{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Analyze permutate metrics" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": true }, "outputs": [], "source": [ "library(dplyr, warn=FALSE)" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": true }, "outputs": [], "source": [ "# Must manually set\n", "multiplier = 4" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
abbrev | attempts | complete | cumulative_attempts | duplicate | excluded | metaedge | same_edge | self_loop | unchanged | undirected_duplicate | permutation | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | AuG | 39140 | 0.4 | 39139 | 0.42001 | 0 | anatomy - upregulates - gene | 0 | 0 | 0.65393 | 0 | 0 |
2 | AuG | 39139 | 0.8 | 78278 | 0.42671 | 0 | anatomy - upregulates - gene | 5.11e-05 | 0 | 0.46858 | 0 | 0 |