddrad_example_genome.fa\"\n", "data2.params.datatype = \"pairddrad\"\n", "data2.run('1', force=True, launch_client=True)\n", "\n", "# merge assemblies\n", "mdata = ip.merge(\"alldata\", [data1, data2])\n", "mdata.run(\"234567\", force=True, launch_client=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Merge samples\n", "Sometimes you may wish to merge samples within an Assembly. This can be done like below. " ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "New Assembly: data1\n", "establishing parallel connection:\n", "Assembly: data1\n", "[####################] 100% 0:00:04 | sorting reads | s1 |\n", "[####################] 100% 0:00:01 | writing/compressing | s1 |\n" ] } ], "source": [ "# demux first lane of data\n", "data1 = ip.Assembly(\"data1\")\n", "data1.params.raw_fastq_path = \"./ipsimdata/rad_example_R1_.fastq.gz\"\n", "data1.params.barcodes_path = \"./ipsimdata/rad_example_barcodes.txt\"\n", "data1.run('1', force=True, launch_client=True)" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "New Assembly: merged\n", "establishing parallel connection:\n", "Assembly: merged\n", "[####################] 100% 0:00:00 | concatenating inputs | s2 |\n", "[####################] 100% 0:00:03 | processing reads | s2 |\n", "[####################] 100% 0:00:00 | concatenating | s3 |\n", "[####################] 100% 0:00:02 | dereplicating | s3 |\n", "[####################] 100% 0:00:01 | clustering/mapping | s3 |\n", "[####################] 100% 0:00:00 | building clusters | s3 |\n", "[####################] 100% 0:00:00 | chunking clusters | s3 |\n", "[####################] 100% 0:00:07 | aligning clusters | s3 |\n", "[####################] 100% 0:00:00 | concat clusters | s3 |\n", "[####################] 100% 0:00:00 | calc cluster stats | s3 |\n", "[####################] 100% 0:00:03 | inferring [H, E] | s4 |\n", "[####################] 100% 0:00:00 | calculating depths | s5 |\n", "[####################] 100% 0:00:00 | chunking clusters | s5 |\n", "[####################] 100% 0:00:10 | consens calling | s5 |\n", "[####################] 100% 0:00:00 | indexing alleles | s5 |\n", "[####################] 100% 0:00:00 | concatenating inputs | s6 |\n", "[####################] 100% 0:00:00 | clustering across | s6 |\n", "[####################] 100% 0:00:00 | building clusters | s6 |\n", "[####################] 100% 0:00:08 | aligning clusters | s6 |\n", "[####################] 100% 0:00:02 | applying filters | s7 |\n", "[####################] 100% 0:00:02 | building arrays | s7 |\n", "[####################] 100% 0:00:00 | writing conversions | s7 |\n", "[####################] 100% 0:00:00 | indexing vcf depths | s7 |\n", "[####################] 100% 0:00:01 | writing vcf output | s7 |\n" ] }, { "data": { "text/html": [ "
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statereads_rawreads_passed_filterclusters_totalclusters_hidepthhetero_esterror_estreads_consens
2E_062001720017100010000.0018300.0007661000
2F_061993319933100010000.0019960.0007551000
2G_062003020030100010000.0019400.0007631000
2H_062019920199100010000.0017470.0007561000
3I_061988519885100010000.0018070.0007581000
3J_061982219822100010000.0019310.0007761000
3K_061996519965100010000.0020920.0007661000
3L_062000820008100010000.0020420.0007481000
A66004160041100010000.0098260.0008331000
D61996619966100010000.0018030.0007611000
\n", "
" ], "text/plain": [ " state reads_raw reads_passed_filter clusters_total clusters_hidepth \\\n", "2E_0 6 20017 20017 1000 1000 \n", "2F_0 6 19933 19933 1000 1000 \n", "2G_0 6 20030 20030 1000 1000 \n", "2H_0 6 20199 20199 1000 1000 \n", "3I_0 6 19885 19885 1000 1000 \n", "3J_0 6 19822 19822 1000 1000 \n", "3K_0 6 19965 19965 1000 1000 \n", "3L_0 6 20008 20008 1000 1000 \n", "A 6 60041 60041 1000 1000 \n", "D 6 19966 19966 1000 1000 \n", "\n", " hetero_est error_est reads_consens \n", "2E_0 0.001830 0.000766 1000 \n", "2F_0 0.001996 0.000755 1000 \n", "2G_0 0.001940 0.000763 1000 \n", "2H_0 0.001747 0.000756 1000 \n", "3I_0 0.001807 0.000758 1000 \n", "3J_0 0.001931 0.000776 1000 \n", "3K_0 0.002092 0.000766 1000 \n", "3L_0 0.002042 0.000748 1000 \n", "A 0.009826 0.000833 1000 \n", "D 0.001803 0.000761 1000 " ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# the rename dictionary is applied during merge\n", "mergedict = {\n", " \"1A_0\": \"A\", \n", " \"1B_0\": \"A\", \n", " \"1C_0\": \"A\",\n", " \"1D_0\": \"D\",\n", "}\n", "merged = ip.merge(\"merged\", data1, rename_dict=mergedict)\n", "merged.run(\"234567\", force=True, launch_client=True)\n", "merged.stats" ] }, { "cell_type": "code", "execution_count": 104, "metadata": {}, "outputs": [], "source": [ "from ipyrad.assemble.write_outputs import *\n", "import ipyparallel as ipp\n", "ipyclient = ipp.Client()\n", "step = Step7(merged, True, ipyclient)" ] }, { "cell_type": "code", "execution_count": 105, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[####################] 100% 0:00:03 | applying filters | s7 |\n", "[####################] 100% 0:00:01 | building arrays | s7 |\n", "[####################] 100% 0:00:00 | writing conversions | s7 |\n" ] } ], "source": [ "step.split_clusters()\n", "step.remote_process_chunks()\n", "step.collect_stats()\n", "step.store_file_handles()\n", "step.remote_build_arrays_and_write_loci()\n", "step.remote_write_outfiles()" ] }, { "cell_type": "code", "execution_count": 106, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[####################] 100% 0:00:00 | indexing vcf depths | s7 |\n" ] } ], "source": [ "step.remote_fill_depths()" ] }, { "cell_type": "code", "execution_count": 107, "metadata": { "scrolled": true }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[####################] 100% 0:00:01 | writing vcf output | s7 |\n" ] } ], "source": [ "step.remote_build_vcf()" ] }, { "cell_type": "code", "execution_count": 91, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "array([[ 2, 1],\n", " [ 2, 74],\n", " [ 2, 84]], dtype=uint32)" ] }, "execution_count": 91, "metadata": {}, "output_type": "execute_result" } ], "source": [ "filler.snpsmap[filler.snpsmap[:, 0] == 2]" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "\n" ] }, { "cell_type": "code", "execution_count": 102, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "idx 0 locidx 0\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 22]\n", "ACTCTCAGGCGTACGATTCGGTACAAGTGTTTTGCTCGTTGGTTGCTTTGACAAACGACGGTATAGCAACGACGAATCATAAGTGT\n", "\n", "idx 0 locidx 1\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 17]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 17 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 17]\n", "GGATTTGGGTCTGGACGGAGCCAGTTAGTTAAAGTCCGTGCCCCCACGGAATAACGGTAAAATATACAAAACATTAAAGCACTTGG\n", "\n", "idx 0 locidx 2\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 18 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[18 0 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 18 0]\n", "ATAAGGGTCTCTTCTAGCAAATCGGCGTGCGCTGATCCTGGAATGTCCGGTTGAAGATATGATTACAGTACAGCGTGCGGCGCTAA\n", "\n", "idx 0 locidx 3\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[19 0 0 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 19]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 19]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 19]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[19 0 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TTACTAAGTGGTTCAAGTGGTTACTGAAGGGATAAGAGACGGGGTCGGAGGCCTCCTGAAATGGGCGGAAAGCTCTCTAACAGGAA\n", "\n", "idx 0 locidx 4\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 15]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 15 0 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 15 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[15 0 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 15 0]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[15 0 0 0]\n", "GTATAACTGAGCGGTGCGCACGAACAGACCTAGAGTTAGACTGAGAAGAAGCACAAGTACTCTTCCAAAGCCGGGGAGGGCCTGCA\n", "\n", "idx 0 locidx 5\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[19 0 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 19 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 19 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 19]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TTATTTAGTATTCAGATCGCGCAACAATCGAGGGTAAATTTCTTCATGCGCCATGCAACGCCCGTATTGCCAAAAGGTGCCGCGAT\n", "\n", "idx 0 locidx 6\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[20 0 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 20]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AGGAGGCCCGTTGCTCCCCCGACAGGATCGTCGTAGCAGAACCTATAACCCCCGCTCACTCTATTTGGCGTACTTGAAGCTTGCCC\n", "\n", "idx 0 locidx 7\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 22 0]\n", "GGTAAGAACCTCACTGAGAGATTATATCCTTTAAGGGGATGATACTCCTGGAGCACACACGGTGCTACGATCGTCTCAAACACGTC\n", "\n", "idx 0 locidx 8\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 21 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[21 0 0 0]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 21]\n", "GCGTCGGGAAGGGCATTCTGGAGGACCAGCGATCTAGGCCCGTCGCGTTCCAATACTAGGCACACGCAGGGTACTCAGCAGCACCA\n", "\n", "idx 0 locidx 9\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 24]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 24 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 24]\n", "TACAAGTTCTCCTATTCCGGCAAAAAGCGGGGCTTAATTCTCGTGTTTCGTCACTGATTCGAGAGCCTAAACTAGTTAAGACTCGC\n", "\n", "idx 0 locidx 10\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 23]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 23 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 23 0]\n", "73 -\n", "78 (73, 5, 5, 0)\n", "[ 0 0 23 0]\n", "77 A\n", "81 (77, 5, 5, 1)\n", "[ 0 23 0 0]\n", "TCATGCCTCGAAGTGCGTTGTCTCCCCCCTCTAGTAGCATTGTAATGGTGCAATTTGATAGTCGTAAATAAAA-TGTAGAGTGGGG\n", "\n", "idx 0 locidx 11\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TAAGGCCGGGCATATTAATCCAAACGAAAGAATTCATAAATTCGTTACTCTAGAGTAGGTCAGGTAGATCTTGATCGAGTGGAACA\n", "\n", "idx 0 locidx 12\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 18 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[18 0 0 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 18 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 18 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[18 0 0 0]\n", "ATTACATACCGCAAACGGTTATTCCCAGGCTACTCTCAGTAGGCGTAATACTGGAGTCACTCTTCTGGCATCGCGCCACTGGAGAC\n", "\n", "idx 0 locidx 13\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 20 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[20 0 0 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 20 0 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 20 0]\n", "TAATGGGCTTGTGATGAGAGCCACAGCAGGAGACTTGCGGTGCCGTTCAAGGCCTCGTTCCGTCCTGCACAGCCCACACGTTACTC\n", "\n", "idx 0 locidx 14\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[22 0 0 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 22 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 22 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 22 0 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[22 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CGTATAATGATCTTAGTGACCTGACTACTGCGGCCACTGCCGCGTAATGATGGTCCAACTCCAAGCGACAGGTTCAGAACCAATCG\n", "\n", "idx 0 locidx 15\n", "18 W\n", "23 (18, 5, 5, 0)\n", "[ 0 10 10 0]\n", "35 A\n", "39 (35, 5, 5, 1)\n", "[ 0 20 0 0]\n", "72 T\n", "76 (72, 5, 5, 1)\n", "[ 0 0 20 0]\n", "78 T\n", "82 (78, 5, 5, 1)\n", "[ 0 0 20 0]\n", "83 G\n", "87 (83, 5, 5, 1)\n", "[ 0 0 0 20]\n", "AACATGAGCATTAAAGTGWATAGAGTATT-CCAACAGTGTGCGTCGATTAAATAAGCACTACTAGCGATGATTATTTATTCGAGCG\n", "\n", "idx 0 locidx 16\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 21 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[21 0 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CCGTTCAAGTGAGTATGTAACAGAACTCAGCAAACACGAGCGCGCTTTCTCAAAGACATGAGCGGAGAGGACACAAGGTCCGCTGA\n", "\n", "idx 0 locidx 17\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 17 0 0]\n", "5 A\n", "10 (5, 5, 5, 0)\n", "[ 0 17 0 0]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 17 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[17 0 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 17 0]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 17 0]\n", "AGCTAACATTTTCAAAGTGCGAGGTCTTACCTGTGCAATCACCCTTAGTTCATACCCGTGTCGACATTGCTTCCGCTATAAGGATT\n", "\n", "idx 0 locidx 18\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[19 0 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GCGATGTACTTAAAACCGTTATTCAGGGGCATCGTTACAATTTACTCCAGTAGCGTCCGTACAACTTGTAAGCCATCGTCTCTGAC\n", "\n", "idx 0 locidx 19\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 17 0 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 17 0 0]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 17 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 17 0]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 17 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 17 0]\n", "GAGATTCACTGGAGGCACGTCAGGTTGATATTGTCTAACGGTGGCCACGTTGCTAATTTTCCCAGATGTTCGTCCATCACTTATAG\n", "\n", "idx 0 locidx 20\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 13 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 13 0]\n", "GGGAGCGATTAGGGCCGTGAACATCTTTCAGGTTCGCGCCCATCTCGGTGTCCGTGTGCTCTGAGTCGACAATGCGATACGCTCTC\n", "\n", "idx 0 locidx 21\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 19 0 0]\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 19]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[19 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 19]\n", "AATACGGGACCACAAGGGAAGCTTGCCCCCCTGCGTCATATCCTGGGACCTGGACCCTACTCTGAGCATTCAGTACGTCGCGGGCT\n", "\n", "idx 0 locidx 22\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 21 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 21]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 21]\n", "GCACGTATTTTATCGCTTAGTATAGTAGAATCGATACCCGTTCACGCAGTGGACGGCCGACCTTCTCTTGTTCGTTTTGATCCCTG\n", "\n", "idx 0 locidx 23\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 19]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 19 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 19]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[19 0 0 0]\n", "TATCGATGTCTGATGCGTCCTTACCAGTAAGATTTTCAGGATAGATGCGGATTACGCCAAGCTACAGTAGTAGGGGTCTGCGCTCA\n", "\n", "idx 0 locidx 24\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 25]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 25]\n", "TAGCAGACGTCCCGATGGAAGGCACACGTACCCCGCTTAGTGAGATTGGCATTAGGACTCTGGATCCGGAGAACTTGACGTTCTGT\n", "\n", "idx 0 locidx 25\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 23]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 23]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 23 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[23 0 0 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[23 0 0 0]\n", "CTAGCGTTTGTTCGGCGCATAGCCTCCCATATCACCGAGTGCTCGATGCGCAAGTGGGACACCTCCCCCCTACGCGGCTCATAAAA\n", "\n", "idx 0 locidx 26\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 17 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 17 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[17 0 0 0]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 17 0]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[17 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 17 0 0]\n", "GTAGAGCTCCACGGCCCTTATGCCGGAGGAGGTCTTAATGACCCCCGAGCACGGCCGTCAATCGTTAAACTAAATAACTCACAGAC\n", "\n", "idx 0 locidx 27\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 18]\n", "TCGGTAATGGTATTAGCACGTCCATTAACCTTTTAAGTTATACGACAGCCAGCGGAGATACAGTCGGAAATGCCCAAATGAAATCG\n", "\n", "idx 0 locidx 28\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[21 0 0 0]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 21 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 21]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CGCTAACGGACTTATTTTGTTACTAAGGGGTGTCCCAGGCTCTTCTCCTGTAGGTCTGAAGCTTCAATGGGCAATGAAATACTCTT\n", "\n", "idx 0 locidx 29\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 24]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 24]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[24 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 24]\n", "TATTCACGTTTTACATCCTTCTGTGATTGGAGTAAATTACAGTCTGCCTCGTTGTATAACTGTGCAAAGCCCGCTACACGAACCAG\n", "\n", "idx 0 locidx 30\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 23]\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 23]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[23 0 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 23 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 23 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[23 0 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TGTGGGCCGGACCCACGTGCTCAGGGCTGCTCGACGCCATTCCGTAGAAAGTCGTGCCCCAAAGTCCGCGTCGCTTCCTAACCATT\n", "\n", "idx 0 locidx 31\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 19]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 19]\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[19 0 0 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 19]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 19 0 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 19 0]\n", "AGAAGGTAACCAGCTGGCTACCACCGGCGCTCTTCTATTCCTACTAGGGACATCTAAGAAAATCTTCTTGCCGGTCAATTTGTGAT\n", "\n", "idx 0 locidx 32\n", "13 T\n", "18 (13, 5, 5, 0)\n", "[ 0 0 20 0]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 20 0]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 20 0 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 20 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 20]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[20 0 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[20 0 0 0]\n", "AGCCACCGTCGAATTAAGTAGGTCTGTATGGGCGAATTGACATTCCCATTACTGCGCCCTAATACCTTTTGCGCAATCAGGGATGA\n", "\n", "idx 0 locidx 33\n", "12 R\n", "17 (12, 5, 5, 0)\n", "[ 0 12 0 9]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 21 0]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 21 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 21 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[21 0 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 21 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[21 0 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AGGAATTACCGCRTTAGCCCTCTACTATATGCATTTATCCGATTAACGCACCTAGAATGACACCCAATTTGGTGCCGTTTCCGGTC\n", "\n", "idx 0 locidx 34\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 21 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 21 0]\n", "52 M\n", "57 (52, 5, 5, 0)\n", "[10 11 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 21 0 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 21 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CTGAACAAACCGGGGATCGTGTGGGTTGCTCCTTAACTCGGGCTCGGTTCTTMTGCGTAGGCTACACCGATCAAAACCAGGTAGCG\n", "\n", "idx 0 locidx 35\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 20]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 20]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 20 0 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 20 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 20]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 20 0 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TGGACGTAGGCATGTGGCAAGCACTACGCACCTACGCCAGAACGCTACTCGCGGGTGTGAAATTACTGTAATACTGGACTATATTC\n", "\n", "idx 0 locidx 36\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 18 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 18 0 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 18]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 18]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 18 0]\n", "AACAAATTGCGCACGACTGCAGAGCCTCTCCACAGGCTGAGCCCTGTGCCATGCTGCACTAAAAGAGTACCGGCGAATCGATCGCA\n", "\n", "idx 0 locidx 37\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 18 0]\n", "10 C\n", "15 (10, 5, 5, 0)\n", "[18 0 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 18 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 18]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 18 0 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 18]\n", "ACTTGGTAATCGAGATTAATGGAAGGTACGCGGGTCTTATCATGGGAGGCCAGATCACATGAAGTGAGGATGTACTACGAGACCAT\n", "\n", "idx 0 locidx 38\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 21 0 0]\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 21 0]\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 21 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[21 0 0 0]\n", "GACATCATGGGGCAGTCTTCTGACGGCGTCCTGACCGGTATTGCGCAACTAAACTTTGGCCCATTTCAATAACACATGAAGCCCCG\n", "\n", "idx 0 locidx 39\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 21]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 21]\n", "24 G\n", "29 (24, 5, 5, 0)\n", "[ 0 0 0 21]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 21 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TTCCGGATCAGGCTGCGCGTTGGGGTGGAATTGGCACGGATCCGTGCGCGGGCTGCAACAATTAGATCCCACTCCGGATCTGCTGG\n", "\n", "idx 0 locidx 40\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[20 0 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 1 0 19 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 20 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 20 0 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 20 0 0]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 20 0 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 20]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[20 0 0 0]\n", "TACTAGTCACAACTTCACTGCGTCCCAATAACTGCCAGTACCCAGCCAGTTTAAGTAAGAGGTCTTGGGACAATGGACGAATGGCC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 0 locidx 41\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 18 0 0]\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 18 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 18 0]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 18 0 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[18 0 0 0]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 18 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GATAGATCGGAAAGGAGATGGAGTGGGGCTGTAGAAGGCCCCTAATTGCATAGCTAAGAACAGTTGAAGCATTCATCTACTAAGGT\n", "\n", "idx 0 locidx 42\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[17 0 0 0]\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 17 0 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 17 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 17 0]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[17 0 0 0]\n", "TTGATTAGAAGAGCATACAGCTCAAGTCCAATGTAGGATGGGGCGTATTAGATGCTACTCCTCCATACACGATCTCTATTGAAGGT\n", "\n", "idx 0 locidx 43\n", "3 M\n", "8 (3, 5, 5, 0)\n", "[9 7 0 0]\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 16]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 16 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 16]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 16 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 16 0 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 16 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 16 0]\n", "CATMAGTAGCTCGAGCCTGGGGAGGAACCTATTCGGGGGTCTCACCGCCTAACCTGCTCTGATTCAAGAAGTGGCCTATCTCCTTT\n", "\n", "idx 0 locidx 44\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 13 0]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 13 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 13 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 13]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[12 1 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[13 0 0 0]\n", "TAAAAGGCACCCCATAACAGATCATGCCGATTATAGTCAACGACTTAGTCAGTAACTTGCGGTTATGGGTCCACAACAAGATTCCG\n", "\n", "idx 0 locidx 45\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[26 0 0 0]\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 1 25 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 26 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 26]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 26 0 0]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 26]\n", "CGAAAAGCTCCGGGGCGGATCAATCTGTCTGTCGACAGCCATAGGTATGTCAACCCGTCGAAGCATACAGAACACCCATAACTACG\n", "\n", "idx 0 locidx 46\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 23]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 23 0]\n", "GACAACGATTTACCCCGCTGATGCGCGCCAAGGCTTATTGTGATTTTCAAGTAAGGTTATAACGTTAGCGCCGCCGTAAGTTTCGC\n", "\n", "idx 0 locidx 47\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 18 0 0]\n", "CTTGGGCAAGAGCAACGTGCCGCTGAGGAGATCAGCTCCTCACCCCCCTTTATCAACCAATTGAGAGACGCGTCCATCGAAACCCC\n", "\n", "idx 0 locidx 48\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 23]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 23]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 23 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 23]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[23 0 0 0]\n", "TCCTATTTGTGACGGTCTAGTACCCGTATCCATGGTTATTTTCTGCAACGCGTATATTGGACGACCCCGGCTGAACTAGATCGTCA\n", "\n", "idx 0 locidx 49\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 21 0 0]\n", "55 S\n", "60 (55, 5, 5, 0)\n", "[10 0 0 11]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TATGAAATCACCGTCCTTCGTACATAAACTGACCCAACGGCTCGCTTGATCGTGCSGCTCTGAGACCGTGCAAACGCGGGTTCCTT\n", "\n", "idx 1 locidx 50\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 19 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 19]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[19 0 0 0]\n", "AGCACAGGTCGAACCCATGCGGTCCTAGGTACCCTGCGTTCATGGGAGTTATCTCATCTCATGCTTTCCGGGTTATTTAAACAGTC\n", "\n", "idx 1 locidx 51\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 24 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 24 0 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[24 0 0 0]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CTTTCCCGTCGTGTCGGAAGACACCTGTAAAGGTCGGAAACAGCCAGATGTGCTTACACAACGCCTGAGGTACGTCGACTTTAGGG\n", "\n", "idx 1 locidx 52\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[21 0 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[21 0 0 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 21 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 21]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[21 0 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TTGAACACTTTAGAAGAAACCTGGTATCCCAATCGACATCATGGGTATGTGGTCCCTATAAGCTCATGCGACCGAGCCATGTCGTA\n", "\n", "idx 1 locidx 53\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 28 0]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 28 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 28 0 0]\n", "AAAGGATGGATTTGGCGCCGACACCTATATTGGCACTGTCTGAGACAATCTCAGCTAAATGTGCCGCGATCTCCTTGAACTTTATC\n", "\n", "idx 1 locidx 54\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 23 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 23 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 23]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 23 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[23 0 0 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 23 0]\n", "CACGAAGTTAACTTCAACCCTCGCCACTACTGCGTACAAAACGCGAGAGGTCTCCATGAGTGTTGCATCCGCTGTGGTGGTTACAT\n", "\n", "idx 1 locidx 55\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 17 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 17]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 17]\n", "AATAACTAGCAGACGGAGAAATTTCATTATTCGGTTTGTCTACAAAAGATTCTTTTTCACTAGTTAGGTCTGGCTGTTCCGATTGC\n", "\n", "idx 1 locidx 56\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 17 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[17 0 0 0]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CATGCTTTAACCAGTTACGCCGACCGATTTGTAGCGAGCTATAATAAAAGTCGCTATTCGGTAACTCTTGCTGCTATATGGTGGAA\n", "\n", "idx 1 locidx 57\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 17]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[17 0 0 0]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 17 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 17 0 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 17 0 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 17 0 0]\n", "GGAGCTAGAAAGGCCGTCGTTAACAAAGTCGGCTCCAAAAGAATAGGTCATGGCACTGTTTAAGAGATATCCAATGTGGCCCTATT\n", "\n", "idx 1 locidx 58\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[22 0 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 22]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 22]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 22 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[22 0 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 22]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CTTTGGCGAGACGAGGCTATTCGTAAAGCAAGTTTATGATACGACCAAAAGTTCCCGAAAGTCACTACGTTGTAGATACACCAGCA\n", "\n", "idx 1 locidx 59\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 23 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[23 0 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 23 0]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 23]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 23]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 23]\n", "GATGGGCGTGCTAGCCGGAGTTTCGCCCAACTTGTAACATGTTCTCTAGGGAATTTTCGATGTTGTAATCCAGAATCAGAAGGTGG\n", "\n", "idx 1 locidx 60\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[16 0 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[16 0 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 16]\n", "GTCCTTGAGGTGACGGCGTCGATTGACAATTGTATCCCAACTGCAGCACCCGTTTGGTATACCGCGTCCCTGAGTATCTGGATCAC\n", "\n", "idx 1 locidx 61\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 21]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 21 0]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[21 0 0 0]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 21 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 21]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GACGAGTGGACTCAACGCTAGCTGCCTTTATCAGCAGTTTTAAAGAAACTATCGTGCCCTCATAGTTGTGTAAGTCTGTGCCAGGC\n", "\n", "idx 1 locidx 62\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 19 0 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[19 0 0 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CCAACCCGGCATCCCATCCGCTCTAGCAGCTGATGTGACAATCTTATTACAGACATCGCTACAGCGGTTATGACCCGTTCGCCTCA\n", "\n", "idx 1 locidx 63\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 17 0 0]\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 17]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 17 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 17]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[17 0 0 0]\n", "GGCGCTGACGGATTTTGCTCAGTTAGACCAGCAATGCTGCCTTGACATACTAAAAAGACTAGCTCCACTCAAATTAGACACGATAA\n", "\n", "idx 1 locidx 64\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 19]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 19 0 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 19 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 19]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CATTGAGATCAGCACGACTAATACCAAGTATCAGGACCATACTGTGAGATGGCCGGAACAGACATGTAAGAATGGGGTTACAGGGA\n", "\n", "idx 1 locidx 65\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 1 0 19]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[20 0 0 0]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GTGGTATGTATATCTCGGCCGGACCTACCACCCGTCTAATATCCACTAAATAGTCCCAGTTGCATGAGCCCAGCCTTGAGAAAAAC\n", "\n", "idx 1 locidx 66\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 23 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 23]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 23 0]\n", "AGATGCACGGTAGCGTTTTGCGAATTGCACACGTTGTGGTTCAGTAAGAGAATCTGACGTGGTCGCTGTGAAATGTAGAACTAGGT\n", "\n", "idx 1 locidx 67\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[22 0 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[22 0 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 22]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[22 0 0 0]\n", "GCGAGCCATACCGTGCCGTAGCGACGAATCAGTTGCTGCTAAAGTGTGAGATATCGGACGGAGGTACTCAATCGTGTGCTCACACA\n", "\n", "idx 1 locidx 68\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "AAATTATGAAATTATGCGAAACTTAAAGACGTATCGGTTGGCAGCGGCACTGCTCCCGAGGAGTCCGTGCCTTTGCCAATAATGCC\n", "\n", "idx 1 locidx 69\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 22]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[22 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[22 0 0 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[22 0 0 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 22 0 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 22 0]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CCACGTTGTGAGCGACTACTCAGCTTCACCTGCTCTCAAGTGAGCCGTCGACCACCTACTGCGTTCGACACTGTGCGAGCGAGCCT\n", "\n", "idx 1 locidx 70\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 23 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 23 0 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 23 0 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 23]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[23 0 0 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CCATCCCTGTGTGGCTACCTATCGAATTGGTAGCGCGTGGGTACTGGACAACTGTGTGTTCTGCTCGTTCCGCATTAGACACACGT\n", "\n", "idx 1 locidx 71\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 22 0 0]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 22 0 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[22 0 0 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CTGCGAATAAACCCATTGGACCCGCACCTACTCGTTACACGAGCAGAATCGCACCTTTAGACAGCGCAGCTGGACATCCCAACGAC\n", "\n", "idx 1 locidx 72\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[23 0 0 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 23]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TATAACAAAGAACTATCAGCATTTGCTACGATCAACGGGATTGGAGCGCAGTTATGTGCTTGTAAGTAGAGTTTGCAGCGGGTATG\n", "\n", "idx 1 locidx 73\n", "66 W\n", "71 (66, 5, 5, 0)\n", "[ 0 12 6 0]\n", "CCCGGTTGCTTCGGGGACTGTGCATCTAATTAATCTGTAGACCTAATGGTACCAGAAGTGTTTTAGWATGATGTGTACATCGTAGT\n", "\n", "idx 1 locidx 74\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 23 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 23]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 23 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TTGAAAGTACCGTATCTGCCTCAGTCCGCGGTCCAAAGCAGATATTTATTTGGGACCACGTTGCGTCCAAATGACGAGAGTCGGAG\n", "\n", "idx 1 locidx 75\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 1 17]\n", "32 K\n", "37 (32, 5, 5, 0)\n", "[ 0 0 8 10]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 18 0 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 18]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CTTACATCAGCTCGGGCACAAAGGCCATCTTGKGGATGTTCGACGAGCTAAATTACTGGATTTGTATCCTCCGAGGATGGACCTTT\n", "\n", "idx 1 locidx 76\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[20 0 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GATAGAGTGGTACGTTTCCACTGCTGTCACTGAGGGGGCGATCTCTTTAGACCTTGCCCAGCACTCTGGCCGGACTAAGAGAGCGT\n", "\n", "idx 1 locidx 77\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 25 0 0]\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 25]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 25 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 25 0 0]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 25 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 25 0]\n", "CGAGCGTTTTCACAGACGCCGTTAAAAGGATCCCTTCGGAATATCCTACCTCTCCTCCAACGCCGCACGTATCGGGCTCTCCTGCT\n", "\n", "idx 1 locidx 78\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 17 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TGAGTCCCCACTTGTTTATCGTGGTGTGCCAATGTGGTGGTGCTTCCCCTCGGCAAGGATCTAGGCGGAGATAACGTACATGCTCA\n", "\n", "idx 1 locidx 79\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 15 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 15 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 15]\n", "CGACCCAAGACGGTGAGGAGGCGAACACCGTTGTAACGTCTTACAGTGTTCGGGGGTATATCAGACACCGCTGACGACTGGGGTCA\n", "\n", "idx 1 locidx 80\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 25 0 0]\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 25 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 25]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 25]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 25 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 25 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 25 0 0]\n", "TGAAATATGCTGCTGATTATGGAGTGCTTGATTTTTTACGGCTTAACGCCTTTCTTCGCCTACCGGGGCGTGCTAGTATGCATTGA\n", "\n", "idx 1 locidx 81\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 26]\n", "CTGTTAGTATACGGCGACGTCTCGTGATTACCCTGGCTCGCGACGTGCTTGTATACCCCATCTTGGTTTGGGTGCAGGCCGCACGC\n", "\n", "idx 1 locidx 82\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 20 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[20 0 0 0]\n", "GTGCTTGGCCACACGTATGTGCGCCTAGCCGCTGACAAGCGAACCTTCCCGAGCACTTGCACCCATTAATTTCTTATATTCAATGG\n", "\n", "idx 1 locidx 83\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 22 0]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 22]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 22 0 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 22 0 0]\n", "TACACAGCAAGAATCTGGCCATACGGGGCACTGTATGAAACTGCTTGGATTTACGTTACTCAGTGGTAAACCCCCGGAAGCCGATA\n", "\n", "idx 1 locidx 84\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 16 0 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 16 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[16 0 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 1 15 0]\n", "CGACCGAGGTGCTAAGTGGAACCTGAAGGCTGGAACTACTTTAACGGCACTGTCGCGCCATTAAGCAAAGATTACAGCCAACTCAT\n", "\n", "idx 1 locidx 85\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[19 0 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[19 0 0 0]\n", "AAGGCGAGCACTCCCGCAATGTGCAACCAACGGCATTCCTGTGTGCGGAGACCCCTGATCAACGGCTCCCCCGCATCCCGCCTGGC\n", "\n", "idx 1 locidx 86\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 21 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 21 0 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[21 0 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 21]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TCTCACTGCAGTGTGTAAAGACGTAGAAAATGGACCCTGATGGGTGAGCAAAGTTTTCATGTCCGCCGTCTATAAGCCATTGCTTT\n", "\n", "idx 1 locidx 87\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 20 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 20 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[20 0 0 0]\n", "CATATCCTGTTTTCCTAATTAAATGGGTGGTCGAGGAAGCGCCCTAACAGGGTTGATCAACTACCAAAGACTCGGTGGAACCCTAG\n", "\n", "idx 1 locidx 88\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 21 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 21 0 0]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[21 0 0 0]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 21 0]\n", "AGCCCCTTTCACGATCAGTCACCACGCCCCGCATTGGTAGTCAAGGTTCTAGTTGTTCCGAAGCGCTAATCTGCGGACGTAAATTA\n", "\n", "idx 1 locidx 89\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[22 0 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[22 0 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[22 0 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 22 0 0]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CTGAAGCTAACTTGCCACTAGTCACGCTCATCATGCCCGTAAGACTGAGGAGTGGCTGTACAGTCGCTAGATAGACAATACCGCAG\n", "\n", "idx 1 locidx 90\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 22 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 22 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 22]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 22 0]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 22]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 22 0]\n", "GGGACTCCCTACCCCCTCAAAATTACCCGTTTTGTTTCCATCAGGTACAACGGAGGATGCACGGAGTAAGAGGGGCCACCGTAGGG\n", "\n", "idx 1 locidx 91\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[22 0 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[22 0 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[22 0 0 0]\n", "AACGCGTTCTTTTGTGTTTTTGCAAGTTAGGCGCTCGCAGCTGATTTAGATCAATACGACTCGTCTACTAGTAACAAAGGCATGGA\n", "\n", "idx 1 locidx 92\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 22 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 22 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 22]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 22 0 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 22]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 22]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TCCGGTAGCATGGGTTGACTCTGTTCCTGTAAGGTGTGCTTAGGGAGGCAGCACTTCACCGTAAAGGCACAGCTGGTAAGGTTACG\n", "\n", "idx 1 locidx 93\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 20 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CATTAGGATTGGTCCACTTCGTCCAGCCCCTGGACATGGCGTTTATCTGATTGTGTTGTATTCACGTTGGGGTGCACCCAATGCCC\n", "\n", "idx 1 locidx 94\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 23 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[23 0 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 23 0 0]\n", "TTTTATTAACTTCGAAACCATTCCCACAGCGTACGTTAGAGCTTTGGGGAAATATGTATAAGGGCTGCGACTGGCGCTCGATGCTA\n", "\n", "idx 1 locidx 95\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[19 0 0 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 19]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 19]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 19]\n", "AGGAAATAGTAACTCCACGGCTGGTGAGAACGTAAGGAGAGCCGCTACTATCCTCGCTTTTGGCCAACGAGTGCCTGATTCCTGTT\n", "\n", "idx 1 locidx 96\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 24]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[24 0 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 24]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 24 0]\n", "GTTGTCAACCTTATCTTCTGGGGTCTTGGGGCGGACCTTCTGGGCCGCAGCGATGTTGAGTAAGCGATACATAAGTGGGCCCGCAG\n", "\n", "idx 1 locidx 97\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 22 0]\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 22 0 0]\n", "11 K\n", "16 (11, 5, 5, 0)\n", "[ 0 0 10 12]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 22 0]\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 22 0 0]\n", "ATGGATCTTACKCTAGCTGTGGTGGACCCGCGTTCTTTGGACTAGTAGGTTCCCCGCTCGTTCCGTTGTTTAACTCCATATAGCGT\n", "\n", "idx 1 locidx 98\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 22 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 22 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[22 0 0 0]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 22 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 22 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 22 0]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 22 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[22 0 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GATTCTGTTCATCGGTGCCATCCTTAAGAAGAGTGAACATTCAAATCGAGTAAGTCGGTTCTGTAACGGGGTTCATATGCAAGGGG\n", "\n", "idx 1 locidx 99\n", "5 M\n", "10 (5, 5, 5, 0)\n", "[12 11 0 0]\n", "40 K\n", "45 (40, 5, 5, 0)\n", "[ 0 0 12 11]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 23]\n", "55 Y\n", "60 (55, 5, 5, 0)\n", "[12 0 11 0]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[23 0 0 0]\n", "69 Y\n", "74 (69, 5, 5, 0)\n", "[12 0 11 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 23 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 23 0]\n", "CCCCTMCGATAGGCAGGTTTGGCTGAGAGAAGTGTAGTACKCGCGTTGCTTGAGGYGAGGGCTGATCCGYCAAACTTAGATGGCCG\n", "\n", "idx 2 locidx 100\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 15 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[15 0 0 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 15 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 15]\n", "CCAATATTGGCAAGGTCGTCTGATACGTGCCACTAGGCTCCTTTAACAGCTCCCAACTACATTGCCCGATCCCAAGTCTGCGGTTA\n", "\n", "NOT HERE\n", "NOT HERE\n", "idx 2 locidx 103\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 17]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 17 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[17 0 0 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 17 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[17 0 0 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 17]\n", "CTTGGGCAGCGATCGGTAGGATCCGATACAGACTAGATCTGACATGCTAGAGTGGAAGGACCATCACCATGGCGATGTGTCGGCCC\n", "\n", "idx 2 locidx 104\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 19 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 19]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 19]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 19 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 19]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 19 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CCCGGCCTGCACCCCGTTTCGTGTCGTCCATAGCATAAATCTCGGCATCGCGCGCCTGAAAGTAGCGGCTTGCTTGAACTTTACCG\n", "\n", "idx 2 locidx 105\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 19 0 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[19 0 0 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[19 0 0 0]\n", "AAAAAGCTACGCACTCGGACACCCCCTTTAACGAAATTCCGAACTCGAACGTCCGGGTCGGAACTCAAGAATCGGCGTTAGTTACT\n", "\n", "idx 2 locidx 106\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 19]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 19 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[19 0 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[19 0 0 0]\n", "GCTTATAACAGCTGGGGACAACTTATCGCTCTTACAATAGGCGAATCAGTGTTATTACGTGGTAACGAGCTAATCATTCATCTCCC\n", "\n", "idx 2 locidx 107\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 18 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 18 0]\n", "82 W\n", "87 (82, 5, 5, 0)\n", "[ 0 12 6 0]\n", "TTGTCCATTTTCAAGTTAGTTAGCGAAAGACCAGTGTACTTACACTTGCCCCGGCCCGACCGACTCTAACTCGATGTAGGAGWTCT\n", "\n", "idx 2 locidx 108\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 21 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[21 0 0 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 21 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 21 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 21]\n", "ACGTTTCCTTACCATCCCAGCATAATGGGATCACCGGCAATTTCCCAAGGCGCGTCCGTCAAGACCACTTGACACTTTGTCGTTAT\n", "\n", "idx 2 locidx 109\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 19]\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 19 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[19 0 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TGTTCACCTTAGATGTAGCCGCTAATGATGCAACCTTCAGTACGCTGTCGACTTATAGGCTGAAGCATATAGTGGGTTTGAGGAGT\n", "\n", "idx 2 locidx 110\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 21]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 21 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[21 0 0 0]\n", "GGCCCATAGCGCCGTTCCCAATAACAGAATAGTATGACCTGCGCTGTATAGGTAACCCCAATACAGTCCACGACCTATTATAGTCC\n", "\n", "idx 2 locidx 111\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 25 0 0]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 25 0 0]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 25 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 25]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 25 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 25]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[25 0 0 0]\n", "ACTCATGATGGACAATCGCTGCTAAAACGTTTATCCCGAAAAATACACCGCCGTCGATAAAGCCGGCGGACCGTCTTCTACGGGGC\n", "\n", "idx 2 locidx 112\n", "23 Y\n", "28 (23, 5, 5, 0)\n", "[12 0 4 0]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 16]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[16 0 0 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[16 0 0 0]\n", "85 W\n", "90 (85, 5, 5, 0)\n", "[ 0 12 4 0]\n", "AGAAAGGTATGTTGACGTAGACTYACCAGTGCATCACTCGAGAGTGTTTCACGTTACTCCCGCAAGCGAGCCGCGCTCGTCCGCTW\n", "\n", "idx 2 locidx 113\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 21 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 21 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[21 0 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TGGGACATACTAGAAGGTAACGATCGATGGTTTGTAGGATCTATTCCTCAACCCTCGCTTGTATATACCTTTCCGGCCCGGATATC\n", "\n", "idx 2 locidx 114\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 23 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 23]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[23 0 0 0]\n", "39 M\n", "44 (39, 5, 5, 0)\n", "[12 11 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[23 0 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 23 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[23 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TAATGGACTCATCGTGCTGAGCTACCACCCTCCGTGTGTMCTATACTCCTCTGTTTGGAGGGATATATTCCCTATCACCATCCGGG\n", "\n", "idx 2 locidx 115\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 15 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 15]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 15 0 0]\n", "GTACTGTGATCCATTTAATATTATCGCGTGGGACGCACGCATGTACGGGTCTGGCGTTGCAGGCGTTCACAGGTCAAATTGGAGCC\n", "\n", "idx 2 locidx 116\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 19 0]\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 19 0 0]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 19 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[19 0 0 0]\n", "CACGCATTGCCGATCTGAATACAATAAACCACCTGTACTGTCGGTGAGGACGTCTGGTGGGTAAACCGCAAGGAAGGACAGCGCCT\n", "\n", "idx 2 locidx 117\n", "24 W\n", "29 (24, 5, 5, 0)\n", "[ 0 8 13 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 21 0]\n", "ATAGGGTCCAAGTGCTTGCTCGAAWCTCTGCGCTGGGTTAGATATTCTCATTGTGTTCAGGTACTGAGCTAGATTATATTGCGACG\n", "\n", "idx 2 locidx 118\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 23 0 0]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 23 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CTAAAGAGTCCAAGATGCTTGGGGAGTCTTGGACTGGACGTCGCGAGGTTTTAGTGAGGGCATTCGTCCACACGATGCCACGTAGG\n", "\n", "idx 2 locidx 119\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 27 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 27 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 27 0 0]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 27 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 27]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 27 0]\n", "GTTATCGATTAAACGTCGGAACAGCTACCGGCCCTAATAGTCCTTGTCTAAACTCCTGGCAGTCCTCCGGCTTGGCTCCTGCAGCT\n", "\n", "idx 2 locidx 120\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 19 0]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 19 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[19 0 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[19 0 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[19 0 0 0]\n", "GGAGTCCTCGCTTCGATCCTTATCTTGTTACAGCAAAGCAGCTTTCCCTCAGCTCAACCGGGAGATGCCACCATATTGTTATCAAA\n", "\n", "idx 2 locidx 121\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 26]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 26]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[26 0 0 0]\n", "GGGTTAGGCGTATCTGCCAAAGATTCTTCGATCGTGATGATTCTAGACGACAATACACCTGATGCTTCTCGCATGCATAGCAATGG\n", "\n", "idx 2 locidx 122\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 21 0 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 21 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 21]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 21 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CTTAGTACCAGCACAGTGCCGCAACCTTTCGGCTTTGGGATAGGATACATATTTTTAGGATAGTTTGAGTATGTTGCGTCCTCTCT\n", "\n", "idx 2 locidx 123\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 21]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 21]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 21 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AGAAAGACGATGGCCGCCCCAAGAGAGGCCTGAACGGCATGATTAGAGCGTGTAGGGCTGACGAACGTCTGGACGACACAGCATCA\n", "\n", "idx 2 locidx 124\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 24 0]\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 24 0 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 24 0 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[24 0 0 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 24 0 0]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 24 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 24]\n", "TGGATCCGCCGTGGGACGGCATTACTAATGCAAAACCGTTGGTCAAGGTCTTAAGCTTCGTCCGTGCTCTTCAAATTTCTTAACGT\n", "\n", "idx 2 locidx 125\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 23 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 23 0 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 23 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CCGTTTCACCACGTGATACTCCAGAGTCTTCCATTGCACACATACTTGGCTCCAGTAGCTCACGTACCATACTTACACTTTAGCGT\n", "\n", "idx 2 locidx 126\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 22 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[22 0 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 22]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 22 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[22 0 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TAAAAATAAAGCAATTGCTGCCATCTATGGGCAGTTTGATGGTTTTTTATGCTCTACTATTAATTATGTGATCTTGCCCAGGAGGT--\n", "\n", "idx 2 locidx 127\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 16 0]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 16 0 0]\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 16]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 16]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[16 0 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 16 0]\n", "GAAGCCTTTAGAAGGGCCAAGGGGAGATCCATTCAGGGCTTGTTGCACGAAATCCATTAGCTCTCATTAATTCTATACCACTTATC\n", "\n", "idx 2 locidx 128\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 21]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 21 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 21 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CCGGTCAACTACTGTCTTACGGGGGGGGCATCCGTTCCTAGTCGCATTACGATATTCGTATGCCGGTACTTCCCTGGTGGATAGCA\n", "\n", "idx 2 locidx 129\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 19 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 19]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 19]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[19 0 0 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[19 0 0 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 19 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 19 0 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 19 0 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 1 18]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 19 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[19 0 0 0]\n", "ATCCTCTCCGACAAGGTTCTGGTGCGTTGAATGGTAGGCGACCTCACAGCACCCACAACAGTACCGACAGCTGACCTAATCCGCCC\n", "\n", "idx 2 locidx 130\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 21]\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 21 0]\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 21 0 0]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 21]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 21 0 0]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CGTTAACCTTACAGACACATTCGGTTCGCGCAGTTAGATGTGAGACGAGGATCGTGGTACAACCAAGCTTATCACAGTACGGAGAG\n", "\n", "idx 2 locidx 131\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[20 0 0 0]\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 20 0]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AGGTTCAAGAGTTTGTGCACTATTCACTCAACCTAACGCAGAGATTACCCAGGGGCTACGCTAGCGATAAACCACCGCAATACCGG\n", "\n", "idx 2 locidx 132\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 14 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 14 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[14 0 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[14 0 0 0]\n", "AAATTGCCACGGTGACAATTGAGGTTACGAGCCAGAGTACAGCCTTGTTATCTCAAAGTCCGGTGGTTCCCTACCCTGTATGGTCC\n", "\n", "idx 2 locidx 133\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GCCGGCATGTAGGCTAGAGCATCGAGCTCTAGTGAATAACTAGCACCGCAGGGAAACCATGCGGGTATTGACAGCCCTAATGCACT\n", "\n", "idx 2 locidx 134\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 22 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 22 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[22 0 0 0]\n", "74 K\n", "79 (74, 5, 5, 0)\n", "[ 0 0 13 9]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CGATCAATGCCGGTCCTAGTTAACGCAATTGCTGATGCTCTTCTGGCCTAGGGTCCAATCCATGACTAGCACGAKTGAAAGAGAGG\n", "\n", "idx 2 locidx 135\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TTACGAACGTTGACAGCCGCGCATGACAAACAAGGTATCCAGAAATCCCCTGTCATATGAGGCAGGCAAGCAATTTACTCGGGGTT\n", "\n", "idx 2 locidx 136\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 20 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 20]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 20 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 20]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[20 0 0 0]\n", "GTTTGCAGCGGGCCAATGACAGGCTAATACGTTGATGGTGGCGCTAAAAGTAGTCGAGCACTGGCGAACCTGTGAAGACCGCCGTC\n", "\n", "idx 2 locidx 137\n", "54 G\n", "59 (54, 5, 5, 0)\n", "[ 0 0 0 22]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 22]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CCCCACAGAGCCCATTTGGGATGCCAGTTGGCGGGGGTGCCCCGCCTCACCTCAGTCAGTTCTGTGAACGTAAGGGTCTGTCGAAA\n", "\n", "idx 2 locidx 138\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 20 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GGTGCTGTGGTGTCTCACCATAGATGGTTTTCTTCGCAGATGTCATAGCTGGCCCTGCCACCCTTGAATCGTGATCGCTAGTGACA\n", "\n", "idx 2 locidx 139\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 19 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 19 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 19 0]\n", "77 M\n", "82 (77, 5, 5, 0)\n", "[ 9 10 0 0]\n", "TCCCTACTATCCACCCTGCAGTGCAATTCAGTCTACGCTGCATTGCACAAATAGTATCGCAGTTGAAGTATAATAATMAGCCTACT\n", "\n", "idx 2 locidx 140\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 21 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CACAACGTTGACACTCTCGCGCCAACCCGTCCCGGCAAGAGGCGGCAATCTAATGTGTCACGAAAGTGCGTGGGAAAGACAAGACG\n", "\n", "idx 2 locidx 141\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 24]\n", "25 M\n", "30 (25, 5, 5, 0)\n", "[13 11 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 24 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 24]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 24]\n", "CGGATTGCCGAAAAAGGAGAAAAAGMTCCACCGATATGTGGCTCTTACAGGAGTCTGTAGGCGAGTCGCTTGTCTGCCGTTTATCC\n", "\n", "idx 2 locidx 142\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 18]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CCGTGACCTACGTGTTTTAACGGTGAGACCGGTGACATAATTAAGATGCATAATGCAGGGGAGTGAGGCGGGTACGGAGTCGATGT\n", "\n", "idx 2 locidx 143\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 21 0 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 21]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 21]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 21 0 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 21]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 1 0 0 20]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AGCTATTCGCCTTTGCATCGGATCTCGAGCTCGCGGACCGAAATGACAAAGTCGCACGCGGCTGATCTACTTGTTCTTTGAAGTAT\n", "\n", "idx 2 locidx 144\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[19 0 0 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 19]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 19]\n", "69 K\n", "74 (69, 5, 5, 0)\n", "[ 0 0 10 9]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GGCAGCACCGCTTGCGTGCGCGAATGCAGGGCGTGTCAATGCGGCAGAACATCTCTGGGAGGGCCCTCGKACCGGATCGTCGACAG\n", "\n", "idx 2 locidx 145\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 21 0 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 21 0 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[21 0 0 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[21 0 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 21]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CATGTCTACATGAGAATTGGCAGCTTCATACTATGACGTGGGGTTGCAGGTGAAGAGTAAAATAGACGATGTAAGTGTACTGCCAA\n", "\n", "idx 2 locidx 146\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 22 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[22 0 0 0]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 22 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[22 0 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 22 0]\n", "TCGCATGAAGATCTGGTTCCTAACTAGACTTCGACTAGTACGCTCACGTCGTCTCAACGGCTCGCTAACAAGATACGAGGTGTCTT\n", "\n", "idx 2 locidx 147\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 18 0]\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 18]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 18 0]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[18 0 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[18 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 18 0]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GGTGGCTCAGTGGTATGTATCTCTGTATTAAAAACGCTGGTATTGAAAATACCAACCATCGATGGGATGCCACCTGTCGATTCTAA\n", "\n", "idx 2 locidx 148\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 18]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[18 0 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[18 0 0 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[18 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 18]\n", "GAAGCCCGATTCCTAACAGCGGATCTTGTAGGACTTCCACCGGCAAGCGTGTCCAGGCGCCGACGTAGGGAGAGTGTAGCTTCGAG\n", "\n", "idx 2 locidx 149\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 19]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TAGGTTAGGCCACCGTCGGACATTGTGTATGGTAGACATGCCGCCGCTTAATAGGAAATTGCACAGAAAGGTCTTAGACGGTTGAT\n", "\n", "idx 3 locidx 150\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[19 0 1 0]\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 20 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 20 0 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 20 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 20]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[20 0 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[20 0 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[20 0 0 0]\n", "AGCGCACTATATTCCGGCCGAAGCCCACGCGGAACTGTAAGCGTAGTGTTGCTTCTGCGAGCGCGAATTGGGATATCGGCTGCACA\n", "\n", "idx 3 locidx 151\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 16 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 16 0]\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 16 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[16 0 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 16]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 16 0 0]\n", "AACGTCTCCTTTTTCTCTCGGTGGCGATACACGTATCAAGCGCTGAAGCACCGTCGCTATGCAGCTAGTGGCAAAGGCGATGCTCC\n", "\n", "idx 3 locidx 152\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[21 0 0 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 21 0 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 21 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 21 0 0]\n", "ATGACCTAAGAGAACGGCGCCGTTACTGCAATAATTCCGCAGGATCCTTTTGGACAAAAAACGAAACAGAGACTGAGCTTCCATTG\n", "\n", "idx 3 locidx 153\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 20 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[20 0 0 0]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TCGCCAATGTATTGAACTACCTCTTGCATATTTTTAATTCCTCAGTCCTTCGTTGTTGGATCCGCAAAGACAGTTCGTGGTTCCGC\n", "\n", "idx 3 locidx 154\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 17 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[17 0 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 17 0 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[17 0 0 0]\n", "GTCCAAGATAGTACGCATTACGGAAATAATCTAGCTACATACGCGCCACGGGTTAAGCAAGGAATTAACGGCTCTATCAGAAGATG\n", "\n", "idx 3 locidx 155\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 22 0]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 22 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[22 0 0 0]\n", "TTTAACTGTTCAAGTTGGCAAGATCAAGTCGTCCCTAGCCCCCGCGTCCGTTTTTACCTGGTCGCGGTCCCGACCCAGCTGCCCCC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 3 locidx 156\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 23 0 0]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 23]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[23 0 0 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 23 0 0]\n", "TGCACTGCGAGGGCTAGGGGACTGCAACAAGCCGAAAGGGTGACGTGCCTCTCCGTCGGGTGCGCTGTGTCGAACCATCCCTTGTT\n", "\n", "idx 3 locidx 157\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 20 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 20 0 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 20 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 20 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[20 0 0 0]\n", "CCCAGTCAGTATGCCTATCGGGCATTCGGGCCCGCGTGCACTCCACTGACGCCGATAGTGCTACAGGCGCCGCTATTGAATCCCGG\n", "\n", "idx 3 locidx 158\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 21 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 21]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 21]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 21 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[21 0 0 0]\n", "TAAAGATTCACTTCCACGAGTCATGTTACTAAAGCGTTAAAGCGTAAAGCTTATATCTCTCTTGCATTTGGTATTACATCCTGCGA\n", "\n", "idx 3 locidx 159\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 17 0]\n", "51 S\n", "56 (51, 5, 5, 0)\n", "[9 0 0 8]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 17 0 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CGACCCGCCTCCTGTGAATCGCATGGCTGGGGCTGAACGTACGTAGTAACTSGGGAGTGGACCAAGTACTAGGGTATAGTTCTATT\n", "\n", "idx 3 locidx 160\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 26]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[26 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 26]\n", "ATCGGATACGATGGCTATAGCAATTGACATCCGCCTCCTAGTTTGTAATATTGTTCACGAGGGTGTACATGGCTAGGCAGAAATCG\n", "\n", "NOT HERE\n", "idx 3 locidx 162\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 20]\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 20 0 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 20 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[20 0 0 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 20 0 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[20 0 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 20 0]\n", "AGGAATGGATAAACGCTCTTCAGGCTGAATTCTGCTACTTATTAGATGGTGGATCACACGTGATCCTTAATCTTAAACCGACACCT\n", "\n", "idx 3 locidx 163\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 16 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 16 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 16]\n", "CTCGAGTTGCTATCGGCCAACGATTGGCAAAGCTCCTGAGATATATAACTAGTTCGTTGTCTTCGCGGGATAAGGTCGTGCTGGAG\n", "\n", "idx 3 locidx 164\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 23 0 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 23 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GCGTGGGCCAGGGAAGCTCTCGCGAATTATTCGCTCGTTTGGGGGGACTGATACATGTGAAGGCGTGCGACCTAGTGATTTATATG\n", "\n", "idx 3 locidx 165\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 16 0]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 16 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[16 0 0 0]\n", "31 W\n", "36 (31, 5, 5, 0)\n", "[0 7 9 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 16 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[16 0 0 0]\n", "AACTAAGACAGATCCGAATAACGCCTCTCAAWTAACCTCCTTGTGTCACGCGTGGCTCATGCGATTACGCGATATCCTTGGCGCAT\n", "\n", "idx 3 locidx 166\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 16]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 16 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 16 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 16 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 16 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 16 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 16 0]\n", "GGGCGGGACCGCCCCAGACTATCTTCGGAAACGGTCGCTAGAACACCCTCAGACCATGTGAATACTTGTCGATAGGCCGACGCTAA\n", "\n", "idx 3 locidx 167\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 21 0 0]\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[21 0 0 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 21 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 21]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[21 0 0 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 21 0 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "TCCTTAAGGATCGTACGAATGCATGGCGTTGCTGATGCCCATCGATGGTCCATTACCACCTGATGGCGCATAAACGGAGCTCGCCA\n", "\n", "idx 3 locidx 168\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 19 0 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 19 0 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[19 0 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 19 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[19 0 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "AATTGCGCCTTTGTCTCGGTCGAACCTGTCCACCATATCACACCTGCCTCACGCCAAGTGAATTTACATGATTCTTTCCGAGGCCT\n", "\n", "idx 3 locidx 169\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[17 0 0 0]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 17 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 17]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 17 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 17 0 0]\n", "42 C\n", "47 (42, 5, 5, 0)\n", "[17 0 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CATGAAGTCTGAACTCCTTTGCGAGGAAGCCCTTTGTTGTGACCAGGATTAGTATGCTTGTGCCTGGGCACGACTTAACTGAGAGT\n", "\n", "idx 3 locidx 170\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 21 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 21 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 21]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 21 0 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 21 0 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 21]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 21 0 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 21]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CTCGTTGTAAACCTGCGTCCGTTATGCGGCCAACTTTCGCACGCTAGGGTAGTTAAAGGTAATCCATCCCCGGACTCGTGGGAGAT\n", "\n", "idx 3 locidx 171\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 1 18]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 19]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 19 0 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[19 0 0 0]\n", "AGCCCCCGTGTTAGACAGTTGAATATTTGGTCCTGGGTTACCAGTGCATGTTGTAAGAGACTCGTGTACGCAAGGAGAACCTTCAA\n", "\n", "idx 3 locidx 172\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 19 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[19 0 0 0]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 19]\n", "77 W\n", "82 (77, 5, 5, 0)\n", "[ 0 9 10 0]\n", "ACAATCTCAGTATGCAAATGTGAAAGGCACGATGCGATAAGCCGCACCGGTAACCAATCGTGAGCGTTGGCACTACGWACCAGGAA---\n", "\n", "idx 3 locidx 173\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 20]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 20 0]\n", "69 C\n", "74 (69, 5, 5, 0)\n", "[20 0 0 0]\n", "CTAAGGCAAAATACAGTCACAAGTCTTAGACAGAGGAAGTGTGGGGACATGCTTCTTACAGTCGCGCGACTCATTTGGGAAGTACT\n", "\n", "idx 3 locidx 174\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[18 0 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[18 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[18 0 0 0]\n", "AACAAAATGATAAACCGATCATTTTTGTAGTCCTGTGCGTCGAGCCATTCTTCCACCCGTCTACTACGGTCGATTACTCAGCCGTA\n", "\n", "idx 3 locidx 175\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 18]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 18]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 18]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[18 0 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[18 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 18 0]\n", "GCGGCTTCCATTGGCTTGATCTCTAACAGCAGGGACTGGTTTCGCCGGAACGGTGCCAACGCTACGAGATGGGGTAGATGACTTCG\n", "\n", "idx 3 locidx 176\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[16 0 0 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 16 0 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 16 0]\n", "30 R\n", "35 (30, 5, 5, 0)\n", "[0 9 0 7]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[16 0 0 0]\n", "GTATAGCTTTTTTTGTTGGCCGTAGTGATCRATGATAATAGCCTCATCTCACGATTCGAGGGTAAGTCAACTTCCGACGAATGCAT\n", "\n", "idx 3 locidx 177\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 23]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 23 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[23 0 0 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 23]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 23 0 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 23 0 0]\n", "TCGGATAGAGAGTTCAATTATTGCAATATCCGAATCGACGTGTAGACGAGAGGTGGTATAAAGTCGATGGCAAACGCCACGAGATC\n", "\n", "idx 3 locidx 178\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 20 0]\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[20 0 0 0]\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 20 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 20]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[20 0 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[20 0 0 0]\n", "TCTACATTGTAATTGGATCCCCCTGGCCGCGGCGGAAATGTTGGGACGTTTCTAGGTTAGCACTAGTAACCCTTGTATAATACTGG\n", "\n", "idx 3 locidx 179\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 13 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 13]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[13 0 0 0]\n", "TAACATAGCCAAATTAAGATATTAGTTCGACGCCCCGGCCCTGGACGGCTTTGGCCCAGTTGATAGCTCGGGCATCCCAAGTCGGC\n", "\n", "idx 3 locidx 180\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[18 1 0 0]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 19 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 19 0 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[19 0 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TTATAAGACCCTACGCGAATTGGGGCAAATGCGGACGTGTATGCGGGCTTTGTTATGCATAATTGAATTCCACGTCTGGTTTGAAG\n", "\n", "idx 3 locidx 181\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 20]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 20]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 20 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 20]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[20 0 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CGCTACTTCCGGGGTGCGTGGTCTACACACTTAGGCAGACTAGGGCGAACTCCTTACTAAGCTGTACCCTCAGGTAGCCTTAAATC\n", "\n", "idx 3 locidx 182\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 18 0 0]\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[18 0 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[18 0 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 18 0 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 18]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 18 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[18 0 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 18 0 0]\n", "AGTGGAGGGAGACGTAGACGTGTAGTGGCACCACTGCTGAGCAGTATTCCACCCGTTGTTGGTGTCCGTACTGTCTTGTTTGCCCA\n", "\n", "idx 3 locidx 183\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[20 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[20 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 20]\n", "ATTAAAGTTCCATCTGCACCAGTAGGAAGCTCTCTAACGAGAAGTTTAGAAATAGGCCGGGTGCGCCCGGAAGCGATCGGAGAGGT\n", "\n", "idx 3 locidx 184\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 19 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TGTGTCCGATAGCCTTAGTCTTCTAACGAGAAGCCGAACTATACCCGCAACAGTGCTGATCTCTAGGCTAAACCGTACCATGAAAC-\n", "\n", "idx 3 locidx 185\n", "16 R\n", "21 (16, 5, 5, 0)\n", "[ 0 14 0 9]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 23]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[23 0 0 0]\n", "GTTCGACTCTATAGGCRCTAGCGGCACGTCGCGCGTTATAAATCCACGTTAGAAGCTCTCATCCGTACAAATAGTGTTGCCTAAAA\n", "\n", "idx 3 locidx 186\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 17 0]\n", "65 R\n", "70 (65, 5, 5, 0)\n", "[0 8 0 9]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 17 0]\n", "GGAAATCTCGTCTACCTCCGTTCCTATTCTTACTAGGGGGACCTGGACCAGCTTTGTAAGCAAAARGTCTTTGGCTTAGAAGTTTG\n", "\n", "idx 3 locidx 187\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 24 0 0]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 24 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 24]\n", "CAACGGATCTGTAAAAGTGGGCAAAAATCGATAGAACGGTGCAATTAAGTACCGTCAATGGGACCTGAGGCTTCTAACAGCCCGGT-\n", "\n", "idx 3 locidx 188\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 19]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 19]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CTGAGCTGCTTCTGAGCTTGGTCCTGATCCTCCCCGTTCGTCGACTGCCCAGCTCAAGATGGAGATTCAGCTGCCGTGATCACCGT\n", "\n", "idx 3 locidx 189\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 24 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 24 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[24 0 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[24 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 24]\n", "AATGTGAGATAAAGCCCATCATAGACCCGGAAGGAAGCCGAGGGGCGATAGGCTCCGTCCCCCAGTCCACAGCTACCGCAGAGCTC\n", "\n", "idx 3 locidx 190\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 20 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 20]\n", "54 G\n", "59 (54, 5, 5, 0)\n", "[ 0 0 0 20]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 20 0 0]\n", "ATTAATGGCCCCGTCGTCCCCGCGAAATCTAAGCTGCATGGTGAGGCGGCTCGTGAACGCGCAGTATTTTCTTGTACTCAACTTGA\n", "\n", "idx 3 locidx 191\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 20 0 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[20 0 0 0]\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 20]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "AAAACGGCTAGACCGGTAGGGATATAAAATCATAACATAGCTTGGTTGGGCTTACGCACGTGCGACGCTTACGCCGTCAAGAATCT\n", "\n", "idx 3 locidx 192\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[18 0 0 0]\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 18 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 18 0]\n", "TTCAACTACACCAGTCGCTGCCTCCATAAAGGGATCATCATACAGCACCGGTAAAGTAAATTGCGTCGCGATTCTATGCTACATTT\n", "\n", "idx 3 locidx 193\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "GTGACAGTCCGTGACAAGGGTCGGCATAGCCGATGCTACTACGTAATTCACTGCGGCGGTAAATAATATATGTACTTACCCTGAGG\n", "\n", "idx 3 locidx 194\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[17 0 0 0]\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 17 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 17]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CAATGGCGGTGCAACAACGTGAAGAATTCCGAGTCTTACATGACCTTACGTGGAAACGCAGTAACTTTGTATAGGACGCGGCCAAT\n", "\n", "idx 3 locidx 195\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 18 0]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 18 0]\n", "AAATTTGTTCACCGGTCCCTGGTTTATTTAGCGTCGAGGAACATTGCTATGACTCGCACTTTATTCACTTGCGGTATGCATCCAAG\n", "\n", "idx 3 locidx 196\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 19 0 0]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 19]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 19 0]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 19]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 19 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 19 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[19 0 0 0]\n", "58 S\n", "63 (58, 5, 5, 0)\n", "[10 0 0 9]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 19]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 19 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 19 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 19]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CTCCGTCAAGGGAATATTTCTCCAACCGATCCCATGTGGGAATTAGGTCCTAAGGTCCSAAGTTTTCGAGATAAGCCGGGAGCTCT\n", "\n", "idx 3 locidx 197\n", "1 M\n", "6 (1, 5, 5, 0)\n", "[12 10 0 0]\n", "31 W\n", "36 (31, 5, 5, 0)\n", "[ 0 12 10 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 22 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 22]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[22 0 0 0]\n", "AMATAGGAGTGACGTAGTTGACCTCGATCGGWCCGTCGAGGCAAATGTCACGCCGTCTCCACTTCTGGTGTAGCCCCCAGTGGAGT\n", "\n", "idx 3 locidx 198\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[24 0 1 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 25 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[25 0 0 0]\n", "CTAGTTGAGCAGTTAGTGCACGGATAAGGCGTGGTCTCCGGTTGTCTTCTTAGGTGGAGGAGTCCTCGTAGTCTGTGGGTGCAATT\n", "\n", "idx 3 locidx 199\n", "34 K\n", "39 (34, 5, 5, 0)\n", "[0 0 5 8]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 13]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 13 0 0]\n", "GGCTACAGGGGTCGTCGGACCAATTTACTCAATTKTGCCGGGAAACCTGCTTTTGCGTAGACCTTCTTAGGGAGGGTATCAGATCA\n", "\n", "idx 4 locidx 200\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[18 0 0 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 18 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[18 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 18 0 0]\n", "AGTTGCCCCTCGAAATCGTTCTTGTTGCAGTCACTAACTGCAGGTGGACGTGCGACAACTTCGGAGGTAACCATGTTACCCAATCG\n", "\n", "idx 4 locidx 201\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 18]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 18]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 18 0 0]\n", "AGACCTAACGTAGGTCCCAGGGTTAACGGGTGGACACCCATCTATATTAAGATGTAACCGGGCCAGTACTTCAGGCCGATGGCTTC\n", "\n", "idx 4 locidx 202\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 25]\n", "TCTCTCCAATACGTTGCCGAGTCGGGATTTAGACCATGGCTAACTTCGTGCAGAGTTGTAGTGGGGGTCGGGCCACCCAGAAATTT\n", "\n", "idx 4 locidx 203\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 22 0 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 22]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 22 0]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[22 0 0 0]\n", "CGACTCAGAGCTCATAGTGGACCCATGACGTAGACCAGTGGCGTGCGTTTAGTAGTGGTGTTGAACAGTAGCTCCCTGACGATCCT\n", "\n", "NOT HERE\n", "idx 4 locidx 205\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 18 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 18 0 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[18 0 0 0]\n", "GTCGAGCAGGACCAAAGTATGCCCATCAAGGTAACACGCGCTCTCGCTTTATTTTGCCGCCGCCGGATGCAATGACCGTAAAACCG\n", "\n", "idx 4 locidx 206\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 22 0]\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[22 0 0 0]\n", "13 T\n", "18 (13, 5, 5, 0)\n", "[ 0 0 22 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[22 0 0 0]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 22 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 22 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 22 0]\n", "GAGTAACAGACCCTACTCTACTCTGATCGCCGATGTCGATGAGGCTTGATCATAGGCAAACTAAGGCTCAGTCGTTGCTACTGTCG\n", "\n", "idx 4 locidx 207\n", "39 S\n", "44 (39, 5, 5, 0)\n", "[ 9 0 0 10]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 19]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 19]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[19 0 0 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[19 0 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TTGGGAGTCCTTTGCACCCGGCAAGAACACGCCGTATCCSCGGCACCCGAGGGTTTGGAGACGGGGGGCTCAGTGCTGCCCGCATA\n", "\n", "idx 4 locidx 208\n", "5 A\n", "10 (5, 5, 5, 0)\n", "[ 0 21 0 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 21 0 0]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[21 0 0 0]\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 21 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[21 0 0 0]\n", "ACCCGACATCTAAGGTGGATAGTGTCCATTGTCCATAAATGGCACTGTGTCCAGTCAAACACCTAAAGTGAACGCCTACAACTGAG\n", "\n", "idx 4 locidx 209\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 19 0]\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 19]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "17 C\n", "22 (17, 5, 5, 0)\n", "[19 0 0 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 19 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 19 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 19 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CTCTCTGTTGGCGACGGCTAATTGATCTCAGCACTCAGTTTAGAAACACACCTTCGTGTGAGGGCTGGCCGTCCCTTACAAAGCGT\n", "\n", "idx 4 locidx 210\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 19 0 0]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 19 0 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 19 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[19 0 0 0]\n", "GGATTAAGGCAATCCGAGACCACTCACCGAGACTCTTACATTCTGCGCCCGACGCTGAGGGGCTGATATGGGTGGGCTATGTTCTG\n", "\n", "idx 4 locidx 211\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 15 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 15 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[15 0 0 0]\n", "54 G\n", "59 (54, 5, 5, 0)\n", "[ 0 0 0 15]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 15 0 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 15]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[15 0 0 0]\n", "CTTGTCCAAAAGTTAGAATCGTGACAGGCCCCCAGTGGTCTGTGATACATTAGTGACACGTAATGAAGATATCAATGCGCATGGTG\n", "\n", "NOT HERE\n", "idx 4 locidx 213\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 21 0 0]\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 21 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 21 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 21 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GAGCGATACAACGCCGCTCGGATGAACCTTTGACTTCCCTAAATAAATAGCTGATCCTACTAGCGGTCCGACGCTCACTACAATTT\n", "\n", "idx 4 locidx 214\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 1 21 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CGGGTGACCCGAAACTTGTTGAAGCCCGGATGCTTTCAGACATTACTAGTGGTCGTACTCACGGTCGTGTCCCGATCGTGTTAAGG\n", "\n", "idx 4 locidx 215\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 16 0]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 16 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TCACTATCAATGGGAGTTTCAATCCTCATTACTCCACCTGCAACGAGTACCATATGGTAATCTCGGAGATCGAAGCTCTAGACAGT\n", "\n", "idx 4 locidx 216\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[28 0 0 0]\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 28 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[28 0 0 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 28 0 0]\n", "40 C\n", "45 (40, 5, 5, 0)\n", "[28 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 28]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 28]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 28]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 28]\n", "CCTCTTTTCCTTGTAGTGGGAATATAAGGTAGCATGCCTACGATTTGGTCGGGAGTTATGGTTCCCTCAGGGTGGCGCGGCCTAAA\n", "\n", "idx 4 locidx 217\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[14 0 0 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 14]\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 14 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 14 0]\n", "GCGTAGTAAGCTTGCATGGGAGCGACCACCCGAACGAGATATCATTCACAACGTTATACATACACTGCGCTTCCCCGGCATATTGG\n", "\n", "idx 4 locidx 218\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 1 21 0 0]\n", "CAAAAGCATACGAAATTCCTAGACCGAGGGTACAGCGGAACGCCCCGCTATCTTATACTTTTAAGCATATACACGGGTACTAAGCT\n", "\n", "idx 4 locidx 219\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[24 0 0 0]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 24]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 24]\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 24 0]\n", "73 S\n", "78 (73, 5, 5, 0)\n", "[11 0 0 13]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 24 0 0]\n", "TAGCTTATGAGGCTCCCTCGGGTTGTCCCGCCGGATGCTGGGCATACCTTAAGAGTGATGGCGACGACTGTATSTGAAAGCGCAGG\n", "\n", "idx 4 locidx 220\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 20 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 20]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 20]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 20]\n", "80 Y\n", "85 (80, 5, 5, 0)\n", "[10 0 10 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[19 0 0 1]\n", "CTCAATCAGCTGGCGCTGGTGTGCGGTAAACCGATCCGTATCAGCGTTGCCCACAGTTGCAAGCCCGCGATCAGAGCCAGYTCGAC\n", "\n", "idx 4 locidx 221\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 22 0 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[22 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[22 0 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[22 0 0 0]\n", "GCCGTTTGCGACCCACTTATTGATTGGTGTCAGGCGGCCGTCCCCGTCGGGACCGTCGGTGAATCATCATTGGCAGGTCTAGCGCC\n", "\n", "idx 4 locidx 222\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 1 24 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 25]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 25 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 25 0]\n", "TGGCATGGCATTGCCTCATGACCCCAAGTGGCTAGGGATACGGAAGGCCGTACTAATTGAACTTTGGATGGTCTGAGGCCTCCCAT\n", "\n", "idx 4 locidx 223\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 18 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[18 0 0 0]\n", "TTTTGTATTACCAGCATAGCCAGTGTTAATTGTGCGACCAAGTCCCAAGTAGTATACCACTATCTATGGGGAATGATTAGGTTGGG\n", "\n", "idx 4 locidx 224\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CGATGAAACCAATTTCTCAAGAGTTATACCACTTAGGCCGACTGAGACGGGCCGTTGGACTTACTCGGAAGCGCTACTCTGAGGTG\n", "\n", "idx 4 locidx 225\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 15]\n", "GCGTCCTCTTATACGTTTCTCTGCCAGCATATCAACGGCAGTTCTTGGTTCTGCGGTTTGGCCTGGCTAGAACTTTCTAGTTACTT\n", "\n", "idx 4 locidx 226\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GACACATCGACTAGTATGCTATGGCCGGAAATCAAAGATTTCCATGGTGATCTTAGTTCTTTCCCTGGTTTGCTATGAAACAATCA\n", "\n", "idx 4 locidx 227\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[19 0 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 19 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 19 0 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GGCGTAGCTCAAAATCTTTTCGTGTTCAATCGCGACTATCGTCTTGTGACAAGCGTCCCCTTCTATCTTCGTCTAGTGAGGCACCA\n", "\n", "idx 4 locidx 228\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[20 0 0 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 20 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[20 0 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 20 0 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 20 0]\n", "54 G\n", "59 (54, 5, 5, 0)\n", "[ 0 0 0 20]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[20 0 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[20 0 0 0]\n", "CGTTTAGTTCTGGAGTATATTCCGATCCTTTCACTGTCGCTCAAATAATAGCGCGAGGGAGTTACCAGCTGTTTCTAGGTAAATGC\n", "\n", "idx 4 locidx 229\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 18]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 18]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 18 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 18 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 18 0]\n", "AAACAAAATACGGACACCGCGTTTACGATGTTGTGGAACACGACCCCACTTTTCGATTGTGGACAGTGCCCTTTTGTGTCACCCAT\n", "\n", "idx 4 locidx 230\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[20 0 0 0]\n", "ATACACTGGACAGAGTCTTCATGATTACAACTATGAGGACTCACTTAAAGGTCCGGAATACAAGCTCTCTAACGTTCTCACCCGGG--\n", "\n", "idx 4 locidx 231\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 15 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[15 0 0 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[15 0 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 15 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 15]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[15 0 0 0]\n", "ACTGTATGCGCTTTCGGACTCGGGAAATGCGGTCTGCGCCCACGGACGCGAGAAGTCGAGCGTAGCTCATTCGCCGGCATCACTAG\n", "\n", "idx 4 locidx 232\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[21 0 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[21 0 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 21]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 21 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[21 0 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 21]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 21 0 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 21]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AGCCTCTGTATCTTCCGGTGGACTTCCTGTAAGGTATCTTGGGGTCTGTGTAGCGATGAGGGAAGGCTAAGTGTCCTGCGGGGATC\n", "\n", "idx 4 locidx 233\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[17 0 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[17 0 0 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 17 0 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 17 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 17]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 17 0 0]\n", "TACGACTCCGTTCCCTATGCCGCACGTAAAGAGGCACGCGCTCGAAAAGTTGTTATCCGCGGACCGGATACAGCAAACTAACTTGT\n", "\n", "idx 4 locidx 234\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 17 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 17 0]\n", "TATTCAGACACGTAAGCGCGGCTCTATCTTACACGTATCCGGGAGACTTTAGTCCTTGCTGGGTATAAATGCAGGTGCACTTGGAC\n", "\n", "idx 4 locidx 235\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[17 0 0 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 17]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[17 0 0 0]\n", "AGACACCTTGAATCTCGATCTTCCAGGCTTGATAGAATTCAAAGTCGGGGATACCGGTCCGCAATTACTCACCGCCCCCCCACATA\n", "\n", "idx 4 locidx 236\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 20 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 20 0]\n", "AGCTATAAACTGGGATGGTAATAGATGAGGCACTACGGGGGTCCGTTCGTCAGAGCTCACGGCGCGCGCTTACTCAGCGCTATCGG\n", "\n", "idx 4 locidx 237\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 22 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[22 0 0 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 22 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[22 0 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 22 0 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 22 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 22]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 22 0 0]\n", "TCGGTGTGTCAATGGCTTCTGTCACCTCTGTGGTCCTACTACAAAAGACAAAAGTTCCACGTAATATGATACTCTTCGAGGAGATC\n", "\n", "idx 4 locidx 238\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 17 0 0]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[17 0 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[17 0 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 17]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 17]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 17 0 0]\n", "TGGGACCCGACCCTGAGCTCTCGGTGGATGGACGGGGTATTAGTGGCATCTGGGACTGACTCCAAAGAAGCATGGCCTAGTTTGCG\n", "\n", "idx 4 locidx 239\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 19 0]\n", "10 W\n", "15 (10, 5, 5, 0)\n", "[ 0 12 7 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 19 0 0]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 19]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 19 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 19 0]\n", "47 W\n", "52 (47, 5, 5, 0)\n", "[ 0 12 7 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 19 0 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TAAGATGTACWAAGGATGATCTGAACATGGCCAGTACTAGTAGTGGGWGTTTGAATGAAAAAGCAGGTTGTAAGTTTACGTGAATC\n", "\n", "idx 4 locidx 240\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 17 0 0]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 17 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CCTATGCGCCAGGTGCTAGTACGAGTACGGAAACTATGCGACAGAAAGCGGAGCACGAGATTGGAAAACCATAATTGCGGCATCAT\n", "\n", "idx 4 locidx 241\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 20 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[20 0 0 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 20 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[20 0 0 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGATCCGCGGTGTAGATAGTCGTTATCTATAGCTACAACATACCGACCGTGTGCTCTTAAGCCTTTCACTAAAGATTTATTCAGGA\n", "\n", "idx 4 locidx 242\n", "19 R\n", "24 (19, 5, 5, 0)\n", "[ 0 11 0 9]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[20 0 0 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 20 0]\n", "72 C\n", "75 (72, 5, 5, 2)\n", "[20 0 0 0]\n", "79 C\n", "82 (79, 5, 5, 2)\n", "[20 0 0 0]\n", "GACTTGCCATTCACCAGAARCGGCATGATCTGCCGACGCTCCAGGGCCAATACAA-CACTAGTCGG-AAAGCCGTTCCACACACTACT\n", "\n", "idx 4 locidx 243\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[21 0 0 0]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 21]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 21 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 21]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 21 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[21 0 0 0]\n", "78 Y\n", "83 (78, 5, 5, 0)\n", "[ 9 0 12 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CAGAACTTCTACCCTAGAAATTAAGGAGCTTCCCTCTAACTCAGGTTACCGACGTTCCCGGACGACGACTAAGTCAACYACCGAGG\n", "\n", "idx 4 locidx 244\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 21 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[21 0 0 0]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 21]\n", "54 M\n", "59 (54, 5, 5, 0)\n", "[11 10 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CATCTGCCCCGATCTTCAACGCCTAGGCGGAAAGGAACTTTGGGGCCTGTCCGGMGAGCCTTGCGATCGCACTCCAAAGAACCCTG\n", "\n", "idx 4 locidx 245\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 20]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 20 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGGCCAGGTGTCTATTCTACCCGCGTGAAGCCGTTAGTCTAACCCTATGGTTGGGCCGATTGCATGTGATGCACTTAGGGCTAACA\n", "\n", "idx 4 locidx 246\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TGGAGGCAACATAAATCCGCCGAGATAGGATAAATTGTTCACCTTGCCGAGACTCGGACCTGGCGAGTTACGTCAGTGCGTCATTA\n", "\n", "idx 4 locidx 247\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 22 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 22 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 22]\n", "ATCTCAAACCAAGACATTCTGTACGAAGAGTAGAGGCTACATGTCCTCGGTCCACTGTCAGGGGAGCTTAAAGTCAGATAATCTGA\n", "\n", "idx 4 locidx 248\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 21]\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 21]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[21 0 0 0]\n", "TGCAGGGGGCGAGTGTGGAACTGACTAAATACCACTGGAATGCGTGTGTCGGCGCAAGGTGCACGAAAGGAGCAGCAACACTCCCC\n", "\n", "idx 4 locidx 249\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 21 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 21 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CAGTCGTCTCGAACATTAAGGTCCATTATCGTACTGACGAACTGCGACGATACAGGATTGGACGGATATCCACCAGGGCCACATCA\n", "\n", "idx 5 locidx 250\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 19]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 19 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GTTTTATTATAAGTGAGTTCTTTCACAGTACTTAGGTTGTCCTCGAGTAGACTAGAGACCGCCTTTATTCACGAAAGCCTCAACTA\n", "\n", "idx 5 locidx 251\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[21 0 0 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[21 0 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CAGTCAACGTCACTCGTAATCACCACCCTCTAATAGCGCAGGAGATCGAGGACGCAAGCAACCTTTCAAGTGGGGTTGTTTCAACC\n", "\n", "NOT HERE\n", "idx 5 locidx 253\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 22 0 0]\n", "9 W\n", "14 (9, 5, 5, 0)\n", "[ 0 13 9 0]\n", "27 W\n", "32 (27, 5, 5, 0)\n", "[ 0 13 9 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CTCACAGCAWTATGCAACTGGTACGCCWGCGTACAGGCGTTGAAATCTCTAACGTATTCGCCGCGGTCTGGTGGCAGATCGACACG\n", "\n", "idx 5 locidx 254\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 19 0 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 19 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 19 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 19]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 19 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GCGTGGTGCAACTATAGGCACACATCGCTGAGTAGGCTCTCTGATCGTGTGTTCCGGCACAGATGAAGTCCGTTCCTCTGGTAATA\n", "\n", "idx 5 locidx 255\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 22 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 22 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 22 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 21 0 1]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 22]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[22 0 0 0]\n", "TTCTAAGATTAGTGGCCGGACTTATCAATTGCGAGAAGTCAGGGCCAGGCACGCGATCTATGTTTACGCTAAGACAAAGCTCGCCA\n", "\n", "idx 5 locidx 256\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[23 0 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 23]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 23 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[23 0 0 0]\n", "GTGCGAATTAATGATCGGTACCTTTACACCACGTATACAGTGCTTCGCTGCAATGGCCCAACGATCGAGCCTTCACGGTATGTCCA\n", "\n", "idx 5 locidx 257\n", "20 Y\n", "25 (20, 5, 5, 0)\n", "[ 9 0 10 0]\n", "31 s\n", "36 (31, 5, 5, 0)\n", "[ 9 0 0 10]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 19 0 0]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 19 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 19]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 19 0 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 19 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 19 0 0]\n", "AGATATCTTCCAAATGGTACYCTCGCCGTGAsACCTATAATTCCCGGAGATGCCAGAATATACATCCCAACCAGTCAGTGGTTACA\n", "\n", "idx 5 locidx 258\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 21 0 0]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 21 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[21 0 0 0]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 21 0 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 21]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[21 0 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 21 0]\n", "AAATCCGGGAGCGGGTGCGAACTATGGGCATTAACCCTGGAGGTTCGCCACAAGCTGGGGGTCTCCCCTTGTCCGGTGCAAGAGAT\n", "\n", "idx 5 locidx 259\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 18 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[18 0 0 0]\n", "GCGACCATGTATGGATGTCGCAAACTGCCCACATGACACTAAAGGTTATACGCTTAGTCCCGTGACAGCTATCGGTCCCTTTGAAA\n", "\n", "idx 5 locidx 260\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 18 0 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 18 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 18 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[18 0 0 0]\n", "CTAGAGCCAGGATGGTGCGGAGGGAAAGTTTTTATTTTCCGATACCTCGTAGCGAATCCGCTGCCCAGTTGCATCAACAGGCGTAG\n", "\n", "idx 5 locidx 261\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 16 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 16 0 0]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TGGCTCTAGCCTAGGTTGCTTAACGGATTTAACCACCGTTAGTACCTGAATACGGCTAGACGCTTATGCGGGTCTTTAGGCCTTAT\n", "\n", "idx 5 locidx 262\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 24 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 24 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 24 0 0]\n", "AACCACAGACCCAAGTAGATAAGATAAATCCGCCGAAGGCTTCGAGATGAACTATGTATGCCAGATTAACAAGGAAGCGGAGCATG\n", "\n", "idx 5 locidx 263\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 19 0]\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[19 0 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CGGGATTCAGCGCCTGTGAATCACACAGTTTCGTTTGTTAAAGACCGAGGCGATTAGGTATATACTCGAGGTGACGACTTTAGGGA\n", "\n", "idx 5 locidx 264\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 22]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 22]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 22 0]\n", "TAGTAAAAAGTAGAATACTCAGAGCACGGTTTCTCAAATCGCGCGATGAACATATCCTACACCTGTCTCTCGTACTAACGTGTCAC\n", "\n", "idx 5 locidx 265\n", "38 T\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "43 (38, 5, 5, 0)\n", "[ 0 0 25 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 25 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 25 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 25 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 25 0]\n", "GTCCTGATGTGCCCCCACTGAATACGTCTAGTAGCAATTAGGAATGAGTGGGTTTGACATATTAGTAGCACAAAGTCCCTACCTAG\n", "\n", "idx 5 locidx 266\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 22 0]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 22 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[22 0 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CAGTTCTATTCTAAGAGGACCGTTCTCTGGGAAGAATCCGGACGCGTGACACACGTCACTCAGCAGTCGTGCTTGTTTATTAGACC\n", "\n", "idx 5 locidx 267\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[20 0 0 0]\n", "24 G\n", "29 (24, 5, 5, 0)\n", "[ 0 0 0 20]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[20 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 20]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 20 0 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 20 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CATTAGGGCAATTTCGCGACAGTCGGAAGCTACGCCGGGACAACGAGTCAAAAATACCGCGAACGCTTCAGGATGATATTTAGTTG\n", "\n", "idx 5 locidx 268\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 17 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 17 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CCGTAGGGAATGAAATAACTACCTGTGCCGCCCTCTATGGGCGAGGTTCCCAAAACAACTAGAGTAGTATAGGTAGGGAAGGCTGC\n", "\n", "idx 5 locidx 269\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 21 0 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[21 0 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 21 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 21 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[21 0 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[21 0 0 0]\n", "ATACCTAGGGTACCATTTTCCCATCACGCAGGCGCTCTGGCTATACGGTTCCATGCGTGAATTTTAAGCGCCGATAAGGCCCGGCG\n", "\n", "idx 5 locidx 270\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 19]\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 19 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[19 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[19 0 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[19 0 0 0]\n", "GGTTTGTAATCACCGCCCTTCGTTTCTCTCTCGTTTCCGTGGGGCTCCGAATTGCCCTGGTACTCTAAAGTCACATCGTAAGTAAA\n", "\n", "idx 5 locidx 271\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 21 0 0]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 21 0 0]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 21]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 21 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[21 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[21 0 0 0]\n", "TGGCCAGCGCCGTCAAAAACGGTCATGTCTGACAGTATGAAGTCATGAGACCCCGGGAAGGTTGGTACCACGCTGACATTATCCAC\n", "\n", "idx 5 locidx 272\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[18 0 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 18 0]\n", "61 K\n", "66 (61, 5, 5, 0)\n", "[0 0 9 9]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 18 0]\n", "ACGTTTTGCCGTAATGGTTTCGGACACATTGGCCTTTTGCGTCTCCAGTTTGACGTCGAATKTGCAGGTATGTAGTAACCCCGATC\n", "\n", "idx 5 locidx 273\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 23 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 23 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 23]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 23 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 23 0 0]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[23 0 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 23 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 23]\n", "GCTTCAGCCAGCCTCCGATGTTTTTGGTTATCTGGGCATTAGCCGGGAAAAACTACGACCATGCACCAATGTACTTACCGGGTACG\n", "\n", "idx 5 locidx 274\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 22 0 0]\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 22 0 0]\n", "GCGTAATGTGGGTCGACCGCCAAAAACATAAAGAGACTAGCCGCTCCTATACACGCGCAGTGAAGCCCGTATACATGGAAATTTTG\n", "\n", "idx 5 locidx 275\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[23 0 0 0]\n", "AGCGCTGTAAGTACGAAACGCTACTCGAGCTCTACCGTCCATTCAGCCTACCTTACGTGTATTATAGGTTAGACCGACACCCGGCC\n", "\n", "idx 5 locidx 276\n", "35 R\n", "40 (35, 5, 5, 0)\n", "[ 0 14 0 10]\n", "38 y\n", "43 (38, 5, 5, 0)\n", "[10 0 14 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 24 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CCCCAATGGATCGGCGCACGTCCAGATACGGTGGCRTCyAGCCTCTATTTGCTCAAAGGAAGATATTGTTCAGTTTTATCCAGCCG\n", "\n", "idx 5 locidx 277\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 18 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 18 0 0]\n", "CACTTCAGACTCTAAAACGGCGCTCTAAATCTATAGAGATCCCGGCGACTTTTCGGATAAGTTCGGTTACCGTTTACCACGACCCA\n", "\n", "idx 5 locidx 278\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 18]\n", "GATAGCTCTGACGTAGATCCCTACCTGATGCGGCCGTTAAGTCATTGCTGCGCACGGATTCAGCAACTTTTCGCATAGTGATAATT\n", "\n", "idx 5 locidx 279\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 17]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 17 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 17 0]\n", "ATGGGTGAATCTACTATAGCCGTCCCAACCGGGACCGTTGATTCCTAGGAGGATGCAGCGGAGCTTAAATGTGGACCTTCCTCACT\n", "\n", "idx 5 locidx 280\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 19 0 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 19]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 19 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[19 0 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 19 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[19 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 19 0 0]\n", "ACTCTTCCTCGTTGGGGTTTGAGATAACCACCTCCTGACCTCATCAAACTTTCGTCCCTGGCAACGGGCCGCGTAGCACCTATCCA\n", "\n", "idx 5 locidx 281\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 20]\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 20 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 20]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CGGAGGATCAATAGGCATATACCGCAGATTCCCCCGGAGTTACATGGATAGCTGTCGTGCATACTACGAGTAAGTCTAGCCTGCGC\n", "\n", "idx 5 locidx 282\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 21 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 21 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 21 0 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 21 0 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[21 0 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AGCGATTTCGGTGCAAGGCTCCCGGTTAACTAGGATATACGCTGAGGTCCGACAAAAAACGCTAATAAGTTCCAGCAGCTATACTC\n", "\n", "idx 5 locidx 283\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 23]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 23]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[23 0 0 0]\n", "GGAAGCTCTATTAGTCACTCGCGGGAGAACGGGGGTTAGCCGGGGGCCAGCTCGGAGCCTACTAATAAGTCGTGCACTTCGCAAAG\n", "\n", "idx 5 locidx 284\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 20]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TTAGCGGTACGTTCGCAGCTCGGCCATAAAGCTCCCTGAGCAGATGTGCCACATCGCTGCGGAGACGACGGTAGAGAGAGGGACGA\n", "\n", "idx 5 locidx 285\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[16 0 0 0]\n", "CACTCTAGAGGGACCCAATGGTCCCAATAGTCAATATCTGGAAGCGTCTTGAATCCCCGGGGCTCCGAAGGGAAGTGCAGGAGACG\n", "\n", "idx 5 locidx 286\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 14 0 0]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 14 0 0]\n", "TAGACTTAAAACAAGGCTCTATGGCCCTGGTTATAAATCCATCAGAGAAGTATTTGTCTCCTAGGGTAAATTTATCAAGCACCGGG\n", "\n", "idx 5 locidx 287\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 1 0 20]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 21 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 21]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[21 0 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 21 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 21 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 21]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AGGACCTTTCGTAACTGAGACATGAATGAAGAAGTCACACAGCGCTGAACAGTAAGGGGGAGCACACTTCGCTCGATCCCGTACCG\n", "\n", "idx 5 locidx 288\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[17 0 0 0]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 17 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 17]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[17 0 0 0]\n", "ACGGAATTAAGTATCCCGTCTTAATCGCCTCCACTCCTGCTAGCCAACAGTGGAGATTAAGACTTCGGCCCACCACTGTATCAGCT-\n", "\n", "idx 5 locidx 289\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 23 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[23 0 0 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 23 0 0]\n", "ACGCGCGCATTAGTTAATCGGGCGCGAGGAAACGTAGCAGCAAGTATTTCAGTAAAATTCCCCTGCCCGCGAAATGCTCAACCGGA\n", "\n", "idx 5 locidx 290\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 20]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 20 0 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CAACCCGACTAAGATGGCTTACGTATGGGTACTAGCAGGTATATTAACGTTGTACGACAGTGCCTATACTTTCCAGTGCATCGGGG\n", "\n", "idx 5 locidx 291\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 18 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[18 0 0 0]\n", "42 R\n", "47 (42, 5, 5, 0)\n", "[ 0 12 0 6]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 18]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 18]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 18 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 18]\n", "AGTGTGTTGCCAAGTGAAGACCTCCCCTTATCACATGATCTTRCCTCGGGTCGATGGATACGATTGCTGCGTTCAAAATGAGCTAC\n", "\n", "idx 5 locidx 292\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[22 0 0 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[22 0 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 22]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[22 0 0 0]\n", "CATACCGACCATAGCTCGCACGGTTAAAGCAGAGTCGTACCTTCTGTCGCTGGAGAAGGCACGAGAGACTGGTATGCTAGTTGATC\n", "\n", "idx 5 locidx 293\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 19]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 19 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GAGTGTTATTGATAATTGGCGTCCGTCCTGACATCGAGCCGAGGGCAGGAACCTTGAGAAGCAAGACCCACCTGAGGGAGGCTCGC\n", "\n", "idx 5 locidx 294\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 13]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 13]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[13 0 0 0]\n", "ATTGAAAGGCGAGACTGTAGAATTCATCTGGATTTCTGGATGTTGGGTGTTGAAGTCAAAAAGTCAGGAACTACGCTAGCTAGCAG\n", "\n", "idx 5 locidx 295\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[22 0 0 0]\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 22]\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 22 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[22 0 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 22 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 22]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[22 0 0 0]\n", "CCCACACTCAAGCCAGTACGCTTGGACACGGAGTCCCTCGAATTCGACCATGAAAAGGGCCAATAGGTTCAGGTTGCGTTTCGTCA\n", "\n", "idx 5 locidx 296\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[19 0 0 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[19 0 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[19 0 0 0]\n", "CCAAAGAGCATAATAGAGCATAAGTCTCTGCGGCCTTAGTCGCAGTTAAGCGACAGTCGCTCAGGCCAACGAGGAATTAGCCCCCT\n", "\n", "idx 5 locidx 297\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 19]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 19 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 19 0 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 19 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 19 0 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 19]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 19 0]\n", "ATCCCTCGTCAAACAGTCAAATGGATAGAACCCAATGCTATTATTAGGGCTTGGAGAACGTCTATACTGCCGGTAGCGCGCATCGC\n", "\n", "idx 5 locidx 298\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 19 0 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 19 0 0]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 19 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[19 0 0 0]\n", "CGCCTCCAGTGGAAACTCGTAAGTGTGACGTCACTGTACATTTAAGAGCAAACTTCTATGAGCACGATCGGTCCTGAGTTACGATG\n", "\n", "idx 5 locidx 299\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[19 0 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 19 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CCCAGGAAAATGAATGCGACGCACAGGACGGTCCGTTGTTGATAGCCTGCGATGCTTGTGCAAATGGACGTCAGACACTGAACCGG\n", "\n", "idx 6 locidx 300\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 21]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[21 0 0 0]\n", "GAAGATAGTCTCGTACTGTGTATGTCTTTAGGCCTGACCGCAACCATACGTTATTTCACAAAGTCCTGACGAATGCCAACATTTAC\n", "\n", "idx 6 locidx 301\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[21 0 0 0]\n", "TTCGGGGCCGCCTCTGAGTGCGTCGAGATTTGGTGTCTAATGGGACGACGTTGAGGAGGGCCTCGGAGATCACCAATGAACGTGCC\n", "\n", "idx 6 locidx 302\n", "5 A\n", "10 (5, 5, 5, 0)\n", "[ 0 17 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 17]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 17]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[17 0 0 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 17]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 17 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TTTATATCCTGGTGCTCGGATCCCCAATCAGCGGCGCAATTAAGGGCATAGCAGAAGGGAACGGGACGCGGACAGAATAGCATCAT\n", "\n", "idx 6 locidx 303\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[20 0 0 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 20]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 20 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 20 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 20 0 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 20]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 20 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AATCTCGTGCTTATCTGGGTAGGACTTACGCTAGCGCGCACATCGTCGAATGGGAGCCGCTAGACGTTGATGCACACTTCTAGAGG\n", "\n", "idx 6 locidx 304\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 22 0]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 22 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 22]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 22 0 0]\n", "ACGTGCATGCTATCATGCTAATATCCCGGGGAGCCTCGTCGTGACTGCTTGGTTCCTGAAATCTTATTAACTCCCGCATGTCCGCC\n", "\n", "idx 6 locidx 305\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 21 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 21]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 21 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GATCAGATCGGAGGGAAGCTAGCGAACTGTCCTGACCGTGATTTTTGTGTCAAAAGACGCCTGTAGCAGGGGAATGGGACCATACG\n", "\n", "idx 6 locidx 306\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 21 0]\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 21 0 0]\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[21 0 0 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[21 0 0 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CTAATTGAATATCATCGATTTCCAAAGTTATTTGTGATCCAGGTGGACAAGAAGGTCATCGGATGGCGGTTGTGGAAGGATCTAGT\n", "\n", "idx 6 locidx 307\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[17 0 0 0]\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 17 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[17 0 0 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[17 0 0 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[17 0 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[17 0 0 0]\n", "CTCCGAACTCAGGTAGTGGACACGGTCTGCAACTTGGTATGCTTTATCCCCCATGCACGCCACTTCATCGGCGACTCTGGATAATG\n", "\n", "idx 6 locidx 308\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 16 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[16 0 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 16 0 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[16 0 0 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 16 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 16 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[16 0 0 0]\n", "GGCGATGAATCTACTTCTTAAGTGTAGTATTTGTTTATTCCCTAATAGGCCGTCAGAACCAATAACGTCTGATTATGGTAACATCA\n", "\n", "idx 6 locidx 309\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 19 0]\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 19 0 0]\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 19]\n", "ATACGATAAGATACTTACAGAACTCGCACGAACCAGACATACCTTTATCTCGGTATACTCTCGCCACTACCACGTCATACTACCCA\n", "\n", "idx 6 locidx 310\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 20]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GCATAATCGGCCTTGCAGTTTTGCAATTCAACAAAACAGACCCTCAACCTACAGTGACATTGGTAGCCTGCCTTAATGTCTCGAAT\n", "\n", "NOT HERE\n", "idx 6 locidx 312\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 21 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 21 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CGCGCGGGGTTGCGCACGCGCTCATACTGTGGATTCTCTAATTAATGAGAGTTGGTATTCTGGTGCGCGAACATTCTGGTGCACGG\n", "\n", "idx 6 locidx 313\n", "6 W\n", "11 (6, 5, 5, 0)\n", "[ 0 11 11 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 22 0]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 22 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 22 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 22]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 22 0 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 22 0 0]\n", "AAGTTTWGCGGTAATCCTCCCATTGCAATTTACTGTGCCGTGAACTCCGGGAACGTTACTCATTAGTGGGTAAGTCACGACGCCTA\n", "\n", "idx 6 locidx 314\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 23]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[23 0 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CCCTGGTTCGGCGTGAGTGCTACCACTCTGGGCTGCTGGCCACCATTAACACTATCCTCATAAACCAACTACCCCAACGTAAGCAC\n", "\n", "idx 6 locidx 315\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[21 0 0 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 21 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 21 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[21 0 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CACGTATGGGGGACGATCGCAGAAGGTGATAGAGTTCTGCTCACCCCGGAACCTACGAGTCAGTATTTAGTTACCTTCTCGACAGG\n", "\n", "idx 6 locidx 316\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CCGTTGGACCTTCTAGTCAGTTGGCGTTGTCCAACTAGCCCCTACTCTAATGCTCTCACGCCTCGCATCATCGCCGGCGTTCTAAC\n", "\n", "idx 6 locidx 317\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 21]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TCTTTGGGGTTAACAACTTAGGGGCAGGGTTCGGGTGCACAGTTAGGTAAGGCCCGCACATTTTCCCAGTTAGCGTTTATAGCACG\n", "\n", "idx 6 locidx 318\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 21 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 21 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[21 0 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 21]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[21 0 0 0]\n", "TTCCTCGCCTGTGGGTATCGACACGGGAGCCATAGTCTGCGGGACCCCTGGATCCCAGTAGCAAACTCCTTGCTCAACCAGACCTT\n", "\n", "idx 6 locidx 319\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 16 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[16 0 0 0]\n", "CCCCAATAGACTGGAGTGACCAACACTCCGTGACGGGATTTAGTTTAGGCACCCAGGAGTGATCTATACAAACTTGAAGACAGAGG\n", "\n", "idx 6 locidx 320\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 20 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 20 0 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 20]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 20]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 20 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[20 0 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GATCTATTAGTGTTACGTACATTAATGTTATAATACCAGATAGCCTAAAGGAGCCGATCACTGAACTTGTGAGGCATAGGTCCTCT\n", "\n", "idx 6 locidx 321\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 20]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GCCTAATCTGCGTACGAACGCGGTTCTGACACGCACATATGATCCAGGATCAAATTAAGTAGGTCCTGAAGGTGCGATAGGTTGCG\n", "\n", "idx 6 locidx 322\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[14 0 0 1]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 15 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 15 0]\n", "CATTTACTTATAAGCAACATAGCCAGGATGTCTACAACCAGTCGGCTTTGACGATGTACATCGAAAAGGGAATACAGCATAGCATA\n", "\n", "idx 6 locidx 323\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 21 0 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 21]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 21]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 21]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[21 0 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CGATCTAGCCGTAAAAGTTGCTTGCAGAGCGGAGCACTGCGGGGCAATCGCCTGATATATCCTAAAGCAGGATCAGGCCGTGTCGT\n", "\n", "idx 6 locidx 324\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 21 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 21 0]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CTAGCTCAGGTCGCAAGCCGTCCCCCTGGGTCGACTACCGCCCCAATTGTATGAAGACCAAGGGACCAGGCCATGCATGGTTGCGC\n", "\n", "idx 6 locidx 325\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 17]\n", "36 T\n", "41 (36, 5, 5, 0)\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[ 0 0 17 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 17 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CGGGGCCTCAAAGGGTACGCAGTCTGTATCCATCACTAACCACACCTGAGATCGGAAGAGGTGTTGTGAACTATGGGACCTCAGAG\n", "\n", "idx 6 locidx 326\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[23 0 0 0]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 23 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 23 0]\n", "GACCCCTATATACAACCTGCAGACAATTCAATCGGGGGTATCAACTAATAATGGGATGGGGTGCAGTATAAAGTCCAACGACGGCA\n", "\n", "idx 6 locidx 327\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 17]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 17 0 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 17]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[17 0 0 0]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 17 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CTTGTGAATCTCTTTAGCCTAGTCGTAAAGAAATAATTCGAAAAAAACCAACAGTCTTGTCGTCGGCTTCTTGATATCTTCCAACG\n", "\n", "idx 6 locidx 328\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 14]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[14 0 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[14 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 14 0 0]\n", "TACAAGCTGGCCACGCTTCAGATAATGCCAATGCCCTTTCTAGCAAGTAGAGCTCTACTGGGCTTTAGATGGAATTTGTTTAGTAT\n", "\n", "idx 6 locidx 329\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 21 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[21 0 0 0]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[21 0 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CGCGGATATCGATCATTGCCCCTTTAACTGCCTGCTAAGGATGCTCCACCCAGGCTCCACGAGGTCCCGCCTACCCCCCACCTGAC\n", "\n", "idx 6 locidx 330\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 19]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GCAAGTAACGCGCTCGTGACTCGATAAGAGTAGCGCGGTATAGGCCTAGGGTAGATGTGTTCCAATTGAATACTCTCGCCCGGCCT\n", "\n", "idx 6 locidx 331\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 24]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[24 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[24 0 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 24 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CGGCGAATTGGCCTGTATACGTTAGCCCTGTGCATTACCGCCTGCGGCAGTGAGAACGGCCCGAATGAACACAGGTTAAACGTTAG\n", "\n", "idx 6 locidx 332\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 20]\n", "10 C\n", "15 (10, 5, 5, 0)\n", "[20 0 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[20 0 0 0]\n", "40 M\n", "45 (40, 5, 5, 0)\n", "[ 8 12 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 20 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[20 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GCGGAAATAACTAGAAGCATTCCAAAATTACTAAACCAAGMTTCATCGCCCACCGTAGCGCACGACCGCTTCACCTAACTCCAATC\n", "\n", "idx 6 locidx 333\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[23 0 0 0]\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 23 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CTCCGGTCCGAAGCTATAGCCCCACCTGTTTAAATAGACAACATTCCATTGCTAGTACGGAGACGAATGTATGAGAGAGGCATACT\n", "\n", "idx 6 locidx 334\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[21 0 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 21 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 21 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[20 0 0 1]\n", "TTGCGTCCCTTTAGGGGCAAGCATTGATGTAAGAATACATGGGCGCCCTTCTTATTACAGGCCCATGGATCGTAGCACGACGGCGT\n", "\n", "idx 6 locidx 335\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 22 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[22 0 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CGCTGCAGCCACCGTCCATGGCTCATTTCGTTATATCACTAGCGTAGTGAGGACTGCGATTCGAGGAGCGCCTTAAATTAAAAAAA\n", "\n", "idx 6 locidx 336\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 16 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[16 0 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 16]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 16]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[16 0 0 0]\n", "ATTCAGGGACCAGAATTCACTCGGTGATGCATGTCATCACCCCGTCCGTCTACACCCCAGTGGACGGACTGTCTATGGTGGCTAAC\n", "\n", "idx 6 locidx 337\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 20 0 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 20]\n", "ATCACCATGTAAGTCTGCCGGGCAGATTCAAATATTCAACCAAACTAGAGTTGTGCGGTCCTCGACAATTGTTTTCCTATGTACCT\n", "\n", "idx 6 locidx 338\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 20 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CCTGGTCAATAGCCCCCAATTGGTCGATCCCGTTTATACTTGCAGAACAAATCGTTATATACAAAGACGGATGTGGTGCGAAATAC\n", "\n", "idx 6 locidx 339\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AGCCGACCGGATGATGGGTGGAGGGCTGGGTATCGCCTTAGCTCAACCGATGATGGGGAGTAGCAATCAAGCGAGATCAAACCGGC\n", "\n", "idx 6 locidx 340\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 21]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 21]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[21 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 21 0]\n", "GTAGAAATGTTTCGCCGAGTCACGGTTTGAAGGGACGGTCCGGGTTCCCTAAACCCAGTTGGCTCCAAGCGAGAATGCAGCTGTAT\n", "\n", "idx 6 locidx 341\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[17 0 0 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 17]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 17 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[17 0 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 17 0 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 17 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[17 0 0 0]\n", "TTCAGACTCCTCGTCTGGATCCTGGTTGAGTTGTTCTAATCAGAGAATAGTACCTACAACATGCGACTAATAAAACAAATCGGCGA\n", "\n", "idx 6 locidx 342\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[21 0 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[21 0 0 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CGGCGCGATTGTCTCCAATTCCTGACTTCCACTGCTGACCTTAGGAGCCCCTAGGACATAAAAACAAGTTCGTTCCGTGGCTTCAA\n", "\n", "idx 6 locidx 343\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 22]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 22 0]\n", "GCGTGTCGCACCGTTGGTAATAGTGCCGCCCCTGCCGAGCCTTTGGGAGAGTCGTAATAATAATACTGGTAACTTTCCCTTGAGTG\n", "\n", "idx 6 locidx 344\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 20 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 20]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 20 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 20 0 0]\n", "76 W\n", "81 (76, 5, 5, 0)\n", "[ 0 9 11 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGCACTTCTTATGTGGAGCACTGTATAAGAATTCTCGGTGGAGTGCTCCCTTATACTACAATCCATCGAATTTAGTWCTGTAAGTA\n", "\n", "idx 6 locidx 345\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 21]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 21 0 0]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[21 0 0 0]\n", "TTCTAGATGTGGGCGTCGACCATGCCAAATATACGTCTGCCAAAGAGCGCGCGGGCAAGTTGTTCACTTTGGGGATGCCATGCGAC\n", "\n", "idx 6 locidx 346\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 24 0]\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 24 0 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 24]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 24]\n", "CTAGCAGGAATGACCTGATCTCTAAGCAGAGATTTAGGAGAAAGACCACTGGATTCTGATGCAATTTTAGTGTTCCTGGTCGGCAC\n", "\n", "idx 6 locidx 347\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 18 0 0]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[17 0 1 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[18 0 0 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[18 0 0 0]\n", "AGTGCATTATGAATGTTCGCACCAAACGCCCTGATGCTTGCGAGTTTTTTATGTTAGGCCACAGCAGCGTGGGGCCACATTTCTGG\n", "\n", "idx 6 locidx 348\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 23]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 23 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 23 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CAACGATGAGTGTGGTGTATCCCCACGGAAATTCCACGGACTTCCTTGACCGCAGAGGAGTGCAAGATGAGCCTGTAAGCGCAAAT\n", "\n", "idx 6 locidx 349\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 22 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 22 0]\n", "TACCGTGATGTAAATACAAAATCGAGAGCTTTAATTCATTGCAGTTAGGGCGGGTGCGCATTGCACCAACCGGTTCGTGGTTTAAT\n", "\n", "idx 7 locidx 350\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 23 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 23 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 23 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[23 0 0 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[23 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CAGGTGATTAGGGAAGCTCCCTCGCATCGGAATAAACCGATATCAAAGGGAGACAGAGTCCCTCATGCCGAGCGACTAACGGTATG\n", "\n", "idx 7 locidx 351\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 18]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[18 0 0 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[18 0 0 0]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 18]\n", "GTCGTCAATAGCTGAGACCTAAATTGGTGCAGTTTATTATAGGATTCTCAAGGTAGTTTCTACCGCATCCCCGCTCAAGGGATTCT\n", "\n", "idx 7 locidx 352\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 22 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 22 0 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 22 0]\n", "ACATAGGTGTATGTCTTGATCGACAAGCTCGGGCGCGATGGGAGCTATGTAAGACACCCTAGTTGTTGCTCGTGATAAGATGCAAA\n", "\n", "idx 7 locidx 353\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 15]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 15 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[15 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[15 0 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 15 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[15 0 0 0]\n", "CACGCGGCTGATTCTCGGTAATGGCCCGTGGGGCCACTGTCACACACACGACCTATCAACTGACCAATAGTCCTAAAGAGTAGACG\n", "\n", "idx 7 locidx 354\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 17]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[17 0 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[17 0 0 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 17 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 17 0]\n", "AGTGGATGATATTTTCAGCGTGCCATTACGTCGCGAGCACCTTAGACGGTCGCCAGGCAGTGTCTTTGGATCATTAGGAGTATAAC\n", "\n", "idx 7 locidx 355\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[18 0 0 0]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 18 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 18 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[18 0 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CGCTGTATTAAAAGGGGGATCTATTAACAGCCCTCTATATGAGTAGCTCTCTTGGGTTTGAATTAGTTTTAGGAATGACGTACGTA\n", "\n", "idx 7 locidx 356\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 21 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 21 0]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[21 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CATGGTAGTCTATGGGCCAGCTATTAACTCGTTGAAACTCGATTCACAGGCGCTGAAGTCGATTCATATCAACTCCGGTCGGGTAT\n", "\n", "idx 7 locidx 357\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 19 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 19 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 19 0 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[19 0 0 0]\n", "GGTGCCTTACGACCGGATACAAATCACCGCAAGAGATTCCACAAGTCACTCACTTTTCGGGGGGGAATATTTGAACATATGTGGAC\n", "\n", "idx 7 locidx 358\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[16 0 0 0]\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 16]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[16 0 0 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 16 0 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 16]\n", "53 S\n", "58 (53, 5, 5, 0)\n", "[ 5 0 0 11]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 16 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 16 0]\n", "AGTCCTAGGTAGAAGGCGGACAAACGAAAGGTATGTCAGCCTAGCTTACCTTASAGGATTTTACAGTTCTGGTATCATCTTCTATT\n", "\n", "idx 7 locidx 359\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 18 0 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 18]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 18 0]\n", "70 C\n", "74 (70, 5, 5, 1)\n", "[18 0 0 0]\n", "74 G\n", "78 (74, 5, 5, 1)\n", "[ 0 0 0 18]\n", "GGAATCTGATCATTGTGAAATTCGAGCTGAAAGCTAGTAGGTGGCCTACT-TCCTTATGTGAGCCGTGATCAAAGAC-ATGAACGG\n", "\n", "idx 7 locidx 360\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 20]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TAGAAGATCGGTATATGCATACGGAGGCTATTTAGAAAGTCTGTTAAGTGCTACAGGCTCACCCTGTATACAGCATCATTCTCGAC\n", "\n", "idx 7 locidx 361\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 22 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 22]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 22]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 22 0]\n", "ATATTAGAGGGGTGGATCCTCCACTCCACAAAGCTCGCCAGGCGTTCAGCACTTCTAGGCTCTGTGGAGAACCCTTGATCCCTTAG\n", "\n", "idx 7 locidx 362\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 21 0 0]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 21]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AACTTAAGCGGAAGGAGGTCGTAGTACGACATTCGGATTGTATTGTGGTCCCGAACTTAAAAGCCCGGTAATACGAAGGGAAACGT\n", "\n", "idx 7 locidx 363\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 22 0]\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 22 0 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[22 0 0 0]\n", "TACATTGGGATCTGACGGGGAGAAGTACTTCGGTACCGACTTTGAACGGCCGTGACTAATATCTATTAATTCACGGCTATTCCGCT\n", "\n", "idx 7 locidx 364\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 17 0]\n", "GATGGTGCGTCCCGAAGTGGTGTCTTAACTGAGTGACAATCTGCCGGATTTAGATCCAATTTGCGGATTGGTAGCGAGTCCCCGGA\n", "\n", "idx 7 locidx 365\n", "10 C\n", "15 (10, 5, 5, 0)\n", "[17 0 0 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 17 0]\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 17 0 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 17 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 17 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TGTATATGCCCTAACGTTGTATATAGGTCTAACTATTGTAAGGACGACGGCGTGCAATAAGTTGTTATGTTTTGGGTTCACGGTAT\n", "\n", "idx 7 locidx 366\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 25 0]\n", "34 W\n", "39 (34, 5, 5, 0)\n", "[ 0 13 12 0]\n", "AGCATTAAGACGCATCCGCATGTCCGGGTCCAATWGTGAGGGCGAGAGGATACGATAAATATTTACGCCGGAACTCGGTTCATAAA\n", "\n", "idx 7 locidx 367\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 24 0 0]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 24 0 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 24]\n", "TGATGCACAAACTGACGTAGTGCTTCGTGACGTGATCCGTTTCGACCAAGAAGCATTGTTTATCATTTCCGGTTGAAAATAGATAC-\n", "\n", "idx 7 locidx 368\n", "7 S\n", "12 (7, 5, 5, 0)\n", "[10 0 0 10]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 20]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CTATATCSAATGATGTTACTGAAATAGACGTGAGAGATCCGGCTCCAACCCTATTGGATGGCGTTATGCATCTTGATATATATACG\n", "\n", "idx 7 locidx 369\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 20 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[20 0 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 20 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[20 0 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 20 0]\n", "TTCTCTATATATTCACCAGGACACCCAGCCATCCTACAACGAACGTCTACTAGCCGTTAATCGTAACCCTTCCATTTCGCGTCTTA-\n", "\n", "idx 7 locidx 370\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 23 0 0]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 23]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 23]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 23]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 23]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 23 0 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 23]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 23 0]\n", "CGTAGTAGGTGCGAGCCCTCGGACAGCCTCGCATGGACCTGCCTAGCCGATGGTCTCCGCCCCCTAGCACGGCCGGGTGAATGGAT\n", "\n", "idx 7 locidx 371\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 21 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[21 0 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[21 0 0 0]\n", "CTCCCGCCTTAGTTGAGCGACTGTTTTGCTAGAGGTTCTCCAGACAACCTTTCCACGGCACGAAAGGCTAAGCGGGCGCTTCATGA\n", "\n", "idx 7 locidx 372\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 21 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[21 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[21 0 0 0]\n", "GCAACCGCCCTGGCGATTAGTAGTGGACATGATGTGCCCACAGTCAGCGTTCTTGCCCTGCCCTTGTAACGGGGTGTGGGCAACCA\n", "\n", "idx 7 locidx 373\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 22]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 22]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[22 0 0 0]\n", "CGACGGAATTCATCATTCTGCCGGTATCGTAGCCCGAGCATCTGGTCGGACTTGAGTGTTAGATGCAGTGTCGATAGCCGCCGTAA\n", "\n", "idx 7 locidx 374\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 19 0 0]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 19 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[19 0 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 19]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 19]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CGCGATCTGATACCCTCGTGTGGAGCACGATGAAAAGAAACACCATCTAATACCAGAATGGCAAAGGCGCCCCAGAGCTAAATAGT\n", "\n", "idx 7 locidx 375\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 20 0]\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 20]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 20 0]\n", "26 S\n", "31 (26, 5, 5, 0)\n", "[10 0 0 10]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TGTGAACGTGTTGGGATGACGGTAACSCTCGAGTGTTGTGGGGATTGAAGAGCCGCGCTACTGGGATGGCGTACATCCTATCACTA\n", "\n", "idx 7 locidx 376\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 17 0]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 17]\n", "38 G\n", "43 (38, 5, 5, 0)\n", "[ 0 0 0 17]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 17 0]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[17 0 0 0]\n", "AAGCTCGAGTAGCGTAGTAGAAGCGTAATAACGCTCAAGACTACCTACATTCAAATAGACACTGAGGCATATGAAGGTAGTCTCGG\n", "\n", "idx 7 locidx 377\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 18]\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[18 0 0 0]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 18]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 18 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 18 0 0]\n", "75 R\n", "80 (75, 5, 5, 0)\n", "[0 9 0 9]\n", "AACACGTCCTCCAGACGGTACTAAGTGACGTCATGCTCCGTGTGATGGTGTCTCGCGCTCTTACCATTGGAATCGRGTATGGTCGT\n", "\n", "idx 7 locidx 378\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 29 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[ 0 0 29 0]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 29 0]\n", "ATTGAACGGGTATCTAGACCGAGTTAGTTTCATCAGTGGGAAATATGCGCTAGGTCGGCGTTGCCATGGATTAGACGCGACGAAGT\n", "\n", "idx 7 locidx 379\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 22]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 22 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 22 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 22]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[22 0 0 0]\n", "AAATGGCCGGAGCGCTTATCTCTCGATATCAAATCGGGATTCCGGTGAAAAACTGTCAGGTTACCGTCCGGGCCCGCTTTCAGTCT\n", "\n", "idx 7 locidx 380\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 18]\n", "61 M\n", "66 (61, 5, 5, 0)\n", "[ 8 10 0 0]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 18 0 0]\n", "CCTACAGCTCTAAAGCCATCGGATGACTCTTAGGGTGCGCGATACGGTTACGCAAGTGGACMAATGATCCACGTATCATTCCCTAA\n", "\n", "idx 7 locidx 381\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 18]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 18 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[18 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 18 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 18 0]\n", "TAATTGTTAAGACTTGGAAGCGTAGGGAGACACCTCCCTAGTGGAAGGTGGCGCTACCTCAGGAGCCATATCAGGCATGGGTTGCG\n", "\n", "idx 7 locidx 382\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 17 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 17]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 17]\n", "ACCATAATGGCATGGTGCCACAGCTAGGGACCGATCTCTTTCTAAACTACATCCCCTAGGTTGAGACCCATGCGTGCTCTAATTGG\n", "\n", "idx 7 locidx 383\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 20 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[20 0 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 20 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[20 0 0 0]\n", "GCGATATTGTATATCAATGGATAGAACTCCACATCCCCCCGCCCGCCGTTAGGCCTATTTTGGTGGGAAGACACTCTTCCCAGGCA\n", "\n", "idx 7 locidx 384\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 22 0 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 22 0 0]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 22 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 22 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 22]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[22 0 0 0]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 22]\n", "ACACCAGTTGAGACCGGATAGCACATACGTGTGCCACACTGCGATTGAGGCACGTTTGAGGGCGTCTTTAACGCTCTTCCGACCCG\n", "\n", "idx 7 locidx 385\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[21 0 0 0]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[21 0 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[21 0 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 21 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[21 0 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 21 0]\n", "GGTTTCTTTCTAAAGACCCACACCATGTCCACGGTCTATACAAGCCCGGTTCCGATTGGACGCTACCTCACATGAATCTAGCGGCT\n", "\n", "idx 7 locidx 386\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 19 0 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 19 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[19 0 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 19]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[19 0 0 0]\n", "CCCAAGGAGTACAACATCTAGCTATAGATGAAACCAATTGGAGTTTGGTCCGTCGGCAGGTCACCGGATACCTGTCCGTTCGATCT\n", "\n", "idx 7 locidx 387\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 17]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 17]\n", "GGACCTCCCCACGCGTTTTGGTAAGATCAGGTTCAGTCAGAATTTGCCCAGGTGGAGTAGCGCCCGCATCAGTTCGTGCGATATGT\n", "\n", "idx 7 locidx 388\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 18]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 18]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[18 0 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[18 0 0 0]\n", "TACACAGAAGCAAAATGGGCTACACTGCACCTCTGGATCAAGCTTGCCCAATGACTGGTGTCACATTTCGAAAGGCTGCAATAGAC\n", "\n", "idx 7 locidx 389\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 16]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 16]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 16 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TCTGTTTCTGATGCTATGTTTGGCCTCTGGATAGACGTGCAGCCCGCGAGGTAGAAACCCAGGACCACGTGGTGTGAAACTGCACG\n", "\n", "NOT HERE\n", "idx 7 locidx 391\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 18]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 18 0 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CCACCGTCGCTGGTAAATCAGATCGGTCGGCATCGCACATCCCGTGGACAAACGCGAAGCCCGAGAGGGCCCGAATTTGCGCACGC\n", "\n", "idx 7 locidx 392\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 22]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 22]\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 22 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 22 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 22 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GCTAAATCCATTGCAGAGTTGGCGTGTCCTTTTCCAATTTCATATTTGGAGGCGCAGCTTGTCCTTACGCGCATTGGACGCCGATG\n", "\n", "idx 7 locidx 393\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 22 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 22 0 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 22]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 22 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 22 0 0]\n", "TAAGCGGGAGAACCCTCGGTGGTCCGCTTATGCCTGGTTTTGCTGTTGAATCTATGTGTTTCCTCCTATAGATTTGACTGATCGGT\n", "\n", "idx 7 locidx 394\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 19 0]\n", "GAAGACCGTCACGTCGGGCCCATCAGCGAGACACGCGCTTCCGAGAACTCCAGGTTCTCGGAGCATTGCCACGGCGAAATTCTTGG\n", "\n", "idx 7 locidx 395\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 14 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 14 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[14 0 0 0]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 14 0 0]\n", "TTGGGATGGCGATGCCGTACATAGGCGCATCCAGCCTCGGTCATTGTCGGAGATCTCACCTTTCAACGGTTGACGATGACAAGTGG\n", "\n", "idx 7 locidx 396\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 19]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TGGCGATGAGCCACAGCCCTTCTAGGCGGTCGAGGAGGTGACAACTTTTCCGTTATAACTCAGACCTGCCGTAGCACTGGAAGAAA\n", "\n", "idx 7 locidx 397\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 20 0]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 20]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[20 0 0 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 20]\n", "ACTAGCCGTTTGAGCGAATTTTATCTGATAAGCAGGTCCCGCAGGATTCTCCCGCCCTGGTCTCGCGAGTCCACCTGAGTGGAGAC\n", "\n", "idx 7 locidx 398\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 22]\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 22 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GCGAAGCCCAGCATGTAGTAGGCACTCCGGACGCGACCGGTTGTAATCTAGGACGCGTGAAATGGGCAATTATGGCCTGCCTCCGT\n", "\n", "idx 7 locidx 399\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[19 0 0 0]\n", "GTGATACCGCTGCGGACGCCACCAGCAAACGACGGTACCGGTTACGACGTGTTCTCTGAAAAGGGATGATTGGAGGAACCTGAAGA\n", "\n", "idx 8 locidx 400\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 23 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 23 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 23]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 23 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[23 0 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 23]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 23]\n", "GGTAGGCGAAAAGGTAAGCCCGCATACCTCTCAGCTGATCTTGTCTTTGGGTCCAATGCAGTAAGCTCAGTGGTCGTCCGAGAGGA\n", "\n", "idx 8 locidx 401\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 16 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[16 0 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[16 0 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 16 0]\n", "GTTAGAGCGGCAACATCAGCGAGTGCAGCCCCGGGCGAGCGCGTTCGCCGTGCCGTGGCCTCAGCCGGATGGGTCAAGATTTCTCC\n", "\n", "idx 8 locidx 402\n", "13 M\n", "18 (13, 5, 5, 0)\n", "[10 9 0 0]\n", "40 C\n", "45 (40, 5, 5, 0)\n", "[19 0 0 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 19]\n", "ACGCTTAGCCTTCMTGGGAGGCCTGAACTGGCCATTACGGCCAGTGAAAGATATAGCGCACCAGGCGTCCACGCACGCTGCCTGG-A\n", "\n", "idx 8 locidx 403\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[18 0 0 0]\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 18 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 18 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 18 0 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[18 0 0 0]\n", "AATGCGAACTCTCGAAAAGCCCTCAAAACCCCAAGCATTGATAAAGCCCATTTCCCCCCTTCAGGGATTACAAAAAAGTTCGAACT\n", "\n", "idx 8 locidx 404\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[22 0 0 0]\n", "TTCCGTCCTGAAATAATATGTCCTTCCATAGAATTTAAGTGTTGCTGGAAAACTGACGAAATCCTTGTTAACACAGGCGTCAGAAT\n", "\n", "idx 8 locidx 405\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 23]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 23 0]\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[23 0 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 23 0 0]\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[23 0 0 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CTCCTTTGCATGCTCCCTAGCCGAAAGCTAACCTCTCTATCTTACCCCATTCTACGTAGAGACAATTGAAATCACAACAACGTATG\n", "\n", "idx 8 locidx 406\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 23 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 23 0 0]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[23 0 0 0]\n", "TCAGATTTGTCGGCGGGTGATCCCTAGATCGGGTTACAGTATGGTACCTAATTCCACATCCAAACACTTAGGACTATTAATCAATG\n", "\n", "idx 8 locidx 407\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 20]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 20 0 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 20]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[20 0 0 0]\n", "AAACCGTTGCTGACGGCCGCCCGCCCGAACATCATCAAAACGTGGTATTCGCATGGCCGAGCCCAGTAAGCCGCCTACGTCTAGCT\n", "\n", "idx 8 locidx 408\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 23 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 23 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 23]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 23 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 1 22 0 0]\n", "TACCAAACAATGTACCACTAGGACACCTTGCGCTAGTGGTCCTCAAGTGCGGAGGCGTTCTCTAGAATGGTACAGATGTCGACACC\n", "\n", "idx 8 locidx 409\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 26]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 26]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 26]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 26]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 26 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[26 0 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 26 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 26]\n", "CATTAGGCTAAAAGTGTTACCTTGCGCGCTGGGTAGTGCAACACTAGTACAGCTGTGGCAGATATAACGGCATTGTCTCCGGGTCA\n", "\n", "idx 8 locidx 410\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[21 0 0 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[21 0 0 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 21]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 21 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 21]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GAGCGTAACGTTAGCATTGATTTACTCCTAGTGCACCTAGTCCCCTAGGGATCACCCGCGATGCAGTTCTTGAGGCGGGTGGACCA\n", "\n", "idx 8 locidx 411\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[22 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 22 0 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[22 0 0 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 22]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[22 0 0 0]\n", "AATTACTGGTGATCCGTAGCAAGAACTGCCCACTAGCAATACCCCTAGGACCCAGCACGGGTTGTTACTCCTGGTGACCAGTCCGC\n", "\n", "idx 8 locidx 412\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 21 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 21 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 21]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 21 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 21 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[21 0 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 21 0]\n", "ACTAGGCACCGATCAAGTGTGCTGGAGCGAGTGATAGCTTGTATCATAAAAGTGTATGCGCTACACCGATGAAGAATGAGCGCCTA\n", "\n", "idx 8 locidx 413\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 20 0]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 20]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 20]\n", "22 R\n", "27 (22, 5, 5, 0)\n", "[ 0 8 0 12]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[20 0 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[20 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TAATATGTTGGTTCAGGTTCTCRACTACGTGATGACTGACCGCTATATCTCTGTGCGAGGAAACCCATTCATAAAGGTGATGCCAA\n", "\n", "idx 8 locidx 414\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 17]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 17 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[17 0 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 17]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 17]\n", "GAGCGGTGCTACGTCGTGATGCCTTCACCCTCAATGTTAATAGCAGGTCAGGGCCTAATTTGATAATGACTAACCTGTAAACCTAC---\n", "\n", "idx 8 locidx 415\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[19 0 0 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CTCTAGCACATTCGATCGGATACCCCACCTTCCCTGGATTAGCGAAGTTGGGTCTCGGTGATAGACGTCATCCAAGGTGATCCGGG\n", "\n", "idx 8 locidx 416\n", "13 K\n", "18 (13, 5, 5, 0)\n", "[ 0 0 13 7]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[20 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[20 0 0 0]\n", "ACGTTAAGGTATGKACCGCCCCACACCTGACGCGCGCGTATGGCACCCAAACGCTGGCACTCACCCAATCGGTCGAAATTCTCCGT\n", "\n", "idx 8 locidx 417\n", "64 W\n", "69 (64, 5, 5, 0)\n", "[ 0 9 12 0]\n", "TAACGGATAGATGCGGTGTTTAGCGGCTTTGTATGCGAGATTCTGCGCGTACTACTTGTAAATCWGCTTCTGAAATTGGTCTTATC\n", "\n", "idx 8 locidx 418\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[19 0 0 0]\n", "CGAGCAGACTGCGTCTCGGTAGCATCGAAGCCAATCGTTTGAAGCCTAAGTTAGGAAATCGGGGCACAACGTAGATACCTATTTTA\n", "\n", "idx 8 locidx 419\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 17 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[17 0 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 17 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[17 0 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 17 0 0]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 17 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 17 0]\n", "GTCTTTACGTCCCATTACGTCCACGTCAGAGTAGCTCAGAAGAAGCTTCCCACGTTGTTGCTACAATGCACATTATTCCGTCCCCA\n", "\n", "idx 8 locidx 420\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 16 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 16 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[16 0 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 16 0 0]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 16 0 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 16 0]\n", "TACGTATACGGCATAGAAGATCGTGGGCTCATGGTGGTGTAAATAAAACGGCCTCGCTCGCTGGCGAAACATAGTTGGAGTCTACC\n", "\n", "idx 8 locidx 421\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[16 0 0 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TACACACACTACGCTCGGCCTAACAGGATCTGCGTAACCCAATAACACGCTGGCCGTAAACGCGGCCCTGAAGTACGCACCTCTAC\n", "\n", "idx 8 locidx 422\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 21 0]\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 21 0]\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 21]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 21 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[21 0 0 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 21 0 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TTGTGTGTAGATCAGACCCCCCCACAAAGACTTCAAATCTGGCTTAGGACTAAGAAGACAACACAACCAAGTTAATCACTCATCCT\n", "\n", "idx 8 locidx 423\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 16 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[16 0 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 16]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 16 0 0]\n", "TCACACTAGTAACCAGATATAGTGAACCGTGGTTCTCTAGTCGAGCCGTAGCACGGCGAGAAAGGCCTCAGGGTCCAGGCCTTGGA\n", "\n", "idx 8 locidx 424\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[14 0 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 14]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[14 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 14 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 14]\n", "AAAGACCCTTTACCATTACCACCGCCACGCCACACCCCTGCCACTCTTTTTTGCAGGCATTGATATACTTAAAATTACATCATGGA\n", "\n", "idx 8 locidx 425\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 18 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 18 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 18]\n", "59 W\n", "64 (59, 5, 5, 0)\n", "[0 9 9 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 18 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[18 0 0 0]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[18 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[18 0 0 0]\n", "TAAGAAGCAAGTACATAACGATTGTTGACATGCCGATCCGGCTCCTAGTAGAGTGGGCTWTGCTGCTCCACCCACGCTATGAGCAT\n", "\n", "idx 8 locidx 426\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 21]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 21 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 21 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[21 0 0 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CCCCGCACGCTCTCTCTGGTACATCCGCAAAATCATGCGAGGGGCCTAGATGGGTCTAAAACCGTTTAATAGCATGCAGGCGATGT\n", "\n", "idx 8 locidx 427\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 21]\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 21 0]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 21 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 21 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[21 0 0 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AAACGTAGCATGTAGACAACTCTTAGTTTGCCTTCTGTTTTCACATCCATGTACGACCGGAAAGCCTTCTAGCACGAGAAGTCAGT\n", "\n", "idx 8 locidx 428\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 20 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 20 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 20]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[20 0 0 0]\n", "GCCAACCACTCCCTGAACTGTAAGTAGCGGACGGTCTTCGTTATATTTGCTGACACCACACGTTGTCAGGTTGGTCTTCTTCTCTC\n", "\n", "idx 8 locidx 429\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 20 0]\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[20 0 0 0]\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 20 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 20 0 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[20 0 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 20]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[20 0 0 0]\n", "AGATTTCGGGTTCCTGTCGGCTTGCACGCCCGAAATAGGGTACTAGAGTGCAACCGACCTCCCTAACGCATGAATCTACCTCGGCT\n", "\n", "idx 8 locidx 430\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 19 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 19]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 19 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 19 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[19 0 0 0]\n", "ACTGAATCCACAGCCTGTGTCGCCATAGAATTTCTGGTTTGACAGCTAGAGGAGTACGTCGTATTTCAGCCCGACACATGGCTCCC\n", "\n", "idx 8 locidx 431\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[19 0 0 0]\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[19 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[19 0 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[19 0 0 0]\n", "ACACATAAAGGTGATGAACTCCACGCCGGGGTGGGGTCAGTTGAGAGCTTGATTTTCACTTCGCATACCTCTTTCCACTACCGAGC\n", "\n", "idx 8 locidx 432\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 22]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 22 0 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 22]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 22]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 22 0 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[22 0 0 0]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 22 0 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[22 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CGGCTACGCTGAGTAAATACGTGGAGGAGGTCAGTGCTAATTATAGTTCGGCAGGTTAATAACCAAGTGCAACCGTTATCAGGGTC\n", "\n", "idx 8 locidx 433\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[16 0 0 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 16 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 16 0 0]\n", "CCGAGACAGTAAGGCTGAAAGAACTCCGGGTCAGGGTCGCTATTGATACGCTGTCCAACCCCTAAGTACTTT-GCACAATACTAGC\n", "\n", "idx 8 locidx 434\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[24 0 0 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 24 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 24]\n", "ATGTAGTGTTTACAATCGGAAGCACTTCGCTTCAGGCTCTCTATCGGTGCGTGCCGAGTCCCTAAGTGTTAGGCTGGAAAGCATCT\n", "\n", "idx 8 locidx 435\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 20 0 0]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[20 0 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 20]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 20 0 0]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 20 0 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[20 0 0 0]\n", "CCCATCTCTAGATCGCAATCTCACATTCGTGGTGTGGAATGTGTCTACTACCTTGAATGTTAGGTCACTGGAAGACTTCGGGCAAT\n", "\n", "idx 8 locidx 436\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 19 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 19 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 19]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 19]\n", "44 Y\n", "49 (44, 5, 5, 0)\n", "[ 8 0 11 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[19 0 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 1 0 18 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CACTTCCCCCGGTAACTATTAGCAGCACATCTATCTGGTGAAACYCGTTCTTCCGGATTCTTCGTTCTGATACAGTGCACATCCAA\n", "\n", "idx 8 locidx 437\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 22]\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 22 0]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[22 0 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[22 0 0 0]\n", "AGTAGATCGCGCCTGAGTCGCCCTTAATCCTGATACGTTTCTACGGATGGGACCGAATCGGATCGGTGCGCCAATGGAGGTTAAAC\n", "\n", "idx 8 locidx 438\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 20 0]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[20 0 0 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 20]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[20 0 0 0]\n", "GCGTCCTGCCCATTTTGCAGATATTGAATATGAGTAGTTACCGTGGACTCGGTGTGAACCTAGTAACTGTCAAACGCGGCCCCTAG\n", "\n", "idx 8 locidx 439\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 16 0]\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 16 0 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[16 0 0 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 16 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[16 0 0 0]\n", "TAGCCCTGCTCAAACAGACTGGCTCGCAGCATAATGCACCCAAATGGAGAATCGTTGGACACCCCGCACCAAGTACATTCCGCTTA\n", "\n", "idx 8 locidx 440\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 15]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 15]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 15 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 15]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 15 0 0]\n", "GCGGTGGTCCGGATAATCGTATATAGATCTACACTCCCTGGCGACAGGGCCTAGATGTGCGGTGACGCTTCTCATTTATTGACCAT\n", "\n", "idx 8 locidx 441\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[17 0 0 0]\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 17]\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 17]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 17 0]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 17 0 0]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 17 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 17 0]\n", "TCGTTATCGTCGGTCTATTACGAGTACCGTCCATTGAAGCAGCGTTGCGGTCTGTTGACATGAGAGCGCCTATCTGTAATACTAAA\n", "\n", "idx 8 locidx 442\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[21 0 0 0]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 21 0]\n", "29 W\n", "34 (29, 5, 5, 0)\n", "[ 0 9 12 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 21]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 21 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AACTTTTCCCTAGCTGATATTACTACATTWTATCCATTTCTCACACTCGCGCTCTGAAAGTCAGTATAAAGCCGAGCGTACGTACT\n", "\n", "idx 8 locidx 443\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 22 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TTCGCATTCCATTGTGGTCCTAGTTTAATACTCGTACTCATACGTCGGTTACGATAACTGCCACCCGATAACTAGGACTGAAGCTA\n", "\n", "idx 8 locidx 444\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 22 0 0]\n", "78 K\n", "83 (78, 5, 5, 0)\n", "[ 0 0 9 13]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TGTTAATCACTGGCAGTAGGCGGGCAAAACGCGTGTAATTTCGCTTGCGCAGATGGGTGAATTGAAAACGCGACCATCKGTACCCA\n", "\n", "idx 8 locidx 445\n", "15 W\n", "20 (15, 5, 5, 0)\n", "[ 0 10 8 0]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 18 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 18]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 18 0 0]\n", "ATCATAATACTCCCGWGGCGAGACGGGTTCATTACTACGTGAGACCGTTCGTTTTGGAAAACACAGGATCTCATTGACCTAGTACG\n", "\n", "idx 8 locidx 446\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 19 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[19 0 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[19 0 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 19 0 0]\n", "ACGGTTATCGATAAGTGCCGACTCCTAGCTGCAATCCTTTGGATATACACTGCACCCGTTTTATACCCAGGTCCTCCTGCCGAGGA\n", "\n", "idx 8 locidx 447\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 21 0 0]\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 21 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[21 0 0 0]\n", "AGAGAATGCGTCGATAATGGATCACACAGGGCTATAGATGTGAGCCTACTATAACAGAGTTTGGCGCGGAGCGGCAAGCTAGCACT\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 8 locidx 448\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[20 0 0 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[20 0 0 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[20 0 0 0]\n", "CAATGTCCGCGAGGACCCCCCCTAAACGACTCCAAGTTGTGAGCCCCAACCTCCTTCTTGCACGATAGAGTTCGCATGTCTCCTAG\n", "\n", "idx 8 locidx 449\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 16 0]\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 16 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 16 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 16]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 16]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 16]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 16 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 16 0 0]\n", "AACGCCATTTTTGATGGGACAACACTGGCGGGCGTTGATTGGATTCTCGTTTAACGTGAAGGGAAGTGAGGGGACGAGTCAAAGGA\n", "\n", "idx 9 locidx 450\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 20]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GAAACTGTGTCCGTCGAGAGGTTGATCGTTCTTCGAAGTTATTTTAAATCAGGCGCCATAGCCTAATCCAAGGCGGTGATGCAGAT\n", "\n", "idx 9 locidx 451\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 24 0 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[23 1 0 0]\n", "GGACCAGCTAACGGAACAATGGTAGGTTGCTAAGATGAGGGTCAGCCCTACAAAAGAATCTTAATTAGTCCGCAGCATCCCTAAAT\n", "\n", "idx 9 locidx 452\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 23 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[23 0 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[23 0 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[23 0 0 0]\n", "TCAACTATGCGTGCACCCGTCACCGTGTGCACCTCGGGTGGTCTCTGAGACAGTATAGCAATTCCGGACACAAGGCCGCCATCAAC\n", "\n", "idx 9 locidx 453\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 22]\n", "24 R\n", "29 (24, 5, 5, 0)\n", "[ 0 6 0 16]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 1 21 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 22 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[22 0 0 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 22 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 22 0]\n", "ATGGCGGGTCAGCTAACGGACCGARGGCCGCCTTATTACCGTACTGCTGGGGTACCCTGATGAAGAATCGTATCGCTTCCTTCCTC\n", "\n", "idx 9 locidx 454\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[19 0 0 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[19 0 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 19 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[19 0 0 0]\n", "GAGCGACATGACCCGACTACTTCGGTAGTTGTCCTTTCATTTAGCTGACCTTGGATGATTCCCTATATAAAACATAGTTCGAAGAG\n", "\n", "idx 9 locidx 455\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[20 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 20 0 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 20 0 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[20 0 0 0]\n", "TCGAGACACCGTTATCTATCAATATTGTCCTAAGGTGGAAACGACTCTTTCTAGTGGACCGTCTACGCACGCCATGCCTGAAATAT\n", "\n", "idx 9 locidx 456\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[22 0 0 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GGAATGGCGGCGTTATACCAACGGTCGCTTATAATACATGCAAGTGGAAGAGACATCTGTGAGTGACGCACAGAGAGAGACGCATT\n", "\n", "idx 9 locidx 457\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[19 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CCCGAACTACGAGTCCTAGACCCTCAACAGACGCCGGGTGCAGGTTGGGTATCCCTGGTTGACGCGAGCCAAGGTGCGCCCATGAT\n", "\n", "idx 9 locidx 458\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 22 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 22 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 22 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 22]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 22 0 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 22]\n", "ATTAGCCTTCCTCCTGAGGACATTATTCACGCAATTCTGAGTCCAAGGCGAATCTTAGCACTAAGCGAAGCGGAAGCTGTATCTAT\n", "\n", "idx 9 locidx 459\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 18 0 0]\n", "ACTGACATCCAAAATAGATATGCCCCAAGATCTCTTGTACCGCCGTGCATTTAATCCAGTTTCCACCTTTGAACACTTATACGACA\n", "\n", "idx 9 locidx 460\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[22 0 0 0]\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 22 0]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 22 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 22 0]\n", "ACGTGATGGCTATCCATAGAGCGCCTTATTTGCGGGTACGTACACCCATCATGTGCCCCGAAGACTGGGTGATTTCGCCCGAGCGT\n", "\n", "idx 9 locidx 461\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[22 0 0 0]\n", "TCGCCCCCAAACCTACTCACATAGGCTTCAGGTTGACCCATTTTATAGTGGACGGCCGAAGCGGGCGGTGATTCACGGATCGGAAT\n", "\n", "idx 9 locidx 462\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 18]\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[18 0 0 0]\n", "13 T\n", "18 (13, 5, 5, 0)\n", "[ 0 0 18 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[18 0 0 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 18]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 18 0]\n", "GATGGTGCGCTGCTGTTATGATAACCTGAGTCGTTGACCCGCCTAAAAGGCAAGGGCGTTGGCCGGCTTTTCATTATTAGTCCAGC\n", "\n", "idx 9 locidx 463\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 23]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 23]\n", "GTTCGACGCCATATCTTGGGCTATTTACTACCAGTTTTGAGGTGAACTTGTCCAGATCGTGGAGTGACTAACAACCACGTTTGCGT\n", "\n", "idx 9 locidx 464\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 23]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CTGTAGAACGGTGCCTCTTGAAAGAGGCGAGCGGACGAAATATGCTTCTAGAAACAATGTTTAATACTCCACGACCTGACGGGGCG\n", "\n", "idx 9 locidx 465\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 15 0]\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 15 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[15 0 0 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[15 0 0 0]\n", "GCTATTACGGGCCGGATCACCCCGGGTACTGTGACGAGCTTTGGTTATCACCGGCCTTCCTGGGGTGTCCAGCAACACACGTATAG\n", "\n", "idx 9 locidx 466\n", "38 G\n", "43 (38, 5, 5, 0)\n", "[ 0 0 0 21]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[21 0 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[21 0 0 0]\n", "TGTGGTTAGGCGTCAGGCGAAAGGCCGAGCACGAGTGCGTTGAGCATGAGCCAAAATCATGTGCGGACGCCTGCCGGGTAATCGAA\n", "\n", "idx 9 locidx 467\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 24 0 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 24]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 24]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 24 0 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CAATGCTTCATTCTTCGTCGAGGCGGACAGTAGATGGTCACACCTGAGCCTGGTCTAGCGCTTTTAGGCCTCGATACGTTTCTTAC\n", "\n", "idx 9 locidx 468\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[18 0 0 0]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 18 0 0]\n", "TTTGCTCCAAGCAATCAGGTGGAAATCCCAGTGATCGAGTAGGGATGCGACGGTAGGGAAAGTCTGAAGTTATAGTCACTCTCAAA\n", "\n", "idx 9 locidx 469\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 17]\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 17 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 17 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 17 0 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 17]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 17 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 17 0 0]\n", "TCGGACGTTTGATAATGGACGATCCCTTACCAGTCTACAATTCCTGGTCGCCAGTACACGCCTCAGATTATTTTGGCTCCCGCATA\n", "\n", "idx 9 locidx 470\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[19 0 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[19 0 0 0]\n", "GCAAAGCACGGATCACCCCCGCCCATCTCCCAGGCTTAATTCCCACATCTACTGTGTTTAAGGTAGCACTTCCATGTTGAAATATC\n", "\n", "idx 9 locidx 471\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 15 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[15 0 0 0]\n", "ATCAGTTATTCCTCCATTTCATCAAATTTAAAGCAGGGGACTCGTACTATCATTGCACTCCGCGGGACAGTAGTAGATAGGGCCGC-\n", "\n", "idx 9 locidx 472\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 15]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 15 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[15 0 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[15 0 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[15 0 0 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[15 0 0 0]\n", "58 S\n", "63 (58, 5, 5, 0)\n", "[8 0 0 7]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 15 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[15 0 0 0]\n", "AAGAACAATTACACCCATTATACGCCTTTATAAGCATCGTAAATTCTCAATCGGGCGCSACAAGTCACCAATCAGCGACCACTGGG\n", "\n", "idx 9 locidx 473\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 19 0 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 19 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 19 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TGAACCTTTGACGTCCCTGTTGATCCCTAATTAGCTGGCTATGCCTGCTGCTTCAACATAACATGTGTGAATTTAGGTTTTGGTCG\n", "\n", "idx 9 locidx 474\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 20 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[20 0 0 0]\n", "CGCGGTTCTCGAACACTGGAACGCGTCTCTAGTTTGGGTAGTTCTGAATGCGTAGGAAGGCTAGAACAGCGGCATGTTCATGTGCT\n", "\n", "idx 9 locidx 475\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[25 0 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[25 0 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 25 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 25]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 25]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 25 0 0]\n", "GCGACTCAACTACGTTGAACAATTGAGCTCAATCGTAGTCACCTGTAGGCTGCTCCCGCAATCAGATGACATGGTTTCGGCGCGCC\n", "\n", "idx 9 locidx 476\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 25 0 0]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 25]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 25 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 25 0]\n", "TTGATACCATACAGGACTACCGATCTCGTCAATCAGTGCATTATCGCGAATATGTGAAACAGGACACAATCTTCTATCACACAAGT\n", "\n", "idx 9 locidx 477\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[20 0 0 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 20 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 20]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CAAGTTCCATGGGATCTCCGGGTTAAACTCTAAGCATGCATTCATTTGCACGCGCAAACGCGTCGCGTATCATTGGAATAGTGTGT\n", "\n", "idx 9 locidx 478\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 15 0 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 15 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 15 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 15]\n", "CTATCGGCCCAGCTTATCGAAACGAAGTTTATGTTATCAACGGCTTACTGGTGACCACCACAAAGCTTCCGGGGGGTATGCGACAT\n", "\n", "idx 9 locidx 479\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 20]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 20 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 20 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 20]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AAGCTATGTCGTCTTAGCCGATTTTCGCTCGGTTTCAGCATAAAATACTGATCTGACCATTAGACGCAACCCGCTCTCTCCAGATG\n", "\n", "idx 9 locidx 480\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 15 0 0]\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 15 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[15 0 0 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 15 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 15]\n", "GATTATAGACTGGATGTTCCCGTGCGAGCAATTATAAGCCGGCCTATGGAGCTCGCAAGTCTATGTGTGGAATATCTGCTCAACAC\n", "\n", "idx 9 locidx 481\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 19 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 19 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TGTAACGTTCCCAGTACTTATGCCCCAAAGCTGAGCCTTTGTGTTGCCCGGCGCACCGCATAGCGAAGGACGTCAACCAATCATAC\n", "\n", "idx 9 locidx 482\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[20 0 0 0]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 20 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 1 19 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[20 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 20 0 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 20 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[20 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 20]\n", "CTCCTCTTGCGTAGTTTGATCGGGCGTCCAGGGGTGATACTACGACGTAGTCCTCATTGACTACATTACCCAAAGGAGAGGATCCG\n", "\n", "idx 9 locidx 483\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[17 0 0 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[17 0 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[17 0 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 17]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 17 0 0]\n", "GCAGTGAACACTAGACCCTTTCTGGACCGGTCGTTCAGGGACTCAGTTGTCGCTCCGCCATTCCCCTTGTCACATGCAAACATTCG\n", "\n", "idx 9 locidx 484\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 25 0]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 25]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 25 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[25 0 0 0]\n", "61 Y\n", "66 (61, 5, 5, 0)\n", "[14 0 11 0]\n", "AGGCGAGCTCTACTTCCATCATAGAAGGTAGATATTAATCTTCTGTCCTATCTGTGGACCTYTAGCATGCTAACGCAATTTTCCAG\n", "\n", "idx 9 locidx 485\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 17 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 17 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 17]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[17 0 0 0]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[17 0 0 0]\n", "81 R\n", "86 (81, 5, 5, 0)\n", "[0 8 0 9]\n", "ATACTTCGCCCGGTTCTCCATACCCCATTCTTTGCTGCTTCTTCTGAGCGCACTCGACCTATGCCTAGTCGCACCTCGCATRTTTG\n", "\n", "idx 9 locidx 486\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 18 0]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[18 0 0 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 18]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 18]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 18]\n", "TCGGGTGGTTTCAGGGTTCAGCGCCAGACACCCCTCAATCTTATTGCGCGGTCGCGAGAGACTCGTGGACCCGTCGCGAAATAGCT\n", "\n", "idx 9 locidx 487\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 19]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 19]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 19 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[19 0 0 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 19 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 19 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[19 0 0 0]\n", "AGCGCAAGTTCGGGGAGTTAACATCTTATGAATTTGCGACCAATTACATTAGTAAACCCCCGGCGTCGTCAGTAGTCAATTTCTCC\n", "\n", "idx 9 locidx 488\n", "23 Y\n", "27 (23, 5, 5, 1)\n", "[14 0 7 0]\n", "32 G\n", "36 (32, 5, 5, 1)\n", "[ 0 0 0 21]\n", "39 T\n", "42 (39, 5, 5, 2)\n", "[ 0 0 21 0]\n", "62 C\n", "65 (62, 5, 5, 2)\n", "[21 0 0 0]\n", "TTACACATTACACCTCTGCGG-CYTGTTCGATGCATGA-TTGATGCCTGCAGCTTCCATGCCCCGGTTGTTTCTTTATCCTGACACTG\n", "\n", "idx 9 locidx 489\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 20 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[20 0 0 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 20]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[20 0 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 20 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 20]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TAAATCATGTCGTGGTGTGGTGTAGTACGGTCGGCGCATGAAACCGTGTCACAATACTGTCACCATATCACACGATACTGTGATGC\n", "\n", "idx 9 locidx 490\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[16 0 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 16]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[16 0 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[16 0 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 16]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[16 0 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 16 0 0]\n", "GATTCTCTACGAAAGTGGGTCTTTATCGTTCGTTACGGGCCTTCGGCGTTTGTTGGGGAGTGAGACGCGAGTCCCACATTATCTCG\n", "\n", "idx 9 locidx 491\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 21 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 21 0 0]\n", "65 R\n", "70 (65, 5, 5, 0)\n", "[ 0 9 0 12]\n", "TAACTGTGAGTATCAGACGCTCGGTCGCTCAAGTACTGAGAAAGTGGACCGTCCCCTAGACTAACRAAGTTATCCCGATGAGCCAT\n", "\n", "idx 9 locidx 492\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[21 0 0 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 21 0 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 1 20 0 0]\n", "TTAACTCAAGCCAAGGGTATGCGCGCGGGCTCTCCTAATCCCGATGACGAGGCGGGGAAGACCATGCTGCTCGTTAAATGATGACT\n", "\n", "idx 9 locidx 493\n", "44 S\n", "49 (44, 5, 5, 0)\n", "[ 8 0 0 10]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 18 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 18]\n", "AGATAATCAATCGCCCGTCGCCAGATACATCGTATGGAGTTATTSGTTATAGAAGTTTGTATGTCGCAACTGACACCGAACTTAAC\n", "\n", "idx 9 locidx 494\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[21 0 0 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 21]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[21 0 0 0]\n", "82 W\n", "87 (82, 5, 5, 0)\n", "[ 0 12 9 0]\n", "AATTGACAATAATTACCTCTGATATCCAAGACTAGCTTATTAGTTATGGGTTATGACTAATGGCTCTATTGCCGCGCGTGAAWCTC\n", "\n", "idx 9 locidx 495\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 18]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 18 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 18 0 0]\n", "ATTGCTCAGAGCAAACTCACGTGTTGGTAGCTCCGAGGTTTATCCATGGATTGGTATAGTGAATTGGATTTGTCCATTTGTCACCT\n", "\n", "idx 9 locidx 496\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 19 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[19 0 0 0]\n", "CATAATTCCGAGTAGACATTAACCATATTTCATAAGCTTAGTACATTACACGATCCCCACAGCTACATGAGGGCTCCAGGGCTTCT\n", "\n", "idx 9 locidx 497\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 20]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 20 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[20 0 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 20]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 20 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 20 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AATACAACAGCTTCTTGAGCTCCCGATGACTGAACTGGGAAGACCGCACAAGCAAACGTGTTGTTAGTGACGCCTACTCTCCATGT\n", "\n", "idx 9 locidx 498\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 19 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TGAAAACAAGTACACGTTCCCCTCCCCTCCGACAAAGGAGCTTGCCGCAGATGACGTCTTGTTTTGGGCCACCAGATTATTTTAGG\n", "\n", "idx 9 locidx 499\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[17 0 0 0]\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 17 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TGCTCCCGATATGCATGAACACTTGGAGGGAGGACTTCTCCGTGAGTTCAAGGCTCAGTCGGCAAGACGTCAATGAATATGCGGTC\n", "\n", "idx 10 locidx 500\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[22 0 0 0]\n", "9 K\n", "14 (9, 5, 5, 0)\n", "[ 0 0 11 11]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 22 0]\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 22 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 22 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[22 0 0 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 22 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CGCGACTATKAATCAAGTGTTTCGCAGGGGCCAGCACTTCGATCCCACCTCACGTTACGGCTGACGTCGTGTGAAGTAGCAACTTC\n", "\n", "idx 10 locidx 501\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 18]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 18 0 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 18]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[18 0 0 0]\n", "GTAAGACCCCAATATAGCCCTATATTACTACAGGATACTTGTTATGTAGTCGTGCCCAATTTAAAACTTCCCGTACCATCCGACCT\n", "\n", "idx 10 locidx 502\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 20 0]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 20]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[20 0 0 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 20]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TCTACTTCGAACAGGTACAGCCTGTGCACGAGCTTTAGTATGATATCGGGGCCCCCCACAATTGATAACAGCCAGGTCAACCCCGC\n", "\n", "idx 10 locidx 503\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 16]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 16]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 16]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 16 0 0]\n", "TAGACGAATTTCAGCATCGGTCACACAGACCGCTAGGGCGCCCGCTCATGTGTTTTGGCAGCCCGGCTGCTCGCATGCACCGCGAA\n", "\n", "idx 10 locidx 504\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 21 0]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 21 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 21 0]\n", "ATGATGTGTCCCCTAGCCGCGGAGATTAACAACCTTCTATCTTTCGCCGGCCGTAGTACATCCCTGCTTAGTCTAGATCCAGATTA\n", "\n", "idx 10 locidx 505\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 20]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 20 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 20]\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 20 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 20]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 20]\n", "ATAACGAAGGTCTTACTGATCAAATTTAGTAGTGACAGGCAGTATCACCCTCAGGGAAGACAACCCCGGCGTCTCGCCAACATGTT\n", "\n", "idx 10 locidx 506\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[19 0 0 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[19 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CGGTCTATCGAGATACAGAGCTGTGCGTTAAATTGTAAGCAGTCTGCTTGGATGCCAAACCTGTTCCACACCACGCATCGTAGTGG\n", "\n", "idx 10 locidx 507\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 18 0 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[18 0 0 0]\n", "TCGGAGCCGGAGCTCTGTATTTATGACTACAGAGCTCCTAGTATAAAGCTCCGACTGTGGGTATTCTCGTTCGCGTAACCTGCAAG\n", "\n", "idx 10 locidx 508\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[22 0 0 0]\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 22 0 0]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 22 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[22 0 0 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 22 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 22 0]\n", "62 M\n", "67 (62, 5, 5, 0)\n", "[11 11 0 0]\n", "CAAATTTGCCAATACTAAGGAGTAGGAATGAGCTGGGGTTGCAAGTCTAAATAGAATCCTGTMTGCTGACCGCGTGGTTATGTCTC\n", "\n", "idx 10 locidx 509\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[22 0 0 0]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 22]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 22 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 22 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[22 0 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CCATTCCCGCACTGCTCATGACTGGTCATAGAGATCCGAGAGCCGTCAGGGTCAGTACTCTGGTAATGCTCGCTGAGTCTGCTGGC\n", "\n", "idx 10 locidx 510\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 20 0]\n", "20 R\n", "25 (20, 5, 5, 0)\n", "[ 0 9 0 11]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 1 19]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[20 0 0 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 20 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GCCCAGCCGCCCTGAGCACCRTCCACCTAGTCAGCTAGCTGTACTAACCTGCCTAGAGACGAATTTTGAGGAAATAAGGCGCTTTC\n", "\n", "idx 10 locidx 511\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[19 0 0 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 19 0 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 19 0 0]\n", "58 R\n", "63 (58, 5, 5, 0)\n", "[ 0 10 0 9]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GTTTCTGCAGTTGGCGCTGACGCCGGGTCGATCCCGAATATAGGAGTAGACCCCCGTARGACGCAAAGCCATGCGTGCAAGGTTCA\n", "\n", "idx 10 locidx 512\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 18]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 18 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CTACTTGTAGTCTTTCCACCAGACGTTATATCCGCTGTTACCTGAGACGTAGCTGGACGATGATATAACGTAGACGGTCGATATTT\n", "\n", "idx 10 locidx 513\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[19 0 0 0]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 19 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GAGCGAAGCAAGGGGATAGTACTTGTACTCGCTAAGAGAGTCCCGCAATAAAATCCCATCTCCTGGTATTCTGTAACGTACCATCG\n", "\n", "idx 10 locidx 514\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[18 0 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 18]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 18 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[18 0 0 0]\n", "ACCTCCACACATCGTGGGACTTCCCAAGACTATCGAAAGTTGCCTGCGGCAACGAACTGTGAGATCCGCTGAGTCAGTAAGGAAGA\n", "\n", "idx 10 locidx 515\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[20 0 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 20 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GAGTTTTTAATCGAGTATGTAGCGCGGAAGCAATCCCGCCTAAACTGGGCTATACAATGCGGGATTTTTACGATGATACGCTCAAC\n", "\n", "idx 10 locidx 516\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 24]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 24 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[24 0 0 0]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CTAAGCGGGACAGCACGGCCTACGCCAGTTCAGCGTAACTGAACACACTCTTTGCTAGCCATCGTCGCTTAGAGCGTTTGCACGTA\n", "\n", "idx 10 locidx 517\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 19]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 19 0 0]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 19 0]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 19 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 19 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TGTTGGTTTAATGTTACACGCAGTAGAATATGGTAAGAGCGTGCCTGATCAACAGCATGAAGGCGGAGATTTTTCTACATTATTTA\n", "\n", "idx 10 locidx 518\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 20 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 20]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CATAGAAGAGTTAGCGACGGATTGTAACGTTACAGCAGTTAGAAACCTCGTACGTTCCGAGTCCCCCCTAATACGAGCTATCCCGG\n", "\n", "idx 10 locidx 519\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 21 0]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 21 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 21]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GCAGAACAGCTGGCCTACCAGGACTTCCGCTTAACCTAATCGCCCCCATCGGGTCTACTCACGCAACCCCAATGAAACGATCCCTA\n", "\n", "idx 10 locidx 520\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 21 0 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[21 0 0 0]\n", "CAGGCTAAAAATAGTGACTAATGCGGGTCGAAGGGGCCACGACCTCTAGTCTACAACCGAGCAACGATCAGAGAGCTACTTCGATC\n", "\n", "idx 10 locidx 521\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[20 0 0 0]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GGATATACGGCGTTAATTAATCAGAATTCATGTGGCGACAGACTTGCTATGGCTGCGCAAGACACAACGTTTATCGGGGACTGCAG\n", "\n", "idx 10 locidx 522\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 17 0]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 17 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 17 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 17]\n", "CGCCTAGACTTGCGGCAATCTGGCCGGTGCCCTACACTCAAAATACGTCCCTCCCATTGTTGTCCCGATAGTCCGGGTCTTTCGAG\n", "\n", "idx 10 locidx 523\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 16]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 16 0 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 16]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 16]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 16 0]\n", "TTAGGCCGAACTATGCTACGTTTCTGGGTGGGCTCTAAAAAAGGTCTTACCGATGTACGTTGCTTCCGCACCGCTGCAGACTCGCT\n", "\n", "idx 10 locidx 524\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 14 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 14 0 0]\n", "GGGGAGCGCCCTTTTCTCTGACTAGGTCTGCCAAAATCTGTTAATAATCGATCGATCTACCCATACGTAGAGGGATGGGTGGTTAA\n", "\n", "idx 10 locidx 525\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 19 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 19 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TCTATTCTAGTGCATCAAACAGAGTTCGGGACAGTGAGCGAGCATCTATCTGCCCGGATCGCGAGGTACGACAATCTCATTTCCTG\n", "\n", "idx 10 locidx 526\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[11 0 0 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[11 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 11 0 0]\n", "CGCGATTCCACAAATCTCCGTATATTTAGAACTCAGCTAAATAGTAACTTCCCCCGTAGTACCTTGAAATAACGTGACGCTGATGG\n", "\n", "idx 10 locidx 527\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[19 0 0 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 19 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[19 0 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 19 0 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CGAGCGCTGCTAGTCGGGAACTCCTCTTCCGTGTGCACTAGCTTGTTGTCTCTCCATCAGAGATTGTTCCTGCTACCCGCATTAAG\n", "\n", "idx 10 locidx 528\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 18 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[18 0 0 0]\n", "CTACACTCGGATAAAGCCGCGCTCCCGGCAATTGGTGGGTGGAACAACATAACCTTCTCTCGGTATTGATTTGCCCCGATTATCCC\n", "\n", "idx 10 locidx 529\n", "2 Y\n", "7 (2, 5, 5, 0)\n", "[10 1 9 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 20]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AGYCCTAGGTTAAGACTCACCTCGGATGCACGGACGATAGATTTCTAATGCCGAACTAGATGGTATGGACCTAACAACACGGTTAG\n", "\n", "idx 10 locidx 530\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[20 0 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 20]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 20 0]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[20 0 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CATGAGTAACCCCCCCCTCTCCGGCTAGCCTGCGATATAGCATGACATTTACAGAATGGTGGCGGTATTTGCCACGGAGAGTGCTA\n", "\n", "idx 10 locidx 531\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 17 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 17 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 17 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 17]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 17 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 17 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CGCCGGTCAGGGTCTTTCGTTGAAACCGTCAGGCATGAAATCCCCCTACAGAGGTCCGCTTTTCTGACTGCTAAGTTCTGAGTAGG\n", "\n", "idx 10 locidx 532\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[16 0 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 16]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 16]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 16 0 0]\n", "40 T\n", "45 (40, 5, 5, 0)\n", "[ 0 0 16 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[16 0 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 16 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 16]\n", "CGGTTACACAACAACAAAATAGATCGGTAAGTAATCTATATCGCAAACCCAAAGGGCAACTCTGCGGCATACCTAGGCTCATGGGT\n", "\n", "idx 10 locidx 533\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[19 0 0 0]\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 19]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 19]\n", "37 W\n", "42 (37, 5, 5, 0)\n", "[ 0 9 10 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 19]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[19 0 0 0]\n", "56 Y\n", "61 (56, 5, 5, 0)\n", "[ 9 0 10 0]\n", "81 W\n", "86 (81, 5, 5, 0)\n", "[ 0 9 10 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 19 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GCATGTGAGCGAGGGAATCCTTAAGTGTCTCGGGGCCWGAATTTATGGGCACGCCAYTGCTGTGCATTAGTAAACCGGCTGWGAAG\n", "\n", "idx 10 locidx 534\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TGAACCTGCTGGCAAACCAGTCCGTACCGTCACCAAAGTCACGTAAAGGTAGATCTATAATACCTGCCCTTAATACGTGAGCGGTG\n", "\n", "idx 10 locidx 535\n", "1 S\n", "6 (1, 5, 5, 0)\n", "[ 7 0 0 10]\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[17 0 0 0]\n", "7 Y\n", "12 (7, 5, 5, 0)\n", "[ 7 0 10 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[17 0 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[17 0 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[17 0 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 17 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 17 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[17 0 0 0]\n", "CSTCCATYAAACAATAGTTACAGTCATTATAGAGCCTTGGGGCCCTCGCTCGCACCGACGACAAACCTGTCCTCGCACCCGGAGCG\n", "\n", "idx 10 locidx 536\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 25]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[25 0 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 25 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 25]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 25 0]\n", "ACGAGACCGACCGAGGTTGACTATCTAACTGGGGTGCGTATTGACGGCCTAGCAGTACCCACATCGCCCAATGCCTGGCTATCCTA\n", "\n", "idx 10 locidx 537\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[20 0 0 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[20 0 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[20 0 0 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 20 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GACCAGGAGGGTTAGTTTCCTCTCGCTTTAAGGCGCCACGTCGAGCAAATCGCGAATACCGGACGCTTCGTCCTATGCGACCCTCG\n", "\n", "idx 10 locidx 538\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[20 0 0 0]\n", "TATAGATGCGGTGGCCGCTATCGAAACTGGCAGCTAGTTTAGATCCCCCCGCAACTA-CTTCGGTAACACCTAGTTCAAAAAGCTTT\n", "\n", "idx 10 locidx 539\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 17]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 17]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 17 0]\n", "AGAAACATTTATAAACAAATGACAGCTCTATACTGTAGTTACATCAGTAGGCGACAGGGGAGTCTAATTGTGCTTGGGGCCTGACT\n", "\n", "idx 10 locidx 540\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 21 0 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 21]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 21 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[21 0 0 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "TTAAGCACAGCAACACAGTCGTTAGCTCGTTAATGTCCTCATGTTGTAGGCGGTTAATTTCCATTTGCTTGAGAAAGCCGTGACCC\n", "\n", "idx 10 locidx 541\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 23 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 23 0]\n", "GTGACAGACGCGGCCTCCTGCGTCAACGGCCGATTGTTCAGTGTCCAGCGGCTACTTCATATTAGAATGACAAGGAATGTTATTTT\n", "\n", "idx 10 locidx 542\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[21 0 0 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 21 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 21 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 21 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 21]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TCGCTACTAGCTACCGATGAAATTCACGTGAGGCTCATGTTGGCTTTATGATAGATTCCGTATCGGTCTATCGGGGAAGTACGTGA\n", "\n", "idx 10 locidx 543\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 21]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CTGCGGTAGTTAACGAACAGCCTGTCTTGTCTAAAGGGTTAAAAATCAGGTCCGGTGTACAGGCGACGATAGAGAACCCCGGCCTA\n", "\n", "idx 10 locidx 544\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[20 0 0 0]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 20]\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 20 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 20 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 20 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CCAACTGGGCGTCGCCATGTTCCTGATGTGAGTATAAACTGAGGAAAATTCCAGTTGATCGCACGCTACAAACCAAAAGTATAGTT\n", "\n", "idx 10 locidx 545\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 17 0 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[17 0 0 0]\n", "TTCCGCTCACACGATATTAGAGGGGCCGTGCCCGCCTAAACTCCGGTAGAGTACCCTACGCTTTATCTACCCTTGGTTATTCCGAC\n", "\n", "idx 10 locidx 546\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 23 0 0]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CTACTTAAAACCAACACTTTTCTTCGGGGCACACTGCAGCATCGAAGCCGCTACACCCACGGCCGGAACTTTGAAAGGTGGCGACC\n", "\n", "idx 10 locidx 547\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 21 0 0]\n", "33 M\n", "38 (33, 5, 5, 0)\n", "[13 8 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[21 0 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 21]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 21 0 0]\n", "ACTTGACGTTGAGATGGTGGGACGTATGGTACGMACACAATCCAAAAAACGTCGAGGATTCGGTACTATGGCTTTCTAGCAGCACC\n", "\n", "idx 10 locidx 548\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[23 0 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 23 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 23]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[23 0 0 0]\n", "GTGTGGTGTATGTACGTGAGGCCATTTCTTAAGCTACAAGGTGTTAAGACGAGCGCGGAATTCAACCTTGGACTTATTGCAGCAGT\n", "\n", "idx 10 locidx 549\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[19 0 0 0]\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 19 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 19]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CGCCCCCAAATTGCAGCGTACGGGGCCATGGCCGATGCTTGAACATGATCAGCGGTATTTAAGTAAGAATTTAACGATGCCCTGGC\n", "\n", "idx 11 locidx 550\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[16 0 0 0]\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 16 0 0]\n", "38 G\n", "43 (38, 5, 5, 0)\n", "[ 0 0 0 16]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 16]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 16 0 0]\n", "TAAGGCAGTCATCTTTTTCAGCAACCCTCCGAGCCGAAGCAGTTCTCTCAATTATTGGTACTGAGCAATTGAGAGGCATCCACCCT\n", "\n", "idx 11 locidx 551\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 21]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 21 0]\n", "GGAGTTGTTTGCTAATCCTCACGCTGTTGTCCGCTTTAGTGTCTTCAACGATTCCGGCCTAATTGCCCTGACGACATGCCGTCGCC\n", "\n", "idx 11 locidx 552\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[16 0 0 0]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 16 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 16 0 0]\n", "ATTACCGAAGCTCCTGGGAGACTGAACCACCAAGAAAGCGATCCGAAAACATTGGGGCGTGGGATAAACCAATGTTTGAACCGTTG\n", "\n", "idx 11 locidx 553\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 23 0]\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 23 0 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 23 0]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 23 0 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CATTAATAACACAAGACCCCATAGTCATATCCGAAGTTAAGCAATCGTTAGGTGCTTATTGCAGAATCGCATTTTGGATCTTCTCG\n", "\n", "idx 11 locidx 554\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[19 0 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 19 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TACAGGGCTGCATGTGGAGGCTAGGGGACAGAGGTACCCGCGAATTACAGCGAATTTATCCTGAGCTTGGCCCGGGTGAGCAAGAC\n", "\n", "idx 11 locidx 555\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 18 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 18 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CTACCGGTCAGTTGCACATCCGTCTATGTAATGTAGCGAATTTCATGAATCTAATCGTCCGCCCCTACGGATTAAAGGTTTATAGT\n", "\n", "idx 11 locidx 556\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 22 0 0]\n", "69 C\n", "74 (69, 5, 5, 0)\n", "[22 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CTGAAACATACGTTAGTTCCAAACTCAGTATAATGATAGATTAAATGTTGTAATGGACCTAGGTCACGGCACACTACGGCGCTCGT\n", "\n", "idx 11 locidx 557\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 21 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 21 0 0]\n", "AGGCCTGTCAAGCAGCTGGGTACCGCATTTAGAACCGGGTGTTCCCAGCGAACGCTTAAACCTGCCGCCAGAATGACAAGTAAGTA\n", "\n", "idx 11 locidx 558\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 18]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[18 0 0 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 18 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[18 0 0 0]\n", "CAGTTCAAGGAGTAGCATATCGTAAAGTCTCTGGGTTAGGCCTTGAAGTTCCCGATGCGTAACTTACCTCTTGTATCCCAGAAGGG\n", "\n", "idx 11 locidx 559\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 23 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CAAGAGAGTTCTGTCTGGGCCGGAAGGTCCCCTGAACAGCCTGGAAGAGAAGGTACGACCTTGTAGTAATCACACAAGGGATAGTT\n", "\n", "idx 11 locidx 560\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 18]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 18 0 0]\n", "72 R\n", "77 (72, 5, 5, 0)\n", "[ 0 11 0 7]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 18 0]\n", "ACGAAATTGCAGGAGTGCTGCTGTAGTATCGTAAGCATCCGCAACCAGCAGACCGAAAGATATGCTGGACATRATTGTATTGATGG\n", "\n", "idx 11 locidx 561\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 22]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 22 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 22]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 22 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 22 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[22 0 0 0]\n", "GAGTCGGCCTAGGCAGCTATTAGAGCAACGCAATCTTGGCGACTCAATTCCCCTGGCCCCACTATGTACGATCGCACGAGCCGGAT\n", "\n", "idx 11 locidx 562\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[22 0 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[22 0 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 22 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[22 0 0 0]\n", "ATACAGCGTATCACAGTGTAGATCACGAAGGACTTCTTACTCGAGTACTCATTCCCCGATTCTAGTTGTTCGTGCGGCCGGACGGA\n", "\n", "idx 11 locidx 563\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 17 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 17 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 17 0 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 17]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 17]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 17 0]\n", "AGCCTAACGATGCCGTATCCTAGCTAAATTCGTCGTGTGATCGCGAGTGCTTCCAACGGAGTATGCCTGGGTCTTAGACAAGCTTA\n", "\n", "idx 11 locidx 564\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 19 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 19 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CTGGGATCAGGCAATAGAACGGTTCAAAAGTCGTATATTCTAAATCGCGAACGGTTCATGATATTGGGGCTTAACGTCAGTGATTG\n", "\n", "idx 11 locidx 565\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "AGTGTATTCGAGCCTAACGAATAGATGCAGGAACGTCTTCTTGTCGGTGCTCAACCGGTTCCGGCACCTCGCCACACAAGAGGAGT\n", "\n", "idx 11 locidx 566\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 19]\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 19 0 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 19]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 19 0]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 19 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 19 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 19]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 19 0]\n", "AAAGGACCTCGGAATTTAGCGTGATTGTAGGTCAACAAGTTATAGTTGTGTTTGCCACGTCGGCGGACGCGAGTATCTTCGAGACA\n", "\n", "idx 11 locidx 567\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 18 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[18 0 0 0]\n", "ATGCTGAGTTCGGCCGGTTCCCTCTCTCAAATAATAAAGTCGCAGTAGCCTGCACCCCTCATTGCAAGCTTGCCAATCGTTGCTCT\n", "\n", "idx 11 locidx 568\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 14 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[14 0 0 0]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[14 0 0 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 14]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 14]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[14 0 0 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 14]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 14 0 0]\n", "TCTGTACTCTACAATACCCCGGATACAGGTGCACATAAACAGCCTATGCTGATCTACTGGATCTGAGAGCCATAACCCAAATGACG\n", "\n", "idx 11 locidx 569\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 21]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 21]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 21]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[21 0 0 0]\n", "CGCAGAACCAGATAACGGGCAGGACACTCGAGCCACTGAATAATGTGGATGAGCCTCTCTCAACCCGCTGATTCGTGATCATACGC\n", "\n", "idx 11 locidx 570\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 20 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CTAATAGGTTTGTTGCAAACATCCTTCATTCTTCTGTAGTGTCAATCCTCACAGTAGCACCTGGGGAGCTGGCGAATACATATTTG\n", "\n", "idx 11 locidx 571\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[19 0 0 0]\n", "CTGAGGATGTCAGGGGCGGTAACTATGTTTTTCGTCGCGTAAGTGCGAATGCGCGTCAACGACCCTACGATGACGAGATAGGAGTC\n", "\n", "idx 11 locidx 572\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 21 0 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 21]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CGCCAGGCTGCTCCGTCGCTTTAGAGGGCCGCGAGCTCGTCCGAGCTCGTTACATTAGTCCTAGTGCATCAAGAAGCAACTAGCAA\n", "\n", "idx 11 locidx 573\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GGTCGGCCCCCCTTCCTTTAAACGTATGTGGACCGAGGAGGTAGCTTGAATTGCATTAGCGTAGAGAAGATTCGTGGGAAGGGTCA\n", "\n", "idx 11 locidx 574\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[21 0 0 0]\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 21 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TTATTCTGAGGCACGCGAAAGAGTATTGTGGATTATAAGGTGTTCAGTGTTTGACCACTGTGTGGCGAATAGCAACTTAATATTCG\n", "\n", "idx 11 locidx 575\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 18 0 0]\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 18 0 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 18 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[18 0 0 0]\n", "GGGATATAAGGTGTAGGTATGTTGTTCTTCTTCATTAGTTACTCTGCCCCCTAAGTAGTCAGAGGGCCTCAGGGCCCGACGTTCGG\n", "\n", "idx 11 locidx 576\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 24 0 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[24 0 0 0]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 24]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 24 0 0]\n", "ACCGCATTCATGTTCTCAGCGTCGCTTACGGAGCCTGCCGGCTTGTGTGACCATAAGTGGCTCCCTTACTCGTAAGCTTATTTAGA\n", "\n", "idx 11 locidx 577\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TGTGACCCCCACGTTAACCTACGTATTGCGCTGCTCTAGTACCGTGGCATGTGTGAAGGGTATTATGATTGATGGATTGCAAGACA\n", "\n", "idx 11 locidx 578\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GCTCGAACTTGTACCCTCATTTCGAGCCGATTTCCCCCTCAAGTAGTAGAGTCTGGAGTACGCACGAGAAAGCTCTAGTATAGGTC\n", "\n", "idx 11 locidx 579\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 16]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 16 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 16]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[16 0 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 16 0]\n", "GCGGGTTATGTACCACCCTTTGGAAACTTTCTAGGTCATGCCGTGCGGAGCTCAGATCACGTACCCGAGGCCCTGAGTCTTTCTGC\n", "\n", "idx 11 locidx 580\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 21 0 0]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[21 0 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 21 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 21 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TGCACACCACCATCCGTGTCAACCTGATCCGTTATAGGGTTTTTTGCGTAAAAGCGGTAGTGCGTCCACCCGCCGTAGGACTCTAA\n", "\n", "idx 11 locidx 581\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 19 0 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CTGACCATATAGTAATTTCCCCAAGGATAAGAGGTTATGGCACACGTCACCTTAAGACTATACAAATGCGAACAGTTAGCCTCAAT\n", "\n", "idx 11 locidx 582\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 24 0]\n", "40 C\n", "45 (40, 5, 5, 0)\n", "[24 0 0 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 24 0]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 24 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 24 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 24]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 24 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 24]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 24 0]\n", "GGCTATCGTTCAAGGTTAGCCGGTTAATGTGTTTGCTAGTCCCAATTCTTAACGGATTTTTGAAATTGTTGCGGATAGACGTTGTT\n", "\n", "idx 11 locidx 583\n", "10 C\n", "15 (10, 5, 5, 0)\n", "[18 0 0 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[18 0 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 18]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CCCGACCAGACTTGGTGCCCCTGTTTGTTAAGTACTGCGAGCGATGACCGTTCCTGGTAGCAACGATAGCGATTATGCGCACCTCA\n", "\n", "idx 11 locidx 584\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 18 0 0]\n", "72 S\n", "77 (72, 5, 5, 0)\n", "[11 0 0 7]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CGCGTCTAGAAAGCCAAATAAAACTGATTTAGTGACAAGTTCGCTATGGGCTGTCTAGCAACATATGTAACASGCACAAGTAAGTC\n", "\n", "idx 11 locidx 585\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[18 0 0 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[18 0 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CCCGACACTGTCTCATAGATCACAGCTTAATCAGCCCGGTAACATAGTCTCATGCCTTCAAGGTAAAAACTAAGATCTGTGTAAGT\n", "\n", "idx 11 locidx 586\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 24 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 24]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 24 0]\n", "TGTCCCTATGTATCGGGCTGGTCAGTCGTCATCGAAGTGCCGGGGTTGGCGTCTTTCCTCCGTAACCGACGGATACACGGTTTTTG\n", "\n", "idx 11 locidx 587\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 23 0]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 23 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 23 0 0]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 23 0]\n", "GGTCTGCGCTCATCCATCGATATCACGCCTTACTAGTTGAAAATAACGATGATAAACGGTCGTTCCCCACGGTCAGTTAAATGGAA\n", "\n", "NOT HERE\n", "idx 11 locidx 589\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 14]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 14 0]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 14 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[14 0 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[14 0 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 14 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 14]\n", "CTAGTACGTTATACGTAGCCAATGGGAACCTGGCCGTCCGTTGCACGTGACTACAATGCTATCTTCTCAAATAACGTGTGATACAG\n", "\n", "idx 11 locidx 590\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 18 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 18 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[18 0 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GCGTCTTGTGATGTTACTATTATTTTTTGTCAGATGGGCTCTGATTACACAGGTGCTCCTAGAATAGGGTTAAGATCGCATAGTGA\n", "\n", "idx 11 locidx 591\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 20 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[20 0 0 0]\n", "64 K\n", "69 (64, 5, 5, 0)\n", "[ 0 0 11 9]\n", "GCTTGCCTATTAATCAACAAACGGAGTACAGGTACCACCGAACTTGCCATTCCTAAATATGAGTKTACGAGCGGAGAGAACTCCAA\n", "\n", "idx 11 locidx 592\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 19 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 19]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[19 0 0 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[19 0 0 0]\n", "TGACAGGGCTCATCGGAGGTTTAGTTCCGTGTGCTTGGTCACGTCGATACCTCTATGCCAGCTGTAAGCTCAGGTTATCCTCTCCG\n", "\n", "idx 11 locidx 593\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[24 0 0 0]\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 24]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 24 0]\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 24 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 24 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 24 0 0]\n", "CGGACGCCAGCGTGTCGTTGCCCACTGTGCTGATGAACCACTGGACATGGTAGCTGCGAGTCGGGTATCGACGTGGGACAAACTCG\n", "\n", "idx 11 locidx 594\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 1 16 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 17]\n", "ACGATTACAGGCAGTGTTAAACGCTACTTACTGGATTACAACTGATCGCCTAAGACGTTGATCAGATGGGTCACATATTCAGGGCC\n", "\n", "idx 11 locidx 595\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 17]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 17]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[17 0 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TTATGCTTCATGAAGCAAAGTAAGTATAGCCGGACCCTTGGCCTAGGAGAACGATCAGCCACGATCGGACACTACTACGATGGACA\n", "\n", "idx 11 locidx 596\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 22]\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 22 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 22 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[22 0 0 0]\n", "GGTGGAGCTGCCTATCAATTCGGTATAGATCGGGTCGAGTAGAGAAGCACAGTAAGACCCTAATATTACAGCACGCTCTTAGCCGG\n", "\n", "idx 11 locidx 597\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 27 0 0]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[27 0 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[27 0 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 27 0]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 27]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 27]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 27 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 27]\n", "GGAGGAGAGCTTAAGTTGAGCGCAATCGTCCTCCGCACTGGTCTCGACCTCCCCCGAACTCTAGTTCTGATTCAAAGGTCCTCGTG\n", "\n", "idx 11 locidx 598\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[18 0 0 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[18 0 0 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 18 0 0]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 18 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 18]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 18]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 18]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[18 0 0 0]\n", "AGTTAGGTATGTTGAGTTAACCTGCCCCAAGACATATGAACGAACTGTCCTGTTTCTGGGTAGTATGGGACGTGGCTAGATTGCCT\n", "\n", "idx 11 locidx 599\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[21 0 0 0]\n", "45 M\n", "50 (45, 5, 5, 0)\n", "[11 10 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 21]\n", "66 C\n", "70 (66, 5, 5, 1)\n", "[21 0 0 0]\n", "AGCAGTTAACAGCTGTAAACTCTCACCCCATGCTGAGGCTGGCATMCACGTGGATAGAGTGAT-ACCGCTAATGGCGTTGTATCAT\n", "\n", "idx 12 locidx 600\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 23 0 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 23 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[23 0 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 23 0]\n", "TAACTTAGACGGGCATTGCACGATCTTTAGTACTGTGAGCAGCTTCCCTACACCCAGTACCGGAAGTAGTTCTTCCTGTGTTTAGC\n", "\n", "idx 12 locidx 601\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[22 0 0 0]\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 22 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 22]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 22 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 22 0]\n", "TTACGACGGTATGTGGCCCGTTGTTATGAAATGGCGGCAGGTTAGCATTACGGGGGCCTCGAGTATATTAATATTTTCCTTCGTAA\n", "\n", "idx 12 locidx 602\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 10 0]\n", "10 C\n", "15 (10, 5, 5, 0)\n", "[10 0 0 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 10 0 0]\n", "AGGCATTTTCCAGTAACGGAGCCAGATATTGGAATAGGAGAGAGCCACTCCAATCTGGGTCAGTTGCAGACGTTTTCCTGGCTTCC\n", "\n", "idx 12 locidx 603\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 24 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 24 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 24]\n", "CGAGCTGTGTGTTCTCTGGAACCGGCCTTGGCCTGATGAGGTGACTACGGGATCTTGATGTCTGCTTCTCTAGTCGAAGAGGTGAG\n", "\n", "idx 12 locidx 604\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[20 0 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CGGTCAGCCCCCCCGTCATAACGGGTCTGAGCTTGGCTCATGTTGAGGCTTGGAACTCACAATTTAGGGCTACACTGAGTTAGTGA\n", "\n", "idx 12 locidx 605\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 25]\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 25 0 0]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 25]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[25 0 0 0]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[25 0 0 0]\n", "CTAACGAACGCGCCTGAGGGCTTGGGGCTTTCGATGTGGGGGGGTCCCCTTGGTCGCCGTGGTCGTACTTCGTGGCTACCGCCCGG\n", "\n", "idx 12 locidx 606\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[18 0 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[18 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 18 0 0]\n", "AAGGTTTCCCACGTATTTCGGGCCGAGGCTCCGAGATATTCCGAGATCACGAACACGGTAATTTGCTGAAGAGCCCCTGTAAAGTA\n", "\n", "idx 12 locidx 607\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 17]\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[17 0 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 17 0 0]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 17 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[17 0 0 0]\n", "TGCCGGGTACTAGGACTGTTCTCTAGCATATCGGTGTTTGGTCCTCACAGAGCACCAAAGGTAGGCGGCCAGACCTCATCCTTACG\n", "\n", "idx 12 locidx 608\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 21]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 1 20 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[21 0 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 21 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[21 0 0 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 21 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 21 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "ACGTAACGATTCAATGTTCGCCTTGCCTTTCGTCAGACCTAACCGTACCGGAAACCGACCGATAGAATTATGGCATTTGGAACTCT\n", "\n", "idx 12 locidx 609\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[20 0 0 0]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 20]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 20 0 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[20 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TCACCAAAGTTTCATAGAGACAGTCGATTTGAACCCTGGGCATGACCCACCATTTAGAGTGGGTAGCAAACCCGACCACACGTGGA\n", "\n", "idx 12 locidx 610\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 17 0]\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 17 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 17]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[17 0 0 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 17 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 17 0 0]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 17 0 0]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 16 1]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 17]\n", "AGTTTCCTAAACCCCAGGCTTTGGTTAAGATGCGGTCCGCGATCGCCGAGAAGTTGCCAAAGCGTAGCTAGCGGATCCGAGCATTC\n", "\n", "idx 12 locidx 611\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 17 0 0]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 17 0 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 17 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[17 0 0 0]\n", "CACTCGCAGGCGGTATATCGGGGTGTAAAATCACCAAATGGTGGATATTCTATAGCATTTGGTTAGTAGAATGGCGACGTAACGCA\n", "\n", "idx 12 locidx 612\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 21 0 0]\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 21 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[21 0 0 0]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 21 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[21 0 0 0]\n", "ACCCGTTACACTACCGCATATTACTTGGCCAGGAACGTTGGTGGAAGGACGCACGCACGGTAGTTTCAAATACCTGAAGTGATCAC\n", "\n", "idx 12 locidx 613\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 26 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[26 0 0 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 26]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[26 0 0 0]\n", "GGTAGTACGAGGCTTATGGGGACGTTGATACCCGAGCGGACGTCCCGTCTGGAGGTAGAGTCATGCCCCGGAGCGCATATTCAGGC\n", "\n", "idx 12 locidx 614\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[20 0 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 20]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[20 0 0 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GCGTCGGGCGTCATACTTATGCGTTCCATCTCTGAATTAGCACCATCGCTACCCCCTTTATTGATATTCTCGGTTCGTGCCGACCT\n", "\n", "idx 12 locidx 615\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 21 0]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 21 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[21 0 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CTAAGCGAGAAGGGGCAATGATAGTGCCACTTTAATCAAAGGGCTTCATTTAGGGTCCGACACAGCCCTGATTTACTGAGATTAGC\n", "\n", "idx 12 locidx 616\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[20 0 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[20 0 0 0]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 20 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 20 0 0]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 20]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "CCCTCCCTGAGAGCGATGGCGCCTCTAACCTAGCTGAAGGCCGCTCAGCTCAAGGGGTGTTGTTAAAGCAGAGCTTGCATGGTTCT\n", "\n", "idx 12 locidx 617\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 20 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 20 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 20]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 20]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[20 0 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[20 0 0 0]\n", "CTCCCAGGTCATTTTGAGGAGAGAGGTACCCAAACTGGCGTAGTTGTAATCTGTCACGCCGGCATTTACGGTGTCCCAGATCTGAC\n", "\n", "idx 12 locidx 618\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 18]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[18 0 0 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 18 0 0]\n", "TTGACGCAGATGCTCCTTCTCGATCTAAAACGGCCAAAATTTAACCCTCCTAATATTCAGCTCCCTATGCGCAAGATTAATTTAAC\n", "\n", "idx 12 locidx 619\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[20 0 0 0]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TCACCCCGACAATGTCGGGCAGTTCCGATGGGCAAGAGCGCTGTGACCCGCGGCATGAGAGCCGTGTCGTGACTCAGTATGCTATG\n", "\n", "idx 12 locidx 620\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 20]\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 20 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CGTTAACCTCTGTCGGGACGCTGAAAGAGCGAGGCCGCGCTTTTAGTTATCTGGAAGTCCATAGCATCGGCAAGAAATATACTGTT\n", "\n", "idx 12 locidx 621\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[19 0 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[19 0 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TAGATGGGGTAGCCCTCACTTTGACGTAGCCCGTTCACCCAGTTTTTCTGTATTCCCATTCGCAACCCTGCTCCGGCGGAGATACG\n", "\n", "idx 12 locidx 622\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 18 0]\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 18 0]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 18 0 0]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GAGCTTTACGCATCAGGTCATGAACCATGGAGCTTATGGTTACTTGTGATACTTGCCTATGCTCTGCCCTATCTTATATAAACGAT\n", "\n", "idx 12 locidx 623\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[23 0 0 0]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 23 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[22 1 0 0]\n", "CTTAAAAATGGACGTATAACGGCCAGACAGCCGGCTAGGATCGCTGGACGACGCATCGCCATACCATGTGAAGTCGGGCGAATCTC-\n", "\n", "idx 12 locidx 624\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[20 0 0 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[20 0 0 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 20 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AAAGGTCGGAACACTTGCAGATACCCCGTTGAACACTAAGAGACGCGCGGGGCGGGCGTCTAACGGGGGGAGACGGCTTCTCAAAG\n", "\n", "idx 12 locidx 625\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 20 0 0]\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 20 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[20 0 0 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[20 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CACACATGACTCCTAGGCTATATACCCATAACCCTGGTGCGTGGCCGAACACCTGAGTATGACAAATTCTCGCCTTACTCGATTAG\n", "\n", "idx 12 locidx 626\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 19 0 0]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 19]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 19 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 19 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CGAACGCTGGGAACGCATCGCCGGAAGCGGAATACTGAGAGATTGCAACAATGCTCATGACGGTCTGACAATCCGATTATAGACAA\n", "\n", "idx 12 locidx 627\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 23 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[23 0 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CCTCGAGTACCTACATCGAAGAAAAGATAATGCTAAAATTATGAGCCCTATACTGCTGAATGCCCGTTGGCTAGGGAACCACTTGT\n", "\n", "idx 12 locidx 628\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 18 0]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 18 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 18 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[18 0 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 18 0]\n", "TCCCGTTCGCTTGACAGAGCGGCGTGTTCGTTTGCCGCACAAAATCGTATGATCTTGAACGTGCAACATGTCCAATGTATGAACCT\n", "\n", "idx 12 locidx 629\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 22 0 0]\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[22 0 0 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[22 0 0 0]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[22 0 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 22 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[22 0 0 0]\n", "AGTCGCAGCTCCCTTATTCCGTGTACCGATCCCGGAGCCTGAAGCGGTAGGTAAATGATACCAGGCGTCGGATACTTTTTTCAAAC\n", "\n", "idx 12 locidx 630\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 23]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 23]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 23]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GACTGAAGCACCCCGGACTTATACATAGTGTCGACCATGGCAAGAAGTGTATGGCTTGAGCGGAGATACATTCAGGGACCCGTCGC\n", "\n", "idx 12 locidx 631\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 20 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TTAGTTCTTAGACTATTCGTTAACTCGAGGCGAGTGCCCTAAGCGCTATACGTGGCAGGACCTGTTGGAAAAACACGCAGAAAGGA\n", "\n", "idx 12 locidx 632\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 21 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 21]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 21 0 0]\n", "60 G\n", "65 (60, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TGGCGGACTAAAAGGAAGCGCAACACTCACATCGATTGATCGGATGCTGAACTACCCGAGGATTTACCAACATCTGTCATAGTTCC\n", "\n", "idx 12 locidx 633\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 21 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[21 0 0 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AGTTTTTTCCAGACCCCGTTGGGTATCTGACGAAACTAACCCGTTAAACTACTTTATAGCAGCCTCTTGCTCCTGGAAGGGTCGTA\n", "\n", "idx 12 locidx 634\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 21 0]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[21 0 0 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[21 0 0 0]\n", "CGTGAAACCTTTTAGTTCTTTTCGCCTAGACACGACATTCTGGCTGCTCGTCGTGTTTTTACTGTATATACACGCCCTATGCGTCA\n", "\n", "idx 12 locidx 635\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 15 0 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 15 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 15]\n", "GGATACTTGTCTTGAAGTATTGAAATTTCCGGGATGCTTCGCGCTTGTATTCCCAGAGCTTACTAGGCTATGCTCCTAGAAAACGT\n", "\n", "idx 12 locidx 636\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 22 0]\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 22 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[22 0 0 0]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 22]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 22]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 22]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 22 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[22 0 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 22 0]\n", "76 G\n", "81 (76, 5, 5, 0)\n", "[ 0 0 0 22]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 22 0]\n", "TGGATACCCGGTTCTACCCATACCACTATCAAGTGGCCTTTGCTGGACAAAGATTCGAAGGTGGCGGGTCCGCTCTGGGTATTCTG\n", "\n", "idx 12 locidx 637\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[19 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 19 0 0]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 19]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 19 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 19 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 19 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GGATCGAGCCTCAGGGCAGAGGTGCACCATTATAAACGCTCCTCCGTAAACGGCGATAGTGTGGTAGAGGGAAACCTATAGGGTAC\n", "\n", "idx 12 locidx 638\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 20]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[20 0 0 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 20 0 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GCGAGGCAAACGTTCACGTGAACACAAAATGAGGTGAACTTCACGGCTCCGGTGAGCGACATTGCTAACGACAGAAATACTCTACA\n", "\n", "idx 12 locidx 639\n", "2 R\n", "7 (2, 5, 5, 0)\n", "[ 0 11 0 10]\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 21]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 21 0]\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GTRACGTGGCTGCTCGACACGCCAGACGGGCGCACTCAAAACAGGCTTAGGCTTTCGGCGGAAAACGAGCTTTGGAAACGTGCATT\n", "\n", "idx 12 locidx 640\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[15 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 15 0 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 15]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 15]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 15 0 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[15 0 0 0]\n", "CTAACGTAGAAGCGGTAAGTATTACTGGAGAGGGATTAGACATCAAAAGAGCGTACTGTGAAAAGGATGCGTCACAGCCTGTTTAT\n", "\n", "idx 12 locidx 641\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 15 0]\n", "ACCAAAAATCACTCAGTACGAACCTCGACGATGGTCAGTGTTAAATGTTGCAACTACCCGTTCAGAATAGATTATCTGCTTAGCTT\n", "\n", "idx 12 locidx 642\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[23 0 0 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 23 0 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 23 0]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[23 0 0 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 23 0 0]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[23 0 0 0]\n", "CGAAGGTTGTATGTGCCTATATCAAGCACGAAACATCCTACCAAGAGGTCTAGCTATAGCGCGGCAATAATAACACTCATGCTCTG\n", "\n", "idx 12 locidx 643\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 20 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 20 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CTCAGTATCGCCATCGGGTCCTATCCTATTCATTAGAGGCACTGTTCCCCGCGTCGGTTTGATGCGCAATAAGTGACGAGTAGGAT\n", "\n", "idx 12 locidx 644\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[18 0 0 0]\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 18]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 18 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GTTAAACTCGTGGTCCTATGGGGAGCCCATGTAGCATATGAATACTGCCCTCACTCGATTGCCTCATTTGCTGTAGGTATCACTGC\n", "\n", "idx 12 locidx 645\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 19 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[19 0 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 19 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CATAAGACGCTAGTGGCGACATAGTGCGCGATCCGGGCAAATTAAGAGAGGGGGTCAGAAAGTGAGTGTCAGCGGGTACGCCTCAG\n", "\n", "idx 12 locidx 646\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 17 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 17]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 17]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 17 0 0]\n", "TGCTAGTATTGAAGATTTATACCAAGGGTTTTCGTGAGGCCCTAAGTCAGGTGTTGTTGTGGTCCAACGCTGGCAACGGAAGCAGT\n", "\n", "idx 12 locidx 647\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 24 0]\n", "40 S\n", "45 (40, 5, 5, 0)\n", "[12 0 0 12]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 24]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[24 0 0 0]\n", "CCGCTGTTAATAAGTTTGTAGAGTTCAGTTAGCGTCGTTTSTCTGCCCGGCAGAGCGTTCGTCTCCTGGGGCACATACTGGGGGTA\n", "\n", "idx 12 locidx 648\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 22 0 0]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 22 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[22 0 0 0]\n", "ATCGCGGATCGTCTGACCGAGATTCCTCCAAGCAGAGAATATGGCGGCGTCTGTTCAAATCTAATGGAGTGGCGGGGGTCCTCCAT\n", "\n", "idx 12 locidx 649\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 18 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 18]\n", "40 M\n", "45 (40, 5, 5, 0)\n", "[9 9 0 0]\n", "46 Y\n", "51 (46, 5, 5, 0)\n", "[9 0 9 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[18 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CCCGTAGCCTACACAAGGAGCTTGAACTTTGGGAGTGCACMAGTGGYAAATAAACTATAGCCAACTAGGTTGTCGCGGCTGCGTGA\n", "\n", "idx 13 locidx 650\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 22 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 22 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[22 0 0 0]\n", "TATTAGGTTTCTCCGCGGTAATGAAGGTTGCGTCGGATACGCTATGGCCCTTCGTTGTGACTCTGCCTATCGGGAACGATCATGTC\n", "\n", "idx 13 locidx 651\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[18 0 0 0]\n", "46 -\n", "51 (46, 5, 5, 0)\n", "[18 0 0 0]\n", "54 T\n", "58 (54, 5, 5, 1)\n", "[ 0 0 18 0]\n", "71 A\n", "75 (71, 5, 5, 1)\n", "[ 0 18 0 0]\n", "75 T\n", "79 (75, 5, 5, 1)\n", "[ 0 0 18 0]\n", "GGTCCCCAGTGGTAAAGTCAGGTTGTTACATCGACCATGTAATCGC-CAGTGCCTCAGACATAAGTCCAACACTATCTTCGGGTTA\n", "\n", "idx 13 locidx 652\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 22 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 22 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[22 0 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[22 0 0 0]\n", "TTAACGCAAGACCCATGTTACCCTGGCAAGTTTCGCAACGGATACCACACGTCCCTGGAACCGGCTGTTGGTGACCCCGACTGCAG\n", "\n", "idx 13 locidx 653\n", "9 W\n", "14 (9, 5, 5, 0)\n", "[0 7 7 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 14]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 14 0 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 14]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 14]\n", "TTGACACCGWTCCGCGGAACCATCCGCACTCGCGGGACAGTTGAGGCAATGAAGGATGACCCGAGGCGTTCACTAGATGTTCCTCT\n", "\n", "idx 13 locidx 654\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[18 0 0 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 18 0 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 18 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[18 0 0 0]\n", "AAAATGCGGAAATCGCCCTCCGGTTCCTCAAATAGAGATCATACCAATTAGTACAATGATATACATTGCCGGCGTCGTTAGGAGCC\n", "\n", "idx 13 locidx 655\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 22]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 22]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 22 0 0]\n", "ATGTCTTAGTGTTTACGTTAGATTGACCCGGTTAGGCGTAGTTACTGAGGTTAAACCCACTCTAAGTCGATGTGATAAGCCCTCGA\n", "\n", "idx 13 locidx 656\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 20]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 20]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 20]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CCTCTTGTAACGTTTCGAGTGTTTTTGGGAGTAGATGCGTGATCAATCTGTTAGTTGACCCGTCCTGAGAGTGATAGTTCCGTTTA\n", "\n", "idx 13 locidx 657\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[21 0 0 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 21]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 21 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[21 0 0 0]\n", "CCGGTCAGGTCGCGGATCCTAACGTCCATCACTAATGCCCATTTGTGCTCCCAGTACTAGCGCATCTTTTCTACTTAGCTATGCTG\n", "\n", "NOT HERE\n", "idx 13 locidx 659\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[26 0 0 0]\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 26]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[26 0 0 0]\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[26 0 0 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 26]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 26 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 26]\n", "GGCCGGAGCGAAGTATGTACTTCACCACAGACTGTTAACTGACATATGGAGCGGCTATTCACATTATACATCCGCGGTCTTCAAGA\n", "\n", "idx 13 locidx 660\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 16 0 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 16 0]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 16 0]\n", "AGTATGATACCCCGGCACCTTAACAACGGTCAACGGTAAAAACGGTATCAGCGTCCAGTCCAGGTATTACCAAGGGGTCCGCTGTT\n", "\n", "idx 13 locidx 661\n", "58 S\n", "63 (58, 5, 5, 0)\n", "[12 0 0 13]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 25 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 25 0]\n", "CGTTGGCCTGAGCTCAAACTCTCGCGGAAACTCGATCGACGCTCCGGATCGGATCAGASGGGTCGACATCGTAACTGTGTCAACTT\n", "\n", "idx 13 locidx 662\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 23 0 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 23 0 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 23]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[23 0 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[23 0 0 0]\n", "GCGACTCTATGGAGGAAGGCACACCCGCCATTGCAGGTCATCAACTATACTGAGTGCCGTGTTGGCACCATCCAGTGTGAATTACA\n", "\n", "idx 13 locidx 663\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 18 0 0]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 18 0]\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 18 0]\n", "GACAAGATAGGAACCAGGATAGATCAGTCAGCTCCGATGTATGTAGACCGGGTACATTCCTATTAACGCAGCGCCCACTCCGTATC\n", "\n", "idx 13 locidx 664\n", "5 W\n", "10 (5, 5, 5, 0)\n", "[ 0 9 10 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 19 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 19]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 19 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 19]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[19 0 0 0]\n", "TCGGAWAGTAGTAACTCGAGACGCTGCCTGGGTACTAGAGAGCCTCGGCGAGTCTATGGTAGTAGGGGCCCACTTGGCTTCATGAC\n", "\n", "idx 13 locidx 665\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 16 0 1]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 17 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[17 0 0 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[17 0 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 17 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[17 0 0 0]\n", "AAGCTTGCAGGCTTTCACATAAATCTGTACAAGATATTGCTTTCTGGTCAGTTAGCGAGAGACTCTTTTGCCTTTGCTCGCCCCTA\n", "\n", "idx 13 locidx 666\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 18]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 18 0]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GAGCGAAACCGGCCGGCGCGCGTGGCTAACGTTCCTATCGCTTGCTTGTAGCGCAATCGGAATCTAAGTGGCGGCCTCCTCCAATC\n", "\n", "idx 13 locidx 667\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[22 0 0 0]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 22 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 22 0 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[22 0 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 22 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CTACATGACTTAACTGAATCCGGAGTTCCTCTTAGATGTGCGTTTTGTTAGGAGATAGGCACACTGCACCAGGCGGGTGGGTAAGC\n", "\n", "idx 13 locidx 668\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[20 0 0 0]\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 20]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 20 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 20]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 20 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 20 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CGTCGAGGCGATTCGTTGGAAACTTGCACGGCTTCTCCTGAGACCCGGCGTTGCCTATTGTGGATAGCTGTAGCAAGGCATGAGGG\n", "\n", "idx 13 locidx 669\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 21]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 21]\n", "GAAGAGGTCCGGTATGCCATGAATCCGCTGCTAGATAACAGAGATGGGTTTATTGCGTGCTCTTCAGCAATAGAATTAGTAGGGGA\n", "\n", "idx 13 locidx 670\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 24 0 0]\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 24 0 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 24]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[24 0 0 0]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 24 0 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[24 0 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 24 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[24 0 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[24 0 0 0]\n", "AAGTGAAAAACAACTCAGCGCTGGATTCCATCCCAGGCACTACCTCCTAGCTGGAAGGGTCCTCGAATGAGTAGTATTACTGACCC\n", "\n", "idx 13 locidx 671\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 18 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 18 0 0]\n", "79 S\n", "84 (79, 5, 5, 0)\n", "[ 8 0 0 10]\n", "CTCAAGACTTAGGATCTGTGCTCTACTTGTTCCACATTGTGACAAGCGCGGACTTACCACATCCAATCCTCCTCGGTACSAAATAT\n", "\n", "idx 13 locidx 672\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 21 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[21 0 0 0]\n", "42 W\n", "47 (42, 5, 5, 0)\n", "[ 0 10 11 0]\n", "CTTCCCTAACCTCCCCGAATTCTGCTCGCGTGCCAAGTTCGTWCTTGGCAAAGCCACGGCATGTCCTCGTAAAGCTGTAGATGGTT\n", "\n", "idx 13 locidx 673\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[21 0 0 0]\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 21 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 21 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 21 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 21 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 21 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 21]\n", "73 T\n", "78 (73, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TCCCGGCGCTCTTCTACTCATACCTCCACTTCTACGTTTAGCGCATGTTGGGAGGTCCGATGAAGAGAGTGCGTCGTATCTCCAAT\n", "\n", "idx 13 locidx 674\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 26 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 26 0 0]\n", "ATCCTCTGCTCCAGTCACTTGTACAGATCATGTCGTGGGCCGACATGTACAACAGTCATGGAGTTATAAAGGTAAAAACGGCCCAA\n", "\n", "idx 13 locidx 675\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 12 0]\n", "5 G\n", "10 (5, 5, 5, 0)\n", "[ 0 0 0 12]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 12 0]\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 12 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[12 0 0 0]\n", "38 W\n", "43 (38, 5, 5, 0)\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[0 5 7 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 12 0]\n", "CTTCTGAAGCCTTAAATCCTCACGTCAACATGATGCCTWCATGAATCATATACTGTTTATATTATCCTTATACACAAAAGAGCCTA\n", "\n", "idx 13 locidx 676\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[22 0 0 0]\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[22 0 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 22 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 22 0 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 22 0]\n", "AACGTCAAGGACCTAATTGCGGGCAATGGACCCGTGAACTCACGTTTCTGCTTGAGCAATAGCAGGTGTAATTTGTAGTCTAAATA\n", "\n", "idx 13 locidx 677\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[20 0 0 0]\n", "CACACCGCGCACACGCCGACGCTTCCACGATAAGCCCACTTACCTGTGCACGACCTGTGTATGGGCGCGGATCAAGCGCCGCACTT\n", "\n", "idx 13 locidx 678\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 21 0 0]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TACAAGAAAGCGAGATCTCGACTTTACGGATTGCGCCGTCTAGAGGATTGGTCATTGTTTGACAGATCTGTGAGACAGATACTGAC\n", "\n", "idx 13 locidx 679\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 19 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GGGGTCGTCACTACAAAACGTAAACATGTAACATCGGGGTAGTGATATCTTAGCCCGCTCATAATTGTAACCGGTTCTATACTGGC\n", "\n", "idx 13 locidx 680\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[24 0 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 24 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[24 0 0 0]\n", "AAATGATATTCATGGCGAAGGTGTGTCTCTGCGACTTGCTTCAATCGAGAGGACTCTGGTTTATTTTGGGAAGCATACTGCCTAAG\n", "\n", "idx 13 locidx 681\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 20 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GACATTAGATATCCGACTAAAGGTATCTTAAGTTCTTAATAGATACCGCAAAACTCACGAGTGGTTTTCCTCATCGGATGCTTCCC\n", "\n", "idx 13 locidx 682\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 19 0 0]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 19 0 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 19]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[19 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[19 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 19 0 0]\n", "87 -\n", "91 (87, 5, 5, 1)\n", "[0 0 0 0]\n", "TTTTATGTACGACGCGTCGTGGACCACTGCATAAATCAAGCTTACCTTAATTAGGCGGAAGCCAGGCCCGTTTGCGTACAACACAA--\n", "\n", "idx 13 locidx 683\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[20 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 20]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 20 0 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 20 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 20 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AATTGCGACAAACGCTATCTAGCTTTCTGCAGGCGGAAATTTTTCGGCACTCATGTAAATCCAGCTCGAGGGTCGCTTTTCCCAAC\n", "\n", "idx 13 locidx 684\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[14 0 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 14 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 14 0 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[14 0 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 14]\n", "CTATGCTCAAAAGGCTCCCGAGATCGTTGTTGAGGCCTCGATCAAACTATAGCGTTTCAACGGAGCCTTCTCATACACAAGTAGAC\n", "\n", "idx 13 locidx 685\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 25 0 0]\n", "TATAGTTTCATTTTACCGGAGATACAGGGCCGAATTCATTGGCGCCGCTGTAGACGGCCTTTAACTCTCGTAACCGGTAGCAAGTT\n", "\n", "idx 13 locidx 686\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 19]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 19 0 0]\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 19 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 19 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GATACAAGTAGAGGACTTATGTCCCGCTATCGAGCCGAAAACGGACCTTGCGAAAGTACCGGTCTTTTATGGCGGAAAAAAGGGTC\n", "\n", "idx 13 locidx 687\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 20]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 20 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GTCTCACGGCGATGATCAGCCCAGTAGCTACAAACCAATTCTAAGATCAGGTGTAGCCAGCGATTCTAGAGGCGCGAGTTCTGGCG\n", "\n", "idx 13 locidx 688\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[22 0 0 0]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[22 0 0 0]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 22]\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 22]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 22 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 22 0 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 22]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 22 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 22]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 22]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[22 0 0 0]\n", "GAGGCGTATAAGCCGCGTATGTAGGCTTGATGGGCGGCTAAACAACTTTTGGAGTCTCCAGTATACCTTCGAACGATTGGCCTATC\n", "\n", "idx 13 locidx 689\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 18 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 18 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 18]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[18 0 0 0]\n", "TCAAGTGCGCGTGAGTCTTCACCTATAGGCGGACCAGGCAAAAGGGTGGTAGCAAAAGACTTTTGTGATTGCACAGTTATTCACAC\n", "\n", "idx 13 locidx 690\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 20]\n", "36 M\n", "41 (36, 5, 5, 0)\n", "[10 10 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[20 0 0 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 20]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GTCCATGACACGGACCCAAATTCAAGTTTTACCTGAMTTTGGTAATCGAGTAACCGCGCTCCGACTTAATCACTCCAATCTACGCA\n", "\n", "idx 13 locidx 691\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 16 0 0]\n", "59 C\n", "64 (59, 5, 5, 0)\n", "[16 0 0 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 16 0 0]\n", "CAGGTCACGAAACACGCATTATTGCATGTCGTATGATTACTAGCAGGGCTATTATGTAACCATATATCGCCCCCCCCCGAACCTCA\n", "\n", "idx 13 locidx 692\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 23]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 1 22 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CTCCGTAACCAAGTGGGAACTCTATACGTACAACTATGTGACCCAGGCGTAAGCATTCAGCACCACCGTTGGTGTAGGCAGACATT\n", "\n", "idx 13 locidx 693\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 22 0 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[22 0 0 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[22 0 0 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 22 0 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 22 0]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[22 0 0 0]\n", "AGGCCGACTAGCGTTGCAAAATGTGACTACTCTAAAGATTCTGGCAATTGTATTGAGCACTGGTTGGGACCCACCACCCCAACTTC\n", "\n", "idx 13 locidx 694\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 18 0 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[18 0 0 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[18 0 0 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 18]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[18 0 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GCCGGGAAATGGTCCGCAGGCGCGTCTTTTGCGCTTCGCGGGGTGCATCAGTATTCGCCGCGTATGAAGATGAATCATAAGCCCCA\n", "\n", "idx 13 locidx 695\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 22 0 0]\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[22 0 0 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 22 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 22 0 0]\n", "TTTAAGGAGCGCATACTTTGGATATGTCGAAGGGCAACTCTGCATTCTACCTAGAGCGCTACCGCAGGCATACGCATTGCTGGGTG\n", "\n", "idx 13 locidx 696\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[21 0 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 21]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AATAAAGAATCGTACCTCCCAAATCGCTATCACAAGTCGTCGCGATATAGATCCCGGAAGTGCGTGTTGAACGCGATCGCGTAGAC\n", "\n", "idx 13 locidx 697\n", "28 G\n", "33 (28, 5, 5, 0)\n", "[ 0 0 0 19]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 19]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 19 0 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 19]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TCTATGGGAGAATCTAGAGCATTAGCAGGCGGTTGCCGTCAGGCTAGTTGTGTACGTAACACTTCCCGTGCGAGTAATCAAAACTC\n", "\n", "idx 13 locidx 698\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 24 0]\n", "41 G\n", "46 (41, 5, 5, 0)\n", "[ 0 0 0 24]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 24 0]\n", "62 S\n", "67 (62, 5, 5, 0)\n", "[12 0 0 12]\n", "GTTTCGATCTTTTATGCCTTTTTTTAGTACCGACAATAGTTGCTAAGTCAGAGGGGAAGGTGSGAGCTCGACCGTTAACCCTTCGC\n", "\n", "idx 13 locidx 699\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[19 0 0 0]\n", "56 Y\n", "61 (56, 5, 5, 0)\n", "[ 8 0 11 0]\n", "77 T\n", "82 (77, 5, 5, 0)\n", "[ 0 0 19 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[19 0 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CGGCTTTTGATTCCAGCTATGGGCTCCATTTTTGTAATATCAGGGTCCTCGAGGCAYAGGTATCATAACATACTGGTTCCTCCAGC\n", "\n", "idx 14 locidx 700\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 21 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 21 0 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 21 0 0]\n", "67 W\n", "72 (67, 5, 5, 0)\n", "[ 0 8 13 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AGGTCGAAGGGGGGTATTGTACTTAGTTCAATTACGCAATGAAATGCCAGAGGTCAATGCAAGGTAAWTTTGAGGAGGCGTATTTG\n", "\n", "idx 14 locidx 701\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 18]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 18 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 18 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 18]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 18 0 0]\n", "CAGTAATCTCTGCCCAGATTTAGAAACGTGCCAGCAAAGCCAACACATAACGCGGTGATCCGGCTGTTTACGGACCGTCAGGATCA\n", "\n", "idx 14 locidx 702\n", "6 C\n", "11 (6, 5, 5, 0)\n", "[20 0 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 20 0 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GGGCCCCTGTGACAAAGCCTGTATAGCAGTTAAAATACGCGATTACACTACATATCTGAAGACTTCACTCCTCGGGGACAAAAT-TC\n", "\n", "idx 14 locidx 703\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 21 0 0]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[21 0 0 0]\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[21 0 0 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 21 0]\n", "ACGCATTAGATGTACCCATTGGAACCGCGACGTATATGGCCTGTACGAACGGCTTCACGGTAGTTGGCAATTACTGCATAATTCTC\n", "\n", "idx 14 locidx 704\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 17]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 17 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 17]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CCCAGTAACCAATGAGGTCTCCGGCAGTCTGACCCGCTGCTGGGAGTTGGTACCTAGTCGGCTCCGGTAAGATCGTAATTAGTATC\n", "\n", "idx 14 locidx 705\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 21 0 0]\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 21 0 0]\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 21]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 21]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 21 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[21 0 0 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[21 0 0 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CAAAACCGACTCAATCTAGTACCTGATTCTGTACATGGTCAGTTACAATTAGTATACCCACCGATTAATAAGATCGAGTAAGCAAG\n", "\n", "idx 14 locidx 706\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[22 0 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 22]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 22 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 22]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[22 0 0 0]\n", "GTTACTGACGGCGGTAAGGAATCGACCGCACGTGCAAACTGGAAATGGAAAACAAGGATTGGAAATGTCGAAGCCCACCGTCGCAT\n", "\n", "idx 14 locidx 707\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 22 0 0]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[21 1 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 22 0 0]\n", "ATTGCAGATCATATGGGCAGTAACCCGACCCGAGAGTGTGCCCGCACTAAGGTGGTATGGAAAACCCCGCTCCCTAAGGGCCATGA\n", "\n", "idx 14 locidx 708\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[22 0 0 0]\n", "GGCATCTTGTGAGGAGGGCGTCAGTGGTCCGAATTTACCTCTAAAGATATCACCTACGGCCCGCTCCGCTTAGGCTGGTTTTAATC\n", "\n", "idx 14 locidx 709\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 22 0]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 22 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 22 0]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 22]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[22 0 0 0]\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 21 0 1]\n", "TTCCGAGTCTTACTGTCCCAACGCTAGAAACAGGAGCCAACGCCATACACTAATAGCCGGCCGGAGCACCGCCCGTTACCGACGAT\n", "\n", "idx 14 locidx 710\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 21 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 21 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 21 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GGTACGACCAATCTAGCAAGCGAGGGTAGTTACGTCTACCCTCCCAAGCAAGACTCAAACAGACAAGACTTTCGACTGCATGTCCC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 14 locidx 711\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 23 0]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[23 0 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GCGTTCAAGAAGATTAACCTTAAGCATGCAACACGCACGCACGAAACCGAATGGTCAGTTGGCCCTAAATGCGCTTAGTTACGACC\n", "\n", "idx 14 locidx 712\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[21 0 0 0]\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 21 0 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[21 0 0 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[21 0 0 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 21]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[21 0 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[21 0 0 0]\n", "CAAGATCACGGCGGACAGAACCGCCCCTTTTCTTGTTGCTGGTTAACTTCACGCCGTCATGGTTAGTGGTCAGGCTTTACAGGTCC\n", "\n", "idx 14 locidx 713\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 19]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 19 0]\n", "22 S\n", "27 (22, 5, 5, 0)\n", "[10 0 0 9]\n", "24 G\n", "29 (24, 5, 5, 0)\n", "[ 0 0 0 19]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 19 0 0]\n", "48 w\n", "53 (48, 5, 5, 0)\n", "[ 0 9 10 0]\n", "TAGATCGTGGTTGGCGCGGCAASTGGTACGACGGATACCCAGGCAGGGwTTTACAGCGTGCTGTCATCGCCAGAGGTTGGGAGCAT\n", "\n", "idx 14 locidx 714\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[23 0 0 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[23 0 0 0]\n", "GAGCCACCGGATAAAGGCTGTATACTACCGGAACCTATGTTCGCACCTGGGGCAGCAGGGATTTGTTTTCGAATAATAGAAAGTTT\n", "\n", "idx 14 locidx 715\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 21 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 21]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[21 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[21 0 0 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 21 0 0]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 21 0]\n", "GCCGTGCCAGGACACACTCAAGGGTCATCTGTTGCGAATTGCCAATGTGCTGCGGCATGAAACGTACTCACTTGGTCAAGCCGCTT\n", "\n", "idx 14 locidx 716\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[17 0 0 0]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[17 0 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 17 0]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 17]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 17 0 0]\n", "GTTCTACCGATAGTCGGTAATTCTATGGCCGAGTTGTTTTAACGTTCGTTTAATTGTCTGGCCGGAGCTGCCGATTCTCCACCAAG\n", "\n", "idx 14 locidx 717\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 16 0]\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 16 0]\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 16]\n", "24 G\n", "29 (24, 5, 5, 0)\n", "[ 0 0 0 16]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 16 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[16 0 0 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 16 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 16 0]\n", "CCTTGGGGTAAAGAAGGTCTAAAGGAATCACCACCCTCACTCCCTGAGAGTACGAAATGGAGACGAGCCTTTAATCTTCGTAGAGA\n", "\n", "idx 14 locidx 718\n", "27 T\n", "32 (27, 5, 5, 0)\n", "[ 0 0 23 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 23 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 23]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 23]\n", "AGACGCTCAGGTTGGAATCGACGGGTGTCGAGTCCTCGTCTCCTGAACTAAGTATCTAGTACTAACGATACGAAGGCAAGAGAGTG\n", "\n", "idx 14 locidx 719\n", "11 G\n", "16 (11, 5, 5, 0)\n", "[ 0 0 0 18]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 18 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[18 0 0 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 18 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 18]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GCACGAAGCTCGAACACGCGCTCCCTCGACCCGGATTCACGCTGGCCACAGTTGGCTTCTCGTTACGAGCATGTATTACGTAACTG\n", "\n", "idx 14 locidx 720\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 20]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 20 0 0]\n", "77 S\n", "82 (77, 5, 5, 0)\n", "[11 0 0 9]\n", "CAACCATGATTCCGAGATACAGTGCTTGAGTTCTTTCTCATGTCTGGGTGCGATAGGAATGAAGTTTTGGCCCTGGTSTGGCCTTC\n", "\n", "idx 14 locidx 721\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[16 0 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 16]\n", "ACAACCACGAAGGTTAGGACCAGTTAGCATGAATCTACATTTTCTTTCGTCCTACGTCATAATATACAACCCCGGGAATCTGCCGT\n", "\n", "idx 14 locidx 722\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 20 0]\n", "TAGGGTTCGAGCGTTTGTATCCGGCGTTTGCGCCTCTAAGACCTATTGTCCAGGATTTGCTACTCCGTTAAAACCGGGTGGTTTGT\n", "\n", "idx 14 locidx 723\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 20]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 20 0 0]\n", "31 T\n", "36 (31, 5, 5, 0)\n", "[ 0 0 20 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GTGTAAGGACTGATGCATCTACCGTTTAACCTCGATTTGGTTGGGGTAAAACCAACCATGCACTCTCGTTGCTGAGCGTTCGGTAC\n", "\n", "idx 14 locidx 724\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 17]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 17 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 17]\n", "64 C\n", "69 (64, 5, 5, 0)\n", "[17 0 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TCGAGTAGGGCAGGGACGCTCTAAAACCCTGATCAACTGCAGAGATCGGCAAGCCAACGCCGTGCAATTTGTGTGCATCATTTCAA\n", "\n", "idx 14 locidx 725\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 17 0 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[17 0 0 0]\n", "25 K\n", "30 (25, 5, 5, 0)\n", "[ 0 0 10 7]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[17 0 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[17 0 0 0]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CCGCCCTGCACAGATCCTGAGTCGGKCATCCAGCAAGTATGATGAAGGATACAGCTGCATTGAAAACGGCGATAATGACTTTTAAG\n", "\n", "idx 14 locidx 726\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 16]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 16 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 16]\n", "AGCTGACCAAGATTCATACTAGGATGTGGAGAACCGTATTTTTGGTGAAAGACAAAAGACGTGCTGTACACATACCCGTTGCATGC\n", "\n", "idx 14 locidx 727\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 19 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[19 0 0 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[19 0 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 19]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[19 0 0 0]\n", "TATGACAGCTTCGCCAGGCTTCGATCTGCTCCTCGACACGACCCTAGCGAATACACACCTCTTGCAACCTAGTTGCTATGTTTGCT\n", "\n", "idx 14 locidx 728\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 21]\n", "5 A\n", "10 (5, 5, 5, 0)\n", "[ 0 21 0 0]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[21 0 0 0]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 21 0 0]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 21 0]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 21 0]\n", "ATCAGAATATGGTATGCGACGATCACCACGGAAGATCTCGGTGACGTGAACTGACGGAGACGCGTGAGGTAATCTATTCGAGACTA\n", "\n", "idx 14 locidx 729\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 19 0]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 19 0 0]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 19]\n", "63 R\n", "68 (63, 5, 5, 0)\n", "[ 0 14 0 5]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 19 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 19 0]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 19]\n", "ATTTTTCACCAGTCCGCCATCGATTACGTCTGAGGTGAGTATTACAGTTCACCGGGAGCCCGTRAGAGCGGGGCATTAAGGTAGCT\n", "\n", "idx 14 locidx 730\n", "5 T\n", "10 (5, 5, 5, 0)\n", "[ 0 0 20 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 20]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 20 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 20 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[20 0 0 0]\n", "TGCACTGTTTCGTTTTTCGAGTATTCATGATGAAGGCACAACCTGGTATGATCACATTGGGCGCTTAATCGGGCCACTCACCGAGA\n", "\n", "idx 14 locidx 731\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 22 0 0]\n", "12 C\n", "17 (12, 5, 5, 0)\n", "[22 0 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[22 0 0 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[22 0 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[22 0 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[22 0 0 0]\n", "GCAGAGGTCAAACAAGAGGTAATTGATGTCAAATTCAAACGCAATGTCATTGGTTCTGCTTGTGCGTCTTTCCCCCCTTAAGCGCA\n", "\n", "idx 14 locidx 732\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[20 0 0 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 20 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 20 0]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 20]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 20 0]\n", "AGATGGGCCCATATGGCCTCTCCAAGATCAGCAATTTGAAGGCATGGGCTATGATACTGCTCCTGGGCGCGGGATTAACAAAGCGT\n", "\n", "idx 14 locidx 733\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 20 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 1 19 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 20 0]\n", "AAACTTAGCCGGAACGCTATCGCCCGAATGACTCTCGGTGGGATGTGGTGCGCGTGAGTACAAACTAGCTCGAAAGAGAGTGCCGT\n", "\n", "idx 14 locidx 734\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[19 0 0 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 19 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 19 0]\n", "AACCGTTTAGGAGGAGACTATTCGAGTAAGGACTCGTCCCCTTCTATCAGTACGTCTACGAGTCCAACACCTGGAGCAATATCCAC\n", "\n", "idx 14 locidx 735\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 0 0 0 22]\n", "4 A\n", "9 (4, 5, 5, 0)\n", "[ 0 22 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 22]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[22 0 0 0]\n", "GTCCAACGAACTTAAAGGACCCTAGAAAGTCGTTAGTGTACAACCCCCTTACTTTATGGGGGAAGCAATCTTATATGCATTAAACC\n", "\n", "idx 14 locidx 736\n", "13 T\n", "18 (13, 5, 5, 0)\n", "[ 0 0 26 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 26]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 26 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 26]\n", "GTGTCCTGCCCTGTTTGCAGTTAATATAACGTGGGTACCAGATGTACATGTAATCCTACACGCGAGGAGTACAACGTTGGCAGGGC\n", "\n", "idx 14 locidx 737\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[16 0 0 0]\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 16]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[16 0 0 0]\n", "ACCGGATTCAAGAGATACAGACAATAGAAAGTCTGAGCCCGCGGTCGTTGAGAGTCTGGTCCTTGAGTTTCACTTCGGGCTAAACC\n", "\n", "idx 14 locidx 738\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[24 0 0 0]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[24 0 0 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 24]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 24 0 0]\n", "TCAGGTGATATTTGTTGTACCACGTGACGCCGCTCCATCTCAAGAACTTGTATTTCTATACTCTTAAGAAGTGGGTAAAACCCTCG\n", "\n", "idx 14 locidx 739\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 20]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 20]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 20]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GATGGAGACCCCGGGGTTTCTCAGCGGCATAGGTCCATTTGTCAATGAGGTTAAATGCTTCGAGCAGATACGTGCACGCTTCCCAA\n", "\n", "idx 14 locidx 740\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 17 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CCTGCAGGTTTAGCCTATTTGATTGCCGGACCCGATGCGGTGAACCGAATTTGAGTGCACAGGGGAGGATCAGGAGGTTCTATCAC\n", "\n", "idx 14 locidx 741\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 23]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 23 0 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[23 0 0 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 23]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 23]\n", "AGCCTAATGAACGGCTTGCACATCAAGTCTGCACTATCTGCACCATAACGTCTGTATGGTACATTACATATAATATTGCAGGTGCT\n", "\n", "idx 14 locidx 742\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 22 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[22 0 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TGTATTGTTATAGTCTGGAAGACAGCTGGTATCAGATCTGATGCTTTCCTACGAAGCACATATGTACGGTAGCCGGTGGGGCATTG\n", "\n", "idx 14 locidx 743\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[18 0 0 0]\n", "18 T\n", "22 (18, 5, 5, 1)\n", "[ 0 0 18 0]\n", "29 A\n", "33 (29, 5, 5, 1)\n", "[ 0 18 0 0]\n", "57 T\n", "60 (57, 5, 5, 2)\n", "[ 0 0 18 0]\n", "TCTCCTG-AATGCGGCGCTAAGTATAAGCAACCGCGTAAGTCA-TTGACCGTTCAAATTTCAAGCATGTCACACGCCGCACTTCGGGC\n", "\n", "idx 14 locidx 744\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 22]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 22 0 0]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 22 0 0]\n", "GTACGGACCAGAAATTGATTCGTGGCGACACCGGGGCGGGTCGGCCAAGATTCAACGCAGGGGCCTAAAGCGCACAAAACGTTTTC\n", "\n", "idx 14 locidx 745\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 19 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 19]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 19 0 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[19 0 0 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 19 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 19 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 19 0]\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 19]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 19]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 19]\n", "CGCCCGGACAAAATGGTAGTCTATCGGTCCACCCAAGAAGGTATCATGCTATAATTTGTCAGACAGGGTCTCGAGGCCGATTTTCG\n", "\n", "idx 14 locidx 746\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 26]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 26 0]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 26 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 26 0]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 26 0 0]\n", "68 C\n", "73 (68, 5, 5, 0)\n", "[26 0 0 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 26]\n", "TAGGTTGTGGGGCCATATCCTATTGCATCGGGTTGTCTGAGTAGCATACGGCATAGTAAAGCTGAAACCCGGGAAGGCGGTATCCA\n", "\n", "idx 14 locidx 747\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 22 0 0]\n", "GACTGTCTCGTTGCCTAGCAAAATGAGCGTTACCTGATATCCATAGCCATCTTGCGAATTCTACCTGTTTCGGGGTGTCGTACATC\n", "\n", "idx 14 locidx 748\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 23 0]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 23 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 23 0 0]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 23 0 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 23]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 23 0 0]\n", "TTGCACCGCCGGTCGTCTGGCTAGTAACTATACAAACAACGTCATCCAATCAGTTTTACTATTACGATAGTGGTATAGAGAATCTC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 14 locidx 749\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 22 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[22 0 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 1 21 0]\n", "GTTTCTGCGAGAAACAGCTCGTATCACGACCCTTTGGCTGCCGGTTCTTAGCATGCAATATGTGGGCATAACTTCTCCTACCTTCT\n", "\n", "idx 15 locidx 750\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 22]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 22 0]\n", "GCCATACACTAGTCCAAAAGGGTGTGAACCAGTGCCTATAAACAGCATGTCTGATATTTTGGAAGCTTTCTTAAAGGCAATAACTA\n", "\n", "idx 15 locidx 751\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[21 1 0 0]\n", "7 S\n", "12 (7, 5, 5, 0)\n", "[14 0 0 8]\n", "GCACCACSGAGATTGTGGATGGGCTATTGGCCAGTAATCTTATCACCCCAATTCAATGATAAACAAAATTTACCGCGTGCGCAGGA\n", "\n", "idx 15 locidx 752\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 18 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 18 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 18]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 18 0]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[18 0 0 0]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 18]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 18]\n", "AATGTCGTCCGACGAGGTGTCACACGGGTGTACGCGCCCGCCTCTGTTCACAGCGCGTGGTTGGACAGGGAAGCCTTTCCCCTCGC\n", "\n", "idx 15 locidx 753\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[12 0 0 0]\n", "63 G\n", "68 (63, 5, 5, 0)\n", "[ 0 0 0 12]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 12 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 12 0 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 12]\n", "AAGATACATTGAGCGTAAGAAACCTCAAGGCCATGGCCCCTCATAGTAGGCACTGCCCTCAGGGACGTTAGAACTCCGTAGAGGCT\n", "\n", "idx 15 locidx 754\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 15 0 0]\n", "19 T\n", "24 (19, 5, 5, 0)\n", "[ 0 0 15 0]\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 15 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 15 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 15 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[15 0 0 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 15 0 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[15 0 0 0]\n", "CCCATTACCAACGAGAGACTGCGCACTAAAGGTCTAAACAATCCTGCCACTGAGCGGCACATCGATGGGATGTAGTATTACCTTTT\n", "\n", "idx 15 locidx 755\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 17 0 0]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 17]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 17 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 17 0 0]\n", "AAGACACGGGACTTCCGCCCGGGAAAAGGGCAATCTTCTACAGTGAGCCGCTGCAGCAACTACTAGCGCGGCAAAAGACCGAGGAA\n", "\n", "idx 15 locidx 756\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 19 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 19 0 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[19 0 0 0]\n", "43 Y\n", "48 (43, 5, 5, 0)\n", "[ 7 0 12 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 19]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 19 0 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[19 0 0 0]\n", "TCGTTATTAAAACTAATACAAGACATGCCACGTAAAGCACCCTYCACCGGTCTGACGAGATTATGAAATTACACCTAGATCACCCG\n", "\n", "idx 15 locidx 757\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 18]\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 18]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 18 0 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 18 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[18 0 0 0]\n", "TGATTTCGATCGGCATCCACCCTTTAGAACCAGCAGAAGCCGGCCTACGCATTAGGGCAACAACACCGATGCAAAGTGCTGGCCGT\n", "\n", "idx 15 locidx 758\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 1 19 0 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GATGGCCGAGTAAAGAATGAGGTTCACAAATTTTATCACCACAAATCTTAAGAGAACATGGCATATCAAATTGAGGAGTCATCCTG-\n", "\n", "idx 15 locidx 759\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 22 0]\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 22 0 0]\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 22]\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 22]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 22]\n", "TAAAAGTACGAGTCGGCTATAAGGTTAAGCGTGAAAGATGGGGGTGACATCTTGTAAACGCCACGTAATGCTGAGGTCATTTAAAA\n", "\n", "idx 15 locidx 760\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 23 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 23 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 23]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 23 0]\n", "84 R\n", "89 (84, 5, 5, 0)\n", "[ 0 12 0 11]\n", "85 w\n", "90 (85, 5, 5, 0)\n", "[ 0 11 12 0]\n", "CCGCTCGGCCAATATCCTAATAATATTCATTAGATGCCACTAACTGTCCACCATCTTGTATTGGTATACTGCAAGTTGGAGGCARw\n", "\n", "idx 15 locidx 761\n", "51 G\n", "56 (51, 5, 5, 0)\n", "[ 0 0 0 15]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 15 0 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 15 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 15 0 0]\n", "TATCACCACGTATCTTTCTGAGTATAATCTCTTGCCATGGCCGAATCGAGTGGGTACGGGGAGAAACGCATGATCTTATTAATAGA\n", "\n", "idx 15 locidx 762\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 20 0 0]\n", "21 S\n", "26 (21, 5, 5, 0)\n", "[12 0 0 8]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 20 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 20]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 20]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 20 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 20 0 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 20 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[20 0 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 20 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AGGTCTATTTGATAAATAAAASAACGAGTTGGAGATTTTACTGCATACTAGTGATTTTCTGCGTCAATCTGGGTGCTTATAAAGCG\n", "\n", "idx 15 locidx 763\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[18 0 0 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 18 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[18 0 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 18 0 0]\n", "TCCGTTATACGACTTCGGTTCGAGGGCTGATCTCCAAGCAGGAAACATAGTGGAGCGCGAGGTATCATCCAAGGCTCAAGATCGCT\n", "\n", "idx 15 locidx 764\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 23]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 23 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GGGTCTATAACCCGTAGAGCGGTTCTCCGCGCTGTCTCAAAAACTTGCGTAGAGCCGGTCCTGATCTGTACGTAGCATTATGAATC\n", "\n", "idx 15 locidx 765\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 20 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 20 0 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 20 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[20 0 0 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[20 0 0 0]\n", "TCAATAACATGTAATCAGCTGATAATAACATAGAATACGGATTCCATCAGCACTTGAGAGCGCCCCGAAGATAGATAGAGCCCCAC\n", "\n", "idx 15 locidx 766\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 20 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[20 0 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 20 0]\n", "83 A\n", "88 (83, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GTCGAGTGCAGCGTTGGTTGAAGGCGCTACCCGAGTACAGGTTAATACGTTCTACGGCTTAAGCGTCCTTCCTATGTGTCTTCACA\n", "\n", "idx 15 locidx 767\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 19 0 0]\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 19]\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[19 0 0 0]\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 19 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[19 0 0 0]\n", "ACATGCCAAAAACCACAACTAGATACCGTTGAGTAGACCAGCGTGCAATCAGGTCCACGTCAAATAAGACGAAAATAGTCGGTATC\n", "\n", "idx 15 locidx 768\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 19]\n", "58 C\n", "63 (58, 5, 5, 0)\n", "[19 0 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "AAATACCCAGTCGCTTACCCTGTTGAGGTATGCAGGTTAAAAACACAGTGTGGGGGTGCATGACGAGCATATGGGGGGAGGGATAA\n", "\n", "idx 15 locidx 769\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 17 0]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 17]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 17]\n", "TTCAATGTGTTCCTTACCCCCGTCTTGTTTCTGTCTTAGGATACTCCATACCTCCCGCGCAATCCGTGTCGCACTGTCACACTGGG\n", "\n", "idx 15 locidx 770\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 17]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 17 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 17 0]\n", "60 C\n", "65 (60, 5, 5, 0)\n", "[17 0 0 0]\n", "GCGAGTCGCTGTTGTCCTTAAGCCCGATATAAGATAAGTGTCACGATACTCTTGTATACACGGACTGCTACGTGGACGGAATATCG\n", "\n", "idx 15 locidx 771\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 23]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 23 0]\n", "CCGCTTGAACAAACCTTTCTGATTGTTACTCCGGCTCATATTGTGCAAGGAGGGGCTATGTAGCGCTTGTACGGTTTAGGGGTGGT\n", "\n", "idx 15 locidx 772\n", "85 T\n", "89 (85, 5, 5, 1)\n", "[ 0 0 20 0]\n", "TTCGGCGGTGACATACAATCACTCCGCGACAGCAGGCAGTGGTGCCAAACCGAATCGGGGATGGCTCGGCGCTAACTACCTGA-GTG\n", "\n", "idx 15 locidx 773\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 21 0 0]\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[21 0 0 0]\n", "50 S\n", "55 (50, 5, 5, 0)\n", "[12 0 0 9]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 21 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[21 0 0 0]\n", "CCTCACTACTGCTTGACGGACCACAACAGAAACTTTATGGCAGCGCTCGCSAATAGGCGCAGGGCTCAAGATTCGGGTATGGTACC\n", "\n", "idx 15 locidx 774\n", "22 C\n", "27 (22, 5, 5, 0)\n", "[23 0 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 23 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 23 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[23 0 0 0]\n", "81 T\n", "86 (81, 5, 5, 0)\n", "[ 0 0 23 0]\n", "AGACCTCTGGCAGAGCCTCTGCCTAGGCGCCACGTCCATTAGTGACGGTTTTACACAGTTTAACGTATCAGGGGACTATGCTATCG\n", "\n", "idx 15 locidx 775\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 21 0 0]\n", "GGCGAACAACGTGCTCCCATTACACGGGATTAGCGGAGAACTTTCAGACCGTCCTATAAAAAGGCTCTTACGCGAATGTCGGATTT\n", "\n", "idx 15 locidx 776\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 18 1 0]\n", "50 G\n", "55 (50, 5, 5, 0)\n", "[ 0 0 0 19]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CGGAAATCAATTAGCTACTGATCTGACAGTTGCCCCCGTTCGTGTACGTAGTGTTTAGAGGGTGTAACTTATATTACCAGATTGTT\n", "\n", "idx 15 locidx 777\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 18 1 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 19 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TTTCTTCTCACAGTTAATACAGTCCTGTTGTTCAGGTCAGACTATCCGGGGCCGGGCTCACGGGTAAAACATTTCCGCGCACTTTG\n", "\n", "idx 15 locidx 778\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[21 0 0 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 21]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 21]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 21]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 21]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TTGTCGGCGTGGCGAAAGACGGGCCGAGTTTGGATTAACAGAGATCCGGACCATACGCAGAGGGTTGGCGCTCGTCCCATGGTTAT\n", "\n", "idx 15 locidx 779\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 23 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 23]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 23 0 0]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GCTTTGGCTCGGCATCTCTACCGGGACCATCAAAGTTGACTCACTTAAGGTTAACCCACGCTCTCCCTAGTGGAGAAGTACTAAAC\n", "\n", "idx 15 locidx 780\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 25 0 0]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 25 0 0]\n", "TTCAGTTTGGGTCCACTTTACTCTCTGGGCATTCTGTGACCTCCCAAGGAGCGTCATCGACCCCTTTGCGGGAGCTGCCGTTCCAG\n", "\n", "idx 15 locidx 781\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 16]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 16 0]\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 16 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 16]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 16]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[16 0 0 0]\n", "CACTAGGACCCCCATATAGGTTATAGGGTTGCTATGTATAAGCCGTCGGCAAATTCCGCGAACGCTGTCGCGTCCAGCTTAATCAC\n", "\n", "idx 15 locidx 782\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 21 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 21]\n", "ATCTGATAATATTGCGGATCTTACGCATGTTCACAGTGGACACTCATTTTGAATCAAACACGATATCGTTTGACGAACTACTATAA\n", "\n", "idx 15 locidx 783\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 18 0]\n", "30 G\n", "34 (30, 5, 5, 1)\n", "[ 0 0 0 18]\n", "41 A\n", "44 (41, 5, 5, 2)\n", "[ 0 18 0 0]\n", "48 -\n", "51 (48, 5, 5, 2)\n", "[18 0 0 0]\n", "52 G\n", "54 (52, 5, 5, 3)\n", "[ 0 0 0 18]\n", "60 T\n", "62 (60, 5, 5, 3)\n", "[ 0 0 18 0]\n", "CTCTGGAGGTACTTAATGACAGCCCG-GGGGTGC-CTTCGGACAAATT-CAGGTTCGACGTGTGTGGAACCGGAGCTGATAATTTC\n", "\n", "idx 15 locidx 784\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[25 0 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 25]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 25 0 0]\n", "TTTGATCAACATTGTACCTGCAAGTTCTGCCAAGCTACAAGACGGGGACTAGCCAGGATAGACTATTGAGAACTTATATAAGGGTG\n", "\n", "idx 15 locidx 785\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 20 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 20 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGCTATGTTTGTTGACGATGTAATTTATTCCGTAACCACTCCTGTAGGGACTCGATCGAGCAAGATAGCCTCTGCGAGAATTAGAA\n", "\n", "idx 15 locidx 786\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 24 0 0]\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[24 0 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 24 0 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 24 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 24 0]\n", "TGTACATGGGGCCAACCGGCCAAGCCTGTTCGAATCAGGCCCCTCGCAGGGTGAATTGGTCAAAGATCCCAATTGTTCCTGCGGTA\n", "\n", "idx 15 locidx 787\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 21 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CGTGGCGGGGTCCAGGGTACGCGTATCAGCGTTAATTGGAATTTCAAAGGGGCCCAAGCCGTCCATCACAGCATCTTCCGGGAGTA\n", "\n", "idx 15 locidx 788\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[18 0 0 0]\n", "15 S\n", "20 (15, 5, 5, 0)\n", "[10 0 0 8]\n", "21 R\n", "26 (21, 5, 5, 0)\n", "[ 0 10 0 8]\n", "24 G\n", "29 (24, 5, 5, 0)\n", "[ 0 0 0 18]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 18]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 18 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 18 0 0]\n", "53 r\n", "58 (53, 5, 5, 0)\n", "[ 0 8 0 10]\n", "GACAAGAGCGAACTASAAGCTRGAGGTGAGGTAACAGCGTTATTCCAGATATCrCCGCAAGCCGAGCAGTAGACGCCTGGCATATC\n", "\n", "idx 15 locidx 789\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 21]\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 21 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 21 0 0]\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CCTCGATTTGGCCATCTAGTCCCATGGGATACACGCCTCCTAACTTTAGGGAATGCCTGCACTAGCTGACCCTACTCGGATTGGCG\n", "\n", "idx 15 locidx 790\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 22]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 22 0 0]\n", "58 T\n", "61 (58, 5, 5, 2)\n", "[ 0 0 22 0]\n", "68 G\n", "71 (68, 5, 5, 2)\n", "[ 0 0 0 22]\n", "82 A\n", "84 (82, 5, 5, 3)\n", "[ 0 22 0 0]\n", "ATATTCGTGCTAATATAGTCGTCGCCAGCTCCAACCGATGTTGCTGATCGTAAAGA--TGACTCACGGGTTG-TCAGATATGAGCAGGT\n", "\n", "idx 15 locidx 791\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 22]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[22 0 0 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[22 0 0 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 22]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 22]\n", "ATGCATGACCAGAGTTGCACGACTGGTAACCCATCGGACATCACCAATTGAACGTTTCTAGCGAGAGCAAGCTCTCTGTGGACAGT\n", "\n", "idx 15 locidx 792\n", "0 G\n", "5 (0, 5, 5, 0)\n", "[ 1 0 0 20]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 21 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 21 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 21 0 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 21 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[21 0 0 0]\n", "GATGGGTCTAGGATGACCGTCGTGTACTAGCTAAGTTGTGGTAACTTTGTACTCAAAGAGGGCGACCGCTCACATCGTGTCTACTA\n", "\n", "idx 15 locidx 793\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 16 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[16 0 0 0]\n", "TGAATCCAGGTCACTCCCTTCGAGGCGAGCGTTAATGGTGGGCTCTAAGCTGGATCCTATGCCGGCTGTTGGGGCACGCCCATTCG\n", "\n", "idx 15 locidx 794\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 21 0 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 21]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 21 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 21 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 21 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "GAAACGTAATTATCGCTCGCCAGTCTTTATTCCTATATGGCAGGGGCGCAGCTATATGGTAGTACATCCTTTGACATAATTGTACC\n", "\n", "idx 15 locidx 795\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 22]\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 22 0]\n", "41 C\n", "46 (41, 5, 5, 0)\n", "[22 0 0 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 22 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[22 0 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "71 Y\n", "76 (71, 5, 5, 0)\n", "[11 0 10 1]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GGCGAGCGGCCAGGTCTGTTGAAGGACGTAGTTGCAGGGAACACAAGTTCCTTCTATAGCATTACTTCAGCYAAAAGTTGTAAGCT\n", "\n", "idx 15 locidx 796\n", "14 A\n", "19 (14, 5, 5, 0)\n", "[ 0 16 0 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 16]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 16]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 16 0]\n", "TCCGAGCCATCCTCAAACCCCACCCGACCTGTGCGAACGCTCTTAATTCGTGTCAGGGCTCACGCGAACGCAGATTTGAGATTCTG\n", "\n", "idx 15 locidx 797\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[23 0 0 0]\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 23 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 23 0]\n", "75 C\n", "80 (75, 5, 5, 0)\n", "[23 0 0 0]\n", "AACTTGACCAAGCCTGTACTTTATACTCCTGGGGGTAACCTCGTCCTGTAAGCTGAAGCAATGATATCAAACCTGCTAAATTGTAT\n", "\n", "idx 15 locidx 798\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[19 0 0 0]\n", "CGCATGTCTTCGTCATTTCCTGCTCATCGATCCTTTACAATGATTCACCGTGTTCTTGTTGTGGCACAATGTGCACTACCCGGCCA\n", "\n", "idx 15 locidx 799\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 17 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 17]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 17]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CTAACTCGACTCGAAGTTCCTGGCATTACGGCCGAAGTACCCCAAGCCCTTCCTTCTTGGATACTATGAGCGGATGTGTGTTGTCG\n", "\n", "idx 16 locidx 800\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[23 0 0 0]\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 23 0 0]\n", "7 A\n", "12 (7, 5, 5, 0)\n", "[ 0 23 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 23 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 23 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CACTCCAATGGTCAGTGTTGTAAGGAGTGAGCAAAATTAGTTCGTGGTTCTTCGGTACGCACTGCGAAATGGACGCATGTGACGGT\n", "\n", "idx 16 locidx 801\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 21]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 21 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 21]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[21 0 0 0]\n", "TAATTCCCGCCCTGCAGTCTACAAGCCGAATCCATGGTAAAGGACGGCTCTCCCGCACTCCGTTATGCGCCTGGTTGATCCAGGGC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 16 locidx 802\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[20 0 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[20 0 0 0]\n", "54 R\n", "59 (54, 5, 5, 0)\n", "[ 0 8 0 12]\n", "CCCGAATTCTACAGCCGGAAGGACCCTGGGGAGTGCCAGTACATCCCCCAGCTGRTACAATACATTCAATATCATCGGTTATTAAA\n", "\n", "NOT HERE\n", "idx 16 locidx 804\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 18 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 18 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "GCCGTTGTAGTGGAAATTTAGGGTCTTAGTGTCCAGAAAGCCGTACGGATGACTCCCGGACGCTATCCGGAGTCAGATTCCAACGT\n", "\n", "idx 16 locidx 805\n", "9 T\n", "14 (9, 5, 5, 0)\n", "[ 0 0 19 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 19]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 19]\n", "42 C\n", "47 (42, 5, 5, 0)\n", "[19 0 0 0]\n", "GACGGCAAATATGACTCGAGAGGCCCATGTTAAGTAAGTACTCGGTCAGATACGCGACAATCCTGCTGGTTCGTGACGCCCGTCCT\n", "\n", "idx 16 locidx 806\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 20 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 20 0]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[20 0 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 20 0]\n", "CTTAGAATCGTTACAGATCAGTTGGCGCGATAGCACGTCACACGTAGTAGGAACCTCGTCAAAATGCACAAATGGGCGGTCGTCTG\n", "\n", "idx 16 locidx 807\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 19 0]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[19 0 0 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[19 0 0 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[19 0 0 0]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TGTGTGCTGTTGCACTGCGATAACGTAACGCGGCGTGTGGTTTTACGACGCATTGTACCTAGTGGGTGCCCCCGGGCGCGCTTCAG\n", "\n", "idx 16 locidx 808\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 18]\n", "59 G\n", "64 (59, 5, 5, 0)\n", "[ 0 0 0 18]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 18]\n", "GTGCAGTGCTAGTAGCACGTTCGTCGGGCCCCCGCCGTGACCTGTTGATCAAAGAAGCCGAACGGACGGGAGGGATAGCAGCACCG\n", "\n", "NOT HERE\n", "idx 16 locidx 810\n", "24 A\n", "29 (24, 5, 5, 0)\n", "[ 0 20 0 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 20 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 20 0]\n", "GCCTGTCAGCCTTCTAAACAGGCAACGCGAAAGGGTGAATTACGTGGAGTAGAGGGCCATACTCAGTTGTCGAAGAATACTCTTTG\n", "\n", "idx 16 locidx 811\n", "37 Y\n", "42 (37, 5, 5, 0)\n", "[11 0 13 0]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 24 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 24 0 0]\n", "TGGAGTACATAAGAGATTTAGGGTTTTGTAGATCTTTYTTCCGAGGAGGGCAGATCCGACGAACGCCTACACCCGCGCTCTATAGG\n", "\n", "idx 16 locidx 812\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[19 0 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TACCCGGGGGCTCTTTGTCCCTCACCGAGAGCTATGTCAACAGAATTACTTGGGGCTTCTCCGACGGAGATTGGATATCCATATCA\n", "\n", "idx 16 locidx 813\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 21 0]\n", "75 G\n", "80 (75, 5, 5, 0)\n", "[ 0 0 0 21]\n", "CATGGGGACTTGCTTCGGAGGGTGGGTACATTCCGGCTGCTCCGGAGGCCCCTATTCCGCGTCGTGCGGGTGTACGTAGCGACC-TA\n", "\n", "idx 16 locidx 814\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 20 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 20 0]\n", "49 A\n", "54 (49, 5, 5, 0)\n", "[ 0 20 0 0]\n", "68 S\n", "73 (68, 5, 5, 0)\n", "[11 0 0 9]\n", "AAAGCAGCACTATTCTATTAGGTCGATGGATGGTTTGCGGACATTGTTTACTTCCTGATATCTTGATGSTTGACTCGGTATATCTT\n", "\n", "idx 16 locidx 815\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 17 0 0]\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 17 0 0]\n", "CAGCATCATGGCGCGAACAACGTGGGAGTGACGTGGGCAGACGACCTCACTAGCGGAGACTATGGTAGCTCCAGTGAGGATGGCAA\n", "\n", "idx 16 locidx 816\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 24 0]\n", "28 C\n", "33 (28, 5, 5, 0)\n", "[24 0 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 24 0]\n", "59 M\n", "64 (59, 5, 5, 0)\n", "[12 12 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 24]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 24 0 0]\n", "CAGTTAGGCAGTCGTAAGTTCAAGTAGCCGGGCAGGTCAATGCCAGGCATCAATATGTTMAATAGGTTACGCCATCATTAAAAGTC\n", "\n", "idx 16 locidx 817\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 23 0 0]\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 23 0 0]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[23 0 0 0]\n", "69 S\n", "74 (69, 5, 5, 0)\n", "[12 0 0 11]\n", "ACCATGAATACCGGTTCGTGCTGTAACGTGCCTGCATGGGATTGCTCACATTTGCTTGCTTGCTCGAAASTGGGTAAAGTTAGCGA\n", "\n", "idx 16 locidx 818\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 23]\n", "CAGTAAGCGGAACACCCACAATCGAAACAATGAGCCAAGCAATCACGATCACGCGTTGCGACAGCTTGTCTTAATAAATATAGCCC\n", "\n", "idx 16 locidx 819\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 23 0 0]\n", "AACGCCGGCGGTGAAGCCACTCAGGTAACCATCTGCGAGTTATTAACTTTATTCGCCCACGCCGCCTTGCTGGTCCACGTCCGCCC\n", "\n", "idx 16 locidx 820\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 14]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 14]\n", "51 M\n", "56 (51, 5, 5, 0)\n", "[6 8 0 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 14 0 0]\n", "73 A\n", "78 (73, 5, 5, 0)\n", "[ 0 14 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[14 0 0 0]\n", "79 T\n", "84 (79, 5, 5, 0)\n", "[ 0 0 14 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[14 0 0 0]\n", "AAGCATAGACCTCAGTAGTAAGCGGCTGCTTGGGTACGTTCCTCGTGTCTCMTTCAACTTTCCACTCAAGCACATTCTATAGCTCT\n", "\n", "idx 16 locidx 821\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 21 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[21 0 0 0]\n", "GGGTGACGTTCAAAGGCGCGACCACTGATAGTTCCCCCGTCCTCTCTAGCCCGCAGGTGCCAATCTTGGACATACGATTTGAGGGA\n", "\n", "idx 16 locidx 822\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 22 0]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[22 0 0 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 22 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 22 0]\n", "45 A\n", "50 (45, 5, 5, 0)\n", "[ 0 22 0 0]\n", "58 T\n", "63 (58, 5, 5, 0)\n", "[ 0 0 22 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[22 0 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 22 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[22 0 0 0]\n", "TTGTCAACTGAGGCGCCACTGTTAACTACCTAGCCGCCAAAAATGAGAGGCTTATTAGTCGCCGGGAAGCCTTAGGAGGCTCCCTT\n", "\n", "idx 16 locidx 823\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 19]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[19 0 0 0]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[19 0 0 0]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 19]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 19 0 0]\n", "GACTGCGAATGACGGTGGCTAGTACTCGAGGAAGGGTCGCACCGCAGTAAGCTAATCTGACCCTCTGGAGCGCGTACCGTACGAAG\n", "\n", "idx 16 locidx 824\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 18 0]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[18 0 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 18 0]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 18 0 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 18 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[18 0 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[18 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 18]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CAAGAGCTCACAACCAGGGGAGTAAAAATTTCTAAGATATTGAGCTAACAATTGTACCAAAGGGGCGTCGATCTTCTCGCCACGGC\n", "\n", "idx 16 locidx 825\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[21 0 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[21 0 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[21 0 0 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 21 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 21 0]\n", "AGGATTGCTACAGAACCAGACTTGGGCATGTAGAAATTTTAATCCCGCACTATCTCCCGACCATAGGCGAAGGATCATTATCTCAA\n", "\n", "idx 16 locidx 826\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[23 0 0 0]\n", "18 C\n", "23 (18, 5, 5, 0)\n", "[23 0 0 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 23]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 23]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 23 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 23]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 23]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 23]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 23 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TGCCTCGACTGTGCGCGTCCGCTGAATAAGGGTTGCAGCTCTCGACTAGAAGATAGGTGCTCTCTTCGCGCCAGGATGGAACCAGC\n", "\n", "idx 16 locidx 827\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 17 0 0]\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 17]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 17]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 17 0 0]\n", "TCCAGATTGAACACTTTACTCAATTCTGGCTAGGGGAGCGGGGTTCCACTCCATGACCCCCTCAATTAGAGTCATTTTGTTTACTC\n", "\n", "idx 16 locidx 828\n", "44 T\n", "49 (44, 5, 5, 0)\n", "[ 0 0 22 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 22 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 22 0 0]\n", "74 T\n", "79 (74, 5, 5, 0)\n", "[ 0 0 22 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[22 0 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CGGCAACGAGCAACTGATTGCAGTACATATGTGGCGTAACAACTTCGCTAGCCGCTGCGTCGAATACGAACGATTTACCTCGCCGG\n", "\n", "idx 16 locidx 829\n", "21 A\n", "26 (21, 5, 5, 0)\n", "[ 0 18 0 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 18]\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 18 0]\n", "70 K\n", "75 (70, 5, 5, 0)\n", "[ 0 0 8 10]\n", "74 C\n", "79 (74, 5, 5, 0)\n", "[18 0 0 0]\n", "CCGGCGTTTGATACACACGTCAGAGATTCGAATTTCGGGCGGTGCGAATTTTTCGGTTGCTTGAATCCCCKGTTCAAACTAGTGCC\n", "\n", "idx 16 locidx 830\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[22 0 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GCGGCCTCTTAATTGTTTACCAGCTGCTTAGTAGAAATACTATTCACTTAAAACCCTGAACCCCCCCGCGAGAAGGAGGCGTAAGA\n", "\n", "idx 16 locidx 831\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 20 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 20]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 20 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[20 0 0 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 20 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGACGGATAGGGGCACGCTGCCTTTAACAGGCCCGTCCTGTGACGATACGAACAAGATCAAGACGCGAGATGTTTATATCTTGTAC\n", "\n", "idx 16 locidx 832\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[18 0 0 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 18]\n", "60 A\n", "65 (60, 5, 5, 0)\n", "[ 0 18 0 0]\n", "CGCTGCTAGTACCTGATCAACGAACGGGCCTGGGTTTGGTTATGTCAGTCGCAGTGGTTTAGACGTAGGGTTTTTCGAAAAGATCT\n", "\n", "idx 16 locidx 833\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[19 0 0 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 19 0]\n", "17 G\n", "22 (17, 5, 5, 0)\n", "[ 0 0 0 19]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 19]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GGCACCTTTTCTACCATGGGTTCGGGTTCCTGCTCCGCCGTGTGCCATTTGTGAGCCCTGGGCGTGTAGGCGTCTCCGTGCGTACA\n", "\n", "idx 16 locidx 834\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 22]\n", "38 C\n", "43 (38, 5, 5, 0)\n", "[22 0 0 0]\n", "51 A\n", "56 (51, 5, 5, 0)\n", "[ 0 22 0 0]\n", "79 G\n", "84 (79, 5, 5, 0)\n", "[ 0 0 0 22]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 22 0 0]\n", "TATGTACGTGTCGGAGGCACGTGTGTGGGATGGGTCGTCAGGACTAGATGGACCGCAAGCGGGGGAGGGGATTCCCCCCGGTCAGA\n", "\n", "idx 16 locidx 835\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[20 0 1 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 21 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 21 0]\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CAAAGCCAGGTTTGCCCGGCTACGTGTGAGTAGAGTGCACCGTGGGTGCACGCTCTGCCCACTAAGCATCCCCCTTAATAGCTACA\n", "\n", "idx 16 locidx 836\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 22]\n", "31 C\n", "36 (31, 5, 5, 0)\n", "[22 0 0 0]\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 22 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[22 0 0 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 22 0]\n", "CGACGAAGAACCGAACCCAAGCAGCTACGCACTCGGTATGTTTTACACTCGACCTTCATAGTACTGTGCTTCGTAAGGGAAACCCA\n", "\n", "NOT HERE\n", "idx 16 locidx 838\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[18 0 0 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 18 0 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 18 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 18 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 18]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[18 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[18 0 0 0]\n", "GTCACTTTTCACGATACACTATTGTTATTACTGTGAGACACAAAGCTAATTCATCACTTCACGGATACCGCGTCCTCCTATAACGC\n", "\n", "idx 16 locidx 839\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[19 0 0 0]\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 19 0]\n", "17 C\n", "22 (17, 5, 5, 0)\n", "[19 0 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 19 0 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[19 0 0 0]\n", "70 A\n", "75 (70, 5, 5, 0)\n", "[ 0 19 0 0]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 19 0]\n", "GACATCTTCTCTGCGTGCTCGATTAATATTCTCGCCCGCTCGGGCTGCCGCGCACAGCATATGATACTATACAACTCGGGGTTGTT\n", "\n", "idx 16 locidx 840\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 21]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 21 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TCTAACGTAGAAACTTCCGTGCTTTAGCCGTTAGCGCCACTTTGGTCCATGATTCTGATCCCTTACTATAGTGAACGCCTGTGGAT\n", "\n", "idx 16 locidx 841\n", "23 G\n", "28 (23, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TCACCTAAACCTGTGCCTTCGTAGGTTCATCTGTTCCACGATGGAGGTTGCGTGCCATCCTCGAGTCCTTAATCGGCTCTTGCCGC\n", "\n", "idx 16 locidx 842\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[17 0 0 0]\n", "4 G\n", "9 (4, 5, 5, 0)\n", "[ 0 0 0 17]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 17 0 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 17]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 17 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 17]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 17 0 0]\n", "ATCCGTGACTAACGGTTTAGGTCTGGCATCGCATTTGACACTATCTAGAAAATAGAACCAGTCAGGAGAATCTAGCAAAAAGATCC\n", "\n", "idx 16 locidx 843\n", "2 Y\n", "7 (2, 5, 5, 0)\n", "[ 8 0 10 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 18 0 0]\n", "ATYTCCGCCGAATTGACCCCGATTGGCGTCAAGGGAATAGATATGAGGAACTGAGCCAATCCACACCGTGTGTAAGCTAAACTTTT\n", "\n", "idx 16 locidx 844\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[22 0 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 22]\n", "53 G\n", "58 (53, 5, 5, 0)\n", "[ 0 0 0 22]\n", "CATCTCATTACCTCAGGTGTTGACGGCGCCAGGTCACAATCTTGAGGCAAGGGGAGTGGGCATCCCACAACCGAGTGTACTTGGAT\n", "\n", "idx 16 locidx 845\n", "3 C\n", "8 (3, 5, 5, 0)\n", "[22 0 0 0]\n", "72 M\n", "77 (72, 5, 5, 0)\n", "[11 11 0 0]\n", "79 C\n", "84 (79, 5, 5, 0)\n", "[22 0 0 0]\n", "GTGCCGTCAGGCTCCGGTGCAGCAGGTGCGTGATTACACTGGAAGCTACACTGAAGTGAAGTGCGGGACGAGMATCGCGCAGCAAA\n", "\n", "idx 16 locidx 846\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 1 0 20 0]\n", "33 M\n", "38 (33, 5, 5, 0)\n", "[10 11 0 0]\n", "43 T\n", "48 (43, 5, 5, 0)\n", "[ 0 0 21 0]\n", "TTGCCAGAAAGAAGGGCTGACGACTCCATTATAMTCACCCTCTTACCATTACCTGTCGATAGGTGTAAGCTAGAGGGCCTCGGGAG\n", "\n", "idx 16 locidx 847\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[18 0 0 0]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 18 0]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[18 0 0 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 18 0 0]\n", "63 C\n", "68 (63, 5, 5, 0)\n", "[18 0 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 18 0 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "AGAAATCTACAGAAGCTGTGCCGTGGACCTGCCGAGGTTTCCCAATCTCACTAAAGGGGGGAGCCTTTAGGCCTATAAATTAGGTT\n", "\n", "idx 16 locidx 848\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 15]\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 15 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 15 0 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 15 0]\n", "GATACTGCCTAATTGCCCTACTCAGATACCGCATATGTTTTCTCGGTACAACATGTTCGTTTGCTTATGACGCTATGTACTAACAG\n", "\n", "idx 16 locidx 849\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 18 0 0]\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 18 0 0]\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 18 0 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 18 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 18]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 18 0 0]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[18 0 0 0]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 18]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 18 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 18]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 18]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 18 0 0]\n", "TTCCATGATAGTAAAAGTTGACATGGAGCCTTGGAGATGTTACTCACACGGGTTACTATCGGATTGGCGTATTAAGGACTGAGCAA\n", "\n", "idx 17 locidx 850\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 17 0]\n", "8 T\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "13 (8, 5, 5, 0)\n", "[ 0 0 17 0]\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 17 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 17 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 17 0 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 17 0 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[17 0 0 0]\n", "TAAAGCTCTCTACATAGTAATTCGAACGCGACGGTCTTCGGCAGCTCGCGGTCCGATCCCCACTTAGGCCGAATCGCCATCCGTTT\n", "\n", "idx 17 locidx 851\n", "44 C\n", "49 (44, 5, 5, 0)\n", "[18 0 0 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 18 0]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CCAGAGACTACCACTCTGATTCAGTTTATGATGTACTCGACCCTCTCTCTTTTTTTAGATGTGGTAAGATTTTATAAAAGTTAACT\n", "\n", "idx 17 locidx 852\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 25]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 25]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 25 0]\n", "GGGAGCCGGGGGCACGACGCGGATCTCCGTACAGTAGATCACGATCTCTACGAAATATGAAGAACTTGAGACCTAACCAACCCATT\n", "\n", "idx 17 locidx 853\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[22 0 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 22 0 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 1 0 0 21]\n", "GTGCTCTAGCACGAGGACATCCGAAGTTTCGATTAGCGTTGATGTCTAAACCTGGAACAACGCAAGTTGGTGTGGCTTCGAACCAG\n", "\n", "idx 17 locidx 854\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[17 0 0 0]\n", "ATAGGAGACGAATTAAATCTACATCAATCATTAGGCGTGGGATTGCTTCAAAGTCTGTTCCGGGAGCTGCCAGGCCCCAGTGCTAG\n", "\n", "idx 17 locidx 855\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 1 0 19]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 20]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 20]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 20 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 20]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GGGAGACGCTGGCCATCGGCCGCGCTGCCGAGGAACTTCTACATTGTCCGCTTCCCAAAAATATAGGCGATTACCCAGTTAGTGGG\n", "\n", "idx 17 locidx 856\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 13 0]\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 13]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 13]\n", "72 C\n", "77 (72, 5, 5, 0)\n", "[13 0 0 0]\n", "TGGTTCATCACAAATCGATGCCCGGTCGTCGCCCTTGTCGCTAATGGAGCGCGACAATTCTAGCAGGGTTCGCCTTATTCACGCCA\n", "\n", "idx 17 locidx 857\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 19 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 19 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 19]\n", "ACCCTAGACGGAAATTGTAGTTTCATGACGCAACGCCGTCTCTCACCTCCAAGGCTATGAAGTCGCTTCAAGTGGCAGTGACACGA\n", "\n", "idx 17 locidx 858\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 23 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 23]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 23]\n", "40 M\n", "45 (40, 5, 5, 0)\n", "[10 13 0 0]\n", "CTGCTACAGATAGGTTTCAGCATTTAAGGAAGTGGTGTGGMGCTCCCACATTTTCTGTGCAACACGAATTGTAAGTCGGCTAGCTC\n", "\n", "NOT HERE\n", "idx 17 locidx 860\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 17 0 0]\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[17 0 0 0]\n", "24 R\n", "29 (24, 5, 5, 0)\n", "[0 9 0 8]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 17 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 17]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[17 0 0 0]\n", "ACCGCCGGGACAAGCTTTCGTTAARGGTGGCCACATGACCAGGTTAAGGTTGGCTTGTTTAGTTAACCTTTGCAACCGGCGTAAAC\n", "\n", "idx 17 locidx 861\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 17]\n", "33 G\n", "38 (33, 5, 5, 0)\n", "[ 0 0 0 17]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 17]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 17 0 0]\n", "42 C\n", "47 (42, 5, 5, 0)\n", "[17 0 0 0]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 17 0]\n", "AAGGTGACGTGCCATAGAGAGACGTGCACAGTGGGGAGAAGTCTCACTATGGCAGAGGGATGGAGAAAGCCCGAGGGGTAGGTCTA\n", "\n", "idx 17 locidx 862\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 20 0]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 1 19 0 0]\n", "55 A\n", "60 (55, 5, 5, 0)\n", "[ 0 20 0 0]\n", "GCGCAGCCGCGTAGAAACCGACACAACGGATCCTTCAAGCAACGAAGCGACGGCCAGATTCTTAGTTCGCGATAATCTCAGTCAAT\n", "\n", "idx 17 locidx 863\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 23]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 23 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 23]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[23 0 0 0]\n", "GATAGGCTTACGCTTGACACGAAATGATGTGGTTATCTCGGAGTCCAGACCGCCTGATAACCTAGGCAATGCATCTCGCATGTAGA\n", "\n", "idx 17 locidx 864\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 25 0 0]\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 25 0]\n", "40 G\n", "45 (40, 5, 5, 0)\n", "[ 0 0 0 25]\n", "82 T\n", "87 (82, 5, 5, 0)\n", "[ 0 0 25 0]\n", "TATCCAATCCCGTTTTTACGCAGCGCGCCAGACCTTTGGTGGTCCTCCGTAGATAGCGGACCGGAAGGAATAAAGGCTACGTTGCA\n", "\n", "idx 17 locidx 865\n", "27 G\n", "32 (27, 5, 5, 0)\n", "[ 0 0 0 18]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[18 0 0 0]\n", "45 W\n", "50 (45, 5, 5, 0)\n", "[0 9 9 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 17 1]\n", "60 Y\n", "65 (60, 5, 5, 0)\n", "[9 0 9 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 18 0]\n", "77 A\n", "82 (77, 5, 5, 0)\n", "[ 0 18 0 0]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CCGGACACACGGTACGTCGAGGCGCCAGCCAAGTGCTGAGTATCGWTGCGCCGTTATCTAYTATGGGCACCCGTCAAATCGTTGTT\n", "\n", "idx 17 locidx 866\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 21 0 0]\n", "21 G\n", "26 (21, 5, 5, 0)\n", "[ 0 0 0 21]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 21 0]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 21 0]\n", "38 G\n", "43 (38, 5, 5, 0)\n", "[ 0 0 0 21]\n", "52 T\n", "57 (52, 5, 5, 0)\n", "[ 0 0 21 0]\n", "59 A\n", "64 (59, 5, 5, 0)\n", "[ 0 21 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 21]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 21]\n", "TTTGGATAATCGCATGAAAATGTCGGCCTTCCATTTTGGGGCTCATCGATCTTCAAATGACGGAGGCTTCGACCAGACAAGCTGAG\n", "\n", "idx 17 locidx 867\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 18 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 18]\n", "TGTGTATTAGCATTGGCCACCGCATGTCCTCGCACAGGGTCCCGGAGAAGCGGTCGTGATGTATGCGTACAGACGTACTCCAATTC\n", "\n", "idx 17 locidx 868\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 21 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 21 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[21 0 0 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[21 0 0 0]\n", "ATTTGAGAGATCTCTTTACGCGCTCTGCAAATGTTTCTCTGCTAGTTAAAGGAACGCCGTAGTCGATATTCCCGTGCCCACGTTCG\n", "\n", "idx 17 locidx 869\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 22 0 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GATAGGTAATCATTTGCAAGGGGCCGTCGCTGACCCTTATATGAACAATCCAGTCTATAGCGGCCACTGACCGCCGTAACAAGCAT\n", "\n", "idx 17 locidx 870\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 24]\n", "19 A\n", "24 (19, 5, 5, 0)\n", "[ 0 24 0 0]\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[24 0 0 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 24 0 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[24 0 0 0]\n", "CGTGGCGTCATTCTAGGTAAAACTCCTGCTGGATACCCGTTAGCCGAGCGCACCTTTTAGGTTACGCACGCTGTCTAACGGACATA\n", "\n", "idx 17 locidx 871\n", "27 C\n", "32 (27, 5, 5, 0)\n", "[22 0 0 0]\n", "ATTATGGCCACAGATTCATCAAAGACGCCTTGGCACTTGGATGACCGGGCCCGGCTCGCCGTGTGATGCGGTGCATTGCCCTGCCT\n", "\n", "idx 17 locidx 872\n", "11 A\n", "16 (11, 5, 5, 0)\n", "[ 0 20 0 0]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 20 0]\n", "38 G\n", "43 (38, 5, 5, 0)\n", "[ 0 0 0 20]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 20 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 20]\n", "CTCACCCATTGAAGAGGTTTAGCAACGGCATTGTACGCGCATACGGTGACGTAATTCAGAGTTAATTCCGCGTGCGACTCCTAGCT\n", "\n", "idx 17 locidx 873\n", "4 C\n", "9 (4, 5, 5, 0)\n", "[19 0 0 0]\n", "TAGTCATAACGATAACCGGACATAACCTCTAGCGACAATTGAGTTGACACATGTGTCCCCTTAGAGAGTTAACGCATAGCGGCCGC\n", "\n", "idx 17 locidx 874\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 22]\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 22 0 0]\n", "16 G\n", "21 (16, 5, 5, 0)\n", "[ 0 0 0 22]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 22 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[22 0 0 0]\n", "CCGAACCAGACCATAAGTTGATCCTAAGGGTAACACCTTGATTGGAATGTGAGTACCACTTTAGGTTCTAGGACGTGGTGCTGGCG\n", "\n", "idx 17 locidx 875\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[20 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 20 0]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 20 0 0]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[20 0 0 0]\n", "ACTCACGGCTAGGGTTCCCACGTGATAATAGCTCCGCCCCCTAGCCTCAGCAGTTTGACGGACCTTTAACCAGCTGTCCAAAGTAC\n", "\n", "idx 17 locidx 876\n", "14 G\n", "19 (14, 5, 5, 0)\n", "[ 0 0 0 20]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 20 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CTCTAGCAATCTAAGGAGGCTCGTGTTCTGCCCCGGCGATTGTCTTTTGTCCGTTGTACCCCCCTAAATCGACGTTGAAATAGAAA\n", "\n", "NOT HERE\n", "idx 17 locidx 878\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[20 0 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 20 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TCATGAGCCCTCGAGTTACTCTGTAGAAAAAAAGCCTAACCGACTTTAGTACCCGATCTCTCGCCATACCTGACATGTCCCTTCTG\n", "\n", "idx 17 locidx 879\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 19 0 0]\n", "30 C\n", "35 (30, 5, 5, 0)\n", "[19 0 0 0]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 19 0]\n", "GAAGGGGGGACGCCGTAGGGCTAACCAACGCTTTTTAAGCGCCTCAAGATTAATAAACCACATCTTCTGAGTGTTTAAGCCGACGA\n", "\n", "idx 17 locidx 880\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 19 0 0]\n", "CTGCCAGTCAGTCCCGAATAGAGCGAAAGTAAAGAGCGTGATGCTCCCGCATCCGTGCCGGATCCTCTCACGACAATGTGGTCGCC\n", "\n", "idx 17 locidx 881\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[19 0 0 0]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 19 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[19 0 0 0]\n", "76 C\n", "81 (76, 5, 5, 0)\n", "[19 0 0 0]\n", "ATCCGACGCCAGGGACCCCAATTGTCGCAGGAGATGACTCGGTAAATTTCTCTCTTCTACAAGGTGGTGCCTTCAGCATCTAGCCC\n", "\n", "idx 17 locidx 882\n", "25 A\n", "30 (25, 5, 5, 0)\n", "[ 0 17 0 0]\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 17 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 17]\n", "71 T\n", "76 (71, 5, 5, 0)\n", "[ 0 0 17 0]\n", "ACATGACAAGCGACGTTACTGCCCCATGTTGGTAGGCCAATACGGGCCATTGAACCACGTTGTTTCCGCAATCTCGGCGGCCACAT\n", "\n", "idx 17 locidx 883\n", "1 C\n", "6 (1, 5, 5, 0)\n", "[21 0 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 21 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 21]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[21 0 0 0]\n", "CCCTGTTGTAAATTGCCCGAATACAACCAACAGGATAGGGACTGAGCTCAACAGCGGCATGAGGTCTGCTACCAAATTCCTTACGA\n", "\n", "idx 17 locidx 884\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[20 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AAACAGTAGCGGCCCATCTTTTTAAACTTTTACCAAGTCTGTGCAGCCGACCGATCTGAAGAGGTTTACACCGATATGAGGATGGG\n", "\n", "idx 17 locidx 885\n", "28 Y\n", "33 (28, 5, 5, 0)\n", "[11 0 10 0]\n", "36 C\n", "41 (36, 5, 5, 0)\n", "[21 0 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 21 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 21 0 0]\n", "75 A\n", "80 (75, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TCGCATTCCGTCAAGGCATATGTGCGCAYGCTGGCGCGGTAATTATTCTTACCGTTCCTACCTACTATTACTCAAACTGCCCCTAC\n", "\n", "idx 17 locidx 886\n", "39 G\n", "44 (39, 5, 5, 0)\n", "[ 0 0 0 23]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 23 0 0]\n", "ACGCTTGATTAGTCTTCTACGCTTGTTAGGTTACTCGCAGAATTCTTTAGTCTTGGATGGTGAATGTATATCGGAAATGGTCGAGG\n", "\n", "idx 17 locidx 887\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[23 0 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 23]\n", "57 A\n", "62 (57, 5, 5, 0)\n", "[ 0 23 0 0]\n", "58 A\n", "63 (58, 5, 5, 0)\n", "[ 0 23 0 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 23 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CCTGCTCTTAGGATAGGTCCACACATGGCCCATCGAATACGCCCGGCTCCATGATGGAAAATTAAGGATATGTTAAATGGAAATTG\n", "\n", "idx 17 locidx 888\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 23 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 23]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 23 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 23 0 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 23 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 23 0]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 23 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[23 0 0 0]\n", "CGGGGTCCTTAGAGTCGTTCCTAGTTGGCCTCACTCCGGACAAACGGAGGCTCGTTTACTTTTAGTGCAATCTGTCATAACGCTGC\n", "\n", "idx 17 locidx 889\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 23 0]\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 23]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 23]\n", "32 C\n", "37 (32, 5, 5, 0)\n", "[23 0 0 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 23 0]\n", "50 A\n", "55 (50, 5, 5, 0)\n", "[ 0 23 0 0]\n", "AGCATGCGACGAGAGCCCCGGGAGATATCTGCCCTAAGTCTTCACACCCTAGGGGTACCGCGTCGCATTTGGTGCTATGCGCACAT\n", "\n", "idx 17 locidx 890\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 21 0 0]\n", "28 A\n", "33 (28, 5, 5, 0)\n", "[ 0 21 0 0]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 21]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 21 0 0]\n", "53 A\n", "58 (53, 5, 5, 0)\n", "[ 0 21 0 0]\n", "57 T\n", "62 (57, 5, 5, 0)\n", "[ 0 0 21 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 21]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 21]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[21 0 0 0]\n", "85 G\n", "90 (85, 5, 5, 0)\n", "[ 0 0 0 21]\n", "ACCGTTTCTCCGTGAATAGCAGTGTGATAACGGCTACGGATAGAATGTCGTGAACCATCACACTGCGGCCCGTCGAGGTCGGCTCG\n", "\n", "idx 17 locidx 891\n", "18 T\n", "23 (18, 5, 5, 0)\n", "[ 0 0 23 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 23]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 23 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[23 0 0 0]\n", "66 T\n", "71 (66, 5, 5, 0)\n", "[ 0 0 23 0]\n", "TACGTTGCTTAATGAGCTTCGGTGGGGCTTACATCAGTTCATGACTAACCCCTTATGATGTGGAACTACGAACCACGATCGACCTT\n", "\n", "idx 17 locidx 892\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 19]\n", "22 T\n", "27 (22, 5, 5, 0)\n", "[ 0 0 19 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 19 0]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[19 0 0 0]\n", "ACGCGATAGCCGGTAATAAGGGTCAACGCACTAGACTCATGATCTACGACGATGACATTCTTCTTAGTATCCCTTGGGACGACGCC\n", "\n", "idx 17 locidx 893\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TTGGAGCAGCTACGGATAGACAAAGTTATCCCAACGTTACCTGGGATGTGGTACCTGGATTATGAACTCTGAATATGCGCCCGCTG\n", "\n", "idx 17 locidx 894\n", "25 Y\n", "30 (25, 5, 5, 0)\n", "[6 0 9 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 15 0]\n", "CGTTACTACTTTAGGCAACTACCATYCGGTATTAACACAGCCGTGCCGTCATCTTAACATAAGTATCATCGTAGTAGCAAGGTCAA\n", "\n", "idx 17 locidx 895\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 18]\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[17 0 0 1]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 17 0 1]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 18]\n", "CTTTTGCGAGGGCCCGGGGCCTCCCGCGATTAATTATGCGAACATTACAAACGGTAGCCTGAAACAGCTTGCATCTCATGGTCGTG\n", "\n", "idx 17 locidx 896\n", "11 C\n", "16 (11, 5, 5, 0)\n", "[19 0 0 0]\n", "35 C\n", "40 (35, 5, 5, 0)\n", "[19 0 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 19 0]\n", "ATCGATGGCATCCTCTTTAACTAGGTAGTGCGAATCCCTCAAATTGGCAATCCGGTTCAGTTTTATGTCGTGAACTCTTAATAAGG\n", "\n", "idx 17 locidx 897\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 20 0]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TCTCAGTCGGTCCAGGATCTCATTTAGTTCACTCTTCTTTGGTCGTAAACTGATCATCAGGGCTTTGCCATAGATTTCCACATCGC\n", "\n", "idx 17 locidx 898\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 12 0]\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 12 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 12 0]\n", "TTTTAGCGGGAGGAACTTGTATCTTTTTGGTCGCTTTACTTCGCACCGAGCGGTATATGAGTTATACCAGTCCTGCTATGAGCTGT\n", "\n", "idx 17 locidx 899\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 23 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 23 0]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TTTGTCTACACGCACACGCACGATCGGCTCACGTGGCACCGCATGCTAGTTACTTGGACCGAGTGATACTGGGCCATCCTCCCGTT\n", "\n", "idx 18 locidx 900\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 16 0]\n", "28 T\n", "33 (28, 5, 5, 0)\n", "[ 0 0 16 0]\n", "44 A\n", "49 (44, 5, 5, 0)\n", "[ 0 16 0 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[16 0 0 0]\n", "69 C\n", "74 (69, 5, 5, 0)\n", "[16 0 0 0]\n", "AGGAGGATTTACACCCGTTTACGCCTAGTGTGTCTATTTGCTATATGGACAGGCCGCTCTGAGCTAAGCCTCGTTAAGGTCCGGTA\n", "\n", "idx 18 locidx 901\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 20]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 20 0 0]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 20]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 20 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 20]\n", "86 A\n", "90 (86, 5, 5, 1)\n", "[ 0 20 0 0]\n", "AAGAGAAAGGCTTCCCTACACGTACAAGATCGGAAGCCTCTTGAGAGTTAGCTGCCCCAAGTTAGTGGCCGGCTCAGTTAGGGC-CA\n", "\n", "idx 18 locidx 902\n", "26 T\n", "31 (26, 5, 5, 0)\n", "[ 0 0 20 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 20 0 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[20 0 0 0]\n", "62 G\n", "67 (62, 5, 5, 0)\n", "[ 0 0 0 20]\n", "GCCATACTGCCTCTTAATGTTATCCGTTCGCTGTATTGTGGGAGTTACATCCCGGTCGTGTAGACCCTGCGGCTAAAAACAACCAG\n", "\n", "idx 18 locidx 903\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 23 0]\n", "45 T\n", "50 (45, 5, 5, 0)\n", "[ 0 0 23 0]\n", "63 T\n", "68 (63, 5, 5, 0)\n", "[ 0 0 23 0]\n", "69 G\n", "74 (69, 5, 5, 0)\n", "[ 0 0 0 23]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 23 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 23 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[23 0 0 0]\n", "ATTTAGGGAAGTATGAATAAATAAGTACAAGGACGATGCTCCCACTCTGTCATACTTGTGTTCTCGTCTGGAGACGTCCAACCCAC\n", "\n", "idx 18 locidx 904\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 23 0 0]\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[23 0 0 0]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 23 0]\n", "20 A\n", "25 (20, 5, 5, 0)\n", "[ 0 23 0 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[23 0 0 0]\n", "54 A\n", "59 (54, 5, 5, 0)\n", "[ 0 23 0 0]\n", "85 A\n", "90 (85, 5, 5, 0)\n", "[ 0 23 0 0]\n", "GGCAACAACCTACGTGGGCTATATCCAGCATCTAAAACGTCCGGCGGAGTCTCAATTGTGGCGGAGCTACCTTCTGGCGTGGCCGA\n", "\n", "idx 18 locidx 905\n", "13 A\n", "18 (13, 5, 5, 0)\n", "[ 0 23 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 23 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[23 0 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 23]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[23 0 0 0]\n", "83 C\n", "88 (83, 5, 5, 0)\n", "[23 0 0 0]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 22 1]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 23 0]\n", "ACCTCAAGTTCTTACCTGATAACTAGGCTGTACCCTACCGGACCGAATCCAGTATTTTAGAGTGACATGTCCTCCTCTCACTCCTT\n", "\n", "idx 18 locidx 906\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[16 0 0 0]\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[16 0 0 0]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 16 0]\n", "71 G\n", "76 (71, 5, 5, 0)\n", "[ 0 0 0 16]\n", "78 G\n", "83 (78, 5, 5, 0)\n", "[ 0 0 0 16]\n", "GAAAATCGGTTGAACGACCTCTGCTCAAATGCGCTATGCAGGTTTCCGTACCACGTTTTGTACCGAGACCAGGAACTGGATTTATC\n", "\n", "idx 18 locidx 907\n", "26 C\n", "31 (26, 5, 5, 0)\n", "[17 1 0 0]\n", "GTCTACTAGTCGATGACTAATATACTCACGACCTACTACTCCTAGGCGGGAAAAGGCTCCTCGGGGTCCTCAAAGCAGGATAATGC\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\n", "idx 18 locidx 908\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 17 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[17 0 0 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 17 0 0]\n", "58 G\n", "63 (58, 5, 5, 0)\n", "[ 0 0 0 17]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 17 0]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 17 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 17]\n", "84 A\n", "89 (84, 5, 5, 0)\n", "[ 0 17 0 0]\n", "ATCTTTGTCGTATCAGATCCTTCATTTTTCTACTCAACCGGTCGGGAAATCGAGAGACGTTGCATAGTAGTAGCGTACAAAGAGAC\n", "\n", "NOT HERE\n", "idx 18 locidx 910\n", "3 G\n", "8 (3, 5, 5, 0)\n", "[ 0 0 0 16]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 16 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[16 0 0 0]\n", "52 G\n", "57 (52, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TCTGCAGCCTGAACTATTGTTTTCTGTTTGTAGACGCACCGTCCTACCGAATGAAGGCTGTACAATCCCGTTGAGCGACTGGATAA\n", "\n", "idx 18 locidx 911\n", "20 C\n", "25 (20, 5, 5, 0)\n", "[19 0 0 0]\n", "25 G\n", "30 (25, 5, 5, 0)\n", "[ 0 0 0 19]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GTCACATAAGGCCGACTTGTCATGAGTTAAGGCTCAGGACAATAGGACGAAAGTCAGTCTACATGCGGGATAGAAACTGTCGCCTA\n", "\n", "idx 18 locidx 912\n", "24 C\n", "29 (24, 5, 5, 0)\n", "[20 0 0 0]\n", "51 S\n", "56 (51, 5, 5, 0)\n", "[ 7 0 0 13]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 19 1 0]\n", "77 C\n", "82 (77, 5, 5, 0)\n", "[20 0 0 0]\n", "TGGTTGTGAATTTTGTGGCGTATTCAAACACACGTACTGGATTTTCGGTTASAGGCGTGAGTGCCGATCCCCCGGGGCTAGATGAG\n", "\n", "idx 18 locidx 913\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[21 0 0 0]\n", "66 G\n", "71 (66, 5, 5, 0)\n", "[ 0 0 0 21]\n", "69 C\n", "74 (69, 5, 5, 0)\n", "[21 0 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[21 0 0 0]\n", "82 A\n", "87 (82, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CTCCTCTATGCGCGCTCATGACGGACTCGTCCGCCATATGTAAGGGCACCATTCAAACCCACTGTAGGTCTAGCATGTCGTGATAC\n", "\n", "idx 18 locidx 914\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 14 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[14 0 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 14 0 0]\n", "CAGCCACACTATCGATCGTTACATATACGTTGCAACACGATAGCAACCTTTGTGTAGGATTTGCCGCCTTAGATCTACTGCCAGTG\n", "\n", "idx 18 locidx 915\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 19 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 19 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 19]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 19 0]\n", "GTAGGGCTGGTCTGTATTTCGACGTGGGAATCGTTAGCGCAACCTTGAAGGCCTTTCGCATTTCCTACGCTAAGGCATCACTTGGG\n", "\n", "idx 18 locidx 916\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 19 0]\n", "8 G\n", "13 (8, 5, 5, 0)\n", "[ 0 0 0 19]\n", "16 C\n", "21 (16, 5, 5, 0)\n", "[19 0 0 0]\n", "CCGCAATCGGTAGTGCCCGTAAATGCTGCAGGCTCTGAAACGACCGCAGCCAATATCGGCCGCGCAGCTTTAGCAACCGCATGGGA\n", "\n", "idx 18 locidx 917\n", "30 A\n", "35 (30, 5, 5, 0)\n", "[ 0 18 0 0]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[18 0 0 0]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 18 0]\n", "61 T\n", "66 (61, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CTATGCAGGCTATGTATTCGGTTTCATTATATTTCCAGAAAATCTGTTTTAGCATACGCCGTCACTCCTATATTAACGGCTTAAAC\n", "\n", "idx 18 locidx 918\n", "0 T\n", "5 (0, 5, 5, 0)\n", "[ 0 0 12 0]\n", "50 C\n", "55 (50, 5, 5, 0)\n", "[12 0 0 0]\n", "80 W\n", "85 (80, 5, 5, 0)\n", "[0 6 6 0]\n", "TACCCACTAGACGTCTTAGCTGGTTCAGTGGCCAGCCCTCCTCCGTGGTGCTGGATATATGTAAAATTTTTGAATGCCTTWGACGT\n", "\n", "idx 18 locidx 919\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 26]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 26]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[26 0 0 0]\n", "77 G\n", "82 (77, 5, 5, 0)\n", "[ 0 0 0 26]\n", "CAGACACGAAATAATGGCAGAATCCTTACTTGCAAACAAATGGGATTCTCGTCGTCGGTGTCGATCGGCATTCTTCTGAGTGAGAT\n", "\n", "idx 18 locidx 920\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[18 0 0 0]\n", "40 C\n", "45 (40, 5, 5, 0)\n", "[18 0 0 0]\n", "67 C\n", "72 (67, 5, 5, 0)\n", "[18 0 0 0]\n", "CTCATCTCCTGATATCGTCACGTTTTCCTAAGGGAGTGGCCCATAGGACCCCCATGCGCAACGTCTTCGACTTAAGGTTACGGGCA\n", "\n", "idx 18 locidx 921\n", "19 C\n", "24 (19, 5, 5, 0)\n", "[24 0 0 0]\n", "42 T\n", "47 (42, 5, 5, 0)\n", "[ 0 0 24 0]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 24 0 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 24 0 0]\n", "81 W\n", "86 (81, 5, 5, 0)\n", "[ 0 15 9 0]\n", "TCCCAAGCCACTTTTTTGGCCGACGGGCGTCCTAGGGCGTCATCGTCACTCTGACGGAAGCAAGTACATAACCAAGCTAGTWTATT\n", "\n", "idx 18 locidx 922\n", "10 R\n", "15 (10, 5, 5, 0)\n", "[ 0 8 0 14]\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[22 0 0 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[22 0 0 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 22 0 0]\n", "78 A\n", "83 (78, 5, 5, 0)\n", "[ 0 22 0 0]\n", "GATGCCGAGARGTCATAACGGCACGAATGTCACCAGTTATTTTCCTAATCTAAGACAACAAATAACAAGGAAGTCATTATAGATGT\n", "\n", "idx 18 locidx 923\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 24 0]\n", "GCCTCGATAGCCTTCGTCCCTGCTGATTGTTAACTATGGCACGACAGGCCCTCACTGAAAAAGCATTCAAATTAAGAAACGGATTA\n", "\n", "idx 18 locidx 924\n", "16 T\n", "21 (16, 5, 5, 0)\n", "[ 0 0 21 0]\n", "33 A\n", "38 (33, 5, 5, 0)\n", "[ 0 21 0 0]\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 21]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 21 0 0]\n", "CTCTTGCTAAGACCTCTCGGCACGCGTGACTATATCAAACTGACGTGGGGGTATTTACCGAGGTTCGAAAAGTTCATATCACTAAT\n", "\n", "idx 18 locidx 925\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 18 0 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 18 0]\n", "48 A\n", "53 (48, 5, 5, 0)\n", "[ 0 18 0 0]\n", "85 Y\n", "90 (85, 5, 5, 0)\n", "[ 8 0 10 0]\n", "TATCTCGACTTTACCGATCGCCGCATATGACAGCCGACATGTCTGCCTAGCCGCTTGACGGCCAATATAGAGTCGTTGGTTACATY\n", "\n", "idx 18 locidx 926\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 21 0 0]\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 21 0]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 21 0]\n", "24 T\n", "29 (24, 5, 5, 0)\n", "[ 0 0 21 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 21]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 21]\n", "66 Y\n", "71 (66, 5, 5, 0)\n", "[11 0 10 0]\n", "67 K\n", "72 (67, 5, 5, 0)\n", "[ 0 0 11 10]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CCACTGTATGAAGCACCTCCTGGTTCGGCCGCGAGGCCATTTCCTTCTGAGCCTGTACTGCCGTGGYKAGATTTACGACTAGTATC\n", "\n", "idx 18 locidx 927\n", "34 T\n", "39 (34, 5, 5, 0)\n", "[ 0 0 23 0]\n", "55 T\n", "60 (55, 5, 5, 0)\n", "[ 0 0 23 0]\n", "56 A\n", "61 (56, 5, 5, 0)\n", "[ 0 23 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 23]\n", "AGCGCATCAAATATTCTAGGATCTTTCAACGGAGTAACCCAAATGTGTCCGGCATTAGATCTGTCCGAGGAGAGCTGACGACAAGC\n", "\n", "idx 18 locidx 928\n", "57 G\n", "62 (57, 5, 5, 0)\n", "[ 0 0 0 27]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 27 0]\n", "84 K\n", "89 (84, 5, 5, 0)\n", "[ 0 0 15 12]\n", "TGCGGTGGGCAGTGGAGCTCGACTAGGAATGCGAATTACTGCAAGGATGTAGAAATCGAGAGGGAGCCTCTCCAGGCAGGCGGGKG\n", "\n", "idx 18 locidx 929\n", "3 T\n", "8 (3, 5, 5, 0)\n", "[ 0 0 16 0]\n", "18 K\n", "23 (18, 5, 5, 0)\n", "[0 0 8 8]\n", "40 A\n", "45 (40, 5, 5, 0)\n", "[ 0 16 0 0]\n", "42 G\n", "47 (42, 5, 5, 0)\n", "[ 0 0 0 16]\n", "45 m\n", "50 (45, 5, 5, 0)\n", "[8 8 0 0]\n", "61 G\n", "66 (61, 5, 5, 0)\n", "[ 0 0 0 16]\n", "GTATCTATCATCTAAGGAKTTAGATGGTATTGACGGAGAAAAGGTmTAAGACATCATCTGAGCCTCTCAAACATTGAGTCCTCTTT\n", "\n", "idx 18 locidx 930\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[18 0 0 0]\n", "53 T\n", "58 (53, 5, 5, 0)\n", "[ 0 0 18 0]\n", "TTCGCTCGTTCTAGTTACGCCAACGATACTGCTACTTGCCTTAGTGTGGAGCATAGTCTCTGATGAGAGGACTGTTCGTCTATTAC\n", "\n", "idx 18 locidx 931\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[20 0 0 0]\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 20]\n", "21 C\n", "26 (21, 5, 5, 0)\n", "[20 0 0 0]\n", "23 T\n", "28 (23, 5, 5, 0)\n", "[ 0 0 20 0]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 20 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 20]\n", "44 T\n", "48 (44, 5, 5, 1)\n", "[ 0 0 20 0]\n", "47 T\n", "51 (47, 5, 5, 1)\n", "[ 0 0 20 0]\n", "84 A\n", "87 (84, 5, 5, 2)\n", "[ 0 20 0 0]\n", "85 T\n", "88 (85, 5, 5, 2)\n", "[ 0 0 20 0]\n", "CAGTGAGTTATGATGGAACCGCGTGAAGTACCATTCGGAAGCC-TGATCCAAGAATTTGCCTCGGTT-CTTGGTAGAAGGTGGGAT\n", "\n", "idx 18 locidx 932\n", "2 T\n", "7 (2, 5, 5, 0)\n", "[ 0 0 23 0]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 23]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 23]\n", "62 A\n", "67 (62, 5, 5, 0)\n", "[ 0 23 0 0]\n", "82 C\n", "87 (82, 5, 5, 0)\n", "[23 0 0 0]\n", "GGTACGTCTCAAGGTGGCTGCGGGTTAAGGAAATGTCGTGCGGAGCAAGCCATCACGGTTCGACGTTACACGCCCAAAACTACGTT\n", "\n", "idx 18 locidx 933\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 20 0 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[20 0 0 0]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CAGTGTAACGATACTTCTTGGGGAGTTGGGCTGTCCTAAAGAGACCGCCCACGTCTTCTTTAATAAGATTGGTGCACCGTACCACT\n", "\n", "idx 18 locidx 934\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[20 0 0 0]\n", "47 C\n", "52 (47, 5, 5, 0)\n", "[20 0 0 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[20 0 0 0]\n", "GAGGTTTAAGTGACTTTGTAGTAGAAAATCAAACGTCGGGGGCTCCTCAGTTACTCGCCCCACAACAGAGCATGCGGTATCCCTTC\n", "\n", "idx 18 locidx 935\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 20 0]\n", "33 C\n", "38 (33, 5, 5, 0)\n", "[20 0 0 0]\n", "39 A\n", "44 (39, 5, 5, 0)\n", "[ 0 20 0 0]\n", "46 A\n", "51 (46, 5, 5, 0)\n", "[ 0 20 0 0]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 20]\n", "79 A\n", "84 (79, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGGGGTGAGACCCAGATTAAAAACCCCTCAATACATGCCAACGTCAAGGGACTCCTTCGTCCACATTCGAGGGTCTGACAGGGTCC\n", "\n", "idx 18 locidx 936\n", "1 G\n", "6 (1, 5, 5, 0)\n", "[ 0 0 0 18]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 1 17 0 0]\n", "15 T\n", "20 (15, 5, 5, 0)\n", "[ 0 0 18 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 18]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 18 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 18 0 0]\n", "85 C\n", "90 (85, 5, 5, 0)\n", "[18 0 0 0]\n", "TGCCGACAAATGGTATAGAGGACGCCTTCGTCACTACTTTCACTAAGGTGCCTAGAGAGGTATTCCTGTCTGTGATTAGCCAGGAC\n", "\n", "idx 18 locidx 937\n", "33 T\n", "38 (33, 5, 5, 0)\n", "[ 0 0 25 0]\n", "46 W\n", "51 (46, 5, 5, 0)\n", "[ 0 12 13 0]\n", "AACATTTTCTTTAAGTTCGGCAGCGTTTATTCCTCCGTATGTTTATWGCGTGGCGATCACTCGTATCGATCAGGCGGCCAAATACG\n", "\n", "idx 18 locidx 938\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 24 0 0]\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 24 0 0]\n", "40 C\n", "45 (40, 5, 5, 0)\n", "[24 0 0 0]\n", "62 C\n", "67 (62, 5, 5, 0)\n", "[24 0 0 0]\n", "ATATCGCTACATGCCACTCACAGACTGCTCCTCGGTGACGCGCAAATAGCGACACGACACCGCTTACCGTTCCCCATAAATCTATC\n", "\n", "idx 18 locidx 939\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[21 0 0 0]\n", "9 A\n", "14 (9, 5, 5, 0)\n", "[ 0 21 0 0]\n", "10 A\n", "15 (10, 5, 5, 0)\n", "[ 0 21 0 0]\n", "35 T\n", "40 (35, 5, 5, 0)\n", "[ 0 0 21 0]\n", "46 T\n", "51 (46, 5, 5, 0)\n", "[ 0 0 21 0]\n", "55 C\n", "60 (55, 5, 5, 0)\n", "[21 0 0 0]\n", "62 T\n", "67 (62, 5, 5, 0)\n", "[ 0 0 21 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[21 0 0 0]\n", "GCGCAGTCCAACGTTTTTTTGTTCGCTCAGCGATGTCCCTACATTCTGTTCTCTGCAAATTATCACTTTGCAAGCCTTGAGCGGCA\n", "\n", "idx 18 locidx 940\n", "5 C\n", "10 (5, 5, 5, 0)\n", "[19 0 0 0]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 19 0]\n", "36 G\n", "41 (36, 5, 5, 0)\n", "[ 0 0 0 19]\n", "55 G\n", "60 (55, 5, 5, 0)\n", "[ 0 0 0 19]\n", "GGACACGACATATTGCAACGAAACCGCCCTCGCGTAGCTGACAACAGTCGAAGCGGTTAAAACTTGTATTACTCACAGCTTGATAT\n", "\n", "idx 18 locidx 941\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[16 0 0 0]\n", "83 G\n", "88 (83, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TGAGATATGCTAGGAAATTAAACGCTTGTGCACGTCAAAAGCACTTGGTTGAGCGTAGACGTTTAATGTTGGAGGGGCGGTGCGGG\n", "\n", "idx 18 locidx 942\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 21 0]\n", "49 G\n", "54 (49, 5, 5, 0)\n", "[ 0 0 0 21]\n", "57 K\n", "62 (57, 5, 5, 0)\n", "[ 0 0 13 8]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 21 0]\n", "CCAACACGTTAAACGCGTGACTGTAAACTTGTTGCTGGCTAACGAACAAGGACGGAGKGTTCACCATCCTCGTTCAGAATTCGTCG\n", "\n", "idx 18 locidx 943\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 19 0]\n", "18 A\n", "23 (18, 5, 5, 0)\n", "[ 0 19 0 0]\n", "AGACGATCCTTGAAGTCTAGGTGCTCGCTAGACAGTTCGGCGACTCAGGCTTGATGGCTCTTCATAGGAGGCCCAATCATAGTTGG\n", "\n", "idx 18 locidx 944\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 23 0 0]\n", "43 G\n", "48 (43, 5, 5, 0)\n", "[ 0 0 0 23]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 23]\n", "65 T\n", "70 (65, 5, 5, 0)\n", "[ 0 0 23 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 23 0 0]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 23]\n", "73 C\n", "78 (73, 5, 5, 0)\n", "[23 0 0 0]\n", "ATAAGAGTATCAAATGACTATTCACCATCTTGGGTATGTACTTGCGATTTTAGACGTCGCTGATGTTAACCCGCCATGCCAAATAA\n", "\n", "idx 18 locidx 945\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 27 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[27 0 0 0]\n", "ACCTTATGTGACTTCACACCATTGATGTACAACTAGGGGCACCCCCTTGGGTTCAATGGTGGATCTCTAAGCGCACCAGTCCGTCC\n", "\n", "idx 18 locidx 946\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 20 0 0]\n", "2 S\n", "7 (2, 5, 5, 0)\n", "[10 0 0 10]\n", "61 C\n", "66 (61, 5, 5, 0)\n", "[19 0 0 1]\n", "GASTTAAACCATTCCGCGACACTGTTGTCGCCTTCAAGCACCGTGCAGCAACCGCGCCGGCCGGCGCACATACGAGTGCTGTCCCA\n", "\n", "idx 18 locidx 947\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 23 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 23]\n", "43 C\n", "48 (43, 5, 5, 0)\n", "[23 0 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 23]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 23 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[23 0 0 0]\n", "83 T\n", "88 (83, 5, 5, 0)\n", "[ 0 0 23 0]\n", "TCCGACTGGCGGCTAGGTACTGTCATGACACTGAACGAACATGCGCCGTTATGTGCTAATTGCATAGCCCCAGGCGGGCCATCTGC\n", "\n", "idx 18 locidx 948\n", "12 G\n", "17 (12, 5, 5, 0)\n", "[ 0 0 0 14]\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[14 0 0 0]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 14]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 14]\n", "TACCATAAGCTAGCGACGGGTCACGTTTGGAAATGGACCATTTTGATAAACATCGCACGTTTCCGTGCCGAGAGGCGTTCCCAGAT\n", "\n", "idx 18 locidx 949\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 23 0 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[23 0 0 0]\n", "GTGGGGCGATAGATGACGGCAAGTTGCTGGAGGTGCATACCCCGATTCTCATCCTCCATCGTGAATTCCCATCGATCATGCCACGT\n", "\n", "idx 19 locidx 950\n", "20 T\n", "25 (20, 5, 5, 0)\n", "[ 0 0 20 0]\n", "30 G\n", "35 (30, 5, 5, 0)\n", "[ 0 0 0 20]\n", "68 G\n", "73 (68, 5, 5, 0)\n", "[ 0 0 0 20]\n", "71 A\n", "76 (71, 5, 5, 0)\n", "[ 0 20 0 0]\n", "TGGGGTATGTGGTCAATCCATAGACATTATGCGTTCTTCGCACCAGTATTCCACACATTTTATCTAACGAGATGTGTGCCCAAACG\n", "\n", "idx 19 locidx 951\n", "7 T\n", "12 (7, 5, 5, 0)\n", "[ 0 0 23 0]\n", "15 C\n", "20 (15, 5, 5, 0)\n", "[22 1 0 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 23]\n", "TTGGGATTACGGATCCACTCACGCATGGTCAGTAGTGTTAGTCCGGGCCCCTTTTGCAGTGCATCCGTTCACCGGAGGAAGGACGT\n", "\n", "idx 19 locidx 952\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 18 0 0]\n", "45 G\n", "50 (45, 5, 5, 0)\n", "[ 0 0 0 18]\n", "48 G\n", "53 (48, 5, 5, 0)\n", "[ 0 0 0 18]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 18 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 18]\n", "77 M\n", "82 (77, 5, 5, 0)\n", "[10 8 0 0]\n", "GTCGGGGATCGTCTCTGTATTGGACGATCAATCAGCATGCGTTTGGAGGACTAAGCGAGTAATAGGTACAATCCTACMTTCGGTCA\n", "\n", "idx 19 locidx 953\n", "2 A\n", "7 (2, 5, 5, 0)\n", "[ 0 20 0 0]\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 20 0 0]\n", "22 A\n", "27 (22, 5, 5, 0)\n", "[ 0 20 0 0]\n", "70 C\n", "75 (70, 5, 5, 0)\n", "[20 0 0 0]\n", "GGAGGGACAGTTTGCAGTAGCGATCAATAGTTATTTACAATGTAAGGTCGGGTGACGCCGATTTGAAATACATCATCTACGGCCTC\n", "\n", "idx 19 locidx 954\n", "3 A\n", "8 (3, 5, 5, 0)\n", "[ 0 23 0 0]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 23]\n", "32 A\n", "37 (32, 5, 5, 0)\n", "[ 0 23 0 0]\n", "66 R\n", "71 (66, 5, 5, 0)\n", "[ 0 11 0 12]\n", "69 Y\n", "74 (69, 5, 5, 0)\n", "[11 0 12 0]\n", "70 y\n", "75 (70, 5, 5, 0)\n", "[12 0 11 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[23 0 0 0]\n", "CCCACCAAGAGCTTAATGTGGAGAAAAATGCTAACGTGTGCAATTCCTAGATTAACTACAGTCCGARACYyCTCCTTTCGGCTCTT\n", "\n", "idx 19 locidx 955\n", "1 A\n", "6 (1, 5, 5, 0)\n", "[ 0 16 0 0]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 16 0]\n", "TAAGAGCGAGCTCAAAGGGACGCAATCGGTTAGTGCCGGGCGCTTATCGGTTACAATTCGAGACTATCCCATCTTCGAGATGCCCC\n", "\n", "idx 19 locidx 956\n", "35 G\n", "40 (35, 5, 5, 0)\n", "[ 0 0 0 21]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[21 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[21 0 0 0]\n", "57 C\n", "62 (57, 5, 5, 0)\n", "[21 0 0 0]\n", "80 A\n", "85 (80, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TCCGACCATGACGTCCATGCGCTTACTTCTAAGGGGGTGCTATCCGCTTATCGCAACCAGTGCATTTGGGATGGTCTTTGACAAGG\n", "\n", "idx 19 locidx 957\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 16 0 0]\n", "31 S\n", "36 (31, 5, 5, 0)\n", "[9 0 0 7]\n", "38 A\n", "43 (38, 5, 5, 0)\n", "[ 0 16 0 0]\n", "45 C\n", "50 (45, 5, 5, 0)\n", "[16 0 0 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 16 0]\n", "52 k\n", "57 (52, 5, 5, 0)\n", "[0 0 7 9]\n", "54 T\n", "59 (54, 5, 5, 0)\n", "[ 0 0 16 0]\n", "69 T\n", "74 (69, 5, 5, 0)\n", "[ 0 0 16 0]\n", "CCTGGTTTGTTATTGAATCGACCATGTTTTTSGCCCCTACTCGGCCATCGGTkTTCAGTAAGGCCAGGCTAGCGTCAAACATTATG\n", "\n", "idx 19 locidx 958\n", "12 A\n", "17 (12, 5, 5, 0)\n", "[ 0 16 0 0]\n", "37 G\n", "42 (37, 5, 5, 0)\n", "[ 0 0 0 16]\n", "TCCGCGCGGTGGACGGAGCTATAACACACCGCCCTTAGGTGACTCCCTACACTACTTGATAATTATAAGCCGAACCCATCCGCATA\n", "\n", "idx 19 locidx 959\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 20]\n", "60 T\n", "65 (60, 5, 5, 0)\n", "[ 0 0 20 0]\n", "64 R\n", "69 (64, 5, 5, 0)\n", "[ 0 9 0 11]\n", "76 A\n", "81 (76, 5, 5, 0)\n", "[ 0 20 0 0]\n", "CATCGTTGTCAAATAGTATGGTGATGCTAGAATACCGCTGGCAGAAAATAGCCCGGAATATCCCRAGTCCCCATTCAGACTATCAA\n", "\n", "idx 19 locidx 960\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 21 0]\n", "31 G\n", "36 (31, 5, 5, 0)\n", "[ 0 0 0 21]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 21 0]\n", "69 A\n", "74 (69, 5, 5, 0)\n", "[ 0 21 0 0]\n", "TGTTCCAGGATTAGGCGGCATGGATGTCATTGTTAAAACTTTCTCAGTCTTCATCACGAGTGCCAAGAGATCTTCATGGGACAAAT\n", "\n", "idx 19 locidx 961\n", "2 C\n", "7 (2, 5, 5, 0)\n", "[19 0 0 0]\n", "35 A\n", "40 (35, 5, 5, 0)\n", "[ 0 19 0 0]\n", "36 T\n", "41 (36, 5, 5, 0)\n", "[ 0 0 19 0]\n", "39 T\n", "44 (39, 5, 5, 0)\n", "[ 0 0 19 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[19 0 0 0]\n", "78 C\n", "83 (78, 5, 5, 0)\n", "[19 0 0 0]\n", "GGCAGCGGCTTATAACCCCAAGGGAATACGGAAGCATTTTATTGTTGAACATGCTGAGGACTAACGCGCCAAATCTCGCTCCATAG\n", "\n", "idx 19 locidx 962\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[23 0 0 0]\n", "17 T\n", "22 (17, 5, 5, 0)\n", "[ 0 0 23 0]\n", "26 G\n", "31 (26, 5, 5, 0)\n", "[ 0 0 0 23]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 23]\n", "85 T\n", "90 (85, 5, 5, 0)\n", "[ 0 0 23 0]\n", "CAACCGAATGGCCCCCTTTTCGCATAGTGACAGAGTAGACGCGTGCATGCCTGATCAGGGCTAAGGTTTTTAGTACATGGTGCAGT\n", "\n", "idx 19 locidx 963\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 14 0]\n", "10 T\n", "15 (10, 5, 5, 0)\n", "[ 0 0 14 0]\n", "70 T\n", "75 (70, 5, 5, 0)\n", "[ 0 0 14 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 14]\n", "TCCCTAGATTTTGGGTGCATCAATGTGCTCCCAGTGGAGAGATAGTTCGACTCGCTCACGAAGCAATTATTGGCGAATGGTCAGCA\n", "\n", "idx 19 locidx 964\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 21 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 21 0]\n", "66 C\n", "71 (66, 5, 5, 0)\n", "[21 0 0 0]\n", "AGGTATGCTCGTAATTTAATAAAGTTCTGTCATCACAGAACCTGGTGGCTACGACTGAGAGGTTTGCGATCAGTGGCGTCCTGGCA\n", "\n", "idx 19 locidx 965\n", "6 A\n", "11 (6, 5, 5, 0)\n", "[ 0 20 0 0]\n", "29 C\n", "34 (29, 5, 5, 0)\n", "[20 0 0 0]\n", "CGTTAAAGCGATCAGGGGTGTCGTATTCGCGAATGCACTCGCAAGGCTCACTGCGCTAGTGAGCCCCTGGATCGTATGCGCTTTCC\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "idx 19 locidx 966\n", "0 C\n", "5 (0, 5, 5, 0)\n", "[23 0 0 0]\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[23 0 0 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[23 0 0 0]\n", "17 A\n", "22 (17, 5, 5, 0)\n", "[ 0 23 0 0]\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 23]\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 23 0]\n", "71 C\n", "76 (71, 5, 5, 0)\n", "[22 0 1 0]\n", "CGTTCAGCTGGAAACAAAACGATTGCCGGTCACCAAGCGATAAACAGTCGGAGGTGGTGGTTGGGCCCATACGCAGACAACCCCTG\n", "\n", "idx 19 locidx 967\n", "29 T\n", "34 (29, 5, 5, 0)\n", "[ 0 0 18 0]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[18 0 0 0]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[18 0 0 0]\n", "80 C\n", "85 (80, 5, 5, 0)\n", "[18 0 0 0]\n", "ATATAGAAACAAAGCCCCTCACTCCTAGATCATGGGGCGGCCTATTGATGTTAGCGCAACTAGTGTTCAGTAGAGTGCGACCTCGC\n", "\n", "idx 19 locidx 968\n", "13 G\n", "18 (13, 5, 5, 0)\n", "[ 0 0 0 20]\n", "44 G\n", "49 (44, 5, 5, 0)\n", "[ 0 0 0 20]\n", "AACGAAATCTGCTGTCGTCGAGCATTTATACGCTGGATGTATATGAAAGGTACAAAAGTACTGCGGACCGAACCTATGACGATATG\n", "\n", "idx 19 locidx 969\n", "14 T\n", "19 (14, 5, 5, 0)\n", "[ 0 0 14 0]\n", "49 C\n", "54 (49, 5, 5, 0)\n", "[14 0 0 0]\n", "50 T\n", "55 (50, 5, 5, 0)\n", "[ 0 0 14 0]\n", "CGAAACCGGCGCACTTCTCCTGGAATTCCAGCGCCACTTCGCCTAGCATCTGCGGTGTCTCAGACATGAAGAACGCGTAGAACTTG\n", "\n", "idx 19 locidx 970\n", "2 W\n", "7 (2, 5, 5, 0)\n", "[ 0 12 18 0]\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 30 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 30]\n", "CGWTGCTGCTCTCCATCGTGGTCAGAAATGAACTTTTTTTTAGGTCCCCTTTGAGGCTACTTACCGAGTGTACGATATGCGAACAG\n", "\n", "idx 19 locidx 971\n", "15 A\n", "20 (15, 5, 5, 0)\n", "[ 0 21 0 0]\n", "47 G\n", "52 (47, 5, 5, 0)\n", "[ 0 0 0 21]\n", "56 G\n", "61 (56, 5, 5, 0)\n", "[ 0 0 0 21]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 21]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 21 0]\n", "81 A\n", "86 (81, 5, 5, 0)\n", "[ 0 21 0 0]\n", "ACGGGCAGCCATCTGAAAGCGCGGAATTTGATAAGAGTTAGTACCTAGATTGCATTGCTGTGTGCGCGTGTTCGATTGAAAATGCC\n", "\n", "idx 19 locidx 972\n", "6 T\n", "11 (6, 5, 5, 0)\n", "[ 0 0 18 0]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 18]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 18 0]\n", "CATCCCTAAGGTAGAGATTAGACTGAGCCCTATCCTAGCTATGCTTATTTCGACGTCAAGATGCGGGATTGGCAAGCACCGCCGCT\n", "\n", "idx 19 locidx 973\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 24 0 0]\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[24 0 0 0]\n", "46 C\n", "51 (46, 5, 5, 0)\n", "[24 0 0 0]\n", "52 A\n", "57 (52, 5, 5, 0)\n", "[ 0 24 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 24 0]\n", "CGCCTCTACATGAAAGGCTCTACAGGTGCTCACTTCAGGCCTACCTCCCTGGATATGCCGGTAATACTTTACCGATTGGTGAGAGT\n", "\n", "idx 19 locidx 974\n", "8 A\n", "13 (8, 5, 5, 0)\n", "[ 0 19 0 0]\n", "38 T\n", "43 (38, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 A\n", "72 (67, 5, 5, 0)\n", "[ 0 19 0 0]\n", "72 K\n", "77 (72, 5, 5, 0)\n", "[ 0 0 11 8]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 19 0 0]\n", "TTGGTATTAAGGCGGAGCCCGAGGCTAGTGTGCGCTCGTACCTTATACGTTCCTGTCCTTAAGTAGTAGAAGKAAACGTAGTTTTG\n", "\n", "idx 19 locidx 975\n", "37 A\n", "42 (37, 5, 5, 0)\n", "[ 0 24 0 0]\n", "CGGATACATATGTGCAGTGCGGCGATGTTCACCTCGCAACCTTACGAATTCGAAGACCGTGTTAGATATGGGGCCATGCCTTTATC\n", "\n", "idx 19 locidx 976\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 24 0 0]\n", "2 G\n", "7 (2, 5, 5, 0)\n", "[ 0 0 0 24]\n", "25 C\n", "30 (25, 5, 5, 0)\n", "[24 0 0 0]\n", "31 A\n", "36 (31, 5, 5, 0)\n", "[ 0 24 0 0]\n", "34 C\n", "39 (34, 5, 5, 0)\n", "[24 0 0 0]\n", "66 A\n", "71 (66, 5, 5, 0)\n", "[ 0 24 0 0]\n", "84 G\n", "89 (84, 5, 5, 0)\n", "[ 0 0 0 24]\n", "AGGCCTGTGGATCCGGCATGATCCCCCGCTTAAACTTTCATGGAAAATTGCGCGGTCCCCCGGAAGAAGCGAAGGAACCGGGCAGG\n", "\n", "idx 19 locidx 977\n", "1 T\n", "6 (1, 5, 5, 0)\n", "[ 0 0 23 0]\n", "65 A\n", "70 (65, 5, 5, 0)\n", "[ 0 23 0 0]\n", "CTGCACAAGCTTTGAGCACGGGAGAGCCCGAGACAAGCTAAGGCAATATACGTCCAGTACTTAAGACTCATACAACCGTACATCCG\n", "\n", "idx 19 locidx 978\n", "6 G\n", "11 (6, 5, 5, 0)\n", "[ 0 0 0 22]\n", "30 T\n", "35 (30, 5, 5, 0)\n", "[ 0 0 22 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[22 0 0 0]\n", "63 A\n", "68 (63, 5, 5, 0)\n", "[ 0 22 0 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[22 0 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 22 0]\n", "ATGAGCGCGGCATTAGTGAGATGGGAAGTATCGCGTACACCCGGAGACTACGCCCGTGCCGACAGCGGGCCTATGATGTCGGAGCT\n", "\n", "idx 19 locidx 979\n", "13 C\n", "18 (13, 5, 5, 0)\n", "[22 0 0 0]\n", "42 A\n", "47 (42, 5, 5, 0)\n", "[ 0 22 0 0]\n", "47 T\n", "52 (47, 5, 5, 0)\n", "[ 0 0 22 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[22 0 0 0]\n", "CGGTATCGATAGTCGGGTAATATACAGCGGGTCTCTTCAATCAGGGTTCGCATAACGCAGGTCAGATGACACGTTTTTGCACTTTG\n", "\n", "idx 19 locidx 980\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 18]\n", "10 G\n", "15 (10, 5, 5, 0)\n", "[ 0 0 0 18]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 18 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[18 0 0 0]\n", "22 G\n", "27 (22, 5, 5, 0)\n", "[ 0 0 0 18]\n", "29 A\n", "34 (29, 5, 5, 0)\n", "[ 0 18 0 0]\n", "37 C\n", "42 (37, 5, 5, 0)\n", "[18 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[18 0 0 0]\n", "CTTAAGCTTGGGTTCCCAGCGGGTAGCTGACCTTCTACAGCTGCCCAGTGAGCTCCGCTCTGCCCAGGCTGCCGGCCCAAACGTAT--\n", "\n", "idx 19 locidx 981\n", "7 C\n", "12 (7, 5, 5, 0)\n", "[22 0 0 0]\n", "52 C\n", "57 (52, 5, 5, 0)\n", "[22 0 0 0]\n", "61 A\n", "66 (61, 5, 5, 0)\n", "[ 0 22 0 0]\n", "CAGGTGTCCCTTAGAGGGGGGTATCAAGAGTAACGGACACTAAGTGGTAACGCCAGAAGGCACGACTGCCGCTGGGTCGAGCACAC\n", "\n", "idx 19 locidx 982\n", "9 C\n", "14 (9, 5, 5, 0)\n", "[22 0 0 0]\n", "32 T\n", "37 (32, 5, 5, 0)\n", "[ 0 0 22 0]\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 22]\n", "56 C\n", "61 (56, 5, 5, 0)\n", "[22 0 0 0]\n", "64 G\n", "69 (64, 5, 5, 0)\n", "[ 0 0 0 22]\n", "65 G\n", "70 (65, 5, 5, 0)\n", "[ 0 0 0 22]\n", "72 G\n", "77 (72, 5, 5, 0)\n", "[ 0 0 0 22]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GGTCTGTGTCCCGTCTTGTATTTTAAGGGTGATGGTTTCTCGAACTCCGGGAGCACCAGCAAGTGGTGATCCGGGGATTTAACCGA\n", "\n", "idx 19 locidx 983\n", "34 G\n", "39 (34, 5, 5, 0)\n", "[ 0 0 0 22]\n", "47 A\n", "52 (47, 5, 5, 0)\n", "[ 0 22 0 0]\n", "48 T\n", "53 (48, 5, 5, 0)\n", "[ 0 0 22 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 22 0]\n", "82 G\n", "87 (82, 5, 5, 0)\n", "[ 0 0 0 22]\n", "GCTGCAAGTTCTGCTCGAATACAACCGGGAAATTGCTCGAGACATTCATCGCGGCAAGTGGAGCCCCTGCTGGCAGCCCCTTGGCT\n", "\n", "idx 19 locidx 984\n", "23 C\n", "28 (23, 5, 5, 0)\n", "[21 0 0 0]\n", "29 G\n", "34 (29, 5, 5, 0)\n", "[ 0 0 0 21]\n", "GAAAATTATGCGTTGTAAAGCAGCCAACAGTGCAAACAATACAAAGGCCCAATCGGTTACTGACTCTGCGCATGCGTAAATGCAGA\n", "\n", "idx 19 locidx 985\n", "25 T\n", "30 (25, 5, 5, 0)\n", "[ 0 0 21 0]\n", "51 T\n", "56 (51, 5, 5, 0)\n", "[ 0 0 21 0]\n", "81 C\n", "86 (81, 5, 5, 0)\n", "[21 0 0 0]\n", "AGTCTATCTGACGAGGGAAGCTAACTCGGCGAATAGATTGTTGCAGAACACTACTGAGGGTCTAGATTAGCAAGGATCTTCCATTT\n", "\n", "idx 19 locidx 986\n", "8 T\n", "13 (8, 5, 5, 0)\n", "[ 0 0 21 0]\n", "18 G\n", "23 (18, 5, 5, 0)\n", "[ 0 0 0 21]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 21 0]\n", "68 T\n", "73 (68, 5, 5, 0)\n", "[ 0 0 21 0]\n", "72 A\n", "77 (72, 5, 5, 0)\n", "[ 0 21 0 0]\n", "75 T\n", "80 (75, 5, 5, 0)\n", "[ 0 0 21 0]\n", "80 T\n", "85 (80, 5, 5, 0)\n", "[ 0 0 21 0]\n", "GTTCAGTGTGCACTACGAGTCCAAATAAGATCCTCTGCATGTCCAGTGAAGTCAGCCGTGTCCTAACATTGTACATGGAATATTCT\n", "\n", "idx 19 locidx 987\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[21 0 0 0]\n", "67 G\n", "72 (67, 5, 5, 0)\n", "[ 0 0 0 21]\n", "70 G\n", "75 (70, 5, 5, 0)\n", "[ 0 0 0 21]\n", "80 G\n", "85 (80, 5, 5, 0)\n", "[ 0 0 0 21]\n", "AAGCGCGCCTGAAGAATCTGGAAGTCACAATGTTACGCTCTCGTCCTCAAGTAAATTTATCATGTAAGGGGTATCGACGTGCAAGG\n", "\n", "idx 19 locidx 988\n", "21 T\n", "26 (21, 5, 5, 0)\n", "[ 0 0 20 0]\n", "41 T\n", "46 (41, 5, 5, 0)\n", "[ 0 0 20 0]\n", "48 C\n", "53 (48, 5, 5, 0)\n", "[20 0 0 0]\n", "TACTTCGGCGACTGAATGATATTAAATTGGTTACTTAGGCTTATCGAGCGGGGACTTGGGCGGTTTAACTCTGTCGACAAGAACTG\n", "\n", "idx 19 locidx 989\n", "9 G\n", "14 (9, 5, 5, 0)\n", "[ 0 0 0 20]\n", "26 A\n", "31 (26, 5, 5, 0)\n", "[ 0 20 0 0]\n", "41 A\n", "46 (41, 5, 5, 0)\n", "[ 0 20 0 0]\n", "73 G\n", "78 (73, 5, 5, 0)\n", "[ 0 0 0 20]\n", "TTACCAGCTGGCGTTCCTTCAGAGGAACCTTAGGTGGTAATACCAAAATCCCTGCGCAATGCGCATGTCTTGCGCCTCTTGATATT\n", "\n", "idx 19 locidx 990\n", "11 T\n", "16 (11, 5, 5, 0)\n", "[ 0 0 20 0]\n", "56 T\n", "61 (56, 5, 5, 0)\n", "[ 0 0 20 0]\n", "65 C\n", "70 (65, 5, 5, 0)\n", "[20 0 0 0]\n", "TCGTAGCAATCTGTGGCAGGTCTGGGTACTCTTCTTTGAACATTTGGCTTTTCCATTGCCAAGATCAAGATCGCGACTTAAAAATA\n", "\n", "idx 19 locidx 991\n", "7 G\n", "12 (7, 5, 5, 0)\n", "[ 0 0 0 19]\n", "49 T\n", "54 (49, 5, 5, 0)\n", "[ 0 0 19 0]\n", "51 C\n", "56 (51, 5, 5, 0)\n", "[19 0 0 0]\n", "68 A\n", "73 (68, 5, 5, 0)\n", "[ 0 19 0 0]\n", "78 T\n", "83 (78, 5, 5, 0)\n", "[ 0 0 19 0]\n", "CCAATAAGGTCCCGCTTTCTTCATATGCTAAGACGGGTTTATTGCCCCCTGCCCAGGTCCTCCTTCTTACCGCCAGTCTATATTGA\n", "\n", "idx 19 locidx 992\n", "46 G\n", "51 (46, 5, 5, 0)\n", "[ 0 0 0 19]\n", "54 C\n", "59 (54, 5, 5, 0)\n", "[19 0 0 0]\n", "72 T\n", "77 (72, 5, 5, 0)\n", "[ 0 0 19 0]\n", "74 A\n", "79 (74, 5, 5, 0)\n", "[ 0 19 0 0]\n", "81 G\n", "86 (81, 5, 5, 0)\n", "[ 0 0 0 19]\n", "84 T\n", "89 (84, 5, 5, 0)\n", "[ 0 0 19 0]\n", "TATAGGCGAGGGAATCCTAAGGTGAATAGGTTCGACCGAGTACACAGGGACTATCACGGTCGGGTCCAGCTGTCAAGAACGGCCTG\n", "\n", "idx 19 locidx 993\n", "0 A\n", "5 (0, 5, 5, 0)\n", "[ 0 20 0 0]\n", "8 C\n", "13 (8, 5, 5, 0)\n", "[20 0 0 0]\n", "12 T\n", "17 (12, 5, 5, 0)\n", "[ 0 0 20 0]\n", "14 C\n", "19 (14, 5, 5, 0)\n", "[20 0 0 0]\n", "16 A\n", "21 (16, 5, 5, 0)\n", "[ 0 20 0 0]\n", "27 A\n", "32 (27, 5, 5, 0)\n", "[ 0 20 0 0]\n", "53 C\n", "58 (53, 5, 5, 0)\n", "[20 0 0 0]\n", "59 T\n", "64 (59, 5, 5, 0)\n", "[ 0 0 20 0]\n", "AGATAACTCATCTTCGAGATCCCTGACACTAGGCACCACTGTACGACCTTCAACATTGCTAACGTTGTAGTTGTTGGGGACTAGGT\n", "\n", "idx 19 locidx 994\n", "4 T\n", "9 (4, 5, 5, 0)\n", "[ 0 0 19 0]\n", "67 T\n", "72 (67, 5, 5, 0)\n", "[ 0 0 19 0]\n", "74 G\n", "79 (74, 5, 5, 0)\n", "[ 0 0 0 19]\n", "TTTCTAGCTCGAAGGGCGGCGAGAGCCGAACCCGTTTGCGCGAAAGCCAGAAGTTACAACGAAGAACTACGAAAGTGGTGCGTAAA\n", "\n", "idx 19 locidx 995\n", "15 G\n", "20 (15, 5, 5, 0)\n", "[ 0 0 0 20]\n", "19 G\n", "24 (19, 5, 5, 0)\n", "[ 0 0 0 20]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 20]\n", "36 A\n", "41 (36, 5, 5, 0)\n", "[ 0 20 0 0]\n", "AGCTTTACTAGACGGGGTTGCTCCAAAAAGGTGTCAAATGACGTCACCTAACACATTTAATACCCCTTGACGCAGTGTGGCTAGAC\n", "\n", "idx 19 locidx 996\n", "13 T\n", "17 (13, 5, 5, 1)\n", "[ 0 0 17 0]\n", "15 A\n", "19 (15, 5, 5, 1)\n", "[ 0 17 0 0]\n", "35 T\n", "39 (35, 5, 5, 1)\n", "[ 0 0 17 0]\n", "50 A\n", "54 (50, 5, 5, 1)\n", "[ 0 17 0 0]\n", "54 C\n", "58 (54, 5, 5, 1)\n", "[17 0 0 0]\n", "ATGTTCCC-TAGATTAACACAACAGGTTTCTTCCCTCGGTGACTAACCATAGGACCCTTGCAAATGGAGCCGCTAGCACCGACTAC\n", "\n", "idx 19 locidx 997\n", "23 A\n", "28 (23, 5, 5, 0)\n", "[ 0 17 0 0]\n", "32 G\n", "37 (32, 5, 5, 0)\n", "[ 0 0 0 17]\n", "34 A\n", "39 (34, 5, 5, 0)\n", "[ 0 17 0 0]\n", "37 T\n", "42 (37, 5, 5, 0)\n", "[ 0 0 17 0]\n", "64 A\n", "69 (64, 5, 5, 0)\n", "[ 0 17 0 0]\n", "76 T\n", "81 (76, 5, 5, 0)\n", "[ 0 0 17 0]\n", "CTTTGGTCGTAGGTGAATCAGGTACTGTACCGGAAGGTTTACCACGTTGTTATGAAGGCTAAAGACAGTTATGTTGTGCCCCCCGC\n", "\n", "idx 19 locidx 998\n", "20 G\n", "25 (20, 5, 5, 0)\n", "[ 0 0 0 16]\n", "43 A\n", "48 (43, 5, 5, 0)\n", "[ 0 16 0 0]\n", "CACGGGCGTTCCACATCGATGAGGGGTTCCCAAGTTCATGGTGACGACTTCGAATCTACCTAAGGCAACATAAAGTCTGCGCAGAC\n", "\n", "idx 19 locidx 999\n", "39 C\n", "44 (39, 5, 5, 0)\n", "[14 0 0 0]\n", "64 T\n", "69 (64, 5, 5, 0)\n", "[ 0 0 14 0]\n", "84 C\n", "89 (84, 5, 5, 0)\n", "[14 0 0 0]\n", "TAGGTCATCGCCGTGCCCTCTGTTACATGGTTGTTTCCTCGGTTAGCTATAAATATAGGTGCACTTTATACGTTTTCGCGTAGGCG\n", "\n" ] } ], "source": [ "#step.remote_fill_depths()\n", "\n", "sample = step.data.samples[\"D\"]\n", "filler = VCF_filler(step.data, step.nsnps, sample)\n", "\n", "# run function loop\n", "for idx in range(len(filler.locbits)):\n", " filler.localidx = 0\n", " \n", " # locfill function\n", " edges = np.load(filler.trimbits[idx])\n", " inds = filler.indbits[idx]\n", " filler.loclines = iter(open(filler.locbits[idx], 'r'))\n", " \n", " while 1:\n", " try:\n", " filler.yield_loc()\n", " except StopIteration:\n", " break\n", "\n", " filler.locsnps = filler.snpsmap[filler.snpsmap[:, 0] == filler.locidx]\n", " filler.gtrim = edges[filler.localidx - 1]\n", " \n", " # denovo enter catgs func\n", " if (filler.locsnps.size) and (filler.sname in filler.names):\n", " nidx = filler.names.index(filler.sname)\n", " sidx = filler.sidxs[nidx]\n", " tups = [[int(j) for j in i.split(\"-\")] for i in sidx.split(\":\")]\n", " seq = filler.seqs[nidx]\n", " seqarr = np.array(list(seq))\n", "\n", " print('idx', idx, 'locidx', filler.locidx - 1)\n", "\n", " for snp in filler.locsnps[:, 1]:\n", " print(snp, seq[snp])\n", " ishift = seq[:snp].count('-')\n", " for tup in tups:\n", " cidx, coffset = tup\n", " pos = snp + (coffset) - ishift \n", " print(pos, (snp, filler.gtrim, coffset, ishift))\n", " print(filler.catgs[cidx, pos])\n", " if (pos >= 0) & (pos < filler.maxlen):\n", " filler.vcfd[filler.snpidx] += filler.catgs[cidx, pos]\n", "\n", " filler.snpidx += 1\n", " print(seq)\n", " print(\"\")\n", " \n", " else:\n", " print(\"NOT HERE\")\n", " filler.snpidx += filler.locsnps.shape[0]" ] }, { "cell_type": "code", "execution_count": 77, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "'TGGGGTATGTGGTCAATCCATAGACATTATGCGTTCTTCGCACCAGTATTCCACACATTTTATCTAACGAGATGTGTGCCCAAACG'" ] }, "execution_count": 77, "metadata": {}, "output_type": "execute_result" } ], "source": [ "seq" ] }, { "cell_type": "code", "execution_count": 42, "metadata": {}, "outputs": [], "source": [ "\n", "def merge(name, assemblies, rename_dict=None):\n", " \"\"\"\n", " Creates and returns a new Assembly object in which samples from two or more\n", " Assembly objects with matching names are 'merged'. Merging does not affect \n", " the actual files written on disk, but rather creates new Samples that are \n", " linked to multiple data files, and with stats summed.\n", "\n", " # merge two assemblies\n", " new = ip.merge('newname', (assembly1, assembly2))\n", "\n", " # merge two assemblies and rename samples\n", " rename = {\"1A_0\", \"A\", \"1B_0\", \"A\"}\n", " new = ip.merge('newname', (assembly1, assembly2), rename_dict=rename)\n", " \"\"\"\n", " # create new Assembly\n", " merged = Assembly(name)\n", "\n", " # one or multiple assemblies?\n", " try:\n", " _ = len(assemblies)\n", " except TypeError:\n", " assemblies = [assemblies]\n", "\n", " # iterate over all sample names from all Assemblies\n", " for data in assemblies:\n", "\n", " # make a deepcopy\n", " ndata = copy.deepcopy(data)\n", " for sname, sample in ndata.samples.items():\n", " \n", " # rename sample if in rename dict\n", " if sname in rename_dict:\n", " sname = rename_dict[sname]\n", " sample.name = sname\n", " \n", " # is it in the merged assembly already\n", " if sname in merged.samples:\n", " msample = merged.samples[sname]\n", " \n", " # update stats\n", " msample.stats.reads_raw += sample.stats.reads_raw\n", " if sample.stats.reads_passed_filter:\n", " msample.stats.reads_passed_filter += sample.stats.reads_passed_filter\n", " \n", " # append files\n", " msample.files.fastqs.append(sample.files.fastqs)\n", " msample.files.edits.append(sample.files.edits)\n", "\n", " # do not allow state >2 at merging (requires reclustering)\n", " # if merging WITHIN samples.\n", " msample.stats.state = min(sample.stats.state, 2)\n", "\n", " # merge its stats and files\n", " else:\n", " merged.samples[sname] = sample\n", "\n", " # Merged assembly inherits max of hackers values (max frag length)\n", " merged.hackersonly.max_fragment_length = max(\n", " [i.hackersonly.max_fragment_length for i in assemblies])\n", "\n", " # Set the values for some params that don't make sense inside mergers\n", " merged_names = \", \".join([i.name for i in assemblies])\n", " merged.params.raw_fastq_path = \"Merged: \" + merged_names\n", " merged.params.barcodes_path = \"Merged: \" + merged_names\n", " merged.params.sorted_fastq_path = \"Merged: \" + merged_names\n", "\n", " # return the new Assembly object\n", " merged.save()\n", " return merged" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.8" } }, "nbformat": 4, "nbformat_minor": 2 }