MATCHER
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpuMWEwJ/input:
expression.csv
params.json
Running L-BFGS-B (Scipy implementation) Code:
runtime i f |g|
00s00 0000 3.680580e+04 nan
00s06 0001 3.680580e+04 1.331441e+08
00s09 0002 2.899904e+04 2.672450e+07
00s13 0003 2.562772e+04 7.790202e+06
00s18 0004 2.351899e+04 1.925478e+06
01s19 0019 2.093426e+04 1.112393e+01
02s20 0039 2.093183e+04 4.293114e-01
03s24 0059 2.093173e+04 1.307644e-01
04s25 0081 2.093174e+04 1.770411e-01
04s94 0096 2.093173e+04 1.424427e-01
Runtime: 04s94
Optimization status: Converged
output saved in /scratch/irc/personal/robrechtc/tmp//RtmpuMWEwJ/output:
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpRRAjCZ/input:
expression.csv
params.json
Running L-BFGS-B (Scipy implementation) Code:
runtime i f |g|
00s00 0000 4.620239e+04 nan
00s04 0001 4.620239e+04 2.930021e+08
00s07 0002 3.483771e+04 5.420700e+07
00s13 0003 3.031758e+04 1.744812e+07
00s16 0004 2.699375e+04 4.351639e+06
00s19 0005 2.525508e+04 1.170731e+06
01s22 0039 2.299451e+04 3.858489e+00
02s17 0073 2.299357e+04 1.888477e-02
Runtime: 02s17
Optimization status: Converged
output saved in /scratch/irc/personal/robrechtc/tmp//RtmpRRAjCZ/output:
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpmdtNuD/input:
expression.csv
params.json
Running L-BFGS-B (Scipy implementation) Code:
runtime i f |g|
00s00 0000 4.344737e+06 nan
00s06 0001 4.344737e+06 3.065392e+12
00s13 0002 3.236715e+06 4.277290e+11
01s17 0017 2.513534e+06 5.894031e+04
02s21 0029 2.511877e+06 2.506239e+04
03s21 0041 2.511919e+06 2.229386e+06
04s25 0054 2.511594e+06 1.680164e+04
05s27 0066 2.511537e+06 7.612722e+03
06s32 0079 2.511437e+06 9.293955e+03
07s39 0095 2.511296e+06 2.512593e+03
08s41 0109 2.511281e+06 3.617117e+03
09s45 0125 2.511269e+06 3.591184e+03
10s47 0138 2.511265e+06 5.980356e+02
11s49 0154 2.511258e+06 2.077886e+02
12s54 0170 2.511255e+06 2.644349e+02
13s58 0186 2.511253e+06 1.443146e+03
14s63 0203 2.511248e+06 3.213017e+02
15s68 0220 2.511247e+06 1.195648e+02
16s75 0234 2.511246e+06 3.135622e+01
17s79 0248 2.511246e+06 1.374378e+03
18s56 0260 2.511246e+06 2.650878e+01
Runtime: 18s56
Optimization status: Converged
output saved in /scratch/irc/personal/robrechtc/tmp//RtmpmdtNuD/output:
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpYbHNK3/input:
expression.csv
params.json
Running L-BFGS-B (Scipy implementation) Code:
runtime i f |g|
00s00 0000 3.631177e+06 nan
01s06 0004 2.655728e+06 1.048944e+10
02s36 0009 2.584812e+06 4.668418e+07
03s46 0013 2.572536e+06 5.451769e+06
04s48 0016 2.567960e+06 1.577330e+07
05s74 0020 2.564918e+06 5.874710e+06
07s06 0024 2.558365e+06 1.003327e+08
08s21 0028 2.554882e+06 1.464076e+06
09s43 0032 2.553214e+06 1.006885e+07
10s46 0037 2.552787e+06 6.980167e+07
11s61 0042 2.551452e+06 8.669707e+05
12s78 0047 2.549614e+06 5.599145e+05
13s83 0051 2.549487e+06 1.324314e+05
15s08 0057 2.549187e+06 1.623341e+05
16s11 0062 2.549086e+06 6.217063e+04
17s32 0067 2.549002e+06 4.534831e+04
18s51 0072 2.548911e+06 3.155513e+04
19s52 0077 2.548869e+06 5.298667e+04
20s66 0085 2.548742e+06 7.460302e+04
21s85 0091 2.548525e+06 2.408396e+05
22s89 0095 2.548311e+06 2.015892e+05
23s94 0099 2.548155e+06 4.955249e+05
25s03 0104 2.547851e+06 1.636094e+05
26s04 0109 2.547613e+06 1.667585e+05
27s10 0114 2.547447e+06 8.646040e+04
28s16 0122 2.547297e+06 2.260398e+05
29s25 0131 2.547182e+06 3.650887e+04
30s41 0136 2.547111e+06 5.515288e+05
31s62 0141 2.547048e+06 2.520352e+06
32s73 0145 2.546948e+06 2.637120e+05
33s75 0151 2.546980e+06 1.963897e+06
34s79 0157 2.546903e+06 1.932414e+04
35s80 0163 2.546877e+06 5.631276e+04
36s94 0168 2.546870e+06 5.825182e+03
38s00 0172 2.546867e+06 3.627427e+05
39s08 0176 2.546825e+06 1.336577e+05
40s24 0181 2.546805e+06 6.534943e+04
41s41 0185 2.546802e+06 2.436120e+03
42s41 0188 2.546801e+06 8.591348e+02
43s59 0192 2.546800e+06 3.835906e+03
44s62 0196 2.546798e+06 4.492300e+03
45s68 0200 2.546796e+06 2.920553e+04
46s91 0204 2.546794e+06 4.430495e+03
48s00 0209 2.546786e+06 4.214384e+04
49s11 0213 2.546783e+06 2.218393e+04
50s16 0217 2.546778e+06 1.572625e+06
51s17 0221 2.546773e+06 8.032853e+04
52s48 0226 2.546765e+06 1.440593e+04
53s50 0230 2.546752e+06 3.679474e+04
54s59 0235 2.546738e+06 7.130733e+03
55s89 0240 2.546734e+06 7.433475e+03
56s95 0244 2.546733e+06 4.329787e+03
58s07 0248 2.546732e+06 8.646223e+02
59s08 0252 2.546732e+06 1.711656e+04
01m00s20 0256 2.546731e+06 1.725560e+03
01m01s42 0262 2.546729e+06 1.925855e+03
01m02s55 0266 2.546729e+06 5.540889e+03
01m03s68 0271 2.546727e+06 7.771631e+02
01m04s89 0276 2.546725e+06 1.533795e+03
01m05s99 0281 2.546725e+06 2.171292e+02
01m07s09 0285 2.546724e+06 9.267421e+02
01m08s23 0291 2.546724e+06 2.348775e+03
01m09s25 0295 2.546724e+06 1.357438e+03
01m10s42 0300 2.546723e+06 5.987087e+02
01m11s52 0304 2.546723e+06 3.236272e+02
01m12s61 0308 2.546723e+06 8.995322e+02
01m13s82 0313 2.546722e+06 1.145118e+03
01m14s90 0317 2.546721e+06 3.141315e+03
01m15s98 0321 2.546720e+06 1.123722e+03
01m17s08 0325 2.546719e+06 1.501413e+03
01m18s44 0329 2.546718e+06 2.186107e+03
01m19s77 0332 2.546718e+06 5.896334e+02
01m20s91 0335 2.546718e+06 2.695400e+02
01m22s19 0339 2.546717e+06 9.853268e+02
01m23s24 0343 2.546717e+06 2.033316e+03
01m24s37 0348 2.546717e+06 7.718104e+02
01m25s67 0353 2.546716e+06 1.327813e+02
01m26s83 0357 2.546716e+06 1.717248e+02
01m28s04 0361 2.546716e+06 5.723971e+01
01m29s28 0365 2.546716e+06 6.532919e+02
01m30s32 0369 2.546716e+06 1.478840e+03
01m31s36 0373 2.546715e+06 2.702065e+03
01m32s49 0378 2.546714e+06 8.484691e+02
01m33s52 0383 2.546714e+06 1.644276e+02
01m34s70 0388 2.546714e+06 3.240381e+02
01m35s75 0393 2.546714e+06 5.592489e+02
01m36s82 0398 2.546713e+06 1.246829e+03
01m38s01 0403 2.546713e+06 7.432699e+02
01m39s17 0408 2.546713e+06 3.348771e+02
01m40s24 0413 2.546712e+06 1.559856e+03
01m41s31 0417 2.546712e+06 1.017928e+03
01m42s33 0421 2.546712e+06 8.704544e+01
01m43s52 0425 2.546712e+06 7.957594e+01
01m44s04 0427 2.546712e+06 1.658647e+02
Runtime: 01m44s04
Optimization status: Converged
output saved in /scratch/irc/personal/robrechtc/tmp//RtmpYbHNK3/output:
pseudotime.csv
timings.json
Input saved to /scratch/irc/personal/robrechtc/tmp//RtmpI0tyBf/input:
expression.csv
params.json
Running L-BFGS-B (Scipy implementation) Code:
runtime i f |g|
00s00 0000 4.166960e+04 nan
00s02 0001 4.166960e+04 2.192866e+08
00s04 0002 3.201409e+04 3.843586e+07
00s07 0003 2.837813e+04 1.234667e+07
00s10 0004 2.570894e+04 3.070833e+06
00s12 0005 2.431829e+04 8.014996e+05
00s14 0006 2.355924e+04 1.887939e+05
00s17 0007 2.318090e+04 4.228504e+04
00s19 0008 2.298356e+04 9.986212e+03
01s21 0050 2.259286e+04 7.552649e-01
01s54 0063 2.259282e+04 2.743386e-01
Runtime: 01s54
Optimization status: Converged
output saved in /scratch/irc/personal/robrechtc/tmp//RtmpI0tyBf/output:
pseudotime.csv
timings.json
Part of 