[project]
name = "curate-ipsum"
version = "2.5.1"
description = "Mutation testing orchestration MCP server with belief revision"
readme = "README.md"
license = {text = "MIT"}
requires-python = ">=3.11"
authors = [
    {name = "Erik Goughnour", email = "e.goughnour@gmail.com"}
]
keywords = ["mutation-testing", "mcp", "belief-revision", "synthesis"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Software Development :: Testing",
]

dependencies = [
    "py-brs>=2.0.0",
    "pydantic>=2.0",
    "mcp>=1.0.0",
]

[project.optional-dependencies]
verify = [
    "z3-solver>=4.12",
]
rag = [
    "chromadb>=0.4",
    "sentence-transformers>=2.2",
]
graph = [
    "scipy>=1.10",
    "networkx>=3.0",
]
synthesis = [
    "httpx>=0.24",
]
graphdb = [
    "kuzu>=0.11.0",
]
embeddings-gpu = [
    "sentence-transformers>=2.2",
    "torch>=2.0",              # GPU-enabled PyTorch (user installs CUDA variant)
]
embeddings-large = [
    "sentence-transformers>=2.2",
    "InstructorEmbedding>=1.0",
]
docs = [
    "sphinx>=7.0",
    "furo>=2024.1",
    "myst-parser>=3.0",
    "sphinx-copybutton>=0.5",
]
dev = [
    "pytest>=7.0",
    "pytest-asyncio>=0.21",
    "ruff>=0.1.0",
    "mypy>=1.0",
    "pre-commit>=3.0",
    "scipy>=1.10",
    "networkx>=3.0",
    "httpx>=0.24",
    "kuzu>=0.11.0",
]

[project.urls]
Homepage = "https://github.com/egoughnour/curate-ipsum"
Documentation = "https://curate-ipsum.readthedocs.io"
Repository = "https://github.com/egoughnour/curate-ipsum"
Changelog = "https://github.com/egoughnour/curate-ipsum/releases"

[project.scripts]
curate-ipsum = "curate_ipsum.server:main"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["curate_ipsum"]

[tool.ruff]
line-length = 120
target-version = "py311"
exclude = [
    "quick-verification/",      # prototype / scratch directory
]

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
docstring-code-format = true

[tool.ruff.lint]
select = ["E", "F", "I", "N", "W", "UP", "B", "C4", "SIM"]
ignore = [
    "E501",   # line length handled by formatter
    "UP007",  # use X | Y for unions — pydantic model compatibility
    "UP037",  # quoted annotations — needed for TYPE_CHECKING forward refs
    "SIM102", # collapsible-if — nested ifs often clearer for readability
    "SIM103", # return negated condition — explicit logic often clearer
    "SIM108", # ternary — readability preference
    "SIM105", # contextlib.suppress — readability preference, try/except clearer
    "SIM110", # use any() instead of for loop — explicit loop often clearer
    "B008",   # function call in default arg — used in dataclass fields
    "N815",   # mixed-case variable in class scope — API/Pydantic model field names
]

[tool.ruff.lint.per-file-ignores]
# MCP tool params are camelCase (protocol contract); lazy imports in annotations
"curate_ipsum/server.py" = ["N803", "N815", "E402", "F821"]
"curate_ipsum/tools.py" = ["N803", "N815"]
# Mathematical code uses uppercase matrix/graph variables
"curate_ipsum/graph/spectral.py" = ["N803", "N806"]
"curate_ipsum/graph/planarity.py" = ["N803", "N806"]
"curate_ipsum/graph/kameda.py" = ["N803", "N806"]
"curate_ipsum/graph/hierarchy.py" = ["N803", "N806"]
"curate_ipsum/graph/partitioner.py" = ["N803", "N806"]
# Angr runner is standalone script, has its own style
"curate_ipsum/verification/runners/run_angr.py" = ["N803", "N806", "E741", "E402"]
# Abstract base classes with optional override methods
"curate_ipsum/rag/vector_store.py" = ["B027"]
"curate_ipsum/synthesis/llm_client.py" = ["B027"]
"curate_ipsum/verification/backend.py" = ["B027"]
# Mathematical code uses uppercase matrix/node variables
"curate_ipsum/synthesis/ast_operators.py" = ["N806"]
"tests/test_spectral.py" = ["N806"]
# Test files use pytest.importorskip which requires imports after setup
"tests/test_full_pipeline_end_to_end.py" = ["E402"]
"tests/test_kuzu_graph_store.py" = ["E402"]
"tests/test_m3_end_to_end.py" = ["E402"]
"tests/test_m5_end_to_end.py" = ["E402"]
"tests/test_m6_rag_end_to_end.py" = ["E402"]
"tests/test_mcp_graph.py" = ["E402"]
"tests/test_rollback.py" = ["E402"]

[tool.ruff.lint.isort]
known-first-party = ["curate_ipsum"]

[tool.mypy]
python_version = "3.11"
strict = true
warn_return_any = true
warn_unused_ignores = true

[tool.pytest.ini_options]
asyncio_mode = "auto"
testpaths = ["tests"]
markers = [
    "integration: requires external services (Docker daemon + embedding model)",
    "docker: requires Docker daemon running",
    "embedding: requires sentence-transformers model available (all-MiniLM-L6-v2)",
]