{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "ename": "ImportError",
     "evalue": "cannot import name 'DeterministicOde'",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mImportError\u001b[0m                               Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-3-f881d4cbb78f>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[0;32mfrom\u001b[0m \u001b[0mpygom\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mTransitionType\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mTransition\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0;32mfrom\u001b[0m \u001b[0mpygom\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mDeterministicOde\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
      "\u001b[0;31mImportError\u001b[0m: cannot import name 'DeterministicOde'"
     ]
    }
   ],
   "source": [
    "from pygom import TransitionType, Transition\n",
    "from pygom import DeterministicOde"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "state = ['S', 'I', 'R']\n",
    "param_list = ['beta', 'gamma']\n",
    "transition = [\n",
    "    Transition(origState='S', destState='I', equation='beta*S*I',\n",
    "               transitionType=TransitionType.T),\n",
    "    Transition(origState='I', destState='R', equation='gamma*I',\n",
    "               transitionType=TransitionType.T)\n",
    "    ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "transition"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# initialize the model\n",
    "ode_obj = DeterministicOdeModel(state, param_list, transition=transition)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "ename": "NameError",
     "evalue": "name 'pygom' is not defined",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mNameError\u001b[0m                                 Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-4-c2a74f2910ea>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mhelp\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpygom\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
      "\u001b[0;31mNameError\u001b[0m: name 'pygom' is not defined"
     ]
    }
   ],
   "source": [
    "help(pygom)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "    # initialize the model\n",
    "    ode = DeterministicOde(state,\n",
    "                           param_list,\n",
    "                           transition=transition)"
   ]
  }
 ],
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