Dicty Anatomy Ontology (DDANAT)
type: Ontology
description: A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum.
license: http://creativecommons.org/publicdomain/zero/1.0/
auto-generated-by: OBO-Edit 2.2
date: 01:07:2020 16:45
default-namespace: Dictyostelium_discoideum_anatomy
has_obo_format_version: 1.2
saved-by: pfey

definition
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000050
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: part_of
shorthand: part_of

develops_from
type: ObjectProperty
database_cross_reference: RO:0002202
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: develops_from
shorthand: develops_from

DDANAT_0000001
type: Class
IAO_0000231: IAO_0000227
IAO_0100001: Dictyostelium discoideum anatomical structure
deprecated: true

vegetative amoebae
type: Class
subclass of: Dictyostelium discoideum single cell organism
subclass of: Restriction
  on property: part of
  some values from: stream
subclass of: Restriction
  on property: develops_from
  some values from: spore
definition: Unicellular haploid myxamoebae that feeds on bacteria by phagocytosis and divides by binary fission. The size of vegetative cells range from 12-20 microns by 8-12 microns. The cells exhibit a roughly rounded but rather irregular shape.
has_broad_synonym: amoebae
has_exact_synonym: vegetative cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000002

Axiom
annotated source: vegetative amoebae
annotated property: definition
annotated target: Unicellular haploid myxamoebae that feeds on bacteria by phagocytosis and divides by binary fission. The size of vegetative cells range from 12-20 microns by 8-12 microns. The cells exhibit a roughly rounded but rather irregular shape.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

aggregation territory
type: Class
subclass of: whole organism
definition: Area covered by a group of chemotactic cells converging toward the same aggregation center. Can reach a diameter of up to 1 cm.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000003

Axiom
annotated source: aggregation territory
annotated property: definition
annotated target: Area covered by a group of chemotactic cells converging toward the same aggregation center. Can reach a diameter of up to 1 cm.
database_cross_reference: DDB:pg
database_cross_reference: PMID:14458213
database_cross_reference: PMID:20268085

loose aggregate
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: aggregation territory
definition: First adherent mass of cells observed during development, relatively flat with indistinct borders.
has_exact_synonym: loose mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000004

Axiom
annotated source: loose aggregate
annotated property: definition
annotated target: First adherent mass of cells observed during development, relatively flat with indistinct borders.
database_cross_reference: DDB:pg

mound
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: loose aggregate
definition: Hemispherical structure composed of post-aggregative cells that are undergoing differentiation.
has_broad_synonym: pseudoplasmodium
has_exact_synonym: tight aggregate
has_exact_synonym: tight mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000005

Axiom
annotated source: mound
annotated property: definition
annotated target: Hemispherical structure composed of post-aggregative cells that are undergoing differentiation.
database_cross_reference: DDB:pg
database_cross_reference: PMID:20268085

Axiom
annotated source: mound
annotated property: has_broad_synonym
annotated target: pseudoplasmodium
database_cross_reference: PMID:18366659

tipped mound
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: mound
definition: Hemispherical structure composed of post-aggregative cells that are undergoing differentiation and that have formed a tip.
has_broad_synonym: pseudoplasmodium
has_exact_synonym: tipped aggregate
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000006

Axiom
annotated source: tipped mound
annotated property: definition
annotated target: Hemispherical structure composed of post-aggregative cells that are undergoing differentiation and that have formed a tip.
database_cross_reference: DDB:pg
database_cross_reference: PMID:20268085

Axiom
annotated source: tipped mound
annotated property: has_exact_synonym
annotated target: tipped aggregate
database_cross_reference: PMID:7553878

standing slug
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: tipped mound
definition: Cylindrical structure that is formed by elongation of the mound under the control of the tip. The elongating tip is called the first finger.
has_broad_synonym: pseudoplasmodium
database_cross_reference: ISBN:0521583640
has_exact_synonym: finger
has_narrow_synonym: first finger
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000007
comment: Synonym from Kessin book p. 166.

Axiom
annotated source: standing slug
annotated property: definition
annotated target: Cylindrical structure that is formed by elongation of the mound under the control of the tip. The elongating tip is called the first finger.
database_cross_reference: DDB:pg
database_cross_reference: PMID:18366659

migratory slug
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: standing slug
definition: When the conditions are not optimal for the completion of development, the standing slug bends from a vertical position to a horizontal position, producing a migratory that slug has the ability to migrate towards more favorable environmental conditions. The slug is cylindrical in shape with a rounded, tapering region at its anterior end that is raised with respect to the substratum. It usually measures between 0.8 to 1.2 mm in length with a diameter of 0.15 to 0.25 mm. Slugs sense and respond to light, temperature and acidity, and do not enter culmination until the conditions are optimal. The slug can move at a speed of 0.5 to 2 mm per hour. A trail of slime is deposited on the surface during migration.
has_broad_synonym: pseudoplasmodium
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000008

Axiom
annotated source: migratory slug
annotated property: definition
annotated target: When the conditions are not optimal for the completion of development, the standing slug bends from a vertical position to a horizontal position, producing a migratory that slug has the ability to migrate towards more favorable environmental conditions. The slug is cylindrical in shape with a rounded, tapering region at its anterior end that is raised with respect to the substratum. It usually measures between 0.8 to 1.2 mm in length with a diameter of 0.15 to 0.25 mm. Slugs sense and respond to light, temperature and acidity, and do not enter culmination until the conditions are optimal. The slug can move at a speed of 0.5 to 2 mm per hour. A trail of slime is deposited on the surface during migration.
database_cross_reference: DDB:pg
database_cross_reference: PMID:2513127
database_cross_reference: PMID:8223266

Axiom
annotated source: migratory slug
annotated property: has_broad_synonym
annotated target: pseudoplasmodium
database_cross_reference: PMID:18366659

early culminant
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: standing slug
definition: Structure formed after the arrest of slug migration formed when cells of the posterior region of the slug move under the tip. Stalk tube formation is initiated at this stage.
has_broad_synonym: culminant
has_broad_synonym: pseudoplasmodium
has_narrow_synonym: mexican hat
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000009

Axiom
annotated source: early culminant
annotated property: definition
annotated target: Structure formed after the arrest of slug migration formed when cells of the posterior region of the slug move under the tip. Stalk tube formation is initiated at this stage.
database_cross_reference: DDB:pg
database_cross_reference: PMID:18366659
database_cross_reference: PMID:1879341

Axiom
annotated source: early culminant
annotated property: has_broad_synonym
annotated target: pseudoplasmodium
database_cross_reference: PMID:18366659

mid culminant
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: early culminant
definition: Structure in which stalk tube formation has progressed down the prespore zone. Basal disc formation begins at this stage, with the migration of pstA and pstB cells to the lower part of the culminant to form the basal disc.
has_broad_synonym: culminant
has_broad_synonym: pseudoplasmodium
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000010

Axiom
annotated source: mid culminant
annotated property: definition
annotated target: Structure in which stalk tube formation has progressed down the prespore zone. Basal disc formation begins at this stage, with the migration of pstA and pstB cells to the lower part of the culminant to form the basal disc.
database_cross_reference: DDB:pg
database_cross_reference: PMID:9799430

Axiom
annotated source: mid culminant
annotated property: has_broad_synonym
annotated target: pseudoplasmodium
database_cross_reference: PMID:18366659

late culminant
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: mid culminant
definition: Structure in which stalk tube formation has progressed down to the basal disc. The sorogen ascents up the stalk to it apical position during this stage. Terminal differentiation occurs at this stage: death of the stalk cells and encapsulation of the spores.
has_broad_synonym: culminant
database_cross_reference: ISBN:0521583640
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: pseudoplasmodium
id: DDANAT:0000011
comment: Kessin book p. 201.

Axiom
annotated source: late culminant
annotated property: definition
annotated target: Structure in which stalk tube formation has progressed down to the basal disc. The sorogen ascents up the stalk to it apical position during this stage. Terminal differentiation occurs at this stage: death of the stalk cells and encapsulation of the spores.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341

Axiom
annotated source: late culminant
annotated property: has_related_synonym
annotated target: pseudoplasmodium
database_cross_reference: PMID:18366659

fruiting body
type: Class
subclass of: whole organism
subclass of: Restriction
  on property: develops_from
  some values from: late culminant
definition: Dicty asexual organism which is terminally differentiated and consists of a long stalk on top of which sits the sorus that contains spores. The mature fruiting body measures between 1.5 to 3 mm in height.
database_cross_reference: ISBN:0521583640
has_exact_synonym: sorocarp
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000012
comment: Synonym from Kessin book p. 12-13.

Axiom
annotated source: fruiting body
annotated property: definition
annotated target: Dicty asexual organism which is terminally differentiated and consists of a long stalk on top of which sits the sorus that contains spores. The mature fruiting body measures between 1.5 to 3 mm in height.
database_cross_reference: DDB:18366659
database_cross_reference: DDB:pg

stream
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: aggregation territory
definition: Macroscopic appearance of groups of chemotactic cells orienting themselves in a head to tail fashion as they are migrating in the direction of the chemotactic stimulus to form aggregates.
has_exact_synonym: pseudoplasmodial stream
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000013

Axiom
annotated source: stream
annotated property: definition
annotated target: Macroscopic appearance of groups of chemotactic cells orienting themselves in a head to tail fashion as they are migrating in the direction of the chemotactic stimulus to form aggregates.
database_cross_reference: DDB:18366659
database_cross_reference: DDB:pg

surface sheath of the loose aggregate
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: develops_from
  some values from: loose aggregate
definition: Acellular material composed of polysaccharides and proteins, formed during late aggregation and that holds the cell mass together in the aggregate.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000014

Axiom
annotated source: surface sheath of the loose aggregate
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins, formed during late aggregation and that holds the cell mass together in the aggregate.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

surface sheath of the mound
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: mound
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the loose aggregate
definition: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the mound.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000015

Axiom
annotated source: surface sheath of the mound
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the mound.
database_cross_reference: DDB:pg
database_cross_reference: PMID:557037

prestalk region of the tipped mound
type: Class
subclass of: prestalk region
subclass of: Restriction
  on property: part of
  some values from: tipped mound
subclass of: Restriction
  on property: develops_from
  some values from: mound
definition: Elongated protusion of the tipped mound located on top of the cell mass that contains pstA cells flanked by pstO cells (expressing ecmA from the proximal and the distal part of its promoter, respectively).
database_cross_reference: PMID:10642783
database_cross_reference: PMID:2513127
has_exact_synonym: pst region of the tipped mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: apical tip of the tipped mound
id: DDANAT:0000016

Axiom
annotated source: prestalk region of the tipped mound
annotated property: definition
annotated target: Elongated protusion of the tipped mound located on top of the cell mass that contains pstA cells flanked by pstO cells (expressing ecmA from the proximal and the distal part of its promoter, respectively).
database_cross_reference: DDB:pg

prespore region of the tipped mound
type: Class
subclass of: prespore region
subclass of: Restriction
  on property: part of
  some values from: tipped mound
subclass of: Restriction
  on property: develops_from
  some values from: mound
definition: Region of the tipped mound mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB.
has_exact_synonym: psp region of the tipped mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000017

Axiom
annotated source: prespore region of the tipped mound
annotated property: definition
annotated target: Region of the tipped mound mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB.
database_cross_reference: DDB:pg

surface sheath of the tipped mound
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: tipped mound
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the mound
definition: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the tipped mound.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000018

Axiom
annotated source: surface sheath of the tipped mound
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the tipped mound.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

prestalk region of the standing slug
type: Class
subclass of: prestalk region
subclass of: Restriction
  on property: part of
  some values from: standing slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the tipped mound
definition: Elongated protrusion of the standing slug located on top of the cell mass that contains pstA cells flanked by pstO cells (expressing ecmA from the proximal and the distal part of its promoter, respectively).
database_cross_reference: PMID:10642783
database_cross_reference: PMID:2513127
has_exact_synonym: pst region of the standing slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000019

Axiom
annotated source: prestalk region of the standing slug
annotated property: definition
annotated target: Elongated protrusion of the standing slug located on top of the cell mass that contains pstA cells flanked by pstO cells (expressing ecmA from the proximal and the distal part of its promoter, respectively).
database_cross_reference: DDB:pg

tip-organizer of the standing slug
type: Class
subclass of: tip-organizer
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: tip-organizer of the tipped mound
definition: Part of the prestalk region of the standing slug that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip of the standing slug
id: DDANAT:0000020

Axiom
annotated source: tip-organizer of the standing slug
annotated property: definition
annotated target: Part of the prestalk region of the standing slug that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
database_cross_reference: DDB:pg

prestalk A region of the standing slug
type: Class
subclass of: prestalk A region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the tipped mound
definition: Most apical region of the prestalk zone of the standing slug characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: ISBN:0521583640
has_exact_synonym: pstA region of the standing slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000021
comment: See p. 146 Kessin book.

Axiom
annotated source: prestalk A region of the standing slug
annotated property: definition
annotated target: Most apical region of the prestalk zone of the standing slug characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

prestalk O region of the standing slug
type: Class
subclass of: prestalk O region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the tipped mound
definition: Area of the prestalk zone of the standing slug located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: ISBN:0521583640
has_exact_synonym: pstO region of the standing slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000022
comment: See p. 146 Kessin book.

Axiom
annotated source: prestalk O region of the standing slug
annotated property: definition
annotated target: Area of the prestalk zone of the standing slug located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

prestalk AB core region of the standing slug
type: Class
subclass of: prestalk AB core region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the tipped mound
definition: Cone-shaped area of the prestalk zone of the standing slug that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: ISBN:0521583640
has_exact_synonym: prestalk AB region of the standing slug
has_narrow_synonym: pstAB region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000023
comment: See p. 146 Kessin book.

Axiom
annotated source: prestalk AB core region of the standing slug
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone of the standing slug that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

prespore region of the standing slug
type: Class
subclass of: prespore region
subclass of: Restriction
  on property: part of
  some values from: standing slug
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the tipped mound
definition: Region of the standing slug mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
has_exact_synonym: psp region of the standing slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000024

Axiom
annotated source: prespore region of the standing slug
annotated property: definition
annotated target: Region of the standing slug mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
database_cross_reference: DDB:pg

basal region of the standing slug
type: Class
subclass of: basal region
subclass of: Restriction
  on property: part of
  some values from: standing slug
subclass of: Restriction
  on property: develops_from
  some values from: tipped mound
definition: Region of the standing slug in contact with the substratum and composed of prestalk B cells.
has_exact_synonym: base of the standing slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000025

Axiom
annotated source: basal region of the standing slug
annotated property: definition
annotated target: Region of the standing slug in contact with the substratum and composed of prestalk B cells.
database_cross_reference: DDB:pg

peripheral layer of the standing slug
type: Class
subclass of: peripheral layer
subclass of: Restriction
  on property: part of
  some values from: standing slug
subclass of: Restriction
  on property: develops_from
  some values from: standing slug
definition: Outer-most cell layer surrounding the standing slug. The peripheral layer is composed of electron-dense cells that are connected to each other, forming a coherent tissue.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000026
comment: Characterisation of an epithelium-like layer of cells in the multicellular Dictyostelium discoideum slug. M Fuchs, MK Jones, KL Williams - Journal of Cell Science, 1993. ISSN:0021-9533. not indexed in PubMed.

Axiom
annotated source: peripheral layer of the standing slug
annotated property: definition
annotated target: Outer-most cell layer surrounding the standing slug. The peripheral layer is composed of electron-dense cells that are connected to each other, forming a coherent tissue.
database_cross_reference: DDB:pg
database_cross_reference: ISSN:0021-9533

surface sheath of the standing slug
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: standing slug
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the tipped mound
definition: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the standing slug.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000027

Axiom
annotated source: surface sheath of the standing slug
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the standing slug.
database_cross_reference: DDB:pg
database_cross_reference: PMID:557037

prestalk region of the migratory slug
type: Class
subclass of: prestalk region
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the standing slug
definition: The prestalk region of the migratory slug is located at the anterior of the organism. It consists of about one quarter of the cells.
has_exact_synonym: pst region of the migratory slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: anterior region of the migratory slug
id: DDANAT:0000028

Axiom
annotated source: prestalk region of the migratory slug
annotated property: definition
annotated target: The prestalk region of the migratory slug is located at the anterior of the organism. It consists of about one quarter of the cells.
database_cross_reference: DDB:pg

tip-organizer of the migratory slug
type: Class
subclass of: tip-organizer
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: tip-organizer of the standing slug
definition: Part of the prestalk region of the migratory slug that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism. The tip guides the movement of the organism during migration.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip of the migratory slug
id: DDANAT:0000029

Axiom
annotated source: tip-organizer of the migratory slug
annotated property: definition
annotated target: Part of the prestalk region of the migratory slug that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism. The tip guides the movement of the organism during migration.
database_cross_reference: DDB:pg
database_cross_reference: PMID:18366659
database_cross_reference: PMID:987586

prestalk A region of the migratory slug
type: Class
subclass of: prestalk A region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk A region of the standing slug
definition: Anterior-most region of the prestalk zone of the migratory slug and characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:10611970
has_exact_synonym: prestalk AO region of the migratory slug
has_exact_synonym: pstA region of the migratory slug
has_exact_synonym: pstAO region of the migratory slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000030
comment: Synonym from Kessin book p. 175.

Axiom
annotated source: prestalk A region of the migratory slug
annotated property: definition
annotated target: Anterior-most region of the prestalk zone of the migratory slug and characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

prestalk O region of the migratory slug
type: Class
subclass of: prestalk O region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk O region of the standing slug
definition: Area of the prestalk zone of the migratory slug located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: ISBN:0521583640
has_exact_synonym: pstO region of the migratory slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000031
comment: See p. 146 Kessin book.

Axiom
annotated source: prestalk O region of the migratory slug
annotated property: definition
annotated target: Area of the prestalk zone of the migratory slug located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

prestalk AB core region of the migratory slug
type: Class
subclass of: prestalk AB core region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: prestalk AB core region of the standing slug
definition: Cone-shaped area of the prestalk zone of the migratory slug that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:8223266
has_exact_synonym: prestalk AB region of the migratory slug
has_exact_synonym: pstAB region of the migratory slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000032
comment: See Kessin book p. 146.

Axiom
annotated source: prestalk AB core region of the migratory slug
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone of the migratory slug that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

prespore region of the migratory slug
type: Class
subclass of: prespore region
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the standing slug
definition: Region of the migratory slug composed mostly of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
has_broad_synonym: psp region of the migratory slug
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000033

Axiom
annotated source: prespore region of the migratory slug
annotated property: definition
annotated target: Region of the migratory slug composed mostly of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
database_cross_reference: DDB:pg

posterior region of the migratory slug
type: Class
subclass of: posterior region
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: basal region of the standing slug
definition: Region located at the very posterior of the migratory slug that contains pstB cells (rearguard cells). These cells form the basal disc in the mature fruiting body.
has_broad_synonym: rearguard region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000034

Axiom
annotated source: posterior region of the migratory slug
annotated property: definition
annotated target: Region located at the very posterior of the migratory slug that contains pstB cells (rearguard cells). These cells form the basal disc in the mature fruiting body.
database_cross_reference: DDB:pg

peripheral layer of the migratory slug
type: Class
subclass of: peripheral layer
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: peripheral layer of the standing slug
definition: Outer-most cell layer surrounding the migratory slug. The peripheral layer is composed of electron-dense cells that are connected to each other, forming a coherent tissue.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000035
comment: Characterisation of an epithelium-like layer of cells in the multicellular Dictyostelium discoideum slug. M Fuchs, MK Jones, KL Williams - Journal of Cell Science, 1993. ISSN:0021-9533. not indexed in PubMed.

Axiom
annotated source: peripheral layer of the migratory slug
annotated property: definition
annotated target: Outer-most cell layer surrounding the migratory slug. The peripheral layer is composed of electron-dense cells that are connected to each other, forming a coherent tissue.
database_cross_reference: DDB:pg
database_cross_reference: ISSN:0021-9533

surface sheath of the migratory slug
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the standing slug
definition: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the migratory slug.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000036

Axiom
annotated source: surface sheath of the migratory slug
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the migratory slug.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

prestalk region of the early culminant
type: Class
subclass of: prestalk region
subclass of: Restriction
  on property: part of
  some values from: early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the standing slug
definition: The prestalk region of the early culminant is located at the most apical part of the organism. It consists of about one quarter of the cells.
has_exact_synonym: pst region of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000037

Axiom
annotated source: prestalk region of the early culminant
annotated property: definition
annotated target: The prestalk region of the early culminant is located at the most apical part of the organism. It consists of about one quarter of the cells.
database_cross_reference: DDB:pg

prestalk A region of the early culminant
type: Class
subclass of: prestalk A region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk A region of the standing slug
definition: Anterior-most region of the prestalk zone of the early culminant characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
has_exact_synonym: pstA region of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000038

Axiom
annotated source: prestalk A region of the early culminant
annotated property: definition
annotated target: Anterior-most region of the prestalk zone of the early culminant characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

prestalk O region of the early culminant
type: Class
subclass of: prestalk O region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk A region of the standing slug
definition: Area of the prestalk zone of the early culminant located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
has_exact_synonym: pstO region of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000039

Axiom
annotated source: prestalk O region of the early culminant
annotated property: definition
annotated target: Area of the prestalk zone of the early culminant located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

prestalk AB core region of the early culminant
type: Class
subclass of: prestalk AB core region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk AB core region of the standing slug
definition: Cone-shaped area of the prestalk zone of the early culminant that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
has_exact_synonym: prestalk AB region of the early culminant
has_exact_synonym: pstAB region of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000040

Axiom
annotated source: prestalk AB core region of the early culminant
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone of the early culminant that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

prespore region of the early culminant
type: Class
subclass of: prespore region
subclass of: Restriction
  on property: part of
  some values from: early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the standing slug
definition: Region of the early culminant mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
has_exact_synonym: psp region of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000041

Axiom
annotated source: prespore region of the early culminant
annotated property: definition
annotated target: Region of the early culminant mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
database_cross_reference: DDB:pg

upper cup region of the early culminant
type: Class
subclass of: upper cup
subclass of: Restriction
  on property: part of
  some values from: prespore region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the early culminant
definition: Region of the prespore zone of the early culminant that borders the prestalk region. This region gives rise to the upper cup of the fruiting body.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: prespore/anterior region of the early culminant
id: DDANAT:0000042

Axiom
annotated source: upper cup region of the early culminant
annotated property: definition
annotated target: Region of the prespore zone of the early culminant that borders the prestalk region. This region gives rise to the upper cup of the fruiting body.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341
database_cross_reference: PMID:8016318

stalk tube of the early culminant
type: Class
subclass of: stalk tube
subclass of: Restriction
  on property: part of
  some values from: prespore region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: early culminant
definition: Open, cylindrical tube of the early culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
has_broad_synonym: sorophore sheath
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000043

Axiom
annotated source: stalk tube of the early culminant
annotated property: definition
annotated target: Open, cylindrical tube of the early culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:11130075
database_cross_reference: PMID:9799430

prespore/base region of the early culminant
type: Class
subclass of: basal region
subclass of: Restriction
  on property: part of
  some values from: prespore region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the early culminant
definition: Region of the prespore zone of the early culminant that borders the base. This region gives rise to the lower cup of the fruiting body.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000044

Axiom
annotated source: prespore/base region of the early culminant
annotated property: definition
annotated target: Region of the prespore zone of the early culminant that borders the base. This region gives rise to the lower cup of the fruiting body.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341

basal region of the early culminant
type: Class
subclass of: basal region
subclass of: Restriction
  on property: part of
  some values from: early culminant
subclass of: Restriction
  on property: develops_from
  some values from: basal region of the standing slug
definition: Region of the early culminant located at the closest to the substratum composed of pstB cells that originated from rearguard cells.
database_cross_reference: PMID:10611970
has_exact_synonym: base of the early culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000045

Axiom
annotated source: basal region of the early culminant
annotated property: definition
annotated target: Region of the early culminant located at the closest to the substratum composed of pstB cells that originated from rearguard cells.
database_cross_reference: DDB:pg

peripheral layer of the early culminant
type: Class
subclass of: peripheral layer
subclass of: Restriction
  on property: part of
  some values from: early culminant
subclass of: Restriction
  on property: develops_from
  some values from: peripheral layer of the standing slug
definition: Layer surrounding the mexican hat and composed of an electron-dense cell type.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000046
comment: Kessin book p. 195.

Axiom
annotated source: peripheral layer of the early culminant
annotated property: definition
annotated target: Layer surrounding the mexican hat and composed of an electron-dense cell type.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0521583640

surface sheath of the early culminant
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: early culminant
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the migratory slug
definition: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the early culminant.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: extracellular matrix (ECM)
id: DDANAT:0000047

Axiom
annotated source: surface sheath of the early culminant
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins that holds the cell mass together in the early culminant.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

prestalk region of the mid culminant
type: Class
subclass of: prestalk region
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk region of the early culminant
definition: The prestalk region of the mid culminant is located at the most apical part of the organism. It consists of about one quarter of the cells.
has_exact_synonym: pst region of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000048

Axiom
annotated source: prestalk region of the mid culminant
annotated property: definition
annotated target: The prestalk region of the mid culminant is located at the most apical part of the organism. It consists of about one quarter of the cells.
database_cross_reference: DDB:pg

prestalk A region of the mid culminant
type: Class
subclass of: prestalk A region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk A region of the early culminant
definition: Anterior-most region of the prestalk zone of the mid culminant characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: PMID:2513127
has_exact_synonym: pstA region of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000049

Axiom
annotated source: prestalk A region of the mid culminant
annotated property: definition
annotated target: Anterior-most region of the prestalk zone of the mid culminant characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

prestalk O region of the mid culminant
type: Class
subclass of: prestalk O region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk O region of the early culminant
definition: Area of the prestalk zone of the mid culminant located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
has_exact_synonym: pstO region of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000050

Axiom
annotated source: prestalk O region of the mid culminant
annotated property: definition
annotated target: Area of the prestalk zone of the mid culminant located posterior to the prestalk A region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

prestalk AB core region of the mid culminant
type: Class
subclass of: prestalk AB core region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk AB core region of the early culminant
definition: Cone-shaped area of the prestalk zone of the mid culminant that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
has_exact_synonym: prestalk AB region of the mid culminant
has_exact_synonym: pstAB region of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000051

Axiom
annotated source: prestalk AB core region of the mid culminant
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone of the mid culminant that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

stalk of the mid culminant
type: Class
subclass of: stalk
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prestalk AB core region of the early culminant
definition: Tubular structure of the mid culminant that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
database_cross_reference: ISBN:0521583640
has_exact_synonym: sorophore of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000052
comment: Synonym from Kessin book p. 12-13; Kessin book p. 193.

Axiom
annotated source: stalk of the mid culminant
annotated property: definition
annotated target: Tubular structure of the mid culminant that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
database_cross_reference: DDB:pg

stalk tube of the mid culminant
type: Class
subclass of: stalk tube
subclass of: Restriction
  on property: part of
  some values from: stalk of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: stalk tube of the early culminant
definition: Open, cylindrical tube of the mid culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
has_broad_synonym: sorophore sheath
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000053

Axiom
annotated source: stalk tube of the mid culminant
annotated property: definition
annotated target: Open, cylindrical tube of the mid culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:11130075
database_cross_reference: PMID:9799430

prespore region of the mid culminant
type: Class
subclass of: prespore region
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the early culminant
definition: Region of the mid culminant mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
has_broad_synonym: psp region of the mid culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000054

Axiom
annotated source: prespore region of the mid culminant
annotated property: definition
annotated target: Region of the mid culminant mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
database_cross_reference: DDB:pg

upper cup region of the mid culminant
type: Class
subclass of: upper cup
subclass of: Restriction
  on property: part of
  some values from: prespore region of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: upper cup region of the early culminant
definition: Region of the prespore zone of the mid culminant that borders the prestalk region.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: prespore/anterior region of the mid culminant
id: DDANAT:0000055

Axiom
annotated source: upper cup region of the mid culminant
annotated property: definition
annotated target: Region of the prespore zone of the mid culminant that borders the prestalk region.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8016318

prespore/base region of the mid culminant
type: Class
subclass of: basal region
subclass of: Restriction
  on property: part of
  some values from: prespore region of the mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore/base region of the early culminant
definition: Region of the prespore zone of the mid culminant that borders the base.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000056

Axiom
annotated source: prespore/base region of the mid culminant
annotated property: definition
annotated target: Region of the prespore zone of the mid culminant that borders the base.
database_cross_reference: DDB:pg

basal disc of the mid culminant
type: Class
subclass of: basal disc
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: basal region of the early culminant
definition: Region located of the mid culminant located closest to the substratum and composed of pst cells (rearguard cells).
database_cross_reference: PMID:10611970
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000057

Axiom
annotated source: basal disc of the mid culminant
annotated property: definition
annotated target: Region located of the mid culminant located closest to the substratum and composed of pst cells (rearguard cells).
database_cross_reference: DDB:pg
database_cross_reference: PMID:8631253

peripheral layer of the mid culminant
type: Class
subclass of: peripheral layer
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: peripheral layer of the early culminant
definition: Layer surrounding the mid culminant and composed of an electron-dense cell type.
database_cross_reference: ISBN:0521583640
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000058
comment: Kessin book p. 195.

Axiom
annotated source: peripheral layer of the mid culminant
annotated property: definition
annotated target: Layer surrounding the mid culminant and composed of an electron-dense cell type.
database_cross_reference: DDB:pg

stalk of the late culminant
type: Class
subclass of: stalk
subclass of: Restriction
  on property: part of
  some values from: late culminant
subclass of: Restriction
  on property: develops_from
  some values from: stalk of the mid culminant
definition: Tubular structure of the late culminant that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
database_cross_reference: ISBN:0521583640
has_exact_synonym: sorophore of the late culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000059
comment: Synonym from Kessin book p. 12-13, Kessin book p. 193.

Axiom
annotated source: stalk of the late culminant
annotated property: definition
annotated target: Tubular structure of the late culminant that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
database_cross_reference: DDB:pg

stalk tube of the late culminant
type: Class
subclass of: stalk tube
subclass of: Restriction
  on property: part of
  some values from: stalk of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: stalk tube of the mid culminant
definition: Open, cylindrical tube of the late culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
has_broad_synonym: sorophore sheath
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000060

Axiom
annotated source: stalk tube of the late culminant
annotated property: definition
annotated target: Open, cylindrical tube of the late culminant composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:11130075
database_cross_reference: PMID:9799430

sorus of the late culminant
type: Class
subclass of: sorus
subclass of: Restriction
  on property: part of
  some values from: late culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore region of the mid culminant
definition: Ovoid structure of the late culminant supported by the stalk and that contains the spores.
has_exact_synonym: spore head of the late culminant
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000061

Axiom
annotated source: sorus of the late culminant
annotated property: definition
annotated target: Ovoid structure of the late culminant supported by the stalk and that contains the spores.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0198529171

apical disc of the late culminant
type: Class
subclass of: apical disc
subclass of: Restriction
  on property: part of
  some values from: sorus of the late culminant
definition: Most apical structure of the late culminant. Composed of cells that express the prestalk markers ecmA, ecmB and staB.
database_cross_reference: ISBN:0521583640
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000062
comment: Kessin book p. 193.

Axiom
annotated source: apical disc of the late culminant
annotated property: definition
annotated target: Most apical structure of the late culminant. Composed of cells that express the prestalk markers ecmA, ecmB and staB.
database_cross_reference: DDB:pg
database_cross_reference: PMID:9203345

upper cup of the late culminant
type: Class
subclass of: upper cup
subclass of: Restriction
  on property: part of
  some values from: sorus of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: upper cup region of the mid culminant
definition: Region of the late culminant located above the spore mass and composed of anterior-like cells.
database_cross_reference: PMID:1879341
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000063

Axiom
annotated source: upper cup of the late culminant
annotated property: definition
annotated target: Region of the late culminant located above the spore mass and composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341
database_cross_reference: PMID:7128927

lower cup of the late culminant
type: Class
subclass of: lower cup
subclass of: Restriction
  on property: part of
  some values from: sorus of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: prespore/base region of the mid culminant
definition: Region of the sorus of the late culminant located at the base of the sorus and composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000064

Axiom
annotated source: lower cup of the late culminant
annotated property: definition
annotated target: Region of the sorus of the late culminant located at the base of the sorus and composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341
database_cross_reference: PMID:7128927

basal disc of the late culminant
type: Class
subclass of: basal disc
subclass of: Restriction
  on property: part of
  some values from: late culminant
subclass of: Restriction
  on property: develops_from
  some values from: basal disc of the mid culminant
definition: Conical-shaped structure of the late culminant that anchors the stalk to the substratum. Composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000065

Axiom
annotated source: basal disc of the late culminant
annotated property: definition
annotated target: Conical-shaped structure of the late culminant that anchors the stalk to the substratum. Composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8631253

inner basal disc of the late culminant
type: Class
subclass of: inner basal disc
subclass of: Restriction
  on property: part of
  some values from: basal disc of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: stalk of the mid culminant
definition: Central portion of the basal disc of the late culminant. Composed of stalk cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000066

Axiom
annotated source: inner basal disc of the late culminant
annotated property: definition
annotated target: Central portion of the basal disc of the late culminant. Composed of stalk cells.
database_cross_reference: DDB:pg

outer basal disc of the late culminant
type: Class
subclass of: outer basal disc
subclass of: Restriction
  on property: part of
  some values from: basal disc of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: basal disc of the mid culminant
definition: Ring of cells at the periphery of the basal disc of the late culminant. Composed of pstB cells (rearguard cells) and other anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000067

Axiom
annotated source: outer basal disc of the late culminant
annotated property: definition
annotated target: Ring of cells at the periphery of the basal disc of the late culminant. Composed of pstB cells (rearguard cells) and other anterior-like cells.
database_cross_reference: DDB:pg

stalk of the fruiting body
type: Class
subclass of: stalk
subclass of: Restriction
  on property: part of
  some values from: fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: stalk of the late culminant
definition: Tubular structure of the fruiting body that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. The stalk of the mature fruiting body is usually 5-15 microns in diameter and between 1.5 to 3 cm in height.
has_exact_synonym: sorophore of the fruiting body
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000068

Axiom
annotated source: stalk of the fruiting body
annotated property: definition
annotated target: Tubular structure of the fruiting body that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. The stalk of the mature fruiting body is usually 5-15 microns in diameter and between 1.5 to 3 cm in height.
database_cross_reference: DDB:pg
database_cross_reference: PMID:565220

stalk tube of the fruiting body
type: Class
subclass of: stalk tube
subclass of: Restriction
  on property: part of
  some values from: stalk of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: stalk tube of the late culminant
definition: Open, cylindrical tube of the fruiting body composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
has_broad_synonym: sorophore sheath
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000069

Axiom
annotated source: stalk tube of the fruiting body
annotated property: definition
annotated target: Open, cylindrical tube of the fruiting body composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
database_cross_reference: DDB:pg
database_cross_reference: PMID:11130075

sorus of the fruiting body
type: Class
subclass of: sorus
subclass of: Restriction
  on property: part of
  some values from: fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: sorus of the late culminant
definition: Structure of the fruiting body supported by the stalk and that contains the spores. The sorus is 125-300 microns in diameter, lemon-shaped, and grayish white to pale yellow in color.
has_exact_synonym: spore head of the fruiting body
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000070

Axiom
annotated source: sorus of the fruiting body
annotated property: definition
annotated target: Structure of the fruiting body supported by the stalk and that contains the spores. The sorus is 125-300 microns in diameter, lemon-shaped, and grayish white to pale yellow in color.
database_cross_reference: DDB:pg

apical disc of the fruiting body
type: Class
subclass of: apical disc
subclass of: Restriction
  on property: part of
  some values from: sorus of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: upper cup of the late culminant
definition: Region of the fruiting body located above the spore mass and composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: upper cup of the fruiting body
id: DDANAT:0000071

Axiom
annotated source: apical disc of the fruiting body
annotated property: definition
annotated target: Region of the fruiting body located above the spore mass and composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341
database_cross_reference: PMID:7128927

lower cup of the fruiting body
type: Class
subclass of: lower cup
subclass of: Restriction
  on property: part of
  some values from: sorus of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: lower cup of the late culminant
definition: Region of the fruiting body located at the base of the sorus and composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000072

Axiom
annotated source: lower cup of the fruiting body
annotated property: definition
annotated target: Region of the fruiting body located at the base of the sorus and composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:1879341
database_cross_reference: PMID:7128927
database_cross_reference: PMID:8631253

basal disc of the fruiting body
type: Class
subclass of: basal disc
subclass of: Restriction
  on property: part of
  some values from: fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: basal disc of the late culminant
definition: Conical-shaped structure of the fruiting body that anchors the stalk to the substratum, around 150 to 400 microns in diameter. Composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000073

Axiom
annotated source: basal disc of the fruiting body
annotated property: definition
annotated target: Conical-shaped structure of the fruiting body that anchors the stalk to the substratum, around 150 to 400 microns in diameter. Composed of anterior-like cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8631253

inner basal disc of the fruiting body
type: Class
subclass of: inner basal disc
subclass of: Restriction
  on property: part of
  some values from: basal disc of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: inner basal disc of the late culminant
definition: Central portion of the basal disc of the fruiting body composed of stalk cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000074

Axiom
annotated source: inner basal disc of the fruiting body
annotated property: definition
annotated target: Central portion of the basal disc of the fruiting body composed of stalk cells.
database_cross_reference: DDB:pg

outer basal disc of the fruiting body
type: Class
subclass of: outer basal disc
subclass of: Restriction
  on property: part of
  some values from: basal disc of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: outer basal disc of the late culminant
definition: Ring of cells at the periphery of the basal disc of the fruiting body composed of pstB cells (rearguard cells) and other anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000075

Axiom
annotated source: outer basal disc of the fruiting body
annotated property: definition
annotated target: Ring of cells at the periphery of the basal disc of the fruiting body composed of pstB cells (rearguard cells) and other anterior-like cells.
database_cross_reference: DDB:pg

slime trail
type: Class
subclass of: acellular anatomical structure
subclass of: Restriction
  on property: part of
  some values from: migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the migratory slug
definition: Acellular material from the surface sheath left behind the migratory slug as it moves. Can be up to 2-3 cm in length.
has_exact_synonym: slime track
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000076

Axiom
annotated source: slime trail
annotated property: definition
annotated target: Acellular material from the surface sheath left behind the migratory slug as it moves. Can be up to 2-3 cm in length.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

surface sheath of the mid culminant
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: mid culminant
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the early culminant
definition: Acellular material composed of polysaccharides and proteins. Covers the basal disc of the mid culminant.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000077

Axiom
annotated source: surface sheath of the mid culminant
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins. Covers the basal disc of the mid culminant.
database_cross_reference: DDB:pg
database_cross_reference: PMID:557037

surface sheath of the late culminant
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: late culminant
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the mid culminant
definition: Acellular material composed of polysaccharides and proteins. In the late culminant, covers only the basal disc.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000078

Axiom
annotated source: surface sheath of the late culminant
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins. In the late culminant, covers only the basal disc.
database_cross_reference: DDB:pg
database_cross_reference: PMID:557037

surface sheath of the fruiting body
type: Class
subclass of: surface sheath
subclass of: Restriction
  on property: part of
  some values from: fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: surface sheath of the late culminant
definition: Acellular material composed of polysaccharides and proteins. In the fruiting body, covers only the basal disc.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000079

Axiom
annotated source: surface sheath of the fruiting body
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins. In the fruiting body, covers only the basal disc.
database_cross_reference: DDB:pg
database_cross_reference: PMID:557037

tip-organizer of the tipped mound
type: Class
subclass of: tip-organizer
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the tipped mound
subclass of: Restriction
  on property: develops_from
  some values from: apex of the mound
definition: Part of the prestalk region of the tipped mound that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip of the tipped mound
id: DDANAT:0000080

Axiom
annotated source: tip-organizer of the tipped mound
annotated property: definition
annotated target: Part of the prestalk region of the tipped mound that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
database_cross_reference: DDB:pg

DDANAT_0000081
type: Class
IAO_0000231: IAO_0000227
IAO_0100001: acellular anatomical structure
deprecated: true

DDANAT_0000082
type: Class
IAO_0000231: IAO_0000227
IAO_0100001: whole organism
deprecated: true

Dictyostelium discoideum single cell organism
type: Class
subclass of: cell
definition: Cell that is an individual member of the species Dictyostelium discoideum.
database_cross_reference: CARO:0000064
has_exact_synonym: D. discoideum single cell organism
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000083

Axiom
annotated source: Dictyostelium discoideum single cell organism
annotated property: definition
annotated target: Cell that is an individual member of the species Dictyostelium discoideum.
database_cross_reference: CARO:MAH
database_cross_reference: DDB:PG

macrocyst
type: Class
subclass of: Dictyostelium discoideum single cell organism
definition: Unicellular diploid organism resulting from the fusion of two cells of opposite mating types.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000084

Axiom
annotated source: macrocyst
annotated property: definition
annotated target: Unicellular diploid organism resulting from the fusion of two cells of opposite mating types.
database_cross_reference: DDB:pg
database_cross_reference: PMID:16592095

DDANAT_0000085
type: Class
IAO_0000231: IAO_0000227
IAO_0100001: subdivision
deprecated: true

prespore region
type: Class
subclass of: subdivision
definition: Region mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
has_exact_synonym: psp region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000086

Axiom
annotated source: prespore region
annotated property: definition
annotated target: Region mostly composed of prespore cells. In addition to prespore cells, the prespore region contains anterior-like cells (ALC) that express ecmA and/or ecmB. The prespore region occupies about three quarters of the organism.
database_cross_reference: DDB:pg

prestalk region
type: Class
subclass of: subdivision
definition: The prestalk region is located at the most apical part of the organism. It consists of about one quarter of the cells.
has_exact_synonym: pst region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000087

Axiom
annotated source: prestalk region
annotated property: definition
annotated target: The prestalk region is located at the most apical part of the organism. It consists of about one quarter of the cells.
database_cross_reference: DDB:pg

prestalk A region
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: prestalk region
definition: Anterior-most region of the prestalk zone characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
has_exact_synonym: pstA region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000088

Axiom
annotated source: prestalk A region
annotated property: definition
annotated target: Anterior-most region of the prestalk zone characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

basal disc
type: Class
subclass of: subdivision
definition: Conical-shaped structure that anchors the stalk to the substratum. Composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000089

Axiom
annotated source: basal disc
annotated property: definition
annotated target: Conical-shaped structure that anchors the stalk to the substratum. Composed of anterior-like cells.
database_cross_reference: DDB:pg

peripheral layer
type: Class
subclass of: subdivision
definition: Layer surrounding the pseudoplasmodium and composed of an electron-dense cell type.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000090

Axiom
annotated source: peripheral layer
annotated property: definition
annotated target: Layer surrounding the pseudoplasmodium and composed of an electron-dense cell type.
database_cross_reference: DDB:pg

prestalk AB core region
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: prestalk region
definition: Cone-shaped area of the prestalk zone that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
has_exact_synonym: prestalk AB region
has_exact_synonym: pstAB region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000091

Axiom
annotated source: prestalk AB core region
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

prestalk O region
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: prestalk region
definition: Area of the prestalk zone located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
has_exact_synonym: pstO region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000092

Axiom
annotated source: prestalk O region
annotated property: definition
annotated target: Area of the prestalk zone located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

stalk
type: Class
subclass of: subdivision
definition: Tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
has_exact_synonym: sorophore
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000093

Axiom
annotated source: stalk
annotated property: definition
annotated target: Tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein.
database_cross_reference: DDB:pg

sorus
type: Class
subclass of: subdivision
definition: Ovoid structure supported by the stalk and that contains the spores.
has_exact_synonym: spore head
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000094

Axiom
annotated source: sorus
annotated property: definition
annotated target: Ovoid structure supported by the stalk and that contains the spores.
database_cross_reference: DDB:pg

peripheral layer cell
type: Class
subclass of: cell
subclass of: Restriction
  on property: part of
  some values from: peripheral layer of the standing slug
subclass of: Restriction
  on property: part of
  some values from: peripheral layer of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: peripheral layer of the early culminant
subclass of: Restriction
  on property: part of
  some values from: peripheral layer of the mid culminant
definition: Electron-dense cell connected to neighboring peripheral layer cells thus forming a coherent tissue around the multicellular organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000095
comment: Characterisation of an epithelium-like layer of cells in the multicellular Dictyostelium discoideum slug. M Fuchs, MK Jones, KL Williams - Journal of Cell Science, 1993. ISSN:0021-9533. not indexed in PubMed.

Axiom
annotated source: peripheral layer cell
annotated property: definition
annotated target: Electron-dense cell connected to neighboring peripheral layer cells thus forming a coherent tissue around the multicellular organism.
database_cross_reference: DDB:pg
database_cross_reference: ISSN:0021-9533

surface sheath
type: Class
subclass of: acellular anatomical structure
definition: Acellular material composed of polysaccharides and proteins, formed during late aggregation and that holds the cell mass together throuhout development.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000096

Axiom
annotated source: surface sheath
annotated property: definition
annotated target: Acellular material composed of polysaccharides and proteins, formed during late aggregation and that holds the cell mass together throuhout development.
database_cross_reference: DDB:pg

stalk tube
type: Class
subclass of: acellular anatomical structure
definition: Open, cylindrical tube that appears during culmination. The stalk tube is composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000097

Axiom
annotated source: stalk tube
annotated property: definition
annotated target: Open, cylindrical tube that appears during culmination. The stalk tube is composed of cellulose and glycoprotein and surrounded by a ring of actin in which stalk cells accumulate.
database_cross_reference: DDB:pg
database_cross_reference: ISBN:0521583640
database_cross_reference: PMID:11130075
database_cross_reference: PMID:9799430

inner basal disc
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: basal disc
definition: Central portion of the basal disc. Composed of stalk cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000098

Axiom
annotated source: inner basal disc
annotated property: definition
annotated target: Central portion of the basal disc. Composed of stalk cells.
database_cross_reference: DDB:pg

outer basal disc
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: basal disc
definition: Ring of cells at the periphery of the basal disc composed of pstB cells (rearguard cells) and other anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000099

Axiom
annotated source: outer basal disc
annotated property: definition
annotated target: Ring of cells at the periphery of the basal disc composed of pstB cells (rearguard cells) and other anterior-like cells.
database_cross_reference: DDB:pg

prestalk A region of the tipped mound
type: Class
subclass of: prestalk A region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the tipped mound
definition: Anterior-most region of the prestalk zone of the tipped mound characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
has_exact_synonym: pstA region of the tipped mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000100

Axiom
annotated source: prestalk A region of the tipped mound
annotated property: definition
annotated target: Anterior-most region of the prestalk zone of the tipped mound characterized by high expression of the ecmA gene directed by the proximal part of its promoter (ecmA promoter).
database_cross_reference: DDB:pg

prestalk AB core region of the tipped mound
type: Class
subclass of: prestalk AB core region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the tipped mound
definition: Cone-shaped area of the prestalk zone of the tipped mound that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
has_exact_synonym: prestalk AB region of the tipped mound
has_narrow_synonym: pstAB region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000101

Axiom
annotated source: prestalk AB core region of the tipped mound
annotated property: definition
annotated target: Cone-shaped area of the prestalk zone of the tipped mound that occupies a core among the pstA region. Cells of the pstAB region express both the ecmA and ecmB genes.
database_cross_reference: DDB:pg

prestalk O region of the tipped mound
type: Class
subclass of: prestalk O region
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the tipped mound
definition: Area of the prestalk zone of the tipped mound located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
has_exact_synonym: pstO region of the tipped mound
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000102

Axiom
annotated source: prestalk O region of the tipped mound
annotated property: definition
annotated target: Area of the prestalk zone of the tipped mound located posterior to the pstA region and characterized by low expression of the ecmA gene directed by the distal part of its promoter (ecmO promoter).
database_cross_reference: DDB:pg

tip-organizer
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: prestalk region
definition: Part of the prestalk region that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip
id: DDANAT:0000103

Axiom
annotated source: tip-organizer
annotated property: definition
annotated target: Part of the prestalk region that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
database_cross_reference: DDB:pg

tip-organizer of the early culminant
type: Class
subclass of: tip-organizer
subclass of: Restriction
  on property: part of
  some values from: prestalk region of the early culminant
subclass of: Restriction
  on property: develops_from
  some values from: tip-organizer of the standing slug
subclass of: Restriction
  on property: develops_from
  some values from: tip-organizer of the migratory slug
definition: Part of the prestalk region of the early culminant that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip of the early culminant
id: DDANAT:0000104

Axiom
annotated source: tip-organizer of the early culminant
annotated property: definition
annotated target: Part of the prestalk region of the early culminant that acts as an organizer, that is, a signalling center that directs the morphological characteristics of the entire organism.
database_cross_reference: DDB:pg

lower cup
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: sorus
definition: Region located at the base of the sorus and composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000105

Axiom
annotated source: lower cup
annotated property: definition
annotated target: Region located at the base of the sorus and composed of anterior-like cells.
database_cross_reference: DDB:pg

apical disc
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: sorus
definition: Most apical structure of the organism.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000106

Axiom
annotated source: apical disc
annotated property: definition
annotated target: Most apical structure of the organism.
database_cross_reference: DDB:pg

upper cup
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: sorus
definition: Region located above the spore mass and composed of anterior-like cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000107

Axiom
annotated source: upper cup
annotated property: definition
annotated target: Region located above the spore mass and composed of anterior-like cells.
database_cross_reference: DDB:pg

posterior region
type: Class
subclass of: subdivision
definition: Region located at the very posterior of the organism that contains pstB cells (rearguard cells). These cells form the basal disc in the mature fruiting body.
has_exact_synonym: rearguard region
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000108

Axiom
annotated source: posterior region
annotated property: definition
annotated target: Region located at the very posterior of the organism that contains pstB cells (rearguard cells). These cells form the basal disc in the mature fruiting body.
database_cross_reference: DDB:pg

apex of the mound
type: Class
subclass of: apex
subclass of: Restriction
  on property: part of
  some values from: mound
definition: Apical region of the mound where cAMP signals originate that trigger positive chemotaxis from pstA and pstO cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000109

Axiom
annotated source: apex of the mound
annotated property: definition
annotated target: Apical region of the mound where cAMP signals originate that trigger positive chemotaxis from pstA and pstO cells.
database_cross_reference: DDB:pg

basal region
type: Class
subclass of: subdivision
definition: Region of the early pseudoplasmodium located at the closest to the substratum composed of pstB cells.
has_exact_synonym: base
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000110

Axiom
annotated source: basal region
annotated property: definition
annotated target: Region of the early pseudoplasmodium located at the closest to the substratum composed of pstB cells.
database_cross_reference: DDB:pg

apex
type: Class
subclass of: subdivision
definition: Apical region of the early plasmodium where cAMP signals originate that trigger positive chemotaxis from pstA and pstO cells.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: tip
id: DDANAT:0000111

Axiom
annotated source: apex
annotated property: definition
annotated target: Apical region of the early plasmodium where cAMP signals originate that trigger positive chemotaxis from pstA and pstO cells.
database_cross_reference: DDB:pg

spore coat
type: Class
subclass of: subdivision
subclass of: Restriction
  on property: part of
  some values from: spore
definition: A tri-layer protective wall around each spore, consisting of secreted proteins, a polysaccharide, and cellulose produced on the cell surface.
created by: pfey
creation date: 2020-07-01T16:29:15Z
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: spore wall
id: DDANAT:0000112

Axiom
annotated source: spore coat
annotated property: definition
annotated target: A tri-layer protective wall around each spore, consisting of secreted proteins, a polysaccharide, and cellulose produced on the cell surface.
database_cross_reference: DDB:pf
database_cross_reference: PMID:12503851
database_cross_reference: PMID:2096020

cell
type: Class
subclass of: Dictyostelium discoideum anatomical structure
definition: Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000401

Axiom
annotated source: cell
annotated property: definition
annotated target: Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
database_cross_reference: CARO:MAH

chemotactic amoeboid cell
type: Class
subclass of: Dictyostelium discoideum single cell organism
subclass of: Restriction
  on property: part of
  some values from: stream
subclass of: Restriction
  on property: develops_from
  some values from: spore
definition: Starved cell that secretes and responds to chemoattractants (cAMP).
has_broad_synonym: amoebae
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000402

Axiom
annotated source: chemotactic amoeboid cell
annotated property: definition
annotated target: Starved cell that secretes and responds to chemoattractants (cAMP).
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

aggregate cell
type: Class
subclass of: cell
subclass of: Restriction
  on property: part of
  some values from: aggregation territory
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: part of
  some values from: mound
subclass of: Restriction
  on property: develops_from
  some values from: chemotactic amoeboid cell
definition: Differentiating cell composing the aggregate that has acquired adhesive properties.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000403

Axiom
annotated source: aggregate cell
annotated property: definition
annotated target: Differentiating cell composing the aggregate that has acquired adhesive properties.
database_cross_reference: DDB:pg

anterior like cell
type: Class
subclass of: cell
subclass of: Restriction
  on property: part of
  some values from: prespore region of the migratory slug
subclass of: Restriction
  on property: develops_from
  some values from: aggregate cell
definition: Cell that has properties of anterior cells (for e.g., accumulate vital dyes in autophagic vesicles) but that is are scattered throughout the rear of the slug. Some but not all these cells express the ecmA gene and/or the ecmB gene. ALCs maintain an amoeboid appearance during culmination. ALCs that express the ecmO promoter have been called pstO/ALC.
has_exact_synonym: ALC
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000404

Axiom
annotated source: anterior like cell
annotated property: definition
annotated target: Cell that has properties of anterior cells (for e.g., accumulate vital dyes in autophagic vesicles) but that is are scattered throughout the rear of the slug. Some but not all these cells express the ecmA gene and/or the ecmB gene. ALCs maintain an amoeboid appearance during culmination. ALCs that express the ecmO promoter have been called pstO/ALC.
database_cross_reference: DDB:pg

prespore cell
type: Class
subclass of: cell
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: part of
  some values from: prespore region of the tipped mound
subclass of: Restriction
  on property: part of
  some values from: prespore region of the standing slug
subclass of: Restriction
  on property: part of
  some values from: prespore region of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: prespore region of the early culminant
subclass of: Restriction
  on property: part of
  some values from: prespore region of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: sorus of the late culminant
subclass of: Restriction
  on property: develops_from
  some values from: aggregate cell
definition: Cell that is undergoing differentiation to become a spore. Characterized by the presence of prespore vesicles (PV).
has_exact_synonym: psp cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000405

Axiom
annotated source: prespore cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a spore. Characterized by the presence of prespore vesicles (PV).
database_cross_reference: DDB:pg
database_cross_reference: PMID:4330277

prestalk cell
type: Class
subclass of: cell
definition: Cell that is undergoing differentiation to become a stalk cell and characterized by the ability to update vital dyes. Represents about one-quarter of the cells. During development, prestalk cells are located in the anterior portion of the organism.
has_exact_synonym: anterior cell
has_exact_synonym: pst cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000406

Axiom
annotated source: prestalk cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell and characterized by the ability to update vital dyes. Represents about one-quarter of the cells. During development, prestalk cells are located in the anterior portion of the organism.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4330277

pstO cell
type: Class
subclass of: prestalk cell
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: part of
  some values from: mound
subclass of: Restriction
  on property: part of
  some values from: prestalk O region of the standing slug
subclass of: Restriction
  on property: part of
  some values from: prestalk O region of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: prestalk O region of the early culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk O region of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk O region of the tipped mound
definition: Cell that is undergoing differentiation to become a stalk cell. pstO cells express ecmA at a very low level and are located at the posterior half of the prestalk zone. Expresses ecmA from the distal region of its promoter (ecmO).
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: prestalk O cell
id: DDANAT:0000407

Axiom
annotated source: pstO cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell. pstO cells express ecmA at a very low level and are located at the posterior half of the prestalk zone. Expresses ecmA from the distal region of its promoter (ecmO).
database_cross_reference: DDB:pg

pstA cell
type: Class
subclass of: prestalk cell
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: part of
  some values from: mound
subclass of: Restriction
  on property: part of
  some values from: prestalk A region of the standing slug
subclass of: Restriction
  on property: part of
  some values from: prestalk A region of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: prestalk A region of the early culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk A region of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk A region of the tipped mound
definition: Cell that is undergoing differentiation to become a stalk cell. pstA cells express the ecmA marker from a promoter region that is proximal to the ATG (ecmAO promoter). They are located at the anterior-most region of the slug. During culmination pstA cells differentiate into pstAB cells.
has_exact_synonym: prestalk A cell
has_exact_synonym: pstAO cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000408

Axiom
annotated source: pstA cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell. pstA cells express the ecmA marker from a promoter region that is proximal to the ATG (ecmAO promoter). They are located at the anterior-most region of the slug. During culmination pstA cells differentiate into pstAB cells.
database_cross_reference: DDB:pg

rearguard cell
type: Class
subclass of: anterior like cell
subclass of: Restriction
  on property: part of
  some values from: basal region of the standing slug
subclass of: Restriction
  on property: part of
  some values from: posterior region of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: basal region of the early culminant
subclass of: Restriction
  on property: part of
  some values from: basal disc of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: outer basal disc of the late culminant
subclass of: Restriction
  on property: part of
  some values from: lower cup of the fruiting body
subclass of: Restriction
  on property: part of
  some values from: outer basal disc of the fruiting body
definition: Cell expressing ecmB but not ecmA. Rearguard cells are located at the very rear of the slug (rearguard region). These cells form the outer basal disc of the fruiting body. If a migratory slug is formed, these cells are left behind.
has_obo_namespace: Dictyostelium_discoideum_anatomy
has_related_synonym: prestalk B cell
has_related_synonym: pstB cell
id: DDANAT:0000409

Axiom
annotated source: rearguard cell
annotated property: definition
annotated target: Cell expressing ecmB but not ecmA. Rearguard cells are located at the very rear of the slug (rearguard region). These cells form the outer basal disc of the fruiting body. If a migratory slug is formed, these cells are left behind.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8631253

pstAB cell
type: Class
subclass of: prestalk cell
subclass of: Restriction
  on property: part of
  some values from: mound
subclass of: Restriction
  on property: part of
  some values from: prestalk AB core region of the standing slug
subclass of: Restriction
  on property: part of
  some values from: prestalk AB core region of the migratory slug
subclass of: Restriction
  on property: part of
  some values from: prestalk AB core region of the early culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk AB core region of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: prestalk AB core region of the tipped mound
subclass of: Restriction
  on property: develops_from
  some values from: pstA cell
definition: Cell that is undergoing differentiation to become a stalk cell. pstAB cells express both ecmA and ecmB either simultaneously or sequentially. During culmination pstA differentiate into pstAB cells.
has_exact_synonym: prestalk AB cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000410

Axiom
annotated source: pstAB cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell. pstAB cells express both ecmA and ecmB either simultaneously or sequentially. During culmination pstA differentiate into pstAB cells.
database_cross_reference: DDB:pg

pstAB/ALC
type: Class
subclass of: anterior like cell
definition: Anterior-like cell expressing both ecmA and ecmB.
has_exact_synonym: prestalk AB/anterior like cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000411

Axiom
annotated source: pstAB/ALC
annotated property: definition
annotated target: Anterior-like cell expressing both ecmA and ecmB.
database_cross_reference: DDB:pg

pstO/ALC
type: Class
subclass of: anterior like cell
definition: Anterior-like cell that expresses the ecmO promoter and that can move to the position normally occupied by the pstO cells.
has_exact_synonym: prestalk O/anterior like cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000412

Axiom
annotated source: pstO/ALC
annotated property: definition
annotated target: Anterior-like cell that expresses the ecmO promoter and that can move to the position normally occupied by the pstO cells.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8205618

stalk cell
type: Class
subclass of: cell
subclass of: Restriction
  on property: part of
  some values from: stalk of the mid culminant
subclass of: Restriction
  on property: part of
  some values from: stalk of the late culminant
subclass of: Restriction
  on property: part of
  some values from: inner basal disc of the late culminant
subclass of: Restriction
  on property: part of
  some values from: stalk of the fruiting body
subclass of: Restriction
  on property: part of
  some values from: inner basal disc of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: pstAB cell
definition: Cell of polyhedric shape filling the stalk tube. Stack cells are large (around 8 microns in diameter), highly vacuolated, and are surrounded by cell wall composed of cellulose. Stalk cells die upon terminal differentiation. Their role is to provide structural support for the fruiting body.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000413

Axiom
annotated source: stalk cell
annotated property: definition
annotated target: Cell of polyhedric shape filling the stalk tube. Stack cells are large (around 8 microns in diameter), highly vacuolated, and are surrounded by cell wall composed of cellulose. Stalk cells die upon terminal differentiation. Their role is to provide structural support for the fruiting body.
database_cross_reference: DDB:pg

spore
type: Class
subclass of: Dictyostelium discoideum single cell organism
subclass of: Restriction
  on property: part of
  some values from: sorus of the fruiting body
subclass of: Restriction
  on property: develops_from
  some values from: prespore cell
definition: Dormant cell protected by a tri-layer spore coat. The spore has an elliptical shape and is approximately 6-9 microns by 3 microns.
has_exact_synonym: spore cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000414

Axiom
annotated source: spore
annotated property: definition
annotated target: Dormant cell protected by a tri-layer spore coat. The spore has an elliptical shape and is approximately 6-9 microns by 3 microns.
database_cross_reference: DDB:pg
database_cross_reference: PMID:4338436

aspidocyte
type: Class
subclass of: Dictyostelium discoideum single cell organism
subclass of: Restriction
  on property: develops_from
  some values from: spore
definition: Cell type formed in the presence of toxins. The membrane of the aspidocyte is highly resistant to detergents.
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000415

Axiom
annotated source: aspidocyte
annotated property: definition
annotated target: Cell type formed in the presence of toxins. The membrane of the aspidocyte is highly resistant to detergents.
database_cross_reference: DDB:pg
database_cross_reference: PMID:17259634

pstB cell
type: Class
subclass of: prestalk cell
subclass of: Restriction
  on property: part of
  some values from: loose aggregate
subclass of: Restriction
  on property: part of
  some values from: mound
definition: Cell that is undergoing differentiation to become a stalk cell. pstB cells express the ecmB marker and form the outer basal disc in the fruiting body.
has_exact_synonym: prestalk B cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000417

Axiom
annotated source: pstB cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell. pstB cells express the ecmB marker and form the outer basal disc in the fruiting body.
database_cross_reference: DDB:pg
database_cross_reference: PMID:8631253
database_cross_reference: PMID:8631254

sentinel cell
type: Class
subclass of: cell
definition: Cell present in multicellular organism that has a high ability to engulf bacteria and toxin and is presumed to have a detoxification and immune-like role.
has_exact_synonym: S cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0000418

Axiom
annotated source: sentinel cell
annotated property: definition
annotated target: Cell present in multicellular organism that has a high ability to engulf bacteria and toxin and is presumed to have a detoxification and immune-like role.
database_cross_reference: DDB:pf
database_cross_reference: PMID:17673666

pstU/ALC
type: Class
subclass of: anterior like cell
definition: Anterior-like cell that expresses the rtaA promoter but not ecmA, ecmB or the ecmO promoter.
created by: pfey
creation date: 2013-01-15T14:53:33Z
has_exact_synonym: prestalk U/anterior like cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0001000

Axiom
annotated source: pstU/ALC
annotated property: definition
annotated target: Anterior-like cell that expresses the rtaA promoter but not ecmA, ecmB or the ecmO promoter.
database_cross_reference: DDB:pf
database_cross_reference: PMID:20080085

pstU cell
type: Class
subclass of: prestalk cell
definition: Cell that is undergoing differentiation to become a stalk cell. pstU cells express the rtaA marker and preferentially populate the upper cup region during culmination.
created by: pfey
creation date: 2013-01-15T15:06:40Z
has_exact_synonym: prestalk U cell
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0001001

Axiom
annotated source: pstU cell
annotated property: definition
annotated target: Cell that is undergoing differentiation to become a stalk cell. pstU cells express the rtaA marker and preferentially populate the upper cup region during culmination.
database_cross_reference: DDB:pf
database_cross_reference: PMID:20080085

Dictyostelium discoideum anatomical structure
type: Class
definition: Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the Dictyostelium discoideum genome.
has_alternative_id: DDANAT:0000001
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0010001

Axiom
annotated source: Dictyostelium discoideum anatomical structure
annotated property: definition
annotated target: Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the Dictyostelium discoideum genome.
database_cross_reference: CARO:MAH

acellular anatomical structure
type: Class
subclass of: Dictyostelium discoideum anatomical structure
definition: Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.
has_alternative_id: DDANAT:0000081
database_cross_reference: CARO:0000040
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0010081

Axiom
annotated source: acellular anatomical structure
annotated property: definition
annotated target: Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue.
database_cross_reference: CARO:MAH

whole organism
type: Class
subclass of: Dictyostelium discoideum anatomical structure
definition: Anatomical structure that is an individual member of the Dictyostelium discoideum species and consists of more than one cell.
has_alternative_id: DDANAT:0000082
database_cross_reference: CARO:0000012
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0010082

Axiom
annotated source: whole organism
annotated property: definition
annotated target: Anatomical structure that is an individual member of the Dictyostelium discoideum species and consists of more than one cell.
database_cross_reference: CARO:MAH

subdivision
type: Class
subclass of: Dictyostelium discoideum anatomical structure
definition: Anatomical structure which is a primary subdivision of whole Dictyostelium organism. The mereological sum of these is the whole organism.
has_alternative_id: DDANAT:0000085
database_cross_reference: CARO:0000032
has_obo_namespace: Dictyostelium_discoideum_anatomy
id: DDANAT:0010085

Axiom
annotated source: subdivision
annotated property: definition
annotated target: Anatomical structure which is a primary subdivision of whole Dictyostelium organism. The mereological sum of these is the whole organism.
database_cross_reference: DDB:pg