{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Run stargeo queries for hetio-ind diseases" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": false }, "outputs": [], "source": [ "import logging\n", "import os\n", "import gzip\n", "\n", "import pandas\n", "import easydict\n", "\n", "import starapi.analysis\n", "import starapi.conf" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": false }, "outputs": [], "source": [ "starapi.analysis.logger.propagate = False\n", "starapi.conf.configure('data')" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/html": [ "
\n", " | slim_id | \n", "slim_name | \n", "case_query | \n", "control_query | \n", "
---|---|---|---|---|
0 | \n", "DOID:0050156 | \n", "idiopathic pulmonary fibrosis | \n", "IPF == 'IPF' | \n", "IPF_control == 'IPF_control' | \n", "
1 | \n", "DOID:0050741 | \n", "alcohol dependence | \n", "alcoholism == 'alcoholism' | \n", "alcoholism_control == 'alcoholism_control' | \n", "
2 | \n", "DOID:0050742 | \n", "nicotine dependence | \n", "Smoker == 'Smoker' | \n", "Smoker_control == 'Smoker_control' | \n", "
3 | \n", "DOID:1024 | \n", "leprosy | \n", "borderline_leprosy == 'borderline_leprosy' or ... | \n", "leprosy_control == 'leprosy_control' | \n", "
4 | \n", "DOID:10283 | \n", "prostate cancer | \n", "PC == 'PC' | \n", "PC_control == 'PC_control' or PC_tissue_contro... | \n", "