AnalysisResultsMetadataTemplate
type: Class
comment: Template for analysis and results
subclass of: Component
is part of: schema.biothings.io
display name: analysis_results_metadata_template
required: sms:false
requires dependency: Entity
requires dependency: EntityID
requires dependency: AnalysisType
requires dependency: ResultType
requires dependency: DataTypeAll
requires dependency: Format
requires dependency: DataFormat
requires dependency: WorkflowFormat
requires dependency: Assay
requires dependency: ExperimentalDesign
requires dependency: HasAlgorithm
requires dependency: Algorithm
requires dependency: HasNotebook
requires dependency: Notebook
requires dependency: HasProtocol
requires dependency: Protocol
requires dependency: HasScript
requires dependency: Script
requires dependency: HasSoftware
requires dependency: Software
requires dependency: HasLibrary
requires dependency: Library
requires dependency: HasParameters
requires dependency: Parameters
requires dependency: HasSettings
requires dependency: Settings
requires dependency: HasEnvironment
requires dependency: Environment
requires dependency: HasOpertaingSystem
requires dependency: OperatingSystem
requires dependency: HasProgrammingLanguage
requires dependency: ProgrammingLanguage

Entity
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: entity
required: sms:false

EntityID
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: entityID
required: sms:false

AnalysisType
type: Class
comment: Type of analysis
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ANOVA
range includes: Batcheffectcorrection
range includes: Clustering
range includes: Datanormalization
range includes: De-novoassembly
range includes: Doseresponsestudy
range includes: Enrichmentanalysis
range includes: Genome-wideassociation
range includes: Mendelianrandomizationanalysis
range includes: Networkanalysis
range includes: Polygenicriskscores
range includes: Notassigned
display name: analysisType
required: sms:false

ResultType
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: resultType
required: sms:false

DataTypeAll
type: Class
comment: TBD
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Clinical
range includes: DrugScreen
range includes: Electrophysiology
range includes: Epigenetics
range includes: GeneExpression
range includes: GenomeAssembly
range includes: GenomicVariants
range includes: Imaging
range includes: Lipidomics
range includes: Metabolomics
range includes: Metagenomics
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: Phenotype
range includes: Proteomics
range includes: unknown
range includes: WearableData
display name: dataTypeAll
required: sms:true

Format
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: format
required: sms:false

DataFormat
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: dataFormat
required: sms:false

WorkflowFormat
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: workflowFormat
required: sms:false

Assay
type: Class
comment: The analysis or technology used to generate the data in this file
subclass of: manifestColumn
subclass of: MetadataType
is part of: schema.biothings.io
range includes: 10xmultiome
range includes: 16SrRNAseq
range includes: Activeavoidancelearningbehavior
range includes: Anxiety-relatedbehavior
range includes: ATACSeq
range includes: AtomicForceMicroscopy
range includes: Autoradiography
range includes: BakerLipidomics
range includes: BiocratesBileAcids
range includes: Biocratesp180
range includes: BiocratesQ500
range includes: BisulfiteSeq
range includes: BloodChemistryMeasurement
range includes: BrightfieldMicroscopy
range includes: CellViabilityAssay
range includes: ChIPSeq
range includes: CITESeq
range includes: Contextualconditioningbehavior
range includes: CUT&Tag
range includes: DIA
range includes: DNAopticalmapping
range includes: Electrochemiluminescence
range includes: Elevatedplusmazetest
range includes: ElevatedTmazeapparatusmethod
range includes: ELISA
range includes: ErrBisulfiteSeq
range includes: ExomeSeq
range includes: FIA-MSMS
range includes: FitBark
range includes: Frailtyassessment
range includes: Genotyping
range includes: HI-C
range includes: HiChIPseq
range includes: Highcontentscreen
range includes: HPLC
range includes: HPLC-MSMS
range includes: Immunocytochemistry
range includes: Immunofluorescence
range includes: Immunohistochemistry
range includes: Invivobioluminescence
range includes: ISOSeq
range includes: JumpingLibrary
range includes: Kinestheticbehavior
range includes: Labelfreemassspectrometry
range includes: LaserSpeckleImaging
range includes: LC-MS
range includes: LC-MSMS
range includes: LC-SRM
range includes: LeidenOxylipins
range includes: LentiMPRA
range includes: LFP
range includes: Liquidchromatography-electrochemicaldetection
range includes: LncrnaSeq
range includes: Locomotoractivationbehavior
range includes: Long-readrnaSeq
range includes: LTP
range includes: MDMS-SL
range includes: Memorybehavior
range includes: Metabolon
range includes: MethylationArray
range includes: MIB/MS
range includes: MicroRNAcounts
range includes: MirnaArray
range includes: MirnaSeq
range includes: MRI
range includes: MRNAcounts
range includes: MudPIT
range includes: M6A-rnaSeq
range includes: NextGenerationTargetedSequencing
range includes: NightingaleNMR
range includes: NOMe-Seq
range includes: Noveltyresponsebehavior
range includes: Openfieldtest
range includes: OxBS-Seq

ExperimentalDesign
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: experimentalDesign
required: sms:false

HasAlgorithm
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasAlgorithm
required: sms:false

Algorithm
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: algorithm
required: sms:false

HasNotebook
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasNotebook
required: sms:false

Notebook
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: notebook
required: sms:false

HasProtocol
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasProtocol
required: sms:false

Protocol
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: protocol
required: sms:false

HasScript
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasScript
required: sms:false

Script
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: script
required: sms:false

HasSoftware
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasSoftware
required: sms:false

Software
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: software
required: sms:false

HasLibrary
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasLibrary
required: sms:false

Library
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: library
required: sms:false

HasParameters
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasParameters
required: sms:false

Parameters
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: parameters
required: sms:false

HasSettings
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasSettings
required: sms:false

Settings
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: settings
required: sms:false

HasEnvironment
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasEnvironment
required: sms:false

Environment
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: environment
required: sms:false

HasOpertaingSystem
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasOpertaingSystem
required: sms:false

OperatingSystem
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: operatingSystem
required: sms:false

HasProgrammingLanguage
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: hasProgrammingLanguage
required: sms:false

ProgrammingLanguage
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: programmingLanguage
required: sms:false

Component
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: Component
required: sms:false

template
type: Property
comment: TBD
domain includes: AnalysisResultsMetadataTemplate
domain includes: AssayRNAseqTemplate
domain includes: AssayBsSeqTemplate
domain includes: AssayMetabolomicsTemplate
domain includes: AssayMetagenomicsTemplate
domain includes: AssayMicrobiomeTemplate
domain includes: AssayPhenotypeHumanTemplate
domain includes: AssayProteomicsTemplate
domain includes: AssayScRNAseqTemplate
domain includes: AssayWholeGenomeSequencingTemplate
domain includes: BiospecimenHumanTemplate
domain includes: BiospecimenNonHumanTemplate
domain includes: ComputationalToolsTemplate
domain includes: FileAnnotationTemplate
domain includes: GenotypingHumanTemplate
domain includes: IndividualHumanTemplate
domain includes: IndividualNonHumanTemplate
domain includes: StudyFolderTemplate
is part of: schema.biothings.io
display name: template
required: sms:false

ModelSystemType
type: Class
comment: Type of model system
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Animal
range includes: Cerebralorganoid
range includes: Immortalizedcellline
range includes: IPSC
range includes: Organoid
range includes: Primarycellculture
range includes: Notassigned
display name: ModelSystemType
required: sms:false

Animal
type: Class
comment: TBD
subclass of: ModelSystemType
is part of: schema.biothings.io
display name: animal
required: sms:false

Cerebralorganoid
type: Class
comment: TBD
subclass of: ModelSystemType
is part of: schema.biothings.io
display name: cerebral organoid
required: sms:false

Immortalizedcellline
type: Class
comment: TBD
subclass of: ModelSystemType
is part of: schema.biothings.io
display name: immortalized cell line
required: sms:false

IPSC
type: Class
comment: TBD
subclass of: ModelSystemType
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC
required: sms:false

Organoid
type: Class
comment: TBD
subclass of: ModelSystemType
subclass of: SpecimenType
is part of: schema.biothings.io
display name: organoid
required: sms:false

Primarycellculture
type: Class
comment: TBD
subclass of: ModelSystemType
is part of: schema.biothings.io
display name: primary cell culture
required: sms:false

Notassigned
type: Class
comment: TBD
subclass of: IsModelSystem
subclass of: Consortium
subclass of: IsMultiSpecimen
subclass of: ProjectShortName
subclass of: DataSubtype
subclass of: ModelSystemType
subclass of: ResourceType
subclass of: GrantNumber
subclass of: AnalysisType
subclass of: FileFormat
is part of: schema.biothings.io
display name: Not assigned
required: sms:false

manifestColumn
type: Property
comment: TBD
domain includes: ModelSystemType
domain includes: IsModelSystem
domain includes: DNAextraction
domain includes: AcquisitionBatchID
domain includes: AcquisitionBatchSize
domain includes: AcquisitionBatchSizeUnit
domain includes: AcquisitionMode
domain includes: AcquisitionSoftware
domain includes: AcquisitionSoftwareVersion
domain includes: Adapters
domain includes: AdjustedCovariates
domain includes: AnalysisType
domain includes: ArrayInformation
domain includes: ArrayManufacturer
domain includes: AssemblyName
domain includes: AssemblyQual
domain includes: AssemblySoftware
domain includes: AssociatedResource
domain includes: BackgroundTrait
domain includes: BatchID
domain includes: BatchLabel
domain includes: CaptivityDuration
domain includes: CaptivityStatus
domain includes: CommonName
domain includes: ConsentGroupID
domain includes: Consortium
domain includes: ConversionRatio
domain includes: ConversionRatioUnits
domain includes: CountryCode
domain includes: DataFile
domain includes: DataModelVersion
domain includes: DataSubtype
domain includes: DataType
domain includes: DataTypeAll
domain includes: DatabaseLibrary
domain includes: DatabaseName
domain includes: DatabaseSource
domain includes: DatabaseVersion
domain includes: DatabaseWeblink
domain includes: DiagnosisStatus
domain includes: DigestionMethod
domain includes: DigestionReagent
domain includes: DnaBatchID
domain includes: DnaBatchSize
domain includes: DnaBatchSizeUnit
domain includes: Enrichment
domain includes: EnrichmentMethod
domain includes: EnrichmentStrategy
domain includes: EthnicGroupCode
domain includes: ExperimentType
domain includes: ExperimentalBatchSizeUnit
domain includes: ExperimentalFactor
domain includes: ExtractionMethod
domain includes: FieldCenterCode
domain includes: FileFormat
domain includes: FractionIdentifier
domain includes: GasFlowTemperature
domain includes: GasFlowTemperatureUnit
domain includes: GenotypeTechnology
domain includes: HasAssayControl
domain includes: HasIonizationSource
domain includes: Imputation
domain includes: ImputationPanel
domain includes: ImputationSoftware
domain includes: InstrumentModel
domain includes: IonProperty
domain includes: IsobaricLabelingReagent
domain includes: LabelFreeQuantitation
domain includes: LabelQuantitation
domain includes: LensVoltages
domain includes: LensVoltagesUnit
domain includes: LibLayout
domain includes: LibReadsSeqd
domain includes: LibSize
domain includes: LibVector
domain includes: LibraryBatchID
domain includes: LifeStage

IsModelSystem
type: Class
comment: Boolean flag indicating whether or not a file has data from a model system
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: True
range includes: False
range includes: Notassigned
display name: isModelSystem
required: sms:true

True
type: Class
comment: TBD
subclass of: IsModelSystem
subclass of: IsMultiSpecimen
is part of: schema.biothings.io
display name: true
required: sms:false

False
type: Class
comment: TBD
subclass of: IsModelSystem
is part of: schema.biothings.io
display name: False
required: sms:false

DNAextraction
type: Class
comment: DNA extraction kit method. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: DNAextraction
required: sms:true

AcquisitionBatchID
type: Class
comment: Acquisition batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionBatchID
required: sms:false

AcquisitionBatchSize
type: Class
comment: The number of samples
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionBatchSize
required: sms:false

AcquisitionBatchSizeUnit
type: Class
comment: The unit of measurement for number of samples in a batch
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionBatchSizeUnit
required: sms:false

AcquisitionMode
type: Class
comment: The specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated (full scan, MSn, SIM, MRM, etc.). Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionMode
required: sms:true

AcquisitionSoftware
type: Class
comment: The name of the acquisition software used. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionSoftware
required: sms:true

AcquisitionSoftwareVersion
type: Class
comment: The version number of software used. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: acquisitionSoftwareVersion
required: sms:true

Adapters
type: Class
comment: Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters. Example - 'AATGATACGGCGACCACCGAGATCTACACGCT; CAAGCAGAAGACGGCATACGAGAT'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: adapters
required: sms:true

AdjustedCovariates
type: Class
comment: Any covariates the GWAS is adjusted for. Multiple values can be listed separately by a semicolon (;). Example - age;sex
subclass of: manifestColumn
is part of: schema.biothings.io
display name: adjustedCovariates
required: sms:false

ANOVA
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: ANOVA
required: sms:false

Batcheffectcorrection
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: batch effect correction
required: sms:false

Clustering
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: clustering
required: sms:false

Datanormalization
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: data normalization
required: sms:false

De-novoassembly
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: de-novo assembly
required: sms:false

Doseresponsestudy
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: dose response study
required: sms:false

Enrichmentanalysis
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: enrichment analysis
required: sms:false

Genome-wideassociation
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: genome-wide association
required: sms:false

Mendelianrandomizationanalysis
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: mendelian randomization analysis
required: sms:false

Networkanalysis
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: network analysis
required: sms:false

Polygenicriskscores
type: Class
comment: TBD
subclass of: AnalysisType
is part of: schema.biothings.io
display name: polygenic risk scores
required: sms:false

ArrayInformation
type: Class
comment: Additional information about the genotyping array. For example, for targeted arrays, please provide the specific type of array. Example - Immunochip
subclass of: manifestColumn
is part of: schema.biothings.io
display name: arrayInformation
required: sms:false

ArrayManufacturer
type: Class
comment: Manufacturer of the genotyping array used for the discovery stage. Separate multiple manufacturers by a semicolon (;). Example - Illumina, Affymetrix, Perlegen
subclass of: manifestColumn
is part of: schema.biothings.io
display name: arrayManufacturer
required: sms:false

AssemblyName
type: Class
comment: Name/version of the assembly provided by the submitter used in the genome browsers and the community. Example - 'HuRef, JCVI_ISG_3_1.0'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: assemblyName
required: sms:true

AssemblyQual
type: Class
comment: Assembly quality. The assembly quality category is based on sets of criteria outlined for each assembly quality category.High Quality- Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs.Medium Quality- Many fragments with little to no review of assembly other than reporting of standard assembly statistics.Low Quality- Many fragments with little to no review of assembly other than reporting of standard assembly statistics. Assembly statistics include, but are not limited to, total assembly size, number of contigs, contig N50/L50, and maximum contig length. Example values - high-quality genome, medium-quality genome, low-quality genome
subclass of: manifestColumn
is part of: schema.biothings.io
display name: assemblyQual
required: sms:true

AssemblySoftware
type: Class
comment: Tool(s) used for assembly, including version number and parameters. Example - 'metaSPAdes;3.11.0; kmer set 21,33,55,77,99,121, default parameters otherwise'. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: assemblySoftware
required: sms:true

AssociatedResource
type: Class
comment: Relevant electronic resources. A related resource that is referenced, cited, or otherwise associated to the sequence. Example - 'http-//www.earthmicrobiome.org/'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: associatedResource
required: sms:true

BackgroundTrait
type: Class
comment: Any background trait(s) shared by all individuals in the GWAS (e.g. in both cases and controls). Example - Nicotine dependence
subclass of: manifestColumn
is part of: schema.biothings.io
display name: backgroundTrait
required: sms:false

BatchID
type: Class
comment: ID used to identify a batch, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse
subclass of: manifestColumn
is part of: schema.biothings.io
display name: batchID
required: sms:false

BatchLabel
type: Class
comment: Used to supply batch label information with any string value
subclass of: manifestColumn
is part of: schema.biothings.io
display name: batchLabel
required: sms:false

CaptivityDuration
type: Class
comment: The duration of captivity in months for the individuals in captivity (formatted in months, ex. 72 months).note- Applicable only to animals with captivity status captive.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: captivityDuration
required: sms:false

CaptivityStatus
type: Class
comment: The status of the individual with regard to captivity.note- Wild, captive, and stranded values are applicable, especially for marine mammals. Depending on life stage terminology for individual species, other values are possible. Please let the data curation team know.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Captive
range includes: Stranded
range includes: Wild
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: unknown
display name: captivityStatus
required: sms:true

Captive
type: Class
comment: TBD
subclass of: CaptivityStatus
is part of: schema.biothings.io
display name: Captive
required: sms:false

Stranded
type: Class
comment: TBD
subclass of: CaptivityStatus
subclass of: ReadStrandOrigin
is part of: schema.biothings.io
display name: stranded
required: sms:false

Wild
type: Class
comment: TBD
subclass of: CaptivityStatus
is part of: schema.biothings.io
display name: Wild
required: sms:false

Notapplicable
type: Class
comment: TBD
subclass of: MsTarget
subclass of: RunType
subclass of: Stage
subclass of: FastingState
subclass of: ResultUnit
subclass of: SpecimenType
subclass of: Ethnicity
subclass of: Sex
subclass of: CaptivityStatus
subclass of: LifeStage
subclass of: TranscriptType
subclass of: NucleicAcidSource
subclass of: EnrichmentStrategy
subclass of: Cohort
subclass of: DirectionalBSseqLibrary
subclass of: LabelFreeQuantitation
subclass of: SpeciesGroup
subclass of: TreatmentDurationUnit
subclass of: Race
subclass of: ReadStrandOrigin
subclass of: DataType
subclass of: DataTypeAll
subclass of: DigestionReagent
subclass of: LibraryPreparationMethod
subclass of: Organ
subclass of: LibraryPrep
subclass of: RepositoryName
subclass of: CellType
subclass of: DnaBatchSizeUnit
subclass of: SpeciesName
subclass of: Assay
is part of: schema.biothings.io
display name: Not applicable
required: sms:false

Notcollected
type: Class
comment: TBD
subclass of: RunType
subclass of: MsTarget
subclass of: Stage
subclass of: FastingState
subclass of: ResultUnit
subclass of: SpecimenType
subclass of: Ethnicity
subclass of: Sex
subclass of: DirectionalBSseqLibrary
subclass of: CaptivityStatus
subclass of: LifeStage
subclass of: TranscriptType
subclass of: NucleicAcidSource
subclass of: Cohort
subclass of: ReadStrandOrigin
subclass of: EnrichmentStrategy
subclass of: SpeciesGroup
subclass of: TreatmentDurationUnit
subclass of: Race
subclass of: LabelFreeQuantitation
subclass of: LabelQuantitation
subclass of: DataType
subclass of: DataTypeAll
subclass of: DigestionReagent
subclass of: LibraryPreparationMethod
subclass of: Organ
subclass of: LibraryPrep
subclass of: RepositoryName
subclass of: CellType
subclass of: DnaBatchSizeUnit
subclass of: SpeciesName
subclass of: Assay
is part of: schema.biothings.io
display name: Not collected
required: sms:false

Notspecified
type: Class
comment: TBD
subclass of: RunType
subclass of: MsTarget
subclass of: Stage
subclass of: TreatmentTemperatureUnit
subclass of: FastingState
subclass of: ResultUnit
subclass of: SpecimenType
subclass of: Sex
subclass of: CaptivityStatus
subclass of: LifeStage
subclass of: TranscriptType
subclass of: NucleicAcidSource
subclass of: DirectionalBSseqLibrary
subclass of: Cohort
subclass of: ReadStrandOrigin
subclass of: EnrichmentStrategy
subclass of: SpeciesGroup
subclass of: TreatmentDurationUnit
subclass of: LabelFreeQuantitation
subclass of: LabelQuantitation
subclass of: DataType
subclass of: DataTypeAll
subclass of: DigestionReagent
subclass of: Organ
subclass of: LibraryPreparationMethod
subclass of: LibraryPrep
subclass of: RepositoryName
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
subclass of: CellType
subclass of: SpeciesName
subclass of: Assay
is part of: schema.biothings.io
display name: Not specified
required: sms:false

Other
type: Class
comment: TBD
subclass of: Stage
subclass of: StudyCode
subclass of: Sex
subclass of: CaptivityStatus
subclass of: LifeStage
subclass of: TranscriptType
subclass of: Cohort
subclass of: DataType
subclass of: DataTypeAll
subclass of: RepositoryName
subclass of: Organ
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: CellType
subclass of: SpeciesName
subclass of: Assay
is part of: schema.biothings.io
display name: other
required: sms:false

unknown
type: Property
comment: TBD
domain includes: Contributor
domain includes: DisplayName
domain includes: Documentation
domain includes: Grants
domain includes: Institution
domain includes: Project
domain includes: Summary
is part of: schema.biothings.io
display name: Unknown
required: sms:false

CommonName
type: Class
comment: The biological species common name the individual belongs to (ex. "Horned Lark"). note- As a default, the valid scientific name for the species should be indicated.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: commonName
required: sms:true

ConsentGroupID
type: Class
comment: Indicate the consent group for the individual, provided by the data contributor's data dictionary
subclass of: manifestColumn
is part of: schema.biothings.io
display name: consentGroupID
required: sms:true

Consortium
type: Class
comment: The name of the consortium
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ELITE
range includes: ELITECDCP
range includes: Notassigned
display name: consortium
required: sms:true

ELITE
type: Class
comment: TBD
subclass of: Consortium
subclass of: Program
is part of: schema.biothings.io
display name: ELITE
required: sms:false

ELITECDCP
type: Class
comment: TBD
subclass of: Consortium
is part of: schema.biothings.io
display name: ELITE CDCP
required: sms:false

ConversionRatio
type: Class
comment: The ratio or % detailing how well the bisulfite conversion worked. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: conversionRatio
required: sms:true

ConversionRatioUnits
type: Class
comment: The units of measurement. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: conversionRatioUnits
required: sms:true

CountryCode
type: Class
comment: Indicate the geographic region for the individual (shown as ex. "840")
subclass of: manifestColumn
is part of: schema.biothings.io
display name: countryCode
required: sms:true

DataFile
type: Class
comment: Name of additional file(s) accompanying the data. The file(s) provide, for example, the name of any raw files generated by the instrument, generated reports from a vendor, an Rscript, or an instructions document. The files can be instrument raw files, converted peak lists such as mzML, MGF, or result files like mzIdentML. The files can be additional documentation submitted alongside the data needed for reuse and sharing purposes. Provide the file names of any additional files submitted alongside the data (ex., an ADAT file). Multiple file names can be separated by (;)Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: dataFile
required: sms:true

DataModelVersion
type: Class
comment: Version of the data model
subclass of: Thing
is part of: schema.biothings.io
display name: dataModelVersion
required: sms:false

DataSubtype
type: Class
comment: Further qualification of dataType, which may be used to indicate the state of processing of the data, aggregation of the data, or presence of metadata
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Raw
range includes: Processed
range includes: Results
range includes: Normalized
range includes: Metadata
range includes: Notassigned
display name: dataSubtype
required: sms:true

Raw
type: Class
comment: TBD
subclass of: DataSubtype
is part of: schema.biothings.io
display name: raw
required: sms:false

Processed
type: Class
comment: TBD
subclass of: DataSubtype
is part of: schema.biothings.io
display name: processed
required: sms:false

Results
type: Class
comment: TBD
subclass of: DataSubtype
is part of: schema.biothings.io
display name: results
required: sms:false

Normalized
type: Class
comment: TBD
subclass of: DataSubtype
is part of: schema.biothings.io
display name: normalized
required: sms:false

Metadata
type: Class
comment: TBD
subclass of: ResourceType
subclass of: DataSubtype
is part of: schema.biothings.io
display name: metadata
required: sms:false

DataType
type: Class
comment: TBD
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Clinical
range includes: DrugScreen
range includes: Electrophysiology
range includes: Epigenetics
range includes: GeneExpression
range includes: GenomeAssembly
range includes: GenomicVariants
range includes: Imaging
range includes: Lipidomics
range includes: Metabolomics
range includes: Metagenomics
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: Phenotype
range includes: Proteomics
range includes: unknown
range includes: WearableData
display name: dataType
required: sms:true

Clinical
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: clinical
required: sms:false

DrugScreen
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: drugScreen
required: sms:false

Electrophysiology
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: electrophysiology
required: sms:false

Epigenetics
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: epigenetics
required: sms:false

GeneExpression
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: geneExpression
required: sms:false

GenomeAssembly
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: genomeAssembly
required: sms:false

GenomicVariants
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: genomicVariants
required: sms:false

Imaging
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: imaging
required: sms:false

Lipidomics
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: lipidomics
required: sms:false

Metabolomics
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: metabolomics
required: sms:false

Metagenomics
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: metagenomics
required: sms:false

Phenotype
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: phenotype
required: sms:false

Proteomics
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: proteomics
required: sms:false

WearableData
type: Class
comment: TBD
subclass of: DataType
subclass of: DataTypeAll
is part of: schema.biothings.io
display name: wearableData
required: sms:false

DatabaseLibrary
type: Class
comment: The name(s) of the associated database library. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: databaseLibrary
required: sms:true

DatabaseName
type: Class
comment: The name of the search database (nr, SwissProt or est_human, and/or mass spectral library). Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: databaseName
required: sms:true

DatabaseSource
type: Class
comment: The name of the organization, project, or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).
subclass of: manifestColumn
is part of: schema.biothings.io
display name: databaseSource
required: sms:true

DatabaseVersion
type: Class
comment: The version of the database. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: databaseVersion
required: sms:true

DatabaseWeblink
type: Class
comment: An internet address that may provide details of a database or software search, as well as for labs that generate their own search method (web link). Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: databaseWeblink
required: sms:true

DiagnosisStatus
type: Class
comment: Whether the individual has been diagnosed with a condition or disease (physical and/or cognitive), \True" indicates the individual has been diagnosed"
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FALSE
range includes: TRUE
display name: diagnosisStatus
required: sms:true

FALSE
type: Class
comment: TBD
subclass of: DiagnosisStatus
subclass of: UseReagent
subclass of: FastingState
subclass of: IsStranded
subclass of: IsPostMortem
subclass of: DirectionalBSseqLibrary
is part of: schema.biothings.io
display name: FALSE
required: sms:false

TRUE
type: Class
comment: TBD
subclass of: IsPostMortem
subclass of: DirectionalBSseqLibrary
subclass of: DiagnosisStatus
subclass of: UseReagent
subclass of: IsStranded
subclass of: FastingState
is part of: schema.biothings.io
display name: TRUE
required: sms:false

DigestionMethod
type: Class
comment: The type of digestion (ex. in-solution, in-gel)Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: digestionMethod
required: sms:true

DigestionReagent
type: Class
comment: Enzymes or reagents used for digestion.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: 2-iodobenzoate
range includes: Arg-C
range includes: Asp-N
range includes: Asp-NAmbic
range includes: Chymotrypsin
range includes: CNBr
range includes: FormicAcid
range includes: Glutamylendopeptidase
range includes: Leukocyteelastase
range includes: Lys-C
range includes: Lys-C/P
range includes: Nocleavage
range includes: NoEnzyme
range includes: Notapplicable
range includes: Notavailable
range includes: Notcollected
range includes: Notspecified
range includes: PepsinA
range includes: Prolineendopeptidase
range includes: TrypChymo
range includes: Trypsin
range includes: Trypsin/P
range includes: unknown
range includes: Unspecificcleavage
range includes: V8-DE
range includes: V8-E
display name: digestionReagent
required: sms:true

2-iodobenzoate
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: 2-iodobenzoate
required: sms:false

Arg-C
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Arg-C
required: sms:false

Asp-N
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Asp-N
required: sms:false

Asp-NAmbic
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Asp-N_ambic
required: sms:false

Chymotrypsin
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Chymotrypsin
required: sms:false

CNBr
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: CNBr
required: sms:false

FormicAcid
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Formic_acid
required: sms:false

Glutamylendopeptidase
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Glutamyl endopeptidase
required: sms:false

Leukocyteelastase
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Leukocyte elastase
required: sms:false

Lys-C
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Lys-C
required: sms:false

Lys-C/P
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Lys-C/P
required: sms:false

Nocleavage
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: No cleavage
required: sms:false

NoEnzyme
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: NoEnzyme
required: sms:false

Notavailable
type: Class
comment: TBD
subclass of: MsTarget
subclass of: EnrichmentStrategy
subclass of: LabelFreeQuantitation
subclass of: LabelQuantitation
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Not available
required: sms:false

PepsinA
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: PepsinA
required: sms:false

Prolineendopeptidase
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Proline endopeptidase
required: sms:false

TrypChymo
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: TrypChymo
required: sms:false

Trypsin
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Trypsin
required: sms:false

Trypsin/P
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Trypsin/P
required: sms:false

Unspecificcleavage
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: Unspecific cleavage
required: sms:false

V8-DE
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: V8-DE
required: sms:false

V8-E
type: Class
comment: TBD
subclass of: DigestionReagent
is part of: schema.biothings.io
display name: V8-E
required: sms:false

DnaBatchID
type: Class
comment: DNA isolation batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: dnaBatchID
required: sms:true

DnaBatchSize
type: Class
comment: The number of samples. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: dnaBatchSize
required: sms:true

DnaBatchSizeUnit
type: Class
comment: The unit of measurement for number of samples in a batch
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AFU
range includes: AI
range includes: AU/ml
range includes: Bpg/dl
range includes: DKunits/ml
range includes: G/l
range includes: Gm
range includes: HAU
range includes: IU
range includes: Iu/l
range includes: IU/ml
range includes: KallikreinInactivatorUnitperMilliliter
range includes: Kg
range includes: L
range includes: M
range includes: Mg
range includes: Mg/dl
range includes: Mg/l
range includes: Mg/ml
range includes: Miu/ml
range includes: Ml
range includes: MM
range includes: MOI
range includes: Ng
range includes: Ng/dl
range includes: Ng/ml
range includes: Ng/nl
range includes: Ng/ul
range includes: Nl
range includes: NM
range includes: Notspecified
range includes: NPX
range includes: Opticaldensity
range includes: Other
range includes: PFU
range includes: PFUe
range includes: Pg
range includes: Pg/mgcreatinine
range includes: Pg/ml
range includes: Pg/nl
range includes: Pg/ul
range includes: Pl
range includes: PM
range includes: Pound
range includes: TCID50
range includes: Ug
range includes: Ug/dl
range includes: Ug/l
range includes: Ug/ml
range includes: Ug/ul
range includes: Uiu/ml
range includes: Ul
range includes: UM
range includes: Umol/l
range includes: Units/ml
range includes: unknown
range includes: Notcollected
range includes: Notapplicable
display name: dnaBatchSizeUnit
required: sms:true

AFU
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: AFU
required: sms:false

AI
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: AI
required: sms:false

AU/ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: AU/ml
required: sms:false

Bpg/dl
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: bp g/dl
required: sms:false

DKunits/ml
type: Class
comment: TBD
subclass of: TreatmentAmountUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: DK units/ml
required: sms:false

G/l
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: g/l
required: sms:false

Gm
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: gm
required: sms:false

HAU
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: HAU
required: sms:false

IU
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: IU
required: sms:false

Iu/l
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: iu/l
required: sms:false

IU/ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: IU/ml
required: sms:false

KallikreinInactivatorUnitperMilliliter
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: Kallikrein Inactivator Unit per Milliliter
required: sms:false

Kg
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: kg
required: sms:false

L
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: l
required: sms:false

M
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: M
required: sms:false

Mg
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: mg
required: sms:false

Mg/dl
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: mg/dl
required: sms:false

Mg/l
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: mg/l
required: sms:false

Mg/ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: mg/ml
required: sms:false

Miu/ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: miu/ml
required: sms:false

Ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ml
required: sms:false

MM
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: mM
required: sms:false

MOI
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: MOI
required: sms:false

Ng
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ng
required: sms:false

Ng/dl
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ng/dl
required: sms:false

Ng/ml
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ng/ml
required: sms:false

Ng/nl
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ng/nl
required: sms:false

Ng/ul
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: ng/ul
required: sms:false

Nl
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: nl
required: sms:false

NM
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: nM
required: sms:false

NPX
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: NPX
required: sms:false

Opticaldensity
type: Class
comment: TBD
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
subclass of: VacuumPressureUnit
is part of: schema.biothings.io
display name: optical density
required: sms:false

PFU
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: PFU
required: sms:false

PFUe
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: PFUe
required: sms:false

Pg
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pg
required: sms:false

Pg/mgcreatinine
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pg/mg creatinine
required: sms:false

Pg/ml
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pg/ml
required: sms:false

Pg/nl
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pg/nl
required: sms:false

Pg/ul
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pg/ul
required: sms:false

Pl
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pl
required: sms:false

PM
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: pM
required: sms:false

Pound
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: Pound
required: sms:false

TCID50
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: TCID50
required: sms:false

Ug
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ug
required: sms:false

Ug/dl
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ug/dl
required: sms:false

Ug/l
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ug/l
required: sms:false

Ug/ml
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ug/ml
required: sms:false

Ug/ul
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ug/ul
required: sms:false

Uiu/ml
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: uiu/ml
required: sms:false

Ul
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: ul
required: sms:false

UM
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: uM
required: sms:false

Umol/l
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: umol/l
required: sms:false

Units/ml
type: Class
comment: TBD
subclass of: VacuumPressureUnit
subclass of: DnaBatchSizeUnit
subclass of: RnaBatchSizeUnit
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: units/ml
required: sms:false

Enrichment
type: Class
comment: Protocol or reagent used for enrichment (ex. Fe3+NTA-Agarose (Qiagen)Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: enrichment
required: sms:true

EnrichmentMethod
type: Class
comment: The method used for performing an enrichment of specific regions by a restriction enzyme digest. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: enrichmentMethod
required: sms:true

EnrichmentStrategy
type: Class
comment: Type of peptide or protein enrichment
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AcetylomeProteome
range includes: Glycoproteome
range includes: Lipidome
range includes: Metabolome
range includes: Notapplicable
range includes: Notavailable
range includes: Notcollected
range includes: Notspecified
range includes: Phosphoproteome
range includes: Ubiquitylome
range includes: unknown
display name: enrichmentStrategy
required: sms:true

AcetylomeProteome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Acetylome Proteome
required: sms:false

Glycoproteome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Glycoproteome
required: sms:false

Lipidome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Lipidome
required: sms:false

Metabolome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Metabolome
required: sms:false

Phosphoproteome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Phosphoproteome
required: sms:false

Ubiquitylome
type: Class
comment: TBD
subclass of: EnrichmentStrategy
is part of: schema.biothings.io
display name: Ubiquitylome
required: sms:false

EthnicGroupCode
type: Class
comment: A coded value specifying the self-declared ethnic origination independent of racial origination, provided by the data contributor's data dictionary
subclass of: manifestColumn
is part of: schema.biothings.io
display name: ethnicGroupCode
required: sms:false

ExperimentType
type: Class
comment: The type of experiment used. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: experimentType
required: sms:true

ExperimentalBatchSizeUnit
type: Class
comment: The unit of measurement for number of samples in a experimental batch
subclass of: manifestColumn
is part of: schema.biothings.io
display name: experimentalBatchSizeUnit
required: sms:false

ExperimentalFactor
type: Class
comment: Variable aspects of an experiment design that can be used to describe an experiment or set of experiments in an increasingly detailed manner.This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). Example - 'time series design [EFO-0001779]'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: experimentalFactor
required: sms:true

ExtractionMethod
type: Class
comment: The name of the process used to separate a desired component of an input material from the remainder. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: extractionMethod
required: sms:true

FieldCenterCode
type: Class
comment: Name of the field center
subclass of: manifestColumn
is part of: schema.biothings.io
display name: fieldCenterCode
required: sms:true

FileFormat
type: Class
comment: Defined format of the data file, typically corresponding to extension, but sometimes indicating more general group of files produced by the same tool or software
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FASTQ
range includes: FASTA
range includes: SAM
range includes: BAM
range includes: CRAM
range includes: VCF
range includes: BCF
range includes: GTF
range includes: GFF
range includes: GFF3
range includes: BED
range includes: BigBed
range includes: WIG
range includes: BigWig
range includes: CSV
range includes: TSV
range includes: MTX
range includes: H5AD
range includes: LOOM
range includes: RDS
range includes: PED
range includes: MAP
range includes: BEDPLINK
range includes: TPED
range includes: TFAM
range includes: BEDGRAPH
range includes: NARROWPEAK
range includes: BROADPEAK
range includes: TAGALIGN
range includes: OME-TIFF
range includes: ND2
range includes: CZI
range includes: LSM
range includes: H5
range includes: HDF5
range includes: PARQUET
range includes: PDB
range includes: MMCIF
range includes: JSON
range includes: YAML
range includes: XML
range includes: TXT
range includes: XLSX
range includes: Notassigned
display name: fileFormat
required: sms:true

FASTQ
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: FASTQ
required: sms:false

FASTA
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: FASTA
required: sms:false

SAM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: SAM
required: sms:false

BAM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BAM
required: sms:false

CRAM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: CRAM
required: sms:false

VCF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: VCF
required: sms:false

BCF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BCF
required: sms:false

GTF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: GTF
required: sms:false

GFF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: GFF
required: sms:false

GFF3
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: GFF3
required: sms:false

BED
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BED
required: sms:false

BigBed
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BigBed
required: sms:false

WIG
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: WIG
required: sms:false

BigWig
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BigWig
required: sms:false

CSV
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: CSV
required: sms:false

TSV
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: TSV
required: sms:false

MTX
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: MTX
required: sms:false

H5AD
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: H5AD
required: sms:false

LOOM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: LOOM
required: sms:false

RDS
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: RDS
required: sms:false

PED
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: PED
required: sms:false

MAP
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: MAP
required: sms:false

BEDPLINK
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BED_PLINK
required: sms:false

TPED
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: TPED
required: sms:false

TFAM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: TFAM
required: sms:false

BEDGRAPH
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BEDGRAPH
required: sms:false

NARROWPEAK
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: NARROWPEAK
required: sms:false

BROADPEAK
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: BROADPEAK
required: sms:false

TAGALIGN
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: TAGALIGN
required: sms:false

OME-TIFF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: OME-TIFF
required: sms:false

ND2
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: ND2
required: sms:false

CZI
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: CZI
required: sms:false

LSM
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: LSM
required: sms:false

H5
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: H5
required: sms:false

HDF5
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: HDF5
required: sms:false

PARQUET
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: PARQUET
required: sms:false

PDB
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: PDB
required: sms:false

MMCIF
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: MMCIF
required: sms:false

JSON
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: JSON
required: sms:false

YAML
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: YAML
required: sms:false

XML
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: XML
required: sms:false

TXT
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: TXT
required: sms:false

XLSX
type: Class
comment: TBD
subclass of: FileFormat
is part of: schema.biothings.io
display name: XLSX
required: sms:false

FractionIdentifier
type: Class
comment: Number of fractions in the experimental runProvide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: fractionIdentifier
required: sms:true

GasFlowTemperature
type: Class
comment: e.g., nebulization gas, cone gas, etc.Unit of measure-C, F, K, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: gasFlowTemperature
required: sms:false

GasFlowTemperatureUnit
type: Class
comment: Unit of gas flow temperature
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: C
range includes: F
range includes: K
display name: gasFlowTemperatureUnit
required: sms:false

C
type: Class
comment: TBD
subclass of: GasFlowTemperatureUnit
subclass of: TreatmentTemperatureUnit
is part of: schema.biothings.io
display name: C
required: sms:false

F
type: Class
comment: TBD
subclass of: GasFlowTemperatureUnit
subclass of: TreatmentTemperatureUnit
is part of: schema.biothings.io
display name: F
required: sms:false

K
type: Class
comment: TBD
subclass of: GasFlowTemperatureUnit
subclass of: TreatmentTemperatureUnit
is part of: schema.biothings.io
display name: K
required: sms:false

GenotypeTechnology
type: Class
comment: Method(s) used to genotype variants in the discovery stage. Separate multiple methods separated by a semicolon (;). Example - genome-wide genotyping array, exome-wide sequencing, targeted genotyping array
subclass of: manifestColumn
is part of: schema.biothings.io
display name: genotypeTechnology
required: sms:true

HasAssayControl
type: Class
comment: Boolean flag indicating whether or not a specimen is a technical or assay control. Examples include study pools or reference pools, blanks, or internal standards.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: hasAssayControl
required: sms:false

HasIonizationSource
type: Class
comment: Were the ionization conditions recorded to enable reproduction of the experiment?
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: No
range includes: Yes
display name: hasIonizationSource
required: sms:false

No
type: Class
comment: TBD
subclass of: HasIonizationSource
subclass of: FamilyStudyParticipant
subclass of: HasADLs
subclass of: HasCASI
subclass of: HasCDR
subclass of: HasMMSE
subclass of: HasMoCA
is part of: schema.biothings.io
display name: No
required: sms:false

Yes
type: Class
comment: TBD
subclass of: FamilyStudyParticipant
subclass of: HasADLs
subclass of: HasCASI
subclass of: HasCDR
subclass of: HasMMSE
subclass of: HasMoCA
subclass of: HasIonizationSource
is part of: schema.biothings.io
display name: Yes
required: sms:false

Imputation
type: Class
comment: Were SNPs imputed for the discovery GWAS?
subclass of: manifestColumn
is part of: schema.biothings.io
display name: imputation
required: sms:true

ImputationPanel
type: Class
comment: Panel used for imputation. Example - 1000 Genomes Phase 3
subclass of: manifestColumn
is part of: schema.biothings.io
display name: imputationPanel
required: sms:false

ImputationSoftware
type: Class
comment: Imputation software. Example - IMPUTE
subclass of: manifestColumn
is part of: schema.biothings.io
display name: imputationSoftware
required: sms:false

InstrumentModel
type: Class
comment: The model of the instrument used. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: instrumentModel
required: sms:true

IonProperty
type: Class
comment: Ion charge state (positive or negative-ion analysis)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Negative
range includes: Positive
display name: ionProperty
required: sms:false

Negative
type: Class
comment: TBD
subclass of: IonProperty
is part of: schema.biothings.io
display name: Negative
required: sms:false

Positive
type: Class
comment: TBD
subclass of: IonProperty
is part of: schema.biothings.io
display name: Positive
required: sms:false

IsobaricLabelingReagent
type: Class
comment: Reagent set used for isobaric labeling. Examples- iTRAQ113 TMT126Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: isobaricLabelingReagent
required: sms:true

LabelFreeQuantitation
type: Class
comment: Type of label-free data analysis strategyProvide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Label-freegenelevelquantitation
range includes: Label-freepeptidelevelquantitation
range includes: Label-freeproteingrouplevelquantitation
range includes: Label-freeproteinlevelquantitation
range includes: Label-freerawfeaturequantitation
range includes: Notapplicable
range includes: Notavailable
range includes: Notcollected
range includes: Notspecified
range includes: unknown
display name: labelFreeQuantitation
required: sms:true

Label-freegenelevelquantitation
type: Class
comment: TBD
subclass of: LabelFreeQuantitation
is part of: schema.biothings.io
display name: Label-free gene level quantitation
required: sms:false

Label-freepeptidelevelquantitation
type: Class
comment: TBD
subclass of: LabelFreeQuantitation
is part of: schema.biothings.io
display name: Label-free peptide level quantitation
required: sms:false

Label-freeproteingrouplevelquantitation
type: Class
comment: TBD
subclass of: LabelFreeQuantitation
is part of: schema.biothings.io
display name: Label-free protein group level quantitation
required: sms:false

Label-freeproteinlevelquantitation
type: Class
comment: TBD
subclass of: LabelFreeQuantitation
is part of: schema.biothings.io
display name: Label-free protein level quantitation
required: sms:false

Label-freerawfeaturequantitation
type: Class
comment: TBD
subclass of: LabelFreeQuantitation
is part of: schema.biothings.io
display name: Label-free raw feature quantitation
required: sms:false

LabelQuantitation
type: Class
comment: Type of labeling usedProvide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AminoxyTMT
range includes: DiART
range includes: DiLeu
range includes: Glyco-TMT
range includes: HydrazideTMT
range includes: IodoTMT
range includes: IPTL
range includes: ITRAQ
range includes: ITRAQH
range includes: LabelFree
range includes: Notavailable
range includes: Notcollected
range includes: Notspecified
range includes: TMT
range includes: unknown
display name: labelQuantitation
required: sms:true

AminoxyTMT
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: AminoxyTMT
required: sms:false

DiART
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: DiART
required: sms:false

DiLeu
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: DiLeu
required: sms:false

Glyco-TMT
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: Glyco-TMT
required: sms:false

HydrazideTMT
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: Hydrazide TMT
required: sms:false

IodoTMT
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: IodoTMT
required: sms:false

IPTL
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: IPTL
required: sms:false

ITRAQ
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: iTRAQ
required: sms:false

ITRAQH
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: iTRAQH
required: sms:false

LabelFree
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: Label Free
required: sms:false

TMT
type: Class
comment: TBD
subclass of: LabelQuantitation
is part of: schema.biothings.io
display name: TMT
required: sms:false

LensVoltages
type: Class
comment: The skimmer/focusing lens voltages e.g., capillary voltage, etc.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: lensVoltages
required: sms:false

LensVoltagesUnit
type: Class
comment: Unit of lens voltages
subclass of: manifestColumn
is part of: schema.biothings.io
display name: lensVoltagesUnit
required: sms:false

LibLayout
type: Class
comment: Library layout. Specify whether to expect single, paired, or other configurations of reads. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libLayout
required: sms:true

LibReadsSeqd
type: Class
comment: Library reads sequenced. Total number of clones sequenced from the library. Example - '20'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libReadsSeqd
required: sms:true

LibSize
type: Class
comment: Library size. Total number of clones in the library prepared for the project. Example - '50'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libSize
required: sms:true

LibVector
type: Class
comment: Library vector. Cloning vector type(s) used in the construction of libraries. Example - 'Bacteriophage P1'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libVector
required: sms:true

LibraryBatchID
type: Class
comment: Library batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libraryBatchID
required: sms:true

LifeStage
type: Class
comment: The life stage of the individual.note- Other values are possible depending on life stage terminology for individual species. Please let the data curation team know.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Adult
range includes: Juvenile
range includes: Post-Juvenile
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: unknown
display name: lifeStage
required: sms:true

Adult
type: Class
comment: TBD
subclass of: LifeStage
is part of: schema.biothings.io
display name: Adult
required: sms:false

Juvenile
type: Class
comment: TBD
subclass of: LifeStage
is part of: schema.biothings.io
display name: Juvenile
required: sms:false

Post-Juvenile
type: Class
comment: TBD
subclass of: LifeStage
is part of: schema.biothings.io
display name: Post-Juvenile
required: sms:false

MeasurementTechnique
type: Class
comment: The name of the measurement technique describing the assay method. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: measurementTechnique
required: sms:true

Mid
type: Class
comment: Multiplex identifiers. Molecular barcodes, called Multiplex Identifiers (MIDs), are used to tag unique samples in a sequencing run specifically. Sequence should be reported in uppercase letters. Example - 'GTGAATAT'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: mid
required: sms:true

ModificationParameters
type: Class
comment: Modification parameters for a search engine run. (ex. PSI- PI http-//www.w3.org/2002/07/owl#Axiom) or used in the peptide identification database search. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: modificationParameters
required: sms:true

MsAnalyteType
type: Class
comment: The type of biospecimen subjected to analysis (ex., peptide, protein, metabolite, lipid)Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: msAnalyteType
required: sms:true

MsAssayTechnique
type: Class
comment: Specified the mass spectrometer technique used or the name of the proteomics assay used (ex. DDA)Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: msAssayTechnique
required: sms:true

MsTarget
type: Class
comment: Specifies whether or not a specific molecule(s) is/are targeted for detection/measurement by the assay
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Notapplicable
range includes: Notavailable
range includes: Notcollected
range includes: Notspecified
range includes: Targeted
range includes: unknown
range includes: Untargeted
display name: msTarget
required: sms:true

Targeted
type: Class
comment: TBD
subclass of: MsTarget
is part of: schema.biothings.io
display name: Targeted
required: sms:false

Untargeted
type: Class
comment: TBD
subclass of: MsTarget
is part of: schema.biothings.io
display name: Untargeted
required: sms:false

NucleAcidExt
type: Class
comment: Nucleic acid extraction. A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample. (example, https-//mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf). Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: nucleAcidExt
required: sms:true

NumberContig
type: Class
comment: Number of contigs. Total number of contigs in the cleaned/submitted assembly that comprise a given genome, SAG, MAG, or UViG. Example - '40'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: numberContig
required: sms:false

NumberIndividuals
type: Class
comment: Number of individuals in a group. Example - 2000
subclass of: manifestColumn
is part of: schema.biothings.io
display name: numberIndividuals
required: sms:true

ProcessingBatchID
type: Class
comment: Processing batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse
subclass of: manifestColumn
is part of: schema.biothings.io
display name: processingBatchID
required: sms:false

Program
type: Class
comment: TBD
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ELITE
range includes: AD
display name: program
required: sms:true

AD
type: Class
comment: TBD
subclass of: Program
is part of: schema.biothings.io
display name: AD
required: sms:false

ProjectShortName
type: Class
comment: TBD
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: LC
range includes: ILO
range includes: LLFS
range includes: LG
range includes: Notassigned
display name: projectShortName
required: sms:true

LC
type: Class
comment: TBD
subclass of: ProjectShortName
subclass of: StudyCode
is part of: schema.biothings.io
display name: LC
required: sms:false

ILO
type: Class
comment: TBD
subclass of: ProjectShortName
subclass of: StudyCode
is part of: schema.biothings.io
display name: ILO
required: sms:false

LLFS
type: Class
comment: TBD
subclass of: ProjectShortName
subclass of: StudyCode
is part of: schema.biothings.io
display name: LLFS
required: sms:false

LG
type: Class
comment: TBD
subclass of: ProjectShortName
subclass of: StudyCode
is part of: schema.biothings.io
display name: LG
required: sms:false

QuantationStrategy
type: Class
comment: The general strategy used for differential analysis Example - Absolute quantitation analysis, Isobaric label quantitation analysis, LC-MS label-free quantitation analysis,Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: quantationStrategy
required: sms:true

ReadLengthUnits
type: Class
comment: The units of measurement. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: readLengthUnits
required: sms:true

ReadmeFile
type: Class
comment: The name of any readme file uploaded to Synapse. Example - example.tsv
subclass of: manifestColumn
is part of: schema.biothings.io
display name: readmeFile
required: sms:false

ReagentCatalogNumber
type: Class
comment: If the assay reagent is a commercial product, enter the vendor's catalog identifier. If the reagent is a custom preparation enter 'NA'.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentCatalogNumber
required: sms:false

ReagentContact
type: Class
comment: The contact information is particularly helpful when the reagent is not from a commercial vendor.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentContact
required: sms:false

ReagentIDs
type: Class
comment: One or more identifiers, separated by a semicolon (;). The reagent identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentIDs
required: sms:false

ReagentLotNumber
type: Class
comment: The lot number is often provided by a reagent source when the reagent is replenished over time.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentLotNumber
required: sms:false

ReagentManufacturer
type: Class
comment: The manufacturer is the source of a reagent and may include commercial vendors as well as non-commercial sources (e.g., collaborating labs).
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentManufacturer
required: sms:false

ReagentName
type: Class
comment: The reagent name is an alternative to the Reagent ID.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentName
required: sms:false

ReagentWeblink
type: Class
comment: An internet address that may provide details of an assay reagent.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reagentWeblink
required: sms:false

ReferenceTranscriptID
type: Class
comment: The ID for the transcript/gene. Either the NCBI ID or the Ensembl ID must be provided. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: referenceTranscriptID
required: sms:true

ReportedTrait
type: Class
comment: The trait under investigation. Please describe the trait concisely but with enough detail to be clear to a non-specialist. Avoid the use of abbreviations; if these are necessary, please define them or their source in the readme file. Example - Reticulocyte count
subclass of: manifestColumn
is part of: schema.biothings.io
display name: reportedTrait
required: sms:true

RepositoryName
type: Class
comment: The public repository name for the transcript (for example, Ensembl or NCBI Gene)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ArrayExpress
range includes: BroadSingleCellPortal
range includes: DbGAP
range includes: ENA
range includes: Ensembl
range includes: FlowRepository
range includes: GenBank
range includes: GENCODEv38GRCh38
range includes: GEO
range includes: GISAID
range includes: IEDB
range includes: ImmPort
range includes: MassIVE
range includes: MetaboLights
range includes: MetabolomicsWorkbench
range includes: MGnify
range includes: NCBIGene
range includes: PRIDE
range includes: SRA
range includes: Synapse
range includes: UniProt
range includes: Other
range includes: unknown
range includes: Notcollected
range includes: Notapplicable
range includes: Notspecified
display name: repositoryName
required: sms:true

ArrayExpress
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: ArrayExpress
required: sms:false

BroadSingleCellPortal
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: Broad Single Cell Portal
required: sms:false

DbGAP
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: dbGAP
required: sms:false

ENA
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: ENA
required: sms:false

Ensembl
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: Ensembl
required: sms:false

FlowRepository
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: FlowRepository
required: sms:false

GenBank
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: GenBank
required: sms:false

GENCODEv38GRCh38
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: GENCODEv38 GRCh38
required: sms:false

GEO
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: GEO
required: sms:false

GISAID
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: GISAID
required: sms:false

IEDB
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: IEDB
required: sms:false

ImmPort
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: ImmPort
required: sms:false

MassIVE
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: MassIVE
required: sms:false

MetaboLights
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: MetaboLights
required: sms:false

MetabolomicsWorkbench
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: Metabolomics Workbench
required: sms:false

MGnify
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: MGnify
required: sms:false

NCBIGene
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: NCBI Gene
required: sms:false

PRIDE
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: PRIDE
required: sms:false

SRA
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: SRA
required: sms:false

Synapse
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: Synapse
required: sms:false

UniProt
type: Class
comment: TBD
subclass of: RepositoryName
is part of: schema.biothings.io
display name: UniProt
required: sms:false

ResourceType
type: Class
comment: The type of resource being stored and annotated
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ExperimentalData
range includes: Metadata
range includes: Tool
range includes: Analysis
range includes: ComputationalNotebook
range includes: SoftwareTool
range includes: Notassigned
display name: resourceType
required: sms:true

ExperimentalData
type: Class
comment: TBD
subclass of: ResourceType
is part of: schema.biothings.io
display name: experimentalData
required: sms:false

Tool
type: Class
comment: TBD
subclass of: ResourceType
is part of: schema.biothings.io
display name: tool
required: sms:false

Analysis
type: Class
comment: TBD
subclass of: ResourceType
is part of: schema.biothings.io
display name: analysis
required: sms:false

ComputationalNotebook
type: Class
comment: TBD
subclass of: ResourceType
is part of: schema.biothings.io
display name: computationalNotebook
required: sms:false

SoftwareTool
type: Class
comment: TBD
subclass of: ResourceType
is part of: schema.biothings.io
display name: softwareTool
required: sms:false

ResultUnit
type: Class
comment: The unit for the result value
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FPKM
range includes: Rawcount
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: RPKM
range includes: TPM
range includes: unknown
display name: resultUnit
required: sms:true

FPKM
type: Class
comment: TBD
subclass of: ResultUnit
is part of: schema.biothings.io
display name: FPKM
required: sms:false

Rawcount
type: Class
comment: TBD
subclass of: ResultUnit
is part of: schema.biothings.io
display name: raw count
required: sms:false

RPKM
type: Class
comment: TBD
subclass of: ResultUnit
is part of: schema.biothings.io
display name: RPKM
required: sms:false

TPM
type: Class
comment: TBD
subclass of: ResultUnit
is part of: schema.biothings.io
display name: TPM
required: sms:false

RnaBatchID
type: Class
comment: Isolation batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: rnaBatchID
required: sms:true

RnaBatchSize
type: Class
comment: The number of samples
subclass of: manifestColumn
is part of: schema.biothings.io
display name: rnaBatchSize
required: sms:false

RnaBatchSizeUnit
type: Class
comment: The unit of measurement for number of samples in a batch
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AFU
range includes: AI
range includes: AU/ml
range includes: Bpg/dl
range includes: DKunits/ml
range includes: G/l
range includes: Gm
range includes: HAU
range includes: IU
range includes: Iu/l
range includes: IU/ml
range includes: KallikreinInactivatorUnitperMilliliter
range includes: Kg
range includes: L
range includes: M
range includes: Mg
range includes: Mg/dl
range includes: Mg/l
range includes: Mg/ml
range includes: Miu/ml
range includes: Ml
range includes: MM
range includes: MOI
range includes: Ng
range includes: Ng/dl
range includes: Ng/ml
range includes: Ng/nl
range includes: Ng/ul
range includes: Nl
range includes: NM
range includes: Notspecified
range includes: NPX
range includes: Opticaldensity
range includes: Other
range includes: PFU
range includes: PFUe
range includes: Pg
range includes: Pg/mgcreatinine
range includes: Pg/ml
range includes: Pg/nl
range includes: Pg/ul
range includes: Pl
range includes: PM
range includes: Pound
range includes: TCID50
range includes: Ug
range includes: Ug/dl
range includes: Ug/l
range includes: Ug/ml
range includes: Ug/ul
range includes: Uiu/ml
range includes: Ul
range includes: UM
range includes: Umol/l
range includes: Units/ml
display name: rnaBatchSizeUnit
required: sms:true

SampleBatchID
type: Class
comment: Sample batch lot identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sampleBatchID
required: sms:false

SampleIntroduction
type: Class
comment: The sample introduction and delivery. From GC, from LC, direct infusion without chromatography, direct infusion using dedicated autosampler flow rate. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sampleIntroduction
required: sms:true

SamplePrepProtocol
type: Class
comment: An internet address that may provide more details of the protocol information (web link). Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: samplePrepProtocol
required: sms:true

SampleType
type: Class
comment: The type of sample collected or the term used to describe the source of a biospecimen used for a laboratory test. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sampleType
required: sms:true

SeqMethod
type: Class
comment: Sequencing method. Sequencing method used; Example - 'Sanger, pyrosequencing, ABI-solid'. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: seqMethod
required: sms:true

SeqPlatform
type: Class
comment: Sequencing platform information. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: seqPlatform
required: sms:true

SequencingBatchID
type: Class
comment: Sequencing batch identifier, provided by the data contributor to Sage Bionetworks. The batch identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sequencingBatchID
required: sms:true

SequencingBatchSize
type: Class
comment: The number of samples. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sequencingBatchSize
required: sms:true

SequencingBatchSizeUnit
type: Class
comment: The unit of measurement for number of samples in a batch. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sequencingBatchSizeUnit
required: sms:true

Sop
type: Class
comment: Relevant standard operating procedures. Standard operating procedures used in the assembly and/or annotation of genomes, metagenomes, or environmental sequences. Example - 'http-//press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/)'Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sop
required: sms:true

SourceMatID
type: Class
comment: Source material identifiers. A unique identifier assigned to a material sample (as defined by http-//rs.tdwg.org/dwc/terms/materialSampleID and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing.The identifier can refer to the original material collected or any derived sub-samples. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: sourceMatID
required: sms:true

SpeciesAge
type: Class
comment: Age of individual (formatted in months, ex. "72 months").note- Uncertainty about the age might require recording age by specifying a lower and upper estimate in months for the age of the animal.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: speciesAge
required: sms:true

SpeciesGroup
type: Class
comment: The taxonomic ranking including both species and subspecies the individual belongs to.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Amphibian
range includes: Bird
range includes: Fish
range includes: Invertebrate
range includes: Mammal
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Reptile
range includes: unknown
display name: speciesGroup
required: sms:true

Amphibian
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Amphibian
required: sms:false

Bird
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Bird
required: sms:false

Fish
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Fish
required: sms:false

Invertebrate
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Invertebrate
required: sms:false

Mammal
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Mammal
required: sms:false

Reptile
type: Class
comment: TBD
subclass of: SpeciesGroup
is part of: schema.biothings.io
display name: Reptile
required: sms:false

SpeciesName
type: Class
comment: The scientific name of the species (typically a taxonomic group, ex. "Eremophila alpestris) the individual belongs to."""
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Acomyscahirinus
range includes: Acomysrussatus
range includes: Accipitercooperii
range includes: Actitismacularius
range includes: Aixsponsa
range includes: Anasacuta
range includes: Anascarolinensis
range includes: Anasplatyrhynchos
range includes: Antigonecanadensis
range includes: Archilochuscolubris
range includes: Artibeusjamaicensis
range includes: Baeolophusbicolor
range includes: Balaenamysticetus
range includes: Blarinabrevicauda
range includes: Bombycillacedrorum
range includes: Bonasaumbellus
range includes: Bostaurus
range includes: Brantacanadensis
range includes: Bubovirginianus
range includes: Buteojamaicensis
range includes: Buteolineatus
range includes: Canislatrans
range includes: Cardinaliscardinalis
range includes: Castorcanadensis
range includes: Caviaporcellus
range includes: Charadriusvociferus
range includes: Chinchillalanigera
range includes: Columbalivia
range includes: Condyluracristata
range includes: Corvusbrachyrhynchos
range includes: Cricetomysansorgei
range includes: Cricetulusbarabensis
range includes: Cricetulusgriseus
range includes: Cryptomysdamarensis
range includes: Cuniculuspaca
range includes: Cyanocittacristata
range includes: Cygnusolor
range includes: Dryobatespubescens
range includes: Dumetellacarolinensis
range includes: Ellobiuslutescens
range includes: Ellobiustalpinus
range includes: Eonycterisspelaea
range includes: Eptesicusfuscus
range includes: Equuscaballus
range includes: Eremophilaalpestris
range includes: Fukomysdamarensis
range includes: Haemorhousmexicanus
range includes: Heterocephalusglaber
range includes: Hirundorustica
range includes: Homosapiens
range includes: Hydrochoerushydrochaeris
range includes: Hydroprognecaspia
range includes: Hylocichlamustelina
range includes: Icteriavirens
range includes: Larusargentatus
range includes: Larusdelawarensis
range includes: Macacafascicularis
range includes: Macacamulatta
range includes: Marecastrepera
range includes: Marmotamonax
range includes: Melanerpescarolinus
range includes: Meleagrisgallopavo
range includes: Melospizamelodia
range includes: Merionesunguiculatus
range includes: Mesocricetusauratus
range includes: Microtuspennsylvanicus
range includes: Mimuspolyglottos
range includes: Molothrusater
range includes: Multi-species
range includes: Musmusculus
range includes: Myocastorcoypus
range includes: Myotislucifugus
range includes: Nannospalaxgalili
range includes: Neosciuruscarolinensis
range includes: Neotomacinerea

Acomyscahirinus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Acomys cahirinus
required: sms:false

Acomysrussatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Acomys russatus
required: sms:false

Accipitercooperii
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Accipiter cooperii
required: sms:false

Actitismacularius
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Actitis macularius
required: sms:false

Aixsponsa
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Aix sponsa
required: sms:false

Anasacuta
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Anas acuta
required: sms:false

Anascarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Anas carolinensis
required: sms:false

Anasplatyrhynchos
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Anas platyrhynchos
required: sms:false

Antigonecanadensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Antigone canadensis
required: sms:false

Archilochuscolubris
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Archilochus colubris
required: sms:false

Artibeusjamaicensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Artibeus jamaicensis
required: sms:false

Baeolophusbicolor
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Baeolophus bicolor
required: sms:false

Balaenamysticetus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Balaena mysticetus
required: sms:false

Blarinabrevicauda
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Blarina brevicauda
required: sms:false

Bombycillacedrorum
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Bombycilla cedrorum
required: sms:false

Bonasaumbellus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Bonasa umbellus
required: sms:false

Bostaurus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Bos taurus
required: sms:false

Brantacanadensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Branta canadensis
required: sms:false

Bubovirginianus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Bubo virginianus
required: sms:false

Buteojamaicensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Buteo jamaicensis
required: sms:false

Buteolineatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Buteo lineatus
required: sms:false

Canislatrans
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Canis latrans
required: sms:false

Cardinaliscardinalis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cardinalis cardinalis
required: sms:false

Castorcanadensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Castor canadensis
required: sms:false

Caviaporcellus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cavia porcellus
required: sms:false

Charadriusvociferus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Charadrius vociferus
required: sms:false

Chinchillalanigera
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Chinchilla lanigera
required: sms:false

Columbalivia
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Columba livia
required: sms:false

Condyluracristata
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Condylura cristata
required: sms:false

Corvusbrachyrhynchos
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Corvus brachyrhynchos
required: sms:false

Cricetomysansorgei
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cricetomys ansorgei
required: sms:false

Cricetulusbarabensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cricetulus barabensis
required: sms:false

Cricetulusgriseus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cricetulus griseus
required: sms:false

Cryptomysdamarensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cryptomys damarensis
required: sms:false

Cuniculuspaca
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cuniculus paca
required: sms:false

Cyanocittacristata
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cyanocitta cristata
required: sms:false

Cygnusolor
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Cygnus olor
required: sms:false

Dryobatespubescens
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Dryobates pubescens
required: sms:false

Dumetellacarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Dumetella carolinensis
required: sms:false

Ellobiuslutescens
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Ellobius lutescens
required: sms:false

Ellobiustalpinus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Ellobius talpinus
required: sms:false

Eonycterisspelaea
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Eonycteris spelaea
required: sms:false

Eptesicusfuscus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Eptesicus fuscus
required: sms:false

Equuscaballus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Equus caballus
required: sms:false

Eremophilaalpestris
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Eremophila alpestris
required: sms:false

Fukomysdamarensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Fukomys damarensis
required: sms:false

Haemorhousmexicanus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Haemorhous mexicanus
required: sms:false

Heterocephalusglaber
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Heterocephalus glaber
required: sms:false

Hirundorustica
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Hirundo rustica
required: sms:false

Homosapiens
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Homo sapiens
required: sms:false

Hydrochoerushydrochaeris
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Hydrochoerus hydrochaeris
required: sms:false

Hydroprognecaspia
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Hydroprogne caspia
required: sms:false

Hylocichlamustelina
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Hylocichla mustelina
required: sms:false

Icteriavirens
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Icteria virens
required: sms:false

Larusargentatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Larus argentatus
required: sms:false

Larusdelawarensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Larus delawarensis
required: sms:false

Macacafascicularis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Macaca fascicularis
required: sms:false

Macacamulatta
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Macaca mulatta
required: sms:false

Marecastrepera
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Mareca strepera
required: sms:false

Marmotamonax
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Marmota monax
required: sms:false

Melanerpescarolinus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Melanerpes carolinus
required: sms:false

Meleagrisgallopavo
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Meleagris gallopavo
required: sms:false

Melospizamelodia
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Melospiza melodia
required: sms:false

Merionesunguiculatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Meriones unguiculatus
required: sms:false

Mesocricetusauratus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Mesocricetus auratus
required: sms:false

Microtuspennsylvanicus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Microtus pennsylvanicus
required: sms:false

Mimuspolyglottos
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Mimus polyglottos
required: sms:false

Molothrusater
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Molothrus ater
required: sms:false

Multi-species
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Multi-species
required: sms:false

Musmusculus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Mus musculus
required: sms:false

Myocastorcoypus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Myocastor coypus
required: sms:false

Myotislucifugus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Myotis lucifugus
required: sms:false

Nannospalaxgalili
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Nannospalax galili
required: sms:false

Neosciuruscarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Neosciurus carolinensis
required: sms:false

Neotomacinerea
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Neotoma cinerea
required: sms:false

Neotomafloridana
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Neotoma floridana
required: sms:false

Notprovided
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Not provided
required: sms:false

Octodondegus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Octodon degus
required: sms:false

Odocoileusvirginianus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Odocoileus virginianus
required: sms:false

Ondatrazibethicus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Ondatra zibethicus
required: sms:false

Pantroglodytes
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Pan troglodytes
required: sms:false

Papioanubis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Papio anubis
required: sms:false

Passerdomesticus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Passer domesticus
required: sms:false

Passerinacaerulea
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Passerina caerulea
required: sms:false

Passerinacyanea
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Passerina cyanea
required: sms:false

Peromyscusgossypinus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Peromyscus gossypinus
required: sms:false

Peromyscusleucopus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Peromyscus leucopus
required: sms:false

Peromyscusmaniculatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Peromyscus maniculatus
required: sms:false

Phalacrocoraxauritus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Phalacrocorax auritus
required: sms:false

Phasianuscolchicus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Phasianus colchicus
required: sms:false

Picoidesvillosus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Picoides villosus
required: sms:false

Pipiloerythrophthalmus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Pipilo erythrophthalmus
required: sms:false

Poecilecarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Poecile carolinensis
required: sms:false

Quiscalusquiscula
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Quiscalus quiscula
required: sms:false

Rattusnorvegicus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Rattus norvegicus
required: sms:false

Rattusrattus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Rattus rattus
required: sms:false

Reguluscalendula
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Regulus calendula
required: sms:false

Saimiriboliviensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Saimiri boliviensis
required: sms:false

Sayornisphoebe
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sayornis phoebe
required: sms:false

Scalopusaquaticus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Scalopus aquaticus
required: sms:false

Sciuruscarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sciurus carolinensis
required: sms:false

Sciurusniger
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sciurus niger
required: sms:false

Sciurusvulgaris
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sciurus vulgaris
required: sms:false

Scolopaxminor
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Scolopax minor
required: sms:false

Setophagacitrina
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Setophaga citrina
required: sms:false

Setophagacoronata
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Setophaga coronata
required: sms:false

Setophagadominica
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Setophaga dominica
required: sms:false

Setophagapetechia
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Setophaga petechia
required: sms:false

Setophagapinus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Setophaga pinus
required: sms:false

Sialiasialis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sialia sialis
required: sms:false

Sigmodonhispidus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sigmodon hispidus
required: sms:false

Sittacarolinensis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sitta carolinensis
required: sms:false

Spatulaclypeata
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Spatula clypeata
required: sms:false

Spinustristis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Spinus tristis
required: sms:false

Spizellapasserina
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Spizella passerina
required: sms:false

Spizellapusilla
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Spizella pusilla
required: sms:false

Spizelloidesarborea
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Spizelloides arborea
required: sms:false

Struthiocamelus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Struthio camelus
required: sms:false

Sturnusvulgaris
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sturnus vulgaris
required: sms:false

Susscrofa
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sus scrofa
required: sms:false

Sylvilagusfloridanus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Sylvilagus floridanus
required: sms:false

Tachycinetabicolor
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Tachycineta bicolor
required: sms:false

Tamiasstriatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Tamias striatus
required: sms:false

Tamiasciurushudsonicus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Tamiasciurus hudsonicus
required: sms:false

Thryothorusludovicianus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Thryothorus ludovicianus
required: sms:false

Toxostomarufum
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Toxostoma rufum
required: sms:false

Troglodytesaedon
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Troglodytes aedon
required: sms:false

Turdusmigratorius
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Turdus migratorius
required: sms:false

Tursiopstruncatus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Tursiops truncatus
required: sms:false

Vicugnapacos
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Vicugna pacos
required: sms:false

Vireogriseus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Vireo griseus
required: sms:false

Vireoolivaceus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Vireo olivaceus
required: sms:false

Zalophuscalifornianus
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Zalophus californianus
required: sms:false

Zenaidamacroura
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Zenaida macroura
required: sms:false

Zonotrichiaalbicollis
type: Class
comment: TBD
subclass of: SpeciesName
is part of: schema.biothings.io
display name: Zonotrichia albicollis
required: sms:false

SpecimenAge
type: Class
comment: The subject's age at the time of specimen extraction is the individual's age (since birth) at the time a given specimen was extracted. Measured as age in years. Other, Unknown, Not collected, Not applicable
subclass of: manifestColumn
is part of: schema.biothings.io
display name: specimenAge
required: sms:true

SpecimenSource
type: Class
comment: Indicate the biological area of the specimen
subclass of: manifestColumn
is part of: schema.biothings.io
display name: specimenSource
required: sms:true

SpecimenType
type: Class
comment: Type of biological material comprising the Specimen
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Blood
range includes: CerebrospinalFluid(CSF)
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Organoid
range includes: Plasma
range includes: Saliva
range includes: Serum
range includes: Sputum
range includes: Stool
range includes: Swabs
range includes: Tissue
range includes: unknown
range includes: Urine
display name: specimenType
required: sms:true

Blood
type: Class
comment: TBD
subclass of: SpecimenType
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: blood
required: sms:false

CerebrospinalFluid(CSF)
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: Cerebrospinal Fluid (CSF)
required: sms:false

Plasma
type: Class
comment: TBD
subclass of: SpecimenType
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: plasma
required: sms:false

Saliva
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: saliva
required: sms:false

Serum
type: Class
comment: TBD
subclass of: SpecimenType
subclass of: Tissue
is part of: schema.biothings.io
display name: serum
required: sms:false

Sputum
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: sputum
required: sms:false

Stool
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: stool
required: sms:false

Swabs
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: swabs
required: sms:false

Tissue
type: Class
comment: Indicate the tissue the specimen is from
subclass of: manifestColumn
subclass of: SpecimenType
is part of: schema.biothings.io
range includes: Amygdala
range includes: Amygdaloidcomplex
range includes: Anteriorcingulatecortex
range includes: Angulargyrus
range includes: Blood
range includes: Bonemarrow
range includes: BuccalMucosa
range includes: BuffyCoat
range includes: Caudatenucleus
range includes: Cecumderivedfecalmaterial
range includes: Cerebellarcortex
range includes: Cerebellum
range includes: Cerebralcortex
range includes: Corticalplate
range includes: Dorsalanteriorcingulatecortex
range includes: Dorsalpallium
range includes: DorsalRootGanglion
range includes: Dorsolateralprefrontalcortex
range includes: Dorsomedialprefrontalcortex
range includes: Embryonictissue
range includes: Entorhinalcortex
range includes: Fecalmaterial
range includes: Forebrain
range includes: Frontalcortex
range includes: Frontallobe
range includes: Frontalpole
range includes: Fusiformgyrus
range includes: Hippocampus
range includes: Headofcaudatenucleus
range includes: Inferiorfrontalgyrus
range includes: Inferiortemporalcortex
range includes: Inferiortemporalgyrus
range includes: Inferolateraltemporalcortex
range includes: Insula
range includes: Insularcortex
range includes: Lateralentorhinalcortex
range includes: Leftcerebralhemisphere
range includes: Liver
range includes: Mammillarybody
range includes: Medialdorsalnucleusofthalamus
range includes: Medialentorhinalcortex
range includes: Medialfrontalcortex
range includes: Medialganglioniceminence
range includes: Medialorbitalfrontalcortex
range includes: Medialprefrontalcortex
range includes: Meninges
range includes: Midbrain
range includes: Middlefrontalgyrus
range includes: Middletemporalgyrus
range includes: Nervetissue
range includes: NotApplicable
range includes: Nucleusaccumbens
range includes: Occipitallobe
range includes: Occipitalvisualcortex
range includes: Olfactoryneuroepithelium
range includes: Orbitofrontalcortex
range includes: Parahippocampalgyrus
range includes: Parietalcortex
range includes: Parietallobe
range includes: Plasma
range includes: Posteriorcingulatecortex
range includes: Posteroinferiorparietalcortex
range includes: Posteriorinferiorparietalcortex
range includes: Posteriorsuperiortemporalcortex
range includes: Precentralgyrus
range includes: Prefrontalcortex
range includes: Primaryauditorycortex
range includes: Primarymotorcortex
range includes: Primarysomatosensorycortex
range includes: Primarytumor
range includes: Primaryvisualcortex
range includes: Putamen
range includes: Rightcerebralhemisphere
range includes: Serum

Urine
type: Class
comment: TBD
subclass of: SpecimenType
is part of: schema.biothings.io
display name: urine
required: sms:false

Stage
type: Class
comment: Stage of the experimental design.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Discovery
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: Replication
range includes: unknown
display name: stage
required: sms:true

Discovery
type: Class
comment: TBD
subclass of: Stage
is part of: schema.biothings.io
display name: Discovery
required: sms:false

Replication
type: Class
comment: TBD
subclass of: Stage
is part of: schema.biothings.io
display name: Replication
required: sms:false

StatisticalModel
type: Class
comment: A brief description of the statistical model used to determine association significance. It is important to distinguish studies that would otherwise appear identical (e.g., the same trait analyzed using additive, dominant, and recessive models). Example - additive model
subclass of: manifestColumn
is part of: schema.biothings.io
display name: statisticalModel
required: sms:false

StudyCode
type: Class
comment: Unique identifier for the study, assigned by the DCC
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: CDCP
range includes: ILO
range includes: LC
range includes: LG
range includes: LLFS
range includes: Other
display name: studyCode
required: sms:true

CDCP
type: Class
comment: TBD
subclass of: StudyCode
is part of: schema.biothings.io
display name: CDCP
required: sms:false

StudyKey
type: Class
comment: The short acronym for a study name in a URL-friendly format (ex. LLFS_Metabolomics OR ELPSCRNA)
subclass of: manifestColumn
is part of: schema.biothings.io
display name: studyKey
required: sms:true

SummaryFile
type: Class
comment: The name of any summary statistics file uploaded to Synapse. Example - example.tsv
subclass of: manifestColumn
is part of: schema.biothings.io
display name: summaryFile
required: sms:false

SummaryStatisticsAssembly
type: Class
comment: Genome assembly for the summary statistics. Example - GRCh38
subclass of: manifestColumn
is part of: schema.biothings.io
display name: summaryStatisticsAssembly
required: sms:false

TargetGene
type: Class
comment: Targeted gene or locus name for marker gene studies. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: targetGene
required: sms:true

Taxon
type: Class
comment: Taxonomic identifier. The National Center for Biotechnology Information taxon ID (formatted as, ex. "txid9989")
subclass of: manifestColumn
is part of: schema.biothings.io
display name: taxon
required: sms:true

TechnologyPlatformVersion
type: Class
comment: The specific version (application, manufacturer, model, lab, etc.) of a technology that is used to carry out a laboratory or computational experiment. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: technologyPlatformVersion
required: sms:true

TissueVolume
type: Class
comment: The volume of the tissue sample. Measured in microliters.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: tissueVolume
required: sms:true

TranscriptType
type: Class
comment: The type of transcript reported
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: LincRNA
range includes: MRNA
range includes: TotalRNAminusrRNA
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: SnRNA
range includes: unknown
display name: transcriptType
required: sms:true

LincRNA
type: Class
comment: TBD
subclass of: TranscriptType
is part of: schema.biothings.io
display name: lincRNA
required: sms:false

MRNA
type: Class
comment: TBD
subclass of: TranscriptType
is part of: schema.biothings.io
display name: mRNA
required: sms:false

TotalRNAminusrRNA
type: Class
comment: TBD
subclass of: TranscriptType
is part of: schema.biothings.io
display name: total RNA minus rRNA
required: sms:false

SnRNA
type: Class
comment: TBD
subclass of: TranscriptType
is part of: schema.biothings.io
display name: snRNA
required: sms:false

TreatmentAmountUnit
type: Class
comment: Unit of treatment amount.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AFU
range includes: AI
range includes: AU/ml
range includes: DKunits/ml
range includes: G/dl
range includes: G/l
range includes: Gm
range includes: HAU
range includes: IU
range includes: Iu/l
range includes: IU/ml
range includes: KallikreinInactivatorUnitperMilliliter
range includes: Kg
range includes: L
range includes: M
range includes: Mg
range includes: Mg/dl
range includes: Mg/l
range includes: Mg/ml
range includes: Miu/ml
range includes: Ml
range includes: MM
range includes: MOI
range includes: Ng
range includes: Ng/dl
range includes: Ng/ml
range includes: Ng/nl
range includes: Ng/ul
range includes: Nl
range includes: NM
range includes: Notspecified
range includes: NPX
range includes: Opticaldensity
range includes: Other
range includes: PFU
range includes: PFUe
range includes: Pg
range includes: Pg/mgcreatinine
range includes: Pg/ml
range includes: Pg/nl
range includes: Pg/ul
range includes: Pl
range includes: PM
range includes: Pound
range includes: TCID50
range includes: Ug
range includes: Ug/dl
range includes: Ug/l
range includes: Ug/ml
range includes: Ug/ul
range includes: Uiu/ml
range includes: Ul
range includes: UM
range includes: Umol/l
range includes: Units/ml
display name: treatmentAmountUnit
required: sms:false

G/dl
type: Class
comment: TBD
subclass of: TreatmentAmountUnit
is part of: schema.biothings.io
display name: g/dl
required: sms:false

TreatmentAmountValue
type: Class
comment: The Amount Value indicates how much (concentration, mass, volume) of a treatment agent was applied to a sample.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: treatmentAmountValue
required: sms:false

TreatmentDurationUnit
type: Class
comment: Unit of treatment duration.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: D.p.c.
range includes: Days
range includes: Hours
range includes: Minutes
range includes: Months
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Seconds
range includes: unknown
range includes: Weeks
range includes: Years
display name: treatmentDurationUnit
required: sms:false

D.p.c.
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: d.p.c.
required: sms:false

Days
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Days
required: sms:false

Hours
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Hours
required: sms:false

Minutes
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Minutes
required: sms:false

Months
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Months
required: sms:false

Seconds
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Seconds
required: sms:false

Weeks
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Weeks
required: sms:false

Years
type: Class
comment: TBD
subclass of: TreatmentDurationUnit
is part of: schema.biothings.io
display name: Years
required: sms:false

TreatmentDurationValue
type: Class
comment: Duration of treatment.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: treatmentDurationValue
required: sms:false

TreatmentIDs
type: Class
comment: One or more identifiers, separated by a semicolon (;). The treatment identifier(s) must be stored in a data dictionary .csv file uploaded to Synapse.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: treatmentIDs
required: sms:false

TreatmentName
type: Class
comment: Treatments refer to in vitro modifications of samples. Three treatment types are supported- agent amount, duration, and temperature. The treatment name is an alternate identifier to the Treatment ID.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: treatmentName
required: sms:false

TreatmentTemperatureUnit
type: Class
comment: Unit of treatment temperature.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: C
range includes: F
range includes: K
range includes: Notspecified
display name: treatmentTemperatureUnit
required: sms:false

TreatmentTemperatureValue
type: Class
comment: Value of treatment temperature.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: treatmentTemperatureValue
required: sms:false

UseReadMeFile
type: Class
comment: Was a readme file uploaded to Synapse?
subclass of: manifestColumn
is part of: schema.biothings.io
display name: useReadMeFile
required: sms:true

UseReagent
type: Class
comment: Was a reagent applied to the sample?
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FALSE
range includes: TRUE
display name: useReagent
required: sms:true

UseSummaryFile
type: Class
comment: Was a summary statitics file uploded to Synapse?
subclass of: manifestColumn
is part of: schema.biothings.io
display name: useSummaryFile
required: sms:true

UseTreatment
type: Class
comment: Was a treatment applied to the sample?
subclass of: manifestColumn
is part of: schema.biothings.io
display name: useTreatment
required: sms:true

VacuumPressure
type: Class
comment: The recorded vacuum pressure value
subclass of: manifestColumn
is part of: schema.biothings.io
display name: vacuumPressure
required: sms:false

VacuumPressureUnit
type: Class
comment: Unit of vacuum pressure value
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AFU
range includes: AI
range includes: AU/ml
range includes: Bpg/dl
range includes: DKunits/ml
range includes: G/l
range includes: Gm
range includes: HAU
range includes: IU
range includes: Iu/l
range includes: IU/ml
range includes: KallikreinInactivatorUnitperMilliliter
range includes: Kg
range includes: L
range includes: M
range includes: Mg
range includes: Mg/dl
range includes: Mg/l
range includes: Mg/ml
range includes: Miu/ml
range includes: Ml
range includes: MM
range includes: MOI
range includes: Ng
range includes: Ng/dl
range includes: Ng/ml
range includes: Ng/nl
range includes: Ng/ul
range includes: Nl
range includes: NM
range includes: Notspecified
range includes: NPX
range includes: Opticaldensity
range includes: PFU
range includes: PFUe
range includes: Pg
range includes: Pg/mgcreatinine
range includes: Pg/ml
range includes: Pg/nl
range includes: Pg/ul
range includes: Pl
range includes: PM
range includes: Pound
range includes: TCID50
range includes: Ug
range includes: Ug/dl
range includes: Ug/l
range includes: Ug/ml
range includes: Ug/ul
range includes: Uiu/ml
range includes: Ul
range includes: UM
range includes: Umol/l
range includes: Units/ml
display name: vacuumPressureUnit
required: sms:false

ValueReported
type: Class
comment: The count or gene count for the transcript
subclass of: manifestColumn
is part of: schema.biothings.io
display name: valueReported
required: sms:true

VariantCount
type: Class
comment: The number of variants analysed in the discovery stage (after QC). Example - 52500
subclass of: manifestColumn
is part of: schema.biothings.io
display name: variantCount
required: sms:true

VisitCode
type: Class
comment: Indicate which longitudinal visit for the individual the data comes from, provided by the data contributor's data dictionary
subclass of: manifestColumn
is part of: schema.biothings.io
display name: visitCode
required: sms:true

Filename
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: Filename
required: sms:false

AccessReqs
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: accessReqs
required: sms:false

AckContext
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: ackContext
required: sms:false

Acknowledgment
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: acknowledgment
required: sms:false

AcquistionSoftwareVersion
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: acquistionSoftwareVersion
required: sms:false

BatchSizeUnit
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: batchSizeUnit
required: sms:false

Contributor
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: contributor
required: sms:true

DisplayName
type: Class
comment: Canonical tool name provided by the tool developer or service provider
subclass of: Thing
is part of: schema.biothings.io
display name: displayName
required: sms:true

Documentation
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: documentation
required: sms:true

ExperimentalBatchSize
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: experimentalBatchSize
required: sms:false

GrantNumber
type: Class
comment: Grant number including activity code institute code and serial number (e.g. U01MH103392)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: U19AG063893
range includes: U24AG051129
range includes: U19AG023122
range includes: UH2AG064706
range includes: UH3AG064706
range includes: UH2AG064704
range includes: UH3AG064704
range includes: R01AG061844
range includes: Notassigned
display name: grantNumber
required: sms:true

U19AG063893
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: U19AG063893
required: sms:false

U24AG051129
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: U24AG051129
required: sms:false

U19AG023122
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: U19AG023122
required: sms:false

UH2AG064706
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: UH2AG064706
required: sms:false

UH3AG064706
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: UH3AG064706
required: sms:false

UH2AG064704
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: UH2AG064704
required: sms:false

UH3AG064704
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: UH3AG064704
required: sms:false

R01AG061844
type: Class
comment: TBD
subclass of: GrantNumber
is part of: schema.biothings.io
display name: R01AG061844
required: sms:false

Grants
type: Class
comment: Grant number associated with the tool's development. Multiple values permitted, comma separated.
subclass of: Thing
is part of: schema.biothings.io
display name: grants
required: sms:true

Institution
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: institution
required: sms:false

IsFeatured
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: isFeatured
required: sms:false

IsReleased
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: isReleased
required: sms:false

MetadataType
type: Class
comment: For files of dataSubtype: metadata, a description of the type of metadata in the file
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Individual
range includes: Biospecimen
range includes: Assay
range includes: Supplementaryfiles
range includes: NotAssigned
display name: metadataType
required: sms:false

Individual
type: Class
comment: TBD
subclass of: MetadataType
is part of: schema.biothings.io
display name: individual
required: sms:false

Biospecimen
type: Class
comment: TBD
subclass of: MetadataType
is part of: schema.biothings.io
display name: biospecimen
required: sms:false

Supplementaryfiles
type: Class
comment: TBD
subclass of: MetadataType
is part of: schema.biothings.io
display name: supplementary files
required: sms:false

NotAssigned
type: Class
comment: TBD
subclass of: FamilyStudyParticipant
subclass of: MetadataType
is part of: schema.biothings.io
display name: Not Assigned
required: sms:false

Methods
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: methods
required: sms:false

NewsRelease
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: newsRelease
required: sms:false

ProcessingBatchSize
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: processingBatchSize
required: sms:false

ProcessingBatchSizeUnit
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: processingBatchSizeUnit
required: sms:false

Project
type: Class
comment: The ELITE project short name associated with the tool
subclass of: Thing
is part of: schema.biothings.io
display name: project
required: sms:true

ProjectFullName
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: projectFullName
required: sms:false

RelatedStudies
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: relatedStudies
required: sms:false

SampleBatchSize
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: sampleBatchSize
required: sms:false

SampleBatchSizeUnit
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: sampleBatchSizeUnit
required: sms:false

StudyAbstract
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyAbstract
required: sms:false

StudyDescription
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyDescription
required: sms:false

StudyFocus
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyFocus
required: sms:false

StudyMetadata
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyMetadata
required: sms:false

StudyName
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyName
required: sms:false

StudyType
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyType
required: sms:false

StudyWiki
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: studyWiki
required: sms:false

Summary
type: Class
comment: Textual description of the tool
subclass of: Thing
is part of: schema.biothings.io
display name: summary
required: sms:true

BatchSize
type: Class
comment: The number of samples
subclass of: manifestColumn
is part of: schema.biothings.io
display name: batchSize
required: sms:false

CellType
type: Class
comment: Indicate the cell type.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: A549
range includes: Arachnoid
range includes: Astrocytes
range includes: B-lymphocytes
range includes: CD138+
range includes: CD8+T-Cells
range includes: CNON
range includes: Dopaminergicneurons
range includes: Embryonicstemcells
range includes: Epithelial
range includes: Epithelial-like
range includes: Fibroblast
range includes: GABAergicneurons
range includes: Glia
range includes: GLUtamatergicneurons
range includes: Immunecell
range includes: IPSC
range includes: IPSC-derivedastrocytes
range includes: IPSC-derivedglia
range includes: IPSC-derivedneuron
range includes: IPSC-derivedneuronalprogenitorcell
range includes: IPSC-derivedtelencephalicorganoids
range includes: Lymphoblast
range includes: Lymphoblastoidcellline
range includes: Macrophages
range includes: Meningioma
range includes: Microglia
range includes: Monocytes
range includes: Monocyte-derivedmicroglia
range includes: NCXNES
range includes: NeuN-
range includes: NeuN+
range includes: Neuralprogenitorcell
range includes: Neuron
range includes: Oligodendrocyte
range includes: Peripheralbloodmononuclearcell
range includes: Polygonal
range includes: Round
range includes: Schwann
range includes: Schwanncellprecusor
range includes: Schwannoma
range includes: SH-SY5Y
range includes: Notcollected
range includes: Notspecified
range includes: Notapplicable
range includes: Other
range includes: unknown
display name: cellType
required: sms:true

A549
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: A549
required: sms:false

Arachnoid
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: arachnoid
required: sms:false

Astrocytes
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: astrocytes
required: sms:false

B-lymphocytes
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: B-lymphocytes
required: sms:false

CD138+
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: CD138+
required: sms:false

CD8+T-Cells
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: CD8+ T-Cells
required: sms:false

CNON
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: CNON
required: sms:false

Dopaminergicneurons
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: dopaminergic neurons
required: sms:false

Embryonicstemcells
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: Embryonic stem cells
required: sms:false

Epithelial
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: epithelial
required: sms:false

Epithelial-like
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: epithelial-like
required: sms:false

Fibroblast
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: fibroblast
required: sms:false

GABAergicneurons
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: GABAergic neurons
required: sms:false

Glia
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: glia
required: sms:false

GLUtamatergicneurons
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: GLUtamatergic neurons
required: sms:false

Immunecell
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: immune cell
required: sms:false

IPSC-derivedastrocytes
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC-derived astrocytes
required: sms:false

IPSC-derivedglia
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC-derived glia
required: sms:false

IPSC-derivedneuron
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC-derived neuron
required: sms:false

IPSC-derivedneuronalprogenitorcell
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC-derived neuronal progenitor cell
required: sms:false

IPSC-derivedtelencephalicorganoids
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: iPSC-derived telencephalic organoids
required: sms:false

Lymphoblast
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: lymphoblast
required: sms:false

Lymphoblastoidcellline
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: lymphoblastoid cell line
required: sms:false

Macrophages
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: macrophages
required: sms:false

Meningioma
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: meningioma
required: sms:false

Microglia
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: microglia
required: sms:false

Monocytes
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: monocytes
required: sms:false

Monocyte-derivedmicroglia
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: monocyte-derived microglia
required: sms:false

NCXNES
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: NCX NES
required: sms:false

NeuN-
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: NeuN-
required: sms:false

NeuN+
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: NeuN+
required: sms:false

Neuralprogenitorcell
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: neural progenitor cell
required: sms:false

Neuron
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: neuron
required: sms:false

Oligodendrocyte
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: oligodendrocyte
required: sms:false

Peripheralbloodmononuclearcell
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: peripheral blood mononuclear cell
required: sms:false

Polygonal
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: polygonal
required: sms:false

Round
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: round
required: sms:false

Schwann
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: schwann
required: sms:false

Schwanncellprecusor
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: Schwann cell precusor
required: sms:false

Schwannoma
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: schwannoma
required: sms:false

SH-SY5Y
type: Class
comment: TBD
subclass of: CellType
is part of: schema.biothings.io
display name: SH-SY5Y
required: sms:false

FastingState
type: Class
comment: Was individual fasting when the sample was taken (true/false)?
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FALSE
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: TRUE
range includes: unknown
display name: fastingState
required: sms:true

IsPostMortem
type: Class
comment: Was the sample taken after death (true/false)?
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: TRUE
range includes: FALSE
display name: isPostMortem
required: sms:true

NucleicAcidSource
type: Class
comment: Specifies the type of nucleic acid (DNA, RNA, Pooled, etc.) found in a sample.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Bulkcell
range includes: Bulknuclei
range includes: Mitochondria
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Singlecell
range includes: Singlenucleus
range includes: Sortedcells
range includes: Sortednuclei
range includes: unknown
display name: nucleicAcidSource
required: sms:true

Bulkcell
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: bulk cell
required: sms:false

Bulknuclei
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: bulk nuclei
required: sms:false

Mitochondria
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: mitochondria
required: sms:false

Singlecell
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: single cell
required: sms:false

Singlenucleus
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: single nucleus
required: sms:false

Sortedcells
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: sorted cells
required: sms:false

Sortednuclei
type: Class
comment: TBD
subclass of: NucleicAcidSource
is part of: schema.biothings.io
display name: sorted nuclei
required: sms:false

Organ
type: Class
comment: Indicate the organ the specimen is from
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Blood
range includes: Bonemarrow
range includes: Brain
range includes: Breast
range includes: BursaOfFabricius
range includes: Cerebrospinalfluid
range includes: Colon
range includes: Kidney
range includes: Largeintestine
range includes: Liver
range includes: Lung
range includes: Lymphnode
range includes: Mammarygland
range includes: Nerves
range includes: Nose
range includes: Ovary
range includes: Pancreas
range includes: Prostate
range includes: Skin
range includes: Spleen
range includes: Notcollected
range includes: Notspecified
range includes: Notapplicable
range includes: Other
range includes: unknown
range includes: Plasma
range includes: Gonadalfat
range includes: Inguinalfat
range includes: Gastrocnemiusmuscle
display name: organ
required: sms:true

Bonemarrow
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: bone marrow
required: sms:false

Brain
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: brain
required: sms:false

Breast
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: breast
required: sms:false

BursaOfFabricius
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: Bursa Of Fabricius
required: sms:false

Cerebrospinalfluid
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: cerebrospinal fluid
required: sms:false

Colon
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: colon
required: sms:false

Kidney
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: kidney
required: sms:false

Largeintestine
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: large intestine
required: sms:false

Liver
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: liver
required: sms:false

Lung
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: lung
required: sms:false

Lymphnode
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: lymph node
required: sms:false

Mammarygland
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: mammary gland
required: sms:false

Nerves
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: nerves
required: sms:false

Nose
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: nose
required: sms:false

Ovary
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: ovary
required: sms:false

Pancreas
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: pancreas
required: sms:false

Prostate
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: prostate
required: sms:false

Skin
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: skin
required: sms:false

Spleen
type: Class
comment: TBD
subclass of: Organ
is part of: schema.biothings.io
display name: spleen
required: sms:false

Gonadalfat
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: gonadal fat
required: sms:false

Inguinalfat
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: inguinal fat
required: sms:false

Gastrocnemiusmuscle
type: Class
comment: TBD
subclass of: Organ
subclass of: Tissue
is part of: schema.biothings.io
display name: gastrocnemius muscle
required: sms:false

SamplingAge
type: Class
comment: The calculated age of the sample, measurement is determined or coded by the data contributor.Other,Unknown, Not collected, Not applicable
subclass of: manifestColumn
is part of: schema.biothings.io
display name: samplingAge
required: sms:true

SpecimenID
type: Class
comment: Identifying string linked to a particular sample or specimen, provide by the data contributor
subclass of: manifestColumn
is part of: schema.biothings.io
display name: specimenID
required: sms:true

Amygdala
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: amygdala
required: sms:false

Amygdaloidcomplex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: amygdaloid complex
required: sms:false

Anteriorcingulatecortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: anterior cingulate cortex
required: sms:false

Angulargyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: angular gyrus
required: sms:false

BuccalMucosa
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: Buccal Mucosa
required: sms:false

BuffyCoat
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: Buffy Coat
required: sms:false

Caudatenucleus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: caudate nucleus
required: sms:false

Cecumderivedfecalmaterial
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: cecum derived fecal material
required: sms:false

Cerebellarcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: cerebellar cortex
required: sms:false

Cerebellum
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: cerebellum
required: sms:false

Cerebralcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: cerebral cortex
required: sms:false

Corticalplate
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: cortical plate
required: sms:false

Dorsalanteriorcingulatecortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: dorsal anterior cingulate cortex
required: sms:false

Dorsalpallium
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: dorsal pallium
required: sms:false

DorsalRootGanglion
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: Dorsal Root Ganglion
required: sms:false

Dorsolateralprefrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: dorsolateral prefrontal cortex
required: sms:false

Dorsomedialprefrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: dorsomedial prefrontal cortex
required: sms:false

Embryonictissue
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: embryonic tissue
required: sms:false

Entorhinalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: entorhinal cortex
required: sms:false

Fecalmaterial
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: fecal material
required: sms:false

Forebrain
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: forebrain
required: sms:false

Frontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: frontal cortex
required: sms:false

Frontallobe
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: frontal lobe
required: sms:false

Frontalpole
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: frontal pole
required: sms:false

Fusiformgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: fusiform gyrus
required: sms:false

Hippocampus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: hippocampus
required: sms:false

Headofcaudatenucleus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: head of caudate nucleus
required: sms:false

Inferiorfrontalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: inferior frontal gyrus
required: sms:false

Inferiortemporalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: inferior temporal cortex
required: sms:false

Inferiortemporalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: inferior temporal gyrus
required: sms:false

Inferolateraltemporalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: inferolateral temporal cortex
required: sms:false

Insula
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: insula
required: sms:false

Insularcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: insular cortex
required: sms:false

Lateralentorhinalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: lateral entorhinal cortex
required: sms:false

Leftcerebralhemisphere
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: left cerebral hemisphere
required: sms:false

Mammillarybody
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: mammillary body
required: sms:false

Medialdorsalnucleusofthalamus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial dorsal nucleus of thalamus
required: sms:false

Medialentorhinalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial entorhinal cortex
required: sms:false

Medialfrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial frontal cortex
required: sms:false

Medialganglioniceminence
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial ganglionic eminence
required: sms:false

Medialorbitalfrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial orbital frontal cortex
required: sms:false

Medialprefrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: medial prefrontal cortex
required: sms:false

Meninges
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: meninges
required: sms:false

Midbrain
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: midbrain
required: sms:false

Middlefrontalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: middle frontal gyrus
required: sms:false

Middletemporalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: middle temporal gyrus
required: sms:false

Nervetissue
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: nerve tissue
required: sms:false

NotApplicable
type: Class
comment: TBD
subclass of: Diagnosis
subclass of: Tissue
is part of: schema.biothings.io
display name: Not Applicable
required: sms:false

Nucleusaccumbens
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: nucleus accumbens
required: sms:false

Occipitallobe
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: occipital lobe
required: sms:false

Occipitalvisualcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: occipital visual cortex
required: sms:false

Olfactoryneuroepithelium
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: olfactory neuroepithelium
required: sms:false

Orbitofrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: orbitofrontal cortex
required: sms:false

Parahippocampalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: parahippocampal gyrus
required: sms:false

Parietalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: parietal cortex
required: sms:false

Parietallobe
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: parietal lobe
required: sms:false

Posteriorcingulatecortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: posterior cingulate cortex
required: sms:false

Posteroinferiorparietalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: posteroinferior parietal cortex
required: sms:false

Posteriorinferiorparietalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: posterior inferior parietal cortex
required: sms:false

Posteriorsuperiortemporalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: posterior superior temporal cortex
required: sms:false

Precentralgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: precentral gyrus
required: sms:false

Prefrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: prefrontal cortex
required: sms:false

Primaryauditorycortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: primary auditory cortex
required: sms:false

Primarymotorcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: primary motor cortex
required: sms:false

Primarysomatosensorycortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: primary somatosensory cortex
required: sms:false

Primarytumor
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: primary tumor
required: sms:false

Primaryvisualcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: primary visual cortex
required: sms:false

Putamen
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: putamen
required: sms:false

Rightcerebralhemisphere
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: right cerebral hemisphere
required: sms:false

Splenocyte
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: splenocyte
required: sms:false

Striatum
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: striatum
required: sms:false

Subgenualanteriorcingulatecortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: subgenual anterior cingulate cortex
required: sms:false

Subgenualcingulatecortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: subgenual cingulate cortex
required: sms:false

Superiorparietallobe
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: superior parietal lobe
required: sms:false

Superiortemporalgyrus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: superior temporal gyrus
required: sms:false

Temporalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: temporal cortex
required: sms:false

Temporallobe
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: temporal lobe
required: sms:false

Temporalpole
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: temporal pole
required: sms:false

Thalamus
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: thalamus
required: sms:false

Unspecified
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: unspecified
required: sms:false

Ventricularzone
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: ventricular zone
required: sms:false

Ventrolateralprefrontalcortex
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: ventrolateral prefrontal cortex
required: sms:false

VZ/SVZ
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: VZ/SVZ
required: sms:false

Wholebrain
type: Class
comment: TBD
subclass of: Tissue
is part of: schema.biothings.io
display name: whole brain
required: sms:false

TissueWeight
type: Class
comment: The mass of the tissue specimen. Measured in mg.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: tissueWeight
required: sms:true

Diagnosis
type: Class
comment: Indicate the disease or condition.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AD-DS
range includes: AffectiveDisorder
range includes: AlzheimerDisease
range includes: Alzheimerdiseasewithpsychosis
range includes: Amyotrophiclateralsclerosis
range includes: Anxiety
range includes: AutismSpectrumDisorder
range includes: BipolarDisorder
range includes: BladderCancer
range includes: BrainCancer
range includes: BreastCancer
range includes: CervicalCancer
range includes: ColonCancer
range includes: Control
range includes: Corticobasaldegenerationdisorder
range includes: CS-DS
range includes: Dementia
range includes: Dystonia
range includes: Essentialtremor
range includes: FibrocysticBreastDisease
range includes: Frontotemporaldementia
range includes: Gliosis
range includes: Hypoxia
range includes: JuvenileMyelomonocyticLeukemia
range includes: Leukemia
range includes: Lewybodydisease
range includes: Longevity
range includes: LungCancer
range includes: MajorDepressiveDisorder
range includes: MCI-DS
range includes: Mildcognitiveimpairment
range includes: Multiplesystematrophy
range includes: Neurofibromatosis1
range includes: Neurofibromatosis2
range includes: Nocognitiveimpairment
range includes: NotApplicable
range includes: Obesity
range includes: Obsessivecompulsivedisorder
range includes: OvaryCancer
range includes: PancreaticCancer
range includes: Parkinson'sdisease
range includes: Pathologicalaging
range includes: Progressivesupranuclearpalsy
range includes: ProstateCancer
range includes: Schizophrenia
range includes: SkinCancer
range includes: SubstanceRelatedDisorder
range includes: TouretteSyndrome
range includes: Traumaticbraininjury
range includes: Type2diabetesmellitus
range includes: Vasculardementia
range includes: WilliamsSyndrome
display name: diagnosis
required: sms:false

AD-DS
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: AD-DS
required: sms:false

AffectiveDisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Affective Disorder
required: sms:false

AlzheimerDisease
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Alzheimer Disease
required: sms:false

Alzheimerdiseasewithpsychosis
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Alzheimer disease with psychosis
required: sms:false

Amyotrophiclateralsclerosis
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: amyotrophic lateral sclerosis
required: sms:false

Anxiety
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: anxiety
required: sms:false

AutismSpectrumDisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Autism Spectrum Disorder
required: sms:false

BipolarDisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Bipolar Disorder
required: sms:false

BladderCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Bladder Cancer
required: sms:false

BrainCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Brain Cancer
required: sms:false

BreastCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Breast Cancer
required: sms:false

CervicalCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Cervical Cancer
required: sms:false

ColonCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Colon Cancer
required: sms:false

Control
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: control
required: sms:false

Corticobasaldegenerationdisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: corticobasal degeneration disorder
required: sms:false

CS-DS
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: CS-DS
required: sms:false

Dementia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: dementia
required: sms:false

Dystonia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: dystonia
required: sms:false

Essentialtremor
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: essential tremor
required: sms:false

FibrocysticBreastDisease
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Fibrocystic Breast Disease
required: sms:false

Frontotemporaldementia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: frontotemporal dementia
required: sms:false

Gliosis
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: gliosis
required: sms:false

Hypoxia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: hypoxia
required: sms:false

JuvenileMyelomonocyticLeukemia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Juvenile Myelomonocytic Leukemia
required: sms:false

Leukemia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Leukemia
required: sms:false

Lewybodydisease
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Lewy body disease
required: sms:false

Longevity
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Longevity
required: sms:false

LungCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Lung Cancer
required: sms:false

MajorDepressiveDisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Major Depressive Disorder
required: sms:false

MCI-DS
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: MCI-DS
required: sms:false

Mildcognitiveimpairment
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: mild cognitive impairment
required: sms:false

Multiplesystematrophy
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: multiple system atrophy
required: sms:false

Neurofibromatosis1
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Neurofibromatosis 1
required: sms:false

Neurofibromatosis2
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Neurofibromatosis 2
required: sms:false

Nocognitiveimpairment
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: no cognitive impairment
required: sms:false

Obesity
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: obesity
required: sms:false

Obsessivecompulsivedisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: obsessive compulsive disorder
required: sms:false

OvaryCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Ovary Cancer
required: sms:false

PancreaticCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Pancreatic Cancer
required: sms:false

Parkinson'sdisease
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Parkinson's disease
required: sms:false

Pathologicalaging
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: pathological aging
required: sms:false

Progressivesupranuclearpalsy
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: progressive supranuclear palsy
required: sms:false

ProstateCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Prostate Cancer
required: sms:false

Schizophrenia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Schizophrenia
required: sms:false

SkinCancer
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Skin Cancer
required: sms:false

SubstanceRelatedDisorder
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Substance Related Disorder
required: sms:false

TouretteSyndrome
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Tourette Syndrome
required: sms:false

Traumaticbraininjury
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: traumatic brain injury
required: sms:false

Type2diabetesmellitus
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: type 2 diabetes mellitus
required: sms:false

Vasculardementia
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: vascular dementia
required: sms:false

WilliamsSyndrome
type: Class
comment: TBD
subclass of: Diagnosis
is part of: schema.biothings.io
display name: Williams Syndrome
required: sms:false

SoftwareType
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: softwareType
required: sms:true

computationaltools
type: Property
comment: TBD
domain includes: SoftwareType
domain includes: ToolAccessibility
domain includes: ToolCmd
domain includes: ToolComputeRequirements
domain includes: ToolCost
domain includes: ToolDateLastModified
domain includes: ToolDocumentationNote
domain includes: ToolDocumentationType
domain includes: ToolDocumentationUrl
domain includes: ToolDoi
domain includes: ToolDownloadNote
domain includes: ToolDownloadType
domain includes: ToolDownloadUrl
domain includes: ToolDownloadVersion
domain includes: ToolEntityName
domain includes: ToolEntityRole
domain includes: ToolEntityType
domain includes: ToolFunctionNote
domain includes: ToolHomepage
domain includes: ToolInputData
domain includes: ToolInputFormat
domain includes: ToolLanguage
domain includes: ToolLicense
domain includes: ToolLinkNote
domain includes: ToolLinkType
domain includes: ToolLinkUrl
domain includes: ToolOperatingSystem
domain includes: ToolOperation
domain includes: ToolOutputData
domain includes: ToolOutputFormat
domain includes: ToolPackageDependencies
domain includes: ToolPackageDependenciesPresent
domain includes: ToolPubmedId
domain includes: ToolReleaseDate
domain includes: ToolTopic
domain includes: ToolType
domain includes: ToolVersion
is part of: schema.biothings.io
display name: computational tools
required: sms:false

ToolAccessibility
type: Class
comment: Whether there are non-monetary restrictions on accessing an online service
subclass of: Thing
is part of: schema.biothings.io
display name: toolAccessibility
required: sms:false

ToolCmd
type: Class
comment: Relevant command, command-line fragment, or option for executing this function/running the tool in this mode
subclass of: Thing
is part of: schema.biothings.io
display name: toolCmd
required: sms:false

ToolComputeRequirements
type: Class
comment: Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (examples: DirectX, Java or .NET runtime)
subclass of: Thing
is part of: schema.biothings.io
display name: toolComputeRequirements
required: sms:false

ToolCost
type: Class
comment: Monetary cost of acquiring the software
subclass of: Thing
is part of: schema.biothings.io
display name: toolCost
required: sms:false

ToolDateLastModified
type: Class
comment: The date indicating when the tool's entry was most recently modified or updated, providing a timestamp of the latest changes made to the tool's information
subclass of: Thing
is part of: schema.biothings.io
display name: toolDateLastModified
required: sms:false

ToolDocumentationNote
type: Class
comment: Comment about the documentation
subclass of: Thing
is part of: schema.biothings.io
display name: toolDocumentationNote
required: sms:false

ToolDocumentationType
type: Class
comment: Type of documentation that is linked to. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolDocumentationType
required: sms:false

ToolDocumentationUrl
type: Class
comment: Link to documentation on the web for the tool
subclass of: Thing
is part of: schema.biothings.io
display name: toolDocumentationUrl
required: sms:false

ToolDoi
type: Class
comment: The Digital Object Identifier (DOI) associated with the computational tool
subclass of: Thing
is part of: schema.biothings.io
display name: toolDoi
required: sms:true

ToolDownloadNote
type: Class
comment: Comment about the download
subclass of: Thing
is part of: schema.biothings.io
display name: toolDownloadNote
required: sms:false

ToolDownloadType
type: Class
comment: The type of data, information, or system that is obtained when the link is resolved
subclass of: Thing
is part of: schema.biothings.io
display name: toolDownloadType
required: sms:false

ToolDownloadUrl
type: Class
comment: Link to download (or repo providing a download) for the software
subclass of: Thing
is part of: schema.biothings.io
display name: toolDownloadUrl
required: sms:false

ToolDownloadVersion
type: Class
comment: Version information (typically a version number) of the software applicable to this download
subclass of: Thing
is part of: schema.biothings.io
display name: toolDownloadVersion
required: sms:false

ToolEntityName
type: Class
comment: Name of the entities that may be credited
subclass of: Thing
is part of: schema.biothings.io
display name: toolEntityName
required: sms:false

ToolEntityRole
type: Class
comment: Role performed by entity that is credited e.g. Developer
subclass of: Thing
is part of: schema.biothings.io
display name: toolEntityRole
required: sms:true

ToolEntityType
type: Class
comment: Types of entities that may be credited e.g. Person
subclass of: Thing
is part of: schema.biothings.io
display name: toolEntityType
required: sms:true

ToolFunctionNote
type: Class
comment: Concise comment about this function, if not apparent from the software description and EDAM annotations
subclass of: Thing
is part of: schema.biothings.io
display name: toolFunctionNote
required: sms:false

ToolHomepage
type: Class
comment: Homepage of the software, or some URL that best serves this purpose
subclass of: Thing
is part of: schema.biothings.io
display name: toolHomepage
required: sms:true

ToolInputData
type: Class
comment: Type of primary input data. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolInputData
required: sms:true

ToolInputFormat
type: Class
comment: Allowed format(s) of the input data. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolInputFormat
required: sms:true

ToolLanguage
type: Class
comment: Name of programming language the software source code was written in. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolLanguage
required: sms:false

ToolLicense
type: Class
comment: Software or data usage license. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolLicense
required: sms:false

ToolLinkNote
type: Class
comment: Comment about the link
subclass of: Thing
is part of: schema.biothings.io
display name: toolLinkNote
required: sms:false

ToolLinkType
type: Class
comment: The type of data, information or system that is obtained when the link is resolved. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolLinkType
required: sms:false

ToolLinkUrl
type: Class
comment: A link of some relevance to the software (URL)
subclass of: Thing
is part of: schema.biothings.io
display name: toolLinkUrl
required: sms:false

ToolOperatingSystem
type: Class
comment: The operating system supported by a downloadable software package. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolOperatingSystem
required: sms:false

ToolOperation
type: Class
comment: The basic operation(s) performed by this software function. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolOperation
required: sms:true

ToolOutputData
type: Class
comment: Type of primary output data. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolOutputData
required: sms:true

ToolOutputFormat
type: Class
comment: Allowed format(s) of the output data. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolOutputFormat
required: sms:true

ToolPackageDependencies
type: Class
comment: Specifies the software libraries, frameworks, or other components that a tool or package relies on for its proper functioning. This attribute helps users understand the prerequisites needed for installation and usage of the tool within a given computational environment
subclass of: Thing
is part of: schema.biothings.io
display name: toolPackageDependencies
required: sms:false

ToolPackageDependenciesPresent
type: Class
comment: Indicates whether the required package dependencies for tool are present
subclass of: Thing
is part of: schema.biothings.io
display name: toolPackageDependenciesPresent
required: sms:true

ToolPubmedId
type: Class
comment: The pubMed identifer associated with the development of the tool
subclass of: Thing
is part of: schema.biothings.io
display name: toolPubmedId
required: sms:false

ToolReleaseDate
type: Class
comment: The release date of a product or product model. This can be used to distinguish the exact variant of a product
subclass of: Thing
is part of: schema.biothings.io
display name: toolReleaseDate
required: sms:true

ToolTopic
type: Class
comment: General scientific domain the software serves, or other general category. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolTopic
required: sms:false

ToolType
type: Class
comment: A type of application software: a discrete software entity can have more than one type. Multiple values permitted, comma separated
subclass of: Thing
is part of: schema.biothings.io
display name: toolType
required: sms:true

ToolVersion
type: Class
comment: Version information (typically a version number) of the software applicable to this entry
subclass of: Thing
is part of: schema.biothings.io
display name: toolVersion
required: sms:false

Ethnicity
type: Class
comment: Ethnicity of individual
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: HispanicorLatino
range includes: NotHispanicorLatino
range includes: Notapplicable
range includes: Notcollected
range includes: Otherethnicity
range includes: Prefernottoanswer
range includes: unknown
display name: ethnicity
required: sms:true

HispanicorLatino
type: Class
comment: TBD
subclass of: Ethnicity
is part of: schema.biothings.io
display name: Hispanic or Latino
required: sms:false

NotHispanicorLatino
type: Class
comment: TBD
subclass of: Ethnicity
is part of: schema.biothings.io
display name: Not Hispanic or Latino
required: sms:false

Otherethnicity
type: Class
comment: TBD
subclass of: Ethnicity
is part of: schema.biothings.io
display name: Other ethnicity
required: sms:false

Prefernottoanswer
type: Class
comment: TBD
subclass of: Ethnicity
subclass of: Race
is part of: schema.biothings.io
display name: Prefer not to answer
required: sms:false

FamilyStudyParticipant
type: Class
comment: Indicates whether or not a file has data from a human participant involved in a family study (ex. LLFS)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
range includes: NotAssigned
display name: familyStudyParticipant
required: sms:false

Race
type: Class
comment: Race of individual
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AmericanIndianorAlaskaNative
range includes: AshkenaziJewish
range includes: Asian
range includes: BlackorAfricanAmerican
range includes: Multiracial
range includes: NativeHawaiianorPacificIslander
range includes: Notcollected
range includes: Notapplicable
range includes: Otherrace
range includes: Prefernottoanswer
range includes: unknown
range includes: White
display name: race
required: sms:true

AmericanIndianorAlaskaNative
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: American Indian or Alaska Native
required: sms:false

AshkenaziJewish
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Ashkenazi Jewish
required: sms:false

Asian
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Asian
required: sms:false

BlackorAfricanAmerican
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Black or African American
required: sms:false

Multiracial
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Multiracial
required: sms:false

NativeHawaiianorPacificIslander
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Native Hawaiian or Pacific Islander
required: sms:false

Otherrace
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: Other race
required: sms:false

White
type: Class
comment: TBD
subclass of: Race
is part of: schema.biothings.io
display name: White
required: sms:false

Sex
type: Class
comment: The biological sex of the individual
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Female
range includes: Male
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: unknown
display name: sex
required: sms:true

Female
type: Class
comment: TBD
subclass of: Sex
is part of: schema.biothings.io
display name: Female
required: sms:false

Male
type: Class
comment: TBD
subclass of: Sex
is part of: schema.biothings.io
display name: Male
required: sms:false

10xmultiome
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: 10x multiome
required: sms:false

16SrRNAseq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: 16SrRNAseq
required: sms:false

Activeavoidancelearningbehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: active avoidance learning behavior
required: sms:false

Anxiety-relatedbehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: anxiety-related behavior
required: sms:false

ATACSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: ATACSeq
required: sms:false

AtomicForceMicroscopy
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: atomicForceMicroscopy
required: sms:false

Autoradiography
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: autoradiography
required: sms:false

BakerLipidomics
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Baker Lipidomics
required: sms:false

BiocratesBileAcids
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Biocrates Bile Acids
required: sms:false

Biocratesp180
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Biocrates p180
required: sms:false

BiocratesQ500
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Biocrates Q500
required: sms:false

BisulfiteSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: bisulfiteSeq
required: sms:false

BloodChemistryMeasurement
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Blood Chemistry Measurement
required: sms:false

BrightfieldMicroscopy
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: brightfieldMicroscopy
required: sms:false

CellViabilityAssay
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: cellViabilityAssay
required: sms:false

ChIPSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: ChIPSeq
required: sms:false

CITESeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: CITESeq
required: sms:false

Contextualconditioningbehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: contextual conditioning behavior
required: sms:false

CUT&Tag
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: CUT&Tag
required: sms:false

DIA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: DIA
required: sms:false

DNAopticalmapping
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: DNA optical mapping
required: sms:false

Electrochemiluminescence
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: electrochemiluminescence
required: sms:false

Elevatedplusmazetest
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: elevated plus maze test
required: sms:false

ElevatedTmazeapparatusmethod
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: elevated T maze apparatus method
required: sms:false

ELISA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: ELISA
required: sms:false

ErrBisulfiteSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: errBisulfiteSeq
required: sms:false

ExomeSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: exomeSeq
required: sms:false

FIA-MSMS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: FIA-MSMS
required: sms:false

FitBark
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: FitBark
required: sms:false

Frailtyassessment
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: frailty assessment
required: sms:false

Genotyping
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Genotyping
required: sms:false

HI-C
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: HI-C
required: sms:false

HiChIPseq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: HiChIPseq
required: sms:false

Highcontentscreen
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: high content screen
required: sms:false

HPLC
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: HPLC
required: sms:false

HPLC-MSMS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: HPLC-MSMS
required: sms:false

Immunocytochemistry
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Immunocytochemistry
required: sms:false

Immunofluorescence
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: immunofluorescence
required: sms:false

Immunohistochemistry
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: immunohistochemistry
required: sms:false

Invivobioluminescence
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: in vivo bioluminescence
required: sms:false

ISOSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: ISOSeq
required: sms:false

JumpingLibrary
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: jumpingLibrary
required: sms:false

Kinestheticbehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: kinesthetic behavior
required: sms:false

Labelfreemassspectrometry
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: label free mass spectrometry
required: sms:false

LaserSpeckleImaging
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Laser Speckle Imaging
required: sms:false

LC-MS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: LC-MS
required: sms:false

LC-MSMS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: LC-MSMS
required: sms:false

LC-SRM
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: LC-SRM
required: sms:false

LeidenOxylipins
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Leiden Oxylipins
required: sms:false

LentiMPRA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: lentiMPRA
required: sms:false

LFP
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: LFP
required: sms:false

Liquidchromatography-electrochemicaldetection
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: liquid chromatography-electrochemical detection
required: sms:false

LncrnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: lncrnaSeq
required: sms:false

Locomotoractivationbehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: locomotor activation behavior
required: sms:false

Long-readrnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: long-read rnaSeq
required: sms:false

LTP
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: LTP
required: sms:false

MDMS-SL
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: MDMS-SL
required: sms:false

Memorybehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: memory behavior
required: sms:false

Metabolon
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Metabolon
required: sms:false

MethylationArray
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: methylationArray
required: sms:false

MIB/MS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: MIB/MS
required: sms:false

MicroRNAcounts
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: microRNAcounts
required: sms:false

MirnaArray
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: mirnaArray
required: sms:false

MirnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: mirnaSeq
required: sms:false

MRI
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: MRI
required: sms:false

MRNAcounts
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: mRNAcounts
required: sms:false

MudPIT
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: MudPIT
required: sms:false

M6A-rnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: m6A-rnaSeq
required: sms:false

NextGenerationTargetedSequencing
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: nextGenerationTargetedSequencing
required: sms:false

NightingaleNMR
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Nightingale NMR
required: sms:false

NOMe-Seq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: NOMe-Seq
required: sms:false

Noveltyresponsebehavior
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: novelty response behavior
required: sms:false

Openfieldtest
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: open field test
required: sms:false

OxBS-Seq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: oxBS-Seq
required: sms:false

Pharmacodynamics
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: pharmacodynamics
required: sms:false

Pharmacokinetics
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: pharmacokinetics
required: sms:false

Photograph
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: photograph
required: sms:false

PolymeraseChainReaction
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: polymeraseChainReaction
required: sms:false

PositronEmissionTomography
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Positron Emission Tomography
required: sms:false

Proximityextensionassay
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: proximity extension assay
required: sms:false

Questionnaire
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: questionnaire
required: sms:false

RaderLipidomics
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Rader Lipidomics
required: sms:false

RealTimePCR
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Real Time PCR
required: sms:false

Ribo-Seq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Ribo-Seq
required: sms:false

Rotarodperformancetest
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: rotarod performance test
required: sms:false

RnaArray
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: rnaArray
required: sms:false

RnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: rnaSeq
required: sms:false

RPPA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: RPPA
required: sms:false

SandwichELISA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: sandwich ELISA
required: sms:false

Sangersequencing
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Sanger sequencing
required: sms:false

Scale
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scale
required: sms:false

ScATACSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scATACSeq
required: sms:false

ScCGIseq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scCGIseq
required: sms:false

ScirnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scirnaSeq
required: sms:false

ScrnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scrnaSeq
required: sms:false

ScwholeGenomeSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: scwholeGenomeSeq
required: sms:false

SiMoA
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: SiMoA
required: sms:false

SnpArray
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: snpArray
required: sms:false

SnATACSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: snATACSeq
required: sms:false

SnrnaSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: snrnaSeq
required: sms:false

Spontaneousalternation
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: spontaneous alternation
required: sms:false

STARRSeq
type: Class
comment: TBD
subclass of: LibraryPrep
subclass of: Assay
is part of: schema.biothings.io
display name: STARRSeq
required: sms:false

TMTquantitation
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: TMT quantitation
required: sms:false

TractionForceMicroscopy
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: tractionForceMicroscopy
required: sms:false

UPLC-MSMS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: UPLC-MSMS
required: sms:false

UPLC-ESI-QTOF-MS
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: UPLC-ESI-QTOF-MS
required: sms:false

UCDavisGCTOF
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: UC Davis GCTOF
required: sms:false

UCSDUntargetedMetabolomics
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: UCSD Untargeted Metabolomics
required: sms:false

VernierCaliper
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Vernier Caliper
required: sms:false

VonFreytest
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: von Frey test
required: sms:false

WesternBlot
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: westernBlot
required: sms:false

Wheelrunning
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: wheel running
required: sms:false

Whole-cellpatchclamp
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: whole-cell patch clamp
required: sms:false

WholeGenomeSeq
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: wholeGenomeSeq
required: sms:false

WishartCatecholamines
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Wishart Catecholamines
required: sms:false

WishartHighValueMetabolites
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Wishart High Value Metabolites
required: sms:false

ZenoElectronicWalkway
type: Class
comment: TBD
subclass of: Assay
is part of: schema.biothings.io
display name: Zeno Electronic Walkway
required: sms:false

ControlType
type: Class
comment: Control samples suitable for normalization and batch correction.Possible example values - GIS, GoldenWest, NIST SRM 1950, AIBL pool,Baker pool,water plus Baker ISTD, study pool, internal standards, Other, Unknown, Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: AIBLpool
range includes: Bakerpool
range includes: Blankinjection
range includes: GIS
range includes: GoldenWest
range includes: NISTSRM1950
range includes: Qcmix
range includes: Replicate
range includes: Studypool
range includes: WaterplusBakerISTD
display name: controlType
required: sms:false

AIBLpool
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: AIBL pool
required: sms:false

Bakerpool
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: Baker pool
required: sms:false

Blankinjection
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: blank injection
required: sms:false

GIS
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: GIS
required: sms:false

GoldenWest
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: GoldenWest
required: sms:false

NISTSRM1950
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: NIST SRM 1950
required: sms:false

Qcmix
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: qc mix
required: sms:false

Replicate
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: Replicate
required: sms:false

Studypool
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: study pool
required: sms:false

WaterplusBakerISTD
type: Class
comment: TBD
subclass of: ControlType
is part of: schema.biothings.io
display name: water plus Baker ISTD
required: sms:false

PlatformLocation
type: Class
comment: The name of the laboratory, facility, vendor, company, or location where the data generation platform was located, provided by the data contributor. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: platformLocation
required: sms:true

Age
type: Class
comment: Age of the individual (age in years of the individual at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.)
subclass of: manifestColumn
is part of: schema.biothings.io
display name: age
required: sms:true

Cohort
type: Class
comment: Name of the cohort the individual belongs to
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: ArivaleScientificWellnessStudy(SWS)
range includes: CardiovascularHealthStudy(CHS)
range includes: Centenarian
range includes: DenmarkFamily
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: Other
range includes: StudyofOsteoporoticFractures(SOF)
range includes: SuperAgersFamilyStudy
range includes: unknown
range includes: USFamily
display name: cohort
required: sms:false

ArivaleScientificWellnessStudy(SWS)
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: Arivale Scientific Wellness Study (SWS)
required: sms:false

CardiovascularHealthStudy(CHS)
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: Cardiovascular Health Study (CHS)
required: sms:false

Centenarian
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: Centenarian
required: sms:false

DenmarkFamily
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: Denmark Family
required: sms:false

StudyofOsteoporoticFractures(SOF)
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: Study of Osteoporotic Fractures (SOF)
required: sms:false

SuperAgersFamilyStudy
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: SuperAgers Family Study
required: sms:false

http://schema.biothings.io/TheHealthAgingandBodyCompositionStuday(HealthABC)
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: The Health Aging and Body Composition Studay (HealthABC)
required: sms:false

http://schema.biothings.io/TheOsteoporoticFracturesinMen(MrOS)Study
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: The Osteoporotic Fractures in Men (MrOS) Study
required: sms:false

USFamily
type: Class
comment: TBD
subclass of: Cohort
is part of: schema.biothings.io
display name: US Family
required: sms:false

HasADLs
type: Class
comment: The datafile and/or individualID includes cognitive variables and/or scores from the Activities of daily living (ADLs)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
display name: hasADLs
required: sms:false

HasCASI
type: Class
comment: The datafile and/or individualID includes cognitive variables and/or scores from the Cognitive Abilities Screening Instrument (CASI)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
display name: hasCASI
required: sms:false

HasCDR
type: Class
comment: The datafile and/or individualID includes cognitive variables and/or scores from the The Clinical Dementia Rating (CDR)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
display name: hasCDR
required: sms:false

HasMMSE
type: Class
comment: The datafile and/or individualID includes cognitive variables and/or scores from the Mini-Mental State Examination (MMSE)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
display name: hasMMSE
required: sms:false

HasMoCA
type: Class
comment: The datafile and/or individualID includes cognitive variables and/or scores from the Montreal Cognitive Assessment (MoCA)
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Yes
range includes: No
display name: hasMoCA
required: sms:false

IndividualID
type: Class
comment: Identifying string linked to the individual or animal being studied, provided by the data contributor
subclass of: manifestColumn
is part of: schema.biothings.io
display name: individualID
required: sms:true

IsMultiSpecimen
type: Class
comment: Boolean flag indicating whether or not a file has data for multiple specimens
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: True
range includes: Fasle
range includes: Notassigned
display name: isMultiSpecimen
required: sms:true

Fasle
type: Class
comment: TBD
subclass of: IsMultiSpecimen
is part of: schema.biothings.io
display name: fasle
required: sms:false

Species
type: Class
comment: The name of a species (typically a taxonomic group) of organism.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Cross-SpeciesAvian
range includes: Cross-SpeciesMammalian
range includes: Human
range includes: Mouse
display name: species
required: sms:true

Cross-SpeciesAvian
type: Class
comment: TBD
subclass of: Species
is part of: schema.biothings.io
display name: Cross-Species Avian
required: sms:false

Cross-SpeciesMammalian
type: Class
comment: TBD
subclass of: Species
is part of: schema.biothings.io
display name: Cross-Species Mammalian
required: sms:false

Human
type: Class
comment: TBD
subclass of: Species
is part of: schema.biothings.io
display name: Human
required: sms:false

Mouse
type: Class
comment: TBD
subclass of: Species
is part of: schema.biothings.io
display name: Mouse
required: sms:false

SpectrometerFrequency
type: Class
comment: The frequency at which a spectrometer causes hydrogen atoms to resonate (in MHz)
subclass of: manifestColumn
is part of: schema.biothings.io
display name: spectrometerFrequency
required: sms:false

DirectionalBSseqLibrary
type: Class
comment: Indicates whether or not the bisulfiteSeq library is directional
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: TRUE
range includes: FALSE
range includes: unknown
range includes: Notcollected
range includes: Notapplicable
range includes: Notspecified
display name: directionalBSseqLibrary
required: sms:true

GDNAconc
type: Class
comment: gDNA Concentration in ng. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: gDNAconc
required: sms:true

IsStranded
type: Class
comment: Whether or not the library is stranded.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: FALSE
range includes: TRUE
display name: isStranded
required: sms:true

LambdaDNAconc
type: Class
comment: Lambda DNA spike-in concentration in ng. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: lambdaDNAconc
required: sms:true

LibraryPrep
type: Class
comment: The general strategy by which the library was prepared. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Amplicon
range includes: CellHashing
range includes: ChromiumSingleCell3'
range includes: DNALibraryConstruction
range includes: EndItDNAEndRepairKit
range includes: KapaHyperPrep
range includes: LncRNAenrichment
range includes: MethylSeq
range includes: MiRNAenrichment
range includes: Multiome
range includes: MULTIseq
range includes: PCRfree
range includes: PolyAselection
range includes: Proximityligation
range includes: RRNAdepletion
range includes: SnIsoSeq
range includes: SPLITseq
range includes: STARRSeq
range includes: SureCell
range includes: TotalRNA
range includes: unknown
range includes: Notcollected
range includes: Notapplicable
range includes: Notspecified
display name: libraryPrep
required: sms:true

Amplicon
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: amplicon
required: sms:false

CellHashing
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: cellHashing
required: sms:false

ChromiumSingleCell3'
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: Chromium Single Cell 3'
required: sms:false

DNALibraryConstruction
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: DNALibraryConstruction
required: sms:false

EndItDNAEndRepairKit
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: EndItDNAEndRepairKit
required: sms:false

KapaHyperPrep
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: KapaHyperPrep
required: sms:false

LncRNAenrichment
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: lncRNAenrichment
required: sms:false

MethylSeq
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: methylSeq
required: sms:false

MiRNAenrichment
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: miRNAenrichment
required: sms:false

Multiome
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: multiome
required: sms:false

MULTIseq
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: MULTIseq
required: sms:false

PCRfree
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: PCRfree
required: sms:false

PolyAselection
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: polyAselection
required: sms:false

Proximityligation
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: proximity ligation
required: sms:false

RRNAdepletion
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: rRNAdepletion
required: sms:false

SnIsoSeq
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: snIsoSeq
required: sms:false

SPLITseq
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: SPLITseq
required: sms:false

SureCell
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: SureCell
required: sms:false

TotalRNA
type: Class
comment: TBD
subclass of: LibraryPrep
is part of: schema.biothings.io
display name: totalRNA
required: sms:false

LibraryPreparationMethod
type: Class
comment: Method by which library was prepared. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: 10x
range includes: Accel-NGS2SPlus
range includes: Accel-NGSMethyl-Seq
range includes: CEL-seq
range includes: Drop-Seq
range includes: NEBNext
range includes: NexteraXT
range includes: Omni-ATAC
range includes: Sac-seq
range includes: Smart-seq1
range includes: Smart-seq2
range includes: Smart-seq4
range includes: SMRTbell
range includes: TruSeq
range includes: UltralowMethyl-Seq
range includes: IlluminaDNAPCR-FreePrepKit
range includes: QiagenPreAnalytiXPAXgeneBloodmiRNAKit
range includes: QiagenRneasyExtractionKit
range includes: unknown
range includes: Notcollected
range includes: Notapplicable
range includes: Notspecified
display name: libraryPreparationMethod
required: sms:true

10x
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: 10x
required: sms:false

Accel-NGS2SPlus
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Accel-NGS 2S Plus
required: sms:false

Accel-NGSMethyl-Seq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Accel-NGS Methyl-Seq
required: sms:false

CEL-seq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: CEL-seq
required: sms:false

Drop-Seq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Drop-Seq
required: sms:false

NEBNext
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: NEBNext
required: sms:false

NexteraXT
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: NexteraXT
required: sms:false

Omni-ATAC
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Omni-ATAC
required: sms:false

Sac-seq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: sac-seq
required: sms:false

Smart-seq1
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Smart-seq1
required: sms:false

Smart-seq2
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Smart-seq2
required: sms:false

Smart-seq4
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Smart-seq4
required: sms:false

SMRTbell
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: SMRTbell
required: sms:false

TruSeq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: TruSeq
required: sms:false

UltralowMethyl-Seq
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Ultralow Methyl-Seq
required: sms:false

IlluminaDNAPCR-FreePrepKit
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Illumina DNA PCR-Free Prep Kit
required: sms:false

QiagenPreAnalytiXPAXgeneBloodmiRNAKit
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Qiagen PreAnalytiX PAXgene Blood miRNA Kit
required: sms:false

QiagenRneasyExtractionKit
type: Class
comment: TBD
subclass of: LibraryPreparationMethod
is part of: schema.biothings.io
display name: Qiagen Rneasy Extraction Kit
required: sms:false

LibraryVersion
type: Class
comment: Library Version- for example, rnaSeq 10x library version. Provide a value OR provide one of these values - Unknown Not collected, Not applicable, Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: libraryVersion
required: sms:true

MeanCoverage
type: Class
comment: Total number of bases covered by ATAC-seq reads/size of genome. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: meanCoverage
required: sms:true

PcrCycles
type: Class
comment: Number of PCR cycles to amplify transposased DNA fragments. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: pcrCycles
required: sms:true

ReadLength
type: Class
comment: The length of the read. Provide a value or Unknown Not collected Not applicable Not specified
subclass of: manifestColumn
is part of: schema.biothings.io
display name: readLength
required: sms:true

ReadStrandOrigin
type: Class
comment: The strand from which the read originates in a strand-specific protocol.
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Forward
range includes: Reverse
range includes: Stranded
range includes: Unstranded
range includes: unknown
range includes: Notcollected
range includes: Notspecified
range includes: Notapplicable
display name: readStrandOrigin
required: sms:true

Forward
type: Class
comment: TBD
subclass of: ReadStrandOrigin
is part of: schema.biothings.io
display name: forward
required: sms:false

Reverse
type: Class
comment: TBD
subclass of: ReadStrandOrigin
is part of: schema.biothings.io
display name: reverse
required: sms:false

Unstranded
type: Class
comment: TBD
subclass of: ReadStrandOrigin
is part of: schema.biothings.io
display name: unstranded
required: sms:false

RunType
type: Class
comment: The type of run
subclass of: manifestColumn
is part of: schema.biothings.io
range includes: Notapplicable
range includes: Notcollected
range includes: Notspecified
range includes: PairedEnd
range includes: SingleEnd
range includes: SingleEndpairedEnd
range includes: unknown
display name: runType
required: sms:true

PairedEnd
type: Class
comment: TBD
subclass of: RunType
is part of: schema.biothings.io
display name: pairedEnd
required: sms:false

SingleEnd
type: Class
comment: TBD
subclass of: RunType
is part of: schema.biothings.io
display name: singleEnd
required: sms:false

SingleEndpairedEnd
type: Class
comment: TBD
subclass of: RunType
is part of: schema.biothings.io
display name: singleEnd pairedEnd
required: sms:false

TotalReads
type: Class
comment: Total number of sequencing reads from a library.
subclass of: manifestColumn
is part of: schema.biothings.io
display name: totalReads
required: sms:true

AssayRNAseqTemplate
type: Class
comment: Template for RNAseq
subclass of: Component
is part of: schema.biothings.io
display name: assay_RNAseq_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: ReferenceTranscriptID
requires dependency: RepositoryName
requires dependency: TranscriptType
requires dependency: ResultUnit
requires dependency: ValueReported
requires dependency: LibraryPreparationMethod
requires dependency: LibraryVersion
requires dependency: IsStranded
requires dependency: ReadStrandOrigin
requires dependency: ReadLength
requires dependency: ReadLengthUnits
requires dependency: RunType
requires dependency: TotalReads
requires dependency: Component

AssayBsSeqTemplate
type: Class
comment: Template for bsSeq
subclass of: Component
is part of: schema.biothings.io
display name: assay_bsSeq_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: ReferenceTranscriptID
requires dependency: DnaBatchID
requires dependency: DnaBatchSize
requires dependency: DnaBatchSizeUnit
requires dependency: LibraryBatchID
requires dependency: LibraryPrep
requires dependency: LibraryPreparationMethod
requires dependency: LibraryVersion
requires dependency: SequencingBatchID
requires dependency: SequencingBatchSize
requires dependency: SequencingBatchSizeUnit
requires dependency: IsStranded
requires dependency: ReadStrandOrigin
requires dependency: ReadLength
requires dependency: ReadLengthUnits
requires dependency: RunType
requires dependency: TotalReads
requires dependency: DirectionalBSseqLibrary
requires dependency: GDNAconc
requires dependency: LambdaDNAconc
requires dependency: PcrCycles
requires dependency: MeanCoverage
requires dependency: ConversionRatio
requires dependency: ConversionRatioUnits
requires dependency: EnrichmentMethod
requires dependency: Component

AssayMetabolomicsTemplate
type: Class
comment: Template for Metabolomics
subclass of: Component
is part of: schema.biothings.io
display name: assay_metabolomics_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: InstrumentModel
requires dependency: SamplePrepProtocol
requires dependency: DataFile
requires dependency: DatabaseSource
requires dependency: DatabaseWeblink
requires dependency: DatabaseName
requires dependency: MsTarget
requires dependency: MsAssayTechnique
requires dependency: MsAnalyteType
requires dependency: SampleIntroduction
requires dependency: ExtractionMethod
requires dependency: AcquisitionMode
requires dependency: AcquisitionSoftware
requires dependency: AcquistionSoftwareVersion
requires dependency: SpectrometerFrequency
requires dependency: HasIonizationSource
requires dependency: IonProperty
requires dependency: VacuumPressure
requires dependency: VacuumPressureUnit
requires dependency: LensVoltages
requires dependency: LensVoltagesUnit
requires dependency: GasFlowTemperature
requires dependency: GasFlowTemperatureUnit
requires dependency: HasAssayControl
requires dependency: ControlType
requires dependency: ExperimentalBatchSize
requires dependency: ExperimentalBatchSizeUnit
requires dependency: BatchSize
requires dependency: BatchSizeUnit
requires dependency: BatchID
requires dependency: BatchLabel
requires dependency: SampleBatchID
requires dependency: SampleBatchSize
requires dependency: SampleBatchSizeUnit
requires dependency: AcquisitionBatchID
requires dependency: AcquisitionBatchSize
requires dependency: AcquisitionBatchSizeUnit
requires dependency: ProcessingBatchID
requires dependency: ProcessingBatchSize
requires dependency: ProcessingBatchSizeUnit
requires dependency: Component

AssayMetagenomicsTemplate
type: Class
comment: Template for Metagenomics
subclass of: Component
is part of: schema.biothings.io
display name: assay_metagenomics_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: ExperimentType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: InstrumentModel
requires dependency: SamplePrepProtocol
requires dependency: DataFile
requires dependency: DatabaseSource
requires dependency: DatabaseWeblink
requires dependency: DatabaseName
requires dependency: DatabaseVersion
requires dependency: DatabaseLibrary
requires dependency: LibraryPrep
requires dependency: LibSize
requires dependency: Mid
requires dependency: AssemblyName
requires dependency: NucleAcidExt
requires dependency: SourceMatID
requires dependency: LibReadsSeqd
requires dependency: NumberContig
requires dependency: LibLayout
requires dependency: AssemblyQual
requires dependency: LibVector
requires dependency: Adapters
requires dependency: AssemblySoftware
requires dependency: ExperimentalFactor
requires dependency: AssociatedResource
requires dependency: Sop
requires dependency: TargetGene
requires dependency: SeqMethod
requires dependency: SeqPlatform
requires dependency: DNAextraction
requires dependency: Component

AssayMicrobiomeTemplate
type: Class
comment: Template for Microbiome
subclass of: Component
is part of: schema.biothings.io
display name: assay_microbiome_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: ExtractionMethod
requires dependency: LibraryBatchID
requires dependency: SequencingBatchID
requires dependency: SequencingBatchSize
requires dependency: SequencingBatchSizeUnit
requires dependency: DnaBatchID
requires dependency: DnaBatchSize
requires dependency: DnaBatchSizeUnit
requires dependency: LibraryPrep
requires dependency: LibraryPreparationMethod
requires dependency: LibraryVersion
requires dependency: IsStranded
requires dependency: ReadStrandOrigin
requires dependency: ReadLength
requires dependency: ReadLengthUnits
requires dependency: RunType
requires dependency: TotalReads
requires dependency: Component

AssayPhenotypeHumanTemplate
type: Class
comment: Template for Phenotype_human
subclass of: Component
is part of: schema.biothings.io
display name: assay_phenotype_human_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: Cohort
requires dependency: SpeciesGroup
requires dependency: Sex
requires dependency: Race
requires dependency: Ethnicity
requires dependency: EthnicGroupCode
requires dependency: Age
requires dependency: DiagnosisStatus
requires dependency: Diagnosis
requires dependency: Component

AssayProteomicsTemplate
type: Class
comment: Template for Proteomics
subclass of: Component
is part of: schema.biothings.io
display name: assay_proteomics_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: ExperimentType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: InstrumentModel
requires dependency: SamplePrepProtocol
requires dependency: DataFile
requires dependency: DatabaseSource
requires dependency: DatabaseWeblink
requires dependency: DatabaseName
requires dependency: ModificationParameters
requires dependency: QuantationStrategy
requires dependency: LabelQuantitation
requires dependency: LabelFreeQuantitation
requires dependency: IsobaricLabelingReagent
requires dependency: MsTarget
requires dependency: MsAssayTechnique
requires dependency: MsAnalyteType
requires dependency: DigestionMethod
requires dependency: DigestionReagent
requires dependency: FractionIdentifier
requires dependency: EnrichmentStrategy
requires dependency: Enrichment
requires dependency: Component

AssayScRNAseqTemplate
type: Class
comment: Template for scRNAseq
subclass of: Component
is part of: schema.biothings.io
display name: assay_scRNAseq_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: ReferenceTranscriptID
requires dependency: RepositoryName
requires dependency: TranscriptType
requires dependency: ResultUnit
requires dependency: ValueReported
requires dependency: RnaBatchID
requires dependency: RnaBatchSize
requires dependency: RnaBatchSizeUnit
requires dependency: LibraryBatchID
requires dependency: SequencingBatchID
requires dependency: SequencingBatchSize
requires dependency: SequencingBatchSizeUnit
requires dependency: LibraryPrep
requires dependency: LibraryPreparationMethod
requires dependency: LibraryVersion
requires dependency: IsStranded
requires dependency: ReadStrandOrigin
requires dependency: ReadLength
requires dependency: ReadLengthUnits
requires dependency: RunType
requires dependency: TotalReads
requires dependency: Component

AssayWholeGenomeSequencingTemplate
type: Class
comment: Template for Whole_Genome_Sequencing
subclass of: Component
is part of: schema.biothings.io
display name: assay_whole_genome_sequencing_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: SampleType
requires dependency: MeasurementTechnique
requires dependency: TechnologyPlatformVersion
requires dependency: PlatformLocation
requires dependency: ReferenceTranscriptID
requires dependency: RepositoryName
requires dependency: TranscriptType
requires dependency: ResultUnit
requires dependency: ValueReported
requires dependency: RnaBatchID
requires dependency: LibraryBatchID
requires dependency: SequencingBatchID
requires dependency: LibraryPrep
requires dependency: LibraryPreparationMethod
requires dependency: LibraryVersion
requires dependency: IsStranded
requires dependency: ReadStrandOrigin
requires dependency: ReadLength
requires dependency: ReadLengthUnits
requires dependency: RunType
requires dependency: TotalReads
requires dependency: Component

BiospecimenHumanTemplate
type: Class
comment: Template for Biospecimen_human
subclass of: Component
is part of: schema.biothings.io
display name: biospecimen_human_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: SpecimenID
requires dependency: IsMultiSpecimen
requires dependency: SpecimenType
requires dependency: MeasurementTechnique
requires dependency: SpecimenAge
requires dependency: SamplingAge
requires dependency: Organ
requires dependency: Tissue
requires dependency: TissueVolume
requires dependency: TissueWeight
requires dependency: SpecimenSource
requires dependency: NucleicAcidSource
requires dependency: CellType
requires dependency: FastingState
requires dependency: IsPostMortem
requires dependency: Component

BiospecimenNonHumanTemplate
type: Class
comment: Template for Biospecimen_non_Human
subclass of: Component
is part of: schema.biothings.io
display name: biospecimen_non_human_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: SpecimenID
requires dependency: IsMultiSpecimen
requires dependency: SpecimenType
requires dependency: Assay
requires dependency: SpecimenAge
requires dependency: SamplingAge
requires dependency: Organ
requires dependency: Tissue
requires dependency: TissueVolume
requires dependency: TissueWeight
requires dependency: SpecimenSource
requires dependency: NucleicAcidSource
requires dependency: CellType
requires dependency: FastingState
requires dependency: IsPostMortem
requires dependency: Component

ComputationalToolsTemplate
type: Class
comment: Annotations for computational tools on the ELITE Portal
subclass of: Component
is part of: schema.biothings.io
display name: computational_tools_template
required: sms:false
requires dependency: DisplayName
requires dependency: Program
requires dependency: Institution
requires dependency: ToolType
requires dependency: SoftwareType
requires dependency: Grants
requires dependency: Contributor
requires dependency: Summary
requires dependency: Documentation
requires dependency: ResourceType
requires dependency: IsFeatured
requires dependency: Project
requires dependency: ToolAccessibility
requires dependency: ToolCmd
requires dependency: ToolComputeRequirements
requires dependency: ToolCost
requires dependency: ToolDateLastModified
requires dependency: ToolDocumentationNote
requires dependency: ToolDocumentationType
requires dependency: ToolDocumentationUrl
requires dependency: ToolDownloadNote
requires dependency: ToolDownloadType
requires dependency: ToolDownloadUrl
requires dependency: ToolDownloadVersion
requires dependency: ToolEntityName
requires dependency: ToolEntityRole
requires dependency: ToolEntityType
requires dependency: ToolFunctionNote
requires dependency: ToolHomepage
requires dependency: ToolInputData
requires dependency: ToolInputFormat
requires dependency: ToolLanguage
requires dependency: ToolLicense
requires dependency: ToolLinkNote
requires dependency: ToolLinkType
requires dependency: ToolLinkUrl
requires dependency: ToolOperatingSystem
requires dependency: ToolOperation
requires dependency: ToolOutputData
requires dependency: ToolOutputFormat
requires dependency: ToolPackageDependencies
requires dependency: ToolPackageDependenciesPresent
requires dependency: ToolPubmedId
requires dependency: ToolReleaseDate
requires dependency: ToolTopic
requires dependency: ToolVersion
requires dependency: ToolDoi

FileAnnotationTemplate
type: Class
comment: Base annotations for files in synapse
subclass of: Component
is part of: schema.biothings.io
display name: file_annotation_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: SpecimenID
requires dependency: IsMultiSpecimen
requires dependency: SpeciesName
requires dependency: SpeciesGroup
requires dependency: FamilyStudyParticipant
requires dependency: Assay
requires dependency: FileFormat
requires dependency: Consortium
requires dependency: ProjectShortName
requires dependency: StudyKey
requires dependency: Grant
requires dependency: ResourceType
requires dependency: DataType
requires dependency: DataSubtype
requires dependency: MetadataType
requires dependency: AnalysisType
requires dependency: IsModelSystem
requires dependency: ModelSystemType
requires dependency: Component

Grant
type: Class
comment: TBD
subclass of: Thing
is part of: schema.biothings.io
display name: grant
required: sms:false

GenotypingHumanTemplate
type: Class
comment: Template for Genotyping_Human
subclass of: Component
is part of: schema.biothings.io
display name: genotyping_human_template
required: sms:false
requires dependency: Filename
requires dependency: SpecimenID
requires dependency: Stage
requires dependency: NumberIndividuals
requires dependency: SampleType
requires dependency: UseReagent
requires dependency: ReagentIDs
requires dependency: ReagentName
requires dependency: ReagentManufacturer
requires dependency: ReagentCatalogNumber
requires dependency: ReagentLotNumber
requires dependency: ReagentWeblink
requires dependency: ReagentContact
requires dependency: UseTreatment
requires dependency: TreatmentIDs
requires dependency: TreatmentName
requires dependency: TreatmentAmountValue
requires dependency: TreatmentAmountUnit
requires dependency: TreatmentDurationValue
requires dependency: TreatmentDurationUnit
requires dependency: TreatmentTemperatureValue
requires dependency: TreatmentTemperatureUnit
requires dependency: MeasurementTechnique
requires dependency: GenotypeTechnology
requires dependency: ArrayManufacturer
requires dependency: ArrayInformation
requires dependency: Imputation
requires dependency: ImputationPanel
requires dependency: ImputationSoftware
requires dependency: VariantCount
requires dependency: StatisticalModel
requires dependency: AdjustedCovariates
requires dependency: ReportedTrait
requires dependency: BackgroundTrait
requires dependency: UseReadMeFile
requires dependency: ReadmeFile
requires dependency: UseSummaryFile
requires dependency: SummaryFile
requires dependency: SummaryStatisticsAssembly
requires dependency: Component

IndividualHumanTemplate
type: Class
comment: Template for Individual_Human
subclass of: Component
is part of: schema.biothings.io
display name: individual_human_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: Cohort
requires dependency: StudyCode
requires dependency: FieldCenterCode
requires dependency: VisitCode
requires dependency: CountryCode
requires dependency: ConsentGroupID
requires dependency: SpeciesGroup
requires dependency: Sex
requires dependency: Race
requires dependency: Ethnicity
requires dependency: EthnicGroupCode
requires dependency: Age
requires dependency: DiagnosisStatus
requires dependency: Diagnosis
requires dependency: HasMoCA
requires dependency: HasCASI
requires dependency: HasCDR
requires dependency: HasMMSE
requires dependency: HasADLs
requires dependency: Component

IndividualNonHumanTemplate
type: Class
comment: Template for Individual_non_Human
subclass of: Component
is part of: schema.biothings.io
display name: individual_non_human_template
required: sms:false
requires dependency: Filename
requires dependency: IndividualID
requires dependency: StudyCode
requires dependency: Taxon
requires dependency: SpeciesGroup
requires dependency: SpeciesName
requires dependency: CommonName
requires dependency: Sex
requires dependency: LifeStage
requires dependency: SpeciesAge
requires dependency: CaptivityStatus
requires dependency: CaptivityDuration
requires dependency: Component

StudyFolderTemplate
type: Class
comment: Annotations for study folders
subclass of: Component
is part of: schema.biothings.io
display name: study_folder_template
required: sms:false
requires dependency: StudyKey
requires dependency: StudyName
requires dependency: ProjectShortName
requires dependency: ProjectFullName
requires dependency: DataTypeAll
requires dependency: Species
requires dependency: SpecimenType
requires dependency: StudyAbstract
requires dependency: StudyDescription
requires dependency: StudyFocus
requires dependency: Program
requires dependency: GrantNumber
requires dependency: StudyWiki
requires dependency: Acknowledgment
requires dependency: Methods
requires dependency: RelatedStudies
requires dependency: StudyType
requires dependency: IsModelSystem
requires dependency: IsFeatured
requires dependency: AckContext
requires dependency: StudyMetadata
requires dependency: AccessReqs
requires dependency: IsReleased
requires dependency: NewsRelease
requires dependency: MetadataType
requires dependency: Component