# Publication Records

This file is **generated**. Do not edit by hand.

Local source fields come from `infrastructure.project.public_scope`, each public exemplar's `manuscript/config.yaml`, `CITATION.cff`, and `.zenodo.json`. GitHub and Zenodo columns are from public APIs when the generator runs with `--refresh-external` (not refreshed in this run).
Additional publication locations are source-owned declarations from `publication.published_artifacts`; they are indexed here but are not independently live-checked.

Regenerate:

```bash
uv run python scripts/docgen/publication_records.py --refresh-external
```

## Coverage Summary

- Public exemplars indexed: **24**.
- Standalone guides present: **24/24**.
- Standalone GitHub repositories declared: **24/24**.
- Concept and version DOI pairs declared: **23/24**.
- Additional publication locations declared: **105** across **16** exemplars.

## Public Exemplar Publication Matrix

| Project | Config version | Standalone guide | GitHub repo | Latest GitHub release | Concept DOI | Latest version DOI | Other locations | Zenodo version | Status |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
| `templates/template_active_inference` | 0.3.2 | [`STANDALONE.md`](../../projects/templates/template_active_inference/STANDALONE.md) | [docxology/template_active_inference](https://github.com/docxology/template_active_inference) | not checked | [10.5281/zenodo.20417021](https://doi.org/10.5281/zenodo.20417021) | [10.5281/zenodo.20931870](https://doi.org/10.5281/zenodo.20931870) | [github_pages](https://docxology.github.io/template_active_inference/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_active_inference)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmRRKmm7XCHTE78fs21dYwM7tKwv8HK2g4bynhtds75Rb9)<br>[netlify](https://6a4433498786d3e4e58ea021--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/hdxr2/)<br>[pypi](https://test.pypi.org/project/template-active-inference/0.3.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_active_inference) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_advanced_literature_review` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_advanced_literature_review/STANDALONE.md) | [docxology/template_advanced_literature_review](https://github.com/docxology/template_advanced_literature_review) | not checked | n/a | n/a | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_autopoiesis` | 1.0.1 | [`STANDALONE.md`](../../projects/templates/template_autopoiesis/STANDALONE.md) | [docxology/template_autopoiesis](https://github.com/docxology/template_autopoiesis) | not checked | [10.5281/zenodo.21227869](https://doi.org/10.5281/zenodo.21227869) | [10.5281/zenodo.21229620](https://doi.org/10.5281/zenodo.21229620) | [ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmanoQUGKKFeYFtd5HRpB4ysE9jVxbzvaWpqgpWu5rRi8V)<br>[osf](https://osf.io/ksmzp/) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_autoresearch_project` | 0.3.2 | [`STANDALONE.md`](../../projects/templates/template_autoresearch_project/STANDALONE.md) | [docxology/template_autoresearch_project](https://github.com/docxology/template_autoresearch_project) | not checked | [10.5281/zenodo.20417016](https://doi.org/10.5281/zenodo.20417016) | [10.5281/zenodo.20931907](https://doi.org/10.5281/zenodo.20931907) | [github_pages](https://docxology.github.io/template_autoresearch_project/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_autoresearch_project)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmZvS2v7ZpqS4T8ZufeW9sA4gNBteAdVfmLH4LcoAqrUhv)<br>[netlify](https://6a443f868786d30c7d8ea014--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/geykb/)<br>[pypi](https://test.pypi.org/project/template-autoresearch-project/0.3.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_autoresearch_project) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_autoscientists` | 1.0.2 | [`STANDALONE.md`](../../projects/templates/template_autoscientists/STANDALONE.md) | [docxology/template_autoscientists](https://github.com/docxology/template_autoscientists) | not checked | [10.5281/zenodo.20533669](https://doi.org/10.5281/zenodo.20533669) | [10.5281/zenodo.20931927](https://doi.org/10.5281/zenodo.20931927) | [github_pages](https://docxology.github.io/template_autoscientists/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_autoscientists)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmX6F3ExeC87DxxH95YgJuHcJmjhXuf1x54BKF6V5bn5z4)<br>[netlify](https://6a44401a17ba160047501e98--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/6xcf5/)<br>[pypi](https://test.pypi.org/project/template-autoscientists/1.0.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_autoscientists) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_code_project` | 2.5.2 | [`STANDALONE.md`](../../projects/templates/template_code_project/STANDALONE.md) | [docxology/template_code_project](https://github.com/docxology/template_code_project) | not checked | [10.5281/zenodo.20417136](https://doi.org/10.5281/zenodo.20417136) | [10.5281/zenodo.20931934](https://doi.org/10.5281/zenodo.20931934) | [github_pages](https://docxology.github.io/template_code_project/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_code_project)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmSVZF1MisqWeX1C7vFUhcwCkYvZXBuq5TS9MzLFNJJykS)<br>[netlify](https://6a4440a789b44ad53f3af09b--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/mcv8j/)<br>[pypi](https://test.pypi.org/project/template-code-project/2.5.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_code_project) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_data_descriptor` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_data_descriptor/STANDALONE.md) | [docxology/template_data_descriptor](https://github.com/docxology/template_data_descriptor) | not checked | [10.5281/zenodo.21298883](https://doi.org/10.5281/zenodo.21298883) | [10.5281/zenodo.21298884](https://doi.org/10.5281/zenodo.21298884) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_eda_notebook` | 1.0.0 | [`STANDALONE.md`](../../projects/templates/template_eda_notebook/STANDALONE.md) | [docxology/template_eda_notebook](https://github.com/docxology/template_eda_notebook) | not checked | [10.5281/zenodo.21086292](https://doi.org/10.5281/zenodo.21086292) | [10.5281/zenodo.21086293](https://doi.org/10.5281/zenodo.21086293) | [github_pages](https://docxology.github.io/template_eda_notebook/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_eda_notebook)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmSsHhWo2JC76gQSy6rQuN6uKTP1gH9vtj3kGKLgY5oU4E)<br>[netlify](https://6a444920f59418acc0357e9f--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/ycwsk/)<br>[pypi](https://test.pypi.org/project/template-eda-notebook/1.0.0/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_eda_notebook) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_formal` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_formal/STANDALONE.md) | [docxology/template_formal](https://github.com/docxology/template_formal) | not checked | [10.5281/zenodo.21298885](https://doi.org/10.5281/zenodo.21298885) | [10.5281/zenodo.21298886](https://doi.org/10.5281/zenodo.21298886) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_gold_refinement` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_gold_refinement/STANDALONE.md) | [docxology/template_gold_refinement](https://github.com/docxology/template_gold_refinement) | not checked | [10.5281/zenodo.20931955](https://doi.org/10.5281/zenodo.20931955) | [10.5281/zenodo.20938523](https://doi.org/10.5281/zenodo.20938523) | [huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_gold_refinement)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmQBXK5qoGv5NSWC8mzcx22AgkHeqBJL8z8HrCgEy7nzio)<br>[osf](https://osf.io/u485p/)<br>[pypi](https://test.pypi.org/project/template-gold-refinement/0.1.0/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_gold_refinement) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_literature_meta_analysis` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_literature_meta_analysis/STANDALONE.md) | [docxology/template_literature_meta_analysis](https://github.com/docxology/template_literature_meta_analysis) | not checked | [10.5281/zenodo.20931964](https://doi.org/10.5281/zenodo.20931964) | [10.5281/zenodo.20931965](https://doi.org/10.5281/zenodo.20931965) | [github_pages](https://docxology.github.io/template_literature_meta_analysis/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_literature_meta_analysis)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmbeNkcrBdccxaPihkcjRxLNagNeYLFaGA7xgi5aXEigM1)<br>[netlify](https://6a444119738f1fa89d68e5a2--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/3z5yp/)<br>[pypi](https://test.pypi.org/project/template-literature-meta-analysis/0.1.0/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_literature_meta_analysis) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_madlib` | 0.1.1 | [`STANDALONE.md`](../../projects/templates/template_madlib/STANDALONE.md) | [docxology/template_madlib](https://github.com/docxology/template_madlib) | not checked | [10.5281/zenodo.20786638](https://doi.org/10.5281/zenodo.20786638) | [10.5281/zenodo.20932025](https://doi.org/10.5281/zenodo.20932025) | [github_pages](https://docxology.github.io/template_madlib/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_madlib)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmcrHEuVYorBXHuLXZRjHQQ7kgKnAJx1MvxNpbyZSrvxNQ)<br>[netlify](https://6a44418df7f6f9fa20037643--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/ndpue/)<br>[pypi](https://test.pypi.org/project/template-madlib/0.1.1/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_madlib) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_methods_paper` | 1.0.0 | [`STANDALONE.md`](../../projects/templates/template_methods_paper/STANDALONE.md) | [docxology/template_methods_paper](https://github.com/docxology/template_methods_paper) | not checked | [10.5281/zenodo.21086548](https://doi.org/10.5281/zenodo.21086548) | [10.5281/zenodo.21086549](https://doi.org/10.5281/zenodo.21086549) | [github_pages](https://docxology.github.io/template_methods_paper/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_methods_paper)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/Qmc9puHs6KiEnCraVgWUXVxcyAZyT7nt9EMXXLBhy2bAou)<br>[netlify](https://6a444b88aa6e4e3c5d216e16--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/6d7nh/)<br>[pypi](https://test.pypi.org/project/template-methods-paper/1.0.0/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_methods_paper) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_newspaper` | 1.0.2 | [`STANDALONE.md`](../../projects/templates/template_newspaper/STANDALONE.md) | [docxology/template_newspaper](https://github.com/docxology/template_newspaper) | not checked | [10.5281/zenodo.20533675](https://doi.org/10.5281/zenodo.20533675) | [10.5281/zenodo.20932039](https://doi.org/10.5281/zenodo.20932039) | [github_pages](https://docxology.github.io/template_newspaper/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_newspaper)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmUsept2d9X3sz42whTgEGM9TjdxjzSqxnuyPCbu3pPwku)<br>[netlify](https://6a4441f8d6dc10153d77788d--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/tzwf8/)<br>[pypi](https://test.pypi.org/project/template-newspaper/1.0.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_newspaper) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_pitch_deck` | 1.0.0 | [`STANDALONE.md`](../../projects/templates/template_pitch_deck/STANDALONE.md) | [docxology/template-pitch-deck](https://github.com/docxology/template-pitch-deck) | not checked | [10.5281/zenodo.21281509](https://doi.org/10.5281/zenodo.21281509) | [10.5281/zenodo.21281510](https://doi.org/10.5281/zenodo.21281510) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_pools_rules_tools` | 1.0.0 | [`STANDALONE.md`](../../projects/templates/template_pools_rules_tools/STANDALONE.md) | [docxology/template_pools_rules_tools](https://github.com/docxology/template_pools_rules_tools) | not checked | [10.5281/zenodo.21298888](https://doi.org/10.5281/zenodo.21298888) | [10.5281/zenodo.21298889](https://doi.org/10.5281/zenodo.21298889) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_prose_project` | 0.4.2 | [`STANDALONE.md`](../../projects/templates/template_prose_project/STANDALONE.md) | [docxology/template_prose_project](https://github.com/docxology/template_prose_project) | not checked | [10.5281/zenodo.20417104](https://doi.org/10.5281/zenodo.20417104) | [10.5281/zenodo.20932047](https://doi.org/10.5281/zenodo.20932047) | [github_pages](https://docxology.github.io/template_prose_project/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_prose_project)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmXXUgas1amP7Pd9rRoTdJQiNUzBqKQ4r3Jf85aaGEnjz4)<br>[netlify](https://6a44425bbd23b314b04b0154--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/sh2r3/)<br>[pypi](https://test.pypi.org/project/template-prose-project/0.4.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_prose_project) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_redacted_report` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_redacted_report/STANDALONE.md) | [docxology/template_redacted_report](https://github.com/docxology/template_redacted_report) | not checked | [10.5281/zenodo.21298890](https://doi.org/10.5281/zenodo.21298890) | [10.5281/zenodo.21298891](https://doi.org/10.5281/zenodo.21298891) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_registered_report` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_registered_report/STANDALONE.md) | [docxology/template_registered_report](https://github.com/docxology/template_registered_report) | not checked | [10.5281/zenodo.21298892](https://doi.org/10.5281/zenodo.21298892) | [10.5281/zenodo.21298893](https://doi.org/10.5281/zenodo.21298893) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_search_project` | 0.1 | [`STANDALONE.md`](../../projects/templates/template_search_project/STANDALONE.md) | [docxology/template_search_project](https://github.com/docxology/template_search_project) | not checked | [10.5281/zenodo.21298894](https://doi.org/10.5281/zenodo.21298894) | [10.5281/zenodo.21298895](https://doi.org/10.5281/zenodo.21298895) | n/a | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_sia` | 0.1.2 | [`STANDALONE.md`](../../projects/templates/template_sia/STANDALONE.md) | [docxology/template_sia](https://github.com/docxology/template_sia) | not checked | [10.5281/zenodo.20453879](https://doi.org/10.5281/zenodo.20453879) | [10.5281/zenodo.20932066](https://doi.org/10.5281/zenodo.20932066) | [github_pages](https://docxology.github.io/template_sia/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_sia)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmccbCX9YXJMd3fNfkZ3H59dnWRnB6xgeVCM8kmPGQtaBh)<br>[netlify](https://6a4442bb57aaff1e1b2992d1--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/85bxe/)<br>[pypi](https://test.pypi.org/project/template-sia/0.1.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_sia) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_storybook` | 0.1.0 | [`STANDALONE.md`](../../projects/templates/template_storybook/STANDALONE.md) | [docxology/template_storybook](https://github.com/docxology/template_storybook) | not checked | [10.5281/zenodo.21176000](https://doi.org/10.5281/zenodo.21176000) | [10.5281/zenodo.21176001](https://doi.org/10.5281/zenodo.21176001) | [github](https://github.com/docxology/template_storybook/releases/tag/v0.1.0)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_storybook)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmPcB1mTMZQb541ZsmwDwc6rQgSTLR4BGYefdTLsj1s5Qy)<br>[netlify](https://6a47fd2233010f4eb138cdcd--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/xbajh/)<br>[pypi](https://test.pypi.org/project/template-storybook/0.1.0/)<br>[software_heritage](https://archive.softwareheritage.org/api/1/origin/save/git/url/https://github.com/docxology/template_storybook/) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_template` | 1.0.9 | [`STANDALONE.md`](../../projects/templates/template_template/STANDALONE.md) | [docxology/template_template](https://github.com/docxology/template_template) | not checked | [10.5281/zenodo.20419007](https://doi.org/10.5281/zenodo.20419007) | [10.5281/zenodo.20976048](https://doi.org/10.5281/zenodo.20976048) | [github_pages](https://docxology.github.io/template_template/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_template)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmVr4UREM1NeaSfY1pNJdjFjrRrGMZLvnNqCY2cRaGadry)<br>[netlify](https://6a44431e738f1faeef68e5f6--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/byf23/)<br>[pypi](https://test.pypi.org/project/template-template-meta-project/1.0.9/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_template) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |
| `templates/template_textbook` | 0.1.2 | [`STANDALONE.md`](../../projects/templates/template_textbook/STANDALONE.md) | [docxology/template_textbook](https://github.com/docxology/template_textbook) | not checked | [10.5281/zenodo.20533125](https://doi.org/10.5281/zenodo.20533125) | [10.5281/zenodo.20932112](https://doi.org/10.5281/zenodo.20932112) | [github_pages](https://docxology.github.io/template_textbook/)<br>[huggingface_hub](https://huggingface.co/datasets/ActiveInference/template_textbook)<br>[ipfs_pinata](https://gateway.pinata.cloud/ipfs/QmaTFtcxkdPJGC3HHWVCkQQC81SYTD8Ninu2BB9KxiHxEN)<br>[netlify](https://6a4443ae4a7a3eb5dba63532--tranquil-kleicha-0c9203.netlify.app)<br>[osf](https://osf.io/8kg5z/)<br>[pypi](https://test.pypi.org/project/template-textbook/0.1.2/)<br>[software_heritage](https://archive.softwareheritage.org/browse/origin/?origin_url=https://github.com/docxology/template_textbook) | not checked | ok; unverified; GitHub repo not checked; GitHub release not checked; Zenodo not checked |

## Local Source Paths

| Project | Standalone guide | Config | Citation | Zenodo metadata | CodeMeta |
| --- | --- | --- | --- | --- | --- |
| `templates/template_active_inference` | [`STANDALONE.md`](../../projects/templates/template_active_inference/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_active_inference/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_active_inference/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_active_inference/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_active_inference/codemeta.json) |
| `templates/template_advanced_literature_review` | [`STANDALONE.md`](../../projects/templates/template_advanced_literature_review/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_advanced_literature_review/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_advanced_literature_review/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_advanced_literature_review/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_advanced_literature_review/codemeta.json) |
| `templates/template_autopoiesis` | [`STANDALONE.md`](../../projects/templates/template_autopoiesis/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_autopoiesis/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_autopoiesis/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_autopoiesis/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_autopoiesis/codemeta.json) |
| `templates/template_autoresearch_project` | [`STANDALONE.md`](../../projects/templates/template_autoresearch_project/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_autoresearch_project/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_autoresearch_project/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_autoresearch_project/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_autoresearch_project/codemeta.json) |
| `templates/template_autoscientists` | [`STANDALONE.md`](../../projects/templates/template_autoscientists/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_autoscientists/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_autoscientists/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_autoscientists/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_autoscientists/codemeta.json) |
| `templates/template_code_project` | [`STANDALONE.md`](../../projects/templates/template_code_project/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_code_project/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_code_project/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_code_project/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_code_project/codemeta.json) |
| `templates/template_data_descriptor` | [`STANDALONE.md`](../../projects/templates/template_data_descriptor/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_data_descriptor/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_data_descriptor/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_data_descriptor/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_data_descriptor/codemeta.json) |
| `templates/template_eda_notebook` | [`STANDALONE.md`](../../projects/templates/template_eda_notebook/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_eda_notebook/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_eda_notebook/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_eda_notebook/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_eda_notebook/codemeta.json) |
| `templates/template_formal` | [`STANDALONE.md`](../../projects/templates/template_formal/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_formal/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_formal/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_formal/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_formal/codemeta.json) |
| `templates/template_gold_refinement` | [`STANDALONE.md`](../../projects/templates/template_gold_refinement/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_gold_refinement/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_gold_refinement/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_gold_refinement/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_gold_refinement/codemeta.json) |
| `templates/template_literature_meta_analysis` | [`STANDALONE.md`](../../projects/templates/template_literature_meta_analysis/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_literature_meta_analysis/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_literature_meta_analysis/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_literature_meta_analysis/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_literature_meta_analysis/codemeta.json) |
| `templates/template_madlib` | [`STANDALONE.md`](../../projects/templates/template_madlib/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_madlib/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_madlib/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_madlib/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_madlib/codemeta.json) |
| `templates/template_methods_paper` | [`STANDALONE.md`](../../projects/templates/template_methods_paper/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_methods_paper/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_methods_paper/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_methods_paper/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_methods_paper/codemeta.json) |
| `templates/template_newspaper` | [`STANDALONE.md`](../../projects/templates/template_newspaper/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_newspaper/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_newspaper/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_newspaper/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_newspaper/codemeta.json) |
| `templates/template_pitch_deck` | [`STANDALONE.md`](../../projects/templates/template_pitch_deck/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_pitch_deck/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_pitch_deck/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_pitch_deck/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_pitch_deck/codemeta.json) |
| `templates/template_pools_rules_tools` | [`STANDALONE.md`](../../projects/templates/template_pools_rules_tools/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_pools_rules_tools/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_pools_rules_tools/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_pools_rules_tools/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_pools_rules_tools/codemeta.json) |
| `templates/template_prose_project` | [`STANDALONE.md`](../../projects/templates/template_prose_project/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_prose_project/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_prose_project/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_prose_project/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_prose_project/codemeta.json) |
| `templates/template_redacted_report` | [`STANDALONE.md`](../../projects/templates/template_redacted_report/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_redacted_report/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_redacted_report/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_redacted_report/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_redacted_report/codemeta.json) |
| `templates/template_registered_report` | [`STANDALONE.md`](../../projects/templates/template_registered_report/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_registered_report/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_registered_report/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_registered_report/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_registered_report/codemeta.json) |
| `templates/template_search_project` | [`STANDALONE.md`](../../projects/templates/template_search_project/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_search_project/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_search_project/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_search_project/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_search_project/codemeta.json) |
| `templates/template_sia` | [`STANDALONE.md`](../../projects/templates/template_sia/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_sia/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_sia/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_sia/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_sia/codemeta.json) |
| `templates/template_storybook` | [`STANDALONE.md`](../../projects/templates/template_storybook/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_storybook/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_storybook/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_storybook/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_storybook/codemeta.json) |
| `templates/template_template` | [`STANDALONE.md`](../../projects/templates/template_template/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_template/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_template/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_template/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_template/codemeta.json) |
| `templates/template_textbook` | [`STANDALONE.md`](../../projects/templates/template_textbook/STANDALONE.md) | [`manuscript/config.yaml`](../../projects/templates/template_textbook/manuscript/config.yaml) | [`CITATION.cff`](../../projects/templates/template_textbook/CITATION.cff) | [`.zenodo.json`](../../projects/templates/template_textbook/.zenodo.json) | [`codemeta.json`](../../projects/templates/template_textbook/codemeta.json) |

## DOI Roles

- `publication.doi` is the stable Zenodo concept DOI used for citations and PDF cover pages.
- `publication.version_doi` is the latest immutable Zenodo deposit DOI.
- `publication.version_record` points at the latest immutable Zenodo record page.
- `publication.github_repository` is the standalone public GitHub repository for the exemplar.
- `STANDALONE.md` documents what works outside the monorepo and what still requires shared infrastructure.
- `publication.published_artifacts` records additional durable locations such as OSF, Software Heritage, Hugging Face, IPFS, package indexes, and static sites; an absent entry is not treated as published.