{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# gathergrams - display gather results" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "%matplotlib inline\n", "import pylab\n", "import numpy\n", "import pandas as pd" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | intersect_bp | \n", "f_orig_query | \n", "f_match | \n", "f_unique_to_query | \n", "f_unique_weighted | \n", "average_abund | \n", "median_abund | \n", "std_abund | \n", "name | \n", "filename | \n", "md5 | \n", "f_match_orig | \n", "unique_intersect_bp | \n", "gather_result_rank | \n", "remaining_bp | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", "9323000 | \n", "0.024885 | \n", "0.977254 | \n", "0.024885 | \n", "0.008649 | \n", "6.831814 | \n", "6.0 | \n", "5.847358 | \n", "GCA_000013645 | \n", "all-gather-genomes.sbt.zip | \n", "ee9cb05018009af43429e83e7d502a0a | \n", "0.977254 | \n", "9323000 | \n", "0 | \n", "365320000 | \n", "
1 | \n", "7288000 | \n", "0.019453 | \n", "0.999040 | \n", "0.019453 | \n", "0.023517 | \n", "23.763035 | \n", "18.0 | \n", "29.637611 | \n", "GCA_000009705 | \n", "all-gather-genomes.sbt.zip | \n", "264cfdad44548ad96c4a24b6a514a877 | \n", "0.999040 | \n", "7288000 | \n", "1 | \n", "358032000 | \n", "
2 | \n", "7039000 | \n", "0.018789 | \n", "0.999858 | \n", "0.018789 | \n", "0.089562 | \n", "93.700242 | \n", "92.0 | \n", "27.877040 | \n", "GCA_000196115 | \n", "all-gather-genomes.sbt.zip | \n", "7141c3fbf206734950d13cadba0bf46c | \n", "0.999858 | \n", "7039000 | \n", "2 | \n", "350993000 | \n", "
3 | \n", "6604000 | \n", "0.017627 | \n", "0.999697 | \n", "0.017627 | \n", "0.014621 | \n", "16.304058 | \n", "16.0 | \n", "6.636986 | \n", "GCA_000018565 | \n", "all-gather-genomes.sbt.zip | \n", "5165e0f27ae96c8a78da00c2d30a8e36 | \n", "0.999697 | \n", "6604000 | \n", "3 | \n", "344389000 | \n", "