# seAMLess local stack.
#
#   docker compose up            # build (first run only) and start everything
#   open http://localhost:3000
#
# Reference data and molecular-tool artifacts are bind-mounted from ./backend
# because they are not in git. See docs/DOCKER.md.

name: seamless

services:
  # --------------------------------------------------------------------------
  # R plumber compute API
  # --------------------------------------------------------------------------
  r-backend:
    build:
      context: .
      dockerfile: docker/r-backend/Dockerfile
      args:
        # Set to 0 to skip the torch/Bridge environment (much faster build).
        WITH_BRIDGE: ${WITH_BRIDGE:-1}
    image: seamless/r-backend:local
    environment:
      R_BACKEND_HOST: 0.0.0.0
      R_BACKEND_PORT: 5555
      R_ENV: ${R_ENV:-production}
      SEAMLESS_UPLOADS_DIR: /shared/uploads
      # Used by /ai-report; leave unset to disable that endpoint.
      OPENAI_API_KEY: ${OPENAI_API_KEY:-}
    volumes:
      # Whole backend tree: source, reference data, tool artifacts, user cache.
      - ./backend:/app/backend
      # Uploads must be visible at the SAME path in both containers: the
      # service hands the R backend absolute file paths.
      - uploads:/shared/uploads
      # ALLCatchRbcrabl1 is compiled on first run; keep it across restarts.
      - r-libs:/opt/rlibs
    ports:
      - "${R_BACKEND_PORT:-5555}:5555"
    healthcheck:
      test: ["CMD-SHELL", "curl -fsS http://127.0.0.1:5555/molecular-tools?disease=aml >/dev/null || exit 1"]
      interval: 30s
      timeout: 10s
      # The first plumber boot parses a 3.5k-line API and loads reference data.
      start_period: 300s
      retries: 5
    restart: unless-stopped

  # --------------------------------------------------------------------------
  # Node API service (auth + proxy to the compute API)
  # --------------------------------------------------------------------------
  service:
    build:
      context: .
      dockerfile: docker/service/Dockerfile
      target: ${SERVICE_TARGET:-dev}
    image: seamless/service:local
    environment:
      NODE_ENV: ${NODE_ENV:-development}
      PORT: 3001
      SEAMLESS_COMPUTE_BACKEND_URL: http://r-backend:5555
      SEAMLESS_UPLOADS_DIR: /shared/uploads
      SEAMLESS_CORS_ORIGINS: ${SEAMLESS_CORS_ORIGINS:-http://localhost:3000,http://127.0.0.1:3000}
      # Either run with the dev bypass...
      SEAMLESS_DEV_AUTH: ${SEAMLESS_DEV_AUTH:-1}
      SEAMLESS_DEV_USER_EMAIL: ${SEAMLESS_DEV_USER_EMAIL:-dev@localhost}
      # ...or point this at a mounted Firebase service account JSON.
      SEAMLESS_FIREBASE_CREDENTIALS: ${SEAMLESS_FIREBASE_CREDENTIALS:-}
    volumes:
      - ./backend/service/src:/app/src
      - ./backend/service/tsconfig.json:/app/tsconfig.json:ro
      # Keep the image's Linux node_modules, not the host's.
      - /app/node_modules
      - uploads:/shared/uploads
    ports:
      - "${SERVICE_PORT:-3001}:3001"
    depends_on:
      r-backend:
        condition: service_started
    healthcheck:
      test: ["CMD-SHELL", "curl -fsS http://127.0.0.1:3001/ >/dev/null || exit 1"]
      interval: 15s
      timeout: 5s
      start_period: 60s
      retries: 5
    restart: unless-stopped

  # --------------------------------------------------------------------------
  # Vite dev server
  # --------------------------------------------------------------------------
  frontend:
    build:
      context: .
      dockerfile: docker/frontend/Dockerfile
      target: dev
    image: seamless/frontend:local
    environment:
      VITE_API_BASE_URL: ${VITE_API_BASE_URL:-http://localhost:3001/v1}
      VITE_DEV_AUTH: ${VITE_DEV_AUTH:-1}
      VITE_DEV_USER_EMAIL: ${SEAMLESS_DEV_USER_EMAIL:-dev@localhost}
      VITE_FIREBASE_API_KEY: ${VITE_FIREBASE_API_KEY:-}
      VITE_FIREBASE_AUTH_DOMAIN: ${VITE_FIREBASE_AUTH_DOMAIN:-}
      VITE_FIREBASE_PROJECT_ID: ${VITE_FIREBASE_PROJECT_ID:-}
      VITE_FIREBASE_STORAGE_BUCKET: ${VITE_FIREBASE_STORAGE_BUCKET:-}
      VITE_FIREBASE_MESSAGING_SENDER_ID: ${VITE_FIREBASE_MESSAGING_SENDER_ID:-}
      VITE_FIREBASE_APP_ID: ${VITE_FIREBASE_APP_ID:-}
      VITE_FIREBASE_MEASUREMENT_ID: ${VITE_FIREBASE_MEASUREMENT_ID:-}
    volumes:
      - ./vite-project/src:/app/src
      - ./vite-project/public:/app/public
      - ./vite-project/index.html:/app/index.html:ro
      - ./vite-project/vite.config.ts:/app/vite.config.ts:ro
      - ./vite-project/tailwind.config.js:/app/tailwind.config.js:ro
      - ./vite-project/postcss.config.js:/app/postcss.config.js:ro
      - /app/node_modules
    ports:
      - "${FRONTEND_PORT:-3000}:3000"
    depends_on:
      - service
    restart: unless-stopped

volumes:
  uploads:
  r-libs: