##fileformat=VCFv4.2
##fileDate=20150729
##source=SNV-Unifier
##reference=file:///home/dnanexus/genome.fa
##phasing=none
##PEDIGREE=<Derived=NA12882,Original=NA12878>
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic event">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
##INFO=<ID=SPLITMULTIALLELIC,Number=0,Type=Flag,Description="Variant represents one alternate allele from a multiallelic variant call.">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=VT,Number=1,Type=String,Description="Variant type, can be SNP, MNP, INS or DEL">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
##INFO=<ID=PF,Number=1,Type=Integer,Description="The number of samples carry the variant">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical micro-homology at event breakpoints">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=NTLEN,Number=.,Type=Integer,Description="Number of bases inserted in place of deleted code">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=SF,Number=.,Type=String,Description="Source File (index to sourceFiles, f when filtered)">
##INFO=<ID=ADERROR,Number=0,Type=Flag,Description="The AD field from the original variant caller VCF has an error at this locus. Please use caution when interpreting AD, GMIMAF, and GMICOV.">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=BQ,Number=A,Type=Float,Description="Average base quality for reads supporting alleles">
##FORMAT=<ID=FA,Number=A,Type=Float,Description="Allele fraction of the alternate allele with regard to reference">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=SS,Number=1,Type=Integer,Description="Variant status relative to non-adjacent Normal,0=wildtype,1=germline,2=somatic,3=LOH,4=post-transcriptional modification,5=unknown">
##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Reference depth, how many reads support the reference">
##FORMAT=<ID=GMIMUT,Number=A,Type=Integer,Description="GMI-derived mutant read count: the number of reads observed at the variant locus that support each ALT allele.">
##FORMAT=<ID=GMIMAF,Number=A,Type=Integer,Description="GMI-derived MAF: the proportion of reads observed at the variant locus that support each ALT allele.">
##FORMAT=<ID=GMICOV,Number=1,Type=Integer,Description="GMI-derived coverage: total read depth at the variant locus.">
##FORMAT=<ID=AD,Number=2,Type=Integer,Description="# of reads supporting consensus reference/indel at the site">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Total coverage at the site">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MM,Number=2,Type=Float,Description="Average # of mismatches per ref-/consensus indel-supporting read">
##FORMAT=<ID=MQS,Number=2,Type=Float,Description="Average mapping qualities of ref-/consensus indel-supporting reads">
##FORMAT=<ID=NQSBQ,Number=2,Type=Float,Description="Within NQS window: average quality of bases in ref-/consensus indel-supporting reads">
##FORMAT=<ID=NQSMM,Number=2,Type=Float,Description="Within NQS window: fraction of mismatching bases in ref/consensus indel-supporting reads">
##FORMAT=<ID=REnd,Number=2,Type=Integer,Description="Median/mad of indel offsets from the ends of the reads">
##FORMAT=<ID=RStart,Number=2,Type=Integer,Description="Median/mad of indel offsets from the starts of the reads">
##FORMAT=<ID=SC,Number=4,Type=Integer,Description="Strandness: counts of forward-/reverse-aligned reference and indel-supporting reads (FwdRef,RevRef,FwdIndel,RevIndel)">
##FORMAT=<ID=CallHC,Number=1,Type=Integer,Description="Variant was called by HaplotypeCaller">
##FORMAT=<ID=CallUG,Number=1,Type=Integer,Description="Variant was called by UnifiedGenotyper">
##FORMAT=<ID=CallFB,Number=1,Type=Integer,Description="Variant was called by freeBayes">
##FORMAT=<ID=CallPI,Number=1,Type=Integer,Description="Variant was called by pindel">
##FORMAT=<ID=CallSID,Number=1,Type=Integer,Description="Variant was called by SomaticIndelDetector">
##FORMAT=<ID=CallMU,Number=1,Type=Integer,Description="Variant was called by MuTect">
##FORMAT=<ID=LR,Number=1,Type=Float,Description="CNV log2 ratio">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=REJECT,Description="Not somatic due to normal call frequency or phred likelihoods: tumor: 35, normal 35.">
##contig=<ID=chrM,length=16571>
##contig=<ID=chr1,length=249250621>
##contig=<ID=chr2,length=243199373>
##contig=<ID=chr3,length=198022430>
##contig=<ID=chr4,length=191154276>
##contig=<ID=chr5,length=180915260>
##contig=<ID=chr6,length=171115067>
##contig=<ID=chr7,length=159138663>
##contig=<ID=chr8,length=146364022>
##contig=<ID=chr9,length=141213431>
##contig=<ID=chr10,length=135534747>
##contig=<ID=chr11,length=135006516>
##contig=<ID=chr12,length=133851895>
##contig=<ID=chr13,length=115169878>
##contig=<ID=chr14,length=107349540>
##contig=<ID=chr15,length=102531392>
##contig=<ID=chr16,length=90354753>
##contig=<ID=chr17,length=81195210>
##contig=<ID=chr18,length=78077248>
##contig=<ID=chr19,length=59128983>
##contig=<ID=chr20,length=63025520>
##contig=<ID=chr21,length=48129895>
##contig=<ID=chr22,length=51304566>
##contig=<ID=chrX,length=155270560>
##contig=<ID=chrY,length=59373566>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878	NA12882
chr1	1509034	.	T	C	6099.105	REJECT	NS=2;DP=359;DPB=409.0;AC=2;AN=4;AF=0.5;RO=195;AO=213;PRO=0.0;PAO=0.0;QR=7425;QA=8141;PQR=0.0;PQA=0.0;SRF=103;SRR=92;SAF=102;SAR=111;SRP=4.35773;SAP=3.83607;AB=0.520782;ABP=4.54467;RUN=1;RPP=5.95657;RPPR=18.2551;RPL=98.0;RPR=115.0;EPP=3.02049;EPPR=3.02144;DPRA=0.0;ODDS=311.107;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.974359;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.194;Dels=0.0;FS=3.564;HaplotypeScore=4.8904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0435;QD=18.64;ReadPosRankSum=0.612;SOR=0.866;ClippingRankSum=1.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.105:95:47:1800:51:1915:-145.826,0.0,-135.477:50:52:95:44,49:1712,0,1614:1:.:1:.:.:.:-9.82249e-05	0/1:118.105:310:148:5625:162:6226:-476.084,0.0,-421.954:162:52:309:146,162:6072,0,5212:.:1:1:.:.:.:-0.0436845
chr1	2488153	.	A	G	1206.87	REJECT	NS=1;DP=109;DPB=109.0;AC=1;AN=4;AF=0.5;RO=64;AO=45;PRO=0.0;PAO=0.0;QR=2394;QA=1733;PQR=0.0;PQA=0.0;SRF=33;SRR=31;SAF=19;SAR=26;SRP=3.14602;SAP=5.37479;AB=0.412844;ABP=10.2021;RUN=1;RPP=6.91895;RPPR=4.23175;RPL=27.0;RPR=18.0;EPP=6.91895;EPPR=7.89611;DPRA=0.0;ODDS=277.893;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.779;FS=3.623;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.567;QD=13.22;ReadPosRankSum=-0.067;SOR=0.945;ClippingRankSum=1.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.093:107:64:2394:45:1733:-126.47,0.0,-185.937:44:41:107:62,44:1430,0,2097:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0436845
chr1	2490898	.	C	A	12580.15	REJECT	NS=2;DP=490;DPB=576.0;AC=2;AN=4;AF=0.5;RO=144;AO=431;PRO=0.0;PAO=0.0;QR=5479;QA=15823;PQR=0.0;PQA=0.0;SRF=73;SRR=71;SAF=222;SAR=209;SRP=3.07062;SAP=3.86176;AB=0.748264;ABP=311.374;RUN=1;RPP=3.13626;RPPR=3.55317;RPL=218.0;RPR=213.0;EPP=3.86176;EPPR=3.0103;DPRA=0.0;ODDS=274.749;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993039;PAIREDR=0.993056;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.5685;Dels=0.0;FS=0.0;HaplotypeScore=4.9413;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6325;QD=24.915;ReadPosRankSum=0.696;SOR=0.686;ClippingRankSum=-0.074	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1205:170:76:2929:94:3381:-258.191,0.0,-217.524:93:55:169:76,93:3199,0,2773:1:.:1:.:.:.:-9.82249e-05	0/1:118.1205:404:68:2550:337:12442:-1009.49,0.0,-119.769:336:83:404:68,336:12579,0,1666:.:1:1:.:.:.:-0.0436845
chr1	2490942	.	C	A	13104.5	REJECT	NS=2;DP=486;DPB=568.0;AC=2;AN=4;AF=0.5;RO=135;AO=432;PRO=0.0;PAO=0.0;QR=5178;QA=16351;PQR=0.0;PQA=0.0;SRF=64;SRR=71;SAF=231;SAR=201;SRP=3.79846;SAP=7.5342;AB=0.760563;ABP=337.968;RUN=1;RPP=3.73412;RPPR=3.15506;RPL=210.0;RPR=222.0;EPP=3.03041;EPPR=13.0634;DPRA=0.0;ODDS=224.368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997685;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8075;Dels=0.0;FS=3.166;HaplotypeScore=11.8168;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.277;QD=25.765;ReadPosRankSum=-0.687;SOR=0.6875;ClippingRankSum=1.234	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:160:75:2867:87:3280:-251.233,0.0,-214.099:85:54:159:73,84:2967,0,2595:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:405:60:2311:345:13071:-1066.29,0.0,-98.2283:345:85:405:60,345:13315,0,1408:.:1:1:.:.:.:-0.0436845
chr1	2491205	.	C	T	10791.4	REJECT	NS=2;DP=389;DPB=444.0;AC=2;AN=4;AF=0.5;RO=92;AO=351;PRO=0.0;PAO=0.0;QR=3544;QA=13430;PQR=0.0;PQA=0.0;SRF=37;SRR=55;SAF=144;SAR=207;SRP=10.6577;SAP=27.5646;AB=0.790541;ABP=328.555;RUN=1;RPP=3.01649;RPPR=9.05266;RPL=175.0;RPR=176.0;EPP=3.31344;EPPR=3.86001;DPRA=0.0;ODDS=140.684;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5655;Dels=0.0;FS=3.197;HaplotypeScore=5.8982;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.51;QD=26.88;ReadPosRankSum=-0.2485;SOR=0.73;ClippingRankSum=-2.32	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:48:1844:60:2269:-174.952,0.0,-136.712:59:55:107:48,58:2106,0,1745:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:335:44:1700:291:11161:-913.09,0.0,-62.2002:291:87:335:44,291:11473,0,917:.:1:1:.:.:.:-0.0436845
chr1	2494330	.	G	A	6263.125	REJECT	NS=2;DP=369;DPB=432.0;AC=2;AN=4;AF=0.5;RO=202;AO=230;PRO=0.0;PAO=0.0;QR=7533;QA=8661;PQR=0.0;PQA=0.0;SRF=95;SRR=107;SAF=125;SAR=105;SRP=4.55828;SAP=6.78677;AB=0.532407;ABP=6.95112;RUN=1;RPP=3.61454;RPPR=4.55828;RPL=119.0;RPR=111.0;EPP=4.86077;EPPR=6.49326;DPRA=0.0;ODDS=349.62;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995652;PAIREDR=0.99505;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3445;Dels=0.0;FS=4.588;HaplotypeScore=7.9187;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.159;QD=18.49;ReadPosRankSum=1.0695;SOR=0.7285;ClippingRankSum=1.248	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:57:2068:68:2497:-190.884,0.0,-152.283:65:53:122:56,63:2151,0,1853:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:307:145:5465:162:6164:-471.724,0.0,-408.426:162:53:307:145,162:5996,0,5186:.:1:1:.:.:.:-0.0436845
chr1	3003532	.	G	A	1226.88	REJECT	NS=2;DP=257;DPB=295.0;AC=2;AN=4;AF=0.5;RO=230;AO=64;PRO=0.0;PAO=0.0;QR=8646;QA=2452;PQR=0.0;PQA=0.0;SRF=60;SRR=170;SAF=17;SAR=47;SRP=117.249;SAP=33.5466;AB=0.216949;ABP=208.299;RUN=1;RPP=37.7539;RPPR=97.4221;RPL=48.0;RPR=16.0;EPP=3.14602;EPPR=3.61454;DPRA=0.0;ODDS=90.5404;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.637;Dels=0.0;FS=4.497;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.333;QD=9.58;ReadPosRankSum=-0.0815;SOR=0.4305;ClippingRankSum=-0.443	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.1365:73:39:1441:35:1315:-98.3834,0.0,-109.704:34:47:72:37,34:1191,0,1245:1:.:1:.:.:.:-9.82249e-05	0/1:122.1365:219:191:7205:29:1137:-42.7359,0.0,-588.576:29:13:219:190,29:637,0,7294:.:1:1:.:.:.:-0.0436845
chr1	6184092	.	A	G	8794.785	REJECT	NS=2;DP=369;DPB=428.0;AC=3;AN=4;AF=0.75;RO=106;AO=321;PRO=0.0;PAO=0.0;QR=4013;QA=12209;PQR=0.0;PQA=0.0;SRF=54;SRR=52;SAF=190;SAR=131;SRP=3.09224;SAP=26.5583;AB=0.655949;ABP=68.7061;RUN=1;RPP=8.69942;RPPR=19.071;RPL=146.0;RPR=175.0;EPP=51.8853;EPPR=3.33807;DPRA=0.0;ODDS=74.0173;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993769;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.424;Dels=0.0;FS=4.661;HaplotypeScore=8.7752;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.457;QD=28.49;ReadPosRankSum=-0.382;SOR=1.0645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:117:4500:-405.013,-31.7193,0.0:116:100:116:0,115:4810,346,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:310:106:4013:204:7709:-609.456,0.0,-277.43:203:66:309:106,203:7611,0,3578:.:1:1:.:.:.:-0.0436845
chr1	6188546	.	G	A	7068.445	REJECT	NS=2;DP=295;DPB=333.0;AC=3;AN=4;AF=0.75;RO=86;AO=247;PRO=0.0;PAO=0.0;QR=3281;QA=9413;PQR=0.0;PQA=0.0;SRF=49;SRR=37;SAF=129;SAR=118;SRP=6.64625;SAP=4.07406;AB=0.667954;ABP=66.4693;RUN=1;RPP=31.5735;RPPR=17.5541;RPL=95.0;RPR=152.0;EPP=3.23008;EPPR=7.95924;DPRA=0.0;ODDS=46.2835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.996;MQMR=60.0;PAIRED=0.979757;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.342;Dels=0.0;FS=1.47;HaplotypeScore=3.9632;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.671;QD=27.28;ReadPosRankSum=-1.221;SOR=0.7295	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:72:0:0:74:2823:-253.815,-19.6747,0.0:72:100:72:0,70:2910,210,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:258:86:3281:173:6590:-522.655,0.0,-225.003:172:67:258:86,171:6488,0,2896:.:1:1:.:.:.:-0.0436845
chr1	6196869	.	A	G	7434.14	REJECT	NS=2;DP=351;DPB=396.0;AC=3;AN=4;AF=0.75;RO=129;AO=267;PRO=0.0;PAO=0.0;QR=4946;QA=10255;PQR=0.0;PQA=0.0;SRF=52;SRR=77;SAF=82;SAR=185;SRP=13.531;SAP=89.2918;AB=0.578431;ABP=19.3602;RUN=1;RPP=3.99438;RPPR=3.02713;RPL=139.0;RPR=128.0;EPP=3.0835;EPPR=3.83512;DPRA=0.0;ODDS=57.161;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.748;Dels=0.0;FS=3.6515;HaplotypeScore=5.8877;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.376;QD=24.725;ReadPosRankSum=-0.833;SOR=1.585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:90:3489:-314.089,-24.3987,0.0:90:100:90:0,90:3866,270,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:306:129:4946:177:6766:-525.699,0.0,-362.008:177:58:306:129,177:6646,0,4615:.:1:1:.:.:.:-0.0436845
chr1	6204222	.	C	G	4741.3	REJECT	NS=2;DP=303;DPB=351.0;AC=2;AN=4;AF=0.5;RO=176;AO=175;PRO=0.0;PAO=0.0;QR=6612;QA=6717;PQR=0.0;PQA=0.0;SRF=68;SRR=108;SAF=47;SAR=128;SRP=22.751;SAP=84.4219;AB=0.498575;ABP=3.01649;RUN=1;RPP=25.9535;RPPR=31.4368;RPL=109.0;RPR=66.0;EPP=7.48974;EPPR=3.0103;DPRA=0.0;ODDS=258.439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994318;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.815;Dels=0.0;FS=8.911;HaplotypeScore=3.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4385;QD=18.37;ReadPosRankSum=0.615;SOR=1.2795;ClippingRankSum=0.359	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:43:1563:51:1947:-149.807,0.0,-115.241:51:54:93:42,51:1788,0,1400:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:256:133:5049:124:4770:-359.496,0.0,-384.554:124:48:256:132,124:4589,0,4789:.:1:1:.:.:.:-0.0436845
chr1	6209363	.	T	C	9234.93	REJECT	NS=2;DP=377;DPB=419.0;AC=3;AN=4;AF=0.75;RO=109;AO=310;PRO=0.0;PAO=0.0;QR=4119;QA=11931;PQR=0.0;PQA=0.0;SRF=58;SRR=51;SAF=184;SAR=126;SRP=3.98647;SAP=26.5743;AB=0.674627;ABP=91.7425;RUN=1;RPP=6.4006;RPPR=3.1896;RPL=144.0;RPR=166.0;EPP=4.38323;EPPR=3.1896;DPRA=0.0;ODDS=53.3886;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993548;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.984;Dels=0.0;FS=2.2945;HaplotypeScore=8.7233;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.492;QD=25.65;ReadPosRankSum=-2.332;SOR=1.063	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:84:3224:-290.245,-22.7604,0.0:83:100:83:0,83:3556,249,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:335:109:4119:226:8707:-692.409,0.0,-279.768:226:67:335:109,226:8759,0,3602:.:1:1:.:.:.:-0.0436845
chr1	6211183	.	G	A	3775.1	REJECT	NS=1;DP=110;DPB=110.0;AC=2;AN=4;AF=1.0;RO=0;AO=110;PRO=0.0;PAO=0.0;QR=0;QA=4241;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=63;SAR=47;SRP=0.0;SAP=8.06391;AB=0.0;ABP=0.0;RUN=1;RPP=4.98437;RPPR=0.0;RPL=60.0;RPR=50.0;EPP=4.2737;EPPR=0.0;DPRA=0.0;ODDS=73.2308;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.71;SOR=0.981	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.064:109:0:0:110:4241:-381.693,-29.8037,0.0:109:100:109:0,108:4483,324,0:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0436845
chr1	6215736	.	C	G	5292.530000000001	REJECT	NS=2;DP=361;DPB=420.0;AC=2;AN=4;AF=0.5;RO=223;AO=197;PRO=0.0;PAO=0.0;QR=8644;QA=7494;PQR=0.0;PQA=0.0;SRF=99;SRR=124;SAF=86;SAR=111;SRP=9.09627;SAP=9.89949;AB=0.469048;ABP=6.50534;RUN=1;RPP=16.5131;RPPR=17.8211;RPL=116.0;RPR=81.0;EPP=7.87131;EPPR=10.109;DPRA=0.0;ODDS=362.219;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994924;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6875;Dels=0.0;FS=0.0;HaplotypeScore=6.946;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1365;QD=16.47;ReadPosRankSum=-0.614;SOR=0.7045;ClippingRankSum=-0.992	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:61:2337:56:2113:-158.464,0.0,-178.636:56:48:116:60,56:1910,0,2018:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:303:162:6307:141:5381:-401.926,0.0,-485.211:141:47:303:162,141:5095,0,6160:.:1:1:.:.:.:-0.0436845
chr1	10517944	.	CTG	C	11053.3	REJECT	NS=2;DP=322;DPB=291.444;AC=4;AN=4;AF=1.0;RO=0;AO=341;PRO=27.0;PAO=27.0;QR=0;QA=12498;PQR=928.0;PQA=928.0;SRF=0;SRR=0;SAF=117;SAR=224;SRP=0.0;SAP=75.917;AB=0.0;ABP=0.0;RUN=1;RPP=40.7659;RPPR=0.0;RPL=209.0;RPR=132.0;EPP=40.7659;EPPR=0.0;DPRA=0.0;ODDS=51.0483;GTI=0;TYPE=del;CIGAR=1M2D6M;NUMALT=1;MEANALT=2.5;LEN=2;MQM=60.4399;MQMR=0.0;PAIRED=0.991202;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=10517946;HOMLEN=5;HOMSEQ=TGTGT;SVLEN=-2;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.415;QD=28.27;RPA=3,2;RU=TG;SOR=1.737;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.5425:75:0:0:75:2742:-246.87,-20.2949,0.0:76:100:76:10,77:3217,229,0:1:.:1:1:.:.:-9.82249e-05	1/1:122.5425:285:0:0:266:9756:-877.537,-71.9342,0.0:266:100:266:50,286:12589,801,0:.:1:1:1:.:.:-0.0436845
chr1	11187893	.	T	C	6178.69	REJECT	NS=2;DP=167;DPB=188.0;AC=4;AN=4;AF=1.0;RO=0;AO=188;PRO=0.0;PAO=0.0;QR=0;QA=7132;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=53;SAR=135;SRP=0.0;SAP=80.6751;AB=0.0;ABP=0.0;RUN=1;RPP=105.07;RPPR=0.0;RPL=141.0;RPR=47.0;EPP=21.4909;EPPR=0.0;DPRA=0.0;ODDS=30.5445;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994681;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.845;SOR=2.2785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:115.646:41:0:0:42:1579:-142.342,-11.3902,0.0:41:100:41:0,41:1712,123,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:146:0:0:146:5553:-499.693,-39.5634,0.0:146:100:146:0,146:6229,436,0:.:1:1:.:.:.:-0.0436845
chr1	11205058	.	C	T	13009.65	REJECT	NS=2;DP=343;DPB=392.0;AC=4;AN=4;AF=1.0;RO=0;AO=392;PRO=0.0;PAO=0.0;QR=0;QA=14960;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=170;SAR=222;SRP=0.0;SAP=17.989;AB=0.0;ABP=0.0;RUN=1;RPP=9.41393;RPPR=0.0;RPL=213.0;RPR=179.0;EPP=4.80509;EPPR=0.0;DPRA=0.0;ODDS=64.1696;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997449;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.73;SOR=1.03	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.8825:95:0:0:96:3629:-326.65,-25.9935,0.0:95:100:95:0,94:3612,281,0:1:.:1:.:.:.:-9.82249e-05	1/1:125.8825:295:0:0:296:11331:-1019.2,-80.1652,0.0:295:100:295:0,295:12654,879,0:.:1:1:.:.:.:-0.0436845
chr1	11288758	.	G	A	14033.75	REJECT	NS=2;DP=371;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=16129;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=245;SAR=176;SRP=0.0;SAP=27.567;AB=0.0;ABP=0.0;RUN=1;RPP=7.96703;RPPR=0.0;RPL=226.0;RPR=195.0;EPP=7.96703;EPPR=0.0;DPRA=0.0;ODDS=67.3574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9242;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.08;SOR=0.972	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3902:-351.225,-27.3779,0.0:100:100:100:0,100:4179,300,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:320:0:0:320:12227:-1099.73,-86.6398,0.0:320:100:320:0,320:13663,948,0:.:1:1:.:.:.:-0.0436845
chr1	11301714	.	A	G	3852.53	REJECT	NS=1;DP=117;DPB=117.0;AC=2;AN=4;AF=1.0;RO=0;AO=117;PRO=0.0;PAO=0.0;QR=0;QA=4348;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=51;SAR=66;SRP=0.0;SAP=7.18621;AB=0.0;ABP=0.0;RUN=1;RPP=11.1951;RPPR=0.0;RPL=48.0;RPR=69.0;EPP=16.5402;EPPR=0.0;DPRA=0.0;ODDS=77.4166;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.974359;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.3;SOR=0.965	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:117:4348:-391.237,-31.6216,0.0:115:100:115:0,114:4686,341,0:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0436845
chr1	15011554	.	T	A	4435.860000000001	REJECT	NS=2;DP=352;DPB=402.0;AC=2;AN=4;AF=0.5;RO=234;AO=168;PRO=0.0;PAO=0.0;QR=8926;QA=6364;PQR=0.0;PQA=0.0;SRF=90;SRR=144;SAF=57;SAR=111;SRP=30.0702;SAP=40.7009;AB=0.41791;ABP=26.54;RUN=1;RPP=17.9521;RPPR=9.28344;RPL=101.0;RPR=67.0;EPP=3.0103;EPPR=13.7377;DPRA=0.0;ODDS=272.212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9573;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5315;Dels=0.0;FS=3.3715;HaplotypeScore=6.7908;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=1.3135;QD=13.895;ReadPosRankSum=-0.722;SOR=1.0425;ClippingRankSum=-1.529	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8615:98:54:2058:45:1636:-120.43,0.0,-158.466:44:44:98:54,43:1332,0,1945:1:.:1:.:.:.:-9.82249e-05	0/1:119.8615:303:180:6868:123:4728:-343.208,0.0,-535.694:123:41:303:180,123:4376,0,6767:.:1:1:.:.:.:-0.0436845
chr1	15011576	.	T	C	3910.3050000000003	REJECT	NS=2;DP=306;DPB=352.0;AC=2;AN=4;AF=0.5;RO=204;AO=148;PRO=0.0;PAO=0.0;QR=7818;QA=5591;PQR=0.0;PQA=0.0;SRF=62;SRR=142;SAF=38;SAR=110;SRP=71.1349;SAP=79.0705;AB=0.420455;ABP=22.3561;RUN=1;RPP=12.9286;RPPR=49.3776;RPL=87.0;RPR=61.0;EPP=5.88603;EPPR=5.09662;DPRA=0.0;ODDS=235.289;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.679;Dels=0.0;FS=3.0685;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4275;QD=13.85;ReadPosRankSum=-0.2955;SOR=1.0645;ClippingRankSum=-0.67	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.32:90:52:1979:39:1432:-104.261,0.0,-153.507:38:42:90:52,37:1166,0,1882:1:.:1:.:.:.:-9.82249e-05	0/1:120.32:261:152:5839:109:4159:-303.433,0.0,-454.528:109:42:261:152,109:3922,0,5744:.:1:1:.:.:.:-0.0436845
chr1	16256007	.	T	C	8609.73	REJECT	NS=2;DP=360;DPB=413.0;AC=3;AN=4;AF=0.75;RO=109;AO=304;PRO=0.0;PAO=0.0;QR=4182;QA=11651;PQR=0.0;PQA=0.0;SRF=61;SRR=48;SAF=148;SAR=156;SRP=6.37708;SAP=3.46745;AB=0.648387;ABP=62.2985;RUN=1;RPP=5.32463;RPPR=3.03022;RPL=161.0;RPR=143.0;EPP=3.03887;EPPR=6.37708;DPRA=0.0;ODDS=64.3457;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990132;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.826;Dels=0.0;FS=4.579;HaplotypeScore=1.9575;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.276;QD=24.29;ReadPosRankSum=-0.296;SOR=0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:103:3917:-352.165,-27.519,0.0:101:100:101:0,100:4090,300,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:309:109:4182:201:7734:-611.678,0.0,-292.175:200:65:309:109,199:7671,0,3743:.:1:1:.:.:.:-0.0436845
chr1	16259813	.	A	G	8696.535	REJECT	NS=2;DP=374;DPB=427.0;AC=3;AN=4;AF=0.75;RO=114;AO=313;PRO=0.0;PAO=0.0;QR=4320;QA=11769;PQR=0.0;PQA=0.0;SRF=66;SRR=48;SAF=173;SAR=140;SRP=9.18185;SAP=10.5654;AB=0.648148;ABP=64.7766;RUN=1;RPP=3.18374;RPPR=7.88659;RPL=154.0;RPR=159.0;EPP=42.0344;EPPR=5.75321;DPRA=0.0;ODDS=65.1196;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98722;PAIREDR=0.991228;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.043;Dels=0.0;FS=3.087;HaplotypeScore=6.896;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.866;QD=25.095;ReadPosRankSum=-0.347;SOR=0.967	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:103:3819:-343.702,-27.8551,0.0:100:100:100:0,98:3902,292,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:322:114:4320:210:7950:-627.342,0.0,-300.857:209:65:322:113,208:7817,0,3838:.:1:1:.:.:.:-0.0436845
chr1	16265403	.	A	G	1581.665	REJECT	NS=2;DP=256;DPB=291.0;AC=2;AN=4;AF=0.5;RO=215;AO=76;PRO=0.0;PAO=0.0;QR=7978;QA=2875;PQR=0.0;PQA=0.0;SRF=93;SRR=122;SAF=32;SAR=44;SRP=11.5043;SAP=7.12467;AB=0.261168;ABP=147.186;RUN=1;RPP=40.0396;RPPR=165.911;RPL=56.0;RPR=20.0;EPP=7.12467;EPPR=3.82839;DPRA=0.0;ODDS=134.912;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.487;Dels=0.0;FS=3.1615;HaplotypeScore=7.7763;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2365;QD=12.65;ReadPosRankSum=0.111;SOR=0.8525;ClippingRankSum=-0.94	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:28:1052:41:1524:-118.553,0.0,-76.0498:41:59:68:27,41:1492,0,960:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:222:187:6926:35:1351:-61.4399,0.0,-562.971:35:16:222:187,35:865,0,7063:.:1:1:.:.:.:-0.0436845
chr1	16265904	.	T	A	4871.72	REJECT	NS=2;DP=333;DPB=381.0;AC=2;AN=4;AF=0.5;RO=202;AO=178;PRO=0.0;PAO=0.0;QR=7682;QA=6906;PQR=0.0;PQA=0.0;SRF=85;SRR=117;SAF=62;SAR=116;SRP=14.0182;SAP=38.5834;AB=0.467192;ABP=6.57243;RUN=1;RPP=3.20549;RPPR=23.822;RPL=91.0;RPR=87.0;EPP=12.5745;EPPR=3.3973;DPRA=0.0;ODDS=299.303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.455;Dels=0.0;FS=5.113;HaplotypeScore=5.8044;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.538;QD=17.56;ReadPosRankSum=0.294;SOR=1.059;ClippingRankSum=-0.55	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:44:1728:52:1986:-152.746,0.0,-129.513:52:54:95:43,52:1828,0,1524:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:285:158:5954:126:4920:-365.661,0.0,-458.616:126:44:284:158,126:4693,0,5734:.:1:1:.:.:.:-0.0436845
chr1	16464673	.	G	A	1752.85	REJECT	NS=2;DP=309;DPB=357.0;AC=2;AN=4;AF=0.5;RO=273;AO=84;PRO=0.0;PAO=0.0;QR=10179;QA=3237;PQR=0.0;PQA=0.0;SRF=123;SRR=150;SAF=39;SAR=45;SRP=8.80885;SAP=3.94093;AB=0.235294;ABP=220.285;RUN=1;RPP=5.59539;RPPR=10.6542;RPL=47.0;RPR=37.0;EPP=4.66476;EPPR=5.30904;DPRA=0.0;ODDS=135.082;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996337;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.01;Dels=0.0;FS=4.672;HaplotypeScore=8.862;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1375;QD=10.285;ReadPosRankSum=-0.519;SOR=0.8655;ClippingRankSum=-0.98	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:48:1772:47:1790:-135.417,0.0,-133.769:46:49:94:47,46:1647,0,1596:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:262:225:8407:37:1447:-59.2742,0.0,-685.279:37:14:262:225,37:856,0,8580:.:1:1:.:.:.:-0.0436845
chr1	16475123	.	C	T	1198.77	PASS	DP=184;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.386;Dels=0.0;FS=6.7905;HaplotypeScore=6.8559;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2205;QD=10.975;ReadPosRankSum=-1.4175;SOR=0.98;ClippingRankSum=1.18	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:46,47:93:99.0:1888,0,2734:47:51:93:1:.:.:.:.:.:-9.82249e-05	0/1:244,32:276:99.0:566,0,9520:32:12:276:.:1:.:.:.:.:-0.0436845
chr1	16475123	.	CAGC	TAGT	1801.06	REJECT	NS=2;DP=361;DPB=375.25;AC=2;AN=4;AF=0.5;RO=285;AO=74;PRO=15.0;PAO=9.0;QR=10789;QA=2731;PQR=452.0;PQA=330.0;SRF=153;SRR=132;SAF=43;SAR=31;SRP=6.37037;SAP=7.23587;AB=0.204986;ABP=275.912;RUN=1;RPP=3.12768;RPPR=7.04086;RPL=38.0;RPR=36.0;EPP=4.88833;EPPR=3.07887;DPRA=0.0;ODDS=118.384;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=2.0;LEN=4;MQM=59.7297;MQMR=60.0;PAIRED=0.986486;PAIREDR=0.992982;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:140.201:91:44:1668:46:1666:-134.499,0.0,-130.998:46:51:90:.:.:1:.:.:.:-9.82249e-05	0/1:140.201:270:241:9121:28:1065:-51.626,0.0,-776.588:28:10:269:.:.:1:.:.:.:-0.0436845
chr1	16475126	.	C	T	1149.77	PASS	DP=186;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.459;Dels=0.0;FS=5.4905;HaplotypeScore=7.7891;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0435;QD=10.89;ReadPosRankSum=-1.063;SOR=0.836;ClippingRankSum=0.395	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:44,48:92:99.0:1888,0,2734:48:52:92:1:.:.:.:.:.:-9.82249e-05	0/1:250,30:281:99.0:468,0,9792:30:11:280:.:1:.:.:.:.:-0.0436845
chr1	17380497	.	G	T	3018.26	REJECT	NS=1;DP=89;DPB=89.0;AC=2;AN=4;AF=1.0;RO=0;AO=89;PRO=0.0;PAO=0.0;QR=0;QA=3424;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=36;SAR=53;SRP=0.0;SAP=10.0615;AB=0.0;ABP=0.0;RUN=1;RPP=20.7969;RPPR=0.0;RPL=58.0;RPR=31.0;EPP=10.0615;EPPR=0.0;DPRA=0.0;ODDS=60.1447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.31;SOR=1.116	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.729:88:0:0:89:3424:-308.237,-24.1205,0.0:88:100:88:0,88:3503,264,0:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0436845
chr1	19027239	.	A	G	1900.915	REJECT	NS=2;DP=391;DPB=449.0;AC=2;AN=4;AF=0.5;RO=347;AO=100;PRO=0.0;PAO=0.0;QR=13115;QA=3770;PQR=0.0;PQA=0.0;SRF=229;SRR=118;SAF=66;SAR=34;SRP=80.1132;SAP=25.2462;AB=0.222717;ABP=302.862;RUN=1;RPP=3.09716;RPPR=5.26938;RPL=51.0;RPR=49.0;EPP=13.5202;EPPR=10.6762;DPRA=0.0;ODDS=158.932;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0445;Dels=0.0;FS=3.8185;HaplotypeScore=5.8783;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.747;QD=9.115;ReadPosRankSum=0.855;SOR=0.76;ClippingRankSum=-0.281	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:63:2408:52:1973:-146.427,0.0,-185.55:51:45:113:60,51:1737,0,2148:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:333:284:10707:48:1797:-71.7757,0.0,-873.16:47:14:331:284,47:973,0,10951:.:1:1:.:.:.:-0.0436845
chr1	22405378	.	AC	A	623.333	REJECT	NS=2;DP=76;DPB=121.548;AC=2;AN=2;AF=0.0;RO=5;AO=5;PRO=41.4167;PAO=2.25;QR=179;QA=70;PQR=1471.33;PQA=77.0;SRF=2;SRR=3;SAF=0;SAR=5;SRP=3.44459;SAP=13.8677;AB=0.0657895;ABP=127.47;RUN=1;RPP=6.91895;RPPR=3.44459;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=6.91895;DPRA=0.0;ODDS=20.7783;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=5;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.2146:23:1:35:2:28:-22.8854,-39.0827,-227.93:2:13:15:.:.:1:.:.:.:-9.82249e-05	./1:143.445:53:4:144:3:42:-45.4286,-89.625,-604.5:3:9:34:.:.:1:.:.:.:-0.0436845
chr1	22405378	.	AC	TT	623.333	REJECT	NS=2;DP=76;DPB=121.548;AC=2;AN=2;AF=0.0;RO=5;AO=3;PRO=41.4167;PAO=0.0;QR=179;QA=30;PQR=1471.33;PQA=0.0;SRF=2;SRR=3;SAF=0;SAR=3;SRP=3.44459;SAP=9.52472;AB=0.0394737;ABP=143.013;RUN=1;RPP=3.73412;RPPR=3.44459;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=6.91895;DPRA=0.0;ODDS=20.7783;GTI=0;TYPE=mnp;CIGAR=2X29M;NUMALT=5;MEANALT=17.0;LEN=2;MQM=59.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.2146:23:1:35:2:16:-22.8854,-41.2507,-242.01:2:13:15:.:.:1:.:.:.:-9.82249e-05	./1:143.445:53:4:144:1:14:-45.4286,-100.278,-705.327:1:3:34:.:.:1:.:.:.:-0.0436845
chr1	22405378	.	ACTTTTTTTTTTTTTTTTTTG	TTTTTTTTTTTTTTTTTTTTA	623.333	REJECT	NS=2;DP=76;DPB=121.548;AC=2;AN=2;AF=0.0;RO=5;AO=4;PRO=41.4167;PAO=0.0;QR=179;QA=44;PQR=1471.33;PQA=0.0;SRF=2;SRR=3;SAF=0;SAR=4;SRP=3.44459;SAP=11.6962;AB=0.0754717;ABP=85.9769;RUN=1;RPP=5.18177;RPPR=3.44459;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=6.91895;DPRA=0.0;ODDS=20.7783;GTI=0;TYPE=complex;CIGAR=2X18M1X10M;NUMALT=5;MEANALT=22.0;LEN=31;MQM=56.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.2146:23:1:35:0:0:-22.8854,-42.1508,-243.046:0:0:15:.:.:1:.:.:.:-9.82249e-05	./1:143.445:53:4:144:4:44:-45.4286,-98.389,-703.046:4:12:34:.:.:1:.:.:.:-0.0436845
chr1	22405379	.	CT	C	623.333	REJECT	NS=2;DP=76;DPB=121.548;AC=2;AN=4;AF=0.5;RO=5;AO=22;PRO=41.4167;PAO=38.4167;QR=179;QA=609;PQR=1471.33;PQA=1306.33;SRF=2;SRR=3;SAF=10;SAR=12;SRP=3.44459;SAP=3.40511;AB=0.289474;ABP=32.268;RUN=1;RPP=6.56362;RPPR=3.44459;RPL=14.0;RPR=8.0;EPP=12.8806;EPPR=6.91895;DPRA=0.0;ODDS=20.7783;GTI=0;TYPE=del;CIGAR=2M1D28M;NUMALT=5;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.054;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.03;QD=4.33;ReadPosRankSum=0.813;SOR=1.085;ClippingRankSum=-0.271	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:88.1073:22:1:35:7:155:-22.8854,0.0,-11.8925:11:59:18:6,15:219,0,86:1:.:1:.:.:.:-9.82249e-05	0/1:143.445:53:4:144:15:454:-45.4286,0.0,-33.0824:15:44:34:.:.:.:.:1:.:.:.:-0.0436845
chr1	22405379	.	CTT	C	623.333	REJECT	NS=2;DP=76;DPB=121.548;AC=2;AN=2;AF=0.0;RO=5;AO=10;PRO=41.4167;PAO=31.9167;QR=179;QA=276;PQR=1471.33;PQA=1015.33;SRF=2;SRR=3;SAF=3;SAR=7;SRP=3.44459;SAP=6.48466;AB=0.131579;ABP=92.6121;RUN=1;RPP=24.725;RPPR=3.44459;RPL=10.0;RPR=0.0;EPP=6.48466;EPPR=6.91895;DPRA=0.0;ODDS=20.7783;GTI=0;TYPE=del;CIGAR=2M2D27M;NUMALT=5;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.2146:23:1:35:3:69:-22.8854,-16.2226,-35.9189:3:20:15:.:.:1:.:.:.:-9.82249e-05	./1:143.445:53:4:144:7:207:-45.4286,-30.152,-90.1507:7:21:34:.:.:1:.:.:.:-0.0436845
chr1	23885498	.	T	C	8540.865	REJECT	NS=2;DP=378;DPB=430.0;AC=3;AN=4;AF=0.75;RO=125;AO=305;PRO=0.0;PAO=0.0;QR=4756;QA=11655;PQR=0.0;PQA=0.0;SRF=65;SRR=60;SAF=167;SAR=138;SRP=3.44459;SAP=8.99787;AB=0.616564;ABP=41.484;RUN=1;RPP=4.21351;RPPR=6.91895;RPL=159.0;RPR=146.0;EPP=17.4275;EPPR=3.16665;DPRA=0.0;ODDS=65.8758;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.84;PAIRED=0.993443;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.802;Dels=0.0;FS=0.0;HaplotypeScore=3.8269;MLEAC=1;MLEAF=0.75;MQ=59.975;MQRankSum=-0.821;QD=25.345;ReadPosRankSum=1.87;SOR=0.9585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.5425:103:0:0:104:3995:-359.584,-28.1835,0.0:103:100:103:0,103:4207,309,0:1:.:1:.:.:.:-9.82249e-05	0/1:123.5425:326:125:4756:201:7660:-600.669,0.0,-339.541:201:62:326:125,201:7588,0,4383:.:1:1:.:.:.:-0.0436845
chr1	23885599	.	T	C	8628.475	REJECT	NS=2;DP=379;DPB=440.0;AC=3;AN=4;AF=0.75;RO=119;AO=320;PRO=0.0;PAO=0.0;QR=4514;QA=12052;PQR=0.0;PQA=0.0;SRF=66;SRR=53;SAF=164;SAR=156;SRP=6.09416;SAP=3.44459;AB=0.626959;ABP=47.6718;RUN=1;RPP=3.03744;RPPR=3.17453;RPL=159.0;RPR=161.0;EPP=3.25459;EPPR=8.28388;DPRA=0.0;ODDS=74.9897;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.303;Dels=0.0;FS=1.583;HaplotypeScore=6.8586;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.126;QD=28.54;ReadPosRankSum=-0.426;SOR=0.701	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.642:118:0:0:120:4586:-412.347,-32.1417,0.0:118:100:118:0,116:4916,349,0:1:.:1:.:.:.:-9.82249e-05	0/1:119.642:319:119:4514:200:7466:-585.17,0.0,-319.692:200:63:319:119,200:7370,0,4104:.:1:1:.:.:.:-0.0436845
chr1	25508191	.	C	T	3234.05	PASS	SOMATIC;NS=2;DP=399;DPB=399.0;AC=1;AN=3;AF=0.25;RO=278;AO=121;PRO=0.0;PAO=0.0;QR=10729;QA=4623;PQR=0.0;PQA=0.0;SRF=115;SRR=163;SAF=55;SAR=66;SRP=21.007;SAP=5.18177;AB=0.408784;ABP=24.4022;RUN=1;RPP=33.1776;RPPR=35.0044;RPL=81.0;RPR=40.0;EPP=39.3511;EPPR=33.036;DPRA=2.87379;ODDS=65.2446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.123;Dels=0.0;FS=0.911;HaplotypeScore=4.9968;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.17;QD=14.29;ReadPosRankSum=-1.08;SOR=0.594	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:100:103:3960:0:0:0.0,-27.9094,-356.428:0:0:100:97,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:129.501:296:175:6769:121:4623:-335.659,0.0,-528.669:121:41:296:169,114:38.0:0.395:2:4257,0,6686:.:1:1:.:.:1:-0.0436845
chr1	31502118	.	G	A	6556.93	REJECT	NS=2;DP=388;DPB=438.0;AC=2;AN=4;AF=0.5;RO=211;AO=226;PRO=0.0;PAO=0.0;QR=8098;QA=8751;PQR=0.0;PQA=0.0;SRF=78;SRR=133;SAF=84;SAR=142;SRP=34.1416;SAP=35.3326;AB=0.515982;ABP=3.98201;RUN=1;RPP=10.5432;RPPR=15.6172;RPL=127.0;RPR=99.0;EPP=33.1419;EPPR=17.0991;DPRA=0.0;ODDS=297.697;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982301;PAIREDR=0.995261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2615;Dels=0.0;FS=2.09;HaplotypeScore=6.865;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0885;QD=17.775;ReadPosRankSum=0.7955;SOR=0.624;ClippingRankSum=0.115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.356:95:47:1752:51:1943:-148.366,0.0,-131.152:49:52:95:45,48:1664,0,1561:1:.:1:.:.:.:-9.82249e-05	0/1:119.356:339:164:6346:175:6808:-520.492,0.0,-478.935:174:52:338:163,174:6599,0,6051:.:1:1:.:.:.:-0.0182792
chr1	39325063	.	T	C	2175.58	REJECT	NS=1;DP=65;DPB=65.0;AC=2;AN=4;AF=1.0;RO=0;AO=65;PRO=0.0;PAO=0.0;QR=0;QA=2507;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=44;SAR=21;SRP=0.0;SAP=20.6827;AB=0.0;ABP=0.0;RUN=1;RPP=35.1147;RPPR=0.0;RPL=17.0;RPR=48.0;EPP=4.64726;EPPR=0.0;DPRA=0.0;ODDS=45.2132;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=20.09;SOR=1.721	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:64:0:0:65:2507:-225.805,-17.6358,0.0:64:100:64:0,64:2583,192,0:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0182792
chr1	40261412	.	T	C	5768.27	REJECT	NS=2;DP=335;DPB=382.0;AC=2;AN=4;AF=0.5;RO=179;AO=203;PRO=0.0;PAO=0.0;QR=6861;QA=7739;PQR=0.0;PQA=0.0;SRF=103;SRR=76;SAF=129;SAR=74;SRP=11.8539;SAP=35.3684;AB=0.531414;ABP=6.28456;RUN=1;RPP=16.114;RPPR=23.4027;RPL=84.0;RPR=119.0;EPP=7.72764;EPPR=7.38964;DPRA=0.0;ODDS=293.368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994413;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1065;Dels=0.0;FS=3.274;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.131;QD=19.925;ReadPosRankSum=0.0945;SOR=0.9625;ClippingRankSum=-0.667	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.563:91:45:1712:48:1814:-138.102,0.0,-128.918:48:52:91:42,48:1834,0,2182:1:.:1:.:.:.:-9.82249e-05	0/1:124.563:289:134:5149:155:5925:-454.674,0.0,-384.871:155:54:289:134,155:5748,0,4893:.:1:1:.:.:.:-0.0182792
chr1	40261421	.	A	T	5906.950000000001	REJECT	NS=2;DP=346;DPB=393.0;AC=2;AN=4;AF=0.5;RO=183;AO=210;PRO=0.0;PAO=0.0;QR=6898;QA=7897;PQR=0.0;PQA=0.0;SRF=105;SRR=78;SAF=127;SAR=83;SRP=11.6606;SAP=23.0292;AB=0.534351;ABP=7.0383;RUN=1;RPP=17.9418;RPPR=21.0584;RPL=86.0;RPR=124.0;EPP=4.49931;EPPR=3.30695;DPRA=0.0;ODDS=285.525;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.315;Dels=0.0;FS=1.11;HaplotypeScore=5.9646;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4115;QD=20.46;ReadPosRankSum=-0.238;SOR=0.8505;ClippingRankSum=-0.339	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:44:1671:50:1844:-140.537,0.0,-124.967:50:54:92:41,50:1966,0,2104:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:299:139:5227:160:6053:-463.507,0.0,-389.201:160:54:299:139,160:5899,0,4945:.:1:1:.:.:.:-0.0182792
chr1	40261449	.	T	C	6370.26	REJECT	NS=2;DP=381;DPB=432.0;AC=2;AN=4;AF=0.5;RO=210;AO=222;PRO=0.0;PAO=0.0;QR=8065;QA=8462;PQR=0.0;PQA=0.0;SRF=117;SRR=93;SAF=124;SAR=98;SRP=8.96634;SAP=9.62253;AB=0.513889;ABP=3.73412;RUN=1;RPP=3.1668;RPPR=5.03701;RPL=113.0;RPR=109.0;EPP=6.92286;EPPR=3.67208;DPRA=0.0;ODDS=316.533;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1715;Dels=0.0;FS=0.3795;HaplotypeScore=6.7793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.629;QD=18.48;ReadPosRankSum=0.555;SOR=0.75;ClippingRankSum=-0.292	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.318:99:52:1972:49:1839:-138.178,0.0,-150.14:49:50:99:48,49:1732,0,1748:1:.:1:.:.:.:-9.82249e-05	0/1:118.318:331:158:6093:173:6623:-506.03,0.0,-458.414:173:52:331:158,173:6451,0,5856:.:1:1:.:.:.:-0.0182792
chr1	40261687	.	G	T	4939.795	REJECT	NS=2;DP=303;DPB=352.0;AC=2;AN=4;AF=0.5;RO=169;AO=182;PRO=0.0;PAO=0.0;QR=6472;QA=6888;PQR=0.0;PQA=0.0;SRF=51;SRR=118;SAF=49;SAR=133;SRP=60.6892;SAP=87.1966;AB=0.517045;ABP=3.89863;RUN=1;RPP=68.3454;RPPR=9.80739;RPL=128.0;RPR=54.0;EPP=15.2278;EPPR=5.18177;DPRA=0.0;ODDS=301.513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994505;PAIREDR=0.994083;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.4255;Dels=0.0;FS=3.28;HaplotypeScore=6.7816;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1295;QD=18.17;ReadPosRankSum=0.3955;SOR=1.104;ClippingRankSum=-0.066	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:47:1800:49:1817:-137.558,0.0,-136.021:49:51:96:47,49:1680,0,1649:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:255:122:4672:133:5071:-387.115,0.0,-351.183:132:52:254:121,132:4887,0,4415:.:1:1:.:.:.:-0.0182792
chr1	40262143	.	G	T	6000.075000000001	REJECT	NS=2;DP=400;DPB=455.0;AC=2;AN=4;AF=0.5;RO=235;AO=220;PRO=0.0;PAO=0.0;QR=8946;QA=8339;PQR=0.0;PQA=0.0;SRF=140;SRR=95;SAF=111;SAR=109;SRP=21.7219;SAP=3.04978;AB=0.483516;ABP=4.0841;RUN=1;RPP=17.2631;RPPR=3.75876;RPL=129.0;RPR=91.0;EPP=15.8022;EPPR=42.0506;DPRA=0.0;ODDS=336.777;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1818;MQMR=60.0;PAIRED=0.995455;PAIREDR=0.987234;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7755;Dels=0.0;FS=6.3005;HaplotypeScore=7.7963;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-0.463;QD=18.69;ReadPosRankSum=-0.807;SOR=0.4065;ClippingRankSum=-0.788	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5855:107:52:1956:57:2127:-161.92,0.0,-146.539:56:52:107:50,56:2243,0,4452:1:.:1:.:.:.:-9.82249e-05	0/1:117.5855:345:183:6990:163:6212:-465.037,0.0,-535.019:162:47:345:183,162:5847,0,6783:.:1:1:.:.:.:-0.0182792
chr1	40262161	.	T	TA	4179.175	REJECT	NS=2;DP=362;DPB=459.556;AC=2;AN=4;AF=0.5;RO=214;AO=178;PRO=38.5;PAO=39.5;QR=8098;QA=6631;PQR=1360.0;PQA=1380.0;SRF=104;SRR=110;SAF=72;SAR=106;SRP=3.37559;SAP=17.1127;AB=0.451777;ABP=10.9687;RUN=1;RPP=31.1174;RPPR=19.2456;RPL=113.0;RPR=65.0;EPP=15.5024;EPPR=34.8315;DPRA=0.0;ODDS=316.269;GTI=0;TYPE=ins;CIGAR=1M1I8M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1124;MQMR=60.0;PAIRED=0.994382;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6895;FS=6.21;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-0.0485;QD=15.765;RPA=6,7;RU=A;ReadPosRankSum=-0.7085;SOR=0.9905;STR;ClippingRankSum=0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.355:104:47:1787:52:1944:-154.885,0.0,-139.068:54:52:104:52,57:2389,0,4969:1:.:1:.:.:.:-9.82249e-05	0/1:120.355:312:167:6311:126:4687:-351.139,0.0,-497.201:127:43:296:171,128:3450,0,5112:.:1:1:.:.:.:-0.0182792
chr1	40262178	.	A	G	4516.82	REJECT	NS=2;DP=358;DPB=415.0;AC=2;AN=4;AF=0.5;RO=235;AO=179;PRO=0.0;PAO=0.0;QR=8979;QA=6745;PQR=0.0;PQA=0.0;SRF=99;SRR=136;SAF=59;SAR=120;SRP=15.6603;SAP=48.1502;AB=0.431325;ABP=20.0106;RUN=1;RPP=37.0866;RPPR=25.1963;RPL=116.0;RPR=63.0;EPP=13.2126;EPPR=42.0506;DPRA=0.0;ODDS=360.097;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.2235;MQMR=60.0;PAIRED=0.994413;PAIREDR=0.991489;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.552;Dels=0.0;FS=7.0;HaplotypeScore=4.9314;MLEAC=1;MLEAF=0.5;MQ=60.105;MQRankSum=0.5705;QD=15.995;ReadPosRankSum=0.2725;SOR=1.131;ClippingRankSum=-0.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.5525:111:57:2168:55:2103:-158.932,0.0,-164.784:54:49:111:56,54:2040,0,4782:1:.:1:.:.:.:-9.82249e-05	0/1:126.5525:302:178:6811:124:4642:-335.768,0.0,-530.866:124:41:302:178,124:4265,0,6710:.:1:1:.:.:.:-0.0182792
chr1	40363054	.	G	C	11540.7	REJECT	NS=2;DP=308;DPB=354.0;AC=4;AN=4;AF=1.0;RO=1;AO=352;PRO=0.0;PAO=0.0;QR=15;QA=13524;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=247;SAR=105;SRP=5.18177;SAP=127.401;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=176.0;RPR=176.0;EPP=33.2382;EPPR=5.18177;DPRA=0.0;ODDS=59.8729;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991477;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.706;Dels=0.0;FS=0.0;HaplotypeScore=7.8225;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.084;QD=32.87;ReadPosRankSum=1.494;SOR=1.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:89:3453:-310.846,-24.1274,0.0:89:100:89:0,89:3741,267,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:264:1:15:263:10071:-904.521,-70.1256,0.0:262:100:263:1,261:11146,771,0:.:1:1:.:.:.:-0.0182792
chr1	45291908	.	G	A	1585.675	REJECT	NS=2;DP=286;DPB=331.0;AC=2;AN=4;AF=0.5;RO=250;AO=80;PRO=0.0;PAO=0.0;QR=9474;QA=3111;PQR=0.0;PQA=0.0;SRF=185;SRR=65;SAF=59;SAR=21;SRP=128.087;SAP=42.2054;AB=0.241692;ABP=194.841;RUN=1;RPP=16.1477;RPPR=32.2296;RPL=29.0;RPR=51.0;EPP=3.44459;EPPR=3.5662;DPRA=0.0;ODDS=165.725;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.217;Dels=0.0;FS=1.2455;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2365;QD=9.98;ReadPosRankSum=1.0035;SOR=0.6755;ClippingRankSum=-0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1335:88:49:1823:40:1552:-115.6,0.0,-140.004:40:45:88:47,40:1402,0,1657:1:.:1:.:.:.:-9.82249e-05	0/1:118.1335:242:201:7651:40:1559:-74.9959,0.0,-622.977:40:17:241:201,40:1037,0,7821:.:1:1:.:.:.:-0.0182792
chr1	45292866	.	G	A	5287.895	REJECT	NS=2;DP=338;DPB=385.0;AC=2;AN=4;AF=0.5;RO=194;AO=191;PRO=0.0;PAO=0.0;QR=7353;QA=7291;PQR=0.0;PQA=0.0;SRF=111;SRR=83;SAF=99;SAR=92;SRP=11.7857;SAP=3.56738;AB=0.496104;ABP=3.06106;RUN=1;RPP=4.93166;RPPR=4.62211;RPL=89.0;RPR=102.0;EPP=3.56738;EPPR=3.05507;DPRA=0.0;ODDS=273.237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989691;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0915;Dels=0.0;FS=3.0725;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.4905;QD=18.0;ReadPosRankSum=-0.9025;SOR=0.5295;ClippingRankSum=-1.244	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.169:92:43:1603:50:1908:-146.587,0.0,-119.087:49:53:92:43,49:1727,0,1473:1:.:1:.:.:.:-9.82249e-05	0/1:118.169:292:151:5750:141:5383:-405.136,0.0,-438.121:141:48:292:151,141:5150,0,5546:.:1:1:.:.:.:-0.0182792
chr1	45293518	.	A	G	7197.06	REJECT	NS=2;DP=332;DPB=375.0;AC=3;AN=4;AF=0.75;RO=115;AO=258;PRO=0.0;PAO=0.0;QR=4420;QA=9840;PQR=0.0;PQA=0.0;SRF=66;SRR=49;SAF=133;SAR=125;SRP=8.4673;SAP=3.54896;AB=0.595156;ABP=25.7394;RUN=1;RPP=41.9285;RPPR=8.4673;RPL=95.0;RPR=163.0;EPP=7.08391;EPPR=3.48236;DPRA=0.0;ODDS=53.7674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996124;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.383;Dels=0.0;FS=0.7305;HaplotypeScore=8.7294;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.201;QD=26.605;ReadPosRankSum=-0.118;SOR=0.7135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:85:0:0:86:3281:-294.996,-22.9249,0.0:85:100:85:0,84:3481,252,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:289:115:4420:172:6559:-512.609,0.0,-319.849:172:60:287:115,172:6448,0,4113:.:1:1:.:.:.:-0.0182792
chr1	45293752	.	T	C	1648.73	REJECT	NS=2;DP=349;DPB=398.0;AC=2;AN=4;AF=0.5;RO=318;AO=80;PRO=0.0;PAO=0.0;QR=12197;QA=3099;PQR=0.0;PQA=0.0;SRF=142;SRR=176;SAF=36;SAR=44;SRP=10.9041;SAP=4.74748;AB=0.201005;ABP=312.058;RUN=1;RPP=5.72464;RPPR=3.11956;RPL=45.0;RPR=35.0;EPP=5.72464;EPPR=8.36387;DPRA=0.0;ODDS=46.2078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996855;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.034;Dels=0.0;FS=4.267;HaplotypeScore=4.8769;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.351;QD=9.645;ReadPosRankSum=0.616;SOR=0.903;ClippingRankSum=-2.05	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:48:1817:50:1958:-149.683,0.0,-136.998:50:51:98:48,50:1808,0,1687:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:300:270:10380:30:1141:-21.3534,0.0,-852.411:30:10:300:270,30:366,0,10750:.:1:1:.:.:.:-0.0182792
chr1	45294156	.	T	C	7563.120000000001	REJECT	NS=2;DP=316;DPB=356.0;AC=3;AN=4;AF=0.75;RO=93;AO=263;PRO=0.0;PAO=0.0;QR=3457;QA=9940;PQR=0.0;PQA=0.0;SRF=45;SRR=48;SAF=108;SAR=155;SRP=3.22044;SAP=21.249;AB=0.66426;ABP=67.9271;RUN=1;RPP=5.39644;RPPR=3.22044;RPL=123.0;RPR=140.0;EPP=8.17064;EPPR=4.15441;DPRA=0.0;ODDS=50.187;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996198;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.055;Dels=0.0;FS=2.181;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.58;QD=25.825;ReadPosRankSum=-0.504;SOR=1.0975	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:79:2922:-263.066,-21.37,0.0:79:100:79:0,79:3155,236,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:276:93:3457:184:7018:-556.661,0.0,-235.956:184:66:276:92,184:7041,0,2997:.:1:1:.:.:.:-0.0182792
chr1	45297753	.	A	G	2318.285	REJECT	NS=2;DP=394;DPB=456.0;AC=2;AN=4;AF=0.5;RO=345;AO=110;PRO=0.0;PAO=0.0;QR=13279;QA=4217;PQR=0.0;PQA=0.0;SRF=187;SRR=158;SAF=66;SAR=44;SRP=8.30366;SAP=12.5648;AB=0.241228;ABP=268.235;RUN=1;RPP=3.32615;RPPR=4.42648;RPL=53.0;RPR=57.0;EPP=4.2737;EPPR=6.94413;DPRA=0.0;ODDS=177.02;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6465;Dels=0.0;FS=4.022;HaplotypeScore=8.8136;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.649;QD=10.625;ReadPosRankSum=0.437;SOR=0.814;ClippingRankSum=1.546	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6135:120:60:2285:62:2345:-177.986,0.0,-172.601:61:51:120:57,61:2171,0,1996:1:.:1:.:.:.:-9.82249e-05	0/1:118.6135:333:285:10994:48:1872:-78.1633,0.0,-898.636:48:14:332:284,48:1108,0,11274:.:1:1:.:.:.:-0.0182792
chr1	45307506	.	G	A	5966.49	REJECT	NS=2;DP=268;DPB=305.0;AC=3;AN=4;AF=0.75;RO=93;AO=212;PRO=0.0;PAO=0.0;QR=3554;QA=8215;PQR=0.0;PQA=0.0;SRF=55;SRR=38;SAF=126;SAR=86;SRP=9.75821;SAP=19.3988;AB=0.597403;ABP=22.0459;RUN=1;RPP=62.1727;RPPR=31.613;RPL=68.0;RPR=144.0;EPP=7.10742;EPPR=3.59403;DPRA=0.0;ODDS=47.1984;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.253;Dels=0.0;FS=0.2475;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.852;QD=29.305;ReadPosRankSum=-0.131;SOR=0.9945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.136:73:0:0:74:2828:-254.666,-20.072,0.0:73:100:73:0,73:3135,220,0:1:.:1:.:.:.:-9.82249e-05	0/1:119.136:231:93:3554:138:5387:-421.984,0.0,-257.134:138:60:231:93,138:5332,0,3305:.:1:1:.:.:.:-0.0182792
chr1	45796269	.	G	C	9504.895	REJECT	NS=2;DP=256;DPB=302.0;AC=4;AN=4;AF=1.0;RO=0;AO=301;PRO=0.0;PAO=0.0;QR=0;QA=11434;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=74;SAR=227;SRP=0.0;SAP=171.887;AB=0.0;ABP=0.0;RUN=1;RPP=88.7221;RPPR=0.0;RPL=205.0;RPR=96.0;EPP=3.07523;EPPR=0.0;DPRA=0.0;ODDS=60.3863;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996678;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.4;SOR=2.3085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.489:90:0:0:90:3391:-305.229,-24.3504,0.0:90:100:90:0,90:3744,269,0:1:.:1:.:.:.:-9.82249e-05	1/1:120.489:211:0:0:211:8043:-723.569,-57.1531,0.0:211:100:211:0,211:9054,632,0:.:1:1:.:.:.:-0.0182792
chr1	45797505	.	C	G	2393.79	REJECT	NS=2;DP=398;DPB=451.0;AC=2;AN=4;AF=0.5;RO=334;AO=117;PRO=0.0;PAO=0.0;QR=12770;QA=4495;PQR=0.0;PQA=0.0;SRF=149;SRR=185;SAF=54;SAR=63;SRP=11.4361;SAP=4.51363;AB=0.259424;ABP=229.734;RUN=1;RPP=3.91972;RPPR=3.9465;RPL=62.0;RPR=55.0;EPP=3.02886;EPPR=10.5259;DPRA=0.0;ODDS=221.207;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991018;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.181;Dels=0.0;FS=3.85;HaplotypeScore=10.8202;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.597;QD=12.11;ReadPosRankSum=0.028;SOR=0.7885;ClippingRankSum=-1.412	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.1025:102:44:1679:62:2389:-186.302,0.0,-122.389:59:58:102:42,57:2052,0,1471:1:.:1:.:.:.:-9.82249e-05	0/1:120.1025:345:290:11091:55:2106:-96.0204,0.0,-904.114:55:16:345:290,55:1334,0,11315:.:1:1:.:.:.:-0.0182792
chr1	45798555	.	T	C	16300.25	REJECT	NS=2;DP=429;DPB=497.0;AC=4;AN=4;AF=1.0;RO=0;AO=497;PRO=0.0;PAO=0.0;QR=0;QA=19052;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=276;SRP=0.0;SAP=16.227;AB=0.0;ABP=0.0;RUN=1;RPP=3.22439;RPPR=0.0;RPL=252.0;RPR=245.0;EPP=3.04962;EPPR=0.0;DPRA=0.0;ODDS=88.5289;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8438;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.89;SOR=1.0125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:134:0:0:135:5198:-467.745,-36.5725,0.0:134:100:134:0,134:5579,402,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:362:0:0:362:13854:-1246.01,-98.0104,0.0:362:100:362:0,362:15548,1078,0:.:1:1:.:.:.:-0.0182792
chr1	46505309	.	A	G	2901.77	PASS	SOMATIC;NS=2;DP=418;DPB=418.0;AC=1;AN=3;AF=0.25;RO=304;AO=113;PRO=0.0;PAO=0.0;QR=11667;QA=4264;PQR=0.0;PQA=0.0;SRF=168;SRR=136;SAF=65;SAR=48;SRP=10.3247;SAP=8.56389;AB=0.350932;ABP=65.1603;RUN=1;RPP=8.56389;RPPR=6.46751;RPL=48.0;RPR=65.0;EPP=3.49071;EPPR=13.3248;DPRA=3.35417;ODDS=60.0023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.993421;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.395;Dels=0.0;FS=1.423;HaplotypeScore=9.7369;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.302;QD=11.57;ReadPosRankSum=1.718;SOR=0.85	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:96:3647:0:0:0.0,-25.6327,-327.907:0:0:90:85,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:129.501:321:208:8020:113:4264:-296.581,0.0,-634.44:112:35:320:199,106:37.0:0.347:2:3741,0,8026:.:1:1:.:.:1:-0.0182792
chr1	51340430	.	C	CTT	87.8	PASS	DP=58;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=59.79;QD=1.51;SOR=2.584	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,7:7:18.0:125,18,0:7:100:7:1:.:.:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0182792
chr1	51341695	.	A	G	1472.7849999999999	REJECT	NS=2;DP=376;DPB=424.0;AC=2;AN=4;AF=0.5;RO=339;AO=85;PRO=0.0;PAO=0.0;QR=12976;QA=3221;PQR=0.0;PQA=0.0;SRF=152;SRR=187;SAF=31;SAR=54;SRP=10.8571;SAP=16.5245;AB=0.200472;ABP=333.422;RUN=1;RPP=3.64897;RPPR=8.39735;RPL=45.0;RPR=40.0;EPP=5.07959;EPPR=22.387;DPRA=0.0;ODDS=149.708;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976471;PAIREDR=0.99705;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.157;Dels=0.0;FS=3.8025;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.318;QD=8.38;ReadPosRankSum=-0.907;SOR=1.114;ClippingRankSum=-1.703	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2785:92:54:2015:40:1498:-109.378,0.0,-155.936:39:42:92:52,38:1295,0,1793:1:.:1:.:.:.:-9.82249e-05	0/1:119.2785:329:285:10961:45:1723:-65.6153,0.0,-896.474:45:14:329:284,45:962,0,11199:.:1:1:.:.:.:-0.0182792
chr1	51439777	.	C	T	3143.81	PASS	SOMATIC;NS=2;DP=392;DPB=392.0;AC=1;AN=3;AF=0.25;RO=278;AO=114;PRO=0.0;PAO=0.0;QR=10532;QA=4413;PQR=0.0;PQA=0.0;SRF=136;SRR=142;SAF=59;SAR=55;SRP=3.2915;SAP=3.31507;AB=0.402827;ABP=26.2213;RUN=1;RPP=9.18185;RPPR=4.13509;RPL=48.0;RPR=66.0;EPP=3.31507;EPPR=5.00993;DPRA=2.59633;ODDS=69.0042;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.672;Dels=0.0;FS=2.039;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.729;QD=14.39;ReadPosRankSum=1.107;SOR=0.692	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:107:109:4122:0:0:0.0,-29.5422,-371.03:0:0:107:105,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:129.501:283:169:6410:114:4413:-320.313,0.0,-499.925:114:40:283:167,110:38.0:0.391:2:4100,0,6296:.:1:1:.:.:1:-0.0182792
chr1	51528697	.	C	T	2361.3	PASS	SOMATIC;NS=2;DP=407;DPB=407.0;AC=1;AN=3;AF=0.25;RO=311;AO=96;PRO=0.0;PAO=0.0;QR=11576;QA=3617;PQR=0.0;PQA=0.0;SRF=127;SRR=184;SAF=35;SAR=61;SRP=25.6956;SAP=18.3011;AB=0.315789;ABP=92.6121;RUN=1;RPP=3.8246;RPPR=3.01728;RPL=45.0;RPR=51.0;EPP=8.80089;EPPR=6.7039;DPRA=2.95146;ODDS=65.1974;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979167;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.416;Dels=0.01;FS=4.215;HaplotypeScore=25.4152;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.459;QD=10.2;ReadPosRankSum=-0.522;SOR=0.968	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.978:101:103:3854:0:0:0.0,-27.8889,-346.898:0:0:101:100,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:120.489:304:208:7722:96:3617:-243.464,0.0,-612.288:96:32:304:201,90:37.0:0.305:2:3148,0,7679:.:1:1:.:.:1:-0.0182792
chr1	51528752	.	T	C	2352.14	PASS	SOMATIC;NS=2;DP=335;DPB=335.0;AC=1;AN=3;AF=0.25;RO=244;AO=91;PRO=0.0;PAO=0.0;QR=9461;QA=3464;PQR=0.0;PQA=0.0;SRF=74;SRR=170;SAF=26;SAR=65;SRP=85.0279;SAP=39.3049;AB=0.372951;ABP=37.2199;RUN=1;RPP=17.9243;RPPR=30.9191;RPL=58.0;RPR=33.0;EPP=3.03416;EPPR=3.57987;DPRA=2.68132;ODDS=57.7853;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978022;PAIREDR=0.995902;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.913;Dels=0.0;FS=1.119;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.054;QD=12.81;ReadPosRankSum=1.75;SOR=0.823	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.573:89:91:3546:0:0:0.0,-24.6699,-319.205:0:0:89:88,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:119.2865:244:153:5915:91:3464:-245.528,0.0,-465.969:91:37:244:149,86:38.0:0.357:2:3153,0,5878:.:1:1:.:.:1:-0.0182792
chr1	51530486	.	C	T	2839.06	PASS	SOMATIC;NS=2;DP=402;DPB=402.0;AC=1;AN=3;AF=0.25;RO=292;AO=109;PRO=0.0;PAO=0.0;QR=11234;QA=4136;PQR=0.0;PQA=0.0;SRF=122;SRR=170;SAF=44;SAR=65;SRP=20.1441;SAP=11.7958;AB=0.362126;ABP=52.7089;RUN=1;RPP=7.4927;RPPR=18.746;RPL=62.0;RPR=47.0;EPP=6.37708;EPPR=28.0269;DPRA=2.9802;ODDS=63.9894;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.686;Dels=0.0;FS=0.0;HaplotypeScore=6.8893;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.616;QD=12.4;ReadPosRankSum=-0.292;SOR=0.667	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.107:98:101:3872:0:0:0.0,-27.3643,-348.51:0:0:98:95,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:119.5535:301:191:7362:109:4136:-290.79,0.0,-580.905:109:36:300:181,106:38.0:0.376:2:3762,0,7317:.:1:1:.:.:1:-0.0182792
chr1	51539890	.	T	C	2707.52	PASS	SOMATIC;NS=2;DP=367;DPB=367.0;AC=1;AN=3;AF=0.25;RO=260;AO=107;PRO=0.0;PAO=0.0;QR=9642;QA=3951;PQR=0.0;PQA=0.0;SRF=94;SRR=166;SAF=41;SAR=66;SRP=46.3061;SAP=15.6941;AB=0.387681;ABP=33.2536;RUN=1;RPP=15.6941;RPPR=31.1058;RPL=66.0;RPR=41.0;EPP=25.1106;EPPR=31.1058;DPRA=3.03297;ODDS=57.7092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=0.992308;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.683;Dels=0.0;FS=2.177;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.048;QD=12.82;ReadPosRankSum=0.055;SOR=0.554	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:91:3380:0:0:0.0,-24.6368,-304.267:0:0:88:86,0:.:0.0:0:.:.:.:0:.:.:0:-9.82249e-05	0/1:129.501:275:169:6262:107:3951:-280.729,0.0,-488.584:106:39:275:164,103:37.0:0.387:2:3553,0,6110:.:1:1:.:.:1:-0.0182792
chr1	65311214	.	G	C	5139.555	REJECT	NS=2;DP=369;DPB=422.0;AC=2;AN=4;AF=0.5;RO=236;AO=186;PRO=0.0;PAO=0.0;QR=8896;QA=7118;PQR=0.0;PQA=0.0;SRF=141;SRR=95;SAF=104;SAR=82;SRP=22.4799;SAP=8.6608;AB=0.440758;ABP=15.8745;RUN=1;RPP=7.68013;RPPR=4.81373;RPL=83.0;RPR=103.0;EPP=5.99899;EPPR=5.3658;DPRA=0.0;ODDS=287.023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9915;PAIRED=0.989247;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.344;Dels=0.0;FS=2.08;HaplotypeScore=9.6833;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.734;QD=15.475;ReadPosRankSum=0.475;SOR=0.525;ClippingRankSum=-0.01	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.007:103:60:2299:45:1716:-125.992,0.0,-178.483:44:43:103:58,43:1532,0,1958:1:.:1:.:.:.:-9.82249e-05	0/1:121.007:317:176:6597:141:5402:-400.069,0.0,-507.547:141:44:317:176,141:5120,0,6364:.:1:1:.:.:.:-0.0182792
chr1	65321250	.	G	A	5010.125	REJECT	NS=2;DP=332;DPB=388.0;AC=2;AN=4;AF=0.5;RO=209;AO=179;PRO=0.0;PAO=0.0;QR=7952;QA=6844;PQR=0.0;PQA=0.0;SRF=136;SRR=73;SAF=108;SAR=71;SRP=44.2475;SAP=19.6178;AB=0.46134;ABP=8.04722;RUN=1;RPP=3.99292;RPPR=8.50651;RPL=85.0;RPR=94.0;EPP=3.02243;EPPR=3.27005;DPRA=0.0;ODDS=260.135;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994413;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7145;Dels=0.0;FS=2.675;HaplotypeScore=2.8603;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1425;QD=15.315;ReadPosRankSum=-0.0965;SOR=0.496;ClippingRankSum=0.498	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.225:108:70:2679:41:1591:-113.101,0.0,-211.035:40:37:108:65,40:1352,0,2427:1:.:1:.:.:.:-9.82249e-05	0/1:120.225:277:139:5273:138:5253:-397.486,0.0,-399.333:138:50:277:139,138:5020,0,5083:.:1:1:.:.:.:-0.0182792
chr1	65321388	.	G	A	4932.57	REJECT	NS=2;DP=292;DPB=335.0;AC=2;AN=4;AF=0.5;RO=160;AO=175;PRO=0.0;PAO=0.0;QR=6087;QA=6637;PQR=0.0;PQA=0.0;SRF=59;SRR=101;SAF=63;SAR=112;SRP=26.9508;SAP=32.8029;AB=0.522388;ABP=4.46875;RUN=1;RPP=43.3252;RPPR=20.5992;RPL=116.0;RPR=59.0;EPP=4.01538;EPPR=7.40753;DPRA=0.0;ODDS=230.882;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994286;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.527;Dels=0.0;FS=0.241;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.536;QD=17.445;ReadPosRankSum=-0.013;SOR=0.6845;ClippingRankSum=-0.528	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9605:83:47:1774:37:1386:-102.031,0.0,-136.952:36:44:83:46,36:1226,0,1622:1:.:1:.:.:.:-9.82249e-05	0/1:117.9605:250:113:4313:138:5251:-404.371,0.0,-319.992:137:55:250:113,137:5097,0,4052:.:1:1:.:.:.:-0.0182792
chr1	65335095	.	T	C	5818.215	REJECT	NS=2;DP=386;DPB=442.0;AC=2;AN=4;AF=0.5;RO=233;AO=209;PRO=0.0;PAO=0.0;QR=8899;QA=8004;PQR=0.0;PQA=0.0;SRF=94;SRR=139;SAF=95;SAR=114;SRP=21.8825;SAP=6.76103;AB=0.472851;ABP=5.84009;RUN=1;RPP=5.34801;RPPR=5.70367;RPL=112.0;RPR=97.0;EPP=8.50651;EPPR=7.12025;DPRA=0.0;ODDS=342.213;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=0.995708;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.884;Dels=0.0;FS=2.8015;HaplotypeScore=7.8318;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.218;QD=16.53;ReadPosRankSum=0.6055;SOR=0.5865;ClippingRankSum=1.003	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:59:2244:53:1994:-149.116,0.0,-171.636:52:47:110:57,51:1747,0,1961:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:330:174:6655:156:6010:-451.182,0.0,-509.204:156:47:330:174,156:5734,0,6462:.:1:1:.:.:.:-0.0182792
chr1	75001474	.	A	T	13065.0	REJECT	NS=2;DP=342;DPB=390.0;AC=4;AN=4;AF=1.0;RO=0;AO=390;PRO=0.0;PAO=0.0;QR=0;QA=15049;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=147;SRP=0.0;SAP=54.3239;AB=0.0;ABP=0.0;RUN=1;RPP=12.832;RPPR=0.0;RPL=174.0;RPR=216.0;EPP=11.9189;EPPR=0.0;DPRA=0.0;ODDS=63.6127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987179;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9327;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.04;SOR=1.3065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3639:-327.579,-25.7516,0.0:94:100:94:0,93:3779,279,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:294:0:0:295:11410:-1026.27,-79.902,0.0:294:100:294:0,294:12732,876,0:.:1:1:.:.:.:-0.0182792
chr1	78013771	.	T	C	5119.555	REJECT	NS=2;DP=334;DPB=381.0;AC=2;AN=4;AF=0.5;RO=192;AO=189;PRO=0.0;PAO=0.0;QR=7387;QA=7108;PQR=0.0;PQA=0.0;SRF=108;SRR=84;SAF=119;SAR=70;SRP=9.52472;SAP=30.596;AB=0.496063;ABP=3.06159;RUN=1;RPP=43.0045;RPPR=3.19126;RPL=65.0;RPR=124.0;EPP=10.1911;EPPR=3.73412;DPRA=0.0;ODDS=301.446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994709;PAIREDR=0.989583;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1135;Dels=0.0;FS=2.5245;HaplotypeScore=7.8508;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.199;QD=17.455;ReadPosRankSum=0.0055;SOR=0.9805;ClippingRankSum=0.023	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:45:1740:47:1778:-135.119,0.0,-131.71:47:51:92:45,47:1639,0,1523:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:288:147:5647:142:5330:-401.164,0.0,-429.702:142:49:288:146,142:5040,0,5419:.:1:1:.:.:.:-0.0182792
chr1	78435701	.	T	TA	317.153	REJECT	NS=2;DP=186;DPB=219.96;AC=2;AN=2;AF=0.0;RO=133;AO=14;PRO=44.0;PAO=21.0;QR=4962;QA=440;PQR=1574.83;PQA=708.833;SRF=8;SRR=125;SAF=1;SAR=13;SRP=226.509;SAP=25.3454;AB=0.0752688;ABP=294.455;RUN=1;RPP=3.63072;RPPR=13.2146;RPL=8.0;RPR=6.0;EPP=5.49198;EPPR=5.76954;DPRA=0.0;ODDS=38.0537;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=59.985;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:48:31:1146:5:136:-21.3942,-19.8098,-122.701:5:11:44:.:.:1:.:.:.:-9.82249e-05	./1:130.018:138:102:3816:9:304:-21.7206,-30.1345,-405.798:9:7:131:.:.:1:.:.:.:-0.0182792
chr1	78435701	.	TA	T	317.153	REJECT	NS=2;DP=186;DPB=219.96;AC=2;AN=4;AF=0.5;RO=133;AO=28;PRO=44.0;PAO=23.0;QR=4962;QA=934;PQR=1574.83;PQA=797.333;SRF=8;SRR=125;SAF=2;SAR=26;SRP=226.509;SAP=47.6806;AB=0.150538;ABP=200.311;RUN=1;RPP=14.1779;RPPR=13.2146;RPL=20.0;RPR=8.0;EPP=7.97367;EPPR=5.76954;DPRA=0.0;ODDS=38.0537;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.3571;MQMR=59.985;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=2.102;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.765;QD=1.96;ReadPosRankSum=-0.626;SOR=0.43;ClippingRankSum=0.654	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:48:31:1146:8:296:-21.3942,0.0,-101.396:9:20:46:38,11:161,0,788:1:.:1:.:.:.:-9.82249e-05	0/1:130.018:138:102:3816:20:638:-21.7206,0.0,-383.659:20:15:131:.:.:.:.:1:.:.:.:-0.0182792
chr1	82510916	.	G	A	5739.66	REJECT	NS=2;DP=339;DPB=391.0;AC=2;AN=4;AF=0.5;RO=187;AO=203;PRO=0.0;PAO=0.0;QR=7105;QA=7782;PQR=0.0;PQA=0.0;SRF=128;SRR=59;SAF=132;SAR=71;SRP=58.2958;SAP=42.8135;AB=0.519182;ABP=4.25987;RUN=1;RPP=12.0064;RPPR=22.5303;RPL=87.0;RPR=116.0;EPP=12.0064;EPPR=3.3006;DPRA=0.0;ODDS=330.236;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2065;Dels=0.0;FS=7.3685;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.454;QD=18.205;ReadPosRankSum=0.5105;SOR=0.8755;ClippingRankSum=0.117	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:52:1991:50:1929:-145.98,0.0,-151.564:50:49:102:52,50:1734,0,1739:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:288:135:5114:153:5853:-448.852,0.0,-382.004:153:53:287:133,153:5678,0,4780:.:1:1:.:.:.:-0.0182792
chr1	96018531	.	C	T	14267.45	REJECT	NS=2;DP=372;DPB=418.0;AC=4;AN=4;AF=1.0;RO=0;AO=418;PRO=0.0;PAO=0.0;QR=0;QA=16173;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=172;SAR=246;SRP=0.0;SAP=31.4576;AB=0.0;ABP=0.0;RUN=1;RPP=9.01562;RPPR=0.0;RPL=226.0;RPR=192.0;EPP=15.9976;EPPR=0.0;DPRA=0.0;ODDS=61.1439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995215;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7482;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.68;SOR=1.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:91:3557:-320.207,-24.6794,0.0:90:100:90:0,90:3673,271,0:1:.:1:.:.:.:-9.82249e-05	1/1:129.501:327:0:0:327:12616:-1134.68,-88.5524,0.0:327:100:327:0,327:14104,972,0:.:1:1:.:.:.:-0.0182792
chr1	105029388	.	G	A	10236.0	REJECT	NS=2;DP=403;DPB=459.0;AC=2;AN=4;AF=0.5;RO=128;AO=331;PRO=0.0;PAO=0.0;QR=4903;QA=12852;PQR=0.0;PQA=0.0;SRF=64;SRR=64;SAF=163;SAR=168;SRP=3.0103;SAP=3.17431;AB=0.721133;ABP=197.965;RUN=1;RPP=3.8041;RPPR=6.33537;RPL=160.0;RPR=171.0;EPP=18.7617;EPPR=8.50684;DPRA=0.0;ODDS=286.926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9396;MQMR=60.0;PAIRED=0.996979;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2845;Dels=0.0;FS=2.8825;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.152;QD=23.195;ReadPosRankSum=1.599;SOR=0.5305;ClippingRankSum=-0.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.1855:108:65:2444:46:1727:-125.353,0.0,-189.918:45:42:108:60,45:1468,0,2116:1:.:1:.:.:.:-9.82249e-05	0/1:123.1855:348:63:2459:285:11125:-906.292,0.0,-126.888:285:82:348:63,285:11402,0,1718:.:1:1:.:.:.:-0.0182792
chr1	108002360	.	T	A	8547.57	REJECT	NS=2;DP=318;DPB=363.0;AC=2;AN=4;AF=0.5;RO=90;AO=273;PRO=0.0;PAO=0.0;QR=3479;QA=10685;PQR=0.0;PQA=0.0;SRF=48;SRR=42;SAF=148;SAR=125;SRP=3.87889;SAP=7.21802;AB=0.752066;ABP=203.342;RUN=1;RPP=15.1085;RPPR=5.42305;RPL=117.0;RPR=156.0;EPP=4.79998;EPPR=10.8276;DPRA=0.0;ODDS=131.453;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.989;MQMR=60.0;PAIRED=0.992674;PAIREDR=0.988889;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.2735;Dels=0.0;FS=3.54;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.393;QD=24.475;ReadPosRankSum=1.3185;SOR=0.6135;ClippingRankSum=0.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:52:2003:36:1418:-103.785,0.0,-156.468:36:41:88:52,36:1285,0,1826:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:274:38:1476:237:9267:-759.03,0.0,-58.247:236:86:274:38,236:9529,0,833:.:1:1:.:.:.:-0.0182792
chr1	111034818	.	T	C	4192.07	REJECT	NS=2;DP=258;DPB=299.0;AC=2;AN=4;AF=0.5;RO=146;AO=152;PRO=0.0;PAO=0.0;QR=5578;QA=5750;PQR=0.0;PQA=0.0;SRF=82;SRR=64;SAF=101;SAR=51;SRP=7.82918;SAP=38.7253;AB=0.508361;ABP=3.19186;RUN=1;RPP=77.0689;RPPR=98.1981;RPL=40.0;RPR=112.0;EPP=5.81036;EPPR=3.96218;DPRA=0.0;ODDS=195.365;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.991;Dels=0.0;FS=7.845;HaplotypeScore=3.9128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.512;QD=16.895;ReadPosRankSum=0.6885;SOR=1.1315;ClippingRankSum=-1.935	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:48:1836:33:1213:-87.2568,0.0,-143.374:33:41:80:47,33:1117,0,1707:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:217:98:3742:119:4537:-349.369,0.0,-277.863:119:55:217:98,119:4444,0,3559:.:1:1:.:.:.:-0.0182792
chr1	118165691	.	C	T	8898.61	REJECT	NS=2;DP=343;DPB=398.0;AC=2;AN=4;AF=0.5;RO=108;AO=290;PRO=0.0;PAO=0.0;QR=4101;QA=11173;PQR=0.0;PQA=0.0;SRF=51;SRR=57;SAF=160;SAR=130;SRP=3.73412;SAP=9.74935;AB=0.728643;ABP=183.734;RUN=1;RPP=3.0103;RPPR=3.0103;RPL=145.0;RPR=145.0;EPP=7.32329;EPPR=3.73412;DPRA=0.0;ODDS=150.126;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0525;Dels=0.0;FS=3.0985;HaplotypeScore=4.8569;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0355;QD=23.405;ReadPosRankSum=1.336;SOR=0.7445;ClippingRankSum=0.853	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:66:2506:45:1691:-122.131,0.0,-195.476:44:41:109:64,44:1424,0,2211:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:287:42:1595:245:9482:-775.123,0.0,-65.736:245:85:287:42,245:9789,0,920:.:1:1:.:.:.:-0.0182792
chr1	120075675	.	T	C	7779.745	REJECT	NS=2;DP=369;DPB=416.0;AC=3;AN=4;AF=0.75;RO=139;AO=277;PRO=0.0;PAO=0.0;QR=5347;QA=10657;PQR=0.0;PQA=0.0;SRF=72;SRR=67;SAF=131;SAR=146;SRP=3.40085;SAP=4.77413;AB=0.569659;ABP=16.624;RUN=1;RPP=3.39442;RPPR=12.7741;RPL=135.0;RPR=142.0;EPP=18.8848;EPPR=14.3988;DPRA=0.0;ODDS=59.0282;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99278;PAIREDR=0.992806;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5;Dels=0.0;FS=1.2015;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.19;QD=29.115;ReadPosRankSum=-1.584;SOR=0.7895	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:93:3548:-319.406,-25.2096,0.0:91:100:91:0,90:3736,271,0:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:323:139:5347:184:7109:-551.903,0.0,-393.458:184:57:323:139,184:6951,0,5014:.:1:1:.:.:.:-0.0182792
chr1	120355513	.	C	T	6125.015	REJECT	NS=2;DP=371;DPB=436.0;AC=2;AN=4;AF=0.5;RO=215;AO=221;PRO=0.0;PAO=0.0;QR=8173;QA=8508;PQR=0.0;PQA=0.0;SRF=102;SRR=113;SAF=98;SAR=123;SRP=4.23238;SAP=9.15134;AB=0.506881;ABP=3.1896;RUN=1;RPP=17.9551;RPPR=3.82839;RPL=130.0;RPR=91.0;EPP=13.7105;EPPR=21.685;DPRA=0.0;ODDS=417.64;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.972093;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.245;Dels=0.0;FS=2.22;HaplotypeScore=6.8297;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5265;QD=17.855;ReadPosRankSum=0.3795;SOR=0.788;ClippingRankSum=-2.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:124:64:2413:64:2447:-185.553,0.0,-182.469:62:50:124:60,61:2061,0,2023:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:307:151:5760:157:6061:-461.763,0.0,-434.648:157:51:307:149,157:5898,0,5416:.:1:1:.:.:.:-0.0182792
chr1	120458004	.	A	T	1452.82	REJECT	NS=2;DP=295;DPB=339.0;AC=2;AN=4;AF=0.5;RO=259;AO=79;PRO=0.0;PAO=0.0;QR=9885;QA=3003;PQR=0.0;PQA=0.0;SRF=137;SRR=122;SAF=43;SAR=36;SRP=4.89671;SAP=4.35716;AB=0.233038;ABP=212.862;RUN=1;RPP=12.9331;RPPR=5.43329;RPL=30.0;RPR=49.0;EPP=3.03779;EPPR=9.12228;DPRA=0.0;ODDS=169.124;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9266;PAIRED=1.0;PAIREDR=0.996139;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2;Dels=0.0;FS=0.413;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.09;QD=8.995;ReadPosRankSum=0.753;SOR=0.778;ClippingRankSum=0.082	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:51:1879:37:1421:-104.092,0.0,-145.333:36:42:86:49,35:1209,0,1686:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:251:208:8006:42:1582:-74.9658,0.0,-652.457:42:17:250:208,42:1015,0,8245:.:1:1:.:.:.:-0.0182792
chr1	120512104	.	T	C	6929.41	REJECT	NS=2;DP=186;DPB=211.0;AC=4;AN=4;AF=1.0;RO=1;AO=210;PRO=0.0;PAO=0.0;QR=16;QA=8024;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=165;SAR=45;SRP=5.18177;SAP=151.911;AB=0.0;ABP=0.0;RUN=1;RPP=83.0859;RPPR=5.18177;RPL=61.0;RPR=149.0;EPP=12.3166;EPPR=5.18177;DPRA=0.0;ODDS=34.2066;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985714;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.965;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.295;SOR=2.993	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.279:47:0:0:48:1787:-160.998,-12.9807,0.0:47:100:47:0,46:1944,138,0:1:.:1:.:.:.:-9.82249e-05	1/1:123.058:162:1:16:162:6237:-559.711,-42.71,0.0:162:99:162:0,162:6958,479,0:.:1:1:.:.:.:-0.0182792
chr1	120539331	.	C	T	3452.6549999999997	REJECT	NS=2;DP=369;DPB=412.0;AC=2;AN=4;AF=0.5;RO=257;AO=155;PRO=0.0;PAO=0.0;QR=9661;QA=5771;PQR=0.0;PQA=0.0;SRF=115;SRR=142;SAF=74;SAR=81;SRP=9.16985;SAP=3.69677;AB=0.376214;ABP=57.8452;RUN=1;RPP=20.1719;RPPR=3.42432;RPL=60.0;RPR=95.0;EPP=3.69677;EPPR=4.91139;DPRA=0.0;ODDS=265.795;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=50.7935;MQMR=59.0272;PAIRED=0.980645;PAIREDR=0.992218;technology.ILLUMINA=1.0;MQ0=7;BaseQRankSum=-0.2855;Dels=0.0;FS=4.8445;HaplotypeScore=14.6112;MLEAC=1;MLEAF=0.5;MQ=56.99;MQRankSum=-0.9485;QD=12.695;ReadPosRankSum=1.0945;SOR=0.8585;ClippingRankSum=-0.961	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:43:1622:47:1712:-116.939,0.0,-122.032:44:50:86:42,41:1303,0,1529:1:.:1:.:.:.:-9.82249e-05	0/1:129.501:324:214:8039:108:4059:-253.353,0.0,-633.247:111:34:324:213,114:3308,0,7968:.:1:1:.:.:.:-0.0182792
chr1	120572547	.	T	C	931.103	REJECT	NS=1;DP=106;DPB=106.0;AC=1;AN=4;AF=0.5;RO=55;AO=50;PRO=0.0;PAO=0.0;QR=2081;QA=1903;PQR=0.0;PQA=0.0;SRF=47;SRR=8;SAF=43;SAR=7;SRP=63.0614;SAP=59.2949;AB=0.471698;ABP=3.74778;RUN=1;RPP=7.35324;RPPR=17.2631;RPL=20.0;RPR=30.0;EPP=9.26414;EPPR=11.8936;DPRA=0.0;ODDS=214.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=32.3;MQMR=31.7636;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.467;FS=2.457;MLEAC=1;MLEAF=0.5;MQ=34.07;MQRankSum=0.821;QD=14.09;ReadPosRankSum=-0.438;SOR=1.054;ClippingRankSum=0.532	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.77:101:55:2081:50:1903:-105.109,0.0,-118.387:47:47:101:52,45:1409,0,1596:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0182792
chr1	120572572	.	C	T	883.959	REJECT	NS=1;DP=104;DPB=104.0;AC=1;AN=4;AF=0.5;RO=56;AO=48;PRO=0.0;PAO=0.0;QR=2134;QA=1886;PQR=0.0;PQA=0.0;SRF=48;SRR=8;SAF=43;SAR=5;SRP=65.0524;SAP=68.3354;AB=0.461538;ABP=4.34659;RUN=1;RPP=4.6389;RPPR=5.49198;RPL=27.0;RPR=21.0;EPP=3.73412;EPPR=3.63072;DPRA=0.0;ODDS=203.539;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=31.5833;MQMR=32.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.849;FS=2.697;MLEAC=1;MLEAF=0.5;MQ=33.67;MQRankSum=0.621;QD=14.08;ReadPosRankSum=0.143;SOR=1.306;ClippingRankSum=0.438	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.261:100:56:2134:48:1886:-100.724,0.0,-122.869:46:46:100:52,44:1380,0,1607:1:.:1:.:.:.:-9.82249e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0182792
chr1	145436887	.	G	GT	295.922	REJECT	NS=2;DP=114;DPB=159.889;AC=2;AN=3;AF=0.25;RO=46;AO=19;PRO=24.3;PAO=18.3;QR=1641;QA=521;PQR=860.967;PQA=641.467;SRF=8;SRR=38;SAF=3;SAR=16;SRP=45.4956;SAP=22.325;AB=0.166667;ABP=113.032;RUN=1;RPP=22.325;RPPR=30.2009;RPL=16.0;RPR=3.0;EPP=8.61041;EPPR=9.80795;DPRA=0.0;ODDS=1.9398;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=5;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=59.7174;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.833;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.153;QD=1.08;RPA=17,18;RU=T;ReadPosRankSum=-1.121;SOR=0.585;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.79739:24:9:327:1:39:-3.68305,-1.26174,-33.7601:1:5:19:.:.:.:.:1:.:.:.:0.000222528	0/1:114.7065:129:37:1314:18:482:-35.3206,0.0,-126.061:24:26:90:73,30:219,0,895:.:1:1:.:.:.:-0.0139302
chr1	145436887	.	G	GTT	295.922	REJECT	NS=2;DP=114;DPB=159.889;AC=2;AN=3;AF=0.25;RO=46;AO=4;PRO=24.3;PAO=18.3;QR=1641;QA=72;PQR=860.967;PQA=649.467;SRF=8;SRR=38;SAF=0;SAR=4;SRP=45.4956;SAP=11.6962;AB=0.0350877;ABP=217.034;RUN=1;RPP=11.6962;RPPR=30.2009;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=9.80795;DPRA=0.0;ODDS=1.9398;GTI=0;TYPE=ins;CIGAR=1M2I26M;NUMALT=5;MEANALT=12.0;LEN=2;MQM=58.25;MQMR=59.7174;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8.79739:24:9:327:2:44:-3.68305,0.0,-32.2424:2:11:19:.:.:1:.:.:.:0.000222528	./1:130.413:90:37:1314:2:28:-35.3206,-36.8925,-167.217:2:3:77:.:.:1:.:.:.:-0.0139302
chr1	145436887	.	GT	G	295.922	REJECT	NS=2;DP=114;DPB=159.889;AC=2;AN=2;AF=0.0;RO=46;AO=16;PRO=24.3;PAO=15.8;QR=1641;QA=446;PQR=860.967;PQA=550.967;SRF=8;SRR=38;SAF=0;SAR=16;SRP=45.4956;SAP=37.7539;AB=0.140351;ABP=131.089;RUN=1;RPP=3.55317;RPPR=30.2009;RPL=9.0;RPR=7.0;EPP=3.55317;EPPR=9.80795;DPRA=0.0;ODDS=1.9398;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=5;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=59.7174;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.79739:24:9:327:4:100:-3.68305,-1.99511,-70.7087:4:21:19:.:.:1:.:.:.:0.000222528	./1:130.413:90:37:1314:12:346:-35.3206,-21.0951,-257.95:12:16:77:.:.:1:.:.:.:-0.0139302
chr1	145436887	.	GTT	G	295.922	REJECT	NS=2;DP=114;DPB=159.889;AC=2;AN=2;AF=0.0;RO=46;AO=9;PRO=24.3;PAO=12.0;QR=1641;QA=265;PQR=860.967;PQA=422.167;SRF=8;SRR=38;SAF=2;SAR=7;SRP=45.4956;SAP=9.04217;AB=0.0789474;ABP=178.557;RUN=1;RPP=5.18177;RPPR=30.2009;RPL=6.0;RPR=3.0;EPP=3.25157;EPPR=9.80795;DPRA=0.0;ODDS=1.9398;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=5;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=59.7174;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.79739:24:9:327:1:40:-3.68305,-10.6636,-121.625:1:5:19:.:.:1:.:.:.:0.000222528	./1:130.413:90:37:1314:8:225:-35.3206,-40.5418,-295.029:8:10:77:.:.:1:.:.:.:-0.0139302
chr1	145436906	.	C	T	295.922	REJECT	NS=2;DP=114;DPB=159.889;AC=2;AN=2;AF=0.0;RO=46;AO=2;PRO=24.3;PAO=16.3;QR=1641;QA=32;PQR=860.967;PQA=579.967;SRF=8;SRR=38;SAF=2;SAR=0;SRP=45.4956;SAP=7.35324;AB=0.0833333;ABP=39.2015;RUN=1;RPP=7.35324;RPPR=30.2009;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=9.80795;DPRA=0.0;ODDS=1.9398;GTI=0;TYPE=snp;CIGAR=19M1X7M;NUMALT=5;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=59.7174;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.79739:24:9:327:2:32:-3.68305,-4.32553,-36.843:2:11:19:.:.:1:.:.:.:0.000222528	./1:130.413:90:37:1314:0:0:-35.3206,-46.9725,-172.323:0:0:77:.:.:1:.:.:.:-0.0139302
chr1	152487979	.	C	T	2645.42	REJECT	NS=1;DP=79;DPB=79.0;AC=2;AN=4;AF=1.0;RO=0;AO=79;PRO=0.0;PAO=0.0;QR=0;QA=2986;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=31;SAR=48;SRP=0.0;SAP=10.954;AB=0.0;ABP=0.0;RUN=1;RPP=4.35716;RPPR=0.0;RPL=36.0;RPR=43.0;EPP=5.23675;EPPR=0.0;DPRA=0.0;ODDS=53.8705;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9747;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.11;SOR=1.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.314:78:0:0:79:2986:-268.831,-21.3956,0.0:78:100:78:0,78:3242,234,0:1:.:1:.:.:.:0.000222528	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	152488063	.	C	T	2641.45	REJECT	NS=1;DP=79;DPB=79.0;AC=2;AN=4;AF=1.0;RO=0;AO=79;PRO=0.0;PAO=0.0;QR=0;QA=3005;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=23;SAR=56;SRP=0.0;SAP=32.9436;AB=0.0;ABP=0.0;RUN=1;RPP=3.25768;RPPR=0.0;RPL=41.0;RPR=38.0;EPP=5.23675;EPPR=0.0;DPRA=0.0;ODDS=53.9209;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987342;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.87;SOR=1.936	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:3005:-270.58,-21.4175,0.0:78:100:78:0,77:3245,231,0:1:.:1:.:.:.:0.000222528	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	155870416	.	G	A	4568.12	REJECT	NS=2;DP=220;DPB=258.0;AC=3;AN=4;AF=0.75;RO=79;AO=179;PRO=0.0;PAO=0.0;QR=2968;QA=6764;PQR=0.0;PQA=0.0;SRF=30;SRR=49;SAF=57;SAR=122;SRP=12.9331;SAP=54.2643;AB=0.565934;ABP=9.88265;RUN=1;RPP=94.8308;RPPR=5.23675;RPL=133.0;RPR=46.0;EPP=3.31358;EPPR=6.33623;DPRA=0.0;ODDS=48.4016;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8481;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.476;Dels=0.0;FS=2.88;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.75;MQ=59.97;MQRankSum=0.67;QD=28.965;ReadPosRankSum=-0.517;SOR=1.3395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.8125:76:0:0:76:2870:-258.422,-20.5946,0.0:76:100:76:0,76:3029,228,0:1:.:1:.:.:.:0.000222528	0/1:119.8125:182:79:2968:103:3894:-301.044,0.0,-217.759:103:57:182:79,103:3773,0,2774:.:1:1:.:.:.:-0.0139302
chr1	155880573	.	C	G	8036.885	REJECT	NS=2;DP=337;DPB=382.0;AC=3;AN=4;AF=0.75;RO=101;AO=281;PRO=0.0;PAO=0.0;QR=3862;QA=10716;PQR=0.0;PQA=0.0;SRF=46;SRR=55;SAF=133;SAR=148;SRP=4.75178;SAP=4.74902;AB=0.65529;ABP=64.3822;RUN=1;RPP=7.84009;RPPR=3.0318;RPL=128.0;RPR=153.0;EPP=3.01803;EPPR=3.0318;DPRA=0.0;ODDS=56.4825;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996441;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.907;Dels=0.0;FS=0.744;HaplotypeScore=6.9932;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.108;QD=26.375;ReadPosRankSum=-0.249;SOR=0.811	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:89:3377:-303.993,-24.1041,0.0:89:100:89:0,89:3717,266,0:1:.:1:.:.:.:0.000222528	0/1:129.501:292:101:3862:192:7339:-580.806,0.0,-268.0:191:65:292:101,191:7319,0,3436:.:1:1:.:.:.:-0.0139302
chr1	156785617	.	G	A	8090.74	REJECT	NS=2;DP=376;DPB=428.0;AC=3;AN=4;AF=0.75;RO=136;AO=292;PRO=0.0;PAO=0.0;QR=5125;QA=11055;PQR=0.0;PQA=0.0;SRF=52;SRR=84;SAF=125;SAR=167;SRP=19.3602;SAP=16.1284;AB=0.581538;ABP=21.7785;RUN=1;RPP=3.27802;RPPR=3.5851;RPL=143.0;RPR=149.0;EPP=8.84055;EPPR=3.07417;DPRA=0.0;ODDS=64.2069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.237;Dels=0.0;FS=0.689;HaplotypeScore=6.8434;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.605;QD=24.9;ReadPosRankSum=0.424;SOR=0.711	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.858:101:0:0:103:3755:-337.544,-27.4587,0.0:101:100:101:0,100:3873,299,0:1:.:1:.:.:.:0.000222528	0/1:119.858:325:136:5125:189:7300:-568.616,0.0,-372.933:189:58:325:136,189:7226,0,4698:.:1:1:.:.:.:-0.0139302
chr1	156830779	.	G	A	1002.82	REJECT	NS=1;DP=78;DPB=78.0;AC=1;AN=4;AF=0.5;RO=39;AO=39;PRO=0.0;PAO=0.0;QR=1436;QA=1418;PQR=0.0;PQA=0.0;SRF=27;SRR=12;SAF=26;SAR=13;SRP=15.538;SAP=12.42;AB=0.5;ABP=3.0103;RUN=1;RPP=9.74743;RPPR=15.538;RPL=25.0;RPR=14.0;EPP=3.06598;EPPR=3.06598;DPRA=0.0;ODDS=230.908;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.974359;technology.ILLUMINA=1.0;BaseQRankSum=-0.369;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.231;QD=15.72;ReadPosRankSum=1.003;SOR=0.583;ClippingRankSum=-0.462	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:39:1436:39:1418:-106.576,0.0,-108.173:38:50:77:38,38:1223,0,1210:1:.:1:.:.:.:0.000222528	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	156842336	.	C	T	8197.17	REJECT	NS=2;DP=316;DPB=366.0;AC=2;AN=4;AF=0.5;RO=93;AO=273;PRO=0.0;PAO=0.0;QR=3357;QA=10292;PQR=0.0;PQA=0.0;SRF=37;SRR=56;SAF=124;SAR=149;SRP=11.4393;SAP=7.98162;AB=0.745902;ABP=195.239;RUN=1;RPP=5.88173;RPPR=3.22044;RPL=146.0;RPR=127.0;EPP=3.97275;EPPR=3.59403;DPRA=0.0;ODDS=127.603;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992674;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1855;Dels=0.0;FS=0.6965;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.433;QD=24.455;ReadPosRankSum=0.6415;SOR=0.656;ClippingRankSum=0.333	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2625:95:55:1926:44:1684:-124.827,0.0,-146.545:43:45:95:50,42:1503,0,1681:1:.:1:.:.:.:0.000222528	0/1:121.2625:266:38:1431:229:8608:-702.019,0.0,-56.4324:228:86:266:38,228:8773,0,791:.:1:1:.:.:.:-0.0139302
chr1	156842471	.	C	T	152.124	REJECT	NS=2;DP=133;DPB=175.19;AC=2;AN=2;AF=0.0;RO=68;AO=10;PRO=27.2167;PAO=5.05;QR=2411;QA=136;PQR=914.467;PQA=133.8;SRF=22;SRR=46;SAF=1;SAR=9;SRP=21.4039;SAP=16.9077;AB=0.075188;ABP=211.488;RUN=1;RPP=6.48466;RPPR=28.0461;RPL=3.0;RPR=7.0;EPP=10.8276;EPPR=7.60871;DPRA=0.0;ODDS=0.836863;GTI=1;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=51.2;MQMR=58.8676;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.56084:36:17:585:4:46:-3.48739,-15.892,-177.554:4:13:31:.:.:1:.:.:.:-2.19428	./1:130.308:97:51:1826:6:90:-17.2975,-62.9569,-614.409:6:8:79:.:.:1:.:.:.:-0.0139302
chr1	156842471	.	C	CT	152.124	REJECT	NS=2;DP=133;DPB=175.19;AC=2;AN=2;AF=0.0;RO=68;AO=12;PRO=27.2167;PAO=17.2167;QR=2411;QA=267;PQR=914.467;PQA=569.467;SRF=22;SRR=46;SAF=4;SAR=8;SRP=21.4039;SAP=5.9056;AB=0.0902256;ABP=196.99;RUN=1;RPP=5.9056;RPPR=28.0461;RPL=8.0;RPR=4.0;EPP=5.9056;EPPR=7.60871;DPRA=0.0;ODDS=0.836863;GTI=1;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=54.8333;MQMR=58.8676;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.56084:36:17:585:4:76:-3.48739,-2.87594,-56.0893:4:13:31:.:.:1:.:.:.:-2.19428	./1:130.308:97:51:1826:8:191:-17.2975,-18.2597,-188.624:8:10:79:.:.:1:.:.:.:-0.0139302
chr1	156842471	.	CT	C	152.124	REJECT	NS=2;DP=133;DPB=175.19;AC=2;AN=3;AF=0.25;RO=68;AO=14;PRO=27.2167;PAO=20.2167;QR=2411;QA=387;PQR=914.467;PQA=656.467;SRF=22;SRR=46;SAF=6;SAR=8;SRP=21.4039;SAP=3.63072;AB=0.105263;ABP=183.014;RUN=1;RPP=8.59409;RPPR=28.0461;RPL=10.0;RPR=4.0;EPP=8.59409;EPPR=7.60871;DPRA=0.0;ODDS=0.836863;GTI=1;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=58.8676;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.56084:36:17:585:3:69:-3.48739,-0.263256,-53.4639:3:10:31:.:.:1:.:.:.:-2.19428	0/1:130.308:97:51:1826:11:318:-17.2975,0.0,-191.514:11:14:79:.:.:1:.:.:.:-0.0139302
chr1	156842471	.	CTT	C	152.124	REJECT	NS=2;DP=133;DPB=175.19;AC=2;AN=3;AF=0.25;RO=68;AO=6;PRO=27.2167;PAO=15.3;QR=2411;QA=201;PQR=914.467;PQA=479.8;SRF=22;SRR=46;SAF=3;SAR=3;SRP=21.4039;SAP=3.0103;AB=0.0451128;ABP=242.052;RUN=1;RPP=4.45795;RPPR=28.0461;RPL=4.0;RPR=2.0;EPP=3.0103;EPPR=7.60871;DPRA=0.0;ODDS=0.836863;GTI=1;TYPE=del;CIGAR=1M2D18M;NUMALT=4;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=58.8676;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:1.56084:36:17:585:3:112:-3.48739,0.0,-70.7641:3:10:31:.:.:1:.:.:.:-2.19428	./1:130.308:97:51:1826:3:89:-17.2975,-29.1668,-259.167:3:4:79:.:.:1:.:.:.:-0.0139302
chr1	156842810	.	A	AGT	273.813	REJECT	NS=2;DP=29;DPB=59.7143;AC=2;AN=3;AF=0.5;RO=1;AO=7;PRO=16.6667;PAO=17.1667;QR=36;QA=235;PQR=556.583;PQA=570.083;SRF=1;SRR=0;SAF=7;SAR=0;SRP=5.18177;SAP=18.2106;AB=0.269231;ABP=15.0369;RUN=1;RPP=3.32051;RPPR=5.18177;RPL=4.0;RPR=3.0;EPP=3.32051;EPPR=5.18177;DPRA=0.0;ODDS=0.0;GTI=0;TYPE=ins;CIGAR=1M2I48M;NUMALT=3;MEANALT=11.0;LEN=2;MQM=61.4286;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.67;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.72;MQRankSum=0.553;QD=9.38;RPA=22;RU=GT;ReadPosRankSum=-0.262;SOR=1.708;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:1.22903:3:0:0:0:0:0.0,0.0,0.0:0:0:0:.:.:.:.:1:.:.:.:-2.19428	./1:84.03015:40:1:36:7:235:-33.4231,-10.0908,-10.6241:8:38:21:8,9:544,101,197:.:1:1:.:.:.:-0.0139302
chr1	156842810	.	A	AGTGT	273.813	REJECT	NS=2;DP=29;DPB=59.7143;AC=2;AN=2;AF=0.25;RO=1;AO=6;PRO=16.6667;PAO=17.1667;QR=36;QA=157;PQR=556.583;PQA=570.083;SRF=1;SRR=0;SAF=6;SAR=0;SRP=5.18177;SAP=16.0391;AB=0.230769;ABP=19.3799;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=0.0;GTI=0;TYPE=ins;CIGAR=1M4I48M;NUMALT=3;MEANALT=11.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.67;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.72;MQRankSum=0.553;QD=9.38;RPA=22;RU=GT;ReadPosRankSum=-0.262;SOR=1.708;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.22903:3:0:0:0:0:0.0,0.0,0.0:0:0:0:.:.:.:.:1:.:.:.:-2.19428	./1:84.03015:40:1:36:6:157:-33.4231,-16.8469,-17.6717:7:33:21:8,8:544,141,437:.:1:1:.:.:.:-0.0139302
chr1	156842810	.	A	AGTGTGTGT	208.73	PASS	DP=9;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.88;QD=23.19;SOR=3.258	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,5:5:15.0:193,15,0:5:100:5:1:.:.:.:.:.:-2.19428	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0139302
chr1	156842810	.	AGTGT	A	273.813	REJECT	NS=2;DP=29;DPB=59.7143;AC=1;AN=3;AF=0.0;RO=1;AO=3;PRO=16.6667;PAO=13.0;QR=36;QA=102;PQR=556.583;PQA=438.25;SRF=1;SRR=0;SAF=3;SAR=0;SRP=5.18177;SAP=9.52472;AB=0.115385;ABP=36.4176;RUN=1;RPP=9.52472;RPPR=5.18177;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=5.18177;DPRA=0.0;ODDS=0.0;GTI=0;TYPE=del;CIGAR=1M4D44M;NUMALT=3;MEANALT=11.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.22903:3:0:0:0:0:0.0,-1.63583,-17.1306:0:0:0:.:.:1:.:.:.:-2.19428	0/0:69.0603:26:1:36:3:102:-33.4231,-32.6367,-105.959:3:18:17:.:.:.:.:.:.:-0.0139302
chr1	156845492	.	A	AGT	1870.6	REJECT	NS=2;DP=169;DPB=297.105;AC=2;AN=2;AF=0.5;RO=17;AO=42;PRO=41.1167;PAO=41.45;QR=627;QA=1271;PQR=1481.88;PQA=1493.55;SRF=8;SRR=9;SAF=22;SAR=20;SRP=3.13803;SAP=3.21711;AB=0.248521;ABP=95.844;RUN=1;RPP=3.0103;RPPR=3.13803;RPL=21.0;RPR=21.0;EPP=3.83753;EPPR=4.1599;DPRA=0.0;ODDS=2.0948;GTI=0;TYPE=ins;CIGAR=1M2I37M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.06;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.765;QD=9.56;RPA=18;RU=GT;ReadPosRankSum=-0.564;SOR=0.625;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.60177:44:3:106:8:258:-41.2113,-20.9555,-27.532:8:21:39:.:.:.:.:1:.:.:.:-0.000113809	./1:119.106:178:14:521:34:1013:-154.096,-67.3021,-100.459:61:50:121:15,89:2246,125,766:.:1:1:.:.:.:-0.0139302
chr1	156845492	.	A	AGTGT	1870.6	REJECT	SOMATIC;NS=2;DP=169;DPB=297.105;AC=1;AN=3;AF=0.25;RO=17;AO=54;PRO=41.1167;PAO=41.45;QR=627;QA=1605;PQR=1481.88;PQA=1493.55;SRF=8;SRR=9;SAF=25;SAR=29;SRP=3.13803;SAP=3.6537;AB=0.319527;ABP=50.8212;RUN=1;RPP=8.80089;RPPR=3.13803;RPL=21.0;RPR=33.0;EPP=3.17115;EPPR=4.1599;DPRA=0.0;ODDS=2.0948;GTI=0;TYPE=ins;CIGAR=1M4I37M;NUMALT=5;MEANALT=11.5;LEN=4;MQM=59.6296;MQMR=60.0;PAIRED=0.981481;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:9.60177:44:3:106:7:246:-41.2113,-21.7705,-28.6064:7:18:39:.:.:.:.:.:.:-0.000113809	./1:139.212:125:14:521:47:1359:-154.096,-39.6788,-69.3454:47:41:116:.:.:1:.:.:.:-0.0139302
chr1	156845492	.	A	AGTGTGT	1870.6	REJECT	NS=2;DP=169;DPB=297.105;AC=0;AN=4;AF=0.0;RO=17;AO=3;PRO=41.1167;PAO=41.45;QR=627;QA=47;PQR=1481.88;PQA=1493.55;SRF=8;SRR=9;SAF=1;SAR=2;SRP=3.13803;SAP=3.73412;AB=0.0177515;ABP=344.394;RUN=1;RPP=3.73412;RPPR=3.13803;RPL=2.0;RPR=1.0;EPP=9.52472;EPPR=4.1599;DPRA=0.0;ODDS=2.0948;GTI=0;TYPE=ins;CIGAR=1M6I37M;NUMALT=5;MEANALT=11.5;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:9.60177:44:3:106:2:32:-41.2113,-39.6836,-47.894:2:5:39:.:.:.:.:.:.:-0.000113809	0/0:139.212:125:14:521:1:15:-154.096,-148.169,-190.179:1:1:116:.:.:.:.:.:.:-0.0139302
chr1	156845492	.	AGT	A	1870.6	REJECT	NS=2;DP=169;DPB=297.105;AC=2;AN=2;AF=0.375;RO=17;AO=27;PRO=41.1167;PAO=36.3667;QR=627;QA=842;PQR=1481.88;PQA=1309.63;SRF=8;SRR=9;SAF=11;SAR=16;SRP=3.13803;SAP=5.02092;AB=0.159763;ABP=172.938;RUN=1;RPP=3.73412;RPPR=3.13803;RPL=15.0;RPR=12.0;EPP=3.73412;EPPR=4.1599;DPRA=0.0;ODDS=2.0948;GTI=0;TYPE=del;CIGAR=1M2D35M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.003;FS=0.5145;MLEAC=1;MLEAF=0.5;MQ=59.915;MQRankSum=-1.08;QD=10.905;RPA=18;RU=GT;ReadPosRankSum=-0.3815;SOR=1.182;STR;ClippingRankSum=1.395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.300885:40:3:106:14:432:-41.2113,-12.3362,-78.5168:18:49:38:14,23:495,0,147:1:.:1:.:.:.:-0.000113809	./1:119.106:178:14:521:13:410:-154.096,-140.87,-395.48:17:14:121:15,22:2246,1950,2147483647:.:1:.:.:.:.:-0.0139302
chr1	156845492	.	AGTGT	A	1870.6	REJECT	NS=2;DP=169;DPB=297.105;AC=0;AN=4;AF=0.0;RO=17;AO=12;PRO=41.1167;PAO=32.1667;QR=627;QA=352;PQR=1481.88;PQA=1158.83;SRF=8;SRR=9;SAF=6;SAR=6;SRP=3.13803;SAP=3.0103;AB=0.0710059;ABP=273.159;RUN=1;RPP=5.9056;RPPR=3.13803;RPL=8.0;RPR=4.0;EPP=5.9056;EPPR=4.1599;DPRA=0.0;ODDS=2.0948;GTI=0;TYPE=del;CIGAR=1M4D33M;NUMALT=5;MEANALT=11.5;LEN=4;MQM=58.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:9.60177:44:3:106:5:152:-41.2113,-41.8906,-180.709:5:13:39:.:.:.:.:.:.:-0.000113809	0/0:139.212:125:14:521:7:200:-154.096,-176.188,-594.599:7:6:116:.:.:.:.:.:.:-0.0139302
chr1	156845774	.	C	T	5236.57	REJECT	NS=2;DP=334;DPB=382.0;AC=2;AN=4;AF=0.5;RO=197;AO=185;PRO=0.0;PAO=0.0;QR=7587;QA=7050;PQR=0.0;PQA=0.0;SRF=107;SRR=90;SAF=107;SAR=78;SRP=6.19586;SAP=12.8817;AB=0.484293;ABP=3.82887;RUN=1;RPP=3.96105;RPPR=3.55041;RPL=88.0;RPR=97.0;EPP=3.30374;EPPR=3.02132;DPRA=0.0;ODDS=258.835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994924;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5725;Dels=0.0;FS=1.583;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6055;QD=16.72;ReadPosRankSum=0.3745;SOR=0.8635;ClippingRankSum=1.328	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:53:2021:42:1547:-113.529,0.0,-156.19:41:44:93:51,41:1412,0,1824:1:.:1:.:.:.:-0.000113809	0/1:129.501:286:144:5566:143:5503:-417.235,0.0,-422.912:143:50:286:143,143:5292,0,5336:.:1:1:.:.:.:-0.0139302
chr1	156846233	.	G	A	919.727	REJECT	NS=1;DP=95;DPB=95.0;AC=1;AN=4;AF=0.5;RO=58;AO=37;PRO=0.0;PAO=0.0;QR=2236;QA=1373;PQR=0.0;PQA=0.0;SRF=37;SRR=21;SAF=17;SAR=20;SRP=12.5947;SAP=3.5385;AB=0.389474;ABP=13.0905;RUN=1;RPP=7.76406;RPPR=3.60933;RPL=14.0;RPR=23.0;EPP=10.1116;EPPR=4.35811;DPRA=0.0;ODDS=211.775;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.319;FS=8.842;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.097;QD=11.76;ReadPosRankSum=2.091;SOR=0.553;ClippingRankSum=0.257	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:58:2236:37:1373:-97.8479,0.0,-175.55:36:38:93:57,35:1110,0,2114:1:.:1:.:.:.:-0.000113809	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	156848995	.	C	T	8687.99	REJECT	NS=2;DP=332;DPB=379.0;AC=2;AN=4;AF=0.5;RO=95;AO=284;PRO=0.0;PAO=0.0;QR=3622;QA=10908;PQR=0.0;PQA=0.0;SRF=50;SRR=45;SAF=152;SAR=132;SRP=3.58174;SAP=6.06871;AB=0.74934;ABP=207.673;RUN=1;RPP=5.48761;RPPR=3.21602;RPL=151.0;RPR=133.0;EPP=36.3164;EPPR=4.86177;DPRA=0.0;ODDS=141.406;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989437;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.697;Dels=0.0;FS=3.7425;HaplotypeScore=7.9983;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.143;QD=24.25;ReadPosRankSum=0.8545;SOR=0.9785;ClippingRankSum=-0.666	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4325:93:54:2070:39:1499:-109.727,0.0,-161.137:39:42:93:54,39:1405,0,1929:1:.:1:.:.:.:-0.000113809	0/1:118.4325:285:41:1552:245:9409:-769.25,0.0,-62.1312:244:86:285:41,244:9632,0,895:.:1:1:.:.:.:-0.0139302
chr1	158582646	.	T	C	2631.67	PASS	SOMATIC;NS=2;DP=420;DPB=420.0;AC=1;AN=3;AF=0.25;RO=316;AO=104;PRO=0.0;PAO=0.0;QR=12186;QA=3928;PQR=0.0;PQA=0.0;SRF=156;SRR=160;SAF=47;SAR=57;SRP=3.12025;SAP=5.09825;AB=0.333333;ABP=78.288;RUN=1;RPP=5.09825;RPPR=38.6334;RPL=57.0;RPR=47.0;EPP=3.34437;EPPR=3.45009;DPRA=2.88889;ODDS=68.4063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.990506;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.554;Dels=0.0;FS=4.735;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.082;QD=10.98;ReadPosRankSum=1.756;SOR=0.903	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:151.949:108:108:4176:0:0:0.0,-29.2825,-375.872:0:0:108:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:125.4745:310:208:8010:104:3928:-268.812,0.0,-635.959:103:33:310:200,99:38.0:0.332:2:3432,0,7996:.:1:1:.:.:1:-0.0139302
chr1	158584091	.	A	G	2014.84	PASS	SOMATIC;NS=2;DP=399;DPB=399.0;AC=1;AN=3;AF=0.25;RO=302;AO=96;PRO=0.0;PAO=0.0;QR=10238;QA=3226;PQR=0.0;PQA=0.0;SRF=94;SRR=208;SAF=33;SAR=63;SRP=96.4555;SAP=23.3679;AB=0.33218;ABP=73.7071;RUN=1;RPP=12.0581;RPPR=66.5438;RPL=58.0;RPR=38.0;EPP=29.1584;EPPR=4.4196;DPRA=2.62727;ODDS=67.7887;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.3125;MQMR=60.0993;PAIRED=0.979167;PAIREDR=0.990066;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.707;Dels=0.0;FS=2.386;HaplotypeScore=32.6789;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=-0.846;QD=9.68;ReadPosRankSum=-1.349;SOR=0.524	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.174:108:109:3644:0:0:0.0,-29.0143,-327.533:0:0:107:105,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:121.087:287:193:6594:96:3226:-212.224,0.0,-515.103:95:33:287:185,89:34.0:0.317:2:2806,0,6153:.:1:1:.:.:1:-0.0139302
chr1	158584103	.	G	A	953.838	REJECT	NS=2;DP=241;DPB=291.2;AC=2;AN=2;AF=0.0;RO=124;AO=6;PRO=40.25;PAO=5.75;QR=4641;QA=84;PQR=1438.58;PQA=217.417;SRF=22;SRR=102;SAF=0;SAR=6;SRP=115.086;SAP=16.0391;AB=0.0248963;ABP=475.517;RUN=1;RPP=4.45795;RPPR=10.015;RPL=2.0;RPR=4.0;EPP=4.45795;EPPR=7.49334;DPRA=0.0;ODDS=1.85295;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991935;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.67014:73:52:1929:4:56:-1.29102,-24.9866,-329.77:4:6:68:.:.:1:.:.:.:-0.000113809	./1:132.747:168:72:2712:2:28:-107.247,-165.714,-890.176:2:1:142:.:.:1:.:.:.:-0.0139302
chr1	158584103	.	G	GA	953.838	REJECT	NS=2;DP=241;DPB=291.2;AC=2;AN=4;AF=0.5;RO=124;AO=59;PRO=40.25;PAO=36.75;QR=4641;QA=1615;PQR=1438.58;PQA=1268.58;SRF=22;SRR=102;SAF=8;SAR=51;SRP=115.086;SAP=71.062;AB=0.244813;ABP=139.327;RUN=1;RPP=3.93042;RPPR=10.015;RPL=32.0;RPR=27.0;EPP=7.46366;EPPR=7.49334;DPRA=0.0;ODDS=1.85295;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.966102;PAIREDR=0.991935;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.393;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=-1.005;QD=4.81;RPA=12,13;RU=A;ReadPosRankSum=-0.198;SOR=0.645;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8.67014:73:52:1929:7:204:-1.29102,0.0,-169.602:7:10:68:.:.:.:.:1:.:.:.:-0.000113809	0/1:115.8735:203:72:2712:52:1411:-107.247,0.0,-221.443:63:40:158:99,75:1182,0,1762:.:1:1:.:.:.:-0.0139302
chr1	158584103	.	GA	G	953.838	REJECT	NS=2;DP=241;DPB=291.2;AC=2;AN=2;AF=0.0;RO=124;AO=21;PRO=40.25;PAO=28.25;QR=4641;QA=730;PQR=1438.58;PQA=990.417;SRF=22;SRR=102;SAF=6;SAR=15;SRP=115.086;SAP=11.386;AB=0.0871369;ABP=359.826;RUN=1;RPP=3.94093;RPPR=10.015;RPL=12.0;RPR=9.0;EPP=3.94093;EPPR=7.49334;DPRA=0.0;ODDS=1.85295;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.952381;PAIREDR=0.991935;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.67014:73:52:1929:5:183:-1.29102,-2.4379,-185.342:5:7:68:.:.:1:.:.:.:-0.000113809	./1:132.747:168:72:2712:16:547:-107.247,-83.6156,-394.559:16:11:142:.:.:1:.:.:.:-0.0139302
chr1	158587390	.	C	T	2440.06	PASS	SOMATIC;NS=2;DP=399;DPB=399.0;AC=1;AN=3;AF=0.25;RO=303;AO=96;PRO=0.0;PAO=0.0;QR=11720;QA=3685;PQR=0.0;PQA=0.0;SRF=137;SRR=166;SAF=39;SAR=57;SRP=9.03739;SAP=10.339;AB=0.335664;ABP=70.0982;RUN=1;RPP=39.2015;RPPR=18.8413;RPL=68.0;RPR=28.0;EPP=7.44372;EPPR=24.6892;DPRA=2.53097;ODDS=71.4966;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.954;Dels=0.0;FS=3.502;HaplotypeScore=7.8126;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.732;QD=11.45;ReadPosRankSum=-1.821;SOR=0.968	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.612:110:113:4357:0:0:0.0,-30.6246,-392.131:0:0:110:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:118.806:284:190:7363:96:3685:-254.013,0.0,-584.799:96:34:284:182,93:38.0:0.338:2:3279,0,7279:.:1:1:.:.:1:-0.0139302
chr1	158587784	.	T	G	10679.65	REJECT	NS=2;DP=283;DPB=328.0;AC=4;AN=4;AF=1.0;RO=0;AO=327;PRO=0.0;PAO=0.0;QR=0;QA=12507;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=219;SAR=108;SRP=0.0;SAP=84.829;AB=0.0;ABP=0.0;RUN=1;RPP=40.3636;RPPR=0.0;RPL=126.0;RPR=201.0;EPP=12.1013;EPPR=0.0;DPRA=0.0;ODDS=58.5937;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990826;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9638;MLEAC=2;MLEAF=1.0;MQ=60.025;QD=31.595;SOR=1.5085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.1465:85:0:0:87:3246:-292.238,-23.5718,0.0:85:100:85:0,84:3506,252,0:1:.:1:.:.:.:-0.000113809	1/1:122.1465:240:0:0:240:9261:-833.06,-65.0083,0.0:239:100:239:0,238:10305,710,0:.:1:1:.:.:.:-0.0139302
chr1	158587858	.	G	A	2959.25	PASS	SOMATIC;NS=2;DP=421;DPB=421.0;AC=1;AN=3;AF=0.25;RO=309;AO=112;PRO=0.0;PAO=0.0;QR=11711;QA=4319;PQR=0.0;PQA=0.0;SRF=139;SRR=170;SAF=46;SAR=66;SRP=9.76365;SAP=10.7656;AB=0.365132;ABP=51.0398;RUN=1;RPP=3.0103;RPPR=3.86062;RPL=56.0;RPR=56.0;EPP=34.0313;EPPR=18.5339;DPRA=0.0;ODDS=71.487;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987055;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.363;Dels=0.0;FS=3.245;HaplotypeScore=6.848;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.295;QD=12.95;ReadPosRankSum=-0.866;SOR=0.882	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.233:113:116:4349:1:14:0.0,-30.4165,-390.134:1:1:113:108,1:.:0.009174:0:.:.:.:0:.:.:0:-0.000113809	0/1:119.6165:303:193:7362:111:4305:-304.882,0.0,-579.855:111:37:303:186,107:38.0:0.366:2:3952,0,7295:.:1:1:.:.:1:-0.0139302
chr1	158592935	.	G	A	3132.66	PASS	SOMATIC;NS=2;DP=404;DPB=404.0;AC=1;AN=3;AF=0.25;RO=287;AO=117;PRO=0.0;PAO=0.0;QR=11156;QA=4484;PQR=0.0;PQA=0.0;SRF=121;SRR=166;SAF=54;SAR=63;SRP=18.3317;SAP=4.51363;AB=0.386139;ABP=37.1304;RUN=1;RPP=18.6189;RPPR=10.2813;RPL=73.0;RPR=44.0;EPP=12.8283;EPPR=14.5183;DPRA=3.0;ODDS=64.0392;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986063;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.062;Dels=0.0;FS=0.901;HaplotypeScore=3.9131;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.34;QD=13.49;ReadPosRankSum=-1.309;SOR=0.622	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:148.243:97:101:3884:0:0:0.0,-27.3859,-349.623:0:0:97:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:123.6215:302:186:7272:117:4484:-321.233,0.0,-571.991:117:39:302:180,110:38.0:0.371:2:4102,0,7194:.:1:1:.:.:1:-0.0139302
chr1	158597507	.	G	C	2065.9	PASS	SOMATIC;NS=2;DP=313;DPB=313.0;AC=1;AN=3;AF=0.25;RO=230;AO=83;PRO=0.0;PAO=0.0;QR=8830;QA=3096;PQR=0.0;PQA=0.0;SRF=73;SRR=157;SAF=21;SAR=62;SRP=69.6273;SAP=46.9892;AB=0.367257;ABP=37.6001;RUN=1;RPP=12.4549;RPPR=18.1162;RPL=51.0;RPR=32.0;EPP=5.12945;EPPR=11.5074;DPRA=2.5977;ODDS=55.3119;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.801;Dels=0.0;FS=4.432;HaplotypeScore=4.9322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.879;QD=11.99;ReadPosRankSum=-0.639;SOR=1.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.461:84:87:3391:0:0:0.0,-23.5957,-305.286:0:0:84:82,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:119.7305:224:143:5439:83:3096:-217.329,0.0,-428.107:82:37:224:137,79:37.0:0.368:2:2715,0,5385:.:1:1:.:.:1:-0.0139302
chr1	158606449	.	G	T	2842.96	PASS	SOMATIC;NS=2;DP=399;DPB=399.0;AC=1;AN=3;AF=0.25;RO=290;AO=109;PRO=0.0;PAO=0.0;QR=10845;QA=4187;PQR=0.0;PQA=0.0;SRF=185;SRR=105;SAF=78;SAR=31;SRP=50.9324;SAP=47.0175;AB=0.360927;ABP=53.7451;RUN=1;RPP=3.98647;RPPR=9.74935;RPL=51.0;RPR=58.0;EPP=10.2021;EPPR=20.2623;DPRA=3.1134;ODDS=60.549;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8724;PAIRED=0.981651;PAIREDR=0.989655;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.086;Dels=0.0;FS=10.971;HaplotypeScore=7.8645;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.445;QD=12.33;ReadPosRankSum=0.839;SOR=1.231	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:97:3556:0:0:0.0,-25.8701,-319.703:0:0:93:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:301:193:7289:109:4187:-294.841,0.0,-573.85:108:36:301:183,106:38.0:0.375:2:3739,0,7203:.:1:1:.:.:1:-0.0139302
chr1	158607788	.	T	G	6188.08	REJECT	NS=2;DP=175;DPB=198.0;AC=4;AN=4;AF=1.0;RO=0;AO=198;PRO=0.0;PAO=0.0;QR=0;QA=7243;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=148;SAR=50;SRP=0.0;SAP=108.338;AB=0.0;ABP=0.0;RUN=1;RPP=145.538;RPPR=0.0;RPL=42.0;RPR=156.0;EPP=30.4279;EPPR=0.0;DPRA=0.0;ODDS=32.3067;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989899;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.585;SOR=2.213	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.8145:44:0:0:45:1603:-144.44,-12.1556,0.0:44:100:44:0,44:1687,130,0:1:.:1:.:.:.:-0.000113809	1/1:121.2865:153:0:0:153:5640:-507.428,-41.3708,0.0:153:100:153:0,153:6211,436,0:.:1:1:.:.:.:-0.0139302
chr1	158612236	.	A	G	2721.41	PASS	SOMATIC;NS=2;DP=376;DPB=376.0;AC=1;AN=3;AF=0.25;RO=273;AO=103;PRO=0.0;PAO=0.0;QR=10586;QA=3908;PQR=0.0;PQA=0.0;SRF=165;SRR=108;SAF=66;SAR=37;SRP=28.8532;SAP=20.7405;AB=0.387218;ABP=32.3986;RUN=1;RPP=5.56125;RPPR=3.08189;RPL=46.0;RPR=57.0;EPP=4.04333;EPPR=34.5802;DPRA=2.41818;ODDS=69.6557;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989011;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.566;Dels=0.0;FS=3.594;HaplotypeScore=8.8028;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.335;QD=13.31;ReadPosRankSum=0.687;SOR=0.989	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:107:110:4277:0:0:0.0,-29.8251,-384.95:0:0:107:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:266:163:6309:103:3908:-279.468,0.0,-495.468:103:39:266:157,101:38.0:0.394:2:3568,0,6277:.:1:1:.:.:1:-0.0139302
chr1	158612756	.	G	A	2247.86	PASS	SOMATIC;NS=2;DP=344;DPB=344.0;AC=1;AN=3;AF=0.25;RO=257;AO=87;PRO=0.0;PAO=0.0;QR=9611;QA=3351;PQR=0.0;PQA=0.0;SRF=89;SRR=168;SAF=28;SAR=59;SRP=55.7424;SAP=26.9963;AB=0.349398;ABP=52.0646;RUN=1;RPP=24.0012;RPPR=4.03267;RPL=58.0;RPR=29.0;EPP=3.23494;EPPR=40.9392;DPRA=2.62105;ODDS=60.2484;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992218;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.513;Dels=0.0;FS=0.0;HaplotypeScore=7.8629;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7;QD=12.03;ReadPosRankSum=-0.09;SOR=0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:95:3551:0:0:0.0,-25.7396,-319.676:0:0:93:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:248:162:6060:87:3351:-234.428,0.0,-477.688:87:35:248:153,84:38.0:0.36:2:3011,0,5903:.:1:1:.:.:1:-0.0139302
chr1	158614198	.	C	T	1781.75	PASS	SOMATIC;NS=2;DP=315;DPB=315.0;AC=1;AN=3;AF=0.25;RO=244;AO=71;PRO=0.0;PAO=0.0;QR=9129;QA=2752;PQR=0.0;PQA=0.0;SRF=78;SRR=166;SAF=29;SAR=42;SRP=71.9279;SAP=8.17902;AB=0.306034;ABP=78.8246;RUN=1;RPP=11.8491;RPPR=12.1234;RPL=44.0;RPR=27.0;EPP=5.48761;EPPR=3.57987;DPRA=2.79518;ODDS=52.7212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.295;Dels=0.0;FS=7.574;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.359;QD=10.28;ReadPosRankSum=-1.174;SOR=0.338	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:82:83:3104:0:0:0.0,-22.4706,-279.434:0:0:82:81,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:232:161:6025:71:2752:-184.763,0.0,-479.158:71:31:232:158,68:38.0:0.299:2:2413,0,5970:.:1:1:.:.:1:-0.0139302
chr1	158618480	.	A	T	1503.76	PASS	SOMATIC;NS=2;DP=241;DPB=241.0;AC=1;AN=3;AF=0.25;RO=178;AO=63;PRO=0.0;PAO=0.0;QR=6601;QA=2450;PQR=0.0;PQA=0.0;SRF=59;SRR=119;SAF=13;SAR=50;SRP=46.9277;SAP=50.1967;AB=0.355932;ABP=34.9199;RUN=1;RPP=92.6611;RPPR=196.686;RPL=57.0;RPR=6.0;EPP=24.5527;EPPR=22.5292;DPRA=2.76562;ODDS=40.9144;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984127;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.711;Dels=0.0;FS=17.531;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.645;QD=12.46;ReadPosRankSum=-1.083;SOR=1.968	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:63:64:2361:0:0:0.0,-17.3429,-212.665:0:0:63:63,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:177:114:4240:63:2450:-172.506,0.0,-333.533:63:36:177:111,62:38.0:0.363:2:2233,0,4162:.:1:1:.:.:1:-0.0139302
chr1	158619728	.	A	C	3482.57	REJECT	NS=1;DP=102;DPB=102.0;AC=2;AN=4;AF=1.0;RO=0;AO=102;PRO=0.0;PAO=0.0;QR=0;QA=3921;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=42;SAR=60;SRP=0.0;SAP=9.90792;AB=0.0;ABP=0.0;RUN=1;RPP=4.37279;RPPR=0.0;RPL=55.0;RPR=47.0;EPP=8.46027;EPPR=0.0;DPRA=0.0;ODDS=68.2658;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990196;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=35.25;SOR=1.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3235:100:0:0:102:3921:-352.93,-27.6474,0.0:100:100:100:0,99:4072,297,0:1:.:1:.:.:.:-0.000113809	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	158637865	.	G	A	892.998	REJECT	NS=2;DP=129;DPB=182.04;AC=2;AN=2;AF=0.0;RO=41;AO=5;PRO=36.8333;PAO=3.0;QR=1510;QA=70;PQR=1314.67;PQA=42.0;SRF=10;SRR=31;SAF=0;SAR=5;SRP=26.3669;SAP=13.8677;AB=0.0510204;ABP=174.601;RUN=1;RPP=6.91895;RPPR=4.33437;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=9.41879;DPRA=0.0;ODDS=14.6363;GTI=0;TYPE=snp;CIGAR=1X24M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.5648:31:12:453:0:0:-15.5715,-35.7334,-261.889:0:0:27:.:.:1:.:.:.:-0.000113809	./1:137.518:98:29:1057:5:70:-84.6171,-149.501,-937.76:5:5:92:.:.:1:.:.:.:-0.0139302
chr1	158637865	.	G	T	892.998	REJECT	NS=2;DP=129;DPB=182.04;AC=2;AN=2;AF=0.0;RO=41;AO=4;PRO=36.8333;PAO=0.0;QR=1510;QA=64;PQR=1314.67;PQA=0.0;SRF=10;SRR=31;SAF=0;SAR=4;SRP=26.3669;SAP=11.6962;AB=0.0310078;ABP=249.464;RUN=1;RPP=3.0103;RPPR=4.33437;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=9.41879;DPRA=0.0;ODDS=14.6363;GTI=0;TYPE=snp;CIGAR=1X24M;NUMALT=5;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.5648:31:12:453:2:32:-15.5715,-34.3807,-260.269:2:7:27:.:.:1:.:.:.:-0.000113809	./1:137.518:98:29:1057:2:32:-84.6171,-154.088,-943.611:2:2:92:.:.:1:.:.:.:-0.0139302
chr1	158637865	.	G	GA	892.998	REJECT	NS=2;DP=129;DPB=182.04;AC=2;AN=3;AF=0.25;RO=41;AO=14;PRO=36.8333;PAO=28.8333;QR=1510;QA=328;PQR=1314.67;PQA=951.667;SRF=10;SRR=31;SAF=3;SAR=11;SRP=26.3669;SAP=12.937;AB=0.108527;ABP=174.725;RUN=1;RPP=3.0103;RPPR=4.33437;RPL=7.0;RPR=7.0;EPP=3.63072;EPPR=9.41879;DPRA=0.0;ODDS=14.6363;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=5;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:63.5648:31:12:453:6:178:-15.5715,0.0,-45.6378:6:22:27:.:.:1:.:.:.:-0.000113809	./1:137.518:98:29:1057:8:150:-84.6171,-79.7073,-194.12:8:9:92:.:.:1:.:.:.:-0.0139302
chr1	158637865	.	GA	G	892.998	REJECT	NS=2;DP=129;DPB=182.04;AC=2;AN=3;AF=0.25;RO=41;AO=41;PRO=36.8333;PAO=27.3333;QR=1510;QA=1154;PQR=1314.67;PQA=903.167;SRF=10;SRR=31;SAF=8;SAR=33;SRP=26.3669;SAP=36.112;AB=0.317829;ABP=40.1947;RUN=1;RPP=14.9269;RPPR=4.33437;RPL=28.0;RPR=13.0;EPP=3.06326;EPPR=9.41879;DPRA=0.0;ODDS=14.6363;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=5;MEANALT=9.5;LEN=1;MQM=59.8049;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.33;FS=9.026;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-1.727;QD=4.04;RPA=16,15;RU=A;ReadPosRankSum=0.131;SOR=1.786;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.5648:31:12:453:4:148:-15.5715,-7.5738,-66.9485:4:15:27:.:.:.:.:1:.:.:.:-0.000113809	0/1:118.259:140:29:1057:37:1006:-84.6171,0.0,-148.058:48:44:108:65,59:780,0,878:.:1:1:.:.:.:-0.0139302
chr1	158637865	.	GAA	G	892.998	REJECT	NS=2;DP=129;DPB=182.04;AC=2;AN=2;AF=0.0;RO=41;AO=14;PRO=36.8333;PAO=15.0;QR=1510;QA=319;PQR=1314.67;PQA=532.5;SRF=10;SRR=31;SAF=1;SAR=13;SRP=26.3669;SAP=25.3454;AB=0.108527;ABP=174.725;RUN=1;RPP=3.63072;RPPR=4.33437;RPL=8.0;RPR=6.0;EPP=3.0103;EPPR=9.41879;DPRA=0.0;ODDS=14.6363;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=5;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.5648:31:12:453:3:48:-15.5715,-19.1123,-96.6215:3:11:27:.:.:1:.:.:.:-0.000113809	./1:137.518:98:29:1057:11:271:-84.6171,-84.0672,-317.293:11:12:92:.:.:1:.:.:.:-0.0139302
chr1	158644105	.	T	A	6228.51	REJECT	NS=2;DP=277;DPB=318.0;AC=3;AN=4;AF=0.75;RO=93;AO=225;PRO=0.0;PAO=0.0;QR=3586;QA=8604;PQR=0.0;PQA=0.0;SRF=54;SRR=39;SAF=148;SAR=77;SRP=8.26386;SAP=51.6609;AB=0.609244;ABP=27.6811;RUN=1;RPP=66.3304;RPPR=59.0716;RPL=72.0;RPR=153.0;EPP=7.26639;EPPR=3.03365;DPRA=0.0;ODDS=50.8755;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.081;Dels=0.0;FS=0.827;HaplotypeScore=1.9652;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.277;QD=24.46;ReadPosRankSum=1.403;SOR=1.444	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.3685:80:0:0:80:3023:-272.168,-21.669,0.0:80:100:80:0,80:3292,239,0:1:.:1:.:.:.:-0.000113809	0/1:120.3685:237:93:3586:145:5581:-437.553,0.0,-258.111:145:61:237:92,145:5563,0,3288:.:1:1:.:.:.:-0.0139302
chr1	158647495	.	A	T	11338.15	REJECT	NS=2;DP=298;DPB=354.0;AC=4;AN=4;AF=1.0;RO=0;AO=354;PRO=0.0;PAO=0.0;QR=0;QA=13718;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=229;SAR=125;SRP=0.0;SAP=69.3568;AB=0.0;ABP=0.0;RUN=1;RPP=29.7305;RPPR=0.0;RPL=144.0;RPR=210.0;EPP=14.8859;EPPR=0.0;DPRA=0.0;ODDS=73.5655;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988701;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.485;SOR=1.5905	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:111:4261:-383.495,-30.074,0.0:109:100:109:0,107:4396,321,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:242:0:0:243:9457:-850.65,-65.8227,0.0:242:100:242:0,242:10510,719,0:.:1:1:.:.:.:-0.0139302
chr1	158647522	.	A	G	2909.07	PASS	SOMATIC;NS=2;DP=401;DPB=401.0;AC=1;AN=3;AF=0.25;RO=293;AO=108;PRO=0.0;PAO=0.0;QR=11043;QA=4147;PQR=0.0;PQA=0.0;SRF=168;SRR=125;SAF=60;SAR=48;SRP=16.7136;SAP=5.9056;AB=0.382979;ABP=36.5526;RUN=1;RPP=5.02092;RPPR=6.27863;RPL=49.0;RPR=59.0;EPP=3.09072;EPPR=15.4685;DPRA=2.36975;ODDS=75.1497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981481;PAIREDR=0.993174;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.845;Dels=0.0;FS=1.465;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.659;QD=13.37;ReadPosRankSum=1.693;SOR=0.791	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:115:119:4417:0:0:0.0,-32.2111,-397.515:0:0:115:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:281:174:6626:108:4147:-296.625,0.0,-519.66:108:38:281:167,104:38.0:0.385:2:3785,0,6554:.:1:1:.:.:1:-0.0139302
chr1	158647631	.	T	A	10190.385	REJECT	NS=2;DP=268;DPB=308.0;AC=4;AN=4;AF=1.0;RO=0;AO=308;PRO=0.0;PAO=0.0;QR=0;QA=11814;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=116;SAR=192;SRP=0.0;SAP=43.7325;AB=0.0;ABP=0.0;RUN=1;RPP=31.8881;RPPR=0.0;RPL=186.0;RPR=122.0;EPP=10.2297;EPPR=0.0;DPRA=0.0;ODDS=53.5785;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99026;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.105;SOR=1.482	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:2958:-266.317,-21.3938,0.0:78:100:78:0,77:3202,231,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:228:0:0:229:8856:-796.633,-62.0284,0.0:228:100:228:0,228:9897,680,0:.:1:1:.:.:.:-0.0139302
chr1	158647669	.	T	C	1037.35	PASS	SOMATIC;NS=2;DP=151;DPB=151.0;AC=1;AN=3;AF=0.25;RO=107;AO=44;PRO=0.0;PAO=0.0;QR=4124;QA=1665;PQR=0.0;PQA=0.0;SRF=32;SRR=75;SAF=10;SAR=34;SRP=40.5342;SAP=31.4368;AB=0.427184;ABP=7.75381;RUN=1;RPP=74.2741;RPPR=149.635;RPL=41.0;RPR=3.0;EPP=26.8965;EPPR=15.6941;DPRA=2.14583;ODDS=30.9632;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.143;Dels=0.0;FS=7.015;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.837;QD=14.75;ReadPosRankSum=0.143;SOR=1.44	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:132.571:47:48:1825:0:0:0.0,-13.0212,-164.469:0:0:47:47,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:103:59:2299:44:1665:-121.944,0.0,-179.02:44:43:103:58,44:37.0:0.431:2:1547,0,2273:.:1:1:.:.:1:-0.0139302
chr1	158655036	.	G	A	14908.599999999999	REJECT	NS=2;DP=399;DPB=450.0;AC=4;AN=4;AF=1.0;RO=0;AO=450;PRO=0.0;PAO=0.0;QR=0;QA=16944;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=235;SAR=215;SRP=0.0;SAP=4.9405;AB=0.0;ABP=0.0;RUN=1;RPP=3.18402;RPPR=0.0;RPL=228.0;RPR=222.0;EPP=5.78978;EPPR=0.0;DPRA=0.0;ODDS=65.9733;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988889;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.12;SOR=0.8555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.794:98:0:0:99:3658:-329.231,-26.7768,0.0:98:100:98:0,97:3952,290,0:1:.:1:.:.:.:-0.000113809	1/1:124.794:349:0:0:351:13286:-1194.87,-94.958,0.0:349:100:349:0,348:14652,1014,0:.:1:1:.:.:.:-0.0139302
chr1	158656281	.	T	C	14299.2	REJECT	NS=2;DP=381;DPB=433.0;AC=4;AN=4;AF=1.0;RO=0;AO=433;PRO=0.0;PAO=0.0;QR=0;QA=16387;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=238;SAR=195;SRP=0.0;SAP=12.2829;AB=0.0;ABP=0.0;RUN=1;RPP=3.41651;RPPR=0.0;RPL=221.0;RPR=212.0;EPP=37.5583;EPPR=0.0;DPRA=0.0;ODDS=68.5293;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1894;MQMR=0.0;PAIRED=0.995381;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.175;QD=28.125;SOR=0.9565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:103:3855:-346.975,-27.8868,0.0:102:100:102:0,102:4000,305,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:330:0:0:330:12532:-1127.17,-89.3322,0.0:330:100:330:0,330:13972,972,0:.:1:1:.:.:.:-0.0139302
chr1	158656347	.	C	CAG	5375.04	REJECT	SOMATIC;NS=2;DP=202;DPB=304.174;AC=1;AN=3;AF=0.25;RO=2;AO=23;PRO=39.0;PAO=42.5;QR=78;QA=644;PQR=1418.0;PQA=1549.5;SRF=0;SRR=2;SAF=4;SAR=19;SRP=7.35324;SAP=24.253;AB=0.13245;ABP=180.194;RUN=1;RPP=3.10471;RPPR=3.0103;RPL=12.0;RPR=11.0;EPP=3.10471;EPPR=3.0103;DPRA=0.0;ODDS=7.20129;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=2;MEANALT=5.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.066;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-1.115;QD=34.01;RPA=9;RU=AG;ReadPosRankSum=-0.106;SOR=1.491;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:31.2812:51:0:0:3:118:-153.919,-137.622,-136.266:3:6:49:.:.:.:.:.:.:.:.:-0.000113809	./1:65.19335:200:2:78:20:526:-411.98,-333.52,-331.423:20:13:146:2,20:8540,5247,4859:.:1:1:.:.:.:-0.0139302
chr1	158656347	.	C	CAGAG	5375.04	REJECT	NS=2;DP=202;DPB=304.174;AC=3;AN=3;AF=0.75;RO=2;AO=166;PRO=39.0;PAO=42.5;QR=78;QA=5735;PQR=1418.0;PQA=1549.5;SRF=0;SRR=2;SAF=26;SAR=140;SRP=7.35324;SAP=173.013;AB=0.794702;ABP=116.919;RUN=1;RPP=8.24276;RPPR=3.0103;RPL=93.0;RPR=73.0;EPP=8.24276;EPPR=3.0103;DPRA=0.0;ODDS=7.20129;GTI=0;TYPE=ins;CIGAR=1M4I22M;NUMALT=2;MEANALT=5.5;LEN=4;MQM=59.8795;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.366;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=60.25;MQRankSum=-1.124;QD=30.715;RPA=9;RU=AG;ReadPosRankSum=0.347;SOR=1.4285;STR;ClippingRankSum=-1.266	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:65.1406:52:0:0:46:1631:-153.919,-13.0061,0.0:49:96:51:1,52:2286,118,0:1:.:1:.:.:.:-0.000113809	./1:65.19335:200:2:78:120:4104:-411.98,-38.6951,-9.52618:124:85:146:2,129:8540,724,426:.:1:1:.:.:.:-0.0139302
chr1	159003218	.	T	C	9052.015	REJECT	NS=2;DP=238;DPB=267.0;AC=4;AN=4;AF=1.0;RO=0;AO=267;PRO=0.0;PAO=0.0;QR=0;QA=10318;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=161;SAR=106;SRP=0.0;SAP=27.6122;AB=0.0;ABP=0.0;RUN=1;RPP=155.656;RPPR=0.0;RPL=65.0;RPR=202.0;EPP=8.93915;EPPR=0.0;DPRA=0.0;ODDS=40.5371;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9635;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.635;SOR=1.1785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.7315:57:0:0:58:2228:-200.703,-15.73,0.0:57:100:57:0,57:2406,171,0:1:.:1:.:.:.:-0.000113809	1/1:123.1245:209:0:0:209:8090:-727.769,-56.6215,0.0:209:100:209:0,209:9077,626,0:.:1:1:.:.:.:-0.0139302
chr1	162740327	.	T	C	14515.45	REJECT	NS=2;DP=385;DPB=443.0;AC=4;AN=4;AF=1.0;RO=1;AO=442;PRO=0.0;PAO=0.0;QR=39;QA=16903;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=189;SAR=253;SRP=5.18177;SAP=23.1333;AB=0.0;ABP=0.0;RUN=1;RPP=5.38811;RPPR=5.18177;RPL=232.0;RPR=210.0;EPP=4.97543;EPPR=5.18177;DPRA=0.0;ODDS=75.1232;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986425;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.461;Dels=0.0;FS=1.766;HaplotypeScore=4.9461;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.747;QD=28.11;ReadPosRankSum=0.355;SOR=0.932	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:112:0:0:115:4325:-388.843,-30.7505,0.0:112:100:112:0,109:4595,328,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:327:1:39:327:12578:-1127.78,-85.3035,0.0:326:100:327:1,326:13951,925,0:.:1:1:.:.:.:-0.0139302
chr1	162743418	.	G	T	8024.18	REJECT	NS=2;DP=214;DPB=248.0;AC=4;AN=4;AF=1.0;RO=0;AO=248;PRO=0.0;PAO=0.0;QR=0;QA=9582;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=83;SAR=165;SRP=0.0;SAP=61.8852;AB=0.0;ABP=0.0;RUN=1;RPP=216.095;RPPR=0.0;RPL=202.0;RPR=46.0;EPP=10.8906;EPPR=0.0;DPRA=0.0;ODDS=46.7542;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.899;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.165;SOR=1.91	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.9285:68:0:0:68:2631:-236.92,-18.43,0.0:68:100:68:0,68:2887,204,0:1:.:1:.:.:.:-0.000113809	1/1:121.9285:180:0:0:180:6951:-625.378,-48.7755,0.0:180:100:180:0,180:7789,539,0:.:1:1:.:.:.:-0.0139302
chr1	167906239	.	A	C	12899.5	REJECT	NS=2;DP=340;DPB=383.0;AC=4;AN=4;AF=1.0;RO=0;AO=383;PRO=0.0;PAO=0.0;QR=0;QA=14681;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=161;SAR=222;SRP=0.0;SAP=24.107;AB=0.0;ABP=0.0;RUN=1;RPP=70.3713;RPPR=0.0;RPL=246.0;RPR=137.0;EPP=70.3713;EPPR=0.0;DPRA=0.0;ODDS=57.3748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0261;MQMR=0.0;PAIRED=0.994778;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7839;MLEAC=2;MLEAF=1.0;MQ=60.02;QD=31.555;SOR=1.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:84:0:0:85:3260:-293.497,-23.0425,0.0:84:100:84:0,83:3417,249,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:298:0:0:298:11421:-1027.23,-80.6683,0.0:298:100:298:0,298:12819,885,0:.:1:1:.:.:.:-0.0139302
chr1	179087934	.	T	C	8065.56	REJECT	NS=2;DP=218;DPB=244.0;AC=4;AN=4;AF=1.0;RO=0;AO=244;PRO=0.0;PAO=0.0;QR=0;QA=9287;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=97;SAR=147;SRP=0.0;SAP=25.259;AB=0.0;ABP=0.0;RUN=1;RPP=214.07;RPPR=0.0;RPL=199.0;RPR=45.0;EPP=6.57009;EPPR=0.0;DPRA=0.0;ODDS=36.1281;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.32;SOR=1.1825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.958:50:0:0:51:1933:-174.152,-13.8152,0.0:50:100:50:0,50:2057,149,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:193:0:0:193:7354:-661.552,-52.2389,0.0:193:100:193:0,193:8129,560,0:.:1:1:.:.:.:-0.0139302
chr1	189045393	.	G	A	7087.18	REJECT	NS=2;DP=278;DPB=315.0;AC=2;AN=4;AF=0.5;RO=76;AO=237;PRO=0.0;PAO=0.0;QR=2850;QA=9064;PQR=0.0;PQA=0.0;SRF=62;SRR=14;SAF=173;SAR=64;SRP=68.8402;SAP=111.868;AB=0.752381;ABP=177.286;RUN=1;RPP=44.14;RPPR=3.46745;RPL=85.0;RPR=152.0;EPP=7.05089;EPPR=3.0103;DPRA=0.0;ODDS=133.577;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1688;MQMR=60.0;PAIRED=0.991561;PAIREDR=0.973684;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6355;Dels=0.0;FS=5.196;HaplotypeScore=7.7654;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-1.811;QD=24.265;ReadPosRankSum=-0.7445;SOR=0.3475;ClippingRankSum=-0.668	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:70:39:1426:33:1260:-93.9522,0.0,-108.903:32:46:70:37,32:1133,0,1317:1:.:1:.:.:.:-0.000113809	0/1:129.501:242:37:1424:204:7804:-636.734,0.0,-62.8491:203:85:240:37,203:7954,0,890:.:1:1:.:.:.:-0.0139302
chr1	189045458	.	A	ATAGTT	8046.21	REJECT	NS=2;DP=352;DPB=886.0;AC=2;AN=4;AF=0.5;RO=115;AO=278;PRO=4.0;PAO=17.0;QR=4369;QA=9831;PQR=97.0;PQA=534.0;SRF=57;SRR=58;SAF=156;SAR=122;SRP=3.02918;SAP=12.0399;AB=0.703797;ABP=145.508;RUN=1;RPP=4.54127;RPPR=16.7755;RPL=132.0;RPR=146.0;EPP=22.5379;EPPR=44.7215;DPRA=0.0;ODDS=227.951;GTI=0;TYPE=ins;CIGAR=1M5I2M;NUMALT=1;MEANALT=2.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=0.985612;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;END=189045458;HOMLEN=2;HOMSEQ=TA;SVLEN=5;SVTYPE=INS;BaseQRankSum=0.359;FS=4.5125;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.46;QD=24.305;ReadPosRankSum=-0.657;SOR=0.826;ClippingRankSum=-0.344	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:52:2005:39:1325:-100.126,0.0,-155.339:43:47:91:31,50:1697,0,2283:1:.:1:1:.:.:-0.000113809	0/1:129.501:306:63:2364:239:8506:-713.769,0.0,-128.028:268:88:305:27,277:20334,0,1935:.:1:1:1:.:.:-0.0139302
chr1	193111228	.	TGA	T	203.722	REJECT	NS=2;DP=141;DPB=168.381;AC=2;AN=4;AF=0.5;RO=112;AO=22;PRO=38.5;PAO=33.5;QR=4141;QA=761;PQR=1354.0;PQA=1172.0;SRF=23;SRR=89;SAF=11;SAR=11;SRP=87.4651;SAP=3.0103;AB=0.156028;ABP=147.914;RUN=1;RPP=50.7827;RPPR=114.996;RPL=22.0;RPR=0.0;EPP=3.0103;EPPR=31.0068;DPRA=0.0;ODDS=23.6341;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=1;MEANALT=4.0;LEN=2;MQM=60.9091;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991071;technology.ILLUMINA=1.0;BaseQRankSum=0.085;FS=16.955;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.964;QD=2.51;ReadPosRankSum=-2.756;SOR=0.018;ClippingRankSum=0.896	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:112.162:40:31:1148:9:300:-15.9102,0.0,-95.6645:8:21:40:32,8:178,0,1030:1:.:1:.:.:.:-0.000113809	0/1:102.639:100:81:2993:13:461:-14.9341,0.0,-255.884:13:14:94:.:.:.:.:1:.:.:.:-0.0139302
chr1	193502759	.	G	A	1623.585	REJECT	NS=2;DP=329;DPB=374.0;AC=2;AN=4;AF=0.5;RO=292;AO=82;PRO=0.0;PAO=0.0;QR=11204;QA=3096;PQR=0.0;PQA=0.0;SRF=122;SRR=170;SAF=30;SAR=52;SRP=20.1441;SAP=15.8273;AB=0.219251;ABP=259.058;RUN=1;RPP=4.70511;RPPR=9.70319;RPL=45.0;RPR=37.0;EPP=4.70511;EPPR=16.1284;DPRA=0.0;ODDS=93.9564;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982877;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0565;Dels=0.0;FS=2.2735;HaplotypeScore=9.8646;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5575;QD=10.295;ReadPosRankSum=-0.17;SOR=0.844;ClippingRankSum=-0.562	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.294:84:38:1463:47:1768:-136.134,0.0,-108.683:46:55:84:38,46:1573,0,1383:1:.:1:.:.:.:-0.000113809	0/1:117.294:286:254:9741:35:1328:-41.193,0.0,-797.897:35:12:286:249,35:652,0,9825:.:1:1:.:.:.:-0.0139302
chr1	201981218	.	C	G	5983.765	REJECT	NS=2;DP=361;DPB=411.0;AC=2;AN=4;AF=0.5;RO=201;AO=210;PRO=0.0;PAO=0.0;QR=7635;QA=8012;PQR=0.0;PQA=0.0;SRF=94;SRR=107;SAF=102;SAR=108;SRP=4.83607;SAP=3.38255;AB=0.510949;ABP=3.43825;RUN=1;RPP=3.67208;RPPR=3.53966;RPL=109.0;RPR=101.0;EPP=7.14644;EPPR=9.76239;DPRA=0.0;ODDS=315.996;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995238;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.505;Dels=0.0;FS=2.862;HaplotypeScore=8.8561;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3715;QD=17.96;ReadPosRankSum=0.3755;SOR=0.8615;ClippingRankSum=0.313	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:51:1924:48:1830:-137.902,0.0,-146.362:47:48:98:51,47:1677,0,1770:1:.:1:.:.:.:-0.000113809	0/1:129.501:311:150:5711:162:6182:-471.569,0.0,-429.197:161:52:311:150,161:5967,0,5445:.:1:1:.:.:.:-0.0139302
chr1	201981862	.	T	C	1316.61	REJECT	NS=1;DP=101;DPB=101.0;AC=1;AN=4;AF=0.5;RO=52;AO=49;PRO=0.0;PAO=0.0;QR=1909;QA=1827;PQR=0.0;PQA=0.0;SRF=27;SRR=25;SAF=23;SAR=26;SRP=3.17734;SAP=3.40914;AB=0.485149;ABP=3.2038;RUN=1;RPP=10.4997;RPPR=3.0103;RPL=18.0;RPR=31.0;EPP=5.18177;EPPR=3.17734;DPRA=0.0;ODDS=303.16;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.959184;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.59;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.06;QD=14.98;ReadPosRankSum=0.964;SOR=0.619;ClippingRankSum=0.774	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:52:1909:49:1827:-137.492,0.0,-144.492:47:48:98:50,46:1496,0,1718:1:.:1:.:.:.:-0.000113809	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	204386265	.	A	G	1297.99	REJECT	NS=1;DP=91;DPB=91.0;AC=1;AN=4;AF=0.5;RO=42;AO=49;PRO=0.0;PAO=0.0;QR=1604;QA=1845;PQR=0.0;PQA=0.0;SRF=35;SRR=7;SAF=41;SAR=8;SRP=43.5445;SAP=51.2702;AB=0.538462;ABP=4.17955;RUN=1;RPP=19.0083;RPPR=6.31921;RPL=15.0;RPR=34.0;EPP=3.40914;EPPR=4.87156;DPRA=0.0;ODDS=253.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.959184;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.394;FS=1.169;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.615;QD=14.09;ReadPosRankSum=0.801;SOR=1.064;ClippingRankSum=0.948	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:42:1604:49:1845:-141.433,0.0,-119.739:47:53:88:40,46:1282,0,1344:1:.:1:.:.:.:-0.000113809	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	204386685	.	T	G	3071.8	PASS	SOMATIC;NS=2;DP=441;DPB=441.0;AC=1;AN=3;AF=0.25;RO=324;AO=117;PRO=0.0;PAO=0.0;QR=12492;QA=4463;PQR=0.0;PQA=0.0;SRF=154;SRR=170;SAF=51;SAR=66;SRP=4.72603;SAP=7.18621;AB=0.363354;ABP=55.2335;RUN=1;RPP=9.71031;RPPR=3.11753;RPL=68.0;RPR=49.0;EPP=9.71031;EPPR=18.4519;DPRA=2.70588;ODDS=75.2661;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.072;Dels=0.0;FS=6.181;HaplotypeScore=1.999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.957;QD=12.45;ReadPosRankSum=-0.666;SOR=0.929	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:116:119:4612:0:0:0.0,-32.2617,-415.072:0:0:116:113,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:129.501:320:205:7880:117:4463:-314.204,0.0,-621.576:117:36:320:196,111:38.0:0.356:2:4012,0,7787:.:1:1:.:.:1:-0.0139302
chr1	204388877	.	G	GT	277.858	REJECT	NS=2;DP=123;DPB=243.31;AC=2;AN=2;AF=0.0;RO=53;AO=13;PRO=82.0833;PAO=63.0833;QR=1875;QA=266;PQR=2838.67;PQA=2149.67;SRF=5;SRR=48;SAF=4;SAR=9;SRP=78.766;SAP=7.18621;AB=0.105691;ABP=169.119;RUN=1;RPP=11.1951;RPPR=3.05127;RPL=10.0;RPR=3.0;EPP=3.17734;EPPR=5.01789;DPRA=0.0;ODDS=16.8127;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=55.0769;MQMR=59.8302;PAIRED=1.0;PAIREDR=0.981132;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:145.744:32:7:240:2:54:-24.1872,-18.0012,-56.1435:2:8:25:.:.:1:.:.:.:-0.000113809	./1:72.2353:91:46:1635:11:212:-9.4455,-6.27768,-183.869:11:15:74:.:.:1:.:.:.:-0.0139302
chr1	204388877	.	GT	G	277.858	REJECT	NS=2;DP=123;DPB=243.31;AC=2;AN=4;AF=0.5;RO=53;AO=20;PRO=82.0833;PAO=59.5833;QR=1875;QA=496;PQR=2838.67;PQA=1976.67;SRF=5;SRR=48;SAF=5;SAR=15;SRP=78.766;SAP=13.8677;AB=0.162602;ABP=124.63;RUN=1;RPP=4.74748;RPPR=3.05127;RPL=12.0;RPR=8.0;EPP=3.44459;EPPR=5.01789;DPRA=0.0;ODDS=16.8127;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=59.7;MQMR=59.8302;PAIRED=1.0;PAIREDR=0.981132;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.449;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=59.53;MQRankSum=-0.906;QD=2.05;ReadPosRankSum=0.091;SOR=0.293;ClippingRankSum=-0.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.372:32:7:240:11:277:-24.1872,0.0,-77.5118:14:48:28:15,17:193,0,161:1:.:1:.:.:.:-0.000113809	0/1:72.2353:91:46:1635:9:219:-9.4455,0.0,-259.865:9:12:74:.:.:.:.:1:.:.:.:-0.0139302
chr1	204388877	.	GTT	G	277.858	REJECT	NS=2;DP=123;DPB=243.31;AC=2;AN=2;AF=0.0;RO=53;AO=13;PRO=82.0833;PAO=46.25;QR=1875;QA=294;PQR=2838.67;PQA=1536.0;SRF=5;SRR=48;SAF=4;SAR=9;SRP=78.766;SAP=7.18621;AB=0.105691;ABP=169.119;RUN=1;RPP=11.1951;RPPR=3.05127;RPL=10.0;RPR=3.0;EPP=3.17734;EPPR=5.01789;DPRA=0.0;ODDS=16.8127;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=3;MEANALT=11.5;LEN=2;MQM=59.1538;MQMR=59.8302;PAIRED=1.0;PAIREDR=0.981132;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:145.744:32:7:240:5:121:-24.1872,-28.7416,-183.466:5:20:25:.:.:1:.:.:.:-0.000113809	./1:72.2353:91:46:1635:8:173:-9.4455,-20.09,-354.743:8:11:74:.:.:1:.:.:.:-0.0139302
chr1	204501383	.	C	T	8139.52	REJECT	NS=2;DP=306;DPB=346.0;AC=2;AN=4;AF=0.5;RO=78;AO=268;PRO=0.0;PAO=0.0;QR=3044;QA=10226;PQR=0.0;PQA=0.0;SRF=32;SRR=46;SAF=100;SAR=168;SRP=8.46682;SAP=40.4763;AB=0.774566;ABP=229.571;RUN=1;RPP=8.4876;RPPR=4.79202;RPL=147.0;RPR=121.0;EPP=20.1552;EPPR=3.45573;DPRA=0.0;ODDS=142.31;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992537;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.028;Dels=0.0;FS=6.4415;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.585;QD=24.96;ReadPosRankSum=-1.2645;SOR=0.8895;ClippingRankSum=0.178	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:40:1554:38:1468:-111.026,0.0,-118.768:37:48:77:40,37:1296,0,1513:1:.:1:.:.:.:-0.000113809	0/1:129.501:267:38:1490:230:8758:-715.202,0.0,-61.4564:229:86:267:38,228:8928,0,883:.:1:1:.:.:.:-0.0139302
chr1	204505976	.	GA	G	1060.57	REJECT	NS=2;DP=246;DPB=295.81;AC=2;AN=4;AF=0.5;RO=190;AO=52;PRO=57.0;PAO=49.0;QR=7279;QA=1984;PQR=1983.5;PQA=1676.5;SRF=133;SRR=57;SAF=35;SAR=17;SRP=69.0231;SAP=16.5402;AB=0.211382;ABP=181.0;RUN=1;RPP=7.18621;RPPR=31.5823;RPL=21.0;RPR=31.0;EPP=3.67845;EPPR=11.9705;DPRA=0.0;ODDS=79.9169;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.678;FS=1.137;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.758;QD=11.64;ReadPosRankSum=0.844;SOR=0.506;ClippingRankSum=-0.024	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7035:56:27:1046:27:1022:-77.1167,0.0,-82.6116:27:49:55:29,28:701,0,730:1:.:1:.:.:.:-0.000113809	0/1:136.407:191:163:6233:25:962:-35.9471,0.0,-534.435:25:13:188:.:.:.:.:1:.:.:.:-0.0139302
chr1	204506107	.	C	T	8910.3	REJECT	NS=2;DP=233;DPB=264.0;AC=4;AN=4;AF=1.0;RO=0;AO=264;PRO=0.0;PAO=0.0;QR=0;QA=10243;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=80;SAR=184;SRP=0.0;SAP=91.9749;AB=0.0;ABP=0.0;RUN=1;RPP=48.0519;RPPR=0.0;RPL=169.0;RPR=95.0;EPP=38.8396;EPPR=0.0;DPRA=0.0;ODDS=42.431;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1136;MQMR=0.0;PAIRED=0.996212;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.08;QD=29.69;SOR=1.7795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:61:0:0:61:2358:-212.409,-16.5525,0.0:61:100:61:0,61:2581,184,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:202:0:0:203:7885:-709.362,-55.0055,0.0:202:100:202:0,202:8843,608,0:.:1:1:.:.:.:-0.0139302
chr1	204516025	.	A	G	8293.915	REJECT	NS=2;DP=224;DPB=268.0;AC=4;AN=4;AF=1.0;RO=0;AO=267;PRO=0.0;PAO=0.0;QR=0;QA=10165;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=76;SAR=191;SRP=0.0;SAP=110.567;AB=0.0;ABP=0.0;RUN=1;RPP=64.5679;RPPR=0.0;RPL=177.0;RPR=90.0;EPP=16.6816;EPPR=0.0;DPRA=0.0;ODDS=58.5575;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996255;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.25;SOR=2.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.121:86:0:0:87:3287:-295.897,-23.5561,0.0:86:100:86:0,86:3461,257,0:1:.:1:.:.:.:-0.000113809	1/1:122.121:181:0:0:180:6878:-618.828,-48.7646,0.0:180:100:180:0,180:7695,536,0:.:1:1:.:.:.:-0.0139302
chr1	204624998	.	C	T	1217.73	REJECT	NS=2;DP=298;DPB=340.0;AC=2;AN=4;AF=0.5;RO=274;AO=66;PRO=0.0;PAO=0.0;QR=10309;QA=2489;PQR=0.0;PQA=0.0;SRF=70;SRR=204;SAF=20;SAR=46;SRP=145.313;SAP=25.2514;AB=0.194118;ABP=279.324;RUN=1;RPP=28.8048;RPPR=37.532;RPL=47.0;RPR=19.0;EPP=3.0103;EPPR=3.042;DPRA=0.0;ODDS=47.9098;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.969697;PAIREDR=0.981752;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.156;Dels=0.0;FS=1.394;HaplotypeScore=41.696;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.186;QD=9.24;ReadPosRankSum=0.3475;SOR=0.6305;ClippingRankSum=1.013	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.603:81:44:1635:38:1452:-108.525,0.0,-124.991:37:46:81:43,37:1400,0,3255:1:.:1:.:.:.:-0.000113809	0/1:117.603:257:230:8674:28:1037:-23.4469,0.0,-710.401:28:11:257:229,28:423,0,8869:.:1:1:.:.:.:-0.0139302
chr1	204625007	.	T	C	3930.51	REJECT	NS=2;DP=264;DPB=303.0;AC=2;AN=4;AF=0.5;RO=156;AO=147;PRO=0.0;PAO=0.0;QR=5936;QA=5620;PQR=0.0;PQA=0.0;SRF=41;SRR=115;SAF=35;SAR=112;SRP=79.2345;SAP=90.593;AB=0.485149;ABP=3.59079;RUN=1;RPP=125.337;RPPR=126.005;RPL=119.0;RPR=28.0;EPP=27.8419;EPPR=21.0502;DPRA=0.0;ODDS=214.779;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979592;PAIREDR=0.974359;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.136;Dels=0.0;FS=0.296;HaplotypeScore=35.6671;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.164;QD=17.685;ReadPosRankSum=-0.2795;SOR=0.7805;ClippingRankSum=-0.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.124:75:41:1566:35:1325:-98.7106,0.0,-120.404:35:46:75:40,35:1335,0,3188:1:.:1:.:.:.:-0.000113809	0/1:118.124:226:115:4370:112:4295:-324.89,0.0,-331.636:112:49:226:114,112:4137,0,4161:.:1:1:.:.:.:-0.0139302
chr1	204625455	.	A	G	1898.39	REJECT	NS=2;DP=378;DPB=434.0;AC=2;AN=4;AF=0.5;RO=337;AO=97;PRO=0.0;PAO=0.0;QR=13089;QA=3713;PQR=0.0;PQA=0.0;SRF=176;SRR=161;SAF=51;SAR=46;SRP=4.4601;SAP=3.56996;AB=0.223502;ABP=291.206;RUN=1;RPP=3.21178;RPPR=3.06829;RPL=47.0;RPR=50.0;EPP=3.56996;EPPR=13.8419;DPRA=0.0;ODDS=146.194;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988131;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4705;Dels=0.0;FS=1.009;HaplotypeScore=3.9978;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.239;QD=9.195;ReadPosRankSum=-0.0305;SOR=0.722;ClippingRankSum=-0.558	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:57:2193:53:2027:-152.632,0.0,-167.565:53:49:108:54,53:1717,0,1810:1:.:1:.:.:.:-0.000113809	0/1:129.501:323:280:10896:44:1686:-63.8779,0.0,-892.245:44:14:323:278,44:915,0,11144:.:1:1:.:.:.:-0.0139302
chr1	204626549	.	C	T	1144.405	REJECT	NS=2;DP=381;DPB=432.0;AC=2;AN=4;AF=0.5;RO=354;AO=77;PRO=0.0;PAO=0.0;QR=13186;QA=2823;PQR=0.0;PQA=0.0;SRF=207;SRR=147;SAF=45;SAR=32;SRP=25.0931;SAP=7.77626;AB=0.178241;ABP=391.483;RUN=1;RPP=11.1604;RPPR=18.3456;RPL=30.0;RPR=47.0;EPP=6.42261;EPPR=7.81944;DPRA=0.0;ODDS=126.254;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9915;PAIRED=0.987013;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0755;Dels=0.0;FS=5.551;HaplotypeScore=8.6902;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.367;QD=6.3;ReadPosRankSum=1.003;SOR=0.9155;ClippingRankSum=-1.145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:64:2375:34:1200:-81.4849,0.0,-187.271:33:35:96:62,33:1014,0,2241:1:.:1:.:.:.:-0.000113809	0/1:129.501:332:290:10811:43:1623:-55.8696,0.0,-882.254:42:13:331:288,42:801,0,10992:.:1:1:.:.:.:-0.0139302
chr1	204627052	.	C	T	5717.865	REJECT	NS=2;DP=369;DPB=440.0;AC=2;AN=4;AF=0.5;RO=225;AO=215;PRO=0.0;PAO=0.0;QR=8445;QA=7986;PQR=0.0;PQA=0.0;SRF=99;SRR=126;SAF=90;SAR=125;SRP=10.0459;SAP=15.3826;AB=0.488636;ABP=3.50382;RUN=1;RPP=59.8221;RPPR=19.2336;RPL=145.0;RPR=70.0;EPP=21.685;EPPR=41.3151;DPRA=0.0;ODDS=297.682;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.930233;PAIREDR=0.92;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1475;Dels=0.0;FS=4.486;HaplotypeScore=33.7567;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.734;QD=15.32;ReadPosRankSum=0.3335;SOR=0.9545;ClippingRankSum=-0.887	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:68:2525:50:1814:-131.297,0.0,-195.329:47:42:111:61,44:1377,0,2182:1:.:1:.:.:.:-0.000113809	0/1:129.501:310:157:5920:165:6172:-467.977,0.0,-445.348:160:51:310:144,155:5621,0,5093:.:1:1:.:.:.:-0.0139302
chr1	206647742	.	A	G	13659.099999999999	REJECT	NS=2;DP=360;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=409;PRO=0.0;PAO=0.0;QR=0;QA=15655;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=229;SAR=180;SRP=0.0;SAP=15.7577;AB=0.0;ABP=0.0;RUN=1;RPP=21.4917;RPPR=0.0;RPL=175.0;RPR=234.0;EPP=5.35167;EPPR=0.0;DPRA=0.0;ODDS=66.0601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997555;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7896;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.205;SOR=1.2665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.5595:98:0:0:99:3719:-334.762,-26.8145,0.0:98:100:98:0,97:3961,291,0:1:.:1:.:.:.:-0.000113809	1/1:123.5595:310:0:0:310:11936:-1073.55,-83.9399,0.0:310:100:310:0,310:13339,918,0:.:1:1:.:.:.:-0.0139302
chr1	206647787	.	T	C	14351.65	REJECT	NS=2;DP=380;DPB=435.0;AC=4;AN=4;AF=1.0;RO=0;AO=435;PRO=0.0;PAO=0.0;QR=0;QA=16616;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=191;SAR=244;SRP=0.0;SAP=17.0325;AB=0.0;ABP=0.0;RUN=1;RPP=6.13023;RPPR=0.0;RPL=230.0;RPR=205.0;EPP=42.5511;EPPR=0.0;DPRA=0.0;ODDS=72.9043;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.395;SOR=0.9285	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:110:4150:-373.514,-29.7869,0.0:109:100:109:0,108:4443,324,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:325:0:0:325:12466:-1121.18,-87.9813,0.0:325:100:325:0,325:13884,957,0:.:1:1:.:.:.:-0.0139302
chr1	206650065	.	A	G	6064.165000000001	REJECT	NS=2;DP=393;DPB=452.0;AC=2;AN=4;AF=0.5;RO=232;AO=220;PRO=0.0;PAO=0.0;QR=8982;QA=8433;PQR=0.0;PQA=0.0;SRF=113;SRR=119;SAF=117;SAR=103;SRP=3.34725;SAP=4.94488;AB=0.486726;ABP=3.7021;RUN=1;RPP=3.642;RPPR=6.75422;RPL=106.0;RPR=114.0;EPP=6.20829;EPPR=4.84482;DPRA=0.0;ODDS=392.553;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995455;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.65;Dels=0.0;FS=3.45;HaplotypeScore=3.8601;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.94;QD=17.1;ReadPosRankSum=0.0925;SOR=0.8405;ClippingRankSum=1.148	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:58:2254:60:2280:-173.205,0.0,-170.885:59:51:116:56,58:1935,0,1883:1:.:1:.:.:.:-0.000113809	0/1:129.501:334:174:6728:160:6153:-462.936,0.0,-514.681:160:48:334:174,160:5862,0,6544:.:1:1:.:.:.:-0.0139302
chr1	206651107	.	G	A	1342.55	REJECT	NS=1;DP=95;DPB=95.0;AC=1;AN=4;AF=0.5;RO=46;AO=49;PRO=0.0;PAO=0.0;QR=1783;QA=1854;PQR=0.0;PQA=0.0;SRF=29;SRR=17;SAF=30;SAR=19;SRP=9.80795;SAP=8.37251;AB=0.515789;ABP=3.21602;RUN=1;RPP=12.9813;RPPR=3.19912;RPL=17.0;RPR=32.0;EPP=8.37251;EPPR=9.80795;DPRA=0.0;ODDS=296.987;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.418;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.254;QD=18.76;ReadPosRankSum=-0.926;SOR=0.742;ClippingRankSum=-0.012	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:46:1783:49:1854:-141.143,0.0,-135.139:48:52:93:44,48:1754,0,1631:1:.:1:.:.:.:-0.000113809	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0139302
chr1	206665896	.	C	G	16090.6	REJECT	NS=2;DP=427;DPB=486.0;AC=4;AN=4;AF=1.0;RO=0;AO=485;PRO=0.0;PAO=0.0;QR=0;QA=18556;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=284;SRP=0.0;SAP=33.8542;AB=0.0;ABP=0.0;RUN=1;RPP=4.30423;RPPR=0.0;RPL=234.0;RPR=251.0;EPP=33.8542;EPPR=0.0;DPRA=0.0;ODDS=76.7351;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995876;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7458;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.355;SOR=1.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:116:4497:-404.741,-31.4506,0.0:116:100:116:0,116:4774,349,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:369:0:0:369:14059:-1264.44,-99.886,0.0:368:100:368:0,368:15624,1084,0:.:1:1:.:.:.:-0.0139302
chr1	207014776	.	C	T	13723.5	REJECT	NS=2;DP=366;DPB=417.0;AC=4;AN=4;AF=1.0;RO=0;AO=417;PRO=0.0;PAO=0.0;QR=0;QA=15814;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=182;SAR=235;SRP=0.0;SAP=17.6378;AB=0.0;ABP=0.0;RUN=1;RPP=18.7626;RPPR=0.0;RPL=236.0;RPR=181.0;EPP=5.30675;EPPR=0.0;DPRA=0.0;ODDS=67.2749;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992806;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.957;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.685;SOR=0.9315	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:101:3817:-343.545,-27.3421,0.0:99:100:99:0,98:4037,294,0:1:.:1:.:.:.:-0.000113809	1/1:129.501:316:0:0:316:11997:-1078.97,-85.495,0.0:316:100:316:0,316:13325,921,0:.:1:1:.:.:.:-0.0139302
chr1	210001048	.	A	C	2868.7	PASS	SOMATIC;NS=2;DP=414;DPB=414.0;AC=1;AN=3;AF=0.25;RO=304;AO=110;PRO=0.0;PAO=0.0;QR=11735;QA=4169;PQR=0.0;PQA=0.0;SRF=172;SRR=132;SAF=62;SAR=48;SRP=14.4391;SAP=6.87947;AB=0.361842;ABP=53.4113;RUN=1;RPP=3.72096;RPPR=3.7246;RPL=52.0;RPR=58.0;EPP=3.72096;EPPR=3.03887;DPRA=2.76364;ODDS=69.587;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0909;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996711;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.06;Dels=0.0;FS=1.441;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.24;QD=12.06;ReadPosRankSum=1.19;SOR=0.599	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:150.943:108:110:4194:0:0:0.0,-29.7953,-377.462:0:0:108:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:124.9715:304:194:7541:110:4169:-292.629,0.0,-595.96:110:36:304:187,104:37.0:0.355:2:3708,0,7563:.:1:1:.:.:1:-0.0139302
chr1	210001125	.	GC	G	1950.68	PASS	SOMATIC;NS=2;DP=279;DPB=284.0;AC=1;AN=4;AF=0.25;RO=198;AO=78;PRO=17.5;PAO=9.5;QR=7504;QA=2883;PQR=617.0;PQA=334.0;SRF=68;SRR=130;SAF=29;SAR=49;SRP=45.1676;SAP=14.1461;AB=0.371429;ABP=33.1627;RUN=1;RPP=16.4846;RPPR=12.8806;RPL=50.0;RPR=28.0;EPP=31.5178;EPPR=30.4279;DPRA=3.04348;ODDS=47.1865;GTI=0;TYPE=del;CIGAR=1M1D6M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987179;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.535;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.429;QD=10.75;RPA=5,4;RU=C;ReadPosRankSum=0.169;SOR=0.638;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:144.546:75:69:2573:0:0:0.0,-20.0669,-247.205:0:0:75:81,0:0.209877,0.0:60.0,0.0:37.1515,0.0:0.00252525,0.0:0,0:0,0:26,55,0,0:.:.:.:0:.:0:.:-0.000113809	0/1:121.773:225:129:4931:78:2883:-205.436,0.0,-399.761:81:38:215:139,81:0.111111,0.382716:60.0,60.1235:38.7099,38.2062:0.00141143,0.00123457:41,19:56,20:53,91,30,51:2466,0,4368:.:1:1:.:1:.:-0.0139302
chr1	211520433	.	G	GT	233.672	REJECT	NS=2;DP=198;DPB=240.312;AC=2;AN=4;AF=0.5;RO=162;AO=23;PRO=48.0;PAO=26.0;QR=6048;QA=797;PQR=1732.5;PQA=942.5;SRF=46;SRR=116;SAF=5;SAR=18;SRP=68.6906;SAP=18.9659;AB=0.116162;ABP=256.393;RUN=1;RPP=5.3706;RPPR=31.3735;RPL=9.0;RPR=14.0;EPP=7.63648;EPPR=15.074;DPRA=0.0;ODDS=21.4271;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:93.0565:43:36:1345:5:176:-10.1404,0.0,-121.327:5:12:41:.:.:1:.:.:.:-0.000113809	0/1:138.365:155:126:4703:18:621:-20.1692,0.0,-452.739:18:13:144:.:.:1:.:.:.:-0.0139302
chr1	214503489	.	T	G	6263.3150000000005	REJECT	NS=2;DP=287;DPB=334.0;AC=3;AN=4;AF=0.75;RO=97;AO=237;PRO=0.0;PAO=0.0;QR=3708;QA=8937;PQR=0.0;PQA=0.0;SRF=52;SRR=45;SAF=137;SAR=100;SRP=4.10723;SAP=15.5535;AB=0.599174;ABP=23.6842;RUN=1;RPP=82.2553;RPPR=19.3299;RPL=72.0;RPR=165.0;EPP=3.23936;EPPR=11.0918;DPRA=0.0;ODDS=58.3368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995781;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.317;Dels=0.0;FS=1.467;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.821;QD=25.295;ReadPosRankSum=0.385;SOR=0.9365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:92:3457:-311.181,-24.9094,0.0:89:100:89:0,87:3542,261,0:1:.:1:.:.:.:-0.000113809	0/1:129.501:241:97:3708:145:5480:-427.42,0.0,-268.036:144:60:241:97,144:5320,0,3425:.:1:1:.:.:.:-0.0139302
chr1	225060249	.	A	C	2802.07	PASS	SOMATIC;NS=2;DP=392;DPB=392.0;AC=1;AN=3;AF=0.25;RO=286;AO=106;PRO=0.0;PAO=0.0;QR=10965;QA=4091;PQR=0.0;PQA=0.0;SRF=130;SRR=156;SAF=43;SAR=63;SRP=8.14287;SAP=11.2045;AB=0.358108;ABP=54.7735;RUN=1;RPP=14.81;RPPR=17.7095;RPL=65.0;RPR=41.0;EPP=7.02548;EPPR=8.96287;DPRA=3.08333;ODDS=60.8539;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=0.986014;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.56;Dels=0.0;FS=2.693;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.241;QD=12.39;ReadPosRankSum=1.222;SOR=0.901	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.701:93:96:3647:0:0:0.0,-26.0026,-328.274:0:0:93:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.000113809	0/1:119.3505:293:190:7318:106:4091:-287.812,0.0,-578.036:105:36:293:178,100:38.0:0.362:2:3659,0,7245:.:1:1:.:.:1:-0.0139302
chr1	238504498	.	G	A	1067.125	REJECT	NS=2;DP=264;DPB=302.0;AC=2;AN=4;AF=0.5;RO=241;AO=60;PRO=0.0;PAO=0.0;QR=9145;QA=2282;PQR=0.0;PQA=0.0;SRF=162;SRR=79;SAF=38;SAR=22;SRP=65.082;SAP=12.2752;AB=0.198675;ABP=241.182;RUN=1;RPP=17.4868;RPPR=62.1266;RPL=20.0;RPR=40.0;EPP=3.0103;EPPR=3.01931;DPRA=0.0;ODDS=78.3795;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987552;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.207;Dels=0.0;FS=0.862;HaplotypeScore=16.48;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4525;QD=7.835;ReadPosRankSum=-0.501;SOR=0.552;ClippingRankSum=-0.339	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:41:1579:32:1192:-87.5471,0.0,-122.405:32:44:73:41,32:1000,0,1484:1:.:1:.:.:.:-0.000113809	0/1:129.501:228:200:7566:28:1090:-36.3414,0.0,-618.852:28:12:227:198,28:564,0,7637:.:1:1:.:.:.:-0.0139302
chr1	238504548	.	T	C	8880.575	REJECT	NS=2;DP=386;DPB=438.0;AC=3;AN=4;AF=0.75;RO=116;AO=319;PRO=0.0;PAO=0.0;QR=4444;QA=11890;PQR=0.0;PQA=0.0;SRF=65;SRR=51;SAF=173;SAR=146;SRP=6.67934;SAP=7.97269;AB=0.645833;ABP=65.0782;RUN=1;RPP=6.61127;RPPR=6.67934;RPL=148.0;RPR=171.0;EPP=16.7947;EPPR=7.80251;DPRA=0.0;ODDS=64.5447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996865;PAIREDR=0.982759;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.042;Dels=0.0;FS=0.6935;HaplotypeScore=8.6703;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.503;QD=25.415;ReadPosRankSum=-1.354;SOR=0.7845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3751:-337.62,-27.6054,0.0:101:100:101:0,100:4029,300,0:1:.:1:.:.:.:-0.000113809	0/1:129.501:335:116:4444:217:8139:-641.878,0.0,-309.595:217:65:332:114,217:8076,0,3947:.:1:1:.:.:.:-0.0139302
chr1	241511550	.	A	G	2320.21	REJECT	NS=2;DP=202;DPB=236.0;AC=2;AN=4;AF=0.5;RO=141;AO=95;PRO=0.0;PAO=0.0;QR=5337;QA=3537;PQR=0.0;PQA=0.0;SRF=113;SRR=28;SAF=75;SAR=20;SRP=114.279;SAP=72.1546;AB=0.402542;ABP=22.4799;RUN=1;RPP=49.2969;RPPR=43.067;RPL=25.0;RPR=70.0;EPP=17.2963;EPPR=3.1489;DPRA=0.0;ODDS=152.126;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978947;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6035;Dels=0.0;FS=3.984;HaplotypeScore=2.9464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0015;QD=13.27;ReadPosRankSum=0.535;SOR=0.907;ClippingRankSum=1.265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.373:66:40:1511:27:993:-71.268,0.0,-117.93:27:40:66:39,27:887,0,1471:1:.:1:.:.:.:-0.000113809	0/1:119.373:169:101:3826:68:2544:-183.133,0.0,-298.473:68:40:169:101,68:2315,0,3755:.:1:1:.:.:.:-0.0139302
chr1	243558785	.	A	G	1605.025	REJECT	NS=2;DP=358;DPB=421.0;AC=2;AN=4;AF=0.5;RO=333;AO=88;PRO=0.0;PAO=0.0;QR=12624;QA=3209;PQR=0.0;PQA=0.0;SRF=178;SRR=155;SAF=44;SAR=44;SRP=6.45988;SAP=3.0103;AB=0.209026;ABP=312.613;RUN=1;RPP=3.40511;RPPR=13.972;RPL=46.0;RPR=42.0;EPP=6.56362;EPPR=13.972;DPRA=0.0;ODDS=74.1667;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996997;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.156;Dels=0.0;FS=1.07;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4495;QD=7.12;ReadPosRankSum=0.9795;SOR=0.564;ClippingRankSum=0.097	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:70:2690:54:1951:-141.981,0.0,-208.532:53:43:122:69,52:1550,0,2480:1:.:1:.:.:.:-0.000113809	0/1:129.501:296:263:9934:34:1258:-32.7545,0.0,-813.15:34:11:296:262,34:520,0,10176:.:1:1:.:.:.:-0.0139302
chr1	244500057	.	C	G	5224.545	REJECT	NS=2;DP=345;DPB=392.0;AC=2;AN=4;AF=0.5;RO=201;AO=191;PRO=0.0;PAO=0.0;QR=7635;QA=7322;PQR=0.0;PQA=0.0;SRF=109;SRR=92;SAF=104;SAR=87;SRP=6.13247;SAP=6.29593;AB=0.487245;ABP=3.56425;RUN=1;RPP=4.93166;RPPR=6.91031;RPL=89.0;RPR=102.0;EPP=4.93166;EPPR=3.0211;DPRA=0.0;ODDS=274.817;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6025;Dels=0.0;FS=1.2825;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.811;QD=18.38;ReadPosRankSum=0.079;SOR=0.79;ClippingRankSum=-0.445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5975:94:42:1617:52:2022:-156.541,0.0,-120.072:52:55:94:42,52:1909,0,1524:1:.:1:.:.:.:-0.000113809	0/1:118.5975:298:159:6018:139:5300:-396.019,0.0,-460.63:139:47:298:159,139:5019,0,5853:.:1:1:.:.:.:-0.0139302
chr1	249066372	.	T	C	1635.365	REJECT	NS=2;DP=293;DPB=339.0;AC=2;AN=4;AF=0.5;RO=256;AO=83;PRO=0.0;PAO=0.0;QR=9768;QA=3139;PQR=0.0;PQA=0.0;SRF=98;SRR=158;SAF=30;SAR=53;SRP=33.5466;SAP=16.8502;AB=0.244838;ABP=194.721;RUN=1;RPP=10.5712;RPPR=62.8615;RPL=50.0;RPR=33.0;EPP=12.4549;EPPR=29.6108;DPRA=0.0;ODDS=142.628;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996094;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.6075;Dels=0.0;FS=1.128;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.392;QD=9.86;ReadPosRankSum=0.104;SOR=0.6615;ClippingRankSum=0.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.2625:90:47:1807:44:1687:-127.201,0.0,-138.005:43:48:90:46,43:1478,0,1726:1:.:1:.:.:.:-0.000113809	0/1:126.2625:248:209:7961:39:1452:-63.4522,0.0,-648.97:39:16:248:209,39:880,0,8179:.:1:1:.:.:.:-0.0139302
chr2	3003010	.	G	A	2792.7	PASS	SOMATIC;NS=2;DP=449;DPB=449.0;AC=1;AN=3;AF=0.25;RO=336;AO=113;PRO=0.0;PAO=0.0;QR=12772;QA=4173;PQR=0.0;PQA=0.0;SRF=158;SRR=178;SAF=54;SAR=59;SRP=5.59539;SAP=3.49071;AB=0.338323;ABP=78.8428;RUN=1;RPP=3.02952;RPPR=3.94093;RPL=56.0;RPR=57.0;EPP=6.2579;EPPR=44.3717;DPRA=2.90435;ODDS=71.6891;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.991071;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-2.615;Dels=0.0;FS=0.419;HaplotypeScore=6.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.67;QD=10.68;ReadPosRankSum=-1.338;SOR=0.728	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:115:4244:0:0:0.0,-30.7082,-381.517:0:0:111:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:334:221:8528:113:4173:-284.894,0.0,-676.599:112:34:334:214,107:36.0:0.33:2:3594,0,8618:.:1:1:.:.:1:-0.0138116
chr2	3003071	.	G	A	2643.95	PASS	SOMATIC;NS=2;DP=350;DPB=350.0;AC=1;AN=3;AF=0.25;RO=251;AO=99;PRO=0.0;PAO=0.0;QR=9516;QA=3836;PQR=0.0;PQA=0.0;SRF=82;SRR=169;SAF=27;SAR=72;SRP=68.4919;SAP=47.4268;AB=0.380769;ABP=35.1147;RUN=1;RPP=5.66432;RPPR=29.1804;RPL=55.0;RPR=44.0;EPP=5.66432;EPPR=3.01895;DPRA=2.88889;ODDS=57.1035;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.575;Dels=0.0;FS=3.18;HaplotypeScore=1.997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.387;QD=13.32;ReadPosRankSum=1.111;SOR=0.992	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:90:3384:0:0:0.0,-24.3738,-304.626:0:0:88:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:259:161:6132:99:3836:-274.647,0.0,-481.167:98:38:259:156,95:38.0:0.38:2:3478,0,6055:.:1:1:.:.:1:-0.0138116
chr2	6004017	.	T	A	3038.33	PASS	SOMATIC;NS=2;DP=401;DPB=401.0;AC=1;AN=3;AF=0.25;RO=287;AO=114;PRO=0.0;PAO=0.0;QR=10880;QA=4375;PQR=0.0;PQA=0.0;SRF=125;SRR=162;SAF=44;SAR=70;SRP=13.3683;SAP=15.8868;AB=0.378738;ABP=41.4547;RUN=1;RPP=17.9439;RPPR=24.2635;RPL=71.0;RPR=43.0;EPP=4.22937;EPPR=3.62315;DPRA=3.01;ODDS=63.3268;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9338;PAIRED=0.982456;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.911;Dels=0.0;FS=3.296;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.234;QD=13.2;ReadPosRankSum=-0.297;SOR=0.927	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.727:96:100:3792:0:0:0.0,-27.0765,-341.214:0:0:96:93,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:118.8635:301:187:7088:114:4375:-311.994,0.0,-556.06:114:38:301:180,110:38.0:0.379:2:4001,0,7042:.:1:1:.:.:1:-0.0138116
chr2	8178735	.	A	G	2867.29	PASS	SOMATIC;NS=2;DP=417;DPB=417.0;AC=1;AN=3;AF=0.25;RO=306;AO=111;PRO=0.0;PAO=0.0;QR=11837;QA=4244;PQR=0.0;PQA=0.0;SRF=156;SRR=150;SAF=58;SAR=53;SRP=3.26577;SAP=3.49937;AB=0.341538;ABP=73.8938;RUN=1;RPP=7.41193;RPPR=11.2136;RPL=63.0;RPR=48.0;EPP=15.2371;EPPR=4.40118;DPRA=3.53261;ODDS=58.4033;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990991;PAIREDR=0.996732;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.86;Dels=0.0;FS=1.397;HaplotypeScore=5.899;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.198;QD=11.43;ReadPosRankSum=1.835;SOR=0.733	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:92:3503:0:0:0.0,-24.9382,-315.359:0:0:90:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:324:214:8334:111:4244:-293.678,0.0,-661.56:110:34:324:203,103:38.0:0.334:2:3732,0,8368:.:1:1:.:.:1:-0.0138116
chr2	8178798	.	C	T	2122.23	PASS	SOMATIC;NS=2;DP=303;DPB=303.0;AC=1;AN=3;AF=0.25;RO=220;AO=83;PRO=0.0;PAO=0.0;QR=8479;QA=3184;PQR=0.0;PQA=0.0;SRF=74;SRR=146;SAF=25;SAR=58;SRP=54.1781;SAP=31.5011;AB=0.344398;ABP=53.693;RUN=1;RPP=12.4549;RPPR=48.6507;RPL=51.0;RPR=32.0;EPP=3.24576;EPPR=10.7486;DPRA=3.8871;ODDS=39.6739;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.995455;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.107;Dels=0.0;FS=1.127;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.359;QD=11.67;ReadPosRankSum=0.726;SOR=0.817	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.525:61:62:2369:0:0:0.0,-16.8042,-213.37:0:0:61:60,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:118.7625:241:158:6110:83:3184:-221.132,0.0,-484.331:83:34:241:153,82:38.0:0.354:2:2840,0,6124:.:1:1:.:.:1:-0.0138116
chr2	12002854	.	C	A	6476.735000000001	REJECT	NS=2;DP=393;DPB=448.0;AC=2;AN=4;AF=0.5;RO=219;AO=229;PRO=0.0;PAO=0.0;QR=8313;QA=8888;PQR=0.0;PQA=0.0;SRF=92;SRR=127;SAF=96;SAR=133;SRP=15.1567;SAP=15.9917;AB=0.511161;ABP=3.495;RUN=1;RPP=7.19204;RPPR=3.02022;RPL=125.0;RPR=104.0;EPP=20.5433;EPPR=33.0044;DPRA=0.0;ODDS=314.376;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991266;PAIREDR=0.995434;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.845;Dels=0.0;FS=0.368;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7515;QD=18.09;ReadPosRankSum=1.0355;SOR=0.7385;ClippingRankSum=-1.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:50:1860:58:2288:-176.651,0.0,-138.152:58:54:107:49,58:1916,0,1646:1:.:1:.:.:.:-0.000507812	0/1:129.501:339:169:6453:171:6600:-501.527,0.0,-488.322:170:50:339:169,169:6296,0,6229:.:1:1:.:.:.:-0.0138116
chr2	13620587	.	A	G	5041.545	REJECT	NS=2;DP=308;DPB=357.0;AC=2;AN=4;AF=0.5;RO=179;AO=178;PRO=0.0;PAO=0.0;QR=6929;QA=6838;PQR=0.0;PQA=0.0;SRF=58;SRR=121;SAF=67;SAR=111;SRP=51.1588;SAP=26.6281;AB=0.498599;ABP=3.01638;RUN=1;RPP=3.79105;RPPR=7.38964;RPL=93.0;RPR=85.0;EPP=28.824;EPPR=10.5923;DPRA=0.0;ODDS=267.782;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994382;PAIREDR=0.988827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6405;Dels=0.0;FS=2.5465;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.385;QD=16.615;ReadPosRankSum=0.3545;SOR=0.488;ClippingRankSum=0.81	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.964:94:55:2105:42:1603:-118.007,0.0,-163.192:41:44:94:50,41:1320,0,1654:1:.:1:.:.:.:-0.000507812	0/1:119.964:259:124:4824:136:5235:-400.444,0.0,-363.497:135:52:259:124,135:5037,0,4642:.:1:1:.:.:.:-0.0138116
chr2	15983164	.	C	T	5612.79	REJECT	NS=2;DP=371;DPB=418.0;AC=2;AN=4;AF=0.5;RO=219;AO=199;PRO=0.0;PAO=0.0;QR=8471;QA=7570;PQR=0.0;PQA=0.0;SRF=116;SRR=103;SAF=109;SAR=90;SRP=4.686;SAP=6.9495;AB=0.476077;ABP=5.08826;RUN=1;RPP=3.02121;RPPR=3.49615;RPL=99.0;RPR=100.0;EPP=3.54498;EPPR=8.25555;DPRA=0.0;ODDS=233.227;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98995;PAIREDR=0.995434;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.415;Dels=0.0;FS=1.3095;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.549;QD=15.53;ReadPosRankSum=0.5565;SOR=0.8015;ClippingRankSum=0.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:56:2188:38:1412:-101.629,0.0,-171.49:37:39:93:56,36:1206,0,2025:1:.:1:.:.:.:-0.000507812	0/1:129.501:324:163:6283:161:6158:-466.142,0.0,-477.354:161:50:324:163,161:5944,0,6035:.:1:1:.:.:.:-0.0138116
chr2	15983501	.	T	C	13729.05	REJECT	NS=2;DP=364;DPB=413.0;AC=4;AN=4;AF=1.0;RO=0;AO=413;PRO=0.0;PAO=0.0;QR=0;QA=15692;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=206;SAR=207;SRP=0.0;SAP=3.01556;AB=0.0;ABP=0.0;RUN=1;RPP=5.32899;RPPR=0.0;RPL=217.0;RPR=196.0;EPP=3.64649;EPPR=0.0;DPRA=0.0;ODDS=62.952;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.983051;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.6975;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.83;SOR=0.7345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:94:3589:-323.063,-25.4646,0.0:90:100:90:0,87:3613,261,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:317:0:0:319:12103:-1088.48,-86.2927,0.0:317:100:317:0,316:13416,930,0:.:1:1:.:.:.:-0.0138116
chr2	15983519	.	A	G	3143.3	PASS	SOMATIC;NS=2;DP=408;DPB=408.0;AC=1;AN=3;AF=0.25;RO=290;AO=118;PRO=0.0;PAO=0.0;QR=10983;QA=4490;PQR=0.0;PQA=0.0;SRF=149;SRR=141;SAF=55;SAR=63;SRP=3.48952;SAP=4.18805;AB=0.383117;ABP=39.5587;RUN=1;RPP=3.08391;RPPR=4.08855;RPL=60.0;RPR=58.0;EPP=10.3712;EPPR=4.47792;DPRA=3.08;ODDS=63.344;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991525;PAIREDR=0.982759;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.36;Dels=0.0;FS=3.23;HaplotypeScore=7.8434;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.519;QD=13.18;ReadPosRankSum=-0.038;SOR=0.73	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:99:100:3798:0:0:0.0,-27.084,-341.856:0:0:99:98,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:305:190:7185:118:4490:-320.468,0.0,-562.882:117:38:305:183,110:38.0:0.367:2:4060,0,7008:.:1:1:.:.:1:-0.0138116
chr2	18013072	.	A	G	7584.41	REJECT	NS=2;DP=299;DPB=337.0;AC=2;AN=4;AF=0.5;RO=89;AO=248;PRO=0.0;PAO=0.0;QR=3471;QA=9625;PQR=0.0;PQA=0.0;SRF=62;SRR=27;SAF=164;SAR=84;SRP=32.8985;SAP=59.0483;AB=0.735905;ABP=165.909;RUN=1;RPP=32.4653;RPPR=18.2594;RPL=95.0;RPR=153.0;EPP=15.6539;EPPR=3.62026;DPRA=0.0;ODDS=211.56;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991935;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.2175;Dels=0.0;FS=0.314;HaplotypeScore=6.9309;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.169;QD=24.255;ReadPosRankSum=-0.5755;SOR=0.641;ClippingRankSum=1.28	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:42:1627:33:1303:-96.9763,0.0,-126.165:33:44:74:40,33:1201,0,1406:1:.:1:.:.:.:-0.000507812	0/1:129.501:262:47:1844:215:8322:-677.559,0.0,-94.9088:215:82:262:47,215:8527,0,1289:.:1:1:.:.:.:-0.0138116
chr2	19514304	.	T	G	8245.630000000001	REJECT	NS=2;DP=366;DPB=417.0;AC=3;AN=4;AF=0.75;RO=119;AO=298;PRO=0.0;PAO=0.0;QR=4552;QA=11268;PQR=0.0;PQA=0.0;SRF=70;SRR=49;SAF=146;SAR=152;SRP=11.0575;SAP=3.27263;AB=0.623418;ABP=44.818;RUN=1;RPP=4.87573;RPPR=3.02855;RPL=141.0;RPR=157.0;EPP=59.4394;EPPR=11.0575;DPRA=0.0;ODDS=63.949;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.386;Dels=0.0;FS=3.4745;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.397;QD=26.915;ReadPosRankSum=0.612;SOR=0.641	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.925:99:0:0:101:3797:-341.757,-27.3467,0.0:99:100:99:0,97:4020,291,0:1:.:1:.:.:.:-0.000507812	0/1:118.925:316:119:4552:197:7471:-586.395,0.0,-323.886:197:62:316:119,197:7356,0,4170:.:1:1:.:.:.:-0.0138116
chr2	19514400	.	C	T	2301.04	PASS	SOMATIC;NS=2;DP=228;DPB=228.0;AC=1;AN=3;AF=0.25;RO=146;AO=82;PRO=0.0;PAO=0.0;QR=5537;QA=3194;PQR=0.0;PQA=0.0;SRF=32;SRR=114;SAF=27;SAR=55;SRP=103.017;SAP=23.7717;AB=0.476744;ABP=3.81829;RUN=1;RPP=37.3302;RPPR=53.0434;RPL=59.0;RPR=23.0;EPP=3.11623;EPPR=3.06979;DPRA=3.07143;ODDS=35.9001;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.403;Dels=0.0;FS=7.698;HaplotypeScore=4.9239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.75;QD=17.82;ReadPosRankSum=-0.881;SOR=0.3	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.854:55:56:2081:0:0:0.0,-15.1653,-187.462:0:0:55:55,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:172:90:3456:82:3194:-240.756,0.0,-264.34:82:48:172:89,79:39.0:0.461:2:3094,0,3350:.:1:1:.:.:1:-0.0138116
chr2	25462327	.	C	G	2016.29	REJECT	NS=2;DP=345;DPB=391.0;AC=2;AN=4;AF=0.5;RO=291;AO=100;PRO=0.0;PAO=0.0;QR=11187;QA=3881;PQR=0.0;PQA=0.0;SRF=186;SRR=105;SAF=57;SAR=43;SRP=51.9692;SAP=7.26639;AB=0.255754;ABP=205.613;RUN=1;RPP=3.79203;RPPR=30.7768;RPL=47.0;RPR=53.0;EPP=8.56927;EPPR=3.19685;DPRA=0.0;ODDS=227.822;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4735;Dels=0.0;FS=3.4215;HaplotypeScore=1.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7115;QD=11.315;ReadPosRankSum=-0.008;SOR=0.4145;ClippingRankSum=0.075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.017:91:44:1628:48:1861:-142.615,0.0,-121.617:47:52:91:44,47:1694,0,1530:1:.:1:.:.:.:-0.000507812	0/1:124.017:299:247:9559:52:2020:-100.718,0.0,-778.774:52:17:299:247,52:1380,0,9767:.:1:1:.:.:.:-0.0138116
chr2	25463483	.	G	A	6493.165000000001	REJECT	NS=2;DP=286;DPB=326.0;AC=3;AN=4;AF=0.75;RO=96;AO=230;PRO=0.0;PAO=0.0;QR=3702;QA=8892;PQR=0.0;PQA=0.0;SRF=62;SRR=34;SAF=129;SAR=101;SRP=20.744;SAP=10.4122;AB=0.611336;ABP=29.6042;RUN=1;RPP=79.4839;RPPR=35.6729;RPL=70.0;RPR=160.0;EPP=3.0103;EPPR=5.27225;DPRA=0.0;ODDS=50.2989;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.351;Dels=0.0;FS=4.7415;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.556;QD=23.91;ReadPosRankSum=0.964;SOR=0.762	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:3033:-273.095,-21.4186,0.0:78:100:78:0,78:3311,234,0:1:.:1:.:.:.:-0.000507812	0/1:129.501:247:96:3702:151:5859:-460.133,0.0,-266.087:151:61:247:96,151:5825,0,3384:.:1:1:.:.:.:-0.0138116
chr2	25469502	.	C	T	2240.13	REJECT	NS=2;DP=376;DPB=427.0;AC=2;AN=4;AF=0.5;RO=317;AO=110;PRO=0.0;PAO=0.0;QR=12215;QA=4247;PQR=0.0;PQA=0.0;SRF=175;SRR=142;SAF=65;SAR=45;SRP=10.47;SAP=10.9066;AB=0.257611;ABP=220.915;RUN=1;RPP=5.85295;RPPR=3.01715;RPL=49.0;RPR=61.0;EPP=4.98437;EPPR=3.01715;DPRA=0.0;ODDS=232.486;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981818;PAIREDR=0.987382;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.016;Dels=0.0;FS=1.2955;HaplotypeScore=8.8299;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.565;QD=11.69;ReadPosRankSum=0.075;SOR=0.7705;ClippingRankSum=-0.57	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4595:99:46:1765:55:2129:-164.252,0.0,-131.493:54:54:99:45,53:1913,0,1612:1:.:1:.:.:.:-0.000507812	0/1:117.4595:325:271:10450:55:2118:-102.222,0.0,-851.595:54:17:325:271,54:1378,0,10695:.:1:1:.:.:.:-0.0138116
chr2	25469913	.	C	T	7127.115	REJECT	NS=2;DP=314;DPB=369.0;AC=3;AN=4;AF=0.75;RO=100;AO=269;PRO=0.0;PAO=0.0;QR=3804;QA=10156;PQR=0.0;PQA=0.0;SRF=57;SRR=43;SAF=167;SAR=102;SRP=7.26639;SAP=37.1161;AB=0.616858;ABP=33.9683;RUN=1;RPP=66.9517;RPPR=41.3151;RPL=90.0;RPR=179.0;EPP=10.7679;EPPR=8.56927;DPRA=0.0;ODDS=68.2834;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992565;PAIREDR=0.98;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.23;Dels=0.0;FS=5.344;HaplotypeScore=3.8487;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.854;QD=26.7;ReadPosRankSum=0.492;SOR=1.0675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.4835:106:0:0:108:4017:-361.532,-29.2292,0.0:106:100:106:0,105:4258,315,0:1:.:1:.:.:.:-0.000507812	0/1:119.4835:260:100:3804:161:6139:-481.526,0.0,-271.525:160:62:260:99,160:6017,0,3452:.:1:1:.:.:.:-0.0138116
chr2	29318077	.	A	G	6215.895	REJECT	NS=2;DP=382;DPB=442.0;AC=2;AN=4;AF=0.5;RO=221;AO=221;PRO=0.0;PAO=0.0;QR=8542;QA=8558;PQR=0.0;PQA=0.0;SRF=97;SRR=124;SAF=115;SAR=106;SRP=10.1732;SAP=3.80618;AB=0.5;ABP=3.0103;RUN=1;RPP=3.49176;RPPR=3.25594;RPL=107.0;RPR=114.0;EPP=4.67084;EPPR=3.25594;DPRA=0.0;ODDS=387.632;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995475;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6975;Dels=0.0;FS=8.6565;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6975;QD=18.205;ReadPosRankSum=-0.851;SOR=0.8;ClippingRankSum=-0.886	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:59:2235:60:2329:-177.356,0.0,-168.899:59:50:118:58,59:2135,0,1982:1:.:1:.:.:.:-0.000507812	0/1:129.501:323:162:6307:161:6229:-472.752,0.0,-479.781:161:50:323:162,161:6023,0,6093:.:1:1:.:.:.:-0.0138116
chr2	29318100	.	T	A	6131.375	REJECT	NS=2;DP=395;DPB=460.0;AC=2;AN=4;AF=0.5;RO=232;AO=228;PRO=0.0;PAO=0.0;QR=8810;QA=8634;PQR=0.0;PQA=0.0;SRF=95;SRR=137;SAF=109;SAR=119;SRP=19.521;SAP=3.9627;AB=0.495652;ABP=3.08583;RUN=1;RPP=4.877;RPPR=10.3484;RPL=121.0;RPR=107.0;EPP=3.16268;EPPR=6.04287;DPRA=0.0;ODDS=399.886;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995614;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2895;Dels=0.0;FS=4.14;HaplotypeScore=8.7233;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.577;QD=17.715;ReadPosRankSum=0.233;SOR=0.5345;ClippingRankSum=-0.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.422:128:62:2323:67:2542:-193.821,0.0,-174.107:66:51:128:62,65:2318,0,2062:1:.:1:.:.:.:-0.000507812	0/1:117.422:331:170:6487:161:6092:-458.307,0.0,-493.855:161:49:331:170,161:5834,0,6243:.:1:1:.:.:.:-0.0138116
chr2	29416366	.	G	C	6006.88	REJECT	NS=2;DP=379;DPB=428.0;AC=2;AN=4;AF=0.5;RO=212;AO=216;PRO=0.0;PAO=0.0;QR=8109;QA=8239;PQR=0.0;PQA=0.0;SRF=101;SRR=111;SAF=100;SAR=116;SRP=4.03458;SAP=5.5839;AB=0.504673;ABP=3.09148;RUN=1;RPP=3.05051;RPPR=11.0407;RPL=109.0;RPR=107.0;EPP=3.37221;EPPR=6.32897;DPRA=0.0;ODDS=275.996;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99537;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0985;Dels=0.0;FS=3.394;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.7015;QD=18.37;ReadPosRankSum=-0.0125;SOR=0.6295;ClippingRankSum=-1.614	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:43:1636:54:2090:-161.847,0.0,-120.97:54:56:96:42,54:1866,0,1408:1:.:1:.:.:.:-0.000507812	0/1:129.501:331:169:6473:162:6149:-463.447,0.0,-492.605:162:49:331:169,162:5853,0,6250:.:1:1:.:.:.:-0.0138116
chr2	29416481	.	T	C	1788.38	REJECT	NS=2;DP=402;DPB=456.0;AC=2;AN=4;AF=0.5;RO=359;AO=97;PRO=0.0;PAO=0.0;QR=13698;QA=3674;PQR=0.0;PQA=0.0;SRF=171;SRR=188;SAF=41;SAR=56;SRP=4.75837;SAP=8.04722;AB=0.212719;ABP=329.893;RUN=1;RPP=9.47994;RPPR=20.001;RPL=57.0;RPR=40.0;EPP=4.82359;EPPR=5.67776;DPRA=0.0;ODDS=175.887;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.997214;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9055;Dels=0.0;FS=4.4015;HaplotypeScore=5.963;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.472;QD=8.895;ReadPosRankSum=0.1805;SOR=0.88;ClippingRankSum=1.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3355:107:61:2323:46:1758:-129.245,0.0,-180.09:46:43:107:61,46:1603,0,2128:1:.:1:.:.:.:-0.000507812	0/1:118.3355:349:298:11375:51:1916:-77.8564,0.0,-928.587:51:15:349:298,51:1099,0,11612:.:1:1:.:.:.:-0.0138116
chr2	29416572	.	T	C	12624.5	REJECT	NS=2;DP=336;DPB=385.0;AC=4;AN=4;AF=1.0;RO=1;AO=384;PRO=0.0;PAO=0.0;QR=2;QA=14549;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=194;SAR=190;SRP=5.18177;SAP=3.10078;AB=0.0;ABP=0.0;RUN=1;RPP=3.37221;RPPR=5.18177;RPL=188.0;RPR=196.0;EPP=12.0581;EPPR=5.18177;DPRA=0.0;ODDS=66.4318;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9974;MQMR=60.0;PAIRED=0.994792;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.25;SOR=0.7585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:1:2:96:3550:-319.752,-26.0728,0.0:94:99:94:0,92:3770,276,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:288:0:0:288:10999:-989.287,-77.963,0.0:288:100:288:0,288:12229,846,0:.:1:1:.:.:.:-0.0138116
chr2	29416615	.	G	A	2706.91	PASS	SOMATIC;NS=2;DP=346;DPB=346.0;AC=1;AN=3;AF=0.25;RO=244;AO=102;PRO=0.0;PAO=0.0;QR=9262;QA=3891;PQR=0.0;PQA=0.0;SRF=124;SRR=120;SAF=52;SAR=50;SRP=3.15269;SAP=3.09546;AB=0.373626;ABP=40.8798;RUN=1;RPP=4.37279;RPPR=3.33068;RPL=55.0;RPR=47.0;EPP=3.35092;EPPR=5.89373;DPRA=3.73973;ODDS=46.5487;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995902;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.519;Dels=0.0;FS=0.96;HaplotypeScore=4.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.511;QD=12.87;ReadPosRankSum=-0.286;SOR=0.678	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.055:72:73:2726:0:0:0.0,-19.7899,-245.494:0:0:72:72,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:122.0275:273:171:6536:102:3891:-276.054,0.0,-513.988:102:37:273:164,97:38.0:0.371:2:3541,0,6515:.:1:1:.:.:1:-0.0138116
chr2	29416794	.	G	A	1916.6	PASS	SOMATIC;NS=2;DP=225;DPB=225.0;AC=1;AN=3;AF=0.25;RO=153;AO=72;PRO=0.0;PAO=0.0;QR=5909;QA=2764;PQR=0.0;PQA=0.0;SRF=39;SRR=114;SAF=20;SAR=52;SRP=82.8438;SAP=33.8935;AB=0.413793;ABP=14.2421;RUN=1;RPP=17.6074;RPPR=14.9463;RPL=47.0;RPR=25.0;EPP=6.02623;EPPR=14.9463;DPRA=3.41176;ODDS=32.8217;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986928;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.503;Dels=0.0;FS=1.36;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.17;QD=14.69;ReadPosRankSum=-2.043;SOR=0.578	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.688:50:51:1944:0:0:0.0,-13.8283,-175.167:0:0:50:49,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:174:102:3965:72:2764:-201.532,0.0,-309.577:72:41:174:99,70:38.0:0.412:2:2584,0,3928:.:1:1:.:.:1:-0.0138116
chr2	29430942	.	GTC	G	1557.45	REJECT	NS=2;DP=368;DPB=404.857;AC=2;AN=4;AF=0.5;RO=277;AO=83;PRO=56.0;PAO=35.0;QR=10487;QA=2912;PQR=2015.5;PQA=1249.5;SRF=102;SRR=175;SAF=24;SAR=59;SRP=44.7857;SAP=35.0591;AB=0.225543;ABP=243.784;RUN=1;RPP=6.17594;RPPR=28.48;RPL=47.0;RPR=36.0;EPP=3.66436;EPPR=10.5438;DPRA=0.0;ODDS=79.4939;GTI=0;TYPE=del;CIGAR=1M2D11M;NUMALT=1;MEANALT=5.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.99639;technology.ILLUMINA=1.0;BaseQRankSum=-1.912;FS=10.557;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.396;QD=16.7;ReadPosRankSum=-0.442;SOR=1.682;ClippingRankSum=-1.435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:44:1655:48:1633:-128.1,0.0,-129.968:50:53:95:46,53:1841,0,1541:1:.:1:.:.:.:-0.000507812	0/1:160.002:274:233:8832:35:1279:-36.7662,0.0,-785.298:35:13:268:.:.:.:.:1:.:.:.:-0.0138116
chr2	29444095	.	C	T	9550.095000000001	REJECT	NS=2;DP=252;DPB=285.0;AC=4;AN=4;AF=1.0;RO=0;AO=285;PRO=0.0;PAO=0.0;QR=0;QA=10887;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=108;SAR=177;SRP=0.0;SAP=39.2853;AB=0.0;ABP=0.0;RUN=1;RPP=7.04086;RPPR=0.0;RPL=154.0;RPR=131.0;EPP=4.29794;EPPR=0.0;DPRA=0.0;ODDS=45.4787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.465;SOR=1.319	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.3245:65:0:0:66:2466:-222.083,-17.8761,0.0:65:100:65:0,65:2653,195,0:1:.:1:.:.:.:-0.000507812	1/1:124.3245:219:0:0:219:8421:-757.518,-59.315,0.0:219:100:219:0,219:9414,650,0:.:1:1:.:.:.:-0.0138116
chr2	29446202	.	G	A	4089.21	REJECT	NS=2;DP=239;DPB=268.0;AC=2;AN=4;AF=0.5;RO=125;AO=142;PRO=0.0;PAO=0.0;QR=4708;QA=5501;PQR=0.0;PQA=0.0;SRF=82;SRR=43;SAF=95;SAR=47;SRP=29.4328;SAP=38.2432;AB=0.529851;ABP=5.08454;RUN=1;RPP=47.6019;RPPR=15.6743;RPL=44.0;RPR=98.0;EPP=5.21236;EPPR=8.03074;DPRA=0.0;ODDS=186.303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4095;Dels=0.0;FS=0.2695;HaplotypeScore=9.7505;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.475;QD=18.89;ReadPosRankSum=1.3255;SOR=0.7315;ClippingRankSum=0.123	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:28:1074:28:1092:-83.1928,0.0,-81.5597:28:50:56:28,28:1019,0,988:1:.:1:.:.:.:-0.000507812	0/1:129.501:211:97:3634:114:4409:-339.88,0.0,-269.771:113:54:210:97,113:4268,0,3432:.:1:1:.:.:.:-0.0138116
chr2	29446701	.	T	C	5795.0650000000005	REJECT	NS=2;DP=358;DPB=423.0;AC=2;AN=4;AF=0.5;RO=212;AO=211;PRO=0.0;PAO=0.0;QR=8131;QA=8129;PQR=0.0;PQA=0.0;SRF=119;SRR=93;SAF=118;SAR=93;SRP=9.93443;SAP=9.44239;AB=0.498818;ABP=3.01543;RUN=1;RPP=3.8439;RPPR=9.93443;RPL=110.0;RPR=101.0;EPP=8.45442;EPPR=5.63246;DPRA=0.0;ODDS=418.483;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995261;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6385;Dels=0.0;FS=1.136;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2815;QD=17.295;ReadPosRankSum=0.4995;SOR=0.6365;ClippingRankSum=-1.46	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9785:127:66:2514:63:2416:-182.452,0.0,-191.301:62:48:127:65,61:2054,0,2253:1:.:1:.:.:.:-0.000507812	0/1:117.9785:293:146:5617:148:5713:-434.235,0.0,-425.592:148:50:293:145,148:5525,0,5354:.:1:1:.:.:.:-0.0138116
chr2	29446721	.	A	G	13943.0	REJECT	NS=2;DP=370;DPB=432.0;AC=4;AN=4;AF=1.0;RO=0;AO=432;PRO=0.0;PAO=0.0;QR=0;QA=16468;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=201;SRP=0.0;SAP=7.5342;AB=0.0;ABP=0.0;RUN=1;RPP=4.6389;RPPR=0.0;RPL=225.0;RPR=207.0;EPP=21.1059;EPPR=0.0;DPRA=0.0;ODDS=81.627;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997685;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.865;SOR=0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:123:0:0:124:4704:-423.312,-33.5751,0.0:123:100:123:0,122:5102,366,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:308:0:0:308:11764:-1058.08,-83.3807,0.0:308:100:308:0,308:13167,912,0:.:1:1:.:.:.:-0.0138116
chr2	29447108	.	G	A	10211.5	REJECT	NS=2;DP=370;DPB=416.0;AC=2;AN=4;AF=0.5;RO=81;AO=335;PRO=0.0;PAO=0.0;QR=3112;QA=12678;PQR=0.0;PQA=0.0;SRF=43;SRR=38;SAF=160;SAR=175;SRP=3.68051;SAP=4.46875;AB=0.805288;ABP=339.776;RUN=1;RPP=4.46875;RPPR=12.6881;RPL=175.0;RPR=160.0;EPP=3.01678;EPPR=3.03711;DPRA=0.0;ODDS=109.563;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99403;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.668;Dels=0.0;FS=1.958;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3755;QD=26.0;ReadPosRankSum=-0.4965;SOR=0.725;ClippingRankSum=0.79	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:42:1587:48:1819:-139.388,0.0,-118.466:46:52:88:42,44:1582,0,1497:1:.:1:.:.:.:-0.000507812	0/1:129.501:325:39:1525:287:10859:-888.435,0.0,-48.9164:286:88:325:39,286:11125,0,751:.:1:1:.:.:.:-0.0138116
chr2	29447253	.	A	G	2120.75	REJECT	NS=2;DP=382;DPB=438.0;AC=2;AN=4;AF=0.5;RO=338;AO=100;PRO=0.0;PAO=0.0;QR=12855;QA=3818;PQR=0.0;PQA=0.0;SRF=153;SRR=185;SAF=50;SAR=50;SRP=9.58896;SAP=3.0103;AB=0.228311;ABP=283.834;RUN=1;RPP=11.6962;RPPR=3.93542;RPL=40.0;RPR=60.0;EPP=3.35774;EPPR=3.036;DPRA=0.0;ODDS=124.493;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0275;Dels=0.0;FS=2.4095;HaplotypeScore=6.7793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.004;QD=10.65;ReadPosRankSum=0.445;SOR=0.951;ClippingRankSum=1.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.675:110:53:2027:58:2223:-170.011,0.0,-152.346:57:52:110:52,57:2085,0,1817:1:.:1:.:.:.:-0.000507812	0/1:117.675:327:285:10828:42:1595:-54.9607,0.0,-885.354:42:13:327:285,42:822,0,11047:.:1:1:.:.:.:-0.0138116
chr2	29448760	.	C	T	1884.145	REJECT	NS=2;DP=409;DPB=472.0;AC=2;AN=4;AF=0.5;RO=372;AO=100;PRO=0.0;PAO=0.0;QR=14179;QA=3735;PQR=0.0;PQA=0.0;SRF=168;SRR=204;SAF=42;SAR=58;SRP=10.5754;SAP=8.56927;AB=0.211864;ABP=343.379;RUN=1;RPP=3.35774;RPPR=4.50465;RPL=48.0;RPR=52.0;EPP=3.0103;EPPR=7.58674;DPRA=0.0;ODDS=121.923;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997312;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.666;Dels=0.0;FS=0.3465;HaplotypeScore=12.7872;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.663;QD=8.35;ReadPosRankSum=-0.5735;SOR=0.7445;ClippingRankSum=1.129	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4745:123:68:2614:57:2098:-154.947,0.0,-201.399:55:45:123:67,54:1776,0,2492:1:.:1:.:.:.:-0.000507812	0/1:120.4745:346:304:11565:43:1637:-53.291,0.0,-946.247:43:12:346:303,43:811,0,11857:.:1:1:.:.:.:-0.0138116
chr2	29448846	.	C	G	5681.790000000001	REJECT	NS=2;DP=358;DPB=406.0;AC=2;AN=4;AF=0.5;RO=199;AO=207;PRO=0.0;PAO=0.0;QR=7520;QA=7706;PQR=0.0;PQA=0.0;SRF=107;SRR=92;SAF=97;SAR=110;SRP=5.46548;SAP=4.78314;AB=0.509852;ABP=3.3526;RUN=1;RPP=3.52432;RPPR=3.89417;RPL=100.0;RPR=107.0;EPP=9.56668;EPPR=5.46548;DPRA=0.0;ODDS=298.782;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995169;PAIREDR=0.98995;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7725;Dels=0.0;FS=3.7525;HaplotypeScore=8.6703;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.013;QD=17.695;ReadPosRankSum=0.2805;SOR=0.7425;ClippingRankSum=-0.433	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4365:92:45:1733:49:1784:-135.134,0.0,-130.542:48:52:92:43,48:1627,0,1461:1:.:1:.:.:.:-0.000507812	0/1:119.4365:311:154:5787:158:5922:-448.199,0.0,-436.075:157:50:311:154,157:5628,0,5530:.:1:1:.:.:.:-0.0138116
chr2	29449005	.	G	T	2999.74	PASS	SOMATIC;NS=2;DP=391;DPB=391.0;AC=1;AN=3;AF=0.25;RO=279;AO=112;PRO=0.0;PAO=0.0;QR=10668;QA=4277;PQR=0.0;PQA=0.0;SRF=120;SRR=159;SAF=54;SAR=58;SRP=14.8483;SAP=3.32051;AB=0.382253;ABP=38.2949;RUN=1;RPP=3.70827;RPPR=18.771;RPL=59.0;RPR=53.0;EPP=3.08785;EPPR=4.76149;DPRA=2.9898;ODDS=62.1241;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.435;Dels=0.0;FS=3.276;HaplotypeScore=11.6834;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.862;QD=13.19;ReadPosRankSum=0.385;SOR=0.527	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.985:95:98:3747:0:0:0.0,-26.5542,-337.277:0:0:95:93,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:119.4925:293:181:6921:112:4277:-305.328,0.0,-543.195:112:38:293:172,107:38.0:0.386:2:3894,0,6909:.:1:1:.:.:1:-0.0138116
chr2	29449344	.	CAA	C	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=26.9354;QR=0;QA=2;PQR=1062.05;PQA=892.55;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=del;CIGAR=1M2D40M;NUMALT=21;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-73.1318,-82.6698:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:2:-451.116,-450.853,-470.3:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449344	.	CAAA	C	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=22.9354;QR=0;QA=27;PQR=1062.05;PQA=787.55;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=del;CIGAR=1M3D39M;NUMALT=21;MEANALT=14.0;LEN=3;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-75.8376,-101.106:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:27:-451.116,-453.305,-530.455:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449344	.	CAAAA	C	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=4;PRO=31.4354;PAO=22.3798;QR=0;QA=73;PQR=1062.05;PQA=757.327;SRF=0;SRR=0;SAF=1;SAR=3;SRP=0.0;SAP=5.18177;AB=0.222222;ABP=15.074;RUN=1;RPP=3.0103;RPPR=0.0;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=del;CIGAR=1M4D38M;NUMALT=21;MEANALT=14.0;LEN=4;MQM=62.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.493;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=55.96;MQRankSum=2.366;QD=4.74;RPA=24,20;RU=A;ReadPosRankSum=-0.493;SOR=0.495;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-88.3235,-269.71:0:0:9:.:.:.:.:1:.:.:.:-0.000507812	./1:122.372:47:0:0:4:73:-451.116,-469.601,-721.958:11:39:25:14,18:530,0,204:.:1:1:.:.:.:-0.0138116
chr2	29449344	.	CAAAAA	C	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=31.4354;PAO=19.1441;QR=0;QA=29;PQR=1062.05;PQA=655.699;SRF=0;SRR=0;SAF=1;SAR=1;SRP=0.0;SAP=3.0103;AB=0.0740741;ABP=45.5551;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=del;CIGAR=1M5D37M;NUMALT=21;MEANALT=11.5;LEN=5;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.0;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=56.23;MQRankSum=0.0;QD=6.35;ReadPosRankSum=0.731;SOR=3.258;ClippingRankSum=0.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:89.09595:11:0:0:1:15:-73.1276,-98.3334,-360.986:3:28:11:7,6:165,0,126:1:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:14:-451.116,-512.113,-1105.19:1:6:18:.:.:.:.:1:.:.:.:-0.0138116
chr2	29449344	.	CAAAAAAA	C	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=18.0495;QR=0;QA=2;PQR=1062.05;PQA=619.194;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=del;CIGAR=1M7D35M;NUMALT=21;MEANALT=14.0;LEN=7;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-126.495,-663.783:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:2:-451.116,-547.595,-1503.78:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449361	.	AAAAAAAAGAGGAGGAG	GGGGAGGAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=2.26163;QR=0;QA=15;PQR=1062.05;PQA=68.1857;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M8D17M1X6M1X9M;NUMALT=21;MEANALT=14.0;LEN=35;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-171.786,-1185.85:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:15:-451.116,-710.875,-3401.52:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449362	.	AAAAAAAGAGGAGGAG	GAGGAGGAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=3.07116;QR=0;QA=16;PQR=1062.05;PQA=83.7095;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M7D25M1X9M;NUMALT=21;MEANALT=9.0;LEN=36;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:16:-73.1276,-161.409,-1121.45:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-697.064,-3264.37:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449362	.	AAAAAAAGAGGAGGAGAAT	GAGGAGGAGAAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=2.84199;QR=0;QA=16;PQR=1062.05;PQA=69.0429;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M7D28M1X6M;NUMALT=21;MEANALT=14.0;LEN=36;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-164.922,-1125.74:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:16:-451.116,-738.423,-3728.03:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449362	.	AAAAAAAGAGGAGGAGAAT	GAGGAGGAGAAC	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=1.84199;QR=0;QA=16;PQR=1062.05;PQA=53.0429;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M7D28M1X6M;NUMALT=21;MEANALT=9.0;LEN=36;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:16:-73.1276,-164.922,-1125.74:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-739.592,-3729.46:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449363	.	AAAAAAGAGGA	GGG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=4.21198;QR=0;QA=2;PQR=1062.05;PQA=135.39;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=18M8D3M1X13M;NUMALT=21;MEANALT=9.0;LEN=35;MQM=58.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:2:-73.1276,-134.455,-764.253:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-656.951,-2762.92:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449364	.	AAAAAGAGGAGGAG	GGGGAGGAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=3.2991;QR=0;QA=15;PQR=1062.05;PQA=102.947;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M5D20M1X6M1X9M;NUMALT=21;MEANALT=14.0;LEN=38;MQM=40.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-140.368,-840.588:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:15:-451.116,-665.094,-2870.19:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449365	.	AAAAGA	GG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=8.5965;QR=0;QA=15;PQR=1062.05;PQA=263.394;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M4D21M1X16M;NUMALT=21;MEANALT=9.0;LEN=39;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:15:-73.1276,-107.585,-500.569:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-581.551,-1923.05:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449365	.	AAAAGAGGA	GGGGG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=31.4354;PAO=5.53936;QR=0;QA=28;PQR=1062.05;PQA=178.194;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.0740741;ABP=45.5551;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M4D21M1X2M1X13M;NUMALT=21;MEANALT=11.5;LEN=39;MQM=62.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:14:-73.1276,-113.896,-559.376:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:14:-451.116,-601.421,-2164.98:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449365	.	AAAAGAGGAGGAG	GAGGAGGAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=31.4354;PAO=4.75148;QR=0;QA=32;PQR=1062.05;PQA=139.043;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.111111;ABP=26.6552;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M4D28M1X9M;NUMALT=21;MEANALT=14.0;LEN=39;MQM=65.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-129.268,-755.559:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:2:32:-451.116,-626.365,-2502.62:2:11:18:.:.:1:.:.:.:-0.0138116
chr2	29449365	.	AAAAGAGGAGGAGAATGGGAGC	GGGGGGGAAAAGGGGAGA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=4;AF=0.5;RO=0;AO=1;PRO=31.4354;PAO=3.47469;QR=0;QA=15;PQR=1062.05;PQA=100.44;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M4D21M1X2M1X3M1X2M1X5M1X;NUMALT=21;MEANALT=9.0;LEN=39;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:79.1919:9:0:0:1:15:-73.1276,0.0,-754.745:1:11:9:.:.:1:.:.:.:-0.000507812	0/1:145.744:18:0:0:0:0:-451.116,0.0,-2852.5:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449366	.	AAAGAGGA	GAGGG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=8.09491;QR=0;QA=15;PQR=1062.05;PQA=247.416;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M3D25M1X13M;NUMALT=21;MEANALT=14.0;LEN=40;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-100.239,-389.584:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:15:-451.116,-580.892,-1968.21:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449366	.	AAAGAGGA	GGGGG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=7.09491;QR=0;QA=25;PQR=1062.05;PQA=232.416;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M3D22M1X2M1X13M;NUMALT=21;MEANALT=14.0;LEN=40;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-100.239,-389.584:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:25:-451.116,-581.072,-1968.64:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449366	.	AAAGAGGAGGAG	GAGGAGGAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=6.30704;QR=0;QA=16;PQR=1062.05;PQA=193.265;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M3D29M1X9M;NUMALT=21;MEANALT=14.0;LEN=40;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-114.619,-584.521:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:16:-451.116,-608.176,-2308.72:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449366	.	AAAGAGGAGGAGAAT	GAGGGGGAAAAA	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=4.9112;QR=0;QA=15;PQR=1062.05;PQA=158.848;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=1M3D25M1X3M1X2M1X6M;NUMALT=21;MEANALT=9.0;LEN=40;MQM=41.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:15:-73.1276,-120.262,-609.023:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-655.112,-2802.24:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449366	.	AAAGAGGAGGAGAATGGGA	GGAGGAGAATGGGG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=4.4112;QR=0;QA=2;PQR=1062.05;PQA=141.948;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.111111;ABP=14.8328;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=21M5D14M1X2M;NUMALT=21;MEANALT=9.0;LEN=38;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:1:2:-73.1276,-132.283,-736.716:1:11:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:0:0:-451.116,-698.419,-3284.63:0:0:18:.:.:1:.:.:.:-0.0138116
chr2	29449368	.	AGAGGAGGAGAAT	GGAGGAAAAG	5210.39	REJECT	NS=2;DP=27;DPB=118.953;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=31.4354;PAO=12.4112;QR=0;QA=14;PQR=1062.05;PQA=342.348;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0555556;ABP=33.8935;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=18.2346;GTI=0;TYPE=complex;CIGAR=23M3D7M1X2M1X6M;NUMALT=21;MEANALT=14.0;LEN=40;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1919:9:0:0:0:0:-73.1276,-118.185,-586.728:0:0:9:.:.:1:.:.:.:-0.000507812	./1:145.744:18:0:0:1:14:-451.116,-646.27,-2723.32:1:6:18:.:.:1:.:.:.:-0.0138116
chr2	29449423	.	G	A	6003.585	REJECT	NS=2;DP=276;DPB=315.0;AC=3;AN=4;AF=0.75;RO=90;AO=225;PRO=0.0;PAO=0.0;QR=3201;QA=8210;PQR=0.0;PQA=0.0;SRF=69;SRR=21;SAF=158;SAR=67;SRP=58.6;SAP=82.9301;AB=0.623431;ABP=34.6375;RUN=1;RPP=9.04217;RPPR=5.42305;RPL=100.0;RPR=125.0;EPP=3.25157;EPPR=3.39634;DPRA=0.0;ODDS=48.2523;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0667;MQMR=60.1111;PAIRED=0.995556;PAIREDR=0.966667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.038;Dels=0.0;FS=1.3605;HaplotypeScore=10.6062;MLEAC=1;MLEAF=0.75;MQ=60.035;MQRankSum=1.634;QD=28.2;ReadPosRankSum=0.538;SOR=0.906	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:70:0:0:76:2690:-242.172,-20.5297,0.0:70:100:70:0,65:2612,195,0:1:.:1:.:.:.:-0.000507812	0/1:129.501:238:90:3201:149:5520:-432.279,0.0,-223.323:149:62:238:88,149:5436,0,2747:.:1:1:.:.:.:-0.0138116
chr2	29449819	.	C	T	2720.43	PASS	SOMATIC;NS=2;DP=418;DPB=418.0;AC=1;AN=3;AF=0.25;RO=315;AO=103;PRO=0.0;PAO=0.0;QR=12060;QA=4014;PQR=0.0;PQA=0.0;SRF=143;SRR=172;SAF=39;SAR=64;SRP=8.80779;SAP=16.1867;AB=0.338816;ABP=71.6117;RUN=1;RPP=3.03138;RPPR=25.4075;RPL=52.0;RPR=51.0;EPP=4.71796;EPPR=3.01719;DPRA=2.66667;ODDS=72.1109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.993651;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.245;Dels=0.0;FS=7.51;HaplotypeScore=7.8057;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.109;QD=11.76;ReadPosRankSum=0.146;SOR=1.14	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.646:110:114:4388:0:0:0.0,-30.8914,-394.91:0:0:110:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:122.823:304:201:7672:103:4014:-278.724,0.0,-607.714:103:34:304:195,101:38.0:0.346:2:3602,0,7648:.:1:1:.:.:1:-0.0138116
chr2	29451790	.	T	C	90.6937	REJECT	NS=2;DP=422;DPB=435.0;AC=2;AN=2;AF=0.0;RO=359;AO=17;PRO=13.0;PAO=5.5;QR=11200;QA=238;PQR=334.0;PQA=136.5;SRF=189;SRR=170;SAF=17;SAR=0;SRP=5.19387;SAP=39.9253;AB=0.0625;ABP=189.214;RUN=1;RPP=18.4661;RPPR=3.06474;RPL=14.0;RPR=3.0;EPP=18.4661;EPPR=8.82307;DPRA=0.0;ODDS=16.9701;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994429;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.6143:112:87:2695:7:98:-14.5739,-31.6965,-252.97:7:6:110:.:.:1:.:.:.:-0.000507812	./1:160.002:310:272:8505:10:140:0.0,-69.1887,-817.307:10:3:306:.:.:1:.:.:.:-0.0138116
chr2	29451790	.	TCCA	CCCC	90.6937	REJECT	NS=2;DP=422;DPB=435.0;AC=2;AN=2;AF=0.0;RO=359;AO=9;PRO=13.0;PAO=0.0;QR=11200;QA=131;PQR=334.0;PQA=0.0;SRF=189;SRR=170;SAF=9;SAR=0;SRP=5.19387;SAP=22.5536;AB=0.0535714;ABP=196.892;RUN=1;RPP=22.5536;RPPR=3.06474;RPL=9.0;RPR=0.0;EPP=22.5536;EPPR=8.82307;DPRA=0.0;ODDS=16.9701;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=3;MEANALT=5.5;LEN=4;MQM=57.7778;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994429;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.6143:112:87:2695:6:101:-14.5739,-5.58099,-236.984:6:5:110:.:.:1:.:.:.:-0.000507812	./1:160.002:310:272:8505:3:30:0.0,-67.1252,-850.687:3:1:306:.:.:1:.:.:.:-0.0138116
chr2	29451793	.	A	C	90.6937	REJECT	NS=2;DP=422;DPB=435.0;AC=2;AN=3;AF=0.25;RO=359;AO=31;PRO=13.0;PAO=7.5;QR=11200;QA=503;PQR=334.0;PQA=197.5;SRF=189;SRR=170;SAF=29;SAR=2;SRP=5.19387;SAP=54.0749;AB=0.0892857;ABP=167.112;RUN=1;RPP=8.68415;RPPR=3.06474;RPL=20.0;RPR=11.0;EPP=8.68415;EPPR=8.82307;DPRA=0.0;ODDS=16.9701;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994429;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:73.6143:112:87:2695:10:169:-14.5739,0.0,-226.382:10:9:110:.:.:1:.:.:.:-0.000507812	./1:160.002:310:272:8505:21:334:0.0,-38.6227,-758.085:21:7:306:.:.:1:.:.:.:-0.0138116
chr2	29451799	.	T	C	145.587	REJECT	NS=2;DP=417;DPB=429.25;AC=2;AN=2;AF=0.0;RO=313;AO=37;PRO=10.0;PAO=6.5;QR=9901;QA=529;PQR=222.0;PQA=108.0;SRF=132;SRR=181;SAF=37;SAR=0;SRP=19.6675;SAP=83.3548;AB=0.117117;ABP=144.352;RUN=1;RPP=10.1116;RPPR=5.51478;RPL=24.0;RPR=13.0;EPP=10.1116;EPPR=8.84483;DPRA=0.0;ODDS=9.9964;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99361;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.414:111:70:2364:13:170:-21.0385,-28.6653,-222.343:13:12:105:.:.:1:.:.:.:-0.000507812	./1:160.002:306:243:7537:24:359:0.0,-41.321,-683.955:24:8:295:.:.:1:.:.:.:-0.0138116
chr2	29451799	.	TCCG	CCCC	145.587	REJECT	NS=2;DP=417;DPB=429.25;AC=2;AN=2;AF=0.0;RO=313;AO=26;PRO=10.0;PAO=1.5;QR=9901;QA=383;PQR=222.0;PQA=9.0;SRF=132;SRR=181;SAF=26;SAR=0;SRP=19.6675;SAP=59.4686;AB=0.0990991;ABP=157.967;RUN=1;RPP=19.3799;RPPR=5.51478;RPL=20.0;RPR=6.0;EPP=19.3799;EPPR=8.84483;DPRA=0.0;ODDS=9.9964;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=3;MEANALT=8.5;LEN=4;MQM=59.2308;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99361;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.414:111:70:2364:11:154:-21.0385,-3.44707,-201.747:11:10:105:.:.:1:.:.:.:-0.000507812	./1:160.002:306:243:7537:15:229:0.0,-26.6525,-697.676:15:5:295:.:.:1:.:.:.:-0.0138116
chr2	29451802	.	G	C	145.587	REJECT	NS=2;DP=417;DPB=429.25;AC=2;AN=3;AF=0.25;RO=313;AO=24;PRO=10.0;PAO=5.0;QR=9901;QA=395;PQR=222.0;PQA=123.0;SRF=132;SRR=181;SAF=24;SAR=0;SRP=19.6675;SAP=55.1256;AB=0.0990991;ABP=157.967;RUN=1;RPP=12.0581;RPPR=5.51478;RPL=17.0;RPR=7.0;EPP=12.0581;EPPR=8.84483;DPRA=0.0;ODDS=9.9964;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99361;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:43.414:111:70:2364:11:187:-21.0385,0.0,-195.121:11:10:105:.:.:1:.:.:.:-0.000507812	./1:160.002:306:243:7537:13:208:0.0,-26.2542,-661.671:13:4:295:.:.:1:.:.:.:-0.0138116
chr2	29455199	.	A	T	1781.365	REJECT	NS=2;DP=353;DPB=407.0;AC=2;AN=4;AF=0.5;RO=315;AO=92;PRO=0.0;PAO=0.0;QR=12093;QA=3513;PQR=0.0;PQA=0.0;SRF=169;SRR=146;SAF=49;SAR=43;SRP=6.65699;SAP=3.86001;AB=0.226044;ABP=268.33;RUN=1;RPP=12.4515;RPPR=12.4476;RPL=36.0;RPR=56.0;EPP=3.86001;EPPR=5.49888;DPRA=0.0;ODDS=143.907;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993651;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3685;Dels=0.0;FS=6.045;HaplotypeScore=2.9131;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3575;QD=8.79;ReadPosRankSum=0.058;SOR=0.9075;ClippingRankSum=-1.438	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:59:2246:49:1900:-141.736,0.0,-172.891:48:45:107:59,48:1599,0,2044:1:.:1:.:.:.:-0.000507812	0/1:129.501:299:256:9847:43:1613:-64.1142,0.0,-804.73:43:14:299:256,43:895,0,10103:.:1:1:.:.:.:-0.0138116
chr2	29455267	.	A	G	13067.7	REJECT	NS=2;DP=345;DPB=389.0;AC=4;AN=4;AF=1.0;RO=1;AO=388;PRO=0.0;PAO=0.0;QR=40;QA=14908;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=166;SAR=222;SRP=5.18177;SAP=20.5612;AB=0.0;ABP=0.0;RUN=1;RPP=11.9648;RPPR=5.18177;RPL=214.0;RPR=174.0;EPP=54.5884;EPPR=5.18177;DPRA=0.0;ODDS=58.6171;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.769;Dels=0.0;FS=1.797;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.571;QD=28.78;ReadPosRankSum=1.078;SOR=0.9245	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:87:3342:-300.866,-23.582,0.0:86:100:86:0,86:3505,259,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:302:1:40:301:11566:-1036.72,-78.191,0.0:301:100:302:1,301:12899,855,0:.:1:1:.:.:.:-0.0138116
chr2	29497967	.	G	A	1635.385	REJECT	NS=2;DP=301;DPB=354.0;AC=2;AN=4;AF=0.5;RO=273;AO=81;PRO=0.0;PAO=0.0;QR=10417;QA=3069;PQR=0.0;PQA=0.0;SRF=184;SRR=89;SAF=47;SAR=34;SRP=74.7962;SAP=7.5409;AB=0.228814;ABP=229.138;RUN=1;RPP=10.7579;RPPR=16.3812;RPL=32.0;RPR=49.0;EPP=17.1919;EPPR=22.1081;DPRA=0.0;ODDS=93.0801;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985348;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.18;Dels=0.0;FS=2.3115;HaplotypeScore=4.8568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.672;QD=8.76;ReadPosRankSum=0.933;SOR=0.403;ClippingRankSum=0.596	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9135:102:56:2159:48:1849:-138.235,0.0,-166.139:47:46:102:54,47:1577,0,1841:1:.:1:.:.:.:-0.000507812	0/1:118.9135:249:217:8258:33:1220:-42.0668,0.0,-675.137:33:13:249:216,33:610,0,8401:.:1:1:.:.:.:-0.0138116
chr2	29543663	.	T	C	13336.15	REJECT	NS=2;DP=356;DPB=408.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=0.0;PAO=0.0;QR=0;QA=15457;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=202;SAR=205;SRP=0.0;SAP=3.05832;AB=0.0;ABP=0.0;RUN=1;RPP=3.27173;RPPR=0.0;RPL=207.0;RPR=200.0;EPP=11.979;EPPR=0.0;DPRA=0.0;ODDS=68.5337;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995086;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8569;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.525;SOR=0.693	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:103:3895:-350.563,-27.8887,0.0:101:100:101:0,100:4107,300,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:305:0:0:304:11562:-1039.92,-82.2912,0.0:304:100:304:0,304:12847,891,0:.:1:1:.:.:.:-0.0138116
chr2	29940529	.	A	T	8633.905	REJECT	NS=2;DP=381;DPB=435.0;AC=3;AN=4;AF=0.75;RO=119;AO=316;PRO=0.0;PAO=0.0;QR=4424;QA=11763;PQR=0.0;PQA=0.0;SRF=61;SRR=58;SAF=170;SAR=146;SRP=3.17453;SAP=6.96843;AB=0.637195;ABP=56.6351;RUN=1;RPP=6.33623;RPPR=3.02855;RPL=147.0;RPR=169.0;EPP=17.5509;EPPR=6.09416;DPRA=0.0;ODDS=67.6716;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987342;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.175;Dels=0.0;FS=0.951;HaplotypeScore=9.798;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.684;QD=27.035;ReadPosRankSum=-0.386;SOR=0.836	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:107:3943:-354.887,-28.9635,0.0:104:100:104:0,101:3982,302,0:1:.:1:.:.:.:-0.000507812	0/1:129.501:328:119:4424:209:7820:-614.618,0.0,-309.149:209:64:328:119,209:7682,0,3907:.:1:1:.:.:.:-0.0138116
chr2	30143499	.	G	C	1653.46	REJECT	NS=1;DP=48;DPB=48.0;AC=2;AN=4;AF=1.0;RO=0;AO=48;PRO=0.0;PAO=0.0;QR=0;QA=1874;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=18;SAR=30;SRP=0.0;SAP=9.52472;AB=0.0;ABP=0.0;RUN=1;RPP=3.73412;RPPR=0.0;RPL=26.0;RPR=22.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=34.6113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.34;SOR=1.298	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.7465:48:0:0:48:1874:-168.884,-13.0315,0.0:48:100:48:0,48:2056,144,0:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-27.9849
chr2	30240720	.	A	G	14059.349999999999	REJECT	NS=2;DP=377;DPB=431.0;AC=4;AN=4;AF=1.0;RO=3;AO=428;PRO=0.0;PAO=0.0;QR=117;QA=16376;PQR=0.0;PQA=0.0;SRF=0;SRR=3;SAF=237;SAR=191;SRP=9.52472;SAP=13.7459;AB=0.0;ABP=0.0;RUN=1;RPP=4.65412;RPPR=3.73412;RPL=205.0;RPR=223.0;EPP=11.128;EPPR=3.73412;DPRA=0.0;ODDS=71.7069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.078;Dels=0.0;FS=5.2425;HaplotypeScore=3.9204;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.755;QD=32.575;ReadPosRankSum=1.152;SOR=0.6705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:0:0:108:4142:-372.803,-29.2668,0.0:107:100:107:0,106:4399,318,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:323:3:117:320:12234:-1089.82,-76.9237,0.0:320:99:323:3,320:13566,826,0:.:1:1:.:.:.:-0.0218746
chr2	30241053	.	T	C	14109.55	REJECT	NS=2;DP=369;DPB=423.0;AC=4;AN=4;AF=1.0;RO=0;AO=423;PRO=0.0;PAO=0.0;QR=0;QA=16271;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=198;SRP=0.0;SAP=6.75262;AB=0.0;ABP=0.0;RUN=1;RPP=3.13864;RPPR=0.0;RPL=209.0;RPR=214.0;EPP=7.9436;EPPR=0.0;DPRA=0.0;ODDS=69.1822;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.98818;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.97;SOR=0.859	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:104:3958:-356.243,-28.1704,0.0:103:100:103:0,102:4041,306,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:317:0:0:319:12313:-1107.5,-86.4145,0.0:317:100:317:0,316:13661,945,0:.:1:1:.:.:.:-0.0218746
chr2	30243877	.	C	G	4396.29	REJECT	NS=1;DP=140;DPB=140.0;AC=2;AN=4;AF=1.0;RO=0;AO=137;PRO=0.0;PAO=0.0;QR=0;QA=4969;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=44;SAR=93;SRP=0.0;SAP=41.0665;AB=0.0;ABP=0.0;RUN=1;RPP=3.78696;RPPR=0.0;RPL=65.0;RPR=72.0;EPP=3.15295;EPPR=0.0;DPRA=0.0;ODDS=89.8618;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.927;MQMR=0.0;PAIRED=0.978102;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.43;SOR=1.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:134:0:0:137:4969:-447.083,-37.0265,0.0:132:100:132:0,128:5177,383,0:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	30243931	.	C	CTT	8.42138	REJECT	NS=1;DP=52;DPB=83.1429;AC=1;AN=3;AF=0.0;RO=20;AO=3;PRO=16.25;PAO=16.25;QR=704;QA=69;PQR=563.917;PQA=563.917;SRF=6;SRR=14;SAF=1;SAR=2;SRP=9.95901;SAP=3.73412;AB=0.0576923;ABP=91.3725;RUN=1;RPP=9.52472;RPPR=3.44459;RPL=3.0;RPR=0.0;EPP=3.73412;EPPR=6.91895;DPRA=0.0;ODDS=1.78378;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=3;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=55.55;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.42065:52:20:704:3:69:-5.74751,-5.76916,-62.7147:3:8:37:.:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0218746
chr2	30243931	.	C	CTTT	8.42138	REJECT	NS=1;DP=52;DPB=83.1429;AC=1;AN=4;AF=0.5;RO=20;AO=9;PRO=16.25;PAO=16.25;QR=704;QA=153;PQR=563.917;PQA=563.917;SRF=6;SRR=14;SAF=1;SAR=8;SRP=9.95901;SAP=14.8328;AB=0.173077;ABP=51.2838;RUN=1;RPP=3.25157;RPPR=3.44459;RPL=5.0;RPR=4.0;EPP=3.25157;EPPR=6.91895;DPRA=0.0;ODDS=1.78378;GTI=0;TYPE=ins;CIGAR=1M3I20M;NUMALT=3;MEANALT=13.0;LEN=3;MQM=48.8889;MQMR=55.55;PAIRED=0.888889;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.831;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=56.68;MQRankSum=0.912;QD=5.41;ReadPosRankSum=-0.935;SOR=0.693;ClippingRankSum=-0.385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53.710325:53:20:704:9:153:-5.74751,0.0,-56.4994:17:35:45:29,25:524,0,683:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	30243931	.	CT	C	8.42138	REJECT	NS=1;DP=52;DPB=83.1429;AC=1;AN=3;AF=0.0;RO=20;AO=5;PRO=16.25;PAO=14.25;QR=704;QA=87;PQR=563.917;PQA=482.25;SRF=6;SRR=14;SAF=0;SAR=5;SRP=9.95901;SAP=13.8677;AB=0.0961538;ABP=76.6733;RUN=1;RPP=6.91895;RPPR=3.44459;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=6.91895;DPRA=0.0;ODDS=1.78378;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=52.0;MQMR=55.55;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.42065:52:20:704:5:87:-5.74751,-8.68783,-177.695:5:14:37:.:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0218746
chr2	31502382	.	G	A	5669.57	REJECT	NS=2;DP=232;DPB=262.0;AC=3;AN=4;AF=0.75;RO=62;AO=199;PRO=0.0;PAO=0.0;QR=2393;QA=7597;PQR=0.0;PQA=0.0;SRF=32;SRR=30;SAF=131;SAR=68;SRP=3.15039;SAP=46.3197;AB=0.689655;ABP=66.4323;RUN=1;RPP=97.3875;RPPR=38.8746;RPL=53.0;RPR=146.0;EPP=6.16385;EPPR=5.25182;DPRA=0.0;ODDS=37.8483;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979899;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.388;Dels=0.0;FS=6.202;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.309;QD=27.365;ReadPosRankSum=-0.056;SOR=1.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.434:59:0:0:59:2289:-206.205,-16.0113,0.0:59:100:59:0,59:2575,178,0:1:.:1:.:.:.:-0.000507812	0/1:129.501:202:62:2393:140:5308:-422.811,0.0,-160.574:139:69:201:62,139:5278,0,2093:.:1:1:.:.:.:-0.0218746
chr2	34505480	.	C	T	14375.55	REJECT	NS=2;DP=376;DPB=434.0;AC=4;AN=4;AF=1.0;RO=0;AO=434;PRO=0.0;PAO=0.0;QR=0;QA=16682;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=250;SAR=184;SRP=0.0;SAP=24.8051;AB=0.0;ABP=0.0;RUN=1;RPP=14.5381;RPPR=0.0;RPL=193.0;RPR=241.0;EPP=12.6969;EPPR=0.0;DPRA=0.0;ODDS=75.438;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995392;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.92;SOR=0.997	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.405:113:0:0:114:4336:-390.245,-30.8872,0.0:113:100:113:0,112:4460,336,0:1:.:1:.:.:.:-0.000507812	1/1:125.405:319:0:0:320:12346:-1110.44,-86.6793,0.0:319:100:319:0,319:13858,957,0:.:1:1:.:.:.:-0.0218746
chr2	36002916	.	C	A	550.44	REJECT	NS=2;DP=195;DPB=232.957;AC=2;AN=2;AF=0.0;RO=125;AO=6;PRO=42.0;PAO=0.0;QR=4588;QA=109;PQR=1510.17;PQA=0.0;SRF=25;SRR=100;SAF=0;SAR=6;SRP=100.727;SAP=16.0391;AB=0.0307692;ABP=375.936;RUN=1;RPP=3.0103;RPPR=13.8677;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=3.16665;DPRA=0.0;ODDS=0.155808;GTI=1;TYPE=snp;CIGAR=1X22M;NUMALT=3;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.68509:46:31:1114:3:42:-6.25948,-22.0057,-227.142:3:7:42:.:.:1:.:.:.:-0.000507812	./1:160.002:149:94:3474:3:67:-58.5178,-114.751,-782.311:3:2:138:.:.:1:.:.:.:-0.0218746
chr2	36002916	.	C	CA	550.44	REJECT	NS=2;DP=195;DPB=232.957;AC=2;AN=2;AF=0.0;RO=125;AO=14;PRO=42.0;PAO=22.0;QR=4588;QA=443;PQR=1510.17;PQA=747.167;SRF=25;SRR=100;SAF=1;SAR=13;SRP=100.727;SAP=25.3454;AB=0.0717949;ABP=313.575;RUN=1;RPP=3.63072;RPPR=13.8677;RPL=8.0;RPR=6.0;EPP=5.49198;EPPR=3.16665;DPRA=0.0;ODDS=0.155808;GTI=1;TYPE=ins;CIGAR=1M1I22M;NUMALT=3;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.68509:46:31:1114:4:127:-6.25948,-0.358745,-115.208:4:10:42:.:.:1:.:.:.:-0.000507812	./1:160.002:149:94:3474:10:316:-58.5178,-59.4464,-391.787:10:7:138:.:.:1:.:.:.:-0.0218746
chr2	36002916	.	CA	C	550.44	REJECT	NS=2;DP=195;DPB=232.957;AC=2;AN=4;AF=0.5;RO=125;AO=35;PRO=42.0;PAO=21.0;QR=4588;QA=1108;PQR=1510.17;PQA=741.667;SRF=25;SRR=100;SAF=6;SAR=29;SRP=100.727;SAP=35.8306;AB=0.179487;ABP=177.006;RUN=1;RPP=16.9698;RPPR=13.8677;RPL=25.0;RPR=10.0;EPP=6.05036;EPPR=3.16665;DPRA=0.0;ODDS=0.155808;GTI=1;TYPE=del;CIGAR=1M1D21M;NUMALT=3;MEANALT=8.0;LEN=1;MQM=60.2857;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.7;FS=4.661;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.274;QD=2.26;RPA=12,11;RU=A;ReadPosRankSum=-0.2;SOR=0.331;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2.68509:46:31:1114:4:127:-6.25948,0.0,-114.849:4:10:42:.:.:.:.:1:.:.:.:-0.000507812	0/1:129.501:181:94:3474:31:981:-58.5178,0.0,-362.323:35:22:157:137,40:520,0,2832:.:1:1:.:.:.:-0.0218746
chr2	39281730	.	G	C	7866.01	REJECT	NS=2;DP=208;DPB=243.0;AC=4;AN=4;AF=1.0;RO=0;AO=242;PRO=0.0;PAO=0.0;QR=0;QA=9381;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=166;SAR=76;SRP=0.0;SAP=75.6918;AB=0.0;ABP=0.0;RUN=1;RPP=111.584;RPPR=0.0;RPL=66.0;RPR=176.0;EPP=9.07607;EPPR=0.0;DPRA=0.0;ODDS=47.9984;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995868;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8103;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.285;SOR=1.949	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:68:0:0:70:2653:-238.91,-18.9704,0.0:68:100:68:0,66:2725,198,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:173:0:0:172:6728:-605.321,-46.6204,0.0:172:100:172:0,172:7549,518,0:.:1:1:.:.:.:-0.0218746
chr2	42012217	.	G	A	1257.4099999999999	REJECT	NS=2;DP=242;DPB=278.0;AC=2;AN=4;AF=0.5;RO=216;AO=61;PRO=0.0;PAO=0.0;QR=8211;QA=2351;PQR=0.0;PQA=0.0;SRF=69;SRR=147;SAF=21;SAR=40;SRP=64.1734;SAP=15.8611;AB=0.219424;ABP=193.1;RUN=1;RPP=32.9481;RPPR=46.8017;RPL=45.0;RPR=16.0;EPP=5.89373;EPPR=8.80089;DPRA=0.0;ODDS=61.6752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983607;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9155;Dels=0.0;FS=6.3735;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0215;QD=10.125;ReadPosRankSum=-0.04;SOR=0.8125;ClippingRankSum=0.412	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:32:1160:36:1397:-107.382,0.0,-86.0483:36:53:68:32,36:1276,0,1099:1:.:1:.:.:.:-0.000507812	0/1:129.501:208:184:7051:25:954:-29.2342,0.0,-577.68:25:12:208:182,25:478,0,7129:.:1:1:.:.:.:-0.0218746
chr2	47596853	.	C	CG	1476.32	REJECT	NS=1;DP=101;DPB=113.5;AC=1;AN=4;AF=0.5;RO=46;AO=54;PRO=5.0;PAO=2.0;QR=1730;QA=2014;PQR=172.0;PQA=70.0;SRF=19;SRR=27;SAF=26;SAR=28;SRP=6.03148;SAP=3.17115;AB=0.534653;ABP=4.06379;RUN=1;RPP=5.5839;RPPR=6.03148;RPL=23.0;RPR=31.0;EPP=8.80089;EPPR=7.73089;DPRA=0.0;ODDS=302.009;GTI=0;TYPE=ins;CIGAR=1M1I5M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978261;technology.ILLUMINA=1.0;END=47596853;HOMLEN=2;HOMSEQ=GG;SVLEN=1;SVTYPE=INS;BaseQRankSum=1.478;FS=3.653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.781;QD=14.98;ReadPosRankSum=1.211;SOR=0.415;ClippingRankSum=1.328	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:46:1730:54:2014:-153.373,0.0,-137.016:55:53:104:57,59:1640,0,1430:1:.:1:1:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	47601106	.	T	C	1952.845	REJECT	NS=2;DP=340;DPB=394.0;AC=2;AN=4;AF=0.5;RO=305;AO=89;PRO=0.0;PAO=0.0;QR=11697;QA=3424;PQR=0.0;PQA=0.0;SRF=145;SRR=160;SAF=41;SAR=48;SRP=4.61221;SAP=4.20583;AB=0.225888;ABP=260.148;RUN=1;RPP=3.22989;RPPR=9.85222;RPL=43.0;RPR=46.0;EPP=4.20583;EPPR=3.87177;DPRA=0.0;ODDS=73.1581;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=0.993443;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.02;Dels=0.0;FS=1.295;HaplotypeScore=3.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2575;QD=10.2;ReadPosRankSum=0.8125;SOR=0.6225;ClippingRankSum=-0.616	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:50:1933:57:2204:-169.364,0.0,-144.978:55:53:104:47,54:1978,0,1654:1:.:1:.:.:.:-0.000507812	0/1:129.501:287:255:9764:32:1220:-32.0092,0.0,-800.531:32:11:287:255,32:503,0,10050:.:1:1:.:.:.:-0.0218746
chr2	48010488	.	G	A	1279.74	REJECT	NS=1;DP=101;DPB=101.0;AC=1;AN=4;AF=0.5;RO=51;AO=50;PRO=0.0;PAO=0.0;QR=1968;QA=1799;PQR=0.0;PQA=0.0;SRF=20;SRR=31;SAF=24;SAR=26;SRP=8.16222;SAP=3.18402;AB=0.49505;ABP=3.0318;RUN=1;RPP=9.26414;RPPR=6.45911;RPL=31.0;RPR=19.0;EPP=14.1282;EPPR=4.07475;DPRA=0.0;ODDS=294.672;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.249;FS=3.748;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.209;QD=16.82;ReadPosRankSum=0.606;SOR=0.409;ClippingRankSum=0.858	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.8785:100:51:1968:50:1799:-134.568,0.0,-150.178:49:49:100:51,48:1693,0,1788:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	48018293	.	T	TTG	118.352	REJECT	NS=2;DP=143;DPB=171.75;AC=2;AN=2;AF=0.0;RO=117;AO=4;PRO=22.8333;PAO=22.8333;QR=4387;QA=146;PQR=822.0;PQA=822.0;SRF=31;SRR=86;SAF=0;SAR=4;SRP=59.1531;SAP=11.6962;AB=0.0789474;ABP=61.5258;RUN=1;RPP=11.6962;RPPR=143.488;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=28.4184;DPRA=0.0;ODDS=8.14022;GTI=0;TYPE=ins;CIGAR=1M2I23M;NUMALT=2;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:118.277:38:25:931:3:107:-16.1955,-14.1498,-90.493:3:8:36:.:.:1:.:.:.:-0.000507812	./1:35.3538:105:92:3456:1:39:0.0,-21.696,-307.506:1:1:102:.:.:1:.:.:.:-0.0218746
chr2	48018293	.	TTG	T	118.352	REJECT	NS=2;DP=143;DPB=171.75;AC=2;AN=3;AF=0.25;RO=117;AO=17;PRO=22.8333;PAO=21.3333;QR=4387;QA=593;PQR=822.0;PQA=771.0;SRF=31;SRR=86;SAF=3;SAR=14;SRP=59.1531;SAP=18.4661;AB=0.210526;ABP=30.668;RUN=1;RPP=13.3567;RPPR=143.488;RPL=13.0;RPR=4.0;EPP=4.1599;EPPR=28.4184;DPRA=0.0;ODDS=8.14022;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=2;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.819;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.903;QD=2.95;ReadPosRankSum=-3.634;SOR=0.511;ClippingRankSum=1.113	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:108.6385:37:25:931:8:279:-16.1955,0.0,-74.9977:8:22:36:29,8:170,0,821:1:.:1:.:.:.:-0.000507812	./1:35.3538:105:92:3456:9:314:0.0,-0.74002,-301.131:9:9:102:.:.:.:.:1:.:.:.:-0.0218746
chr2	48030692	.	T	A	5315.620000000001	REJECT	NS=2;DP=316;DPB=369.0;AC=2;AN=4;AF=0.5;RO=177;AO=192;PRO=0.0;PAO=0.0;QR=6800;QA=7195;PQR=0.0;PQA=0.0;SRF=92;SRR=85;SAF=94;SAR=98;SRP=3.61144;SAP=3.19126;AB=0.520325;ABP=4.33437;RUN=1;RPP=7.5342;RPPR=3.61144;RPL=106.0;RPR=86.0;EPP=7.5342;EPPR=7.43912;DPRA=0.0;ODDS=301.785;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994792;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.44;Dels=0.0;FS=1.107;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.666;QD=17.485;ReadPosRankSum=0.2435;SOR=0.6515;ClippingRankSum=0.309	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:56:2112:49:1778:-131.616,0.0,-161.667:48:46:103:55,47:1606,0,1958:1:.:1:.:.:.:-0.000507812	0/1:129.501:264:121:4688:143:5417:-415.772,0.0,-350.19:143:54:264:121,143:5255,0,4462:.:1:1:.:.:.:-0.0218746
chr2	48030838	.	A	T	1077.36	REJECT	NS=2;DP=206;DPB=232.0;AC=2;AN=4;AF=0.5;RO=181;AO=51;PRO=0.0;PAO=0.0;QR=7065;QA=2003;PQR=0.0;PQA=0.0;SRF=49;SRR=132;SAF=14;SAR=37;SRP=85.6582;SAP=25.534;AB=0.219828;ABP=161.191;RUN=1;RPP=25.534;RPPR=44.7722;RPL=37.0;RPR=14.0;EPP=3.05288;EPPR=4.46195;DPRA=0.0;ODDS=46.0707;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0055;Dels=0.0;FS=0.6015;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.081;QD=12.035;ReadPosRankSum=-0.126;SOR=0.6125;ClippingRankSum=0.877	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:21:814:31:1216:-95.4509,0.0,-59.2342:31:60:52:21,31:1189,0,714:1:.:1:.:.:.:-0.000507812	0/1:129.501:180:160:6251:20:787:-22.0266,0.0,-513.591:20:11:180:160,20:344,0,6455:.:1:1:.:.:.:-0.0218746
chr2	48032874	.	ACTAT	A	4497.41	REJECT	NS=2;DP=241;DPB=216.5;AC=2;AN=4;AF=0.5;RO=67;AO=178;PRO=59.5;PAO=20.5;QR=2542;QA=6137;PQR=2195.5;PQA=742.5;SRF=18;SRR=49;SAF=49;SAR=129;SRP=34.1563;SAP=81.0857;AB=0.723577;ABP=109.818;RUN=1;RPP=110.803;RPPR=30.2671;RPL=136.0;RPR=42.0;EPP=6.13332;EPPR=3.04271;DPRA=0.0;ODDS=179.503;GTI=0;TYPE=del;CIGAR=1M4D5M;NUMALT=1;MEANALT=1.5;LEN=4;MQM=60.2809;MQMR=60.0;PAIRED=0.994382;PAIREDR=0.985075;technology.ILLUMINA=1.0;MQ0=0;END=48032878;HOMLEN=6;HOMSEQ=CTATCT;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=0.022;FS=1.9035;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-1.0575;QD=22.99;RPA=2,1;RU=CTAT;ReadPosRankSum=-0.597;SOR=0.7775;STR;ClippingRankSum=-1.099	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:70:34:1288:32:1138:-82.1349,0.0,-126.64:35:53:66:28,37:1536,0,1912:1:.:1:1:.:.:-0.000507812	0/1:129.501:208:33:1254:146:4999:-393.211,0.0,-156.129:146:82:179:29,146:9186,0,1714:.:1:1:1:.:.:-0.0218746
chr2	51288460	.	C	G	1390.26	REJECT	NS=1;DP=100;DPB=100.0;AC=1;AN=4;AF=0.5;RO=49;AO=51;PRO=0.0;PAO=0.0;QR=1877;QA=1921;PQR=0.0;PQA=0.0;SRF=32;SRR=17;SAF=34;SAR=17;SRP=12.9813;SAP=15.3153;AB=0.51;ABP=3.09716;RUN=1;RPP=8.16222;RPPR=3.40914;RPL=31.0;RPR=20.0;EPP=5.09662;EPPR=12.9813;DPRA=0.0;ODDS=310.834;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=61.1765;MQMR=60.0;PAIRED=0.980392;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.814;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=-0.537;QD=17.53;ReadPosRankSum=-0.906;SOR=0.851;ClippingRankSum=-0.259	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.6235:99:49:1877:51:1921:-145.832,0.0,-141.853:50:51:99:48,50:1764,0,1771:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	51288511	.	TAC	T	1007.84	REJECT	NS=1;DP=28;DPB=99.7778;AC=1;AN=3;AF=0.0;RO=12;AO=6;PRO=26.9;PAO=22.9;QR=437;QA=185;PQR=965.1;PQA=819.1;SRF=8;SRR=4;SAF=3;SAR=3;SRP=5.9056;SAP=3.0103;AB=0.214286;ABP=22.8638;RUN=1;RPP=3.0103;RPPR=9.52472;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=3.73412;DPRA=0.0;ODDS=73.0469;GTI=0;TYPE=del;CIGAR=1M2D42M;NUMALT=4;MEANALT=8.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.581;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=0.387;QD=0.51;ReadPosRankSum=1.03;SOR=0.659;ClippingRankSum=-0.363	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:107.873:40:12:437:6:185:-104.59,-93.9017,-140.305:7:21:38:43,9:81,0,1425:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	51288523	.	C	CACACACACACACAT	1007.84	REJECT	NS=1;DP=28;DPB=99.7778;AC=1;AN=3;AF=0.0;RO=12;AO=2;PRO=26.9;PAO=22.9;QR=437;QA=72;PQR=965.1;PQA=742.1;SRF=8;SRR=4;SAF=1;SAR=1;SRP=5.9056;SAP=3.0103;AB=0.0714286;ABP=47.6806;RUN=1;RPP=7.35324;RPPR=9.52472;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=3.73412;DPRA=0.0;ODDS=73.0469;GTI=0;TYPE=ins;CIGAR=13M14I32M;NUMALT=4;MEANALT=8.0;LEN=14;MQM=44.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.746:28:12:437:2:72:-104.59,-50.8353,-197.757:2:8:24:.:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0218746
chr2	51288523	.	C	CACACACACACACACAT	1007.84	REJECT	NS=1;DP=28;DPB=99.7778;AC=1;AN=4;AF=0.5;RO=12;AO=2;PRO=26.9;PAO=26.9;QR=437;QA=67;PQR=965.1;PQA=852.1;SRF=8;SRR=4;SAF=2;SAR=0;SRP=5.9056;SAP=7.35324;AB=0.0714286;ABP=47.6806;RUN=1;RPP=7.35324;RPPR=9.52472;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=3.73412;DPRA=0.0;ODDS=73.0469;GTI=0;TYPE=ins;CIGAR=13M16I32M;NUMALT=4;MEANALT=8.0;LEN=16;MQM=40.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.375;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-2.013;QD=5.33;ReadPosRankSum=1.922;SOR=0.551;ClippingRankSum=-1.467	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.873:44:12:437:2:67:-104.59,0.0,-140.268:7:14:42:49,12:496,0,1700:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	51288525	.	C	CACACACACACACAT	1007.84	REJECT	NS=1;DP=28;DPB=99.7778;AC=1;AN=3;AF=0.0;RO=12;AO=2;PRO=26.9;PAO=25.4;QR=437;QA=31;PQR=965.1;PQA=802.6;SRF=8;SRR=4;SAF=1;SAR=1;SRP=5.9056;SAP=3.0103;AB=0.0714286;ABP=47.6806;RUN=1;RPP=7.35324;RPPR=9.52472;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=3.73412;DPRA=0.0;ODDS=73.0469;GTI=0;TYPE=ins;CIGAR=15M14I30M;NUMALT=4;MEANALT=8.0;LEN=14;MQM=45.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.746:28:12:437:2:31:-104.59,-50.1884,-243.998:2:8:24:.:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0218746
chr2	54048358	.	G	A	3149.58	PASS	SOMATIC;NS=2;DP=441;DPB=441.0;AC=1;AN=3;AF=0.25;RO=320;AO=121;PRO=0.0;PAO=0.0;QR=12136;QA=4540;PQR=0.0;PQA=0.0;SRF=164;SRR=156;SAF=49;SAR=72;SRP=3.44459;SAP=12.5038;AB=0.38535;ABP=38.8603;RUN=1;RPP=18.1029;RPPR=22.7978;RPL=46.0;RPR=75.0;EPP=9.48883;EPPR=14.9805;DPRA=2.47244;ODDS=80.1322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991736;PAIREDR=0.990625;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.926;Dels=0.0;FS=8.841;HaplotypeScore=5.9276;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.301;QD=13.08;ReadPosRankSum=-1.36;SOR=1.128	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.998:124:127:4766:0:0:0.0,-34.375,-428.877:0:0:124:122,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:121.499:314:193:7370:121:4540:-323.357,0.0,-577.888:121:39:314:187,116:37.0:0.381:2:4135,0,7273:.:1:1:.:.:1:-0.0218746
chr2	54048424	.	C	CT	323.465	REJECT	NS=2;DP=258;DPB=307.188;AC=2;AN=2;AF=0.0;RO=193;AO=24;PRO=40.3333;PAO=26.3333;QR=7190;QA=807;PQR=1425.83;PQA=958.833;SRF=71;SRR=122;SAF=7;SAR=17;SRP=32.2745;SAP=12.0581;AB=0.0930233;ABP=374.181;RUN=1;RPP=16.0391;RPPR=73.2287;RPL=18.0;RPR=6.0;EPP=3.37221;EPPR=27.8641;DPRA=0.0;ODDS=17.4184;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=59.9948;PAIRED=1.0;PAIREDR=0.989637;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:75.572:67:52:1958:5:192:-10.405,-7.20145,-184.338:5:8:65:.:.:1:.:.:.:-0.000507812	./1:134.522:191:141:5232:19:615:-28.9645,-19.145,-471.153:19:10:182:.:.:1:.:.:.:-0.0218746
chr2	54048424	.	CT	C	323.465	REJECT	NS=2;DP=258;DPB=307.188;AC=2;AN=4;AF=0.5;RO=193;AO=30;PRO=40.3333;PAO=25.3333;QR=7190;QA=1110;PQR=1425.83;PQA=920.333;SRF=71;SRR=122;SAF=10;SAR=20;SRP=32.2745;SAP=10.2485;AB=0.116279;ABP=332.973;RUN=1;RPP=13.4334;RPPR=73.2287;RPL=21.0;RPR=9.0;EPP=7.64277;EPPR=27.8641;DPRA=0.0;ODDS=17.4184;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=59.9948;PAIRED=1.0;PAIREDR=0.989637;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:75.572:67:52:1958:8:282:-10.405,0.0,-182.625:8:12:65:.:.:1:.:.:.:-0.000507812	0/1:134.522:191:141:5232:22:828:-28.9645,0.0,-468.868:22:12:182:.:.:1:.:.:.:-0.0218746
chr2	55516588	.	G	C	12740.05	REJECT	NS=2;DP=329;DPB=373.0;AC=4;AN=4;AF=1.0;RO=0;AO=373;PRO=0.0;PAO=0.0;QR=0;QA=14550;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=143;SAR=230;SRP=0.0;SAP=47.0743;AB=0.0;ABP=0.0;RUN=1;RPP=34.0338;RPPR=0.0;RPL=223.0;RPR=150.0;EPP=45.0717;EPPR=0.0;DPRA=0.0;ODDS=58.5812;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991957;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.205;SOR=1.3705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.649:84:0:0:87:3336:-300.304,-23.5664,0.0:84:100:84:0,81:3317,243,0:1:.:1:.:.:.:-0.000507812	1/1:122.649:286:0:0:286:11214:-1008.66,-77.5004,0.0:286:100:286:0,286:12578,861,0:.:1:1:.:.:.:-0.0218746
chr2	57011171	.	T	C	9772.14	REJECT	NS=2;DP=345;DPB=396.0;AC=2;AN=4;AF=0.5;RO=80;AO=316;PRO=0.0;PAO=0.0;QR=2977;QA=12184;PQR=0.0;PQA=0.0;SRF=45;SRR=35;SAF=140;SAR=176;SRP=5.72464;SAP=11.9161;AB=0.79798;ABP=308.42;RUN=1;RPP=27.7486;RPPR=3.98746;RPL=128.0;RPR=188.0;EPP=21.5915;EPPR=9.95901;DPRA=0.0;ODDS=62.0469;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0245;Dels=0.0;FS=7.312;HaplotypeScore=4.8903;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1845;QD=26.86;ReadPosRankSum=0.9215;SOR=0.73;ClippingRankSum=1.321	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8425:100:49:1791:52:1996:-152.327,0.0,-133.844:52:52:100:47,52:1894,0,1432:1:.:1:.:.:.:-0.000507812	0/1:117.8425:294:31:1186:264:10188:-836.463,0.0,-26.7799:263:89:294:31,263:10466,0,458:.:1:1:.:.:.:-0.0218746
chr2	58388696	.	A	G	9492.67	REJECT	NS=2;DP=378;DPB=438.0;AC=2;AN=4;AF=0.5;RO=115;AO=323;PRO=0.0;PAO=0.0;QR=4359;QA=12027;PQR=0.0;PQA=0.0;SRF=71;SRR=44;SAF=192;SAR=131;SRP=16.7755;SAP=28.0259;AB=0.737443;ABP=217.5;RUN=1;RPP=42.8699;RPPR=3.93554;RPL=123.0;RPR=200.0;EPP=14.3114;EPPR=6.20142;DPRA=0.0;ODDS=207.8;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990712;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0705;Dels=0.0;FS=4.4765;HaplotypeScore=6.7989;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6245;QD=23.7;ReadPosRankSum=1.852;SOR=0.6155;ClippingRankSum=0.67	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.8265:116:63:2389:56:2088:-155.677,0.0,-182.772:54:47:116:60,53:1882,0,2027:1:.:1:.:.:.:-0.000507812	0/1:124.8265:318:52:1970:267:9939:-807.6,0.0,-90.8971:266:84:318:52,266:9974,0,1267:.:1:1:.:.:.:-0.0218746
chr2	58390218	.	T	TA	119.568	REJECT	NS=2;DP=224;DPB=305.458;AC=2;AN=2;AF=0.0;RO=174;AO=16;PRO=85.6667;PAO=35.6667;QR=6553;QA=610;PQR=3151.0;PQA=1280.0;SRF=52;SRR=122;SAF=6;SAR=10;SRP=64.161;SAP=5.18177;AB=0.0714286;ABP=360.373;RUN=1;RPP=5.18177;RPPR=34.2096;RPL=10.0;RPR=6.0;EPP=11.6962;EPPR=21.031;DPRA=0.0;ODDS=12.6889;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=59.8506;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.9326:48:36:1336:3:114:-10.8366,-9.99245,-168.688:3:7:44:.:.:1:.:.:.:-0.000507812	./1:55.1062:176:138:5217:13:496:-9.69019,-10.2557,-555.058:13:8:166:.:.:1:.:.:.:-0.0218746
chr2	58390218	.	TA	T	119.568	REJECT	NS=2;DP=224;DPB=305.458;AC=2;AN=4;AF=0.5;RO=174;AO=20;PRO=85.6667;PAO=37.6667;QR=6553;QA=743;PQR=3151.0;PQA=1367.0;SRF=52;SRR=122;SAF=1;SAR=19;SRP=64.161;SAP=38.1882;AB=0.0892857;ABP=331.213;RUN=1;RPP=3.44459;RPPR=34.2096;RPL=11.0;RPR=9.0;EPP=3.0103;EPPR=21.031;DPRA=0.0;ODDS=12.6889;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=61.5;MQMR=59.8506;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:88.9326:48:36:1336:5:189:-10.8366,0.0,-157.621:5:11:44:.:.:1:.:.:.:-0.000507812	0/1:55.1062:176:138:5217:15:554:-9.69019,0.0,-556.2:15:9:166:.:.:1:.:.:.:-0.0218746
chr2	58390538	.	T	C	1754.75	PASS	SOMATIC;NS=2;DP=285;DPB=285.0;AC=1;AN=3;AF=0.25;RO=214;AO=70;PRO=0.0;PAO=0.0;QR=8218;QA=2716;PQR=0.0;PQA=0.0;SRF=158;SRR=56;SAF=55;SAR=15;SRP=108.58;SAP=52.644;AB=0.330189;ABP=56.1089;RUN=1;RPP=18.0245;RPPR=58.5756;RPL=24.0;RPR=46.0;EPP=3.50664;EPPR=4.02501;DPRA=2.90411;ODDS=46.5536;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985714;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.676;Dels=0.0;FS=1.364;HaplotypeScore=5.8657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.688;QD=11.39;ReadPosRankSum=-0.105;SOR=0.838	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:72:73:2778:0:0:0.0,-19.792,-250.162:0:0:72:72,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:210:141:5440:70:2716:-187.162,0.0,-432.213:70:33:210:135,66:38.0:0.325:2:2421,0,5419:.:1:1:.:.:1:-0.0218746
chr2	58390547	.	G	A	2119.38	PASS	SOMATIC;NS=2;DP=345;DPB=345.0;AC=1;AN=3;AF=0.25;RO=261;AO=83;PRO=0.0;PAO=0.0;QR=9826;QA=3227;PQR=0.0;PQA=0.0;SRF=187;SRR=74;SAF=60;SAR=23;SRP=109.246;SAP=38.8265;AB=0.330677;ABP=65.5158;RUN=1;RPP=16.8502;RPPR=42.621;RPL=30.0;RPR=53.0;EPP=8.89682;EPPR=11.0056;DPRA=2.67021;ODDS=59.6312;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.988506;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.713;Dels=0.0;FS=0.553;HaplotypeScore=6.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.713;QD=11.55;ReadPosRankSum=-0.34;SOR=0.602	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:92:94:3534:0:0:0.0,-25.4715,-318.138:0:0:92:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:249:167:6292:83:3227:-222.623,0.0,-498.275:83:33:248:158,77:38.0:0.321:2:2905,0,6199:.:1:1:.:.:1:-0.0218746
chr2	58453843	.	GA	G	55.5239	REJECT	NS=1;DP=82;DPB=91.8824;AC=1;AN=4;AF=0.5;RO=64;AO=9;PRO=11.5;PAO=9.5;QR=2430;QA=332;PQR=367.5;PQA=301.5;SRF=44;SRR=20;SAF=6;SAR=3;SRP=22.5536;SAP=5.18177;AB=0.109756;ABP=111.478;RUN=1;RPP=3.25157;RPPR=25.9465;RPL=4.0;RPR=5.0;EPP=3.25157;EPPR=3.14602;DPRA=0.0;ODDS=12.7848;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=61.1111;MQMR=60.0;PAIRED=1.0;PAIREDR=0.96875;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55.5239:82:64:2430:9:332:-9.55517,0.0,-204.393:9:12:73:.:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0218746
chr2	61108926	.	C	G	1021.4	REJECT	NS=1;DP=71;DPB=71.0;AC=1;AN=4;AF=0.5;RO=34;AO=37;PRO=0.0;PAO=0.0;QR=1307;QA=1427;PQR=0.0;PQA=0.0;SRF=29;SRR=5;SAF=27;SAR=10;SRP=39.7976;SAP=19.9713;AB=0.521127;ABP=3.28556;RUN=1;RPP=5.88603;RPPR=19.3602;RPL=15.0;RPR=22.0;EPP=7.76406;EPPR=5.30951;DPRA=0.0;ODDS=202.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.357;FS=6.168;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.621;QD=17.73;ReadPosRankSum=0.395;SOR=0.2;ClippingRankSum=0.47	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:69:34:1307:37:1427:-109.255,0.0,-98.4427:35:51:69:33,34:1234,0,1144:1:.:1:.:.:.:-0.000507812	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0218746
chr2	61726050	.	T	TA	341.474	REJECT	NS=2;DP=167;DPB=210.769;AC=2;AN=3;AF=0.25;RO=111;AO=17;PRO=41.1667;PAO=28.1667;QR=4138;QA=548;PQR=1489.67;PQA=1009.67;SRF=12;SRR=99;SAF=3;SAR=14;SRP=151.081;SAP=18.4661;AB=0.101796;ABP=233.017;RUN=1;RPP=4.1599;RPPR=11.6375;RPL=10.0;RPR=7.0;EPP=3.13803;EPPR=4.59489;DPRA=0.0;ODDS=24.5733;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981982;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.42:50:31:1140:3:89:-13.8347,-13.7809,-123.237:3:7:42:.:.:1:.:.:.:-0.000507812	0/1:139.376:117:80:2998:14:459:-28.4195,0.0,-285.464:14:14:101:.:.:1:.:.:.:-0.0218746
chr2	61726050	.	TA	T	341.474	REJECT	NS=2;DP=167;DPB=210.769;AC=2;AN=3;AF=0.25;RO=111;AO=15;PRO=41.1667;PAO=18.6667;QR=4138;QA=527;PQR=1489.67;PQA=670.667;SRF=12;SRR=99;SAF=1;SAR=14;SRP=151.081;SAP=27.4756;AB=0.0898204;ABP=247.06;RUN=1;RPP=4.31318;RPPR=11.6375;RPL=9.0;RPR=6.0;EPP=3.15506;EPPR=4.59489;DPRA=0.0;ODDS=24.5733;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981982;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.261;FS=2.447;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.768;QD=0.73;ReadPosRankSum=-0.072;SOR=1.259;ClippingRankSum=-0.594	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:91.21:50:31:1140:8:268:-13.8347,0.0,-114.046:8:17:46:43,8:76,0,962:1:.:1:.:.:.:-0.000507812	./1:139.376:117:80:2998:7:259:-28.4195,-35.7416,-363.193:7:7:101:.:.:.:.:1:.:.:.:-0.0218746
chr2	61749716	.	C	T	6018.95	REJECT	NS=2;DP=236;DPB=272.0;AC=2;AN=4;AF=0.5;RO=70;AO=202;PRO=0.0;PAO=0.0;QR=2719;QA=7737;PQR=0.0;PQA=0.0;SRF=45;SRR=25;SAF=138;SAR=64;SRP=15.4187;SAP=61.8766;AB=0.742647;ABP=142.112;RUN=1;RPP=82.5163;RPPR=18.0245;RPL=58.0;RPR=144.0;EPP=6.49326;EPPR=7.47733;DPRA=0.0;ODDS=167.182;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.063;Dels=0.0;FS=2.4395;HaplotypeScore=8.6812;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6495;QD=25.715;ReadPosRankSum=0.884;SOR=1.0105;ClippingRankSum=0.996	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.209:70:33:1277:38:1457:-111.952,0.0,-95.7533:38:54:70:32,38:1380,0,1150:1:.:1:.:.:.:-0.000507812	0/1:119.209:200:37:1442:164:6280:-510.507,0.0,-75.2873:163:82:200:37,163:6452,0,1020:.:1:1:.:.:.:-0.0218746
chr2	61760893	.	G	C	1628.0	REJECT	NS=2;DP=332;DPB=382.0;AC=2;AN=4;AF=0.5;RO=299;AO=83;PRO=0.0;PAO=0.0;QR=11027;QA=3183;PQR=0.0;PQA=0.0;SRF=210;SRR=89;SAF=60;SAR=23;SRP=109.34;SAP=38.8265;AB=0.217277;ABP=268.226;RUN=1;RPP=14.5479;RPPR=31.835;RPL=31.0;RPR=52.0;EPP=5.12945;EPPR=5.63204;DPRA=0.0;ODDS=91.523;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.996656;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.54;Dels=0.0;FS=2.9225;HaplotypeScore=7.7285;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.083;QD=9.28;ReadPosRankSum=1.0035;SOR=0.8865;ClippingRankSum=-0.419	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:50:1799:49:1851:-139.822,0.0,-135.132:47:49:96:47,46:1558,0,1586:1:.:1:.:.:.:-0.000507812	0/1:129.501:283:249:9228:34:1332:-43.3035,0.0,-753.423:34:12:283:249,34:675,0,9390:.:1:1:.:.:.:-0.0218746
chr2	64518912	.	C	A	2191.74	PASS	SOMATIC;NS=2;DP=292;DPB=292.0;AC=1;AN=3;AF=0.25;RO=210;AO=82;PRO=0.0;PAO=0.0;QR=7993;QA=3182;PQR=0.0;PQA=0.0;SRF=131;SRR=79;SAF=51;SAR=31;SRP=30.9706;SAP=13.6028;AB=0.381395;ABP=29.2801;RUN=1;RPP=30.1272;RPPR=137.393;RPL=25.0;RPR=57.0;EPP=3.11623;EPPR=7.14644;DPRA=2.79221;ODDS=49.0439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.97619;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.13;Dels=0.0;FS=1.797;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.194;QD=13.68;ReadPosRankSum=1.252;SOR=0.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:75:77:2940:0:0:0.0,-20.8735,-264.728:0:0:75:73,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:129.501:212:133:5053:82:3182:-228.035,0.0,-396.323:82:38:212:129,79:38.0:0.373:2:2929,0,4860:.:1:1:.:.:1:-0.0218746
chr2	67241174	.	G	A	8023.7	REJECT	NS=2;DP=334;DPB=382.0;AC=3;AN=4;AF=0.75;RO=104;AO=278;PRO=0.0;PAO=0.0;QR=4063;QA=10868;PQR=0.0;PQA=0.0;SRF=38;SRR=66;SAF=129;SAR=149;SRP=19.3799;SAP=6.13472;AB=0.637631;ABP=50.2304;RUN=1;RPP=3.79141;RPPR=8.35546;RPL=144.0;RPR=134.0;EPP=31.1301;EPPR=8.35546;DPRA=0.0;ODDS=60.28;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996403;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.457;Dels=0.0;FS=3.8275;HaplotypeScore=3.9984;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.121;QD=26.38;ReadPosRankSum=-1.291;SOR=0.6015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3697:-332.786,-25.7533,0.0:94:100:94:0,93:3775,279,0:1:.:1:.:.:.:-0.000507812	0/1:129.501:287:104:4063:183:7171:-567.227,0.0,-287.689:183:64:287:104,183:7166,0,3680:.:1:1:.:.:.:-0.0218746
chr2	70515067	.	G	GTT	5158.03	REJECT	NS=2;DP=224;DPB=374.0;AC=3;AN=4;AF=0.75;RO=68;AO=178;PRO=9.0;PAO=9.0;QR=2585;QA=6518;PQR=337.5;PQA=337.5;SRF=15;SRR=53;SAF=42;SAR=136;SRP=49.1222;SAP=110.803;AB=0.632979;ABP=31.8863;RUN=1;RPP=35.9972;RPPR=11.1853;RPL=115.0;RPR=63.0;EPP=3.79105;EPPR=3.13803;DPRA=0.0;ODDS=37.8171;GTI=0;TYPE=ins;CIGAR=1M2I2M;NUMALT=1;MEANALT=2.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=70515067;HOMLEN=0;SVLEN=2;SVTYPE=INS;BaseQRankSum=-0.644;FS=3.048;MLEAC=1;MLEAF=0.75;MQ=60.025;MQRankSum=1.704;QD=32.265;ReadPosRankSum=-1.537;SOR=1.625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.0165:62:0:0:59:2222:-200.147,-15.9978,0.0:59:100:64:12,56:2851,192,0:1:.:1:1:.:.:-0.000507812	0/1:129.501:194:68:2585:119:4296:-335.885,0.0,-181.97:119:64:198:82,118:6592,0,3174:.:1:1:1:.:.:-0.0218746
chr2	76508288	.	T	C	11074.9	REJECT	NS=2;DP=296;DPB=340.0;AC=4;AN=4;AF=1.0;RO=0;AO=340;PRO=0.0;PAO=0.0;QR=0;QA=13037;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=257;SAR=83;SRP=0.0;SAP=196.374;AB=0.0;ABP=0.0;RUN=1;RPP=15.3749;RPPR=0.0;RPL=148.0;RPR=192.0;EPP=10.3933;EPPR=0.0;DPRA=0.0;ODDS=58.6467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9676;MQMR=0.0;PAIRED=0.994118;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.0;MQ=59.98;QD=25.955;SOR=2.3815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.342:87:0:0:87:3386:-304.833,-23.5949,0.0:87:100:87:0,87:3684,262,0:1:.:1:.:.:.:-0.000507812	1/1:129.342:252:0:0:253:9651:-868.053,-68.4765,0.0:252:100:252:0,252:10712,740,0:.:1:1:.:.:.:-0.0218746
chr2	78017912	.	C	A	3410.81	PASS	SOMATIC;NS=2;DP=415;DPB=415.0;AC=1;AN=3;AF=0.25;RO=288;AO=127;PRO=0.0;PAO=0.0;QR=11057;QA=4867;PQR=0.0;PQA=0.0;SRF=164;SRR=124;SAF=77;SAR=50;SRP=15.074;SAP=15.4749;AB=0.39441;ABP=34.1932;RUN=1;RPP=29.0167;RPPR=58.7749;RPL=44.0;RPR=83.0;EPP=5.8999;EPPR=21.8599;DPRA=3.46237;ODDS=59.052;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993056;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.919;Dels=0.0;FS=1.941;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.554;QD=13.82;ReadPosRankSum=1.684;SOR=0.84	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.732:90:93:3622:0:0:0.0,-25.22,-326.049:0:0:90:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.000507812	0/1:118.866:321:195:7435:127:4867:-350.563,0.0,-581.533:127:40:321:184,122:38.0:0.403:2:4465,0,7316:.:1:1:.:.:1:-0.0218746
chr2	79516586	.	T	A	12167.0	REJECT	NS=2;DP=327;DPB=382.0;AC=4;AN=4;AF=1.0;RO=0;AO=382;PRO=0.0;PAO=0.0;QR=0;QA=14491;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=164;SAR=218;SRP=0.0;SAP=19.5863;AB=0.0;ABP=0.0;RUN=1;RPP=84.8669;RPPR=0.0;RPL=251.0;RPR=131.0;EPP=84.8669;EPPR=0.0;DPRA=0.0;ODDS=71.0621;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9476;MQMR=0.0;PAIRED=0.994764;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8464;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.155;SOR=1.0125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:107:4099:-368.925,-28.9868,0.0:106:100:106:0,106:4409,318,0:1:.:1:.:.:.:-0.000507812	1/1:129.501:274:0:0:275:10392:-934.729,-74.4212,0.0:274:100:274:0,273:11550,807,0:.:1:1:.:.:.:-0.0218746
chr2	100516102	.	G	A	2663.7799999999997	REJECT	NS=2;DP=378;DPB=438.0;AC=2;AN=4;AF=0.5;RO=315;AO=123;PRO=0.0;PAO=0.0;QR=12088;QA=4771;PQR=0.0;PQA=0.0;SRF=144;SRR=171;SAF=50;SAR=73;SRP=8.03571;SAP=12.3494;AB=0.280822;ABP=185.771;RUN=1;RPP=19.976;RPPR=5.49888;RPL=77.0;RPR=46.0;EPP=10.7958;EPPR=25.4075;DPRA=0.0;ODDS=259.82;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996825;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.081;Dels=0.0;FS=1.7035;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.533;QD=12.13;ReadPosRankSum=-1.548;SOR=0.8695;ClippingRankSum=-1.131	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:119:53:2070:66:2542:-196.516,0.0,-154.031:66:55:119:53,66:2341,0,1731:1:.:1:.:.:.:-0.00174608	0/1:129.501:318:262:10018:57:2229:-114.104,0.0,-814.653:57:18:318:261,57:1562,0,10159:.:1:1:.:.:.:-0.0116954
chr2	100516134	.	T	C	7911.6	REJECT	NS=2;DP=303;DPB=346.0;AC=2;AN=4;AF=0.5;RO=82;AO=264;PRO=0.0;PAO=0.0;QR=3119;QA=10042;PQR=0.0;PQA=0.0;SRF=21;SRR=61;SAF=93;SAR=171;SRP=45.3805;SAP=53.0529;AB=0.763006;ABP=210.894;RUN=1;RPP=69.635;RPPR=11.5903;RPL=177.0;RPR=87.0;EPP=7.74806;EPPR=3.434;DPRA=0.0;ODDS=154.324;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996212;PAIREDR=0.987805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.266;Dels=0.0;FS=3.9975;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1675;QD=25.155;ReadPosRankSum=-0.2445;SOR=0.3655;ClippingRankSum=0.478	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:42:1553:43:1648:-125.34,0.0,-116.786:42:51:84:41,42:1485,0,1442:1:.:1:.:.:.:-0.00174608	0/1:129.501:260:40:1566:221:8394:-684.352,0.0,-70.2135:220:85:260:40,220:8547,0,992:.:1:1:.:.:.:-0.0116954
chr2	102010609	.	A	G	11337.95	REJECT	NS=2;DP=302;DPB=354.0;AC=4;AN=4;AF=1.0;RO=0;AO=354;PRO=0.0;PAO=0.0;QR=0;QA=13500;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=157;SRP=0.0;SAP=12.8249;AB=0.0;ABP=0.0;RUN=1;RPP=15.9901;RPPR=0.0;RPL=154.0;RPR=200.0;EPP=3.40288;EPPR=0.0;DPRA=0.0;ODDS=69.1832;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99435;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.15;SOR=0.9775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:104:3971:-357.41,-28.1708,0.0:103:100:103:0,103:4308,309,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:250:0:0:250:9529:-857.137,-67.6815,0.0:250:100:250:0,250:10623,737,0:.:1:1:.:.:.:-0.0116954
chr2	112641666	.	T	C	2513.23	PASS	SOMATIC;NS=2;DP=352;DPB=352.0;AC=1;AN=3;AF=0.25;RO=255;AO=96;PRO=0.0;PAO=0.0;QR=9449;QA=3703;PQR=0.0;PQA=0.0;SRF=164;SRR=91;SAF=67;SAR=29;SRP=48.3898;SAP=35.6729;AB=0.366795;ABP=42.9268;RUN=1;RPP=16.0391;RPPR=89.8777;RPL=36.0;RPR=60.0;EPP=10.339;EPPR=12.2838;DPRA=0.0;ODDS=54.7931;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992157;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.715;Dels=0.0;FS=4.643;HaplotypeScore=3.9154;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=3.192;QD=12.96;ReadPosRankSum=-0.836;SOR=1.02	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.064:91:91:3389:1:14:0.0,-23.2758,-303.453:1:1:90:88,1:.:0.011:0:.:.:.:0:.:.:0:-0.00174608	0/1:120.532:259:164:6060:95:3689:-261.728,0.0,-474.992:95:37:259:159,93:38.0:0.37:2:3384,0,5938:.:1:1:.:.:1:-0.0116954
chr2	113977862	.	T	G	12940.5	REJECT	NS=2;DP=344;DPB=395.0;AC=4;AN=4;AF=1.0;RO=1;AO=394;PRO=0.0;PAO=0.0;QR=40;QA=14929;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=186;SAR=208;SRP=5.18177;SAP=5.67779;AB=0.0;ABP=0.0;RUN=1;RPP=3.56144;RPPR=5.18177;RPL=202.0;RPR=192.0;EPP=10.9687;EPPR=5.18177;DPRA=0.0;ODDS=61.0496;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997462;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.414;Dels=0.0;FS=0.0;HaplotypeScore=5.8434;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.636;QD=31.565;ReadPosRankSum=0.318;SOR=0.5625;ClippingRankSum=0.848	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.9:99:1:40:100:3727:-331.859,-23.7353,0.0:98:99:99:1,97:3969,250,0:1:.:1:.:.:.:-0.00174608	1/1:128.9:294:0:0:294:11202:-1007.56,-79.5899,0.0:294:100:294:0,294:12559,873,0:.:1:1:.:.:.:-0.0116954
chr2	113977936	.	C	T	10029.5	REJECT	NS=2;DP=362;DPB=414.0;AC=2;AN=4;AF=0.5;RO=87;AO=327;PRO=0.0;PAO=0.0;QR=3334;QA=12480;PQR=0.0;PQA=0.0;SRF=51;SRR=36;SAF=143;SAR=184;SRP=8.62618;SAP=14.1731;AB=0.789855;ABP=305.128;RUN=1;RPP=4.13256;RPPR=18.61;RPL=157.0;RPR=170.0;EPP=3.01694;EPPR=3.23494;DPRA=0.0;ODDS=118.063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9995;Dels=0.0;FS=10.1085;HaplotypeScore=7.7568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3795;QD=26.54;ReadPosRankSum=-0.977;SOR=0.9305;ClippingRankSum=1.136	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.749:102:47:1809:57:2209:-170.649,0.0,-134.631:56:55:102:45,55:1915,0,1630:1:.:1:.:.:.:-0.00174608	0/1:117.749:310:40:1525:270:10271:-839.895,0.0,-53.2407:270:87:310:40,270:10634,0,774:.:1:1:.:.:.:-0.0116954
chr2	113978650	.	C	T	1853.425	REJECT	NS=2;DP=378;DPB=422.0;AC=2;AN=4;AF=0.5;RO=323;AO=99;PRO=0.0;PAO=0.0;QR=12397;QA=3703;PQR=0.0;PQA=0.0;SRF=178;SRR=145;SAF=58;SAR=41;SRP=10.3315;SAP=9.34924;AB=0.234597;ABP=261.199;RUN=1;RPP=3.20771;RPPR=6.56667;RPL=48.0;RPR=51.0;EPP=3.55865;EPPR=3.55485;DPRA=0.0;ODDS=192.484;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979798;PAIREDR=0.996904;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3015;Dels=0.0;FS=0.4095;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8385;QD=11.185;ReadPosRankSum=-0.4335;SOR=0.774;ClippingRankSum=-0.571	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2745:85:39:1497:48:1753:-134.246,0.0,-111.22:46:54:85:38,45:1609,0,1261:1:.:1:.:.:.:-0.00174608	0/1:117.2745:335:284:10900:51:1950:-84.6584,0.0,-889.651:51:15:335:284,51:1219,0,11175:.:1:1:.:.:.:-0.0116954
chr2	113978940	.	C	G	1677.205	REJECT	NS=2;DP=370;DPB=417.0;AC=2;AN=4;AF=0.5;RO=324;AO=92;PRO=0.0;PAO=0.0;QR=12272;QA=3489;PQR=0.0;PQA=0.0;SRF=158;SRR=166;SAF=47;SAR=45;SRP=3.43923;SAP=3.10471;AB=0.220624;ABP=285.713;RUN=1;RPP=3.38795;RPPR=5.18177;RPL=44.0;RPR=48.0;EPP=5.3706;EPPR=6.2541;DPRA=0.0;ODDS=198.364;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9846;PAIRED=1.0;PAIREDR=0.993827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7515;Dels=0.0;FS=0.95;HaplotypeScore=9.701;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.315;QD=9.55;ReadPosRankSum=2.218;SOR=0.7725;ClippingRankSum=-0.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7815:91:50:1913:42:1545:-114.15,0.0,-147.302:42:46:91:48,42:1428,0,1674:1:.:1:.:.:.:-0.00174608	0/1:121.7815:323:274:10359:50:1944:-87.1386,0.0,-844.012:50:15:323:273,50:1231,0,10526:.:1:1:.:.:.:-0.0116954
chr2	113979355	.	G	C	2539.2	REJECT	NS=2;DP=420;DPB=485.0;AC=2;AN=4;AF=0.5;RO=368;AO=117;PRO=0.0;PAO=0.0;QR=14154;QA=4454;PQR=0.0;PQA=0.0;SRF=193;SRR=175;SAF=65;SAR=52;SRP=4.92214;SAP=6.14687;AB=0.241237;ABP=285.082;RUN=1;RPP=3.02886;RPPR=5.86626;RPL=58.0;RPR=59.0;EPP=3.91972;EPPR=3.10471;DPRA=0.0;ODDS=161.688;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3675;Dels=0.0;FS=3.341;HaplotypeScore=10.6364;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.582;QD=11.1;ReadPosRankSum=-0.83;SOR=0.852;ClippingRankSum=-0.495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:127:59:2283:69:2597:-199.031,0.0,-170.78:69:54:127:57,69:2474,0,2014:1:.:1:.:.:.:-0.00174608	0/1:129.501:356:309:11871:48:1857:-70.3355,0.0,-970.995:48:13:356:308,48:1023,0,12178:.:1:1:.:.:.:-0.0116954
chr2	113980645	.	C	G	2181.915	REJECT	NS=2;DP=407;DPB=466.0;AC=2;AN=4;AF=0.5;RO=363;AO=103;PRO=0.0;PAO=0.0;QR=13883;QA=3938;PQR=0.0;PQA=0.0;SRF=179;SRR=184;SAF=47;SAR=56;SRP=3.15985;SAP=4.71796;AB=0.22103;ABP=318.014;RUN=1;RPP=3.20004;RPPR=4.02126;RPL=53.0;RPR=50.0;EPP=3.20004;EPPR=3.15985;DPRA=0.0;ODDS=114.495;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.997245;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.946;Dels=0.0;FS=3.4105;HaplotypeScore=6.7717;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3515;QD=10.355;ReadPosRankSum=0.4035;SOR=0.932;ClippingRankSum=-2.115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.327:116:57:2128:61:2330:-177.754,0.0,-159.539:60:52:116:55,59:2169,0,1916:1:.:1:.:.:.:-0.00174608	0/1:117.327:348:306:11755:42:1608:-50.3769,0.0,-963.015:42:12:348:306,42:755,0,12099:.:1:1:.:.:.:-0.0116954
chr2	113980968	.	G	A	7096.72	REJECT	NS=2;DP=432;DPB=495.0;AC=2;AN=4;AF=0.5;RO=232;AO=262;PRO=0.0;PAO=0.0;QR=8776;QA=9506;PQR=0.0;PQA=0.0;SRF=124;SRR=108;SAF=135;SAR=127;SRP=5.40641;SAP=3.54074;AB=0.529293;ABP=6.69961;RUN=1;RPP=3.0103;RPPR=7.54044;RPL=131.0;RPR=131.0;EPP=3.30867;EPPR=13.8302;DPRA=0.0;ODDS=378.156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992366;PAIREDR=0.982759;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.852;Dels=0.0;FS=3.8775;HaplotypeScore=7.89;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3105;QD=17.76;ReadPosRankSum=0.2605;SOR=0.694;ClippingRankSum=-1.066	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:62:2324:61:2198:-164.539,0.0,-175.835:60:50:121:60,59:2007,0,2172:1:.:1:.:.:.:-0.00174608	0/1:129.501:370:170:6452:201:7308:-556.935,0.0,-479.892:201:54:370:169,201:7070,0,6054:.:1:1:.:.:.:-0.0116954
chr2	113981022	.	G	A	2326.3599999999997	REJECT	NS=2;DP=451;DPB=515.0;AC=2;AN=4;AF=0.5;RO=399;AO=115;PRO=0.0;PAO=0.0;QR=15171;QA=4427;PQR=0.0;PQA=0.0;SRF=194;SRR=205;SAF=51;SAR=64;SRP=3.66882;SAP=6.20142;AB=0.223301;ABP=345.492;RUN=1;RPP=3.02918;RPPR=4.23481;RPL=57.0;RPR=58.0;EPP=3.18024;EPPR=3.05928;DPRA=0.0;ODDS=194.077;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4405;Dels=0.0;FS=2.0755;HaplotypeScore=5.8041;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1185;QD=10.485;ReadPosRankSum=0.0385;SOR=0.858;ClippingRankSum=-0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:65:2393:60:2308:-173.85,0.0,-181.5:60:49:121:58,60:2150,0,1969:1:.:1:.:.:.:-0.00174608	0/1:129.501:388:334:12778:55:2119:-85.2701,0.0,-1043.87:55:14:387:331,55:1244,0,12936:.:1:1:.:.:.:-0.0116954
chr2	113981137	.	T	C	2409.745	REJECT	NS=2;DP=430;DPB=499.0;AC=2;AN=4;AF=0.5;RO=381;AO=117;PRO=0.0;PAO=0.0;QR=14570;QA=4466;PQR=0.0;PQA=0.0;SRF=198;SRR=183;SAF=60;SAR=57;SRP=4.29267;SAP=3.17734;AB=0.234469;ABP=308.605;RUN=1;RPP=5.25601;RPPR=3.9735;RPL=64.0;RPR=53.0;EPP=6.14687;EPPR=4.65743;DPRA=0.0;ODDS=180.808;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.989501;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.113;Dels=0.0;FS=2.0225;HaplotypeScore=6.8236;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6965;QD=9.75;ReadPosRankSum=-0.283;SOR=0.8275;ClippingRankSum=1.376	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.6155:135:73:2749:65:2498:-187.421,0.0,-209.98:64:47:135:69,63:2241,0,2356:1:.:1:.:.:.:-0.00174608	0/1:121.6155:361:308:11821:52:1968:-79.5024,0.0,-965.714:52:14:360:308,52:1107,0,12160:.:1:1:.:.:.:-0.0116954
chr2	113981810	.	A	G	1949.8899999999999	REJECT	NS=2;DP=351;DPB=394.0;AC=2;AN=4;AF=0.5;RO=301;AO=93;PRO=0.0;PAO=0.0;QR=11505;QA=3567;PQR=0.0;PQA=0.0;SRF=120;SRR=181;SAF=31;SAR=62;SRP=29.8543;SAP=25.4488;AB=0.236041;ABP=241.453;RUN=1;RPP=22.6469;RPPR=57.6145;RPL=61.0;RPR=32.0;EPP=3.03365;EPPR=5.0952;DPRA=0.0;ODDS=115.728;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978495;PAIREDR=0.986711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1915;Dels=0.0;FS=1.6955;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0175;QD=12.4;ReadPosRankSum=0.4055;SOR=0.9705;ClippingRankSum=0.161	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.372:83:32:1228:54:2054:-161.617,0.0,-87.2433:52:63:83:30,51:1883,0,977:1:.:1:.:.:.:-0.00174608	0/1:122.372:308:269:10277:39:1513:-52.6751,0.0,-840.95:39:13:308:269,39:784,0,10562:.:1:1:.:.:.:-0.0116954
chr2	113982039	.	A	G	3447.03	REJECT	NS=2;DP=111;DPB=128.0;AC=2;AN=2;AF=0.75;RO=0;AO=36;PRO=0.0;PAO=1.0;QR=0;QA=1200;PQR=0.0;PQA=35.0;SRF=0;SRR=0;SAF=21;SAR=15;SRP=0.0;SAP=5.18177;AB=0.283465;ABP=54.7324;RUN=1;RPP=9.04217;RPPR=0.0;RPL=23.0;RPR=13.0;EPP=3.9754;EPPR=0.0;DPRA=0.0;ODDS=34.6706;GTI=0;TYPE=snp;CIGAR=1X1M;NUMALT=2;MEANALT=2.0;LEN=1;MQM=59.5833;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=59.97;QD=31.395;SOR=0.9895	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.37:32:0:0:23:744:-88.7739,-27.8755,-21.6659:27:85:32:0,32:1273,95,0:1:.:1:.:.:.:-0.00174608	./1:118.4595:95:0:0:13:456:-265.542,-216.489,-211.899:54:57:95:0,96:3666,271,0:.:1:1:.:.:.:-0.0116954
chr2	113982039	.	AC	GA	3447.03	REJECT	NS=2;DP=127;DPB=128.0;AC=2;AN=2;AF=0.5;RO=0;AO=91;PRO=0.0;PAO=1.0;QR=0;QA=2975;PQR=0.0;PQA=35.0;SRF=0;SRR=0;SAF=52;SAR=39;SRP=0.0;SAP=7.04303;AB=0.716535;ABP=54.7324;RUN=1;RPP=4.17955;RPPR=0.0;RPL=49.0;RPR=42.0;EPP=3.22506;EPPR=0.0;DPRA=0.0;ODDS=34.6706;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=2;MEANALT=2.0;LEN=2;MQM=59.9341;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:149.74:33:0:0:10:339:-88.7739,-60.8984,-58.1917:10:30:33:.:.:1:.:.:.:-0.00174608	./1:137.919:94:0:0:81:2636:-265.542,-38.6129,-15.6829:81:86:94:.:.:1:.:.:.:-0.0116954
chr2	113982040	.	C	A	1515.77	PASS	DP=63;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.05;Dels=0.0;FS=0.56;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.079;QD=18.505;ReadPosRankSum=-0.158;SOR=0.7415;ClippingRankSum=0.436	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21,11:32:99.0:259,0,608:11:34:32:1:.:.:.:.:.:-0.00174608	0/1:13,81:94:99.0:2829,0,208:81:86:94:.:1:.:.:.:.:-0.0116954
chr2	113982143	.	G	A	273.095	REJECT	NS=2;DP=90;DPB=184.375;AC=2;AN=3;AF=0.25;RO=19;AO=7;PRO=112.0;PAO=63.0;QR=680;QA=275;PQR=3887.5;PQA=2122.0;SRF=6;SRR=13;SAF=0;SAR=7;SRP=8.61041;SAP=18.2106;AB=0.142857;ABP=26.2761;RUN=1;RPP=18.2106;RPPR=36.0395;RPL=0.0;RPR=7.0;EPP=18.2106;EPPR=5.8675;DPRA=0.0;ODDS=11.5168;GTI=0;TYPE=snp;CIGAR=19M1X12M;NUMALT=2;MEANALT=25.5;LEN=1;MQM=60.0;MQMR=59.8947;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.428;FS=5.943;MLEAC=1;MLEAF=0.5;MQ=58.8;MQRankSum=-1.198;QD=12.53;ReadPosRankSum=-0.599;SOR=0.935;ClippingRankSum=0.415	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:24:0:0:3:116:-31.8938,0.0,-37.0026:8:53:16:15,13:379,0,431:1:.:1:.:.:.:-0.00174608	./1:50.0169:69:19:680:4:159:0.0,-0.963357,-237.616:4:16:25:.:.:.:.:1:.:.:.:-0.0116954
chr2	113982150	.	TGGAT	GGGAG	273.095	REJECT	NS=2;DP=90;DPB=184.375;AC=2;AN=2;AF=0.0;RO=19;AO=4;PRO=112.0;PAO=26.0;QR=680;QA=55;PQR=3887.5;PQA=836.5;SRF=6;SRR=13;SAF=4;SAR=0;SRP=8.61041;SAP=11.6962;AB=0.0952381;ABP=32.8939;RUN=1;RPP=3.0103;RPPR=36.0395;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=5.8675;DPRA=0.0;ODDS=11.5168;GTI=0;TYPE=complex;CIGAR=26M1X3M1X1M;NUMALT=2;MEANALT=25.5;LEN=32;MQM=55.0;MQMR=59.8947;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:21:0:0:2:30:-31.8938,-41.1274,-162.703:2:40:5:.:.:1:.:.:.:-0.00174608	./1:50.0169:69:19:680:2:25:0.0,-39.7487,-480.402:2:8:25:.:.:1:.:.:.:-0.0116954
chr2	113982416	.	TATAAAATAAAATAAA	T	6699.215	PASS	DP=157;AC=2;AN=2;AF=0.5;SPLITMULTIALLELIC;MQ0=0;END=113982431;HOMLEN=33;HOMSEQ=ATAAAATAAAATAAAATAAAATAAAATAAAATA;SVLEN=-15;SVTYPE=DEL;BaseQRankSum=2.8795;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=1.483;QD=17.24;RPA=9;RU=ATAAA;ReadPosRankSum=-1.7685;SOR=1.0425;STR;ClippingRankSum=-1.199	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:12,40:40:57:70:65:99.0:2531,1357,1274:1:.:.:1:.:.:-0.00174608	./1:26,89:89:55:149:220:99.0:10942,5392,5951:.:1:.:1:.:.:-0.0116954
chr2	113982416	.	TATAAAATAAAATAAAATAAAATAAA	T	6699.215	PASS	DP=157;AC=2;AN=2;AF=0.5;SPLITMULTIALLELIC;MQ0=0;END=113982441;HOMLEN=23;HOMSEQ=ATAAAATAAAATAAAATAAAATA;SVLEN=-25;SVTYPE=DEL;BaseQRankSum=2.8795;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=1.483;QD=17.24;RPA=9;RU=ATAAA;ReadPosRankSum=-1.7685;SOR=1.0425;STR;ClippingRankSum=-1.199	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:12,50:50:64:77:65:99.0:2531,1184,1490:1:.:.:1:.:.:-0.00174608	./1:26,131:131:69:178:220:99.0:10942,4168,7703:.:1:.:1:.:.:-0.0116954
chr2	113982428	.	TAAA	T	639.024	REJECT	NS=2;DP=52;DPB=184.864;AC=2;AN=2;AF=0.0;RO=0;AO=12;PRO=130.5;PAO=60.5;QR=0;QA=458;PQR=4819.58;PQA=2173.25;SRF=0;SRR=0;SAF=8;SAR=4;SRP=0.0;SAP=5.9056;AB=0.230769;ABP=35.7494;RUN=1;RPP=29.068;RPPR=0.0;RPL=0.0;RPR=12.0;EPP=5.9056;EPPR=0.0;DPRA=0.0;ODDS=17.9669;GTI=0;TYPE=del;CIGAR=1M3D40M;NUMALT=3;MEANALT=5.0;LEN=3;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:139.212:28:0:0:1:39:-55.3522,-63.4511,-230.671:1:4:27:.:.:1:.:.:.:-0.00174608	./1:78.0294:24:0:0:11:419:-17.99,-6.23099,-391.303:11:52:21:.:.:1:.:.:.:-0.0116954
chr2	113982431	.	A	AAT	639.024	REJECT	NS=2;DP=52;DPB=184.864;AC=2;AN=3;AF=0.25;RO=0;AO=15;PRO=130.5;PAO=67.5;QR=0;QA=539;PQR=4819.58;PQA=2432.58;SRF=0;SRR=0;SAF=9;SAR=6;SRP=0.0;SAP=4.31318;AB=0.288462;ABP=23.2217;RUN=1;RPP=35.5824;RPPR=0.0;RPL=0.0;RPR=15.0;EPP=4.31318;EPPR=0.0;DPRA=0.0;ODDS=17.9669;GTI=0;TYPE=ins;CIGAR=4M2I40M;NUMALT=3;MEANALT=5.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:139.212:28:0:0:6:226:-55.3522,-43.4692,-191.514:6:22:27:.:.:1:.:.:.:-0.00174608	0/1:78.0294:24:0:0:9:313:-17.99,0.0,-321.128:9:43:21:.:.:1:.:.:.:-0.0116954
chr2	113982438	.	TAAA	T	639.024	REJECT	NS=2;DP=52;DPB=184.864;AC=2;AN=3;AF=0.25;RO=0;AO=21;PRO=130.5;PAO=84.5;QR=0;QA=687;PQR=4819.58;PQA=3097.58;SRF=0;SRR=0;SAF=13;SAR=8;SRP=0.0;SAP=5.59539;AB=0.403846;ABP=7.18621;RUN=1;RPP=15.5221;RPPR=0.0;RPL=5.0;RPR=16.0;EPP=3.1137;EPPR=0.0;DPRA=0.0;ODDS=17.9669;GTI=0;TYPE=del;CIGAR=11M3D30M;NUMALT=3;MEANALT=5.0;LEN=3;MQM=57.5714;MQMR=0.0;PAIRED=0.952381;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:139.212:28:0:0:20:647:-55.3522,0.0,-99.2539:20:74:27:.:.:1:.:.:.:-0.00174608	./1:78.0294:24:0:0:1:40:-17.99,-42.5716,-361.009:1:5:21:.:.:1:.:.:.:-0.0116954
chr2	113982584	.	T	C	2154.99	REJECT	NS=2;DP=369;DPB=426.0;AC=2;AN=4;AF=0.5;RO=322;AO=103;PRO=0.0;PAO=0.0;QR=12299;QA=3862;PQR=0.0;PQA=0.0;SRF=150;SRR=172;SAF=36;SAR=67;SRP=6.27425;SAP=23.2703;AB=0.241784;ABP=249.722;RUN=1;RPP=5.56125;RPPR=3.25307;RPL=46.0;RPR=57.0;EPP=3.03138;EPPR=3.03727;DPRA=0.0;ODDS=168.143;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980583;PAIREDR=0.984472;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.242;Dels=0.0;FS=5.407;HaplotypeScore=6.7928;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3205;QD=10.845;ReadPosRankSum=0.7235;SOR=1.179;ClippingRankSum=0.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:56:2151:55:2090:-158.03,0.0,-163.529:54:50:110:55,54:2093,0,3592:1:.:1:.:.:.:-0.00174608	0/1:129.501:314:266:10148:48:1772:-74.401,0.0,-827.735:47:15:313:265,47:994,0,10307:.:1:1:.:.:.:-0.0116954
chr2	113982608	.	G	A	2334.59	REJECT	NS=2;DP=372;DPB=428.0;AC=2;AN=4;AF=0.5;RO=324;AO=102;PRO=0.0;PAO=0.0;QR=12499;QA=3949;PQR=0.0;PQA=0.0;SRF=158;SRR=166;SAF=44;SAR=58;SRP=3.43923;SAP=7.18293;AB=0.238318;ABP=257.58;RUN=1;RPP=6.07591;RPPR=37.7539;RPL=45.0;RPR=57.0;EPP=4.37279;EPPR=3.11753;DPRA=0.0;ODDS=129.983;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.970588;PAIREDR=0.987654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.266;Dels=0.0;FS=3.49;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.53;QD=12.225;ReadPosRankSum=1.2055;SOR=0.926;ClippingRankSum=0.352	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:47:1773:61:2349:-182.152,0.0,-130.316:61:57:107:45,61:2404,0,3217:1:.:1:.:.:.:-0.00174608	0/1:129.501:318:277:10726:41:1600:-57.7718,0.0,-878.584:40:13:317:276,40:806,0,11019:.:1:1:.:.:.:-0.0116954
chr2	113984033	.	G	A	11204.6	REJECT	NS=2;DP=403;DPB=464.0;AC=2;AN=4;AF=0.5;RO=99;AO=365;PRO=0.0;PAO=0.0;QR=3808;QA=13930;PQR=0.0;PQA=0.0;SRF=46;SRR=53;SAF=185;SAR=180;SRP=4.08507;SAP=3.15903;AB=0.786638;ABP=334.141;RUN=1;RPP=6.72857;RPPR=4.78696;RPL=195.0;RPR=170.0;EPP=3.49219;EPPR=9.34924;DPRA=0.0;ODDS=109.081;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986301;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2625;Dels=0.0;FS=5.5;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.879;QD=26.58;ReadPosRankSum=-0.5335;SOR=0.6515;ClippingRankSum=0.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:58:2230:62:2364:-180.231,0.0,-168.178:61:52:118:56,60:2193,0,2057:1:.:1:.:.:.:-0.00174608	0/1:129.501:343:41:1578:303:11566:-947.097,0.0,-48.8073:302:88:343:41,302:11862,0,759:.:1:1:.:.:.:-0.0116954
chr2	113984246	.	G	GTCA	1621.47	REJECT	NS=2;DP=317;DPB=407.923;AC=2;AN=4;AF=0.5;RO=233;AO=75;PRO=88.0;PAO=90.0;QR=8855;QA=2744;PQR=3137.0;PQA=3208.0;SRF=122;SRR=111;SAF=47;SAR=28;SRP=4.13797;SAP=13.4623;AB=0.236593;ABP=194.052;RUN=1;RPP=7.90335;RPPR=13.1594;RPL=31.0;RPR=44.0;EPP=5.35549;EPPR=3.09418;DPRA=0.0;ODDS=152.296;GTI=0;TYPE=ins;CIGAR=1M3I25M;NUMALT=1;MEANALT=4.5;LEN=3;MQM=60.8;MQMR=60.0;PAIRED=0.986667;PAIREDR=0.987124;technology.ILLUMINA=1.0;BaseQRankSum=-0.669;FS=7.501;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=-0.472;QD=14.72;ReadPosRankSum=-0.447;SOR=1.581;ClippingRankSum=1.071	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4645:86:46:1754:36:1350:-101.815,0.0,-135.379:39:46:85:46,43:1553,0,1791:1:.:1:.:.:.:-0.00174608	0/1:135.929:234:187:7101:39:1394:-67.5037,0.0,-577.295:39:17:226:.:.:.:.:1:.:.:.:-0.0116954
chr2	113984303	.	T	C	2072.4449999999997	REJECT	NS=2;DP=388;DPB=447.0;AC=2;AN=4;AF=0.5;RO=341;AO=104;PRO=0.0;PAO=0.0;QR=12882;QA=3909;PQR=0.0;PQA=0.0;SRF=174;SRR=167;SAF=60;SAR=44;SRP=3.32233;SAP=8.35546;AB=0.232662;ABP=280.497;RUN=1;RPP=3.09382;RPPR=3.06761;RPL=53.0;RPR=51.0;EPP=13.116;EPPR=5.81857;DPRA=0.0;ODDS=169.577;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.6731;MQMR=60.0293;PAIRED=0.980769;PAIREDR=0.994135;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.28;Dels=0.0;FS=2.8885;HaplotypeScore=5.8236;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.0885;QD=9.76;ReadPosRankSum=-0.301;SOR=1.0085;ClippingRankSum=1.35	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0475:115:60:2307:56:2091:-156.772,0.0,-176.208:55:48:115:59,55:1932,0,2062:1:.:1:.:.:.:-0.00174608	0/1:120.0475:330:281:10575:48:1818:-74.5123,0.0,-862.096:48:15:329:281,48:1055,0,10761:.:1:1:.:.:.:-0.0116954
chr2	113985170	.	C	T	1618.71	REJECT	NS=2;DP=387;DPB=436.0;AC=2;AN=4;AF=0.5;RO=346;AO=89;PRO=0.0;PAO=0.0;QR=13377;QA=3471;PQR=0.0;PQA=0.0;SRF=164;SRR=182;SAF=53;SAR=36;SRP=5.0437;SAP=10.0615;AB=0.204128;ABP=334.528;RUN=1;RPP=3.0347;RPPR=5.52067;RPL=45.0;RPR=44.0;EPP=3.62026;EPPR=4.61694;DPRA=0.0;ODDS=181.645;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99422;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7275;Dels=0.0;FS=6.519;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.148;QD=8.765;ReadPosRankSum=0.635;SOR=1.092;ClippingRankSum=0.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.611:95:56:2158:40:1562:-114.581,0.0,-168.228:40:42:95:54,40:1384,0,1986:1:.:1:.:.:.:-0.00174608	0/1:117.611:338:290:11219:49:1909:-79.8706,0.0,-917.218:49:14:338:289,49:1131,0,11505:.:1:1:.:.:.:-0.0116954
chr2	113985186	.	C	G	1454.69	REJECT	NS=2;DP=380;DPB=430.0;AC=2;AN=4;AF=0.5;RO=345;AO=85;PRO=0.0;PAO=0.0;QR=13357;QA=3197;PQR=0.0;PQA=0.0;SRF=166;SRR=179;SAF=51;SAR=34;SRP=4.07401;SAP=10.3933;AB=0.197674;ABP=344.386;RUN=1;RPP=5.07959;RPPR=3.16765;RPL=47.0;RPR=38.0;EPP=8.75832;EPPR=4.8293;DPRA=0.0;ODDS=144.438;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988406;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5255;Dels=0.0;FS=6.7565;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0885;QD=7.97;ReadPosRankSum=0.504;SOR=1.1115;ClippingRankSum=-0.397	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:58:2243:40:1478:-106.48,0.0,-175.361:39:41:96:56,39:1296,0,2102:1:.:1:.:.:.:-0.00174608	0/1:129.501:331:287:11114:45:1719:-64.6844,0.0,-909.692:45:14:331:285,45:929,0,11374:.:1:1:.:.:.:-0.0116954
chr2	113986629	.	C	T	2124.94	REJECT	NS=2;DP=373;DPB=427.0;AC=2;AN=4;AF=0.5;RO=322;AO=104;PRO=0.0;PAO=0.0;QR=12240;QA=3994;PQR=0.0;PQA=0.0;SRF=179;SRR=143;SAF=55;SAR=49;SRP=11.7501;SAP=3.76196;AB=0.24356;ABP=246.912;RUN=1;RPP=3.34437;RPPR=3.1182;RPL=54.0;RPR=50.0;EPP=3.76196;EPPR=6.27425;DPRA=0.0;ODDS=210.417;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990683;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.91;Dels=0.0;FS=4.647;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.639;QD=10.86;ReadPosRankSum=-0.101;SOR=0.5445;ClippingRankSum=-0.971	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.649:106:55:2086:52:2008:-151.741,0.0,-158.758:51:49:106:54,51:1896,0,1878:1:.:1:.:.:.:-0.00174608	0/1:117.649:320:267:10154:52:1986:-92.2754,0.0,-826.91:52:16:319:267,52:1285,0,10368:.:1:1:.:.:.:-0.0116954
chr2	113988492	.	G	A	2199.8900000000003	REJECT	NS=2;DP=402;DPB=450.0;AC=2;AN=4;AF=0.5;RO=340;AO=110;PRO=0.0;PAO=0.0;QR=12867;QA=4148;PQR=0.0;PQA=0.0;SRF=162;SRR=178;SAF=62;SAR=48;SRP=4.64529;SAP=6.87947;AB=0.244444;ABP=258.279;RUN=1;RPP=3.08926;RPPR=8.75832;RPL=56.0;RPR=54.0;EPP=4.98437;EPPR=7.3277;DPRA=0.0;ODDS=190.21;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=0.997059;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.556;Dels=0.0;FS=4.98;HaplotypeScore=7.8651;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.379;QD=12.12;ReadPosRankSum=1.1505;SOR=0.8975;ClippingRankSum=-0.964	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:38:1430:57:2149:-167.714,0.0,-102.997:56:60:93:37,55:1976,0,1240:1:.:1:.:.:.:-0.00174608	0/1:129.501:355:302:11437:53:1999:-83.7357,0.0,-932.532:53:15:355:302,53:1199,0,11617:.:1:1:.:.:.:-0.0116954
chr2	113989122	.	A	AG	1837.55	REJECT	NS=2;DP=434;DPB=476.333;AC=2;AN=4;AF=0.5;RO=339;AO=92;PRO=11.5;PAO=11.5;QR=12870;QA=3405;PQR=321.5;PQA=321.5;SRF=176;SRR=163;SAF=43;SAR=49;SRP=4.09283;SAP=3.86001;AB=0.211982;ABP=315.722;RUN=1;RPP=4.52089;RPPR=9.16601;RPL=42.0;RPR=50.0;EPP=3.86001;EPPR=3.52915;DPRA=0.0;ODDS=95.5905;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99705;technology.ILLUMINA=1.0;END=113989122;HOMLEN=1;HOMSEQ=G;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.795;FS=2.448;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.996;QD=15.88;ReadPosRankSum=-0.891;SOR=0.488;ClippingRankSum=0.069	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:79,73:60:50:110:129.501:109:54:2032:53:1957:-147.143,0.0,-153.921:1895,0,1540:1:.:1:1:.:.:-0.00174608	0/1:318,63:51:14:352:160.002:325:285:10838:39:1448:-42.474,0.0,-887.138:.:.:.:1:1:.:.:-0.0116954
chr2	113989236	.	C	T	2210.145	REJECT	NS=2;DP=397;DPB=461.0;AC=2;AN=4;AF=0.5;RO=352;AO=109;PRO=0.0;PAO=0.0;QR=13046;QA=4081;PQR=0.0;PQA=0.0;SRF=166;SRR=186;SAF=46;SAR=63;SRP=5.47788;SAP=8.76769;AB=0.236443;ABP=281.152;RUN=1;RPP=19.7645;RPPR=26.7238;RPL=40.0;RPR=69.0;EPP=24.7051;EPPR=18.4327;DPRA=0.0;ODDS=137.127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988636;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2905;Dels=0.0;FS=1.163;HaplotypeScore=5.8764;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3105;QD=9.705;ReadPosRankSum=1.2225;SOR=0.8345;ClippingRankSum=0.077	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:126:65:2361:63:2396:-180.959,0.0,-177.814:62:49:126:62,62:2125,0,2023:1:.:1:.:.:.:-0.00174608	0/1:129.501:333:287:10685:46:1685:-61.4834,0.0,-870.94:46:14:333:287,46:906,0,10869:.:1:1:.:.:.:-0.0116954
chr2	113989267	.	T	C	1873.315	REJECT	NS=2;DP=362;DPB=423.0;AC=2;AN=4;AF=0.5;RO=326;AO=96;PRO=0.0;PAO=0.0;QR=12444;QA=3672;PQR=0.0;PQA=0.0;SRF=145;SRR=181;SAF=32;SAR=64;SRP=11.6429;SAP=26.1727;AB=0.22695;ABP=276.939;RUN=1;RPP=20.744;RPPR=25.4178;RPL=62.0;RPR=34.0;EPP=6.26751;EPPR=3.11688;DPRA=0.0;ODDS=153.647;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984663;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0675;Dels=0.0;FS=6.5965;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.384;QD=8.72;ReadPosRankSum=0.499;SOR=1.223;ClippingRankSum=-0.837	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.797:118:66:2457:54:2031:-150.295,0.0,-188.63:53:45:118:63,53:1714,0,2138:1:.:1:.:.:.:-0.00174608	0/1:118.797:302:260:9987:42:1641:-65.8021,0.0,-816.494:42:14:301:259,42:944,0,10224:.:1:1:.:.:.:-0.0116954
chr2	113989327	.	T	C	604.5995	REJECT	NS=2;DP=201;DPB=229.0;AC=2;AN=4;AF=0.5;RO=188;AO=41;PRO=0.0;PAO=0.0;QR=7052;QA=1557;PQR=0.0;PQA=0.0;SRF=55;SRR=133;SAF=7;SAR=34;SRP=73.2828;SAP=41.6201;AB=0.179039;ABP=207.916;RUN=1;RPP=3.48696;RPPR=23.3852;RPL=22.0;RPR=19.0;EPP=3.48696;EPPR=5.9672;DPRA=0.0;ODDS=66.0471;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8564;PAIRED=1.0;PAIREDR=0.994681;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7815;Dels=0.0;FS=4.1475;HaplotypeScore=5.8817;MLEAC=1;MLEAF=0.5;MQ=59.865;MQRankSum=-0.2635;QD=5.98;ReadPosRankSum=1.187;SOR=1.3965;ClippingRankSum=-0.583	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:38:1416:18:679:-45.9943,0.0,-112.379:18:32:55:37,18:548,0,1361:1:.:1:.:.:.:-0.00174608	0/1:129.501:173:150:5636:23:878:-32.1474,0.0,-460.222:23:13:173:150,23:462,0,5763:.:1:1:.:.:.:-0.0116954
chr2	113990242	.	T	C	2168.84	REJECT	NS=2;DP=399;DPB=452.0;AC=2;AN=4;AF=0.5;RO=341;AO=110;PRO=0.0;PAO=0.0;QR=13039;QA=4228;PQR=0.0;PQA=0.0;SRF=162;SRR=179;SAF=64;SAR=46;SRP=4.85064;SAP=9.40627;AB=0.243363;ABP=261.588;RUN=1;RPP=12.5648;RPPR=3.01667;RPL=44.0;RPR=66.0;EPP=3.08926;EPPR=3.1695;DPRA=0.0;ODDS=234.629;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.326;Dels=0.0;FS=7.8875;HaplotypeScore=3.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0075;QD=10.81;ReadPosRankSum=0.539;SOR=1.051;ClippingRankSum=0.109	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:52:1983:54:2039:-154.808,0.0,-149.772:53:50:104:51,52:1856,0,1814:1:.:1:.:.:.:-0.00174608	0/1:129.501:346:289:11056:56:2189:-103.442,0.0,-900.981:56:16:345:289,56:1430,0,11325:.:1:1:.:.:.:-0.0116954
chr2	113990261	.	G	A	2345.825	REJECT	NS=2;DP=408;DPB=464.0;AC=2;AN=4;AF=0.5;RO=349;AO=115;PRO=0.0;PAO=0.0;QR=13373;QA=4375;PQR=0.0;PQA=0.0;SRF=160;SRR=189;SAF=62;SAR=53;SRP=8.24299;SAP=4.53977;AB=0.247845;ABP=259.263;RUN=1;RPP=4.53977;RPPR=4.06182;RPL=53.0;RPR=62.0;EPP=6.20142;EPPR=3.01652;DPRA=0.0;ODDS=212.751;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991304;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.331;Dels=0.0;FS=4.0325;HaplotypeScore=7.7651;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0505;QD=11.26;ReadPosRankSum=1.0555;SOR=0.796;ClippingRankSum=0.842	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.202:110:51:1927:61:2279:-174.773,0.0,-143.115:60:54:110:50,59:2103,0,1697:1:.:1:.:.:.:-0.00174608	0/1:118.202:352:298:11446:54:2096:-93.2241,0.0,-934.107:54:15:352:298,54:1315,0,11687:.:1:1:.:.:.:-0.0116954
chr2	113990393	.	C	A	1843.425	REJECT	NS=2;DP=317;DPB=365.0;AC=2;AN=4;AF=0.5;RO=272;AO=92;PRO=0.0;PAO=0.0;QR=10330;QA=3456;PQR=0.0;PQA=0.0;SRF=131;SRR=141;SAF=33;SAR=59;SRP=3.80864;SAP=18.9659;AB=0.252055;ABP=197.913;RUN=1;RPP=3.38795;RPPR=15.7837;RPL=48.0;RPR=44.0;EPP=7.63648;EPPR=17.0929;DPRA=0.0;ODDS=158.288;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0205;Dels=0.0;FS=10.313;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.131;QD=10.61;ReadPosRankSum=-0.022;SOR=1.318;ClippingRankSum=-0.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9715:94:44:1709:50:1851:-141.148,0.0,-128.384:49:53:93:44,49:1667,0,1562:1:.:1:.:.:.:-0.00174608	0/1:119.9715:270:228:8621:42:1605:-71.3012,0.0,-702.34:42:16:270:228,42:999,0,8761:.:1:1:.:.:.:-0.0116954
chr2	113990612	.	T	C	84.77	PASS	SOMATIC;DP=154;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-5.272;Dels=0.0;FS=76.004;HaplotypeScore=60.2868;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=-0.496;QD=0.55;ReadPosRankSum=-0.083;SOR=6.868	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:118,36:154:99.0:113,0,3056:36:23:154:.:1:.:.:.:.:-0.0116954
chr2	113990617	.	T	C	144.77	PASS	SOMATIC;DP=148;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-3.513;Dels=0.0;FS=80.951;HaplotypeScore=60.2078;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=-0.467;QD=0.98;ReadPosRankSum=-0.914;SOR=6.438	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:115,30:148:99.0:173,0,2995:30:21:145:.:1:.:.:.:.:-0.0116954
chr2	113990622	.	T	C	152.77	PASS	SOMATIC;DP=148;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-4.363;Dels=0.0;FS=82.892;HaplotypeScore=42.1484;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=-1.834;QD=1.03;ReadPosRankSum=0.118;SOR=4.161	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:120,28:148:99.0:181,0,3317:28:19:148:.:1:.:.:.:.:-0.0116954
chr2	113990907	.	G	A	1645.5	REJECT	NS=2;DP=146;DPB=229.476;AC=2;AN=2;AF=0.0;RO=29;AO=6;PRO=42.1333;PAO=10.8;QR=1045;QA=72;PQR=1468.93;PQA=372.6;SRF=11;SRR=18;SAF=0;SAR=6;SRP=6.67934;SAP=16.0391;AB=0.0410959;ABP=270.072;RUN=1;RPP=4.45795;RPPR=3.68421;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=4.88226;DPRA=0.0;ODDS=60.759;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.653:38:9:331:2:28:-44.128,-58.9622,-240.464:2:6:35:.:.:1:.:.:.:-0.00174608	./1:134.653:108:20:714:4:44:-131.066,-189.146,-842.578:4:4:92:.:.:1:.:.:.:-0.0116954
chr2	113990907	.	G	GA	1423.115	REJECT	NS=2;DP=146;DPB=229.476;AC=2;AN=4;AF=0.5;RO=29;AO=76;PRO=42.1333;PAO=45.1333;QR=1045;QA=2097;PQR=1468.93;PQA=1565.93;SRF=11;SRR=18;SAF=19;SAR=57;SRP=6.67934;SAP=44.2683;AB=0.520548;ABP=3.54573;RUN=1;RPP=3.46745;RPPR=3.68421;RPL=40.0;RPR=36.0;EPP=12.2676;EPPR=4.88226;DPRA=0.0;ODDS=60.759;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=59.8684;MQMR=60.0;PAIRED=0.986842;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.9315;FS=4.6625;MLEAC=1;MLEAF=0.5;MQ=60.485;MQRankSum=0.611;QD=7.39;RPA=15,16;RU=A;ReadPosRankSum=-0.414;SOR=0.9375;STR;ClippingRankSum=-0.69	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:110.8265:33:9:331:20:555:-44.128,0.0,-27.2365:20:66:31:7,21:370,0,87:1:.:1:.:.:.:-0.00174608	0/1:116.8265:147:20:714:56:1542:-131.066,0.0,-45.1676:68:66:102:31,81:1238,0,251:.:1:1:.:.:.:-0.0116954
chr2	113990907	.	G	AA	1645.5	REJECT	NS=2;DP=146;DPB=229.476;AC=2;AN=2;AF=0.0;RO=29;AO=5;PRO=42.1333;PAO=10.8;QR=1045;QA=86;PQR=1468.93;PQA=372.6;SRF=11;SRR=18;SAF=0;SAR=5;SRP=6.67934;SAP=13.8677;AB=0.0342466;ABP=278.103;RUN=1;RPP=3.44459;RPPR=3.68421;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=4.88226;DPRA=0.0;ODDS=60.759;GTI=0;TYPE=complex;CIGAR=1X1I20M;NUMALT=4;MEANALT=9.5;LEN=22;MQM=70.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.653:38:9:331:3:42:-44.128,-57.9715,-239.217:3:9:35:.:.:1:.:.:.:-0.00174608	./1:134.653:108:20:714:2:44:-131.066,-188.604,-842.157:2:2:92:.:.:1:.:.:.:-0.0116954
chr2	113990907	.	G	GAA	1645.5	REJECT	NS=2;DP=146;DPB=229.476;AC=2;AN=2;AF=0.0;RO=29;AO=11;PRO=42.1333;PAO=40.1333;QR=1045;QA=331;PQR=1468.93;PQA=1389.93;SRF=11;SRR=18;SAF=5;SAR=6;SRP=6.67934;SAP=3.20771;AB=0.0753425;ABP=231.699;RUN=1;RPP=4.78696;RPPR=3.68421;RPL=4.0;RPR=7.0;EPP=4.78696;EPPR=4.88226;DPRA=0.0;ODDS=60.759;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=4;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.653:38:9:331:1:16:-44.128,-44.7698,-77.118:1:3:35:.:.:1:.:.:.:-0.00174608	./1:134.653:108:20:714:10:315:-131.066,-111.113,-169.507:10:11:92:.:.:1:.:.:.:-0.0116954
chr2	113991260	.	AC	A	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=2;AN=2;AF=0.5;RO=0;AO=15;PRO=22.8143;PAO=34.231;QR=0;QA=547;PQR=803.467;PQA=1216.13;SRF=0;SRR=0;SAF=9;SAR=6;SRP=0.0;SAP=4.31318;AB=0.12;ABP=159.791;RUN=1;RPP=14.7363;RPPR=0.0;RPL=3.0;RPR=12.0;EPP=6.62942;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=del;CIGAR=7M1D22M;NUMALT=6;MEANALT=18.0;LEN=1;MQM=56.6667;MQMR=0.0;PAIRED=0.933333;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=113991261;HOMLEN=0;SVLEN=-1;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:.:3:14:21:8.14892:27:0:0:3:89:-196.634,-66.6637,-54.8104:.:.:1:.:.:.:-0.00174608	./1:63,21:16:21:78:160.002:98:0:0:12:458:-567.111,-226.039,-194.347:.:.:1:1:.:.:-0.0116954
chr2	113991261	.	C	A	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=2;AN=2;AF=0.5;RO=0;AO=48;PRO=22.8143;PAO=34.731;QR=0;QA=1804;PQR=803.467;PQA=1240.13;SRF=0;SRR=0;SAF=36;SAR=12;SRP=0.0;SAP=29.068;AB=0.384;ABP=17.62;RUN=1;RPP=21.1059;RPPR=0.0;RPL=14.0;RPR=34.0;EPP=29.068;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=snp;CIGAR=7M1X22M;NUMALT=6;MEANALT=18.0;LEN=1;MQM=59.375;MQMR=0.0;PAIRED=0.979167;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.783;FS=2.917;MLEAC=2;MLEAF=1.0;MQ=59.08;MQRankSum=-1.41;QD=18.24;ReadPosRankSum=-0.574;SOR=0.197;ClippingRankSum=-0.888	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.07446:25:0:0:11:434:-196.634,-21.0421,-5.57923:16:72:22:2,22:630,20,0:1:.:1:.:.:.:-0.00174608	./1:160.002:98:0:0:37:1370:-567.111,-74.5328,-29.5784:37:51:72:.:.:.:.:1:.:.:.:-0.0116954
chr2	113991261	.	C	AA	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=0;AN=4;AF=0.0;RO=0;AO=12;PRO=22.8143;PAO=34.3976;QR=0;QA=380;PQR=803.467;PQA=1192.13;SRF=0;SRR=0;SAF=9;SAR=3;SRP=0.0;SAP=9.52472;AB=0.096;ABP=180.22;RUN=1;RPP=3.73412;RPPR=0.0;RPL=5.0;RPR=7.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=complex;CIGAR=1M1I6M1X22M;NUMALT=6;MEANALT=18.0;LEN=31;MQM=56.4167;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.14892:27:0:0:2:62:-196.634,-59.1728,-46.933:2:10:21:.:.:.:.:.:.:-0.00174608	0/0:160.002:98:0:0:10:318:-567.111,-232.677,-201.017:10:14:72:.:.:.:.:.:.:-0.0116954
chr2	113991261	.	C	AAA	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=0;AN=4;AF=0.0;RO=0;AO=3;PRO=22.8143;PAO=32.3976;QR=0;QA=86;PQR=803.467;PQA=1109.13;SRF=0;SRR=0;SAF=3;SAR=0;SRP=0.0;SAP=9.52472;AB=0.024;ABP=249.012;RUN=1;RPP=3.73412;RPPR=0.0;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=complex;CIGAR=1M2I6M1X22M;NUMALT=6;MEANALT=18.0;LEN=32;MQM=53.3333;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.14892:27:0:0:2:55:-196.634,-61.9584,-49.7377:2:10:21:.:.:.:.:.:.:-0.00174608	0/0:160.002:98:0:0:1:31:-567.111,-260.712,-232.001:1:1:72:.:.:.:.:.:.:-0.0116954
chr2	113991261	.	CAAAAAAAC	AAAAAAAACA	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=0;AN=4;AF=0.0;RO=0;AO=6;PRO=22.8143;PAO=23.7143;QR=0;QA=159;PQR=803.467;PQA=788.833;SRF=0;SRR=0;SAF=6;SAR=0;SRP=0.0;SAP=16.0391;AB=0.048;ABP=224.831;RUN=1;RPP=8.80089;RPPR=0.0;RPL=1.0;RPR=5.0;EPP=8.80089;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=complex;CIGAR=7M1X8M1I14M;NUMALT=6;MEANALT=18.0;LEN=31;MQM=57.8333;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.14892:27:0:0:1:28:-196.634,-162.581,-351.805:1:5:21:.:.:.:.:.:.:-0.00174608	0/0:160.002:98:0:0:5:131:-567.111,-440.605,-798.347:5:7:72:.:.:.:.:.:.:-0.0116954
chr2	113991261	.	CAAAAAAACAAAAAAAAAAGGGT	AAAAAAAACAAAAAAAAAAGGGG	7478.26	REJECT	NS=2;DP=125;DPB=215.967;AC=0;AN=4;AF=0.0;RO=0;AO=9;PRO=22.8143;PAO=6.71429;QR=0;QA=135;PQR=803.467;PQA=248.167;SRF=0;SRR=0;SAF=9;SAR=0;SRP=0.0;SAP=22.5536;AB=0.072;ABP=201.9;RUN=1;RPP=9.04217;RPPR=0.0;RPL=7.0;RPR=2.0;EPP=9.04217;EPPR=0.0;DPRA=0.0;ODDS=1.71224;GTI=0;TYPE=complex;CIGAR=7M1X21M1X;NUMALT=6;MEANALT=18.0;LEN=30;MQM=59.2222;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.14892:27:0:0:2:28:-196.634,-187.79,-610.758:2:10:21:.:.:.:.:.:.:-0.00174608	0/0:160.002:98:0:0:7:107:-567.111,-498.641,-2012.18:7:10:72:.:.:.:.:.:.:-0.0116954
chr2	113991970	.	A	G	1120.48	REJECT	NS=2;DP=240;DPB=271.0;AC=2;AN=4;AF=0.5;RO=214;AO=57;PRO=0.0;PAO=0.0;QR=8143;QA=2144;PQR=0.0;PQA=0.0;SRF=101;SRR=113;SAF=20;SAR=37;SRP=4.47148;SAP=14.02;AB=0.210332;ABP=200.518;RUN=1;RPP=3.35316;RPPR=3.0103;RPL=30.0;RPR=27.0;EPP=3.0484;EPPR=14.7403;DPRA=0.0;ODDS=60.2633;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3385;Dels=0.0;FS=2.06;HaplotypeScore=1.9654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.508;QD=10.455;ReadPosRankSum=1.4885;SOR=1.0635;ClippingRankSum=-0.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:59:28:1033:32:1208:-92.5593,0.0,-76.786:31:53:59:27,31:1137,0,846:1:.:1:.:.:.:-0.00174608	0/1:129.501:210:186:7110:25:936:-27.0302,0.0,-582.486:25:12:210:185,25:405,0,7323:.:1:1:.:.:.:-0.0116954
chr2	113992201	.	G	A	551.573	REJECT	NS=2;DP=112;DPB=129.0;AC=2;AN=4;AF=0.5;RO=99;AO=30;PRO=0.0;PAO=0.0;QR=3702;QA=1153;PQR=0.0;PQA=0.0;SRF=49;SRR=50;SAF=13;SAR=17;SRP=3.03223;SAP=4.16842;AB=0.232558;ABP=83.1528;RUN=1;RPP=5.61607;RPPR=3.20771;RPL=18.0;RPR=12.0;EPP=4.16842;EPPR=21.4568;DPRA=0.0;ODDS=61.497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.969697;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1815;Dels=0.0;FS=1.551;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4825;QD=9.13;ReadPosRankSum=1.6045;SOR=1.063;ClippingRankSum=1.159	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:32:18:664:15:564:-41.9185,0.0,-50.9442:14:44:32:18,14:495,0,653:1:.:1:.:.:.:-0.00174608	0/1:129.501:96:81:3038:15:589:-27.0192,0.0,-247.462:15:16:96:81,15:381,0,3083:.:1:1:.:.:.:-0.0116954
chr2	113992374	.	G	C	879.275	REJECT	NS=2;DP=205;DPB=233.0;AC=2;AN=4;AF=0.5;RO=187;AO=46;PRO=0.0;PAO=0.0;QR=7082;QA=1775;PQR=0.0;PQA=0.0;SRF=141;SRR=46;SAF=35;SAR=11;SRP=107.81;SAP=30.2009;AB=0.197425;ABP=188.294;RUN=1;RPP=12.2627;RPPR=12.7761;RPL=16.0;RPR=30.0;EPP=3.0103;EPPR=28.6615;DPRA=0.0;ODDS=17.7319;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8824;PAIRED=1.0;PAIREDR=0.989305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6515;Dels=0.0;FS=3.53;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.0485;QD=10.135;ReadPosRankSum=0.9645;SOR=0.903;ClippingRankSum=-2.325	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.37:53:25:926:29:1118:-86.0993,0.0,-68.7798:28:53:53:25,28:1048,0,827:1:.:1:.:.:.:-0.00174608	0/1:88.00435:178:162:6156:17:657:-10.6343,0.0,-505.217:17:9:178:161,17:211,0,6297:.:1:1:.:.:.:-0.0116954
chr2	113992800	.	TCC	T	2164.38	REJECT	NS=2;DP=391;DPB=384.429;AC=2;AN=4;AF=0.5;RO=289;AO=101;PRO=29.0;PAO=14.0;QR=10834;QA=3684;PQR=1016.5;PQA=503.5;SRF=120;SRR=169;SAF=35;SAR=66;SRP=21.0508;SAP=23.6715;AB=0.258312;ABP=201.392;RUN=1;RPP=4.75178;RPPR=4.70089;RPL=55.0;RPR=46.0;EPP=7.84774;EPPR=7.70639;DPRA=0.0;ODDS=137.713;GTI=0;TYPE=del;CIGAR=1M2D4M;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.198;MQMR=60.0;PAIRED=0.990099;PAIREDR=0.99654;technology.ILLUMINA=1.0;END=113992802;HOMLEN=2;HOMSEQ=CC;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=1.196;FS=6.56;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1.221;QD=20.82;ReadPosRankSum=0.961;SOR=0.286;ClippingRankSum=-0.102	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:75,78:60:56:108:129.501:107:45:1686:60:2131:-162.82,0.0,-128.309:2369,0,1811:1:.:1:1:.:.:-0.00174608	0/1:289,60:50:15:317:160.002:285:244:9148:41:1553:-61.9547,0.0,-785.839:.:.:.:1:1:.:.:-0.0116954
chr2	113993344	.	A	C	1495.355	REJECT	NS=2;DP=270;DPB=318.0;AC=2;AN=4;AF=0.5;RO=241;AO=76;PRO=0.0;PAO=0.0;QR=8874;QA=2724;PQR=0.0;PQA=0.0;SRF=110;SRR=131;SAF=35;SAR=41;SRP=6.98382;SAP=4.03889;AB=0.238994;ABP=191.177;RUN=1;RPP=4.03889;RPPR=3.4518;RPL=41.0;RPR=35.0;EPP=4.83891;EPPR=6.98382;DPRA=0.0;ODDS=79.8721;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986842;PAIREDR=0.995851;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4825;Dels=0.0;FS=2.7925;HaplotypeScore=11.611;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0445;QD=8.805;ReadPosRankSum=0.9005;SOR=0.9885;ClippingRankSum=-1.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.662:94:52:1964:44:1663:-123.703,0.0,-150.776:43:46:94:50,43:1483,0,1799:1:.:1:.:.:.:-0.00174608	0/1:123.662:222:189:6910:32:1061:-35.6963,0.0,-562.275:32:14:221:189,32:501,0,6952:.:1:1:.:.:.:-0.0116954
chr2	113993385	.	C	G	1307.09	REJECT	NS=2;DP=261;DPB=305.0;AC=2;AN=4;AF=0.5;RO=241;AO=64;PRO=0.0;PAO=0.0;QR=8661;QA=2445;PQR=0.0;PQA=0.0;SRF=137;SRR=104;SAF=40;SAR=24;SRP=12.8225;SAP=11.6962;AB=0.209836;ABP=226.06;RUN=1;RPP=3.14602;RPPR=3.4518;RPL=33.0;RPR=31.0;EPP=14.0034;EPPR=32.2846;DPRA=0.0;ODDS=57.8006;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.96875;PAIREDR=0.995851;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4955;Dels=0.0;FS=1.813;HaplotypeScore=15.3737;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1925;QD=8.825;ReadPosRankSum=0.868;SOR=0.7165;ClippingRankSum=0.807	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:48:1779:39:1505:-111.914,0.0,-136.586:39:45:86:47,39:1393,0,1678:1:.:1:.:.:.:-0.00174608	0/1:129.501:217:193:6882:25:940:-26.078,0.0,-560.11:24:11:217:193,24:414,0,6893:.:1:1:.:.:.:-0.0116954
chr2	113993608	.	G	A	61.6046	REJECT	NS=2;DP=313;DPB=313.0;AC=2;AN=3;AF=0.25;RO=267;AO=31;PRO=0.0;PAO=0.0;QR=8927;QA=981;PQR=0.0;PQA=0.0;SRF=125;SRR=142;SAF=21;SAR=10;SRP=5.3607;SAP=11.486;AB=0.161616;ABP=101.472;RUN=1;RPP=14.8483;RPPR=15.3804;RPL=9.0;RPR=22.0;EPP=6.44263;EPPR=5.3607;DPRA=0.0;ODDS=14.185;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=36.0;MQMR=47.1273;PAIRED=0.935484;PAIREDR=0.996255;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.658;FS=11.496;MLEAC=1;MLEAF=0.5;MQ=51.74;MQRankSum=-2.008;QD=1.75;ReadPosRankSum=0.527;SOR=1.126;ClippingRankSum=-0.859	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:80.30225:92:78:2643:16:502:-11.3009,0.0,-196.648:15:16:92:71,14:177,0,2238:1:.:1:.:.:.:-0.00174608	./1:160.002:214:189:6284:15:479:0.0,-19.3517,-472.918:15:7:214:.:.:.:.:1:.:.:.:-0.0116954
chr2	113993608	.	G	C	61.6046	REJECT	NS=2;DP=313;DPB=313.0;AC=2;AN=2;AF=0.0;RO=267;AO=15;PRO=0.0;PAO=0.0;QR=8927;QA=226;PQR=0.0;PQA=0.0;SRF=125;SRR=142;SAF=4;SAR=11;SRP=5.3607;SAP=10.1038;AB=0.0505051;ABP=176.75;RUN=1;RPP=14.7363;RPPR=15.3804;RPL=3.0;RPR=12.0;EPP=27.4756;EPPR=5.3607;DPRA=0.0;ODDS=14.185;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=22.6;MQMR=47.1273;PAIRED=1.0;PAIREDR=0.996255;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:61.6045:99:78:2643:5:66:-11.3009,-29.0704,-229.442:5:5:99:.:.:1:.:.:.:-0.00174608	./1:160.002:214:189:6284:10:160:0.0,-40.7923,-496.583:10:5:214:.:.:1:.:.:.:-0.0116954
chr2	113993734	.	G	C	52.77	PASS	DP=81;AC=1;AN=4;AF=0.5;BaseQRankSum=1.125;FS=7.591;MLEAC=1;MLEAF=0.5;MQ=45.32;MQRankSum=1.678;QD=0.65;ReadPosRankSum=-3.104;SOR=0.324;ClippingRankSum=-0.883	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:35,45:80:81.0:81,0,995:45:56:80:1:.:.:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0116954
chr2	113993789	.	A	G	18.5286	REJECT	NS=2;DP=298;DPB=298.0;AC=1;AN=4;AF=0.25;RO=260;AO=34;PRO=0.0;PAO=0.0;QR=8973;QA=972;PQR=0.0;PQA=0.0;SRF=145;SRR=115;SAF=13;SAR=21;SRP=10.5269;SAP=7.09778;AB=0.164706;ABP=86.0116;RUN=1;RPP=3.26577;RPPR=5.71629;RPL=18.0;RPR=16.0;EPP=7.09778;EPPR=9.55812;DPRA=0.0;ODDS=4.25222;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=27.7059;MQMR=39.3308;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18.5286:85:70:2362:14:471:-6.05047,0.0,-150.346:14:17:84:.:.:1:.:.:.:-0.00174608	0/0:160.002:213:190:6611:20:501:0.0,-18.7888,-465.519:20:10:210:.:.:0:.:.:.:-0.0116954
chr2	114035923	.	A	G	918.816	REJECT	NS=1;DP=84;DPB=84.0;AC=1;AN=4;AF=0.5;RO=48;AO=35;PRO=0.0;PAO=0.0;QR=1759;QA=1331;PQR=0.0;PQA=0.0;SRF=37;SRR=11;SAF=22;SAR=13;SRP=33.5919;SAP=8.03571;AB=0.416667;ABP=8.07707;RUN=1;RPP=10.5174;RPPR=3.0103;RPL=12.0;RPR=23.0;EPP=3.07234;EPPR=3.19126;DPRA=0.0;ODDS=211.565;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.697;FS=6.529;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.666;QD=14.12;ReadPosRankSum=0.506;SOR=0.25;ClippingRankSum=1.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.822:83:48:1759:35:1331:-97.7424,0.0,-135.883:35:42:82:47,35:1200,0,1659:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	120014609	.	C	T	7144.200000000001	REJECT	NS=2;DP=317;DPB=358.0;AC=3;AN=4;AF=0.75;RO=103;AO=255;PRO=0.0;PAO=0.0;QR=4003;QA=9717;PQR=0.0;PQA=0.0;SRF=53;SRR=50;SAF=149;SAR=106;SRP=3.20004;SAP=18.7556;AB=0.626812;ABP=41.5618;RUN=1;RPP=76.6615;RPPR=10.621;RPL=81.0;RPR=174.0;EPP=6.08442;EPPR=3.20004;DPRA=0.0;ODDS=52.1473;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992157;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.594;Dels=0.0;FS=2.101;HaplotypeScore=5.8656;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.797;QD=27.3;ReadPosRankSum=-0.695;SOR=1.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:82:3136:-282.339,-22.2213,0.0:81:100:81:0,81:3461,243,0:1:.:1:.:.:.:-0.00174608	0/1:129.501:276:103:4003:173:6581:-517.193,0.0,-285.336:173:63:276:103,173:6473,0,3664:.:1:1:.:.:.:-0.0116954
chr2	121713022	.	C	G	1830.97	REJECT	NS=1;DP=58;DPB=58.0;AC=2;AN=4;AF=1.0;RO=0;AO=58;PRO=0.0;PAO=0.0;QR=0;QA=2128;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=15;SAR=43;SRP=0.0;SAP=32.3626;AB=0.0;ABP=0.0;RUN=1;RPP=28.3192;RPPR=0.0;RPL=42.0;RPR=16.0;EPP=3.60933;EPPR=0.0;DPRA=0.0;ODDS=40.7543;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.41;SOR=2.147	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.908:58:0:0:58:2128:-191.68,-15.6994,0.0:58:100:58:0,58:2571,175,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	121713030	.	G	A	1652.51	REJECT	NS=1;DP=54;DPB=54.0;AC=2;AN=4;AF=1.0;RO=0;AO=54;PRO=0.0;PAO=0.0;QR=0;QA=1959;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=13;SAR=41;SRP=0.0;SAP=34.5369;AB=0.0;ABP=0.0;RUN=1;RPP=44.1879;RPPR=0.0;RPL=43.0;RPR=11.0;EPP=10.8919;EPPR=0.0;DPRA=0.0;ODDS=38.2591;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.31;SOR=2.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.077:54:0:0:54:1959:-176.485,-14.6157,0.0:54:100:54:0,54:2488,169,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	121726447	.	G	A	12234.099999999999	REJECT	NS=2;DP=322;DPB=366.0;AC=4;AN=4;AF=1.0;RO=0;AO=366;PRO=0.0;PAO=0.0;QR=0;QA=14059;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=139;SAR=227;SRP=0.0;SAP=48.9553;AB=0.0;ABP=0.0;RUN=1;RPP=19.0531;RPPR=0.0;RPL=209.0;RPR=157.0;EPP=13.4761;EPPR=0.0;DPRA=0.0;ODDS=58.0232;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991803;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.055;SOR=1.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.756:85:0:0:86:3333:-300.073,-23.3241,0.0:85:100:85:0,84:3625,253,0:1:.:1:.:.:.:-0.00174608	1/1:123.756:279:0:0:280:10726:-964.788,-75.8281,0.0:279:100:279:0,279:11962,831,0:.:1:1:.:.:.:-0.0116954
chr2	121729490	.	C	T	2440.67	REJECT	NS=1;DP=76;DPB=76.0;AC=2;AN=4;AF=1.0;RO=0;AO=75;PRO=0.0;PAO=0.0;QR=0;QA=2819;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=46;SAR=29;SRP=0.0;SAP=11.3777;AB=0.0;ABP=0.0;RUN=1;RPP=56.5443;RPPR=0.0;RPL=16.0;RPR=59.0;EPP=5.35549;EPPR=0.0;DPRA=0.0;ODDS=51.4034;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986667;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.97;SOR=1.24	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.685:75:0:0:75:2819:-253.851,-20.3242,0.0:75:100:75:0,75:3189,225,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	121745879	.	A	T	20.5306	REJECT	NS=2;DP=117;DPB=117.0;AC=1;AN=4;AF=0.25;RO=109;AO=8;PRO=0.0;PAO=0.0;QR=4210;QA=307;PQR=0.0;PQA=0.0;SRF=43;SRR=66;SAF=1;SAR=7;SRP=13.5489;SAP=12.7819;AB=0.166667;ABP=20.3821;RUN=1;RPP=4.09604;RPPR=13.5489;RPL=5.0;RPR=3.0;EPP=3.0103;EPPR=5.42083;DPRA=0.0;ODDS=4.71845;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.303;FS=2.823;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.711;QD=2.71;ReadPosRankSum=0.592;SOR=1.751;ClippingRankSum=-0.474	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:48.7653:18:15:593:3:117:-5.67929,0.0,-48.7392:3:17:18:15,3:77,0,610:1:.:1:.:.:.:-0.00174608	0/0:111.422:99:94:3617:5:190:0.0,-9.73943,-308.495:5:5:99:.:.:.:.:0:.:.:.:-0.0116954
chr2	121746956	.	G	T	20076.75	REJECT	NS=2;DP=544;DPB=623.0;AC=4;AN=4;AF=1.0;RO=1;AO=620;PRO=0.0;PAO=0.0;QR=15;QA=23319;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=284;SAR=336;SRP=5.18177;SAP=12.4807;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=310.0;RPR=310.0;EPP=11.0798;EPPR=5.18177;DPRA=0.0;ODDS=102.788;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995161;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.725;Dels=0.0;FS=0.0;HaplotypeScore=14.6132;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.116;QD=30.455;ReadPosRankSum=-0.161;SOR=0.5675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:157:0:0:158:5912:-531.931,-42.7651,0.0:157:100:157:0,156:6336,468,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:465:1:15:462:17407:-1564.07,-123.91,0.0:462:100:463:1,462:19275,1339,0:.:1:1:.:.:.:-0.0116954
chr2	121747406	.	G	A	16046.6	REJECT	NS=2;DP=420;DPB=482.0;AC=4;AN=4;AF=1.0;RO=0;AO=482;PRO=0.0;PAO=0.0;QR=0;QA=18558;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=208;SAR=274;SRP=0.0;SAP=22.6346;AB=0.0;ABP=0.0;RUN=1;RPP=3.89331;RPPR=0.0;RPL=248.0;RPR=234.0;EPP=4.46996;EPPR=0.0;DPRA=0.0;ODDS=80.4083;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989627;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.94;SOR=0.946	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:121:0:0:122:4652:-418.651,-33.0458,0.0:121:100:121:0,120:5007,360,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:359:0:0:360:13906:-1250.71,-97.5098,0.0:359:100:359:0,358:15493,1069,0:.:1:1:.:.:.:-0.0116954
chr2	121747429	.	A	G	14618.599999999999	REJECT	NS=2;DP=388;DPB=439.0;AC=4;AN=4;AF=1.0;RO=1;AO=438;PRO=0.0;PAO=0.0;QR=40;QA=16713;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=195;SAR=243;SRP=5.18177;SAP=14.4328;AB=0.0;ABP=0.0;RUN=1;RPP=9.43548;RPPR=5.18177;RPL=237.0;RPR=201.0;EPP=3.50607;EPPR=5.18177;DPRA=0.0;ODDS=66.1013;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990868;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.687;Dels=0.0;FS=0.0;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.42;QD=32.15;ReadPosRankSum=1.035;SOR=0.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.819:98:0:0:99:3790:-341.161,-26.8324,0.0:98:100:98:0,97:4133,291,0:1:.:1:.:.:.:-0.00174608	1/1:125.819:339:1:40:339:12923:-1158.66,-88.4248,0.0:338:100:339:1,337:14319,952,0:.:1:1:.:.:.:-0.0116954
chr2	127504051	.	G	A	1008.64	REJECT	NS=2;DP=252;DPB=293.0;AC=2;AN=4;AF=0.5;RO=239;AO=54;PRO=0.0;PAO=0.0;QR=9114;QA=2118;PQR=0.0;PQA=0.0;SRF=188;SRR=51;SAF=40;SAR=14;SRP=173.539;SAP=30.1939;AB=0.1843;ABP=256.658;RUN=1;RPP=26.1727;RPPR=103.18;RPL=15.0;RPR=39.0;EPP=3.6537;EPPR=9.63375;DPRA=0.0;ODDS=9.59375;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995816;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.454;Dels=0.0;FS=4.2125;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.099;QD=8.345;ReadPosRankSum=0.8835;SOR=0.3625;ClippingRankSum=-0.533	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7795:80:45:1712:36:1415:-105.425,0.0,-132.185:35:44:80:45,35:1314,0,1685:1:.:1:.:.:.:-0.00174608	0/1:70.3327:212:194:7402:18:703:-5.83162,0.0,-608.457:18:8:212:194,18:160,0,7640:.:1:1:.:.:.:-0.0116954
chr2	128079806	.	A	G	7556.12	REJECT	NS=2;DP=301;DPB=347.0;AC=2;AN=4;AF=0.5;RO=84;AO=262;PRO=0.0;PAO=0.0;QR=3223;QA=9749;PQR=0.0;PQA=0.0;SRF=21;SRR=63;SAF=55;SAR=207;SRP=48.6112;SAP=194.498;AB=0.755043;ABP=199.062;RUN=1;RPP=13.7516;RPPR=8.07707;RPL=149.0;RPR=113.0;EPP=4.63476;EPPR=6.73282;DPRA=0.0;ODDS=149.366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.7619;PAIRED=0.996183;PAIREDR=0.97619;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1345;Dels=0.0;FS=5.332;HaplotypeScore=9.7623;MLEAC=1;MLEAF=0.5;MQ=59.965;MQRankSum=-0.574;QD=23.98;ReadPosRankSum=-0.8515;SOR=0.947;ClippingRankSum=-0.215	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:45:1713:45:1692:-127.936,0.0,-129.82:43:49:87:44,41:1406,0,1588:1:.:1:.:.:.:-0.00174608	0/1:129.501:256:39:1510:217:8057:-655.447,0.0,-66.5674:216:85:255:38,216:8124,0,900:.:1:1:.:.:.:-0.0116954
chr2	133489401	.	A	G	1423.135	REJECT	NS=2;DP=378;DPB=426.0;AC=2;AN=4;AF=0.5;RO=345;AO=79;PRO=0.0;PAO=0.0;QR=13159;QA=2971;PQR=0.0;PQA=0.0;SRF=183;SRR=162;SAF=33;SAR=46;SRP=5.78601;SAP=7.6556;AB=0.185446;ABP=369.123;RUN=1;RPP=6.33623;RPPR=3.31871;RPL=34.0;RPR=45.0;EPP=4.35716;EPPR=3.31871;DPRA=0.0;ODDS=82.1113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.8957;PAIRED=0.974684;PAIREDR=0.994203;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.086;Dels=0.0;FS=6.354;HaplotypeScore=6.9098;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.933;QD=8.27;ReadPosRankSum=0.6265;SOR=0.9195;ClippingRankSum=-0.689	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:51:1927:41:1565:-116.335,0.0,-148.53:40:45:90:49,40:1409,0,1814:1:.:1:.:.:.:-0.00174608	0/1:129.501:331:294:11232:38:1406:-36.5842,0.0,-920.356:38:11:331:292,38:585,0,11479:.:1:1:.:.:.:-0.0116954
chr2	133489601	.	A	G	4881.59	REJECT	NS=2;DP=316;DPB=362.0;AC=2;AN=4;AF=0.5;RO=184;AO=178;PRO=0.0;PAO=0.0;QR=7027;QA=6857;PQR=0.0;PQA=0.0;SRF=76;SRR=108;SAF=57;SAR=121;SRP=15.095;SAP=52.9786;AB=0.491713;ABP=3.22625;RUN=1;RPP=6.13332;RPPR=4.19045;RPL=97.0;RPR=81.0;EPP=20.6261;EPPR=16.6528;DPRA=0.0;ODDS=273.647;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.826;Dels=0.0;FS=7.087;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4425;QD=18.27;ReadPosRankSum=0.013;SOR=1.304;ClippingRankSum=0.234	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:43:1608:49:1896:-145.756,0.0,-119.816:48:53:90:42,47:1748,0,1439:1:.:1:.:.:.:-0.00174608	0/1:129.501:270:141:5419:129:4961:-373.115,0.0,-414.309:129:48:270:141,129:4734,0,5249:.:1:1:.:.:.:-0.0116954
chr2	133539566	.	G	A	5312.82	REJECT	NS=2;DP=339;DPB=388.0;AC=2;AN=4;AF=0.5;RO=192;AO=196;PRO=0.0;PAO=0.0;QR=7322;QA=7424;PQR=0.0;PQA=0.0;SRF=113;SRR=79;SAF=108;SAR=88;SRP=16.0844;SAP=7.44188;AB=0.505155;ABP=3.09985;RUN=1;RPP=10.4997;RPPR=6.67466;RPL=85.0;RPR=111.0;EPP=5.18177;EPPR=3.19126;DPRA=0.0;ODDS=276.94;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994898;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1585;Dels=0.0;FS=5.5335;HaplotypeScore=5.8965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0255;QD=19.04;ReadPosRankSum=0.5045;SOR=0.649;ClippingRankSum=-0.63	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.317:97:43:1631:55:2074:-160.143,0.0,-120.271:55:56:97:41,55:2005,0,1449:1:.:1:.:.:.:-0.00174608	0/1:119.317:290:149:5691:141:5350:-402.685,0.0,-433.374:141:49:290:149,141:5100,0,5521:.:1:1:.:.:.:-0.0116954
chr2	133540605	.	G	T	3344.98	PASS	SOMATIC;NS=2;DP=420;DPB=420.0;AC=1;AN=3;AF=0.25;RO=297;AO=123;PRO=0.0;PAO=0.0;QR=11316;QA=4724;PQR=0.0;PQA=0.0;SRF=134;SRR=163;SAF=48;SAR=75;SRP=9.15915;SAP=15.8802;AB=0.398058;ABP=30.9021;RUN=1;RPP=3.87536;RPPR=6.23461;RPL=65.0;RPR=58.0;EPP=3.45166;EPPR=4.24592;DPRA=2.78378;ODDS=70.1976;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993266;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.93;Dels=0.0;FS=4.653;HaplotypeScore=6.8322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.84;QD=13.95;ReadPosRankSum=-0.105;SOR=0.97	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:110:111:4220:0:0:0.0,-30.0604,-379.797:0:0:110:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:309:186:7096:123:4724:-341.221,0.0,-554.587:123:40:309:181,118:38.0:0.391:2:4340,0,6993:.:1:1:.:.:1:-0.0116954
chr2	133541107	.	T	A	1930.355	REJECT	NS=2;DP=396;DPB=452.0;AC=2;AN=4;AF=0.5;RO=354;AO=98;PRO=0.0;PAO=0.0;QR=13571;QA=3741;PQR=0.0;PQA=0.0;SRF=175;SRR=179;SAF=53;SAR=45;SRP=3.10845;SAP=4.4284;AB=0.216814;ABP=317.855;RUN=1;RPP=3.36483;RPPR=5.46394;RPL=47.0;RPR=51.0;EPP=22.9524;EPPR=11.8679;DPRA=0.0;ODDS=150.153;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997175;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.125;Dels=0.0;FS=1.745;HaplotypeScore=7.8124;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.885;QD=9.525;ReadPosRankSum=0.9445;SOR=0.8205;ClippingRankSum=-0.408	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:60:2283:51:1964:-146.673,0.0,-175.414:51:46:110:59,51:1825,0,2043:1:.:1:.:.:.:-0.00174608	0/1:129.501:340:294:11288:47:1777:-67.488,0.0,-922.931:47:14:340:293,47:1001,0,11552:.:1:1:.:.:.:-0.0116954
chr2	133541444	.	T	C	4847.01	REJECT	NS=2;DP=313;DPB=356.0;AC=2;AN=4;AF=0.5;RO=185;AO=171;PRO=0.0;PAO=0.0;QR=7211;QA=6555;PQR=0.0;PQA=0.0;SRF=104;SRR=81;SAF=83;SAR=88;SRP=9.21954;SAP=3.32777;AB=0.480337;ABP=4.20583;RUN=1;RPP=15.2137;RPPR=3.58545;RPL=101.0;RPR=70.0;EPP=16.8392;EPPR=3.30374;DPRA=0.0;ODDS=250.616;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994152;PAIREDR=0.994595;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.392;Dels=0.0;FS=4.595;HaplotypeScore=6.7401;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3345;QD=17.88;ReadPosRankSum=1.4935;SOR=0.6165;ClippingRankSum=-0.617	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:46:1795:39:1482:-110.378,0.0,-138.553:38:46:84:45,38:1520,0,3450:1:.:1:.:.:.:-0.00174608	0/1:129.501:271:139:5416:132:5073:-382.905,0.0,-413.744:132:49:271:139,132:4905,0,5263:.:1:1:.:.:.:-0.0116954
chr2	133541454	.	A	G	5174.790000000001	REJECT	NS=2;DP=334;DPB=379.0;AC=2;AN=4;AF=0.5;RO=196;AO=183;PRO=0.0;PAO=0.0;QR=7492;QA=7053;PQR=0.0;PQA=0.0;SRF=106;SRR=90;SAF=87;SAR=96;SRP=5.84651;SAP=3.97144;AB=0.48285;ABP=3.97858;RUN=1;RPP=6.43957;RPPR=8.37251;RPL=100.0;RPR=83.0;EPP=11.6606;EPPR=6.59988;DPRA=0.0;ODDS=294.089;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994536;PAIREDR=0.994898;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.71;Dels=0.0;FS=4.8855;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.746;QD=18.405;ReadPosRankSum=0.138;SOR=0.7765;ClippingRankSum=-0.326	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:46:1738:44:1699:-128.565,0.0,-132.07:43:49:89:45,43:1733,0,3445:1:.:1:.:.:.:-0.00174608	0/1:129.501:289:150:5754:139:5354:-403.307,0.0,-439.289:139:48:289:150,139:5132,0,5585:.:1:1:.:.:.:-0.0116954
chr2	133541575	.	C	T	2388.44	PASS	SOMATIC;NS=2;DP=310;DPB=310.0;AC=1;AN=3;AF=0.25;RO=222;AO=88;PRO=0.0;PAO=0.0;QR=8550;QA=3399;PQR=0.0;PQA=0.0;SRF=110;SRR=112;SAF=38;SAR=50;SRP=3.04943;SAP=6.56362;AB=0.389381;ABP=27.031;RUN=1;RPP=5.47788;RPPR=8.64439;RPL=49.0;RPR=39.0;EPP=3.109;EPPR=6.92286;DPRA=2.69048;ODDS=53.415;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995495;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.329;Dels=0.0;FS=3.822;HaplotypeScore=4.9214;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.069;QD=13.78;ReadPosRankSum=-0.487;SOR=0.961	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.444:81:84:3229:0:0:0.0,-22.7719,-290.708:0:0:81:79,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:119.222:226:138:5321:88:3399:-244.54,0.0,-417.43:88:39:226:137,86:38.0:0.385:2:3142,0,5281:.:1:1:.:.:1:-0.0116954
chr2	133542014	.	T	C	5525.16	REJECT	NS=2;DP=355;DPB=408.0;AC=2;AN=4;AF=0.5;RO=206;AO=201;PRO=0.0;PAO=0.0;QR=7813;QA=7566;PQR=0.0;PQA=0.0;SRF=104;SRR=102;SAF=102;SAR=99;SRP=3.05246;SAP=3.10753;AB=0.492647;ABP=3.2019;RUN=1;RPP=3.0211;RPPR=3.17896;RPL=100.0;RPR=101.0;EPP=5.44105;EPPR=5.70883;DPRA=0.0;ODDS=317.252;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99005;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0905;Dels=0.0;FS=1.0495;HaplotypeScore=3.8711;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.01;QD=17.18;ReadPosRankSum=0.568;SOR=0.6825;ClippingRankSum=-0.105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:53:2030:49:1847:-138.607,0.0,-155.09:48:48:101:53,48:1696,0,1859:1:.:1:.:.:.:-0.00174608	0/1:129.501:304:153:5783:152:5719:-431.853,0.0,-437.615:151:50:303:152,150:5437,0,5505:.:1:1:.:.:.:-0.0116954
chr2	133542545	.	G	A	3445.11	PASS	SOMATIC;NS=2;DP=446;DPB=446.0;AC=1;AN=3;AF=0.25;RO=317;AO=129;PRO=0.0;PAO=0.0;QR=11981;QA=4965;PQR=0.0;PQA=0.0;SRF=153;SRR=164;SAF=66;SAR=63;SRP=3.83916;SAP=3.1618;AB=0.361345;ABP=62.6254;RUN=1;RPP=3.02713;RPPR=3.18155;RPL=65.0;RPR=64.0;EPP=3.83512;EPPR=7.29159;DPRA=4.01124;ODDS=56.4831;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9369;PAIRED=1.0;PAIREDR=0.987382;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.631;Dels=0.0;FS=0.843;HaplotypeScore=8.6821;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.87;QD=12.57;ReadPosRankSum=0.156;SOR=0.715	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.673:85:89:3378:0:0:0.0,-24.1043,-304.083:0:0:85:81,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:118.8365:356:228:8603:129:4965:-349.947,0.0,-677.078:129:36:356:218,121:38.0:0.353:2:4504,0,8409:.:1:1:.:.:1:-0.0116954
chr2	133542574	.	C	T	2168.4449999999997	REJECT	NS=2;DP=385;DPB=434.0;AC=2;AN=4;AF=0.5;RO=330;AO=104;PRO=0.0;PAO=0.0;QR=12621;QA=3956;PQR=0.0;PQA=0.0;SRF=168;SRR=162;SAF=45;SAR=59;SRP=3.24719;SAP=7.10269;AB=0.239631;ABP=258.564;RUN=1;RPP=5.09825;RPPR=18.1711;RPL=57.0;RPR=47.0;EPP=6.01695;EPPR=3.11558;DPRA=0.0;ODDS=157.815;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8077;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.987879;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.936;Dels=0.0;FS=4.9035;HaplotypeScore=11.7202;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.036;QD=12.0;ReadPosRankSum=-0.605;SOR=0.6225;ClippingRankSum=-0.404	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2935:95:40:1576:57:2168:-168.856,0.0,-115.571:56:59:95:38,56:2046,0,1317:1:.:1:.:.:.:-0.00174608	0/1:120.2935:336:290:11045:47:1788:-69.5921,0.0,-902.149:46:14:336:290,46:956,0,11318:.:1:1:.:.:.:-0.0116954
chr2	133542585	.	C	G	2741.22	PASS	SOMATIC;NS=2;DP=400;DPB=400.0;AC=1;AN=3;AF=0.25;RO=295;AO=104;PRO=0.0;PAO=0.0;QR=11326;QA=4037;PQR=0.0;PQA=0.0;SRF=142;SRR=153;SAF=51;SAR=53;SRP=3.90097;SAP=3.09382;AB=0.33657;ABP=74.697;RUN=1;RPP=3.76196;RPPR=4.2543;RPL=55.0;RPR=49.0;EPP=6.01695;EPPR=3.07655;DPRA=3.3956;ODDS=57.783;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.9322;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.046;Dels=0.0;FS=2.623;HaplotypeScore=10.7562;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.578;QD=11.62;ReadPosRankSum=1.689;SOR=0.617	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.122:90:91:3505:0:0:0.0,-24.6689,-315.53:0:0:90:89,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:119.061:308:204:7821:104:4037:-279.701,0.0,-620.034:104:34:307:194,97:38.0:0.326:2:3606,0,7740:.:1:1:.:.:1:-0.0116954
chr2	133554288	.	A	G	4750.790000000001	REJECT	NS=2;DP=315;DPB=360.0;AC=2;AN=4;AF=0.5;RO=187;AO=173;PRO=0.0;PAO=0.0;QR=7126;QA=6610;PQR=0.0;PQA=0.0;SRF=63;SRR=124;SAF=50;SAR=123;SRP=46.2191;SAP=69.8992;AB=0.480556;ABP=4.19255;RUN=1;RPP=28.4278;RPPR=20.6724;RPL=109.0;RPR=64.0;EPP=3.3241;EPPR=7.20229;DPRA=0.0;ODDS=276.27;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99422;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.214;Dels=0.0;FS=1.567;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.931;QD=17.035;ReadPosRankSum=0.672;SOR=0.905;ClippingRankSum=-0.556	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:45:1691:43:1639:-123.713,0.0,-128.39:43:49:87:44,43:1489,0,1610:1:.:1:.:.:.:-0.00174608	0/1:129.501:271:142:5435:130:4971:-373.47,0.0,-415.234:129:48:271:141,129:4712,0,5211:.:1:1:.:.:.:-0.0116954
chr2	133618220	.	A	G	962.715	REJECT	NS=2;DP=206;DPB=233.0;AC=2;AN=4;AF=0.5;RO=177;AO=56;PRO=0.0;PAO=0.0;QR=6691;QA=2125;PQR=0.0;PQA=0.0;SRF=42;SRR=135;SAF=14;SAR=42;SRP=109.118;SAP=33.4109;AB=0.240343;ABP=139.459;RUN=1;RPP=78.0812;RPPR=220.023;RPL=50.0;RPR=6.0;EPP=12.937;EPPR=32.4663;DPRA=0.0;ODDS=116.124;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0085;Dels=0.0;FS=0.422;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3145;QD=9.855;ReadPosRankSum=0.3215;SOR=0.502;ClippingRankSum=-2.832	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:53:29:1074:24:934:-69.7824,0.0,-82.3966:24:45:53:29,24:849,0,1041:1:.:1:.:.:.:-0.00174608	0/1:129.501:180:148:5617:32:1191:-58.3876,0.0,-456.635:32:18:180:148,32:787,0,5766:.:1:1:.:.:.:-0.0116954
chr2	133683658	.	G	T	4482.92	REJECT	NS=1;DP=132;DPB=132.0;AC=2;AN=4;AF=1.0;RO=0;AO=132;PRO=0.0;PAO=0.0;QR=0;QA=5071;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=60;SAR=72;SRP=0.0;SAP=5.37918;AB=0.0;ABP=0.0;RUN=1;RPP=37.8197;RPPR=0.0;RPL=89.0;RPR=43.0;EPP=10.9724;EPPR=0.0;DPRA=0.0;ODDS=86.9542;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.984848;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.18;SOR=0.859	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.7045:130:0:0:132:5071:-456.326,-35.7637,0.0:130:100:130:0,128:5046,384,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	134060719	.	T	C	1476.67	PASS	SOMATIC;NS=2;DP=217;DPB=217.0;AC=1;AN=3;AF=0.25;RO=158;AO=59;PRO=0.0;PAO=0.0;QR=6005;QA=2260;PQR=0.0;PQA=0.0;SRF=31;SRR=127;SAF=13;SAR=46;SRP=129.67;SAP=43.0905;AB=0.355422;ABP=33.1493;RUN=1;RPP=19.2411;RPPR=59.3037;RPL=40.0;RPR=19.0;EPP=3.93042;EPPR=9.66215;DPRA=3.2549;ODDS=32.8548;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983051;PAIREDR=0.993671;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.94;Dels=0.0;FS=1.61;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.27;QD=12.39;ReadPosRankSum=0.971;SOR=0.505	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.719:51:51:1939:0:0:0.0,-13.8427,-174.735:0:0:51:51,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:165:107:4066:59:2260:-158.387,0.0,-320.865:59:36:165:104,59:38.0:0.364:2:2072,0,3982:.:1:1:.:.:1:-0.0116954
chr2	139519524	.	C	T	8105.72	REJECT	NS=2;DP=355;DPB=395.0;AC=3;AN=4;AF=0.75;RO=119;AO=276;PRO=0.0;PAO=0.0;QR=4498;QA=10620;PQR=0.0;PQA=0.0;SRF=57;SRR=62;SAF=130;SAR=146;SRP=3.46649;SAP=5.02442;AB=0.623418;ABP=44.818;RUN=1;RPP=3.04177;RPPR=4.48836;RPL=139.0;RPR=137.0;EPP=3.79707;EPPR=3.46649;DPRA=0.0;ODDS=50.2505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992754;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.429;Dels=0.0;FS=0.2115;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.406;QD=25.475;ReadPosRankSum=-0.858;SOR=0.7275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:2960:-266.509,-21.3976,0.0:78:100:78:0,77:3238,231,0:1:.:1:.:.:.:-0.00174608	0/1:129.501:315:119:4498:197:7660:-603.772,0.0,-318.969:196:62:315:119,196:7598,0,4085:.:1:1:.:.:.:-0.0116954
chr2	140992337	.	C	A	2018.5	PASS	SOMATIC;NS=2;DP=277;DPB=277.0;AC=1;AN=3;AF=0.25;RO=197;AO=80;PRO=0.0;PAO=0.0;QR=7601;QA=3010;PQR=0.0;PQA=0.0;SRF=136;SRR=61;SAF=58;SAR=22;SRP=65.013;SAP=38.1882;AB=0.377358;ABP=30.7068;RUN=1;RPP=30.8051;RPPR=15.014;RPL=24.0;RPR=56.0;EPP=3.44459;EPPR=29.4758;DPRA=3.26154;ODDS=41.5644;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994924;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.02;Dels=0.0;FS=2.677;HaplotypeScore=35.9153;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.281;QD=12.74;ReadPosRankSum=-2.595;SOR=0.945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:62:65:2477:0:0:0.0,-17.6252,-223.096:0:0:62:60,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:212:132:5124:80:3010:-213.341,0.0,-403.539:80:38:212:128,78:37.0:0.38:2:2729,0,5122:.:1:1:.:.:1:-0.0116954
chr2	140992340	.	A	T	3513.64	REJECT	NS=2;DP=256;DPB=291.0;AC=2;AN=4;AF=0.5;RO=162;AO=129;PRO=0.0;PAO=0.0;QR=6168;QA=4917;PQR=0.0;PQA=0.0;SRF=111;SRR=51;SAF=91;SAR=38;SRP=51.2652;SAP=50.2945;AB=0.443299;ABP=11.1365;RUN=1;RPP=9.08706;RPPR=36.5207;RPL=55.0;RPR=74.0;EPP=13.531;EPPR=10.7311;DPRA=0.0;ODDS=167.639;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992248;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.851;Dels=0.0;FS=2.678;HaplotypeScore=35.9153;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.8065;QD=14.925;ReadPosRankSum=1.8895;SOR=1.0195;ClippingRankSum=-1.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.246:68:41:1566:28:1046:-75.5035,0.0,-122.326:27:40:68:40,27:928,0,1263:1:.:1:.:.:.:-0.00174608	0/1:119.246:222:121:4602:101:3871:-288.112,0.0,-353.862:101:45:222:121,101:3673,0,4479:.:1:1:.:.:.:-0.0116954
chr2	141032088	.	C	T	10866.4	REJECT	NS=2;DP=407;DPB=466.0;AC=2;AN=4;AF=0.5;RO=109;AO=357;PRO=0.0;PAO=0.0;QR=4172;QA=13625;PQR=0.0;PQA=0.0;SRF=51;SRR=58;SAF=179;SAR=178;SRP=3.98647;SAP=3.01638;AB=0.766094;ABP=289.607;RUN=1;RPP=10.4614;RPPR=3.50834;RPL=196.0;RPR=161.0;EPP=57.9054;EPPR=17.5333;DPRA=0.0;ODDS=159.854;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.958;MQMR=60.0;PAIRED=0.994398;PAIREDR=0.981651;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9065;Dels=0.0;FS=0.9695;HaplotypeScore=6.8631;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.17;QD=25.27;ReadPosRankSum=0.072;SOR=0.649;ClippingRankSum=0.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.2055:116:62:2339:55:2127:-159.751,0.0,-178.789:55:47:116:60,55:1996,0,2016:1:.:1:.:.:.:-0.00174608	0/1:118.2055:349:47:1833:302:11498:-939.605,0.0,-70.4061:302:87:349:47,302:11749,0,1034:.:1:1:.:.:.:-0.0116954
chr2	141110677	.	C	A	3901.2	REJECT	NS=2;DP=236;DPB=270.0;AC=2;AN=4;AF=0.5;RO=129;AO=141;PRO=0.0;PAO=0.0;QR=4693;QA=5352;PQR=0.0;PQA=0.0;SRF=41;SRR=88;SAF=51;SAR=90;SRP=40.1947;SAP=26.4345;AB=0.522222;ABP=4.16842;RUN=1;RPP=99.1249;RPPR=124.63;RPL=110.0;RPR=31.0;EPP=4.25774;EPPR=3.83512;DPRA=0.0;ODDS=202.357;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992908;PAIREDR=0.992248;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4995;Dels=0.0;FS=1.4305;HaplotypeScore=4.8065;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.679;QD=18.315;ReadPosRankSum=0.7325;SOR=0.521;ClippingRankSum=-1.263	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:65:35:1283:32:1206:-90.4733,0.0,-97.3919:31:48:65:33,31:1127,0,1100:1:.:1:.:.:.:-0.00174608	0/1:129.501:203:94:3410:109:4146:-318.058,0.0,-251.826:109:54:203:94,109:4034,0,3165:.:1:1:.:.:.:-0.0116954
chr2	141116447	.	G	T	1722.455	REJECT	NS=2;DP=367;DPB=420.0;AC=2;AN=4;AF=0.5;RO=324;AO=94;PRO=0.0;PAO=0.0;QR=12267;QA=3597;PQR=0.0;PQA=0.0;SRF=142;SRR=182;SAF=48;SAR=46;SRP=13.7336;SAP=3.1027;AB=0.22381;ABP=281.29;RUN=1;RPP=3.37991;RPPR=3.03711;RPL=49.0;RPR=45.0;EPP=16.3163;EPPR=12.6881;DPRA=0.0;ODDS=202.184;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996914;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.211;Dels=0.0;FS=3.8185;HaplotypeScore=3.9647;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.217;QD=8.91;ReadPosRankSum=0.092;SOR=0.5325;ClippingRankSum=0.506	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.262:102:60:2275:44:1662:-121.407,0.0,-176.597:43:42:102:58,42:1438,0,2025:1:.:1:.:.:.:-0.00174608	0/1:119.262:315:264:9992:50:1935:-89.0426,0.0,-813.716:50:16:314:264,50:1243,0,10223:.:1:1:.:.:.:-0.0116954
chr2	141130695	.	C	T	4190.79	REJECT	NS=2;DP=320;DPB=365.0;AC=2;AN=4;AF=0.5;RO=209;AO=155;PRO=0.0;PAO=0.0;QR=7757;QA=5880;PQR=0.0;PQA=0.0;SRF=65;SRR=144;SAF=48;SAR=107;SRP=67.8532;SAP=51.7774;AB=0.424658;ABP=21.0067;RUN=1;RPP=8.06773;RPPR=8.50651;RPL=87.0;RPR=68.0;EPP=3.36054;EPPR=3.10381;DPRA=0.0;ODDS=207.847;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987097;PAIREDR=0.990431;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.166;Dels=0.0;FS=1.759;HaplotypeScore=11.5894;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8205;QD=14.065;ReadPosRankSum=2.1315;SOR=0.899;ClippingRankSum=1.605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:55:2005:34:1297:-92.6557,0.0,-156.404:33:38:88:54,33:1143,0,1818:1:.:1:.:.:.:-0.00174608	0/1:129.501:275:154:5752:121:4583:-337.813,0.0,-442.951:120:44:274:154,120:4279,0,5548:.:1:1:.:.:.:-0.0116954
chr2	141135863	.	T	TA	2586.77	REJECT	NS=2;DP=229;DPB=275.417;AC=2;AN=4;AF=0.5;RO=140;AO=106;PRO=15.5;PAO=16.5;QR=5326;QA=4052;PQR=568.0;PQA=608.0;SRF=28;SRR=112;SAF=25;SAR=81;SRP=112.453;SAP=67.2531;AB=0.424;ABP=15.5527;RUN=1;RPP=16.8586;RPPR=23.1119;RPL=66.0;RPR=40.0;EPP=3.0103;EPPR=3.25847;DPRA=0.0;ODDS=144.543;GTI=0;TYPE=ins;CIGAR=1M1I11M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992857;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.122;FS=3.686;MLEAC=1;MLEAF=0.5;MQ=60.025;MQRankSum=-0.066;QD=9.33;RPA=7,8;RU=A;ReadPosRankSum=-0.971;SOR=0.603;STR;ClippingRankSum=0.405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.8:66:38:1436:24:927:-66.395,0.0,-114.949:26:40:65:40,28:629,0,998:1:.:1:.:.:.:-0.00174608	0/1:120.8:197:102:3890:82:3125:-242.9,0.0,-305.436:85:45:188:104,88:2255,0,2926:.:1:1:.:.:.:-0.0116954
chr2	141260668	.	A	G	2542.32	PASS	SOMATIC;NS=2;DP=387;DPB=387.0;AC=1;AN=3;AF=0.25;RO=287;AO=100;PRO=0.0;PAO=0.0;QR=11112;QA=3829;PQR=0.0;PQA=0.0;SRF=92;SRR=195;SAF=34;SAR=66;SRP=83.2791;SAP=25.2462;AB=0.330033;ABP=79.0405;RUN=1;RPP=4.40004;RPPR=19.7238;RPL=54.0;RPR=46.0;EPP=8.56927;EPPR=3.62315;DPRA=3.60714;ODDS=53.3961;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98;PAIREDR=0.989547;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.084;Dels=0.0;FS=0.473;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.863;QD=11.11;ReadPosRankSum=0.3;SOR=0.636	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.349:81:84:3232:0:0:0.0,-22.7637,-290.97:0:0:81:78,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:119.6745:301:203:7880:100:3829:-262.335,0.0,-626.68:99:33:301:191,95:38.0:0.338:2:3372,0,7863:.:1:1:.:.:1:-0.0116954
chr2	141267573	.	G	A	1047.97	REJECT	NS=1;DP=94;DPB=94.0;AC=1;AN=4;AF=0.5;RO=55;AO=39;PRO=0.0;PAO=0.0;QR=2101;QA=1534;PQR=0.0;PQA=0.0;SRF=26;SRR=29;SAF=13;SAR=26;SRP=3.36563;SAP=12.42;AB=0.414894;ABP=8.9241;RUN=1;RPP=12.42;RPPR=9.68264;RPL=13.0;RPR=26.0;EPP=15.538;EPPR=6.20829;DPRA=0.0;ODDS=241.305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974359;PAIREDR=0.981818;technology.ILLUMINA=1.0;BaseQRankSum=2.172;FS=6.851;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.015;QD=13.78;ReadPosRankSum=1.688;SOR=1.389;ClippingRankSum=-0.583	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.965:94:55:2101:39:1534:-112.606,0.0,-163.645:39:41:94:55,39:1324,0,1907:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0116954
chr2	141272360	.	G	GA	322.813	REJECT	NS=2;DP=184;DPB=204.471;AC=2;AN=2;AF=0.0;RO=141;AO=10;PRO=25.0;PAO=14.0;QR=5351;QA=352;PQR=904.333;PQA=498.333;SRF=27;SRR=114;SAF=2;SAR=8;SRP=119.577;SAP=10.8276;AB=0.0543478;ABP=320.423;RUN=1;RPP=24.725;RPPR=119.577;RPL=10.0;RPR=0.0;EPP=10.8276;EPPR=28.8986;DPRA=0.0;ODDS=20.993;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992908;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:91.1712:45:34:1286:2:48:-9.76865,-16.0245,-131.5:2:5:42:.:.:1:.:.:.:-0.00174608	./1:160.002:139:107:4065:8:304:-30.2677,-36.2485,-395.086:8:6:134:.:.:1:.:.:.:-0.0116954
chr2	141272360	.	GA	G	322.813	REJECT	NS=2;DP=184;DPB=204.471;AC=2;AN=4;AF=0.5;RO=141;AO=25;PRO=25.0;PAO=15.0;QR=5351;QA=947;PQR=904.333;PQA=532.333;SRF=27;SRR=114;SAF=7;SAR=18;SRP=119.577;SAP=13.5202;AB=0.13587;ABP=214.918;RUN=1;RPP=22.5536;RPPR=119.577;RPL=20.0;RPR=5.0;EPP=3.09716;EPPR=28.8986;DPRA=0.0;ODDS=20.993;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992908;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:91.1712:45:34:1286:6:238:-9.76865,0.0,-114.375:6:14:42:.:.:1:.:.:.:-0.00174608	0/1:160.002:139:107:4065:19:709:-30.2677,0.0,-355.595:19:14:134:.:.:1:.:.:.:-0.0116954
chr2	141274576	.	T	C	10996.2	REJECT	NS=2;DP=292;DPB=330.0;AC=4;AN=4;AF=1.0;RO=1;AO=329;PRO=0.0;PAO=0.0;QR=39;QA=12667;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=91;SAR=238;SRP=5.18177;SAP=145.634;AB=0.0;ABP=0.0;RUN=1;RPP=22.976;RPPR=5.18177;RPL=192.0;RPR=137.0;EPP=11.0956;EPPR=5.18177;DPRA=0.0;ODDS=51.1409;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993921;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.232;Dels=0.0;FS=2.7985;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.214;QD=32.76;ReadPosRankSum=0.409;SOR=1.964	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.6315:74:0:0:75:2909:-261.93,-20.3351,0.0:74:100:74:0,74:3116,222,0:1:.:1:.:.:.:-0.00174608	1/1:123.6315:254:1:39:254:9758:-874.238,-65.5609,0.0:253:100:254:1,253:10866,715,0:.:1:1:.:.:.:-0.0116954
chr2	141294285	.	G	A	238.486	REJECT	NS=2;DP=187;DPB=219.5;AC=2;AN=2;AF=0.0;RO=114;AO=10;PRO=33.5;PAO=1.0;QR=4197;QA=184;PQR=1148.17;PQA=14.0;SRF=14;SRR=100;SAF=0;SAR=10;SRP=143.889;SAP=24.725;AB=0.0534759;ABP=326.862;RUN=1;RPP=3.87889;RPPR=5.75321;RPL=4.0;RPR=6.0;EPP=3.87889;EPPR=5.75321;DPRA=0.0;ODDS=23.1129;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=59.8246;PAIRED=1.0;PAIREDR=0.991228;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:100.19:37:20:755:4:81:-11.7822,-21.84,-190.33:4:11:35:.:.:1:.:.:.:-0.00174608	./1:129.369:150:94:3442:6:103:-20.93,-84.3271,-848.157:6:5:133:.:.:1:.:.:.:-0.0116954
chr2	141294285	.	G	GA	238.486	REJECT	NS=2;DP=187;DPB=219.5;AC=2;AN=2;AF=0.0;RO=114;AO=16;PRO=33.5;PAO=25.5;QR=4197;QA=343;PQR=1148.17;PQA=865.167;SRF=14;SRR=100;SAF=0;SAR=16;SRP=143.889;SAP=37.7539;AB=0.0855615;ABP=281.992;RUN=1;RPP=3.0103;RPPR=5.75321;RPL=8.0;RPR=8.0;EPP=3.0103;EPPR=5.75321;DPRA=0.0;ODDS=23.1129;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=59.8246;PAIRED=1.0;PAIREDR=0.991228;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:100.19:37:20:755:4:109:-11.7822,-8.74264,-73.0956:4:11:35:.:.:1:.:.:.:-0.00174608	./1:129.369:150:94:3442:12:234:-20.93,-27.8713,-332.093:12:9:133:.:.:1:.:.:.:-0.0116954
chr2	141294285	.	GA	G	238.486	REJECT	NS=2;DP=187;DPB=219.5;AC=2;AN=4;AF=0.5;RO=114;AO=28;PRO=33.5;PAO=23.0;QR=4197;QA=812;PQR=1148.17;PQA=760.667;SRF=14;SRR=100;SAF=4;SAR=24;SRP=143.889;SAP=34.0313;AB=0.149733;ABP=202.286;RUN=1;RPP=3.32051;RPPR=5.75321;RPL=13.0;RPR=15.0;EPP=10.7656;EPPR=5.75321;DPRA=0.0;ODDS=23.1129;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=59.8246;PAIRED=1.0;PAIREDR=0.991228;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:100.19:37:20:755:7:215:-11.7822,0.0,-63.5445:7:20:35:.:.:1:.:.:.:-0.00174608	0/1:129.369:150:94:3442:21:597:-20.93,0.0,-342.164:21:16:133:.:.:1:.:.:.:-0.0116954
chr2	141474402	.	G	GA	951.426	REJECT	NS=2;DP=193;DPB=224.062;AC=2;AN=4;AF=0.5;RO=146;AO=46;PRO=33.5;PAO=20.5;QR=5568;QA=1702;PQR=1208.0;PQA=732.0;SRF=23;SRR=123;SAF=5;SAR=41;SRP=151.741;SAP=64.1892;AB=0.238342;ABP=117.783;RUN=1;RPP=30.2009;RPPR=75.8885;RPL=35.0;RPR=11.0;EPP=18.305;EPPR=14.6708;DPRA=0.0;ODDS=90.7923;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993151;technology.ILLUMINA=1.0;BaseQRankSum=-0.631;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.612;QD=9.08;ReadPosRankSum=0.204;SOR=1.179;ClippingRankSum=0.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.908:47:23:889:21:803:-65.7181,0.0,-76.2624:22:48:47:26,24:546,0,631:1:.:1:.:.:.:-0.00174608	0/1:136.816:149:123:4679:25:899:-45.6255,0.0,-425.818:25:17:148:.:.:.:.:1:.:.:.:-0.0116954
chr2	141528592	.	T	C	8050.91	REJECT	NS=2;DP=226;DPB=264.0;AC=4;AN=4;AF=1.0;RO=2;AO=262;PRO=0.0;PAO=0.0;QR=56;QA=9814;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=47;SAR=215;SRP=7.35324;SAP=236.933;AB=0.0;ABP=0.0;RUN=1;RPP=118.413;RPPR=7.35324;RPL=190.0;RPR=72.0;EPP=13.7516;EPPR=7.35324;DPRA=0.0;ODDS=51.6679;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.803;Dels=0.0;FS=0.0;HaplotypeScore=7.8319;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.679;QD=32.075;ReadPosRankSum=-0.79;SOR=2.293	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:75:0:0:76:2815:-253.448,-20.564,0.0:75:100:75:0,74:3035,222,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:188:2:56:186:6999:-624.587,-45.8183,0.0:186:99:188:2,186:7753,500,0:.:1:1:.:.:.:-0.0116954
chr2	141533646	.	A	T	1904.99	PASS	SOMATIC;NS=2;DP=282;DPB=282.0;AC=1;AN=3;AF=0.25;RO=205;AO=76;PRO=0.0;PAO=0.0;QR=7844;QA=2907;PQR=0.0;PQA=0.0;SRF=148;SRR=57;SAF=59;SAR=17;SRP=90.7272;SAP=53.4113;AB=0.347032;ABP=47.5205;RUN=1;RPP=16.8392;RPPR=62.5934;RPL=27.0;RPR=49.0;EPP=3.46745;EPPR=3.02089;DPRA=3.47619;ODDS=39.6499;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986842;PAIREDR=0.985366;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.686;Dels=0.0;FS=2.878;HaplotypeScore=6.79;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.366;QD=11.84;ReadPosRankSum=1.849;SOR=0.972	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:62:62:2333:0:0:0.0,-16.7937,-210.121:0:0:61:61,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:218:143:5511:76:2907:-202.179,0.0,-436.445:76:35:218:140,72:38.0:0.333:2:2610,0,5478:.:1:1:.:.:1:-0.0116954
chr2	141533662	.	T	C	11279.7	REJECT	NS=2;DP=299;DPB=341.0;AC=4;AN=4;AF=1.0;RO=0;AO=341;PRO=0.0;PAO=0.0;QR=0;QA=13045;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=239;SAR=102;SRP=0.0;SAP=122.53;AB=0.0;ABP=0.0;RUN=1;RPP=22.2734;RPPR=0.0;RPL=143.0;RPR=198.0;EPP=29.9149;EPPR=0.0;DPRA=0.0;ODDS=55.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.98827;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.315;SOR=1.8445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:80:0:0:82:3093:-278.463,-22.2105,0.0:80:100:80:0,79:3224,236,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:258:0:0:259:9952:-895.174,-70.1429,0.0:258:100:258:0,258:11061,765,0:.:1:1:.:.:.:-0.0116954
chr2	141571329	.	T	C	7861.1	REJECT	NS=2;DP=355;DPB=409.0;AC=3;AN=4;AF=0.75;RO=120;AO=289;PRO=0.0;PAO=0.0;QR=4591;QA=10987;PQR=0.0;PQA=0.0;SRF=47;SRR=73;SAF=127;SAR=162;SRP=15.2429;SAP=12.2146;AB=0.602649;ABP=30.6498;RUN=1;RPP=9.32936;RPPR=4.16842;RPL=159.0;RPR=130.0;EPP=13.2966;EPPR=6.55704;DPRA=0.0;ODDS=67.7077;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.157;Dels=0.0;FS=0.4595;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.199;QD=26.925;ReadPosRankSum=-0.097;SOR=0.669	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:107:4053:-364.785,-28.9791,0.0:105:100:105:0,104:4247,312,0:1:.:1:.:.:.:-0.00174608	0/1:129.501:301:120:4591:182:6934:-541.898,0.0,-331.189:181:60:301:120,181:6768,0,4255:.:1:1:.:.:.:-0.0116954
chr2	141598473	.	A	AT	9208.63	REJECT	NS=2;DP=243;DPB=346.0;AC=4;AN=4;AF=1.0;RO=0;AO=275;PRO=6.0;PAO=13.0;QR=0;QA=10300;PQR=161.0;PQA=394.0;SRF=0;SRR=0;SAF=196;SAR=79;SRP=0.0;SAP=111.102;AB=0.0;ABP=0.0;RUN=1;RPP=118.619;RPPR=0.0;RPL=77.0;RPR=198.0;EPP=3.0182;EPPR=0.0;DPRA=0.0;ODDS=46.1454;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=61.2364;MQMR=0.0;PAIRED=0.989091;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=141598473;HOMLEN=0;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=61.38;QD=31.72;SOR=1.9815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.722:65:0:0:66:2490:-227.788,-18.1656,0.0:66:100:66:21,84:2610,198,0:1:.:1:1:.:.:-0.00174608	1/1:120.722:210:0:0:209:7810:-720.068,-58.1818,0.0:210:100:210:69,268:9326,632,0:.:1:1:1:.:.:-0.0116954
chr2	141625410	.	A	C	3207.7200000000003	REJECT	NS=2;DP=228;DPB=270.0;AC=2;AN=4;AF=0.5;RO=147;AO=123;PRO=0.0;PAO=0.0;QR=5639;QA=4739;PQR=0.0;PQA=0.0;SRF=38;SRR=109;SAF=34;SAR=89;SRP=77.4756;SAP=56.4144;AB=0.455556;ABP=7.64277;RUN=1;RPP=17.8575;RPPR=7.27939;RPL=76.0;RPR=47.0;EPP=3.16919;EPPR=8.34296;DPRA=0.0;ODDS=257.725;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98374;PAIREDR=0.965986;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.127;Dels=0.0;FS=3.895;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6965;QD=15.925;ReadPosRankSum=0.651;SOR=0.544;ClippingRankSum=1.367	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.294:82:44:1688:39:1509:-113.364,0.0,-129.47:38:47:82:43,38:1329,0,1533:1:.:1:.:.:.:-0.00174608	0/1:122.294:186:103:3951:84:3230:-239.924,0.0,-304.805:84:45:186:102,84:3038,0,3827:.:1:1:.:.:.:-0.0116954
chr2	141625828	.	G	A	8.39687	REJECT	NS=2;DP=272;DPB=272.0;AC=2;AN=4;AF=0.5;RO=207;AO=65;PRO=0.0;PAO=0.0;QR=6352;QA=1113;PQR=0.0;PQA=0.0;SRF=44;SRR=163;SAF=0;SAR=65;SRP=151.562;SAP=144.156;AB=0.238971;ABP=163.987;RUN=1;RPP=17.7429;RPPR=177.578;RPL=22.0;RPR=43.0;EPP=17.7429;EPPR=47.3314;DPRA=0.0;ODDS=0.743295;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.8462;MQMR=59.942;PAIRED=1.0;PAIREDR=0.990338;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3.76616:62:48:1498:14:253:-6.11444,0.0,-118.247:14:23:62:.:.:1:.:.:.:-0.00174608	0/1:8.37973:210:159:4854:51:860:-21.3212,0.0,-380.402:51:24:210:.:.:1:.:.:.:-0.0116954
chr2	141625834	.	TAA	T	192.73	PASS	SOMATIC;DP=180;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.521;FS=9.426;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.521;QD=1.07;RPA=19,17;RU=A;ReadPosRankSum=-0.503;SOR=0.061;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:68,19:180:99.0:230,0,1418:19:22:87:.:1:.:.:.:.:-0.0116954
chr2	141709419	.	T	G	1556.355	REJECT	NS=2;DP=286;DPB=331.0;AC=2;AN=4;AF=0.5;RO=249;AO=82;PRO=0.0;PAO=0.0;QR=9710;QA=3187;PQR=0.0;PQA=0.0;SRF=148;SRR=101;SAF=51;SAR=31;SRP=22.2745;SAP=13.6028;AB=0.247734;ABP=185.972;RUN=1;RPP=15.8273;RPPR=46.9717;RPL=30.0;RPR=52.0;EPP=4.70511;EPPR=7.62359;DPRA=0.0;ODDS=218.547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.97561;PAIREDR=0.983936;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.063;Dels=0.0;FS=1.9965;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.924;QD=9.495;ReadPosRankSum=0.8165;SOR=0.6835;ClippingRankSum=1.003	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8705:84:50:1888:36:1387:-101.949,0.0,-146.651:35:42:84:47,35:1201,0,1660:1:.:1:.:.:.:-0.00174608	0/1:118.8705:243:199:7822:46:1800:-95.5215,0.0,-637.199:45:19:243:197,45:1246,0,7953:.:1:1:.:.:.:-0.0116954
chr2	141747249	.	A	T	5368.19	REJECT	NS=2;DP=202;DPB=233.0;AC=2;AN=4;AF=0.5;RO=51;AO=182;PRO=0.0;PAO=0.0;QR=1940;QA=6926;PQR=0.0;PQA=0.0;SRF=9;SRR=42;SAF=45;SAR=137;SRP=49.3776;SAP=103.996;AB=0.781116;ABP=162.944;RUN=1;RPP=68.3454;RPPR=34.0496;RPL=128.0;RPR=54.0;EPP=4.72839;EPPR=10.206;DPRA=0.0;ODDS=114.138;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994505;PAIREDR=0.960784;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3245;Dels=0.0;FS=4.895;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2685;QD=27.29;ReadPosRankSum=-0.132;SOR=0.466;ClippingRankSum=-0.246	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.7245:61:23:873:39:1449:-113.712,0.0,-61.8287:38:62:61:23,38:1359,0,789:1:.:1:.:.:.:-0.00174608	0/1:120.7245:171:28:1067:143:5477:-446.469,0.0,-49.6662:143:84:171:28,143:5630,0,671:.:1:1:.:.:.:-0.0116954
chr2	141751592	.	G	A	9535.95	REJECT	NS=2;DP=348;DPB=399.0;AC=2;AN=4;AF=0.5;RO=90;AO=307;PRO=0.0;PAO=0.0;QR=3446;QA=11905;PQR=0.0;PQA=0.0;SRF=57;SRR=33;SAF=183;SAR=124;SRP=16.9077;SAP=27.6321;AB=0.769424;ABP=254.58;RUN=1;RPP=6.12958;RPPR=3.10681;RPL=143.0;RPR=164.0;EPP=9.80765;EPPR=6.48466;DPRA=0.0;ODDS=121.512;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996743;PAIREDR=0.988889;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1925;Dels=0.0;FS=1.7215;HaplotypeScore=6.9965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.09;QD=25.36;ReadPosRankSum=0.4785;SOR=0.6125;ClippingRankSum=0.605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8125:97:50:1959:49:1862:-140.773,0.0,-149.498:48:49:96:47,47:1581,0,1710:1:.:1:.:.:.:-0.00174608	0/1:119.8125:298:40:1487:258:10043:-822.609,0.0,-53.0211:258:87:298:40,258:10373,0,749:.:1:1:.:.:.:-0.0116954
chr2	141816621	.	A	G	9469.545	REJECT	NS=2;DP=252;DPB=289.0;AC=4;AN=4;AF=1.0;RO=0;AO=288;PRO=0.0;PAO=0.0;QR=0;QA=11079;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=77;SAR=211;SRP=0.0;SAP=138.396;AB=0.0;ABP=0.0;RUN=1;RPP=64.083;RPPR=0.0;RPL=189.0;RPR=99.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=50.4708;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996528;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9315;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.175;SOR=2.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.9515:71:0:0:74:2793:-251.485,-20.0441,0.0:71:100:71:0,69:2713,206,0:1:.:1:.:.:.:-0.00174608	1/1:121.9515:215:0:0:214:8286:-745.375,-57.9659,0.0:214:100:214:0,214:9245,635,0:.:1:1:.:.:.:-0.0116954
chr2	142567860	.	A	T	2475.14	PASS	SOMATIC;NS=2;DP=363;DPB=363.0;AC=1;AN=3;AF=0.25;RO=268;AO=95;PRO=0.0;PAO=0.0;QR=10227;QA=3631;PQR=0.0;PQA=0.0;SRF=176;SRR=92;SAF=65;SAR=30;SRP=60.1816;SAP=31.0109;AB=0.363985;ABP=44.9505;RUN=1;RPP=11.2619;RPPR=28.4198;RPL=38.0;RPR=57.0;EPP=3.21602;EPPR=4.17706;DPRA=2.55882;ODDS=64.6338;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992537;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.452;Dels=0.0;FS=2.312;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.299;QD=12.59;ReadPosRankSum=-0.195;SOR=0.866	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.792:101:102:3901:0:0:0.0,-27.6442,-351.14:0:0:101:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:119.396:260:166:6326:95:3631:-256.331,0.0,-498.333:95:37:260:162,93:38.0:0.367:2:3301,0,6238:.:1:1:.:.:1:-0.0116954
chr2	142567910	.	T	C	9981.26	REJECT	NS=2;DP=382;DPB=437.0;AC=2;AN=4;AF=0.5;RO=110;AO=327;PRO=0.0;PAO=0.0;QR=4201;QA=12569;PQR=0.0;PQA=0.0;SRF=50;SRR=60;SAF=153;SAR=174;SRP=4.98437;SAP=5.9388;AB=0.748284;ABP=236.998;RUN=1;RPP=3.17631;RPPR=3.32615;RPL=166.0;RPR=161.0;EPP=76.2228;EPPR=28.5942;DPRA=0.0;ODDS=169.153;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996942;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.146;Dels=0.0;FS=4.259;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.015;QD=23.975;ReadPosRankSum=0.94;SOR=0.6;ClippingRankSum=0.554	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:63:2371:45:1702:-123.944,0.0,-184.518:44:41:106:61,43:1509,0,2093:1:.:1:.:.:.:-0.00174608	0/1:129.501:328:47:1830:282:10867:-888.287,0.0,-75.4906:281:86:328:47,281:11132,0,1076:.:1:1:.:.:.:-0.0116954
chr2	142888376	.	G	C	2104.84	PASS	SOMATIC;NS=2;DP=310;DPB=310.0;AC=1;AN=3;AF=0.25;RO=224;AO=86;PRO=0.0;PAO=0.0;QR=8498;QA=3200;PQR=0.0;PQA=0.0;SRF=41;SRR=183;SAF=13;SAR=73;SRP=198.482;SAP=93.9091;AB=0.375546;ABP=33.8187;RUN=1;RPP=4.62628;RPPR=21.778;RPL=47.0;RPR=39.0;EPP=5.53527;EPPR=9.56349;DPRA=2.82716;ODDS=51.5236;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9535;MQMR=60.0;PAIRED=0.988372;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.299;Dels=0.0;FS=2.291;HaplotypeScore=5.8461;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.885;QD=12.51;ReadPosRankSum=0.118;SOR=0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:81:81:3048:0:0:0.0,-21.9504,-274.433:0:0:81:81,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:229:143:5450:86:3200:-225.851,0.0,-428.655:86:38:229:139,84:37.0:0.379:2:2892,0,5419:.:1:1:.:.:1:-0.0116954
chr2	148512364	.	G	A	11377.0	REJECT	NS=2;DP=308;DPB=360.0;AC=4;AN=4;AF=1.0;RO=0;AO=360;PRO=0.0;PAO=0.0;QR=0;QA=13553;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=90;SAR=270;SRP=0.0;SAP=198.443;AB=0.0;ABP=0.0;RUN=1;RPP=9.98314;RPPR=0.0;RPL=197.0;RPR=163.0;EPP=60.9404;EPPR=0.0;DPRA=0.0;ODDS=68.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997222;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8994;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.97;SOR=2.12	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:103:3758:-338.223,-27.8563,0.0:101:100:101:0,100:3859,299,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:257:0:0:257:9795:-881.06,-69.5794,0.0:257:100:257:0,257:10900,756,0:.:1:1:.:.:.:-0.0116954
chr2	158626980	.	C	T	12775.599999999999	REJECT	NS=2;DP=339;DPB=388.0;AC=4;AN=4;AF=1.0;RO=0;AO=388;PRO=0.0;PAO=0.0;QR=0;QA=14793;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=231;SRP=0.0;SAP=33.6572;AB=0.0;ABP=0.0;RUN=1;RPP=24.5235;RPPR=0.0;RPL=225.0;RPR=163.0;EPP=11.9648;EPPR=0.0;DPRA=0.0;ODDS=64.8544;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994845;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9108;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.695;SOR=1.134	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:97:3707:-333.699,-26.2908,0.0:95:100:95:0,94:3706,282,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:291:0:0:291:11086:-997.141,-78.7871,0.0:291:100:291:0,291:12374,861,0:.:1:1:.:.:.:-0.0116954
chr2	158636910	.	G	A	5155.950000000001	REJECT	NS=2;DP=322;DPB=373.0;AC=2;AN=4;AF=0.5;RO=186;AO=186;PRO=0.0;PAO=0.0;QR=6955;QA=7056;PQR=0.0;PQA=0.0;SRF=98;SRR=88;SAF=100;SAR=86;SRP=4.17776;SAP=5.29852;AB=0.49866;ABP=3.01612;RUN=1;RPP=4.17776;RPPR=5.29852;RPL=98.0;RPR=88.0;EPP=3.43058;EPPR=5.29852;DPRA=0.0;ODDS=308.052;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994624;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4175;Dels=0.0;FS=4.597;HaplotypeScore=5.8212;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.821;QD=17.375;ReadPosRankSum=0.3065;SOR=0.6655;ClippingRankSum=1.081	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:53:1998:48:1795:-134.234,0.0,-152.481:47:48:99:51,47:1629,0,1835:1:.:1:.:.:.:-0.00174608	0/1:129.501:271:133:4957:138:5261:-399.867,0.0,-372.524:138:51:271:133,138:5063,0,4716:.:1:1:.:.:.:-0.0116954
chr2	158637136	.	G	GA	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=2;AF=0.0;RO=28;AO=6;PRO=23.4762;PAO=15.4762;QR=1040;QA=153;PQR=826.762;PQA=480.762;SRF=4;SRR=24;SAF=0;SAR=6;SRP=34.0313;SAP=16.0391;AB=0.0526316;ABP=201.186;RUN=1;RPP=8.80089;RPPR=34.0313;RPL=5.0;RPR=1.0;EPP=8.80089;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=6;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.016:36:6:224:1:27:-104.103,-100.867,-122.035:1:3:33:.:.:1:.:.:.:-0.00174608	./1:160.002:78:22:816:5:126:-339.096,-334.988,-432.586:5:7:69:.:.:1:.:.:.:-0.0116954
chr2	158637136	.	G	GGA	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=2;AF=0.0;RO=28;AO=3;PRO=23.4762;PAO=11.9762;QR=1040;QA=92;PQR=826.762;PQA=360.012;SRF=4;SRR=24;SAF=1;SAR=2;SRP=34.0313;SAP=3.73412;AB=0.0263158;ABP=225.186;RUN=1;RPP=3.73412;RPPR=34.0313;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=6;MEANALT=11.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.016:36:6:224:2:56:-104.103,-50.7147,-123.536:2:6:33:.:.:1:.:.:.:-0.00174608	./1:160.002:78:22:816:1:36:-339.096,-93.6523,-361.751:1:1:69:.:.:1:.:.:.:-0.0116954
chr2	158637136	.	GA	G	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=2;AF=0.0;RO=28;AO=12;PRO=23.4762;PAO=12.4762;QR=1040;QA=420;PQR=826.762;PQA=437.762;SRF=4;SRR=24;SAF=3;SAR=9;SRP=34.0313;SAP=9.52472;AB=0.105263;ABP=157.299;RUN=1;RPP=14.5915;RPPR=34.0313;RPL=10.0;RPR=2.0;EPP=3.73412;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=6;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.903;FS=1.63;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.651;QD=1.07;ReadPosRankSum=-1.953;SOR=1.059;ClippingRankSum=0.861	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:114.008:38:6:224:1:34:-104.103,-100.689,-127.804:6:15:37:30,11:98,0,589:1:.:1:.:.:.:-0.00174608	./1:160.002:78:22:816:11:386:-339.096,-313.849,-416.238:11:16:69:.:.:.:.:1:.:.:.:-0.0116954
chr2	158637137	.	A	G	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=4;AF=0.5;RO=28;AO=41;PRO=23.4762;PAO=19.9762;QR=1040;QA=1541;PQR=826.762;PQA=653.012;SRF=4;SRR=24;SAF=14;SAR=27;SRP=34.0313;SAP=11.961;AB=0.359649;ABP=22.5155;RUN=1;RPP=11.961;RPPR=34.0313;RPL=27.0;RPR=14.0;EPP=5.60547;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=snp;CIGAR=1M1X23M;NUMALT=6;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:130.016:36:6:224:16:596:-104.103,0.0,-68.4701:16:48:33:.:.:1:.:.:.:-0.00174608	0/1:160.002:78:22:816:25:945:-339.096,0.0,-259.962:25:36:69:.:.:1:.:.:.:-0.0116954
chr2	158637137	.	AA	G	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=2;AF=0.0;RO=28;AO=10;PRO=23.4762;PAO=9.47619;QR=1040;QA=313;PQR=826.762;PQA=309.512;SRF=4;SRR=24;SAF=3;SAR=7;SRP=34.0313;SAP=6.48466;AB=0.0877193;ABP=171.318;RUN=1;RPP=10.8276;RPPR=34.0313;RPL=8.0;RPR=2.0;EPP=3.0103;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=complex;CIGAR=1M1D1X22M;NUMALT=6;MEANALT=11.0;LEN=24;MQM=60.0;MQMR=60.0;PAIRED=0.9;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.016:36:6:224:5:140:-104.103,-52.2429,-125.314:5:15:33:.:.:1:.:.:.:-0.00174608	./1:160.002:78:22:816:5:173:-339.096,-94.9978,-363.592:5:7:69:.:.:1:.:.:.:-0.0116954
chr2	158637137	.	AAAA	G	4361.46	REJECT	NS=2;DP=114;DPB=156.08;AC=2;AN=2;AF=0.0;RO=28;AO=2;PRO=23.4762;PAO=9.14286;QR=1040;QA=77;PQR=826.762;PQA=301.179;SRF=4;SRR=24;SAF=1;SAR=1;SRP=34.0313;SAP=3.0103;AB=0.0555556;ABP=64.7766;RUN=1;RPP=3.0103;RPPR=34.0313;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=14.1779;DPRA=0.0;ODDS=32.4483;GTI=0;TYPE=complex;CIGAR=1M3D1X20M;NUMALT=6;MEANALT=9.0;LEN=22;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.016:36:6:224:2:77:-104.103,-54.1369,-127.731:2:6:33:.:.:1:.:.:.:-0.00174608	./1:160.002:78:22:816:0:0:-339.096,-119.513,-390.546:0:0:69:.:.:1:.:.:.:-0.0116954
chr2	173427053	.	T	G	1780.4	REJECT	NS=2;DP=253;DPB=290.0;AC=2;AN=4;AF=0.5;RO=210;AO=80;PRO=0.0;PAO=0.0;QR=7972;QA=3112;PQR=0.0;PQA=0.0;SRF=74;SRR=136;SAF=34;SAR=46;SRP=42.7586;SAP=6.91895;AB=0.275862;ABP=129.555;RUN=1;RPP=11.8048;RPPR=90.531;RPL=49.0;RPR=31.0;EPP=21.3592;EPPR=3.67208;DPRA=0.0;ODDS=136.841;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9875;PAIREDR=0.980952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3965;Dels=0.0;FS=8.7945;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0195;QD=13.24;ReadPosRankSum=0.529;SOR=0.6575;ClippingRankSum=-0.229	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:26:986:46:1776:-140.412,0.0,-69.264:46:64:72:26,46:1659,0,879:1:.:1:.:.:.:-0.00174608	0/1:129.501:217:184:6986:34:1336:-61.1528,0.0,-569.4:34:16:217:183,34:860,0,7078:.:1:1:.:.:.:-0.0116954
chr2	173460640	.	T	C	1959.055	REJECT	NS=2;DP=394;DPB=446.0;AC=2;AN=4;AF=0.5;RO=347;AO=99;PRO=0.0;PAO=0.0;QR=13314;QA=3764;PQR=0.0;PQA=0.0;SRF=166;SRR=181;SAF=44;SAR=55;SRP=4.41832;SAP=5.66432;AB=0.221973;ABP=302.459;RUN=1;RPP=4.08507;RPPR=5.26938;RPL=53.0;RPR=46.0;EPP=6.71716;EPPR=18.0354;DPRA=0.0;ODDS=133.841;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994236;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.171;Dels=0.0;FS=2.558;HaplotypeScore=8.9098;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.069;QD=10.325;ReadPosRankSum=0.6715;SOR=0.943;ClippingRankSum=-1.835	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.465:100:46:1783:55:2077:-159.574,0.0,-133.133:54:54:100:46,53:1827,0,1629:1:.:1:.:.:.:-0.00174608	0/1:120.465:344:301:11531:44:1687:-58.6897,0.0,-943.669:44:13:344:299,44:879,0,11772:.:1:1:.:.:.:-0.0116954
chr2	177000391	.	G	A	7741.780000000001	REJECT	NS=2;DP=206;DPB=232.0;AC=4;AN=4;AF=1.0;RO=1;AO=230;PRO=0.0;PAO=0.0;QR=16;QA=8858;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=160;SAR=70;SRP=5.18177;SAP=79.4839;AB=0.0;ABP=0.0;RUN=1;RPP=101.236;RPPR=5.18177;RPL=64.0;RPR=166.0;EPP=6.06924;EPPR=5.18177;DPRA=0.0;ODDS=34.2824;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986957;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.835;SOR=1.8015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.5675:48:1:16:49:1855:-165.715,-12.1105,0.0:48:99:48:0,47:1930,141,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:181:0:0:181:7003:-630.049,-49.0465,0.0:180:100:180:0,179:7766,536,0:.:1:1:.:.:.:-0.0116954
chr2	178098087	.	CA	C	1370.57	REJECT	NS=2;DP=237;DPB=245.636;AC=2;AN=4;AF=0.5;RO=173;AO=62;PRO=23.0;PAO=10.0;QR=6535;QA=2299;PQR=806.0;PQA=358.0;SRF=41;SRR=132;SAF=13;SAR=49;SRP=106.952;SAP=48.4011;AB=0.261603;ABP=120.004;RUN=1;RPP=34.5317;RPPR=52.8286;RPL=46.0;RPR=16.0;EPP=5.25182;EPPR=6.63779;DPRA=0.0;ODDS=126.951;GTI=0;TYPE=del;CIGAR=1M1D9M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983871;PAIREDR=0.99422;technology.ILLUMINA=1.0;END=178098088;HOMLEN=2;HOMSEQ=AA;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-1.504;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-0.052;QD=14.42;ReadPosRankSum=-4.008;SOR=0.657;ClippingRankSum=-1.578	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:31,30:31:53:60:129.501:59:27:1005:31:1129:-91.1928,0.0,-80.404:960,0,815:1:.:1:1:.:.:-0.00174608	0/1:120,28:29:18:162:160.002:179:146:5530:31:1170:-59.3541,0.0,-491.63:.:.:.:1:1:.:.:-0.0116954
chr2	186010721	.	C	T	13574.8	REJECT	NS=2;DP=360;DPB=399.0;AC=4;AN=4;AF=1.0;RO=0;AO=399;PRO=0.0;PAO=0.0;QR=0;QA=15243;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=152;SAR=247;SRP=0.0;SAP=52.1269;AB=0.0;ABP=0.0;RUN=1;RPP=9.6771;RPPR=0.0;RPL=217.0;RPR=182.0;EPP=42.3308;EPPR=0.0;DPRA=0.0;ODDS=52.3434;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994987;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9323;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.375;SOR=1.5355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:75:0:0:77:2944:-265.055,-20.8574,0.0:75:100:75:0,73:3032,218,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:322:0:0:322:12299:-1106.19,-87.1758,0.0:322:100:322:0,322:13690,948,0:.:1:1:.:.:.:-0.0116954
chr2	187516446	.	A	G	4198.87	REJECT	NS=2;DP=245;DPB=278.0;AC=2;AN=4;AF=0.5;RO=130;AO=148;PRO=0.0;PAO=0.0;QR=5049;QA=5656;PQR=0.0;PQA=0.0;SRF=45;SRR=85;SAF=45;SAR=103;SRP=29.7361;SAP=52.3673;AB=0.532374;ABP=5.54108;RUN=1;RPP=26.4857;RPPR=18.0436;RPL=94.0;RPR=54.0;EPP=7.76406;EPPR=4.07933;DPRA=0.0;ODDS=207.725;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.97973;PAIREDR=0.984615;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.006;Dels=0.0;FS=5.013;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.622;QD=18.17;ReadPosRankSum=0.496;SOR=1.378;ClippingRankSum=0.141	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.032:64:32:1271:33:1227:-92.8815,0.0,-96.8483:32:50:64:32,32:1086,0,1112:1:.:1:.:.:.:-0.00174608	0/1:120.032:213:98:3778:115:4429:-340.727,0.0,-282.173:115:54:213:98,115:4304,0,3593:.:1:1:.:.:.:-0.0116954
chr2	189008267	.	A	C	14665.849999999999	REJECT	NS=2;DP=386;DPB=444.0;AC=4;AN=4;AF=1.0;RO=0;AO=444;PRO=0.0;PAO=0.0;QR=0;QA=17072;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=213;SAR=231;SRP=0.0;SAP=4.59489;AB=0.0;ABP=0.0;RUN=1;RPP=11.6375;RPPR=0.0;RPL=201.0;RPR=243.0;EPP=51.9173;EPPR=0.0;DPRA=0.0;ODDS=74.8145;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988739;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7989;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.575;SOR=0.7945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:113:4316:-388.437,-30.6165,0.0:109:100:109:0,106:4514,319,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:330:0:0:331:12756:-1147.26,-89.6165,0.0:330:100:330:0,329:14105,969,0:.:1:1:.:.:.:-0.0116954
chr2	190670539	.	T	TA	3497.0699999999997	REJECT	NS=2;DP=332;DPB=428.294;AC=2;AN=4;AF=0.5;RO=148;AO=161;PRO=35.0;PAO=34.0;QR=5617;QA=5832;PQR=1241.0;PQA=1214.5;SRF=65;SRR=83;SAF=78;SAR=83;SRP=7.76406;SAP=3.34749;AB=0.449721;ABP=10.8713;RUN=1;RPP=3.13169;RPPR=5.88603;RPL=82.0;RPR=79.0;EPP=14.3532;EPPR=5.12308;DPRA=0.0;ODDS=185.623;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.2484;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.58;FS=2.5935;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.4805;QD=8.95;RPA=11,12;RU=A;ReadPosRankSum=-0.362;SOR=0.4845;STR;ClippingRankSum=-1.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:27:1034:48:1730:-134.577,0.0,-81.4087:50:57:87:37,53:1102,0,674:1:.:1:.:.:.:-0.00174608	0/1:129.501:287:121:4583:113:4102:-337.551,0.0,-352.62:119:45:265:149,125:2381,0,2968:.:1:1:.:.:.:-0.0116954
chr2	190670539	.	T	TAA	4650.41	REJECT	NS=2;DP=358;DPB=428.294;AC=2;AN=2;AF=0.0;RO=148;AO=10;PRO=35.0;PAO=32.0;QR=5617;QA=356;PQR=1241.0;PQA=1137.5;SRF=65;SRR=83;SAF=4;SAR=6;SRP=7.76406;SAP=3.87889;AB=0.027933;ABP=695.965;RUN=1;RPP=10.8276;RPPR=5.88603;RPL=8.0;RPR=2.0;EPP=3.87889;EPPR=5.12308;DPRA=0.0;ODDS=185.623;GTI=0;TYPE=ins;CIGAR=1M2I16M;NUMALT=3;MEANALT=8.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:89:27:1034:5:169:-134.577,-128.852,-221.897:5:6:85:.:.:1:.:.:.:-0.00174608	./1:160.002:269:121:4583:5:187:-337.551,-329.31,-711.664:5:2:257:.:.:1:.:.:.:-0.0116954
chr2	190670539	.	TA	T	4650.41	REJECT	NS=2;DP=358;DPB=428.294;AC=2;AN=2;AF=0.0;RO=148;AO=23;PRO=35.0;PAO=26.0;QR=5617;QA=852;PQR=1241.0;PQA=916.0;SRF=65;SRR=83;SAF=12;SAR=11;SRP=7.76406;SAP=3.10471;AB=0.0642458;ABP=593.457;RUN=1;RPP=3.10471;RPPR=5.88603;RPL=12.0;RPR=11.0;EPP=5.3706;EPPR=5.12308;DPRA=0.0;ODDS=185.623;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:89:27:1034:5:194:-134.577,-131.484,-278.785:5:6:85:.:.:1:.:.:.:-0.00174608	./1:160.002:269:121:4583:18:658:-337.551,-321.439,-754.263:18:7:257:.:.:1:.:.:.:-0.0116954
chr2	191922841	.	G	A	13083.25	REJECT	NS=2;DP=348;DPB=402.0;AC=4;AN=4;AF=1.0;RO=0;AO=401;PRO=0.0;PAO=0.0;QR=0;QA=15289;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=200;SRP=0.0;SAP=3.01572;AB=0.0;ABP=0.0;RUN=1;RPP=3.92546;RPPR=0.0;RPL=194.0;RPR=207.0;EPP=3.01572;EPPR=0.0;DPRA=0.0;ODDS=71.0458;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7899;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.095;SOR=0.8725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:107:4086:-367.738,-28.9798,0.0:106:100:106:0,105:4309,315,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:295:0:0:294:11203:-1007.62,-79.5782,0.0:294:100:294:0,294:12484,864,0:.:1:1:.:.:.:-0.0116954
chr2	191996518	.	T	C	1298.325	REJECT	NS=2;DP=258;DPB=302.0;AC=2;AN=4;AF=0.5;RO=235;AO=67;PRO=0.0;PAO=0.0;QR=9181;QA=2577;PQR=0.0;PQA=0.0;SRF=148;SRR=87;SAF=43;SAR=24;SRP=37.3935;SAP=14.7103;AB=0.221854;ABP=205.949;RUN=1;RPP=10.3026;RPPR=20.0956;RPL=26.0;RPR=41.0;EPP=5.63551;EPPR=7.89842;DPRA=0.0;ODDS=105.148;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985075;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9605;Dels=0.0;FS=0.804;HaplotypeScore=9.6984;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0905;QD=8.225;ReadPosRankSum=0.876;SOR=0.678;ClippingRankSum=-2.473	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:51:1978:37:1408:-102.911,0.0,-154.209:36:42:87:50,36:1199,0,1827:1:.:1:.:.:.:-0.00174608	0/1:129.501:214:184:7203:30:1169:-47.1679,0.0,-589.967:30:14:214:184,30:668,0,7437:.:1:1:.:.:.:-0.0116954
chr2	192011485	.	T	TA	407.05	REJECT	NS=2;DP=239;DPB=266.118;AC=2;AN=3;AF=0.25;RO=166;AO=27;PRO=23.9167;PAO=15.9167;QR=6173;QA=781;PQR=876.0;PQA=580.0;SRF=39;SRR=127;SAF=6;SAR=21;SRP=104.311;SAP=21.1059;AB=0.112971;ABP=313.967;RUN=1;RPP=6.95112;RPPR=13.2659;RPL=17.0;RPR=10.0;EPP=3.09072;EPPR=14.7833;DPRA=0.0;ODDS=12.7365;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993976;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.648;FS=19.683;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.329;QD=0.98;ReadPosRankSum=0.563;SOR=1.204;ClippingRankSum=-0.754	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:77.1414:61:40:1465:8:234:-7.24686,0.0,-128.075:10:16:59:50,12:107,0,1032:1:.:1:.:.:.:-0.00174608	./1:136.557:178:126:4708:19:547:-41.9412,-28.2325,-433.156:19:11:171:.:.:.:.:1:.:.:.:-0.0116954
chr2	192011485	.	TA	T	407.05	REJECT	NS=2;DP=239;DPB=266.118;AC=2;AN=3;AF=0.25;RO=166;AO=29;PRO=23.9167;PAO=12.9167;QR=6173;QA=1033;PQR=876.0;PQA=469.0;SRF=39;SRR=127;SAF=8;SAR=21;SRP=104.311;SAP=15.6647;AB=0.121339;ABP=300.666;RUN=1;RPP=12.0706;RPPR=13.2659;RPL=20.0;RPR=9.0;EPP=4.88226;EPPR=14.7833;DPRA=0.0;ODDS=12.7365;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993976;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.2828:61:40:1465:4:146:-7.24686,-9.01371,-163.535:4:7:56:.:.:1:.:.:.:-0.00174608	0/1:136.557:178:126:4708:25:887:-41.9412,0.0,-416.014:25:15:171:.:.:1:.:.:.:-0.0116954
chr2	192011485	.	TAA	T	407.05	REJECT	NS=2;DP=239;DPB=266.118;AC=2;AN=2;AF=0.0;RO=166;AO=5;PRO=23.9167;PAO=10.25;QR=6173;QA=140;PQR=876.0;PQA=370.0;SRF=39;SRR=127;SAF=0;SAR=5;SRP=104.311;SAP=13.8677;AB=0.0209205;ABP=479.471;RUN=1;RPP=6.91895;RPPR=13.2659;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=14.7833;DPRA=0.0;ODDS=12.7365;GTI=0;TYPE=del;CIGAR=1M2D14M;NUMALT=3;MEANALT=9.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993976;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.2828:61:40:1465:4:124:-7.24686,-11.8092,-176.064:4:7:56:.:.:1:.:.:.:-0.00174608	./1:136.557:178:126:4708:1:16:-41.9412,-78.7083,-511.464:1:1:171:.:.:1:.:.:.:-0.0116954
chr2	198257795	.	T	C	5987.765	REJECT	NS=2;DP=376;DPB=436.0;AC=2;AN=4;AF=0.5;RO=219;AO=217;PRO=0.0;PAO=0.0;QR=8378;QA=8336;PQR=0.0;PQA=0.0;SRF=123;SRR=96;SAF=110;SAR=107;SRP=10.2386;SAP=3.10036;AB=0.497706;ABP=3.03022;RUN=1;RPP=6.62275;RPPR=3.02022;RPL=118.0;RPR=99.0;EPP=3.82085;EPPR=3.25818;DPRA=0.0;ODDS=386.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995392;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4575;Dels=0.0;FS=2.695;HaplotypeScore=3.8905;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7225;QD=17.81;ReadPosRankSum=1.2015;SOR=0.6735;ClippingRankSum=0.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.373:118:58:2230:61:2337:-178.069,0.0,-168.453:61:51:118:56,61:2077,0,1937:1:.:1:.:.:.:-0.00174608	0/1:119.373:316:161:6148:156:5999:-453.758,0.0,-467.112:155:49:316:161,155:5751,0,5879:.:1:1:.:.:.:-0.0116954
chr2	198265526	.	A	G	6618.445	REJECT	NS=2;DP=397;DPB=454.0;AC=2;AN=4;AF=0.5;RO=219;AO=235;PRO=0.0;PAO=0.0;QR=8328;QA=8982;PQR=0.0;PQA=0.0;SRF=113;SRR=106;SAF=113;SAR=122;SRP=3.49615;SAP=3.75876;AB=0.517621;ABP=4.23474;RUN=1;RPP=4.12838;RPPR=4.686;RPL=123.0;RPR=112.0;EPP=3.01954;EPPR=3.81345;DPRA=0.0;ODDS=352.55;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991489;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7845;Dels=0.0;FS=1.247;HaplotypeScore=13.5471;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.131;QD=18.11;ReadPosRankSum=0.8885;SOR=0.702;ClippingRankSum=-1.279	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7705:113:55:2054:59:2255:-172.084,0.0,-153.978:59:52:113:54,59:1995,0,1746:1:.:1:.:.:.:-0.00174608	0/1:117.7705:340:164:6274:176:6727:-512.968,0.0,-472.247:176:52:340:164,176:6478,0,6009:.:1:1:.:.:.:-0.0116954
chr2	198267770	.	G	GAA	3035.51	REJECT	NS=2;DP=210;DPB=255.2;AC=2;AN=4;AF=0.5;RO=112;AO=102;PRO=26.5;PAO=23.5;QR=4299;QA=3795;PQR=948.0;PQA=841.0;SRF=26;SRR=86;SAF=25;SAR=77;SRP=72.8076;SAP=60.5756;AB=0.470046;ABP=4.70145;RUN=1;RPP=17.4016;RPPR=18.2106;RPL=64.0;RPR=38.0;EPP=8.46027;EPPR=5.80219;DPRA=0.0;ODDS=187.929;GTI=0;TYPE=ins;CIGAR=1M2I14M;NUMALT=1;MEANALT=2.5;LEN=2;MQM=60.098;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.174;FS=0.5895;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=-0.074;QD=16.48;RPA=4,6;RU=A;ReadPosRankSum=-0.4375;SOR=0.5645;STR;ClippingRankSum=-2.315	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:25:956:25:925:-85.7061,0.0,-85.2528:28:50:55:30,31:1109,0,1082:1:.:1:.:.:.:-0.00174608	0/1:129.501:185:87:3343:77:2870:-231.41,0.0,-286.861:81:47:174:98,86:3397,0,4166:.:1:1:.:.:.:-0.0116954
chr2	198283305	.	T	C	4841.67	REJECT	NS=2;DP=329;DPB=376.0;AC=2;AN=4;AF=0.5;RO=195;AO=180;PRO=0.0;PAO=0.0;QR=7100;QA=6722;PQR=0.0;PQA=0.0;SRF=85;SRR=110;SAF=70;SAR=110;SRP=9.97015;SAP=22.3123;AB=0.478723;ABP=4.48875;RUN=1;RPP=18.6449;RPPR=16.6516;RPL=108.0;RPR=72.0;EPP=3.78238;EPPR=16.6516;DPRA=0.0;ODDS=275.619;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977778;PAIREDR=0.984615;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.1765;Dels=0.0;FS=3.859;HaplotypeScore=9.6615;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.544;QD=16.33;ReadPosRankSum=0.2225;SOR=1.084;ClippingRankSum=0.072	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.372:89:48:1769:43:1620:-121.187,0.0,-134.614:42:47:89:45,42:1421,0,1563:1:.:1:.:.:.:-0.00174608	0/1:122.372:283:147:5331:137:5102:-382.127,0.0,-402.696:135:48:282:147,134:4774,0,5029:.:1:1:.:.:.:-0.0116954
chr2	207008763	.	C	A	3268.81	REJECT	NS=2;DP=240;DPB=282.0;AC=2;AN=4;AF=0.5;RO=158;AO=124;PRO=0.0;PAO=0.0;QR=5962;QA=4710;PQR=0.0;PQA=0.0;SRF=95;SRR=63;SAF=83;SAR=41;SRP=17.0836;SAP=33.9012;AB=0.439716;ABP=11.9118;RUN=1;RPP=57.9275;RPPR=32.0915;RPL=34.0;RPR=90.0;EPP=8.68415;EPPR=10.9266;DPRA=0.0;ODDS=200.061;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.016;Dels=0.0;FS=3.057;HaplotypeScore=5.8484;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3305;QD=14.975;ReadPosRankSum=-0.2425;SOR=0.957;ClippingRankSum=-0.181	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:52:1933:33:1262:-90.6088,0.0,-150.988:33:39:84:50,33:1167,0,1878:1:.:1:.:.:.:-0.00174608	0/1:129.501:197:106:4029:91:3448:-256.85,0.0,-309.121:91:46:197:106,91:3242,0,3917:.:1:1:.:.:.:-0.0116954
chr2	209101905	.	GA	G	6901.11	REJECT	NS=2;DP=218;DPB=256.905;AC=4;AN=4;AF=1.0;RO=2;AO=211;PRO=31.0;PAO=68.0;QR=76;QA=7872;PQR=1131.5;PQA=2466.5;SRF=1;SRR=1;SAF=44;SAR=167;SRP=3.0103;SAP=158.708;AB=0.0;ABP=0.0;RUN=1;RPP=14.2176;RPPR=7.35324;RPL=122.0;RPR=89.0;EPP=15.6172;EPPR=3.0103;DPRA=0.0;ODDS=22.2627;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990521;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.008;FS=5.822;MLEAC=2;MLEAF=1.0;MQ=60.025;MQRankSum=0.6095;QD=22.735;RPA=10,9;RU=A;ReadPosRankSum=0.066;SOR=2.2355;STR;ClippingRankSum=-1.954	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:97.84255:60:1:37:52:1950:-190.359,-6.8904,0.0:57:96:59:3,62:1691,110,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:201:1:39:159:5922:-631.258,-45.3106,0.0:176:98:178:3,194:5838,503,0:.:1:1:.:.:.:-0.0116954
chr2	212141680	.	G	A	5353.31	REJECT	NS=2;DP=388;DPB=448.0;AC=2;AN=4;AF=0.5;RO=253;AO=195;PRO=0.0;PAO=0.0;QR=9724;QA=7453;PQR=0.0;PQA=0.0;SRF=126;SRR=127;SAF=117;SAR=78;SRP=3.01888;SAP=19.9478;AB=0.435268;ABP=19.3157;RUN=1;RPP=3.02144;RPPR=3.70551;RPL=97.0;RPR=98.0;EPP=19.9478;EPPR=27.1197;DPRA=0.0;ODDS=294.25;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994872;PAIREDR=0.988142;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6125;Dels=0.0;FS=8.2855;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0685;QD=14.31;ReadPosRankSum=-0.2795;SOR=1.085;ClippingRankSum=1.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:73:2830:46:1791:-128.935,0.0,-222.429:45:39:116:69,45:1463,0,2449:1:.:1:.:.:.:-0.00174608	0/1:129.501:329:180:6894:149:5662:-420.176,0.0,-530.987:149:45:329:180,149:5338,0,6719:.:1:1:.:.:.:-0.0116954
chr2	212146485	.	T	C	12664.849999999999	REJECT	NS=2;DP=337;DPB=392.0;AC=2;AN=2;AF=0.75;RO=0;AO=199;PRO=2.0;PAO=7.0;QR=0;QA=7646;PQR=19.0;PQA=197.0;SRF=0;SRR=0;SAF=103;SAR=96;SRP=0.0;SAP=3.54498;AB=0.518229;ABP=4.11866;RUN=1;RPP=3.02121;RPPR=0.0;RPL=99.0;RPR=100.0;EPP=27.1147;EPPR=0.0;DPRA=0.0;ODDS=309.065;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.98995;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7981;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.585;SOR=0.9085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:100:0:0:56:2119:-343.288,-152.969,-136.202:79:78:100:0,102:4249,309,0:1:.:1:.:.:.:-0.00174608	./1:129.501:288:0:0:143:5527:-959.617,-457.33,-414.798:216:75:285:0,289:12481,864,0:.:1:1:.:.:.:-0.0116954
chr2	212146485	.	TTG	CTC	12876.9	REJECT	NS=2;DP=384;DPB=392.0;AC=2;AN=2;AF=0.5;RO=0;AO=181;PRO=2.0;PAO=6.0;QR=0;QA=6775;PQR=19.0;PQA=218.0;SRF=0;SRR=0;SAF=96;SAR=85;SRP=0.0;SAP=4.46195;AB=0.471354;ABP=5.74726;RUN=1;RPP=7.34125;RPPR=0.0;RPL=100.0;RPR=81.0;EPP=27.3044;EPPR=0.0;DPRA=0.0;ODDS=309.065;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=2;MEANALT=3.5;LEN=3;MQM=60.0;MQMR=0.0;PAIRED=0.994475;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:99:0:0:43:1620:-343.288,-177.161,-163.106:43:43:99:.:.:1:.:.:.:-0.00174608	./1:160.002:285:0:0:138:5155:-959.617,-462.196,-426.253:138:49:281:.:.:1:.:.:.:-0.0116954
chr2	212146487	.	G	C	3259.7700000000004	PASS	DP=194;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.842;Dels=0.0;FS=1.8975;HaplotypeScore=8.8316;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.362;QD=16.115;ReadPosRankSum=1.762;SOR=0.908;ClippingRankSum=0.702	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:57,44:101:99.0:1511,0,1930:44:44:101:1:.:.:.:.:.:-0.00174608	0/1:147,139:287:99.0:5065,0,5433:139:49:286:.:1:.:.:.:.:-0.0116954
chr2	212251864	.	T	C	2053.61	PASS	SOMATIC;NS=2;DP=316;DPB=316.0;AC=1;AN=3;AF=0.25;RO=236;AO=80;PRO=0.0;PAO=0.0;QR=9092;QA=3020;PQR=0.0;PQA=0.0;SRF=71;SRR=165;SAF=34;SAR=46;SRP=84.3117;SAP=6.91895;AB=0.357143;ABP=42.7172;RUN=1;RPP=4.74748;RPPR=3.59917;RPL=36.0;RPR=44.0;EPP=3.44459;EPPR=3.93042;DPRA=2.43478;ODDS=58.4073;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995763;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.375;Dels=0.0;FS=6.22;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.227;QD=11.86;ReadPosRankSum=1.832;SOR=0.359	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.232:90:92:3544:0:0:0.0,-24.94,-319.04:0:0:90:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:122.116:224:144:5548:80:3020:-210.992,0.0,-438.434:80:36:224:139,76:38.0:0.351:2:2684,0,5552:.:1:1:.:.:1:-0.0116954
chr2	212495336	.	G	A	6.9082	REJECT	NS=2;DP=152;DPB=199.654;AC=2;AN=2;AF=0.0;RO=121;AO=6;PRO=63.0;PAO=1.0;QR=4545;QA=84;PQR=2266.0;PQA=14.0;SRF=19;SRR=102;SAF=0;SAR=6;SRP=126.641;SAP=16.0391;AB=0.0967742;ABP=46.79;RUN=1;RPP=3.0103;RPPR=88.4515;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=36.1926;DPRA=0.0;ODDS=1.36278;GTI=0;TYPE=snp;CIGAR=1X25M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983471;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.90819:31:23:869:3:42:-3.74482,-22.7482,-262.066:3:10:30:.:.:1:.:.:.:-0.00174608	./1:86.9058:121:98:3676:3:42:0.0,-65.1303,-827.161:3:3:117:.:.:1:.:.:.:-0.0116954
chr2	212495336	.	G	GA	6.9082	REJECT	NS=2;DP=152;DPB=199.654;AC=2;AN=2;AF=0.0;RO=121;AO=10;PRO=63.0;PAO=20.0;QR=4545;QA=354;PQR=2266.0;PQA=704.0;SRF=19;SRR=102;SAF=1;SAR=9;SRP=126.641;SAP=16.9077;AB=0.0322581;ABP=61.9202;RUN=1;RPP=16.9077;RPPR=88.4515;RPL=9.0;RPR=1.0;EPP=10.8276;EPPR=36.1926;DPRA=0.0;ODDS=1.36278;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983471;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.90819:31:23:869:1:39:-3.74482,-6.48413,-107.64:1:3:30:.:.:1:.:.:.:-0.00174608	./1:86.9058:121:98:3676:9:315:0.0,-9.85905,-413.938:9:8:117:.:.:1:.:.:.:-0.0116954
chr2	212495336	.	GA	G	6.9082	REJECT	NS=2;DP=152;DPB=199.654;AC=2;AN=3;AF=0.25;RO=121;AO=10;PRO=63.0;PAO=24.0;QR=4545;QA=359;PQR=2266.0;PQA=818.0;SRF=19;SRR=102;SAF=2;SAR=8;SRP=126.641;SAP=10.8276;AB=0.0967742;ABP=46.79;RUN=1;RPP=3.87889;RPPR=88.4515;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=36.1926;DPRA=0.0;ODDS=1.36278;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9;PAIREDR=0.983471;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.90819:31:23:869:3:117:-3.74482,0.0,-100.613:3:10:30:.:.:1:.:.:.:-0.00174608	./1:86.9058:121:98:3676:7:242:0.0,-6.7103,-410.264:7:6:117:.:.:1:.:.:.:-0.0116954
chr2	212543924	.	A	G	2231.525	REJECT	NS=2;DP=291;DPB=340.0;AC=2;AN=4;AF=0.5;RO=241;AO=99;PRO=0.0;PAO=0.0;QR=9157;QA=3822;PQR=0.0;PQA=0.0;SRF=59;SRR=182;SAF=21;SAR=78;SRP=139.327;SAP=74.2741;AB=0.291176;ABP=131.791;RUN=1;RPP=16.7191;RPPR=68.1094;RPL=62.0;RPR=37.0;EPP=3.55865;EPPR=3.01931;DPRA=0.0;ODDS=189.178;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.962656;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6765;Dels=0.0;FS=5.4265;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4545;QD=13.82;ReadPosRankSum=1.753;SOR=1.0585;ClippingRankSum=-0.556	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5565:90:35:1296:56:2147:-168.611,0.0,-92.0224:56:62:90:33,56:2118,0,1065:1:.:1:.:.:.:-0.00174608	0/1:119.5565:245:206:7861:43:1675:-83.2326,0.0,-639.695:43:17:245:199,43:1161,0,7757:.:1:1:.:.:.:-0.0116954
chr2	212578379	.	T	TA	619.828	REJECT	NS=2;DP=155;DPB=198.667;AC=2;AN=2;AF=0.0;RO=81;AO=17;PRO=35.5;PAO=18.5;QR=3038;QA=480;PQR=1252.92;PQA=641.917;SRF=8;SRR=73;SAF=0;SAR=17;SRP=116.275;SAP=39.9253;AB=0.109677;ABP=208.123;RUN=1;RPP=3.13803;RPPR=3.25157;RPL=8.0;RPR=9.0;EPP=3.13803;EPPR=3.68051;DPRA=0.0;ODDS=36.5376;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.941176;PAIREDR=0.975309;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.344:40:16:586:5:161:-26.9154,-16.3957,-76.2528:5:15:33:.:.:1:.:.:.:-0.00174608	./1:160.002:115:65:2452:12:319:-44.8069,-35.624,-280.62:12:12:100:.:.:1:.:.:.:-0.0116954
chr2	212578379	.	TA	T	476.279	REJECT	NS=2;DP=155;DPB=198.667;AC=2;AN=4;AF=0.5;RO=81;AO=23;PRO=35.5;PAO=27.5;QR=3038;QA=732;PQR=1252.92;PQA=991.917;SRF=8;SRR=73;SAF=1;SAR=22;SRP=116.275;SAP=44.6459;AB=0.148387;ABP=169.457;RUN=1;RPP=3.86001;RPPR=3.25157;RPL=10.0;RPR=13.0;EPP=5.3706;EPPR=3.68051;DPRA=0.0;ODDS=36.5376;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.975309;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.112;FS=2.231;MLEAC=1;MLEAF=0.5;MQ=60.095;MQRankSum=-0.0235;QD=4.165;RPA=14,13;RU=A;ReadPosRankSum=-2.1885;SOR=0.3645;STR;ClippingRankSum=-0.502	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.172:40:16:586:8:254:-26.9154,0.0,-63.9219:15:39:37:19,22:361,0,298:1:.:1:.:.:.:-0.00174608	0/1:129.501:154:65:2452:15:478:-44.8069,0.0,-248.195:27:21:123:107,40:370,0,1888:.:1:1:.:.:.:-0.0116954
chr2	212578379	.	TAA	T	619.828	REJECT	NS=2;DP=155;DPB=198.667;AC=2;AN=2;AF=0.0;RO=81;AO=12;PRO=35.5;PAO=17.5;QR=3038;QA=329;PQR=1252.92;PQA=584.25;SRF=8;SRR=73;SAF=1;SAR=11;SRP=116.275;SAP=21.1059;AB=0.0774194;ABP=243.427;RUN=1;RPP=5.9056;RPPR=3.25157;RPL=4.0;RPR=8.0;EPP=3.73412;EPPR=3.68051;DPRA=0.0;ODDS=36.5376;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=3;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.975309;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.344:40:16:586:4:118:-26.9154,-22.4401,-106.908:4:12:33:.:.:1:.:.:.:-0.00174608	./1:160.002:115:65:2452:8:211:-44.8069,-44.2668,-304.646:8:8:100:.:.:1:.:.:.:-0.0116954
chr2	213490883	.	G	A	1200.47	REJECT	NS=1;DP=111;DPB=111.0;AC=1;AN=4;AF=0.5;RO=64;AO=47;PRO=0.0;PAO=0.0;QR=2413;QA=1763;PQR=0.0;PQA=0.0;SRF=26;SRR=38;SAF=13;SAR=34;SRP=7.89611;SAP=23.3852;AB=0.423423;ABP=8.66395;RUN=1;RPP=16.3625;RPPR=29.6108;RPL=32.0;RPR=15.0;EPP=6.75262;EPPR=22.5536;DPRA=0.0;ODDS=276.418;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.563;FS=5.213;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.29;QD=13.77;ReadPosRankSum=1.563;SOR=1.258;ClippingRankSum=-0.603	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:64:2413:47:1763:-128.625,0.0,-187.102:45:42:107:59,44:1474,0,2013:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-28.2448
chr2	213491656	.	T	TCA	1511.02	REJECT	NS=1;DP=59;DPB=81.2222;AC=1;AN=3;AF=0.5;RO=5;AO=23;PRO=14.6667;PAO=19.6667;QR=167;QA=777;PQR=500.333;PQA=686.333;SRF=2;SRR=3;SAF=13;SAR=10;SRP=3.44459;SAP=3.86001;AB=0.389831;ABP=9.23028;RUN=1;RPP=5.3706;RPPR=3.44459;RPL=9.0;RPR=14.0;EPP=7.63648;EPPR=13.8677;DPRA=0.0;ODDS=149.281;GTI=0;TYPE=ins;CIGAR=1M2I35M;NUMALT=2;MEANALT=6.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.461;FS=3.844;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.368;QD=22.66;ReadPosRankSum=-0.807;SOR=1.34;ClippingRankSum=0.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.822:65:5:167:23:777:-157.746,-79.9902,-86.1138:26:42:62:7,29:1986,1099,1237:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-28.2448
chr2	213491656	.	TCACA	T	1511.02	REJECT	NS=1;DP=59;DPB=81.2222;AC=1;AN=3;AF=0.5;RO=5;AO=26;PRO=14.6667;PAO=17.6667;QR=167;QA=987;PQR=500.333;PQA=597.333;SRF=2;SRR=3;SAF=16;SAR=10;SRP=3.44459;SAP=6.01695;AB=0.440678;ABP=4.81373;RUN=1;RPP=4.34659;RPPR=3.44459;RPL=11.0;RPR=15.0;EPP=15.0369;EPPR=13.8677;DPRA=0.0;ODDS=149.281;GTI=0;TYPE=del;CIGAR=1M4D31M;NUMALT=2;MEANALT=6.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.461;FS=3.844;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.368;QD=22.66;ReadPosRankSum=-0.807;SOR=1.34;ClippingRankSum=0.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.822:65:5:167:26:987:-157.746,-65.4261,-95.187:30:48:62:7,35:1986,740,1352:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-28.2448
chr2	213492898	.	G	A	5017.25	REJECT	NS=2;DP=198;DPB=221.0;AC=2;AN=4;AF=0.5;RO=52;AO=169;PRO=0.0;PAO=0.0;QR=1958;QA=6507;PQR=0.0;PQA=0.0;SRF=11;SRR=41;SAF=37;SAR=132;SRP=40.5935;SAP=118.972;AB=0.764706;ABP=137.514;RUN=1;RPP=57.2971;RPPR=16.5402;RPL=117.0;RPR=52.0;EPP=5.90131;EPPR=3.67845;DPRA=0.0;ODDS=123.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994083;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3005;Dels=0.0;FS=1.996;HaplotypeScore=30.9928;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.086;QD=24.73;ReadPosRankSum=1.527;SOR=0.619;ClippingRankSum=-0.752	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:44:21:765:24:939:-72.4314,0.0,-56.7465:23:52:44:21,23:801,0,684:1:.:1:.:.:.:-0.00174608	0/1:129.501:176:31:1193:145:5568:-453.275,0.0,-59.6487:145:82:176:31,145:5712,0,814:.:1:1:.:.:.:3.01261e-05
chr2	213499899	.	T	C	5416.370000000001	REJECT	NS=2;DP=389;DPB=449.0;AC=2;AN=4;AF=0.5;RO=245;AO=203;PRO=0.0;PAO=0.0;QR=9140;QA=7647;PQR=0.0;PQA=0.0;SRF=145;SRR=100;SAF=114;SAR=89;SRP=20.9582;SAP=9.69587;AB=0.452116;ABP=11.9525;RUN=1;RPP=7.72764;RPPR=20.9582;RPL=112.0;RPR=91.0;EPP=26.6398;EPPR=24.2907;DPRA=0.0;ODDS=328.057;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0816;PAIRED=0.990148;PAIREDR=0.995918;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.385;Dels=0.0;FS=1.6315;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.035;MQRankSum=0.142;QD=15.63;ReadPosRankSum=-0.304;SOR=0.562;ClippingRankSum=0.399	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5755:115:65:2412:52:1951:-143.884,0.0,-185.422:51:44:115:63,51:1775,0,2176:1:.:1:.:.:.:-0.00174608	0/1:119.5755:331:180:6728:151:5696:-423.081,0.0,-515.587:150:46:330:179,150:5287,0,6517:.:1:1:.:.:.:3.01261e-05
chr2	213886454	.	A	T	5168.200000000001	REJECT	NS=2;DP=355;DPB=414.0;AC=2;AN=4;AF=0.5;RO=221;AO=193;PRO=0.0;PAO=0.0;QR=8490;QA=7346;PQR=0.0;PQA=0.0;SRF=87;SRR=134;SAF=77;SAR=116;SRP=24.7152;SAP=20.1233;AB=0.466184;ABP=7.12246;RUN=1;RPP=8.96216;RPPR=3.49176;RPL=108.0;RPR=85.0;EPP=4.37169;EPPR=3.80618;DPRA=0.0;ODDS=352.386;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989637;PAIREDR=0.995475;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3965;Dels=0.0;FS=0.3545;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7095;QD=16.465;ReadPosRankSum=-0.7695;SOR=0.6525;ClippingRankSum=0.352	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:63:2371:54:2061:-153.807,0.0,-181.682:53:46:115:61,53:1882,0,2093:1:.:1:.:.:.:-0.00174608	0/1:129.501:296:158:6119:139:5285:-394.924,0.0,-469.942:138:47:296:158,138:4962,0,5973:.:1:1:.:.:.:3.01261e-05
chr2	214012403	.	CAA	C	13884.5	REJECT	NS=2;DP=337;DPB=440.4;AC=1;AN=3;AF=0.25;RO=0;AO=16;PRO=34.6667;PAO=41.1667;QR=0;QA=612;PQR=1179.5;PQA=1398.5;SRF=0;SRR=0;SAF=12;SAR=4;SRP=0.0;SAP=11.6962;AB=0.105882;ABP=117.69;RUN=1;RPP=3.55317;RPPR=0.0;RPL=9.0;RPR=7.0;EPP=7.89611;EPPR=0.0;DPRA=0.0;ODDS=4.37764;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=2;MEANALT=5.5;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.0541858:85:0:0:9:344:-357.157,-305.42,-300.812:9:11:83:.:.:1:.:.:.:-0.00174608	0/0:137.165:252:0:0:7:268:-1038.19,-977.404,-972.224:7:3:247:.:.:.:.:.:.:3.01261e-05
chr2	214012405	.	A	C	13417.65	REJECT	NS=2;DP=329;DPB=440.4;AC=3;AN=3;AF=0.75;RO=0;AO=314;PRO=34.6667;PAO=117.167;QR=0;QA=12072;PQR=1179.5;PQA=4289.0;SRF=0;SRR=0;SAF=162;SAR=152;SRP=0.0;SAP=3.70185;AB=0.870588;ABP=104.405;RUN=1;RPP=4.36574;RPPR=0.0;RPL=164.0;RPR=150.0;EPP=4.36574;EPPR=0.0;DPRA=0.0;ODDS=4.37764;GTI=0;TYPE=snp;CIGAR=2M1X17M;NUMALT=2;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996815;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.1845;Dels=0.03;FS=3.9275;HaplotypeScore=25.2206;MLEAC=1;MLEAF=0.75;MQ=59.98;MQRankSum=0.3825;QD=29.37;ReadPosRankSum=-0.0585;SOR=0.4025;ClippingRankSum=-0.318	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.5270929:89:0:0:74:2835:-357.157,-30.6875,-2.52073:79:89:88:9,84:2769,0,65:1:.:1:.:.:.:-0.00174608	1/1:118.0825:282:0:0:240:9237:-1038.19,-58.5309,0.0:274:97:280:5,308:12979,753,0:.:1:1:.:.:.:3.01261e-05
chr2	214012508	.	C	T	2164.36	PASS	SOMATIC;NS=2;DP=383;DPB=383.0;AC=1;AN=3;AF=0.25;RO=296;AO=87;PRO=0.0;PAO=0.0;QR=11229;QA=3350;PQR=0.0;PQA=0.0;SRF=109;SRR=187;SAF=36;SAR=51;SRP=47.6429;SAP=8.62618;AB=0.3;ABP=103.767;RUN=1;RPP=5.03202;RPPR=29.4201;RPL=48.0;RPR=39.0;EPP=8.62618;EPPR=13.6036;DPRA=3.11828;ODDS=59.0243;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988506;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.514;Dels=0.0;FS=2.226;HaplotypeScore=5.8653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.072;QD=9.95;ReadPosRankSum=-0.032;SOR=0.513	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:91:93:3579:0:0:0.0,-25.2079,-322.183:0:0:91:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:129.501:288:203:7650:87:3350:-222.835,0.0,-609.572:86:30:288:195,81:38.0:0.288:2:2893,0,7591:.:1:1:.:.:1:3.01261e-05
chr2	215595164	.	G	A	5824.15	REJECT	NS=2;DP=382;DPB=427.0;AC=2;AN=4;AF=0.5;RO=224;AO=203;PRO=0.0;PAO=0.0;QR=8635;QA=7884;PQR=0.0;PQA=0.0;SRF=119;SRR=105;SAF=112;SAR=91;SRP=4.91034;SAP=7.72764;AB=0.47541;ABP=5.25297;RUN=1;RPP=3.10657;RPPR=4.40625;RPL=103.0;RPR=100.0;EPP=48.2047;EPPR=14.2166;DPRA=0.0;ODDS=267.77;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9815;Dels=0.0;FS=1.432;HaplotypeScore=7.9268;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8315;QD=16.91;ReadPosRankSum=-0.198;SOR=0.6725;ClippingRankSum=-0.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.2085:87:49:1842:40:1573:-117.479,0.0,-141.705:39:45:87:47,38:1388,0,1613:1:.:1:.:.:.:-0.00174608	0/1:125.2085:338:175:6793:163:6311:-476.051,0.0,-519.413:163:48:338:175,163:6053,0,6613:.:1:1:.:.:.:3.01261e-05
chr2	215595645	.	C	T	1941.925	REJECT	NS=2;DP=356;DPB=403.0;AC=2;AN=4;AF=0.5;RO=310;AO=93;PRO=0.0;PAO=0.0;QR=11904;QA=3515;PQR=0.0;PQA=0.0;SRF=145;SRR=165;SAF=46;SAR=47;SRP=5.8122;SAP=3.03365;AB=0.230769;ABP=256.738;RUN=1;RPP=5.83555;RPPR=39.3229;RPL=41.0;RPR=52.0;EPP=5.83555;EPPR=3.26247;DPRA=0.0;ODDS=136.308;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990323;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1315;Dels=0.0;FS=0.0;HaplotypeScore=11.7432;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5285;QD=11.64;ReadPosRankSum=-0.1175;SOR=0.741;ClippingRankSum=-0.272	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.631:91:42:1626:51:1922:-147.807,0.0,-121.177:50:55:91:40,50:1902,0,1352:1:.:1:.:.:.:-0.00174608	0/1:117.631:310:268:10278:42:1593:-59.3149,0.0,-840.505:42:14:310:268,42:861,0,10591:.:1:1:.:.:.:3.01261e-05
chr2	215632192	.	G	A	1034.0900000000001	REJECT	NS=2;DP=271;DPB=304.0;AC=2;AN=4;AF=0.5;RO=246;AO=57;PRO=0.0;PAO=0.0;QR=9443;QA=2208;PQR=0.0;PQA=0.0;SRF=192;SRR=54;SAF=43;SAR=14;SRP=171.114;SAP=35.049;AB=0.1875;ABP=260.873;RUN=1;RPP=16.763;RPPR=94.8477;RPL=19.0;RPR=38.0;EPP=4.877;EPPR=4.74042;DPRA=0.0;ODDS=76.0641;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.3509;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.796;Dels=0.0;FS=3.5815;HaplotypeScore=7.7788;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.0865;QD=8.835;ReadPosRankSum=-0.194;SOR=0.712;ClippingRankSum=0.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:65:38:1454:28:1074:-78.8285,0.0,-113.058:28:43:65:36,28:1031,0,1298:1:.:1:.:.:.:-0.00174608	0/1:129.501:238:208:7989:29:1134:-37.802,0.0,-654.458:29:12:237:208,29:562,0,8251:.:1:1:.:.:.:3.01261e-05
chr2	215632255	.	C	T	1084.27	PASS	DP=213;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.256;Dels=0.0;FS=8.323;HaplotypeScore=4.9239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4;QD=8.535;ReadPosRankSum=0.9145;SOR=1.2965;ClippingRankSum=0.108	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52,43:95:99.0:1451,0,1789:43:45:95:1:.:.:.:.:.:-0.00174608	0/1:290,40:331:99.0:774,0,11664:40:12:330:.:1:.:.:.:.:3.01261e-05
chr2	215632255	.	CA	TG	13191.6	REJECT	NS=2;DP=421;DPB=424.5;AC=2;AN=2;AF=0.5;RO=0;AO=80;PRO=2.0;PAO=2.0;QR=0;QA=3000;PQR=76.0;PQA=70.0;SRF=0;SRR=0;SAF=56;SAR=24;SRP=0.0;SAP=30.8051;AB=0.190024;ABP=354.371;RUN=1;RPP=3.98746;RPPR=0.0;RPL=43.0;RPR=37.0;EPP=11.8048;EPPR=0.0;DPRA=0.0;ODDS=103.013;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=2;MEANALT=3.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:94:0:0:41:1495:-296.266,-167.563,-162.574:41:44:93:.:.:1:.:.:.:-0.00174608	./1:160.002:327:0:0:39:1505:-1043.28,-911.464,-918.609:39:12:326:.:.:1:.:.:.:3.01261e-05
chr2	215632256	.	A	G	13191.6	REJECT	NS=2;DP=374;DPB=424.5;AC=2;AN=2;AF=0.75;RO=0;AO=339;PRO=2.0;PAO=3.0;QR=0;QA=13004;PQR=76.0;PQA=111.0;SRF=0;SRR=0;SAF=189;SAR=150;SRP=0.0;SAP=12.7531;AB=0.805226;ABP=343.684;RUN=1;RPP=5.32269;RPPR=0.0;RPL=179.0;RPR=160.0;EPP=60.8201;EPPR=0.0;DPRA=0.0;ODDS=103.013;GTI=0;TYPE=snp;CIGAR=1M1X;NUMALT=2;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99705;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.9238;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.51;SOR=1.118	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:94:0:0:52:2012:-296.266,-123.483,-108.839:73:78:93:0,94:3960,283,0:1:.:1:.:.:.:-0.00174608	./1:129.501:327:0:0:287:10992:-1043.28,-126.6,-48.3722:307:94:327:0,328:14013,969,0:.:1:1:.:.:.:3.01261e-05
chr2	215634055	.	C	T	922.6044999999999	REJECT	NS=2;DP=259;DPB=293.0;AC=2;AN=4;AF=0.5;RO=236;AO=57;PRO=0.0;PAO=0.0;QR=8958;QA=2084;PQR=0.0;PQA=0.0;SRF=49;SRR=187;SAF=13;SAR=44;SRP=178.237;SAP=39.6206;AB=0.194539;ABP=240.472;RUN=1;RPP=6.09608;RPPR=24.2098;RPL=33.0;RPR=24.0;EPP=4.877;EPPR=13.6468;DPRA=0.0;ODDS=51.2547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.964912;PAIREDR=0.995763;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.7785;Dels=0.0;FS=1.712;HaplotypeScore=4.8474;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1715;QD=7.14;ReadPosRankSum=1.1195;SOR=0.5815;ClippingRankSum=-0.801	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:66:37:1410:31:1149:-85.0476,0.0,-108.56:29:44:66:37,28:886,0,1388:1:.:1:.:.:.:-0.00174608	0/1:129.501:225:199:7548:26:935:-23.2114,0.0,-618.086:26:12:225:199,26:361,0,7740:.:1:1:.:.:.:3.01261e-05
chr2	215645464	.	C	G	5428.835	REJECT	NS=2;DP=362;DPB=412.0;AC=2;AN=4;AF=0.5;RO=216;AO=195;PRO=0.0;PAO=0.0;QR=8248;QA=7392;PQR=0.0;PQA=0.0;SRF=116;SRR=100;SAF=93;SAR=102;SRP=5.5839;SAP=3.9123;AB=0.473301;ABP=5.56125;RUN=1;RPP=3.02144;RPPR=8.80089;RPL=97.0;RPR=98.0;EPP=3.9123;EPPR=3.6537;DPRA=0.0;ODDS=291.719;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994872;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2345;Dels=0.0;FS=5.492;HaplotypeScore=8.7704;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4485;QD=16.08;ReadPosRankSum=1.446;SOR=0.7365;ClippingRankSum=-1.557	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.834:99:54:2074:46:1715:-127.283,0.0,-159.585:45:45:99:54,45:1504,0,1904:1:.:1:.:.:.:-0.00174608	0/1:117.834:312:162:6174:149:5677:-426.419,0.0,-471.131:149:48:311:162,149:5411,0,5970:.:1:1:.:.:.:3.01261e-05
chr2	215674224	.	G	A	1474.64	REJECT	NS=1;DP=121;DPB=121.0;AC=1;AN=4;AF=0.5;RO=65;AO=55;PRO=0.0;PAO=0.0;QR=2430;QA=2069;PQR=0.0;PQA=0.0;SRF=21;SRR=44;SAF=24;SAR=31;SRP=20.6827;SAP=4.94488;AB=0.454545;ABP=5.18177;RUN=1;RPP=7.78754;RPPR=4.64726;RPL=33.0;RPR=22.0;EPP=9.68264;EPPR=3.31097;DPRA=0.0;ODDS=339.549;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984615;technology.ILLUMINA=1.0;BaseQRankSum=0.578;FS=5.881;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.999;QD=15.38;ReadPosRankSum=0.664;SOR=0.343;ClippingRankSum=-2.273	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.2885:120:65:2430:55:2069:-153.699,0.0,-186.219:55:46:119:64,55:1859,0,2306:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:3.01261e-05
chr2	223161889	.	A	G	14622.2	REJECT	NS=2;DP=388;DPB=448.0;AC=4;AN=4;AF=1.0;RO=0;AO=448;PRO=0.0;PAO=0.0;QR=0;QA=17067;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=167;SAR=281;SRP=0.0;SAP=66.0024;AB=0.0;ABP=0.0;RUN=1;RPP=6.2869;RPPR=0.0;RPL=237.0;RPR=211.0;EPP=55.4358;EPPR=0.0;DPRA=0.0;ODDS=78.5297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997768;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7209;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.665;SOR=1.3525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:118:0:0:119:4533:-407.944,-32.23,0.0:118:100:118:0,117:4770,351,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:329:0:0:329:12534:-1126.94,-88.6878,0.0:329:100:329:0,329:14086,978,0:.:1:1:.:.:.:3.01261e-05
chr2	225020875	.	C	A	5997.01	REJECT	NS=2;DP=220;DPB=253.0;AC=2;AN=4;AF=0.5;RO=55;AO=197;PRO=0.0;PAO=0.0;QR=2095;QA=7625;PQR=0.0;PQA=0.0;SRF=22;SRR=33;SAF=66;SAR=131;SRP=7.78754;SAP=49.5812;AB=0.778656;ABP=173.647;RUN=1;RPP=55.4894;RPPR=23.8959;RPL=133.0;RPR=64.0;EPP=23.3913;EPPR=9.68264;DPRA=0.0;ODDS=79.5679;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981818;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1565;Dels=0.0;FS=4.47;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3265;QD=26.835;ReadPosRankSum=0.437;SOR=1.0905;ClippingRankSum=-0.159	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:64:30:1122:35:1387:-107.287,0.0,-83.4286:35:55:64:28,35:1285,0,892:1:.:1:.:.:.:-0.00174608	0/1:129.501:187:25:973:162:6238:-510.549,0.0,-36.8702:162:87:187:25,162:6450,0,532:.:1:1:.:.:.:3.01261e-05
chr2	225346646	.	T	C	3430.86	PASS	SOMATIC;NS=2;DP=435;DPB=435.0;AC=1;AN=3;AF=0.25;RO=308;AO=127;PRO=0.0;PAO=0.0;QR=11836;QA=4821;PQR=0.0;PQA=0.0;SRF=175;SRR=133;SAF=72;SAR=55;SRP=15.4469;SAP=7.95168;AB=0.409677;ABP=24.9772;RUN=1;RPP=9.18275;RPPR=3.46152;RPL=73.0;RPR=54.0;EPP=4.39525;EPPR=3.0385;DPRA=2.48;ODDS=78.9829;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984252;PAIREDR=0.99026;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.802;Dels=0.0;FS=0.886;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.124;QD=14.6;ReadPosRankSum=-1.017;SOR=0.758	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.66:120:125:4782:0:0:0.0,-33.8759,-430.353:0:0:120:116,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:118.83:306:183:7054:127:4821:-349.658,0.0,-550.532:126:41:306:173,119:38.0:0.405:2:4496,0,6857:.:1:1:.:.:1:3.01261e-05
chr2	225362478	.	C	T	2382.7	PASS	SOMATIC;NS=2;DP=364;DPB=364.0;AC=1;AN=3;AF=0.25;RO=270;AO=94;PRO=0.0;PAO=0.0;QR=10273;QA=3625;PQR=0.0;PQA=0.0;SRF=168;SRR=102;SAF=66;SAR=28;SRP=38.0434;SAP=36.3678;AB=0.327526;ABP=77.1657;RUN=1;RPP=18.6264;RPPR=8.44702;RPL=34.0;RPR=60.0;EPP=3.1027;EPPR=4.58663;DPRA=3.72727;ODDS=49.0513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.562;Dels=0.0;FS=6.271;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.451;QD=11.18;ReadPosRankSum=0.59;SOR=1.069	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:149.546:76:77:2968:0:0:0.0,-20.8768,-267.242:0:0:76:75,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:124.273:287:193:7305:94:3625:-248.371,0.0,-579.339:94:33:287:187,89:38.0:0.318:2:3238,0,7256:.:1:1:.:.:1:3.01261e-05
chr2	225365056	.	A	G	1892.8	PASS	SOMATIC;NS=2;DP=277;DPB=277.0;AC=1;AN=3;AF=0.25;RO=201;AO=76;PRO=0.0;PAO=0.0;QR=7700;QA=2877;PQR=0.0;PQA=0.0;SRF=133;SRR=68;SAF=56;SAR=20;SRP=48.6544;SAP=40.0396;AB=0.389744;ABP=23.6003;RUN=1;RPP=74.4403;RPPR=60.5813;RPL=13.0;RPR=63.0;EPP=5.8675;EPPR=8.72527;DPRA=2.37805;ODDS=52.167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.493;Dels=0.0;FS=7.914;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.927;QD=13.21;ReadPosRankSum=-1.646;SOR=1.225	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.195:80:82:3142:0:0:0.0,-22.2299,-282.887:0:0:80:78,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:119.5975:195:119:4558:76:2877:-206.013,0.0,-357.252:76:39:195:117,75:38.0:0.395:2:2605,0,4512:.:1:1:.:.:1:3.01261e-05
chr2	225367669	.	C	T	1994.72	PASS	SOMATIC;NS=2;DP=318;DPB=318.0;AC=1;AN=3;AF=0.25;RO=239;AO=78;PRO=0.0;PAO=0.0;QR=9179;QA=3061;PQR=0.0;PQA=0.0;SRF=162;SRR=77;SAF=47;SAR=31;SRP=68.6542;SAP=10.1372;AB=0.320988;ABP=70.6476;RUN=1;RPP=43.2104;RPPR=41.3972;RPL=20.0;RPR=58.0;EPP=4.79202;EPPR=7.01708;DPRA=3.24;ODDS=47.158;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987448;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.961;Dels=0.0;FS=6.068;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.662;QD=11.02;ReadPosRankSum=-0.302;SOR=0.396	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.262:73:74:2839:0:0:0.0,-20.0545,-255.627:0:0:72:71,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:120.631:243:165:6340:78:3061:-209.507,0.0,-504.48:78:32:243:160,76:39.0:0.322:2:2705,0,6379:.:1:1:.:.:1:3.01261e-05
chr2	225434445	.	A	G	7868.45	REJECT	NS=2;DP=376;DPB=426.0;AC=3;AN=4;AF=0.75;RO=139;AO=286;PRO=0.0;PAO=0.0;QR=5345;QA=10872;PQR=0.0;PQA=0.0;SRF=64;SRR=75;SAF=126;SAR=160;SRP=4.90057;SAP=11.7873;AB=0.573171;ABP=18.2636;RUN=1;RPP=3.49622;RPPR=6.52527;RPL=147.0;RPR=139.0;EPP=26.8206;EPPR=12.7741;DPRA=0.0;ODDS=62.1381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9928;PAIRED=0.986014;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.844;Dels=0.0;FS=0.0;HaplotypeScore=6.8236;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.248;QD=26.735;ReadPosRankSum=0.456;SOR=0.9775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:98:3726:-335.408,-26.5603,0.0:95:100:95:0,92:3778,277,0:1:.:1:.:.:.:-0.00174608	0/1:129.501:327:139:5345:188:7146:-554.172,0.0,-392.221:187:57:326:139,187:6961,0,5039:.:1:1:.:.:.:3.01261e-05
chr2	228002144	.	T	C	2796.41	REJECT	NS=1;DP=86;DPB=86.0;AC=2;AN=4;AF=1.0;RO=0;AO=86;PRO=0.0;PAO=0.0;QR=0;QA=3205;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=30;SAR=56;SRP=0.0;SAP=20.0791;AB=0.0;ABP=0.0;RUN=1;RPP=39.4708;RPPR=0.0;RPL=62.0;RPR=24.0;EPP=5.53527;EPPR=0.0;DPRA=0.0;ODDS=58.2301;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988372;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.63;SOR=1.501	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.703:85:0:0:86:3205:-288.532,-23.289,0.0:85:100:85:0,84:3450,252,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:3.01261e-05
chr2	231110582	.	C	T	1873.365	REJECT	NS=2;DP=308;DPB=356.0;AC=2;AN=4;AF=0.5;RO=262;AO=94;PRO=0.0;PAO=0.0;QR=10022;QA=3536;PQR=0.0;PQA=0.0;SRF=151;SRR=111;SAF=55;SAR=39;SRP=16.2712;SAP=8.9241;AB=0.264045;ABP=175.167;RUN=1;RPP=14.1911;RPPR=30.8913;RPL=36.0;RPR=58.0;EPP=32.9489;EPPR=13.7516;DPRA=0.0;ODDS=164.324;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992366;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.301;Dels=0.0;FS=4.2725;HaplotypeScore=2.9304;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0635;QD=11.0;ReadPosRankSum=-0.6795;SOR=0.5655;ClippingRankSum=-1.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:42:1586:52:1927:-148.0,0.0,-117.321:50:54:91:41,48:1660,0,1376:1:.:1:.:.:.:-0.00174608	0/1:129.501:261:220:8436:42:1609:-73.7961,0.0,-687.849:42:16:261:219,42:1039,0,8568:.:1:1:.:.:.:3.01261e-05
chr2	231115790	.	G	A	1500.03	REJECT	NS=2;DP=260;DPB=295.0;AC=2;AN=4;AF=0.5;RO=220;AO=75;PRO=0.0;PAO=0.0;QR=8449;QA=2840;PQR=0.0;PQA=0.0;SRF=78;SRR=142;SAF=28;SAR=47;SRP=43.4392;SAP=13.4623;AB=0.254237;ABP=157.774;RUN=1;RPP=9.52472;RPPR=22.1193;RPL=45.0;RPR=30.0;EPP=15.7786;EPPR=25.7515;DPRA=0.0;ODDS=140.021;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1565;Dels=0.0;FS=1.695;HaplotypeScore=6.8544;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.211;QD=11.57;ReadPosRankSum=0.3455;SOR=0.605;ClippingRankSum=1.377	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4465:68:31:1202:38:1462:-112.946,0.0,-89.5476:38:55:68:30,38:1355,0,1057:1:.:1:.:.:.:-0.00174608	0/1:120.4465:226:189:7247:37:1378:-62.7612,0.0,-590.717:37:16:226:189,37:848,0,7424:.:1:1:.:.:.:3.01261e-05
chr2	231120255	.	CG	C	8157.405	REJECT	NS=2;DP=252;DPB=254.133;AC=2;AN=2;AF=0.5;RO=0;AO=62;PRO=5.5;PAO=11.5;QR=0;QA=2159;PQR=198.083;PQA=389.083;SRF=0;SRR=0;SAF=13;SAR=49;SRP=0.0;SAP=48.4011;AB=0.236641;ABP=160.848;RUN=1;RPP=5.25182;RPPR=0.0;RPL=35.0;RPR=27.0;EPP=9.87495;EPPR=0.0;DPRA=0.0;ODDS=179.499;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.93;QD=30.465;RPA=10;RU=G;SOR=2.131;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:118.1465:57:0:0:26:900:-170.058,-88.9307,-81.114:27:48:56:0,28:2003,1262,1170:1:.:1:.:.:.:-0.00174608	./1:118.1465:226:0:0:36:1259:-687.692,-575.701,-565.167:38:18:208:0,40:8019,5610,2147483647:.:1:1:.:.:.:3.01261e-05
chr2	231120255	.	CGG	C	8157.405	REJECT	NS=2;DP=252;DPB=254.133;AC=2;AN=2;AF=0.25;RO=0;AO=3;PRO=5.5;PAO=4.5;QR=0;QA=112;PQR=198.083;PQA=160.583;SRF=0;SRR=0;SAF=0;SAR=3;SRP=0.0;SAP=9.52472;AB=0.0566038;ABP=93.5156;RUN=1;RPP=9.52472;RPPR=0.0;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=0.0;DPRA=0.0;ODDS=179.499;GTI=0;TYPE=del;CIGAR=1M2D12M;NUMALT=3;MEANALT=4.0;LEN=2;MQM=56.3333;MQMR=0.0;PAIRED=0.666667;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.93;QD=30.465;RPA=10;RU=G;SOR=2.131;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:118.1465:57:0:0:3:112:-170.058,-161.903,-173.515:18:30:56:0,33:2003,724,681:1:.:.:.:.:.:-0.00174608	./1:118.1465:226:0:0:0:0:-687.692,-687.692,-687.692:85:40:208:0,171:8019,1114,597:.:1:.:.:.:.:3.01261e-05
chr2	231120256	.	GGG	T	8333.08	REJECT	NS=2;DP=262;DPB=254.133;AC=2;AN=2;AF=0.5;RO=0;AO=192;PRO=5.5;PAO=32.5;QR=0;QA=7078;PQR=198.083;PQA=1125.25;SRF=0;SRR=0;SAF=62;SAR=130;SRP=0.0;SAP=55.3066;AB=0.732824;ABP=126.37;RUN=1;RPP=38.4777;RPPR=0.0;RPL=124.0;RPR=68.0;EPP=11.8771;EPPR=0.0;DPRA=0.0;ODDS=179.499;GTI=0;TYPE=complex;CIGAR=1M2D1X11M;NUMALT=3;MEANALT=5.0;LEN=13;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:137.293:53:0:0:23:889:-170.058,-81.1273,-137.836:23:44:52:.:.:1:.:.:.:-0.00174608	./1:137.293:209:0:0:169:6189:-687.692,-111.991,-88.2308:169:82:205:.:.:1:.:.:.:3.01261e-05
chr2	231120258	.	G	T	3810.2700000000004	PASS	DP=152;AC=2;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=1.7645;Dels=0.0;FS=2.9735;HaplotypeScore=65.4872;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.006;QD=21.36;ReadPosRankSum=2.283;SOR=0.8175;ClippingRankSum=1.676	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:39,30:69:99.0:1045,0,1459:30:43:69:1:.:.:.:.:.:-0.00174608	0/1:65,171:236:99.0:6632,0,2064:171:72:236:.:1:.:.:.:.:3.01261e-05
chr2	231149108	.	G	A	14041.599999999999	REJECT	NS=2;DP=366;DPB=415.0;AC=4;AN=4;AF=1.0;RO=1;AO=414;PRO=0.0;PAO=0.0;QR=40;QA=16078;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=208;SAR=206;SRP=5.18177;SAP=3.03128;AB=0.0;ABP=0.0;RUN=1;RPP=13.1648;RPPR=5.18177;RPL=229.0;RPR=185.0;EPP=40.0197;EPPR=5.18177;DPRA=0.0;ODDS=64.2156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8164;MQMR=60.0;PAIRED=0.995169;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.349;Dels=0.0;FS=1.5745;HaplotypeScore=5.8324;MLEAC=2;MLEAF=1.0;MQ=59.925;MQRankSum=1.307;QD=31.575;ReadPosRankSum=-0.37;SOR=0.652	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:96:3684:-331.614,-26.0134,0.0:96:100:96:0,96:3959,288,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:318:1:40:318:12394:-1108.57,-82.7913,0.0:317:100:318:1,317:13790,906,0:.:1:1:.:.:.:3.01261e-05
chr2	231157512	.	A	G	1124.02	REJECT	NS=2;DP=286;DPB=330.0;AC=2;AN=4;AF=0.5;RO=266;AO=64;PRO=0.0;PAO=0.0;QR=10165;QA=2336;PQR=0.0;PQA=0.0;SRF=92;SRR=174;SAF=18;SAR=46;SRP=57.9012;SAP=29.6108;AB=0.193939;ABP=271.51;RUN=1;RPP=5.18177;RPPR=12.4472;RPL=36.0;RPR=28.0;EPP=5.18177;EPPR=12.4472;DPRA=0.0;ODDS=45.5925;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6562;MQMR=59.9549;PAIRED=0.984375;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.3245;Dels=0.0;FS=4.544;HaplotypeScore=5.7932;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0.07;QD=7.635;ReadPosRankSum=-0.644;SOR=0.9155;ClippingRankSum=-0.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:50:1900:38:1359:-98.4884,0.0,-147.224:37:43:86:48,37:1201,0,1784:1:.:1:.:.:.:-0.00174608	0/1:129.501:242:216:8265:26:977:-22.3586,0.0,-677.911:26:11:242:216,26:385,0,8496:.:1:1:.:.:.:3.01261e-05
chr2	231157527	.	G	A	8393.28	REJECT	NS=2;DP=236;DPB=271.0;AC=4;AN=4;AF=1.0;RO=0;AO=270;PRO=0.0;PAO=0.0;QR=0;QA=9896;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=86;SAR=184;SRP=0.0;SAP=80.2504;AB=0.0;ABP=0.0;RUN=1;RPP=54.4822;RPPR=0.0;RPL=175.0;RPR=95.0;EPP=3.13898;EPPR=0.0;DPRA=0.0;ODDS=47.3011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9778;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=59.96;QD=30.53;SOR=1.95	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.1775:69:0:0:69:2505:-225.564,-18.6675,0.0:68:100:68:0,68:2726,202,0:1:.:1:.:.:.:-0.00174608	1/1:123.1775:201:0:0:201:7391:-664.848,-54.3386,0.0:201:100:201:0,201:8081,566,0:.:1:1:.:.:.:3.01261e-05
chr2	231175549	.	T	C	1473.05	REJECT	NS=1;DP=128;DPB=128.0;AC=1;AN=4;AF=0.5;RO=65;AO=62;PRO=0.0;PAO=0.0;QR=2470;QA=2372;PQR=0.0;PQA=0.0;SRF=27;SRR=38;SAF=23;SAR=39;SRP=7.05258;SAP=11.9764;AB=0.484375;ABP=3.28173;RUN=1;RPP=3.0103;RPPR=4.64726;RPL=31.0;RPR=31.0;EPP=6.51267;EPPR=8.65613;DPRA=0.0;ODDS=339.182;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=37.3226;MQMR=38.1385;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=2.113;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=39.17;MQRankSum=0.788;QD=17.06;ReadPosRankSum=-0.804;SOR=0.923;ClippingRankSum=-1.175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:65:2470:62:2372:-153.531,0.0,-164.705:59:49:122:60,57:2041,0,2185:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:3.01261e-05
chr2	234087815	.	C	CCCT	3191.63	REJECT	NS=2;DP=239;DPB=401.667;AC=2;AN=4;AF=0.5;RO=142;AO=127;PRO=8.5;PAO=8.5;QR=5421;QA=4521;PQR=295.5;PQA=295.5;SRF=37;SRR=105;SAF=32;SAR=95;SRP=73.7208;SAP=70.8731;AB=0.472119;ABP=4.82659;RUN=1;RPP=9.18275;RPPR=18.6694;RPL=73.0;RPR=54.0;EPP=17.3899;EPPR=3.56081;DPRA=0.0;ODDS=217.52;GTI=0;TYPE=ins;CIGAR=1M3I2M;NUMALT=1;MEANALT=1.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=0.992126;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=234087815;HOMLEN=0;SVLEN=3;SVTYPE=INS;BaseQRankSum=-1.573;FS=4.4765;MLEAC=1;MLEAF=0.5;MQ=60.095;MQRankSum=1.024;QD=23.745;ReadPosRankSum=-1.6655;SOR=0.9715;ClippingRankSum=-0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.1825:74:36:1361:37:1309:-98.098,0.0,-102.79:37:52:73:26,37:1519,0,1948:1:.:1:1:.:.:-0.00174608	0/1:121.1825:203:106:4060:90:3212:-235.908,0.0,-312.222:90:49:196:82,92:5861,0,6298:.:1:1:1:.:.:3.01261e-05
chr2	234590527	.	T	G	9962.58	REJECT	NS=2;DP=364;DPB=415.0;AC=2;AN=4;AF=0.5;RO=87;AO=328;PRO=0.0;PAO=0.0;QR=3339;QA=12433;PQR=0.0;PQA=0.0;SRF=43;SRR=44;SAF=174;SAR=154;SRP=3.03526;SAP=5.65844;AB=0.790361;ABP=306.917;RUN=1;RPP=6.82362;RPPR=3.63429;RPL=152.0;RPR=176.0;EPP=30.1272;EPPR=3.63429;DPRA=0.0;ODDS=100.353;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993902;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1465;Dels=0.0;FS=0.3795;HaplotypeScore=5.8979;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2405;QD=25.09;ReadPosRankSum=0.1615;SOR=0.674;ClippingRankSum=0.545	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:49:1899:50:1886:-142.928,0.0,-144.119:49:51:98:48,49:1571,0,1681:1:.:1:.:.:.:-0.00174608	0/1:129.501:315:38:1440:278:10547:-863.066,0.0,-44.0042:277:88:315:38,276:10791,0,676:.:1:1:.:.:.:3.01261e-05
chr2	234590969	.	A	G	4239.77	PASS	SOMATIC;DP=275;AC=1;AN=4;AF=0.5;MQ0=1;BaseQRankSum=-0.196;Dels=0.0;FS=1.472;HaplotypeScore=147.73;MLEAC=1;MLEAF=0.5;MQ=52.96;MQRankSum=-0.625;QD=15.42;ReadPosRankSum=3.211;SOR=0.585	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:153,122:275:99.0:4268,0,5638:122:44:275:.:1:.:.:.:.:3.01261e-05
chr2	234590969	.	AT	GG	2178.77	PASS	DP=96;AC=1;AN=4;AF=0.5;JOINED;BaseQRankSum=0.262;FS=6.647;MLEAC=1;MLEAF=0.5;MQ=55.77;MQRankSum=-4.258;QD=22.7;ReadPosRankSum=0.181;SOR=0.305;ClippingRankSum=-0.86	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:42,54:96:99.0:2207,0,2813:54:56:96:1:.:.:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:3.01261e-05
chr2	234590969	.	ATGACCG	GGGACAA	6052.01	REJECT	NS=2;DP=345;DPB=354.857;AC=2;AN=3;AF=0.5;RO=87;AO=164;PRO=11.0;PAO=5.0;QR=3313;QA=6129;PQR=364.5;PQA=175.5;SRF=54;SRR=33;SAF=95;SAR=69;SRP=14.0174;SAP=11.961;AB=0.475362;ABP=4.8293;RUN=1;RPP=6.39992;RPPR=3.23494;RPL=90.0;RPR=74.0;EPP=9.41879;EPPR=7.22845;DPRA=0.0;ODDS=278.715;GTI=0;TYPE=complex;CIGAR=2X3M2X;NUMALT=2;MEANALT=2.0;LEN=7;MQM=50.1037;MQMR=59.4253;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:137.203:85:40:1515:44:1640:-131.266,0.0,-124.813:44:52:84:.:.:1:.:.:.:-0.00174608	./1:137.203:260:47:1798:120:4489:-485.155,-132.33,-293.782:120:46:260:.:.:1:.:.:.:3.01261e-05
chr2	234590970	.	T	G	8283.77	PASS	SOMATIC;DP=268;AC=1;AN=4;AF=0.5;MQ0=1;BaseQRankSum=-2.13;Dels=0.0;FS=1.268;HaplotypeScore=148.72;MLEAC=1;MLEAF=0.5;MQ=52.76;MQRankSum=-4.823;QD=30.91;ReadPosRankSum=2.633;SOR=0.823	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00174608	0/1:47,221:268:99.0:8312,0,1290:221:82:268:.:1:.:.:.:.:3.01261e-05
chr2	234590970	.	TGACCG	GGACAA	6052.01	PASS	SOMATIC;NS=2;DP=345;DPB=354.857;AC=2;AN=2;AF=0.25;RO=87;AO=93;PRO=11.0;PAO=11.0;QR=3313;QA=3424;PQR=364.5;PQA=408.0;SRF=54;SRR=33;SAF=55;SAR=38;SRP=14.0174;SAP=9.75821;AB=0.357692;ABP=48.7448;RUN=1;RPP=6.95631;RPPR=3.23494;RPL=40.0;RPR=53.0;EPP=8.26386;EPPR=7.22845;DPRA=0.0;ODDS=278.715;GTI=0;TYPE=complex;CIGAR=1M1X3M2X;NUMALT=2;MEANALT=2.0;LEN=7;MQM=49.2366;MQMR=59.4253;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:137.203:85:40:1515:0:0:-131.266,-135.989,-267.313:0:0:84:.:.:1:.:.:.:-0.00174608	./1:137.203:260:47:1798:93:3424:-485.155,-193.072,-327.471:93:36:260:.:.:1:.:.:.:3.01261e-05
chr2	234590974	.	CG	AA	5151.27	PASS	DP=181;AC=2;AN=4;AF=0.5;MQ0=1;JOINED;BaseQRankSum=1.9515;Dels=0.0;FS=2.924;HaplotypeScore=157.749;MLEAC=1;MLEAF=0.5;MQ=54.26;MQRankSum=-3.396;QD=26.545;ReadPosRankSum=2.1795;SOR=0.552;ClippingRankSum=1.347	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:41,56:97:99.0:2219,0,2832:56:58:97:1:.:.:.:.:.:-0.00174608	0/1:52,214:266:99.0:8140,0,1399:214:80:266:.:1:.:.:.:.:3.01261e-05
chr2	234665659	.	T	G	7052.58	REJECT	NS=2;DP=411;DPB=466.0;AC=2;AN=4;AF=0.5;RO=216;AO=250;PRO=0.0;PAO=0.0;QR=8233;QA=9447;PQR=0.0;PQA=0.0;SRF=97;SRR=119;SAF=114;SAR=136;SRP=7.87601;SAP=7.21427;AB=0.536481;ABP=8.39704;RUN=1;RPP=3.5662;RPPR=13.3047;RPL=121.0;RPR=129.0;EPP=3.14927;EPPR=4.01561;DPRA=0.0;ODDS=313.353;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.988;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.038;Dels=0.0;FS=0.774;HaplotypeScore=6.7989;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=0.022;QD=18.68;ReadPosRankSum=0.573;SOR=0.6385;ClippingRankSum=-0.663	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.823:109:49:1863:61:2253:-172.977,0.0,-137.908:61:55:109:47,61:1995,0,1674:1:.:1:.:.:.:-0.00174608	0/1:122.823:356:167:6370:189:7194:-550.643,0.0,-476.551:189:53:356:167,189:6964,0,6054:.:1:1:.:.:.:3.01261e-05
chr2	234665782	.	G	A	4474.0	REJECT	NS=2;DP=340;DPB=390.0;AC=2;AN=4;AF=0.5;RO=217;AO=173;PRO=0.0;PAO=0.0;QR=8155;QA=6493;PQR=0.0;PQA=0.0;SRF=103;SRR=114;SAF=65;SAR=108;SRP=4.22112;SAP=26.2187;AB=0.44359;ABP=13.7897;RUN=1;RPP=12.1606;RPPR=3.26047;RPL=100.0;RPR=73.0;EPP=13.5664;EPPR=3.26047;DPRA=0.0;ODDS=298.752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.2775;MQMR=59.8525;PAIRED=0.988439;PAIREDR=0.986175;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9295;Dels=0.0;FS=6.32;HaplotypeScore=4.8771;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=0.4045;QD=15.835;ReadPosRankSum=0.0545;SOR=0.9735;ClippingRankSum=-1.444	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.212:94:49:1744:49:1815:-137.199,0.0,-130.437:47:50:94:45,45:1603,0,1499:1:.:1:.:.:.:-0.00174608	0/1:118.212:291:168:6411:124:4678:-338.877,0.0,-497.599:123:42:291:168,123:4318,0,6292:.:1:1:.:.:.:3.01261e-05
chr2	234668879	.	C	CAT	2459.91	REJECT	NS=2;DP=252;DPB=329.278;AC=2;AN=4;AF=0.5;RO=146;AO=96;PRO=62.0;PAO=62.0;QR=5539;QA=3520;PQR=2245.0;PQA=2242.0;SRF=57;SRR=89;SAF=35;SAR=61;SRP=18.2404;SAP=18.3011;AB=0.365019;ABP=44.6316;RUN=1;RPP=10.339;RPPR=40.193;RPL=57.0;RPR=39.0;EPP=3.37221;EPPR=11.5772;DPRA=0.0;ODDS=150.241;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=1;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6535;FS=1.6325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.083;QD=10.235;RPA=7,8;RU=AT;ReadPosRankSum=0.337;SOR=0.6415;STR;ClippingRankSum=-0.313	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:37:1385:26:921:-65.5778,0.0,-110.868:28:43:64:36,30:869,0,1152:1:.:1:.:.:.:-0.00174608	0/1:129.501:218:109:4154:70:2599:-188.282,0.0,-324.965:73:39:186:117,77:2610,0,4299:.:1:1:.:.:.:3.01261e-05
chr2	235501364	.	A	G	1166.6	REJECT	NS=2;DP=238;DPB=266.0;AC=2;AN=4;AF=0.5;RO=205;AO=61;PRO=0.0;PAO=0.0;QR=7911;QA=2334;PQR=0.0;PQA=0.0;SRF=63;SRR=142;SAF=22;SAR=39;SRP=69.1184;SAP=13.2981;AB=0.229323;ABP=172.287;RUN=1;RPP=18.709;RPPR=79.5415;RPL=41.0;RPR=20.0;EPP=7.31765;EPPR=3.02089;DPRA=0.0;ODDS=112.497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0845;Dels=0.0;FS=2.6215;HaplotypeScore=3.9657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3035;QD=11.035;ReadPosRankSum=1.3415;SOR=0.4815;ClippingRankSum=-0.969	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:26:983:29:1130:-86.8892,0.0,-73.6373:29:53:55:26,29:1064,0,931:1:.:1:.:.:.:-0.00174608	0/1:129.501:211:179:6928:32:1204:-51.1585,0.0,-566.078:32:15:211:179,32:712,0,7114:.:1:1:.:.:.:3.01261e-05
chr2	240003870	.	G	A	1905.66	REJECT	NS=2;DP=355;DPB=408.0;AC=2;AN=4;AF=0.5;RO=312;AO=96;PRO=0.0;PAO=0.0;QR=11954;QA=3595;PQR=0.0;PQA=0.0;SRF=174;SRR=138;SAF=53;SAR=43;SRP=12.0303;SAP=5.27225;AB=0.235294;ABP=251.325;RUN=1;RPP=3.37221;RPPR=7.71516;RPL=50.0;RPR=46.0;EPP=10.339;EPPR=13.0603;DPRA=0.0;ODDS=140.863;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99359;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.071;Dels=0.0;FS=1.6;HaplotypeScore=6.8987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.157;QD=9.99;ReadPosRankSum=0.983;SOR=0.7845;ClippingRankSum=0.602	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9755:104:52:1981:54:2005:-151.76,0.0,-149.592:52:50:104:51,51:1775,0,1764:1:.:1:.:.:.:-0.00174608	0/1:117.9755:302:260:9973:42:1590:-61.2568,0.0,-815.233:42:14:302:260,42:889,0,10223:.:1:1:.:.:.:3.01261e-05
chr2	240016771	.	C	T	1572.08	PASS	SOMATIC;NS=2;DP=238;DPB=238.0;AC=1;AN=3;AF=0.25;RO=173;AO=65;PRO=0.0;PAO=0.0;QR=6630;QA=2438;PQR=0.0;PQA=0.0;SRF=32;SRR=141;SAF=14;SAR=51;SRP=152.139;SAP=48.7448;AB=0.343915;ABP=43.0045;RUN=1;RPP=3.84548;RPPR=15.0726;RPL=35.0;RPR=30.0;EPP=15.0703;EPPR=5.13156;DPRA=3.85714;ODDS=31.5735;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99422;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.04;Dels=0.0;FS=0.0;HaplotypeScore=5.9544;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.388;QD=11.23;ReadPosRankSum=0.53;SOR=0.639	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.933:48:49:1869:0:0:0.0,-13.2862,-168.42:0:0:48:48,0:.:0.0:0:.:.:.:0:.:.:0:-0.00174608	0/1:120.571:189:124:4761:65:2438:-168.164,0.0,-377.131:65:34:189:120,63:37.0:0.345:2:2150,0,4758:.:1:1:.:.:1:-10.1245
chr2	240029736	.	T	C	2794.25	REJECT	NS=1;DP=87;DPB=87.0;AC=2;AN=4;AF=1.0;RO=0;AO=87;PRO=0.0;PAO=0.0;QR=0;QA=3195;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=58;SAR=29;SRP=0.0;SAP=24.0012;AB=0.0;ABP=0.0;RUN=1;RPP=26.9963;RPPR=0.0;RPL=28.0;RPR=59.0;EPP=3.23494;EPPR=0.0;DPRA=0.0;ODDS=57.8537;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9655;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.26;SOR=1.501	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:85:0:0:87:3195:-287.191,-23.1255,0.0:85:100:85:0,84:3419,251,0:1:.:1:.:.:.:-0.00174608	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-10.1245
chr2	240061400	.	C	T	5610.6	REJECT	NS=2;DP=345;DPB=394.0;AC=2;AN=4;AF=0.5;RO=197;AO=197;PRO=0.0;PAO=0.0;QR=7511;QA=7550;PQR=0.0;PQA=0.0;SRF=123;SRR=74;SAF=117;SAR=80;SRP=29.4758;SAP=18.1004;AB=0.5;ABP=3.0103;RUN=1;RPP=3.55041;RPPR=4.87314;RPL=102.0;RPR=95.0;EPP=3.55041;EPPR=13.6031;DPRA=0.0;ODDS=290.04;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994924;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1665;Dels=0.0;FS=2.8125;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.22;QD=16.775;ReadPosRankSum=-0.2045;SOR=0.693;ClippingRankSum=-0.759	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.636:96:53:2034:44:1704:-127.089,0.0,-156.798:43:45:96:52,43:1427,0,1847:1:.:1:.:.:.:-0.00174608	0/1:117.636:296:144:5477:153:5846:-445.41,0.0,-412.229:152:51:296:144,152:5601,0,5250:.:1:1:.:.:.:-10.1245
chr2	240066417	.	A	G	8360.03	REJECT	NS=2;DP=223;DPB=256.0;AC=4;AN=4;AF=1.0;RO=0;AO=256;PRO=0.0;PAO=0.0;QR=0;QA=9833;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=206;SRP=0.0;SAP=209.436;AB=0.0;ABP=0.0;RUN=1;RPP=54.6167;RPPR=0.0;RPL=167.0;RPR=89.0;EPP=5.75857;EPPR=0.0;DPRA=0.0;ODDS=45.5235;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996094;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.77;SOR=2.7755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:65:0:0:66:2511:-226.153,-17.8955,0.0:65:100:65:0,65:2728,195,0:1:.:1:.:.:.:-0.00174608	1/1:129.501:190:0:0:190:7322:-658.739,-51.4833,0.0:190:100:190:0,190:8214,569,0:.:1:1:.:.:.:-10.1245
chr2	241713646	.	A	G	5790.43	REJECT	NS=2;DP=325;DPB=361.0;AC=2;AN=4;AF=0.5;RO=159;AO=202;PRO=0.0;PAO=0.0;QR=6135;QA=7694;PQR=0.0;PQA=0.0;SRF=50;SRR=109;SAF=72;SAR=130;SRP=50.5505;SAP=39.1728;AB=0.559557;ABP=14.1323;RUN=1;RPP=3.0103;RPPR=9.03306;RPL=101.0;RPR=101.0;EPP=7.31025;EPPR=19.7402;DPRA=0.0;ODDS=145.916;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2865;Dels=0.0;FS=1.386;HaplotypeScore=7.9267;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.211;QD=21.595;ReadPosRankSum=0.0785;SOR=0.6435;ClippingRankSum=0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.672:71:25:934:46:1767:-139.879,0.0,-64.8657:46:65:71:25,47:1713,0,822:1:.:1:.:.:.:-0.00174608	0/1:125.672:290:134:5201:156:5927:-454.562,0.0,-389.297:156:54:290:134,156:5766,0,4962:.:1:1:.:.:.:0.000259346
chr3	10074145	.	G	T	594.711	REJECT	NS=2;DP=40;DPB=47.0;AC=2;AN=4;AF=0.5;RO=18;AO=29;PRO=0.0;PAO=0.0;QR=496;QA=1025;PQR=0.0;PQA=0.0;SRF=3;SRR=15;SAF=3;SAR=26;SRP=20.3821;SAP=42.621;AB=0.617021;ABP=8.60069;RUN=1;RPP=57.5966;RPPR=15.074;RPL=28.0;RPR=1.0;EPP=49.8093;EPPR=20.3821;DPRA=0.0;ODDS=15.1346;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.944444;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.359;Dels=0.0;FS=0.0;HaplotypeScore=1.9443;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.691;QD=24.275;ReadPosRankSum=1.516;SOR=0.9915;ClippingRankSum=-1.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:71.86445:13:4:119:10:377:-30.3604,0.0,-6.96839:10:78:13:2,11:424,0,78:1:.:1:.:.:.:-0.002757	0/1:129.501:33:14:377:19:648:-49.9677,0.0,-25.0864:19:58:33:14,19:626,0,266:.:1:1:.:.:.:-0.0187789
chr3	10074152	.	AT	GG	719.034	REJECT	SOMATIC;NS=2;DP=41;DPB=41.0;AC=1;AN=3;AF=0.0;RO=9;AO=2;PRO=0.0;PAO=0.0;QR=299;QA=28;PQR=0.0;PQA=0.0;SRF=2;SRR=7;SAF=0;SAR=2;SRP=9.04217;SAP=7.35324;AB=0.0689655;ABP=49.8093;RUN=1;RPP=7.35324;RPPR=9.04217;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=22.5536;DPRA=2.41667;ODDS=3.79834;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=2;MEANALT=2.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:16.1589:12:1:30:0:0:-31.2971,-31.5702,-34.0213:0:0:12:.:.:.:.:.:.:-0.002757	./1:107.62:29:8:269:2:28:-54.2293,-54.4175,-76.023:2:7:29:.:.:1:.:.:.:-0.0187789
chr3	10074153	.	T	G	719.034	REJECT	NS=2;DP=35;DPB=41.0;AC=3;AN=4;AF=0.625;RO=9;AO=30;PRO=0.0;PAO=0.0;QR=299;QA=1057;PQR=0.0;PQA=0.0;SRF=2;SRR=7;SAF=4;SAR=26;SRP=9.04217;SAP=38.0434;AB=0.655172;ABP=9.07545;RUN=1;RPP=38.0434;RPPR=9.04217;RPL=26.0;RPR=4.0;EPP=26.4622;EPPR=22.5536;DPRA=0.0;ODDS=3.79834;GTI=0;TYPE=snp;CIGAR=1M1X;NUMALT=2;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.966667;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.374;Dels=0.0;FS=4.326;HaplotypeScore=8.7171;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.266;QD=28.155;ReadPosRankSum=0.598;SOR=2.259;ClippingRankSum=1.182	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:51.07945:12:1:30:11:375:-31.2971,-0.53883,0.0:10:87:12:2,10:390,0,86:1:.:1:.:.:.:-0.002757	0/1:103.31:29:8:269:19:682:-54.2293,0.0,-16.9569:20:69:29:8,21:787,0,226:.:1:1:.:.:.:-0.0187789
chr3	10076842	.	CTT	C	4047.835	REJECT	NS=2;DP=265;DPB=321.333;AC=2;AN=4;AF=0.5;RO=128;AO=150;PRO=54.5;PAO=45.5;QR=4789;QA=5680;PQR=1878.0;PQA=1548.0;SRF=92;SRR=36;SAF=106;SAR=44;SRP=56.2114;SAP=58.6579;AB=0.498339;ABP=3.01751;RUN=1;RPP=28.5468;RPPR=30.1537;RPL=54.0;RPR=96.0;EPP=28.5468;EPPR=4.09604;DPRA=0.0;ODDS=252.018;GTI=0;TYPE=del;CIGAR=1M2D12M;NUMALT=1;MEANALT=6.5;LEN=2;MQM=60.4;MQMR=60.0;PAIRED=0.993333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.295;FS=0.759;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.826;QD=16.55;RPA=10,8;RU=T;ReadPosRankSum=0.8335;SOR=0.6395;STR;ClippingRankSum=-0.112	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:38:1428:44:1644:-125.213,0.0,-112.801:45:53:85:42,46:1558,0,1287:1:.:1:.:.:.:-0.002757	0/1:129.501:222:90:3361:106:4036:-308.078,0.0,-270.065:108:53:203:101,110:3967,0,3274:.:1:1:.:.:.:-0.0187789
chr3	10077955	.	A	G	5246.795	REJECT	NS=2;DP=312;DPB=356.0;AC=2;AN=4;AF=0.5;RO=165;AO=188;PRO=0.0;PAO=0.0;QR=6153;QA=7067;PQR=0.0;PQA=0.0;SRF=102;SRR=63;SAF=126;SAR=62;SRP=23.0273;SAP=50.3207;AB=0.52809;ABP=5.45016;RUN=1;RPP=17.9796;RPPR=14.0782;RPL=76.0;RPR=112.0;EPP=4.67356;EPPR=11.2356;DPRA=0.0;ODDS=247.151;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984043;PAIREDR=0.993939;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1155;Dels=0.0;FS=2.5985;HaplotypeScore=13.5745;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0005;QD=18.08;ReadPosRankSum=0.378;SOR=0.9315;ClippingRankSum=0.966	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2225:85:41:1448:44:1647:-125.289,0.0,-107.352:43:51:84:41,43:1454,0,1265:1:.:1:.:.:.:-0.002757	0/1:121.2225:269:124:4705:144:5420:-414.965,0.0,-350.678:144:54:268:124,144:5244,0,4452:.:1:1:.:.:.:-0.0187789
chr3	10081545	.	G	C	5413.14	REJECT	NS=2;DP=362;DPB=418.0;AC=2;AN=4;AF=0.5;RO=219;AO=199;PRO=0.0;PAO=0.0;QR=8468;QA=7617;PQR=0.0;PQA=0.0;SRF=82;SRR=137;SAF=70;SAR=129;SRP=33.0044;SAP=40.9947;AB=0.476077;ABP=5.08826;RUN=1;RPP=8.78271;RPPR=16.5845;RPL=111.0;RPR=88.0;EPP=4.85441;EPPR=3.49615;DPRA=0.0;ODDS=356.487;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974874;PAIREDR=0.995434;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.122;Dels=0.0;FS=6.7715;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.316;QD=16.735;ReadPosRankSum=-0.5795;SOR=0.6865;ClippingRankSum=-0.278	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:57:2193:53:2054:-155.053,0.0,-167.558:52:48:108:55,51:1786,0,1994:1:.:1:.:.:.:-0.002757	0/1:129.501:307:162:6275:146:5563:-416.939,0.0,-480.988:145:47:307:161,145:5241,0,6092:.:1:1:.:.:.:-0.0187789
chr3	10084224	.	C	T	3727.66	REJECT	NS=2;DP=254;DPB=293.0;AC=2;AN=4;AF=0.5;RO=151;AO=142;PRO=0.0;PAO=0.0;QR=5719;QA=5372;PQR=0.0;PQA=0.0;SRF=78;SRR=73;SAF=91;SAR=51;SRP=3.36982;SAP=27.4776;AB=0.484642;ABP=3.6106;RUN=1;RPP=50.9662;RPPR=40.4143;RPL=43.0;RPR=99.0;EPP=25.092;EPPR=53.0692;DPRA=0.0;ODDS=227.784;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986755;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1265;Dels=0.0;FS=7.4865;HaplotypeScore=9.7959;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1995;QD=17.89;ReadPosRankSum=0.229;SOR=1.407;ClippingRankSum=-0.708	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:35:1334:42:1581:-121.492,0.0,-99.2482:41:55:76:34,41:1467,0,1233:1:.:1:.:.:.:-0.002757	0/1:129.501:215:116:4385:100:3791:-282.562,0.0,-335.973:100:46:215:115,100:3597,0,4181:.:1:1:.:.:.:-0.0187789
chr3	10085536	.	A	G	2418.87	REJECT	NS=2;DP=364;DPB=393.0;AC=2;AN=4;AF=0.5;RO=271;AO=122;PRO=0.0;PAO=0.0;QR=10504;QA=4637;PQR=0.0;PQA=0.0;SRF=132;SRR=139;SAF=38;SAR=84;SRP=3.40293;SAP=40.6729;AB=0.310433;ABP=125.679;RUN=1;RPP=16.9647;RPPR=55.5824;RPL=75.0;RPR=47.0;EPP=16.9647;EPPR=63.6593;DPRA=0.0;ODDS=158.892;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=41.2951;MQMR=47.3948;PAIRED=1.0;PAIREDR=0.99262;technology.ILLUMINA=1.0;MQ0=29;BaseQRankSum=0.2145;Dels=0.0;FS=15.4935;HaplotypeScore=5.9588;MLEAC=1;MLEAF=0.5;MQ=47.105;MQRankSum=-2.476;QD=9.52;ReadPosRankSum=-1.3975;SOR=1.7;ClippingRankSum=-0.432	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:56:2174:30:1141:-71.9123,0.0,-155.37:29:36:82:50,29:953,0,1701:1:.:1:.:.:.:-0.002757	0/1:129.501:321:215:8330:92:3496:-182.323,0.0,-594.947:99:31:321:228,107:2485,0,7655:.:1:1:.:.:.:-0.0187789
chr3	10088239	.	G	A	701.77	PASS	DP=117;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.285;Dels=0.0;FS=3.681;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=-4.5975;QD=5.955;ReadPosRankSum=-0.8895;SOR=1.588;ClippingRankSum=-0.986	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49,13:62:99.0:395,0,2055:13:21:62:1:.:.:.:.:.:-0.002757	0/1:134,39:173:99.0:1065,0,5336:39:23:173:.:1:.:.:.:.:-0.0187789
chr3	10088239	.	GTTG	ATTA	1063.24	REJECT	NS=2;DP=236;DPB=241.0;AC=2;AN=4;AF=0.5;RO=184;AO=52;PRO=7.0;PAO=5.0;QR=7097;QA=1929;PQR=181.0;PQA=168.0;SRF=141;SRR=43;SAF=42;SAR=10;SRP=116.352;SAP=45.7716;AB=0.220339;ABP=163.331;RUN=1;RPP=69.8248;RPPR=82.3635;RPL=6.0;RPR=46.0;EPP=19.7139;EPPR=6.03148;DPRA=0.0;ODDS=56.0769;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=47.7692;MQMR=60.0;PAIRED=0.826923;PAIREDR=0.994565;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:144.58:62:49:1903:13:433:-30.9605,0.0,-156.937:13:21:62:.:.:1:.:.:.:-0.002757	0/1:144.58:174:135:5194:39:1496:-94.1016,0.0,-430.91:39:22:174:.:.:1:.:.:.:-0.0187789
chr3	10088242	.	G	A	770.27	PASS	DP=123;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-1.3655;Dels=0.0;FS=3.647;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=58.135;MQRankSum=-3.4705;QD=6.21;ReadPosRankSum=-1.2015;SOR=1.625;ClippingRankSum=0.12	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:51,14:65:99.0:428,0,2085:14:22:65:1:.:.:.:.:.:-0.002757	0/1:139,43:182:99.0:1169,0,5574:43:24:182:.:1:.:.:.:.:-0.0187789
chr3	10088266	.	G	T	2308.03	REJECT	NS=2;DP=315;DPB=363.0;AC=2;AN=4;AF=0.5;RO=257;AO=106;PRO=0.0;PAO=0.0;QR=9825;QA=4120;PQR=0.0;PQA=0.0;SRF=180;SRR=77;SAF=74;SAR=32;SRP=92.649;SAP=39.1469;AB=0.292011;ABP=139.406;RUN=1;RPP=62.7463;RPPR=13.3607;RPL=26.0;RPR=80.0;EPP=3.74778;EPPR=7.47998;DPRA=0.0;ODDS=86.5067;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=49.2075;MQMR=59.8444;PAIRED=0.773585;PAIREDR=0.992218;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.401;Dels=0.0;FS=2.0965;HaplotypeScore=2.9985;MLEAC=1;MLEAF=0.5;MQ=57.855;MQRankSum=-5.1715;QD=7.61;ReadPosRankSum=-0.2395;SOR=1.0185;ClippingRankSum=0.11	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9875:92:72:2718:21:806:-40.1667,0.0,-219.564:20:22:92:71,20:509,0,2545:1:.:1:.:.:.:-0.002757	0/1:117.9875:269:185:7107:85:3314:-206.222,0.0,-566.195:85:31:269:183,85:2691,0,7074:.:1:1:.:.:.:-0.0187789
chr3	10088299	.	C	T	2788.21	REJECT	NS=2;DP=367;DPB=424.0;AC=2;AN=4;AF=0.5;RO=282;AO=142;PRO=0.0;PAO=0.0;QR=10587;QA=5467;PQR=0.0;PQA=0.0;SRF=164;SRR=118;SAF=84;SAR=58;SRP=19.304;SAP=13.3477;AB=0.334906;ABP=103.39;RUN=1;RPP=4.53951;RPPR=3.0411;RPL=66.0;RPR=76.0;EPP=13.3477;EPPR=22.2609;DPRA=0.0;ODDS=118.238;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=42.3169;MQMR=55.2872;PAIRED=0.683099;PAIREDR=0.992908;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.503;Dels=0.0;FS=7.036;HaplotypeScore=3.9656;MLEAC=1;MLEAF=0.5;MQ=54.035;MQRankSum=-3.5775;QD=8.09;ReadPosRankSum=1.281;SOR=1.491;ClippingRankSum=1.113	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9905:106:78:2967:33:1252:-53.1117,0.0,-234.649:28:27:106:77,24:695,0,3208:1:.:1:.:.:.:-0.002757	0/1:117.9905:312:204:7620:109:4215:-233.751,0.0,-586.368:109:35:312:202,109:3009,0,7330:.:1:1:.:.:.:-0.0187789
chr3	10088308	.	T	C	2718.42	REJECT	NS=2;DP=381;DPB=440.0;AC=2;AN=4;AF=0.5;RO=294;AO=146;PRO=0.0;PAO=0.0;QR=11164;QA=5525;PQR=0.0;PQA=0.0;SRF=166;SRR=128;SAF=81;SAR=65;SRP=13.6756;SAP=6.81781;AB=0.331818;ABP=111.11;RUN=1;RPP=3.06979;RPPR=3.27619;RPL=74.0;RPR=72.0;EPP=18.2404;EPPR=16.0391;DPRA=0.0;ODDS=104.978;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=41.363;MQMR=54.0136;PAIRED=0.671233;PAIREDR=0.996599;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2995;Dels=0.0;FS=5.248;HaplotypeScore=4.9234;MLEAC=1;MLEAF=0.5;MQ=53.305;MQRankSum=-2.5645;QD=7.415;ReadPosRankSum=1.2895;SOR=1.306;ClippingRankSum=-0.383	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:85:3138:33:1219:-47.1703,0.0,-247.91:28:25:112:83,23:632,0,3258:1:.:1:.:.:.:-0.002757	0/1:129.501:321:209:8026:113:4306:-232.425,0.0,-615.982:113:35:321:208,113:2968,0,7849:.:1:1:.:.:.:-0.0187789
chr3	10088343	.	A	G	2107.17	REJECT	NS=2;DP=382;DPB=437.0;AC=2;AN=4;AF=0.5;RO=302;AO=135;PRO=0.0;PAO=0.0;QR=11519;QA=5203;PQR=0.0;PQA=0.0;SRF=138;SRR=164;SAF=61;SAR=74;SRP=7.87095;SAP=5.72866;AB=0.308924;ABP=141.592;RUN=1;RPP=14.7363;RPPR=3.47048;RPL=81.0;RPR=54.0;EPP=11.5193;EPPR=10.3732;DPRA=0.0;ODDS=90.0873;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=34.7037;MQMR=48.1192;PAIRED=0.674074;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=9;BaseQRankSum=2.0305;Dels=0.0;FS=5.185;HaplotypeScore=4.7187;MLEAC=1;MLEAF=0.5;MQ=47.45;MQRankSum=-4.128;QD=5.61;ReadPosRankSum=-0.453;SOR=0.8865;ClippingRankSum=-1.448	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:85:3174:33:1278:-39.478,0.0,-244.043:27:24:110:81,21:484,0,2957:1:.:1:.:.:.:-0.002757	0/1:129.501:323:217:8345:102:3925:-179.323,0.0,-622.764:103:32:323:222,105:2243,0,8005:.:1:1:.:.:.:-0.0187789
chr3	10088404	.	C	T	552.27	PASS	DP=150;AC=2;AN=4;AF=0.5;MQ0=24;BaseQRankSum=-0.296;Dels=0.0;FS=5.2825;HaplotypeScore=84.3551;MLEAC=1;MLEAF=0.5;MQ=39.395;MQRankSum=-2.807;QD=4.57;ReadPosRankSum=0.182;SOR=0.7205;ClippingRankSum=0.903	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:60,17:77:99.0:522,0,2502:17:22:77:1:.:.:.:.:.:-0.002757	0/1:181,43:224:99.0:639,0,6139:43:19:224:.:1:.:.:.:.:-0.0187789
chr3	10088404	.	CTTAGTAAG	TTTAT	424.691	REJECT	NS=2;DP=242;DPB=243.667;AC=2;AN=4;AF=0.5;RO=200;AO=42;PRO=32.0;PAO=6.0;QR=7704;QA=1510;PQR=1188.0;PQA=168.0;SRF=61;SRR=139;SAF=11;SAR=31;SRP=69.0665;SAP=23.691;AB=0.173554;ABP=227.013;RUN=1;RPP=8.18047;RPPR=42.0968;RPL=26.0;RPR=16.0;EPP=6.31921;EPPR=5.13834;DPRA=0.0;ODDS=34.5694;GTI=0;TYPE=complex;CIGAR=1X2M4D1M1X;NUMALT=1;MEANALT=1.0;LEN=5;MQM=35.1667;MQMR=39.67;PAIRED=0.97619;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:137.925:70:58:2213:12:456:-15.9946,0.0,-181.268:12:17:70:.:.:1:.:.:.:-0.002757	0/1:160.002:172:142:5491:30:1054:-34.4464,0.0,-467.128:30:17:172:.:.:1:.:.:.:-0.0187789
chr3	10088407	.	AG	A	481.73	PASS	DP=77;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.031;FS=9.225;MLEAC=1;MLEAF=0.5;MQ=40.43;MQRankSum=-2.731;QD=6.26;ReadPosRankSum=-0.96;SOR=0.142;ClippingRankSum=2.555	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61,16:77:99.0:519,0,2544:16:21:77:1:.:.:.:.:.:-0.002757	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0187789
chr3	10088409	.	TAAG	T	450.73	PASS	DP=77;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=0.245;FS=9.225;MLEAC=1;MLEAF=0.5;MQ=40.43;MQRankSum=-2.128;QD=5.85;ReadPosRankSum=-0.96;SOR=0.142;ClippingRankSum=0.421	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61,16:77:99.0:488,0,2513:16:21:77:1:.:.:.:.:.:-0.002757	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0187789
chr3	10088412	.	G	T	523.77	PASS	SOMATIC;DP=203;AC=1;AN=4;AF=0.5;MQ0=25;BaseQRankSum=0.045;Dels=0.0;FS=3.096;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=36.9;MQRankSum=-1.653;QD=2.58;ReadPosRankSum=2.326;SOR=1.137	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.002757	0/1:165,38:203:99.0:552,0,5493:38:19:203:.:1:.:.:.:.:-0.0187789
chr3	10088422	.	C	T	531.734	REJECT	NS=2;DP=197;DPB=217.0;AC=2;AN=4;AF=0.5;RO=175;AO=42;PRO=0.0;PAO=0.0;QR=6644;QA=1614;PQR=0.0;PQA=0.0;SRF=48;SRR=127;SAF=11;SAR=31;SRP=80.4512;SAP=23.691;AB=0.193548;ABP=180.02;RUN=1;RPP=19.7617;RPPR=72.8076;RPL=30.0;RPR=12.0;EPP=3.83753;EPPR=3.12198;DPRA=0.0;ODDS=35.9131;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=35.1667;MQMR=37.84;PAIRED=0.97619;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=25;BaseQRankSum=0.3675;Dels=0.0;FS=5.9875;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=36.93;MQRankSum=-1.044;QD=5.715;ReadPosRankSum=-0.4995;SOR=0.556;ClippingRankSum=-0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.879:64:52:1969:12:456:-15.6953,0.0,-143.159:14:22:64:49,16:521,0,2051:1:.:1:.:.:.:-0.002757	0/1:121.112:165:123:4675:30:1158:-46.3836,0.0,-328.396:34:20:165:140,38:714,0,4370:.:1:1:.:.:.:-0.0187789
chr3	10088443	.	C	A	307.77	PASS	DP=81;AC=2;AN=4;AF=0.5;MQ0=16;BaseQRankSum=1.0385;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=36.445;MQRankSum=-0.2195;QD=4.045;ReadPosRankSum=-0.605;SOR=0.536;ClippingRankSum=0.796	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:35,8:43:99.0:227,0,1420:8:19:43:1:.:.:.:.:.:-0.002757	0/1:95,25:120:99.0:445,0,3050:25:21:120:.:1:.:.:.:.:-0.0187789
chr3	10088443	.	CA	AG	232.403	REJECT	NS=2;DP=145;DPB=146.5;AC=2;AN=4;AF=0.5;RO=117;AO=28;PRO=3.0;PAO=0.0;QR=4475;QA=1063;PQR=105.0;PQA=0.0;SRF=30;SRR=87;SAF=7;SAR=21;SRP=63.3104;SAP=18.2106;AB=0.193103;ABP=121.633;RUN=1;RPP=63.8115;RPPR=101.914;RPL=28.0;RPR=0.0;EPP=18.2106;EPPR=8.37402;DPRA=0.0;ODDS=12.8704;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=34.9643;MQMR=37.3932;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55.8953:41:33:1239:8:293:-9.47437,0.0,-99.6997:8:20:41:.:.:1:.:.:.:-0.002757	0/1:138.499:104:84:3236:20:770:-29.2068,0.0,-226.872:20:19:104:.:.:1:.:.:.:-0.0187789
chr3	10088444	.	A	G	324.77	PASS	DP=80;AC=2;AN=4;AF=0.5;MQ0=16;BaseQRankSum=2.136;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=36.385;MQRankSum=0.4025;QD=4.365;ReadPosRankSum=-0.8175;SOR=0.5705;ClippingRankSum=-0.389	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:32,8:40:99.0:227,0,1420:8:20:40:1:.:.:.:.:.:-0.002757	0/1:95,25:120:99.0:479,0,3097:25:21:120:.:1:.:.:.:.:-0.0187789
chr3	10089723	.	G	A	2626.55	REJECT	NS=2;DP=306;DPB=351.0;AC=2;AN=4;AF=0.5;RO=242;AO=109;PRO=0.0;PAO=0.0;QR=9303;QA=4142;PQR=0.0;PQA=0.0;SRF=84;SRR=158;SAF=38;SAR=71;SRP=52.1466;SAP=24.7051;AB=0.310541;ABP=112.444;RUN=1;RPP=15.4614;RPPR=14.6393;RPL=67.0;RPR=42.0;EPP=13.5489;EPPR=14.6393;DPRA=0.0;ODDS=137.974;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.6055;MQMR=60.0;PAIRED=0.93578;PAIREDR=0.995868;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.673;Dels=0.0;FS=1.946;HaplotypeScore=7.7568;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=0.1145;QD=9.11;ReadPosRankSum=0.209;SOR=0.649;ClippingRankSum=1.134	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6905:85:62:2364:25:956:-61.5547,0.0,-189.246:24:29:85:60,24:737,0,2077:1:.:1:.:.:.:-0.002757	0/1:119.6905:263:180:6939:84:3186:-212.412,0.0,-552.676:83:31:263:180,82:2643,0,6984:.:1:1:.:.:.:-0.0187789
chr3	10089738	.	A	G	1818.55	REJECT	NS=2;DP=262;DPB=296.0;AC=2;AN=4;AF=0.5;RO=215;AO=81;PRO=0.0;PAO=0.0;QR=8279;QA=3089;PQR=0.0;PQA=0.0;SRF=64;SRR=151;SAF=23;SAR=58;SRP=79.4562;SAP=35.8505;AB=0.273649;ABP=134.737;RUN=1;RPP=35.8505;RPPR=16.837;RPL=58.0;RPR=23.0;EPP=3.03711;EPPR=8.35313;DPRA=0.0;ODDS=96.0939;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=56.7778;MQMR=60.0;PAIRED=0.938272;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5985;Dels=0.0;FS=0.626;HaplotypeScore=4.8769;MLEAC=1;MLEAF=0.5;MQ=59.14;MQRankSum=-1.0265;QD=8.02;ReadPosRankSum=1.6335;SOR=0.8065;ClippingRankSum=-0.008	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:64:48:1837:18:678:-42.3692,0.0,-147.549:17:27:64:46,17:534,0,1740:1:.:1:.:.:.:-0.002757	0/1:129.501:229:167:6442:63:2411:-151.651,0.0,-517.21:62:27:229:167,62:1920,0,6538:.:1:1:.:.:.:-0.0187789
chr3	10089749	.	T	C	1718.42	REJECT	NS=2;DP=218;DPB=245.0;AC=2;AN=4;AF=0.5;RO=171;AO=74;PRO=0.0;PAO=0.0;QR=6548;QA=2830;PQR=0.0;PQA=0.0;SRF=47;SRR=124;SAF=21;SAR=53;SRP=78.3007;SAP=33.0588;AB=0.302041;ABP=86.4037;RUN=1;RPP=41.0404;RPPR=12.2676;RPL=55.0;RPR=19.0;EPP=3.12768;EPPR=12.2676;DPRA=0.0;ODDS=83.8482;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=56.473;MQMR=60.0;PAIRED=0.945946;PAIREDR=0.994152;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.793;Dels=0.0;FS=0.0;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.5;MQ=58.955;MQRankSum=-0.943;QD=8.91;ReadPosRankSum=0.5075;SOR=0.6545;ClippingRankSum=0.686	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8705:52:39:1491:15:583:-36.5887,0.0,-119.683:14:27:52:37,14:452,0,1429:1:.:1:.:.:.:-0.002757	0/1:118.8705:191:132:5057:59:2247:-147.642,0.0,-403.233:59:31:191:132,59:1904,0,5082:.:1:1:.:.:.:-0.0187789
chr3	10091035	.	T	C	1506.29	REJECT	NS=2;DP=146;DPB=147.0;AC=2;AN=4;AF=0.5;RO=65;AO=82;PRO=0.0;PAO=0.0;QR=2475;QA=2997;PQR=0.0;PQA=0.0;SRF=44;SRR=21;SAF=63;SAR=19;SRP=20.6827;SAP=54.2782;AB=0.557823;ABP=7.27939;RUN=1;RPP=74.6159;RPPR=27.3642;RPL=15.0;RPR=67.0;EPP=20.9117;EPPR=3.31097;DPRA=0.0;ODDS=10.7702;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=31.4634;MQMR=54.3692;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=39;BaseQRankSum=-0.3735;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=43.87;MQRankSum=-5.273;QD=8.4;ReadPosRankSum=-0.3045;SOR=0.8035;ClippingRankSum=-0.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:72.88735:40:34:1290:7:255:-6.78701,0.0,-102.157:6:16:40:34,6:108,0,1290:1:.:1:.:.:.:-0.002757	0/1:118.9885:125:31:1185:75:2742:-164.073,0.0,-75.3956:94:75:125:31,114:2175,0,982:.:1:1:.:.:.:-0.0187789
chr3	10091049	.	C	T	313.92449999999997	REJECT	NS=2;DP=215;DPB=228.0;AC=2;AN=4;AF=0.5;RO=182;AO=46;PRO=0.0;PAO=0.0;QR=6916;QA=1612;PQR=0.0;PQA=0.0;SRF=124;SRR=58;SAF=36;SAR=10;SRP=54.9825;SAP=34.9215;AB=0.201754;ABP=179.166;RUN=1;RPP=40.0197;RPPR=87.1966;RPL=9.0;RPR=37.0;EPP=21.8927;EPPR=3.77389;DPRA=0.0;ODDS=38.3694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=30.2174;MQMR=42.456;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=40;BaseQRankSum=-0.542;Dels=0.0;FS=3.2415;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=42.415;MQRankSum=-3.589;QD=2.965;ReadPosRankSum=-1.7655;SOR=1.2295;ClippingRankSum=-0.306	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.5015:64:49:1837:16:583:-22.4335,0.0,-139.26:15:23:64:49,14:308,0,1762:1:.:1:.:.:.:-0.002757	0/1:119.2245:183:133:5079:30:1029:-24.2576,0.0,-337.691:37:20:183:158,45:331,0,4397:.:1:1:.:.:.:-0.0187789
chr3	10091153	.	C	T	320.473	REJECT	NS=2;DP=354;DPB=394.0;AC=2;AN=4;AF=0.5;RO=342;AO=52;PRO=0.0;PAO=0.0;QR=12951;QA=2009;PQR=0.0;PQA=0.0;SRF=140;SRR=202;SAF=49;SAR=3;SRP=27.4171;SAP=91.3725;AB=0.13198;ABP=466.515;RUN=1;RPP=3.17734;RPPR=7.98818;RPL=27.0;RPR=25.0;EPP=3.67845;EPPR=3.41666;DPRA=0.0;ODDS=17.7361;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=35.9615;MQMR=42.1287;PAIRED=1.0;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=21;BaseQRankSum=3.0615;Dels=0.0;FS=64.074;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=44.01;MQRankSum=-3.026;QD=2.07;ReadPosRankSum=0.5945;SOR=4.2835;ClippingRankSum=-0.349	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:88.01345:92:86:3240:12:464:-10.3986,0.0,-216.538:11:12:92:75,11:200,0,2467:1:.:1:.:.:.:-0.002757	0/1:129.501:305:256:9711:40:1545:-37.2573,0.0,-668.068:50:16:305:254,60:701,0,8370:.:1:1:.:.:.:-0.0187789
chr3	10094206	.	A	AT	1279.45	REJECT	NS=2;DP=155;DPB=207.889;AC=2;AN=4;AF=0.5;RO=61;AO=61;PRO=25.6667;PAO=23.1667;QR=2265;QA=2172;PQR=903.917;PQA=812.417;SRF=18;SRR=43;SAF=15;SAR=46;SRP=25.259;SAP=37.2199;AB=0.393548;ABP=18.2666;RUN=1;RPP=21.8416;RPPR=62.8504;RPL=42.0;RPR=19.0;EPP=3.33068;EPPR=3.90025;DPRA=0.0;ODDS=63.7064;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=57.918;MQMR=59.1639;PAIRED=1.0;PAIREDR=0.967213;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.1765;FS=2.0375;MLEAC=1;MLEAF=0.5;MQ=58.265;MQRankSum=-1.428;QD=4.98;RPA=13,14;RU=T;ReadPosRankSum=-0.498;SOR=1.2485;STR;ClippingRankSum=-1.554	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.007:31:14:519:13:425:-33.614,0.0,-38.5815:14:47:31:15,16:293,0,235:1:.:1:.:.:.:-0.002757	0/1:116.007:154:47:1746:48:1747:-138.133,0.0,-145.499:55:44:124:68,63:986,0,1061:.:1:1:.:.:.:-0.0187789
chr3	10094206	.	A	ATT	1610.17	REJECT	NS=2;DP=155;DPB=207.889;AC=2;AN=2;AF=0.0;RO=61;AO=11;PRO=25.6667;PAO=21.1667;QR=2265;QA=361;PQR=903.917;PQA=738.417;SRF=18;SRR=43;SAF=4;SAR=7;SRP=25.259;SAP=4.78696;AB=0.0709677;ABP=250.824;RUN=1;RPP=12.6832;RPPR=62.8504;RPL=9.0;RPR=2.0;EPP=4.78696;EPPR=3.90025;DPRA=0.0;ODDS=63.7064;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=3;MEANALT=6.0;LEN=2;MQM=57.1818;MQMR=59.1639;PAIRED=1.0;PAIREDR=0.967213;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.014:32:14:519:1:14:-33.614,-36.4214,-78.5048:1:3:31:.:.:1:.:.:.:-0.002757	./1:133.014:123:47:1746:10:347:-138.133,-118.781,-274.848:10:8:118:.:.:1:.:.:.:-0.0187789
chr3	10094206	.	AT	A	1610.17	REJECT	NS=2;DP=155;DPB=207.889;AC=2;AN=2;AF=0.0;RO=61;AO=16;PRO=25.6667;PAO=20.0;QR=2265;QA=599;PQR=903.917;PQA=670.25;SRF=18;SRR=43;SAF=4;SAR=12;SRP=25.259;SAP=11.6962;AB=0.103226;ABP=214.96;RUN=1;RPP=11.6962;RPPR=62.8504;RPL=12.0;RPR=4.0;EPP=5.18177;EPPR=3.90025;DPRA=0.0;ODDS=63.7064;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=59.1639;PAIRED=1.0;PAIREDR=0.967213;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.014:32:14:519:3:118:-33.614,-29.0505,-111.631:3:10:31:.:.:1:.:.:.:-0.002757	./1:133.014:123:47:1746:13:481:-138.133,-113.393,-348.773:13:11:118:.:.:1:.:.:.:-0.0187789
chr3	10103811	.	TA	T	2614.21	PASS	SOMATIC;NS=2;DP=309;DPB=324.538;AC=1;AN=4;AF=0.25;RO=201;AO=100;PRO=27.0;PAO=24.0;QR=7607;QA=3767;PQR=996.0;PQA=879.0;SRF=128;SRR=73;SAF=69;SAR=31;SRP=35.6904;SAP=34.3664;AB=0.421941;ABP=15.5535;RUN=1;RPP=41.3151;RPPR=73.891;RPL=29.0;RPR=71.0;EPP=6.13722;EPPR=38.1104;DPRA=3.29167;ODDS=44.0678;GTI=0;TYPE=del;CIGAR=1M1D11M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=59.36;MQMR=59.0348;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.998;FS=2.384;MLEAC=1;MLEAF=0.5;MQ=59.08;MQRankSum=2.785;QD=10.33;RPA=9,8;RU=A;ReadPosRankSum=-0.582;SOR=0.883;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:137.036:72:68:2554:0:0:0.0,-18.7124,-233.4:0:0:68:.:.:.:.:0:.:.:.:-0.002757	0/1:118.018:238:133:5053:100:3767:-273.996,0.0,-396.386:100:42:235:137,100:2506,0,3486:.:1:1:.:.:.:-0.0187789
chr3	10106144	.	C	T	65.9522	REJECT	NS=2;DP=327;DPB=327.0;AC=1;AN=4;AF=0.25;RO=293;AO=32;PRO=0.0;PAO=0.0;QR=11317;QA=1221;PQR=0.0;PQA=0.0;SRF=120;SRR=173;SAF=25;SAR=7;SRP=23.8283;SAP=24.9965;AB=0.180723;ABP=76.5003;RUN=1;RPP=20.3821;RPPR=94.3233;RPL=24.0;RPR=8.0;EPP=5.45321;EPPR=3.37345;DPRA=0.0;ODDS=15.186;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=25.5938;MQMR=58.3208;PAIRED=1.0;PAIREDR=0.993174;technology.ILLUMINA=1.0;BaseQRankSum=1.887;FS=31.183;MLEAC=1;MLEAF=0.5;MQ=54.92;MQRankSum=-5.477;QD=2.43;ReadPosRankSum=-0.862;SOR=3.593;ClippingRankSum=-0.178	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:82.4761:79:67:2582:15:581:-13.0403,0.0,-209.823:13:17:79:64,12:215,0,2490:1:.:1:.:.:.:-0.002757	0/0:148.62:244:226:8735:17:640:0.0,-31.2795,-750.033:17:7:243:.:.:.:.:0:.:.:.:-0.0187789
chr3	10106532	.	C	T	3479.49	REJECT	NS=2;DP=347;DPB=397.0;AC=2;AN=4;AF=0.5;RO=248;AO=149;PRO=0.0;PAO=0.0;QR=9426;QA=5727;PQR=0.0;PQA=0.0;SRF=97;SRR=151;SAF=67;SAR=82;SRP=28.5426;SAP=6.28937;AB=0.375315;ABP=56.6189;RUN=1;RPP=17.0156;RPPR=34.5317;RPL=90.0;RPR=59.0;EPP=3.02487;EPPR=4.72646;DPRA=0.0;ODDS=160.129;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=39.8523;MQMR=53.9274;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=4;BaseQRankSum=0.9195;Dels=0.0;FS=4.8385;HaplotypeScore=4.8797;MLEAC=1;MLEAF=0.5;MQ=50.525;MQRankSum=-8.0855;QD=11.17;ReadPosRankSum=-0.525;SOR=0.4;ClippingRankSum=-0.372	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:72:2714:32:1210:-70.9187,0.0,-203.122:31:30:102:70,30:945,0,2388:1:.:1:.:.:.:-0.002757	0/1:129.501:295:176:6712:117:4517:-284.616,0.0,-505.961:119:40:295:176,121:3939,0,6373:.:1:1:.:.:.:-0.0187789
chr3	10107520	.	G	T	3683.815	REJECT	NS=2;DP=228;DPB=265.0;AC=2;AN=4;AF=0.5;RO=128;AO=137;PRO=0.0;PAO=0.0;QR=4916;QA=5188;PQR=0.0;PQA=0.0;SRF=78;SRR=50;SAF=86;SAR=51;SRP=16.3106;SAP=22.4268;AB=0.516981;ABP=3.67403;RUN=1;RPP=96.9859;RPPR=35.8538;RPL=30.0;RPR=107.0;EPP=3.02615;EPPR=3.0103;DPRA=0.0;ODDS=213.028;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=50.8102;MQMR=52.1094;PAIRED=1.0;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6205;Dels=0.0;FS=4.554;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.5;MQ=51.865;MQRankSum=-3.3955;QD=18.795;ReadPosRankSum=0.566;SOR=1.042;ClippingRankSum=-0.063	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.566:71:34:1292:38:1410:-106.418,0.0,-94.5664:38:53:71:33,38:1369,0,1116:1:.:1:.:.:.:-0.002757	0/1:120.566:192:94:3624:99:3778:-283.707,0.0,-268.384:99:51:192:93,99:3671,0,3449:.:1:1:.:.:.:-0.0187789
chr3	10133949	.	A	G	4420.16	REJECT	NS=2;DP=306;DPB=349.0;AC=2;AN=4;AF=0.5;RO=190;AO=159;PRO=0.0;PAO=0.0;QR=7224;QA=6101;PQR=0.0;PQA=0.0;SRF=74;SRR=116;SAF=50;SAR=109;SRP=23.1707;SAP=50.5505;AB=0.455587;ABP=8.98963;RUN=1;RPP=16.1347;RPPR=19.5135;RPL=95.0;RPR=64.0;EPP=6.08314;EPPR=4.15318;DPRA=0.0;ODDS=221.362;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5785;Dels=0.0;FS=4.6055;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.263;QD=15.655;ReadPosRankSum=0.4075;SOR=1.0775;ClippingRankSum=1.605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7985:83:50:1915:35:1341:-97.6942,0.0,-149.361:34:41:83:48,34:1182,0,1774:1:.:1:.:.:.:-0.002757	0/1:119.7985:264:140:5309:124:4760:-356.677,0.0,-406.063:124:47:264:140,124:4580,0,5114:.:1:1:.:.:.:-0.0187789
chr3	10138069	.	T	G	6165.995000000001	REJECT	NS=2;DP=375;DPB=427.0;AC=2;AN=4;AF=0.5;RO=205;AO=222;PRO=0.0;PAO=0.0;QR=7838;QA=8591;PQR=0.0;PQA=0.0;SRF=112;SRR=93;SAF=138;SAR=84;SRP=6.83421;SAP=31.5329;AB=0.519906;ABP=4.47999;RUN=1;RPP=3.36243;RPPR=14.5456;RPL=108.0;RPR=114.0;EPP=27.4638;EPPR=6.83421;DPRA=0.0;ODDS=254.151;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990991;PAIREDR=0.990244;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.528;Dels=0.0;FS=5.4995;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.088;QD=19.6;ReadPosRankSum=0.894;SOR=1.097;ClippingRankSum=-0.516	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6175:103:40:1545:64:2467:-193.851,0.0,-110.881:63:62:103:39,63:2213,0,1294:1:.:1:.:.:.:-0.002757	0/1:118.6175:323:165:6293:158:6124:-463.345,0.0,-478.531:158:49:323:165,158:5903,0,6022:.:1:1:.:.:.:-0.0187789
chr3	10138189	.	T	C	3224.22	REJECT	NS=2;DP=192;DPB=214.0;AC=2;AN=4;AF=0.5;RO=100;AO=114;PRO=0.0;PAO=0.0;QR=3732;QA=4404;PQR=0.0;PQA=0.0;SRF=30;SRR=70;SAF=35;SAR=79;SRP=37.7539;SAP=39.8872;AB=0.53271;ABP=4.99913;RUN=1;RPP=62.7448;RPPR=45.05;RPL=85.0;RPR=29.0;EPP=6.74371;EPPR=3.35774;DPRA=0.0;ODDS=139.502;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8055;Dels=0.01;FS=0.0;HaplotypeScore=5.8016;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3205;QD=19.09;ReadPosRankSum=1.129;SOR=0.6645;ClippingRankSum=0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0245:44:22:833:23:886:-67.656,0.0,-62.8666:23:51:44:21,23:818,0,745:1:.:1:.:.:.:-0.002757	0/1:120.0245:169:78:2899:91:3518:-270.752,0.0,-215.064:91:54:169:78,91:3468,0,2728:.:1:1:.:.:.:-0.0187789
chr3	12009829	.	G	A	2053.2200000000003	REJECT	NS=2;DP=382;DPB=432.0;AC=2;AN=4;AF=0.5;RO=331;AO=101;PRO=0.0;PAO=0.0;QR=12762;QA=3889;PQR=0.0;PQA=0.0;SRF=149;SRR=182;SAF=42;SAR=59;SRP=10.1545;SAP=9.22372;AB=0.233796;ABP=268.915;RUN=1;RPP=4.75178;RPPR=3.06934;RPL=46.0;RPR=55.0;EPP=6.64375;EPPR=3.17431;DPRA=0.0;ODDS=159.211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=0.996979;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5445;Dels=0.0;FS=9.0365;HaplotypeScore=9.6304;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4825;QD=11.185;ReadPosRankSum=-0.067;SOR=1.0305;ClippingRankSum=-1.502	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2335:96:43:1690:55:2111:-163.453,0.0,-125.551:54:56:96:42,53:1873,0,1521:1:.:1:.:.:.:-0.002757	0/1:120.2335:333:288:11072:46:1778:-69.4709,0.0,-905.371:46:14:333:287,46:1012,0,11310:.:1:1:.:.:.:-0.0187789
chr3	12641518	.	A	G	11906.0	REJECT	NS=2;DP=453;DPB=516.0;AC=2;AN=4;AF=0.5;RO=128;AO=387;PRO=0.0;PAO=0.0;QR=4926;QA=14875;PQR=0.0;PQA=0.0;SRF=57;SRR=71;SAF=177;SAR=210;SRP=6.33537;SAP=9.12072;AB=0.75;ABP=283.13;RUN=1;RPP=9.12072;RPPR=3.62103;RPL=210.0;RPR=177.0;EPP=4.63189;EPPR=5.45321;DPRA=0.0;ODDS=258.278;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997416;PAIREDR=0.976562;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.231;Dels=0.0;FS=1.5445;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5815;QD=24.75;ReadPosRankSum=-0.02;SOR=0.718;ClippingRankSum=-0.902	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:64:2487:60:2314:-174.637,0.0,-190.202:59:48:123:63,59:2071,0,2220:1:.:1:.:.:.:-0.002757	0/1:129.501:390:64:2439:327:12561:-1023.82,0.0,-113.49:326:84:390:64,326:12804,0,1554:.:1:1:.:.:.:-0.0187789
chr3	12642949	.	T	C	4012.28	PASS	SOMATIC;NS=2;DP=539;DPB=539.0;AC=1;AN=3;AF=0.25;RO=390;AO=149;PRO=0.0;PAO=0.0;QR=15071;QA=5748;PQR=0.0;PQA=0.0;SRF=208;SRR=182;SAF=71;SAR=78;SRP=6.77419;SAP=3.72441;AB=0.366995;ABP=65.3947;RUN=1;RPP=5.47325;RPPR=3.09939;RPL=68.0;RPR=81.0;EPP=3.37464;EPPR=3.36664;DPRA=3.05263;ODDS=83.9998;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.573;Dels=0.0;FS=4.254;HaplotypeScore=10.7537;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.964;QD=12.81;ReadPosRankSum=-0.738;SOR=0.644	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:129:133:5140:0:0:0.0,-36.0547,-462.556:0:0:129:125,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:129.501:406:257:9931:149:5748:-407.011,0.0,-783.185:149:37:406:248,144:38.0:0.367:2:5228,0,9886:.:1:1:.:.:1:-0.0187789
chr3	12643013	.	A	G	3382.39	PASS	SOMATIC;NS=2;DP=492;DPB=492.0;AC=1;AN=3;AF=0.25;RO=361;AO=131;PRO=0.0;PAO=0.0;QR=13999;QA=4950;PQR=0.0;PQA=0.0;SRF=188;SRR=173;SAF=61;SAR=70;SRP=4.36371;SAP=4.35297;AB=0.351206;ABP=74.7387;RUN=1;RPP=5.01601;RPPR=3.16068;RPL=71.0;RPR=60.0;EPP=5.81167;EPPR=3.01632;DPRA=3.13445;ODDS=75.2695;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99169;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.748;Dels=0.0;FS=4.135;HaplotypeScore=10.8068;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.156;QD=11.66;ReadPosRankSum=-0.61;SOR=0.783	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.587:117:119:4635:0:0:0.0,-32.2632,-417.137:0:0:117:115,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:120.2935:373:242:9364:131:4950:-344.198,0.0,-741.177:131:35:373:232,124:37.0:0.347:2:4376,0,9340:.:1:1:.:.:1:-0.0187789
chr3	12644335	.	G	C	3213.77	PASS	SOMATIC;NS=2;DP=478;DPB=478.0;AC=1;AN=3;AF=0.25;RO=355;AO=123;PRO=0.0;PAO=0.0;QR=13540;QA=4717;PQR=0.0;PQA=0.0;SRF=189;SRR=166;SAF=57;SAR=66;SRP=6.2461;SAP=4.44029;AB=0.348442;ABP=73.4386;RUN=1;RPP=14.0442;RPPR=3.16322;RPL=74.0;RPR=49.0;EPP=10.7958;EPPR=4.38659;DPRA=2.824;ODDS=78.9658;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997183;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.066;Dels=0.0;FS=5.022;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.621;QD=12.04;ReadPosRankSum=0.101;SOR=0.771	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:149.601:121:125:4814:0:0:0.0,-33.8684,-433.214:0:0:121:117,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:124.3005:352:230:8726:123:4717:-328.704,0.0,-689.216:123:35:352:223,116:38.0:0.335:2:4265,0,8596:.:1:1:.:.:1:-0.0187789
chr3	12645007	.	C	T	3409.55	PASS	SOMATIC;NS=2;DP=524;DPB=524.0;AC=1;AN=3;AF=0.25;RO=387;AO=136;PRO=0.0;PAO=0.0;QR=14456;QA=5083;PQR=0.0;PQA=0.0;SRF=170;SRR=217;SAF=70;SAR=66;SRP=15.4051;SAP=3.26577;AB=0.334975;ABP=99.0471;RUN=1;RPP=7.09778;RPPR=17.6046;RPL=60.0;RPR=76.0;EPP=15.5282;EPPR=3.0608;DPRA=3.44068;ODDS=74.5657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.8529;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98708;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.546;Dels=0.0;FS=5.387;HaplotypeScore=8.8783;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.924;QD=10.88;ReadPosRankSum=0.488;SOR=0.525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.563:116:118:4450:0:0:0.0,-31.9575,-400.493:0:0:116:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:121.7815:406:269:10006:136:5083:-348.01,0.0,-790.312:136:34:405:259,131:37.0:0.336:2:4444,0,9907:.:1:1:.:.:1:-0.0187789
chr3	12646000	.	T	C	2978.54	PASS	SOMATIC;NS=2;DP=470;DPB=470.0;AC=1;AN=3;AF=0.25;RO=354;AO=116;PRO=0.0;PAO=0.0;QR=13456;QA=4446;PQR=0.0;PQA=0.0;SRF=168;SRR=186;SAF=50;SAR=66;SRP=4.99775;SAP=7.80251;AB=0.330484;ABP=90.6178;RUN=1;RPP=9.07545;RPPR=3.0103;RPL=67.0;RPR=49.0;EPP=9.07545;EPPR=5.46394;DPRA=2.94958;ODDS=75.1923;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.828;Dels=0.0;FS=5.099;HaplotypeScore=4.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.307;QD=11.02;ReadPosRankSum=-0.772;SOR=0.95	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:116:119:4458:0:0:0.0,-32.2296,-401.213:0:0:116:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:129.501:351:235:8998:116:4446:-304.806,0.0,-714.262:116:33:351:226,111:38.0:0.327:2:3896,0,9036:.:1:1:.:.:1:-0.0187789
chr3	12646357	.	AC	A	3455.06	PASS	SOMATIC;NS=2;DP=475;DPB=531.944;AC=1;AN=4;AF=0.25;RO=332;AO=129;PRO=80.5;PAO=54.5;QR=12416;QA=4683;PQR=2748.5;PQA=1844.5;SRF=176;SRR=156;SAF=61;SAR=68;SRP=5.62653;SAP=3.83512;AB=0.36338;ABP=60.5635;RUN=1;RPP=4.37378;RPPR=18.0798;RPL=60.0;RPR=69.0;EPP=11.915;EPPR=3.11495;DPRA=2.95833;ODDS=78.9883;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=1;MEANALT=8.0;LEN=1;MQM=60.2326;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993976;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.099;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.66;QD=10.86;RPA=5,4;RU=C;ReadPosRankSum=-0.429;SOR=0.677;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:138.873:127:113:4226:0:0:0.0,-33.8782,-419.038:0:0:124:135,0:0.22963,0.0:60.0,0.0:37.832,0.0:0.00525131,0.0:0,0:0,0:80,55,0,0:.:.:.:0:.:0:.:-0.002757	0/1:118.9365:399:219:8190:129:4683:-351.949,0.0,-710.153:144:37:384:248,144:0.0898438,0.131944:60.0,60.3472:37.9811,37.6646:0.000401606,0.00280702:56,18:43,19:127,129,72,72:4372,0,7825:.:1:1:.:1:.:-0.0187789
chr3	12646749	.	A	ATG	761.476	REJECT	NS=2;DP=82;DPB=189.057;AC=2;AN=2;AF=0.5;RO=8;AO=16;PRO=35.6;PAO=36.1;QR=301;QA=470;PQR=1288.6;PQA=1306.85;SRF=2;SRR=6;SAF=0;SAR=16;SRP=7.35324;SAP=37.7539;AB=0.195122;ABP=69.2137;RUN=1;RPP=5.18177;RPPR=7.35324;RPL=10.0;RPR=6.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=3.82925;GTI=1;TYPE=ins;CIGAR=1M2I34M;NUMALT=4;MEANALT=10.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-3.017;FS=3.947;MLEAC=1;MLEAF=0.5;MQ=58.72;MQRankSum=0.642;QD=11.02;RPA=16;RU=TG;ReadPosRankSum=-0.954;SOR=2.613;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.00191145:25:3:112:6:169:-20.1784,-7.39041,-15.0615:6:27:22:.:.:.:.:1:.:.:.:-0.002757	./1:57.86285:108:5:189:10:301:-67.4774,-20.3223,-31.1225:10:22:46:6,11:2388,1331,2147483647:.:1:1:.:.:.:-0.0187789
chr3	12646749	.	A	ATGTG	761.476	REJECT	NS=2;DP=82;DPB=189.057;AC=1;AN=3;AF=0.25;RO=8;AO=17;PRO=35.6;PAO=36.1;QR=301;QA=479;PQR=1288.6;PQA=1306.85;SRF=2;SRR=6;SAF=2;SAR=15;SRP=7.35324;SAP=24.5973;AB=0.207317;ABP=64.0234;RUN=1;RPP=4.1599;RPPR=7.35324;RPL=7.0;RPR=10.0;EPP=4.1599;EPPR=7.35324;DPRA=0.0;ODDS=3.82925;GTI=1;TYPE=ins;CIGAR=1M4I34M;NUMALT=4;MEANALT=10.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.00191145:25:3:112:7:206:-20.1784,-4.32575,-11.7168:7:32:22:.:.:1:.:.:.:-0.002757	0/0:16.7257:57:5:189:10:273:-67.4774,-22.8439,-33.6685:10:22:46:.:.:.:.:.:.:-0.0187789
chr3	12646749	.	A	ATGTGTG	761.476	REJECT	NS=2;DP=82;DPB=189.057;AC=2;AN=3;AF=0.375;RO=8;AO=21;PRO=35.6;PAO=36.1;QR=301;QA=590;PQR=1288.6;PQA=1306.85;SRF=2;SRR=6;SAF=2;SAR=19;SRP=7.35324;SAP=32.8939;AB=0.256098;ABP=45.3805;RUN=1;RPP=5.59539;RPPR=7.35324;RPL=13.0;RPR=8.0;EPP=11.386;EPPR=7.35324;DPRA=0.0;ODDS=3.82925;GTI=1;TYPE=ins;CIGAR=1M6I34M;NUMALT=4;MEANALT=10.0;LEN=6;MQM=59.5238;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.227;FS=1.9735;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=-0.2285;QD=10.99;RPA=16;RU=TG;ReadPosRankSum=-0.604;SOR=1.8175;STR;ClippingRankSum=1.775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49.500955725:28:3:112:6:169:-20.1784,-7.39082,-15.062:14:48:27:10,22:616,0,255:1:.:.:.:.:.:-0.002757	./1:57.86285:108:5:189:15:421:-67.4774,-10.9009,-20.3782:22:48:46:6,30:2388,244,719:.:1:1:.:.:.:-0.0187789
chr3	12646749	.	A	ATGTGTGTGTGTGTGTG	761.476	REJECT	NS=2;DP=82;DPB=189.057;AC=0;AN=4;AF=0.0;RO=8;AO=6;PRO=35.6;PAO=36.1;QR=301;QA=156;PQR=1288.6;PQA=1306.85;SRF=2;SRR=6;SAF=0;SAR=6;SRP=7.35324;SAP=16.0391;AB=0.105263;ABP=80.1547;RUN=1;RPP=4.45795;RPPR=7.35324;RPL=2.0;RPR=4.0;EPP=4.45795;EPPR=7.35324;DPRA=0.0;ODDS=3.82925;GTI=1;TYPE=ins;CIGAR=1M16I34M;NUMALT=4;MEANALT=14.0;LEN=16;MQM=40.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:0.00191145:25:3:112:0:0:-20.1784,-20.9923,-30.2685:0:0:22:.:.:.:.:.:.:-0.002757	0/0:16.7257:57:5:189:6:156:-67.4774,-32.5009,-44.3829:6:13:46:.:.:.:.:.:.:-0.0187789
chr3	12647547	.	T	TG	9876.62	REJECT	NS=2;DP=401;DPB=575.667;AC=2;AN=4;AF=0.5;RO=125;AO=325;PRO=14.5;PAO=19.5;QR=4784;QA=12254;PQR=389.5;PQA=571.5;SRF=54;SRR=71;SAF=151;SAR=174;SRP=8.03074;SAP=6.54479;AB=0.720621;ABP=193.681;RUN=1;RPP=3.5515;RPPR=3.02767;RPL=158.0;RPR=167.0;EPP=13.1728;EPPR=3.44459;DPRA=0.0;ODDS=261.34;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.3077;MQMR=60.0;PAIRED=0.993846;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=12647547;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=1.372;FS=7.033;MLEAC=1;MLEAF=0.5;MQ=60.325;MQRankSum=0.4265;QD=23.83;ReadPosRankSum=-0.877;SOR=0.6265;ClippingRankSum=-0.025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:65:2489:51:1906:-140.111,0.0,-192.588:51:44:116:88,61:1701,0,2238:1:.:1:1:.:.:-0.002757	0/1:129.501:343:60:2295:274:10348:-855.338,0.0,-114.645:285:82:345:197,367:11852,0,1684:.:1:1:1:.:.:-0.0187789
chr3	12648156	.	A	G	610.396	PASS	SOMATIC;NS=2;DP=136;DPB=136.0;AC=1;AN=3;AF=0.25;RO=105;AO=30;PRO=0.0;PAO=0.0;QR=3825;QA=1124;PQR=0.0;PQA=0.0;SRF=5;SRR=100;SAF=0;SAR=30;SRP=189.654;SAP=68.1545;AB=0.294118;ABP=40.564;RUN=1;RPP=4.16842;RPPR=6.50534;RPL=13.0;RPR=17.0;EPP=4.16842;EPPR=5.51266;DPRA=3.0;ODDS=22.2288;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990476;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.464;Dels=0.0;FS=5.013;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.829;QD=9.13;ReadPosRankSum=-0.68;SOR=1.824	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:96.5381:34:34:1257:0:0:0.0,-9.22788,-113.394:0:0:34:34,0:.:0.0:0:.:.:.:0:.:.:0:-0.002757	0/1:129.501:102:71:2568:30:1124:-73.8508,0.0,-203.81:30:30:101:70,30:37.0:0.3:2:960,0,2517:.:1:1:.:.:1:-0.0187789
chr3	12648238	.	T	C	919.97	REJECT	NS=2;DP=57;DPB=65.0;AC=2;AN=4;AF=0.5;RO=31;AO=34;PRO=0.0;PAO=0.0;QR=1173;QA=1296;PQR=0.0;PQA=0.0;SRF=5;SRR=26;SAF=15;SAR=19;SRP=33.9012;SAP=4.03217;AB=0.523077;ABP=3.31097;RUN=1;RPP=3.0103;RPPR=14.8483;RPL=17.0;RPR=17.0;EPP=23.7032;EPPR=18.771;DPRA=0.0;ODDS=43.0344;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.4118;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3445;Dels=0.0;FS=11.7105;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=59.835;MQRankSum=-0.273;QD=17.355;ReadPosRankSum=-0.781;SOR=0.5215;ClippingRankSum=0.289	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:15:8:311:7:267:-20.0946,0.0,-24.0777:7:47:15:8,7:254,0,304:1:.:1:.:.:.:-0.002757	0/1:129.501:50:23:862:27:1029:-79.0129,0.0,-64.1131:27:54:50:23,27:1011,0,803:.:1:1:.:.:.:-0.0187789
chr3	12649446	.	T	TC	335.79	REJECT	NS=2;DP=72;DPB=79.0;AC=2;AN=3;AF=0.25;RO=45;AO=16;PRO=1.66667;PAO=2.66667;QR=1483;QA=430;PQR=17.6667;PQA=46.1667;SRF=45;SRR=0;SAF=15;SAR=1;SRP=100.727;SAP=29.6108;AB=0.571429;ABP=4.25114;RUN=1;RPP=7.89611;RPPR=38.1882;RPL=11.0;RPR=5.0;EPP=11.6962;EPPR=38.1882;DPRA=0.0;ODDS=0.0867204;GTI=1;TYPE=ins;CIGAR=1M1I4M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=59.6875;MQMR=57.0;PAIRED=0.9375;PAIREDR=0.955556;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.658:28:7:233:16:430:-41.5164,0.0,-13.7386:16:64:25:.:.:1:.:.:.:-0.00035518	./1:2.82607:44:38:1250:0:0:-1.99868,-12.3085,-114.368:0:0:42:.:.:1:.:.:.:-0.0187789
chr3	12649449	.	A	C	335.79	REJECT	NS=2;DP=72;DPB=79.0;AC=2;AN=3;AF=0.25;RO=45;AO=6;PRO=1.66667;PAO=2.66667;QR=1483;QA=211;PQR=17.6667;PQA=46.1667;SRF=45;SRR=0;SAF=5;SAR=1;SRP=100.727;SAP=8.80089;AB=0.0833333;ABP=111.584;RUN=1;RPP=3.0103;RPPR=38.1882;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=38.1882;DPRA=0.0;ODDS=0.0867204;GTI=1;TYPE=snp;CIGAR=3M1X1M;NUMALT=2;MEANALT=4.0;LEN=1;MQM=55.5;MQMR=57.0;PAIRED=1.0;PAIREDR=0.955556;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:113.658:28:7:233:2:61:-41.5164,-29.2438,-46.7351:2:8:25:.:.:1:.:.:.:-0.00035518	0/1:2.82607:44:38:1250:4:150:-1.99868,0.0,-100.974:4:10:42:.:.:1:.:.:.:-0.0187789
chr3	12649576	.	A	G	3020.11	PASS	SOMATIC;NS=2;DP=407;DPB=407.0;AC=1;AN=3;AF=0.25;RO=296;AO=111;PRO=0.0;PAO=0.0;QR=11468;QA=4270;PQR=0.0;PQA=0.0;SRF=192;SRR=104;SAF=68;SAR=43;SRP=59.8207;SAP=15.2371;AB=0.397849;ABP=28.2974;RUN=1;RPP=3.02986;RPPR=10.5224;RPL=56.0;RPR=55.0;EPP=3.18637;EPPR=14.748;DPRA=2.17969;ODDS=80.8388;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.972973;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.99;Dels=0.0;FS=3.551;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=3.32;QD=14.18;ReadPosRankSum=-1.112;SOR=0.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.998:121:128:4960:0:0:0.0,-34.6819,-446.331:0:0:121:115,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:121.499:275:168:6508:111:4270:-308.493,0.0,-509.819:111:40:275:158,105:38.0:0.395:2:3941,0,6291:.:1:1:.:.:1:-0.0187789
chr3	12649857	.	G	C	12955.6	REJECT	NS=2;DP=458;DPB=525.0;AC=2;AN=4;AF=0.5;RO=103;AO=420;PRO=0.0;PAO=0.0;QR=3841;QA=16072;PQR=0.0;PQA=0.0;SRF=51;SRR=52;SAF=237;SAR=183;SRP=3.03138;SAP=18.0865;AB=0.8;ABP=413.419;RUN=1;RPP=4.33386;RPPR=6.5732;RPL=218.0;RPR=202.0;EPP=5.51266;EPPR=4.04333;DPRA=0.0;ODDS=10.6794;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992857;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3035;Dels=0.0;FS=2.143;HaplotypeScore=6.8372;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.692;QD=21.98;ReadPosRankSum=0.5215;SOR=0.8735;ClippingRankSum=0.891	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.546:127:69:2595:60:2208:-163.775,0.0,-198.62:59:47:126:65,59:1913,0,2219:1:.:1:.:.:.:-0.00035518	0/1:72.69015:392:34:1246:360:13864:-1140.2,0.0,-5.37449:358:91:392:34,357:14293,0,203:.:1:1:.:.:.:-0.0187789
chr3	12649937	.	C	T	3612.64	PASS	SOMATIC;NS=2;DP=513;DPB=513.0;AC=1;AN=3;AF=0.25;RO=374;AO=137;PRO=0.0;PAO=0.0;QR=14067;QA=5248;PQR=0.0;PQA=0.0;SRF=167;SRR=207;SAF=58;SAR=79;SRP=12.3;SAP=10.0002;AB=0.356021;ABP=71.7925;RUN=1;RPP=4.92817;RPPR=6.93521;RPL=74.0;RPR=63.0;EPP=3.15295;EPPR=4.49666;DPRA=0.0;ODDS=79.0212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992701;PAIREDR=0.991979;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.892;Dels=0.0;FS=0.812;HaplotypeScore=9.789;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.972;QD=12.46;ReadPosRankSum=-0.974;SOR=0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.37:128:129:4895:1:16:0.0,-33.7876,-439.089:1:1:127:123,1:.:0.008065:0:.:.:.:0:.:.:0:-0.00035518	0/1:117.685:380:245:9172:136:5232:-367.437,0.0,-721.791:136:36:379:238,133:38.0:0.358:2:4764,0,8975:.:1:1:.:.:1:-0.0187789
chr3	17077268	.	C	T	9253.035	REJECT	NS=2;DP=370;DPB=426.0;AC=3;AN=4;AF=0.75;RO=100;AO=325;PRO=0.0;PAO=0.0;QR=3823;QA=12473;PQR=0.0;PQA=0.0;SRF=43;SRR=57;SAF=174;SAR=151;SRP=7.26639;SAP=6.54479;AB=0.68038;ABP=92.3155;RUN=1;RPP=9.43118;RPPR=3.35774;RPL=178.0;RPR=147.0;EPP=21.7785;EPPR=3.79203;DPRA=0.0;ODDS=69.6535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990769;PAIREDR=0.99;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.391;Dels=0.0;FS=5.295;HaplotypeScore=7.9225;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.254;QD=27.61;ReadPosRankSum=2.553;SOR=0.7335	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:110:4249:-382.441,-29.8242,0.0:108:100:108:0,107:4350,322,0:1:.:1:.:.:.:-0.00035518	0/1:129.501:315:100:3823:215:8224:-654.401,0.0,-258.557:215:68:314:99,215:8254,0,3303:.:1:1:.:.:.:-0.0187789
chr3	24001078	.	C	T	10808.8	REJECT	NS=2;DP=380;DPB=428.0;AC=2;AN=4;AF=0.5;RO=80;AO=348;PRO=0.0;PAO=0.0;QR=2981;QA=13404;PQR=0.0;PQA=0.0;SRF=41;SRR=39;SAF=189;SAR=159;SRP=3.11887;SAP=8.62618;AB=0.813084;ABP=367.412;RUN=1;RPP=3.03526;RPPR=4.74748;RPL=173.0;RPR=175.0;EPP=22.5785;EPPR=3.11887;DPRA=0.0;ODDS=102.338;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997126;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8905;Dels=0.0;FS=2.834;HaplotypeScore=9.7343;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1225;QD=24.06;ReadPosRankSum=0.3805;SOR=0.6835;ClippingRankSum=1.059	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:40:1478:55:2084:-161.854,0.0,-107.324:53:57:93:40,52:1836,0,1356:1:.:1:.:.:.:-0.00035518	0/1:129.501:332:40:1503:293:11320:-927.955,0.0,-45.0006:292:88:332:40,292:11651,0,670:.:1:1:.:.:.:-0.0187789
chr3	30686414	.	A	G	2053.16	PASS	SOMATIC;NS=2;DP=310;DPB=310.0;AC=1;AN=3;AF=0.25;RO=230;AO=80;PRO=0.0;PAO=0.0;QR=8764;QA=3092;PQR=0.0;PQA=0.0;SRF=49;SRR=181;SAF=16;SAR=64;SRP=167.513;SAP=65.5487;AB=0.36036;ABP=40.61;RUN=1;RPP=13.8677;RPPR=69.6273;RPL=50.0;RPR=30.0;EPP=3.0103;EPPR=11.5074;DPRA=2.52273;ODDS=55.8843;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995652;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.562;Dels=0.0;FS=1.334;HaplotypeScore=5.8788;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.878;QD=12.56;ReadPosRankSum=-0.819;SOR=0.829	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:87:88:3312:0:0:0.0,-23.8443,-298.173:0:0:87:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:222:142:5452:80:3092:-218.028,0.0,-430.295:80:36:222:139,77:38.0:0.355:2:2816,0,5408:.:1:1:.:.:1:-0.0187789
chr3	30713126	.	T	A	970.45	REJECT	NS=2;DP=200;DPB=224.0;AC=2;AN=4;AF=0.5;RO=173;AO=51;PRO=0.0;PAO=0.0;QR=6584;QA=1920;PQR=0.0;PQA=0.0;SRF=114;SRR=59;SAF=43;SAR=8;SRP=40.9797;SAP=55.1682;AB=0.227679;ABP=147.297;RUN=1;RPP=3.05288;RPPR=20.1938;RPL=25.0;RPR=26.0;EPP=3.3935;EPPR=16.6793;DPRA=0.0;ODDS=74.8639;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99422;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3545;Dels=0.0;FS=5.7105;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.124;QD=11.45;ReadPosRankSum=0.921;SOR=1.7055;ClippingRankSum=-0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:47:22:840:26:989:-76.1114,0.0,-62.6826:25:54:47:21,25:955,0,786:1:.:1:.:.:.:-0.00035518	0/1:129.501:176:151:5744:25:931:-36.1013,0.0,-469.126:25:14:176:151,25:513,0,5884:.:1:1:.:.:.:-0.0187789
chr3	37053568	.	A	G	2531.25	PASS	SOMATIC;NS=2;DP=403;DPB=403.0;AC=1;AN=3;AF=0.25;RO=304;AO=99;PRO=0.0;PAO=0.0;QR=11660;QA=3828;PQR=0.0;PQA=0.0;SRF=110;SRR=194;SAF=33;SAR=66;SRP=53.4113;SAP=26.8965;AB=0.321429;ABP=88.3181;RUN=1;RPP=4.08507;RPPR=30.468;RPL=53.0;RPR=46.0;EPP=3.55865;EPPR=3.26745;DPRA=3.24211;ODDS=60.227;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.43;Dels=0.0;FS=0.981;HaplotypeScore=6.8899;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.727;QD=10.8;ReadPosRankSum=-0.718;SOR=0.802	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:91:95:3574:0:0:0.0,-25.7303,-321.714:0:0:91:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:308:209:8086:99:3828:-260.862,0.0,-643.877:99:32:308:200,95:38.0:0.324:2:3356,0,8159:.:1:1:.:.:1:-0.0187789
chr3	37067127	.	GAC	AAT	121.574	REJECT	NS=2;DP=165;DPB=171.667;AC=2;AN=4;AF=0.5;RO=153;AO=3;PRO=14.0;PAO=0.0;QR=4832;QA=49;PQR=179.0;PQA=0.0;SRF=102;SRR=51;SAF=3;SAR=0;SRP=39.9253;SAP=9.52472;AB=0.0181818;ABP=335.719;RUN=1;RPP=3.73412;RPPR=203.992;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=11.8807;DPRA=0.0;ODDS=5.42423;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=1;MEANALT=4.5;LEN=3;MQM=58.6667;MQMR=59.732;PAIRED=1.0;PAIREDR=0.993464;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23.5762:25:20:621:2:35:-3.63362,0.0,-54.113:2:9:22:.:.:1:.:.:.:-0.00035518	0/1:114.943:140:133:4211:1:14:-12.5779,0.0,-351.084:1:1:134:.:.:1:.:.:.:-0.0187789
chr3	37083740	.	A	G	2193.94	PASS	SOMATIC;NS=2;DP=379;DPB=379.0;AC=1;AN=3;AF=0.25;RO=290;AO=89;PRO=0.0;PAO=0.0;QR=10917;QA=3417;PQR=0.0;PQA=0.0;SRF=192;SRR=98;SAF=59;SAR=30;SRP=69.1728;SAP=23.5295;AB=0.309028;ABP=94.2423;RUN=1;RPP=18.2594;RPPR=11.6662;RPL=32.0;RPR=57.0;EPP=15.9171;EPPR=6.63441;DPRA=3.16484;ODDS=57.6522;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986207;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.516;Dels=0.0;FS=2.335;HaplotypeScore=8.8319;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.122;QD=10.32;ReadPosRankSum=-2.475;SOR=0.543	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:91:3317:0:0:0.0,-24.6121,-298.585:0:0:88:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:287:199:7600:89:3417:-229.375,0.0,-605.6:89:31:287:191,83:38.0:0.295:2:2990,0,7571:.:1:1:.:.:1:-0.0187789
chr3	37627112	.	T	C	12763.9	REJECT	NS=2;DP=341;DPB=389.0;AC=4;AN=4;AF=1.0;RO=0;AO=389;PRO=0.0;PAO=0.0;QR=0;QA=14772;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=169;SAR=220;SRP=0.0;SAP=17.5296;AB=0.0;ABP=0.0;RUN=1;RPP=5.96328;RPPR=0.0;RPL=183.0;RPR=206.0;EPP=7.70492;EPPR=0.0;DPRA=0.0;ODDS=64.2585;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994859;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.26;SOR=0.954	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:96:3695:-332.634,-26.032,0.0:95:100:95:0,95:3840,286,0:1:.:1:.:.:.:-0.00035518	1/1:129.501:293:0:0:293:11077:-996.358,-79.3186,0.0:293:100:293:0,293:12330,861,0:.:1:1:.:.:.:-0.0187789
chr3	37627149	.	G	A	8912.54	REJECT	NS=2;DP=318;DPB=368.0;AC=2;AN=4;AF=0.5;RO=81;AO=287;PRO=0.0;PAO=0.0;QR=3119;QA=11140;PQR=0.0;PQA=0.0;SRF=28;SRR=53;SAF=111;SAR=176;SRP=19.7655;SAP=34.9771;AB=0.779891;ABP=253.414;RUN=1;RPP=9.3734;RPPR=3.03711;RPL=158.0;RPR=129.0;EPP=13.3683;EPPR=9.04217;DPRA=0.0;ODDS=116.022;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989547;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.163;Dels=0.0;FS=4.4825;HaplotypeScore=8.7455;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0865;QD=27.145;ReadPosRankSum=-0.2755;SOR=0.57;ClippingRankSum=0.613	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3855:98:45:1736:54:2127:-164.605,0.0,-129.421:53:54:98:45,53:2018,0,1581:1:.:1:.:.:.:-0.00035518	0/1:118.3855:268:36:1383:233:9013:-737.816,0.0,-51.5602:232:87:268:36,232:9226,0,742:.:1:1:.:.:.:-0.0187789
chr3	46537849	.	C	T	6918.01	REJECT	NS=2;DP=316;DPB=350.0;AC=3;AN=4;AF=0.75;RO=110;AO=240;PRO=0.0;PAO=0.0;QR=4209;QA=9207;PQR=0.0;PQA=0.0;SRF=45;SRR=65;SAF=84;SAR=156;SRP=10.9066;SAP=49.9141;AB=0.609929;ABP=32.6101;RUN=1;RPP=58.0571;RPPR=16.355;RPL=159.0;RPR=81.0;EPP=18.9706;EPPR=48.4928;DPRA=0.0;ODDS=43.4595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995833;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.189;Dels=0.0;FS=2.562;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.031;QD=27.495;ReadPosRankSum=-0.856;SOR=1.165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:67:0:0:68:2629:-236.773,-18.4482,0.0:67:100:67:0,66:2647,198,0:1:.:1:.:.:.:-0.00035518	0/1:129.501:282:110:4209:172:6578:-515.316,0.0,-302.217:172:61:282:110,172:6520,0,3856:.:1:1:.:.:.:-0.0187789
chr3	46960742	.	A	G	13365.95	REJECT	NS=2;DP=358;DPB=407.0;AC=4;AN=4;AF=1.0;RO=2;AO=405;PRO=0.0;PAO=0.0;QR=79;QA=15399;PQR=0.0;PQA=0.0;SRF=2;SRR=0;SAF=189;SAR=216;SRP=7.35324;SAP=6.91895;AB=0.0;ABP=0.0;RUN=1;RPP=5.84662;RPPR=7.35324;RPL=214.0;RPR=191.0;EPP=12.924;EPPR=7.35324;DPRA=0.0;ODDS=63.2863;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997531;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.605;Dels=0.0;FS=3.253;HaplotypeScore=2.9238;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.249;QD=32.745;ReadPosRankSum=0.344;SOR=0.5835	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.876:95:0:0:96:3601:-323.744,-25.6098,0.0:95:100:95:0,94:3897,282,0:1:.:1:.:.:.:-0.00035518	1/1:126.876:310:2:79:309:11798:-1054.03,-77.0938,0.0:308:99:310:2,308:13023,827,0:.:1:1:.:.:.:-0.0187789
chr3	46960797	.	C	G	9131.355	REJECT	NS=2;DP=244;DPB=280.0;AC=4;AN=4;AF=1.0;RO=0;AO=279;PRO=0.0;PAO=0.0;QR=0;QA=10655;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=92;SAR=187;SRP=0.0;SAP=73.2524;AB=0.0;ABP=0.0;RUN=1;RPP=54.0749;RPPR=0.0;RPL=180.0;RPR=99.0;EPP=3.39167;EPPR=0.0;DPRA=0.0;ODDS=48.645;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996416;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.725;SOR=1.5385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:71:0:0:71:2726:-245.485,-19.2512,0.0:71:100:71:0,71:2975,213,0:1:.:1:.:.:.:-0.00035518	1/1:129.501:209:0:0:208:7929:-713.312,-56.3371,0.0:208:100:208:0,208:8866,617,0:.:1:1:.:.:.:-0.0187789
chr3	46967040	.	G	A	11787.75	REJECT	NS=2;DP=317;DPB=366.0;AC=4;AN=4;AF=1.0;RO=0;AO=366;PRO=0.0;PAO=0.0;QR=0;QA=13945;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=90;SAR=276;SRP=0.0;SAP=208.268;AB=0.0;ABP=0.0;RUN=1;RPP=42.9037;RPPR=0.0;RPL=224.0;RPR=142.0;EPP=20.3109;EPPR=0.0;DPRA=0.0;ODDS=64.8092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994536;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.75;SOR=2.488	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.506:96:0:0:97:3677:-330.971,-26.2712,0.0:96:100:96:0,96:3961,290,0:1:.:1:.:.:.:-0.00035518	1/1:122.506:269:0:0:269:10268:-923.53,-72.803,0.0:269:100:269:0,269:11372,783,0:.:1:1:.:.:.:-0.0187789
chr3	47103861	.	G	GT	2393.26	REJECT	NS=2;DP=130;DPB=163.815;AC=1;AN=3;AF=0.0;RO=16;AO=2;PRO=17.0333;PAO=16.0333;QR=590;QA=55;PQR=614.983;PQA=577.983;SRF=6;SRR=10;SAF=1;SAR=1;SRP=5.18177;SAP=3.0103;AB=0.0714286;ABP=47.6806;RUN=1;RPP=7.35324;RPPR=16.582;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=3.55317;DPRA=0.0;ODDS=13.1042;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=4;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:121.581:28:7:256:2:55:-44.2405,-41.9978,-65.4398:2:7:27:.:.:1:.:.:.:-0.00035518	0/0:56.9109:102:9:334:0:0:-209.458,-206.77,-239.788:0:0:96:.:.:.:.:.:.:-0.0187789
chr3	47103861	.	GT	G	2393.26	REJECT	NS=2;DP=130;DPB=163.815;AC=2;AN=2;AF=0.25;RO=16;AO=14;PRO=17.0333;PAO=21.0333;QR=590;QA=372;PQR=614.983;PQA=758.983;SRF=6;SRR=10;SAF=4;SAR=10;SRP=5.18177;SAP=8.59409;AB=0.107692;ABP=176.795;RUN=1;RPP=5.49198;RPPR=16.582;RPL=9.0;RPR=5.0;EPP=5.49198;EPPR=3.55317;DPRA=0.0;ODDS=13.1042;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=4;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.328;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=-0.134;QD=17.07;RPA=14;RU=T;ReadPosRankSum=-0.255;SOR=0.533;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:121.581:28:7:256:2:80:-44.2405,-36.5034,-59.6613:2:7:27:.:.:.:.:1:.:.:.:-0.00035518	./1:77.95545:141:9:334:12:292:-209.458,-172.038,-200.796:15:13:114:14,19:3179,2093,2147483647:.:1:1:.:.:.:-0.0187789
chr3	47103861	.	GTT	G	2393.26	REJECT	NS=2;DP=130;DPB=163.815;AC=2;AN=3;AF=0.5;RO=16;AO=81;PRO=17.0333;PAO=32.7;QR=590;QA=2473;PQR=614.983;PQA=1132.65;SRF=6;SRR=10;SAF=23;SAR=58;SRP=5.18177;SAP=35.8505;AB=0.623077;ABP=20.1148;RUN=1;RPP=43.7857;RPPR=16.582;RPL=60.0;RPR=21.0;EPP=5.18177;EPPR=3.55317;DPRA=0.0;ODDS=13.1042;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=4;MEANALT=7.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.126;FS=1.5685;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=-0.258;QD=13.76;RPA=14;RU=T;ReadPosRankSum=-0.93;SOR=1.048;STR;ClippingRankSum=-0.79	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:110.2905:32:7:256:15:427:-44.2405,0.0,-27.8085:19:60:31:13,23:560,0,313:1:.:1:.:.:.:-0.00035518	./1:77.95545:141:9:334:66:2046:-209.458,-6.84158,-18.8839:83:72:114:14,100:3179,137,252:.:1:1:.:.:.:-0.0187789
chr3	47103861	.	GTTT	G	2393.26	PASS	SOMATIC;NS=2;DP=130;DPB=163.815;AC=1;AN=3;AF=0.0;RO=16;AO=10;PRO=17.0333;PAO=11.2;QR=590;QA=314;PQR=614.983;PQA=401.4;SRF=6;SRR=10;SAF=2;SAR=8;SRP=5.18177;SAP=10.8276;AB=0.0769231;ABP=205.124;RUN=1;RPP=6.48466;RPPR=16.582;RPL=7.0;RPR=3.0;EPP=3.0103;EPPR=3.55317;DPRA=0.0;ODDS=13.1042;GTI=0;TYPE=del;CIGAR=1M3D23M;NUMALT=4;MEANALT=7.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:121.581:28:7:256:1:36:-44.2405,-48.5944,-128.707:1:4:27:.:.:1:.:.:.:-0.00035518	0/0:56.9109:102:9:334:9:278:-209.458,-197.815,-353.9:9:9:96:.:.:.:.:.:.:-0.0187789
chr3	47125385	.	G	A	10031.6	REJECT	NS=2;DP=365;DPB=423.0;AC=2;AN=4;AF=0.5;RO=89;AO=333;PRO=0.0;PAO=0.0;QR=3328;QA=12495;PQR=0.0;PQA=0.0;SRF=46;SRR=43;SAF=161;SAR=172;SRP=3.22989;SAP=3.79933;AB=0.787234;ABP=306.139;RUN=1;RPP=3.17332;RPPR=3.0347;RPL=164.0;RPR=169.0;EPP=4.47751;EPPR=3.0347;DPRA=0.0;ODDS=102.574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993994;PAIREDR=0.988764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8025;Dels=0.0;FS=4.523;HaplotypeScore=3.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.405;QD=26.11;ReadPosRankSum=0.468;SOR=0.921;ClippingRankSum=0.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:51:1898:63:2404:-185.48,0.0,-139.952:62:55:112:49,62:2106,0,1597:1:.:1:.:.:.:-0.00035518	0/1:129.501:308:38:1430:270:10091:-824.303,0.0,-45.247:270:88:308:38,270:10347,0,685:.:1:1:.:.:.:-0.0187789
chr3	47147393	.	CAA	C	301.877	REJECT	NS=2;DP=48;DPB=129.057;AC=2;AN=3;AF=0.5;RO=5;AO=9;PRO=56.8167;PAO=46.8167;QR=166;QA=316;PQR=1991.25;PQA=1637.25;SRF=4;SRR=1;SAF=9;SAR=0;SRP=6.91895;SAP=22.5536;AB=0.1875;ABP=43.7254;RUN=1;RPP=14.8328;RPPR=6.91895;RPL=1.0;RPR=8.0;EPP=14.8328;EPPR=3.44459;DPRA=0.0;ODDS=4.31111;GTI=0;TYPE=del;CIGAR=1M2D32M;NUMALT=4;MEANALT=15.5;LEN=2;MQM=63.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.751;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-0.751;QD=5.05;ReadPosRankSum=0.751;SOR=1.609;ClippingRankSum=0.751	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:28:4:132:7:246:-27.3529,0.0,-38.96:10:55:18:7,14:219,0,125:1:.:1:.:.:.:-0.00035518	./1:18.78:12:1:34:2:70:-12.7734,-7.2808,-9.52952:2:25:8:.:.:.:.:1:.:.:.:-0.0187789
chr3	47147393	.	CAAA	C	301.877	REJECT	NS=2;DP=48;DPB=129.057;AC=2;AN=2;AF=0.25;RO=5;AO=5;PRO=56.8167;PAO=42.9833;QR=166;QA=177;PQR=1991.25;PQA=1505.25;SRF=4;SRR=1;SAF=4;SAR=1;SRP=6.91895;SAP=6.91895;AB=0.104167;ABP=68.3354;RUN=1;RPP=6.91895;RPPR=6.91895;RPL=1.0;RPR=4.0;EPP=13.8677;EPPR=3.44459;DPRA=0.0;ODDS=4.31111;GTI=0;TYPE=del;CIGAR=1M3D31M;NUMALT=4;MEANALT=15.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:36:4:132:2:64:-27.3529,-29.9907,-110.015:2:13:16:.:.:1:.:.:.:-0.00035518	./1:18.78:12:1:34:3:113:-12.7734,-2.97276,-28.44:3:38:8:.:.:1:.:.:.:-0.0187789
chr3	47147393	.	CAAAA	C	301.877	REJECT	NS=2;DP=48;DPB=129.057;AC=1;AN=3;AF=0.0;RO=5;AO=3;PRO=56.8167;PAO=41.65;QR=166;QA=104;PQR=1991.25;PQA=1459.25;SRF=4;SRR=1;SAF=3;SAR=0;SRP=6.91895;SAP=9.52472;AB=0.0625;ABP=82.8119;RUN=1;RPP=9.52472;RPPR=6.91895;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=3.44459;DPRA=0.0;ODDS=4.31111;GTI=0;TYPE=del;CIGAR=1M4D30M;NUMALT=4;MEANALT=15.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:36:4:132:1:38:-27.3529,-32.8753,-121.273:1:6:16:.:.:1:.:.:.:-0.00035518	0/0:18.78:12:1:34:2:66:-12.7734,-9.81104,-35.8208:2:25:8:.:.:.:.:.:.:-0.0187789
chr3	47147414	.	AATCAAATCAGT	TCAAATCAGA	301.877	REJECT	NS=2;DP=48;DPB=129.057;AC=1;AN=3;AF=0.0;RO=5;AO=2;PRO=56.8167;PAO=5.73333;QR=166;QA=32;PQR=1991.25;PQA=181.0;SRF=4;SRR=1;SAF=2;SAR=0;SRP=6.91895;SAP=7.35324;AB=0.0555556;ABP=64.7766;RUN=1;RPP=7.35324;RPPR=6.91895;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=3.44459;DPRA=0.0;ODDS=4.31111;GTI=0;TYPE=complex;CIGAR=1M2D29M1X2M;NUMALT=4;MEANALT=24.0;LEN=33;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:36:4:132:2:32:-27.3529,-86.492,-867.436:2:13:16:.:.:1:.:.:.:-0.00035518	0/0:18.78:12:1:34:0:0:-12.7734,-113.867,-1204.68:0:0:8:.:.:.:.:.:.:-0.0187789
chr3	47161214	.	T	C	6709.48	REJECT	NS=2;DP=244;DPB=286.0;AC=2;AN=4;AF=0.5;RO=57;AO=229;PRO=0.0;PAO=0.0;QR=2142;QA=8715;PQR=0.0;PQA=0.0;SRF=46;SRR=11;SAF=186;SAR=43;SRP=49.6779;SAP=196.916;AB=0.800699;ABP=227.629;RUN=1;RPP=78.1205;RPPR=11.5819;RPL=70.0;RPR=159.0;EPP=3.09564;EPPR=4.877;DPRA=0.0;ODDS=54.413;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.2576;MQMR=60.0;PAIRED=0.995633;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.02;Dels=0.0;FS=1.166;HaplotypeScore=9.759;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-0.1295;QD=28.055;ReadPosRankSum=0.239;SOR=0.893;ClippingRankSum=-0.632	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7625:84:33:1242:51:1917:-149.789,0.0,-89.0955:51:61:84:33,51:1838,0,1146:1:.:1:.:.:.:-0.00035518	0/1:117.7625:202:24:900:178:6798:-555.776,0.0,-26.2891:178:88:202:24,178:7011,0,399:.:1:1:.:.:.:-0.0187789
chr3	47162661	.	A	G	9964.81	REJECT	NS=2;DP=364;DPB=414.0;AC=2;AN=4;AF=0.5;RO=90;AO=324;PRO=0.0;PAO=0.0;QR=3386;QA=12405;PQR=0.0;PQA=0.0;SRF=39;SRR=51;SAF=155;SAR=169;SRP=6.48466;SAP=4.32391;AB=0.782609;ABP=290.211;RUN=1;RPP=3.0103;RPPR=5.42305;RPL=162.0;RPR=162.0;EPP=10.7579;EPPR=4.55446;DPRA=0.0;ODDS=105.943;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.8295;Dels=0.0;FS=1.0775;HaplotypeScore=2.8934;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.265;QD=25.825;ReadPosRankSum=1.0695;SOR=0.6085;ClippingRankSum=0.551	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:51:1929:48:1835:-138.347,0.0,-146.814:48:48:98:50,48:1690,0,1709:1:.:1:.:.:.:-0.00035518	0/1:129.501:315:39:1457:276:10570:-865.401,0.0,-45.766:276:88:315:39,276:10956,0,698:.:1:1:.:.:.:-0.0187789
chr3	47292183	.	T	C	9827.64	REJECT	NS=2;DP=379;DPB=439.0;AC=2;AN=4;AF=0.5;RO=116;AO=323;PRO=0.0;PAO=0.0;QR=4457;QA=12352;PQR=0.0;PQA=0.0;SRF=57;SRR=59;SAF=145;SAR=178;SRP=3.08518;SAP=10.3315;AB=0.735763;ABP=214.959;RUN=1;RPP=3.01702;RPPR=4.88226;RPL=161.0;RPR=162.0;EPP=26.4125;EPPR=3.30981;DPRA=0.0;ODDS=184.851;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991379;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.359;Dels=0.0;FS=2.5735;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3075;QD=23.67;ReadPosRankSum=-0.017;SOR=0.9135;ClippingRankSum=1.016	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.027:118:67:2588:51:1928:-141.546,0.0,-200.944:51:43:118:67,51:1662,0,2430:1:.:1:.:.:.:-0.00035518	0/1:123.027:320:49:1869:272:10424:-850.655,0.0,-81.1722:272:85:320:47,272:10711,0,1086:.:1:1:.:.:.:-0.0187789
chr3	47300755	.	G	A	6701.775	REJECT	NS=2;DP=188;DPB=214.0;AC=4;AN=4;AF=1.0;RO=1;AO=213;PRO=0.0;PAO=0.0;QR=40;QA=7939;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=130;SAR=83;SRP=5.18177;SAP=25.5304;AB=0.0;ABP=0.0;RUN=1;RPP=247.938;RPPR=5.18177;RPL=29.0;RPR=184.0;EPP=7.50617;EPPR=5.18177;DPRA=0.0;ODDS=29.9499;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.672;Dels=0.0;FS=0.0;HaplotypeScore=3.8994;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.096;QD=35.545;ReadPosRankSum=0.46;SOR=0.904;ClippingRankSum=-1.379	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:114.668:50:1:40:50:1880:-165.806,-10.2289,0.0:49:98:50:1,48:1981,103,0:1:.:1:.:.:.:-0.00035518	1/1:129.501:163:0:0:163:6059:-545.113,-44.088,0.0:163:100:163:0,163:6650,464,0:.:1:1:.:.:.:-0.0187789
chr3	47305025	.	C	T	3016.94	PASS	SOMATIC;NS=2;DP=418;DPB=418.0;AC=1;AN=3;AF=0.25;RO=296;AO=122;PRO=0.0;PAO=0.0;QR=11222;QA=4339;PQR=0.0;PQA=0.0;SRF=144;SRR=152;SAF=56;SAR=66;SRP=3.47981;SAP=4.7902;AB=0.401316;ABP=28.7251;RUN=1;RPP=3.0815;RPPR=3.03964;RPL=60.0;RPR=62.0;EPP=11.625;EPPR=4.44817;DPRA=2.66667;ODDS=72.0111;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996622;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-3.126;Dels=0.0;FS=0.0;HaplotypeScore=4.893;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.45;QD=12.8;ReadPosRankSum=-1.352;SOR=0.818	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.342:111:114:4299:0:0:0.0,-30.848,-386.874:0:0:111:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:120.171:304:182:6923:122:4339:-308.039,0.0,-540.495:122:40:304:175,115:35.0:0.392:2:3919,0,6836:.:1:1:.:.:1:-0.0187789
chr3	49398505	.	C	CA	37.73	PASS	DP=51;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.102;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=0.034;QD=0.74;ReadPosRankSum=-0.102;SOR=0.368;ClippingRankSum=-1.877	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33,10:43:75.0:75,0,867:10:23:43:1:.:.:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0187789
chr3	49398505	.	CAAAAAAAAC	AAAAAAAAAA	2212.47	REJECT	NS=1;DP=68;DPB=122.897;AC=0;AN=4;AF=0.0;RO=0;AO=12;PRO=21.8333;PAO=31.3333;QR=0;QA=105;PQR=776.0;PQA=1119.17;SRF=0;SRR=0;SAF=0;SAR=12;SRP=0.0;SAP=29.068;AB=0.0;ABP=0.0;RUN=1;RPP=21.1059;RPPR=0.0;RPL=1.0;RPR=11.0;EPP=21.1059;EPPR=0.0;DPRA=0.0;ODDS=30.1164;GTI=0;TYPE=complex;CIGAR=1X8M1X29M;NUMALT=3;MEANALT=39.0;LEN=39;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:128.7:68:0:0:12:105:-224.314,-114.972,-132.56:12:55:22:.:.:.:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0187789
chr3	49398514	.	C	A	2212.47	REJECT	NS=1;DP=68;DPB=122.897;AC=2;AN=4;AF=1.0;RO=0;AO=6;PRO=21.8333;PAO=40.3333;QR=0;QA=235;PQR=776.0;PQA=1412.0;SRF=0;SRR=0;SAF=2;SAR=4;SRP=0.0;SAP=4.45795;AB=0.0;ABP=0.0;RUN=1;RPP=16.0391;RPPR=0.0;RPL=0.0;RPR=6.0;EPP=4.45795;EPPR=0.0;DPRA=0.0;ODDS=30.1164;GTI=0;TYPE=snp;CIGAR=9M1X29M;NUMALT=3;MEANALT=39.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.023;FS=3.728;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=0.299;QD=15.49;ReadPosRankSum=-2.326;SOR=0.402;ClippingRankSum=0.322	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:66.35:64:0:0:6:235:-224.314,-19.0937,0.0:29:57:41:7,53:1405,0,4:1:.:1:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0187789
chr3	49398514	.	CAAAACAAAAAAAAAAAAC	AAAAACAAAAAAAAAAAAA	2212.47	REJECT	NS=1;DP=68;DPB=122.897;AC=0;AN=4;AF=0.0;RO=0;AO=4;PRO=21.8333;PAO=16.5;QR=0;QA=56;PQR=776.0;PQA=520.833;SRF=0;SRR=0;SAF=4;SAR=0;SRP=0.0;SAP=11.6962;AB=0.0;ABP=0.0;RUN=1;RPP=11.6962;RPPR=0.0;RPL=0.0;RPR=4.0;EPP=11.6962;EPPR=0.0;DPRA=0.0;ODDS=30.1164;GTI=0;TYPE=complex;CIGAR=9M1X17M1X11M;NUMALT=3;MEANALT=39.0;LEN=39;MQM=59.25;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:128.7:68:0:0:4:56:-224.314,-177.053,-552.497:4:18:22:.:.:.:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0187789
chr3	52342529	.	T	G	5709.64	REJECT	NS=2;DP=379;DPB=432.0;AC=2;AN=4;AF=0.5;RO=222;AO=210;PRO=0.0;PAO=0.0;QR=8546;QA=8049;PQR=0.0;PQA=0.0;SRF=92;SRR=130;SAF=106;SAR=104;SRP=17.1347;SAP=3.05166;AB=0.486111;ABP=3.73412;RUN=1;RPP=3.67208;RPPR=7.7445;RPL=101.0;RPR=109.0;EPP=26.8345;EPPR=3.04943;DPRA=0.0;ODDS=305.286;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995495;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.396;Dels=0.0;FS=6.758;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.532;QD=18.03;ReadPosRankSum=0.1615;SOR=0.5615;ClippingRankSum=-0.612	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:47:1791:59:2280:-176.495,0.0,-132.478:58:56:105:46,58:2064,0,1522:1:.:1:.:.:.:-0.00035518	0/1:129.501:326:175:6755:151:5769:-430.597,0.0,-519.282:151:46:326:175,151:5462,0,6582:.:1:1:.:.:.:-0.0187789
chr3	52584431	.	T	TCTC	1867.55	PASS	SOMATIC;NS=2;DP=285;DPB=365.667;AC=1;AN=4;AF=0.25;RO=209;AO=76;PRO=3.0;PAO=5.0;QR=7840;QA=2793;PQR=37.0;PQA=103.0;SRF=155;SRR=54;SAF=58;SAR=18;SRP=108.997;SAP=48.7255;AB=0.353488;ABP=43.0967;RUN=1;RPP=22.325;RPPR=7.59221;RPL=25.0;RPR=51.0;EPP=3.12459;EPPR=12.9949;DPRA=3.07143;ODDS=44.6811;GTI=0;TYPE=ins;CIGAR=1M3I2M;NUMALT=1;MEANALT=1.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=52584431;HOMLEN=2;HOMSEQ=CT;SVLEN=3;SVTYPE=INS;BaseQRankSum=2.43;FS=4.667;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.982;QD=18.28;ReadPosRankSum=-0.322;SOR=1.063	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:70:70:2642:0:0:0.0,-18.9788,-237.931:0:0:70:71,0:0.183099,0.0:60.0,0.0:38.0956,0.0:0.0,0.0:0,0:0,0:59,12,0,0:.:.:.:0:.:0:.:-0.00035518	0/1:129.501:215:139:5198:76:2793:-198.446,0.0,-408.899:76:35:220:138,76:0.120805,0.171053:60.0,60.0:38.0112,38.2513:0.00069979,0.00131579:59,18:38,18:104,45,58,18:3967,0,7723:.:1:1:1:1:.:-0.0187789
chr3	52584715	.	A	G	2477.02	PASS	SOMATIC;NS=2;DP=408;DPB=408.0;AC=1;AN=3;AF=0.25;RO=310;AO=98;PRO=0.0;PAO=0.0;QR=11572;QA=3701;PQR=0.0;PQA=0.0;SRF=163;SRR=147;SAF=54;SAR=44;SRP=4.80352;SAP=5.22609;AB=0.335616;ABP=71.5455;RUN=1;RPP=10.1895;RPPR=5.27984;RPL=58.0;RPR=40.0;EPP=3.80798;EPPR=21.9511;DPRA=2.51724;ODDS=73.2999;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.404;Dels=0.0;FS=0.0;HaplotypeScore=7.748;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.058;QD=11.07;ReadPosRankSum=-1.159;SOR=0.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:115:116:4319:0:0:0.0,-31.4078,-388.709:0:0:115:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:292:194:7253:98:3701:-253.875,0.0,-573.355:98:34:292:188,96:37.0:0.342:2:3262,0,7166:.:1:1:.:.:1:-0.0187789
chr3	52584787	.	T	C	2615.8	PASS	SOMATIC;NS=2;DP=406;DPB=406.0;AC=1;AN=3;AF=0.25;RO=306;AO=100;PRO=0.0;PAO=0.0;QR=11562;QA=3832;PQR=0.0;PQA=0.0;SRF=153;SRR=153;SAF=57;SAR=43;SRP=3.0103;SAP=7.26639;AB=0.350877;ABP=58.059;RUN=1;RPP=5.18177;RPPR=3.46446;RPL=55.0;RPR=45.0;EPP=4.40004;EPPR=11.2136;DPRA=2.35537;ODDS=76.4105;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.709;Dels=0.0;FS=2.727;HaplotypeScore=9.7119;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.502;QD=12.06;ReadPosRankSum=1.52;SOR=0.889	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.791:117:121:4575:0:0:0.0,-32.7587,-411.708:0:0:117:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:121.3955:285:185:6987:100:3832:-267.528,0.0,-551.29:100:35:285:180,96:38.0:0.345:2:3464,0,6910:.:1:1:.:.:1:-0.0187789
chr3	52610651	.	T	A	2835.72	PASS	SOMATIC;NS=2;DP=404;DPB=404.0;AC=1;AN=3;AF=0.25;RO=296;AO=108;PRO=0.0;PAO=0.0;QR=11536;QA=4117;PQR=0.0;PQA=0.0;SRF=142;SRR=154;SAF=55;SAR=53;SRP=4.06669;SAP=3.09072;AB=0.363946;ABP=50.2804;RUN=1;RPP=6.95112;RPPR=3.74391;RPL=61.0;RPR=47.0;EPP=4.2971;EPPR=11.4908;DPRA=0.0;ODDS=66.5047;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8981;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.131;Dels=0.0;FS=0.924;HaplotypeScore=6.7989;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.102;QD=12.63;ReadPosRankSum=0.338;SOR=0.642	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.481:105:109:4228:1:16:0.0,-28.3647,-379.077:1:1:105:100,1:.:0.009901:0:.:.:.:0:.:.:0:-0.00035518	0/1:120.7405:294:187:7308:107:4101:-289.23,0.0,-577.658:107:36:294:178,102:38.0:0.363:2:3742,0,7297:.:1:1:.:.:1:-0.0187789
chr3	52643307	.	A	G	3143.28	PASS	SOMATIC;NS=2;DP=362;DPB=362.0;AC=1;AN=3;AF=0.25;RO=248;AO=114;PRO=0.0;PAO=0.0;QR=9604;QA=4431;PQR=0.0;PQA=0.0;SRF=172;SRR=76;SAF=68;SAR=46;SRP=83.705;SAP=12.2295;AB=0.401408;ABP=26.9882;RUN=1;RPP=4.9151;RPPR=45.9144;RPL=52.0;RPR=62.0;EPP=12.2295;EPPR=3.04532;DPRA=3.64103;ODDS=49.6768;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.487;Dels=0.0;FS=7.852;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.657;QD=14.5;ReadPosRankSum=0.276;SOR=0.39	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.745:76:78:3036:0:0:0.0,-21.1484,-273.349:0:0:76:75,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:119.8725:284:170:6568:114:4431:-321.613,0.0,-513.841:114:40:284:163,109:39.0:0.4:2:4146,0,6506:.:1:1:.:.:1:-0.0187789
chr3	52643685	.	T	C	3166.83	PASS	SOMATIC;NS=2;DP=417;DPB=417.0;AC=1;AN=3;AF=0.25;RO=298;AO=118;PRO=0.0;PAO=0.0;QR=11561;QA=4493;PQR=0.0;PQA=0.0;SRF=162;SRR=136;SAF=52;SAR=66;SRP=7.93619;SAP=6.61715;AB=0.389439;ABP=35.1811;RUN=1;RPP=3.0103;RPPR=15.8643;RPL=59.0;RPR=59.0;EPP=3.0103;EPPR=9.56844;DPRA=2.65789;ODDS=72.1291;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986577;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.399;Dels=0.0;FS=17.46;HaplotypeScore=10.7227;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.229;QD=13.49;ReadPosRankSum=1.137;SOR=0.745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:114:4431:0:0:0.0,-30.8993,-398.782:0:0:111:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:302:184:7130:118:4493:-322.321,0.0,-559.529:118:39:301:179,113:37.0:0.382:2:4101,0,7058:.:1:1:.:.:1:-0.0187789
chr3	52676065	.	C	T	1212.6	PASS	SOMATIC;NS=2;DP=214;DPB=247.45;AC=2;AN=3;AF=0.25;RO=78;AO=37;PRO=11.7;PAO=12.5;QR=2894;QA=1050;PQR=410.483;PQA=395.0;SRF=14;SRR=64;SAF=7;SAR=30;SRP=72.6088;SAP=34.0565;AB=0.211429;ABP=129.589;RUN=1;RPP=16.2152;RPPR=4.01252;RPL=26.0;RPR=11.0;EPP=3.06899;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=8;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=1.622;Dels=0.03;FS=0.0;HaplotypeScore=127.083;MLEAC=1;MLEAF=0.5;MQ=60.79;MQRankSum=2.156;QD=8.22;ReadPosRankSum=0.551;SOR=0.689	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:0:0:-7.72313,-37.5416,-353.378:0:0:37:.:.:.:.:1:.:.:.:-0.00035518	0/1:117.266:204:56:2082:37:1050:-124.38,0.0,-571.658:59:30:188:133,82:1992,0,3303:.:1:1:.:.:.:-0.0187789
chr3	52676065	.	C	A	1212.6	REJECT	NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=16;PRO=11.7;PAO=4.0;QR=2894;QA=292;PQR=410.483;PQA=81.0;SRF=14;SRR=64;SAF=2;SAR=14;SRP=72.6088;SAP=22.5536;AB=0.0747664;ABP=339.122;RUN=1;RPP=3.55317;RPPR=4.01252;RPL=7.0;RPR=9.0;EPP=7.89611;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=8;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:2:16:-7.72313,-35.4705,-350.909:2:5:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:14:276:-124.38,-152.746,-739.643:14:9:162:.:.:1:.:.:.:-0.0187789
chr3	52676065	.	C	CA	1212.6	REJECT	NS=2;DP=214;DPB=247.45;AC=2;AN=3;AF=0.25;RO=78;AO=14;PRO=11.7;PAO=9.2;QR=2894;QA=353;PQR=410.483;PQA=288.983;SRF=14;SRR=64;SAF=2;SAR=12;SRP=72.6088;SAP=18.5208;AB=0.0654206;ABP=354.058;RUN=1;RPP=3.0103;RPPR=4.01252;RPL=7.0;RPR=7.0;EPP=3.0103;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=8;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59.7718:39:22:812:5:142:-7.72313,0.0,-71.5348:5:14:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:9:211:-124.38,-124.174,-305.705:9:6:162:.:.:1:.:.:.:-0.0187789
chr3	52676065	.	CA	C	1212.6	PASS	SOMATIC;NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=27;PRO=11.7;PAO=8.7;QR=2894;QA=738;PQR=410.483;PQA=288.733;SRF=14;SRR=64;SAF=4;SAR=23;SRP=72.6088;SAP=32.0437;AB=0.126168;ABP=262.775;RUN=1;RPP=3.73412;RPPR=4.01252;RPL=15.0;RPR=12.0;EPP=5.02092;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=8;MEANALT=13.0;LEN=1;MQM=60.3704;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.731;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.79;MQRankSum=1.554;QD=3.2;RPA=13,12;RU=A;ReadPosRankSum=0.031;SOR=0.755;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:2:48:-7.72313,-11.6419,-146.424:2:5:37:.:.:.:.:1:.:.:.:-0.00035518	./1:117.266:204:56:2082:25:690:-124.38,-83.1584,-271.905:42:22:180:140,59:802,0,2625:.:1:1:.:.:.:-0.0187789
chr3	52676065	.	CA	T	1212.6	PASS	SOMATIC;NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=15;PRO=11.7;PAO=10.5;QR=2894;QA=434;PQR=410.483;PQA=333.0;SRF=14;SRR=64;SAF=2;SAR=13;SRP=72.6088;SAP=20.5268;AB=0.0857143;ABP=263.897;RUN=1;RPP=6.62942;RPPR=4.01252;RPL=10.0;RPR=5.0;EPP=3.15506;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=complex;CIGAR=1X1D18M;NUMALT=8;MEANALT=18.0;LEN=19;MQM=70.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:0:0:-7.72313,-37.5416,-353.378:0:0:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:15:434:-124.38,-54.4999,-632.577:15:9:162:.:.:1:.:.:.:-0.0187789
chr3	52676065	.	CAA	C	1212.6	REJECT	NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=7;PRO=11.7;PAO=6.5;QR=2894;QA=180;PQR=410.483;PQA=228.333;SRF=14;SRR=64;SAF=0;SAR=7;SRP=72.6088;SAP=18.2106;AB=0.0327103;ABP=408.893;RUN=1;RPP=3.32051;RPPR=4.01252;RPL=4.0;RPR=3.0;EPP=3.32051;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=8;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:2:44:-7.72313,-16.2387,-151.547:2:5:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:5:136:-124.38,-128.952,-338.299:5:3:162:.:.:1:.:.:.:-0.0187789
chr3	52676078	.	AG	A	1212.6	REJECT	NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=2;PRO=11.7;PAO=7.2;QR=2894;QA=53;PQR=410.483;PQA=252.983;SRF=14;SRR=64;SAF=1;SAR=1;SRP=72.6088;SAP=3.0103;AB=0.0512821;ABP=71.2168;RUN=1;RPP=3.0103;RPPR=4.01252;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=del;CIGAR=14M1D5M;NUMALT=8;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:2:53:-7.72313,-10.0025,-82.6211:2:5:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:0:0:-124.38,-140.637,-324.41:0:0:162:.:.:1:.:.:.:-0.0187789
chr3	52676080	.	C	A	1212.6	REJECT	NS=2;DP=214;DPB=247.45;AC=2;AN=2;AF=0.0;RO=78;AO=3;PRO=11.7;PAO=7.7;QR=2894;QA=48;PQR=410.483;PQA=271.483;SRF=14;SRR=64;SAF=3;SAR=0;SRP=72.6088;SAP=9.52472;AB=0.0140187;ABP=442.013;RUN=1;RPP=9.52472;RPPR=4.01252;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=5.79424;DPRA=0.0;ODDS=13.7637;GTI=0;TYPE=snp;CIGAR=15M1X4M;NUMALT=8;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.7718:39:22:812:2:32:-7.72313,-11.8929,-84.5155:2:5:37:.:.:1:.:.:.:-0.00035518	./1:135.532:175:56:2082:1:16:-124.38,-138.926,-316.32:1:1:162:.:.:1:.:.:.:-0.0187789
chr3	52692359	.	C	G	1936.4	PASS	SOMATIC;NS=2;DP=255;DPB=255.0;AC=1;AN=3;AF=0.25;RO=182;AO=73;PRO=0.0;PAO=0.0;QR=6963;QA=2852;PQR=0.0;PQA=0.0;SRF=46;SRR=136;SAF=21;SAR=52;SRP=99.6528;SAP=31.5964;AB=0.374359;ABP=29.7472;RUN=1;RPP=18.746;RPPR=95.4053;RPL=48.0;RPR=25.0;EPP=9.70319;EPPR=3.2012;DPRA=3.25;ODDS=38.4694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983516;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.045;Dels=0.0;FS=2.98;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.531;QD=13.3;ReadPosRankSum=0.72;SOR=0.464	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.585:59:60:2296:0:0:0.0,-16.2811,-206.837:0:0:59:59,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:195:122:4667:73:2852:-203.761,0.0,-367.022:73:37:195:115,72:39.0:0.394:2:2622,0,4609:.:1:1:.:.:1:-0.0187789
chr3	61511324	.	G	A	6563.71	REJECT	NS=2;DP=396;DPB=452.0;AC=2;AN=4;AF=0.5;RO=222;AO=230;PRO=0.0;PAO=0.0;QR=8377;QA=8790;PQR=0.0;PQA=0.0;SRF=92;SRR=130;SAF=93;SAR=137;SRP=17.1347;SAP=21.2884;AB=0.50885;ABP=3.31777;RUN=1;RPP=6.06924;RPPR=6.17948;RPL=124.0;RPR=106.0;EPP=18.1162;EPPR=4.92746;DPRA=0.0;ODDS=341.322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4245;Dels=0.0;FS=0.1995;HaplotypeScore=8.6927;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.121;QD=17.655;ReadPosRankSum=-0.4405;SOR=0.726;ClippingRankSum=0.518	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.598:111:60:2218:51:1991:-149.147,0.0,-169.54:51:46:111:60,51:1819,0,2076:1:.:1:.:.:.:-0.00035518	0/1:117.598:341:162:6159:179:6799:-519.205,0.0,-461.63:179:52:341:162,179:6570,0,5830:.:1:1:.:.:.:-0.0187789
chr3	66001741	.	A	AT	2229.85	REJECT	NS=2;DP=401;DPB=443.0;AC=2;AN=4;AF=0.5;RO=302;AO=99;PRO=8.5;PAO=8.5;QR=11555;QA=3748;PQR=186.0;PQA=186.0;SRF=167;SRR=135;SAF=50;SAR=49;SRP=10.3732;SAP=3.03223;AB=0.246883;ABP=226.163;RUN=1;RPP=3.03223;RPPR=4.85102;RPL=49.0;RPR=50.0;EPP=3.55865;EPPR=3.03906;DPRA=0.0;ODDS=191.591;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986755;technology.ILLUMINA=1.0;END=66001741;HOMLEN=1;HOMSEQ=T;SVLEN=1;SVTYPE=INS;BaseQRankSum=-0.822;FS=8.306;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.521;QD=16.78;ReadPosRankSum=0.066;SOR=0.941;ClippingRankSum=-0.753	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:38,65:51:55:94:122.9965:93:43:1643:51:1902:-145.742,0.0,-122.427:1598,0,1272:1:.:1:1:.:.:-0.00035518	0/1:121,66:57:25:247:146.993:307:259:9912:48:1846:-82.894,0.0,-808.407:.:.:.:1:1:.:.:-0.0187789
chr3	69691682	.	G	A	5140.845	REJECT	NS=2;DP=355;DPB=408.0;AC=2;AN=4;AF=0.5;RO=214;AO=194;PRO=0.0;PAO=0.0;QR=8154;QA=7401;PQR=0.0;PQA=0.0;SRF=142;SRR=72;SAF=138;SAR=56;SRP=52.7309;SAP=78.2731;AB=0.47549;ABP=5.13919;RUN=1;RPP=71.1095;RPPR=49.9303;RPL=58.0;RPR=136.0;EPP=3.05507;EPPR=10.9656;DPRA=0.0;ODDS=327.651;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0467;PAIRED=0.994845;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9405;Dels=0.01;FS=2.444;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.717;QD=13.58;ReadPosRankSum=-0.4385;SOR=0.8605;ClippingRankSum=-1.138	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6905:106:51:1922:56:2160:-165.413,0.0,-144.006:54:51:106:53,52:1213,0,1745:1:.:1:.:.:.:-0.00035518	0/1:119.6905:301:163:6232:138:5241:-389.906,0.0,-479.041:138:46:301:163,138:4964,0,6075:.:1:1:.:.:.:-0.0187789
chr3	69691954	.	C	T	6382.34	REJECT	NS=2;DP=359;DPB=410.0;AC=2;AN=4;AF=0.5;RO=185;AO=225;PRO=0.0;PAO=0.0;QR=7085;QA=8590;PQR=0.0;PQA=0.0;SRF=79;SRR=106;SAF=91;SAR=134;SRP=11.5671;SAP=20.855;AB=0.54878;ABP=11.4843;RUN=1;RPP=3.4832;RPPR=3.02204;RPL=109.0;RPR=116.0;EPP=3.79203;EPPR=4.43056;DPRA=0.0;ODDS=283.082;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991111;PAIREDR=0.989189;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4255;Dels=0.0;FS=1.5795;HaplotypeScore=6.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0625;QD=20.2;ReadPosRankSum=0.0035;SOR=0.9005;ClippingRankSum=-1.052	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4595:99:43:1671:57:2171:-168.31,0.0,-123.31:56:57:99:42,56:2054,0,1464:1:.:1:.:.:.:-0.00035518	0/1:117.4595:309:142:5414:168:6419:-493.819,0.0,-403.02:168:54:309:141,168:6252,0,5072:.:1:1:.:.:.:-0.0187789
chr3	70110627	.	T	G	7523.625	REJECT	NS=2;DP=347;DPB=401.0;AC=3;AN=4;AF=0.75;RO=119;AO=282;PRO=0.0;PAO=0.0;QR=4615;QA=10556;PQR=0.0;PQA=0.0;SRF=77;SRR=42;SAF=160;SAR=122;SRP=25.3637;SAP=14.1295;AB=0.59661;ABP=26.9259;RUN=1;RPP=3.50312;RPPR=7.11603;RPL=145.0;RPR=137.0;EPP=4.11914;EPPR=7.11603;DPRA=0.0;ODDS=66.9837;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8319;PAIRED=0.996454;PAIREDR=0.983193;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.479;Dels=0.0;FS=3.238;HaplotypeScore=4.8463;MLEAC=1;MLEAF=0.75;MQ=59.97;MQRankSum=-0.068;QD=27.985;ReadPosRankSum=1.067;SOR=0.6985	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.3945:105:0:0:106:3964:-356.727,-28.6647,0.0:105:100:105:0,105:4120,314,0:1:.:1:.:.:.:-0.00035518	0/1:122.3945:294:119:4615:176:6592:-513.038,0.0,-335.167:176:60:294:118,176:6449,0,4271:.:1:1:.:.:.:-0.0187789
chr3	70110821	.	C	A	13012.349999999999	REJECT	NS=2;DP=350;DPB=411.0;AC=4;AN=4;AF=1.0;RO=0;AO=411;PRO=0.0;PAO=0.0;QR=0;QA=15498;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=223;SAR=188;SRP=0.0;SAP=9.48245;AB=0.0;ABP=0.0;RUN=1;RPP=10.2433;RPPR=0.0;RPL=187.0;RPR=224.0;EPP=8.76391;EPPR=0.0;DPRA=0.0;ODDS=79.6912;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992701;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8796;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.22;SOR=0.8115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.916:119:0:0:121:4502:-405.12,-32.7344,0.0:119:100:119:0,118:4809,353,0:1:.:1:.:.:.:-0.00035518	1/1:124.916:289:0:0:290:10996:-989.028,-78.4958,0.0:289:100:289:0,289:12173,846,0:.:1:1:.:.:.:-0.0187789
chr3	70115600	.	T	G	14617.099999999999	REJECT	NS=2;DP=390;DPB=446.0;AC=4;AN=4;AF=1.0;RO=0;AO=446;PRO=0.0;PAO=0.0;QR=0;QA=16899;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=213;SRP=0.0;SAP=4.95781;AB=0.0;ABP=0.0;RUN=1;RPP=19.3888;RPPR=0.0;RPL=194.0;RPR=252.0;EPP=34.1704;EPPR=0.0;DPRA=0.0;ODDS=73.5686;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997758;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.46;SOR=0.7675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:111:4233:-380.984,-30.0754,0.0:110:100:110:0,109:4201,327,0:1:.:1:.:.:.:-0.00035518	1/1:129.501:335:0:0:335:12666:-1139.18,-90.6644,0.0:335:100:335:0,335:14153,987,0:.:1:1:.:.:.:-0.0187789
chr3	71015021	.	G	T	1351.115	REJECT	NS=2;DP=275;DPB=311.0;AC=2;AN=4;AF=0.5;RO=237;AO=74;PRO=0.0;PAO=0.0;QR=9157;QA=2804;PQR=0.0;PQA=0.0;SRF=158;SRR=79;SAF=55;SAR=19;SRP=60.1924;SAP=41.0404;AB=0.237942;ABP=188.521;RUN=1;RPP=19.9126;RPPR=49.1976;RPL=25.0;RPR=49.0;EPP=3.12768;EPPR=14.2342;DPRA=0.0;ODDS=182.243;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.486;Dels=0.0;FS=3.783;HaplotypeScore=4.9323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.642;QD=9.095;ReadPosRankSum=0.288;SOR=1.2235;ClippingRankSum=0.556	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:70:41:1584:30:1117:-81.3381,0.0,-123.402:29:41:70:41,28:958,0,1455:1:.:1:.:.:.:-0.00035518	0/1:129.501:240:196:7573:44:1687:-86.7311,0.0,-616.214:44:18:240:196,44:1160,0,7771:.:1:1:.:.:.:-0.0187789
chr3	71247572	.	A	T	804.5025	REJECT	NS=2;DP=83;DPB=94.0;AC=2;AN=4;AF=0.5;RO=43;AO=48;PRO=0.0;PAO=0.0;QR=1387;QA=1401;PQR=0.0;PQA=0.0;SRF=20;SRR=23;SAF=34;SAR=14;SRP=3.46479;SAP=21.1059;AB=0.510638;ABP=3.1027;RUN=1;RPP=90.593;RPPR=87.8997;RPL=46.0;RPR=2.0;EPP=21.1059;EPPR=4.27278;DPRA=0.0;ODDS=27.2774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9583;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7585;Dels=0.0;FS=8.958;HaplotypeScore=22.0157;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.023;QD=14.14;ReadPosRankSum=1.0175;SOR=2.4345;ClippingRankSum=-0.424	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:108.696:21:7:216:14:406:-31.0149,0.0,-14.2405:13:63:20:8,12:376,0,260:1:.:1:.:.:.:-0.00035518	0/1:129.501:72:36:1171:34:995:-70.7389,0.0,-86.9788:34:49:70:36,34:812,0,1057:.:1:1:.:.:.:-0.0187789
chr3	72033035	.	G	C	5080.52	REJECT	NS=2;DP=314;DPB=358.0;AC=2;AN=4;AF=0.5;RO=177;AO=181;PRO=0.0;PAO=0.0;QR=6859;QA=6878;PQR=0.0;PQA=0.0;SRF=118;SRR=59;SAF=124;SAR=57;SRP=45.7159;SAP=56.8652;AB=0.505587;ABP=3.10735;RUN=1;RPP=21.2579;RPPR=18.0389;RPL=71.0;RPR=110.0;EPP=7.34125;EPPR=9.50018;DPRA=0.0;ODDS=231.29;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99435;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6645;Dels=0.0;FS=0.241;HaplotypeScore=5.8895;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2195;QD=16.81;ReadPosRankSum=-0.496;SOR=0.7305;ClippingRankSum=2.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1775:86:49:1918:38:1402:-102.631,0.0,-149.103:37:44:86:48,37:1224,0,1707:1:.:1:.:.:.:-0.00035518	0/1:119.1775:270:128:4941:143:5476:-419.149,0.0,-371.047:143:53:270:127,143:5307,0,4685:.:1:1:.:.:.:-0.0187789
chr3	78663956	.	G	A	5249.675	REJECT	NS=2;DP=144;DPB=173.435;AC=2;AN=3;AF=0.5;RO=24;AO=64;PRO=10.6667;PAO=22.75;QR=875;QA=2157;PQR=365.333;PQA=769.167;SRF=2;SRR=22;SAF=6;SAR=58;SRP=39.2015;SAP=94.755;AB=0.444444;ABP=6.8707;RUN=1;RPP=3.14602;RPPR=3.37221;RPL=33.0;RPR=31.0;EPP=4.23175;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=snp;CIGAR=1X22M;NUMALT=6;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=6.839;Dels=0.0;FS=0.4205;HaplotypeScore=61.1563;MLEAC=1;MLEAF=0.75;MQ=60.03;MQRankSum=-0.122;QD=26.435;ReadPosRankSum=0.783;SOR=1.353	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:76.8168:41:0:0:17:564:-233.718,-28.5224,-7.60808:34:81:39:0,52:1969,155,0:1:.:1:.:.:.:-0.00035518	0/1:121.432:145:24:875:47:1593:-437.89,0.0,-178.572:80:56:138:64,114:3987,0,1413:.:1:1:.:.:.:-0.0187789
chr3	78663956	.	GAG	AAA	6540.58	REJECT	SOMATIC;NS=2;DP=144;DPB=173.435;AC=1;AN=3;AF=0.0;RO=24;AO=7;PRO=10.6667;PAO=2.25;QR=875;QA=73;PQR=365.333;PQA=79.5;SRF=2;SRR=22;SAF=0;SAR=7;SRP=39.2015;SAP=18.2106;AB=0.0486111;ABP=257.857;RUN=1;RPP=10.7656;RPPR=3.37221;RPL=1.0;RPR=6.0;EPP=10.7656;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=complex;CIGAR=1X1M1X20M;NUMALT=6;MEANALT=12.0;LEN=23;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:54.6336:31:0:0:1:14:-233.718,-198.118,-194.606:1:4:27:.:.:.:.:.:.:-0.00035518	./1:143.864:113:24:875:6:59:-437.89,-384.887,-599.253:6:6:98:.:.:1:.:.:.:-0.0187789
chr3	78663956	.	GAG	AAGA	6540.58	REJECT	SOMATIC;NS=2;DP=144;DPB=173.435;AC=1;AN=3;AF=0.0;RO=24;AO=7;PRO=10.6667;PAO=21.75;QR=875;QA=166;PQR=365.333;PQA=662.167;SRF=2;SRR=22;SAF=1;SAR=6;SRP=39.2015;SAP=10.7656;AB=0.0486111;ABP=257.857;RUN=1;RPP=3.32051;RPPR=3.37221;RPL=4.0;RPR=3.0;EPP=3.32051;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=complex;CIGAR=1X2M1I20M;NUMALT=6;MEANALT=12.0;LEN=24;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:54.6336:31:0:0:2:50:-233.718,-77.4437,-61.1235:2:7:27:.:.:.:.:.:.:-0.00035518	./1:143.864:113:24:875:5:116:-437.89,-124.241,-314.284:5:5:98:.:.:1:.:.:.:-0.0187789
chr3	78663956	.	GAGA	AAG	6540.58	REJECT	NS=2;DP=144;DPB=173.435;AC=2;AN=2;AF=0.25;RO=24;AO=12;PRO=10.6667;PAO=19.25;QR=875;QA=340;PQR=365.333;PQA=667.167;SRF=2;SRR=22;SAF=1;SAR=11;SRP=39.2015;SAP=21.1059;AB=0.0833333;ABP=220.158;RUN=1;RPP=3.0103;RPPR=3.37221;RPL=6.0;RPR=6.0;EPP=3.73412;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=complex;CIGAR=1X2M1D19M;NUMALT=6;MEANALT=12.0;LEN=22;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.6336:31:0:0:5:128:-233.718,-74.8239,-57.8525:5:19:27:.:.:1:.:.:.:-0.00035518	./1:143.864:113:24:875:7:212:-437.89,-125.59,-316.028:7:7:98:.:.:1:.:.:.:-0.0187789
chr3	78663958	.	G	A	6540.58	REJECT	SOMATIC;NS=2;DP=144;DPB=173.435;AC=1;AN=3;AF=0.0;RO=24;AO=5;PRO=10.6667;PAO=2.66667;QR=875;QA=109;PQR=365.333;PQA=92.3333;SRF=2;SRR=22;SAF=0;SAR=5;SRP=39.2015;SAP=13.8677;AB=0.0347222;ABP=273.781;RUN=1;RPP=6.91895;RPPR=3.37221;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=snp;CIGAR=2M1X20M;NUMALT=6;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:54.6336:31:0:0:2:67:-233.718,-228.222,-227.68:2:7:27:.:.:.:.:.:.:-0.00035518	./1:143.864:113:24:875:3:42:-437.89,-449.282,-601.494:3:3:98:.:.:1:.:.:.:-0.0187789
chr3	78663958	.	GA	G	6540.58	REJECT	NS=2;DP=144;DPB=173.435;AC=2;AN=3;AF=0.0;RO=24;AO=6;PRO=10.6667;PAO=9.66667;QR=875;QA=144;PQR=365.333;PQA=329.333;SRF=2;SRR=22;SAF=1;SAR=5;SRP=39.2015;SAP=8.80089;AB=0.0530973;ABP=199.039;RUN=1;RPP=3.0103;RPPR=3.37221;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=3.37221;DPRA=0.0;ODDS=12.5826;GTI=0;TYPE=del;CIGAR=3M1D19M;NUMALT=6;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;ALERT;BaseQRankSum=0.274;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.822;QD=0.85;ReadPosRankSum=-0.274;SOR=1.085;ClippingRankSum=-0.761	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:66.8168:32:0:0:0:0:-233.718,-233.718,-233.718:4:12:30:25,8:79,0,502:1:.:.:.:.:.:-0.00035518	./1:143.864:113:24:875:6:144:-437.89,-433.327,-506.952:6:6:98:.:.:.:.:1:.:.:.:-0.0187789
chr3	78666765	.	T	C	3788.95	REJECT	NS=2;DP=168;DPB=194.0;AC=3;AN=4;AF=0.75;RO=53;AO=141;PRO=0.0;PAO=0.0;QR=2027;QA=5317;PQR=0.0;PQA=0.0;SRF=40;SRR=13;SAF=106;SAR=35;SRP=32.8783;SAP=80.6443;AB=0.629371;ABP=23.7987;RUN=1;RPP=56.6195;RPPR=17.8009;RPL=41.0;RPR=100.0;EPP=12.6356;EPPR=4.03458;DPRA=0.0;ODDS=32.8076;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981132;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.992;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.192;QD=28.415;ReadPosRankSum=-0.489;SOR=1.39	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.2035:50:0:0:51:1895:-170.748,-13.8222,0.0:50:100:50:0,49:2061,147,0:1:.:1:.:.:.:-0.00035518	0/1:119.0125:142:53:2027:90:3422:-269.177,0.0,-143.665:90:63:142:52,90:3406,0,1811:.:1:1:.:.:.:-0.0187789
chr3	78676467	.	A	G	9556.24	REJECT	NS=2;DP=254;DPB=293.0;AC=4;AN=4;AF=1.0;RO=0;AO=293;PRO=0.0;PAO=0.0;QR=0;QA=11286;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=62;SRP=0.0;SAP=214.681;AB=0.0;ABP=0.0;RUN=1;RPP=42.5044;RPPR=0.0;RPL=110.0;RPR=183.0;EPP=3.19558;EPPR=0.0;DPRA=0.0;ODDS=53.032;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993174;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.025;SOR=2.5565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:0:0:78:3006:-270.673,-21.1565,0.0:77:100:77:0,76:3255,229,0:1:.:1:.:.:.:-0.00035518	1/1:129.501:215:0:0:215:8280:-744.834,-58.2294,0.0:215:100:215:0,215:9290,641,0:.:1:1:.:.:.:-0.0187789
chr3	78685024	.	C	T	2970.3	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=283;AO=110;PRO=0.0;PAO=0.0;QR=10814;QA=4270;PQR=0.0;PQA=0.0;SRF=158;SRR=125;SAF=48;SAR=62;SRP=11.3662;SAP=6.87947;AB=0.367893;ABP=48.3352;RUN=1;RPP=3.72096;RPPR=3.20213;RPL=52.0;RPR=58.0;EPP=6.87947;EPPR=11.3662;DPRA=3.18085;ODDS=59.6008;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996466;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.443;Dels=0.0;FS=10.356;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.47;QD=12.96;ReadPosRankSum=-0.417;SOR=0.856	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:92:94:3564:0:0:0.0,-25.4583,-320.815:0:0:92:91,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:129.501:299:189:7250:110:4270:-303.104,0.0,-571.109:110:37:299:181,106:38.0:0.373:2:3904,0,7203:.:1:1:.:.:1:-0.0187789
chr3	89462238	.	ATTGT	A	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:35,0:35:0.2,0.0:60.0,0.0:36.8025,0.0:0.00617284,0.0:0,0:0,0:30,5,0,0:0:0:35:.:.:.:.:0:.:-0.00035518	0/1:60,45:105:0.0666667,0.0222222:60.0,60.4444:37.8261,38.7557:0.0,0.0:78,9:22,9:52,8,33,12:45:43:105:.:.:.:.:1:.:-0.0187789
chr3	89521602	.	T	TC	1261.06	REJECT	NS=2;DP=311;DPB=332.333;AC=2;AN=4;AF=0.5;RO=244;AO=64;PRO=13.5;PAO=13.5;QR=9325;QA=2423;PQR=460.0;PQA=460.0;SRF=145;SRR=99;SAF=44;SAR=20;SRP=21.8416;SAP=22.5536;AB=0.205788;ABP=236.838;RUN=1;RPP=14.0034;RPPR=92.0051;RPL=23.0;RPR=41.0;EPP=4.23175;EPPR=3.33068;DPRA=0.0;ODDS=88.4115;GTI=0;TYPE=ins;CIGAR=1M1I8M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.4688;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=89521602;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=-0.842;FS=2.001;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-1.065;QD=12.17;ReadPosRankSum=0.33;SOR=1.012;ClippingRankSum=-0.098	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:50,44:34:40:85:129.501:84:51:1942:34:1303:-94.2587,0.0,-151.796:1047,0,1712:1:.:1:1:.:.:-0.00035518	0/1:121,57:43:22:200:160.002:225:193:7383:30:1120:-40.344,0.0,-603.788:.:.:.:1:1:.:.:-0.0187789
chr3	89521664	.	G	A	2697.17	PASS	SOMATIC;NS=2;DP=424;DPB=424.0;AC=1;AN=3;AF=0.25;RO=320;AO=104;PRO=0.0;PAO=0.0;QR=12099;QA=3967;PQR=0.0;PQA=0.0;SRF=168;SRR=152;SAF=51;SAR=53;SRP=4.74748;SAP=3.09382;AB=0.345515;ABP=65.4059;RUN=1;RPP=7.10269;RPPR=3.25459;RPL=59.0;RPR=45.0;EPP=3.34437;EPPR=5.20892;DPRA=2.44715;ODDS=77.6534;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.1562;PAIRED=1.0;PAIREDR=0.996875;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.911;Dels=0.0;FS=0.926;HaplotypeScore=3.9239;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.056;QD=11.81;ReadPosRankSum=0.258;SOR=0.666	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:151.018:118:123:4664:0:0:0.0,-33.2985,-419.712:0:0:118:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00035518	0/1:125.009:301:197:7435:104:3967:-275.363,0.0,-587.254:104:35:301:190,99:38.0:0.339:2:3583,0,7352:.:1:1:.:.:1:-0.0187789
chr3	89521693	.	T	C	5050.9400000000005	REJECT	NS=2;DP=361;DPB=422.0;AC=2;AN=4;AF=0.5;RO=227;AO=195;PRO=0.0;PAO=0.0;QR=8736;QA=7448;PQR=0.0;PQA=0.0;SRF=103;SRR=124;SAF=82;SAR=113;SRP=7.22889;SAP=13.7118;AB=0.462085;ABP=8.27947;RUN=1;RPP=7.03031;RPPR=3.47903;RPL=107.0;RPR=88.0;EPP=6.22853;EPPR=7.22889;DPRA=0.0;ODDS=382.046;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1538;MQMR=60.0;PAIRED=0.994872;PAIREDR=0.995595;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.485;Dels=0.0;FS=2.289;HaplotypeScore=3.9325;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.087;QD=16.095;ReadPosRankSum=1.0045;SOR=0.7935;ClippingRankSum=0.641	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6375:121:57:2211:65:2475:-189.671,0.0,-165.927:64:53:121:57,64:2081,0,2006:1:.:1:.:.:.:-0.00035518	0/1:118.6375:299:170:6525:130:4973:-366.063,0.0,-505.664:130:43:299:169,130:4651,0,6348:.:1:1:.:.:.:-0.0187789
chr3	89521725	.	T	C	1763.705	REJECT	NS=2;DP=343;DPB=398.0;AC=2;AN=4;AF=0.5;RO=308;AO=88;PRO=0.0;PAO=0.0;QR=11419;QA=3259;PQR=0.0;PQA=0.0;SRF=120;SRR=188;SAF=33;SAR=55;SRP=35.6106;SAP=14.9534;AB=0.221106;ABP=271.902;RUN=1;RPP=19.6912;RPPR=4.02553;RPL=57.0;RPR=31.0;EPP=6.56362;EPPR=14.2907;DPRA=0.0;ODDS=64.4094;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1765;Dels=0.0;FS=0.8005;HaplotypeScore=11.6532;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.296;QD=9.025;ReadPosRankSum=-0.131;SOR=0.7895;ClippingRankSum=1.052	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.722:107:52:1947:57:2068:-156.613,0.0,-146.125:55:51:107:52,54:1782,0,1796:1:.:1:.:.:.:-0.00035518	0/1:117.722:289:256:9472:31:1191:-29.4862,0.0,-774.31:31:11:287:256,31:508,0,9636:.:1:1:.:.:.:-0.0187789
chr3	89613568	.	G	A	1096.28	REJECT	NS=1;DP=83;DPB=83.0;AC=1;AN=4;AF=0.5;RO=41;AO=42;PRO=0.0;PAO=0.0;QR=1541;QA=1537;PQR=0.0;PQA=0.0;SRF=20;SRR=21;SAF=22;SAR=20;SRP=3.06326;SAP=3.21711;AB=0.506024;ABP=3.03646;RUN=1;RPP=13.1438;RPPR=9.41879;RPL=14.0;RPR=28.0;EPP=8.18047;EPPR=5.60547;DPRA=0.0;ODDS=252.428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.732;FS=1.789;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.52;QD=16.1;ReadPosRankSum=0.067;SOR=0.612;ClippingRankSum=0.943	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2155:81:41:1541:42:1537:-115.903,0.0,-116.271:41:51:81:39,41:1316,0,1382:1:.:1:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0187789
chr3	89613664	.	G	A	1035.23	REJECT	NS=1;DP=79;DPB=79.0;AC=1;AN=4;AF=0.5;RO=41;AO=38;PRO=0.0;PAO=0.0;QR=1536;QA=1481;PQR=0.0;PQA=0.0;SRF=13;SRR=28;SAF=16;SAR=22;SRP=14.9269;SAP=5.06748;AB=0.481013;ABP=3.25768;RUN=1;RPP=3.9246;RPPR=18.3165;RPL=21.0;RPR=17.0;EPP=35.9253;EPPR=7.30028;DPRA=0.0;ODDS=238.371;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.181;FS=4.54;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.801;QD=14.1;ReadPosRankSum=1.431;SOR=0.33;ClippingRankSum=0.03	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4235:78:41:1536:38:1481:-111.933,0.0,-116.887:37:47:78:41,37:1142,0,1407:1:.:1:.:.:.:-0.00035518	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0187789
chr3	89625902	.	C	T	5794.6	REJECT	NS=2;DP=388;DPB=449.0;AC=2;AN=4;AF=0.5;RO=233;AO=216;PRO=0.0;PAO=0.0;QR=8864;QA=8259;PQR=0.0;PQA=0.0;SRF=131;SRR=102;SAF=122;SAR=94;SRP=10.8481;SAP=10.8919;AB=0.481069;ABP=4.40797;RUN=1;RPP=6.26751;RPPR=5.70367;RPL=99.0;RPR=117.0;EPP=28.1431;EPPR=5.10722;DPRA=0.0;ODDS=370.947;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.991416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4845;Dels=0.0;FS=6.4585;HaplotypeScore=9.6872;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.165;QD=16.8;ReadPosRankSum=0.5465;SOR=0.9405;ClippingRankSum=-1.136	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:119:57:2156:64:2449:-187.627,0.0,-161.244:62:52:119:57,61:2041,0,1861:1:.:1:.:.:.:-0.00035518	0/1:129.501:328:176:6708:152:5810:-433.751,0.0,-514.528:152:46:328:176,152:5501,0,6534:.:1:1:.:.:.:-0.0187789
chr3	97517472	.	C	T	5785.05	REJECT	NS=2;DP=215;DPB=243.0;AC=2;AN=4;AF=0.5;RO=48;AO=195;PRO=0.0;PAO=0.0;QR=1840;QA=7492;PQR=0.0;PQA=0.0;SRF=32;SRR=16;SAF=133;SAR=62;SRP=14.5915;SAP=59.1456;AB=0.802469;ABP=196.11;RUN=1;RPP=171.483;RPPR=4.6389;RPL=36.0;RPR=159.0;EPP=3.11052;EPPR=7.5342;DPRA=0.0;ODDS=81.6959;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984615;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4955;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.987;QD=27.84;ReadPosRankSum=0.031;SOR=0.7375;ClippingRankSum=0.664	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.6825:53:22:854:32:1249:-97.8768,0.0,-62.2906:32:59:53:21,32:1194,0,759:1:.:1:.:.:.:-0.000311562	0/1:120.6825:188:26:986:163:6243:-510.468,0.0,-37.5207:162:86:188:26,162:6361,0,535:.:1:1:.:.:.:-8.25206e-06
chr3	100529408	.	AT	A	931.232	REJECT	NS=2;DP=227;DPB=259.824;AC=2;AN=4;AF=0.5;RO=180;AO=46;PRO=49.5;PAO=26.5;QR=6862;QA=1639;PQR=1793.0;PQA=918.0;SRF=45;SRR=135;SAF=12;SAR=34;SRP=100.727;SAP=25.858;AB=0.202643;ABP=177.35;RUN=1;RPP=7.73089;RPPR=16.956;RPL=28.0;RPR=18.0;EPP=12.2627;EPPR=22.3123;DPRA=0.0;ODDS=21.4531;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978261;PAIREDR=0.994444;technology.ILLUMINA=1.0;BaseQRankSum=-0.614;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=0.761;QD=10.17;ReadPosRankSum=-0.135;SOR=0.613;ClippingRankSum=-0.38	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.703:60:25:959:28:1004:-90.4445,0.0,-100.562:30:51:60:35,33:800,0,878:1:.:1:.:.:.:-0.000311562	0/1:93.1695:174:155:5903:18:635:-11.4854,0.0,-550.467:18:10:173:.:.:.:.:1:.:.:.:-8.25206e-06
chr3	105422844	.	C	T	11215.65	REJECT	NS=2;DP=301;DPB=344.0;AC=4;AN=4;AF=1.0;RO=0;AO=344;PRO=0.0;PAO=0.0;QR=0;QA=13013;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=101;SRP=0.0;SAP=130.294;AB=0.0;ABP=0.0;RUN=1;RPP=27.2752;RPPR=0.0;RPL=141.0;RPR=203.0;EPP=4.62628;EPPR=0.0;DPRA=0.0;ODDS=56.6602;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9826;MQMR=0.0;PAIRED=0.991279;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.02;SOR=1.8775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:82:0:0:84:3114:-280.332,-22.7322,0.0:82:100:82:0,80:3253,240,0:1:.:1:.:.:.:-0.000311562	1/1:129.501:259:0:0:260:9899:-890.386,-70.3771,0.0:259:100:259:0,258:10950,759,0:.:1:1:.:.:.:-8.25206e-06
chr3	114030477	.	C	CA	107.788	REJECT	NS=2;DP=192;DPB=223.938;AC=2;AN=3;AF=0.25;RO=150;AO=21;PRO=30.8333;PAO=16.8333;QR=5686;QA=702;PQR=1135.33;PQA=609.333;SRF=38;SRR=112;SAF=6;SAR=15;SRP=82.2835;SAP=11.386;AB=0.109375;ABP=257.48;RUN=1;RPP=11.386;RPPR=51.7092;RPL=15.0;RPR=6.0;EPP=3.94093;EPPR=4.45795;DPRA=0.0;ODDS=5.00321;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.9878:55:43:1623:5:140:-3.9114,-2.42921,-138.522:5:9:53:.:.:1:.:.:.:-0.000311562	0/1:103.54:137:107:4063:16:562:-13.448,0.0,-374.846:16:12:131:.:.:1:.:.:.:-8.25206e-06
chr3	114030477	.	CA	C	107.788	REJECT	NS=2;DP=192;DPB=223.938;AC=2;AN=3;AF=0.25;RO=150;AO=13;PRO=30.8333;PAO=15.3333;QR=5686;QA=465;PQR=1135.33;PQA=564.333;SRF=38;SRR=112;SAF=2;SAR=11;SRP=82.2835;SAP=16.5402;AB=0.0677083;ABP=314.662;RUN=1;RPP=16.5402;RPPR=51.7092;RPL=11.0;RPR=2.0;EPP=7.18621;EPPR=4.45795;DPRA=0.0;ODDS=5.00321;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:19.9878:55:43:1623:5:191:-3.9114,0.0,-136.332:5:9:53:.:.:1:.:.:.:-0.000311562	./1:103.54:137:107:4063:8:274:-13.448,-24.2954,-407.248:8:6:131:.:.:1:.:.:.:-8.25206e-06
chr3	118509389	.	G	C	1185.55	REJECT	NS=2;DP=377;DPB=426.0;AC=2;AN=4;AF=0.5;RO=356;AO=70;PRO=0.0;PAO=0.0;QR=13553;QA=2665;PQR=0.0;PQA=0.0;SRF=183;SRR=173;SAF=35;SAR=35;SRP=3.62026;SAP=3.0103;AB=0.164319;ABP=419.953;RUN=1;RPP=3.50664;RPPR=18.2594;RPL=33.0;RPR=37.0;EPP=6.1124;EPPR=17.0639;DPRA=0.0;ODDS=44.1813;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994382;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4455;Dels=0.0;FS=5.1145;HaplotypeScore=4.8807;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1875;QD=6.79;ReadPosRankSum=0.25;SOR=0.9075;ClippingRankSum=1.044	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2035:95:57:2171:39:1449:-104.43,0.0,-169.416:39:41:95:55,39:1212,0,1986:1:.:1:.:.:.:-0.000311562	0/1:119.2035:329:299:11382:31:1216:-20.0258,0.0,-934.364:31:9:329:298,31:396,0,11649:.:1:1:.:.:.:-8.25206e-06
chr3	121151812	.	G	C	5157.045	REJECT	NS=2;DP=349;DPB=407.0;AC=2;AN=4;AF=0.5;RO=212;AO=195;PRO=0.0;PAO=0.0;QR=8102;QA=7452;PQR=0.0;PQA=0.0;SRF=107;SRR=105;SAF=98;SAR=97;SRP=3.05127;SAP=3.02144;AB=0.479115;ABP=4.55221;RUN=1;RPP=44.4464;RPPR=5.63246;RPL=67.0;RPR=128.0;EPP=3.02144;EPPR=5.01789;DPRA=0.0;ODDS=349.458;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989744;PAIREDR=0.995283;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9375;Dels=0.0;FS=0.564;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3645;QD=17.38;ReadPosRankSum=-0.1945;SOR=0.774;ClippingRankSum=1.142	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:114:53:2038:62:2338:-179.256,0.0,-152.276:61:53:114:53,60:2104,0,1810:1:.:1:.:.:.:-0.000311562	0/1:129.501:291:159:6064:133:5114:-380.902,0.0,-466.368:133:46:291:158,133:4843,0,5872:.:1:1:.:.:.:-8.25206e-06
chr3	121154974	.	T	C	5137.92	REJECT	NS=2;DP=327;DPB=369.0;AC=2;AN=4;AF=0.5;RO=187;AO=182;PRO=0.0;PAO=0.0;QR=7283;QA=6968;PQR=0.0;PQA=0.0;SRF=107;SRR=80;SAF=126;SAR=56;SRP=11.4756;SAP=61.473;AB=0.493225;ABP=3.15742;RUN=1;RPP=8.78498;RPPR=4.97275;RPL=80.0;RPR=102.0;EPP=8.78498;EPPR=28.6615;DPRA=0.0;ODDS=218.837;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994505;PAIREDR=0.983957;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0535;Dels=0.0;FS=8.169;HaplotypeScore=6.8295;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.592;QD=16.865;ReadPosRankSum=-0.123;SOR=1.1955;ClippingRankSum=-0.252	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:46:1789:35:1321:-96.9785,0.0,-139.106:35:43:80:45,35:1218,0,1681:1:.:1:.:.:.:-0.000311562	0/1:129.501:287:141:5494:147:5647:-429.917,0.0,-416.135:147:51:287:139,147:5473,0,5201:.:1:1:.:.:.:-8.25206e-06
chr3	121186422	.	G	A	5656.645	REJECT	NS=2;DP=360;DPB=415.0;AC=2;AN=4;AF=0.5;RO=217;AO=198;PRO=0.0;PAO=0.0;QR=8215;QA=7721;PQR=0.0;PQA=0.0;SRF=111;SRR=106;SAF=102;SAR=96;SRP=3.26047;SAP=3.40511;AB=0.477108;ABP=4.89922;RUN=1;RPP=3.0103;RPPR=3.02031;RPL=99.0;RPR=99.0;EPP=4.58955;EPPR=18.2306;DPRA=0.0;ODDS=333.84;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.2185;Dels=0.0;FS=0.0;HaplotypeScore=3.924;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1085;QD=17.13;ReadPosRankSum=0.8965;SOR=0.6905;ClippingRankSum=-0.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.3215:109:60:2274:50:1946:-145.341,0.0,-174.852:50:45:109:59,50:1778,0,2086:1:.:1:.:.:.:-0.000311562	0/1:123.3215:305:157:5941:148:5775:-436.849,0.0,-451.747:148:49:305:157,148:5582,0,5633:.:1:1:.:.:.:-8.25206e-06
chr3	121186451	.	T	C	5368.790000000001	REJECT	NS=2;DP=365;DPB=418.0;AC=2;AN=4;AF=0.5;RO=223;AO=195;PRO=0.0;PAO=0.0;QR=8503;QA=7459;PQR=0.0;PQA=0.0;SRF=91;SRR=132;SAF=72;SAR=123;SRP=19.3791;SAP=31.9744;AB=0.466507;ABP=7.08311;RUN=1;RPP=4.89224;RPPR=5.20125;RPL=104.0;RPR=91.0;EPP=8.90111;EPPR=24.5205;DPRA=0.0;ODDS=326.84;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6865;Dels=0.0;FS=1.9355;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.5255;QD=16.525;ReadPosRankSum=-0.6375;SOR=0.8545;ClippingRankSum=-0.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:56:2093:50:1916:-143.739,0.0,-159.67:50:47:106:56,50:1745,0,1979:1:.:1:.:.:.:-0.000311562	0/1:129.501:312:167:6410:145:5543:-414.064,0.0,-492.067:145:46:312:167,145:5285,0,6238:.:1:1:.:.:.:-8.25206e-06
chr3	121202433	.	T	TA	480.53	REJECT	NS=2;DP=132;DPB=176.806;AC=2;AN=2;AF=0.0;RO=74;AO=9;PRO=38.8333;PAO=23.8333;QR=2791;QA=245;PQR=1390.0;PQA=779.0;SRF=1;SRR=73;SAF=0;SAR=9;SRP=155.131;SAP=22.5536;AB=0.0681818;ABP=216.802;RUN=1;RPP=5.18177;RPPR=3.12768;RPL=3.0;RPR=6.0;EPP=5.18177;EPPR=3.47981;DPRA=0.0;ODDS=23.6641;GTI=0;TYPE=ins;CIGAR=1M1I30M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986486;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:102.764:28:16:604:4:128:-16.1987,-9.36948,-72.7072:4:17:24:.:.:1:.:.:.:-0.000311562	./1:160.002:104:58:2187:5:117:-42.0254,-45.2526,-269.81:5:5:91:.:.:1:.:.:.:-8.25206e-06
chr3	121202433	.	TA	T	480.53	REJECT	NS=2;DP=132;DPB=176.806;AC=2;AN=4;AF=0.5;RO=74;AO=21;PRO=38.8333;PAO=30.3333;QR=2791;QA=628;PQR=1390.0;PQA=1030.0;SRF=1;SRR=73;SAF=0;SAR=21;SRP=155.131;SAP=48.6112;AB=0.159091;ABP=136.26;RUN=1;RPP=3.1137;RPPR=3.12768;RPL=10.0;RPR=11.0;EPP=3.1137;EPPR=3.47981;DPRA=0.0;ODDS=23.6641;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.4762;MQMR=60.0;PAIRED=0.952381;PAIREDR=0.986486;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:102.764:28:16:604:4:117:-16.1987,0.0,-62.5321:4:17:24:.:.:1:.:.:.:-0.000311562	0/1:160.002:104:58:2187:17:511:-42.0254,0.0,-236.333:17:19:91:.:.:1:.:.:.:-8.25206e-06
chr3	121202433	.	TAA	T	480.53	PASS	SOMATIC;NS=2;DP=132;DPB=176.806;AC=2;AN=2;AF=0.0;RO=74;AO=11;PRO=38.8333;PAO=17.0;QR=2791;QA=361;PQR=1390.0;PQA=595.0;SRF=1;SRR=73;SAF=2;SAR=9;SRP=155.131;SAP=12.6832;AB=0.105769;ABP=143.404;RUN=1;RPP=4.78696;RPPR=3.12768;RPL=7.0;RPR=4.0;EPP=4.78696;EPPR=3.47981;DPRA=0.0;ODDS=23.6641;GTI=0;TYPE=del;CIGAR=1M2D28M;NUMALT=3;MEANALT=11.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986486;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:102.764:28:16:604:0:0:-16.1987,-22.7131,-97.1349:0:0:24:.:.:1:.:.:.:-0.000311562	./1:160.002:104:58:2187:11:361:-42.0254,-33.9235,-274.268:11:12:91:.:.:1:.:.:.:-8.25206e-06
chr3	121208833	.	G	C	4366.28	REJECT	NS=2;DP=316;DPB=376.0;AC=2;AN=4;AF=0.5;RO=206;AO=170;PRO=0.0;PAO=0.0;QR=7911;QA=6502;PQR=0.0;PQA=0.0;SRF=98;SRR=108;SAF=77;SAR=93;SRP=4.06441;SAP=6.28028;AB=0.452128;ABP=10.4949;RUN=1;RPP=3.47014;RPPR=3.05246;RPL=88.0;RPR=82.0;EPP=10.3678;EPPR=3.05246;DPRA=0.0;ODDS=392.935;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995146;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0075;Dels=0.0;FS=2.9045;HaplotypeScore=4.8904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7245;QD=16.585;ReadPosRankSum=0.2015;SOR=0.718;ClippingRankSum=0.67	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:58:2254:60:2281:-173.304,0.0,-170.878:60:51:118:58,60:2119,0,2135:1:.:1:.:.:.:-0.000311562	0/1:129.501:257:148:5657:110:4221:-309.823,0.0,-438.969:110:43:257:147,110:4000,0,5492:.:1:1:.:.:.:-0.118477
chr3	121228960	.	G	A	6267.945	REJECT	NS=2;DP=377;DPB=434.0;AC=2;AN=4;AF=0.5;RO=201;AO=232;PRO=0.0;PAO=0.0;QR=7665;QA=8469;PQR=0.0;PQA=0.0;SRF=95;SRR=106;SAF=100;SAR=132;SRP=4.3175;SAP=12.5947;AB=0.534562;ABP=7.51335;RUN=1;RPP=3.16006;RPPR=3.10753;RPL=118.0;RPR=114.0;EPP=24.5753;EPPR=4.3175;DPRA=0.0;ODDS=346.704;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99569;PAIREDR=0.9801;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.6755;Dels=0.0;FS=2.5265;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.225;QD=17.98;ReadPosRankSum=0.7465;SOR=0.789;ClippingRankSum=1.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:56:2126:56:2029:-152.308,0.0,-161.012:56:50:112:56,56:1899,0,1880:1:.:1:.:.:.:-0.000311562	0/1:129.501:321:145:5539:176:6440:-492.384,0.0,-411.332:176:55:321:145,176:6210,0,5250:.:1:1:.:.:.:0.000172657
chr3	121238749	.	G	A	10767.15	REJECT	NS=2;DP=284;DPB=330.0;AC=4;AN=4;AF=1.0;RO=0;AO=329;PRO=0.0;PAO=0.0;QR=0;QA=12659;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=216;SAR=113;SRP=0.0;SAP=73.032;AB=0.0;ABP=0.0;RUN=1;RPP=7.82186;RPPR=0.0;RPL=151.0;RPR=178.0;EPP=11.0956;EPPR=0.0;DPRA=0.0;ODDS=61.113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99696;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.71;SOR=1.7645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:91:3478:-313.109,-24.666,0.0:91:100:91:0,91:3667,273,0:1:.:1:.:.:.:-0.000311562	1/1:129.501:239:0:0:238:9181:-825.899,-64.4825,0.0:238:100:238:0,238:10297,713,0:.:1:1:.:.:.:0.000172657
chr3	121252048	.	T	G	4303.09	REJECT	NS=2;DP=297;DPB=337.0;AC=2;AN=4;AF=0.5;RO=173;AO=164;PRO=0.0;PAO=0.0;QR=6561;QA=5990;PQR=0.0;PQA=0.0;SRF=40;SRR=133;SAF=38;SAR=126;SRP=111.571;SAP=105.546;AB=0.486647;ABP=3.53223;RUN=1;RPP=3.48696;RPPR=30.7374;RPL=85.0;RPR=79.0;EPP=9.41879;EPPR=4.52908;DPRA=0.0;ODDS=190.119;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988439;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.819;Dels=0.0;FS=2.0585;HaplotypeScore=18.4083;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.758;QD=15.335;ReadPosRankSum=0.5505;SOR=0.84;ClippingRankSum=0.3	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.909:79:46:1742:34:1201:-86.4631,0.0,-135.204:33:42:79:46,32:1029,0,1711:1:.:1:.:.:.:-0.000311562	0/1:118.909:257:127:4819:130:4789:-361.192,0.0,-363.955:130:51:257:127,130:4612,0,4646:.:1:1:.:.:.:0.000172657
chr3	121263720	.	C	A	14657.5	REJECT	NS=2;DP=385;DPB=436.0;AC=4;AN=4;AF=1.0;RO=0;AO=435;PRO=0.0;PAO=0.0;QR=0;QA=16675;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=169;SAR=266;SRP=0.0;SAP=49.979;AB=0.0;ABP=0.0;RUN=1;RPP=14.9958;RPPR=0.0;RPL=242.0;RPR=193.0;EPP=4.45296;EPPR=0.0;DPRA=0.0;ODDS=66.7532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995402;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=16.4766;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.4;SOR=1.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3871:-348.444,-27.1155,0.0:99:100:99:0,98:4199,295,0:1:.:1:.:.:.:-0.000311562	1/1:129.501:335:0:0:335:12804:-1151.6,-90.7063,0.0:334:100:334:0,334:14446,1005,0:.:1:1:.:.:.:0.000172657
chr3	128202523	.	CT	C	127.119	REJECT	NS=2;DP=430;DPB=435.667;AC=1;AN=4;AF=0.25;RO=411;AO=19;PRO=18.0;PAO=4.0;QR=15671;QA=695;PQR=555.5;PQA=51.5;SRF=164;SRR=247;SAF=11;SAR=8;SRP=39.4076;SAP=4.03889;AB=0.138614;ABP=117.582;RUN=1;RPP=3.12459;RPPR=6.86189;RPL=10.0;RPR=9.0;EPP=5.8675;EPPR=5.80521;DPRA=0.0;ODDS=29.2702;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997567;technology.ILLUMINA=1.0;END=128202524;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-0.137;FS=13.921;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.938;QD=2.01;ReadPosRankSum=-0.146;SOR=1.663;ClippingRankSum=0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.0235:103:87:3303:14:512:-17.6269,0.0,-281.292:14:14:105:93,21:250,0,3321:1:.:1:1:.:.:-0.000311562	0/0:144.922:329:324:12368:5:183:0.0,-75.3741,-1128.95:5:2:329:.:.:.:.:0:.:.:.:0.000172657
chr3	128205860	.	G	C	3424.11	REJECT	NS=2;DP=229;DPB=263.0;AC=2;AN=4;AF=0.5;RO=138;AO=124;PRO=0.0;PAO=0.0;QR=5311;QA=4811;PQR=0.0;PQA=0.0;SRF=21;SRR=117;SAF=21;SAR=103;SRP=148.027;SAP=120.76;AB=0.471483;ABP=4.86802;RUN=1;RPP=5.53201;RPPR=4.01736;RPL=68.0;RPR=56.0;EPP=11.486;EPPR=17.1721;DPRA=0.0;ODDS=192.618;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991935;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1085;Dels=0.0;FS=0.708;HaplotypeScore=7.8038;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1055;QD=16.83;ReadPosRankSum=-0.293;SOR=0.515;ClippingRankSum=0.994	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:65:36:1410:30:1171:-87.5553,0.0,-109.082:30:45:65:35,30:1076,0,1263:1:.:1:.:.:.:-0.000311562	0/1:129.501:196:102:3901:94:3640:-274.398,0.0,-297.831:93:48:195:102,93:3467,0,3752:.:1:1:.:.:.:0.000172657
chr3	134644636	.	G	T	1299.375	REJECT	NS=2;DP=284;DPB=321.0;AC=2;AN=4;AF=0.5;RO=254;AO=67;PRO=0.0;PAO=0.0;QR=9711;QA=2542;PQR=0.0;PQA=0.0;SRF=168;SRR=86;SAF=52;SAR=15;SRP=60.4945;SAP=47.3796;AB=0.208723;ABP=239.565;RUN=1;RPP=8.4876;RPPR=24.3831;RPL=27.0;RPR=40.0;EPP=3.82055;EPPR=7.14807;DPRA=0.0;ODDS=42.4421;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.955224;PAIREDR=0.996063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1435;Dels=0.0;FS=10.447;HaplotypeScore=5.8455;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.157;QD=10.17;ReadPosRankSum=0.559;SOR=1.4345;ClippingRankSum=-0.17	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9885:70:32:1171:41:1548:-119.638,0.0,-85.6558:38:55:70:31,36:1314,0,1051:1:.:1:.:.:.:-0.000311562	0/1:118.9885:247:222:8540:26:994:-22.24,0.0,-701.024:26:10:247:221,26:381,0,8781:.:1:1:.:.:.:0.000172657
chr3	134670524	.	C	T	2541.9300000000003	REJECT	NS=2;DP=400;DPB=457.0;AC=2;AN=4;AF=0.5;RO=341;AO=116;PRO=0.0;PAO=0.0;QR=13032;QA=4504;PQR=0.0;PQA=0.0;SRF=177;SRR=164;SAF=62;SAR=54;SRP=4.08648;SAP=4.20835;AB=0.253829;ABP=243.559;RUN=1;RPP=10.4981;RPPR=4.44309;RPL=48.0;RPR=68.0;EPP=7.80251;EPPR=11.728;DPRA=0.0;ODDS=171.007;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997067;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.222;Dels=0.0;FS=1.32;HaplotypeScore=3.915;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.661;QD=11.855;ReadPosRankSum=0.741;SOR=0.7465;ClippingRankSum=-0.888	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:47:1797:67:2628:-205.618,0.0,-130.83:66:58:113:47,66:2364,0,1630:1:.:1:.:.:.:-0.000311562	0/1:129.501:343:294:11235:49:1876:-76.2275,0.0,-917.614:49:14:343:294,49:1072,0,11551:.:1:1:.:.:.:0.000172657
chr3	134967368	.	G	A	7192.68	REJECT	NS=2;DP=269;DPB=317.0;AC=2;AN=4;AF=0.5;RO=80;AO=237;PRO=0.0;PAO=0.0;QR=3050;QA=9175;PQR=0.0;PQA=0.0;SRF=27;SRR=53;SAF=83;SAR=154;SRP=21.3592;SAP=49.1976;AB=0.747634;ABP=171.858;RUN=1;RPP=72.36;RPPR=13.8677;RPL=162.0;RPR=75.0;EPP=26.8415;EPPR=5.72464;DPRA=0.0;ODDS=30.7372;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.745;Dels=0.0;FS=2.3225;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.12;QD=21.065;ReadPosRankSum=-0.6515;SOR=0.5165;ClippingRankSum=0.588	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.995:94:58:2215:37:1428:-102.801,0.0,-173.636:36:39:94:57,36:1240,0,2048:1:.:1:.:.:.:-0.000311562	0/1:116.014:222:22:835:200:7747:-636.756,0.0,-14.9638:200:90:222:22,200:8018,0,257:.:1:1:.:.:.:0.000172657
chr3	137743508	.	A	T	5825.39	REJECT	NS=2;DP=378;DPB=441.0;AC=2;AN=4;AF=0.5;RO=237;AO=204;PRO=0.0;PAO=0.0;QR=9060;QA=7966;PQR=0.0;PQA=0.0;SRF=125;SRR=112;SAF=108;SAR=96;SRP=4.55873;SAP=4.5431;AB=0.462585;ABP=8.37251;RUN=1;RPP=12.5903;RPPR=3.23936;RPL=87.0;RPR=117.0;EPP=43.9277;EPPR=54.5484;DPRA=0.0;ODDS=311.804;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995098;PAIREDR=0.995781;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.6695;Dels=0.0;FS=3.787;HaplotypeScore=2.9984;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0595;QD=15.585;ReadPosRankSum=-0.292;SOR=0.78;ClippingRankSum=0.066	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.7135:123:75:2859:49:1895:-136.939,0.0,-223.694:48:39:123:74,48:1595,0,2472:1:.:1:.:.:.:-0.000311562	0/1:126.7135:316:162:6201:155:6071:-460.169,0.0,-471.869:154:49:316:162,154:5821,0,5987:.:1:1:.:.:.:0.000172657
chr3	137749839	.	A	G	4209.620000000001	REJECT	NS=2;DP=286;DPB=325.0;AC=2;AN=4;AF=0.5;RO=169;AO=155;PRO=0.0;PAO=0.0;QR=6394;QA=5866;PQR=0.0;PQA=0.0;SRF=116;SRR=53;SAF=115;SAR=40;SRP=54.0078;SAP=81.8137;AB=0.476923;ABP=4.51363;RUN=1;RPP=39.449;RPPR=6.72365;RPL=52.0;RPR=103.0;EPP=3.69677;EPPR=3.6399;DPRA=0.0;ODDS=241.35;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993548;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1035;Dels=0.0;FS=2.478;HaplotypeScore=9.7651;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.715;QD=16.46;ReadPosRankSum=-0.4465;SOR=0.9295;ClippingRankSum=-1.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:39:1449:39:1454:-109.796,0.0,-109.343:38:50:76:37,38:1223,0,1277:1:.:1:.:.:.:-0.000311562	0/1:129.501:247:130:4945:116:4412:-330.254,0.0,-378.22:116:47:246:130,116:4225,0,4795:.:1:1:.:.:.:0.000172657
chr3	137750056	.	T	C	5862.405000000001	REJECT	NS=2;DP=375;DPB=424.0;AC=2;AN=4;AF=0.5;RO=214;AO=210;PRO=0.0;PAO=0.0;QR=8205;QA=8092;PQR=0.0;PQA=0.0;SRF=112;SRR=102;SAF=106;SAR=104;SRP=4.02501;SAP=3.05166;AB=0.495283;ABP=3.09224;RUN=1;RPP=3.38255;RPPR=4.02501;RPL=108.0;RPR=102.0;EPP=3.05166;EPPR=4.99913;DPRA=0.0;ODDS=258.187;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995238;PAIREDR=0.995327;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.767;Dels=0.0;FS=0.389;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3095;QD=19.505;ReadPosRankSum=0.69;SOR=0.734;ClippingRankSum=-0.13	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4525:95:41:1544:56:2148:-167.071,0.0,-112.7:55:58:95:39,55:2092,0,1305:1:.:1:.:.:.:-0.000311562	0/1:117.4525:327:173:6661:154:5944:-446.059,0.0,-510.528:154:47:327:173,154:5683,0,6469:.:1:1:.:.:.:0.000172657
chr3	137750586	.	C	A	5981.46	REJECT	NS=2;DP=383;DPB=443.0;AC=2;AN=4;AF=0.5;RO=225;AO=218;PRO=0.0;PAO=0.0;QR=8665;QA=8361;PQR=0.0;PQA=0.0;SRF=108;SRR=117;SAF=115;SAR=103;SRP=3.79203;SAP=4.44467;AB=0.492099;ABP=3.25049;RUN=1;RPP=18.9477;RPPR=13.5202;RPL=129.0;RPR=89.0;EPP=7.83137;EPPR=3.01995;DPRA=0.0;ODDS=379.068;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995413;PAIREDR=0.991111;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7325;Dels=0.0;FS=7.466;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0785;QD=18.29;ReadPosRankSum=0.529;SOR=0.9685;ClippingRankSum=-0.21	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:56:2192:61:2322:-177.269,0.0,-165.564:60:52:115:54,59:2184,0,1918:1:.:1:.:.:.:-0.000311562	0/1:129.501:325:169:6473:157:6039:-454.87,0.0,-493.91:156:48:325:168,156:5753,0,6245:.:1:1:.:.:.:0.000172657
chr3	137750672	.	G	A	5738.09	REJECT	NS=2;DP=361;DPB=423.0;AC=2;AN=4;AF=0.5;RO=207;AO=215;PRO=0.0;PAO=0.0;QR=7588;QA=8069;PQR=0.0;PQA=0.0;SRF=79;SRR=128;SAF=81;SAR=134;SRP=28.1973;SAP=31.3808;AB=0.508274;ABP=3.26184;RUN=1;RPP=18.3722;RPPR=6.04197;RPL=127.0;RPR=88.0;EPP=3.2628;EPPR=4.78314;DPRA=0.0;ODDS=384.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0483;PAIRED=0.986047;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.084;Dels=0.0;FS=0.2175;HaplotypeScore=9.7643;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=0.3885;QD=18.295;ReadPosRankSum=0.2325;SOR=0.6945;ClippingRankSum=0.66	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:61:2240:63:2390:-181.919,0.0,-168.0:63:51:123:60,63:2283,0,2088:1:.:1:.:.:.:-0.000311562	0/1:129.501:299:146:5348:152:5679:-430.232,0.0,-400.784:152:51:298:146,152:5488,0,5019:.:1:1:.:.:.:0.000172657
chr3	137750882	.	C	G	5180.120000000001	REJECT	NS=2;DP=343;DPB=389.0;AC=2;AN=4;AF=0.5;RO=202;AO=187;PRO=0.0;PAO=0.0;QR=7685;QA=7164;PQR=0.0;PQA=0.0;SRF=76;SRR=126;SAF=77;SAR=110;SRP=29.885;SAP=15.6559;AB=0.48072;ABP=4.26629;RUN=1;RPP=7.20229;RPPR=15.4371;RPL=84.0;RPR=103.0;EPP=8.13126;EPPR=6.49326;DPRA=0.0;ODDS=277.041;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989305;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.879;Dels=0.0;FS=1.86;HaplotypeScore=9.7315;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3835;QD=17.22;ReadPosRankSum=0.484;SOR=0.5315;ClippingRankSum=0.374	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:42:1617:49:1823:-139.451,0.0,-120.914:48:53:90:42,47:1597,0,1511:1:.:1:.:.:.:-0.000311562	0/1:129.501:297:160:6068:138:5341:-399.693,0.0,-465.105:138:46:297:159,138:5079,0,5847:.:1:1:.:.:.:0.000172657
chr3	137751000	.	G	A	1227.27	PASS	SOMATIC;NS=2;DP=177;DPB=177.0;AC=1;AN=3;AF=0.25;RO=128;AO=49;PRO=0.0;PAO=0.0;QR=4924;QA=1887;PQR=0.0;PQA=0.0;SRF=17;SRR=111;SAF=9;SAR=40;SRP=152.91;SAP=45.5977;AB=0.352518;ABP=29.2711;RUN=1;RPP=4.11819;RPPR=8.50684;RPL=27.0;RPR=22.0;EPP=4.11819;EPPR=3.0103;DPRA=3.65789;ODDS=24.7279;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979592;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.816;Dels=0.0;FS=4.97;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.168;QD=11.88;ReadPosRankSum=-0.481;SOR=0.307	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:107.386:38:38:1453:0:0:0.0,-10.3132,-131.02:0:0:38:38,0:.:0.0:0:.:.:.:0:.:.:0:-1.37797	0/1:129.501:138:90:3471:49:1887:-132.148,0.0,-274.657:48:35:138:89,48:38.0:0.35:2:1667,0,3449:.:1:1:.:.:1:-0.0222186
chr3	137751020	.	G	C	1769.38	REJECT	NS=2;DP=139;DPB=157.0;AC=2;AN=4;AF=0.5;RO=87;AO=70;PRO=0.0;PAO=0.0;QR=3370;QA=2687;PQR=0.0;PQA=0.0;SRF=9;SRR=78;SAF=7;SAR=63;SRP=121.842;SAP=100.292;AB=0.44586;ABP=7.00747;RUN=1;RPP=15.4187;RPPR=3.03526;RPL=45.0;RPR=25.0;EPP=6.1124;EPPR=6.03039;DPRA=0.0;ODDS=96.3426;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8545;Dels=0.0;FS=0.0;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.303;QD=17.245;ReadPosRankSum=-0.571;SOR=0.629;ClippingRankSum=0.812	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:36:16:615:20:775:-60.1196,0.0,-45.6873:20:56:36:16,20:757,0,583:1:.:1:.:.:.:-1.37797	0/1:129.501:121:71:2755:50:1912:-139.265,0.0,-215.159:50:41:121:71,50:1752,0,2736:.:1:1:.:.:.:-0.0222186
chr3	137751136	.	C	A	2314.2650000000003	REJECT	NS=2;DP=86;DPB=105.0;AC=2;AN=4;AF=0.5;RO=27;AO=78;PRO=0.0;PAO=0.0;QR=1027;QA=2994;PQR=0.0;PQA=0.0;SRF=16;SRR=11;SAF=39;SAR=39;SRP=5.02092;SAP=3.0103;AB=0.742857;ABP=56.8008;RUN=1;RPP=3.0103;RPPR=3.09072;RPL=39.0;RPR=39.0;EPP=43.2104;EPPR=12.7417;DPRA=0.0;ODDS=28.0751;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987179;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0805;Dels=0.0;FS=3.9625;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.978;QD=25.885;ReadPosRankSum=-0.5465;SOR=0.2885;ClippingRankSum=-0.142	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:36:18:687:18:691:-52.5481,0.0,-52.184:18:50:36:18,18:668,0,664:1:.:1:.:.:.:-1.37797	0/1:110.428:68:9:340:60:2303:-188.703,0.0,-11.9041:59:87:68:9,59:2340,0,178:.:1:1:.:.:.:-0.0222186
chr3	137751330	.	T	TA	1381.38	REJECT	NS=2;DP=247;DPB=331.952;AC=2;AN=4;AF=0.5;RO=101;AO=71;PRO=42.25;PAO=34.75;QR=3644;QA=2604;PQR=1495.17;PQA=1225.67;SRF=73;SRR=28;SAF=49;SAR=22;SRP=46.5472;SAP=25.3061;AB=0.275194;ABP=116.264;RUN=1;RPP=6.71098;RPPR=4.75178;RPL=41.0;RPR=30.0;EPP=4.50892;EPPR=10.7717;DPRA=0.0;ODDS=131.289;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.970297;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.2535;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=0.642;QD=4.905;RPA=14,15;RU=A;ReadPosRankSum=0.399;SOR=0.5655;STR;ClippingRankSum=-1.176	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:62:21:754:25:927:-70.4618,0.0,-61.5577:26:47:56:31,28:445,0,509:1:.:1:.:.:.:-1.37797	0/1:129.501:215:80:2890:46:1677:-121.586,0.0,-243.11:65:36:178:113,84:961,0,1793:.:1:1:.:.:.:-0.0222186
chr3	137751330	.	T	TAA	1839.03	REJECT	NS=2;DP=258;DPB=331.952;AC=2;AN=2;AF=0.0;RO=101;AO=20;PRO=42.25;PAO=34.75;QR=3644;QA=692;PQR=1495.17;PQA=1225.67;SRF=73;SRR=28;SAF=15;SAR=5;SRP=46.5472;SAP=13.8677;AB=0.0775194;ABP=402.999;RUN=1;RPP=13.8677;RPPR=4.75178;RPL=5.0;RPR=15.0;EPP=4.74748;EPPR=10.7717;DPRA=0.0;ODDS=131.289;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=3;MEANALT=17.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.970297;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:65:21:754:3:68:-70.4618,-71.386,-138.93:3:6:53:.:.:1:.:.:.:-1.37797	./1:160.002:193:80:2890:17:624:-121.586,-86.8775,-337.834:17:11:160:.:.:1:.:.:.:-0.0222186
chr3	137751330	.	TA	T	1839.03	REJECT	NS=2;DP=258;DPB=331.952;AC=2;AN=2;AF=0.0;RO=101;AO=21;PRO=42.25;PAO=33.25;QR=3644;QA=772;PQR=1495.17;PQA=1159.5;SRF=73;SRR=28;SAF=16;SAR=5;SRP=46.5472;SAP=15.5221;AB=0.0813953;ABP=395.693;RUN=1;RPP=8.07707;RPPR=4.75178;RPL=14.0;RPR=7.0;EPP=5.59539;EPPR=10.7717;DPRA=0.0;ODDS=131.289;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=17.5;LEN=1;MQM=59.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=0.970297;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:65:21:754:4:144:-70.4618,-64.8171,-132.071:4:8:53:.:.:1:.:.:.:-1.37797	./1:160.002:193:80:2890:17:628:-121.586,-94.1833,-457.918:17:11:160:.:.:1:.:.:.:-0.0222186
chr3	137751420	.	A	G	8295.62	REJECT	NS=2;DP=305;DPB=350.0;AC=2;AN=4;AF=0.5;RO=76;AO=274;PRO=0.0;PAO=0.0;QR=2932;QA=10400;PQR=0.0;PQA=0.0;SRF=38;SRR=38;SAF=124;SAR=150;SRP=3.0103;SAP=8.36766;AB=0.782857;ABP=246.24;RUN=1;RPP=44.0939;RPPR=4.03889;RPL=173.0;RPR=101.0;EPP=6.18033;EPPR=12.2676;DPRA=0.0;ODDS=105.213;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9854;MQMR=60.0;PAIRED=0.981752;PAIREDR=0.973684;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5445;Dels=0.0;FS=2.8925;HaplotypeScore=7.8063;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.131;QD=25.11;ReadPosRankSum=-0.253;SOR=0.7255;ClippingRankSum=-0.232	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.067:84:42:1620:44:1661:-126.219,0.0,-122.552:42:50:84:41,41:1379,0,1417:1:.:1:.:.:.:-0.0110752	0/1:120.067:262:34:1312:230:8739:-714.589,0.0,-46.5261:229:87:262:33,228:8890,0,659:.:1:1:.:.:.:-0.0222186
chr3	137752004	.	C	G	2687.99	PASS	SOMATIC;NS=2;DP=458;DPB=458.0;AC=1;AN=3;AF=0.25;RO=352;AO=106;PRO=0.0;PAO=0.0;QR=13617;QA=4063;PQR=0.0;PQA=0.0;SRF=181;SRR=171;SAF=47;SAR=59;SRP=3.6272;SAP=5.96022;AB=0.315476;ABP=102.381;RUN=1;RPP=4.32138;RPPR=5.00904;RPL=49.0;RPR=57.0;EPP=3.09224;EPPR=22.3561;DPRA=2.7541;ODDS=77.1178;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=0.988636;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.136;Dels=0.0;FS=3.903;HaplotypeScore=4.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.166;QD=10.46;ReadPosRankSum=1.312;SOR=0.934	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:118:122:4724:0:0:0.0,-33.0659,-425.131:0:0:118:115,0:.:0.0:0:.:.:.:0:.:.:0:-0.0110752	0/1:129.501:335:230:8893:106:4063:-274.441,0.0,-708.841:106:32:335:220,104:38.0:0.326:2:3534,0,8891:.:1:1:.:.:1:-0.0222186
chr3	142070013	.	A	G	6197.6	REJECT	NS=2;DP=380;DPB=447.0;AC=2;AN=4;AF=0.5;RO=217;AO=228;PRO=0.0;PAO=0.0;QR=8180;QA=8696;PQR=0.0;PQA=0.0;SRF=140;SRR=77;SAF=155;SAR=73;SRP=42.7272;SAP=67.0497;AB=0.510067;ABP=3.40379;RUN=1;RPP=37.2967;RPPR=23.274;RPL=84.0;RPR=144.0;EPP=19.8106;EPPR=62.3405;DPRA=0.0;ODDS=412.685;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9263;PAIRED=0.986842;PAIREDR=0.976959;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9155;Dels=0.0;FS=6.399;HaplotypeScore=6.863;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.216;QD=17.745;ReadPosRankSum=1.869;SOR=0.767;ClippingRankSum=-0.342	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8725:127:65:2444:64:2415:-182.384,0.0,-185.011:63:50:127:63,63:2143,0,2160:1:.:1:.:.:.:-6.43493e-05	0/1:118.8725:316:152:5736:164:6281:-479.348,0.0,-430.388:163:52:314:150,162:5984,0,5428:.:1:1:.:.:.:-5.44248e-05
chr3	142071932	.	A	G	5648.56	REJECT	NS=2;DP=372;DPB=431.0;AC=2;AN=4;AF=0.5;RO=221;AO=209;PRO=0.0;PAO=0.0;QR=8421;QA=7957;PQR=0.0;PQA=0.0;SRF=97;SRR=124;SAF=96;SAR=113;SRP=10.1732;SAP=6.01296;AB=0.484919;ABP=3.86176;RUN=1;RPP=4.76618;RPPR=3.80618;RPL=98.0;RPR=111.0;EPP=27.9563;EPPR=64.3323;DPRA=0.0;ODDS=378.814;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=0.995475;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1475;Dels=0.0;FS=2.561;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.174;QD=17.22;ReadPosRankSum=0.0995;SOR=0.55;ClippingRankSum=-0.98	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:57:2214:59:2259:-171.87,0.0,-167.824:59:51:114:54,59:1990,0,1886:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:313:164:6207:150:5698:-427.522,0.0,-473.262:150:48:313:163,150:5422,0,5891:.:1:1:.:.:.:-5.44248e-05
chr3	142076059	.	A	G	6082.25	REJECT	NS=2;DP=363;DPB=422.0;AC=2;AN=4;AF=0.5;RO=207;AO=215;PRO=0.0;PAO=0.0;QR=7905;QA=8262;PQR=0.0;PQA=0.0;SRF=88;SRR=119;SAF=95;SAR=120;SRP=13.0914;SAP=9.32272;AB=0.509479;ABP=3.33962;RUN=1;RPP=4.71718;RPPR=20.6443;RPL=114.0;RPR=101.0;EPP=4.71718;EPPR=3.52432;DPRA=0.0;ODDS=358.345;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986047;PAIREDR=0.995169;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.555;Dels=0.0;FS=3.862;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8715;QD=17.885;ReadPosRankSum=0.6815;SOR=0.8215;ClippingRankSum=-0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:114:60:2297:55:2088:-156.75,0.0,-175.581:55:48:114:59,55:1900,0,2003:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:306:147:5608:160:6174:-472.188,0.0,-421.255:159:52:306:146,159:5974,0,5280:.:1:1:.:.:.:-5.44248e-05
chr3	142078215	.	G	A	5243.615	REJECT	NS=2;DP=376;DPB=433.0;AC=2;AN=4;AF=0.5;RO=243;AO=190;PRO=0.0;PAO=0.0;QR=9180;QA=7276;PQR=0.0;PQA=0.0;SRF=106;SRR=137;SAF=80;SAR=110;SRP=11.5979;SAP=13.2962;AB=0.438799;ABP=17.0973;RUN=1;RPP=3.19316;RPPR=3.73412;RPL=97.0;RPR=93.0;EPP=14.7134;EPPR=13.957;DPRA=0.0;ODDS=287.491;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994737;PAIREDR=0.995885;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.154;Dels=0.0;FS=2.849;HaplotypeScore=7.7895;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.201;QD=14.83;ReadPosRankSum=-0.246;SOR=0.8995;ClippingRankSum=0.553	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:65:2426:46:1738:-126.379,0.0,-188.273:45:40:110:65,44:1491,0,2285:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:321:178:6754:144:5538:-410.896,0.0,-520.314:143:45:321:177,143:5225,0,6549:.:1:1:.:.:.:-5.44248e-05
chr3	142168331	.	C	T	9338.885	REJECT	NS=2;DP=377;DPB=432.0;AC=3;AN=4;AF=0.75;RO=108;AO=324;PRO=0.0;PAO=0.0;QR=4188;QA=12543;PQR=0.0;PQA=0.0;SRF=67;SRR=41;SAF=181;SAR=143;SRP=16.6021;SAP=12.6881;AB=0.664596;ABP=78.7825;RUN=1;RPP=7.5409;RPPR=3.0103;RPL=175.0;RPR=149.0;EPP=21.1327;EPPR=9.52472;DPRA=0.0;ODDS=69.595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.13;Dels=0.0;FS=1.989;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.694;QD=27.155;ReadPosRankSum=1.667;SOR=0.682	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:110:4197:-377.732,-29.7988,0.0:108:100:108:0,106:4503,319,0:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:322:108:4188:214:8346:-663.438,0.0,-289.437:214:66:322:108,214:8386,0,3701:.:1:1:.:.:.:-5.44248e-05
chr3	142178144	.	C	T	5272.645	REJECT	NS=2;DP=336;DPB=384.0;AC=2;AN=4;AF=0.5;RO=187;AO=197;PRO=0.0;PAO=0.0;QR=7112;QA=7448;PQR=0.0;PQA=0.0;SRF=93;SRR=94;SAF=95;SAR=102;SRP=3.02191;SAP=3.55041;AB=0.513021;ABP=3.57579;RUN=1;RPP=3.90314;RPPR=4.97275;RPL=94.0;RPR=103.0;EPP=6.9895;EPPR=7.20229;DPRA=0.0;ODDS=221.701;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984772;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.7375;Dels=0.0;FS=2.0095;HaplotypeScore=3.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.73;QD=18.325;ReadPosRankSum=0.675;SOR=0.73;ClippingRankSum=-0.404	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9995:92:36:1363:58:2193:-171.954,0.0,-97.2184:57:62:92:35,56:1844,0,1188:1:.:1:.:.:.:-6.43493e-05	0/1:117.9995:289:151:5749:139:5255:-394.176,0.0,-438.578:138:48:289:151,138:4978,0,5552:.:1:1:.:.:.:-5.44248e-05
chr3	142188337	.	A	C	5625.99	REJECT	NS=2;DP=363;DPB=414.0;AC=2;AN=4;AF=0.5;RO=215;AO=199;PRO=0.0;PAO=0.0;QR=8311;QA=7586;PQR=0.0;PQA=0.0;SRF=70;SRR=145;SAF=85;SAR=114;SRP=59.8221;SAP=12.1872;AB=0.480676;ABP=4.35305;RUN=1;RPP=3.2831;RPPR=7.46434;RPL=102.0;RPR=97.0;EPP=9.83025;EPPR=4.71718;DPRA=0.0;ODDS=271.751;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990698;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.112;Dels=0.0;FS=7.434;HaplotypeScore=2.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.153;QD=15.615;ReadPosRankSum=1.6095;SOR=0.3885;ClippingRankSum=0.45	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6695:100:58:2254:44:1626:-118.708,0.0,-175.26:43:42:100:57,42:1324,0,2070:1:.:1:.:.:.:-6.43493e-05	0/1:117.6695:312:157:6057:155:5960:-451.56,0.0,-460.296:155:50:312:157,155:5729,0,5855:.:1:1:.:.:.:-5.44248e-05
chr3	142215171	.	T	C	2035.17	REJECT	NS=2;DP=105;DPB=105.0;AC=2;AN=4;AF=0.5;RO=23;AO=82;PRO=0.0;PAO=0.0;QR=849;QA=2797;PQR=0.0;PQA=0.0;SRF=6;SRR=17;SAF=48;SAR=34;SRP=14.4341;SAP=8.20065;AB=0.780952;ABP=74.9998;RUN=1;RPP=125.46;RPPR=30.2953;RPL=7.0;RPR=75.0;EPP=3.434;EPPR=18.9659;DPRA=0.0;ODDS=19.8874;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9565;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.867;Dels=0.0;FS=15.195;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0.511;QD=25.91;ReadPosRankSum=-1.339;SOR=0.813	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:86.3696:20:5:170:15:491:-38.9695,0.0,-9.95524:15:75:20:.:.:.:.:1:.:.:.:-6.43493e-05	0/1:126.98:85:18:679:67:2306:-184.623,0.0,-38.159:67:79:85:18,67:2231,0,515:.:1:1:.:.:.:-5.44248e-05
chr3	142215178	.	A	C	2800.81	REJECT	NS=2;DP=152;DPB=152.0;AC=2;AN=4;AF=0.5;RO=49;AO=102;PRO=0.0;PAO=0.0;QR=1739;QA=3746;PQR=0.0;PQA=0.0;SRF=28;SRR=21;SAF=60;SAR=42;SRP=5.18177;SAP=9.90792;AB=0.671053;ABP=41.6397;RUN=1;RPP=95.7449;RPPR=92.7497;RPL=18.0;RPR=84.0;EPP=3.7767;EPPR=5.18177;DPRA=0.0;ODDS=61.1684;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9796;PAIRED=0.990196;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.328;Dels=0.0;FS=3.774;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.185;QD=25.12;ReadPosRankSum=2.252;SOR=0.994	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:138.855:36:14:454:21:745:-57.7285,0.0,-31.4689:21:60:35:.:.:.:.:1:.:.:.:-6.43493e-05	0/1:118.9275:115:35:1285:81:3001:-238.672,0.0,-84.27:80:70:115:35,80:2917,0,1104:.:1:1:.:.:.:-5.44248e-05
chr3	142217537	.	A	G	1655.31	REJECT	NS=2;DP=383;DPB=437.0;AC=2;AN=4;AF=0.5;RO=352;AO=84;PRO=0.0;PAO=0.0;QR=13595;QA=3214;PQR=0.0;PQA=0.0;SRF=181;SRR=171;SAF=43;SAR=41;SRP=3.6272;SAP=3.1137;AB=0.19222;ABP=362.575;RUN=1;RPP=3.0103;RPPR=3.03498;RPL=42.0;RPR=42.0;EPP=3.94093;EPPR=3.89863;DPRA=0.0;ODDS=62.8734;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997159;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.138;Dels=0.0;FS=1.118;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.199;QD=9.08;ReadPosRankSum=0.312;SOR=0.6475;ClippingRankSum=-0.427	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.46:107:57:2145:50:1911:-143.034,0.0,-164.058:50:47:106:56,50:1829,0,2054:1:.:1:.:.:.:-6.43493e-05	0/1:119.46:329:295:11450:34:1303:-28.0839,0.0,-940.713:34:10:329:295,34:467,0,11818:.:1:1:.:.:.:-5.44248e-05
chr3	142241692	.	G	GA	113.19	REJECT	NS=2;DP=170;DPB=205.952;AC=2;AN=3;AF=0.25;RO=121;AO=16;PRO=33.1667;PAO=15.1667;QR=4465;QA=528;PQR=1161.75;PQA=516.75;SRF=23;SRR=98;SAF=1;SAR=15;SRP=103.957;SAP=29.6108;AB=0.0941176;ABP=246.266;RUN=1;RPP=7.89611;RPPR=65.4805;RPL=11.0;RPR=5.0;EPP=11.6962;EPPR=10.9245;DPRA=0.0;ODDS=9.84943;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40.7046:40:25:916:5:149:-6.63497,0.0,-93.7072:5:14:37:.:.:1:.:.:.:-6.43493e-05	./1:75.7987:130:96:3549:11:379:-14.6382,-8.90226,-340.045:11:9:121:.:.:1:.:.:.:-5.44248e-05
chr3	142241692	.	G	GAA	113.19	REJECT	NS=2;DP=170;DPB=205.952;AC=2;AN=2;AF=0.0;RO=121;AO=2;PRO=33.1667;PAO=12.1667;QR=4465;QA=30;PQR=1161.75;PQA=422.75;SRF=23;SRR=98;SAF=1;SAR=1;SRP=103.957;SAP=3.0103;AB=0.05;ABP=73.366;RUN=1;RPP=7.35324;RPPR=65.4805;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=10.9245;DPRA=0.0;ODDS=9.84943;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=3;MEANALT=6.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7046:40:25:916:2:30:-6.63497,-13.1558,-107.961:2:5:37:.:.:1:.:.:.:-6.43493e-05	./1:75.7987:130:96:3549:0:0:-14.6382,-44.4378,-379.084:0:0:121:.:.:1:.:.:.:-5.44248e-05
chr3	142241692	.	GA	G	113.19	REJECT	NS=2;DP=170;DPB=205.952;AC=2;AN=3;AF=0.25;RO=121;AO=19;PRO=33.1667;PAO=15.5;QR=4465;QA=594;PQR=1161.75;PQA=509.75;SRF=23;SRR=98;SAF=2;SAR=17;SRP=103.957;SAP=28.7251;AB=0.111765;ABP=225.573;RUN=1;RPP=22.325;RPPR=65.4805;RPL=16.0;RPR=3.0;EPP=12.2676;EPPR=10.9245;DPRA=0.0;ODDS=9.84943;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7046:40:25:916:5:140:-6.63497,-4.05685,-98.0425:5:14:37:.:.:1:.:.:.:-6.43493e-05	0/1:75.7987:130:96:3549:14:454:-14.6382,0.0,-348.431:14:12:121:.:.:1:.:.:.:-5.44248e-05
chr3	142277575	.	A	T	5189.885	REJECT	NS=2;DP=357;DPB=410.0;AC=2;AN=4;AF=0.5;RO=216;AO=194;PRO=0.0;PAO=0.0;QR=8486;QA=7404;PQR=0.0;PQA=0.0;SRF=91;SRR=125;SAF=72;SAR=122;SRP=14.6317;SAP=30.9932;AB=0.473171;ABP=5.5737;RUN=1;RPP=5.87575;RPPR=7.87601;RPL=89.0;RPR=105.0;EPP=17.5166;EPPR=10.8919;DPRA=0.0;ODDS=318.26;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994845;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2385;Dels=0.0;FS=2.3205;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.374;QD=17.185;ReadPosRankSum=0.3075;SOR=0.9365;ClippingRankSum=-1.494	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:48:1862:57:2158:-165.764,0.0,-139.157:55:53:103:47,54:1884,0,1713:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:305:168:6624:137:5246:-389.217,0.0,-513.155:137:45:305:168,137:4964,0,6513:.:1:1:.:.:.:-5.44248e-05
chr3	142281612	.	A	G	5691.91	REJECT	NS=2;DP=375;DPB=430.0;AC=2;AN=4;AF=0.5;RO=227;AO=203;PRO=0.0;PAO=0.0;QR=8727;QA=7722;PQR=0.0;PQA=0.0;SRF=124;SRR=103;SAF=95;SAR=108;SRP=7.22889;SAP=4.81808;AB=0.472093;ABP=5.91906;RUN=1;RPP=6.10171;RPPR=5.77486;RPL=110.0;RPR=93.0;EPP=3.53445;EPPR=3.09639;DPRA=0.0;ODDS=292.414;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985222;PAIREDR=0.991189;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7;Dels=0.0;FS=4.9845;HaplotypeScore=8.7566;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.325;QD=16.2;ReadPosRankSum=-0.421;SOR=0.704;ClippingRankSum=-1.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3855:107:62:2378:46:1738:-127.164,0.0,-184.781:46:43:107:61,46:1615,0,2219:1:.:1:.:.:.:-6.43493e-05	0/1:118.3855:321:165:6349:157:5984:-451.039,0.0,-483.841:156:48:321:165,155:5696,0,6123:.:1:1:.:.:.:-5.44248e-05
chr3	142503605	.	G	A	10274.0	REJECT	NS=2;DP=376;DPB=425.0;AC=2;AN=4;AF=0.5;RO=94;AO=331;PRO=0.0;PAO=0.0;QR=3544;QA=12808;PQR=0.0;PQA=0.0;SRF=51;SRR=43;SAF=184;SAR=147;SRP=4.48875;SAP=11.9914;AB=0.778824;ABP=289.997;RUN=1;RPP=7.11051;RPPR=3.37991;RPL=178.0;RPR=153.0;EPP=25.8468;EPPR=14.1911;DPRA=0.0;ODDS=121.704;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996979;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.737;Dels=0.0;FS=1.885;HaplotypeScore=6.9654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.016;QD=25.295;ReadPosRankSum=-0.2125;SOR=0.5865;ClippingRankSum=-0.808	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:51:1956:47:1823:-137.531,0.0,-149.501:46:48:96:49,46:1557,0,1683:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:327:43:1588:284:10985:-899.841,0.0,-54.259:284:87:327:43,284:11365,0,790:.:1:1:.:.:.:-5.44248e-05
chr3	147016796	.	G	A	11722.0	REJECT	NS=2;DP=308;DPB=356.0;AC=4;AN=4;AF=1.0;RO=0;AO=356;PRO=0.0;PAO=0.0;QR=0;QA=13690;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=141;SAR=215;SRP=0.0;SAP=36.4119;AB=0.0;ABP=0.0;RUN=1;RPP=9.25633;RPPR=0.0;RPL=194.0;RPR=162.0;EPP=8.49998;EPPR=0.0;DPRA=0.0;ODDS=64.2138;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997191;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8657;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.755;SOR=1.293	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:96:3647:-328.294,-26.0126,0.0:94:100:94:0,92:3754,276,0:1:.:1:.:.:.:-6.43493e-05	1/1:129.501:259:0:0:260:10043:-903.373,-70.4332,0.0:259:100:259:0,259:11242,777,0:.:1:1:.:.:.:-5.44248e-05
chr3	150013987	.	C	T	4977.69	REJECT	NS=2;DP=349;DPB=396.0;AC=2;AN=4;AF=0.5;RO=214;AO=182;PRO=0.0;PAO=0.0;QR=8055;QA=6795;PQR=0.0;PQA=0.0;SRF=93;SRR=121;SAF=96;SAR=86;SRP=10.9656;SAP=4.20342;AB=0.459596;ABP=8.62542;RUN=1;RPP=4.72839;RPPR=13.4009;RPL=97.0;RPR=85.0;EPP=3.77389;EPPR=3.05089;DPRA=0.0;ODDS=212.251;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995327;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1465;Dels=0.0;FS=5.8285;HaplotypeScore=6.8235;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0005;QD=14.72;ReadPosRankSum=-0.134;SOR=0.619;ClippingRankSum=-0.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:59:2213:34:1305:-92.2761,0.0,-174.028:33:36:92:58,33:1139,0,2055:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:303:155:5842:148:5490:-411.846,0.0,-443.83:148:49:303:155,148:5249,0,5603:.:1:1:.:.:.:-5.44248e-05
chr3	151500916	.	C	A	8962.619999999999	REJECT	NS=2;DP=383;DPB=440.0;AC=3;AN=4;AF=0.75;RO=122;AO=317;PRO=0.0;PAO=0.0;QR=4682;QA=12197;PQR=0.0;PQA=0.0;SRF=55;SRR=67;SAF=166;SAR=151;SRP=5.57335;SAP=4.55157;AB=0.632836;ABP=54.3543;RUN=1;RPP=3.18155;RPPR=11.625;RPL=156.0;RPR=161.0;EPP=84.396;EPPR=31.4886;DPRA=0.0;ODDS=66.5094;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9274;MQMR=60.0;PAIRED=0.977918;PAIREDR=0.967213;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.197;Dels=0.0;FS=4.8555;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.75;MQ=59.97;MQRankSum=-0.14;QD=28.685;ReadPosRankSum=-0.934;SOR=0.682	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.591:103:0:0:105:4025:-362.283,-28.4587,0.0:103:100:103:0,101:3993,303,0:1:.:1:.:.:.:-6.43493e-05	0/1:120.591:331:122:4682:212:8172:-644.536,0.0,-330.655:210:63:330:118,208:8029,0,4124:.:1:1:.:.:.:-5.44248e-05
chr3	151899661	.	T	C	4867.165000000001	REJECT	NS=2;DP=317;DPB=363.0;AC=2;AN=4;AF=0.5;RO=183;AO=180;PRO=0.0;PAO=0.0;QR=7023;QA=6904;PQR=0.0;PQA=0.0;SRF=109;SRR=74;SAF=107;SAR=73;SRP=17.5461;SAP=16.956;AB=0.495868;ABP=3.06414;RUN=1;RPP=26.3657;RPPR=33.8737;RPL=68.0;RPR=112.0;EPP=24.2907;EPPR=12.9896;DPRA=0.0;ODDS=250.018;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994444;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9985;Dels=0.0;FS=0.0;HaplotypeScore=5.8235;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0285;QD=18.115;ReadPosRankSum=0.2855;SOR=0.7005;ClippingRankSum=1.148	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.242:90:39:1488:51:1959:-151.957,0.0,-109.569:51:57:90:39,51:1759,0,1291:1:.:1:.:.:.:-6.43493e-05	0/1:120.242:272:144:5535:129:4945:-370.856,0.0,-423.944:128:47:272:144,128:4653,0,5377:.:1:1:.:.:.:-5.44248e-05
chr3	151899704	.	T	A	14170.65	REJECT	NS=2;DP=373;DPB=425.0;AC=4;AN=4;AF=1.0;RO=2;AO=423;PRO=0.0;PAO=0.0;QR=56;QA=16310;PQR=0.0;PQA=0.0;SRF=1;SRR=1;SAF=221;SAR=202;SRP=3.0103;SAP=4.8635;AB=0.0;ABP=0.0;RUN=1;RPP=7.9436;RPPR=7.35324;RPL=227.0;RPR=196.0;EPP=4.8635;EPPR=3.0103;DPRA=0.0;ODDS=61.7475;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992908;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.667;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.031;QD=28.615;ReadPosRankSum=-0.987;SOR=0.5305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:1:40:101:3890:-346.523,-24.0385,0.0:101:99:101:0,101:4234,303,0:1:.:1:.:.:.:-6.43493e-05	1/1:129.501:322:1:16:322:12420:-1115.62,-86.0177,0.0:321:100:322:1,320:13787,948,0:.:1:1:.:.:.:-5.44248e-05
chr3	171016279	.	T	G	9426.15	REJECT	NS=2;DP=369;DPB=411.0;AC=2;AN=4;AF=0.5;RO=100;AO=310;PRO=0.0;PAO=0.0;QR=3823;QA=11788;PQR=0.0;PQA=0.0;SRF=46;SRR=54;SAF=150;SAR=160;SRP=4.40004;SAP=3.71077;AB=0.754258;ABP=233.794;RUN=1;RPP=3.71077;RPPR=10.0459;RPL=160.0;RPR=150.0;EPP=5.27984;EPPR=7.26639;DPRA=0.0;ODDS=207.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993548;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.237;Dels=0.0;FS=1.856;HaplotypeScore=5.7817;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.383;QD=23.595;ReadPosRankSum=0.6955;SOR=0.5405;ClippingRankSum=-0.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:47:1826:35:1328:-97.3364,0.0,-142.165:35:43:82:47,35:1254,0,1760:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:328:53:1997:275:10460:-851.978,0.0,-90.8432:274:84:327:53,274:10604,0,1272:.:1:1:.:.:.:-5.44248e-05
chr3	171016302	.	C	G	8705.76	REJECT	NS=2;DP=334;DPB=374.0;AC=2;AN=4;AF=0.5;RO=86;AO=287;PRO=0.0;PAO=0.0;QR=3264;QA=10920;PQR=0.0;PQA=0.0;SRF=38;SRR=48;SAF=125;SAR=162;SRP=5.53527;SAP=13.3683;AB=0.76738;ABP=235.253;RUN=1;RPP=15.7289;RPPR=17.5541;RPL=164.0;RPR=123.0;EPP=24.2635;EPPR=17.5541;DPRA=0.0;ODDS=156.963;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993031;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.862;Dels=0.0;FS=2.363;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.18;QD=24.26;ReadPosRankSum=0.395;SOR=0.7235;ClippingRankSum=-0.486	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.061:78:42:1587:36:1318:-97.5338,0.0,-121.786:36:46:78:42,36:1225,0,1537:1:.:1:.:.:.:-6.43493e-05	0/1:118.061:295:44:1677:251:9602:-783.763,0.0,-70.9759:250:85:294:44,250:9817,0,996:.:1:1:.:.:.:-5.44248e-05
chr3	178768011	.	A	G	1002.03	REJECT	NS=1;DP=82;DPB=82.0;AC=1;AN=4;AF=0.5;RO=44;AO=38;PRO=0.0;PAO=0.0;QR=1698;QA=1431;PQR=0.0;PQA=0.0;SRF=20;SRR=24;SAF=13;SAR=25;SRP=3.79993;SAP=11.239;AB=0.463415;ABP=3.96363;RUN=1;RPP=8.7247;RPPR=12.6832;RPL=24.0;RPR=14.0;EPP=6.66752;EPPR=12.6832;DPRA=0.0;ODDS=230.727;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.894737;PAIREDR=0.931818;technology.ILLUMINA=1.0;BaseQRankSum=-0.934;FS=4.481;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.75;QD=14.3;ReadPosRankSum=0.832;SOR=1.302;ClippingRankSum=-0.413	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:44:1698:38:1431:-106.612,0.0,-130.655:37:46:79:41,36:1201,0,1460:1:.:1:.:.:.:-6.43493e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-5.44248e-05
chr3	178780691	.	G	A	10413.8	REJECT	NS=2;DP=378;DPB=436.0;AC=2;AN=4;AF=0.5;RO=102;AO=334;PRO=0.0;PAO=0.0;QR=3891;QA=12986;PQR=0.0;PQA=0.0;SRF=39;SRR=63;SAF=167;SAR=167;SRP=15.2727;SAP=3.0103;AB=0.766055;ABP=271.078;RUN=1;RPP=7.40526;RPPR=3.0103;RPL=154.0;RPR=180.0;EPP=20.5901;EPPR=5.13919;DPRA=0.0;ODDS=126.87;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9461;MQMR=60.0;PAIRED=0.997006;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9025;Dels=0.0;FS=8.5895;HaplotypeScore=5.9299;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.5895;QD=25.33;ReadPosRankSum=0.1065;SOR=0.587;ClippingRankSum=-1.019	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:61:2306:55:2146:-161.709,0.0,-176.094:54:47:115:60,54:1861,0,2047:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:320:41:1585:279:10840:-888.255,0.0,-55.8988:279:87:320:41,279:11138,0,829:.:1:1:.:.:.:-5.44248e-05
chr3	178782021	.	C	T	2336.41	PASS	SOMATIC;NS=2;DP=409;DPB=409.0;AC=1;AN=3;AF=0.25;RO=315;AO=94;PRO=0.0;PAO=0.0;QR=12013;QA=3544;PQR=0.0;PQA=0.0;SRF=138;SRR=177;SAF=44;SAR=50;SRP=13.4954;SAP=3.84193;AB=0.325175;ABP=78.9359;RUN=1;RPP=7.53805;RPPR=10.5174;RPL=40.0;RPR=54.0;EPP=10.4949;EPPR=8.80779;DPRA=0.0;ODDS=74.7632;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990476;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.786;Dels=0.0;FS=3.511;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.017;QD=10.63;ReadPosRankSum=0.681;SOR=0.501	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:119:122:4618:1:16:0.0,-31.88,-414.169:1:1:119:115,1:.:0.008621:0:.:.:.:0:.:.:0:-6.43493e-05	0/1:129.501:286:193:7395:93:3528:-239.888,0.0,-587.721:93:33:286:186,90:37.0:0.33:2:3067,0,7414:.:1:1:.:.:1:-5.44248e-05
chr3	178917005	.	A	G	4576.28	REJECT	NS=2;DP=178;DPB=200.0;AC=2;AN=4;AF=0.5;RO=45;AO=155;PRO=0.0;PAO=0.0;QR=1740;QA=5985;PQR=0.0;PQA=0.0;SRF=13;SRR=32;SAF=49;SAR=106;SRP=20.4303;SAP=48.5272;AB=0.775;ABP=134.384;RUN=1;RPP=151.637;RPPR=33.1696;RPL=129.0;RPR=26.0;EPP=5.37791;EPPR=3.44459;DPRA=0.0;ODDS=100.042;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987097;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0805;Dels=0.0;FS=3.0515;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.8915;QD=27.0;ReadPosRankSum=0.187;SOR=0.931;ClippingRankSum=-1.831	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.075:41:16:628:25:975:-76.7687,0.0,-45.4812:25:61:41:16,25:929,0,574:1:.:1:.:.:.:-6.43493e-05	0/1:120.075:158:29:1112:130:5010:-407.694,0.0,-56.9772:129:82:158:29,128:5057,0,781:.:1:1:.:.:.:-5.44248e-05
chr3	178922274	.	C	A	10240.735	REJECT	NS=2;DP=271;DPB=311.0;AC=4;AN=4;AF=1.0;RO=0;AO=311;PRO=0.0;PAO=0.0;QR=0;QA=12042;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=80;SRP=0.0;SAP=162.212;AB=0.0;ABP=0.0;RUN=1;RPP=77.0847;RPPR=0.0;RPL=104.0;RPR=207.0;EPP=3.57586;EPPR=0.0;DPRA=0.0;ODDS=54.2793;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.545;SOR=2.299	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:80:0:0:80:3085:-277.772,-21.6982,0.0:80:100:80:0,80:3380,241,0:1:.:1:.:.:.:-6.43493e-05	1/1:129.501:231:0:0:231:8957:-805.666,-62.548,0.0:231:100:231:0,231:9957,680,0:.:1:1:.:.:.:-5.44248e-05
chr3	178927410	.	A	G	3212.19	PASS	SOMATIC;NS=2;DP=424;DPB=424.0;AC=1;AN=3;AF=0.25;RO=305;AO=119;PRO=0.0;PAO=0.0;QR=11742;QA=4596;PQR=0.0;PQA=0.0;SRF=178;SRR=127;SAF=65;SAR=54;SRP=21.5283;SAP=5.21827;AB=0.375394;ABP=45.7616;RUN=1;RPP=3.02855;RPPR=6.77656;RPL=60.0;RPR=59.0;EPP=11.0575;EPPR=47.4436;DPRA=2.96262;ODDS=67.734;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983193;PAIREDR=0.986885;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.186;Dels=0.0;FS=1.946;HaplotypeScore=7.7987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.779;QD=13.28;ReadPosRankSum=0.571;SOR=0.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:103:107:4126:0:0:0.0,-28.9905,-371.346:0:0:103:100,0:.:0.0:0:.:.:.:0:.:.:0:-6.43493e-05	0/1:129.501:317:198:7616:119:4596:-327.528,0.0,-599.149:119:38:317:185,115:38.0:0.391:2:4237,0,7553:.:1:1:.:.:1:-5.44248e-05
chr3	178938747	.	A	T	4931.54	REJECT	NS=2;DP=184;DPB=213.0;AC=2;AN=4;AF=0.5;RO=45;AO=168;PRO=0.0;PAO=0.0;QR=1727;QA=6499;PQR=0.0;PQA=0.0;SRF=32;SRR=13;SAF=132;SAR=36;SRP=20.4303;SAP=122.131;AB=0.788732;ABP=157.246;RUN=1;RPP=89.9209;RPPR=38.1882;RPL=43.0;RPR=125.0;EPP=17.9521;EPPR=4.21667;DPRA=0.0;ODDS=37.465;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=56.4762;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3915;Dels=0.0;FS=0.615;HaplotypeScore=4.856;MLEAC=1;MLEAF=0.5;MQ=57.695;MQRankSum=-1.725;QD=26.785;ReadPosRankSum=0.5835;SOR=0.9175;ClippingRankSum=0.665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.675:56:27:1041:30:1181:-89.2504,0.0,-78.3153:30:53:56:26,30:1075,0,904:1:.:1:.:.:.:-6.43493e-05	0/1:117.0575:156:18:686:138:5318:-432.928,0.0,-19.4586:138:88:156:18,138:5470,0,305:.:1:1:.:.:.:-5.44248e-05
chr3	180004571	.	C	T	1146.725	REJECT	NS=2;DP=243;DPB=278.0;AC=2;AN=4;AF=0.5;RO=216;AO=62;PRO=0.0;PAO=0.0;QR=8251;QA=2326;PQR=0.0;PQA=0.0;SRF=143;SRR=73;SAF=40;SAR=22;SRP=52.2706;SAP=14.358;AB=0.223022;ABP=188.257;RUN=1;RPP=34.5317;RPPR=115.967;RPL=16.0;RPR=46.0;EPP=6.51267;EPPR=4.45795;DPRA=0.0;ODDS=92.6167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.967742;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5985;Dels=0.0;FS=3.817;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6155;QD=9.205;ReadPosRankSum=-0.4165;SOR=0.886;ClippingRankSum=1.599	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:36:1364:33:1214:-90.6336,0.0,-104.147:33:48:68:34,33:1081,0,1099:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:208:180:6887:29:1112:-43.4334,0.0,-562.949:28:13:208:180,28:589,0,7066:.:1:1:.:.:.:-5.44248e-05
chr3	181330688	.	A	T	1624.48	REJECT	NS=2;DP=337;DPB=384.0;AC=2;AN=4;AF=0.5;RO=296;AO=88;PRO=0.0;PAO=0.0;QR=11304;QA=3384;PQR=0.0;PQA=0.0;SRF=137;SRR=159;SAF=32;SAR=56;SRP=6.56095;SAP=17.2236;AB=0.229167;ABP=247.663;RUN=1;RPP=3.0103;RPPR=3.47981;RPL=44.0;RPR=44.0;EPP=3.0103;EPPR=9.61275;DPRA=0.0;ODDS=182.937;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1255;Dels=0.0;FS=6.3335;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.074;QD=9.32;ReadPosRankSum=1.089;SOR=0.8825;ClippingRankSum=0.66	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:49:1833:43:1607:-119.751,0.0,-140.095:41:46:89:47,40:1338,0,1607:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:291:247:9471:45:1777:-81.1073,0.0,-772.805:45:15:291:246,45:1122,0,9707:.:1:1:.:.:.:-5.44248e-05
chr3	181330770	.	G	A	5442.085	REJECT	NS=2;DP=238;DPB=271.0;AC=3;AN=4;AF=0.75;RO=74;AO=197;PRO=0.0;PAO=0.0;QR=2735;QA=7495;PQR=0.0;PQA=0.0;SRF=39;SRR=35;SAF=51;SAR=146;SRP=3.47981;SAP=102.49;AB=0.640777;ABP=38.4707;RUN=1;RPP=78.9457;RPPR=29.4201;RPL=140.0;RPR=57.0;EPP=9.89949;EPPR=14.748;DPRA=0.0;ODDS=41.5625;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984772;PAIREDR=0.959459;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.59;Dels=0.0;FS=19.5685;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.521;QD=25.42;ReadPosRankSum=0.344;SOR=2.0775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:64:0:0:65:2454:-221.029,-17.6244,0.0:64:100:64:0,63:2614,190,0:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:205:74:2735:132:5041:-397.722,0.0,-190.27:131:64:205:74,131:4969,0,2409:.:1:1:.:.:.:-5.44248e-05
chr3	183211906	.	A	G	9000.485	REJECT	NS=2;DP=378;DPB=436.0;AC=3;AN=4;AF=0.75;RO=116;AO=319;PRO=0.0;PAO=0.0;QR=4478;QA=12327;PQR=0.0;PQA=0.0;SRF=56;SRR=60;SAF=185;SAR=134;SRP=3.30981;SAP=20.7156;AB=0.639752;ABP=57.6343;RUN=1;RPP=3.56168;RPPR=15.6647;RPL=155.0;RPR=164.0;EPP=6.61127;EPPR=3.68421;DPRA=0.0;ODDS=71.4737;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984326;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.068;Dels=0.0;FS=4.0085;HaplotypeScore=2.9945;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.856;QD=28.98;ReadPosRankSum=-1.509;SOR=1.0655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.848:111:0:0:113:4334:-390.051,-30.6147,0.0:111:100:111:0,109:4334,327,0:1:.:1:.:.:.:-6.43493e-05	0/1:118.848:321:116:4478:206:7993:-631.684,0.0,-315.542:205:64:321:116,204:7893,0,4039:.:1:1:.:.:.:-5.44248e-05
chr3	183212026	.	C	T	1967.54	REJECT	NS=2;DP=336;DPB=381.0;AC=2;AN=4;AF=0.5;RO=286;AO=95;PRO=0.0;PAO=0.0;QR=11026;QA=3640;PQR=0.0;PQA=0.0;SRF=87;SRR=199;SAF=16;SAR=79;SRP=98.2514;SAP=93.7321;AB=0.249344;ABP=210.93;RUN=1;RPP=4.86177;RPPR=15.1584;RPL=52.0;RPR=43.0;EPP=3.21602;EPPR=4.49844;DPRA=0.0;ODDS=138.647;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98951;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7945;Dels=0.0;FS=16.556;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.515;QD=12.015;ReadPosRankSum=-0.7965;SOR=2.224;ClippingRankSum=0.547	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:36:1400:53:2050:-160.417,0.0,-101.896:52:59:88:36,52:1875,0,1178:1:.:1:.:.:.:-6.43493e-05	0/1:129.501:291:250:9626:42:1590:-63.9505,0.0,-786.728:42:14:291:249,42:912,0,9813:.:1:1:.:.:.:-5.44248e-05
chr3	183226114	.	G	T	2557.795	REJECT	NS=2;DP=392;DPB=450.0;AC=2;AN=4;AF=0.5;RO=337;AO=113;PRO=0.0;PAO=0.0;QR=12708;QA=4399;PQR=0.0;PQA=0.0;SRF=167;SRR=170;SAF=56;SAR=57;SRP=3.06829;SAP=3.02952;AB=0.251111;ABP=245.134;RUN=1;RPP=3.02952;RPPR=5.33642;RPL=56.0;RPR=57.0;EPP=3.49071;EPPR=4.09926;DPRA=0.0;ODDS=183.711;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.997033;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.425;Dels=0.0;FS=3.225;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2395;QD=12.365;ReadPosRankSum=1.0655;SOR=0.71;ClippingRankSum=1.231	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.36:115:52:1953:64:2499:-193.488,0.0,-144.322:64:55:115:50,64:2461,0,1727:1:.:1:.:.:.:-6.43493e-05	0/1:121.36:334:285:10755:49:1900:-80.5233,0.0,-876.88:49:15:334:285,49:1162,0,10919:.:1:1:.:.:.:-5.44248e-05
chr3	187447032	.	G	A	14466.5	REJECT	NS=2;DP=391;DPB=453.0;AC=4;AN=4;AF=1.0;RO=0;AO=453;PRO=0.0;PAO=0.0;QR=0;QA=16858;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=228;SRP=0.0;SAP=3.05344;AB=0.0;ABP=0.0;RUN=1;RPP=8.88238;RPPR=0.0;RPL=209.0;RPR=244.0;EPP=4.08885;EPPR=0.0;DPRA=0.0;ODDS=80.8962;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997792;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.8458;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.265;SOR=0.699	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.62:121:0:0:123:4456:-400.987,-33.2577,0.0:121:100:121:0,120:4648,357,0:1:.:1:.:.:.:-6.43493e-05	1/1:127.62:330:0:0:330:12402:-1115.51,-89.3319,0.0:330:100:330:0,330:13846,972,0:.:1:1:.:.:.:-5.44248e-05
chr3	187451609	.	A	G	5797.665000000001	REJECT	NS=2;DP=162;DPB=187.0;AC=4;AN=4;AF=1.0;RO=0;AO=186;PRO=0.0;PAO=0.0;QR=0;QA=7078;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=30;SAR=156;SRP=0.0;SAP=188.356;AB=0.0;ABP=0.0;RUN=1;RPP=212.639;RPPR=0.0;RPL=160.0;RPR=26.0;EPP=81.5102;EPPR=0.0;DPRA=0.0;ODDS=34.9247;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9238;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.35;SOR=3.0695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.676:49:0:0:49:1873:-168.786,-13.2926,0.0:49:100:49:0,49:2056,147,0:1:.:1:.:.:.:-6.43493e-05	1/1:129.501:137:0:0:137:5205:-468.373,-37.1072,0.0:137:100:137:0,137:5803,403,0:.:1:1:.:.:.:-5.44248e-05
chr4	1801511	.	C	T	5671.5650000000005	REJECT	NS=2;DP=381;DPB=436.0;AC=2;AN=4;AF=0.5;RO=226;AO=210;PRO=0.0;PAO=0.0;QR=8579;QA=7907;PQR=0.0;PQA=0.0;SRF=114;SRR=112;SAF=102;SAR=108;SRP=3.04873;SAP=3.38255;AB=0.481651;ABP=4.28529;RUN=1;RPP=7.14644;RPPR=5.47002;RPL=95.0;RPR=115.0;EPP=3.17575;EPPR=3.16403;DPRA=0.0;ODDS=350.884;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2465;Dels=0.0;FS=4.9135;HaplotypeScore=6.879;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2145;QD=17.525;ReadPosRankSum=0.3895;SOR=0.839;ClippingRankSum=-0.613	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:54:2031:56:2132:-162.106,0.0,-152.983:55:51:108:51,55:1963,0,1735:1:.:1:.:.:.:2.36041e-06	0/1:129.501:326:172:6548:154:5775:-431.176,0.0,-500.71:154:47:326:172,154:5504,0,6362:.:1:1:.:.:.:-0.0106171
chr4	1807894	.	G	A	14752.65	REJECT	NS=2;DP=387;DPB=444.0;AC=4;AN=4;AF=1.0;RO=0;AO=444;PRO=0.0;PAO=0.0;QR=0;QA=17078;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=243;SRP=0.0;SAP=11.6375;AB=0.0;ABP=0.0;RUN=1;RPP=9.34865;RPPR=0.0;RPL=240.0;RPR=204.0;EPP=3.49937;EPPR=0.0;DPRA=0.0;ODDS=74.1887;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988739;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8794;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.57;SOR=0.955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:112:4294:-386.463,-30.3447,0.0:111:100:111:0,110:4444,330,0:1:.:1:.:.:.:2.36041e-06	1/1:129.501:331:0:0:332:12784:-1149.79,-89.8947,0.0:331:100:331:0,331:14229,981,0:.:1:1:.:.:.:-0.0106171
chr4	1954945	.	A	G	13037.3	REJECT	NS=2;DP=343;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=401;PRO=0.0;PAO=0.0;QR=0;QA=15444;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=222;SAR=179;SRP=0.0;SAP=13.0229;AB=0.0;ABP=0.0;RUN=1;RPP=8.90739;RPPR=0.0;RPL=184.0;RPR=217.0;EPP=58.2502;EPPR=0.0;DPRA=0.0;ODDS=75.4868;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990025;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.7934;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.73;SOR=0.881	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.0275:113:0:0:114:4418:-397.633,-30.9084,0.0:113:100:113:0,112:4653,337,0:1:.:1:.:.:.:2.36041e-06	1/1:127.0275:286:0:0:287:11026:-991.709,-77.707,0.0:286:100:286:0,286:12323,852,0:.:1:1:.:.:.:-0.0106171
chr4	1980346	.	A	T	5483.96	REJECT	NS=2;DP=316;DPB=360.0;AC=2;AN=4;AF=0.5;RO=170;AO=190;PRO=0.0;PAO=0.0;QR=6490;QA=7358;PQR=0.0;PQA=0.0;SRF=100;SRR=70;SAF=123;SAR=67;SRP=14.5063;SAP=38.851;AB=0.527778;ABP=5.42305;RUN=1;RPP=62.2572;RPPR=69.2274;RPL=59.0;RPR=131.0;EPP=6.71323;EPPR=10.3678;DPRA=0.0;ODDS=277.618;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988235;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2705;Dels=0.0;FS=2.915;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.098;QD=19.08;ReadPosRankSum=-0.19;SOR=0.85;ClippingRankSum=0.374	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.773:86:45:1706:42:1635:-123.613,0.0,-130.001:42:48:86:43,42:1544,0,1491:1:.:1:.:.:.:2.36041e-06	0/1:117.773:273:125:4784:148:5723:-440.827,0.0,-356.374:148:54:273:125,148:5578,0,4529:.:1:1:.:.:.:-0.0106171
chr4	16514073	.	CA	C	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:35,0:35:0.314286,0.0:60.0,0.0:37.8839,0.0:0.00595238,0.0:0,0:0,0:30,5,0,0:0:0:35:.:.:.:.:0:.:2.36041e-06	0/1:46,34:80:0.152174,0.0:60.0,60.5882:38.7551,38.4592:0.0,0.0:81,10:19,10:40,6,29,5:34:43:80:.:.:.:.:1:.:-0.0106171
chr4	20256722	.	G	A	794.014	REJECT	NS=1;DP=60;DPB=60.0;AC=1;AN=4;AF=0.5;RO=29;AO=31;PRO=0.0;PAO=0.0;QR=1077;QA=1169;PQR=0.0;PQA=0.0;SRF=3;SRR=26;SAF=4;SAR=27;SRP=42.621;SAP=40.0654;AB=0.516667;ABP=3.15506;RUN=1;RPP=8.68415;RPPR=3.08518;RPL=20.0;RPR=11.0;EPP=8.68415;EPPR=4.88226;DPRA=0.0;ODDS=165.151;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.77;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.124;QD=18.1;ReadPosRankSum=0.272;SOR=0.525;ClippingRankSum=2.186	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:59:29:1077:31:1169:-89.0439,0.0,-80.7461:30:52:59:28,30:1078,0,953:1:.:1:.:.:.:2.36041e-06	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0106171
chr4	20492380	.	A	G	3527.05	PASS	SOMATIC;NS=2;DP=426;DPB=426.0;AC=1;AN=3;AF=0.25;RO=295;AO=130;PRO=0.0;PAO=0.0;QR=11379;QA=4974;PQR=0.0;PQA=0.0;SRF=169;SRR=126;SAF=65;SAR=65;SRP=16.6206;SAP=3.0103;AB=0.402477;ABP=29.6932;RUN=1;RPP=11.0949;RPPR=8.37641;RPL=54.0;RPR=76.0;EPP=16.1059;EPPR=11.0263;DPRA=3.13592;ODDS=65.2422;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99661;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.695;Dels=0.0;FS=7.674;HaplotypeScore=7.8296;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.156;QD=14.25;ReadPosRankSum=-1.357;SOR=0.421	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.262:100:103:3937:0:0:0.0,-27.9084,-354.36:0:0:100:98,0:.:0.0:0:.:.:.:0:.:.:0:2.36041e-06	0/1:119.131:322:192:7442:130:4974:-360.163,0.0,-582.149:130:40:321:182,122:38.0:0.397:2:4618,0,7318:.:1:1:.:.:1:-0.0106171
chr4	20492417	.	G	T	8641.64	REJECT	NS=2;DP=381;DPB=427.0;AC=3;AN=4;AF=0.75;RO=127;AO=300;PRO=0.0;PAO=0.0;QR=4936;QA=11495;PQR=0.0;PQA=0.0;SRF=53;SRR=74;SAF=156;SAR=144;SRP=10.5506;SAP=4.05261;AB=0.623145;ABP=47.3998;RUN=1;RPP=4.05261;RPPR=7.95168;RPL=156.0;RPR=144.0;EPP=3.47355;EPPR=3.16418;DPRA=0.0;ODDS=57.1719;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996667;PAIREDR=0.992126;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.722;Dels=0.0;FS=4.703;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.753;QD=25.665;ReadPosRankSum=-0.837;SOR=0.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.5415:89:0:0:90:3454:-310.948,-24.4035,0.0:89:100:89:0,88:3745,265,0:1:.:1:.:.:.:2.36041e-06	0/1:119.5415:336:127:4936:210:8041:-631.943,0.0,-352.693:209:62:336:127,209:7944,0,4526:.:1:1:.:.:.:-0.0106171
chr4	20520993	.	T	C	10752.849999999999	REJECT	NS=2;DP=287;DPB=332.0;AC=4;AN=4;AF=1.0;RO=0;AO=332;PRO=0.0;PAO=0.0;QR=0;QA=12715;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=226;SAR=106;SRP=0.0;SAP=97.1946;AB=0.0;ABP=0.0;RUN=1;RPP=85.0553;RPPR=0.0;RPL=110.0;RPR=222.0;EPP=49.1606;EPPR=0.0;DPRA=0.0;ODDS=59.2258;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996988;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.62;SOR=1.69	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:88:3374:-303.738,-23.8464,0.0:87:100:87:0,86:3403,258,0:1:.:1:.:.:.:2.36041e-06	1/1:129.501:243:0:0:244:9341:-840.226,-66.0698,0.0:243:100:243:0,243:10361,716,0:.:1:1:.:.:.:-0.0106171
chr4	20533700	.	A	AT	4524.93	REJECT	NS=2;DP=239;DPB=297.188;AC=3;AN=4;AF=0.75;RO=53;AO=177;PRO=44.0;PAO=48.0;QR=2020;QA=6548;PQR=1583.5;PQA=1766.5;SRF=11;SRR=42;SAF=41;SAR=136;SRP=42.3836;SAP=113.731;AB=0.685393;ABP=56.1504;RUN=1;RPP=48.6603;RPPR=4.03458;RPL=119.0;RPR=58.0;EPP=3.61144;EPPR=9.93443;DPRA=0.0;ODDS=19.3779;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4515;FS=0.348;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.015;QD=17.65;RPA=8,9;RU=T;ReadPosRankSum=2.229;SOR=0.6555;STR;ClippingRankSum=0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:91.57865:66:2:74:55:2066:-199.413,-7.60623,0.0:62:96:64:3,69:1885,125,0:1:.:1:.:.:.:2.36041e-06	0/1:129.501:210:51:1946:122:4482:-379.454,0.0,-154.985:128:69:184:62,134:3513,0,1384:.:1:1:.:.:.:-0.0106171
chr4	20552510	.	A	C	5194.780000000001	REJECT	NS=2;DP=386;DPB=439.0;AC=2;AN=4;AF=0.5;RO=238;AO=200;PRO=0.0;PAO=0.0;QR=8996;QA=7385;PQR=0.0;PQA=0.0;SRF=132;SRR=106;SAF=108;SAR=92;SRP=9.17801;SAP=5.78978;AB=0.455581;ABP=10.5338;RUN=1;RPP=18.6883;RPPR=25.8199;RPL=119.0;RPR=81.0;EPP=44.746;EPPR=38.0823;DPRA=0.0;ODDS=312.827;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985;PAIREDR=0.995798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0225;Dels=0.0;FS=0.375;HaplotypeScore=12.6226;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0345;QD=15.395;ReadPosRankSum=-0.5815;SOR=0.6285;ClippingRankSum=-2.061	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.6905:101:51:1888:52:1852:-138.813,0.0,-142.083:51:50:101:49,50:1575,0,1625:1:.:1:.:.:.:2.36041e-06	0/1:124.6905:334:187:7108:148:5533:-406.982,0.0,-548.628:147:44:333:186,146:5081,0,6854:.:1:1:.:.:.:-0.0106171
chr4	20569254	.	A	G	8308.0	REJECT	NS=2;DP=298;DPB=342.0;AC=2;AN=4;AF=0.5;RO=69;AO=273;PRO=0.0;PAO=0.0;QR=2629;QA=10536;PQR=0.0;PQA=0.0;SRF=23;SRR=46;SAF=82;SAR=191;SRP=19.6583;SAP=97.5131;AB=0.798246;ABP=267.244;RUN=1;RPP=66.0148;RPPR=12.1053;RPL=181.0;RPR=92.0;EPP=23.6989;EPPR=8.32883;DPRA=0.0;ODDS=55.7397;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989011;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.206;Dels=0.0;FS=2.0895;HaplotypeScore=6.8297;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0335;QD=23.18;ReadPosRankSum=-0.7355;SOR=1.007;ClippingRankSum=0.702	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:41:1574:46:1766:-135.409,0.0,-118.115:46:53:87:41,46:1800,0,3166:1:.:1:.:.:.:2.36041e-06	0/1:129.501:254:28:1055:227:8770:-719.788,0.0,-25.8372:226:89:254:28,226:8998,0,415:.:1:1:.:.:.:-0.0106171
chr4	20569259	.	C	T	8053.21	REJECT	NS=2;DP=281;DPB=324.0;AC=2;AN=4;AF=0.5;RO=62;AO=262;PRO=0.0;PAO=0.0;QR=2401;QA=10199;PQR=0.0;PQA=0.0;SRF=19;SRR=43;SAF=80;SAR=182;SRP=23.184;SAP=89.2393;AB=0.808642;ABP=271.093;RUN=1;RPP=79.3931;RPPR=17.0198;RPL=179.0;RPR=83.0;EPP=19.056;EPPR=4.27115;DPRA=0.0;ODDS=29.3747;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992366;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1195;Dels=0.0;FS=2.7785;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.238;QD=23.625;ReadPosRankSum=-2.222;SOR=0.8935;ClippingRankSum=-0.436	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.675:85:40:1525:45:1760:-135.41,0.0,-114.243:45:53:85:40,45:1766,0,3169:1:.:1:.:.:.:2.36041e-06	0/1:112.468:239:22:876:217:8439:-694.349,0.0,-14.0441:217:91:239:22,217:8748,0,265:.:1:1:.:.:.:-0.0106171
chr4	25507545	.	C	A	14106.3	REJECT	NS=2;DP=367;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=16312;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=190;SRP=0.0;SAP=11.6807;AB=0.0;ABP=0.0;RUN=1;RPP=27.567;RPPR=0.0;RPL=176.0;RPR=245.0;EPP=12.5472;EPPR=0.0;DPRA=0.0;ODDS=70.4754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992874;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.865;SOR=0.9605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:106:4116:-370.457,-28.732,0.0:105:100:105:0,105:4197,315,0:1:.:1:.:.:.:2.36041e-06	1/1:129.501:314:0:0:315:12196:-1096.94,-85.3218,0.0:314:100:314:0,314:13652,939,0:.:1:1:.:.:.:-0.0106171
chr4	27162478	.	T	G	5340.265	REJECT	NS=2;DP=369;DPB=425.0;AC=2;AN=4;AF=0.5;RO=227;AO=198;PRO=0.0;PAO=0.0;QR=8768;QA=7510;PQR=0.0;PQA=0.0;SRF=108;SRR=119;SAF=80;SAR=118;SRP=4.16778;SAP=18.8467;AB=0.465882;ABP=7.30726;RUN=1;RPP=4.107;RPPR=4.16778;RPL=104.0;RPR=94.0;EPP=3.40511;EPPR=5.16264;DPRA=0.0;ODDS=336.77;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994949;PAIREDR=0.991189;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.009;Dels=0.0;FS=8.1365;HaplotypeScore=7.7568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5485;QD=15.89;ReadPosRankSum=0.446;SOR=1.324;ClippingRankSum=-0.304	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5075:107:57:2188:52:1976:-148.313,0.0,-167.398:50:47:107:57,49:1657,0,1974:1:.:1:.:.:.:2.36041e-06	0/1:118.5075:315:170:6580:146:5534:-412.139,0.0,-506.294:145:46:315:169,145:5182,0,6423:.:1:1:.:.:.:-0.0106171
chr4	41749668	.	C	T	2495.63	REJECT	NS=2;DP=438;DPB=507.0;AC=2;AN=4;AF=0.5;RO=380;AO=127;PRO=0.0;PAO=0.0;QR=14393;QA=4731;PQR=0.0;PQA=0.0;SRF=196;SRR=184;SAF=67;SAR=60;SRP=3.83317;SAP=3.84811;AB=0.250493;ABP=277.16;RUN=1;RPP=6.8574;RPPR=3.03316;RPL=56.0;RPR=71.0;EPP=3.0274;EPPR=19.6735;DPRA=0.0;ODDS=246.494;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992126;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7955;Dels=0.0;FS=1.07;HaplotypeScore=6.8644;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5505;QD=9.915;ReadPosRankSum=-0.1155;SOR=0.7515;ClippingRankSum=0.51	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:136:72:2727:65:2428:-181.383,0.0,-208.295:65:47:136:71,65:2194,0,2454:1:.:1:.:.:.:2.36041e-06	0/1:129.501:370:308:11666:62:2303:-107.388,0.0,-949.089:62:17:370:308,62:1475,0,11914:.:1:1:.:.:.:-0.0106171
chr4	45001171	.	G	A	14476.6	REJECT	NS=2;DP=380;DPB=425.0;AC=4;AN=4;AF=1.0;RO=0;AO=425;PRO=0.0;PAO=0.0;QR=0;QA=16279;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=260;SAR=165;SRP=0.0;SAP=49.1222;AB=0.0;ABP=0.0;RUN=1;RPP=18.4661;RPPR=0.0;RPL=185.0;RPR=240.0;EPP=65.9626;EPPR=0.0;DPRA=0.0;ODDS=57.9733;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990588;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8905;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.3;SOR=1.1675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:86:3247:-292.32,-23.3024,0.0:86:100:86:0,86:3414,258,0:1:.:1:.:.:.:2.36041e-06	1/1:129.501:337:0:0:339:13032:-1172.12,-91.8037,0.0:337:100:337:0,336:14541,1005,0:.:1:1:.:.:.:-0.0106171
chr4	45001191	.	C	T	15511.75	REJECT	NS=2;DP=410;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=454;PRO=0.0;PAO=0.0;QR=0;QA=17373;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=246;SAR=208;SRP=0.0;SAP=9.91692;AB=0.0;ABP=0.0;RUN=1;RPP=3.02943;RPPR=0.0;RPL=226.0;RPR=228.0;EPP=48.946;EPPR=0.0;DPRA=0.0;ODDS=59.8465;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993392;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8572;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.695;SOR=0.8385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.1875:88:0:0:89:3382:-304.458,-24.116,0.0:88:100:88:0,88:3566,264,0:1:.:1:.:.:.:2.36041e-06	1/1:122.1875:366:0:0:365:13991:-1258.3,-98.8155,0.0:364:100:364:0,363:15520,1072,0:.:1:1:.:.:.:-0.0106171
chr4	45001226	.	A	G	8686.285	PASS	DP=200;AC=4;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.9293;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.02;SOR=0.9395	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,95:95:99.0:4253,286,0:95:100:95:1:.:.:.:.:.:2.36041e-06	1/1:0,305:305:99.0:13176,909,0:305:100:305:.:1:.:.:.:.:-0.0106171
chr4	45001226	.	ATGA	GTGC	13618.8	REJECT	NS=2;DP=388;DPB=396.25;AC=4;AN=4;AF=1.0;RO=0;AO=386;PRO=0.0;PAO=17.0;QR=0;QA=14569;PQR=0.0;PQA=641.0;SRF=0;SRR=0;SAF=170;SAR=216;SRP=0.0;SAP=14.914;AB=0.0;ABP=0.0;RUN=1;RPP=13.9014;RPPR=0.0;RPL=215.0;RPR=171.0;EPP=3.37034;EPPR=0.0;DPRA=0.0;ODDS=62.3289;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=2.0;LEN=4;MQM=60.0;MQMR=0.0;PAIRED=0.989637;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:148.178:88:0:0:88:3341:-317.772,-25.194,0.0:88:100:88:.:.:1:.:.:.:2.36041e-06	1/1:148.178:300:0:0:298:11228:-1050.6,-83.9229,0.0:298:100:298:.:.:1:.:.:.:-0.0106171
chr4	45001229	.	A	C	8541.785	PASS	DP=196;AC=4;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.895;SOR=1.012	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,90:90:99.0:4260,286,0:90:100:90:1:.:.:.:.:.:2.36041e-06	1/1:0,300:301:99.0:12880,891,0:300:100:300:.:1:.:.:.:.:-0.0106171
chr4	45001235	.	C	T	13004.45	REJECT	NS=2;DP=342;DPB=388.0;AC=4;AN=4;AF=1.0;RO=0;AO=388;PRO=0.0;PAO=0.0;QR=0;QA=14907;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=162;SAR=226;SRP=0.0;SAP=25.9339;AB=0.0;ABP=0.0;RUN=1;RPP=42.4998;RPPR=0.0;RPL=236.0;RPR=152.0;EPP=3.09985;EPPR=0.0;DPRA=0.0;ODDS=59.2717;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989691;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7785;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.385;SOR=1.1285	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.6015:88:0:0:88:3438:-309.506,-23.8663,0.0:88:100:88:0,88:4028,271,0:1:.:1:.:.:.:2.36041e-06	1/1:123.6015:298:0:0:300:11469:-1031.56,-81.2245,0.0:298:100:298:0,297:12731,882,0:.:1:1:.:.:.:-0.0106171
chr4	55130078	.	T	C	1805.51	REJECT	NS=2;DP=401;DPB=451.0;AC=2;AN=4;AF=0.5;RO=357;AO=93;PRO=0.0;PAO=0.0;QR=13649;QA=3443;PQR=0.0;PQA=0.0;SRF=151;SRR=206;SAF=39;SAR=54;SRP=21.41;SAP=8.26386;AB=0.206208;ABP=341.129;RUN=1;RPP=4.15441;RPPR=10.4614;RPL=43.0;RPR=50.0;EPP=3.22044;EPPR=6.22797;DPRA=0.0;ODDS=78.5143;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9608;PAIRED=0.989247;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3365;Dels=0.0;FS=0.3905;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=0.6105;QD=10.07;ReadPosRankSum=0.1355;SOR=0.6565;ClippingRankSum=1.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:45:1711:54:1997:-152.923,0.0,-127.229:53:55:97:43,53:1822,0,1529:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:352:312:11938:39:1446:-35.0091,0.0,-978.691:39:11:351:312,39:540,0,12291:.:1:1:.:.:.:-0.00190096
chr4	55130154	.	G	A	783.537	REJECT	NS=2;DP=212;DPB=237.0;AC=2;AN=4;AF=0.5;RO=187;AO=49;PRO=0.0;PAO=0.0;QR=6446;QA=1714;PQR=0.0;PQA=0.0;SRF=66;SRR=121;SAF=18;SAR=31;SRP=38.1371;SAP=10.4997;AB=0.206751;ABP=180.036;RUN=1;RPP=63.6786;RPPR=233.871;RPL=43.0;RPR=6.0;EPP=4.11819;EPPR=12.7761;DPRA=0.0;ODDS=32.2554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9786;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5155;Dels=0.0;FS=0.63;HaplotypeScore=62.9861;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.693;QD=10.82;ReadPosRankSum=0.326;SOR=0.8795;ClippingRankSum=-0.732	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:44:21:695:28:945:-72.2904,0.0,-49.3825:26:58:44:16,24:827,0,534:1:.:1:.:.:.:-6.58513e-05	0/1:115.813:188:166:5751:21:769:-18.711,0.0,-466.853:21:11:187:166,21:343,0,5666:.:1:1:.:.:.:-0.00190096
chr4	55133726	.	T	G	1322.99	REJECT	NS=2;DP=347;DPB=393.0;AC=2;AN=4;AF=0.5;RO=319;AO=74;PRO=0.0;PAO=0.0;QR=12106;QA=2745;PQR=0.0;PQA=0.0;SRF=167;SRR=152;SAF=34;SAR=40;SRP=4.5419;SAP=4.06669;AB=0.188295;ABP=334.671;RUN=1;RPP=4.88833;RPPR=18.0472;RPL=33.0;RPR=41.0;EPP=10.5224;EPPR=3.18048;DPRA=0.0;ODDS=59.2102;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.419;Dels=0.0;FS=2.697;HaplotypeScore=2.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.368;QD=7.905;ReadPosRankSum=0.528;SOR=0.777;ClippingRankSum=-0.134	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:51:1908:41:1545:-114.151,0.0,-146.856:40:44:91:50,40:1333,0,1689:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:301:268:10198:33:1200:-26.4109,0.0,-835.836:33:11:301:268,33:423,0,10541:.:1:1:.:.:.:-0.00190096
chr4	55133936	.	C	T	984.54	REJECT	NS=2;DP=181;DPB=209.0;AC=2;AN=4;AF=0.5;RO=155;AO=54;PRO=0.0;PAO=0.0;QR=5931;QA=2054;PQR=0.0;PQA=0.0;SRF=57;SRR=98;SAF=17;SAR=37;SRP=26.5603;SAP=19.0953;AB=0.258373;ABP=108.997;RUN=1;RPP=55.1256;RPPR=86.0726;RPL=45.0;RPR=9.0;EPP=10.8919;EPPR=4.14507;DPRA=0.0;ODDS=131.1;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.014;Dels=0.0;FS=5.7425;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0105;QD=10.275;ReadPosRankSum=-0.22;SOR=1.325;ClippingRankSum=-0.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.9225:54:31:1182:24:909:-66.9728,0.0,-91.5905:24:44:54:29,24:846,0,1042:1:.:1:.:.:.:-6.58513e-05	0/1:122.9225:154:124:4749:30:1145:-61.3195,0.0,-385.581:30:19:154:124,30:816,0,4829:.:1:1:.:.:.:-0.00190096
chr4	55139771	.	T	C	2230.7349999999997	REJECT	NS=2;DP=381;DPB=441.0;AC=2;AN=4;AF=0.5;RO=332;AO=107;PRO=0.0;PAO=0.0;QR=12306;QA=4077;PQR=0.0;PQA=0.0;SRF=186;SRR=146;SAF=56;SAR=51;SRP=13.4752;SAP=3.51765;AB=0.24263;ABP=256.738;RUN=1;RPP=15.6941;RPPR=3.11495;RPL=41.0;RPR=66.0;EPP=20.0777;EPPR=15.6729;DPRA=0.0;ODDS=157.736;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996988;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.806;Dels=0.0;FS=6.6205;HaplotypeScore=7.7419;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.292;QD=10.355;ReadPosRankSum=0.679;SOR=0.735;ClippingRankSum=0.521	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4735:118:59:2190:61:2327:-176.918,0.0,-164.607:60:51:118:57,60:2092,0,1980:1:.:1:.:.:.:-6.58513e-05	0/1:118.4735:321:273:10116:46:1750:-71.5241,0.0,-823.557:46:14:319:273,46:1015,0,10262:.:1:1:.:.:.:-0.00190096
chr4	55141055	.	A	G	14387.95	REJECT	NS=2;DP=383;DPB=445.0;AC=4;AN=4;AF=1.0;RO=0;AO=443;PRO=0.0;PAO=0.0;QR=0;QA=16983;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=199;SRP=0.0;SAP=12.9363;AB=0.0;ABP=0.0;RUN=1;RPP=5.60332;RPPR=0.0;RPL=233.0;RPR=210.0;EPP=3.0152;EPPR=0.0;DPRA=0.0;ODDS=81.7029;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997743;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.49;SOR=0.9385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.996:123:0:0:124:4801:-432.057,-33.6081,0.0:123:100:123:0,122:4979,367,0:1:.:1:.:.:.:-6.58513e-05	1/1:123.996:321:0:0:319:12182:-1095.67,-86.3643,0.0:319:100:319:0,319:13582,942,0:.:1:1:.:.:.:-0.00190096
chr4	55143577	.	G	A	1885.29	REJECT	NS=2;DP=384;DPB=434.0;AC=2;AN=4;AF=0.5;RO=342;AO=92;PRO=0.0;PAO=0.0;QR=13085;QA=3516;PQR=0.0;PQA=0.0;SRF=176;SRR=166;SAF=43;SAR=49;SRP=3.64523;SAP=3.86001;AB=0.211982;ABP=315.722;RUN=1;RPP=3.0103;RPPR=8.7247;RPL=46.0;RPR=46.0;EPP=3.10471;EPPR=3.23888;DPRA=0.0;ODDS=88.0366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997076;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.758;Dels=0.0;FS=5.082;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1225;QD=10.4;ReadPosRankSum=-1.5205;SOR=0.789;ClippingRankSum=-0.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.294:97:45:1721:54:2079:-160.295,0.0,-128.094:52:54:97:45,51:1863,0,1570:1:.:1:.:.:.:-6.58513e-05	0/1:117.294:334:297:11364:38:1437:-38.9239,0.0,-931.403:38:11:334:296,38:593,0,11666:.:1:1:.:.:.:-0.00190096
chr4	55152040	.	C	T	1456.1799999999998	REJECT	NS=2;DP=330;DPB=378.0;AC=2;AN=4;AF=0.5;RO=298;AO=79;PRO=0.0;PAO=0.0;QR=11354;QA=2928;PQR=0.0;PQA=0.0;SRF=197;SRR=101;SAF=45;SAR=34;SRP=70.1656;SAP=6.33623;AB=0.208995;ABP=281.051;RUN=1;RPP=6.33623;RPPR=8.72317;RPL=34.0;RPR=45.0;EPP=15.1321;EPPR=21.2274;DPRA=0.0;ODDS=93.8528;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.1342;PAIRED=1.0;PAIREDR=0.993289;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0255;Dels=0.0;FS=3.963;HaplotypeScore=6.9295;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-1.543;QD=8.5;ReadPosRankSum=0.8255;SOR=0.38;ClippingRankSum=-0.529	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.472:93:51:1931:44:1623:-120.346,0.0,-148.131:43:46:93:50,42:1400,0,1812:1:.:1:.:.:.:-6.58513e-05	0/1:119.472:282:247:9423:35:1305:-41.029,0.0,-771.246:35:12:281:246,35:618,0,9630:.:1:1:.:.:.:-0.00190096
chr4	55161254	.	C	T	3654.49	REJECT	NS=2;DP=145;DPB=169.0;AC=2;AN=4;AF=0.5;RO=41;AO=128;PRO=0.0;PAO=0.0;QR=1582;QA=4837;PQR=0.0;PQA=0.0;SRF=35;SRR=6;SAF=95;SAR=33;SRP=47.552;SAP=68.2223;AB=0.757396;ABP=100.264;RUN=1;RPP=106.223;RPPR=36.112;RPL=25.0;RPR=103.0;EPP=9.79615;EPPR=18.3165;DPRA=0.0;ODDS=26.2356;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.95122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7535;Dels=0.0;FS=3.396;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.358;QD=23.845;ReadPosRankSum=0.266;SOR=0.3055;ClippingRankSum=0.979	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.432:47:27:1037:20:735:-53.4906,0.0,-80.7151:20:43:47:27,20:642,0,985:1:.:1:.:.:.:-6.58513e-05	0/1:106.4525:121:14:545:108:4102:-336.118,0.0,-15.9945:108:89:121:13,108:4218,0,215:.:1:1:.:.:.:-0.00190096
chr4	55161391	.	T	C	15104.95	REJECT	NS=2;DP=397;DPB=458.0;AC=4;AN=4;AF=1.0;RO=0;AO=457;PRO=0.0;PAO=0.0;QR=0;QA=17616;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=230;SAR=227;SRP=0.0;SAP=3.05306;AB=0.0;ABP=0.0;RUN=1;RPP=5.98004;RPPR=0.0;RPL=216.0;RPR=241.0;EPP=12.6323;EPPR=0.0;DPRA=0.0;ODDS=80.4296;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997812;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.815;SOR=0.7645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.9055:119:0:0:122:4685:-421.615,-33.0551,0.0:119:100:119:0,117:4817,352,0:1:.:1:.:.:.:-6.58513e-05	1/1:123.9055:336:0:0:335:12931:-1163.04,-90.7291,0.0:335:100:335:0,335:14447,996,0:.:1:1:.:.:.:-0.00190096
chr4	55260358	.	T	G	9275.375	REJECT	NS=2;DP=251;DPB=296.0;AC=4;AN=4;AF=1.0;RO=0;AO=296;PRO=0.0;PAO=0.0;QR=0;QA=11193;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=189;SAR=107;SRP=0.0;SAP=52.3379;AB=0.0;ABP=0.0;RUN=1;RPP=108.649;RPPR=0.0;RPL=88.0;RPR=208.0;EPP=3.74391;EPPR=0.0;DPRA=0.0;ODDS=59.1888;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.983108;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8152;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.745;SOR=1.6305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.946:87:0:0:88:3310:-297.98,-23.8303,0.0:87:100:87:0,86:3512,258,0:1:.:1:.:.:.:-6.58513e-05	1/1:123.946:207:0:0:208:7883:-709.109,-56.2847,0.0:207:100:207:0,207:8707,602,0:.:1:1:.:.:.:-0.00190096
chr4	55264280	.	C	T	7727.74	REJECT	NS=2;DP=329;DPB=379.0;AC=3;AN=4;AF=0.75;RO=102;AO=277;PRO=0.0;PAO=0.0;QR=3908;QA=10615;PQR=0.0;PQA=0.0;SRF=36;SRR=66;SAF=116;SAR=161;SRP=22.1704;SAP=18.8848;AB=0.634409;ABP=46.79;RUN=1;RPP=5.27584;RPPR=15.2727;RPL=147.0;RPR=130.0;EPP=10.5438;EPPR=3.35092;DPRA=0.0;ODDS=63.3488;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99639;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.488;Dels=0.0;FS=1.083;HaplotypeScore=3.9325;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.144;QD=28.94;ReadPosRankSum=-0.31;SOR=0.7015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3798:-341.853,-27.0861,0.0:99:100:99:0,99:3887,296,0:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:279:102:3908:177:6817:-537.619,0.0,-275.952:177:63:279:102,177:6773,0,3511:.:1:1:.:.:.:-0.00190096
chr4	55424289	.	T	G	9701.61	REJECT	NS=2;DP=373;DPB=429.0;AC=2;AN=4;AF=0.5;RO=108;AO=321;PRO=0.0;PAO=0.0;QR=4125;QA=12163;PQR=0.0;PQA=0.0;SRF=57;SRR=51;SAF=159;SAR=162;SRP=3.73412;SAP=3.07118;AB=0.748252;ABP=232.655;RUN=1;RPP=3.55824;RPPR=3.09072;RPL=165.0;RPR=156.0;EPP=16.7088;EPPR=8.15749;DPRA=0.0;ODDS=250.157;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996885;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.148;Dels=0.0;FS=0.636;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.306;QD=25.195;ReadPosRankSum=1.0125;SOR=0.667;ClippingRankSum=-0.206	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1955:108:52:1951:58:2160:-164.617,0.0,-145.825:58:54:108:48,58:1980,0,1495:1:.:1:.:.:.:-6.58513e-05	0/1:118.1955:318:56:2174:263:10003:-813.331,0.0,-109.172:262:82:318:56,262:10253,0,1493:.:1:1:.:.:.:-0.00190096
chr4	55424655	.	A	G	9743.11	REJECT	NS=2;DP=365;DPB=413.0;AC=2;AN=4;AF=0.5;RO=95;AO=318;PRO=0.0;PAO=0.0;QR=3679;QA=12151;PQR=0.0;PQA=0.0;SRF=38;SRR=57;SAF=167;SAR=151;SRP=11.2619;SAP=4.7584;AB=0.769976;ABP=264.476;RUN=1;RPP=3.44733;RPPR=3.21602;RPL=155.0;RPR=163.0;EPP=6.31531;EPPR=19.6735;DPRA=0.0;ODDS=177.059;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.957895;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.298;Dels=0.0;FS=6.787;HaplotypeScore=5.8338;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.22;QD=25.34;ReadPosRankSum=0.003;SOR=0.4895;ClippingRankSum=0.695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:48:1846:47:1827:-138.716,0.0,-140.414:47:50:94:46,47:1646,0,1565:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:317:47:1833:271:10324:-842.493,0.0,-78.7399:271:85:317:46,271:10638,0,1066:.:1:1:.:.:.:-0.00190096
chr4	55426538	.	T	C	5590.425	REJECT	NS=2;DP=369;DPB=428.0;AC=2;AN=4;AF=0.5;RO=220;AO=207;PRO=0.0;PAO=0.0;QR=8315;QA=7905;PQR=0.0;PQA=0.0;SRF=115;SRR=105;SAF=106;SAR=101;SRP=3.99733;SAP=3.27256;AB=0.483645;ABP=4.00471;RUN=1;RPP=4.27961;RPPR=11.8936;RPL=98.0;RPR=109.0;EPP=3.86001;EPPR=3.16823;DPRA=0.0;ODDS=372.055;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990338;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.964;Dels=0.0;FS=5.0975;HaplotypeScore=8.7767;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.129;QD=17.165;ReadPosRankSum=0.148;SOR=0.962;ClippingRankSum=0.143	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3855:116:56:2154:61:2342:-179.075,0.0,-162.153:60:51:116:56,59:2037,0,1930:1:.:1:.:.:.:-6.58513e-05	0/1:117.3855:311:164:6161:146:5563:-416.441,0.0,-470.24:146:47:310:164,146:5317,0,5946:.:1:1:.:.:.:-0.00190096
chr4	55426561	.	C	T	10392.6	REJECT	NS=2;DP=388;DPB=447.0;AC=2;AN=4;AF=0.5;RO=108;AO=339;PRO=0.0;PAO=0.0;QR=4087;QA=12980;PQR=0.0;PQA=0.0;SRF=51;SRR=57;SAF=167;SAR=172;SRP=3.73412;SAP=3.17044;AB=0.758389;ABP=262.232;RUN=1;RPP=7.67993;RPPR=3.332;RPL=156.0;RPR=183.0;EPP=7.01375;EPPR=16.6021;DPRA=0.0;ODDS=194.156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9941;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3265;Dels=0.0;FS=6.4565;HaplotypeScore=7.7321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.422;QD=25.305;ReadPosRankSum=0.2565;SOR=0.814;ClippingRankSum=0.003	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3785:116:57:2146:60:2298:-175.117,0.0,-161.44:59:50:116:57,58:2049,0,1966:1:.:1:.:.:.:-6.58513e-05	0/1:117.3785:330:51:1941:279:10682:-871.418,0.0,-85.2179:279:85:330:51,279:10980,0,1182:.:1:1:.:.:.:-0.00190096
chr4	55426618	.	A	C	3656.66	PASS	SOMATIC;NS=2;DP=415;DPB=415.0;AC=1;AN=3;AF=0.25;RO=278;AO=135;PRO=0.0;PAO=0.0;QR=10362;QA=5104;PQR=0.0;PQA=0.0;SRF=114;SRR=164;SAF=58;SAR=77;SRP=22.5379;SAP=8.81698;AB=0.421875;ABP=19.9749;RUN=1;RPP=13.0634;RPPR=14.2895;RPL=80.0;RPR=55.0;EPP=4.31318;EPPR=3.2915;DPRA=3.36842;ODDS=59.579;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996403;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.739;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.394;QD=14.88;ReadPosRankSum=1.033;SOR=0.713	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.252:92:94:3467:0:0:0.0,-25.4489,-312.101:0:0:91:88,0:.:0.0:0:.:.:.:0:.:.:0:-6.58513e-05	0/1:119.126:320:184:6895:135:5104:-372.744,0.0,-533.835:135:42:319:177,129:37.0:0.42:2:4790,0,6712:.:1:1:.:.:1:-0.00190096
chr4	55524252	.	G	A	1288.83	REJECT	NS=1;DP=90;DPB=90.0;AC=1;AN=4;AF=0.5;RO=43;AO=47;PRO=0.0;PAO=0.0;QR=1669;QA=1785;PQR=0.0;PQA=0.0;SRF=20;SRR=23;SAF=19;SAR=28;SRP=3.46479;SAP=6.75262;AB=0.522222;ABP=3.39634;RUN=1;RPP=8.60069;RPPR=4.27278;RPL=29.0;RPR=18.0;EPP=19.6891;EPPR=5.48477;DPRA=0.0;ODDS=277.908;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.973;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.388;QD=17.4;ReadPosRankSum=0.806;SOR=0.968;ClippingRankSum=0.973	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:43:1669:47:1785:-136.291,0.0,-125.857:46:52:89:42,46:1559,0,1525:1:.:1:.:.:.:-6.58513e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00190096
chr4	55602765	.	G	C	1940.625	REJECT	NS=2;DP=370;DPB=419.0;AC=2;AN=4;AF=0.5;RO=314;AO=104;PRO=0.0;PAO=0.0;QR=12031;QA=3957;PQR=0.0;PQA=0.0;SRF=152;SRR=162;SAF=46;SAR=58;SRP=3.70185;SAP=6.01695;AB=0.24821;ABP=233.741;RUN=1;RPP=5.09825;RPPR=6.99364;RPL=57.0;RPR=47.0;EPP=9.77527;EPPR=8.43207;DPRA=0.0;ODDS=238.797;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.42;Dels=0.0;FS=1.7525;HaplotypeScore=5.8459;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.682;QD=10.125;ReadPosRankSum=-0.3245;SOR=0.651;ClippingRankSum=0.22	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:50:1883:48:1824:-137.643,0.0,-142.944:47:49:97:49,47:1549,0,1694:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:321:264:10148:56:2133:-105.208,0.0,-826.064:56:18:320:264,56:1443,0,10341:.:1:1:.:.:.:-0.00190096
chr4	55703218	.	A	G	14939.65	REJECT	NS=2;DP=398;DPB=454.0;AC=4;AN=4;AF=1.0;RO=0;AO=453;PRO=0.0;PAO=0.0;QR=0;QA=17208;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=200;SAR=253;SRP=0.0;SAP=16.4753;AB=0.0;ABP=0.0;RUN=1;RPP=7.61689;RPPR=0.0;RPL=242.0;RPR=211.0;EPP=14.5196;EPPR=0.0;DPRA=0.0;ODDS=73.5411;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993377;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7221;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.685;SOR=0.9125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.172:110:0:0:111:4226:-380.338,-30.0634,0.0:110:100:110:0,109:4471,327,0:1:.:1:.:.:.:-6.58513e-05	1/1:125.172:342:0:0:342:12982:-1167.65,-92.5973,0.0:342:100:342:0,342:14500,1011,0:.:1:1:.:.:.:-0.00190096
chr4	55703257	.	C	T	8887.88	REJECT	NS=2;DP=345;DPB=394.0;AC=2;AN=4;AF=0.5;RO=96;AO=298;PRO=0.0;PAO=0.0;QR=3697;QA=11219;PQR=0.0;PQA=0.0;SRF=40;SRR=56;SAF=103;SAR=195;SRP=8.80089;SAP=64.6859;AB=0.756345;ABP=227.895;RUN=1;RPP=9.56844;RPPR=4.45795;RPL=164.0;RPR=134.0;EPP=8.72317;EPPR=3.37221;DPRA=0.0;ODDS=214.207;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0671;MQMR=60.1042;PAIRED=0.996644;PAIREDR=0.979167;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1375;Dels=0.0;FS=4.99;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.184;QD=24.725;ReadPosRankSum=0.329;SOR=1.139;ClippingRankSum=-1.378	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:46:1758:50:1908:-145.735,0.0,-132.238:49:52:95:45,49:1689,0,1674:1:.:1:.:.:.:-6.58513e-05	0/1:129.501:297:50:1939:248:9311:-756.833,0.0,-93.7291:248:83:297:49,248:9522,0,1257:.:1:1:.:.:.:-0.00190096
chr4	55704161	.	C	T	14464.5	REJECT	NS=2;DP=394;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=456;PRO=0.0;PAO=0.0;QR=0;QA=17117;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=248;SAR=208;SRP=0.0;SAP=10.6295;AB=0.0;ABP=0.0;RUN=1;RPP=19.0297;RPPR=0.0;RPL=257.0;RPR=199.0;EPP=52.5542;EPPR=0.0;DPRA=0.0;ODDS=81.6503;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.955;SOR=0.866	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.352:124:0:0:124:4735:-426.111,-33.5852,0.0:124:100:124:0,124:4796,371,0:1:.:1:.:.:.:-6.58513e-05	1/1:127.352:332:0:0:332:12382:-1113.64,-89.8096,0.0:332:100:332:0,332:13676,957,0:.:1:1:.:.:.:-0.00190096
chr4	55706827	.	T	C	13320.65	REJECT	NS=2;DP=356;DPB=408.0;AC=4;AN=4;AF=1.0;RO=0;AO=408;PRO=0.0;PAO=0.0;QR=0;QA=15441;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=216;SRP=0.0;SAP=6.07591;AB=0.0;ABP=0.0;RUN=1;RPP=7.80031;RPPR=0.0;RPL=189.0;RPR=219.0;EPP=4.7347;EPPR=0.0;DPRA=0.0;ODDS=68.6004;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995098;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.925;SOR=0.9015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:103:3919:-352.771,-27.9177,0.0:100:100:100:0,98:4057,295,0:1:.:1:.:.:.:-6.58513e-05	1/1:129.501:304:0:0:305:11522:-1036.34,-82.5579,0.0:304:100:304:0,304:12830,897,0:.:1:1:.:.:.:-0.00190096
chr4	55946081	.	A	G	7791.145	REJECT	NS=2;DP=207;DPB=240.0;AC=4;AN=4;AF=1.0;RO=1;AO=239;PRO=0.0;PAO=0.0;QR=27;QA=9182;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=156;SAR=83;SRP=5.18177;SAP=51.4278;AB=0.0;ABP=0.0;RUN=1;RPP=68.6542;RPPR=5.18177;RPL=77.0;RPR=162.0;EPP=3.09207;EPPR=5.18177;DPRA=0.0;ODDS=44.2728;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991632;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.673;Dels=0.0;FS=2.206;HaplotypeScore=6.8076;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.356;QD=31.265;ReadPosRankSum=0.505;SOR=1.464	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:63:0:0:64:2445:-220.217,-17.3524,0.0:63:100:63:0,63:2616,189,0:1:.:1:.:.:.:-6.58513e-05	1/1:129.501:175:1:27:175:6737:-603.683,-45.2421,0.0:174:99:175:1,174:7517,492,0:.:1:1:.:.:.:-0.00190096
chr4	55948108	.	A	G	9158.51	REJECT	NS=2;DP=243;DPB=277.0;AC=4;AN=4;AF=1.0;RO=0;AO=276;PRO=0.0;PAO=0.0;QR=0;QA=10601;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=84;SRP=0.0;SAP=94.7786;AB=0.0;ABP=0.0;RUN=1;RPP=35.2362;RPPR=0.0;RPL=106.0;RPR=170.0;EPP=24.2844;EPPR=0.0;DPRA=0.0;ODDS=46.7816;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996377;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.36;SOR=1.91	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:68:0:0:68:2602:-234.34,-18.4419,0.0:68:100:68:0,68:2867,205,0:1:.:1:.:.:.:-6.58513e-05	1/1:129.501:209:0:0:208:7999:-719.605,-56.3495,0.0:208:100:208:0,208:8993,623,0:.:1:1:.:.:.:-0.00190096
chr4	55968053	.	A	C	6770.26	REJECT	NS=2;DP=259;DPB=297.0;AC=2;AN=4;AF=0.5;RO=68;AO=229;PRO=0.0;PAO=0.0;QR=2493;QA=8650;PQR=0.0;PQA=0.0;SRF=52;SRR=16;SAF=170;SAR=59;SRP=44.396;SAP=119.843;AB=0.771044;ABP=192.528;RUN=1;RPP=27.6741;RPPR=28.0461;RPL=89.0;RPR=140.0;EPP=4.15767;EPPR=7.60871;DPRA=0.0;ODDS=78.4305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0505;Dels=0.0;FS=2.2715;HaplotypeScore=13.7223;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.5365;QD=25.59;ReadPosRankSum=-0.3665;SOR=0.6175;ClippingRankSum=0.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.749:75:39:1413:37:1423:-107.56,0.0,-106.638:36:49:75:38,36:1341,0,1238:1:.:1:.:.:.:-6.58513e-05	0/1:117.749:221:29:1080:192:7227:-590.325,0.0,-37.3183:192:87:221:29,192:7451,0,544:.:1:1:.:.:.:-0.00190096
chr4	58507747	.	C	T	2298.61	PASS	SOMATIC;NS=2;DP=432;DPB=432.0;AC=1;AN=3;AF=0.25;RO=341;AO=91;PRO=0.0;PAO=0.0;QR=13170;QA=3564;PQR=0.0;PQA=0.0;SRF=142;SRR=199;SAF=38;SAR=53;SRP=23.6998;SAP=8.37933;AB=0.293548;ABP=117.776;RUN=1;RPP=4.94315;RPPR=4.44309;RPL=50.0;RPR=41.0;EPP=15.6335;EPPR=23.6998;DPRA=2.54098;ODDS=77.1192;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991202;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.92;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1;QD=9.86;ReadPosRankSum=0.496;SOR=0.678	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.375:117:122:4744:0:0:0.0,-33.0665,-426.924:0:0:117:113,0:.:0.0:0:.:.:.:0:.:.:0:-6.58513e-05	0/1:120.6875:309:219:8426:91:3564:-236.96,0.0,-673.892:91:29:309:208,86:39.0:0.292:2:3074,0,8475:.:1:1:.:.:1:-0.00190096
chr4	64502837	.	T	C	7711.945	REJECT	NS=2;DP=208;DPB=242.0;AC=4;AN=4;AF=1.0;RO=0;AO=241;PRO=0.0;PAO=0.0;QR=0;QA=9179;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=191;SAR=50;SRP=0.0;SAP=182.143;AB=0.0;ABP=0.0;RUN=1;RPP=87.7878;RPPR=0.0;RPL=72.0;RPR=169.0;EPP=5.61426;EPPR=0.0;DPRA=0.0;ODDS=46.1023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995851;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9638;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.135;SOR=2.614	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.322:67:0:0:67:2483:-223.619,-18.1469,0.0:66:100:66:0,66:2768,198,0:1:.:1:.:.:.:-6.58513e-05	1/1:120.322:174:0:0:174:6696:-602.424,-47.1289,0.0:174:100:174:0,174:7510,518,0:.:1:1:.:.:.:-0.00190096
chr4	66197804	.	C	T	8179.02	REJECT	NS=2;DP=330;DPB=374.0;AC=2;AN=4;AF=0.5;RO=91;AO=283;PRO=0.0;PAO=0.0;QR=3314;QA=10379;PQR=0.0;PQA=0.0;SRF=28;SRR=63;SAF=92;SAR=191;SRP=32.2417;SAP=78.2138;AB=0.756684;ABP=217.045;RUN=1;RPP=4.73674;RPPR=11.6246;RPL=149.0;RPR=134.0;EPP=11.3662;EPPR=20.4059;DPRA=0.0;ODDS=147.85;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992933;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.973;Dels=0.0;FS=0.9435;HaplotypeScore=7.7987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.18;QD=22.78;ReadPosRankSum=-1.413;SOR=0.5935;ClippingRankSum=-1.027	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.1505:86:47:1701:40:1433:-105.842,0.0,-129.594:39:46:86:46,39:1249,0,1525:1:.:1:.:.:.:-6.58513e-05	0/1:120.1505:286:44:1613:243:8946:-726.994,0.0,-67.5057:242:85:286:44,242:8952,0,972:.:1:1:.:.:.:-0.00190096
chr4	66218728	.	C	T	10004.0	REJECT	NS=2;DP=266;DPB=296.0;AC=4;AN=4;AF=1.0;RO=0;AO=296;PRO=0.0;PAO=0.0;QR=0;QA=11320;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=110;SRP=0.0;SAP=45.3834;AB=0.0;ABP=0.0;RUN=1;RPP=79.3346;RPPR=0.0;RPL=97.0;RPR=199.0;EPP=24.4022;EPPR=0.0;DPRA=0.0;ODDS=41.7828;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993243;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.54;SOR=1.365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:59:0:0:60:2277:-205.114,-16.271,0.0:59:100:59:0,59:2381,177,0:1:.:1:.:.:.:-6.58513e-05	1/1:129.501:236:0:0:236:9043:-813.465,-63.9175,0.0:236:100:236:0,236:10116,701,0:.:1:1:.:.:.:-0.00190096
chr4	66280171	.	C	T	10683.95	REJECT	NS=2;DP=283;DPB=323.0;AC=4;AN=4;AF=1.0;RO=0;AO=323;PRO=0.0;PAO=0.0;QR=0;QA=12440;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=111;SAR=212;SRP=0.0;SAP=71.5898;AB=0.0;ABP=0.0;RUN=1;RPP=111.443;RPPR=0.0;RPL=225.0;RPR=98.0;EPP=3.33972;EPPR=0.0;DPRA=0.0;ODDS=52.4128;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990712;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.05;SOR=1.534	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:76:0:0:77:3017:-271.655,-20.8875,0.0:76:100:76:0,75:3098,226,0:1:.:1:.:.:.:-6.58513e-05	1/1:129.501:245:0:0:246:9423:-847.608,-66.6178,0.0:245:100:245:0,244:10425,722,0:.:1:1:.:.:.:-0.00190096
chr4	66509085	.	T	G	2306.75	PASS	SOMATIC;NS=2;DP=376;DPB=376.0;AC=1;AN=3;AF=0.25;RO=283;AO=92;PRO=0.0;PAO=0.0;QR=10609;QA=3518;PQR=0.0;PQA=0.0;SRF=170;SRR=113;SAF=51;SAR=41;SRP=27.94;SAP=5.3706;AB=0.316151;ABP=88.4439;RUN=1;RPP=6.40913;RPPR=43.9;RPL=40.0;RPR=52.0;EPP=18.9659;EPPR=7.80595;DPRA=3.42353;ODDS=54.0017;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.9293;PAIRED=0.98913;PAIREDR=0.996466;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.81;Dels=0.0;FS=5.176;HaplotypeScore=4.8855;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.042;QD=10.29;ReadPosRankSum=-0.516;SOR=0.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.367:83:85:3205:0:0:0.0,-23.0267,-288.548:0:0:83:82,0:.:0.0:0:.:.:.:0:.:.:0:-6.58513e-05	0/1:120.1835:290:198:7404:92:3518:-237.964,0.0,-587.463:91:31:289:191,88:38.0:0.315:2:3013,0,7375:.:1:1:.:.:1:-0.00190096
chr4	90032048	.	T	C	3647.34	REJECT	NS=1;DP=109;DPB=109.0;AC=2;AN=4;AF=1.0;RO=0;AO=109;PRO=0.0;PAO=0.0;QR=0;QA=4115;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=47;SAR=62;SRP=0.0;SAP=7.4927;AB=0.0;ABP=0.0;RUN=1;RPP=15.4614;RPPR=0.0;RPL=67.0;RPR=42.0;EPP=8.76769;EPPR=0.0;DPRA=0.0;ODDS=72.5463;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.15;SOR=0.981	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:109:4115:-370.35,-29.5064,0.0:108:100:108:0,108:4186,323,0:1:.:1:.:.:.:-6.58513e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00190096
chr4	91530823	.	T	C	2779.96	PASS	SOMATIC;NS=2;DP=401;DPB=401.0;AC=1;AN=3;AF=0.25;RO=295;AO=106;PRO=0.0;PAO=0.0;QR=11466;QA=4094;PQR=0.0;PQA=0.0;SRF=162;SRR=133;SAF=62;SAR=44;SRP=9.20084;SAP=9.64763;AB=0.345277;ABP=66.8459;RUN=1;RPP=5.05886;RPPR=19.2706;RPL=48.0;RPR=58.0;EPP=12.9253;EPPR=8.37641;DPRA=3.26596;ODDS=59.6343;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.634;Dels=0.0;FS=0.441;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.051;QD=11.87;ReadPosRankSum=1.024;SOR=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.388:92:94:3648:0:0:0.0,-25.4729,-328.366:0:0:92:90,0:.:0.0:0:.:.:.:0:.:.:0:-6.58513e-05	0/1:119.694:307:201:7818:106:4094:-285.06,0.0,-620.033:106:35:307:194,100:39.0:0.335:2:3672,0,7838:.:1:1:.:.:1:-0.00190096
chr4	99035867	.	G	GCA	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:12,0:12:1.66667,0.0:60.0,0.0:37.9174,0.0:0.0,0.0:0,0:0,0:12,0,0,0:0:0:12:.:.:.:.:0:.:-6.58513e-05	0/1:22,11:33:1.5,2.09091:60.0,60.0:36.8061,39.2273:0.0181818,0.1:81,2:17,2:21,1,11,0:11:33:33:.:.:.:.:1:.:-0.00190096
chr4	106196951	.	A	G	6055.43	REJECT	NS=2;DP=376;DPB=435.0;AC=2;AN=4;AF=0.5;RO=215;AO=220;PRO=0.0;PAO=0.0;QR=8162;QA=8427;PQR=0.0;PQA=0.0;SRF=100;SRR=115;SAF=110;SAR=110;SRP=5.28277;SAP=3.0103;AB=0.505747;ABP=3.1351;RUN=1;RPP=9.68264;RPPR=7.46434;RPL=97.0;RPR=123.0;EPP=4.94488;EPPR=5.28277;DPRA=0.0;ODDS=360.776;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.735;Dels=0.0;FS=1.5035;HaplotypeScore=5.8212;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5225;QD=18.185;ReadPosRankSum=0.419;SOR=0.628;ClippingRankSum=0.674	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.039:117:55:2098:62:2376:-182.134,0.0,-157.117:62:53:117:55,62:2158,0,1878:1:.:1:.:.:.:-0.000279671	0/1:118.039:318:160:6064:158:6051:-458.144,0.0,-459.335:158:50:318:160,158:5806,0,5809:.:1:1:.:.:.:-0.00190096
chr4	108999366	.	G	A	8030.95	REJECT	NS=2;DP=215;DPB=252.0;AC=4;AN=4;AF=1.0;RO=0;AO=252;PRO=0.0;PAO=0.0;QR=0;QA=9617;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=178;SAR=74;SRP=0.0;SAP=96.2113;AB=0.0;ABP=0.0;RUN=1;RPP=85.7675;RPPR=0.0;RPL=77.0;RPR=175.0;EPP=7.18091;EPPR=0.0;DPRA=0.0;ODDS=50.4697;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996032;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.855;SOR=1.8465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.952:74:0:0:74:2786:-250.857,-20.0436,0.0:74:100:74:0,74:2978,222,0:1:.:1:.:.:.:-0.000279671	1/1:123.952:178:0:0:178:6831:-614.596,-48.2317,0.0:178:100:178:0,178:7659,533,0:.:1:1:.:.:.:-0.00190096
chr4	109086280	.	C	T	5822.860000000001	REJECT	NS=2;DP=359;DPB=407.0;AC=2;AN=4;AF=0.5;RO=198;AO=208;PRO=0.0;PAO=0.0;QR=7543;QA=7969;PQR=0.0;PQA=0.0;SRF=91;SRR=107;SAF=119;SAR=89;SRP=5.81786;SAP=12.4061;AB=0.511057;ABP=3.44246;RUN=1;RPP=3.67845;RPPR=3.71219;RPL=108.0;RPR=100.0;EPP=21.4261;EPPR=34.9902;DPRA=0.0;ODDS=273.601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1625;Dels=0.0;FS=10.6425;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.276;QD=18.67;ReadPosRankSum=0.7275;SOR=1.1575;ClippingRankSum=0.545	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:43:1624:52:2029:-157.275,0.0,-120.432:51:54:93:42,50:1834,0,1429:1:.:1:.:.:.:-0.000279671	0/1:129.501:312:155:5919:156:5940:-450.443,0.0,-448.171:156:50:311:155,156:5686,0,5695:.:1:1:.:.:.:-0.00190096
chr4	111009123	.	C	T	5487.545	REJECT	NS=2;DP=343;DPB=399.0;AC=2;AN=4;AF=0.5;RO=206;AO=193;PRO=0.0;PAO=0.0;QR=7875;QA=7444;PQR=0.0;PQA=0.0;SRF=99;SRR=107;SAF=90;SAR=103;SRP=3.68493;SAP=4.91174;AB=0.483709;ABP=3.93005;RUN=1;RPP=3.11156;RPPR=5.07636;RPL=98.0;RPR=95.0;EPP=12.4725;EPPR=13.8044;DPRA=0.0;ODDS=307.768;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7345;Dels=0.0;FS=1.996;HaplotypeScore=8.8649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.698;QD=16.655;ReadPosRankSum=-0.015;SOR=0.8555;ClippingRankSum=0.009	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4475:108:62:2419:47:1827:-134.886,0.0,-188.159:47:43:108:60,47:1574,0,2101:1:.:1:.:.:.:-0.000279671	0/1:118.4475:289:144:5456:146:5617:-426.715,0.0,-412.209:146:50:289:142,146:5459,0,5101:.:1:1:.:.:.:-0.00190096
chr4	139510390	.	T	A	8746.05	REJECT	NS=2;DP=328;DPB=370.0;AC=2;AN=4;AF=0.5;RO=80;AO=290;PRO=0.0;PAO=0.0;QR=3027;QA=10943;PQR=0.0;PQA=0.0;SRF=42;SRR=38;SAF=160;SAR=130;SRP=3.44459;SAP=9.74935;AB=0.783784;ABP=261.826;RUN=1;RPP=20.2623;RPPR=13.8677;RPL=121.0;RPR=169.0;EPP=12.7145;EPPR=9.95901;DPRA=0.0;ODDS=180.414;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996552;PAIREDR=0.9625;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.155;Dels=0.0;FS=11.486;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.166;QD=26.555;ReadPosRankSum=1.681;SOR=0.7455;ClippingRankSum=0.188	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:34:1273:48:1781:-138.126,0.0,-92.4207:47:59:80:32,46:1635,0,992:1:.:1:.:.:.:-0.000279671	0/1:129.501:287:46:1754:242:9162:-746.138,0.0,-79.8111:242:84:287:45,242:9358,0,1047:.:1:1:.:.:.:-0.00190096
chr4	142849228	.	T	G	13677.55	REJECT	NS=2;DP=367;DPB=420.0;AC=4;AN=4;AF=1.0;RO=0;AO=420;PRO=0.0;PAO=0.0;QR=0;QA=15782;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=196;SAR=224;SRP=0.0;SAP=7.06372;AB=0.0;ABP=0.0;RUN=1;RPP=107.262;RPPR=0.0;RPL=281.0;RPR=139.0;EPP=48.6939;EPPR=0.0;DPRA=0.0;ODDS=69.7695;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9976;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8754;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.05;SOR=0.792	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.858:105:0:0:105:3839:-345.553,-28.4255,0.0:105:100:105:0,105:4085,314,0:1:.:1:.:.:.:-0.000279671	1/1:121.858:315:0:0:315:11943:-1073.81,-84.8859,0.0:315:100:315:0,315:13388,930,0:.:1:1:.:.:.:-0.00190096
chr4	142849240	.	G	A	12035.099999999999	REJECT	NS=2;DP=316;DPB=360.0;AC=4;AN=4;AF=1.0;RO=0;AO=360;PRO=0.0;PAO=0.0;QR=0;QA=13907;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=203;SRP=0.0;SAP=15.7737;AB=0.0;ABP=0.0;RUN=1;RPP=101.836;RPPR=0.0;RPL=244.0;RPR=116.0;EPP=86.998;EPPR=0.0;DPRA=0.0;ODDS=58.6486;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9917;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7224;MLEAC=2;MLEAF=1.0;MQ=59.995;QD=31.785;SOR=0.9585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:87:3384:-304.66,-23.5957,0.0:87:100:87:0,87:3628,262,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:273:0:0:273:10523:-946.495,-73.927,0.0:273:100:273:0,273:11827,816,0:.:1:1:.:.:.:-0.00190096
chr4	142849725	.	A	G	6722.45	REJECT	NS=2;DP=184;DPB=203.0;AC=4;AN=4;AF=1.0;RO=0;AO=203;PRO=0.0;PAO=0.0;QR=0;QA=7799;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=142;SAR=61;SRP=0.0;SAP=73.1927;AB=0.0;ABP=0.0;RUN=1;RPP=175.541;RPPR=0.0;RPL=38.0;RPR=165.0;EPP=6.10171;EPPR=0.0;DPRA=0.0;ODDS=28.0622;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995074;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.77;SOR=1.769	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:110.421:38:0:0:38:1428:-128.773,-10.3122,0.0:38:100:38:0,38:1551,114,0:1:.:1:.:.:.:-0.000279671	1/1:121.229:165:0:0:165:6371:-573.214,-44.7036,0.0:165:100:165:0,165:7117,491,0:.:1:1:.:.:.:-0.00190096
chr4	142851087	.	G	A	8978.78	REJECT	NS=2;DP=242;DPB=274.0;AC=4;AN=4;AF=1.0;RO=0;AO=274;PRO=0.0;PAO=0.0;QR=0;QA=10435;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=43;SRP=0.0;SAP=283.114;AB=0.0;ABP=0.0;RUN=1;RPP=24.4397;RPPR=0.0;RPL=111.0;RPR=163.0;EPP=10.1429;EPPR=0.0;DPRA=0.0;ODDS=44.1871;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.8029;MQMR=0.0;PAIRED=0.99635;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=58.12;QD=28.23;SOR=3.5635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:63:0:0:64:2348:-210.707,-17.3152,0.0:63:100:63:0,62:2529,186,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:210:0:0:210:8087:-724.618,-56.8895,0.0:210:100:210:0,210:9047,626,0:.:1:1:.:.:.:-0.00190096
chr4	142851140	.	A	G	13907.95	REJECT	NS=2;DP=374;DPB=426.0;AC=4;AN=4;AF=1.0;RO=0;AO=425;PRO=0.0;PAO=0.0;QR=0;QA=16030;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=265;SAR=160;SRP=0.0;SAP=59.3408;AB=0.0;ABP=0.0;RUN=1;RPP=39.9253;RPPR=0.0;RPL=170.0;RPR=255.0;EPP=12.4575;EPPR=0.0;DPRA=0.0;ODDS=67.8921;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.76;MQMR=0.0;PAIRED=0.992941;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8659;MLEAC=2;MLEAF=1.0;MQ=59.82;QD=32.735;SOR=1.345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:102:3790:-341.116,-27.6101,0.0:102:100:102:0,102:4203,306,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:323:0:0:323:12240:-1100.66,-87.435,0.0:322:100:322:0,322:13572,945,0:.:1:1:.:.:.:-0.00190096
chr4	142853001	.	C	A	12577.45	REJECT	NS=2;DP=331;DPB=376.0;AC=4;AN=4;AF=1.0;RO=0;AO=376;PRO=0.0;PAO=0.0;QR=0;QA=14466;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=151;SRP=0.0;SAP=34.6353;AB=0.0;ABP=0.0;RUN=1;RPP=6.33681;RPPR=0.0;RPL=200.0;RPR=176.0;EPP=22.438;EPPR=0.0;DPRA=0.0;ODDS=59.8933;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992021;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.955;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.16;SOR=1.0455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:89:3441:-309.785,-24.1363,0.0:87:100:87:0,86:3402,259,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:286:0:0:287:11025:-991.639,-77.7072,0.0:286:100:286:0,286:12265,846,0:.:1:1:.:.:.:-0.00190096
chr4	142853017	.	A	G	12433.349999999999	REJECT	NS=2;DP=330;DPB=374.0;AC=4;AN=4;AF=1.0;RO=1;AO=373;PRO=0.0;PAO=0.0;QR=34;QA=14316;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=211;SAR=162;SRP=5.18177;SAP=16.9881;AB=0.0;ABP=0.0;RUN=1;RPP=7.9063;RPPR=5.18177;RPL=201.0;RPR=172.0;EPP=41.2061;EPPR=5.18177;DPRA=0.0;ODDS=58.6448;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989276;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.538;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.296;QD=27.125;ReadPosRankSum=0.581;SOR=0.56	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:87:3340:-300.709,-23.5941,0.0:86:100:86:0,85:3366,256,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:286:1:34:286:10976:-984.156,-74.6379,0.0:285:100:286:1,285:12136,804,0:.:1:1:.:.:.:-0.00190096
chr4	142858190	.	A	G	13895.8	REJECT	NS=2;DP=360;DPB=405.0;AC=4;AN=4;AF=1.0;RO=1;AO=404;PRO=0.0;PAO=0.0;QR=40;QA=15763;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=167;SAR=237;SRP=5.18177;SAP=29.3475;AB=0.0;ABP=0.0;RUN=1;RPP=19.8661;RPPR=5.18177;RPL=230.0;RPR=174.0;EPP=14.3837;EPPR=5.18177;DPRA=0.0;ODDS=59.2701;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.03;Dels=0.0;FS=0.0;HaplotypeScore=3.9645;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.406;QD=30.375;ReadPosRankSum=0.855;SOR=0.7875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:88:3416:-307.531,-23.8656,0.0:87:100:87:0,86:3703,259,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:316:1:40:316:12347:-1106.92,-82.2887,0.0:315:100:316:1,315:13763,903,0:.:1:1:.:.:.:-0.00190096
chr4	143007419	.	A	G	1866.44	PASS	SOMATIC;NS=2;DP=277;DPB=277.0;AC=1;AN=3;AF=0.25;RO=204;AO=73;PRO=0.0;PAO=0.0;QR=7791;QA=2806;PQR=0.0;PQA=0.0;SRF=43;SRR=161;SAF=19;SAR=54;SRP=151.224;SAP=39.4494;AB=0.350962;ABP=43.1408;RUN=1;RPP=5.41974;RPPR=16.8055;RPL=41.0;RPR=32.0;EPP=8.03741;EPPR=3.05288;DPRA=3.01449;ODDS=44.0831;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985294;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.763;Dels=0.0;FS=4.183;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.261;QD=12.08;ReadPosRankSum=-0.637;SOR=0.405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.898:69:69:2651:0:0:0.0,-18.7191,-238.758:0:0:69:69,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:119.949:208:135:5140:73:2806:-196.092,0.0,-406.062:73:35:208:130,69:38.0:0.344:2:2540,0,5142:.:1:1:.:.:1:-0.00190096
chr4	143043340	.	A	G	1779.085	REJECT	NS=2;DP=385;DPB=437.0;AC=2;AN=4;AF=0.5;RO=344;AO=93;PRO=0.0;PAO=0.0;QR=13168;QA=3480;PQR=0.0;PQA=0.0;SRF=172;SRR=172;SAF=40;SAR=53;SRP=3.0103;SAP=6.95631;AB=0.212815;ABP=316.065;RUN=1;RPP=3.03365;RPPR=11.1912;RPL=46.0;RPR=47.0;EPP=3.03365;EPPR=6.64625;DPRA=0.0;ODDS=125.131;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991279;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3;Dels=0.0;FS=4.1745;HaplotypeScore=5.7904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7455;QD=9.43;ReadPosRankSum=-0.727;SOR=0.925;ClippingRankSum=-0.173	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:52:2019:50:1857:-139.511,0.0,-154.097:50:49:101:51,50:1698,0,1766:1:.:1:.:.:.:-0.000279671	0/1:129.501:334:292:11149:43:1623:-55.2764,0.0,-912.067:43:13:334:291,43:806,0,11391:.:1:1:.:.:.:-0.00190096
chr4	143043404	.	C	T	5092.535	REJECT	NS=2;DP=289;DPB=342.0;AC=2;AN=4;AF=0.5;RO=157;AO=185;PRO=0.0;PAO=0.0;QR=5951;QA=7142;PQR=0.0;PQA=0.0;SRF=53;SRR=104;SAF=70;SAR=115;SRP=38.9848;SAP=26.7791;AB=0.540936;ABP=7.98818;RUN=1;RPP=49.5972;RPPR=6.12228;RPL=124.0;RPR=61.0;EPP=4.99397;EPPR=8.0033;DPRA=0.0;ODDS=323.031;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994595;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.679;Dels=0.0;FS=2.7825;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3175;QD=19.02;ReadPosRankSum=0.6865;SOR=0.4985;ClippingRankSum=-2.016	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0985:105:50:1905:55:2124:-162.731,0.0,-143.003:55:52:105:50,56:1896,0,1645:1:.:1:.:.:.:-0.000279671	0/1:118.0985:236:107:4046:130:5018:-387.208,0.0,-299.773:129:55:236:107,129:4847,0,3784:.:1:1:.:.:.:-0.00190096
chr4	143044427	.	T	C	801.4965	REJECT	NS=2;DP=259;DPB=289.0;AC=2;AN=4;AF=0.5;RO=236;AO=53;PRO=0.0;PAO=0.0;QR=9172;QA=1982;PQR=0.0;PQA=0.0;SRF=192;SRR=44;SAF=45;SAR=8;SRP=204.552;SAP=59.0998;AB=0.183391;ABP=254.638;RUN=1;RPP=12.2288;RPPR=67.9336;RPL=19.0;RPR=34.0;EPP=3.05127;EPPR=8.31016;DPRA=0.0;ODDS=82.6922;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3555;Dels=0.0;FS=2.796;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6045;QD=7.215;ReadPosRankSum=0.909;SOR=0.6925;ClippingRankSum=1.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:60:38:1472:22:838:-59.2049,0.0,-116.332:22:37:60:38,22:752,0,1471:1:.:1:.:.:.:-0.000279671	0/1:129.501:229:198:7700:31:1144:-40.8706,0.0,-630.629:31:14:229:198,31:570,0,7944:.:1:1:.:.:.:-0.00190096
chr4	143067054	.	G	A	5330.205	REJECT	NS=2;DP=343;DPB=395.0;AC=2;AN=4;AF=0.5;RO=204;AO=191;PRO=0.0;PAO=0.0;QR=7755;QA=7376;PQR=0.0;PQA=0.0;SRF=117;SRR=87;SAF=100;SAR=91;SRP=12.5903;SAP=3.93119;AB=0.483544;ABP=3.93936;RUN=1;RPP=28.1243;RPPR=4.5431;RPL=119.0;RPR=72.0;EPP=3.93119;EPPR=21.7871;DPRA=0.0;ODDS=341.488;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994764;PAIREDR=0.97549;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1055;Dels=0.0;FS=3.471;HaplotypeScore=8.8563;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3225;QD=17.925;ReadPosRankSum=1.1665;SOR=0.6205;ClippingRankSum=0.361	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:52:1978:52:2008:-152.561,0.0,-149.851:51:51:101:48,51:1832,0,1742:1:.:1:.:.:.:-0.000279671	0/1:129.501:291:152:5777:139:5368:-404.028,0.0,-440.826:139:48:291:152,139:5210,0,5595:.:1:1:.:.:.:-0.00190096
chr4	143130034	.	A	T	7755.34	REJECT	NS=2;DP=293;DPB=323.0;AC=2;AN=4;AF=0.5;RO=57;AO=264;PRO=0.0;PAO=0.0;QR=2004;QA=9797;PQR=0.0;PQA=0.0;SRF=44;SRR=13;SAF=180;SAR=84;SRP=39.6206;SAP=78.8144;AB=0.817337;ABP=285.537;RUN=1;RPP=38.8396;RPPR=16.763;RPL=99.0;RPR=165.0;EPP=17.5197;EPPR=3.9627;DPRA=0.0;ODDS=42.1929;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.949;Dels=0.0;FS=7.179;HaplotypeScore=34.8781;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9235;QD=26.695;ReadPosRankSum=0.8;SOR=0.3545;ClippingRankSum=0.322	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:28:987:31:1158:-88.3378,0.0,-72.9257:30:54:56:24,30:1093,0,790:1:.:1:.:.:.:-0.000279671	0/1:129.501:264:29:1017:233:8639:-706.211,0.0,-20.6094:233:89:262:29,233:9012,0,305:.:1:1:.:.:.:-0.00190096
chr4	143181731	.	TA	T	2623.08	REJECT	NS=2;DP=209;DPB=250.542;AC=1;AN=3;AF=0.0;RO=32;AO=11;PRO=21.9048;PAO=10.5714;QR=1186;QA=321;PQR=799.481;PQA=377.814;SRF=6;SRR=26;SAF=3;SAR=8;SRP=30.1537;SAP=7.94546;AB=0.0526316;ABP=366.332;RUN=1;RPP=3.20771;RPPR=3.0103;RPL=6.0;RPR=5.0;EPP=7.94546;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=6;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.3455:49:20:762:6:181:-18.6116,-3.61288,-113.72:6:13:46:.:.:1:.:.:.:-0.000279671	0/0:160.002:160:12:424:5:140:-259.439,-249.592,-387.887:5:4:137:.:.:.:.:.:.:-0.00190096
chr4	143181731	.	TAA	T	2623.08	REJECT	NS=2;DP=209;DPB=250.542;AC=1;AN=3;AF=0.0;RO=32;AO=3;PRO=21.9048;PAO=8.57143;QR=1186;QA=92;PQR=799.481;PQA=314.714;SRF=6;SRR=26;SAF=0;SAR=3;SRP=30.1537;SAP=9.52472;AB=0.0612245;ABP=84.9501;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=6;MEANALT=9.0;LEN=2;MQM=53.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.3455:49:20:762:3:92:-18.6116,-17.5756,-129.298:3:7:46:.:.:1:.:.:.:-0.000279671	0/0:160.002:160:12:424:0:0:-259.439,-278.949,-497.458:0:0:137:.:.:.:.:.:.:-0.00190096
chr4	143181745	.	AAAT	A	2623.08	PASS	SOMATIC;NS=2;DP=209;DPB=250.542;AC=1;AN=3;AF=0.0;RO=32;AO=11;PRO=21.9048;PAO=7.57143;QR=1186;QA=376;PQR=799.481;PQA=274.714;SRF=6;SRR=26;SAF=6;SAR=5;SRP=30.1537;SAP=3.20771;AB=0.0526316;ABP=366.332;RUN=1;RPP=12.6832;RPPR=3.0103;RPL=9.0;RPR=2.0;EPP=7.94546;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=del;CIGAR=15M3D6M;NUMALT=6;MEANALT=15.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.3455:49:20:762:1:34:-18.6116,-25.5849,-138.112:1:2:46:.:.:1:.:.:.:-0.000279671	0/0:160.002:160:12:424:10:342:-259.439,-250.878,-466.678:10:7:137:.:.:.:.:.:.:-0.00190096
chr4	143181746	.	AAT	A	2623.08	REJECT	NS=2;DP=209;DPB=250.542;AC=1;AN=3;AF=0.0;RO=32;AO=17;PRO=21.9048;PAO=10.5714;QR=1186;QA=625;PQR=799.481;PQA=377.814;SRF=6;SRR=26;SAF=5;SAR=12;SRP=30.1537;SAP=9.26925;AB=0.0813397;ABP=321.199;RUN=1;RPP=9.26925;RPPR=3.0103;RPL=12.0;RPR=5.0;EPP=4.1599;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=del;CIGAR=16M2D6M;NUMALT=6;MEANALT=15.0;LEN=2;MQM=59.5882;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.3455:49:20:762:3:117:-18.6116,-8.56636,-119.467:3:7:46:.:.:1:.:.:.:-0.000279671	0/0:160.002:160:12:424:14:508:-259.439,-218.933,-354.759:14:10:137:.:.:.:.:.:.:-0.00190096
chr4	143181747	.	AT	A	2623.08	REJECT	NS=2;DP=209;DPB=250.542;AC=2;AN=3;AF=0.5;RO=32;AO=66;PRO=21.9048;PAO=21.9048;QR=1186;QA=2322;PQR=799.481;PQA=798.481;SRF=6;SRR=26;SAF=13;SAR=53;SRP=30.1537;SAP=55.6521;AB=0.315789;ABP=64.6115;RUN=1;RPP=3.1419;RPPR=3.0103;RPL=32.0;RPR=34.0;EPP=16.1707;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=del;CIGAR=17M1D6M;NUMALT=6;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984848;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:63.3455:49:20:762:9:297:-18.6116,0.0,-63.844:9:20:46:.:.:1:.:.:.:-0.000279671	./1:160.002:160:12:424:57:2025:-259.439,-87.8318,-112.203:57:42:137:.:.:1:.:.:.:-0.00190096
chr4	143181748	.	T	A	2623.08	REJECT	NS=2;DP=209;DPB=250.542;AC=2;AN=2;AF=0.25;RO=32;AO=43;PRO=21.9048;PAO=13.9048;QR=1186;QA=1645;PQR=799.481;PQA=501.981;SRF=6;SRR=26;SAF=11;SAR=32;SRP=30.1537;SAP=25.2805;AB=0.205742;ABP=160.198;RUN=1;RPP=11.5447;RPPR=3.0103;RPL=28.0;RPR=15.0;EPP=7.10075;EPPR=12.7819;DPRA=0.0;ODDS=14.5858;GTI=0;TYPE=snp;CIGAR=17M1X6M;NUMALT=6;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.3455:49:20:762:4:155:-18.6116,-14.6907,-116.95:4:9:46:.:.:1:.:.:.:-0.000279671	./1:160.002:160:12:424:39:1490:-259.439,-134.826,-235.543:39:28:137:.:.:1:.:.:.:-0.00190096
chr4	143268702	.	A	G	6006.96	REJECT	NS=2;DP=362;DPB=404.0;AC=2;AN=4;AF=0.5;RO=190;AO=214;PRO=0.0;PAO=0.0;QR=7241;QA=8013;PQR=0.0;PQA=0.0;SRF=71;SRR=119;SAF=78;SAR=136;SRP=29.3423;SAP=37.145;AB=0.529703;ABP=6.10626;RUN=1;RPP=3.37559;RPPR=3.74174;RPL=110.0;RPR=104.0;EPP=14.7403;EPPR=16.222;DPRA=0.0;ODDS=265.958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.971963;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.701;Dels=0.0;FS=0.0;HaplotypeScore=13.7273;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.822;QD=16.425;ReadPosRankSum=-0.1165;SOR=0.6795;ClippingRankSum=-1.514	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:40:1555:43:1579:-119.661,0.0,-117.525:40:50:80:40,38:1118,0,1321:1:.:1:.:.:.:-0.000279671	0/1:129.501:320:150:5686:171:6434:-491.775,0.0,-424.561:170:53:320:150,170:6126,0,5424:.:1:1:.:.:.:-0.00190096
chr4	143305189	.	A	T	1364.24	REJECT	NS=2;DP=237;DPB=269.0;AC=2;AN=4;AF=0.5;RO=198;AO=71;PRO=0.0;PAO=0.0;QR=7649;QA=2708;PQR=0.0;PQA=0.0;SRF=135;SRR=63;SAF=44;SAR=27;SRP=59.8634;SAP=11.8491;AB=0.263941;ABP=133.21;RUN=1;RPP=14.0512;RPPR=15.6882;RPL=26.0;RPR=45.0;EPP=3.28556;EPPR=3.0103;DPRA=0.0;ODDS=175.846;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.218;Dels=0.0;FS=3.927;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2465;QD=11.465;ReadPosRankSum=1.11;SOR=0.368;ClippingRankSum=1.08	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:61:31:1179:32:1216:-92.4404,0.0,-89.1224:31:51:61:29,31:1122,0,1029:1:.:1:.:.:.:-0.000279671	0/1:129.501:206:167:6470:39:1492:-78.4158,0.0,-526.238:39:19:206:167,39:1058,0,6616:.:1:1:.:.:.:-0.00190096
chr4	143324094	.	G	A	2338.48	PASS	SOMATIC;NS=2;DP=333;DPB=333.0;AC=1;AN=3;AF=0.25;RO=243;AO=89;PRO=0.0;PAO=0.0;QR=9412;QA=3474;PQR=0.0;PQA=0.0;SRF=144;SRR=99;SAF=55;SAR=34;SRP=21.1059;SAP=13.7701;AB=0.339695;ABP=61.4909;RUN=1;RPP=15.9171;RPPR=9.52472;RPL=33.0;RPR=56.0;EPP=4.98658;EPPR=4.09157;DPRA=3.69014;ODDS=44.6828;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99177;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.775;Dels=0.0;FS=1.023;HaplotypeScore=2.9462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.355;QD=11.77;ReadPosRankSum=1.374;SOR=0.785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.269:69:70:2671:0:0:0.0,-18.9795,-240.536:0:0:68:67,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:120.1345:262:173:6741:89:3474:-241.505,0.0,-535.352:89:34:262:165,85:39.0:0.339:2:3113,0,6760:.:1:1:.:.:1:-0.00190096
chr4	143344974	.	T	TA	390.846	REJECT	NS=2;DP=329;DPB=392.938;AC=2;AN=4;AF=0.5;RO=253;AO=39;PRO=51.6667;PAO=44.6667;QR=9534;QA=1344;PQR=1858.67;PQA=1605.67;SRF=104;SRR=149;SAF=15;SAR=24;SRP=20.3907;SAP=7.52028;AB=0.118541;ABP=418.831;RUN=1;RPP=7.52028;RPPR=10.2285;RPL=24.0;RPR=15.0;EPP=7.52028;EPPR=3.08755;DPRA=0.0;ODDS=12.2008;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974359;PAIREDR=0.992095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52.9873:86:67:2521:9:303:-6.40407,0.0,-208.68:9:11:81:.:.:1:.:.:.:-0.000279671	0/1:160.002:243:186:7013:30:1041:-39.0009,0.0,-596.416:30:13:231:.:.:1:.:.:.:-0.00190096
chr4	143344974	.	TA	T	390.846	REJECT	NS=2;DP=329;DPB=392.938;AC=2;AN=2;AF=0.0;RO=253;AO=20;PRO=51.6667;PAO=40.6667;QR=9534;QA=681;PQR=1858.67;PQA=1466.67;SRF=104;SRR=149;SAF=6;SAR=14;SRP=20.3907;SAP=9.95901;AB=0.0607903;ABP=554.267;RUN=1;RPP=3.0103;RPPR=10.2285;RPL=10.0;RPR=10.0;EPP=3.0103;EPPR=3.08755;DPRA=0.0;ODDS=12.2008;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.9873:86:67:2521:5:155:-6.40407,-12.237,-222.006:5:6:81:.:.:1:.:.:.:-0.000279671	./1:160.002:243:186:7013:15:526:-39.0009,-48.2268,-683.857:15:6:231:.:.:1:.:.:.:-0.00190096
chr4	143348680	.	C	T	2233.61	PASS	SOMATIC;NS=2;DP=294;DPB=294.0;AC=1;AN=3;AF=0.25;RO=210;AO=84;PRO=0.0;PAO=0.0;QR=8087;QA=3243;PQR=0.0;PQA=0.0;SRF=74;SRR=136;SAF=24;SAR=60;SRP=42.7586;SAP=36.513;AB=0.390698;ABP=25.3209;RUN=1;RPP=17.9004;RPPR=62.7361;RPL=54.0;RPR=30.0;EPP=4.66476;EPPR=13.5988;DPRA=2.72152;ODDS=50.2937;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988095;PAIREDR=0.995238;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.088;Dels=0.0;FS=1.869;HaplotypeScore=7.8649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.163;QD=13.66;ReadPosRankSum=-0.557;SOR=0.879	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.35:77:79:3063:0:0:0.0,-21.4163,-275.776:0:0:77:76,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:120.175:214:131:5024:84:3243:-233.494,0.0,-393.715:83:39:214:128,79:38.0:0.373:2:2951,0,4972:.:1:1:.:.:1:-0.00190096
chr4	143862981	.	G	GA	62.0647	REJECT	NS=2;DP=328;DPB=410.857;AC=2;AN=3;AF=0.25;RO=226;AO=21;PRO=72.5;PAO=49.5;QR=8243;QA=726;PQR=2524.83;PQA=1734.83;SRF=92;SRR=134;SAF=15;SAR=6;SRP=19.9593;SAP=11.386;AB=0.0640244;ABP=544.528;RUN=1;RPP=8.07707;RPPR=12.8492;RPL=7.0;RPR=14.0;EPP=3.94093;EPPR=18.3836;DPRA=0.0;ODDS=3.15025;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=2;MEANALT=18.5;LEN=1;MQM=60.9524;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99115;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61.5118:87:58:2100:7:228:-9.92867,0.0,-192.78:7:10:73:.:.:1:.:.:.:-0.000279671	./1:13.8635:241:168:6143:14:498:-4.10278,-13.4771,-568.756:14:7:202:.:.:1:.:.:.:-0.00190096
chr4	143862981	.	GA	G	62.0647	REJECT	NS=2;DP=328;DPB=410.857;AC=2;AN=3;AF=0.25;RO=226;AO=28;PRO=72.5;PAO=42.0;QR=8243;QA=894;PQR=2524.83;PQA=1454.33;SRF=92;SRR=134;SAF=14;SAR=14;SRP=19.9593;SAP=3.0103;AB=0.0853659;ABP=492.81;RUN=1;RPP=7.97367;RPPR=12.8492;RPL=18.0;RPR=10.0;EPP=7.97367;EPPR=18.3836;DPRA=0.0;ODDS=3.15025;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=18.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99115;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:61.5118:87:58:2100:8:238:-9.92867,-10.7292,-229.273:8:11:73:.:.:1:.:.:.:-0.000279671	0/1:13.8635:241:168:6143:20:656:-4.10278,0.0,-607.104:20:10:202:.:.:1:.:.:.:-0.00190096
chr4	143863671	.	T	C	7303.525000000001	REJECT	NS=2;DP=357;DPB=408.0;AC=3;AN=4;AF=0.75;RO=125;AO=283;PRO=0.0;PAO=0.0;QR=4742;QA=10374;PQR=0.0;PQA=0.0;SRF=72;SRR=53;SAF=181;SAR=102;SRP=9.28151;SAP=50.8978;AB=0.592834;ABP=25.9911;RUN=1;RPP=19.9601;RPPR=4.41741;RPL=118.0;RPR=165.0;EPP=43.9;EPPR=32.2123;DPRA=0.0;ODDS=63.9497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992933;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.268;Dels=0.0;FS=1.3115;HaplotypeScore=12.6092;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.518;QD=25.74;ReadPosRankSum=1.237;SOR=1.229	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3784:-340.594,-27.347,0.0:100:100:100:0,99:3903,296,0:1:.:1:.:.:.:-0.000279671	0/1:129.501:306:125:4742:182:6590:-509.635,0.0,-343.544:181:59:306:125,181:6298,0,4439:.:1:1:.:.:.:-0.00190096
chr4	143863721	.	A	G	7777.34	REJECT	NS=2;DP=358;DPB=406.0;AC=3;AN=4;AF=0.75;RO=125;AO=281;PRO=0.0;PAO=0.0;QR=4844;QA=10706;PQR=0.0;PQA=0.0;SRF=48;SRR=77;SAF=116;SAR=165;SRP=17.62;SAP=21.5644;AB=0.596774;ABP=28.2274;RUN=1;RPP=20.0807;RPPR=4.41741;RPL=164.0;RPR=117.0;EPP=28.1175;EPPR=3.86152;DPRA=0.0;ODDS=60.8535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996441;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.129;Dels=0.0;FS=1.9225;HaplotypeScore=2.9304;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.586;QD=27.845;ReadPosRankSum=-0.319;SOR=0.9145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.456:96:0:0:96:3660:-329.436,-26.0024,0.0:96:100:96:0,96:3849,287,0:1:.:1:.:.:.:-0.000279671	0/1:120.456:310:125:4844:185:7046:-549.786,0.0,-351.748:185:60:310:125,185:6910,0,4504:.:1:1:.:.:.:-0.00190096
chr4	143866615	.	G	A	3318.75	REJECT	NS=1;DP=98;DPB=98.0;AC=2;AN=4;AF=1.0;RO=0;AO=98;PRO=0.0;PAO=0.0;QR=0;QA=3726;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=48;SRP=0.0;SAP=3.09893;AB=0.0;ABP=0.0;RUN=1;RPP=3.09893;RPPR=0.0;RPL=50.0;RPR=48.0;EPP=5.22609;EPPR=0.0;DPRA=0.0;ODDS=65.748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.49;SOR=0.757	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.1415:96:0:0:98:3726:-335.396,-26.554,0.0:96:100:96:0,95:3951,285,0:1:.:1:.:.:.:-0.000279671	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00190096
chr4	143866667	.	C	T	3110.19	REJECT	NS=1;DP=93;DPB=93.0;AC=2;AN=4;AF=1.0;RO=0;AO=93;PRO=0.0;PAO=0.0;QR=0;QA=3512;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=37;SAR=56;SRP=0.0;SAP=11.4393;AB=0.0;ABP=0.0;RUN=1;RPP=3.03365;RPPR=0.0;RPL=47.0;RPR=46.0;EPP=13.3073;EPPR=0.0;DPRA=0.0;ODDS=62.6055;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989247;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=35.58;SOR=1.191	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:93:3512:-316.139,-25.1892,0.0:92:100:92:0,91:3648,272,0:1:.:1:.:.:.:-0.000279671	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00190096
chr4	153004679	.	G	A	1917.28	REJECT	NS=2;DP=362;DPB=414.0;AC=2;AN=4;AF=0.5;RO=316;AO=97;PRO=0.0;PAO=0.0;QR=12081;QA=3702;PQR=0.0;PQA=0.0;SRF=140;SRR=176;SAF=49;SAR=48;SRP=11.9161;SAP=3.03269;AB=0.2343;ABP=256.873;RUN=1;RPP=6.79359;RPPR=21.5915;RPL=55.0;RPR=42.0;EPP=4.10723;EPPR=3.12025;DPRA=0.0;ODDS=169.439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996835;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3355;Dels=0.0;FS=4.0755;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2465;QD=10.05;ReadPosRankSum=1.6865;SOR=0.734;ClippingRankSum=1.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3785:100:51:1958:51:1934:-146.442,0.0,-148.604:49:49:100:50,48:1711,0,1730:1:.:1:.:.:.:-0.000279671	0/1:117.3785:311:265:10123:46:1768:-74.8017,0.0,-826.304:46:15:311:265,46:1046,0,10385:.:1:1:.:.:.:-0.00190096
chr4	153143877	.	C	T	1883.685	REJECT	NS=2;DP=358;DPB=414.0;AC=2;AN=4;AF=0.5;RO=323;AO=91;PRO=0.0;PAO=0.0;QR=12381;QA=3446;PQR=0.0;PQA=0.0;SRF=142;SRR=181;SAF=41;SAR=50;SRP=13.2357;SAP=4.94315;AB=0.219807;ABP=285.323;RUN=1;RPP=9.90651;RPPR=3.17837;RPL=54.0;RPR=37.0;EPP=9.90651;EPPR=63.6838;DPRA=0.0;ODDS=69.8514;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978022;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.089;Dels=0.0;FS=1.187;HaplotypeScore=6.9568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.314;QD=9.2;ReadPosRankSum=-0.3645;SOR=0.6535;ClippingRankSum=0.281	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.372:111:54:2059:58:2180:-165.862,0.0,-154.982:57:52:111:53,57:1887,0,1887:1:.:1:.:.:.:-0.000279671	0/1:122.372:302:269:10322:33:1266:-32.0998,0.0,-846.618:33:11:302:269,33:526,0,10629:.:1:1:.:.:.:-0.00190096
chr4	153149284	.	G	A	1801.73	REJECT	NS=2;DP=350;DPB=398.0;AC=2;AN=4;AF=0.5;RO=300;AO=98;PRO=0.0;PAO=0.0;QR=11459;QA=3657;PQR=0.0;PQA=0.0;SRF=119;SRR=181;SAF=44;SAR=54;SRP=30.8341;SAP=5.22609;AB=0.246231;ABP=225.635;RUN=1;RPP=3.0103;RPPR=6.51361;RPL=49.0;RPR=49.0;EPP=3.36483;EPPR=29.068;DPRA=0.0;ODDS=211.248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979592;PAIREDR=0.993333;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.662;Dels=0.0;FS=3.3255;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0395;QD=9.935;ReadPosRankSum=0.78;SOR=0.4595;ClippingRankSum=-0.964	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:49:1830:46:1713:-128.488,0.0,-138.994:45:48:93:46,45:1477,0,1523:1:.:1:.:.:.:-0.000279671	0/1:129.501:302:251:9629:52:1944:-92.8212,0.0,-784.015:51:17:302:250,51:1272,0,9809:.:1:1:.:.:.:-0.00190096
chr4	153268227	.	C	A	203.5	REJECT	NS=2;DP=100;DPB=147.2;AC=2;AN=2;AF=0.0;RO=36;AO=24;PRO=58.1667;PAO=15.0;QR=1342;QA=339;PQR=2045.67;PQA=260.0;SRF=2;SRR=34;SAF=0;SAR=24;SRP=64.7766;SAP=55.1256;AB=0.24;ABP=61.7269;RUN=1;RPP=3.37221;RPPR=11.6962;RPL=11.0;RPR=13.0;EPP=3.37221;EPPR=11.6962;DPRA=0.0;ODDS=18.1306;GTI=0;TYPE=snp;CIGAR=1X44M;NUMALT=3;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.958333;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.7366:28:10:373:8:102:-9.16648,-15.28,-233.897:8:38:21:.:.:1:.:.:.:-0.000279671	./1:130.196:72:26:969:16:237:-18.8351,-45.4729,-643.011:16:26:61:.:.:1:.:.:.:-0.00190096
chr4	153268227	.	C	CA	203.5	REJECT	NS=2;DP=100;DPB=147.2;AC=2;AN=2;AF=0.0;RO=36;AO=5;PRO=58.1667;PAO=31.1667;QR=1342;QA=103;PQR=2045.67;PQA=1033.67;SRF=2;SRR=34;SAF=0;SAR=5;SRP=64.7766;SAP=13.8677;AB=0.0694444;ABP=118.943;RUN=1;RPP=3.44459;RPPR=11.6962;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=11.6962;DPRA=0.0;ODDS=18.1306;GTI=0;TYPE=ins;CIGAR=1M1I44M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.7366:28:10:373:0:0:-9.16648,-12.6108,-71.7332:0:0:21:.:.:1:.:.:.:-0.000279671	./1:130.196:72:26:969:5:103:-18.8351,-17.9803,-159.024:5:8:61:.:.:1:.:.:.:-0.00190096
chr4	153268227	.	CA	C	203.5	REJECT	NS=2;DP=100;DPB=147.2;AC=2;AN=4;AF=0.5;RO=36;AO=17;PRO=58.1667;PAO=32.6667;QR=1342;QA=323;PQR=2045.67;PQA=1098.67;SRF=2;SRR=34;SAF=1;SAR=16;SRP=64.7766;SAP=31.7504;AB=0.17;ABP=97.5996;RUN=1;RPP=3.13803;RPPR=11.6962;RPL=9.0;RPR=8.0;EPP=3.13803;EPPR=11.6962;DPRA=0.0;ODDS=18.1306;GTI=0;TYPE=del;CIGAR=1M1D43M;NUMALT=3;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.941176;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.82;FS=3.699;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.625;QD=0.96;ReadPosRankSum=-0.429;SOR=1.714;ClippingRankSum=-1.444	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.3683:34:10:373:3:78:-9.16648,0.0,-68.3955:6:18:31:32,9:96,0,692:1:.:1:.:.:.:-0.000279671	0/1:130.196:72:26:969:14:245:-18.8351,0.0,-180.834:14:23:61:.:.:.:.:1:.:.:.:-0.00190096
chr4	153554397	.	G	A	11092.55	REJECT	NS=2;DP=292;DPB=339.0;AC=4;AN=4;AF=1.0;RO=0;AO=339;PRO=0.0;PAO=0.0;QR=0;QA=13092;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=237;SAR=102;SRP=0.0;SAP=119.751;AB=0.0;ABP=0.0;RUN=1;RPP=14.8541;RPPR=0.0;RPL=148.0;RPR=191.0;EPP=4.09283;EPPR=0.0;DPRA=0.0;ODDS=62.3674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99705;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9995;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.435;SOR=1.7465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:93:3596:-323.706,-25.2107,0.0:91:100:91:0,90:3777,270,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:246:0:0:246:9496:-854.178,-66.6324,0.0:246:100:246:0,246:10608,731,0:.:1:1:.:.:.:-0.00190096
chr4	153555774	.	A	G	13726.8	REJECT	NS=2;DP=357;DPB=414.0;AC=4;AN=4;AF=1.0;RO=0;AO=414;PRO=0.0;PAO=0.0;QR=0;QA=16036;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=222;SRP=0.0;SAP=7.73089;AB=0.0;ABP=0.0;RUN=1;RPP=21.8927;RPPR=0.0;RPL=237.0;RPR=177.0;EPP=19.4589;EPPR=0.0;DPRA=0.0;ODDS=74.8043;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992754;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.715;SOR=0.7945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:112:0:0:113:4313:-388.176,-30.612,0.0:112:100:112:0,112:4619,336,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:300:0:0:301:11723:-1054.43,-81.5523,0.0:300:100:300:0,300:13138,903,0:.:1:1:.:.:.:-0.00190096
chr4	154513927	.	G	C	1649.575	REJECT	NS=2;DP=325;DPB=376.0;AC=2;AN=4;AF=0.5;RO=297;AO=79;PRO=0.0;PAO=0.0;QR=11514;QA=3096;PQR=0.0;PQA=0.0;SRF=153;SRR=144;SAF=45;SAR=34;SRP=3.60252;SAP=6.33623;AB=0.210106;ABP=277.471;RUN=1;RPP=17.5509;RPPR=41.9725;RPL=28.0;RPR=51.0;EPP=26.1269;EPPR=28.4611;DPRA=0.0;ODDS=72.1674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983165;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4155;Dels=0.0;FS=4.741;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3735;QD=9.16;ReadPosRankSum=0.2845;SOR=0.8155;ClippingRankSum=0.579	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.198:99:52:2021:48:1880:-142.106,0.0,-154.801:48:48:99:50,48:1656,0,1727:1:.:1:.:.:.:-0.000279671	0/1:122.198:275:245:9493:31:1216:-34.5992,0.0,-779.11:31:11:275:243,31:542,0,9730:.:1:1:.:.:.:-0.00190096
chr4	156007856	.	G	C	4090.1	REJECT	NS=2;DP=226;DPB=257.0;AC=2;AN=4;AF=0.5;RO=112;AO=145;PRO=0.0;PAO=0.0;QR=4165;QA=5516;PQR=0.0;PQA=0.0;SRF=67;SRR=45;SAF=86;SAR=59;SRP=12.3942;SAP=13.9276;AB=0.564202;ABP=12.2116;RUN=1;RPP=106.178;RPPR=109.18;RPL=31.0;RPR=114.0;EPP=3.14508;EPPR=3.0103;DPRA=0.0;ODDS=164.233;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.486;Dels=0.0;FS=2.323;HaplotypeScore=3.9234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.724;QD=19.995;ReadPosRankSum=0.941;SOR=0.5765;ClippingRankSum=0.837	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:60:28:1030:33:1241:-95.2673,0.0,-76.241:32:53:60:28,32:1160,0,964:1:.:1:.:.:.:-0.000279671	0/1:129.501:196:84:3135:112:4275:-331.571,0.0,-228.939:112:57:196:84,112:4231,0,2883:.:1:1:.:.:.:-0.00190096
chr4	156007879	.	T	C	5267.59	REJECT	NS=2;DP=288;DPB=330.0;AC=2;AN=4;AF=0.5;RO=146;AO=184;PRO=0.0;PAO=0.0;QR=5543;QA=6988;PQR=0.0;PQA=0.0;SRF=90;SRR=56;SAF=112;SAR=72;SRP=20.2036;SAP=21.8927;AB=0.557576;ABP=12.5121;RUN=1;RPP=20.0516;RPPR=16.3961;RPL=73.0;RPR=111.0;EPP=5.32339;EPPR=3.06979;DPRA=0.0;ODDS=252.346;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98913;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3125;Dels=0.0;FS=0.4185;HaplotypeScore=2.9612;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.18;QD=19.635;ReadPosRankSum=-0.0005;SOR=0.6155;ClippingRankSum=0.488	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:39:1489:45:1666:-127.235,0.0,-111.303:44:53:83:39,44:1538,0,1368:1:.:1:.:.:.:-0.000279671	0/1:129.501:246:107:4054:139:5322:-412.13,0.0,-298.031:139:57:246:107,139:5268,0,3771:.:1:1:.:.:.:-0.00190096
chr4	156007965	.	A	G	1659.37	REJECT	NS=2;DP=333;DPB=380.0;AC=2;AN=4;AF=0.5;RO=295;AO=85;PRO=0.0;PAO=0.0;QR=11401;QA=3217;PQR=0.0;PQA=0.0;SRF=105;SRR=190;SAF=39;SAR=46;SRP=56.193;SAP=4.26209;AB=0.223684;ABP=255.015;RUN=1;RPP=14.2764;RPPR=3.90097;RPL=53.0;RPR=32.0;EPP=30.8307;EPPR=22.1561;DPRA=0.0;ODDS=120.474;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2353;MQMR=60.0;PAIRED=0.988235;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.629;Dels=0.0;FS=8.3975;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.8205;QD=9.825;ReadPosRankSum=0.7535;SOR=0.717;ClippingRankSum=-1.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.024:92:48:1825:46:1747:-131.813,0.0,-138.796:45:48:92:47,44:1577,0,1636:1:.:1:.:.:.:-0.000279671	0/1:118.024:286:247:9576:39:1470:-54.7472,0.0,-783.864:39:14:286:247,39:781,0,9879:.:1:1:.:.:.:-0.00190096
chr4	166509271	.	A	T	13287.55	REJECT	NS=2;DP=357;DPB=406.0;AC=4;AN=4;AF=1.0;RO=0;AO=406;PRO=0.0;PAO=0.0;QR=0;QA=15280;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=220;SRP=0.0;SAP=9.19311;AB=0.0;ABP=0.0;RUN=1;RPP=3.78048;RPPR=0.0;RPL=197.0;RPR=209.0;EPP=19.7831;EPPR=0.0;DPRA=0.0;ODDS=64.8287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995074;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.645;SOR=0.907	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:97:3655:-329.02,-26.2797,0.0:95:100:95:0,93:3745,279,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:309:0:0:309:11625:-1045.59,-83.6236,0.0:309:100:309:0,309:12923,903,0:.:1:1:.:.:.:-0.00190096
chr4	171008696	.	G	A	14028.2	REJECT	NS=2;DP=366;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=16288;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=185;SAR=236;SRP=0.0;SAP=16.426;AB=0.0;ABP=0.0;RUN=1;RPP=5.28493;RPPR=0.0;RPL=221.0;RPR=200.0;EPP=40.2761;EPPR=0.0;DPRA=0.0;ODDS=72.3237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997625;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8059;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.22;SOR=0.947	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.2425:109:0:0:109:4202:-378.181,-29.5347,0.0:109:100:109:0,109:4470,327,0:1:.:1:.:.:.:-0.000279671	1/1:124.2425:312:0:0:312:12086:-1087.02,-84.4905,0.0:312:100:312:0,312:13528,927,0:.:1:1:.:.:.:-0.00190096
chr4	172516637	.	G	A	9329.435000000001	REJECT	NS=2;DP=249;DPB=286.0;AC=4;AN=4;AF=1.0;RO=0;AO=286;PRO=0.0;PAO=0.0;QR=0;QA=10969;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=71;SRP=0.0;SAP=160.45;AB=0.0;ABP=0.0;RUN=1;RPP=131.325;RPPR=0.0;RPL=78.0;RPR=208.0;EPP=3.13178;EPPR=0.0;DPRA=0.0;ODDS=49.8425;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996503;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.94;SOR=2.487	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:72:0:0:73:2790:-251.206,-19.7713,0.0:72:100:72:0,71:3043,213,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:213:0:0:213:8179:-735.784,-57.7018,0.0:213:100:213:0,213:9154,635,0:.:1:1:.:.:.:-0.00190096
chr4	172516685	.	A	G	3192.75	PASS	SOMATIC;NS=2;DP=422;DPB=422.0;AC=1;AN=3;AF=0.25;RO=299;AO=122;PRO=0.0;PAO=0.0;QR=11552;QA=4598;PQR=0.0;PQA=0.0;SRF=181;SRR=118;SAF=66;SAR=56;SRP=31.835;SAP=4.7902;AB=0.376543;ABP=45.9036;RUN=1;RPP=3.29508;RPPR=3.36616;RPL=63.0;RPR=59.0;EPP=13.2625;EPPR=41.7119;DPRA=3.30612;ODDS=61.5454;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993311;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.133;Dels=0.0;FS=4.534;HaplotypeScore=2.9217;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.137;QD=12.81;ReadPosRankSum=1.711;SOR=0.469	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.232:95:97:3734:0:0:0.0,-26.3029,-336.135:0:0:94:91,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:119.116:324:202:7818:122:4598:-325.805,0.0,-615.443:122:38:324:193,115:37.0:0.371:2:4178,0,7812:.:1:1:.:.:1:-0.00190096
chr4	172516765	.	C	T	1857.4	PASS	SOMATIC;NS=2;DP=315;DPB=315.0;AC=1;AN=3;AF=0.25;RO=237;AO=76;PRO=0.0;PAO=0.0;QR=9068;QA=2903;PQR=0.0;PQA=0.0;SRF=71;SRR=166;SAF=18;SAR=58;SRP=85.7003;SAP=48.7255;AB=0.312757;ABP=77.0101;RUN=1;RPP=7.12467;RPPR=85.7003;RPL=44.0;RPR=32.0;EPP=3.0103;EPPR=4.55873;DPRA=3.375;ODDS=45.9219;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.311;Dels=0.0;FS=8.76;HaplotypeScore=3.9968;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.027;QD=10.3;ReadPosRankSum=0.238;SOR=1.278	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:71:72:2721:0:0:0.0,-19.5177,-245.037:0:0:71:70,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:129.501:243:165:6347:76:2903:-195.883,0.0,-505.654:76:32:241:160,74:38.0:0.32:2:2531,0,6361:.:1:1:.:.:1:-0.00190096
chr4	184511265	.	A	G	1723.15	REJECT	NS=2;DP=361;DPB=416.0;AC=2;AN=4;AF=0.5;RO=324;AO=91;PRO=0.0;PAO=0.0;QR=12471;QA=3490;PQR=0.0;PQA=0.0;SRF=182;SRR=142;SAF=51;SAR=40;SRP=13.7336;SAP=5.89764;AB=0.21875;ABP=288.83;RUN=1;RPP=4.17955;RPPR=3.25157;RPL=42.0;RPR=49.0;EPP=7.04303;EPPR=22.5536;DPRA=0.0;ODDS=162.756;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2115;Dels=0.0;FS=1.3975;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.415;QD=8.79;ReadPosRankSum=0.5465;SOR=0.556;ClippingRankSum=0.886	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2785:105:60:2280:47:1768:-130.141,0.0,-176.24:46:43:105:59,45:1522,0,2051:1:.:1:.:.:.:-0.000279671	0/1:119.2785:308:264:10191:44:1722:-71.4513,0.0,-833.204:44:14:307:262,44:1017,0,10405:.:1:1:.:.:.:-0.00190096
chr4	187511861	.	G	A	3747.025	REJECT	NS=2;DP=270;DPB=313.0;AC=2;AN=4;AF=0.5;RO=176;AO=137;PRO=0.0;PAO=0.0;QR=6586;QA=5297;PQR=0.0;PQA=0.0;SRF=49;SRR=127;SAF=43;SAR=94;SRP=78.0742;SAP=44.2366;AB=0.4377;ABP=13.5624;RUN=1;RPP=10.0002;RPPR=50.4372;RPL=79.0;RPR=58.0;EPP=4.29416;EPPR=3.0103;DPRA=0.0;ODDS=224.358;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978102;PAIREDR=0.994318;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.3455;Dels=0.0;FS=1.654;HaplotypeScore=2.924;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5935;QD=15.025;ReadPosRankSum=1.0195;SOR=0.6215;ClippingRankSum=-0.681	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:50:1845:35:1366:-99.9613,0.0,-143.067:34:41:84:49,34:1195,0,1688:1:.:1:.:.:.:-0.000279671	0/1:129.501:228:126:4741:102:3931:-291.884,0.0,-364.753:102:45:228:126,102:3712,0,4574:.:1:1:.:.:.:-0.00190096
chr4	187516880	.	A	G	5047.46	REJECT	NS=2;DP=338;DPB=391.0;AC=2;AN=4;AF=0.5;RO=201;AO=190;PRO=0.0;PAO=0.0;QR=7744;QA=7159;PQR=0.0;PQA=0.0;SRF=122;SRR=79;SAF=122;SAR=68;SRP=22.9857;SAP=36.3367;AB=0.485934;ABP=3.68229;RUN=1;RPP=6.71323;RPPR=19.4422;RPL=86.0;RPR=104.0;EPP=6.71323;EPPR=5.44105;DPRA=0.0;ODDS=336.684;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8632;MQMR=60.0;PAIRED=0.989474;PAIREDR=0.995025;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6555;Dels=0.0;FS=1.7175;HaplotypeScore=5.8901;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0525;QD=16.62;ReadPosRankSum=0.4405;SOR=0.854;ClippingRankSum=-0.659	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.4175:104:51:1965:55:2016:-152.728,0.0,-148.174:53:51:104:50,52:1712,0,1821:1:.:1:.:.:.:-0.000279671	0/1:122.4175:285:150:5779:135:5143:-385.4,0.0,-442.653:135:47:285:150,135:4843,0,5634:.:1:1:.:.:.:-0.00190096
chr4	187518041	.	T	C	6859.635	REJECT	NS=2;DP=433;DPB=494.0;AC=2;AN=4;AF=0.5;RO=246;AO=248;PRO=0.0;PAO=0.0;QR=9282;QA=9332;PQR=0.0;PQA=0.0;SRF=138;SRR=108;SAF=128;SAR=120;SRP=10.9547;SAP=3.57068;AB=0.502024;ABP=3.02788;RUN=1;RPP=8.05372;RPPR=3.32808;RPL=112.0;RPR=136.0;EPP=5.25182;EPPR=3.89301;DPRA=0.0;ODDS=383.644;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991935;PAIREDR=0.987805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.937;Dels=0.0;FS=3.4765;HaplotypeScore=6.8234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.286;QD=17.77;ReadPosRankSum=0.526;SOR=0.47;ClippingRankSum=0.922	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:120:60:2224:61:2250:-169.736,0.0,-167.777:60:50:120:59,60:2110,0,2028:1:.:1:.:.:.:-0.000279671	0/1:129.501:372:186:7058:187:7082:-535.984,0.0,-533.829:186:50:372:186,186:6760,0,6754:.:1:1:.:.:.:-0.00190096
chr4	187518976	.	C	T	2174.27	PASS	DP=122;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.98;Dels=0.0;FS=2.2685;HaplotypeScore=6.8864;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1195;QD=16.535;ReadPosRankSum=0.1505;SOR=0.7215;ClippingRankSum=-0.182	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,25:65:99.0:924,0,3067:25:38:65:1:.:.:.:.:.:-0.000279671	0/1:85,94:179:99.0:3481,0,3083:94:53:179:.:1:.:.:.:.:-0.00190096
chr4	187518976	.	CTCAT	TTCAC	3044.8	REJECT	NS=2;DP=233;DPB=238.6;AC=2;AN=4;AF=0.5;RO=117;AO=112;PRO=8.0;PAO=6.0;QR=4387;QA=4066;PQR=276.0;PQA=216.0;SRF=47;SRR=70;SAF=43;SAR=69;SRP=12.8283;SAP=16.1167;AB=0.480687;ABP=3.76519;RUN=1;RPP=77.5383;RPPR=55.1442;RPL=87.0;RPR=25.0;EPP=5.80219;EPPR=7.18621;DPRA=0.0;ODDS=141.625;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=3.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:140.076:66:40:1463:23:812:-62.2759,0.0,-114.189:23:37:63:.:.:1:.:.:.:-0.000279671	0/1:140.076:167:77:2924:89:3254:-257.275,0.0,-239.729:89:54:166:.:.:1:.:.:.:-0.00190096
chr4	187518980	.	T	C	2048.77	PASS	DP=115;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.6705;Dels=0.0;FS=2.819;HaplotypeScore=5.878;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7985;QD=16.39;ReadPosRankSum=-0.145;SOR=0.802;ClippingRankSum=0.867	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,24:64:99.0:884,0,3070:24:38:64:1:.:.:.:.:.:-0.000279671	0/1:78,89:167:99.0:3270,0,2806:89:53:167:.:1:.:.:.:.:-0.00190096
chr4	187519206	.	C	G	13984.4	REJECT	NS=2;DP=369;DPB=427.0;AC=4;AN=4;AF=1.0;RO=0;AO=427;PRO=0.0;PAO=0.0;QR=0;QA=16371;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=220;SRP=0.0;SAP=3.86974;AB=0.0;ABP=0.0;RUN=1;RPP=4.47999;RPPR=0.0;RPL=222.0;RPR=205.0;EPP=27.222;EPPR=0.0;DPRA=0.0;ODDS=76.0652;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.51;SOR=0.7575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:115:4419:-397.699,-31.1596,0.0:113:100:113:0,112:4592,337,0:1:.:1:.:.:.:-0.000279671	1/1:129.501:312:0:0:312:11952:-1075.0,-84.4851,0.0:312:100:312:0,312:13339,924,0:.:1:1:.:.:.:-0.00190096
chr4	187521037	.	C	A	3875.975	REJECT	NS=2;DP=242;DPB=286.0;AC=2;AN=4;AF=0.5;RO=141;AO=145;PRO=0.0;PAO=0.0;QR=5353;QA=5469;PQR=0.0;PQA=0.0;SRF=114;SRR=27;SAF=117;SAR=28;SRP=119.577;SAP=121.633;AB=0.506993;ABP=3.13178;RUN=1;RPP=10.9324;RPPR=3.76493;RPL=61.0;RPR=84.0;EPP=5.54119;EPPR=6.47542;DPRA=0.0;ODDS=246.685;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=0.992908;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1745;Dels=0.0;FS=3.6775;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2765;QD=16.565;ReadPosRankSum=1.7875;SOR=0.6425;ClippingRankSum=0.102	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:48:1792:40:1495:-110.762,0.0,-137.492:39:45:86:47,38:1212,0,1689:1:.:1:.:.:.:-0.000279671	0/1:129.501:198:93:3561:105:3974:-303.884,0.0,-266.746:105:53:198:93,105:3829,0,3401:.:1:1:.:.:.:-0.00190096
chr4	187525020	.	A	C	5298.48	REJECT	NS=2;DP=339;DPB=390.0;AC=2;AN=4;AF=0.5;RO=199;AO=191;PRO=0.0;PAO=0.0;QR=7587;QA=7301;PQR=0.0;PQA=0.0;SRF=96;SRR=103;SAF=95;SAR=96;SRP=3.54498;SAP=3.02167;AB=0.489744;ABP=3.36664;RUN=1;RPP=15.3911;RPPR=3.89417;RPL=112.0;RPR=79.0;EPP=10.1159;EPPR=3.89417;DPRA=0.0;ODDS=316.817;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994764;PAIREDR=0.98995;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.691;Dels=0.0;FS=0.6995;HaplotypeScore=2.9653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6085;QD=17.305;ReadPosRankSum=-0.244;SOR=0.633;ClippingRankSum=0.834	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:51:1926:48:1832:-138.087,0.0,-146.547:47:48:98:50,47:1669,0,1769:1:.:1:.:.:.:-0.000279671	0/1:129.501:290:148:5661:143:5469:-413.098,0.0,-430.408:142:49:290:147,142:5193,0,5444:.:1:1:.:.:.:-0.00190096
chr4	187530313	.	C	T	8583.645	REJECT	NS=2;DP=229;DPB=270.0;AC=4;AN=4;AF=1.0;RO=0;AO=270;PRO=0.0;PAO=0.0;QR=0;QA=10369;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=170;SAR=100;SRP=0.0;SAP=42.4185;AB=0.0;ABP=0.0;RUN=1;RPP=107.531;RPPR=0.0;RPL=78.0;RPR=192.0;EPP=3.29983;EPPR=0.0;DPRA=0.0;ODDS=55.5046;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996296;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.18;SOR=1.4265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.198:81:0:0:82:3164:-284.858,-22.2303,0.0:81:100:81:0,81:3410,244,0:1:.:1:.:.:.:-0.000279671	1/1:125.198:188:0:0:188:7205:-648.181,-50.9104,0.0:188:100:188:0,188:8052,557,0:.:1:1:.:.:.:-0.00190096
chr4	187531022	.	A	G	6053.385	REJECT	NS=2;DP=344;DPB=398.0;AC=2;AN=4;AF=0.5;RO=185;AO=213;PRO=0.0;PAO=0.0;QR=7019;QA=8176;PQR=0.0;PQA=0.0;SRF=102;SRR=83;SAF=120;SAR=93;SRP=7.24761;SAP=10.4422;AB=0.535176;ABP=7.28777;RUN=1;RPP=3.26517;RPPR=4.99397;RPL=109.0;RPR=104.0;EPP=3.02049;EPPR=3.02204;DPRA=0.0;ODDS=341.026;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.973;PAIRED=0.995305;PAIREDR=0.983784;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.464;Dels=0.0;FS=4.1525;HaplotypeScore=5.7932;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.422;QD=19.13;ReadPosRankSum=0.7885;SOR=0.944;ClippingRankSum=-0.468	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:52:1972:54:2091:-159.479,0.0,-148.763:53:51:105:51,53:1917,0,1747:1:.:1:.:.:.:-0.000279671	0/1:129.501:291:133:5047:159:6085:-468.278,0.0,-374.885:159:54:291:132,159:5926,0,4701:.:1:1:.:.:.:-0.00190096
chr4	187534363	.	G	A	9318.14	REJECT	NS=2;DP=371;DPB=433.0;AC=2;AN=4;AF=0.5;RO=125;AO=308;PRO=0.0;PAO=0.0;QR=4864;QA=11750;PQR=0.0;PQA=0.0;SRF=72;SRR=53;SAF=161;SAR=147;SRP=9.28151;SAP=4.39215;AB=0.711316;ABP=170.956;RUN=1;RPP=16.6596;RPPR=4.41741;RPL=176.0;RPR=132.0;EPP=3.26411;EPPR=13.8677;DPRA=0.0;ODDS=284.864;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99026;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.628;Dels=0.0;FS=7.5315;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6625;QD=23.47;ReadPosRankSum=-0.339;SOR=0.9015;ClippingRankSum=1.155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3855:122:65:2540:58:2229:-167.267,0.0,-195.237:57:47:122:65,57:1939,0,2335:1:.:1:.:.:.:-0.000279671	0/1:117.3855:309:60:2324:250:9521:-772.405,0.0,-125.475:249:81:309:60,249:9695,0,1692:.:1:1:.:.:.:-0.00190096
chr4	187534375	.	A	G	2292.77	PASS	SOMATIC;NS=2;DP=420;DPB=420.0;AC=1;AN=3;AF=0.25;RO=328;AO=91;PRO=0.0;PAO=0.0;QR=12652;QA=3489;PQR=0.0;PQA=0.0;SRF=161;SRR=167;SAF=47;SAR=44;SRP=3.24863;SAP=3.22506;AB=0.31058;ABP=94.3233;RUN=1;RPP=3.22506;RPPR=5.65844;RPL=47.0;RPR=44.0;EPP=3.22506;EPPR=10.6634;DPRA=2.30709;ODDS=79.61;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978022;PAIREDR=0.993902;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.631;Dels=0.0;FS=0.0;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.275;QD=10.26;ReadPosRankSum=0.899;SOR=0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.933:123:126:4828:0:0:0.0,-34.1482,-434.499:0:0:122:118,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:122.9665:291:202:7824:91:3489:-234.452,0.0,-624.749:90:31:291:195,84:38.0:0.291:2:3015,0,7840:.:1:1:.:.:1:-0.00190096
chr4	187538133	.	A	G	4898.03	REJECT	NS=2;DP=206;DPB=244.0;AC=2;AN=4;AF=0.5;RO=71;AO=173;PRO=0.0;PAO=0.0;QR=2693;QA=6530;PQR=0.0;PQA=0.0;SRF=50;SRR=21;SAF=130;SAR=43;SRP=28.7315;SAP=98.0154;AB=0.709016;ABP=95.6005;RUN=1;RPP=136.173;RPPR=25.3061;RPL=35.0;RPR=138.0;EPP=20.1938;EPPR=3.7749;DPRA=0.0;ODDS=78.571;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982659;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7525;Dels=0.0;FS=3.8955;HaplotypeScore=1.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0925;QD=22.19;ReadPosRankSum=0.591;SOR=1.2995;ClippingRankSum=-0.73	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:47:1773:27:1011:-70.9836,0.0,-139.6:27:36:74:47,27:869,0,1762:1:.:1:.:.:.:-0.000279671	0/1:129.501:169:24:920:146:5519:-450.528,0.0,-36.7346:145:86:169:24,144:5575,0,520:.:1:1:.:.:.:-0.00190096
chr4	187538330	.	G	A	2338.8	PASS	SOMATIC;NS=2;DP=375;DPB=375.0;AC=1;AN=3;AF=0.25;RO=284;AO=91;PRO=0.0;PAO=0.0;QR=10798;QA=3511;PQR=0.0;PQA=0.0;SRF=112;SRR=172;SAF=38;SAR=53;SRP=30.536;SAP=8.37933;AB=0.330909;ABP=71.3051;RUN=1;RPP=8.37933;RPPR=3.49965;RPL=38.0;RPR=53.0;EPP=15.6335;EPPR=34.3284;DPRA=2.75;ODDS=63.3681;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7802;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989437;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.808;Dels=0.0;FS=1.004;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.706;QD=11.19;ReadPosRankSum=0.329;SOR=0.596	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:97:100:3789:0:0:0.0,-27.0945,-341.058:0:0:97:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000279671	0/1:129.501:274:184:7009:91:3511:-241.32,0.0,-555.995:91:33:274:176,86:39.0:0.324:2:3095,0,6974:.:1:1:.:.:1:-0.00190096
chr4	187538942	.	T	G	7527.99	REJECT	NS=2;DP=326;DPB=365.0;AC=2;AN=3;AF=0.5;RO=81;AO=190;PRO=0.0;PAO=0.0;QR=3130;QA=7257;PQR=0.0;PQA=0.0;SRF=44;SRR=37;SAF=111;SAR=79;SRP=4.32391;SAP=14.7134;AB=0.520548;ABP=4.34888;RUN=1;RPP=3.74174;RPPR=4.32391;RPL=99.0;RPR=91.0;EPP=3.42174;EPPR=6.2541;DPRA=0.0;ODDS=225.489;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994737;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.416;Dels=0.0;FS=0.755;HaplotypeScore=4.8573;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1325;QD=22.315;ReadPosRankSum=0.549;SOR=0.8045;ClippingRankSum=-0.987	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:43:1685:34:1319:-97.8828,0.0,-130.832:34:44:76:42,34:1212,0,1527:1:.:1:.:.:.:-0.000279671	./1:129.501:288:38:1445:156:5938:-664.94,-183.347,-260.789:156:54:288:38,156:8394,2341,3357:.:1:1:.:.:.:-0.00190096
chr4	187538942	.	T	A	7527.99	PASS	SOMATIC;NS=2;DP=365;DPB=365.0;AC=2;AN=2;AF=0.25;RO=81;AO=94;PRO=0.0;PAO=0.0;QR=3130;QA=3652;PQR=0.0;PQA=0.0;SRF=44;SRR=37;SAF=57;SAR=37;SRP=4.32391;SAP=12.2506;AB=0.326389;ABP=78.4086;RUN=1;RPP=3.84193;RPPR=4.32391;RPL=50.0;RPR=44.0;EPP=3.0103;EPPR=6.2541;DPRA=0.0;ODDS=225.489;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.325;Dels=0.0;FS=0.656;HaplotypeScore=4.8573;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.302;QD=29.05;ReadPosRankSum=-0.568;SOR=0.798	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:77:43:1685:0:0:-97.8828,-109.547,-249.602:0:0:77:.:.:.:.:1:.:.:.:-0.000279671	./1:129.501:288:38:1445:94:3652:-664.94,-372.194,-466.399:94:33:288:38,94:8394,4685,5878:.:1:1:.:.:.:-0.00190096
chr4	187542755	.	T	C	6123.280000000001	REJECT	NS=2;DP=369;DPB=426.0;AC=2;AN=4;AF=0.5;RO=208;AO=218;PRO=0.0;PAO=0.0;QR=7917;QA=8400;PQR=0.0;PQA=0.0;SRF=105;SRR=103;SAF=111;SAR=107;SRP=3.05206;SAP=3.16967;AB=0.511737;ABP=3.52004;RUN=1;RPP=6.23763;RPPR=3.67845;RPL=100.0;RPR=118.0;EPP=5.56029;EPPR=3.05206;DPRA=0.0;ODDS=352.855;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981651;PAIREDR=0.995192;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0115;Dels=0.0;FS=0.0;HaplotypeScore=5.8706;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.531;QD=18.81;ReadPosRankSum=0.148;SOR=0.712;ClippingRankSum=-0.787	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8545:111:53:2046:59:2230:-170.348,0.0,-153.808:58:53:111:52,58:2108,0,1817:1:.:1:.:.:.:-0.000279671	0/1:118.8545:313:155:5871:159:6170:-469.928,0.0,-443.022:158:50:313:155,158:5939,0,5582:.:1:1:.:.:.:-0.00190096
chr4	187557893	.	T	C	11019.3	REJECT	NS=2;DP=406;DPB=455.0;AC=2;AN=4;AF=0.5;RO=100;AO=355;PRO=0.0;PAO=0.0;QR=3879;QA=13702;PQR=0.0;PQA=0.0;SRF=44;SRR=56;SAF=184;SAR=171;SRP=6.13722;SAP=4.04404;AB=0.78022;ABP=313.34;RUN=1;RPP=8.88857;RPPR=15.518;RPL=193.0;RPR=162.0;EPP=4.77806;EPPR=3.0103;DPRA=0.0;ODDS=145.405;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.194;Dels=0.0;FS=11.988;HaplotypeScore=3.9462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8955;QD=25.175;ReadPosRankSum=0.444;SOR=1.0725;ClippingRankSum=-1.201	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:54:2084:44:1699:-126.369,0.0,-161.031:43:45:97:53,43:1561,0,1897:1:.:1:.:.:.:-0.000279671	0/1:129.501:357:46:1795:311:12003:-982.85,0.0,-64.7516:311:87:357:46,311:12362,0,949:.:1:1:.:.:.:-0.00190096
chr4	187584771	.	C	G	8630.96	REJECT	NS=2;DP=237;DPB=265.0;AC=4;AN=4;AF=1.0;RO=1;AO=264;PRO=0.0;PAO=0.0;QR=15;QA=9939;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=61;SAR=203;SRP=5.18177;SAP=168.865;AB=0.0;ABP=0.0;RUN=1;RPP=95.4295;RPPR=5.18177;RPL=185.0;RPR=79.0;EPP=3.1419;EPPR=5.18177;DPRA=0.0;ODDS=38.6427;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.716;Dels=0.0;FS=0.0;HaplotypeScore=3.8795;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.825;QD=27.22;ReadPosRankSum=1.452;SOR=2.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.0515:54:0:0:55:2054:-185.056,-14.9073,0.0:54:100:54:0,53:2198,159,0:1:.:1:.:.:.:-0.000279671	1/1:120.895:210:1:15:209:7885:-707.969,-55.4836,0.0:209:100:210:1,209:8774,611,0:.:1:1:.:.:.:-0.00190096
chr4	187627792	.	T	C	11346.349999999999	REJECT	NS=2;DP=300;DPB=343.0;AC=4;AN=4;AF=1.0;RO=1;AO=342;PRO=0.0;PAO=0.0;QR=39;QA=13152;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=196;SAR=146;SRP=5.18177;SAP=18.8836;AB=0.0;ABP=0.0;RUN=1;RPP=6.66752;RPPR=5.18177;RPL=183.0;RPR=159.0;EPP=15.3026;EPPR=5.18177;DPRA=0.0;ODDS=56.7535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.182;Dels=0.0;FS=1.683;HaplotypeScore=11.7666;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.247;QD=32.065;ReadPosRankSum=-1.597;SOR=1.0025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.8325:83:0:0:84:3237:-291.431,-22.7726,0.0:83:100:83:0,83:3396,249,0:1:.:1:.:.:.:-0.160002	1/1:123.8325:258:1:39:258:9915:-888.333,-66.6261,0.0:257:100:258:1,256:10987,721,0:.:1:1:.:.:.:-0.00190096
chr4	187628398	.	C	G	13179.25	REJECT	NS=2;DP=350;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=405;PRO=0.0;PAO=0.0;QR=0;QA=15429;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=206;SAR=199;SRP=0.0;SAP=3.27302;AB=0.0;ABP=0.0;RUN=1;RPP=8.84915;RPPR=0.0;RPL=186.0;RPR=219.0;EPP=4.21667;EPPR=0.0;DPRA=0.0;ODDS=71.716;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992593;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8978;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.285;SOR=0.759	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.653:107:0:0:108:4136:-372.256,-29.2708,0.0:107:100:107:0,106:4372,318,0:1:.:1:.:.:.:-0.160002	1/1:125.653:296:0:0:297:11293:-1015.75,-80.4026,0.0:296:100:296:0,296:12556,873,0:.:1:1:.:.:.:-0.00190096
chr4	187629140	.	G	C	11983.599999999999	REJECT	NS=2;DP=314;DPB=355.0;AC=4;AN=4;AF=1.0;RO=0;AO=355;PRO=0.0;PAO=0.0;QR=0;QA=13618;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=173;SAR=182;SRP=0.0;SAP=3.50576;AB=0.0;ABP=0.0;RUN=1;RPP=4.38659;RPPR=0.0;RPL=185.0;RPR=170.0;EPP=3.06535;EPPR=0.0;DPRA=0.0;ODDS=54.8327;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991549;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.295;SOR=0.848	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.01:80:0:0:81:3096:-278.725,-21.9385,0.0:80:100:80:0,79:3318,236,0:1:.:1:.:.:.:-0.160002	1/1:128.01:274:0:0:274:10522:-946.432,-74.2041,0.0:274:100:274:0,274:11787,816,0:.:1:1:.:.:.:-0.00190096
chr4	187629497	.	G	A	12388.55	REJECT	NS=2;DP=326;DPB=371.0;AC=4;AN=4;AF=1.0;RO=0;AO=371;PRO=0.0;PAO=0.0;QR=0;QA=14229;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=170;SRP=0.0;SAP=8.63506;AB=0.0;ABP=0.0;RUN=1;RPP=12.8492;RPPR=0.0;RPL=165.0;RPR=206.0;EPP=12.8492;EPPR=0.0;DPRA=0.0;ODDS=59.8488;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.775;SOR=0.9585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:89:3400:-306.076,-24.1169,0.0:89:100:89:0,90:3754,270,0:1:.:1:.:.:.:-0.160002	1/1:129.501:282:0:0:282:10829:-974.03,-76.3621,0.0:282:100:282:0,282:12071,834,0:.:1:1:.:.:.:-0.00190096
chr4	187629538	.	C	T	13621.05	REJECT	NS=2;DP=357;DPB=411.0;AC=4;AN=4;AF=1.0;RO=0;AO=411;PRO=0.0;PAO=0.0;QR=0;QA=15774;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=222;SAR=189;SRP=0.0;SAP=8.76391;AB=0.0;ABP=0.0;RUN=1;RPP=3.26919;RPPR=0.0;RPL=202.0;RPR=209.0;EPP=8.08764;EPPR=0.0;DPRA=0.0;ODDS=71.0525;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997567;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9108;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.36;SOR=0.9025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:107:4087:-367.836,-28.9827,0.0:106:100:106:0,106:4217,317,0:1:.:1:.:.:.:-0.160002	1/1:129.501:304:0:0:304:11687:-1051.22,-82.3584,0.0:304:100:304:0,304:13133,912,0:.:1:1:.:.:.:-0.00190096
chr4	187629770	.	A	C	14324.3	REJECT	NS=2;DP=377;DPB=433.0;AC=4;AN=4;AF=1.0;RO=0;AO=433;PRO=0.0;PAO=0.0;QR=0;QA=16525;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=230;SAR=203;SRP=0.0;SAP=6.6662;AB=0.0;ABP=0.0;RUN=1;RPP=3.13567;RPPR=0.0;RPL=214.0;RPR=219.0;EPP=3.61711;EPPR=0.0;DPRA=0.0;ODDS=74.1536;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995381;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.955;SOR=0.8405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:112:4204:-378.366,-30.3294,0.0:110:100:110:0,108:4479,324,0:1:.:1:.:.:.:-0.160002	1/1:129.501:321:0:0:321:12321:-1108.2,-86.9336,0.0:321:100:321:0,321:13858,960,0:.:1:1:.:.:.:-0.00190096
chr5	1295243	.	G	A	4617.97	REJECT	NS=2;DP=332;DPB=384.0;AC=2;AN=4;AF=0.5;RO=194;AO=190;PRO=0.0;PAO=0.0;QR=6874;QA=6622;PQR=0.0;PQA=0.0;SRF=103;SRR=91;SAF=104;SAR=86;SRP=4.62211;SAP=6.71323;AB=0.494792;ABP=3.10078;RUN=1;RPP=5.25035;RPPR=3.18939;RPL=88.0;RPR=102.0;EPP=10.7362;EPPR=5.20416;DPRA=0.0;ODDS=256.433;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0515;PAIRED=1.0;PAIREDR=0.984536;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2525;Dels=0.0;FS=2.76;HaplotypeScore=39.2696;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.2055;QD=17.355;ReadPosRankSum=0.028;SOR=0.6135;ClippingRankSum=-0.76	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1565:99:45:1555:59:2011:-152.912,0.0,-112.276:57:58:99:39,55:1823,0,1222:1:.:1:.:.:.:-0.0516987	0/1:119.1565:280:149:5319:131:4611:-339.083,0.0,-402.788:131:47:280:149,131:4418,0,5104:.:1:1:.:.:.:0.101192
chr5	1296072	.	A	G	12382.4	REJECT	NS=2;DP=331;DPB=378.0;AC=4;AN=4;AF=1.0;RO=0;AO=378;PRO=0.0;PAO=0.0;QR=0;QA=14279;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=216;SAR=162;SRP=0.0;SAP=19.7617;AB=0.0;ABP=0.0;RUN=1;RPP=10.4553;RPPR=0.0;RPL=171.0;RPR=207.0;EPP=12.2017;EPPR=0.0;DPRA=0.0;ODDS=63.0088;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994709;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8276;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.62;SOR=1.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:94:3585:-322.751,-25.4893,0.0:91:100:91:0,89:3733,268,0:1:.:1:.:.:.:-0.0516987	1/1:129.501:284:0:0:284:10694:-961.951,-76.9032,0.0:284:100:284:0,284:12021,846,0:.:1:1:.:.:.:0.101192
chr5	1296486	.	A	G	18295.35	REJECT	NS=2;DP=486;DPB=548.0;AC=4;AN=4;AF=1.0;RO=0;AO=546;PRO=0.0;PAO=0.0;QR=0;QA=20808;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=278;SAR=268;SRP=0.0;SAP=3.40801;AB=0.0;ABP=0.0;RUN=1;RPP=3.15347;RPPR=0.0;RPL=276.0;RPR=270.0;EPP=6.58965;EPPR=0.0;DPRA=0.0;ODDS=79.78;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992674;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9649;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.74;SOR=0.829	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:121:4633:-416.93,-32.773,0.0:119:100:119:0,118:4746,354,0:1:.:1:.:.:.:-0.0516987	1/1:129.501:426:0:0:425:16175:-1454.27,-114.639,0.0:424:100:424:0,423:17955,1246,0:.:1:1:.:.:.:0.101192
chr5	1296759	.	C	T	13775.4	REJECT	NS=2;DP=511;DPB=580.0;AC=2;AN=4;AF=0.5;RO=135;AO=445;PRO=0.0;PAO=0.0;QR=5182;QA=17136;PQR=0.0;PQA=0.0;SRF=71;SRR=64;SAF=224;SAR=221;SRP=3.79846;SAP=3.05422;AB=0.767241;ABP=362.801;RUN=1;RPP=3.05422;RPPR=7.65886;RPL=221.0;RPR=224.0;EPP=3.60075;EPPR=5.72866;DPRA=0.0;ODDS=323.309;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993258;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5895;Dels=0.0;FS=2.0815;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0335;QD=25.69;ReadPosRankSum=0.792;SOR=0.726;ClippingRankSum=-0.748	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.787:134:58:2268:77:2949:-228.785,0.0,-167.503:76:57:134:57,76:2521,0,1883:1:.:1:.:.:.:-0.0516987	0/1:117.787:444:77:2914:368:14187:-1155.39,0.0,-141.56:367:83:444:77,366:14487,0,1907:.:1:1:.:.:.:0.101192
chr5	1297258	.	T	C	7992.675	REJECT	NS=2;DP=218;DPB=251.0;AC=4;AN=4;AF=1.0;RO=0;AO=249;PRO=0.0;PAO=0.0;QR=0;QA=9395;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=176;SAR=73;SRP=0.0;SAP=95.529;AB=0.0;ABP=0.0;RUN=1;RPP=69.0178;RPPR=0.0;RPL=81.0;RPR=168.0;EPP=4.06551;EPPR=0.0;DPRA=0.0;ODDS=43.6532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991968;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.6086;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.5;SOR=1.8905	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.2825:63:0:0:63:2386:-214.919,-17.0833,0.0:63:100:63:0,63:2623,189,0:1:.:1:.:.:.:-0.0516987	1/1:125.2825:186:0:0:186:7009:-630.542,-50.3342,0.0:185:100:185:0,184:7761,542,0:.:1:1:.:.:.:0.101192
chr5	1297918	.	T	C	6109.93	REJECT	NS=2;DP=166;DPB=192.0;AC=4;AN=4;AF=1.0;RO=0;AO=192;PRO=0.0;PAO=0.0;QR=0;QA=7221;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=98;SAR=94;SRP=0.0;SAP=3.19126;AB=0.0;ABP=0.0;RUN=1;RPP=5.9056;RPPR=0.0;RPL=88.0;RPR=104.0;EPP=49.335;EPPR=0.0;DPRA=0.0;ODDS=36.7581;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8698;MQMR=0.0;PAIRED=0.994792;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=59.92;QD=31.915;SOR=0.811	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.235:51:0:0:52:1951:-175.781,-14.0888,0.0:51:100:51:0,51:2169,153,0:1:.:1:.:.:.:-0.0516987	1/1:129.501:140:0:0:140:5270:-474.152,-37.8937,0.0:140:100:140:0,140:5836,406,0:.:1:1:.:.:.:0.101192
chr5	1298645	.	G	A	11932.7	REJECT	NS=2;DP=444;DPB=500.0;AC=2;AN=4;AF=0.5;RO=110;AO=389;PRO=0.0;PAO=0.0;QR=4178;QA=14842;PQR=0.0;PQA=0.0;SRF=68;SRR=42;SAF=202;SAR=187;SRP=16.355;SAP=4.26629;AB=0.778;ABP=338.65;RUN=1;RPP=3.01588;RPPR=28.5942;RPL=195.0;RPR=194.0;EPP=3.14985;EPPR=4.2737;DPRA=0.0;ODDS=238.946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.196;Dels=0.0;FS=7.2335;HaplotypeScore=4.8899;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2475;QD=27.565;ReadPosRankSum=0.842;SOR=0.458;ClippingRankSum=0.699	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4715:110:40:1517:72:2740:-216.254,0.0,-106.184:71:64:110:39,70:2584,0,1265:1:.:1:.:.:.:-0.0516987	0/1:117.4715:388:70:2661:317:12102:-983.641,0.0,-134.567:317:82:387:70,317:12320,0,1819:.:1:1:.:.:.:0.101192
chr5	1298782	.	C	T	1852.18	REJECT	NS=2;DP=474;DPB=545.0;AC=2;AN=4;AF=0.5;RO=440;AO=105;PRO=0.0;PAO=0.0;QR=16299;QA=3739;PQR=0.0;PQA=0.0;SRF=234;SRR=206;SAF=54;SAR=51;SRP=6.87947;SAP=3.19643;AB=0.192661;ABP=450.154;RUN=1;RPP=3.03098;RPPR=7.45195;RPL=53.0;RPR=52.0;EPP=3.03098;EPPR=4.60929;DPRA=0.0;ODDS=68.8944;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1905;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993182;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1595;Dels=0.0;FS=4.6185;HaplotypeScore=17.3931;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.56;QD=8.94;ReadPosRankSum=-0.123;SOR=0.9515;ClippingRankSum=-0.551	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0785:139:78:2839:62:2205:-160.562,0.0,-217.607:62:45:139:75,63:2354,0,4543:1:.:1:.:.:.:-0.0516987	0/1:120.0785:404:362:13460:43:1534:-30.3087,0.0,-1101.0:43:11:404:361,43:491,0,13804:.:1:1:.:.:.:0.101192
chr5	1298805	.	CT	C	1548.38	REJECT	NS=2;DP=563;DPB=534.333;AC=2;AN=4;AF=0.5;RO=442;AO=118;PRO=16.5;PAO=5.5;QR=15832;QA=3498;PQR=474.0;PQA=91.0;SRF=231;SRR=211;SAF=61;SAR=57;SRP=4.97543;SAP=3.30474;AB=0.209591;ABP=415.432;RUN=1;RPP=3.30474;RPPR=10.8708;RPL=57.0;RPR=61.0;EPP=3.08391;EPPR=3.02995;DPRA=0.0;ODDS=49.7031;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.8475;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995475;technology.ILLUMINA=1.0;END=1298806;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.055;FS=3.8;MLEAC=1;MLEAF=0.5;MQ=60.64;MQRankSum=0.453;QD=17.51;ReadPosRankSum=-1.31;SOR=1.002;ClippingRankSum=0.965	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:104,90:72:48:150:129.501:148:76:2706:69:1983:-138.417,0.0,-212.726:2682,0,4542:1:.:1:1:.:.:-0.0516987	0/1:404,74:61:13:446:160.002:417:366:13126:49:1515:-22.1921,0.0,-1091.82:.:.:.:1:1:.:.:0.101192
chr5	1299087	.	C	T	14676.0	REJECT	NS=2;DP=527;DPB=596.0;AC=2;AN=4;AF=0.5;RO=125;AO=470;PRO=0.0;PAO=0.0;QR=4682;QA=18184;PQR=0.0;PQA=0.0;SRF=67;SRR=58;SAF=241;SAR=229;SRP=4.41741;SAP=3.6756;AB=0.788591;ABP=434.157;RUN=1;RPP=3.08422;RPPR=3.02767;RPL=237.0;RPR=233.0;EPP=3.91585;EPPR=3.86152;DPRA=0.0;ODDS=185.574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993617;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.3905;Dels=0.0;FS=1.949;HaplotypeScore=8.8359;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6165;QD=26.75;ReadPosRankSum=0.0655;SOR=0.718;ClippingRankSum=-0.543	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:135:64:2392:72:2758:-211.358,0.0,-178.401:71:53:134:63,70:2576,0,2146:1:.:1:.:.:.:-0.0516987	0/1:129.501:458:61:2290:398:15426:-1263.01,0.0,-81.6259:397:87:458:61,397:15890,0,1171:.:1:1:.:.:.:0.101192
chr5	1299213	.	A	G	9469.16	REJECT	NS=2;DP=362;DPB=409.0;AC=2;AN=4;AF=0.5;RO=90;AO=318;PRO=0.0;PAO=0.0;QR=3392;QA=11925;PQR=0.0;PQA=0.0;SRF=35;SRR=55;SAF=106;SAR=212;SRP=12.6613;SAP=79.7357;AB=0.777506;ABP=276.589;RUN=1;RPP=18.7432;RPPR=4.55446;RPL=183.0;RPR=135.0;EPP=3.44733;EPPR=10.8276;DPRA=0.0;ODDS=143.079;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993711;PAIREDR=0.988889;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1115;Dels=0.0;FS=2.788;HaplotypeScore=4.8069;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.5145;QD=25.345;ReadPosRankSum=-0.245;SOR=1.027;ClippingRankSum=-0.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3405:90:46:1725:45:1697:-128.501,0.0,-130.621:45:50:90:44,45:1639,0,1583:1:.:1:.:.:.:-0.0516987	0/1:117.3405:316:44:1667:273:10228:-834.179,0.0,-64.1306:272:86:316:44,272:10454,0,908:.:1:1:.:.:.:0.101192
chr5	1299859	.	G	C	7413.285	PASS	DP=228;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.4575;Dels=0.0;FS=1.123;HaplotypeScore=8.9575;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.873;QD=26.485;ReadPosRankSum=-0.0215;SOR=0.5745;ClippingRankSum=0.056	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:42,63:105:99.0:2519,0,3200:63:60:105:1:.:.:.:.:.:-0.0516987	0/1:40,312:352:99.0:12364,0,569:312:89:352:.:1:.:.:.:.:0.101192
chr5	1299859	.	GGAG	CGAC	11689.8	REJECT	NS=2;DP=439;DPB=457.75;AC=2;AN=4;AF=0.5;RO=80;AO=356;PRO=4.0;PAO=31.0;QR=2988;QA=13368;PQR=152.0;PQA=1131.0;SRF=43;SRR=37;SAF=184;SAR=172;SRP=3.98746;SAP=3.88865;AB=0.810934;ABP=371.661;RUN=1;RPP=11.8182;RPPR=3.44459;RPL=159.0;RPR=197.0;EPP=7.13366;EPPR=5.72464;DPRA=0.0;ODDS=81.2218;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=2.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:101:42:1577:59:2209:-188.931,0.0,-118.89:59:58:101:.:.:1:.:.:.:-0.0516987	0/1:160.002:338:38:1411:297:11159:-987.848,0.0,-36.0983:297:89:335:.:.:1:.:.:.:0.101192
chr5	1299862	.	G	C	7311.785	PASS	DP=227;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.607;Dels=0.0;FS=0.373;HaplotypeScore=8.96;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.108;QD=29.355;ReadPosRankSum=-0.3775;SOR=0.623;ClippingRankSum=0.278	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:42,63:105:99.0:2554,0,3197:63:60:105:1:.:.:.:.:.:-0.0516987	0/1:42,306:349:99.0:12126,0,705:306:88:348:.:1:.:.:.:.:0.101192
chr5	1300025	.	G	T	2729.0299999999997	REJECT	NS=2;DP=517;DPB=582.0;AC=2;AN=4;AF=0.5;RO=447;AO=135;PRO=0.0;PAO=0.0;QR=17038;QA=5068;PQR=0.0;PQA=0.0;SRF=223;SRR=224;SAF=70;SAR=65;SRP=3.01516;SAP=3.41242;AB=0.231959;ABP=366.206;RUN=1;RPP=3.02638;RPPR=4.41423;RPL=67.0;RPR=68.0;EPP=3.02638;EPPR=4.41423;DPRA=0.0;ODDS=214.518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985185;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.074;Dels=0.0;FS=3.068;HaplotypeScore=11.7648;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.803;QD=11.38;ReadPosRankSum=0.217;SOR=0.5965;ClippingRankSum=-0.948	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:59:2242:70:2662:-204.613,0.0,-166.82:70:54:128:57,70:2561,0,2001:1:.:1:.:.:.:-0.0516987	0/1:129.501:453:388:14796:65:2406:-93.7521,0.0,-1208.08:65:14:453:388,65:1374,0,15182:.:1:1:.:.:.:0.101192
chr5	1300070	.	A	G	2716.025	REJECT	NS=2;DP=484;DPB=550.0;AC=2;AN=4;AF=0.5;RO=423;AO=127;PRO=0.0;PAO=0.0;QR=16132;QA=4845;PQR=0.0;PQA=0.0;SRF=185;SRR=238;SAF=65;SAR=62;SRP=17.4303;SAP=3.16418;AB=0.230909;ABP=348.93;RUN=1;RPP=3.84811;RPPR=8.60069;RPL=67.0;RPR=60.0;EPP=3.84811;EPPR=19.6891;DPRA=0.0;ODDS=146.033;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9858;PAIRED=0.984252;PAIREDR=0.997636;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1825;Dels=0.0;FS=3.951;HaplotypeScore=13.6975;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.7105;QD=11.275;ReadPosRankSum=-0.1675;SOR=0.69;ClippingRankSum=1.274	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.859:130:56:2107:75:2869:-222.692,0.0,-154.133:74:57:130:55,74:2650,0,1881:1:.:1:.:.:.:-0.0516987	0/1:118.859:419:367:14025:52:1976:-64.2702,0.0,-1147.9:52:12:419:367,52:963,0,14412:.:1:1:.:.:.:0.101192
chr5	1300310	.	G	T	10906.4	REJECT	NS=2;DP=409;DPB=461.0;AC=2;AN=4;AF=0.5;RO=103;AO=358;PRO=0.0;PAO=0.0;QR=3934;QA=13598;PQR=0.0;PQA=0.0;SRF=52;SRR=51;SAF=190;SAR=168;SRP=3.03138;SAP=5.94603;AB=0.776573;ABP=309.301;RUN=1;RPP=6.50407;RPPR=3.53736;RPL=191.0;RPR=167.0;EPP=9.22144;EPPR=6.5732;DPRA=0.0;ODDS=189.229;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994413;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.403;Dels=0.0;FS=0.79;HaplotypeScore=5.8178;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.264;QD=25.725;ReadPosRankSum=0.1195;SOR=0.7225;ClippingRankSum=0.379	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:50:1932:54:2039:-155.345,0.0,-145.715:53:51:103:50,53:1929,0,1821:1:.:1:.:.:.:-0.0516987	0/1:129.501:357:53:2002:304:11559:-942.987,0.0,-83.3972:304:85:357:53,304:11870,0,1175:.:1:1:.:.:.:0.101192
chr5	1300357	.	GTCAGCC	G	1148.77	REJECT	NS=2;DP=386;DPB=406.643;AC=2;AN=4;AF=0.5;RO=311;AO=72;PRO=79.5;PAO=37.5;QR=11852;QA=2620;PQR=2680.5;PQA=1156.5;SRF=172;SRR=139;SAF=34;SAR=38;SRP=10.6139;SAP=3.49285;AB=0.186528;ABP=332.467;RUN=1;RPP=3.13094;RPPR=4.1903;RPL=35.0;RPR=37.0;EPP=6.02623;EPPR=3.07314;DPRA=0.0;ODDS=21.2623;GTI=0;TYPE=del;CIGAR=1M6D7M;NUMALT=1;MEANALT=2.5;LEN=6;MQM=60.1389;MQMR=60.0;PAIRED=0.986111;PAIREDR=0.996785;technology.ILLUMINA=1.0;END=1300363;HOMLEN=8;HOMSEQ=TCAGCCTC;SVLEN=-6;SVTYPE=DEL;BaseQRankSum=1.336;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.908;QD=17.01;ReadPosRankSum=-0.214;SOR=0.657;ClippingRankSum=-0.479	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52,67:48:48:101:129.501:96:49:1867:42:1525:-110.437,0.0,-166.189:1857,0,2072:1:.:1:1:.:.:-0.0516987	0/1:294,60:45:13:323:92.3406:294:262:9985:30:1095:-10.1838,0.0,-922.049:.:.:.:1:1:.:.:0.101192
chr5	1300401	.	T	C	2189.56	REJECT	NS=2;DP=448;DPB=506.0;AC=2;AN=4;AF=0.5;RO=401;AO=104;PRO=0.0;PAO=0.0;QR=15454;QA=4061;PQR=0.0;PQA=0.0;SRF=222;SRR=179;SAF=55;SAR=49;SRP=13.0229;SAP=3.76196;AB=0.205534;ABP=384.108;RUN=1;RPP=3.09382;RPPR=5.87491;RPL=53.0;RPR=51.0;EPP=4.34659;EPPR=8.21425;DPRA=0.0;ODDS=101.835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0962;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.997506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.815;Dels=0.0;FS=1.392;HaplotypeScore=11.6442;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=0.9645;QD=10.38;ReadPosRankSum=-1.618;SOR=0.685;ClippingRankSum=-0.4	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6135:114:54:2067:61:2390:-184.306,0.0,-154.855:60:53:113:52,60:2176,0,1896:1:.:1:.:.:.:-0.0516987	0/1:117.6135:390:347:13387:43:1671:-44.6679,0.0,-1098.38:43:11:390:347,43:711,0,13819:.:1:1:.:.:.:0.101192
chr5	1300429	.	T	G	17203.15	REJECT	NS=2;DP=462;DPB=525.0;AC=4;AN=4;AF=1.0;RO=3;AO=522;PRO=0.0;PAO=0.0;QR=107;QA=19827;PQR=0.0;PQA=0.0;SRF=2;SRR=1;SAF=279;SAR=243;SRP=3.73412;SAP=8.40154;AB=0.0;ABP=0.0;RUN=1;RPP=12.5947;RPPR=3.73412;RPL=237.0;RPR=285.0;EPP=7.81915;EPPR=3.73412;DPRA=0.0;ODDS=82.264;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0192;MQMR=60.0;PAIRED=0.996169;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.306;Dels=0.0;FS=0.0;HaplotypeScore=10.6809;MLEAC=2;MLEAF=1.0;MQ=60.015;MQRankSum=-0.591;QD=29.785;ReadPosRankSum=-1.82;SOR=0.675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.206:124:0:0:125:4744:-426.915,-33.8517,0.0:124:100:124:0,124:4983,372,0:1:.:1:.:.:.:-0.0516987	1/1:124.206:400:3:107:397:15083:-1346.91,-98.6525,0.0:397:99:400:3,397:16747,1062,0:.:1:1:.:.:.:0.101192
chr5	1300584	.	C	G	2426.3599999999997	REJECT	NS=2;DP=529;DPB=598.0;AC=2;AN=4;AF=0.5;RO=475;AO=123;PRO=0.0;PAO=0.0;QR=18034;QA=4734;PQR=0.0;PQA=0.0;SRF=214;SRR=261;SAF=60;SAR=63;SRP=13.1088;SAP=3.16919;AB=0.205686;ABP=452.934;RUN=1;RPP=3.45166;RPPR=5.02634;RPL=64.0;RPR=59.0;EPP=12.3494;EPPR=3.12459;DPRA=0.0;ODDS=139.829;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995789;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8315;Dels=0.0;FS=0.6735;HaplotypeScore=16.5837;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.026;QD=9.535;ReadPosRankSum=1.701;SOR=0.6285;ClippingRankSum=0.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:135:67:2466:69:2658:-202.359,0.0,-185.073:69:51:135:65,69:2308,0,2215:1:.:1:.:.:.:-0.0516987	0/1:129.501:461:408:15568:54:2076:-61.6601,0.0,-1274.98:54:12:461:407,54:976,0,15911:.:1:1:.:.:.:0.101192
chr5	1302113	.	A	AC	1021.815	REJECT	NS=2;DP=30;DPB=41.0;AC=4;AN=4;AF=1.0;RO=0;AO=34;PRO=1.5;PAO=1.5;QR=0;QA=1182;PQR=52.5;PQA=52.5;SRF=0;SRR=0;SAF=25;SAR=9;SRP=0.0;SAP=19.3602;AB=0.0;ABP=0.0;RUN=1;RPP=4.03217;RPPR=0.0;RPL=15.0;RPR=19.0;EPP=3.26577;EPPR=0.0;DPRA=0.0;ODDS=9.36163;GTI=0;TYPE=ins;CIGAR=1M1I6M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=57.7647;MQMR=0.0;PAIRED=0.941176;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=1302113;HOMLEN=2;HOMSEQ=CC;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=58.42;QD=27.145;RPA=2,3;RU=C;SOR=1.795;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:30.8287:8:0:0:8:295:-26.609,-2.19064,0.0:7:100:7:0,7:249,21,0:1:.:1:.:.:.:-0.0516987	1/1:83.5879:26:0:0:26:887:-80.0544,-7.04248,0.0:26:100:26:11,38:1058,78,0:.:1:1:1:.:.:-1.49937
chr5	1302144	.	T	C	1342.38	REJECT	NS=2;DP=40;DPB=47.0;AC=4;AN=4;AF=1.0;RO=0;AO=47;PRO=0.0;PAO=0.0;QR=0;QA=1651;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=35;SAR=12;SRP=0.0;SAP=27.4509;AB=0.0;ABP=0.0;RUN=1;RPP=4.16534;RPPR=0.0;RPL=21.0;RPR=26.0;EPP=3.42611;EPPR=0.0;DPRA=0.0;ODDS=12.1847;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.1277;MQMR=0.0;PAIRED=0.893617;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=58.865;QD=28.085;SOR=1.981	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:44.4587:13:0:0:14:475:-42.5362,-3.41668,0.0:13:100:13:0,12:502,36,0:1:.:1:.:.:.:-0.0516987	1/1:99.0495:33:0:0:33:1176:-106.02,-8.93481,0.0:33:100:33:0,33:1282,90,0:.:1:1:.:.:.:-1.49937
chr5	1302914	.	G	A	3603.23	REJECT	NS=2;DP=99;DPB=117.0;AC=4;AN=4;AF=1.0;RO=0;AO=117;PRO=0.0;PAO=0.0;QR=0;QA=4337;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=57;SAR=60;SRP=0.0;SAP=3.17734;AB=0.0;ABP=0.0;RUN=1;RPP=3.47429;RPPR=0.0;RPL=56.0;RPR=61.0;EPP=47.5719;EPPR=0.0;DPRA=0.0;ODDS=26.7629;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991453;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.155;SOR=0.949	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:107.1125:34:0:0:36:1296:-116.872,-9.74791,0.0:34:100:34:0,33:1345,98,0:1:.:1:.:.:.:-0.0516987	1/1:129.501:81:0:0:81:3041:-273.814,-21.9542,0.0:81:100:81:0,81:3408,241,0:.:1:1:.:.:.:-1.49937
chr5	1303901	.	T	C	1635.72	REJECT	NS=2;DP=46;DPB=52.0;AC=4;AN=4;AF=1.0;RO=0;AO=52;PRO=0.0;PAO=0.0;QR=0;QA=1972;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=2;SRP=0.0;SAP=99.2232;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=26.0;RPR=26.0;EPP=3.67845;EPPR=0.0;DPRA=0.0;ODDS=11.2467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.31;SOR=4.7425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:40.92195:11:0:0:11:416:-37.7866,-3.00932,0.0:11:100:11:0,11:466,33,0:1:.:1:.:.:.:-3.40649	1/1:114.5085:41:0:0:41:1556:-140.299,-11.1347,0.0:41:100:41:0,41:1748,123,0:.:1:1:.:.:.:-3.47473
chr5	1306165	.	T	C	2916.505	REJECT	NS=2;DP=79;DPB=93.0;AC=4;AN=4;AF=1.0;RO=0;AO=93;PRO=0.0;PAO=0.0;QR=0;QA=3474;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=34;SAR=59;SRP=0.0;SAP=17.6035;AB=0.0;ABP=0.0;RUN=1;RPP=3.22044;RPPR=0.0;RPL=48.0;RPR=45.0;EPP=4.90158;EPPR=0.0;DPRA=0.0;ODDS=20.5554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7849;MQMR=0.0;PAIRED=0.989247;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=59.875;QD=30.95;SOR=1.311	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:82.1354:25:0:0:26:949:-85.6799,-7.05202,0.0:25:100:25:0,25:981,75,0:1:.:1:.:.:.:-3.40649	1/1:129.501:66:0:0:67:2525:-227.364,-18.1651,0.0:66:100:66:0,66:2780,196,0:.:1:1:.:.:.:-3.47473
chr5	1306281	.	A	AT	77.1781	REJECT	NS=2;DP=50;DPB=66.9565;AC=2;AN=2;AF=0.0;RO=25;AO=3;PRO=8.03333;PAO=6.03333;QR=913;QA=71;PQR=282.8;PQA=223.8;SRF=10;SRR=15;SAF=1;SAR=2;SRP=5.18177;SAP=3.73412;AB=0.075;ABP=65.7659;RUN=1;RPP=3.73412;RPPR=13.5202;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=5.18177;DPRA=0.0;ODDS=1.9031;GTI=1;TYPE=ins;CIGAR=1M1I22M;NUMALT=5;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.307791:10:6:220:0:0:-0.433947,-2.069,-20.344:0:0:10:.:.:1:.:.:.:-3.40649	./1:75.3988:40:19:693:3:71:-12.5773,-9.72,-73.8559:3:8:38:.:.:1:.:.:.:-3.47473
chr5	1306281	.	A	ATT	77.1781	REJECT	NS=2;DP=50;DPB=66.9565;AC=2;AN=2;AF=0.0;RO=25;AO=2;PRO=8.03333;PAO=5.03333;QR=913;QA=55;PQR=282.8;PQA=184.8;SRF=10;SRR=15;SAF=1;SAR=1;SRP=5.18177;SAP=3.0103;AB=0.05;ABP=73.366;RUN=1;RPP=7.35324;RPPR=13.5202;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=1.9031;GTI=1;TYPE=ins;CIGAR=1M2I22M;NUMALT=5;MEANALT=7.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.307791:10:6:220:0:0:-0.433947,-2.069,-20.344:0:0:10:.:.:1:.:.:.:-3.40649	./1:75.3988:40:19:693:2:55:-12.5773,-14.1329,-78.8016:2:5:38:.:.:1:.:.:.:-3.47473
chr5	1306281	.	A	ATTT	77.1781	REJECT	NS=2;DP=50;DPB=66.9565;AC=2;AN=2;AF=0.0;RO=25;AO=3;PRO=8.03333;PAO=5.03333;QR=913;QA=84;PQR=282.8;PQA=184.8;SRF=10;SRR=15;SAF=0;SAR=3;SRP=5.18177;SAP=9.52472;AB=0.06;ABP=87.0897;RUN=1;RPP=3.73412;RPPR=13.5202;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=5.18177;DPRA=0.0;ODDS=1.9031;GTI=1;TYPE=ins;CIGAR=1M3I22M;NUMALT=5;MEANALT=5.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.307791:10:6:220:1:16:-0.433947,-0.892726,-18.9051:1:10:10:.:.:1:.:.:.:-3.40649	./1:75.3988:40:19:693:2:68:-12.5773,-12.9596,-77.6186:2:5:38:.:.:1:.:.:.:-3.47473
chr5	1306281	.	AT	A	77.1781	REJECT	NS=2;DP=50;DPB=66.9565;AC=2;AN=3;AF=0.25;RO=25;AO=10;PRO=8.03333;PAO=4.03333;QR=913;QA=303;PQR=282.8;PQA=146.8;SRF=10;SRR=15;SAF=3;SAR=7;SRP=5.18177;SAP=6.48466;AB=0.2;ABP=42.0968;RUN=1;RPP=16.9077;RPPR=13.5202;RPL=9.0;RPR=1.0;EPP=3.87889;EPPR=5.18177;DPRA=0.0;ODDS=1.9031;GTI=1;TYPE=del;CIGAR=1M1D21M;NUMALT=5;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.725;FS=1.316;MLEAC=1;MLEAF=0.5;MQ=59.43;MQRankSum=-0.844;QD=1.16;RPA=17,16;RU=T;ReadPosRankSum=0.939;SOR=1.112;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.307791:10:6:220:1:34:-0.433947,-0.353904,-31.3798:1:10:10:.:.:.:.:1:.:.:.:-3.40649	0/1:87.1994:49:19:693:9:269:-12.5773,0.0,-100.246:11:26:42:34,13:106,0,465:.:1:1:.:.:.:-3.47473
chr5	1306281	.	ATT	A	77.1781	REJECT	NS=2;DP=50;DPB=66.9565;AC=2;AN=3;AF=0.25;RO=25;AO=5;PRO=8.03333;PAO=3.83333;QR=913;QA=156;PQR=282.8;PQA=139.0;SRF=10;SRR=15;SAF=4;SAR=1;SRP=5.18177;SAP=6.91895;AB=0.1;ABP=72.4974;RUN=1;RPP=3.44459;RPPR=13.5202;RPL=3.0;RPR=2.0;EPP=6.91895;EPPR=5.18177;DPRA=0.0;ODDS=1.9031;GTI=1;TYPE=del;CIGAR=1M2D20M;NUMALT=5;MEANALT=5.0;LEN=2;MQM=56.0;MQMR=60.0;PAIRED=0.8;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.307791:10:6:220:2:56:-0.433947,0.0,-47.0422:2:20:10:.:.:1:.:.:.:-3.40649	./1:75.3988:40:19:693:3:100:-12.5773,-13.6911,-115.546:3:8:38:.:.:1:.:.:.:-3.47473
chr5	1306331	.	T	C	1369.875	REJECT	NS=2;DP=43;DPB=50.0;AC=4;AN=4;AF=1.0;RO=1;AO=48;PRO=0.0;PAO=0.0;QR=16;QA=1676;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=9;SAR=39;SRP=5.18177;SAP=43.7254;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=24.0;RPR=24.0;EPP=3.19126;EPPR=5.18177;DPRA=0.0;ODDS=11.7481;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=58.0;MQMR=60.0;PAIRED=0.979167;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.535;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=59.71;MQRankSum=0.248;QD=30.415;ReadPosRankSum=1.436;SOR=2.766	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:40.5107:11:0:0:12:449:-38.3387,-3.22707,0.0:11:100:11:0,10:425,30,0:1:.:1:.:.:.:-3.40649	1/1:102.447:37:1:16:36:1227:-108.181,-7.81125,0.0:35:97:36:1,35:1365,99,0:.:1:1:.:.:.:-3.47473
chr5	1306765	.	C	G	9994.585	REJECT	NS=2;DP=267;DPB=302.0;AC=4;AN=4;AF=1.0;RO=0;AO=302;PRO=0.0;PAO=0.0;QR=0;QA=11466;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=151;SAR=151;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=8.6475;RPPR=0.0;RPL=165.0;RPR=137.0;EPP=18.225;EPPR=0.0;DPRA=0.0;ODDS=46.7755;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993377;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9637;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.695;SOR=1.0665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:67:0:0:68:2623:-236.222,-18.4393,0.0:67:100:67:0,66:2807,198,0:1:.:1:.:.:.:-3.40649	1/1:129.501:233:0:0:234:8843:-795.423,-63.3206,0.0:233:100:233:0,233:9762,674,0:.:1:1:.:.:.:-3.47473
chr5	1306796	.	G	A	4076.835	REJECT	NS=2;DP=243;DPB=276.0;AC=2;AN=4;AF=0.5;RO=126;AO=149;PRO=0.0;PAO=0.0;QR=4714;QA=5640;PQR=0.0;PQA=0.0;SRF=56;SRR=70;SAF=63;SAR=86;SRP=6.38815;SAP=10.7198;AB=0.539855;ABP=6.81824;RUN=1;RPP=4.19076;RPPR=14.6604;RPL=79.0;RPR=70.0;EPP=22.9616;EPPR=3.63072;DPRA=0.0;ODDS=138.56;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.249;Dels=0.0;FS=1.058;HaplotypeScore=3.8598;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5095;QD=21.16;ReadPosRankSum=-0.076;SOR=0.661;ClippingRankSum=1.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.3915:65:23:874:42:1588:-125.391,0.0,-61.1092:42:65:65:23,42:1570,0,745:1:.:1:.:.:.:-3.40649	0/1:120.3915:210:103:3840:107:4052:-308.045,0.0,-288.596:107:51:209:102,107:3935,0,3647:.:1:1:.:.:.:-3.47473
chr5	1307434	.	T	A	4456.09	REJECT	NS=2;DP=135;DPB=174.238;AC=0;AN=4;AF=0.0;RO=0;AO=7;PRO=20.3333;PAO=2.33333;QR=0;QA=270;PQR=707.0;PQA=82.0;SRF=0;SRR=0;SAF=0;SAR=7;SRP=0.0;SAP=18.2106;AB=0.0;ABP=0.0;RUN=1;RPP=18.2106;RPPR=0.0;RPL=0.0;RPR=7.0;EPP=18.2106;EPPR=0.0;DPRA=0.0;ODDS=31.766;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=2;MEANALT=5.5;LEN=1;MQM=40.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.945:40:0:0:2:78:-146.776,-145.623,-194.101:2:5:38:.:.:.:.:.:.:-3.40649	0/0:151.856:95:0:0:5:192:-310.235,-309.965,-465.202:5:6:89:.:.:.:.:.:.:-3.47473
chr5	1307434	.	T	TTA	4456.09	REJECT	NS=2;DP=135;DPB=174.238;AC=4;AN=4;AF=1.0;RO=0;AO=120;PRO=20.3333;PAO=37.3333;QR=0;QA=4502;PQR=707.0;PQA=1311.0;SRF=0;SRR=0;SAF=36;SAR=84;SRP=0.0;SAP=44.7026;AB=0.0;ABP=0.0;RUN=1;RPP=19.2963;RPPR=0.0;RPL=75.0;RPR=45.0;EPP=23.9288;EPPR=0.0;DPRA=0.0;ODDS=31.766;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=2;MEANALT=5.5;LEN=2;MQM=57.4583;MQMR=0.0;PAIRED=0.966667;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=1307434;HOMLEN=7;HOMSEQ=TATATAT;SVLEN=2;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=58.07;QD=30.92;RPA=3,4;RU=TA;SOR=1.542;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:136.945:40:0:0:36:1367:-146.776,-11.9207,0.0:32:79:41:16,28:.:.:.:1:1:.:.:-3.40649	1/1:125.428:112:0:0:84:3135:-310.235,-25.1893,0.0:84:94:103:20,90:4638,310,0:.:1:1:1:.:.:-3.47473
chr5	1307434	.	T	TTATATATATTTATATATATATGTATATACGTA	.	PASS	SOMATIC;AC=1;AN=4;END=1307434;HOMLEN=7;HOMSEQ=TATATAT;SVLEN=32;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:41,28:28:41:69:.:.:.:1:.:.:-3.47473
chr5	1307469	.	C	T	3278.98	REJECT	NS=2;DP=104;DPB=104.0;AC=4;AN=4;AF=1.0;RO=0;AO=104;PRO=0.0;PAO=0.0;QR=0;QA=3987;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=18;SAR=86;SRP=0.0;SAP=99.5573;AB=0.0;ABP=0.0;RUN=1;RPP=47.1914;RPPR=0.0;RPL=75.0;RPR=29.0;EPP=5.09825;EPPR=0.0;DPRA=0.0;ODDS=23.0742;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=52.5385;MQMR=0.0;PAIRED=0.971154;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=4;Dels=0.01;FS=0.0;HaplotypeScore=3.9994;MLEAC=2;MLEAF=1.0;MQ=51.73;QD=32.38;SOR=2.995	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:100.21:30:0:0:30:1149:-101.048,-8.14593,0.0:30:100:30:.:.:.:.:1:.:.:.:-3.40649	1/1:129.501:75:0:0:74:2838:-245.285,-19.9373,0.0:75:100:75:0,76:3042,211,0:.:1:1:.:.:.:-3.47473
chr5	1307483	.	C	T	1899.77	PASS	SOMATIC;DP=75;AC=1;AN=4;AF=0.5;MQ0=4;ALERT;BaseQRankSum=2.954;Dels=0.0;FS=2.462;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=44.25;MQRankSum=5.26;QD=25.33;ReadPosRankSum=5.21;SOR=0.168	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:22,53:75:99.0:1928,0,379:53:71:75:.:1:.:.:.:.:-3.47473
chr5	1307483	.	CG	TT	1693.67	REJECT	NS=2;DP=97;DPB=97.0;AC=2;AN=4;AF=0.5;RO=28;AO=69;PRO=0.0;PAO=0.0;QR=988;QA=2656;PQR=0.0;PQA=0.0;SRF=0;SRR=28;SAF=4;SAR=65;SRP=63.8115;SAP=120.112;AB=0.71134;ABP=40.6417;RUN=1;RPP=78.5712;RPPR=18.2106;RPL=59.0;RPR=10.0;EPP=55.9124;EPPR=18.2106;DPRA=0.0;ODDS=21.1133;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=49.6957;MQMR=29.1786;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:91.6938:26:7:255:19:738:-57.6273,0.0,-11.3244:19:73:26:.:.:1:.:.:.:-3.40649	0/1:142.677:71:21:733:50:1918:-144.696,0.0,-27.8392:50:70:71:.:.:1:.:.:.:-3.47473
chr5	1307484	.	G	T	1875.77	PASS	SOMATIC;DP=76;AC=1;AN=4;AF=0.5;MQ0=4;ALERT;BaseQRankSum=1.766;Dels=0.0;FS=2.44;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.5;MQ=44.01;MQRankSum=5.519;QD=24.68;ReadPosRankSum=5.409;SOR=0.154	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:23,53:76:99.0:1904,0,398:53:70:76:.:1:.:.:.:.:-3.47473
chr5	1307486	.	A	G	217.11	REJECT	NS=2;DP=103;DPB=103.0;AC=2;AN=4;AF=0.5;RO=75;AO=28;PRO=0.0;PAO=0.0;QR=2891;QA=1023;PQR=0.0;PQA=0.0;SRF=4;SRR=71;SAF=0;SAR=28;SRP=132.98;SAP=63.8115;AB=0.271845;ABP=49.581;RUN=1;RPP=18.2106;RPPR=56.5443;RPL=7.0;RPR=21.0;EPP=18.2106;EPPR=38.4777;DPRA=0.0;ODDS=20.0957;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=29.1786;MQMR=47.48;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=4;ALERT;BaseQRankSum=0.018;Dels=0.0;FS=2.43;HaplotypeScore=3.9629;MLEAC=1;MLEAF=0.5;MQ=43.42;MQRankSum=-4.856;QD=3.97;ReadPosRankSum=-3.404;SOR=1.732	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.2746:28:21:793:7:275:-10.8825,0.0,-58.8191:7:25:28:.:.:.:.:1:.:.:.:-3.40649	0/1:117.014:77:54:2098:21:748:-26.2693,0.0,-153.306:21:28:77:57,22:342,0,2019:.:1:1:.:.:.:-3.47473
chr5	1307494	.	A	G	1041.8	REJECT	NS=2;DP=101;DPB=101.0;AC=2;AN=4;AF=0.5;RO=46;AO=55;PRO=0.0;PAO=0.0;QR=1737;QA=2061;PQR=0.0;PQA=0.0;SRF=0;SRR=46;SAF=1;SAR=54;SRP=102.898;SAP=113.913;AB=0.544554;ABP=4.75178;RUN=1;RPP=105.701;RPPR=45.4956;RPL=53.0;RPR=2.0;EPP=97.8049;EPPR=45.4956;DPRA=0.0;ODDS=44.6073;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.1273;MQMR=26.8913;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=5;BaseQRankSum=-0.829;Dels=0.0;FS=0.0;HaplotypeScore=119.669;MLEAC=1;MLEAF=0.5;MQ=39.19;MQRankSum=5.779;QD=17.94;ReadPosRankSum=3.275;SOR=0.33	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:139.914:30:15:572:15:561:-40.4149,0.0,-26.9724:15:50:30:.:.:.:.:1:.:.:.:-3.40649	0/1:119.457:73:31:1165:40:1500:-106.405,0.0,-49.5418:41:56:73:33,43:1392,0,674:.:1:1:.:.:.:-3.47473
chr5	1307498	.	ACATT	A	737.686	REJECT	NS=2;DP=82;DPB=83.8333;AC=2;AN=2;AF=0.5;RO=0;AO=32;PRO=3.2;PAO=0.2;QR=0;QA=1149;PQR=110.333;PQA=7.0;SRF=0;SRR=0;SAF=0;SAR=32;SRP=0.0;SAP=72.4974;AB=0.390244;ABP=11.5903;RUN=1;RPP=72.4974;RPPR=0.0;RPL=0.0;RPR=32.0;EPP=72.4974;EPPR=0.0;DPRA=0.0;ODDS=2.80869;GTI=1;TYPE=del;CIGAR=1M4D1M;NUMALT=4;MEANALT=4.0;LEN=4;MQM=24.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=1.72;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=37.7;MQRankSum=0.246;QD=24.92;ReadPosRankSum=2.767;SOR=3.611	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.254143:23:0:0:10:343:-33.8555,-20.0126,-60.5165:10:43:23:.:.:.:.:1:.:.:.:-3.40649	./1:41.5618:62:0:0:22:806:-96.9603,-59.7827,-85.9913:37:62:60:8,53:2430,29,0:.:1:1:.:.:.:-3.47473
chr5	1307499	.	C	T	737.686	REJECT	NS=2;DP=82;DPB=83.8333;AC=0;AN=4;AF=0.0;RO=0;AO=14;PRO=3.2;PAO=0.2;QR=0;QA=411;PQR=110.333;PQA=7.0;SRF=0;SRR=0;SAF=0;SAR=14;SRP=0.0;SAP=33.4109;AB=0.170732;ABP=80.23;RUN=1;RPP=3.63072;RPPR=0.0;RPL=8.0;RPR=6.0;EPP=3.63072;EPPR=0.0;DPRA=0.0;ODDS=2.80869;GTI=1;TYPE=snp;CIGAR=1M1X4M;NUMALT=4;MEANALT=4.0;LEN=1;MQM=33.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:0.254143:23:0:0:5:158:-33.8555,-26.1061,-67.9592:5:22:23:.:.:.:.:.:.:-3.40649	0/0:54.1236:59:0:0:9:253:-96.9603,-81.6139,-111.553:9:15:59:.:.:.:.:.:.:-3.47473
chr5	1307499	.	C	CGTAT	947.73	PASS	SOMATIC;DP=71;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;BaseQRankSum=-0.409;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=37.29;MQRankSum=-1.085;QD=10.01;ReadPosRankSum=3.684;SOR=3.056	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:11,53:42:43.0:985,43,0:53:83:64:.:1:.:.:.:.:-3.47473
chr5	1307500	.	ATT	GTA	737.686	REJECT	NS=2;DP=82;DPB=83.8333;AC=0;AN=4;AF=0.0;RO=0;AO=6;PRO=3.2;PAO=3.2;QR=0;QA=223;PQR=110.333;PQA=110.333;SRF=0;SRR=0;SAF=0;SAR=6;SRP=0.0;SAP=16.0391;AB=0.0731707;ABP=132.769;RUN=1;RPP=16.0391;RPPR=0.0;RPL=6.0;RPR=0.0;EPP=16.0391;EPPR=0.0;DPRA=0.0;ODDS=2.80869;GTI=1;TYPE=complex;CIGAR=2M1X1M1X1M;NUMALT=4;MEANALT=4.0;LEN=6;MQM=59.3333;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:0.254143:23:0:0:1:27:-33.8555,-31.688,-31.4168:1:4:23:.:.:.:.:.:.:-3.40649	0/0:54.1236:59:0:0:5:196:-96.9603,-80.667,-79.3103:5:8:59:.:.:.:.:.:.:-3.47473
chr5	1307500	.	ATT	GTATATA	737.686	REJECT	NS=2;DP=82;DPB=83.8333;AC=2;AN=2;AF=0.5;RO=0;AO=30;PRO=3.2;PAO=3.2;QR=0;QA=1037;PQR=110.333;PQA=110.333;SRF=0;SRR=0;SAF=0;SAR=30;SRP=0.0;SAP=68.1545;AB=0.365854;ABP=15.8273;RUN=1;RPP=68.1545;RPPR=0.0;RPL=30.0;RPR=0.0;EPP=68.1545;EPPR=0.0;DPRA=0.0;ODDS=2.80869;GTI=1;TYPE=complex;CIGAR=2M4I2M1X1M;NUMALT=4;MEANALT=4.0;LEN=10;MQM=37.8667;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.254143:23:0:0:7:259:-33.8555,-13.8429,-11.9403:7:30:23:.:.:1:.:.:.:-3.40649	./1:54.1236:59:0:0:23:778:-96.9603,-37.1776,-31.1766:23:39:59:.:.:1:.:.:.:-3.47473
chr5	1307506	.	A	T	1190.79	REJECT	NS=2;DP=76;DPB=78.6667;AC=2;AN=4;AF=0.5;RO=14;AO=62;PRO=2.0;PAO=2.0;QR=481;QA=2395;PQR=69.5;PQA=69.5;SRF=0;SRR=14;SAF=0;SAR=62;SRP=33.4109;SAP=137.642;AB=0.815789;ABP=68.8402;RUN=1;RPP=3.15039;RPPR=33.4109;RPL=30.0;RPR=32.0;EPP=3.15039;EPPR=33.4109;DPRA=0.0;ODDS=2.60908;GTI=0;TYPE=snp;CIGAR=2M1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=30.7097;MQMR=49.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=5;BaseQRankSum=2.361;Dels=0.0;FS=0.0;HaplotypeScore=83.0413;MLEAC=1;MLEAF=0.5;MQ=34.36;MQRankSum=-2.325;QD=21.54;ReadPosRankSum=4.285;SOR=2.342	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.6383:21:4:122:17:655:-38.7055,0.0,-5.17144:17:81:21:.:.:.:.:1:.:.:.:-3.40649	0/1:71.9389:59:10:359:45:1740:-103.328,0.0,-14.4009:46:78:59:16,48:1407,0,299:.:1:1:.:.:.:-3.47473
chr5	1307516	.	A	G	2702.76	REJECT	NS=2;DP=124;DPB=124.0;AC=4;AN=4;AF=1.0;RO=0;AO=124;PRO=0.0;PAO=0.0;QR=0;QA=4406;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=124;SRP=0.0;SAP=272.273;AB=0.0;ABP=0.0;RUN=1;RPP=79.292;RPPR=0.0;RPL=29.0;RPR=95.0;EPP=79.292;EPPR=0.0;DPRA=0.0;ODDS=22.9351;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=34.1694;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=7;Dels=0.0;FS=0.0;HaplotypeScore=3.9629;MLEAC=2;MLEAF=1.0;MQ=34.35;QD=30.54;SOR=9.108	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:99.6054:30:0:0:30:1053:-78.055,-8.08555,0.0:30:100:30:.:.:.:.:1:.:.:.:-3.40649	1/1:129.501:97:0:0:94:3353:-247.769,-25.2046,0.0:97:99:97:1,100:3113,250,0:.:1:1:.:.:.:-3.47473
chr5	1307529	.	C	T	3056.77	PASS	SOMATIC;DP=92;AC=2;AN=4;AF=1.0;MQ0=6;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=33.34;QD=33.23;SOR=8.932	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,92:92:99.0:3085,250,0:92:100:92:.:1:.:.:.:.:-3.47473
chr5	1307529	.	CATG	TATT	2593.81	REJECT	NS=2;DP=112;DPB=112.25;AC=4;AN=4;AF=1.0;RO=0;AO=112;PRO=0.0;PAO=1.0;QR=0;QA=4220;PQR=0.0;PQA=35.0;SRF=0;SRR=0;SAF=0;SAR=112;SRP=0.0;SAP=246.215;AB=0.0;ABP=0.0;RUN=1;RPP=40.5458;RPPR=0.0;RPL=34.0;RPR=78.0;EPP=40.5458;EPPR=0.0;DPRA=0.0;ODDS=21.0938;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=32.5268;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:91.6093:27:0:0:27:1023:-69.4492,-7.28588,0.0:27:100:27:.:.:1:.:.:.:-3.40649	1/1:148.163:85:0:0:85:3197:-233.535,-23.101,0.0:85:100:85:.:.:1:.:.:.:-3.47473
chr5	1307532	.	G	T	3026.77	PASS	SOMATIC;DP=91;AC=2;AN=4;AF=1.0;MQ0=6;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=33.26;QD=33.26;SOR=8.909	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,91:91:99.0:3055,247,0:91:100:91:.:1:.:.:.:.:-3.47473
chr5	1307542	.	A	G	2346.28	REJECT	NS=2;DP=102;DPB=102.0;AC=4;AN=4;AF=1.0;RO=0;AO=102;PRO=0.0;PAO=0.0;QR=0;QA=3839;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=102;SRP=0.0;SAP=224.5;AB=0.0;ABP=0.0;RUN=1;RPP=17.4016;RPPR=0.0;RPL=38.0;RPR=64.0;EPP=17.4016;EPPR=0.0;DPRA=0.0;ODDS=20.4438;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=32.4216;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=6;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=33.09;QD=31.96;SOR=8.688	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:88.7864:26:0:0:26:951:-65.6918,-7.00358,0.0:26:100:26:.:.:.:.:1:.:.:.:-3.40649	1/1:129.501:79:0:0:76:2888:-204.73,-20.5005,0.0:79:100:79:0,82:2649,219,0:.:1:1:.:.:.:-3.47473
chr5	1307555	.	C	T	2743.77	PASS	SOMATIC;DP=79;AC=2;AN=4;AF=1.0;MQ0=3;Dels=0.0;FS=0.0;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.0;MQ=33.71;QD=34.73;SOR=8.688	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,79:79:99.0:2772,226,0:79:100:79:.:1:.:.:.:.:-3.47473
chr5	1307555	.	CATG	TATT	1872.17	REJECT	NS=2;DP=102;DPB=102.0;AC=4;AN=4;AF=1.0;RO=0;AO=101;PRO=0.0;PAO=0.0;QR=0;QA=3919;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=101;SRP=0.0;SAP=222.329;AB=0.0;ABP=0.0;RUN=1;RPP=213.729;RPPR=0.0;RPL=100.0;RPR=1.0;EPP=213.729;EPPR=0.0;DPRA=0.0;ODDS=20.4712;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.5;LEN=4;MQM=32.505;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:88.9053:26:0:0:26:1011:-67.1318,-7.01547,0.0:26:100:26:.:.:1:.:.:.:-3.40649	1/1:139.162:76:0:0:75:2908:-207.289,-20.251,0.0:75:100:75:.:.:1:.:.:.:-3.47473
chr5	1307558	.	G	T	2739.77	PASS	SOMATIC;DP=79;AC=2;AN=4;AF=1.0;MQ0=3;Dels=0.0;FS=0.0;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.0;MQ=33.71;QD=34.68;SOR=8.688	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,79:79:99.0:2768,226,0:79:100:79:.:1:.:.:.:.:-3.47473
chr5	1307568	.	A	G	1851.62	REJECT	NS=2;DP=102;DPB=102.0;AC=4;AN=4;AF=1.0;RO=0;AO=102;PRO=0.0;PAO=0.0;QR=0;QA=4005;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=102;SRP=0.0;SAP=224.5;AB=0.0;ABP=0.0;RUN=1;RPP=224.5;RPPR=0.0;RPL=102.0;RPR=0.0;EPP=224.5;EPPR=0.0;DPRA=0.0;ODDS=20.4708;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=32.4216;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=2;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=33.92;QD=28.42;SOR=8.688	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:88.9035:26:0:0:26:1007:-67.0437,-7.01529,0.0:26:100:26:.:.:.:.:1:.:.:.:-3.40649	1/1:129.501:77:0:0:76:2998:-210.234,-20.5215,0.0:77:100:77:0,78:2760,226,0:.:1:1:.:.:.:-3.47473
chr5	1307581	.	C	T	1823.77	PASS	SOMATIC;DP=45;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=39.41;QD=31.93;SOR=7.658	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,45:45:99.0:1852,132,0:45:100:45:.:1:.:.:.:.:-3.47473
chr5	1307581	.	CATG	TATT	1232.53	REJECT	NS=2;DP=55;DPB=55.0;AC=4;AN=4;AF=1.0;RO=0;AO=55;PRO=0.0;PAO=0.0;QR=0;QA=2147;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=55;SRP=0.0;SAP=122.441;AB=0.0;ABP=0.0;RUN=1;RPP=122.441;RPPR=0.0;RPL=55.0;RPR=0.0;EPP=122.441;EPPR=0.0;DPRA=0.0;ODDS=10.5641;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=38.7818;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:45.8793:10:0:0:10:392:-31.5857,-2.71286,0.0:10:100:10:.:.:1:.:.:.:-3.40649	1/1:138.235:45:0:0:45:1755:-141.337,-12.1818,0.0:45:100:45:.:.:1:.:.:.:-3.47473
chr5	1307584	.	G	T	1818.77	PASS	SOMATIC;DP=45;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=39.41;QD=33.1;SOR=7.658	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,45:45:99.0:1847,132,0:45:100:45:.:1:.:.:.:.:-3.47473
chr5	1307603	.	C	T	61.74	PASS	SOMATIC;DP=2;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=52.61;QD=30.87;SOR=2.303	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,2:2:6.0:89,6,0:2:100:2:.:1:.:.:.:.:-3.47473
chr5	1307603	.	CATG	TATT	55.0825	REJECT	SOMATIC;NS=1;DP=2;DPB=2.0;AC=2;AN=4;AF=1.0;RO=0;AO=2;PRO=0.0;PAO=0.0;QR=0;QA=78;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=2;SRP=0.0;SAP=7.35324;AB=0.0;ABP=0.0;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=5.92187;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=52.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-3.40649	1/1:25.7249:2:0:0:2:78:-7.31327,-0.571834,0.0:2:100:2:.:.:1:.:.:.:-3.47473
chr5	1307606	.	G	T	100.28	PASS	SOMATIC;DP=3;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=55.18;QD=33.43;SOR=2.833	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,3:3:9.0:128,9,0:3:100:3:.:1:.:.:.:.:-3.47473
chr5	1307616	.	A	G	44.0299	REJECT	SOMATIC;NS=1;DP=6;DPB=6.0;AC=1;AN=4;AF=0.5;RO=3;AO=3;PRO=0.0;PAO=0.0;QR=116;QA=119;PQR=0.0;PQA=0.0;SRF=0;SRR=3;SAF=0;SAR=3;SRP=9.52472;SAP=9.52472;AB=0.5;ABP=3.0103;RUN=1;RPP=9.52472;RPPR=9.52472;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=9.52472;DPRA=0.0;ODDS=9.80822;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=54.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.537;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=0.406;QD=14.46;ReadPosRankSum=1.537;SOR=0.693	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-3.40649	0/1:69.62215:6:3:116:3:119:-9.11222,0.0,-8.96892:3:50:6:3,3:115,0,112:.:1:1:.:.:.:-3.47473
chr5	1307621	.	C	T	83.77	PASS	SOMATIC;DP=6;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.406;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=0.406;QD=13.96;ReadPosRankSum=-1.537;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:3,3:6:99.0:112,0,111:3:50:6:.:1:.:.:.:.:-3.47473
chr5	1307621	.	CGTA	TGTT	33.4651	REJECT	SOMATIC;NS=1;DP=6;DPB=6.0;AC=1;AN=4;AF=0.5;RO=3;AO=3;PRO=0.0;PAO=0.0;QR=118;QA=106;PQR=0.0;PQA=0.0;SRF=0;SRR=3;SAF=0;SAR=3;SRP=9.52472;SAP=9.52472;AB=0.5;ABP=3.0103;RUN=1;RPP=9.52472;RPPR=9.52472;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=9.52472;DPRA=0.0;ODDS=7.70513;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=60.0;MQMR=54.6667;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-3.40649	0/1:33.0193:6:3:118:3:106:-8.05557,0.0,-9.02174:3:50:6:.:.:1:.:.:.:-3.47473
chr5	1307624	.	A	T	76.77	PASS	SOMATIC;DP=6;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.988;Dels=0.0;FS=0.0;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=0.406;QD=12.79;ReadPosRankSum=-1.537;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:3,3:6:99.0:105,0,116:3:50:6:.:1:.:.:.:.:-3.47473
chr5	1307629	.	C	T	236.84	PASS	SOMATIC;DP=6;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;Dels=0.0;FS=0.0;HaplotypeScore=1.9996;MLEAC=2;MLEAF=1.0;MQ=57.64;QD=26.12;SOR=3.912	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,6:6:18.0:265,18,0:6:100:6:.:1:.:.:.:.:-3.47473
chr5	1307629	.	CATGTA	TACGTG	105.385	REJECT	NS=2;DP=7;DPB=9.66667;AC=2;AN=3;AF=0.5;RO=0;AO=3;PRO=0.0;PAO=0.0;QR=0;QA=106;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=3;SRP=0.0;SAP=9.52472;AB=0.5;ABP=3.0103;RUN=1;RPP=9.52472;RPPR=0.0;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=0.0;DPRA=0.0;ODDS=0.0;GTI=0;TYPE=complex;CIGAR=1X1M1X2M1X;NUMALT=2;MEANALT=3.0;LEN=6;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:1.24579:1:0:0:0:0:0.0,0.0,0.0:0:0:0:.:.:1:.:.:.:-3.40649	./1:34.7262:6:0:0:3:106:-15.3519,-6.43737,-5.60726:3:60:5:.:.:1:.:.:.:-3.47473
chr5	1307629	.	CATGTA	TATTTATATACGTG	105.385	REJECT	NS=2;DP=7;DPB=9.66667;AC=2;AN=2;AF=0.25;RO=0;AO=2;PRO=0.0;PAO=0.0;QR=0;QA=77;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=2;SRP=0.0;SAP=7.35324;AB=0.333333;ABP=4.45795;RUN=1;RPP=3.0103;RPPR=0.0;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=0.0;GTI=0;TYPE=complex;CIGAR=1X2M8I2M1X;NUMALT=2;MEANALT=3.0;LEN=14;MQM=52.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.24579:1:0:0:0:0:0.0,0.0,0.0:0:0:0:.:.:1:.:.:.:-3.40649	./1:34.7262:6:0:0:2:77:-15.3519,-8.91452,-8.36075:2:40:5:.:.:1:.:.:.:-3.47473
chr5	1307631	.	T	C	80.77	PASS	SOMATIC;DP=6;AC=1;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=-1.537;Dels=0.0;FS=0.0;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=0.406;QD=13.46;ReadPosRankSum=-1.537;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:3,3:6:99.0:109,0,115:3:50:6:.:1:.:.:.:.:-3.47473
chr5	1307634	.	A	G	169.78	PASS	SOMATIC;DP=6;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.736;Dels=0.0;FS=0.0;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=0.736;QD=28.3;ReadPosRankSum=0.736;SOR=2.303	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	0/1:1,5:6:26.0:198,0,26:5:83:6:.:1:.:.:.:.:-3.47473
chr5	1307983	.	T	A	17.61	LowQual	SOMATIC;DP=1;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=17.61;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.40649	1/1:0,1:1:3.0:44,3,0:1:100:1:.:1:.:.:.:.:-3.47473
chr5	1308005	.	T	TTATATATG	52.2065	REJECT	SOMATIC;NS=1;DP=2;DPB=3.6;AC=2;AN=4;AF=1.0;RO=0;AO=2;PRO=0.0;PAO=0.0;QR=0;QA=74;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.0;ABP=0.0;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=5.92177;GTI=0;TYPE=ins;CIGAR=1M8I9M;NUMALT=1;MEANALT=1.0;LEN=8;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-3.40649	1/1:25.7198:2:0:0:2:74:-7.02567,-0.571792,0.0:2:100:2:.:.:1:.:.:.:-3.47473
chr5	1309168	.	T	C	20612.25	REJECT	NS=2;DP=549;DPB=631.0;AC=4;AN=4;AF=1.0;RO=0;AO=631;PRO=0.0;PAO=0.0;QR=0;QA=23902;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=286;SAR=345;SRP=0.0;SAP=14.9895;AB=0.0;ABP=0.0;RUN=1;RPP=3.7846;RPPR=0.0;RPL=323.0;RPR=308.0;EPP=17.5499;EPPR=0.0;DPRA=0.0;ODDS=105.246;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99683;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.61;SOR=0.885	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:161:0:0:162:6103:-549.068,-43.8328,0.0:161:100:161:0,160:6543,479,0:1:.:1:.:.:.:-0.437475	1/1:129.501:468:0:0:469:17799:-1600.73,-126.957,0.0:468:100:468:0,467:19827,1382,0:.:1:1:.:.:.:-0.0139599
chr5	1309754	.	G	A	303.3975	REJECT	NS=2;DP=73;DPB=84.0;AC=2;AN=4;AF=0.5;RO=66;AO=18;PRO=0.0;PAO=0.0;QR=2511;QA=697;PQR=0.0;PQA=0.0;SRF=36;SRR=30;SAF=10;SAR=8;SRP=4.19474;SAP=3.49285;AB=0.214286;ABP=62.5707;RUN=1;RPP=7.35324;RPPR=4.19474;RPL=12.0;RPR=6.0;EPP=7.35324;EPPR=4.19474;DPRA=0.0;ODDS=37.29;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.944444;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4265;Dels=0.0;FS=3.4865;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3475;QD=7.895;ReadPosRankSum=0.126;SOR=1.3095;ClippingRankSum=1.267	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:21:13:495:8:314:-22.6639,0.0,-39.027:8:38:21:13,8:288,0,493:1:.:1:.:.:.:-0.437475	0/1:119.754:63:53:2016:10:383:-17.4168,0.0,-164.503:10:16:63:53,10:244,0,2061:.:1:1:.:.:.:-0.0139599
chr5	1309904	.	G	A	2622.295	REJECT	NS=2;DP=72;DPB=81.0;AC=4;AN=4;AF=1.0;RO=0;AO=81;PRO=0.0;PAO=0.0;QR=0;QA=3018;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=28;SAR=53;SRP=0.0;SAP=19.7655;AB=0.0;ABP=0.0;RUN=1;RPP=3.68051;RPPR=0.0;RPL=38.0;RPR=43.0;EPP=10.7579;EPPR=0.0;DPRA=0.0;ODDS=15.59;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6049;MQMR=0.0;PAIRED=0.987654;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=59.695;QD=28.35;SOR=1.2445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:59.35335:17:0:0:18:668:-60.3931,-4.89561,0.0:17:100:17:0,17:699,51,0:1:.:1:.:.:.:-0.437475	1/1:129.501:63:0:0:63:2350:-211.669,-17.0729,0.0:63:100:63:0,63:2609,184,0:.:1:1:.:.:.:-0.0139599
chr5	1310152	.	G	A	9583.27	REJECT	NS=2;DP=258;DPB=293.0;AC=4;AN=4;AF=1.0;RO=0;AO=293;PRO=0.0;PAO=0.0;QR=0;QA=11205;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=255;SAR=38;SRP=0.0;SAP=351.995;AB=0.0;ABP=0.0;RUN=1;RPP=59.1054;RPPR=0.0;RPL=103.0;RPR=190.0;EPP=6.93081;EPPR=0.0;DPRA=0.0;ODDS=46.7262;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989761;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.445;SOR=3.7465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:66:0:0:68:2550:-229.632,-18.4179,0.0:66:100:66:0,64:2637,192,0:1:.:1:.:.:.:-0.299514	1/1:129.501:224:0:0:225:8655:-778.544,-60.9299,0.0:224:100:224:0,224:9603,662,0:.:1:1:.:.:.:-0.0139599
chr5	1311105	.	GA	G	7747.675	REJECT	NS=2;DP=274;DPB=313.824;AC=4;AN=4;AF=1.0;RO=7;AO=268;PRO=54.0;PAO=65.0;QR=249;QA=9700;PQR=1823.0;PQA=2246.0;SRF=3;SRR=4;SAF=85;SAR=183;SRP=3.32051;SAP=80.8268;AB=0.0;ABP=0.0;RUN=1;RPP=13.5112;RPPR=5.80219;RPL=152.0;RPR=116.0;EPP=34.1563;EPPR=10.7656;DPRA=0.0;ODDS=29.0046;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996269;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9635;FS=3.6675;MLEAC=2;MLEAF=1.0;MQ=60.06;MQRankSum=0.313;QD=23.89;RPA=10,9;RU=A;ReadPosRankSum=-0.414;SOR=0.9165;STR;ClippingRankSum=0.665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:112.503:62:2:75:55:1970:-174.182,-8.91529,0.0:59:96:61:2,63:1732,138,0:1:.:1:.:.:.:-0.299514	1/1:129.501:244:5:174:213:7730:-714.022,-45.9457,0.0:219:98:224:5,226:6785,547,0:.:1:1:.:.:.:-0.0139599
chr5	1311198	.	C	T	10940.099999999999	REJECT	NS=2;DP=299;DPB=334.0;AC=4;AN=4;AF=1.0;RO=0;AO=333;PRO=0.0;PAO=0.0;QR=0;QA=12469;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=126;SRP=0.0;SAP=45.7942;AB=0.0;ABP=0.0;RUN=1;RPP=39.6906;RPPR=0.0;RPL=204.0;RPR=129.0;EPP=5.36436;EPPR=0.0;DPRA=0.0;ODDS=48.0446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996997;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7901;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.78;SOR=1.1455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:69:0:0:70:2701:-243.253,-18.9905,0.0:69:100:69:0,68:2890,205,0:1:.:1:.:.:.:-0.299514	1/1:129.501:264:0:0:263:9768:-878.596,-71.1302,0.0:263:100:263:0,263:10813,759,0:.:1:1:.:.:.:-0.0139599
chr5	1311693	.	T	C	12174.9	REJECT	NS=2;DP=323;DPB=370.0;AC=4;AN=4;AF=1.0;RO=0;AO=370;PRO=0.0;PAO=0.0;QR=0;QA=13983;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=178;SRP=0.0;SAP=4.16059;AB=0.0;ABP=0.0;RUN=1;RPP=3.1042;RPPR=0.0;RPL=187.0;RPR=183.0;EPP=5.35784;EPPR=0.0;DPRA=0.0;ODDS=62.2787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.91;SOR=0.7785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9365:92:0:0:93:3424:-308.224,-25.1722,0.0:92:100:92:0,92:3619,276,0:1:.:1:.:.:.:-0.299514	1/1:124.9365:277:0:0:277:10559:-949.785,-75.0208,0.0:277:100:277:0,277:11843,828,0:.:1:1:.:.:.:-0.0139599
chr5	1312020	.	T	C	14344.8	REJECT	NS=2;DP=384;DPB=433.0;AC=4;AN=4;AF=1.0;RO=0;AO=432;PRO=0.0;PAO=0.0;QR=0;QA=16374;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=237;SAR=195;SRP=0.0;SAP=11.8771;AB=0.0;ABP=0.0;RUN=1;RPP=8.15749;RPPR=0.0;RPL=200.0;RPR=232.0;EPP=11.8771;EPPR=0.0;DPRA=0.0;ODDS=65.4554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993056;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9628;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.71;SOR=0.959	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:98:3700:-333.056,-26.5518,0.0:97:100:97:0,97:3861,291,0:1:.:1:.:.:.:-0.299514	1/1:129.501:335:0:0:334:12674:-1139.86,-90.3751,0.0:334:100:334:0,334:14054,972,0:.:1:1:.:.:.:-0.0139599
chr5	1312457	.	G	A	10576.45	REJECT	NS=2;DP=279;DPB=319.0;AC=4;AN=4;AF=1.0;RO=0;AO=318;PRO=0.0;PAO=0.0;QR=0;QA=12233;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=165;SAR=153;SRP=0.0;SAP=3.99361;AB=0.0;ABP=0.0;RUN=1;RPP=11.8601;RPPR=0.0;RPL=141.0;RPR=177.0;EPP=15.0558;EPPR=0.0;DPRA=0.0;ODDS=54.2527;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987421;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.525;SOR=0.7455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.658:78:0:0:80:3085:-277.754,-21.6866,0.0:78:100:78:0,76:3158,229,0:1:.:1:.:.:.:-0.299514	1/1:124.658:239:0:0:238:9148:-822.89,-64.4538,0.0:238:100:238:0,238:10237,707,0:.:1:1:.:.:.:-0.0139599
chr5	1312935	.	T	C	4171.62	REJECT	NS=2;DP=147;DPB=168.0;AC=4;AN=4;AF=1.0;RO=0;AO=168;PRO=0.0;PAO=0.0;QR=0;QA=5319;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=166;SAR=2;SRP=0.0;SAP=350.653;AB=0.0;ABP=0.0;RUN=1;RPP=6.31921;RPPR=0.0;RPL=92.0;RPR=76.0;EPP=8.18047;EPPR=0.0;DPRA=0.0;ODDS=30.3869;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.1131;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=59.035;QD=33.38;SOR=7.368	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:115.159:39:0:0:42:1316:-118.597,-11.3218,0.0:39:100:39:0,37:1301,109,0:1:.:1:.:.:.:-0.299514	1/1:129.501:126:0:0:126:4003:-357.644,-33.8185,0.0:126:100:126:0,126:4106,307,0:.:1:1:.:.:.:-0.0139599
chr5	1312987	.	G	A	1719.81	REJECT	NS=2;DP=127;DPB=244.0;AC=0;AN=4;AF=0.0;RO=9;AO=9;PRO=38.8333;PAO=19.4333;QR=338;QA=199;PQR=1370.57;PQA=659.967;SRF=6;SRR=3;SAF=0;SAR=9;SRP=5.18177;SAP=22.5536;AB=0.0708661;ABP=206.154;RUN=1;RPP=14.8328;RPPR=22.5536;RPL=1.0;RPR=8.0;EPP=14.8328;EPPR=5.18177;DPRA=0.0;ODDS=11.2206;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=5;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:48.6718:33:2:76:4:102:-48.8927,-76.4662,-443.39:4:15:27:.:.:.:.:.:.:-0.299514	0/0:160.002:94:7:262:5:97:-136.736,-224.157,-1245.27:5:7:74:.:.:.:.:.:.:-0.0139599
chr5	1312987	.	G	GA	1719.81	REJECT	NS=2;DP=127;DPB=244.0;AC=2;AN=2;AF=0.5;RO=9;AO=24;PRO=38.8333;PAO=39.5833;QR=338;QA=706;PQR=1370.57;PQA=1399.82;SRF=6;SRR=3;SAF=12;SAR=12;SRP=5.18177;SAP=3.0103;AB=0.188976;ABP=109.72;RUN=1;RPP=20.744;RPPR=22.5536;RPL=5.0;RPR=19.0;EPP=3.37221;EPPR=5.18177;DPRA=0.0;ODDS=11.2206;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=5;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.532;FS=1.201;MLEAC=1;MLEAF=0.5;MQ=57.22;MQRankSum=-0.702;QD=10.4;RPA=14;RU=A;ReadPosRankSum=-0.287;SOR=0.471;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:48.6718:33:2:76:5:144:-48.8927,-24.8591,-28.7397:5:19:27:.:.:.:.:1:.:.:.:-0.299514	./1:129.501:128:7:262:19:562:-136.736,-67.3022,-81.7239:22:26:84:13,25:1774,847,2147483647:.:1:1:.:.:.:-0.0139599
chr5	1312987	.	G	GAA	1719.81	REJECT	NS=2;DP=127;DPB=244.0;AC=2;AN=2;AF=0.5;RO=9;AO=45;PRO=38.8333;PAO=39.9167;QR=338;QA=1335;PQR=1370.57;PQA=1411.82;SRF=6;SRR=3;SAF=24;SAR=21;SRP=5.18177;SAP=3.44459;AB=0.354331;ABP=26.4177;RUN=1;RPP=76.4061;RPPR=22.5536;RPL=3.0;RPR=42.0;EPP=4.21667;EPPR=5.18177;DPRA=0.0;ODDS=11.2206;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=5;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.8845;FS=4.0955;MLEAC=1;MLEAF=0.5;MQ=58.485;MQRankSum=-1.3255;QD=15.32;RPA=14;RU=A;ReadPosRankSum=-0.757;SOR=0.5405;STR;ClippingRankSum=0.794	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:25.8359:31:2:76:10:265:-48.8927,-6.39741,-8.12965:18:63:28:3,26:729,3,0:1:.:1:.:.:.:-0.299514	./1:129.501:128:7:262:35:1070:-136.736,-25.921,-36.0295:45:53:84:13,56:1774,251,381:.:1:1:.:.:.:-0.0139599
chr5	1312987	.	G	GAAA	1719.81	REJECT	NS=2;DP=127;DPB=244.0;AC=0;AN=4;AF=0.0;RO=9;AO=7;PRO=38.8333;PAO=39.9167;QR=338;QA=187;PQR=1370.57;PQA=1411.82;SRF=6;SRR=3;SAF=3;SAR=4;SRP=5.18177;SAP=3.32051;AB=0.0551181;ABP=221.337;RUN=1;RPP=10.7656;RPPR=22.5536;RPL=1.0;RPR=6.0;EPP=3.32051;EPPR=5.18177;DPRA=0.0;ODDS=11.2206;GTI=0;TYPE=ins;CIGAR=1M3I20M;NUMALT=5;MEANALT=14.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:48.6718:33:2:76:3:80:-48.8927,-21.1638,-24.7637:3:11:27:.:.:.:.:.:.:-0.299514	0/0:160.002:94:7:262:4:107:-136.736,-104.188,-122.634:4:5:74:.:.:.:.:.:.:-0.0139599
chr5	1313002	.	G	AAA	1719.81	REJECT	NS=2;DP=127;DPB=244.0;AC=0;AN=4;AF=0.0;RO=9;AO=7;PRO=38.8333;PAO=26.3167;QR=338;QA=98;PQR=1370.57;PQA=907.017;SRF=6;SRR=3;SAF=7;SAR=0;SRP=5.18177;SAP=18.2106;AB=0.0551181;ABP=221.337;RUN=1;RPP=3.32051;RPPR=22.5536;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=5.18177;DPRA=0.0;ODDS=11.2206;GTI=0;TYPE=complex;CIGAR=1M2I14M1X5M;NUMALT=5;MEANALT=14.0;LEN=23;MQM=54.1429;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:48.6718:33:2:76:3:42:-48.8927,-51.6977,-342.129:3:11:27:.:.:.:.:.:.:-0.299514	0/0:160.002:94:7:262:4:56:-136.736,-179.4,-983.854:4:5:74:.:.:.:.:.:.:-0.0139599
chr5	1313701	.	A	G	13806.3	REJECT	NS=2;DP=367;DPB=416.0;AC=4;AN=4;AF=1.0;RO=0;AO=416;PRO=0.0;PAO=0.0;QR=0;QA=15807;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=189;SAR=227;SRP=0.0;SAP=10.5478;AB=0.0;ABP=0.0;RUN=1;RPP=7.10269;RPPR=0.0;RPL=194.0;RPR=222.0;EPP=10.5478;EPPR=0.0;DPRA=0.0;ODDS=65.4718;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9293;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.77;SOR=1.08	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:98:3767:-339.082,-26.559,0.0:97:100:97:0,97:4002,291,0:1:.:1:.:.:.:-0.299514	1/1:129.501:318:0:0:318:12040:-1082.94,-86.0934,0.0:318:100:318:0,318:13482,945,0:.:1:1:.:.:.:-0.0139599
chr5	1314009	.	C	T	5508.735000000001	REJECT	NS=2;DP=146;DPB=167.0;AC=4;AN=4;AF=1.0;RO=0;AO=167;PRO=0.0;PAO=0.0;QR=0;QA=6458;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=39;SAR=128;SRP=0.0;SAP=106.006;AB=0.0;ABP=0.0;RUN=1;RPP=15.506;RPPR=0.0;RPL=99.0;RPR=68.0;EPP=5.93594;EPPR=0.0;DPRA=0.0;ODDS=30.5803;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988024;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=59.825;QD=31.27;SOR=2.3205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:115.7045:41:0:0:42:1622:-146.227,-11.4058,0.0:41:100:41:0,41:1751,123,0:1:.:1:.:.:.:-0.299514	1/1:129.501:125:0:0:125:4836:-435.193,-33.8696,0.0:125:100:125:0,125:5391,370,0:.:1:1:.:.:.:-0.0139599
chr5	1314254	.	C	CAA	66.645	REJECT	NS=2;DP=20;DPB=97.4286;AC=2;AN=4;AF=0.5;RO=3;AO=3;PRO=54.0;PAO=51.5;QR=108;QA=89;PQR=1805.33;PQA=1722.83;SRF=3;SRR=0;SAF=2;SAR=1;SRP=9.52472;SAP=3.73412;AB=0.15;ABP=24.2907;RUN=1;RPP=3.73412;RPPR=9.52472;RPL=1.0;RPR=2.0;EPP=9.52472;EPPR=9.52472;DPRA=0.0;ODDS=1.59344;GTI=0;TYPE=ins;CIGAR=1M2I27M;NUMALT=2;MEANALT=7.5;LEN=2;MQM=53.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7.01098:8:0:0:2:54:-4.03727,0.0,-2.16293:2:67:3:.:.:1:.:.:.:-0.299514	0/1:14.7295:12:3:108:1:35:-6.56826,0.0,-13.3212:1:17:6:.:.:1:.:.:.:-0.0139599
chr5	1314254	.	C	CAAA	66.645	REJECT	NS=2;DP=20;DPB=97.4286;AC=2;AN=2;AF=0.0;RO=3;AO=3;PRO=54.0;PAO=51.5;QR=108;QA=55;PQR=1805.33;PQA=1722.83;SRF=3;SRR=0;SAF=1;SAR=2;SRP=9.52472;SAP=3.73412;AB=0.15;ABP=24.2907;RUN=1;RPP=3.73412;RPPR=9.52472;RPL=1.0;RPR=2.0;EPP=9.52472;EPPR=9.52472;DPRA=0.0;ODDS=1.59344;GTI=0;TYPE=ins;CIGAR=1M3I27M;NUMALT=2;MEANALT=7.5;LEN=3;MQM=52.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.747;FS=9.031;MLEAC=1;MLEAF=0.5;MQ=54.72;MQRankSum=-0.747;QD=10.57;ReadPosRankSum=0.747;SOR=4.163;ClippingRankSum=-0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.00549:9:0:0:1:27:-4.03727,-2.19102,-4.62476:5:57:7:2,9:315,0,11:1:.:1:.:.:.:-0.299514	./1:14.7295:12:3:108:2:28:-6.56826,-0.900554,-13.9822:2:33:6:.:.:.:.:1:.:.:.:-0.0139599
chr5	1315343	.	G	A	15360.0	REJECT	NS=2;DP=403;DPB=463.0;AC=4;AN=4;AF=1.0;RO=0;AO=463;PRO=0.0;PAO=0.0;QR=0;QA=17750;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=230;SRP=0.0;SAP=3.05251;AB=0.0;ABP=0.0;RUN=1;RPP=6.42931;RPPR=0.0;RPL=245.0;RPR=218.0;EPP=26.6526;EPPR=0.0;DPRA=0.0;ODDS=78.5507;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99568;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.935;SOR=0.7135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:118:0:0:119:4512:-406.062,-32.2391,0.0:118:100:118:0,117:4732,351,0:1:.:1:.:.:.:0.138309	1/1:129.501:344:0:0:344:13238:-1190.67,-93.1816,0.0:344:100:344:0,344:14851,1029,0:.:1:1:.:.:.:-0.0139599
chr5	1315660	.	G	A	16622.9	REJECT	NS=2;DP=437;DPB=500.0;AC=4;AN=4;AF=1.0;RO=0;AO=500;PRO=0.0;PAO=0.0;QR=0;QA=19148;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=247;SAR=253;SRP=0.0;SAP=3.16665;AB=0.0;ABP=0.0;RUN=1;RPP=3.02767;RPPR=0.0;RPL=249.0;RPR=251.0;EPP=5.51184;EPPR=0.0;DPRA=0.0;ODDS=79.7517;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9575;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.345;SOR=0.758	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:121:4617:-415.478,-32.7607,0.0:119:100:119:0,117:4780,351,0:1:.:1:.:.:.:0.138309	1/1:129.501:377:0:0:379:14531:-1306.94,-102.646,0.0:377:100:377:0,375:16096,1117,0:.:1:1:.:.:.:-0.0139599
chr5	1315884	.	C	T	6102.805	REJECT	NS=2;DP=371;DPB=431.0;AC=2;AN=4;AF=0.5;RO=212;AO=219;PRO=0.0;PAO=0.0;QR=8194;QA=8466;PQR=0.0;PQA=0.0;SRF=87;SRR=125;SAF=100;SAR=119;SRP=17.8009;SAP=6.58976;AB=0.508121;ABP=3.25717;RUN=1;RPP=4.686;RPPR=3.05127;RPL=116.0;RPR=103.0;EPP=4.21006;EPPR=4.48526;DPRA=0.0;ODDS=365.555;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.925;Dels=0.0;FS=2.9565;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6875;QD=19.015;ReadPosRankSum=1.183;SOR=0.5935;ClippingRankSum=-1.209	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:117:56:2129:62:2405:-184.47,0.0,-159.624:62:53:117:54,62:2274,0,1857:1:.:1:.:.:.:0.138309	0/1:129.501:312:156:6065:157:6061:-460.364,0.0,-460.719:157:50:312:155,157:5853,0,5828:.:1:1:.:.:.:-0.0139599
chr5	1317102	.	G	A	16681.949999999997	REJECT	NS=2;DP=441;DPB=509.0;AC=4;AN=4;AF=1.0;RO=1;AO=507;PRO=0.0;PAO=0.0;QR=16;QA=19383;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=242;SAR=265;SRP=5.18177;SAP=5.276;AB=0.0;ABP=0.0;RUN=1;RPP=7.67447;RPPR=5.18177;RPL=270.0;RPR=237.0;EPP=28.4041;EPPR=5.18177;DPRA=0.0;ODDS=86.0292;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994083;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.679;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.266;QD=32.275;ReadPosRankSum=0.853;SOR=0.6025;ClippingRankSum=-1.039	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:132:1:16:132:5024:-450.666,-34.5839,0.0:130:99:131:1,129:5334,381,0:1:.:1:.:.:.:0.138309	1/1:129.501:374:0:0:375:14359:-1291.42,-101.545,0.0:374:100:374:0,374:16038,1114,0:.:1:1:.:.:.:-0.0139599
chr5	1317481	.	A	G	1032.54	REJECT	NS=2;DP=230;DPB=264.0;AC=2;AN=4;AF=0.5;RO=210;AO=54;PRO=0.0;PAO=0.0;QR=7957;QA=2006;PQR=0.0;PQA=0.0;SRF=66;SRR=144;SAF=21;SAR=33;SRP=65.921;SAP=8.80089;AB=0.204545;ABP=203.181;RUN=1;RPP=3.6537;RPPR=3.67208;RPL=29.0;RPR=25.0;EPP=3.17115;EPPR=3.67208;DPRA=0.0;ODDS=15.0745;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995238;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.02;Dels=0.0;FS=3.5585;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.619;QD=9.385;ReadPosRankSum=-1.2115;SOR=0.4765;ClippingRankSum=-0.47	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:33:1211:35:1337:-102.004,0.0,-90.6188:34:51:67:33,34:1247,0,1134:1:.:1:.:.:.:0.138309	0/1:82.23395:196:177:6746:19:669:-7.10223,0.0,-553.849:19:10:196:177,19:142,0,6972:.:1:1:.:.:.:-0.0139599
chr5	1317820	.	A	G	15059.6	REJECT	NS=2;DP=564;DPB=636.0;AC=2;AN=4;AF=0.5;RO=149;AO=487;PRO=0.0;PAO=0.0;QR=5741;QA=18754;PQR=0.0;PQA=0.0;SRF=71;SRR=78;SAF=235;SAR=252;SRP=3.72441;SAP=4.29892;AB=0.765723;ABP=393.07;RUN=1;RPP=17.4972;RPPR=9.43728;RPL=215.0;RPR=272.0;EPP=5.36905;EPPR=5.47325;DPRA=0.0;ODDS=288.662;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9261;MQMR=60.0;PAIRED=0.997947;PAIREDR=0.986577;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8575;Dels=0.0;FS=3.3055;HaplotypeScore=8.8231;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=0.716;QD=25.105;ReadPosRankSum=0.5275;SOR=0.8225;ClippingRankSum=0.292	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:142:74:2844:69:2580:-193.407,0.0,-217.189:68:48:142:74,68:2384,0,2650:1:.:1:.:.:.:0.138309	0/1:129.501:492:75:2897:418:16174:-1320.99,0.0,-127.003:417:85:492:75,417:16627,0,1762:.:1:1:.:.:.:-0.0139599
chr5	1317949	.	C	T	18858.699999999997	REJECT	NS=2;DP=513;DPB=585.0;AC=4;AN=4;AF=1.0;RO=0;AO=585;PRO=0.0;PAO=0.0;QR=0;QA=21760;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=289;SAR=296;SRP=0.0;SAP=3.19218;AB=0.0;ABP=0.0;RUN=1;RPP=3.19218;RPPR=0.0;RPL=296.0;RPR=289.0;EPP=4.3503;EPPR=0.0;DPRA=0.0;ODDS=92.1312;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989744;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8659;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.2;SOR=0.7195	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9595:140:0:0:141:5167:-464.92,-38.137,0.0:140:100:140:0,139:5540,415,0:1:.:1:.:.:.:0.138309	1/1:124.9595:443:0:0:444:16593:-1492.16,-120.062,0.0:443:100:443:0,442:18221,1267,0:.:1:1:.:.:.:-0.0139599
chr5	1319473	.	T	TG	2154.56	REJECT	NS=2;DP=144;DPB=196.933;AC=2;AN=3;AF=0.5;RO=20;AO=89;PRO=24.5833;PAO=29.5833;QR=689;QA=2942;PQR=710.083;PQA=817.083;SRF=12;SRR=8;SAF=89;SAR=0;SRP=4.74748;SAP=196.271;AB=0.618056;ABP=20.4424;RUN=1;RPP=11.8182;RPPR=6.91895;RPL=54.0;RPR=35.0;EPP=11.8182;EPPR=3.44459;DPRA=0.0;ODDS=16.881;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.397;FS=34.564;MLEAC=1;MLEAF=0.5;MQ=59.865;MQRankSum=0.432;QD=16.295;RPA=9,10;RU=G;ReadPosRankSum=0.401;SOR=5.5855;STR;ClippingRankSum=-1.889	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.1567:35:3:101:16:544:-57.9266,-11.8,-18.0103:18:55:33:3,21:886,250,238:1:.:1:.:.:.:0.138309	0/1:116.72:128:17:588:73:2398:-199.777,0.0,-28.4178:81:78:102:18,89:2144,0,221:.:1:1:.:.:.:-0.0139599
chr5	1319473	.	T	TGG	2202.39	REJECT	NS=2;DP=144;DPB=196.933;AC=2;AN=2;AF=0.25;RO=20;AO=18;PRO=24.5833;PAO=23.5833;QR=689;QA=519;PQR=710.083;PQA=679.083;SRF=12;SRR=8;SAF=18;SAR=0;SRP=4.74748;SAP=42.0968;AB=0.125;ABP=178.9;RUN=1;RPP=15.074;RPPR=6.91895;RPL=14.0;RPR=4.0;EPP=15.074;EPPR=3.44459;DPRA=0.0;ODDS=16.881;GTI=0;TYPE=ins;CIGAR=1M2I14M;NUMALT=3;MEANALT=6.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.259;FS=4.313;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.859;QD=18.45;ReadPosRankSum=1.145;SOR=2.833;ClippingRankSum=-1.889	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.1567:35:3:101:10:281:-57.9266,-36.3988,-44.9084:11:32:33:3,12:886,426,477:1:.:1:.:.:.:0.138309	./1:134.44:109:17:588:8:238:-199.777,-185.087,-231.627:8:8:98:.:.:.:.:1:.:.:.:-0.0139599
chr5	1319483	.	CA	GGCC	2202.39	REJECT	SOMATIC;NS=2;DP=144;DPB=196.933;AC=1;AN=3;AF=0.0;RO=20;AO=2;PRO=24.5833;PAO=14.25;QR=689;QA=16;PQR=710.083;PQA=381.75;SRF=12;SRR=8;SAF=2;SAR=0;SRP=4.74748;SAP=7.35324;AB=0.0571429;ABP=62.6327;RUN=1;RPP=7.35324;RPPR=6.91895;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=3.44459;DPRA=0.0;ODDS=16.881;GTI=0;TYPE=complex;CIGAR=1M2I10M1X3M;NUMALT=3;MEANALT=7.0;LEN=17;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:73.3134:35:3:101:2:16:-57.9266,-64.613,-137.195:2:6:31:.:.:.:.:.:.:0.138309	./1:134.44:109:17:588:0:0:-199.777,-220.58,-425.222:0:0:98:.:.:1:.:.:.:-0.0139599
chr5	1319680	.	C	A	1869.2649999999999	REJECT	NS=2;DP=317;DPB=368.0;AC=2;AN=4;AF=0.5;RO=279;AO=89;PRO=0.0;PAO=0.0;QR=10402;QA=3312;PQR=0.0;PQA=0.0;SRF=143;SRR=136;SAF=53;SAR=36;SRP=3.39167;SAP=10.0615;AB=0.241848;ABP=216.027;RUN=1;RPP=7.13366;RPPR=4.76149;RPL=51.0;RPR=38.0;EPP=3.62026;EPPR=10.4898;DPRA=0.0;ODDS=117.363;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3275;Dels=0.0;FS=2.4315;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4185;QD=10.33;ReadPosRankSum=-0.7245;SOR=0.9815;ClippingRankSum=0.569	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7435:102:49:1846:53:1935:-146.552,0.0,-138.557:53:52:102:49,53:1849,0,1680:1:.:1:.:.:.:0.138309	0/1:117.7435:266:230:8556:36:1377:-51.9181,0.0,-697.615:36:14:266:230,36:775,0,8703:.:1:1:.:.:.:-0.0139599
chr5	1320136	.	G	A	1916.03	REJECT	NS=2;DP=379;DPB=433.0;AC=2;AN=4;AF=0.5;RO=341;AO=92;PRO=0.0;PAO=0.0;QR=13094;QA=3500;PQR=0.0;PQA=0.0;SRF=163;SRR=178;SAF=48;SAR=44;SRP=4.44309;SAP=3.38795;AB=0.212471;ABP=313.942;RUN=1;RPP=4.52089;RPPR=4.85064;RPL=50.0;RPR=42.0;EPP=6.40913;EPPR=8.36575;DPRA=0.0;ODDS=69.8694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978261;PAIREDR=0.98827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.09;Dels=0.0;FS=0.3615;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0145;QD=9.98;ReadPosRankSum=1.557;SOR=0.743;ClippingRankSum=1.232	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:50:1890:57:2170:-166.319,0.0,-141.134:57:53:106:48,57:1986,0,1677:1:.:1:.:.:.:0.138309	0/1:129.501:326:291:11204:35:1330:-31.3524,0.0,-919.414:35:11:326:291,35:513,0,11526:.:1:1:.:.:.:-0.0139599
chr5	1320247	.	G	A	2284.185	REJECT	NS=2;DP=417;DPB=480.0;AC=2;AN=4;AF=0.5;RO=374;AO=106;PRO=0.0;PAO=0.0;QR=14336;QA=4049;PQR=0.0;PQA=0.0;SRF=224;SRR=150;SAF=54;SAR=52;SRP=34.8044;SAP=3.09224;AB=0.220833;ABP=327.935;RUN=1;RPP=3.09224;RPPR=3.84637;RPL=52.0;RPR=54.0;EPP=5.05886;EPPR=4.49666;DPRA=0.0;ODDS=100.232;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=0.997326;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.181;Dels=0.0;FS=4.2155;HaplotypeScore=10.7054;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2565;QD=10.09;ReadPosRankSum=0.343;SOR=0.515;ClippingRankSum=1.375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:124:59:2280:66:2497:-190.84,0.0,-171.312:66:53:124:58,66:2312,0,2144:1:.:1:.:.:.:0.138309	0/1:129.501:354:315:12056:40:1552:-43.4758,0.0,-988.175:39:11:354:315,39:652,0,12391:.:1:1:.:.:.:-0.0139599
chr5	1320722	.	C	T	2563.725	REJECT	NS=2;DP=395;DPB=453.0;AC=2;AN=4;AF=0.5;RO=336;AO=117;PRO=0.0;PAO=0.0;QR=12941;QA=4470;PQR=0.0;PQA=0.0;SRF=169;SRR=167;SAF=55;SAR=62;SRP=3.03615;SAP=3.91972;AB=0.258278;ABP=232.913;RUN=1;RPP=3.02886;RPPR=4.66476;RPL=59.0;RPR=58.0;EPP=5.25601;EPPR=6.13825;DPRA=0.0;ODDS=196.31;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.997024;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9805;Dels=0.0;FS=1.3395;HaplotypeScore=8.9229;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.286;QD=12.155;ReadPosRankSum=0.715;SOR=0.7925;ClippingRankSum=-0.455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.82:115:50:1928:66:2501:-193.649,0.0,-142.085:66:57:115:49,66:2421,0,1772:1:.:1:.:.:.:0.138309	0/1:117.82:337:286:11013:51:1969:-85.8342,0.0,-899.25:51:15:337:286,51:1207,0,11315:.:1:1:.:.:.:-0.0139599
chr5	1322087	.	C	T	1849.03	REJECT	NS=2;DP=394;DPB=460.0;AC=2;AN=4;AF=0.5;RO=367;AO=92;PRO=0.0;PAO=0.0;QR=13926;QA=3502;PQR=0.0;PQA=0.0;SRF=165;SRR=202;SAF=40;SAR=52;SRP=11.1104;SAP=6.40913;AB=0.2;ABP=362.606;RUN=1;RPP=3.38795;RPPR=5.14627;RPL=48.0;RPR=44.0;EPP=3.0103;EPPR=4.01024;DPRA=0.0;ODDS=55.3926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991826;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.488;Dels=0.0;FS=2.8715;HaplotypeScore=15.4605;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.3195;QD=8.5;ReadPosRankSum=0.168;SOR=0.8355;ClippingRankSum=1.289	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:72:2737:58:2237:-166.095,0.0,-211.075:57:45:128:69,57:2016,0,2399:1:.:1:.:.:.:0.138309	0/1:129.501:329:295:11189:34:1265:-24.727,0.0,-917.314:34:10:328:294,34:428,0,11430:.:1:1:.:.:.:-0.0139599
chr5	1322468	.	G	A	1568.29	REJECT	NS=2;DP=281;DPB=325.0;AC=2;AN=4;AF=0.5;RO=250;AO=75;PRO=0.0;PAO=0.0;QR=9361;QA=2786;PQR=0.0;PQA=0.0;SRF=131;SRR=119;SAF=36;SAR=39;SRP=4.26107;SAP=3.27088;AB=0.230769;ABP=207.63;RUN=1;RPP=3.27088;RPPR=6.48466;RPL=39.0;RPR=36.0;EPP=7.90335;EPPR=5.82453;DPRA=0.0;ODDS=52.8115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0305;Dels=0.0;FS=0.0;HaplotypeScore=7.8875;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.419;QD=10.065;ReadPosRankSum=0.8485;SOR=0.725;ClippingRankSum=0.857	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:39:1484:49:1812:-139.281,0.0,-109.769:48:56:87:38,48:1628,0,1357:1:.:1:.:.:.:0.138309	0/1:129.501:237:211:7877:26:974:-23.4975,0.0,-644.425:26:11:237:211,26:391,0,8037:.:1:1:.:.:.:-0.0139599
chr5	1322663	.	T	C	13015.5	REJECT	NS=2;DP=341;DPB=392.0;AC=4;AN=4;AF=1.0;RO=0;AO=392;PRO=0.0;PAO=0.0;QR=0;QA=15084;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=193;SAR=199;SRP=0.0;SAP=3.20972;AB=0.0;ABP=0.0;RUN=1;RPP=11.0093;RPPR=0.0;RPL=215.0;RPR=177.0;EPP=17.989;EPPR=0.0;DPRA=0.0;ODDS=67.9636;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997449;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9242;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.265;SOR=0.7565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:102:3895:-350.596,-27.6412,0.0:100:100:100:0,98:4032,295,0:1:.:1:.:.:.:0.138309	1/1:129.501:290:0:0:290:11189:-1006.42,-78.5615,0.0:290:100:290:0,290:12554,870,0:.:1:1:.:.:.:-0.0139599
chr5	1323196	.	T	C	11943.45	REJECT	NS=2;DP=318;DPB=360.0;AC=4;AN=4;AF=1.0;RO=0;AO=360;PRO=0.0;PAO=0.0;QR=0;QA=13686;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=176;SAR=184;SRP=0.0;SAP=3.39634;AB=0.0;ABP=0.0;RUN=1;RPP=26.1968;RPPR=0.0;RPL=211.0;RPR=149.0;EPP=4.96463;EPPR=0.0;DPRA=0.0;ODDS=56.1505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9194;MQMR=0.0;PAIRED=0.991667;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8825;MLEAC=2;MLEAF=1.0;MQ=59.87;QD=29.395;SOR=0.7385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:83:3189:-286.763,-22.5108,0.0:83:100:83:0,83:3685,253,0:1:.:1:.:.:.:0.138309	1/1:129.501:277:0:0:277:10497:-944.133,-74.9617,0.0:277:100:277:0,277:11673,810,0:.:1:1:.:.:.:-0.0139599
chr5	1323212	.	C	T	1675.075	REJECT	NS=2;DP=306;DPB=344.0;AC=2;AN=4;AF=0.5;RO=263;AO=80;PRO=0.0;PAO=0.0;QR=9938;QA=3031;PQR=0.0;PQA=0.0;SRF=134;SRR=129;SAF=37;SAR=43;SRP=3.21671;SAP=3.98746;AB=0.232558;ABP=216.724;RUN=1;RPP=16.1477;RPPR=5.99091;RPL=51.0;RPR=29.0;EPP=13.8677;EPPR=12.0017;DPRA=0.0;ODDS=96.4032;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=58.6125;MQMR=59.4905;PAIRED=1.0;PAIREDR=0.992395;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4605;Dels=0.0;FS=5.956;HaplotypeScore=6.9433;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=0.237;QD=12.195;ReadPosRankSum=0.499;SOR=0.6075;ClippingRankSum=-0.92	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2165:75:31:1203:45:1747:-133.639,0.0,-87.7612:44:59:75:31,44:1683,0,1108:1:.:1:.:.:.:0.138309	0/1:120.2165:268:232:8735:35:1284:-43.8473,0.0,-712.189:35:13:267:232,35:653,0,8943:.:1:1:.:.:.:-0.0139599
chr5	1324121	.	G	A	2114.4849999999997	REJECT	NS=2;DP=329;DPB=382.0;AC=2;AN=4;AF=0.5;RO=286;AO=96;PRO=0.0;PAO=0.0;QR=10722;QA=3728;PQR=0.0;PQA=0.0;SRF=138;SRR=148;SAF=50;SAR=46;SRP=3.76956;SAP=3.37221;AB=0.251309;ABP=208.22;RUN=1;RPP=3.10078;RPPR=6.6851;RPL=47.0;RPR=49.0;EPP=3.10078;EPPR=19.0762;DPRA=0.0;ODDS=171.968;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993007;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.9485;Dels=0.0;FS=1.8185;HaplotypeScore=7.8276;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8805;QD=11.19;ReadPosRankSum=0.015;SOR=0.733;ClippingRankSum=-0.618	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:53:1972:53:2061:-156.799,0.0,-148.771:53:50:105:51,53:1993,0,1727:1:.:1:.:.:.:0.138309	0/1:129.501:276:233:8750:43:1667:-75.2465,0.0,-712.349:43:16:276:233,43:1042,0,8937:.:1:1:.:.:.:-0.0139599
chr5	1325590	.	T	C	1700.38	REJECT	NS=2;DP=349;DPB=402.0;AC=2;AN=4;AF=0.5;RO=319;AO=82;PRO=0.0;PAO=0.0;QR=12224;QA=3160;PQR=0.0;PQA=0.0;SRF=192;SRR=127;SAF=45;SAR=37;SRP=31.7704;SAP=4.70511;AB=0.20398;ABP=308.983;RUN=1;RPP=3.11623;RPPR=3.83396;RPL=42.0;RPR=40.0;EPP=3.434;EPPR=12.3293;DPRA=0.0;ODDS=38.2158;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5215;Dels=0.0;FS=1.699;HaplotypeScore=9.7481;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3645;QD=9.785;ReadPosRankSum=0.2535;SOR=0.633;ClippingRankSum=1.34	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.47:103:50:1890:54:2073:-158.421,0.0,-141.923:53:52:103:49,53:1938,0,1760:1:.:1:.:.:.:0.138309	0/1:115.185:296:269:10334:28:1087:-17.3073,0.0,-849.078:28:9:296:268,28:333,0,10665:.:1:1:.:.:.:-0.0139599
chr5	1325803	.	A	G	2048.085	REJECT	NS=2;DP=465;DPB=524.0;AC=2;AN=4;AF=0.5;RO=414;AO=110;PRO=0.0;PAO=0.0;QR=16018;QA=4140;PQR=0.0;PQA=0.0;SRF=212;SRR=202;SAF=62;SAR=48;SRP=3.53481;SAP=6.87947;AB=0.209924;ABP=385.985;RUN=1;RPP=3.32615;RPPR=14.1089;RPL=53.0;RPR=57.0;EPP=3.32615;EPPR=3.03128;DPRA=0.0;ODDS=154.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8818;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995169;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7185;Dels=0.0;FS=2.0645;HaplotypeScore=8.7174;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=-0.3005;QD=9.32;ReadPosRankSum=-0.6625;SOR=0.926;ClippingRankSum=-1.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:60:2321:57:2159:-162.598,0.0,-177.186:56:48:115:59,55:1880,0,2060:1:.:1:.:.:.:0.138309	0/1:129.501:406:354:13697:53:1981:-67.9489,0.0,-1122.01:53:13:406:353,53:1002,0,14055:.:1:1:.:.:.:-0.0139599
chr5	1326843	.	GGGG	AGAC	198.883	REJECT	NS=2;DP=420;DPB=433.0;AC=2;AN=3;AF=0.25;RO=346;AO=23;PRO=19.5;PAO=3.5;QR=11491;QA=652;PQR=345.5;PQA=89.0;SRF=193;SRR=153;SAF=12;SAR=11;SRP=13.0518;SAP=3.10471;AB=0.132075;ABP=127.645;RUN=1;RPP=37.093;RPPR=7.93063;RPL=21.0;RPR=2.0;EPP=3.10471;EPPR=6.04785;DPRA=0.0;ODDS=37.3758;GTI=0;TYPE=complex;CIGAR=1X1M2X;NUMALT=2;MEANALT=7.5;LEN=4;MQM=35.8261;MQMR=57.1387;PAIRED=1.0;PAIREDR=0.99422;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:106:83:2727:14:350:-26.4814,0.0,-228.421:14:14:103:.:.:1:.:.:.:0.138309	./1:133.962:314:263:8764:9:302:0.0,-14.4183,-766.455:9:3:282:.:.:1:.:.:.:-0.0139599
chr5	1326846	.	G	C	198.883	REJECT	NS=2;DP=420;DPB=433.0;AC=2;AN=2;AF=0.0;RO=346;AO=16;PRO=19.5;PAO=7.0;QR=11491;QA=285;PQR=345.5;PQA=177.5;SRF=193;SRR=153;SAF=2;SAR=14;SRP=13.0518;SAP=22.5536;AB=0.0566038;ABP=184.021;RUN=1;RPP=22.5536;RPPR=7.93063;RPL=2.0;RPR=14.0;EPP=37.7539;EPPR=6.04785;DPRA=0.0;ODDS=37.3758;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=2;MEANALT=7.5;LEN=1;MQM=57.4375;MQMR=57.1387;PAIRED=1.0;PAIREDR=0.99422;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:106:83:2727:6:118:-26.4814,-17.9323,-239.018:6:6:103:.:.:1:.:.:.:0.138309	./1:133.962:314:263:8764:10:167:0.0,-17.0722,-733.741:10:4:282:.:.:1:.:.:.:-0.0139599
chr5	1327101	.	C	G	1290.545	REJECT	NS=2;DP=359;DPB=412.0;AC=2;AN=4;AF=0.5;RO=296;AO=89;PRO=0.0;PAO=0.0;QR=9638;QA=2854;PQR=0.0;PQA=0.0;SRF=149;SRR=147;SAF=38;SAR=51;SRP=3.03964;SAP=7.13366;AB=0.216019;ABP=291.605;RUN=1;RPP=3.0347;RPPR=3.2744;RPL=45.0;RPR=44.0;EPP=3.22989;EPPR=4.88833;DPRA=0.0;ODDS=75.6723;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.5;LEN=1;MQM=53.382;MQMR=56.2736;PAIRED=0.988764;PAIREDR=0.989865;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.0815;Dels=0.0;FS=4.435;HaplotypeScore=55.1208;MLEAC=1;MLEAF=0.5;MQ=55.865;MQRankSum=-0.0155;QD=7.485;ReadPosRankSum=1.3495;SOR=0.9755;ClippingRankSum=0.613	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:47:1478:48:1563:-111.446,0.0,-105.976:45:48:95:43,43:1220,0,1114:1:.:1:.:.:.:0.138309	0/1:129.501:306:249:8160:41:1291:-33.4424,0.0,-643.918:41:13:298:249,41:513,0,7703:.:1:1:.:.:.:-0.0139599
chr5	1327101	.	C	T	1389.32	REJECT	NS=2;DP=412;DPB=412.0;AC=2;AN=2;AF=0.0;RO=296;AO=26;PRO=0.0;PAO=0.0;QR=9638;QA=597;PQR=0.0;PQA=0.0;SRF=149;SRR=147;SAF=19;SAR=7;SRP=3.03964;SAP=15.0369;AB=0.0631068;ABP=686.075;RUN=1;RPP=8.35546;RPPR=3.2744;RPL=17.0;RPR=9.0;EPP=11.3621;EPPR=4.88833;DPRA=0.0;ODDS=75.6723;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.5;LEN=1;MQM=35.4615;MQMR=56.2736;PAIRED=1.0;PAIREDR=0.989865;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:106:47:1478:10:267:-111.446,-109.229,-225.559:10:10:105:.:.:1:.:.:.:0.138309	./1:160.002:306:249:8160:16:330:-33.4424,-78.1323,-728.294:16:5:306:.:.:1:.:.:.:-0.0139599
chr5	1327851	.	C	T	873.959	REJECT	NS=2;DP=401;DPB=459.0;AC=2;AN=4;AF=0.5;RO=377;AO=81;PRO=0.0;PAO=0.0;QR=13654;QA=2605;PQR=0.0;PQA=0.0;SRF=196;SRR=181;SAF=41;SAR=40;SRP=4.30627;SAP=3.03711;AB=0.176471;ABP=420.316;RUN=1;RPP=3.03711;RPPR=3.1543;RPL=40.0;RPR=41.0;EPP=25.5561;EPPR=3.47685;DPRA=0.0;ODDS=33.3219;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=49.2593;MQMR=49.1114;PAIRED=0.987654;PAIREDR=0.994695;technology.ILLUMINA=1.0;MQ0=3;BaseQRankSum=-2.7855;Dels=0.0;FS=1.9925;HaplotypeScore=40.3306;MLEAC=1;MLEAF=0.5;MQ=52.175;MQRankSum=2.1165;QD=4.845;ReadPosRankSum=-0.037;SOR=0.7235;ClippingRankSum=-0.155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5:111:73:2627:44:1372:-79.6038,0.0,-187.146:42:38:111:65,40:965,0,2109:1:.:1:.:.:.:0.138309	0/1:117.2275:342:304:11027:37:1233:-15.5352,0.0,-806.974:37:11:341:305,37:352,0,9961:.:1:1:.:.:.:-0.0139599
chr5	1328058	.	G	T	1035.84	REJECT	NS=2;DP=101;DPB=101.0;AC=4;AN=4;AF=1.0;RO=11;AO=90;PRO=0.0;PAO=0.0;QR=275;QA=3178;PQR=0.0;PQA=0.0;SRF=7;SRR=4;SAF=36;SAR=54;SRP=4.78696;SAP=10.8276;AB=0.0;ABP=0.0;RUN=1;RPP=198.443;RPPR=12.6832;RPL=90.0;RPR=0.0;EPP=10.8276;EPPR=12.6832;DPRA=0.0;ODDS=13.753;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=20.5;MQMR=14.4545;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=43;BaseQRankSum=1.839;Dels=0.0;FS=0.0;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.0;MQ=21.01;MQRankSum=0.992;QD=9.86;ReadPosRankSum=-3.109;SOR=1.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:59.7285:34:7:172:27:1002:-31.9888,-0.420594,0.0:27:79:34:.:.:.:.:1:.:.:.:0.138309	1/1:89.7855:88:4:103:63:2176:-98.4627,-8.52204,0.0:83:94:88:7,103:1113,55,0:.:1:1:.:.:.:-0.0139599
chr5	1328320	.	A	G	113.569	REJECT	NS=2;DP=116;DPB=116.0;AC=2;AN=4;AF=0.5;RO=86;AO=22;PRO=0.0;PAO=0.0;QR=2805;QA=674;PQR=0.0;PQA=0.0;SRF=39;SRR=47;SAF=9;SAR=13;SRP=4.62628;SAP=4.58955;AB=0.189655;ABP=100.053;RUN=1;RPP=42.4916;RPPR=61.1856;RPL=1.0;RPR=21.0;EPP=6.56362;EPPR=3.1113;DPRA=0.0;ODDS=0.423635;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=31.2273;MQMR=32.8721;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=176;BaseQRankSum=-1.768;Dels=0.0;FS=0.0;HaplotypeScore=24.0623;MLEAC=1;MLEAF=0.5;MQ=21.81;MQRankSum=-0.667;QD=0.14;ReadPosRankSum=0.654;SOR=1.321	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.567:27:14:517:10:346:-17.0574,0.0,-21.8369:10:37:27:.:.:.:.:1:.:.:.:0.138309	0/1:35.01346:176:72:2288:12:328:-3.70585,0.0,-132.799:21:12:173:228,30:66,0,1480:.:1:1:.:.:.:-0.0139599
chr5	1328320	.	A	C	113.569	REJECT	NS=2;DP=116;DPB=116.0;AC=2;AN=2;AF=0.0;RO=86;AO=8;PRO=0.0;PAO=0.0;QR=2805;QA=113;PQR=0.0;PQA=0.0;SRF=39;SRR=47;SAF=0;SAR=8;SRP=4.62628;SAP=20.3821;AB=0.0689655;ABP=190.206;RUN=1;RPP=20.3821;RPPR=61.1856;RPL=0.0;RPR=8.0;EPP=20.3821;EPPR=3.1113;DPRA=0.0;ODDS=0.423635;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=29.75;MQMR=32.8721;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:113.567:27:14:517:3:34:-17.0574,-18.2654,-42.3662:3:11:27:.:.:1:.:.:.:0.138309	./1:4.02692:89:72:2288:5:79:-3.70585,-14.5561,-148.986:5:6:89:.:.:1:.:.:.:-0.0139599
chr5	1328331	.	T	C	2821.55	REJECT	NS=2;DP=153;DPB=153.0;AC=4;AN=4;AF=1.0;RO=21;AO=132;PRO=0.0;PAO=0.0;QR=623;QA=4486;PQR=0.0;PQA=0.0;SRF=9;SRR=12;SAF=53;SAR=79;SRP=3.94093;SAP=14.1309;AB=0.0;ABP=0.0;RUN=1;RPP=289.645;RPPR=48.6112;RPL=0.0;RPR=132.0;EPP=14.1309;EPPR=3.94093;DPRA=0.0;ODDS=21.8686;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=41.8485;MQMR=17.7143;PAIRED=0.992424;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=107;BaseQRankSum=1.9735;Dels=0.0;FS=0.0;HaplotypeScore=23.114;MLEAC=2;MLEAF=1.0;MQ=40.725;MQRankSum=2.718;QD=23.52;ReadPosRankSum=0.857;SOR=0.7155;ClippingRankSum=-1.404	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:73.4869:29:6:201:31:1045:-76.3391,-3.7601,0.0:25:89:29:1,20:712,52,0:1:.:1:.:.:.:0.138309	1/1:119.0535:169:15:422:101:3441:-242.064,-10.4343,0.0:139:83:169:46,177:3256,156,0:.:1:1:.:.:.:-0.0139599
chr5	1328430	.	ACTCCTCTACGGACACATTTCATCCAGCTC	A	738.73	PASS	DP=86;AC=1;AN=4;AF=0.5;BaseQRankSum=0.948;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=56.51;MQRankSum=-1.866;QD=8.59;ReadPosRankSum=0.304;SOR=0.85;ClippingRankSum=0.733	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:28,22:50:99.0:776,0,1074:22:44:50:1:.:.:.:.:.:0.138309	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0139599
chr5	1328459	.	C	A	251.317	REJECT	NS=2;DP=286;DPB=286.0;AC=1;AN=4;AF=0.25;RO=258;AO=28;PRO=0.0;PAO=0.0;QR=9457;QA=944;PQR=0.0;PQA=0.0;SRF=140;SRR=118;SAF=16;SAR=12;SRP=7.08391;SAP=4.25114;AB=0.272727;ABP=32.6213;RUN=1;RPP=63.8115;RPPR=3.3133;RPL=0.0;RPR=28.0;EPP=4.25114;EPPR=5.73727;DPRA=0.0;ODDS=57.8678;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=49.75;MQMR=52.1744;PAIRED=1.0;PAIREDR=0.996124;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:66:48:1718:18:605:-34.725,0.0,-123.677:18:27:66:.:.:1:.:.:.:0.138309	0/0:160.002:220:210:7739:10:339:0.0,-28.8245,-623.308:10:5:220:.:.:0:.:.:.:-0.0139599
chr5	1328897	.	C	T	1425.9650000000001	REJECT	NS=2;DP=315;DPB=364.0;AC=2;AN=4;AF=0.5;RO=269;AO=93;PRO=0.0;PAO=0.0;QR=9645;QA=3030;PQR=0.0;PQA=0.0;SRF=143;SRR=126;SAF=43;SAR=50;SRP=5.34322;SAP=4.15441;AB=0.255495;ABP=192.024;RUN=1;RPP=3.03365;RPPR=5.92443;RPL=46.0;RPR=47.0;EPP=4.90158;EPPR=4.37453;DPRA=0.0;ODDS=149.362;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=55.3763;MQMR=54.2565;PAIRED=0.989247;PAIREDR=0.98513;technology.ILLUMINA=1.0;MQ0=2;BaseQRankSum=-1.9305;Dels=0.0;FS=2.174;HaplotypeScore=37.6293;MLEAC=1;MLEAF=0.5;MQ=56.64;MQRankSum=2.5685;QD=8.615;ReadPosRankSum=0.742;SOR=0.7775;ClippingRankSum=-1.02	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.554:90:51:1771:46:1509:-105.26,0.0,-125.662:43:48:89:41,41:1228,0,1282:1:.:1:.:.:.:0.138309	0/1:118.554:266:218:7874:47:1521:-65.8105,0.0,-610.313:46:17:265:219,46:812,0,7576:.:1:1:.:.:.:-0.0139599
chr5	1329886	.	C	A	13.8197	REJECT	NS=2;DP=537;DPB=537.0;AC=1;AN=4;AF=0.25;RO=489;AO=47;PRO=0.0;PAO=0.0;QR=16804;QA=1521;PQR=0.0;PQA=0.0;SRF=237;SRR=252;SAF=34;SAR=13;SRP=4.00944;SAP=23.3852;AB=0.188976;ABP=109.72;RUN=1;RPP=47.41;RPPR=63.7982;RPL=8.0;RPR=39.0;EPP=10.8184;EPPR=33.6019;DPRA=0.0;ODDS=3.13973;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=21.8298;MQMR=31.3027;PAIRED=1.0;PAIREDR=0.993865;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:13.8197:127:102:3427:24:738:-8.37271,0.0,-162.311:24:19:126:.:.:1:.:.:.:0.138309	0/0:150.003:410:387:13377:23:783:0.0,-60.8987,-841.071:23:6:410:.:.:0:.:.:.:-0.0139599
chr5	1330253	.	T	C	2325.275	REJECT	NS=2;DP=472;DPB=546.0;AC=2;AN=4;AF=0.5;RO=421;AO=125;PRO=0.0;PAO=0.0;QR=16242;QA=4653;PQR=0.0;PQA=0.0;SRF=211;SRR=210;SAF=57;SAR=68;SRP=3.01546;SAP=5.11229;AB=0.228938;ABP=351.464;RUN=1;RPP=6.91895;RPPR=3.6344;RPL=55.0;RPR=70.0;EPP=6.91895;EPPR=3.26304;DPRA=0.0;ODDS=224.709;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988124;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.203;Dels=0.0;FS=2.528;HaplotypeScore=6.8851;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.951;QD=8.66;ReadPosRankSum=0.9215;SOR=0.915;ClippingRankSum=-0.629	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.616:145:83:3160:64:2352:-171.835,0.0,-244.547:63:43:145:81,62:2039,0,2808:1:.:1:.:.:.:0.138309	0/1:117.616:398:338:13082:61:2301:-98.8726,0.0,-1068.52:61:15:398:337,61:1365,0,13427:.:1:1:.:.:.:-0.0139599
chr5	1330840	.	T	C	2885.77	REJECT	NS=2;DP=542;DPB=615.0;AC=2;AN=4;AF=0.5;RO=470;AO=145;PRO=0.0;PAO=0.0;QR=18118;QA=5571;PQR=0.0;PQA=0.0;SRF=212;SRR=258;SAF=72;SAR=73;SRP=12.7865;SAP=3.02528;AB=0.235772;ABP=375.956;RUN=1;RPP=7.33827;RPPR=12.7865;RPL=64.0;RPR=81.0;EPP=3.14508;EPPR=4.50723;DPRA=0.0;ODDS=299.344;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=0.991489;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6505;Dels=0.0;FS=1.415;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2125;QD=10.53;ReadPosRankSum=0.24;SOR=0.549;ClippingRankSum=0.809	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:144:75:2838:70:2703:-203.941,0.0,-216.092:70:48:144:74,70:2517,0,2652:1:.:1:.:.:.:0.138309	0/1:129.501:469:395:15280:75:2868:-130.621,0.0,-1246.91:75:16:469:394,75:1803,0,15695:.:1:1:.:.:.:-0.0139599
chr5	1331219	.	A	G	1936.215	REJECT	NS=2;DP=438;DPB=494.0;AC=2;AN=4;AF=0.5;RO=391;AO=103;PRO=0.0;PAO=0.0;QR=13951;QA=3859;PQR=0.0;PQA=0.0;SRF=196;SRR=195;SAF=53;SAR=50;SRP=3.01585;SAP=3.20004;AB=0.208502;ABP=367.607;RUN=1;RPP=4.04333;RPPR=16.3446;RPL=55.0;RPR=48.0;EPP=3.03138;EPPR=7.0589;DPRA=0.0;ODDS=144.613;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.997442;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.383;Dels=0.0;FS=0.352;HaplotypeScore=3.8905;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0165;QD=9.35;ReadPosRankSum=0.423;SOR=0.755;ClippingRankSum=-0.251	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.24:110:57:2048:54:2009:-150.778,0.0,-154.285:53:48:110:57,53:1814,0,1878:1:.:1:.:.:.:0.138309	0/1:117.24:383:334:11903:49:1850:-63.6295,0.0,-967.024:49:13:383:334,49:973,0,12146:.:1:1:.:.:.:-0.0139599
chr5	1331673	.	CAGGCCCTGAGCTGTGCAGCCGCTGG	C	3924.48	REJECT	NS=2;DP=220;DPB=105.889;AC=2;AN=4;AF=0.5;RO=66;AO=175;PRO=69.0;PAO=5.0;QR=2498;QA=5378;PQR=2380.5;PQA=68.5;SRF=30;SRR=36;SAF=82;SAR=93;SRP=4.19474;SAP=4.51172;AB=0.72314;ABP=107.672;RUN=1;RPP=30.4205;RPPR=4.19474;RPL=111.0;RPR=64.0;EPP=5.10732;EPPR=13.6703;DPRA=0.0;ODDS=157.238;GTI=0;TYPE=del;CIGAR=1M25D1M;NUMALT=1;MEANALT=1.5;LEN=25;MQM=64.6286;MQMR=60.0;PAIRED=0.994286;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=1331698;HOMLEN=11;HOMSEQ=AGGCCCTGAGC;SVLEN=-25;SVTYPE=DEL;BaseQRankSum=1.415;FS=2.0925;MLEAC=1;MLEAF=0.5;MQ=62.49;MQRankSum=3.644;QD=14.215;ReadPosRankSum=2.012;SOR=0.6745;ClippingRankSum=-1.006	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.823:83:36:1368:35:1066:-68.6352,0.0,-192.389:43:49:95:53,57:1617,0,2211:1:.:1:1:.:.:0.138309	0/1:119.823:184:30:1130:140:4312:-332.891,0.0,-158.349:140:82:175:44,216:23041,0,7579:.:1:1:1:.:.:-0.0139599
chr5	1333077	.	A	G	2142.965	REJECT	NS=2;DP=478;DPB=538.0;AC=2;AN=4;AF=0.5;RO=408;AO=129;PRO=0.0;PAO=0.0;QR=14702;QA=4622;PQR=0.0;PQA=0.0;SRF=181;SRR=227;SAF=52;SAR=77;SRP=14.2722;SAP=13.531;AB=0.239777;ABP=319.448;RUN=1;RPP=4.37378;RPPR=3.35092;RPL=69.0;RPR=60.0;EPP=3.1618;EPPR=5.58626;DPRA=0.0;ODDS=278.599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=56.0233;MQMR=58.1373;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=2;BaseQRankSum=0.276;Dels=0.0;FS=0.346;HaplotypeScore=27.0066;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-0.136;QD=9.235;ReadPosRankSum=-0.3645;SOR=0.757;ClippingRankSum=0.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:66:2381:55:1979:-144.863,0.0,-180.13:53:45:118:63,52:1712,0,2139:1:.:1:.:.:.:0.138309	0/1:129.501:418:342:12321:74:2643:-122.317,0.0,-983.935:75:18:417:342,76:1634,0,12125:.:1:1:.:.:.:-0.0139599
chr5	1333231	.	G	T	58.7476	REJECT	NS=2;DP=380;DPB=380.0;AC=2;AN=4;AF=0.5;RO=288;AO=70;PRO=0.0;PAO=0.0;QR=7910;QA=2228;PQR=0.0;PQA=0.0;SRF=177;SRR=111;SAF=61;SAR=9;SRP=35.8538;SAP=86.8912;AB=0.184211;ABP=332.16;RUN=1;RPP=80.5629;RPPR=61.3988;RPL=60.0;RPR=10.0;EPP=63.067;EPPR=21.8599;DPRA=0.0;ODDS=13.5271;GTI=1;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=8.2;MQMR=11.9688;PAIRED=0.985714;PAIREDR=0.996528;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:58.7476:88:60:1580:25:851:-14.0432,0.0,-30.0491:25:29:85:.:.:1:.:.:.:0.138309	0/1:-0.0:292:228:6330:45:1377:-1.88371,0.0,-135.076:45:16:273:.:.:1:.:.:.:2.05322
chr5	1333260	.	T	G	49.77	PASS	SOMATIC;DP=1537;AC=1;AN=4;AF=0.5;MQ0=858;BaseQRankSum=1.374;Dels=0.0;FS=0.991;HaplotypeScore=83.1669;MLEAC=1;MLEAF=0.5;MQ=8.94;MQRankSum=-0.012;QD=0.03;ReadPosRankSum=1.596;SOR=0.925	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:1.95593	0/1:1254,161:1537:78.0:78,0,1729:161:11:1415:.:1:.:.:.:.:2.05322
chr5	1333396	.	A	G	1313.46	REJECT	NS=2;DP=625;DPB=625.0;AC=2;AN=4;AF=0.5;RO=435;AO=185;PRO=0.0;PAO=0.0;QR=14570;QA=6631;PQR=0.0;PQA=0.0;SRF=208;SRR=227;SAF=154;SAR=31;SRP=4.81237;SAP=180.59;AB=0.296;ABP=228.93;RUN=1;RPP=263.599;RPPR=93.9875;RPL=18.0;RPR=167.0;EPP=180.59;EPPR=9.12537;DPRA=0.0;ODDS=146.087;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=25.3351;MQMR=39.1241;PAIRED=0.994595;PAIREDR=0.995402;technology.ILLUMINA=1.0;MQ0=75;BaseQRankSum=1.761;Dels=0.0;FS=67.073;HaplotypeScore=50.5481;MLEAC=1;MLEAF=0.5;MQ=38.31;MQRankSum=-7.39;QD=3.51;ReadPosRankSum=-5.013;SOR=3.809	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:132:75:2469:56:1965:-76.7044,0.0,-143.939:56:43:131:.:.:.:.:1:.:.:.:1.95593	0/1:129.501:529:360:12101:129:4666:-128.962,0.0,-723.156:155:29:525:380,182:2014,0,8337:.:1:1:.:.:.:2.05322
chr5	1333411	.	GA	G	89.0711	REJECT	NS=2;DP=883;DPB=841.0;AC=2;AN=3;AF=0.25;RO=596;AO=195;PRO=22.0;PAO=11.5;QR=20568;QA=6367;PQR=491.667;PQA=122.667;SRF=367;SRR=229;SAF=111;SAR=84;SRP=72.3954;SAP=11.1283;AB=0.245337;ABP=395.636;RUN=1;RPP=237.14;RPPR=103.408;RPL=25.0;RPR=170.0;EPP=44.4464;EPPR=59.0314;DPRA=0.0;ODDS=20.5094;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=13.7692;MQMR=38.5386;PAIRED=0.994872;PAIREDR=0.996644;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.67:186:138:4691:24:790:0.0,-13.8828,-291.469:24:13:183:.:.:1:.:.:.:1.95593	0/1:89.0712:697:458:15877:171:5577:-44.0815,0.0,-1018.59:171:25:688:.:.:1:.:.:.:2.05322
chr5	1333412	.	A	G	89.0711	REJECT	NS=2;DP=883;DPB=841.0;AC=2;AN=2;AF=0.0;RO=596;AO=80;PRO=22.0;PAO=11.5;QR=20568;QA=1033;PQR=491.667;PQA=122.667;SRF=367;SRR=229;SAF=56;SAR=24;SRP=72.3954;SAP=30.8051;AB=0.0846485;ABP=1047.44;RUN=1;RPP=55.5599;RPPR=103.408;RPL=18.0;RPR=62.0;EPP=3.0103;EPPR=59.0314;DPRA=0.0;ODDS=20.5094;GTI=0;TYPE=snp;CIGAR=1M1X1M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=18.9875;MQMR=38.5386;PAIRED=1.0;PAIREDR=0.996644;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.67:186:138:4691:21:225:0.0,-21.6966,-304.881:21:11:183:.:.:1:.:.:.:1.95593	./1:89.0712:697:458:15877:59:808:-44.0815,-93.9036,-1134.1:59:9:688:.:.:1:.:.:.:2.05322
chr5	1333463	.	AC	GG	11276.8	REJECT	NS=2;DP=1258;DPB=1273.5;AC=2;AN=2;AF=0.0;RO=290;AO=125;PRO=7.5;PAO=10.5;QR=9756;QA=4151;PQR=130.5;PQA=340.5;SRF=133;SRR=157;SAF=81;SAR=44;SRP=7.32329;SAP=26.7923;AB=0.0993641;ABP=1756.87;RUN=1;RPP=3.86152;RPPR=3.13011;RPL=66.0;RPR=59.0;EPP=3.44459;EPPR=3.04025;DPRA=0.0;ODDS=202.033;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=2;MEANALT=6.5;LEN=2;MQM=13.448;MQMR=49.7759;PAIRED=1.0;PAIREDR=0.996552;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.004:262:49:1639:15:480:-275.054,-269.409,-393.199:15:6:258:.:.:1:.:.:.:1.95593	./1:133.004:996:241:8117:110:3671:-881.037,-791.077,-1408.57:110:11:980:.:.:1:.:.:.:2.05322
chr5	1333464	.	C	G	11276.8	REJECT	NS=2;DP=1258;DPB=1273.5;AC=2;AN=4;AF=0.5;RO=290;AO=823;PRO=7.5;PAO=13.0;QR=9756;QA=29063;PQR=130.5;PQA=401.0;SRF=133;SRR=157;SAF=549;SAR=274;SRP=7.32329;SAP=202.546;AB=0.654213;ABP=262.869;RUN=1;RPP=3.77282;RPPR=3.13011;RPL=403.0;RPR=420.0;EPP=13.4824;EPPR=3.04025;DPRA=0.0;ODDS=202.033;GTI=0;TYPE=snp;CIGAR=1M1X;NUMALT=2;MEANALT=6.5;LEN=1;MQM=22.8032;MQMR=49.7759;PAIRED=0.996355;PAIREDR=0.996552;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=168;BaseQRankSum=4.88;Dels=0.0;FS=24.468;HaplotypeScore=211.322;MLEAC=1;MLEAF=0.5;MQ=32.92;MQRankSum=-17.675;QD=9.18;ReadPosRankSum=8.343;SOR=1.687	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:133.004:262:49:1639:194:6705:-275.054,0.0,-88.1054:194:75:258:.:.:.:.:1:.:.:.:1.95593	0/1:116.002:1077:241:8117:629:22358:-881.037,0.0,-499.832:763:71:1063:249,898:10665,0,6370:.:1:1:.:.:.:2.05322
chr5	1333497	.	CA	GG	2632.04	REJECT	NS=2;DP=1605;DPB=1629.5;AC=2;AN=2;AF=0.0;RO=999;AO=105;PRO=28.0;PAO=2.5;QR=32798;QA=3051;PQR=509.5;PQA=88.5;SRF=493;SRR=506;SAF=52;SAR=53;SRP=3.37765;SAP=3.03098;AB=0.0654206;ABP=2635.87;RUN=1;RPP=79.9631;RPPR=137.779;RPL=22.0;RPR=83.0;EPP=3.03098;EPPR=9.58558;DPRA=0.0;ODDS=192.431;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=2;MEANALT=10.0;LEN=2;MQM=21.9143;MQMR=35.025;PAIRED=1.0;PAIREDR=0.98999;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:358:235:7598:18:568:-86.3705,-91.4892,-517.094:18:5:343:.:.:1:.:.:.:1.95593	./1:160.002:1247:764:25200:87:2483:-236.261,-236.987,-1641.98:87:7:1217:.:.:1:.:.:.:2.05322
chr5	1333498	.	A	G	2632.04	REJECT	NS=2;DP=1605;DPB=1629.5;AC=2;AN=4;AF=0.5;RO=999;AO=456;PRO=28.0;PAO=18.5;QR=32798;QA=15328;PQR=509.5;PQA=598.0;SRF=493;SRR=506;SAF=322;SAR=134;SRP=3.37765;SAP=171.318;AB=0.284112;ABP=652.759;RUN=1;RPP=281.892;RPPR=137.779;RPL=349.0;RPR=107.0;EPP=64.8973;EPPR=9.58558;DPRA=0.0;ODDS=192.431;GTI=0;TYPE=snp;CIGAR=1M1X;NUMALT=2;MEANALT=10.0;LEN=1;MQM=17.0417;MQMR=35.025;PAIRED=0.991228;PAIREDR=0.98999;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=327;BaseQRankSum=4.24;Dels=0.0;FS=19.407;HaplotypeScore=364.766;MLEAC=1;MLEAF=0.5;MQ=31.81;MQRankSum=-12.874;QD=2.29;ReadPosRankSum=-6.497;SOR=1.721	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:358:235:7598:90:3027:-86.3705,0.0,-406.683:90:26:343:.:.:.:.:1:.:.:.:1.95593	0/1:129.501:1400:764:25200:366:12301:-236.261,0.0,-1320.25:475:34:1378:954,585:3586,0,15117:.:1:1:.:.:.:2.05322
chr5	1333534	.	G	C	371.479	REJECT	NS=2;DP=1584;DPB=1584.0;AC=2;AN=3;AF=0.25;RO=1225;AO=253;PRO=0.0;PAO=0.0;QR=39322;QA=8117;PQR=0.0;PQA=0.0;SRF=609;SRR=616;SAF=158;SAR=95;SRP=3.09716;SAP=37.0758;AB=0.171824;ABP=1151.76;RUN=1;RPP=399.755;RPPR=71.8043;RPL=19.0;RPR=234.0;EPP=20.3907;EPPR=23.3051;DPRA=0.0;ODDS=37.302;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=3.0;LEN=1;MQM=23.6087;MQMR=35.0376;PAIRED=0.992095;PAIREDR=0.991837;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=298;BaseQRankSum=2.273;Dels=0.01;FS=7.074;HaplotypeScore=856.617;MLEAC=1;MLEAF=0.5;MQ=35.35;MQRankSum=-6.591;QD=0.91;ReadPosRankSum=-4.714;SOR=1.361	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:125.34:356:303:9596:42:1352:0.0,-5.43654,-537.916:42:12:347:.:.:.:.:1:.:.:.:1.95593	0/1:115.437:1357:922:29726:211:6765:-84.3421,0.0,-1620.81:240:18:1295:1121,269:1399,0,18273:.:1:1:.:.:.:2.05322
chr5	1333534	.	G	A	371.479	REJECT	NS=2;DP=1584;DPB=1584.0;AC=2;AN=2;AF=0.0;RO=1225;AO=69;PRO=0.0;PAO=0.0;QR=39322;QA=2025;PQR=0.0;PQA=0.0;SRF=609;SRR=616;SAF=26;SAR=43;SRP=3.09716;SAP=12.1053;AB=0.0545603;ABP=2119.38;RUN=1;RPP=6.81824;RPPR=71.8043;RPL=29.0;RPR=40.0;EPP=16.8888;EPPR=23.3051;DPRA=0.0;ODDS=37.302;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=3.0;LEN=1;MQM=47.8406;MQMR=35.0376;PAIRED=0.956522;PAIREDR=0.991837;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:125.34:356:303:9596:2:32:0.0,-64.1233,-604.56:2:1:347:.:.:1:.:.:.:1.95593	./1:131.874:1228:922:29726:67:1993:-84.3421,-139.204,-1781.81:67:6:1200:.:.:1:.:.:.:2.05322
chr5	1333570	.	GGATGAGGATAAGGGGGGACTATTGTATACACACCA	G	.	PASS	SOMATIC;AC=1;AN=4;END=1333605;HOMLEN=21;HOMSEQ=GATGAGGATAAGGGGGGACTA;SVLEN=-35;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:1.95593	0/1:295,33:33:10:328:.:.:.:1:.:.:2.05322
chr5	1333592	.	T	C	14258.8	REJECT	NS=2;DP=2399;DPB=2399.0;AC=2;AN=4;AF=0.5;RO=1084;AO=1268;PRO=0.0;PAO=0.0;QR=34837;QA=43509;PQR=0.0;PQA=0.0;SRF=558;SRR=526;SAF=701;SAR=567;SRP=5.06158;SAP=33.7603;AB=0.528554;ABP=19.9992;RUN=1;RPP=12.388;RPPR=215.903;RPL=597.0;RPR=671.0;EPP=3.99671;EPPR=11.7363;DPRA=0.0;ODDS=720.158;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=21.5205;MQMR=41.1928;PAIRED=0.997634;PAIREDR=0.993542;technology.ILLUMINA=1.0;MQ0=383;BaseQRankSum=5.674;Dels=0.0;FS=0.0;HaplotypeScore=356.876;MLEAC=1;MLEAF=0.5;MQ=33.91;MQRankSum=-20.026;QD=5.88;ReadPosRankSum=5.986;SOR=0.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:130.472:518:246:7897:265:9007:-314.878,0.0,-474.046:265:52:511:.:.:.:.:1:.:.:.:1.95593	0/1:114.736:2001:838:26940:1003:34502:-1122.36,0.0,-1597.99:1136:57:1960:810,1270:12493,0,18062:.:1:1:.:.:.:2.05322
chr5	1333605	.	A	G	17.548	REJECT	NS=2;DP=2800;DPB=2800.0;AC=2;AN=4;AF=0.5;RO=2236;AO=543;PRO=0.0;PAO=0.0;QR=70300;QA=16516;PQR=0.0;PQA=0.0;SRF=1137;SRR=1099;SAF=344;SAR=199;SRP=4.41263;SAP=87.0899;AB=0.193929;ABP=2281.35;RUN=1;RPP=87.0899;RPPR=277.867;RPL=199.0;RPR=344.0;EPP=6.37348;EPPR=4.72339;DPRA=0.0;ODDS=1.33683;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=17.4015;MQMR=30.805;PAIRED=1.0;PAIREDR=0.994186;technology.ILLUMINA=1.0;MQ0=511;BaseQRankSum=0.678;Dels=0.0;FS=1.845;HaplotypeScore=474.172;MLEAC=1;MLEAF=0.5;MQ=31.71;MQRankSum=-12.563;QD=0.31;ReadPosRankSum=-2.157;SOR=1.201	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:17.548:606:483:15054:123:3634:-15.818,0.0,-776.234:123:20:606:.:.:.:.:1:.:.:.:1.95593	0/1:52.768625:2364:1753:55246:420:12882:-9.85124,0.0,-2868.61:513:21:2342:1904,607:825,0,30205:.:1:1:.:.:.:2.05322
chr5	1333640	.	A	G	11264.4	REJECT	NS=2;DP=3480;DPB=3480.0;AC=2;AN=4;AF=0.5;RO=2236;AO=1219;PRO=0.0;PAO=0.0;QR=68637;QA=39242;PQR=0.0;PQA=0.0;SRF=1076;SRR=1160;SAF=692;SAR=527;SRP=9.86267;SAP=51.5077;AB=0.350287;ABP=680.512;RUN=1;RPP=88.4459;RPPR=167.856;RPL=500.0;RPR=719.0;EPP=3.02633;EPPR=6.50641;DPRA=0.0;ODDS=500.049;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=22.6079;MQMR=27.0854;PAIRED=0.994258;PAIREDR=0.992844;technology.ILLUMINA=1.0;MQ0=775;BaseQRankSum=9.954;Dels=0.0;FS=7.388;HaplotypeScore=708.392;MLEAC=1;MLEAF=0.5;MQ=28.66;MQRankSum=-4.943;QD=3.17;ReadPosRankSum=-1.49;SOR=1.13	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:733:476:14650:253:7908:-221.576,0.0,-596.596:253:35:729:.:.:.:.:1:.:.:.:1.95593	0/1:129.501:3074:1760:53987:966:31334:-925.534,0.0,-2341.99:1111:36:3050:2118,1256:10815,0,24009:.:1:1:.:.:.:2.05322
chr5	1333690	.	GA	G	7943.98	REJECT	NS=2;DP=3028;DPB=2903.33;AC=2;AN=3;AF=0.25;RO=1448;AO=737;PRO=80.0;PAO=96.0;QR=49233;QA=23290;PQR=2239.33;PQA=2825.83;SRF=623;SRR=825;SAF=356;SAR=381;SRP=64.2014;SAP=4.85178;AB=0.243395;ABP=1734.82;RUN=1;RPP=79.3831;RPPR=5.65566;RPL=449.0;RPR=288.0;EPP=3.67323;EPPR=12.608;DPRA=0.0;ODDS=23.304;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=2;MEANALT=13.5;LEN=1;MQM=21.8711;MQMR=39.0815;PAIRED=0.995929;PAIREDR=0.986188;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:101.185:634:314:10426:120:3663:-114.269,-21.1315,-666.224:120:20:608:.:.:1:.:.:.:1.95593	0/1:124.017:2394:1134:38807:617:19627:-705.976,0.0,-2433.5:617:27:2320:.:.:1:.:.:.:2.05322
chr5	1333691	.	A	G	7943.98	REJECT	NS=2;DP=3028;DPB=2903.33;AC=2;AN=3;AF=0.25;RO=1448;AO=743;PRO=80.0;PAO=96.0;QR=49233;QA=12643;PQR=2239.33;PQA=2825.83;SRF=623;SRR=825;SAF=447;SAR=296;SRP=64.2014;SAP=69.6479;AB=0.245376;ABP=1708.18;RUN=1;RPP=338.875;RPPR=5.65566;RPL=541.0;RPR=202.0;EPP=88.4693;EPPR=12.608;DPRA=0.0;ODDS=23.304;GTI=0;TYPE=snp;CIGAR=1M1X1M;NUMALT=2;MEANALT=13.5;LEN=1;MQM=21.3109;MQMR=39.0815;PAIRED=0.995962;PAIREDR=0.986188;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:101.185:634:314:10426:174:2700:-114.269,0.0,-654.697:174:29:608:.:.:1:.:.:.:1.95593	./1:124.017:2394:1134:38807:569:9943:-705.976,-225.434,-2727.85:569:25:2320:.:.:1:.:.:.:2.05322
chr5	1333702	.	T	C	1046.77	PASS	SOMATIC;DP=2439;AC=1;AN=4;AF=0.5;MQ0=299;BaseQRankSum=-3.092;Dels=0.0;FS=2.016;HaplotypeScore=340.723;MLEAC=1;MLEAF=0.5;MQ=34.84;MQRankSum=0.918;QD=0.43;ReadPosRankSum=2.128;SOR=0.569	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:1.95593	0/1:2099,259:2439:99.0:1075,0,42545:259:11:2358:.:1:.:.:.:.:2.05322
chr5	1333748	.	G	T	505.77	PASS	DP=181;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.706;FS=3.062;MLEAC=1;MLEAF=0.5;MQ=46.63;MQRankSum=0.326;QD=2.79;ReadPosRankSum=3.671;SOR=0.381;ClippingRankSum=-0.738	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:155,26:181:99.0:534,0,5516:26:14:181:1:.:.:.:.:.:1.95593	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:2.05322
chr5	1333753	.	A	AG	1293.5	REJECT	NS=2;DP=1093;DPB=1308.5;AC=2;AN=4;AF=0.5;RO=714;AO=261;PRO=134.5;PAO=146.5;QR=25517;QA=5588;PQR=4307.5;PQA=4733.5;SRF=326;SRR=388;SAF=55;SAR=206;SRP=14.701;SAP=192.71;AB=0.238792;ABP=650.759;RUN=1;RPP=527.167;RPPR=224.719;RPL=256.0;RPR=5.0;EPP=187.719;EPPR=45.3571;DPRA=0.0;ODDS=31.2458;GTI=0;TYPE=ins;CIGAR=1M1I7M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=23.2759;MQMR=41.5378;PAIRED=1.0;PAIREDR=0.992997;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:127.188:261:163:5832:68:1270:-43.6983,0.0,-396.687:68:28:246:.:.:1:.:.:.:1.95593	0/1:160.002:832:551:19685:193:4318:-198.81,0.0,-1320.82:193:25:785:.:.:1:.:.:.:2.05322
chr5	1333755	.	GGGG	CGGGA	1293.5	REJECT	NS=2;DP=1093;DPB=1308.5;AC=2;AN=2;AF=0.0;RO=714;AO=56;PRO=134.5;PAO=43.0;QR=25517;QA=1394;PQR=4307.5;PQA=1320.0;SRF=326;SRR=388;SAF=30;SAR=26;SRP=14.701;SAP=3.63072;AB=0.0512351;ABP=1914.94;RUN=1;RPP=124.613;RPPR=224.719;RPL=0.0;RPR=56.0;EPP=3.63072;EPPR=45.3571;DPRA=0.0;ODDS=31.2458;GTI=0;TYPE=complex;CIGAR=2M1I3M1X2M;NUMALT=2;MEANALT=15.0;LEN=9;MQM=35.0179;MQMR=41.5378;PAIRED=1.0;PAIREDR=0.992997;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.188:261:163:5832:15:405:-43.6983,-60.0564,-579.285:15:6:246:.:.:1:.:.:.:1.95593	./1:160.002:832:551:19685:41:989:-198.81,-317.479,-2214.21:41:5:785:.:.:1:.:.:.:2.05322
chr5	1333774	.	CC	TT	444.77	PASS	DP=111;AC=1;AN=4;AF=0.5;JOINED;BaseQRankSum=-2.1;FS=10.101;MLEAC=1;MLEAF=0.5;MQ=48.4;MQRankSum=-0.618;QD=4.01;ReadPosRankSum=-1.339;SOR=0.365;ClippingRankSum=0.463	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:94,17:111:99.0:473,0,3887:17:15:111:1:.:.:.:.:.:1.95593	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:2.05322
chr5	1333774	.	CCGGC	TTGGA	11084.6	REJECT	NS=2;DP=862;DPB=906.0;AC=2;AN=2;AF=0.0;RO=192;AO=21;PRO=42.5;PAO=0.0;QR=6678;QA=675;PQR=1361.5;PQA=0.0;SRF=84;SRR=108;SAF=9;SAR=12;SRP=9.52472;SAP=3.94093;AB=0.0243619;ABP=1696.86;RUN=1;RPP=40.3389;RPPR=134.927;RPL=20.0;RPR=1.0;EPP=5.59539;EPPR=14.5915;DPRA=0.0;ODDS=118.945;GTI=0;TYPE=complex;CIGAR=2X2M1X;NUMALT=2;MEANALT=13.5;LEN=5;MQM=39.4762;MQMR=44.2969;PAIRED=1.0;PAIREDR=0.989583;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:135.405:199:37:1253:14:446:-272.113,-259.256,-423.411:14:7:191:.:.:1:.:.:.:1.95593	./1:135.405:663:155:5425:7:229:-863.839,-915.86,-1555.84:7:1:620:.:.:1:.:.:.:2.05322
chr5	1333778	.	C	A	11084.6	REJECT	NS=2;DP=817;DPB=906.0;AC=2;AN=4;AF=0.5;RO=192;AO=598;PRO=42.5;PAO=43.5;QR=6678;QA=19524;PQR=1361.5;PQA=1388.5;SRF=84;SRR=108;SAF=289;SAR=309;SRP=9.52472;SAP=4.46279;AB=0.693735;ABP=284.032;RUN=1;RPP=163.147;RPPR=134.927;RPL=404.0;RPR=194.0;EPP=45.3649;EPPR=14.5915;DPRA=0.0;ODDS=118.945;GTI=0;TYPE=snp;CIGAR=4M1X;NUMALT=2;MEANALT=13.5;LEN=1;MQM=35.3194;MQMR=44.2969;PAIRED=0.996656;PAIREDR=0.989583;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=114;BaseQRankSum=1.0055;Dels=0.0;FS=4.0015;HaplotypeScore=268.407;MLEAC=1;MLEAF=0.5;MQ=43.07;MQRankSum=-3.4165;QD=17.96;ReadPosRankSum=-2.4335;SOR=0.4515;ClippingRankSum=0.621	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2025:150:37:1253:140:4603:-272.113,0.0,-55.8696:106:72:146:30,72:2223,0,921:1:.:1:.:.:.:1.95593	0/1:117.2025:718:155:5425:458:14921:-863.839,0.0,-257.144:512:74:690:194,567:11323,0,2698:.:1:1:.:.:.:2.05322
chr5	1333779	.	T	A	1721.69	REJECT	NS=2;DP=865;DPB=865.0;AC=2;AN=4;AF=0.5;RO=688;AO=167;PRO=0.0;PAO=0.0;QR=23306;QA=5044;PQR=0.0;PQA=0.0;SRF=308;SRR=380;SAF=97;SAR=70;SRP=19.3721;SAP=12.4894;AB=0.193064;ABP=710.838;RUN=1;RPP=219.39;RPPR=748.494;RPL=19.0;RPR=148.0;EPP=5.20778;EPPR=46.9574;DPRA=0.0;ODDS=116.13;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=42.6527;MQMR=35.0945;PAIRED=1.0;PAIREDR=0.994186;technology.ILLUMINA=1.0;MQ0=114;BaseQRankSum=-3.59;Dels=0.0;FS=1.453;HaplotypeScore=236.846;MLEAC=1;MLEAF=0.5;MQ=38.05;MQRankSum=3.712;QD=2.66;ReadPosRankSum=3.293;SOR=0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:136.272:200:155:5361:41:1298:-57.9173,0.0,-313.802:41:21:196:.:.:.:.:1:.:.:.:1.95593	0/1:117.636:719:533:17945:126:3746:-145.725,0.0,-1009.62:127:18:713:638,129:2088,0,12055:.:1:1:.:.:.:2.05322
chr5	1333803	.	G	T	3859.65	REJECT	NS=2;DP=825;DPB=830.0;AC=2;AN=4;AF=0.5;RO=465;AO=317;PRO=0.0;PAO=0.0;QR=13946;QA=10148;PQR=0.0;PQA=0.0;SRF=244;SRR=221;SAF=138;SAR=179;SRP=5.48064;SAP=14.5253;AB=0.381928;ABP=103.515;RUN=1;RPP=167.583;RPPR=226.98;RPL=236.0;RPR=81.0;EPP=3.56516;EPPR=3.23912;DPRA=0.0;ODDS=195.135;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=29.0095;MQMR=34.1376;PAIRED=0.993691;PAIREDR=0.997849;technology.ILLUMINA=1.0;MQ0=207;BaseQRankSum=2.3725;Dels=0.0;FS=4.986;HaplotypeScore=249.265;MLEAC=1;MLEAF=0.5;MQ=41.02;MQRankSum=-2.316;QD=14.925;ReadPosRankSum=-6.1215;SOR=1.183;ClippingRankSum=-0.046	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:112:3251:72:2254:-90.5117,0.0,-179.762:53:51:118:19,34:1390,0,450:1:.:1:.:.:.:1.95593	0/1:129.501:728:353:10695:245:7894:-326.221,0.0,-559.357:285:42:672:421,326:3827,0,6322:.:1:1:.:.:.:2.05322
chr5	1333810	.	CGCAA	GGGAT	3023.65	REJECT	NS=2;DP=752;DPB=818.8;AC=2;AN=2;AF=0.0;RO=278;AO=43;PRO=34.1667;PAO=52.0;QR=9275;QA=1344;PQR=961.167;PQA=1378.0;SRF=162;SRR=116;SAF=29;SAR=14;SRP=19.5385;SAP=14.3727;AB=0.0571809;ABP=1283.82;RUN=1;RPP=39.8243;RPPR=5.54108;RPL=8.0;RPR=35.0;EPP=9.12072;EPPR=8.29057;DPRA=0.0;ODDS=84.6119;GTI=0;TYPE=complex;CIGAR=1X1M1X1M1X;NUMALT=3;MEANALT=25.5;LEN=5;MQM=10.093;MQMR=48.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:139.46:181:72:2292:13:383:-110.627,-47.7783,-323.165:13:8:156:.:.:1:.:.:.:1.95593	./1:139.46:571:206:6983:30:961:-246.449,-151.755,-1001.79:30:6:479:.:.:1:.:.:.:2.05322
chr5	1333812	.	C	G	2411.21	REJECT	NS=2;DP=752;DPB=818.8;AC=2;AN=2;AF=0.25;RO=278;AO=49;PRO=34.1667;PAO=35.6667;QR=9275;QA=600;PQR=961.167;PQA=923.167;SRF=162;SRR=116;SAF=14;SAR=35;SRP=19.5385;SAP=22.5536;AB=0.0651596;ABP=1238.08;RUN=1;RPP=22.5536;RPPR=5.54108;RPL=14.0;RPR=35.0;EPP=92.7497;EPPR=8.29057;DPRA=0.0;ODDS=84.6119;GTI=0;TYPE=snp;CIGAR=2M1X2M;NUMALT=3;MEANALT=25.5;LEN=1;MQM=20.8571;MQMR=48.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=236;ALERT;BaseQRankSum=1.9805;Dels=0.0;FS=4.0345;HaplotypeScore=254.432;MLEAC=1;MLEAF=0.5;MQ=39.79;MQRankSum=-9.406;QD=7.6;ReadPosRankSum=-4.9465;SOR=1.0295;ClippingRankSum=1.412	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:119.23:111:72:2292:10:132:-110.627,-120.088,-291.955:13:22:99:26,16:570,0,1167:1:.:1:.:.:.:1.95593	./1:119.23:676:206:6983:39:468:-246.449,-264.126,-783.232:287:39:618:222,536:1827,0,5066:.:1:1:.:.:.:2.05322
chr5	1333812	.	CAA	GAT	3023.65	REJECT	NS=2;DP=752;DPB=818.8;AC=2;AN=4;AF=0.5;RO=278;AO=265;PRO=34.1667;PAO=70.1667;QR=9275;QA=7647;PQR=961.167;PQA=1933.67;SRF=162;SRR=116;SAF=120;SAR=145;SRP=19.5385;SAP=8.1317;AB=0.352394;ABP=145.323;RUN=1;RPP=403.225;RPPR=5.54108;RPL=22.0;RPR=243.0;EPP=16.7848;EPPR=8.29057;DPRA=0.0;ODDS=84.6119;GTI=0;TYPE=complex;CIGAR=2M1X1M1X;NUMALT=3;MEANALT=25.5;LEN=5;MQM=12.4755;MQMR=48.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:139.46:181:72:2292:61:1708:-110.627,0.0,-169.818:61:39:156:.:.:1:.:.:.:1.95593	0/1:139.46:571:206:6983:204:5939:-246.449,0.0,-517.613:204:43:479:.:.:1:.:.:.:2.05322
chr5	1333813	.	A	C	507.77	PASS	DP=44;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.695;FS=6.828;MLEAC=1;MLEAF=0.5;MQ=50.78;MQRankSum=-3.013;QD=11.54;ReadPosRankSum=-2.037;SOR=1.821;ClippingRankSum=-0.085	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:28,16:44:99.0:536,0,1137:16:36:44:1:.:.:.:.:.:1.95593	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:2.05322
chr5	1333814	.	A	T	931.77	PASS	DP=465;AC=2;AN=4;AF=0.5;MQ0=253;ALERT;BaseQRankSum=1.1505;Dels=0.0;FS=1.6515;HaplotypeScore=231.164;MLEAC=1;MLEAF=0.5;MQ=39.33;MQRankSum=-9.302;QD=6.405;ReadPosRankSum=-5.1865;SOR=1.0395;ClippingRankSum=1.031	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:29,16:45:99.0:536,0,1137:16:36:45:1:.:.:.:.:.:1.95593	0/1:312,539:885:99.0:1384,0,6319:539:63:851:.:1:.:.:.:.:2.05322
chr5	1333880	.	C	G	138.77	PASS	SOMATIC;DP=3041;AC=1;AN=4;AF=0.5;MQ0=975;BaseQRankSum=-7.724;Dels=0.0;FS=0.859;HaplotypeScore=642.661;MLEAC=1;MLEAF=0.5;MQ=23.4;MQRankSum=-3.075;QD=0.05;ReadPosRankSum=1.944;SOR=0.618	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:1.95593	0/1:2480,391:3041:99.0:167,0,21182:391:14:2871:.:1:.:.:.:.:2.05322
chr5	1334507	.	GA	G	9383.515	REJECT	NS=2;DP=422;DPB=501.111;AC=2;AN=4;AF=0.5;RO=100;AO=326;PRO=74.0;PAO=94.0;QR=3768;QA=11875;PQR=2580.5;PQA=3353.5;SRF=36;SRR=64;SAF=130;SAR=196;SRP=20.0346;SAP=32.0254;AB=0.739229;ABP=222.231;RUN=1;RPP=5.67468;RPPR=3.09716;RPL=153.0;RPR=173.0;EPP=18.3571;EPPR=3.79203;DPRA=0.0;ODDS=141.868;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.1534;MQMR=60.0;PAIRED=0.993865;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.34;FS=2.2265;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.2385;QD=15.465;RPA=9,8;RU=A;ReadPosRankSum=0.184;SOR=0.522;STR;ClippingRankSum=-0.183	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.1695:113:57:2146:53:1876:-144.967,0.0,-168.956:53:47:112:60,54:1280,0,1363:1:.:1:.:.:.:0.000150648	0/1:116.1695:366:43:1622:273:9999:-885.544,0.0,-63.0306:287:85:335:53,301:8610,0,447:.:1:1:.:.:.:-6.50323e-05
chr5	1334729	.	C	T	856.9114999999999	REJECT	NS=2;DP=130;DPB=150.0;AC=2;AN=4;AF=0.5;RO=108;AO=42;PRO=0.0;PAO=0.0;QR=4032;QA=1526;PQR=0.0;PQA=0.0;SRF=54;SRR=54;SAF=15;SAR=27;SRP=3.0103;SAP=10.4553;AB=0.28;ABP=66.0699;RUN=1;RPP=3.83753;RPPR=3.09072;RPL=23.0;RPR=19.0;EPP=8.18047;EPPR=45.5551;DPRA=0.0;ODDS=64.6719;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8148;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.68;Dels=0.0;FS=4.1425;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=59.925;MQRankSum=-0.7185;QD=12.235;ReadPosRankSum=0.073;SOR=1.252;ClippingRankSum=1.271	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.367:39:16:584:24:870:-67.5993,0.0,-41.8182:23:59:39:16,23:837,0,534:1:.:1:.:.:.:0.000150648	0/1:121.367:110:92:3448:18:656:-29.271,0.0,-280.418:18:16:110:92,18:439,0,3506:.:1:1:.:.:.:-6.50323e-05
chr5	1334869	.	A	AAAAC	486.624	REJECT	NS=2;DP=167;DPB=320.429;AC=2;AN=4;AF=0.5;RO=128;AO=25;PRO=156.5;PAO=145.5;QR=4839;QA=923;PQR=5666.0;PQA=5231.0;SRF=73;SRR=55;SAF=15;SAR=10;SRP=8.50684;SAP=5.18177;AB=0.149701;ABP=181.006;RUN=1;RPP=7.26639;RPPR=38.9075;RPL=9.0;RPR=16.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=11.9685;GTI=0;TYPE=ins;CIGAR=1M4I41M;NUMALT=1;MEANALT=7.0;LEN=4;MQM=58.12;MQMR=60.0;PAIRED=0.96;PAIREDR=0.992188;technology.ILLUMINA=1.0;END=1334869;HOMLEN=30;HOMSEQ=AAACAAACAAACAAACAAACAAACAAACAA;SVLEN=4;SVTYPE=INS;BaseQRankSum=0.472;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-0.665;QD=11.5;ReadPosRankSum=-0.98;SOR=0.999;ClippingRankSum=-1.434	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,34:23:43:54:117.096:49:28:1038:14:536:-47.6683,0.0,-87.0839:900,0,1529:1:.:1:1:.:.:0.000150648	0/1:156,30:20:13:148:51.9786:123:100:3801:11:387:-6.53335,0.0,-358.81:.:.:.:1:1:.:.:-6.50323e-05
chr5	1335385	.	CTG	C	1421.96	REJECT	NS=2;DP=297;DPB=305.556;AC=2;AN=4;AF=0.5;RO=226;AO=69;PRO=33.0;PAO=28.0;QR=8411;QA=2504;PQR=1025.0;PQA=857.0;SRF=104;SRR=122;SAF=29;SAR=40;SRP=6.12338;SAP=6.81824;AB=0.232323;ABP=187.849;RUN=1;RPP=5.55942;RPPR=3.0103;RPL=30.0;RPR=39.0;EPP=14.3712;EPPR=6.85361;DPRA=0.0;ODDS=108.684;GTI=0;TYPE=del;CIGAR=1M2D6M;NUMALT=1;MEANALT=2.0;LEN=2;MQM=60.1449;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=1335387;HOMLEN=4;HOMSEQ=TGTG;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=-1.407;FS=2.997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.49;QD=18.56;ReadPosRankSum=-1.146;SOR=0.715;ClippingRankSum=0.969	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52,51:41:51:76:129.501:73:34:1233:36:1332:-100.693,0.0,-95.0488:1522,0,1283:1:.:1:1:.:.:0.000150648	0/1:234,56:44:17:257:160.002:226:192:7178:33:1172:-48.6245,0.0,-600.856:.:.:.:1:1:.:.:-6.50323e-05
chr5	1336178	.	A	T	1082.935	REJECT	NS=2;DP=232;DPB=266.0;AC=2;AN=4;AF=0.5;RO=208;AO=58;PRO=0.0;PAO=0.0;QR=7921;QA=2195;PQR=0.0;PQA=0.0;SRF=89;SRR=119;SAF=33;SAR=25;SRP=12.4061;SAP=5.40641;AB=0.218045;ABP=186.687;RUN=1;RPP=3.16006;RPPR=3.67845;RPL=28.0;RPR=30.0;EPP=32.3626;EPPR=4.05428;DPRA=0.0;ODDS=98.81;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985577;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.001;Dels=0.0;FS=3.5605;HaplotypeScore=9.6564;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8275;QD=9.295;ReadPosRankSum=0.3715;SOR=0.792;ClippingRankSum=-0.719	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.3455:65:37:1425:29:1093:-80.5402,0.0,-110.455:29:44:65:36,29:1024,0,1287:1:.:1:.:.:.:0.000150648	0/1:121.3455:199:171:6496:29:1102:-44.9715,0.0,-530.248:29:15:199:170,29:678,0,6615:.:1:1:.:.:.:-6.50323e-05
chr5	1336221	.	T	C	1089.125	REJECT	NS=2;DP=223;DPB=258.0;AC=2;AN=4;AF=0.5;RO=203;AO=55;PRO=0.0;PAO=0.0;QR=7744;QA=2069;PQR=0.0;PQA=0.0;SRF=91;SRR=112;SAF=34;SAR=21;SRP=7.72764;SAP=9.68264;AB=0.213178;ABP=187.367;RUN=1;RPP=3.04978;RPPR=3.10657;RPL=28.0;RPR=27.0;EPP=17.2631;EPPR=3.87675;DPRA=0.0;ODDS=87.3007;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980296;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.206;Dels=0.0;FS=5.1465;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3505;QD=9.45;ReadPosRankSum=0.0325;SOR=1.051;ClippingRankSum=0.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:40:1519:28:1057:-76.7649,0.0,-118.36:28:41:68:40,28:1116,0,2099:1:.:1:.:.:.:0.000150648	0/1:129.501:189:163:6225:27:1012:-39.588,0.0,-508.955:27:14:189:162,27:577,0,6341:.:1:1:.:.:.:-6.50323e-05
chr5	1336243	.	A	G	1052.19	REJECT	NS=2;DP=231;DPB=267.0;AC=2;AN=4;AF=0.5;RO=215;AO=52;PRO=0.0;PAO=0.0;QR=8298;QA=2038;PQR=0.0;PQA=0.0;SRF=97;SRR=118;SAF=25;SAR=27;SRP=7.46434;SAP=3.17734;AB=0.194757;ABP=219.092;RUN=1;RPP=5.68288;RPPR=5.92916;RPL=30.0;RPR=22.0;EPP=7.18621;EPPR=6.65635;DPRA=0.0;ODDS=61.5446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981395;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7155;Dels=0.0;FS=4.431;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2345;QD=8.56;ReadPosRankSum=0.5565;SOR=1.0635;ClippingRankSum=-0.095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9825:70:41:1596:29:1137:-83.4103,0.0,-124.731:29:41:70:41,29:1085,0,2124:1:.:1:.:.:.:0.000150648	0/1:119.9825:196:174:6702:23:901:-27.6764,0.0,-549.555:23:12:196:173,23:424,0,6880:.:1:1:.:.:.:-6.50323e-05
chr5	1336459	.	T	C	1460.185	REJECT	NS=2;DP=292;DPB=338.0;AC=2;AN=4;AF=0.5;RO=263;AO=75;PRO=0.0;PAO=0.0;QR=9853;QA=2813;PQR=0.0;PQA=0.0;SRF=139;SRR=124;SAF=35;SAR=40;SRP=4.86802;SAP=3.73412;AB=0.221893;ABP=230.077;RUN=1;RPP=3.73412;RPPR=3.41487;RPL=40.0;RPR=35.0;EPP=3.27088;EPPR=4.40566;DPRA=0.0;ODDS=85.0332;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986667;PAIREDR=0.996198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3725;Dels=0.0;FS=0.765;HaplotypeScore=6.8435;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.018;QD=8.815;ReadPosRankSum=-0.262;SOR=0.743;ClippingRankSum=0.616	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.356:89:47:1747:44:1650:-123.888,0.0,-132.635:43:48:89:45,42:1388,0,1593:1:.:1:.:.:.:0.000150648	0/1:119.356:247:216:8106:31:1163:-37.7526,0.0,-662.313:31:13:247:216,31:567,0,8310:.:1:1:.:.:.:-6.50323e-05
chr5	1336626	.	T	A	1897.815	REJECT	NS=2;DP=349;DPB=399.0;AC=2;AN=4;AF=0.5;RO=305;AO=93;PRO=0.0;PAO=0.0;QR=11683;QA=3505;PQR=0.0;PQA=0.0;SRF=158;SRR=147;SAF=57;SAR=36;SRP=3.87177;SAP=13.3073;AB=0.233083;ABP=249.921;RUN=1;RPP=4.15441;RPPR=3.35916;RPL=43.0;RPR=50.0;EPP=13.3073;EPPR=5.58047;DPRA=0.0;ODDS=112.057;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4885;Dels=0.0;FS=5.878;HaplotypeScore=10.6084;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2505;QD=10.595;ReadPosRankSum=-1.12;SOR=1.215;ClippingRankSum=1.735	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.979:97:45:1758:55:2074:-159.59,0.0,-131.137:53:54:97:44,51:1825,0,1602:1:.:1:.:.:.:0.000150648	0/1:118.979:299:260:9925:38:1431:-48.0149,0.0,-812.038:38:13:298:260,38:711,0,10186:.:1:1:.:.:.:-6.50323e-05
chr5	1337070	.	T	C	2039.515	REJECT	NS=2;DP=408;DPB=470.0;AC=2;AN=4;AF=0.5;RO=368;AO=101;PRO=0.0;PAO=0.0;QR=13889;QA=3800;PQR=0.0;PQA=0.0;SRF=186;SRR=182;SAF=46;SAR=55;SRP=3.10471;SAP=4.75178;AB=0.214894;ABP=334.848;RUN=1;RPP=6.64375;RPPR=11.531;RPL=44.0;RPR=57.0;EPP=5.61177;EPPR=4.16685;DPRA=0.0;ODDS=124.6;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.452;Dels=0.0;FS=1.9505;HaplotypeScore=12.6306;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8225;QD=9.435;ReadPosRankSum=0.5945;SOR=0.8435;ClippingRankSum=-0.018	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5815:122:65:2469:57:2146:-160.077,0.0,-189.155:57:47:121:64,57:2022,0,2297:1:.:1:.:.:.:0.000150648	0/1:118.5815:346:303:11420:44:1654:-54.8452,0.0,-933.212:44:13:346:302,44:854,0,11665:.:1:1:.:.:.:-6.50323e-05
chr5	1337106	.	T	A	2207.745	REJECT	NS=2;DP=440;DPB=511.0;AC=2;AN=4;AF=0.5;RO=399;AO=111;PRO=0.0;PAO=0.0;QR=14933;QA=4109;PQR=0.0;PQA=0.0;SRF=208;SRR=191;SAF=51;SAR=60;SRP=4.58312;SAP=4.59489;AB=0.217221;ABP=357.929;RUN=1;RPP=6.31642;RPPR=3.45113;RPL=62.0;RPR=49.0;EPP=3.18637;EPPR=14.0309;DPRA=0.0;ODDS=129.112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1905;Dels=0.0;FS=4.799;HaplotypeScore=6.8003;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.238;QD=9.05;ReadPosRankSum=-0.4205;SOR=0.8945;ClippingRankSum=-0.974	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:137:74:2786:64:2361:-175.115,0.0,-213.324:64:46:137:72,64:2189,0,2563:1:.:1:.:.:.:0.000150648	0/1:129.501:371:325:12147:47:1748:-56.5258,0.0,-991.863:47:13:370:322,47:847,0,12359:.:1:1:.:.:.:-6.50323e-05
chr5	1337906	.	A	T	2254.325	REJECT	NS=2;DP=375;DPB=440.0;AC=2;AN=4;AF=0.5;RO=330;AO=110;PRO=0.0;PAO=0.0;QR=12428;QA=4036;PQR=0.0;PQA=0.0;SRF=167;SRR=163;SAF=57;SAR=53;SRP=3.11558;SAP=3.32615;AB=0.25;ABP=241.872;RUN=1;RPP=3.08926;RPPR=3.43143;RPL=54.0;RPR=56.0;EPP=4.2737;EPPR=14.6178;DPRA=0.0;ODDS=163.503;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.3375;Dels=0.0;FS=4.5535;HaplotypeScore=8.9103;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.182;QD=9.9;ReadPosRankSum=0.3815;SOR=0.58;ClippingRankSum=-0.16	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:65:2429:64:2312:-173.136,0.0,-183.717:64:50:128:64,64:2151,0,2250:1:.:1:.:.:.:0.000150648	0/1:129.501:310:265:9999:46:1724:-71.2764,0.0,-815.159:46:15:310:264,46:1031,0,10176:.:1:1:.:.:.:-6.50323e-05
chr5	1338523	.	TG	T	2253.12	REJECT	NS=2;DP=414;DPB=458.308;AC=2;AN=4;AF=0.5;RO=292;AO=106;PRO=62.5;PAO=48.5;QR=10884;QA=3792;PQR=2055.5;PQA=1578.5;SRF=143;SRR=149;SAF=54;SAR=52;SRP=3.27802;SAP=3.09224;AB=0.256039;ABP=217.031;RUN=1;RPP=8.25461;RPPR=4.91406;RPL=45.0;RPR=61.0;EPP=19.071;EPPR=5.41974;DPRA=0.0;ODDS=226.029;GTI=0;TYPE=del;CIGAR=1M1D11M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=60.283;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993151;technology.ILLUMINA=1.0;BaseQRankSum=-0.583;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-0.184;QD=10.31;ReadPosRankSum=0.066;SOR=0.659;ClippingRankSum=0.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2675:108:52:1901:50:1774:-134.853,0.0,-152.594:52:49:105:55,54:1254,0,1262:1:.:1:.:.:.:0.000150648	0/1:141.535:307:240:8983:56:2018:-98.2342,0.0,-760.97:56:19:296:.:.:.:.:1:.:.:.:-6.50323e-05
chr5	1339985	.	C	A	629.001	REJECT	NS=2;DP=558;DPB=558.0;AC=1;AN=4;AF=0.25;RO=463;AO=94;PRO=0.0;PAO=0.0;QR=16879;QA=3238;PQR=0.0;PQA=0.0;SRF=218;SRR=245;SAF=47;SAR=47;SRP=6.42931;SAP=3.0103;AB=0.416058;ABP=11.395;RUN=1;RPP=3.84193;RPPR=8.11772;RPL=44.0;RPR=50.0;EPP=26.6655;EPPR=29.3916;DPRA=0.0;ODDS=81.0532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=23.9043;MQMR=28.622;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.364;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=35.75;MQRankSum=-1.545;QD=9.84;ReadPosRankSum=1.019;SOR=0.813;ClippingRankSum=1.718	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4245:109:79:2761:57:1959:-68.8742,0.0,-125.146:45:42:108:47,34:825,0,1399:1:.:1:.:.:.:0.000150648	0/0:135.849:421:384:14118:37:1279:0.0,-33.1474,-820.851:37:9:421:.:.:.:.:0:.:.:.:-6.50323e-05
chr5	4510772	.	C	T	7913.425	REJECT	NS=2;DP=329;DPB=371.0;AC=3;AN=4;AF=0.75;RO=96;AO=274;PRO=0.0;PAO=0.0;QR=3657;QA=10498;PQR=0.0;PQA=0.0;SRF=59;SRR=37;SAF=181;SAR=93;SRP=13.9581;SAP=64.3821;AB=0.666667;ABP=72.4974;RUN=1;RPP=6.18033;RPPR=3.10078;RPL=127.0;RPR=147.0;EPP=10.1429;EPPR=4.45795;DPRA=0.0;ODDS=44.4837;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99635;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.527;Dels=0.0;FS=3.345;HaplotypeScore=2.9573;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.4365;QD=28.09;ReadPosRankSum=-0.277;SOR=1.083;ClippingRankSum=0.706	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:82:1:39:82:3125:-277.837,-18.9805,0.0:81:99:82:1,80:3351,200,0:1:.:1:.:.:.:0.000150648	0/1:129.501:288:95:3618:192:7373:-585.438,0.0,-247.724:192:67:287:95,192:7354,0,3219:.:1:1:.:.:.:-6.50323e-05
chr5	25520017	.	T	A	3795.06	REJECT	NS=2;DP=251;DPB=284.0;AC=2;AN=4;AF=0.5;RO=148;AO=136;PRO=0.0;PAO=0.0;QR=5692;QA=5331;PQR=0.0;PQA=0.0;SRF=40;SRR=108;SAF=41;SAR=95;SRP=70.8541;SAP=49.5692;AB=0.478873;ABP=4.11133;RUN=1;RPP=42.9271;RPPR=11.4614;RPL=93.0;RPR=43.0;EPP=7.09778;EPPR=6.76636;DPRA=0.0;ODDS=197.686;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992647;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3935;Dels=0.0;FS=1.788;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.087;QD=18.24;ReadPosRankSum=1.6335;SOR=0.5105;ClippingRankSum=0.148	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5535:64:30:1178:35:1378:-106.47,0.0,-88.4589:35:54:64:29,35:1273,0,1016:1:.:1:.:.:.:0.000150648	0/1:119.5535:218:118:4514:101:3953:-296.274,0.0,-346.741:100:46:218:118,100:3741,0,4385:.:1:1:.:.:.:-6.50323e-05
chr5	30031011	.	C	G	1816.0	REJECT	NS=2;DP=396;DPB=444.0;AC=2;AN=4;AF=0.5;RO=350;AO=94;PRO=0.0;PAO=0.0;QR=13384;QA=3562;PQR=0.0;PQA=0.0;SRF=163;SRR=187;SAF=40;SAR=54;SRP=6.58392;SAP=7.53805;AB=0.211712;ABP=323.527;RUN=1;RPP=3.1027;RPPR=6.01314;RPL=46.0;RPR=48.0;EPP=10.4949;EPPR=11.051;DPRA=0.0;ODDS=112.401;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991429;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0025;Dels=0.0;FS=2.412;HaplotypeScore=4.8463;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.129;QD=10.245;ReadPosRankSum=-0.0885;SOR=0.894;ClippingRankSum=-0.45	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9045:93:44:1684:51:1958:-150.507,0.0,-125.853:50:54:93:42,49:1725,0,1449:1:.:1:.:.:.:0.000150648	0/1:118.9045:348:306:11700:43:1604:-49.7786,0.0,-957.819:43:12:348:305,43:741,0,11987:.:1:1:.:.:.:-6.50323e-05
chr5	35857177	.	G	C	5995.325000000001	REJECT	NS=2;DP=277;DPB=310.0;AC=3;AN=4;AF=0.75;RO=96;AO=214;PRO=0.0;PAO=0.0;QR=3635;QA=8162;PQR=0.0;PQA=0.0;SRF=38;SRR=58;SAF=69;SAR=145;SRP=12.0581;SAP=61.6198;AB=0.606557;ABP=27.0745;RUN=1;RPP=81.5892;RPPR=16.0391;RPL=151.0;RPR=63.0;EPP=3.37559;EPPR=8.80089;DPRA=0.0;ODDS=42.2111;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.7917;PAIRED=0.995327;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.793;Dels=0.0;FS=5.722;HaplotypeScore=6.7819;MLEAC=1;MLEAF=0.75;MQ=59.965;MQRankSum=0.333;QD=29.85;ReadPosRankSum=0.612;SOR=1.211	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.15:66:0:0:66:2540:-228.775,-17.9061,0.0:66:100:66:0,66:2583,198,0:1:.:1:.:.:.:0.000150648	0/1:121.15:244:96:3635:148:5622:-439.633,0.0,-260.933:148:61:244:96,148:5532,0,3353:.:1:1:.:.:.:-6.50323e-05
chr5	35861068	.	T	C	8570.535	REJECT	NS=2;DP=373;DPB=424.0;AC=3;AN=4;AF=0.75;RO=118;AO=306;PRO=0.0;PAO=0.0;QR=4535;QA=11530;PQR=0.0;PQA=0.0;SRF=46;SRR=72;SAF=121;SAR=185;SRP=15.4503;SAP=32.0768;AB=0.637771;ABP=56.2618;RUN=1;RPP=3.12384;RPPR=5.66023;RPL=151.0;RPR=155.0;EPP=20.7511;EPPR=7.72129;DPRA=0.0;ODDS=60.7379;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9525;Dels=0.0;FS=0.0;HaplotypeScore=7.8319;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.005;QD=27.99;ReadPosRankSum=0.3475;SOR=0.571;ClippingRankSum=1.487	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:1:16:100:3733:-334.542,-25.8869,0.0:99:99:100:1,98:3932,287,0:1:.:1:.:.:.:0.000150648	0/1:129.501:323:117:4519:206:7797:-613.828,0.0,-318.99:206:64:323:117,206:7791,0,4078:.:1:1:.:.:.:-6.50323e-05
chr5	35871190	.	G	A	7215.59	REJECT	NS=2;DP=352;DPB=402.0;AC=3;AN=4;AF=0.75;RO=125;AO=277;PRO=0.0;PAO=0.0;QR=4528;QA=10147;PQR=0.0;PQA=0.0;SRF=80;SRR=45;SAF=183;SAR=94;SRP=24.2907;SAP=65.105;AB=0.586093;ABP=22.4529;RUN=1;RPP=3.20628;RPPR=3.16665;RPL=136.0;RPR=141.0;EPP=30.2987;EPPR=35.1307;DPRA=0.0;ODDS=63.2891;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98917;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.757;Dels=0.0;FS=0.467;HaplotypeScore=18.4217;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.148;QD=26.11;ReadPosRankSum=-0.138;SOR=1.2195	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:100:3674:-330.694,-27.0601,0.0:96:100:96:0,93:3610,278,0:1:.:1:.:.:.:0.000150648	0/1:129.501:302:125:4528:177:6473:-500.937,0.0,-325.625:177:59:302:125,177:6292,0,4106:.:1:1:.:.:.:-6.50323e-05
chr5	35874575	.	C	T	1827.96	REJECT	NS=2;DP=399;DPB=452.0;AC=2;AN=4;AF=0.5;RO=358;AO=94;PRO=0.0;PAO=0.0;QR=13846;QA=3562;PQR=0.0;PQA=0.0;SRF=185;SRR=173;SAF=49;SAR=45;SRP=3.88374;SAP=3.37991;AB=0.207965;ABP=337.84;RUN=1;RPP=5.32038;RPPR=8.46931;RPL=42.0;RPR=52.0;EPP=12.2506;EPPR=16.9854;DPRA=0.0;ODDS=120.512;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.116;Dels=0.0;FS=0.3035;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3775;QD=9.505;ReadPosRankSum=1.136;SOR=0.7015;ClippingRankSum=0.374	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:52:2010:52:1916:-144.287,0.0,-152.752:52:50:104:52,52:1771,0,1814:1:.:1:.:.:.:0.000150648	0/1:129.501:347:306:11836:42:1646:-53.7731,0.0,-970.277:42:12:347:305,42:808,0,12171:.:1:1:.:.:.:-6.50323e-05
chr5	35875593	.	A	T	9119.185000000001	REJECT	NS=2;DP=383;DPB=437.0;AC=3;AN=4;AF=0.75;RO=118;AO=319;PRO=0.0;PAO=0.0;QR=4539;QA=12293;PQR=0.0;PQA=0.0;SRF=67;SRR=51;SAF=170;SAR=149;SRP=7.72129;SAP=6.01224;AB=0.644578;ABP=63.2883;RUN=1;RPP=6.01224;RPPR=4.18805;RPL=149.0;RPR=170.0;EPP=7.26475;EPPR=11.917;DPRA=0.0;ODDS=66.5142;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996865;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.096;Dels=0.0;FS=0.441;HaplotypeScore=4.9984;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.304;QD=27.41;ReadPosRankSum=-1.111;SOR=0.6815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.1385:105:0:0:105:4044:-363.996,-28.4608,0.0:105:100:105:0,105:4356,315,0:1:.:1:.:.:.:0.000150648	0/1:120.1385:331:118:4539:214:8249:-652.015,0.0,-318.348:213:64:331:117,213:8176,0,4041:.:1:1:.:.:.:-6.50323e-05
chr5	35876274	.	A	G	5334.47	REJECT	NS=2;DP=331;DPB=380.0;AC=2;AN=4;AF=0.5;RO=192;AO=188;PRO=0.0;PAO=0.0;QR=7289;QA=7254;PQR=0.0;PQA=0.0;SRF=89;SRR=103;SAF=95;SAR=93;SRP=5.22701;SAP=3.0565;AB=0.494737;ABP=3.10173;RUN=1;RPP=3.74952;RPPR=3.41745;RPL=90.0;RPR=98.0;EPP=8.60069;EPPR=3.73412;DPRA=0.0;ODDS=308.991;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8542;PAIRED=0.994681;PAIREDR=0.989583;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5855;Dels=0.0;FS=2.315;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.57;QD=17.25;ReadPosRankSum=-0.0585;SOR=0.7365;ClippingRankSum=0.825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:51:1933:46:1788:-134.651,0.0,-147.707:45:47:95:49,45:1547,0,1747:1:.:1:.:.:.:0.000150648	0/1:129.501:283:141:5356:142:5466:-415.01,0.0,-405.133:142:50:283:141,142:5267,0,5130:.:1:1:.:.:.:-6.50323e-05
chr5	36094363	.	G	A	1508.955	REJECT	NS=2;DP=246;DPB=280.0;AC=2;AN=4;AF=0.5;RO=208;AO=71;PRO=0.0;PAO=0.0;QR=7923;QA=2773;PQR=0.0;PQA=0.0;SRF=133;SRR=75;SAF=54;SAR=17;SRP=38.1297;SAP=44.88;AB=0.253571;ABP=150.701;RUN=1;RPP=22.1254;RPPR=158.396;RPL=23.0;RPR=48.0;EPP=3.7749;EPPR=3.17734;DPRA=0.0;ODDS=133.325;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.7165;Dels=0.0;FS=6.5895;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.045;QD=12.52;ReadPosRankSum=2.7805;SOR=1.4155;ClippingRankSum=-0.711	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.374:66:29:1142:37:1447:-112.416,0.0,-84.9421:37:56:66:29,37:1423,0,916:1:.:1:.:.:.:0.000150648	0/1:121.374:213:179:6781:34:1326:-61.6078,0.0,-552.334:34:16:212:178,34:862,0,6885:.:1:1:.:.:.:-6.50323e-05
chr5	36094476	.	C	T	10364.335	REJECT	NS=2;DP=276;DPB=320.0;AC=4;AN=4;AF=1.0;RO=0;AO=320;PRO=0.0;PAO=0.0;QR=0;QA=12250;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=105;SAR=215;SRP=0.0;SAP=85.1191;AB=0.0;ABP=0.0;RUN=1;RPP=36.261;RPPR=0.0;RPL=195.0;RPR=125.0;EPP=42.2054;EPPR=0.0;DPRA=0.0;ODDS=57.9759;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9875;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.1;SOR=1.6045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:84:0:0:86:3271:-294.48,-23.3035,0.0:84:100:84:0,83:3348,250,0:1:.:1:.:.:.:0.000150648	1/1:129.501:233:0:0:234:8979:-807.701,-63.3726,0.0:233:100:233:0,232:9932,686,0:.:1:1:.:.:.:-6.50323e-05
chr5	37051861	.	A	AT	267.29	REJECT	NS=2;DP=269;DPB=328.8;AC=2;AN=2;AF=0.0;RO=217;AO=10;PRO=57.5;PAO=39.5;QR=8156;QA=365;PQR=2060.67;PQA=1367.67;SRF=189;SRR=28;SAF=9;SAR=1;SRP=262.396;SAP=16.9077;AB=0.0371747;ABP=503.506;RUN=1;RPP=16.9077;RPPR=19.8317;RPL=1.0;RPR=9.0;EPP=10.8276;EPPR=3.02031;DPRA=0.0;ODDS=30.4534;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:67:50:1851:4:158:-19.0078,-21.0543,-192.331:4:6:64:.:.:1:.:.:.:0.000150648	./1:128.26:202:167:6305:6:207:-16.5108,-48.0147,-606.595:6:3:195:.:.:1:.:.:.:-6.50323e-05
chr5	37051861	.	AT	A	267.29	REJECT	NS=2;DP=269;DPB=328.8;AC=2;AN=4;AF=0.5;RO=217;AO=32;PRO=57.5;PAO=39.0;QR=8156;QA=1159;PQR=2060.67;PQA=1347.67;SRF=189;SRR=28;SAF=27;SAR=5;SRP=262.396;SAP=35.8538;AB=0.118959;ABP=342.252;RUN=1;RPP=3.28173;RPPR=19.8317;RPL=15.0;RPR=17.0;EPP=7.35324;EPPR=3.02031;DPRA=0.0;ODDS=30.4534;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.3125;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.688;FS=7.829;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.376;QD=0.78;ReadPosRankSum=-0.241;SOR=0.095;ClippingRankSum=-0.929	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.001:69:50:1851:10:389:-19.0078,0.0,-182.337:10:15:68:61,11:96,0,1456:1:.:1:.:.:.:0.000150648	0/1:128.26:202:167:6305:22:770:-16.5108,0.0,-572.883:22:11:195:.:.:.:.:1:.:.:.:-6.50323e-05
chr5	38510481	.	AC	A	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:10,0:10:0.3,0.0:60.0,0.0:36.5217,0.0:0.0,0.0:0,0:0,0:10,0,0,0:0:0:10:.:.:.:.:0:.:0.000150648	0/1:15,8:23:0.0,0.0:60.0,61.25:37.0405,36.0921:0.0,0.0:90,2:10,2:15,0,8,0:8:35:23:.:.:.:.:1:.:-6.50323e-05
chr5	38950776	.	G	A	12239.4	REJECT	NS=2;DP=321;DPB=372.0;AC=4;AN=4;AF=1.0;RO=0;AO=372;PRO=0.0;PAO=0.0;QR=0;QA=14302;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=161;SAR=211;SRP=0.0;SAP=17.6035;AB=0.0;ABP=0.0;RUN=1;RPP=4.50465;RPPR=0.0;RPL=194.0;RPR=178.0;EPP=38.5244;EPPR=0.0;DPRA=0.0;ODDS=65.4797;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9839;MQMR=0.0;PAIRED=0.986559;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=59.99;QD=26.49;SOR=0.9445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.874:96:0:0:98:3730:-335.763,-26.5624,0.0:96:100:96:0,95:3874,286,0:1:.:1:.:.:.:0.000150648	1/1:123.874:272:0:0:274:10572:-950.865,-74.1795,0.0:272:100:272:0,271:11734,804,0:.:1:1:.:.:.:-6.50323e-05
chr5	38953665	.	G	GA	4971.45	REJECT	NS=2;DP=221;DPB=266.438;AC=4;AN=4;AF=1.0;RO=10;AO=199;PRO=15.6667;PAO=23.1667;QR=379;QA=6634;PQR=558.333;PQA=816.333;SRF=2;SRR=8;SAF=35;SAR=164;SRP=10.8276;SAP=184.596;AB=0.0;ABP=0.0;RUN=1;RPP=51.9939;RPPR=3.0103;RPL=133.0;RPR=66.0;EPP=3.02121;EPPR=3.0103;DPRA=0.0;ODDS=29.0378;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994975;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.374;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.025;MQRankSum=-0.731;QD=21.285;RPA=9,10;RU=A;ReadPosRankSum=0.387;SOR=1.9505;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:112.2295:53:0:0:53:1685:-154.995,-14.514,0.0:52:98:53:0,52:1485,156,0:1:.:1:.:.:.:0.000150648	1/1:116.337:194:10:379:146:4949:-436.054,-10.1309,0.0:157:90:174:11,169:4327,210,0:.:1:1:.:.:.:-6.50323e-05
chr5	38953665	.	G	GAA	5653.17	REJECT	NS=2;DP=228;DPB=266.438;AC=0;AN=4;AF=0.0;RO=10;AO=14;PRO=15.6667;PAO=17.1667;QR=379;QA=428;PQR=558.333;PQA=617.333;SRF=2;SRR=8;SAF=1;SAR=13;SRP=10.8276;SAP=25.3454;AB=0.0;ABP=0.0;RUN=1;RPP=12.937;RPPR=3.0103;RPL=11.0;RPR=3.0;EPP=8.59409;EPPR=3.0103;DPRA=0.0;ODDS=29.0378;GTI=0;TYPE=ins;CIGAR=1M2I15M;NUMALT=2;MEANALT=4.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.928571;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:125.459:55:0:0:2:68:-154.995,-149.411,-148.869:2:4:55:.:.:.:.:.:.:0.000150648	0/0:133.674:173:10:379:12:360:-436.054,-399.992,-427.357:12:7:168:.:.:.:.:.:.:-6.50323e-05
chr5	38955796	.	G	A	8571.86	REJECT	NS=2;DP=323;DPB=369.0;AC=2;AN=4;AF=0.5;RO=85;AO=284;PRO=0.0;PAO=0.0;QR=3233;QA=10826;PQR=0.0;PQA=0.0;SRF=33;SRR=52;SAF=94;SAR=190;SRP=12.2327;SAP=73.4761;AB=0.769648;ABP=236.052;RUN=1;RPP=9.00479;RPPR=18.977;RPL=156.0;RPR=128.0;EPP=30.536;EPPR=3.03585;DPRA=0.0;ODDS=167.067;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992958;PAIREDR=0.976471;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7015;Dels=0.0;FS=2.8125;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2275;QD=25.605;ReadPosRankSum=-0.324;SOR=1.02;ClippingRankSum=-0.661	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:41:1551:48:1789:-136.945,0.0,-115.522:48:54:88:39,48:1616,0,1364:1:.:1:.:.:.:0.000150648	0/1:129.501:279:44:1682:236:9037:-737.04,0.0,-75.4622:235:84:279:44,234:9192,0,1046:.:1:1:.:.:.:-6.50323e-05
chr5	38958750	.	A	G	1664.425	REJECT	NS=2;DP=266;DPB=310.0;AC=2;AN=4;AF=0.5;RO=231;AO=79;PRO=0.0;PAO=0.0;QR=8931;QA=3035;PQR=0.0;PQA=0.0;SRF=146;SRR=85;SAF=49;SAR=30;SRP=37.9889;SAP=12.9331;AB=0.254839;ABP=164.848;RUN=1;RPP=10.954;RPPR=23.7756;RPL=31.0;RPR=48.0;EPP=5.23675;EPPR=3.24531;DPRA=0.0;ODDS=133.878;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4405;Dels=0.0;FS=4.115;HaplotypeScore=1.9654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5995;QD=10.735;ReadPosRankSum=0.546;SOR=0.6455;ClippingRankSum=1.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:43:1646:44:1689:-128.478,0.0,-124.604:43:50:86:43,42:1540,0,1465:1:.:1:.:.:.:0.000150648	0/1:129.501:223:188:7285:35:1346:-60.6757,0.0,-594.92:35:16:223:188,35:848,0,7475:.:1:1:.:.:.:-6.50323e-05
chr5	38978758	.	TA	T	3135.3	REJECT	NS=2;DP=232;DPB=291.0;AC=2;AN=4;AF=0.5;RO=108;AO=103;PRO=57.0;PAO=68.0;QR=3986;QA=3824;PQR=2068.0;PQA=2478.0;SRF=17;SRR=91;SAF=8;SAR=95;SRP=113.112;SAP=162.582;AB=0.443966;ABP=9.33752;RUN=1;RPP=5.56125;RPPR=16.6021;RPL=57.0;RPR=46.0;EPP=3.53736;EPPR=4.2971;DPRA=0.0;ODDS=191.557;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=1;MEANALT=7.0;LEN=1;MQM=60.1942;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0165;FS=2.9605;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.0705;QD=9.45;RPA=11,10;RU=A;ReadPosRankSum=-0.9855;SOR=1.1735;STR;ClippingRankSum=-0.635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7985:67:29:1043:25:892:-86.9321,0.0,-91.9406:31:48:63:35,37:757,0,715:1:.:1:.:.:.:0.000150648	0/1:119.7985:216:79:2943:78:2932:-307.002,0.0,-279.834:96:50:190:109,114:2613,0,2230:.:1:1:.:.:.:-6.50323e-05
chr5	39074296	.	G	C	1549.58	REJECT	NS=1;DP=118;DPB=118.0;AC=1;AN=4;AF=0.5;RO=62;AO=56;PRO=0.0;PAO=0.0;QR=2247;QA=2152;PQR=0.0;PQA=0.0;SRF=39;SRR=23;SAF=38;SAR=18;SRP=11.9764;SAP=18.5208;AB=0.474576;ABP=3.67278;RUN=1;RPP=5.49198;RPPR=11.9764;RPL=24.0;RPR=32.0;EPP=3.63072;EPPR=6.51267;DPRA=0.0;ODDS=356.804;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.98;FS=1.553;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.467;QD=16.6;ReadPosRankSum=1.778;SOR=0.892;ClippingRankSum=0.019	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:117:62:2247:56:2152:-161.742,0.0,-170.275:55:47:117:62,55:1971,0,2151:1:.:1:.:.:.:0.000150648	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-6.50323e-05
chr5	43509462	.	T	TC	11835.0	REJECT	NS=2;DP=326;DPB=499.333;AC=4;AN=4;AF=1.0;RO=0;AO=361;PRO=11.5;PAO=15.5;QR=0;QA=13233;PQR=381.5;PQA=523.5;SRF=0;SRR=0;SAF=111;SAR=250;SRP=0.0;SAP=119.229;AB=0.0;ABP=0.0;RUN=1;RPP=35.0651;RPPR=0.0;RPL=217.0;RPR=144.0;EPP=8.06905;EPPR=0.0;DPRA=0.0;ODDS=60.4168;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0277;MQMR=0.0;PAIRED=0.99723;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=43509462;HOMLEN=1;HOMSEQ=C;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.165;QD=30.9;RPA=1,2;RU=C;SOR=1.7235;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:89:3287:-298.319,-24.3636,0.0:89:100:91:13,83:3433,277,0:1:.:1:1:.:.:0.000150648	1/1:129.501:282:0:0:272:9946:-904.931,-74.3421,0.0:273:100:288:52,280:12195,867,0:.:1:1:1:.:.:-6.50323e-05
chr5	44305309	.	C	G	1911.3	PASS	SOMATIC;NS=2;DP=260;DPB=260.0;AC=1;AN=3;AF=0.25;RO=187;AO=73;PRO=0.0;PAO=0.0;QR=7163;QA=2803;PQR=0.0;PQA=0.0;SRF=50;SRR=137;SAF=26;SAR=47;SRP=90.9027;SAP=16.1284;AB=0.398907;ABP=19.2548;RUN=1;RPP=48.2543;RPPR=116.821;RPL=56.0;RPR=17.0;EPP=8.03741;EPPR=5.62303;DPRA=2.37662;ODDS=49.049;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986301;PAIREDR=0.994652;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.59;Dels=0.0;FS=4.846;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.086;QD=14.04;ReadPosRankSum=0.601;SOR=0.413	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:76:77:2947:0:0:0.0,-20.8757,-265.356:0:0:76:75,0:.:0.0:0:.:.:.:0:.:.:0:0.000150648	0/1:129.501:181:110:4216:73:2803:-202.605,0.0,-329.719:72:40:181:107,70:38.0:0.391:2:2569,0,4133:.:1:1:.:.:1:-6.50323e-05
chr5	49570855	.	A	G	14074.8	REJECT	NS=2;DP=373;DPB=426.0;AC=4;AN=4;AF=1.0;RO=0;AO=426;PRO=0.0;PAO=0.0;QR=0;QA=16162;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=213;SAR=213;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=10.3709;RPPR=0.0;RPL=232.0;RPR=194.0;EPP=23.8891;EPPR=0.0;DPRA=0.0;ODDS=69.7703;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995305;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8967;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.28;SOR=0.97	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:105:3915:-352.369,-28.4258,0.0:105:100:105:0,105:4209,314,0:1:.:1:.:.:.:3.05536e-05	1/1:129.501:320:0:0:321:12247:-1101.58,-86.9475,0.0:320:100:320:0,320:13709,957,0:.:1:1:.:.:.:-0.000102266
chr5	52512796	.	C	CT	779.466	REJECT	NS=2;DP=254;DPB=304.9;AC=2;AN=3;AF=0.25;RO=135;AO=44;PRO=41.3333;PAO=35.3333;QR=4998;QA=1445;PQR=1424.0;PQA=1220.0;SRF=98;SRR=37;SAF=29;SAR=15;SRP=62.8625;SAP=12.6832;AB=0.173228;ABP=238.589;RUN=1;RPP=3.20771;RPPR=20.5268;RPL=21.0;RPR=23.0;EPP=15.6443;EPPR=5.72866;DPRA=0.0;ODDS=2.08008;GTI=1;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.193;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.153;QD=2.68;RPA=13,14;RU=T;ReadPosRankSum=0.562;SOR=0.54;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.506859:59:43:1591:4:139:-3.28068,-0.627544,-130.915:4:8:52:.:.:.:.:1:.:.:.:3.05536e-05	0/1:129.501:214:92:3407:40:1306:-82.55,0.0,-293.204:49:27:178:144,59:662,0,2518:.:1:1:.:.:.:-0.000102266
chr5	52512796	.	CT	C	779.466	REJECT	NS=2;DP=254;DPB=304.9;AC=2;AN=3;AF=0.25;RO=135;AO=26;PRO=41.3333;PAO=31.3333;QR=4998;QA=888;PQR=1424.0;PQA=1068.0;SRF=98;SRR=37;SAF=19;SAR=7;SRP=62.8625;SAP=15.0369;AB=0.102362;ABP=351.848;RUN=1;RPP=15.0369;RPPR=20.5268;RPL=7.0;RPR=19.0;EPP=3.34437;EPPR=5.72866;DPRA=0.0;ODDS=2.08008;GTI=1;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.3846;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.506859:59:43:1591:5:187:-3.28068,0.0,-136.768:5:10:52:.:.:1:.:.:.:3.05536e-05	./1:160.002:195:92:3407:21:701:-82.55,-52.0919,-382.405:21:14:153:.:.:1:.:.:.:-0.000102266
chr5	56152416	.	C	A	3655.05	REJECT	NS=2;DP=270;DPB=312.0;AC=2;AN=4;AF=0.5;RO=174;AO=138;PRO=0.0;PAO=0.0;QR=6536;QA=5197;PQR=0.0;PQA=0.0;SRF=129;SRR=45;SAF=106;SAR=32;SRP=91.0673;SAP=89.1768;AB=0.442308;ABP=12.0303;RUN=1;RPP=30.7674;RPPR=57.372;RPL=48.0;RPR=90.0;EPP=3.07324;EPPR=4.80738;DPRA=0.0;ODDS=196.655;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.927;Dels=0.0;FS=3.2565;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.029;QD=15.085;ReadPosRankSum=1.248;SOR=1.1465;ClippingRankSum=0.454	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:50:1818:33:1253:-90.3485,0.0,-141.191:32:40:81:47,32:1142,0,1688:1:.:1:.:.:.:-0.000248759	0/1:129.501:229:124:4718:105:3944:-292.782,0.0,-362.418:105:46:229:124,105:3708,0,4594:.:1:1:.:.:.:-0.00038808
chr5	56161787	.	G	A	6765.125	REJECT	NS=2;DP=300;DPB=345.0;AC=3;AN=4;AF=0.75;RO=102;AO=243;PRO=0.0;PAO=0.0;QR=3951;QA=9404;PQR=0.0;PQA=0.0;SRF=28;SRR=74;SAF=75;SAR=168;SRP=48.0577;SAP=80.2986;AB=0.6;ABP=25.1593;RUN=1;RPP=9.52472;RPPR=5.13919;RPL=135.0;RPR=108.0;EPP=6.23623;EPPR=3.7767;DPRA=0.0;ODDS=57.1368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995885;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.717;Dels=0.0;FS=1.561;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.51;QD=26.825;ReadPosRankSum=-0.056;SOR=1.2185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:90:3435:-309.229,-24.3882,0.0:89:100:89:0,88:3578,265,0:1:.:1:.:.:.:-0.000248759	0/1:129.501:255:102:3951:153:5969:-467.835,0.0,-286.301:153:60:255:102,153:5934,0,3653:.:1:1:.:.:.:-0.00038808
chr5	56177443	.	G	A	5212.75	REJECT	NS=2;DP=344;DPB=395.0;AC=2;AN=4;AF=0.5;RO=204;AO=190;PRO=0.0;PAO=0.0;QR=7586;QA=7243;PQR=0.0;PQA=0.0;SRF=118;SRR=86;SAF=118;SAR=72;SRP=13.9102;SAP=27.1936;AB=0.481013;ABP=4.24721;RUN=1;RPP=4.65605;RPPR=10.206;RPL=89.0;RPR=101.0;EPP=3.74174;EPPR=12.5903;DPRA=0.0;ODDS=303.294;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994737;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5145;Dels=0.0;FS=3.672;HaplotypeScore=2.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4375;QD=17.245;ReadPosRankSum=0.4535;SOR=1.0835;ClippingRankSum=0.338	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5655:99:48:1777:51:1916:-145.64,0.0,-133.162:50:51:98:48,50:1755,0,1650:1:.:1:.:.:.:-0.000248759	0/1:118.5655:294:156:5809:139:5327:-399.314,0.0,-442.635:138:47:294:156,138:5091,0,5529:.:1:1:.:.:.:-0.00038808
chr5	56177743	.	G	A	8647.525000000001	REJECT	NS=2;DP=387;DPB=443.0;AC=3;AN=4;AF=0.75;RO=131;AO=311;PRO=0.0;PAO=0.0;QR=5005;QA=11877;PQR=0.0;PQA=0.0;SRF=59;SRR=72;SAF=137;SAR=174;SRP=5.81167;SAP=12.569;AB=0.605422;ABP=35.0591;RUN=1;RPP=8.88235;RPPR=4.35297;RPL=170.0;RPR=141.0;EPP=4.1903;EPPR=3.02688;DPRA=0.0;ODDS=69.5873;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996785;PAIREDR=0.992366;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.641;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.111;QD=28.88;ReadPosRankSum=0.934;SOR=0.8495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.0805:107:0:0:110:4177:-375.941,-29.7954,0.0:107:100:107:0,104:4216,312,0:1:.:1:.:.:.:-0.000248759	0/1:121.0805:332:131:5005:201:7700:-602.655,0.0,-360.261:201:61:332:131,201:7613,0,4604:.:1:1:.:.:.:-0.00038808
chr5	56177848	.	TCAA	T	5595.3	REJECT	NS=2;DP=275;DPB=362.214;AC=3;AN=4;AF=0.75;RO=69;AO=191;PRO=89.8333;PAO=84.8333;QR=2591;QA=6859;PQR=3256.33;PQA=3070.33;SRF=33;SRR=36;SAF=91;SAR=100;SRP=3.29354;SAP=3.93119;AB=0.594872;ABP=18.2551;RUN=1;RPP=6.29593;RPPR=3.29354;RPL=104.0;RPR=87.0;EPP=3.93119;EPPR=3.29354;DPRA=0.0;ODDS=33.214;GTI=0;TYPE=del;CIGAR=1M3D24M;NUMALT=2;MEANALT=4.5;LEN=3;MQM=60.3141;MQMR=60.0;PAIRED=0.989529;PAIREDR=0.971014;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.668;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=60.19;MQRankSum=0.061;QD=24.165;RPA=8,7;RU=CAA;ReadPosRankSum=1.077;SOR=0.84;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:113.569:80:0:0:75:2612:-235.052,-20.2744,0.0:77:96:80:1,79:3516,235,0:1:.:1:.:.:.:-0.000248759	0/1:116.7135:237:69:2591:116:4247:-330.58,0.0,-198.391:120:62:193:71,125:5694,0,3063:.:1:1:.:.:.:-0.00038808
chr5	56177848	.	TCAACAA	T	5595.3	REJECT	SOMATIC;NS=2;DP=275;DPB=362.214;AC=1;AN=3;AF=0.0;RO=69;AO=10;PRO=89.8333;PAO=64.3333;QR=2591;QA=330;PQR=3256.33;PQA=2308.33;SRF=33;SRR=36;SAF=4;SAR=6;SRP=3.29354;SAP=3.87889;AB=0.025641;ABP=384.132;RUN=1;RPP=3.0103;RPPR=3.29354;RPL=5.0;RPR=5.0;EPP=3.0103;EPPR=3.29354;DPRA=0.0;ODDS=33.214;GTI=0;TYPE=del;CIGAR=1M6D21M;NUMALT=2;MEANALT=4.5;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.971014;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:128.138:80:0:0:5:159:-235.052,-228.059,-293.48:5:6:80:.:.:.:.:.:.:-0.000248759	./1:134.427:195:69:2591:5:171:-330.58,-352.856,-766.534:5:3:190:.:.:1:.:.:.:-0.00038808
chr5	56178217	.	A	C	7835.09	REJECT	NS=2;DP=379;DPB=429.0;AC=3;AN=4;AF=0.75;RO=143;AO=286;PRO=0.0;PAO=0.0;QR=5514;QA=10781;PQR=0.0;PQA=0.0;SRF=70;SRR=73;SAF=144;SAR=142;SRP=3.14697;SAP=3.04067;AB=0.569277;ABP=16.8502;RUN=1;RPP=11.7873;RPPR=3.02549;RPL=160.0;RPR=126.0;EPP=9.8436;EPPR=3.38993;DPRA=0.0;ODDS=61.4746;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98951;PAIREDR=0.993007;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.113;Dels=0.0;FS=1.187;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.784;QD=25.68;ReadPosRankSum=0.271;SOR=0.814	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.7885:96:0:0:97:3628:-326.581,-26.2721,0.0:96:100:96:0,95:3830,285,0:1:.:1:.:.:.:-0.000248759	0/1:119.7885:331:143:5514:189:7153:-553.476,0.0,-406.042:188:57:331:142,188:6972,0,5134:.:1:1:.:.:.:-0.00038808
chr5	56179341	.	G	A	1158.4	REJECT	NS=2;DP=238;DPB=271.0;AC=2;AN=4;AF=0.5;RO=212;AO=59;PRO=0.0;PAO=0.0;QR=8175;QA=2235;PQR=0.0;PQA=0.0;SRF=155;SRR=57;SAF=47;SAR=12;SRP=101.382;SAP=48.096;AB=0.217712;ABP=190.582;RUN=1;RPP=19.2411;RPPR=56.1089;RPL=19.0;RPR=40.0;EPP=5.99147;EPPR=3.37904;DPRA=0.0;ODDS=43.5471;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983051;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.325;Dels=0.0;FS=9.7565;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2335;QD=10.455;ReadPosRankSum=1.245;SOR=1.828;ClippingRankSum=0.365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:64:29:1125:37:1382:-106.564,0.0,-83.4405:35:55:64:29,34:1249,0,1036:1:.:1:.:.:.:-0.000248759	0/1:129.501:205:183:7050:22:853:-21.1837,0.0,-578.707:22:11:205:183,22:341,0,7306:.:1:1:.:.:.:-0.00038808
chr5	56180480	.	A	G	679.4555	REJECT	NS=2;DP=231;DPB=260.0;AC=2;AN=4;AF=0.5;RO=217;AO=43;PRO=0.0;PAO=0.0;QR=8314;QA=1645;PQR=0.0;PQA=0.0;SRF=163;SRR=54;SAF=32;SAR=11;SRP=121.901;SAP=25.2805;AB=0.165385;ABP=255.87;RUN=1;RPP=25.2805;RPPR=37.8439;RPL=11.0;RPR=32.0;EPP=3.46479;EPPR=3.50063;DPRA=0.0;ODDS=36.347;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976744;PAIREDR=0.995392;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6905;Dels=0.0;FS=0.0;HaplotypeScore=4.8568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.621;QD=6.87;ReadPosRankSum=0.348;SOR=0.665;ClippingRankSum=-0.636	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:35:1337:21:814:-58.1473,0.0,-105.258:20:37:55:34,20:707,0,1242:1:.:1:.:.:.:-0.000248759	0/1:117.6335:203:182:6977:22:831:-19.4985,0.0,-572.41:22:11:203:181,22:313,0,7157:.:1:1:.:.:.:-0.00038808
chr5	58500382	.	T	C	5513.56	REJECT	NS=2;DP=320;DPB=360.0;AC=2;AN=4;AF=0.5;RO=168;AO=192;PRO=0.0;PAO=0.0;QR=6427;QA=7314;PQR=0.0;PQA=0.0;SRF=101;SRR=67;SAF=116;SAR=76;SRP=17.9521;SAP=21.1059;AB=0.533333;ABP=6.48466;RUN=1;RPP=11.8771;RPPR=7.19814;RPL=82.0;RPR=110.0;EPP=7.5342;EPPR=3.0103;DPRA=0.0;ODDS=218.659;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9702;PAIRED=1.0;PAIREDR=0.994048;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.142;Dels=0.0;FS=1.4745;HaplotypeScore=10.7894;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.4225;QD=19.795;ReadPosRankSum=0.555;SOR=0.8045;ClippingRankSum=-0.147	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:35:1299:43:1606:-123.472,0.0,-95.8454:43:56:77:33,43:1558,0,1127:1:.:1:.:.:.:-0.000248759	0/1:129.501:281:133:5128:149:5708:-437.056,0.0,-384.877:149:53:281:132,149:5569,0,4825:.:1:1:.:.:.:-0.00038808
chr5	58500417	.	G	A	1018.49	REJECT	NS=2;DP=346;DPB=394.0;AC=2;AN=4;AF=0.5;RO=328;AO=66;PRO=0.0;PAO=0.0;QR=12493;QA=2385;PQR=0.0;PQA=0.0;SRF=175;SRR=153;SAF=36;SAR=30;SRP=6.21455;SAP=4.19474;AB=0.167513;ABP=381.331;RUN=1;RPP=9.45891;RPPR=11.5903;RPL=26.0;RPR=40.0;EPP=3.1419;EPPR=7.48565;DPRA=0.0;ODDS=9.39473;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9242;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993902;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0445;Dels=0.0;FS=1.3385;HaplotypeScore=6.8563;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4115;QD=6.955;ReadPosRankSum=0.065;SOR=0.8265;ClippingRankSum=-0.245	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2425:92:54:2063:40:1426:-102.906,0.0,-160.273:39:42:92:53,38:1266,0,1866:1:.:1:.:.:.:-0.000248759	0/1:69.9006:299:274:10430:26:959:-5.04266,0.0,-856.917:26:9:299:273,26:166,0,10735:.:1:1:.:.:.:-0.00038808
chr5	66003113	.	G	C	1454.6100000000001	REJECT	NS=2;DP=317;DPB=361.0;AC=2;AN=4;AF=0.5;RO=286;AO=75;PRO=0.0;PAO=0.0;QR=11016;QA=2877;PQR=0.0;PQA=0.0;SRF=132;SRR=154;SAF=33;SAR=42;SRP=6.6851;SAP=5.35549;AB=0.207756;ABP=270.811;RUN=1;RPP=21.1059;RPPR=3.28363;RPL=50.0;RPR=25.0;EPP=7.90335;EPPR=11.7873;DPRA=0.0;ODDS=101.936;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996503;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3045;Dels=0.0;FS=2.8035;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5295;QD=9.47;ReadPosRankSum=0.7285;SOR=0.984;ClippingRankSum=-1.209	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.833:85:47:1800:40:1537:-114.785,0.0,-138.471:39:46:85:44,39:1406,0,1652:1:.:1:.:.:.:-0.000248759	0/1:120.833:274:239:9216:35:1340:-46.3087,0.0,-754.751:35:13:274:239,35:670,0,9499:.:1:1:.:.:.:-0.00038808
chr5	67522722	.	C	T	2477.825	REJECT	NS=2;DP=380;DPB=439.0;AC=2;AN=4;AF=0.5;RO=321;AO=118;PRO=0.0;PAO=0.0;QR=12195;QA=4375;PQR=0.0;PQA=0.0;SRF=143;SRR=178;SAF=52;SAR=66;SRP=11.2971;SAP=6.61715;AB=0.268793;ABP=206.847;RUN=1;RPP=3.30474;RPPR=4.15354;RPL=61.0;RPR=57.0;EPP=3.0103;EPPR=4.53236;DPRA=0.0;ODDS=197.975;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8692;PAIRED=1.0;PAIREDR=0.996885;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.253;Dels=0.0;FS=2.533;HaplotypeScore=9.7958;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3675;QD=11.52;ReadPosRankSum=0.752;SOR=0.8075;ClippingRankSum=0.625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.232:118:52:1952:66:2448:-188.38,0.0,-143.541:66:56:118:51,67:2297,0,1691:1:.:1:.:.:.:-0.000248759	0/1:118.232:321:269:10243:52:1927:-86.4019,0.0,-834.416:52:16:321:269,52:1251,0,10492:.:1:1:.:.:.:-0.00038808
chr5	67522851	.	A	C	1658.365	REJECT	NS=2;DP=200;DPB=239.0;AC=2;AN=4;AF=0.5;RO=168;AO=71;PRO=0.0;PAO=0.0;QR=6288;QA=2768;PQR=0.0;PQA=0.0;SRF=33;SRR=135;SAF=16;SAR=55;SRP=137.486;SAP=49.5287;AB=0.297071;ABP=88.4973;RUN=1;RPP=22.1254;RPPR=77.6676;RPL=48.0;RPR=23.0;EPP=3.28556;EPPR=14.6432;DPRA=0.0;ODDS=104.54;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.982143;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.156;Dels=0.0;FS=1.3595;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8805;QD=12.59;ReadPosRankSum=0.204;SOR=1.1105;ClippingRankSum=0.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1035:76:32:1181:44:1721:-134.372,0.0,-85.7362:44:58:76:32,44:1622,0,1013:1:.:1:.:.:.:-0.000248759	0/1:119.1035:162:136:5107:27:1047:-50.0949,0.0,-415.338:27:17:162:135,27:711,0,5100:.:1:1:.:.:.:-0.00038808
chr5	67569746	.	G	A	5569.52	REJECT	NS=2;DP=329;DPB=371.0;AC=2;AN=4;AF=0.5;RO=177;AO=194;PRO=0.0;PAO=0.0;QR=6803;QA=7414;PQR=0.0;PQA=0.0;SRF=104;SRR=73;SAF=118;SAR=76;SRP=14.8;SAP=22.755;AB=0.522911;ABP=4.70182;RUN=1;RPP=7.48756;RPPR=13.3279;RPL=87.0;RPR=107.0;EPP=3.18939;EPPR=6.55581;DPRA=0.0;ODDS=257.106;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.99435;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.425;Dels=0.0;FS=0.944;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.122;QD=18.535;ReadPosRankSum=0.06;SOR=0.86;ClippingRankSum=1.127	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.268:82:40:1503:43:1630:-124.263,0.0,-112.838:42:51:82:40,42:1485,0,1387:1:.:1:.:.:.:-0.000248759	0/1:117.268:288:137:5300:151:5784:-442.236,0.0,-398.72:151:52:288:137,151:5587,0,5078:.:1:1:.:.:.:-0.00038808
chr5	79950508	.	C	T	3682.77	PASS	DP=84;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.83;SOR=1.911	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,83:83:99.0:3711,253,0:83:100:83:1:.:.:.:.:.:-0.000248759	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-27.9349
chr5	79950508	.	CGCCA	TGCCG	2611.25	REJECT	NS=1;DP=75;DPB=81.8;AC=2;AN=4;AF=1.0;RO=0;AO=75;PRO=0.0;PAO=11.0;QR=0;QA=2615;PQR=0.0;PQA=345.0;SRF=0;SRR=0;SAF=26;SAR=49;SRP=0.0;SAP=18.3264;AB=0.0;ABP=0.0;RUN=1;RPP=3.73412;RPPR=0.0;RPL=40.0;RPR=35.0;EPP=5.35549;EPPR=0.0;DPRA=0.0;ODDS=57.1821;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=1.0;LEN=5;MQM=60.0;MQMR=0.0;PAIRED=0.986667;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:154.469:75:0:0:75:2615:-266.074,-22.8339,0.0:75:100:75:.:.:1:.:.:.:-0.000248759	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-27.9349
chr5	79950512	.	A	G	3570.77	PASS	DP=74;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.99;SOR=1.641	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,74:74:99.0:3599,244,0:74:100:74:1:.:.:.:.:.:-0.000248759	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-27.9349
chr5	79950781	.	A	G	854.871	REJECT	NS=1;DP=63;DPB=63.0;AC=1;AN=4;AF=0.5;RO=31;AO=32;PRO=0.0;PAO=0.0;QR=1181;QA=1233;PQR=0.0;PQA=0.0;SRF=6;SRR=25;SAF=5;SAR=27;SRP=28.2974;SAP=35.8538;AB=0.507937;ABP=3.04477;RUN=1;RPP=7.35324;RPPR=11.486;RPL=20.0;RPR=12.0;EPP=3.28173;EPPR=6.44263;DPRA=0.0;ODDS=186.398;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.967742;technology.ILLUMINA=1.0;BaseQRankSum=-0.036;FS=1.255;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.945;QD=17.85;ReadPosRankSum=-1.753;SOR=0.951;ClippingRankSum=-0.498	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.1775:62:31:1181:32:1233:-93.9757,0.0,-89.284:31:51:62:30,31:1117,0,1086:1:.:1:.:.:.:-0.000248759	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-27.9349
chr5	80149981	.	A	G	13052.3	REJECT	NS=2;DP=348;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=401;PRO=0.0;PAO=0.0;QR=0;QA=15201;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=157;SRP=0.0;SAP=43.9975;AB=0.0;ABP=0.0;RUN=1;RPP=4.22871;RPPR=0.0;RPL=193.0;RPR=208.0;EPP=8.21425;EPPR=0.0;DPRA=0.0;ODDS=69.7776;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992519;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.195;SOR=1.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:105:3964:-356.774,-28.4289,0.0:104:100:104:0,104:4157,312,0:1:.:1:.:.:.:-0.000248759	1/1:129.501:295:0:0:296:11237:-1010.76,-80.1587,0.0:295:100:295:0,295:12547,879,0:.:1:1:.:.:.:-0.0141286
chr5	80168937	.	G	A	13285.95	REJECT	NS=2;DP=357;DPB=408.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=0.0;PAO=0.0;QR=0;QA=15369;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=240;SAR=167;SRP=0.0;SAP=31.4422;AB=0.0;ABP=0.0;RUN=1;RPP=4.21075;RPPR=0.0;RPL=196.0;RPR=211.0;EPP=5.83268;EPPR=0.0;DPRA=0.0;ODDS=67.3085;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8293;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.905;SOR=1.05	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.6415:100:0:0:101:3815:-343.389,-27.3567,0.0:100:100:100:0,99:4030,296,0:1:.:1:.:.:.:-0.000248759	1/1:126.6415:307:0:0:306:11554:-1039.18,-82.8106,0.0:306:100:306:0,306:12849,894,0:.:1:1:.:.:.:-0.0141286
chr5	86629061	.	C	CT	250.642	REJECT	NS=2;DP=240;DPB=308.95;AC=2;AN=2;AF=0.0;RO=168;AO=20;PRO=54.6667;PAO=41.6667;QR=6259;QA=712;PQR=1903.33;PQA=1429.33;SRF=118;SRR=50;SAF=15;SAR=5;SRP=62.7775;SAP=13.8677;AB=0.0833333;ABP=364.922;RUN=1;RPP=4.74748;RPPR=59.3135;RPL=8.0;RPR=12.0;EPP=6.91895;EPPR=3.47562;DPRA=0.0;ODDS=19.5849;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.95;PAIREDR=0.994048;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:85.052:66:46:1691:6:225:-12.7165,-7.37043,-154.27:6:10:61:.:.:1:.:.:.:-0.000248759	./1:130.176:174:122:4568:14:487:-19.9744,-15.7217,-420.302:14:9:154:.:.:1:.:.:.:-0.0141286
chr5	86629061	.	CT	C	250.642	REJECT	NS=2;DP=240;DPB=308.95;AC=2;AN=4;AF=0.5;RO=168;AO=27;PRO=54.6667;PAO=37.6667;QR=6259;QA=1017;PQR=1903.33;PQA=1285.33;SRF=118;SRR=50;SAF=21;SAR=6;SRP=62.7775;SAP=21.1059;AB=0.1125;ABP=316.028;RUN=1;RPP=12.7417;RPPR=59.3135;RPL=8.0;RPR=19.0;EPP=3.73412;EPPR=3.47562;DPRA=0.0;ODDS=19.5849;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994048;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:85.052:66:46:1691:9:340:-12.7165,0.0,-169.67:9:15:61:.:.:1:.:.:.:-0.000248759	0/1:130.176:174:122:4568:18:677:-19.9744,0.0,-439.008:18:12:154:.:.:1:.:.:.:-0.0141286
chr5	88416354	.	C	T	5898.59	REJECT	NS=2;DP=363;DPB=410.0;AC=2;AN=4;AF=0.5;RO=200;AO=210;PRO=0.0;PAO=0.0;QR=7502;QA=7885;PQR=0.0;PQA=0.0;SRF=87;SRR=113;SAF=82;SAR=128;SRP=10.3499;SAP=24.8905;AB=0.512195;ABP=3.53993;RUN=1;RPP=3.38255;RPPR=5.78978;RPL=108.0;RPR=102.0;EPP=5.03701;EPPR=3.40116;DPRA=0.0;ODDS=242.894;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1429;MQMR=60.0;PAIRED=0.97619;PAIREDR=0.975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3085;Dels=0.0;FS=2.226;HaplotypeScore=7.831;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.294;QD=16.97;ReadPosRankSum=1.3375;SOR=0.7945;ClippingRankSum=0.519	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:51:1859:39:1458:-106.913,0.0,-142.979:38:43:87:48,37:1319,0,1652:1:.:1:.:.:.:-0.000248759	0/1:129.501:318:149:5643:171:6427:-491.459,0.0,-420.927:169:53:318:149,167:6064,0,5361:.:1:1:.:.:.:-0.0141286
chr5	91540296	.	G	A	4417.655000000001	REJECT	NS=2;DP=293;DPB=343.0;AC=2;AN=4;AF=0.5;RO=176;AO=165;PRO=0.0;PAO=0.0;QR=6668;QA=6325;PQR=0.0;PQA=0.0;SRF=63;SRR=113;SAF=60;SAR=105;SRP=33.8551;SAP=29.6602;AB=0.48105;ABP=4.08021;RUN=1;RPP=58.6132;RPPR=36.372;RPL=115.0;RPR=50.0;EPP=7.76122;EPPR=20.8262;DPRA=0.0;ODDS=303.171;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981818;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9265;Dels=0.0;FS=0.0;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.439;QD=17.32;ReadPosRankSum=0.5425;SOR=0.68;ClippingRankSum=-1.214	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:49:1841:46:1780:-134.495,0.0,-139.972:46:48:94:48,46:1677,0,1608:1:.:1:.:.:.:-0.000248759	0/1:129.501:245:127:4827:119:4545:-342.215,0.0,-367.589:117:48:244:127,116:4244,0,4687:.:1:1:.:.:.:-0.0141286
chr5	98216994	.	GTTC	TTTT	56.6292	REJECT	NS=2;DP=356;DPB=367.0;AC=1;AN=4;AF=0.25;RO=300;AO=27;PRO=23.0;PAO=0.0;QR=9693;QA=421;PQR=536.0;PQA=0.0;SRF=120;SRR=180;SAF=27;SAR=0;SRP=29.068;SAP=61.6401;AB=0.108696;ABP=125.368;RUN=1;RPP=9.52472;RPPR=197.69;RPL=18.0;RPR=9.0;EPP=9.52472;EPPR=14.5915;DPRA=0.0;ODDS=13.0394;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=5.5;LEN=4;MQM=57.5185;MQMR=59.2367;PAIRED=0.962963;PAIREDR=0.99;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56.6292:92:74:2252:10:162:-12.4105,0.0,-189.725:10:12:84:.:.:1:.:.:.:-0.000248759	0/0:160.002:264:226:7441:17:259:0.0,-25.0641,-659.072:17:7:243:.:.:0:.:.:.:-0.0141286
chr5	102000423	.	A	G	15334.15	REJECT	NS=2;DP=404;DPB=450.0;AC=4;AN=4;AF=1.0;RO=2;AO=447;PRO=0.0;PAO=0.0;QR=32;QA=17145;PQR=0.0;PQA=0.0;SRF=2;SRR=0;SAF=212;SAR=235;SRP=7.35324;SAP=5.58012;AB=0.0;ABP=0.0;RUN=1;RPP=6.55169;RPPR=3.0103;RPL=210.0;RPR=237.0;EPP=7.67872;EPPR=3.0103;DPRA=0.0;ODDS=59.81;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997763;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.693;Dels=0.0;FS=0.0;HaplotypeScore=6.7883;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.6;QD=36.105;ReadPosRankSum=-0.59;SOR=0.614	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.767:90:1:16:90:3406:-305.148,-23.197,0.0:89:99:89:0,88:3454,263,0:1:.:1:.:.:.:-0.000248759	1/1:123.767:358:1:16:357:13739:-1234.24,-95.5069,0.0:357:100:358:1,357:15344,1060,0:.:1:1:.:.:.:-0.0141286
chr5	103500206	.	C	T	9105.93	REJECT	NS=2;DP=243;DPB=274.0;AC=4;AN=4;AF=1.0;RO=0;AO=274;PRO=0.0;PAO=0.0;QR=0;QA=10411;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=178;SAR=96;SRP=0.0;SAP=56.2985;AB=0.0;ABP=0.0;RUN=1;RPP=67.2035;RPPR=0.0;RPL=92.0;RPR=182.0;EPP=41.8432;EPPR=0.0;DPRA=0.0;ODDS=42.4263;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989051;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.51;SOR=1.604	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:60:0:0:61:2298:-207.02,-16.5504,0.0:60:100:60:0,60:2496,181,0:1:.:1:.:.:.:-0.000248759	1/1:129.501:212:0:0:213:8113:-729.859,-57.6907,0.0:212:100:212:0,212:9069,632,0:.:1:1:.:.:.:-0.0141286
chr5	103500223	.	C	T	11927.8	REJECT	NS=2;DP=313;DPB=353.0;AC=4;AN=4;AF=1.0;RO=0;AO=353;PRO=0.0;PAO=0.0;QR=0;QA=13581;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=216;SAR=137;SRP=0.0;SAP=41.4017;AB=0.0;ABP=0.0;RUN=1;RPP=34.0199;RPPR=0.0;RPL=141.0;RPR=212.0;EPP=58.5274;EPPR=0.0;DPRA=0.0;ODDS=53.6118;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991501;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9304;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.05;SOR=1.3315	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:3004:-270.472,-21.4083,0.0:78:100:78:0,77:3165,231,0:1:.:1:.:.:.:-0.000248759	1/1:129.501:273:0:0:274:10577:-951.407,-74.2352,0.0:273:100:273:0,273:11832,819,0:.:1:1:.:.:.:-0.0141286
chr5	103500243	.	G	T	5157.03	REJECT	NS=2;DP=325;DPB=366.0;AC=2;AN=4;AF=0.5;RO=181;AO=183;PRO=0.0;PAO=0.0;QR=6861;QA=6952;PQR=0.0;PQA=0.0;SRF=85;SRR=96;SAF=101;SAR=82;SRP=4.46195;SAP=7.29391;AB=0.5;ABP=3.0103;RUN=1;RPP=5.68014;RPPR=21.2579;RPL=84.0;RPR=99.0;EPP=47.1636;EPPR=3.98206;DPRA=0.0;ODDS=203.174;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983425;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.563;Dels=0.0;FS=6.2745;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9835;QD=16.09;ReadPosRankSum=-0.3485;SOR=0.979;ClippingRankSum=-0.919	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:48:1819:32:1243:-90.2211,0.0,-142.1:31:39:79:48,31:1040,0,1770:1:.:1:.:.:.:-0.000248759	0/1:129.501:284:133:5042:151:5709:-436.64,0.0,-376.637:151:53:283:132,151:5529,0,4723:.:1:1:.:.:.:-0.0141286
chr5	103500335	.	A	G	3172.2650000000003	REJECT	NS=2;DP=221;DPB=252.0;AC=2;AN=4;AF=0.5;RO=132;AO=119;PRO=0.0;PAO=0.0;QR=5043;QA=4490;PQR=0.0;PQA=0.0;SRF=39;SRR=93;SAF=36;SAR=83;SRP=50.9801;SAP=43.3194;AB=0.472222;ABP=4.69922;RUN=1;RPP=30.765;RPPR=29.3312;RPL=79.0;RPR=40.0;EPP=6.09416;EPPR=4.65535;DPRA=0.0;ODDS=180.425;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983193;PAIREDR=0.992424;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9645;Dels=0.0;FS=0.832;HaplotypeScore=6.7656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.291;QD=17.495;ReadPosRankSum=-0.6825;SOR=0.751;ClippingRankSum=2.385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:59:27:1060:32:1199:-92.0091,0.0,-79.484:31:53:58:27,31:1131,0,934:1:.:1:.:.:.:-0.000248759	0/1:129.501:191:105:3983:87:3291:-244.094,0.0,-306.328:87:45:191:104,87:3141,0,3818:.:1:1:.:.:.:-0.0141286
chr5	108016782	.	C	A	3785.38	REJECT	NS=2;DP=301;DPB=341.0;AC=2;AN=4;AF=0.5;RO=193;AO=148;PRO=0.0;PAO=0.0;QR=7207;QA=5446;PQR=0.0;PQA=0.0;SRF=62;SRR=131;SAF=48;SAR=100;SRP=56.577;SAP=42.6837;AB=0.434018;ABP=15.9054;RUN=1;RPP=12.9286;RPPR=23.8137;RPL=87.0;RPR=61.0;EPP=19.9713;EPPR=21.9235;DPRA=0.0;ODDS=236.395;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993243;PAIREDR=0.989637;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.6855;Dels=0.0;FS=1.5235;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.049;QD=14.78;ReadPosRankSum=0.4365;SOR=0.818;ClippingRankSum=2.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:41:1530:38:1411:-105.677,0.0,-116.338:38:48:78:39,38:1212,0,1367:1:.:1:.:.:.:-0.000248759	0/1:129.501:262:152:5677:110:4035:-292.089,0.0,-439.743:110:42:262:152,110:3747,0,5521:.:1:1:.:.:.:-0.0141286
chr5	111017980	.	A	C	3082.34	PASS	SOMATIC;NS=2;DP=435;DPB=435.0;AC=1;AN=3;AF=0.25;RO=318;AO=117;PRO=0.0;PAO=0.0;QR=12262;QA=4475;PQR=0.0;PQA=0.0;SRF=144;SRR=174;SAF=57;SAR=60;SRP=9.15598;SAP=3.17734;AB=0.358896;ABP=59.3887;RUN=1;RPP=4.51363;RPPR=3.44733;RPL=54.0;RPR=63.0;EPP=8.37402;EPPR=3.0103;DPRA=2.99083;ODDS=68.9431;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.645;Dels=0.0;FS=3.806;HaplotypeScore=7.8096;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.499;QD=12.4;ReadPosRankSum=1.5;SOR=0.506	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:102:109:4151:0:0:0.0,-29.5156,-373.582:0:0:102:96,0:.:0.0:0:.:.:.:0:.:.:0:-0.000248759	0/1:129.501:324:209:8111:117:4475:-314.207,0.0,-641.207:117:36:324:202,113:38.0:0.357:2:4046,0,8026:.:1:1:.:.:1:-0.0141286
chr5	112162854	.	T	C	1836.21	REJECT	NS=2;DP=368;DPB=419.0;AC=2;AN=4;AF=0.5;RO=322;AO=97;PRO=0.0;PAO=0.0;QR=12424;QA=3743;PQR=0.0;PQA=0.0;SRF=176;SRR=146;SAF=58;SAR=39;SRP=9.07963;SAP=11.0918;AB=0.231504;ABP=265.375;RUN=1;RPP=4.10723;RPPR=3.4419;RPL=45.0;RPR=52.0;EPP=11.0918;EPPR=13.8002;DPRA=0.0;ODDS=202.854;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0655;Dels=0.0;FS=3.894;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.215;QD=9.385;ReadPosRankSum=1.0935;SOR=0.9855;ClippingRankSum=-0.571	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.485:100:54:2075:47:1794:-134.113,0.0,-159.4:46:46:100:54,46:1541,0,1940:1:.:1:.:.:.:-0.000248759	0/1:118.485:318:268:10349:50:1949:-89.1488,0.0,-844.679:50:16:318:268,50:1233,0,10653:.:1:1:.:.:.:-0.0141286
chr5	112164561	.	G	A	1819.34	REJECT	NS=2;DP=307;DPB=363.0;AC=2;AN=4;AF=0.5;RO=275;AO=88;PRO=0.0;PAO=0.0;QR=10458;QA=3247;PQR=0.0;PQA=0.0;SRF=167;SRR=108;SAF=65;SAR=23;SRP=30.4972;SAP=46.5385;AB=0.242424;ABP=212.195;RUN=1;RPP=3.109;RPPR=23.5485;RPL=45.0;RPR=43.0;EPP=22.3561;EPPR=7.94546;DPRA=0.0;ODDS=44.4347;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977273;PAIREDR=0.992727;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0295;Dels=0.0;FS=5.197;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.833;QD=9.54;ReadPosRankSum=0.493;SOR=1.2995;ClippingRankSum=0.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:50:1922:61:2232:-170.813,0.0,-142.949:60:55:110:49,60:1990,0,1714:1:.:1:.:.:.:-0.000248759	0/1:129.501:251:225:8536:27:1015:-23.0714,0.0,-699.603:27:11:251:224,27:383,0,8744:.:1:1:.:.:.:-0.0141286
chr5	112175770	.	G	A	1916.83	REJECT	NS=2;DP=324;DPB=376.0;AC=2;AN=4;AF=0.5;RO=284;AO=92;PRO=0.0;PAO=0.0;QR=10914;QA=3492;PQR=0.0;PQA=0.0;SRF=160;SRR=124;SAF=34;SAR=58;SRP=12.9196;SAP=16.6056;AB=0.244681;ABP=215.907;RUN=1;RPP=4.52089;RPPR=6.71098;RPL=50.0;RPR=42.0;EPP=12.4515;EPPR=14.0512;DPRA=0.0;ODDS=124.677;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98913;PAIREDR=0.996479;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5305;Dels=0.0;FS=11.86;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1205;QD=10.195;ReadPosRankSum=0.614;SOR=1.1705;ClippingRankSum=-0.765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:48:1853:54:2040:-155.986,0.0,-139.146:53:52:101:48,53:1818,0,1767:1:.:1:.:.:.:-0.199208	0/1:129.501:273:236:9061:38:1452:-56.399,0.0,-740.809:38:14:273:235,38:804,0,9271:.:1:1:.:.:.:-0.0141286
chr5	112176325	.	G	A	1463.1799999999998	REJECT	NS=2;DP=361;DPB=399.0;AC=2;AN=4;AF=0.5;RO=321;AO=78;PRO=0.0;PAO=0.0;QR=12169;QA=2957;PQR=0.0;PQA=0.0;SRF=148;SRR=173;SAF=32;SAR=46;SRP=7.23824;SAP=8.46682;AB=0.195489;ABP=324.372;RUN=1;RPP=4.79202;RPPR=3.17942;RPL=35.0;RPR=43.0;EPP=3.45573;EPPR=3.55824;DPRA=0.0;ODDS=77.5074;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987179;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0325;Dels=0.0;FS=0.327;HaplotypeScore=7.7901;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2155;QD=10.405;ReadPosRankSum=-0.9;SOR=0.729;ClippingRankSum=1.336	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7595:74:33:1244:42:1603:-124.011,0.0,-91.6914:41:55:74:33,40:1436,0,1120:1:.:1:.:.:.:-0.199208	0/1:117.7595:324:288:10925:36:1354:-34.047,0.0,-894.952:36:11:324:288,36:525,0,11280:.:1:1:.:.:.:-0.0141286
chr5	112176559	.	T	G	2120.225	REJECT	NS=2;DP=368;DPB=424.0;AC=2;AN=4;AF=0.5;RO=322;AO=102;PRO=0.0;PAO=0.0;QR=12419;QA=3834;PQR=0.0;PQA=0.0;SRF=172;SRR=150;SAF=48;SAR=54;SRP=6.27425;SAP=3.7767;AB=0.240566;ABP=250.886;RUN=1;RPP=3.0103;RPPR=3.0103;RPL=51.0;RPR=51.0;EPP=11.5259;EPPR=5.70778;DPRA=0.0;ODDS=138.827;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996894;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1205;Dels=0.0;FS=3.803;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.235;QD=10.56;ReadPosRankSum=0.5085;SOR=0.768;ClippingRankSum=0.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:52:1994:60:2216:-169.091,0.0,-149.519:58:53:110:51,57:2029,0,1832:1:.:1:.:.:.:-0.000218184	0/1:129.501:312:270:10425:42:1618:-61.413,0.0,-853.134:42:13:312:270,42:888,0,10737:.:1:1:.:.:.:-0.0141286
chr5	112176756	.	T	A	5530.335	REJECT	NS=2;DP=353;DPB=406.0;AC=2;AN=4;AF=0.5;RO=205;AO=200;PRO=0.0;PAO=0.0;QR=7743;QA=7612;PQR=0.0;PQA=0.0;SRF=109;SRR=96;SAF=105;SAR=95;SRP=4.80044;SAP=4.09604;AB=0.492611;ABP=3.20284;RUN=1;RPP=4.09604;RPPR=3.8683;RPL=95.0;RPR=105.0;EPP=3.0103;EPPR=4.80044;DPRA=0.0;ODDS=334.211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3975;Dels=0.0;FS=1.049;HaplotypeScore=11.728;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1305;QD=17.58;ReadPosRankSum=0.6895;SOR=0.6905;ClippingRankSum=-0.676	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.383:103:52:1938:53:1970:-148.885,0.0,-145.996:52:50:103:51,51:1788,0,1729:1:.:1:.:.:.:-0.000218184	0/1:117.383:300:153:5805:147:5642:-426.269,0.0,-440.883:146:49:299:153,146:5400,0,5550:.:1:1:.:.:.:-0.0141286
chr5	112177171	.	G	A	2084.005	REJECT	NS=2;DP=354;DPB=411.0;AC=2;AN=4;AF=0.5;RO=311;AO=98;PRO=0.0;PAO=0.0;QR=11860;QA=3629;PQR=0.0;PQA=0.0;SRF=150;SRR=161;SAF=53;SAR=45;SRP=3.85515;SAP=4.4284;AB=0.238443;ABP=247.235;RUN=1;RPP=5.22609;RPPR=3.35243;RPL=54.0;RPR=44.0;EPP=4.4284;EPPR=8.10034;DPRA=0.0;ODDS=75.4325;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.996785;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9815;Dels=0.0;FS=3.5755;HaplotypeScore=13.6892;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.14;QD=10.475;ReadPosRankSum=0.3255;SOR=0.763;ClippingRankSum=1.476	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6955:110:47:1785:65:2359:-181.973,0.0,-130.357:63:57:109:46,61:2099,0,1614:1:.:1:.:.:.:-0.000218184	0/1:117.6955:298:264:10075:33:1270:-33.8372,0.0,-825.764:33:11:297:264,33:559,0,10341:.:1:1:.:.:.:-0.0141286
chr5	112213678	.	CTG	C	1228.25	REJECT	NS=2;DP=226;DPB=361.07;AC=2;AN=2;AF=0.0;RO=74;AO=26;PRO=66.6167;PAO=64.6167;QR=2767;QA=783;PQR=2423.58;PQA=2354.58;SRF=40;SRR=34;SAF=14;SAR=12;SRP=4.06669;SAP=3.34437;AB=0.115044;ABP=293.911;RUN=1;RPP=3.0103;RPPR=17.2129;RPL=13.0;RPR=13.0;EPP=4.34659;EPPR=12.5178;DPRA=0.0;ODDS=35.1193;GTI=0;TYPE=del;CIGAR=1M2D40M;NUMALT=5;MEANALT=14.0;LEN=2;MQM=59.9231;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:124.206:61:20:731:7:237:-29.6532,-15.6368,-74.1352:7:13:55:.:.:1:.:.:.:-0.000218184	./1:160.002:165:54:2036:19:546:-100.747,-69.0658,-241.069:19:13:148:.:.:1:.:.:.:-0.0141286
chr5	112213678	.	CTGTG	C	1228.25	REJECT	NS=2;DP=226;DPB=361.07;AC=2;AN=3;AF=0.25;RO=74;AO=51;PRO=66.6167;PAO=54.6167;QR=2767;QA=1621;PQR=2423.58;PQA=1980.58;SRF=40;SRR=34;SAF=24;SAR=27;SRP=4.06669;SAP=3.3935;AB=0.225664;ABP=150.747;RUN=1;RPP=5.09662;RPPR=17.2129;RPL=22.0;RPR=29.0;EPP=3.05288;EPPR=12.5178;DPRA=0.0;ODDS=35.1193;GTI=0;TYPE=del;CIGAR=1M4D38M;NUMALT=5;MEANALT=14.0;LEN=4;MQM=60.1961;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.889;FS=1.5;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.337;QD=8.32;RPA=20,18;RU=TG;ReadPosRankSum=0.934;SOR=0.671;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:124.206:61:20:731:4:110:-29.6532,-28.9628,-118.69:4:7:55:.:.:.:.:1:.:.:.:-0.000218184	0/1:129.501:250:54:2036:47:1511:-100.747,0.0,-245.428:65:42:155:79,84:3765,0,3694:.:1:1:.:.:.:-0.0141286
chr5	112213678	.	CTGTGTG	C	1228.25	REJECT	NS=2;DP=226;DPB=361.07;AC=2;AN=2;AF=0.0;RO=74;AO=13;PRO=66.6167;PAO=49.95;QR=2767;QA=395;PQR=2423.58;PQA=1813.58;SRF=40;SRR=34;SAF=6;SAR=7;SRP=4.06669;SAP=3.17734;AB=0.0787879;ABP=257.283;RUN=1;RPP=3.17734;RPPR=17.2129;RPL=6.0;RPR=7.0;EPP=3.17734;EPPR=12.5178;DPRA=0.0;ODDS=35.1193;GTI=0;TYPE=del;CIGAR=1M6D36M;NUMALT=5;MEANALT=18.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:124.206:61:20:731:0:0:-29.6532,-40.2223,-155.054:0:0:55:.:.:1:.:.:.:-0.000218184	./1:160.002:165:54:2036:13:395:-100.747,-99.7103,-479.737:13:9:148:.:.:1:.:.:.:-0.0141286
chr5	112213678	.	CTGTGTGTGTG	C	1228.25	REJECT	NS=2;DP=226;DPB=361.07;AC=2;AN=3;AF=0.25;RO=74;AO=31;PRO=66.6167;PAO=42.2;QR=2767;QA=951;PQR=2423.58;PQA=1524.83;SRF=40;SRR=34;SAF=18;SAR=13;SRP=4.06669;SAP=4.76149;AB=0.137168;ABP=261.435;RUN=1;RPP=3.64073;RPPR=17.2129;RPL=17.0;RPR=14.0;EPP=8.68415;EPPR=12.5178;DPRA=0.0;ODDS=35.1193;GTI=0;TYPE=del;CIGAR=1M10D32M;NUMALT=5;MEANALT=14.0;LEN=10;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.628;FS=6.36;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0.537;QD=9.09;ReadPosRankSum=0.4;SOR=0.636;ClippingRankSum=0.194	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:111.603:69:20:731:18:537:-29.6532,0.0,-144.555:29:43:66:37,41:1074,0,1198:1:.:1:.:.:.:-0.000218184	./1:160.002:165:54:2036:13:414:-100.747,-126.891,-808.612:13:9:148:.:.:.:.:1:.:.:.:-0.0141286
chr5	112213678	.	CTGTGTGTGTGTG	C	1228.25	REJECT	NS=2;DP=226;DPB=361.07;AC=2;AN=2;AF=0.0;RO=74;AO=8;PRO=66.6167;PAO=40.0;QR=2767;QA=189;PQR=2423.58;PQA=1439.83;SRF=40;SRR=34;SAF=2;SAR=6;SRP=4.06669;SAP=7.35324;AB=0.0353982;ABP=426.736;RUN=1;RPP=7.35324;RPPR=17.2129;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=12.5178;DPRA=0.0;ODDS=35.1193;GTI=0;TYPE=del;CIGAR=1M12D30M;NUMALT=5;MEANALT=14.0;LEN=12;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:124.206:61:20:731:6:115:-29.6532,-42.7055,-312.63:6:11:55:.:.:1:.:.:.:-0.000218184	./1:160.002:165:54:2036:2:74:-100.747,-165.34,-975.905:2:1:148:.:.:1:.:.:.:-0.0141286
chr5	112213747	.	GTAAC	G	1084.01	REJECT	NS=2;DP=332;DPB=394.111;AC=1;AN=4;AF=0.25;RO=256;AO=67;PRO=87.5;PAO=58.5;QR=9516;QA=2295;PQR=2935.0;PQA=1926.0;SRF=105;SRR=151;SAF=22;SAR=45;SRP=20.9589;SAP=20.1552;AB=0.483516;ABP=3.22506;RUN=1;RPP=5.63551;RPPR=7.11574;RPL=38.0;RPR=29.0;EPP=3.04271;EPPR=52.0041;DPRA=0.0;ODDS=10.4253;GTI=0;TYPE=del;CIGAR=1M4D13M;NUMALT=1;MEANALT=5.5;LEN=4;MQM=60.1493;MQMR=60.0391;PAIRED=1.0;PAIREDR=0.988281;technology.ILLUMINA=1.0;END=112213751;HOMLEN=13;HOMSEQ=TAACTAACTAACT;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=1.408;FS=6.496;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.225;QD=17.4;ReadPosRankSum=-1.015;SOR=1.394;ClippingRankSum=1.531	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.699:97:47:1700:44:1567:-114.499,0.0,-146.75:44:48:91:42,40:2021,0,1988:1:.:1:1:.:.:-0.000218184	0/0:45.2768:241:209:7816:23:728:0.0,-3.30084,-708.198:23:10:232:.:.:.:.:0:.:.:.:-0.0141286
chr5	112213805	.	C	G	1093.48	REJECT	NS=2;DP=308;DPB=349.0;AC=2;AN=4;AF=0.5;RO=287;AO=62;PRO=0.0;PAO=0.0;QR=10971;QA=2384;PQR=0.0;PQA=0.0;SRF=128;SRR=159;SAF=18;SAR=44;SRP=10.2813;SAP=26.6864;AB=0.17765;ABP=317.998;RUN=1;RPP=8.05372;RPPR=36.9745;RPL=37.0;RPR=25.0;EPP=3.0103;EPPR=18.3317;DPRA=0.0;ODDS=78.3667;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1613;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.255;Dels=0.0;FS=6.884;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.133;QD=7.725;ReadPosRankSum=0.2955;SOR=1.4255;ClippingRankSum=-0.658	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:49:1846:31:1185:-85.0235,0.0,-144.524:31:39:79:48,31:1093,0,1619:1:.:1:.:.:.:-0.000218184	0/1:129.501:268:238:9125:31:1199:-35.3852,0.0,-747.919:31:12:268:236,31:555,0,9312:.:1:1:.:.:.:-0.0141286
chr5	114014076	.	G	T	4286.35	REJECT	NS=2;DP=278;DPB=318.0;AC=2;AN=4;AF=0.5;RO=163;AO=155;PRO=0.0;PAO=0.0;QR=6176;QA=5976;PQR=0.0;PQA=0.0;SRF=52;SRR=111;SAF=42;SAR=113;SRP=49.3839;SAP=73.6322;AB=0.487421;ABP=3.44733;RUN=1;RPP=36.6471;RPPR=19.3296;RPL=102.0;RPR=53.0;EPP=6.16244;EPPR=6.86033;DPRA=0.0;ODDS=241.135;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98773;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.597;Dels=0.0;FS=1.634;HaplotypeScore=4.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1885;QD=18.045;ReadPosRankSum=0.238;SOR=0.848;ClippingRankSum=-0.097	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:38:1435:41:1544:-117.623,0.0,-107.789:40:52:78:37,40:1440,0,1271:1:.:1:.:.:.:-0.000218184	0/1:129.501:238:125:4741:114:4432:-333.947,0.0,-361.733:114:48:238:124,114:4254,0,4509:.:1:1:.:.:.:-0.0141286
chr5	115501700	.	G	A	4540.47	REJECT	NS=2;DP=309;DPB=358.0;AC=2;AN=4;AF=0.5;RO=192;AO=166;PRO=0.0;PAO=0.0;QR=7316;QA=6386;PQR=0.0;PQA=0.0;SRF=118;SRR=74;SAF=103;SAR=63;SRP=24.906;SAP=23.9402;AB=0.463687;ABP=7.11062;RUN=1;RPP=33.1493;RPPR=35.9895;RPL=59.0;RPR=107.0;EPP=30.69;EPPR=26.9417;DPRA=0.0;ODDS=286.347;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.887;Dels=0.0;FS=3.445;HaplotypeScore=5.929;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.723;QD=16.56;ReadPosRankSum=0.642;SOR=0.9325;ClippingRankSum=-0.793	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:51:1936:45:1700:-127.018,0.0,-148.257:45:47:96:51,45:1573,0,1740:1:.:1:.:.:.:-0.000218184	0/1:129.501:261:141:5380:121:4686:-350.553,0.0,-412.97:121:46:261:140,121:4472,0,5157:.:1:1:.:.:.:-0.0141286
chr5	115501792	.	T	C	4076.04	REJECT	NS=2;DP=314;DPB=367.0;AC=2;AN=4;AF=0.5;RO=213;AO=154;PRO=0.0;PAO=0.0;QR=8240;QA=5940;PQR=0.0;PQA=0.0;SRF=76;SRR=137;SAF=60;SAR=94;SRP=40.9448;SAP=19.3104;AB=0.419619;ABP=23.6067;RUN=1;RPP=23.3714;RPPR=16.9669;RPL=96.0;RPR=58.0;EPP=5.77399;EPPR=3.10205;DPRA=0.0;ODDS=289.71;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987013;PAIREDR=0.99061;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9315;Dels=0.0;FS=1.1635;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.306;QD=14.85;ReadPosRankSum=1.0215;SOR=0.573;ClippingRankSum=-0.431	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:60:2303:45:1735:-127.693,0.0,-178.844:44:42:104:60,44:1577,0,2229:1:.:1:.:.:.:-0.000218184	0/1:129.501:261:153:5937:109:4205:-307.269,0.0,-463.049:109:42:261:152,109:3929,0,5804:.:1:1:.:.:.:-0.0141286
chr5	118507216	.	CT	C	11893.95	REJECT	NS=2;DP=335;DPB=337.143;AC=4;AN=4;AF=1.0;RO=0;AO=379;PRO=7.0;PAO=14.0;QR=0;QA=13927;PQR=260.5;PQA=468.5;SRF=0;SRR=0;SAF=130;SAR=249;SRP=0.0;SAP=84.1454;AB=0.0;ABP=0.0;RUN=1;RPP=92.5334;RPPR=0.0;RPL=252.0;RPR=127.0;EPP=15.6667;EPPR=0.0;DPRA=0.0;ODDS=70.3079;GTI=0;TYPE=del;CIGAR=1M1D5M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994723;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=118507217;HOMLEN=2;HOMSEQ=TT;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.095;QD=32.35;RPA=3,2;RU=T;SOR=1.566;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.2615:106:0:0:106:3833:-344.963,-28.6593,0.0:105:100:106:19,90:3748,316,0:1:.:1:1:.:.:-0.000218184	1/1:122.2615:282:0:0:273:10094:-926.616,-75.7138,0.0:273:100:279:60,238:11337,840,0:.:1:1:1:.:.:-0.0141286
chr5	118507219	.	TGTAGGGTGACAGACTTCTTATTGCAAGAGGATATTGTCTTAT	GTAGGGTGACAGACTTCTTATTGCAAGAGGATATTGTCTTA	.	PASS	SOMATIC;AC=1;AN=4;END=118507261;HOMLEN=0;SVLEN=-43;SVTYPE=RPL;NTLEN=41	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.000218184	0/1:119,56:56:32:175:.:.:.:1:.:.:-0.0141286
chr5	121518309	.	G	A	14307.349999999999	REJECT	NS=2;DP=375;DPB=434.0;AC=4;AN=4;AF=1.0;RO=0;AO=434;PRO=0.0;PAO=0.0;QR=0;QA=16751;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=165;SAR=269;SRP=0.0;SAP=57.127;AB=0.0;ABP=0.0;RUN=1;RPP=7.51335;RPPR=0.0;RPL=232.0;RPR=202.0;EPP=5.01166;EPPR=0.0;DPRA=0.0;ODDS=77.3134;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990783;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.435;SOR=1.204	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:117:4498:-404.803,-31.7017,0.0:115:100:115:0,114:4835,343,0:1:.:1:.:.:.:-0.000218184	1/1:129.501:316:0:0:317:12253:-1102.04,-85.852,0.0:316:100:316:0,316:13678,942,0:.:1:1:.:.:.:-0.0141286
chr5	129025813	.	CCA	C	4536.88	REJECT	NS=2;DP=343;DPB=315.75;AC=2;AN=4;AF=0.5;RO=219;AO=171;PRO=13.5;PAO=5.5;QR=8343;QA=6313;PQR=485.0;PQA=186.0;SRF=104;SRR=115;SAF=83;SAR=88;SRP=4.21006;SAP=3.32777;AB=0.43734;ABP=16.3446;RUN=1;RPP=4.54684;RPPR=5.24126;RPL=80.0;RPR=91.0;EPP=6.68022;EPPR=21.3439;DPRA=0.0;ODDS=309.63;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.1754;MQMR=60.0;PAIRED=0.994152;PAIREDR=0.986301;technology.ILLUMINA=1.0;MQ0=0;END=129025815;HOMLEN=1;HOMSEQ=C;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=1.477;FS=0.4545;MLEAC=1;MLEAF=0.5;MQ=60.085;MQRankSum=0.0365;QD=18.165;ReadPosRankSum=1.341;SOR=0.7005;ClippingRankSum=-0.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.908:106:55:2069:49:1818:-134.923,0.0,-164.19:49:48:104:44,50:1983,0,2303:1:.:1:1:.:.:-0.000218184	0/1:122.908:291:164:6274:122:4495:-325.262,0.0,-505.558:122:43:286:141,130:5508,0,7741:.:1:1:1:.:.:-0.0141286
chr5	131915213	.	G	A	5259.88	REJECT	NS=2;DP=240;DPB=278.0;AC=2;AN=4;AF=0.5;RO=89;AO=189;PRO=0.0;PAO=0.0;QR=3282;QA=6908;PQR=0.0;PQA=0.0;SRF=33;SRR=56;SAF=60;SAR=129;SRP=15.9171;SAP=57.7107;AB=0.679856;ABP=81.1208;RUN=1;RPP=86.0203;RPPR=48.1232;RPL=137.0;RPR=52.0;EPP=4.95199;EPPR=3.0347;DPRA=0.0;ODDS=122.52;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989418;PAIREDR=0.977528;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.678;Dels=0.0;FS=3.656;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.567;QD=19.275;ReadPosRankSum=0.4655;SOR=0.9645;ClippingRankSum=0.57	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:50:1844:24:832:-54.892,0.0,-146.017:24:32:73:49,24:663,0,1760:1:.:1:.:.:.:-0.000218184	0/1:129.501:203:39:1438:165:6076:-491.426,0.0,-74.1776:164:81:203:39,164:6113,0,999:.:1:1:.:.:.:-0.0141286
chr5	131925483	.	G	C	5927.44	REJECT	NS=2;DP=342;DPB=391.0;AC=2;AN=4;AF=0.5;RO=186;AO=205;PRO=0.0;PAO=0.0;QR=7076;QA=7883;PQR=0.0;PQA=0.0;SRF=73;SRR=113;SAF=77;SAR=128;SRP=21.6896;SAP=30.5615;AB=0.524297;ABP=5.01516;RUN=1;RPP=9.63064;RPPR=4.69144;RPL=90.0;RPR=115.0;EPP=13.1897;EPPR=23.6043;DPRA=0.0;ODDS=293.99;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995122;PAIREDR=0.983871;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.167;Dels=0.0;FS=2.1295;HaplotypeScore=9.6898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.031;QD=17.945;ReadPosRankSum=0.706;SOR=0.867;ClippingRankSum=-0.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:52:1976:45:1725:-128.999,0.0,-151.58:45:46:96:51,45:1532,0,1862:1:.:1:.:.:.:-0.000218184	0/1:129.501:293:134:5100:160:6158:-474.257,0.0,-379.124:160:54:293:133,160:6003,0,4788:.:1:1:.:.:.:-0.0141286
chr5	131927550	.	AT	A	59.3753	REJECT	NS=2;DP=223;DPB=245.812;AC=2;AN=3;AF=0.25;RO=195;AO=12;PRO=27.5;PAO=27.5;QR=7361;QA=431;PQR=919.833;PQA=919.833;SRF=147;SRR=48;SAF=11;SAR=1;SRP=112.152;SAP=21.1059;AB=0.127273;ABP=69.3784;RUN=1;RPP=9.52472;RPPR=59.1456;RPL=3.0;RPR=9.0;EPP=5.9056;EPPR=3.11052;DPRA=0.0;ODDS=13.6717;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=61.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994872;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59.3753:55:40:1510:7:265:-11.1218,0.0,-123.28:7:14:50:.:.:1:.:.:.:-0.000218184	./1:149.884:168:155:5851:5:166:0.0,-28.4165,-511.523:5:3:160:.:.:1:.:.:.:-0.0141286
chr5	131927563	.	C	T	59.3753	REJECT	NS=2;DP=223;DPB=245.812;AC=2;AN=2;AF=0.0;RO=195;AO=3;PRO=27.5;PAO=2.0;QR=7361;QA=48;PQR=919.833;PQA=23.3333;SRF=147;SRR=48;SAF=3;SAR=0;SRP=112.152;SAP=9.52472;AB=0.0545455;ABP=97.8049;RUN=1;RPP=9.52472;RPPR=59.1456;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=3.11052;DPRA=0.327381;ODDS=13.6717;GTI=0;TYPE=snp;CIGAR=13M1X2M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994872;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.3753:55:40:1510:3:48:-11.1218,-24.4285,-212.241:3:6:50:.:.:1:.:.:.:-0.000218184	./1:149.884:168:155:5851:0:0:0.0,-63.6749,-779.897:0:0:160:.:.:1:.:.:.:-0.0141286
chr5	138036255	.	G	T	916.9975	REJECT	NS=2;DP=204;DPB=230.0;AC=2;AN=4;AF=0.5;RO=182;AO=48;PRO=0.0;PAO=0.0;QR=7051;QA=1824;PQR=0.0;PQA=0.0;SRF=118;SRR=64;SAF=34;SAR=14;SRP=37.8016;SAP=21.1059;AB=0.208696;ABP=172.536;RUN=1;RPP=29.068;RPPR=103.996;RPL=12.0;RPR=36.0;EPP=3.73412;EPPR=6.06468;DPRA=0.0;ODDS=55.7325;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.076;Dels=0.0;FS=2.9385;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.746;QD=9.88;ReadPosRankSum=-0.047;SOR=1.1035;ClippingRankSum=-0.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:26:990:26:983:-74.4738,0.0,-75.0972:26:50:52:26,26:940,0,942:1:.:1:.:.:.:-0.000218184	0/1:129.501:178:156:6061:22:841:-27.4342,0.0,-497.056:22:12:178:156,22:425,0,6252:.:1:1:.:.:.:-0.0141286
chr5	138117938	.	A	G	5836.1	REJECT	NS=2;DP=219;DPB=254.0;AC=2;AN=4;AF=0.5;RO=57;AO=197;PRO=0.0;PAO=0.0;QR=2157;QA=7440;PQR=0.0;PQA=0.0;SRF=37;SRR=20;SAF=123;SAR=74;SRP=14.02;SAP=29.4758;AB=0.775591;ABP=170.573;RUN=1;RPP=78.9457;RPPR=11.5819;RPL=57.0;RPR=140.0;EPP=8.84131;EPPR=3.35316;DPRA=0.0;ODDS=96.9595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4685;Dels=0.0;FS=7.257;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0455;QD=26.255;ReadPosRankSum=0.5855;SOR=0.7495;ClippingRankSum=0.539	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:69:30:1134:39:1467:-113.418,0.0,-83.4295:39:57:69:30,39:1386,0,1037:1:.:1:.:.:.:-0.000218184	0/1:129.501:185:27:1023:158:5973:-487.266,0.0,-42.3426:158:85:185:27,158:6102,0,592:.:1:1:.:.:.:-0.0141286
chr5	138221989	.	G	C	1588.48	REJECT	NS=2;DP=292;DPB=325.0;AC=2;AN=4;AF=0.5;RO=244;AO=81;PRO=0.0;PAO=0.0;QR=9252;QA=3094;PQR=0.0;PQA=0.0;SRF=88;SRR=156;SAF=19;SAR=62;SRP=44.1615;SAP=52.5788;AB=0.249231;ABP=180.53;RUN=1;RPP=7.5409;RPPR=18.709;RPL=47.0;RPR=34.0;EPP=3.68051;EPPR=46.6177;DPRA=0.0;ODDS=192.127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987654;PAIREDR=0.991803;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0575;Dels=0.0;FS=5.929;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.179;QD=10.92;ReadPosRankSum=0.0485;SOR=1.3395;ClippingRankSum=-0.051	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7705:62:33:1198:31:1156:-86.7944,0.0,-90.5603:30:48:62:32,29:1051,0,1076:1:.:1:.:.:.:-0.000218184	0/1:117.7705:260:211:8054:50:1938:-103.652,0.0,-653.77:50:19:260:209,50:1412,0,8107:.:1:1:.:.:.:-0.0141286
chr5	138266546	.	G	A	2764.44	REJECT	NS=2;DP=400;DPB=467.0;AC=2;AN=4;AF=0.5;RO=336;AO=131;PRO=0.0;PAO=0.0;QR=12774;QA=4992;PQR=0.0;PQA=0.0;SRF=193;SRR=143;SAF=73;SAR=58;SRP=19.1671;SAP=6.73993;AB=0.280514;ABP=198.42;RUN=1;RPP=4.35297;RPPR=3.0103;RPL=61.0;RPR=70.0;EPP=3.15949;EPPR=8.82674;DPRA=0.0;ODDS=236.671;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992366;PAIREDR=0.997024;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4375;Dels=0.0;FS=0.9075;HaplotypeScore=6.7569;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7205;QD=11.275;ReadPosRankSum=1.3145;SOR=0.629;ClippingRankSum=1.098	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.325:130:59:2268:74:2835:-219.08,0.0,-168.049:72:55:130:57,71:2393,0,1991:1:.:1:.:.:.:-0.000218184	0/1:117.325:333:277:10506:57:2157:-103.624,0.0,-854.503:57:17:333:276,57:1433,0,10647:.:1:1:.:.:.:-0.0141286
chr5	147014141	.	C	T	2644.71	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=293;AO=100;PRO=0.0;PAO=0.0;QR=11309;QA=3883;PQR=0.0;PQA=0.0;SRF=137;SRR=156;SAF=56;SAR=44;SRP=5.68573;SAP=6.13722;AB=0.343643;ABP=64.804;RUN=1;RPP=3.79203;RPPR=22.2867;RPL=53.0;RPR=47.0;EPP=7.26639;EPPR=5.68573;DPRA=2.85294;ODDS=64.6152;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996587;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.583;Dels=0.0;FS=8.615;HaplotypeScore=5.9624;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.778;QD=11.91;ReadPosRankSum=-0.322;SOR=0.849	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.699:101:102:3930:0:0:0.0,-27.6361,-353.721:0:0:101:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.000218184	0/1:122.3495:291:191:7379:100:3883:-270.454,0.0,-584.877:100:34:291:182,93:39.0:0.333:2:3493,0,7363:.:1:1:.:.:1:-0.0141286
chr5	149435608	.	G	C	4073.29	REJECT	NS=2;DP=254;DPB=293.0;AC=2;AN=4;AF=0.5;RO=149;AO=144;PRO=0.0;PAO=0.0;QR=5656;QA=5541;PQR=0.0;PQA=0.0;SRF=95;SRR=54;SAF=91;SAR=53;SRP=27.5086;SAP=24.7853;AB=0.491468;ABP=3.19558;RUN=1;RPP=40.7095;RPPR=3.37464;RPL=47.0;RPR=97.0;EPP=3.25157;EPPR=15.2667;DPRA=0.0;ODDS=212.289;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.831;Dels=0.0;FS=4.024;HaplotypeScore=3.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5155;QD=16.6;ReadPosRankSum=0.386;SOR=0.932;ClippingRankSum=0.048	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.24:76:44:1685:34:1301:-96.0039,0.0,-130.57:33:43:76:43,32:1086,0,1572:1:.:1:.:.:.:-0.000218184	0/1:122.24:215:105:3971:110:4240:-323.193,0.0,-299.003:110:51:215:105,110:4135,0,3789:.:1:1:.:.:.:-0.0141286
chr5	149435759	.	G	A	5129.785	REJECT	NS=2;DP=351;DPB=410.0;AC=2;AN=4;AF=0.5;RO=217;AO=193;PRO=0.0;PAO=0.0;QR=8264;QA=7092;PQR=0.0;PQA=0.0;SRF=124;SRR=93;SAF=103;SAR=90;SRP=12.6268;SAP=4.91174;AB=0.470732;ABP=6.06095;RUN=1;RPP=3.02155;RPPR=3.82085;RPL=97.0;RPR=96.0;EPP=3.11156;EPPR=8.30389;DPRA=0.0;ODDS=277.342;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994819;PAIREDR=0.986175;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0045;Dels=0.0;FS=1.6285;HaplotypeScore=6.8319;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.639;QD=15.325;ReadPosRankSum=-0.2865;SOR=0.595;ClippingRankSum=-0.304	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:69:2654:47:1694:-121.037,0.0,-207.452:47:41:115:68,47:1570,0,2547:1:.:1:.:.:.:-0.000218184	0/1:129.501:293:148:5610:146:5398:-405.968,0.0,-425.064:145:49:293:148,145:5080,0,5366:.:1:1:.:.:.:-0.0141286
chr5	149449526	.	C	T	3265.17	PASS	SOMATIC;NS=2;DP=403;DPB=403.0;AC=1;AN=3;AF=0.25;RO=283;AO=120;PRO=0.0;PAO=0.0;QR=10878;QA=4628;PQR=0.0;PQA=0.0;SRF=162;SRR=121;SAF=68;SAR=52;SRP=15.9087;SAP=7.64277;AB=0.38961;ABP=35.6106;RUN=1;RPP=4.16842;RPPR=3.07936;RPL=64.0;RPR=56.0;EPP=7.64277;EPPR=3.38628;DPRA=3.24211;ODDS=60.2985;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991667;PAIREDR=0.996466;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.712;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.555;QD=13.81;ReadPosRankSum=0.379;SOR=0.71	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:95:3656:0:0:0.0,-25.7614,-329.126:0:0:93:91,0:.:0.0:0:.:.:.:0:.:.:0:-0.000218184	0/1:129.501:307:188:7222:120:4628:-332.844,0.0,-566.158:119:39:307:183,114:38.0:0.38:2:4268,0,7159:.:1:1:.:.:1:-0.0141286
chr5	149456771	.	CT	AA	5309.165000000001	REJECT	NS=2;DP=333;DPB=384.0;AC=2;AN=4;AF=0.5;RO=196;AO=182;PRO=2.0;PAO=6.0;QR=7387;QA=6900;PQR=0.0;PQA=201.0;SRF=116;SRR=80;SAF=113;SAR=69;SRP=17.3686;SAP=26.109;AB=0.478947;ABP=4.47319;RUN=1;RPP=9.88265;RPPR=3.40914;RPL=79.0;RPR=103.0;EPP=6.876;EPPR=4.11819;DPRA=0.0;ODDS=282.215;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=2.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=-0.7875;Dels=0.0;FS=7.572;HaplotypeScore=5.912;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3925;QD=18.945;ReadPosRankSum=-0.5745;SOR=1.214;ClippingRankSum=-1.253	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:50:1894:42:1597:-124.681,0.0,-145.028:46:48:96:50,51:2017,0,3579:1:.:1:.:.:.:-0.000218184	0/1:129.501:287:146:5493:140:5303:-424.052,0.0,-415.023:141:49:286:145,142:5253,0,5244:.:1:1:.:.:.:-0.0141286
chr5	149457678	.	G	A	5506.845	REJECT	NS=2;DP=372;DPB=425.0;AC=2;AN=4;AF=0.5;RO=223;AO=202;PRO=0.0;PAO=0.0;QR=8544;QA=7704;PQR=0.0;PQA=0.0;SRF=121;SRR=102;SAF=109;SAR=93;SRP=6.52555;SAP=5.76226;AB=0.475294;ABP=5.26352;RUN=1;RPP=20.2101;RPPR=5.82445;RPL=81.0;RPR=121.0;EPP=8.21323;EPPR=3.25374;DPRA=0.0;ODDS=327.583;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985149;PAIREDR=0.991031;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.123;Dels=0.0;FS=0.571;HaplotypeScore=6.923;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.153;QD=16.865;ReadPosRankSum=-0.4615;SOR=0.6385;ClippingRankSum=-0.928	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:50:1900:55:2057:-156.706,0.0,-142.58:53:52:102:48,52:1750,0,1675:1:.:1:.:.:.:-0.000218184	0/1:129.501:319:173:6644:147:5647:-421.256,0.0,-510.922:147:46:319:172,147:5348,0,6409:.:1:1:.:.:.:-0.0141286
chr5	149460553	.	A	G	5456.445	REJECT	NS=2;DP=375;DPB=431.0;AC=2;AN=4;AF=0.5;RO=229;AO=202;PRO=0.0;PAO=0.0;QR=8740;QA=7711;PQR=0.0;PQA=0.0;SRF=82;SRR=147;SAF=89;SAR=113;SRP=43.0735;SAP=9.20222;AB=0.468677;ABP=6.68316;RUN=1;RPP=3.3973;RPPR=5.14384;RPL=104.0;RPR=98.0;EPP=11.4382;EPPR=10.985;DPRA=0.0;ODDS=362.295;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995633;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3705;Dels=0.0;FS=7.517;HaplotypeScore=7.867;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.3495;QD=16.995;ReadPosRankSum=-0.1795;SOR=0.356;ClippingRankSum=-1.997	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:56:2116:55:2166:-164.863,0.0,-160.366:55:50:110:55,55:1973,0,1876:1:.:1:.:.:.:-0.000218184	0/1:129.501:320:173:6624:147:5545:-412.102,0.0,-509.171:147:46:320:173,147:5247,0,6427:.:1:1:.:.:.:-0.0141286
chr5	149495395	.	T	C	2542.76	PASS	SOMATIC;NS=2;DP=410;DPB=410.0;AC=1;AN=3;AF=0.25;RO=311;AO=99;PRO=0.0;PAO=0.0;QR=12037;QA=3848;PQR=0.0;PQA=0.0;SRF=220;SRR=91;SAF=60;SAR=39;SRP=119.202;SAP=12.6832;AB=0.315287;ABP=96.0655;RUN=1;RPP=9.34924;RPPR=6.08946;RPL=41.0;RPR=58.0;EPP=3.03223;EPPR=10.6139;DPRA=3.27083;ODDS=60.8716;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996785;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.648;Dels=0.0;FS=8.066;HaplotypeScore=9.8699;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.664;QD=10.63;ReadPosRankSum=-0.479;SOR=0.368	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:95:96:3663:0:0:0.0,-26.0102,-329.726:0:0:95:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000218184	0/1:129.501:314:215:8374:99:3848:-261.04,0.0,-668.124:99:32:314:204,97:38.0:0.332:2:3365,0,8422:.:1:1:.:.:1:-0.0141286
chr5	149497177	.	T	C	1661.91	PASS	SOMATIC;NS=2;DP=371;DPB=371.0;AC=1;AN=3;AF=0.25;RO=289;AO=80;PRO=0.0;PAO=0.0;QR=10321;QA=2776;PQR=0.0;PQA=0.0;SRF=212;SRR=77;SAF=46;SAR=34;SRP=139.948;SAP=6.91895;AB=0.284698;ABP=116.151;RUN=1;RPP=9.95901;RPPR=16.9032;RPL=32.0;RPR=48.0;EPP=24.2907;EPPR=49.9036;DPRA=3.12222;ODDS=56.374;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.8893;PAIRED=0.975;PAIREDR=0.986159;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.954;Dels=0.0;FS=19.456;HaplotypeScore=38.7037;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.121;QD=7.93;ReadPosRankSum=0.686;SOR=0.204	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:89:3205:0:0:0.0,-24.0569,-288.493:0:0:87:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.000218184	0/1:129.501:276:200:7116:80:2776:-174.443,0.0,-566.222:78:28:275:187,70:37.0:0.263:2:2217,0,6867:.:1:1:.:.:1:-0.0141286
chr5	149499672	.	T	C	2051.09	PASS	SOMATIC;NS=2;DP=368;DPB=368.0;AC=1;AN=3;AF=0.25;RO=283;AO=84;PRO=0.0;PAO=0.0;QR=10938;QA=3190;PQR=0.0;PQA=0.0;SRF=102;SRR=181;SAF=30;SAR=54;SRP=50.8978;SAP=17.9004;AB=0.307692;ABP=90.7044;RUN=1;RPP=8.07707;RPPR=6.39411;RPL=49.0;RPR=35.0;EPP=11.386;EPPR=8.60395;DPRA=2.87368;ODDS=59.6455;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.398;Dels=0.0;FS=1.036;HaplotypeScore=5.8903;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.062;QD=9.93;ReadPosRankSum=0.411;SOR=0.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:94:3604:0:0:0.0,-25.4777,-324.428:0:0:92:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.000218184	0/1:129.501:273:189:7334:84:3190:-212.997,0.0,-585.737:84:31:273:182,82:38.0:0.314:2:2739,0,7385:.:1:1:.:.:1:-0.0141286
chr5	149505489	.	A	G	11141.8	REJECT	NS=2;DP=408;DPB=474.0;AC=2;AN=4;AF=0.5;RO=111;AO=362;PRO=0.0;PAO=0.0;QR=4264;QA=13901;PQR=0.0;PQA=0.0;SRF=53;SRR=58;SAF=191;SAR=171;SRP=3.49937;SAP=5.40972;AB=0.763713;ABP=289.333;RUN=1;RPP=14.6235;RPPR=3.96888;RPL=203.0;RPR=159.0;EPP=5.91359;EPPR=3.18637;DPRA=0.0;ODDS=142.015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.984;Dels=0.0;FS=1.864;HaplotypeScore=3.8711;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0785;QD=25.275;ReadPosRankSum=0.878;SOR=0.77;ClippingRankSum=0.596	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:129:66:2538:64:2430:-183.458,0.0,-193.174:63:49:129:65,63:2112,0,2292:1:.:1:.:.:.:-0.000218184	0/1:129.501:343:45:1726:298:11471:-938.846,0.0,-62.3274:298:87:343:45,298:11828,0,896:.:1:1:.:.:.:-0.0141286
chr5	149506703	.	G	A	1835.04	REJECT	NS=2;DP=363;DPB=419.0;AC=2;AN=4;AF=0.5;RO=328;AO=89;PRO=0.0;PAO=0.0;QR=12617;QA=3366;PQR=0.0;PQA=0.0;SRF=164;SRR=164;SAF=46;SAR=43;SRP=3.0103;SAP=3.22989;AB=0.212411;ABP=304.016;RUN=1;RPP=11.8182;RPPR=12.5701;RPL=35.0;RPR=54.0;EPP=3.0347;EPPR=3.03678;DPRA=0.0;ODDS=60.9849;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984756;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6865;Dels=0.0;FS=1.189;HaplotypeScore=4.8065;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2795;QD=9.8;ReadPosRankSum=1.429;SOR=0.852;ClippingRankSum=-1.534	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8115:109:53:2070:57:2130:-161.898,0.0,-156.508:56:52:109:52,56:1994,0,1833:1:.:1:.:.:.:-0.000218184	0/1:117.8115:308:275:10547:32:1236:-28.0301,0.0,-865.509:32:10:306:274,32:459,0,10850:.:1:1:.:.:.:-0.0141286
chr5	149506836	.	G	T	2305.6949999999997	REJECT	NS=2;DP=339;DPB=407.0;AC=2;AN=4;AF=0.5;RO=300;AO=107;PRO=0.0;PAO=0.0;QR=11392;QA=3916;PQR=0.0;PQA=0.0;SRF=165;SRR=135;SAF=49;SAR=58;SRP=9.52472;SAP=4.65412;AB=0.262899;ABP=201.745;RUN=1;RPP=3.51765;RPPR=8.68508;RPL=56.0;RPR=51.0;EPP=6.44001;EPPR=5.35549;DPRA=0.0;ODDS=97.9519;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981308;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2425;Dels=0.0;FS=4.9215;HaplotypeScore=4.9125;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.559;QD=9.515;ReadPosRankSum=-0.982;SOR=0.6465;ClippingRankSum=-0.685	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:133:64:2474:71:2622:-199.375,0.0,-186.072:69:52:133:64,68:2280,0,2163:1:.:1:.:.:.:-0.000218184	0/1:129.501:272:236:8918:36:1294:-42.7832,0.0,-728.557:36:13:272:236,36:600,0,9095:.:1:1:.:.:.:-0.0141286
chr5	149507396	.	T	TAA	85.9136	REJECT	NS=2;DP=22;DPB=110.8;AC=2;AN=4;AF=0.5;RO=3;AO=4;PRO=91.8333;PAO=89.3333;QR=113;QA=85;PQR=3144.5;PQA=3056.5;SRF=0;SRR=3;SAF=1;SAR=3;SRP=9.52472;SAP=5.18177;AB=0.181818;ABP=22.3561;RUN=1;RPP=11.6962;RPPR=3.73412;RPL=0.0;RPR=4.0;EPP=5.18177;EPPR=3.73412;DPRA=0.0;ODDS=1.66122;GTI=1;TYPE=ins;CIGAR=1M2I34M;NUMALT=2;MEANALT=7.5;LEN=2;MQM=51.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.755127:5:1:39:1:16:-0.357721,0.0,-8.35747:1:50:2:.:.:1:.:.:.:-1.6638	0/1:85.7117:17:2:74:3:69:-12.1459,0.0,-10.2645:3:43:7:.:.:1:.:.:.:-0.0141286
chr5	149507423	.	CTTTGG	ACTTTGA	85.9136	REJECT	NS=2;DP=22;DPB=110.8;AC=2;AN=2;AF=0.0;RO=3;AO=2;PRO=91.8333;PAO=24.8333;QR=113;QA=32;PQR=3144.5;PQA=801.0;SRF=0;SRR=3;SAF=2;SAR=0;SRP=9.52472;SAP=7.35324;AB=0.117647;ABP=24.5973;RUN=1;RPP=3.0103;RPPR=3.73412;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=3.73412;DPRA=0.0;ODDS=1.66122;GTI=1;TYPE=complex;CIGAR=1M1I31M1X2M;NUMALT=2;MEANALT=11.0;LEN=36;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.755127:5:1:39:0:0:-0.357721,-13.6609,-154.468:0:0:2:.:.:1:.:.:.:-1.6638	./1:85.7117:17:2:74:2:32:-12.1459,-61.6588,-672.626:2:29:7:.:.:1:.:.:.:-0.0141286
chr5	149508475	.	C	T	6514.525	REJECT	NS=2;DP=399;DPB=461.0;AC=2;AN=4;AF=0.5;RO=224;AO=237;PRO=0.0;PAO=0.0;QR=8477;QA=9055;PQR=0.0;PQA=0.0;SRF=92;SRR=132;SAF=122;SAR=115;SRP=18.5208;SAP=3.45925;AB=0.5141;ABP=3.80635;RUN=1;RPP=3.23936;RPPR=3.04908;RPL=116.0;RPR=121.0;EPP=16.9462;EPPR=14.2166;DPRA=0.0;ODDS=357.623;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991561;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.054;Dels=0.0;FS=10.352;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.01;QD=18.625;ReadPosRankSum=1.287;SOR=0.492;ClippingRankSum=1.403	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.81:122:56:2123:68:2573:-197.977,0.0,-157.459:67:55:122:55,66:2326,0,1952:1:.:1:.:.:.:-0.000492842	0/1:118.81:337:168:6354:169:6482:-491.772,0.0,-480.246:169:50:337:168,169:6236,0,6062:.:1:1:.:.:.:-0.0141286
chr5	149508544	.	C	G	6949.125	REJECT	NS=2;DP=432;DPB=495.0;AC=2;AN=4;AF=0.5;RO=239;AO=255;PRO=0.0;PAO=0.0;QR=9099;QA=9610;PQR=0.0;PQA=0.0;SRF=130;SRR=109;SAF=134;SAR=121;SRP=7.01708;SAP=4.44943;AB=0.515152;ABP=3.99733;RUN=1;RPP=3.42756;RPPR=3.4555;RPL=131.0;RPR=124.0;EPP=5.4713;EPPR=3.23744;DPRA=0.0;ODDS=354.856;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995816;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.806;Dels=0.0;FS=1.645;HaplotypeScore=4.9153;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.25;QD=18.335;ReadPosRankSum=-0.249;SOR=0.5735;ClippingRankSum=1.965	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8635:124:54:2095:70:2614:-201.637,0.0,-154.971:69:56:123:54,69:2345,0,1943:1:.:1:.:.:.:-0.000492842	0/1:118.8635:370:185:7004:185:6996:-529.048,0.0,-529.814:185:50:370:185,185:6686,0,6687:.:1:1:.:.:.:-0.0141286
chr5	149509111	.	C	T	10238.885	REJECT	NS=2;DP=442;DPB=509.0;AC=3;AN=4;AF=0.75;RO=144;AO=365;PRO=0.0;PAO=0.0;QR=5561;QA=14075;PQR=0.0;PQA=0.0;SRF=78;SRR=66;SAF=179;SAR=186;SRP=5.18177;SAP=3.30181;AB=0.618037;ABP=48.6343;RUN=1;RPP=14.0104;RPPR=3.25157;RPL=161.0;RPR=204.0;EPP=3.73016;EPPR=6.8707;DPRA=0.0;ODDS=83.3486;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99726;PAIREDR=0.993056;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.275;Dels=0.0;FS=3.47;HaplotypeScore=3.9045;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.69;QD=25.525;ReadPosRankSum=0.548;SOR=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:130:0:0:132:5063:-455.622,-35.7719,0.0:130:100:130:0,129:5239,388,0:1:.:1:.:.:.:-0.000492842	0/1:129.501:376:144:5561:233:9012:-708.395,0.0,-398.053:233:62:376:143,233:8938,0,5080:.:1:1:.:.:.:-0.0141286
chr5	149509270	.	A	G	7757.865	REJECT	NS=2;DP=338;DPB=392.0;AC=3;AN=4;AF=0.75;RO=108;AO=284;PRO=0.0;PAO=0.0;QR=4075;QA=10784;PQR=0.0;PQA=0.0;SRF=44;SRR=64;SAF=146;SAR=138;SRP=11.0528;SAP=3.49965;AB=0.622378;ABP=40.2138;RUN=1;RPP=6.06871;RPPR=3.09072;RPL=152.0;RPR=132.0;EPP=6.06871;EPPR=5.02092;DPRA=0.0;ODDS=67.0994;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996479;PAIREDR=0.981481;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.279;Dels=0.0;FS=5.318;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.068;QD=26.495;ReadPosRankSum=0.016;SOR=0.618	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.403:105:0:0:106:4034:-363.086,-28.7149,0.0:105:100:105:0,105:4392,316,0:1:.:1:.:.:.:-0.000492842	0/1:121.403:285:108:4075:178:6750:-529.72,0.0,-289.12:178:62:285:107,178:6681,0,3654:.:1:1:.:.:.:-0.0141286
chr5	156002438	.	G	A	3137.19	PASS	SOMATIC;NS=2;DP=413;DPB=413.0;AC=1;AN=3;AF=0.25;RO=295;AO=117;PRO=0.0;PAO=0.0;QR=11333;QA=4506;PQR=0.0;PQA=0.0;SRF=165;SRR=130;SAF=62;SAR=55;SRP=12.0274;SAP=3.91972;AB=0.375;ABP=45.354;RUN=1;RPP=14.61;RPPR=3.37099;RPL=46.0;RPR=71.0;EPP=11.1951;EPPR=3.37099;DPRA=3.08911;ODDS=63.993;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99661;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.103;Dels=0.0;FS=0.0;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.594;QD=13.06;ReadPosRankSum=-0.701;SOR=0.709	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:97:101:3849:0:0:0.0,-27.3658,-346.445:0:0:97:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000492842	0/1:129.501:312:194:7484:117:4506:-321.059,0.0,-588.907:117:38:311:184,112:38.0:0.381:2:4102,0,7426:.:1:1:.:.:1:-0.0141286
chr5	158204425	.	A	G	6116.025	REJECT	NS=2;DP=353;DPB=405.0;AC=2;AN=4;AF=0.5;RO=189;AO=216;PRO=0.0;PAO=0.0;QR=7346;QA=8225;PQR=0.0;PQA=0.0;SRF=109;SRR=80;SAF=142;SAR=74;SRP=12.6728;SAP=49.4959;AB=0.533333;ABP=6.91895;RUN=1;RPP=8.80089;RPPR=7.15793;RPL=96.0;RPR=120.0;EPP=26.1727;EPPR=26.2761;DPRA=0.0;ODDS=330.177;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994709;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1985;Dels=0.0;FS=5.3895;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.171;QD=18.505;ReadPosRankSum=-0.305;SOR=1.0795;ClippingRankSum=-0.927	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8235:102:50:1929:53:1977:-150.054,0.0,-145.709:52:51:102:50,52:1747,0,1530:1:.:1:.:.:.:-0.000492842	0/1:118.8235:301:139:5417:163:6248:-480.181,0.0,-405.428:163:54:301:138,163:6095,0,5135:.:1:1:.:.:.:-0.0141286
chr5	170820024	.	G	A	2217.65	PASS	SOMATIC;NS=2;DP=344;DPB=344.0;AC=1;AN=3;AF=0.25;RO=256;AO=87;PRO=0.0;PAO=0.0;QR=9628;QA=3373;PQR=0.0;PQA=0.0;SRF=105;SRR=151;SAF=27;SAR=60;SRP=20.9589;SAP=30.1911;AB=0.360996;ABP=43.4574;RUN=1;RPP=84.1036;RPPR=109.412;RPL=72.0;RPR=15.0;EPP=4.23331;EPPR=7.11574;DPRA=2.33981;ODDS=65.1955;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988506;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.994;Dels=0.0;FS=2.436;HaplotypeScore=5.8793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.042;QD=12.72;ReadPosRankSum=-1.731;SOR=0.89	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:102:103:3863:0:0:0.0,-27.8881,-347.696:0:0:102:101,0:.:0.0:0:.:.:.:0:.:.:0:-0.000492842	0/1:129.501:241:153:5765:87:3373:-238.422,0.0,-453.607:87:36:240:147,85:38.0:0.369:2:3094,0,5702:.:1:1:.:.:1:-0.0141286
chr5	176516631	.	G	A	1799.6799999999998	REJECT	NS=2;DP=351;DPB=398.0;AC=2;AN=4;AF=0.5;RO=305;AO=93;PRO=0.0;PAO=0.0;QR=11570;QA=3523;PQR=0.0;PQA=0.0;SRF=163;SRR=142;SAF=52;SAR=41;SRP=6.15004;SAP=5.83555;AB=0.233668;ABP=248.223;RUN=1;RPP=6.95631;RPPR=4.21351;RPL=40.0;RPR=53.0;EPP=6.95631;EPPR=34.9701;DPRA=0.0;ODDS=173.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996721;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.066;Dels=0.0;FS=3.415;HaplotypeScore=7.7892;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.113;QD=10.41;ReadPosRankSum=0.5495;SOR=0.94;ClippingRankSum=-1.199	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:46:1794:46:1760:-133.495,0.0,-136.557:45:49:91:46,44:1597,0,1548:1:.:1:.:.:.:-0.000492842	0/1:129.501:305:259:9776:47:1763:-76.1788,0.0,-796.46:47:15:305:258,47:1063,0,9921:.:1:1:.:.:.:-0.0141286
chr5	176516953	.	A	G	9860.735	REJECT	NS=2;DP=266;DPB=307.0;AC=4;AN=4;AF=1.0;RO=1;AO=306;PRO=0.0;PAO=0.0;QR=2;QA=11578;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=97;SAR=209;SRP=5.18177;SAP=92.0265;AB=0.0;ABP=0.0;RUN=1;RPP=6.44492;RPPR=5.18177;RPL=164.0;RPR=142.0;EPP=32.0768;EPPR=5.18177;DPRA=0.0;ODDS=54.2128;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993464;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7286;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.81;SOR=1.677	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.5245:79:0:0:80:3007:-270.739,-21.6693,0.0:79:100:79:0,79:3096,236,0:1:.:1:.:.:.:-0.000492842	1/1:124.5245:226:1:2:226:8571:-771.191,-61.2519,0.0:225:100:226:1,225:9485,656,0:.:1:1:.:.:.:-0.0141286
chr5	176517461	.	T	G	7363.8150000000005	REJECT	NS=2;DP=197;DPB=226.0;AC=4;AN=4;AF=1.0;RO=1;AO=225;PRO=0.0;PAO=0.0;QR=39;QA=8636;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=161;SAR=64;SRP=5.18177;SAP=93.8165;AB=0.0;ABP=0.0;RUN=1;RPP=17.6895;RPPR=5.18177;RPL=93.0;RPR=132.0;EPP=5.79944;EPPR=5.18177;DPRA=0.0;ODDS=39.879;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995556;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.015;Dels=0.0;FS=2.4775;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.912;QD=26.125;ReadPosRankSum=0.195;SOR=2.147	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.4935:56:0:0:57:2186:-196.905,-15.4442,0.0:56:100:56:0,55:2268,165,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:169:1:39:168:6450:-576.789,-42.2611,0.0:168:99:169:1,168:7159,456,0:.:1:1:.:.:.:-0.0141286
chr5	176517797	.	C	T	15758.3	REJECT	NS=2;DP=417;DPB=476.0;AC=4;AN=4;AF=1.0;RO=0;AO=476;PRO=0.0;PAO=0.0;QR=0;QA=18124;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=224;SAR=252;SRP=0.0;SAP=6.58684;AB=0.0;ABP=0.0;RUN=1;RPP=3.30226;RPPR=0.0;RPL=242.0;RPR=234.0;EPP=15.3457;EPPR=0.0;DPRA=0.0;ODDS=77.2787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991597;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.335;SOR=0.8455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.6265:114:0:0:117:4418:-397.606,-31.6867,0.0:114:100:114:0,112:4338,336,0:1:.:1:.:.:.:-0.000492842	1/1:126.6265:358:0:0:359:13706:-1232.71,-97.1882,0.0:358:100:358:0,358:15301,1060,0:.:1:1:.:.:.:-0.0141286
chr5	176518784	.	C	T	13170.45	REJECT	NS=2;DP=352;DPB=408.0;AC=4;AN=4;AF=1.0;RO=0;AO=408;PRO=0.0;PAO=0.0;QR=0;QA=15441;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=251;SRP=0.0;SAP=50.0376;AB=0.0;ABP=0.0;RUN=1;RPP=8.46027;RPPR=0.0;RPL=220.0;RPR=188.0;EPP=3.54252;EPPR=0.0;DPRA=0.0;ODDS=73.5812;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997549;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9653;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.44;SOR=1.357	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:111:4218:-379.653,-30.0809,0.0:109:100:109:0,108:4326,325,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:297:0:0:297:11223:-1009.5,-80.4197,0.0:297:100:297:0,297:12573,882,0:.:1:1:.:.:.:-0.0141286
chr5	176519287	.	G	A	4953.8	REJECT	NS=2;DP=136;DPB=160.0;AC=4;AN=4;AF=1.0;RO=0;AO=160;PRO=0.0;PAO=0.0;QR=0;QA=6040;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=129;SAR=31;SRP=0.0;SAP=133.353;AB=0.0;ABP=0.0;RUN=1;RPP=85.5805;RPPR=0.0;RPL=41.0;RPR=119.0;EPP=24.725;EPPR=0.0;DPRA=0.0;ODDS=33.6741;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99375;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9638;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.02;SOR=2.971	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.2525:46:0:0:47:1769:-159.436,-12.7494,0.0:46:100:46:0,45:1941,135,0:1:.:1:.:.:.:-0.000492842	1/1:124.1415:113:0:0:113:4271:-384.394,-30.6066,0.0:113:100:113:0,113:4780,334,0:.:1:1:.:.:.:-0.0141286
chr5	176520243	.	G	A	3493.7799999999997	REJECT	NS=2;DP=246;DPB=285.0;AC=2;AN=4;AF=0.5;RO=151;AO=134;PRO=0.0;PAO=0.0;QR=5690;QA=5020;PQR=0.0;PQA=0.0;SRF=54;SRR=97;SAF=38;SAR=96;SRP=29.6001;SAP=57.524;AB=0.470175;ABP=5.21225;RUN=1;RPP=10.8535;RPPR=3.36982;RPL=78.0;RPR=56.0;EPP=3.59368;EPPR=3.36982;DPRA=0.0;ODDS=242.588;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985075;PAIREDR=0.993377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.038;Dels=0.0;FS=3.6925;HaplotypeScore=8.8566;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.801;QD=16.705;ReadPosRankSum=0.362;SOR=1.0575;ClippingRankSum=0.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.8325:75:40:1426:38:1417:-107.235,0.0,-107.274:36:49:75:37,35:1266,0,1327:1:.:1:.:.:.:-0.000492842	0/1:123.8325:207:111:4264:96:3603:-268.063,0.0,-327.555:96:46:207:111,96:3385,0,4179:.:1:1:.:.:.:-0.0141286
chr5	176522728	.	C	T	7940.265	REJECT	NS=2;DP=212;DPB=248.0;AC=4;AN=4;AF=1.0;RO=0;AO=248;PRO=0.0;PAO=0.0;QR=0;QA=9433;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=73;SAR=175;SRP=0.0;SAP=94.1071;AB=0.0;ABP=0.0;RUN=1;RPP=6.51267;RPPR=0.0;RPL=134.0;RPR=114.0;EPP=18.4558;EPPR=0.0;DPRA=0.0;ODDS=48.6122;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.66;SOR=1.896	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:70:0:0:71:2645:-238.198,-19.237,0.0:70:100:70:0,69:2820,207,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:177:0:0:177:6788:-610.706,-47.9409,0.0:177:100:177:0,177:7571,524,0:.:1:1:.:.:.:-0.0141286
chr5	176523597	.	A	G	14461.75	REJECT	NS=2;DP=385;DPB=438.0;AC=4;AN=4;AF=1.0;RO=0;AO=438;PRO=0.0;PAO=0.0;QR=0;QA=16682;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=195;SRP=0.0;SAP=14.4328;AB=0.0;ABP=0.0;RUN=1;RPP=31.646;RPPR=0.0;RPL=181.0;RPR=257.0;EPP=3.98201;EPPR=0.0;DPRA=0.0;ODDS=69.8518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993151;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8967;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.33;SOR=0.994	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:105:4045:-364.088,-28.4612,0.0:103:100:103:0,101:4209,304,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:333:0:0:333:12637:-1136.55,-90.1148,0.0:333:100:333:0,333:14029,972,0:.:1:1:.:.:.:-0.0141286
chr5	176637192	.	T	C	2685.99	PASS	SOMATIC;NS=2;DP=385;DPB=385.0;AC=1;AN=3;AF=0.25;RO=283;AO=102;PRO=0.0;PAO=0.0;QR=10916;QA=3935;PQR=0.0;PQA=0.0;SRF=137;SRR=146;SAF=44;SAR=58;SRP=3.63182;SAP=7.18293;AB=0.346939;ABP=62.8366;RUN=1;RPP=3.7767;RPPR=15.9087;RPL=54.0;RPR=48.0;EPP=3.09546;EPPR=6.39411;DPRA=3.23077;ODDS=57.7601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989399;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.143;Dels=0.0;FS=2.687;HaplotypeScore=5.9237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.842;QD=12.04;ReadPosRankSum=-0.998;SOR=0.886	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.4:88:91:3496:0:0:0.0,-24.6589,-314.703:0:0:88:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.000492842	0/1:120.2:293:192:7420:102:3935:-274.283,0.0,-587.775:102:35:293:185,99:38.0:0.348:2:3557,0,7409:.:1:1:.:.:1:-0.0141286
chr5	176639217	.	T	TA	191.802	REJECT	NS=2;DP=140;DPB=165.667;AC=2;AN=3;AF=0.25;RO=94;AO=17;PRO=18.8333;PAO=11.8333;QR=3527;QA=527;PQR=682.333;PQA=411.333;SRF=22;SRR=72;SAF=4;SAR=13;SRP=60.7622;SAP=13.3567;AB=0.121429;ABP=177.286;RUN=1;RPP=6.20364;RPPR=60.7622;RPL=11.0;RPR=6.0;EPP=4.1599;EPPR=10.4949;DPRA=0.0;ODDS=13.1792;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.696;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.696;QD=1.78;ReadPosRankSum=0.817;SOR=0.374;ClippingRankSum=0.635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:89.06045:35:18:662:8:263:-15.8416,0.0,-61.5591:9:26:34:24,10:114,0,433:1:.:1:.:.:.:-0.000492842	./1:57.1637:104:76:2865:9:264:-10.4322,-6.92169,-259.242:9:10:94:.:.:.:.:1:.:.:.:-0.0141286
chr5	176639217	.	T	TAA	191.802	REJECT	NS=2;DP=140;DPB=165.667;AC=2;AN=2;AF=0.0;RO=94;AO=5;PRO=18.8333;PAO=9.83333;QR=3527;QA=166;PQR=682.333;PQA=356.333;SRF=22;SRR=72;SAF=0;SAR=5;SRP=60.7622;SAP=13.8677;AB=0.0357143;ABP=265.138;RUN=1;RPP=13.8677;RPPR=60.7622;RPL=5.0;RPR=0.0;EPP=13.8677;EPPR=10.4949;DPRA=0.0;ODDS=13.1792;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1209:36:18:662:3:103:-15.8416,-13.067,-75.9733:3:9:34:.:.:1:.:.:.:-0.000492842	./1:57.1637:104:76:2865:2:63:-10.4322,-27.5295,-282.25:2:2:94:.:.:1:.:.:.:-0.0141286
chr5	176639217	.	TA	T	191.802	REJECT	NS=2;DP=140;DPB=165.667;AC=2;AN=3;AF=0.25;RO=94;AO=12;PRO=18.8333;PAO=13.5;QR=3527;QA=430;PQR=682.333;PQA=482.0;SRF=22;SRR=72;SAF=2;SAR=10;SRP=60.7622;SAP=14.5915;AB=0.0857143;ABP=211.72;RUN=1;RPP=14.5915;RPPR=60.7622;RPL=10.0;RPR=2.0;EPP=5.9056;EPPR=10.4949;DPRA=0.0;ODDS=13.1792;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.1209:36:18:662:5:163:-15.8416,-8.20123,-70.5741:5:15:34:.:.:1:.:.:.:-0.000492842	0/1:57.1637:104:76:2865:7:267:-10.4322,0.0,-261.459:7:7:94:.:.:1:.:.:.:-0.0141286
chr5	176721198	.	T	C	12158.5	REJECT	NS=2;DP=319;DPB=371.0;AC=4;AN=4;AF=1.0;RO=0;AO=371;PRO=0.0;PAO=0.0;QR=0;QA=14309;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=173;SAR=198;SRP=0.0;SAP=6.66844;AB=0.0;ABP=0.0;RUN=1;RPP=5.12324;RPPR=0.0;RPL=176.0;RPR=195.0;EPP=6.66844;EPPR=0.0;DPRA=0.0;ODDS=69.2287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994609;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.18;SOR=0.9445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:104:4026:-362.372,-28.1906,0.0:104:100:104:0,104:4343,312,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:267:0:0:267:10283:-924.938,-72.3115,0.0:267:100:267:0,267:11523,795,0:.:1:1:.:.:.:-0.0141286
chr5	176721272	.	G	C	8741.55	REJECT	NS=2;DP=317;DPB=366.0;AC=2;AN=4;AF=0.5;RO=77;AO=289;PRO=0.0;PAO=0.0;QR=2959;QA=10912;PQR=0.0;PQA=0.0;SRF=50;SRR=27;SAF=160;SAR=129;SRP=17.9286;SAP=10.231;AB=0.789617;ABP=269.662;RUN=1;RPP=9.32936;RPPR=3.0385;RPL=130.0;RPR=159.0;EPP=10.231;EPPR=3.26411;DPRA=0.0;ODDS=31.4059;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99308;PAIREDR=0.974026;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5445;Dels=0.0;FS=9.3315;HaplotypeScore=12.7237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.529;QD=23.63;ReadPosRankSum=-1.108;SOR=0.317;ClippingRankSum=-0.913	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:51:1980:47:1754:-131.326,0.0,-151.678:47:48:97:50,47:1586,0,1844:1:.:1:.:.:.:-0.000492842	0/1:115.9285:268:26:979:242:9158:-751.189,0.0,-15.5402:242:90:268:26,242:9418,0,317:.:1:1:.:.:.:-0.0141286
chr5	176939735	.	A	G	10413.885	REJECT	NS=2;DP=280;DPB=326.0;AC=4;AN=4;AF=1.0;RO=0;AO=326;PRO=0.0;PAO=0.0;QR=0;QA=12329;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=144;SAR=182;SRP=0.0;SAP=12.6287;AB=0.0;ABP=0.0;RUN=1;RPP=7.51311;RPPR=0.0;RPL=150.0;RPR=176.0;EPP=4.31585;EPPR=0.0;DPRA=0.0;ODDS=61.1396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993865;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.965;SOR=0.966	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.3805:91:0:0:91:3501:-315.184,-24.6775,0.0:91:100:91:0,91:3820,274,0:1:.:1:.:.:.:-0.000492842	1/1:127.3805:235:0:0:235:8828:-793.721,-63.2162,0.0:235:100:235:0,235:9823,686,0:.:1:1:.:.:.:-0.0141286
chr5	176940384	.	G	A	5110.97	REJECT	NS=2;DP=323;DPB=365.0;AC=2;AN=4;AF=0.5;RO=183;AO=181;PRO=0.0;PAO=0.0;QR=6901;QA=6988;PQR=0.0;PQA=0.0;SRF=101;SRR=82;SAF=94;SAR=87;SRP=7.29391;SAP=3.59816;AB=0.49589;ABP=3.06384;RUN=1;RPP=16.0751;RPPR=22.957;RPL=74.0;RPR=107.0;EPP=19.4343;EPPR=11.6606;DPRA=0.0;ODDS=252.896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.1665;Dels=0.0;FS=2.176;HaplotypeScore=9.8327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3735;QD=18.835;ReadPosRankSum=0.511;SOR=0.515;ClippingRankSum=0.425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6785:83:39:1487:45:1758:-135.494,0.0,-111.106:45:54:83:38,45:1675,0,1384:1:.:1:.:.:.:-0.000492842	0/1:118.6785:281:144:5414:136:5230:-394.617,0.0,-411.174:136:49:280:144,136:5039,0,5214:.:1:1:.:.:.:-0.0141286
chr5	176940871	.	G	C	7588.195	REJECT	NS=2;DP=199;DPB=226.0;AC=4;AN=4;AF=1.0;RO=0;AO=226;PRO=0.0;PAO=0.0;QR=0;QA=8744;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=59;SAR=167;SRP=0.0;SAP=115.081;AB=0.0;ABP=0.0;RUN=1;RPP=50.0909;RPPR=0.0;RPL=148.0;RPR=78.0;EPP=3.16403;EPPR=0.0;DPRA=0.0;ODDS=37.4428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99115;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9662;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.565;SOR=2.064	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.499:52:0:0:53:2055:-185.167,-14.3862,0.0:52:100:52:0,52:2255,157,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:173:0:0:173:6689:-601.823,-46.8801,0.0:173:100:173:0,173:7537,521,0:.:1:1:.:.:.:-0.0141286
chr5	176942371	.	CAG	C	111.982	PASS	SOMATIC;NS=2;DP=207;DPB=248.6;AC=2;AN=3;AF=0.25;RO=147;AO=22;PRO=37.3333;PAO=25.3333;QR=5041;QA=728;PQR=1304.33;PQA=889.333;SRF=32;SRR=115;SAF=3;SAR=19;SRP=104.774;SAP=28.2783;AB=0.12987;ABP=186.26;RUN=1;RPP=17.2236;RPPR=65.4217;RPL=17.0;RPR=5.0;EPP=6.56362;EPPR=7.27939;DPRA=0.0;ODDS=8.65789;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=2;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.5855:53:37:1249:2:78:0.0,-4.08837,-110.928:2:5:42:.:.:1:.:.:.:-0.000492842	0/1:111.979:154:110:3792:20:650:-20.5825,0.0,-335.333:20:15:136:.:.:1:.:.:.:-0.0141286
chr5	176942371	.	CAGAG	C	111.982	REJECT	NS=2;DP=207;DPB=248.6;AC=2;AN=2;AF=0.0;RO=147;AO=9;PRO=37.3333;PAO=20.3333;QR=5041;QA=260;PQR=1304.33;PQA=714.333;SRF=32;SRR=115;SAF=0;SAR=9;SRP=104.774;SAP=22.5536;AB=0.038961;ABP=287.332;RUN=1;RPP=9.04217;RPPR=65.4217;RPL=7.0;RPR=2.0;EPP=9.04217;EPPR=7.27939;DPRA=0.0;ODDS=8.65789;GTI=0;TYPE=del;CIGAR=1M4D15M;NUMALT=2;MEANALT=14.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.5855:53:37:1249:3:91:0.0,-4.8094,-126.697:3:7:42:.:.:1:.:.:.:-0.000492842	./1:111.979:154:110:3792:6:169:-20.5825,-43.2891,-424.689:6:4:136:.:.:1:.:.:.:-0.0141286
chr5	180030322	.	C	T	1653.57	REJECT	NS=2;DP=382;DPB=427.0;AC=2;AN=4;AF=0.5;RO=337;AO=88;PRO=0.0;PAO=0.0;QR=12813;QA=3411;PQR=0.0;PQA=0.0;SRF=157;SRR=180;SAF=49;SAR=39;SRP=6.41893;SAP=5.47788;AB=0.206089;ABP=323.397;RUN=1;RPP=3.40511;RPPR=3.78997;RPL=46.0;RPR=42.0;EPP=7.84676;EPPR=22.502;DPRA=0.0;ODDS=135.643;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=0.994065;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.204;Dels=0.0;FS=4.974;HaplotypeScore=11.7994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.856;QD=10.005;ReadPosRankSum=0.3985;SOR=0.891;ClippingRankSum=-0.037	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:43:1643:44:1725:-131.709,0.0,-124.327:42:50:84:41,41:1476,0,1349:1:.:1:.:.:.:-0.000492842	0/1:129.501:339:294:11170:44:1686:-60.5078,0.0,-913.161:43:13:337:293,43:821,0,11459:.:1:1:.:.:.:-0.0141286
chr5	180041208	.	T	C	7404.120000000001	REJECT	NS=2;DP=206;DPB=236.0;AC=4;AN=4;AF=1.0;RO=0;AO=236;PRO=0.0;PAO=0.0;QR=0;QA=8701;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=84;SAR=152;SRP=0.0;SAP=45.5564;AB=0.0;ABP=0.0;RUN=1;RPP=204.552;RPPR=0.0;RPL=192.0;RPR=44.0;EPP=6.69076;EPPR=0.0;DPRA=0.0;ODDS=41.6734;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.7875;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.285;SOR=1.6785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.4875:60:0:0:60:2197:-197.866,-16.2235,0.0:60:100:60:0,61:2437,182,0:1:.:1:.:.:.:-0.000492842	1/1:121.4875:176:0:0:176:6504:-584.733,-47.2118,0.0:176:100:176:0,176:7312,515,0:.:1:1:.:.:.:-15.6935
chr5	180045911	.	G	A	1839.66	REJECT	NS=1;DP=117;DPB=117.0;AC=1;AN=4;AF=0.5;RO=52;AO=65;PRO=0.0;PAO=0.0;QR=1947;QA=2460;PQR=0.0;PQA=0.0;SRF=15;SRR=37;SAF=27;SAR=38;SRP=23.2217;SAP=7.05258;AB=0.555556;ABP=6.14687;RUN=1;RPP=4.64726;RPPR=3.17734;RPL=36.0;RPR=29.0;EPP=4.64726;EPPR=3.0103;DPRA=0.0;ODDS=314.531;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.2;FS=6.147;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.573;QD=20.44;ReadPosRankSum=0.245;SOR=0.31;ClippingRankSum=1.352	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.706:116:52:1947:65:2460:-189.708,0.0,-143.534:65:56:116:51,65:2399,0,1772:1:.:1:.:.:.:-0.000492842	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-15.6935
chr5	180046426	.	C	CTGGCCGCTTAGCTAAGGCACAG	2294.045	REJECT	NS=2;DP=181;DPB=657.6;AC=2;AN=4;AF=0.5;RO=82;AO=96;PRO=88.5;PAO=90.5;QR=3044;QA=2897;PQR=3209.5;PQA=3299.5;SRF=44;SRR=38;SAF=47;SAR=49;SRP=3.96363;SAP=3.10078;AB=0.530387;ABP=4.46195;RUN=1;RPP=3.8246;RPPR=5.65844;RPL=45.0;RPR=51.0;EPP=12.0581;EPPR=3.11623;DPRA=0.0;ODDS=61.1766;GTI=0;TYPE=ins;CIGAR=1M22I4M;NUMALT=1;MEANALT=2.5;LEN=22;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=180046426;HOMLEN=0;SVLEN=22;SVTYPE=INS;BaseQRankSum=2.21;FS=4.9045;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.245;QD=24.465;ReadPosRankSum=-1.3155;SOR=1.016;ClippingRankSum=1.584	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:47:1785:17:496:-27.0524,0.0,-145.222:49:51:97:47,53:2475,0,1814:1:.:1:1:.:.:-0.000492842	0/1:129.501:185:35:1259:79:2401:-194.547,0.0,-81.7983:216:86:251:36,259:44683,0,6422:.:1:1:1:.:.:-0.196235
chr5	180046492	.	CAG	C	9862.83	PASS	SOMATIC;NS=2;DP=393;DPB=278.5;AC=2;AN=3;AF=0.375;RO=84;AO=120;PRO=16.5;PAO=8.5;QR=3158;QA=4524;PQR=560.5;PQA=278.5;SRF=42;SRR=42;SAF=52;SAR=68;SRP=3.0103;SAP=7.64277;AB=0.377358;ABP=44.5551;RUN=1;RPP=8.87328;RPPR=3.42391;RPL=51.0;RPR=69.0;EPP=8.87328;EPPR=9.62812;DPRA=0.0;ODDS=394.638;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=2;MEANALT=3.0;LEN=2;MQM=60.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;END=180046494;HOMLEN=2;HOMSEQ=AG;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=-0.6085;FS=0.3985;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.5195;QD=25.955;RPA=2,1;RU=AG;ReadPosRankSum=1.219;SOR=0.64;STR;ClippingRankSum=-1.148	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:128:60:2253:0:0:-183.042,-199.837,-392.368:35:27:127:60,71:2786,0,2317:1:.:1:.:.:.:-0.000492842	0/1:129.501:330:24:905:120:4524:-814.456,-448.132,-507.715:154:60:317:62,224:13738,0,249:.:1:1:1:.:.:-0.196235
chr5	180046493	.	AGA	C	9862.83	REJECT	NS=2;DP=443;DPB=278.5;AC=2;AN=3;AF=0.5;RO=84;AO=237;PRO=16.5;PAO=11.0;QR=3158;QA=8480;PQR=560.5;PQA=408.0;SRF=42;SRR=42;SAF=125;SAR=112;SRP=3.0103;SAP=4.55873;AB=0.534989;ABP=7.72088;RUN=1;RPP=14.2342;RPPR=3.42391;RPL=101.0;RPR=136.0;EPP=3.23936;EPPR=9.62812;DPRA=0.0;ODDS=394.638;GTI=0;TYPE=complex;CIGAR=1M2D1X;NUMALT=2;MEANALT=2.5;LEN=3;MQM=60.0422;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:125:60:2253:64:2308:-183.042,0.0,-174.413:64:52:124:.:.:1:.:.:.:-0.000492842	./1:160.002:318:24:905:173:6172:-814.456,-282.364,-344.12:173:55:317:.:.:1:.:.:.:-0.196235
chr5	180046495	.	A	C	4526.77	PASS	DP=227;AC=2;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=-0.188;Dels=0.0;FS=4.1775;HaplotypeScore=131.756;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-0.617;QD=20.24;ReadPosRankSum=1.0675;SOR=0.7555;ClippingRankSum=0.458	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59,71:130:99.0:2786,0,2317:71:55:130:1:.:.:.:.:.:-0.000492842	0/1:148,174:323:99.0:6324,0,5458:174:54:322:.:1:.:.:.:.:-0.196235
chr5	180046495	.	AGG	A	.	PASS	AC=2;AN=4;END=180046497;HOMLEN=3;HOMSEQ=GGG;SVLEN=-2;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59,86:86:59:145:.:.:.:1:.:.:-0.000492842	0/1:115,259:259:69:374:.:.:.:1:.:.:-0.196235
chr5	180047863	.	C	G	10637.2	REJECT	NS=2;DP=288;DPB=332.0;AC=4;AN=4;AF=1.0;RO=0;AO=331;PRO=0.0;PAO=0.0;QR=0;QA=12537;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=139;SRP=0.0;SAP=21.4383;AB=0.0;ABP=0.0;RUN=1;RPP=105.516;RPPR=0.0;RPL=103.0;RPR=228.0;EPP=11.0467;EPPR=0.0;DPRA=0.0;ODDS=59.2181;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.9232;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.47;SOR=1.339	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:88:3339:-300.595,-23.843,0.0:87:100:87:0,87:3594,261,0:1:.:1:.:.:.:-0.000492842	1/1:129.501:244:0:0:243:9198:-827.359,-65.7643,0.0:243:100:243:0,243:10195,707,0:.:1:1:.:.:.:-0.196235
chr5	180048056	.	C	T	5667.59	REJECT	NS=2;DP=408;DPB=479.0;AC=2;AN=4;AF=0.5;RO=264;AO=214;PRO=0.0;PAO=0.0;QR=9970;QA=8198;PQR=0.0;PQA=0.0;SRF=134;SRR=130;SAF=96;SAR=118;SRP=3.1419;SAP=7.92148;AB=0.446764;ABP=14.8015;RUN=1;RPP=3.37559;RPPR=5.67529;RPL=110.0;RPR=104.0;EPP=6.29795;EPPR=20.415;DPRA=0.0;ODDS=426.903;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995327;PAIREDR=0.992424;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.718;Dels=0.0;FS=3.535;HaplotypeScore=4.8601;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.711;QD=16.255;ReadPosRankSum=0.836;SOR=0.874;ClippingRankSum=-0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.4465:138:75:2832:64:2488:-186.215,0.0,-217.182:64:46:138:73,64:2343,0,2430:1:.:1:.:.:.:-0.000492842	0/1:121.4465:338:189:7138:150:5710:-422.172,0.0,-550.236:150:44:338:188,150:5349,0,6937:.:1:1:.:.:.:-0.196235
chr5	180052946	.	G	A	4820.66	REJECT	NS=2;DP=290;DPB=335.0;AC=2;AN=4;AF=0.5;RO=159;AO=176;PRO=0.0;PAO=0.0;QR=6050;QA=6682;PQR=0.0;PQA=0.0;SRF=96;SRR=63;SAF=110;SAR=66;SRP=17.8828;SAP=26.8965;AB=0.525373;ABP=4.8836;RUN=1;RPP=4.78696;RPPR=3.6795;RPL=82.0;RPR=94.0;EPP=6.16881;EPPR=33.1787;DPRA=0.0;ODDS=264.03;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=0.993711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5965;Dels=0.0;FS=1.547;HaplotypeScore=8.7398;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.17;QD=18.95;ReadPosRankSum=-0.557;SOR=0.735;ClippingRankSum=-0.7	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.328:87:42:1571:48:1880:-144.879,0.0,-117.021:46:53:87:39,45:1664,0,1394:1:.:1:.:.:.:-0.000492842	0/1:124.328:245:117:4479:128:4802:-365.633,0.0,-336.935:128:52:245:117,128:4653,0,4257:.:1:1:.:.:.:-0.196235
chr5	180055862	.	T	C	2903.81	REJECT	NS=2;DP=193;DPB=220.667;AC=2;AN=3;AF=0.5;RO=72;AO=113;PRO=3.5;PAO=3.5;QR=2457;QA=3813;PQR=17.5;PQA=17.5;SRF=61;SRR=11;SAF=84;SAR=29;SRP=78.4086;SAP=61.1404;AB=0.520737;ABP=3.82085;RUN=1;RPP=19.1714;RPPR=15.074;RPL=42.0;RPR=71.0;EPP=3.18325;EPPR=6.02623;DPRA=0.0;ODDS=96.193;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=1.898;Dels=0.0;FS=5.5775;HaplotypeScore=44.3184;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.356;QD=21.1;ReadPosRankSum=0.505;SOR=1.211	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:123.027:48:0:0:33:1118:-144.288,-52.4603,-43.5658:32:69:47:0,32:1805,669,581:1:.:1:.:.:.:-0.000492842	0/1:123.027:169:72:2457:80:2695:-201.384,0.0,-180.46:80:50:160:72,80:2526,0,2190:.:1:1:.:.:.:-0.196235
chr5	180055862	.	T	G	1776.77	PASS	DP=48;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;ALERT;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;QD=27.42;SOR=2.208	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0,16:48:99.0:1805,1175,1250:16:33:48:1:.:.:.:.:.:-0.000492842	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.196235
chr5	180055862	.	TGG	GGA	3309.85	REJECT	NS=2;DP=217;DPB=220.667;AC=2;AN=2;AF=0.25;RO=72;AO=29;PRO=3.5;PAO=2.0;QR=2457;QA=976;PQR=17.5;PQA=65.0;SRF=61;SRR=11;SAF=19;SAR=10;SRP=78.4086;SAP=9.07545;AB=0.133641;ABP=255.992;RUN=1;RPP=4.88226;RPPR=15.074;RPL=12.0;RPR=17.0;EPP=3.08518;EPPR=6.02623;DPRA=0.0;ODDS=96.193;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=2;MEANALT=3.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:147.054:48:0:0:13:440:-144.288,-91.8279,-87.5025:13:28:46:.:.:1:.:.:.:-0.000492842	./1:147.054:169:72:2457:16:536:-201.384,-105.291,-305.401:16:10:168:.:.:1:.:.:.:-0.196235
chr5	180055864	.	G	A	276.77	PASS	DP=113;AC=2;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=-0.6855;Dels=0.0;FS=3.9525;HaplotypeScore=47.2732;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.242;QD=4.845;ReadPosRankSum=-1.005;SOR=0.2485;ClippingRankSum=-0.073	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:34,16:50:99.0:485,0,1343:16:32:50:1:.:.:.:.:.:-0.000492842	0/1:159,17:176:99.0:125,0,5785:17:10:176:.:1:.:.:.:.:-0.196235
chr5	180057231	.	C	A	4369.07	REJECT	NS=2;DP=307;DPB=348.0;AC=2;AN=4;AF=0.5;RO=183;AO=165;PRO=0.0;PAO=0.0;QR=6864;QA=5988;PQR=0.0;PQA=0.0;SRF=98;SRR=85;SAF=99;SAR=66;SRP=5.01565;SAP=17.342;AB=0.474138;ABP=5.03202;RUN=1;RPP=4.60271;RPPR=10.4265;RPL=77.0;RPR=88.0;EPP=4.0763;EPPR=3.59173;DPRA=0.0;ODDS=150.519;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5565;Dels=0.0;FS=5.415;HaplotypeScore=7.7728;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5525;QD=13.86;ReadPosRankSum=0.7005;SOR=0.8435;ClippingRankSum=0.13	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.9815:80:54:2036:27:976:-65.92,0.0,-161.391:26:33:80:53,26:804,0,1956:1:.:1:.:.:.:-0.000492842	0/1:122.9815:267:129:4828:138:5012:-378.609,0.0,-362.094:138:52:267:129,138:4807,0,4596:.:1:1:.:.:.:-0.196235
chr5	180057356	.	C	G	3653.71	REJECT	NS=2;DP=248;DPB=286.0;AC=2;AN=4;AF=0.5;RO=154;AO=132;PRO=0.0;PAO=0.0;QR=5777;QA=5026;PQR=0.0;PQA=0.0;SRF=71;SRR=83;SAF=61;SAR=71;SRP=5.04077;SAP=4.65535;AB=0.461538;ABP=6.6851;RUN=1;RPP=40.9124;RPPR=38.2615;RPL=90.0;RPR=42.0;EPP=3.0761;EPPR=6.62002;DPRA=0.0;ODDS=154.222;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=0.993506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.358;Dels=0.0;FS=8.0905;HaplotypeScore=5.8795;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.269;QD=14.32;ReadPosRankSum=0.0565;SOR=0.7625;ClippingRankSum=-0.363	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:48:1757:26:975:-68.1458,0.0,-138.164:24:34:71:46,23:750,0,1618:1:.:1:.:.:.:-0.000492842	0/1:129.501:211:106:4020:106:4051:-307.021,0.0,-304.232:106:50:211:105,106:3896,0,3799:.:1:1:.:.:.:-0.196235
chr6	397261	.	G	A	4439.6	REJECT	NS=2;DP=282;DPB=328.0;AC=2;AN=4;AF=0.5;RO=163;AO=164;PRO=0.0;PAO=0.0;QR=6212;QA=6137;PQR=0.0;PQA=0.0;SRF=48;SRR=115;SAF=42;SAR=122;SRP=62.8124;SAP=87.7507;AB=0.5;ABP=3.0103;RUN=1;RPP=50.6768;RPPR=27.6425;RPL=112.0;RPR=52.0;EPP=3.8577;EPPR=12.722;DPRA=0.0;ODDS=234.959;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2575;Dels=0.0;FS=2.0495;HaplotypeScore=8.6986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.521;QD=17.735;ReadPosRankSum=-0.0945;SOR=0.857;ClippingRankSum=-0.408	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:51:1976:41:1469:-107.314,0.0,-152.971:41:45:92:51,41:1525,0,2833:1:.:1:.:.:.:-1.27739e-05	0/1:129.501:236:112:4236:123:4668:-356.286,0.0,-317.425:123:52:235:112,123:4559,0,4030:.:1:1:.:.:.:4.66804e-05
chr6	397269	.	T	G	3822.915	REJECT	NS=2;DP=244;DPB=285.0;AC=2;AN=4;AF=0.5;RO=143;AO=142;PRO=0.0;PAO=0.0;QR=5223;QA=5358;PQR=0.0;PQA=0.0;SRF=42;SRR=101;SAF=34;SAR=108;SRP=55.8697;SAP=86.7496;AB=0.498246;ABP=3.01792;RUN=1;RPP=73.7208;RPPR=36.5542;RPL=105.0;RPR=37.0;EPP=5.21236;EPPR=8.49213;DPRA=0.0;ODDS=217.074;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8765;Dels=0.0;FS=2.8035;HaplotypeScore=9.6763;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4315;QD=17.825;ReadPosRankSum=-0.4615;SOR=0.9415;ClippingRankSum=-1.341	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:46:1670:36:1358:-100.077,0.0,-128.146:36:44:82:46,36:1410,0,2701:1:.:1:.:.:.:-1.27739e-05	0/1:129.501:203:97:3553:106:4000:-304.92,0.0,-264.694:106:52:203:97,106:3845,0,3292:.:1:1:.:.:.:4.66804e-05
chr6	397290	.	T	C	2366.95	REJECT	NS=2;DP=168;DPB=196.0;AC=2;AN=4;AF=0.5;RO=100;AO=94;PRO=0.0;PAO=0.0;QR=3688;QA=3526;PQR=0.0;PQA=0.0;SRF=30;SRR=70;SAF=18;SAR=76;SRP=37.7539;SAP=80.7213;AB=0.479592;ABP=3.71935;RUN=1;RPP=103.637;RPPR=128.435;RPL=80.0;RPR=14.0;EPP=36.3678;EPPR=20.0346;DPRA=0.0;ODDS=146.61;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4745;Dels=0.0;FS=5.458;HaplotypeScore=6.746;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7895;QD=16.445;ReadPosRankSum=-0.4115;SOR=1.2485;ClippingRankSum=1.141	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.5525:55:30:1127:25:932:-69.0666,0.0,-86.6197:25:45:55:30,25:880,0,1050:1:.:1:.:.:.:-1.27739e-05	0/1:126.5525:141:70:2561:69:2594:-195.808,0.0,-192.824:69:50:139:70,69:2482,0,2414:.:1:1:.:.:.:4.66804e-05
chr6	407629	.	C	T	155.018	REJECT	NS=2;DP=44;DPB=105.269;AC=2;AN=2;AF=0.0;RO=14;AO=3;PRO=41.0;PAO=0.0;QR=482;QA=42;PQR=1482.6;PQA=0.0;SRF=1;SRR=13;SAF=0;SAR=3;SRP=25.3454;SAP=9.52472;AB=0.0681818;ABP=74.2741;RUN=1;RPP=9.52472;RPPR=25.3454;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=18.5208;DPRA=0.0;ODDS=16.2903;GTI=0;TYPE=snp;CIGAR=1X25M;NUMALT=5;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:70.3975:9:3:99:2:28:-8.19433,-29.8464,-278.862:2:29:7:.:.:1:.:.:.:-1.27739e-05	./1:102.16:35:11:383:1:14:-13.5356,-105.788,-1123.49:1:4:26:.:.:1:.:.:.:4.66804e-05
chr6	407629	.	C	CT	155.018	REJECT	NS=2;DP=44;DPB=105.269;AC=2;AN=2;AF=0.0;RO=14;AO=2;PRO=41.0;PAO=26.0;QR=482;QA=54;PQR=1482.6;PQA=942.6;SRF=1;SRR=13;SAF=1;SAR=1;SRP=25.3454;SAP=3.0103;AB=0.0571429;ABP=62.6327;RUN=1;RPP=7.35324;RPPR=25.3454;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=18.5208;DPRA=0.0;ODDS=16.2903;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=5;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:70.3975:9:3:99:0:0:-8.19433,-9.82462,-26.9931:0:0:7:.:.:1:.:.:.:-1.27739e-05	./1:102.16:35:11:383:2:54:-13.5356,-13.0215,-81.7988:2:8:26:.:.:1:.:.:.:4.66804e-05
chr6	407629	.	CT	C	155.018	REJECT	NS=2;DP=44;DPB=105.269;AC=2;AN=4;AF=0.5;RO=14;AO=9;PRO=41.0;PAO=22.5;QR=482;QA=261;PQR=1482.6;PQA=806.1;SRF=1;SRR=13;SAF=4;SAR=5;SRP=25.3454;SAP=3.25157;AB=0.204545;ABP=36.372;RUN=1;RPP=22.5536;RPPR=25.3454;RPL=9.0;RPR=0.0;EPP=3.25157;EPPR=18.5208;DPRA=0.0;ODDS=16.2903;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=5;MEANALT=9.0;LEN=1;MQM=59.6667;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:70.3975:9:3:99:2:71:-8.19433,0.0,-41.1614:2:29:7:.:.:1:.:.:.:-1.27739e-05	0/1:102.16:35:11:383:7:190:-13.5356,0.0,-147.586:7:27:26:.:.:1:.:.:.:4.66804e-05
chr6	407629	.	CTT	C	155.018	REJECT	NS=2;DP=44;DPB=105.269;AC=2;AN=2;AF=0.0;RO=14;AO=3;PRO=41.0;PAO=15.5;QR=482;QA=44;PQR=1482.6;PQA=549.1;SRF=1;SRR=13;SAF=0;SAR=3;SRP=25.3454;SAP=9.52472;AB=0.0857143;ABP=55.1877;RUN=1;RPP=3.73412;RPPR=25.3454;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=18.5208;DPRA=0.0;ODDS=16.2903;GTI=0;TYPE=del;CIGAR=1M2D23M;NUMALT=5;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:70.3975:9:3:99:0:0:-8.19433,-10.1067,-61.2864:0:0:7:.:.:1:.:.:.:-1.27739e-05	./1:102.16:35:11:383:3:44:-13.5356,-28.0046,-221.612:3:12:26:.:.:1:.:.:.:4.66804e-05
chr6	407629	.	CTTTT	C	155.018	REJECT	NS=2;DP=44;DPB=105.269;AC=2;AN=2;AF=0.0;RO=14;AO=2;PRO=41.0;PAO=13.0;QR=482;QA=28;PQR=1482.6;PQA=460.6;SRF=1;SRR=13;SAF=0;SAR=2;SRP=25.3454;SAP=7.35324;AB=0.0571429;ABP=62.6327;RUN=1;RPP=3.0103;RPPR=25.3454;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=18.5208;DPRA=0.0;ODDS=16.2903;GTI=0;TYPE=del;CIGAR=1M4D21M;NUMALT=5;MEANALT=14.0;LEN=4;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:70.3975:9:3:99:0:0:-8.19433,-12.8144,-64.2658:0:0:7:.:.:1:.:.:.:-1.27739e-05	./1:102.16:35:11:383:2:28:-13.5356,-35.6806,-302.074:2:8:26:.:.:1:.:.:.:4.66804e-05
chr6	1504122	.	C	T	1450.5149999999999	REJECT	NS=2;DP=343;DPB=395.0;AC=2;AN=4;AF=0.5;RO=320;AO=75;PRO=0.0;PAO=0.0;QR=12253;QA=2878;PQR=0.0;PQA=0.0;SRF=165;SRR=155;SAF=40;SAR=35;SRP=3.68889;SAP=3.73412;AB=0.189873;ABP=332.992;RUN=1;RPP=4.429;RPPR=4.74748;RPL=34.0;RPR=41.0;EPP=13.4623;EPPR=79.2561;DPRA=0.0;ODDS=36.3312;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986667;PAIREDR=0.996875;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.44;Dels=0.0;FS=5.6995;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.153;QD=7.59;ReadPosRankSum=0.366;SOR=0.9325;ClippingRankSum=-0.376	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9875:103:56:2141:48:1828:-136.355,0.0,-164.529:47:46:103:55,47:1476,0,1882:1:.:1:.:.:.:-1.27739e-05	0/1:115.0655:291:264:10112:27:1050:-15.6367,0.0,-830.739:27:9:291:264,27:315,0,10424:.:1:1:.:.:.:4.66804e-05
chr6	7504298	.	G	A	1543.55	REJECT	NS=2;DP=226;DPB=263.0;AC=2;AN=4;AF=0.5;RO=193;AO=70;PRO=0.0;PAO=0.0;QR=7407;QA=2735;PQR=0.0;PQA=0.0;SRF=118;SRR=75;SAF=41;SAR=29;SRP=23.8137;SAP=7.47733;AB=0.26616;ABP=127.924;RUN=1;RPP=34.7758;RPPR=69.7184;RPL=19.0;RPR=51.0;EPP=4.12706;EPPR=7.97206;DPRA=0.0;ODDS=115.819;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994819;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.05;Dels=0.0;FS=2.4905;HaplotypeScore=4.8771;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1075;QD=11.9;ReadPosRankSum=-0.765;SOR=0.457;ClippingRankSum=-0.483	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.096:71:31:1181:41:1581:-122.843,0.0,-86.8282:41:57:71:30,41:1458,0,1071:1:.:1:.:.:.:-1.27739e-05	0/1:119.096:190:162:6226:29:1154:-52.0581,0.0,-508.384:29:15:190:161,29:723,0,6365:.:1:1:.:.:.:4.66804e-05
chr6	13505827	.	C	T	13616.0	REJECT	NS=2;DP=354;DPB=406.0;AC=4;AN=4;AF=1.0;RO=0;AO=406;PRO=0.0;PAO=0.0;QR=0;QA=15711;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=203;SAR=203;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=7.20349;RPPR=0.0;RPL=217.0;RPR=189.0;EPP=12.445;EPPR=0.0;DPRA=0.0;ODDS=67.3277;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987685;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.49;SOR=0.713	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.4955:100:0:0:101:3881:-349.321,-27.365,0.0:100:100:100:0,99:4122,297,0:1:.:1:.:.:.:-1.27739e-05	1/1:125.4955:304:0:0:305:11830:-1064.06,-82.6341,0.0:304:100:304:0,303:13182,909,0:.:1:1:.:.:.:4.66804e-05
chr6	18006061	.	G	A	4734.05	REJECT	NS=2;DP=339;DPB=387.0;AC=2;AN=4;AF=0.5;RO=209;AO=178;PRO=0.0;PAO=0.0;QR=7919;QA=6661;PQR=0.0;PQA=0.0;SRF=85;SRR=124;SAF=75;SAR=103;SRP=18.8132;SAP=12.5745;AB=0.459948;ABP=8.40251;RUN=1;RPP=4.23023;RPPR=17.234;RPL=94.0;RPR=84.0;EPP=4.767;EPPR=3.27005;DPRA=0.0;ODDS=299.818;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995215;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2665;Dels=0.0;FS=0.845;HaplotypeScore=7.7371;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0285;QD=15.89;ReadPosRankSum=0.6795;SOR=0.604;ClippingRankSum=-0.127	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:48:1791:47:1741:-130.995,0.0,-135.489:46:49:94:47,46:1515,0,1545:1:.:1:.:.:.:-1.27739e-05	0/1:129.501:291:161:6128:131:4920:-363.462,0.0,-472.17:131:45:291:160,131:4624,0,5997:.:1:1:.:.:.:4.66804e-05
chr6	19526053	.	T	C	7439.27	REJECT	NS=2;DP=329;DPB=379.0;AC=3;AN=4;AF=0.75;RO=109;AO=270;PRO=0.0;PAO=0.0;QR=4283;QA=10361;PQR=0.0;PQA=0.0;SRF=75;SRR=34;SAF=183;SAR=87;SRP=36.4988;SAP=77.1299;AB=0.6121;ABP=33.6814;RUN=1;RPP=11.2458;RPPR=3.50834;RPL=119.0;RPR=151.0;EPP=23.1165;EPPR=13.5489;DPRA=0.0;ODDS=62.1412;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.972477;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.95;Dels=0.0;FS=0.512;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.8;QD=27.92;ReadPosRankSum=-0.108;SOR=1.0745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.8265:98:0:0:98:3777:-339.979,-26.5616,0.0:98:100:98:0,98:4067,294,0:1:.:1:.:.:.:-1.27739e-05	0/1:119.8265:280:109:4283:172:6584:-516.099,0.0,-309.127:172:61:280:108,172:6508,0,3924:.:1:1:.:.:.:4.66804e-05
chr6	26031868	.	G	A	5194.6	REJECT	NS=2;DP=223;DPB=258.0;AC=3;AN=4;AF=0.75;RO=65;AO=192;PRO=0.0;PAO=0.0;QR=2534;QA=7266;PQR=0.0;PQA=0.0;SRF=41;SRR=24;SAF=139;SAR=53;SRP=12.665;SAP=86.6572;AB=0.648936;ABP=39.2323;RUN=1;RPP=55.3066;RPPR=23.8898;RPL=62.0;RPR=130.0;EPP=5.22701;EPPR=7.05258;DPRA=0.0;ODDS=44.7055;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994792;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.668;Dels=0.0;FS=3.05;HaplotypeScore=6.7569;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.27;QD=27.445;ReadPosRankSum=-1.026;SOR=1.62	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.8265:70:0:0:70:2674:-240.828,-18.9894,0.0:70:100:70:0,70:2965,211,0:1:.:1:.:.:.:-1.27739e-05	0/1:124.8265:188:65:2534:122:4592:-362.469,0.0,-177.337:122:65:187:65,122:4582,0,2290:.:1:1:.:.:.:4.66804e-05
chr6	35423489	.	A	G	2434.965	REJECT	NS=2;DP=152;DPB=176.0;AC=2;AN=4;AF=0.5;RO=83;AO=92;PRO=0.0;PAO=0.0;QR=3142;QA=3464;PQR=0.0;PQA=0.0;SRF=55;SRR=28;SAF=62;SAR=30;SRP=22.0826;SAP=27.1797;AB=0.522727;ABP=3.79993;RUN=1;RPP=66.8327;RPPR=71.0585;RPL=20.0;RPR=72.0;EPP=3.38795;EPPR=22.0826;DPRA=0.0;ODDS=115.792;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.481;Dels=0.0;FS=0.0;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.3895;QD=19.14;ReadPosRankSum=0.2795;SOR=0.6515;ClippingRankSum=0.241	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.81:46:20:730:26:965:-74.5058,0.0,-53.3238:26:57:45:19,26:943,0,640:1:.:1:.:.:.:-0.000763682	0/1:118.81:129:63:2412:66:2499:-189.925,0.0,-182.131:66:51:129:63,66:2401,0,2330:.:1:1:.:.:.:-0.0443037
chr6	35423662	.	A	C	5168.93	REJECT	NS=2;DP=321;DPB=363.0;AC=2;AN=4;AF=0.5;RO=180;AO=183;PRO=0.0;PAO=0.0;QR=6911;QA=6987;PQR=0.0;PQA=0.0;SRF=101;SRR=79;SAF=87;SAR=96;SRP=8.84915;SAP=3.97144;AB=0.504132;ABP=3.06414;RUN=1;RPP=3.59173;RPPR=3.78238;RPL=88.0;RPR=95.0;EPP=3.30695;EPPR=5.37479;DPRA=0.0;ODDS=268.539;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994444;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3935;Dels=0.0;FS=6.692;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3905;QD=18.1;ReadPosRankSum=-0.312;SOR=0.6035;ClippingRankSum=0.413	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:40:1547:43:1665:-127.402,0.0,-116.773:42:51:82:40,42:1504,0,1448:1:.:1:.:.:.:-0.000763682	0/1:129.501:280:140:5364:140:5322:-402.88,0.0,-406.674:140:50:280:140,140:5125,0,5146:.:1:1:.:.:.:-0.0443037
chr6	35425416	.	A	G	1178.55	REJECT	NS=1;DP=108;DPB=108.0;AC=1;AN=4;AF=0.5;RO=62;AO=45;PRO=0.0;PAO=0.0;QR=2388;QA=1696;PQR=0.0;PQA=0.0;SRF=30;SRR=32;SAF=17;SAR=28;SRP=3.15039;SAP=8.84915;AB=0.416667;ABP=9.52472;RUN=1;RPP=6.91895;RPPR=19.9618;RPL=27.0;RPR=18.0;EPP=3.44459;EPPR=4.27115;DPRA=0.0;ODDS=271.371;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977778;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.093;FS=4.812;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.141;QD=14.31;ReadPosRankSum=-1.119;SOR=1.146;ClippingRankSum=-0.384	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:62:2388:45:1696:-123.64,0.0,-185.969:45:42:106:61,45:1545,0,2321:1:.:1:.:.:.:-0.000763682	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0443037
chr6	36009383	.	G	A	5213.515	REJECT	NS=2;DP=390;DPB=454.0;AC=2;AN=4;AF=0.5;RO=256;AO=198;PRO=0.0;PAO=0.0;QR=9925;QA=7590;PQR=0.0;PQA=0.0;SRF=123;SRR=133;SAF=86;SAR=112;SRP=3.85853;SAP=10.424;AB=0.436123;ABP=19.1002;RUN=1;RPP=20.5576;RPPR=20.9589;RPL=119.0;RPR=79.0;EPP=28.2783;EPPR=25.9465;DPRA=0.0;ODDS=379.36;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.996094;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.419;Dels=0.0;FS=4.4175;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.522;QD=15.275;ReadPosRankSum=0.227;SOR=0.9025;ClippingRankSum=-0.196	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.616:128:69:2690:59:2248:-167.619,0.0,-207.375:59:46:128:69,59:2000,0,2501:1:.:1:.:.:.:-0.000763682	0/1:117.616:325:187:7235:139:5342:-392.185,0.0,-562.433:138:42:325:187,138:4968,0,7134:.:1:1:.:.:.:-0.0443037
chr6	36547332	.	C	A	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=2;AF=0.0;RO=14;AO=9;PRO=65.5714;PAO=58.6881;QR=506;QA=146;PQR=2284.46;PQA=2048.91;SRF=9;SRR=5;SAF=0;SAR=9;SRP=5.49198;SAP=22.5536;AB=0.12;ABP=97.0785;RUN=1;RPP=9.04217;RPPR=25.3454;RPL=2.0;RPR=7.0;EPP=9.04217;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=snp;CIGAR=1X45M;NUMALT=6;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:22.051:17:6:223:4:74:-3.14433,-8.94711,-128.981:4:33:12:.:.:1:.:.:.:-0.000763682	./1:88.3524:58:8:283:5:72:-14.7455,-42.9606,-426.299:5:17:30:.:.:1:.:.:.:-0.0443037
chr6	36547332	.	C	CA	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=3;AF=0.25;RO=14;AO=4;PRO=65.5714;PAO=63.9048;QR=506;QA=91;PQR=2284.46;PQA=2245.46;SRF=9;SRR=5;SAF=1;SAR=3;SRP=5.49198;SAP=5.18177;AB=0.0689655;ABP=96.6082;RUN=1;RPP=11.6962;RPPR=25.3454;RPL=0.0;RPR=4.0;EPP=5.18177;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=ins;CIGAR=1M1I45M;NUMALT=6;MEANALT=34.0;LEN=1;MQM=60.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:22.051:17:6:223:0:0:-3.14433,-2.52111,-25.4731:0:0:12:.:.:1:.:.:.:-0.000763682	0/1:88.3524:58:8:283:4:91:-14.7455,0.0,-26.1056:4:13:30:.:.:1:.:.:.:-0.0443037
chr6	36547332	.	CA	C	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=3;AF=0.25;RO=14;AO=5;PRO=65.5714;PAO=61.6548;QR=506;QA=180;PQR=2284.46;PQA=2160.04;SRF=9;SRR=5;SAF=5;SAR=0;SRP=5.49198;SAP=13.8677;AB=0.0666667;ABP=125.337;RUN=1;RPP=6.91895;RPPR=25.3454;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=del;CIGAR=1M1D44M;NUMALT=6;MEANALT=21.0;LEN=1;MQM=57.4;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:22.051:17:6:223:1:35:-3.14433,0.0,-22.6811:1:8:12:.:.:1:.:.:.:-0.000763682	./1:88.3524:58:8:283:4:145:-14.7455,-8.22851,-66.0542:4:13:30:.:.:1:.:.:.:-0.0443037
chr6	36547332	.	CAAAA	C	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=2;AF=0.0;RO=14;AO=3;PRO=65.5714;PAO=56.6048;QR=506;QA=88;PQR=2284.46;PQA=1979.74;SRF=9;SRR=5;SAF=2;SAR=1;SRP=5.49198;SAP=3.73412;AB=0.0517241;ABP=104.246;RUN=1;RPP=3.73412;RPPR=25.3454;RPL=1.0;RPR=2.0;EPP=9.52472;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=del;CIGAR=1M4D41M;NUMALT=6;MEANALT=34.0;LEN=4;MQM=56.3333;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:22.051:17:6:223:0:0:-3.14433,-11.277,-101.554:0:0:12:.:.:1:.:.:.:-0.000763682	./1:88.3524:58:8:283:3:88:-14.7455,-26.6048,-238.685:3:10:30:.:.:1:.:.:.:-0.0443037
chr6	36547352	.	G	A	371.77	PASS	SOMATIC;DP=215;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-6.903;Dels=0.03;FS=52.324;HaplotypeScore=51.7851;MLEAC=1;MLEAF=0.5;MQ=54.48;MQRankSum=-6.359;QD=1.73;ReadPosRankSum=4.355;SOR=7.081	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.000763682	0/1:146,60:208:99.0:400,0,3983:60:29:206:.:1:.:.:.:.:-0.0443037
chr6	36547352	.	GAAAAGAAAAAAAAAGT	AAAAAAAAAAAAAAAGG	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=2;AF=0.0;RO=14;AO=3;PRO=65.5714;PAO=33.2881;QR=506;QA=42;PQR=2284.46;PQA=811.193;SRF=9;SRR=5;SAF=3;SAR=0;SRP=5.49198;SAP=9.52472;AB=0.0517241;ABP=104.246;RUN=1;RPP=3.73412;RPPR=25.3454;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=complex;CIGAR=20M1X4M1X10M1X9M;NUMALT=6;MEANALT=34.0;LEN=46;MQM=46.6667;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:22.051:17:6:223:0:0:-3.14433,-66.4705,-913.605:0:0:12:.:.:1:.:.:.:-0.000763682	./1:88.3524:58:8:283:3:42:-14.7455,-183.086,-2668.86:3:10:30:.:.:1:.:.:.:-0.0443037
chr6	36547352	.	GAAAAGAAAAAAAAAGT	AAAAAAAAAAAAAAAAGG	130.78	REJECT	NS=2;DP=75;DPB=237.935;AC=2;AN=2;AF=0.0;RO=14;AO=4;PRO=65.5714;PAO=29.2881;QR=506;QA=56;PQR=2284.46;PQA=714.193;SRF=9;SRR=5;SAF=4;SAR=0;SRP=5.49198;SAP=11.6962;AB=0.0533333;ABP=132.98;RUN=1;RPP=3.0103;RPPR=25.3454;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=3.63072;DPRA=0.0;ODDS=5.5628;GTI=0;TYPE=complex;CIGAR=1M1I19M1X4M1X10M1X9M;NUMALT=6;MEANALT=21.0;LEN=47;MQM=50.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:22.051:17:6:223:1:14:-3.14433,-66.0316,-913.131:1:8:12:.:.:1:.:.:.:-0.000763682	./1:88.3524:58:8:283:3:42:-14.7455,-189.537,-2676.47:3:10:30:.:.:1:.:.:.:-0.0443037
chr6	36645588	.	A	C	5147.34	REJECT	NS=2;DP=230;DPB=268.0;AC=3;AN=4;AF=0.75;RO=75;AO=193;PRO=0.0;PAO=0.0;QR=2851;QA=7317;PQR=0.0;PQA=0.0;SRF=42;SRR=33;SAF=112;SAR=81;SRP=5.35549;SAP=13.8227;AB=0.611399;ABP=23.8137;RUN=1;RPP=92.1307;RPPR=38.4777;RPL=52.0;RPR=141.0;EPP=12.4725;EPPR=9.52472;DPRA=0.0;ODDS=47.752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994819;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.826;Dels=0.0;FS=0.5775;HaplotypeScore=2.9463;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.217;QD=23.425;ReadPosRankSum=-0.192;SOR=0.911	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.4615:75:0:0:75:2831:-254.907,-20.3124,0.0:75:100:75:0,75:3124,225,0:1:.:1:.:.:.:-0.000763682	0/1:121.4615:193:75:2851:118:4486:-351.315,0.0,-204.233:118:61:193:75,118:4429,0,2603:.:1:1:.:.:.:-0.0443037
chr6	36645696	.	A	G	7674.43	REJECT	NS=2;DP=305;DPB=348.0;AC=3;AN=4;AF=0.75;RO=82;AO=266;PRO=0.0;PAO=0.0;QR=3097;QA=10203;PQR=0.0;PQA=0.0;SRF=29;SRR=53;SAF=96;SAR=170;SRP=18.2636;SAP=47.7132;AB=0.688213;ABP=83.9327;RUN=1;RPP=47.7132;RPPR=4.70511;RPL=170.0;RPR=96.0;EPP=4.61033;EPPR=5.65844;DPRA=0.0;ODDS=54.0227;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992481;PAIREDR=0.97561;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.487;Dels=0.0;FS=0.0;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.769;QD=27.1;ReadPosRankSum=-1.724;SOR=0.921	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.821:84:0:0:85:3229:-290.71,-23.0358,0.0:84:100:84:0,84:3394,252,0:1:.:1:.:.:.:-0.000763682	0/1:118.821:262:82:3097:181:6974:-556.091,0.0,-207.363:181:69:262:81,181:7059,0,2590:.:1:1:.:.:.:-0.0443037
chr6	36652339	.	C	G	4494.505	REJECT	NS=2;DP=199;DPB=230.0;AC=3;AN=4;AF=0.75;RO=66;AO=164;PRO=0.0;PAO=0.0;QR=2495;QA=6313;PQR=0.0;PQA=0.0;SRF=18;SRR=48;SAF=41;SAR=123;SRP=32.6213;SAP=92.0407;AB=0.609467;ABP=20.6005;RUN=1;RPP=41.6201;RPPR=11.433;RPL=109.0;RPR=55.0;EPP=10.6369;EPPR=7.74806;DPRA=0.0;ODDS=39.0703;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.028;Dels=0.0;FS=0.333;HaplotypeScore=2.9304;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.149;QD=29.32;ReadPosRankSum=0.582;SOR=1.5	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.945:60:0:0:61:2347:-211.398,-16.5421,0.0:60:100:60:0,59:2512,177,0:1:.:1:.:.:.:-0.000763682	0/1:121.4915:169:66:2495:103:3966:-311.044,0.0,-178.7:103:61:169:66,103:3987,0,2284:.:1:1:.:.:.:-0.0443037
chr6	36754019	.	C	G	1962.925	REJECT	NS=2;DP=311;DPB=358.0;AC=2;AN=4;AF=0.5;RO=261;AO=97;PRO=0.0;PAO=0.0;QR=9814;QA=3591;PQR=0.0;PQA=0.0;SRF=164;SRR=97;SAF=62;SAR=35;SRP=40.358;SAP=19.3299;AB=0.27095;ABP=166.15;RUN=1;RPP=4.10723;RPPR=10.0073;RPL=45.0;RPR=52.0;EPP=11.0918;EPPR=30.0414;DPRA=0.0;ODDS=162.304;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.984674;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7215;Dels=0.0;FS=2.5225;HaplotypeScore=6.8479;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1575;QD=11.46;ReadPosRankSum=-0.2905;SOR=0.8905;ClippingRankSum=1.172	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.454:89:39:1504:52:1982:-153.765,0.0,-110.725:51:57:89:37,50:1773,0,1296:1:.:1:.:.:.:-0.000763682	0/1:119.454:266:222:8310:45:1609:-72.4726,0.0,-675.286:45:17:266:220,45:964,0,8374:.:1:1:.:.:.:-0.0443037
chr6	36754609	.	C	A	1494.505	REJECT	NS=2;DP=323;DPB=361.0;AC=2;AN=4;AF=0.5;RO=284;AO=77;PRO=0.0;PAO=0.0;QR=10884;QA=2993;PQR=0.0;PQA=0.0;SRF=168;SRR=116;SAF=37;SAR=40;SRP=23.6852;SAP=3.26411;AB=0.213296;ABP=260.754;RUN=1;RPP=4.39215;RPPR=30.536;RPL=35.0;RPR=42.0;EPP=3.71532;EPPR=23.6852;DPRA=0.0;ODDS=125.084;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987013;PAIREDR=0.989437;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.57;Dels=0.0;FS=6.332;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7305;QD=10.485;ReadPosRankSum=0.0785;SOR=0.6165;ClippingRankSum=-0.502	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:36:1388:39:1523:-116.793,0.0,-104.646:38:51:74:36,37:1358,0,1339:1:.:1:.:.:.:-0.000763682	0/1:129.501:285:248:9496:38:1470:-54.7912,0.0,-776.673:38:13:285:247,38:811,0,9671:.:1:1:.:.:.:-0.0443037
chr6	36754662	.	T	C	1640.585	REJECT	NS=2;DP=365;DPB=413.0;AC=2;AN=4;AF=0.5;RO=325;AO=88;PRO=0.0;PAO=0.0;QR=12486;QA=3354;PQR=0.0;PQA=0.0;SRF=148;SRR=177;SAF=39;SAR=49;SRP=8.6294;SAP=5.47788;AB=0.213075;ABP=298.336;RUN=1;RPP=6.56362;RPPR=4.51363;RPL=38.0;RPR=50.0;EPP=3.109;EPPR=4.94124;DPRA=0.0;ODDS=135.065;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977273;PAIREDR=0.990769;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4765;Dels=0.0;FS=0.702;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.798;QD=9.005;ReadPosRankSum=0.3825;SOR=0.7235;ClippingRankSum=1.18	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.946:93:48:1846:46:1736:-130.809,0.0,-140.692:45:48:93:48,45:1471,0,1696:1:.:1:.:.:.:-0.000763682	0/1:117.946:318:277:10640:42:1618:-59.1537,0.0,-870.603:41:13:318:276,41:820,0,10860:.:1:1:.:.:.:-0.0443037
chr6	41656640	.	G	A	15004.849999999999	REJECT	NS=2;DP=403;DPB=465.0;AC=4;AN=4;AF=1.0;RO=1;AO=463;PRO=0.0;PAO=0.0;QR=40;QA=17503;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=221;SAR=242;SRP=5.18177;SAP=5.07859;AB=0.0;ABP=0.0;RUN=1;RPP=5.94155;RPPR=5.18177;RPL=244.0;RPR=219.0;EPP=3.24011;EPPR=5.18177;DPRA=0.0;ODDS=74.2064;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9806;MQMR=60.0;PAIRED=0.99568;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.673;Dels=0.0;FS=0.0;HaplotypeScore=7.7458;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.377;QD=32.955;ReadPosRankSum=-1.347;SOR=0.5375;ClippingRankSum=1.377	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.9815:120:1:40:121:4600:-410.381,-29.4493,0.0:118:99:119:1,116:4681,307,0:1:.:1:.:.:.:-0.000763682	1/1:127.9815:341:0:0:342:12903:-1160.52,-92.5767,0.0:341:100:341:0,341:14368,1005,0:.:1:1:.:.:.:-0.0443037
chr6	41656820	.	C	T	2076.26	REJECT	NS=2;DP=426;DPB=482.0;AC=2;AN=4;AF=0.5;RO=375;AO=107;PRO=0.0;PAO=0.0;QR=14229;QA=4037;PQR=0.0;PQA=0.0;SRF=167;SRR=208;SAF=47;SAR=60;SRP=12.7443;SAP=6.44001;AB=0.221992;ABP=326.587;RUN=1;RPP=3.51765;RPPR=4.68378;RPL=56.0;RPR=51.0;EPP=5.46589;EPPR=6.07352;DPRA=0.0;ODDS=168.835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997333;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5445;Dels=0.0;FS=1.875;HaplotypeScore=6.8433;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.467;QD=10.12;ReadPosRankSum=-0.644;SOR=0.5275;ClippingRankSum=-0.292	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.295:109:55:2026:55:2096:-158.885,0.0,-152.544:54:50:109:54,54:1916,0,1872:1:.:1:.:.:.:-0.000763682	0/1:119.295:371:320:12203:52:1941:-73.8667,0.0,-996.821:52:14:371:319,52:1053,0,12490:.:1:1:.:.:.:-0.0443037
chr6	41657873	.	C	CT	46.964	REJECT	NS=2;DP=188;DPB=252.812;AC=2;AN=3;AF=0.25;RO=133;AO=20;PRO=41.5833;PAO=31.5833;QR=4793;QA=559;PQR=1417.83;PQA=1047.83;SRF=23;SRR=110;SAF=4;SAR=16;SRP=126.588;SAP=18.6449;AB=0.106383;ABP=256.01;RUN=1;RPP=13.8677;RPPR=23.0107;RPL=15.0;RPR=5.0;EPP=6.91895;EPPR=5.76954;DPRA=0.0;ODDS=6.94838;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=59.0;MQMR=59.8195;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:38.5608:46:31:1120:3:103:-6.61969,-7.37564,-106.947:3:7:43:.:.:1:.:.:.:-0.000763682	0/1:30.0899:142:102:3673:17:456:-6.54127,0.0,-321.089:17:13:133:.:.:1:.:.:.:-0.0443037
chr6	41657873	.	CT	C	46.964	REJECT	NS=2;DP=188;DPB=252.812;AC=2;AN=3;AF=0.25;RO=133;AO=18;PRO=41.5833;PAO=28.0833;QR=4793;QA=581;PQR=1417.83;PQA=951.833;SRF=23;SRR=110;SAF=0;SAR=18;SRP=126.588;SAP=42.0968;AB=0.0957447;ABP=269.87;RUN=1;RPP=3.49285;RPPR=23.0107;RPL=10.0;RPR=8.0;EPP=3.49285;EPPR=5.76954;DPRA=0.0;ODDS=6.94838;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.8195;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.409;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.494;QD=0.66;ReadPosRankSum=-0.567;SOR=1.371;ClippingRankSum=0.86	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:62.2804:48:31:1120:6:212:-6.61969,0.0,-116.946:8:18:46:39,11:86,0,854:1:.:1:.:.:.:-0.000763682	./1:30.0899:142:102:3673:12:369:-6.54127,-5.76312,-351.862:12:9:133:.:.:.:.:1:.:.:.:-0.0443037
chr6	41657873	.	CTT	C	46.964	REJECT	NS=2;DP=188;DPB=252.812;AC=2;AN=2;AF=0.0;RO=133;AO=5;PRO=41.5833;PAO=25.75;QR=4793;QA=172;PQR=1417.83;PQA=868.5;SRF=23;SRR=110;SAF=2;SAR=3;SRP=126.588;SAP=3.44459;AB=0.0265957;ABP=368.973;RUN=1;RPP=6.91895;RPPR=23.0107;RPL=1.0;RPR=4.0;EPP=3.44459;EPPR=5.76954;DPRA=0.0;ODDS=6.94838;GTI=0;TYPE=del;CIGAR=1M2D13M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=59.8195;PAIRED=1.0;PAIREDR=0.984962;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:38.5608:46:31:1120:3:104:-6.61969,-8.46932,-151.892:3:7:43:.:.:1:.:.:.:-0.000763682	./1:30.0899:142:102:3673:2:68:-6.54127,-36.1842,-421.936:2:2:133:.:.:1:.:.:.:-0.0443037
chr6	41691296	.	A	G	1031.01	REJECT	NS=1;DP=92;DPB=92.0;AC=1;AN=4;AF=0.5;RO=52;AO=40;PRO=0.0;PAO=0.0;QR=2038;QA=1488;PQR=0.0;PQA=0.0;SRF=22;SRR=30;SAF=14;SAR=26;SRP=5.68288;SAP=10.8276;AB=0.434783;ABP=6.40913;RUN=1;RPP=3.87889;RPPR=5.68288;RPL=22.0;RPR=18.0;EPP=6.48466;EPPR=5.68288;DPRA=0.0;ODDS=237.399;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.942;FS=2.89;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.71;QD=14.07;ReadPosRankSum=1.448;SOR=1.114;ClippingRankSum=-0.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:52:2038:40:1488:-109.006,0.0,-158.912:39:43:91:52,39:1309,0,1928:1:.:1:.:.:.:-0.000763682	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0443037
chr6	41814760	.	A	G	8928.61	REJECT	NS=2;DP=349;DPB=400.0;AC=2;AN=4;AF=0.5;RO=107;AO=293;PRO=0.0;PAO=0.0;QR=4102;QA=11210;PQR=0.0;PQA=0.0;SRF=48;SRR=59;SAF=144;SAR=149;SRP=5.46589;SAP=3.19558;AB=0.7325;ABP=190.821;RUN=1;RPP=11.0811;RPPR=3.19295;RPL=163.0;RPR=130.0;EPP=3.90705;EPPR=4.00471;DPRA=0.0;ODDS=197.897;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993174;PAIREDR=0.962617;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.282;Dels=0.0;FS=6.2065;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6475;QD=23.66;ReadPosRankSum=0.571;SOR=0.9585;ClippingRankSum=-1.267	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:59:2240:42:1649:-121.059,0.0,-174.242:42:42:99:56,42:1502,0,1989:1:.:1:.:.:.:-0.000763682	0/1:129.501:298:48:1862:251:9561:-779.012,0.0,-86.4955:250:84:298:48,250:9783,0,1185:.:1:1:.:.:.:-0.0443037
chr6	41903782	.	A	C	7983.87	REJECT	NS=2;DP=318;DPB=365.0;AC=2;AN=4;AF=0.5;RO=99;AO=266;PRO=0.0;PAO=0.0;QR=3813;QA=10152;PQR=0.0;PQA=0.0;SRF=38;SRR=61;SAF=83;SAR=183;SRP=14.6134;SAP=84.6446;AB=0.728767;ABP=168.929;RUN=1;RPP=3.14091;RPPR=3.55865;RPL=135.0;RPR=131.0;EPP=17.4106;EPPR=7.94546;DPRA=0.0;ODDS=248.546;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.214;Dels=0.0;FS=4.4305;HaplotypeScore=3.9315;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.075;QD=24.255;ReadPosRankSum=0.5115;SOR=1.175;ClippingRankSum=1.56	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:47:1779:46:1754:-132.701,0.0,-134.938:46:50:92:45,46:1584,0,1607:1:.:1:.:.:.:-0.000763682	0/1:129.501:272:52:2034:220:8398:-681.708,0.0,-109.703:220:81:272:52,220:8571,0,1478:.:1:1:.:.:.:-0.0443037
chr6	42110589	.	A	G	8309.0	REJECT	NS=2;DP=358;DPB=408.0;AC=3;AN=4;AF=0.75;RO=113;AO=295;PRO=0.0;PAO=0.0;QR=4279;QA=11250;PQR=0.0;PQA=0.0;SRF=68;SRR=45;SAF=179;SAR=116;SRP=13.1759;SAP=32.2258;AB=0.636656;ABP=53.4569;RUN=1;RPP=4.2543;RPPR=23.9371;RPL=141.0;RPR=154.0;EPP=12.0274;EPPR=5.3355;DPRA=0.0;ODDS=61.5223;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989831;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.399;Dels=0.0;FS=0.221;HaplotypeScore=11.7028;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.048;QD=27.39;ReadPosRankSum=-0.521;SOR=0.8855	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.884:96:0:0:97:3702:-333.249,-26.2928,0.0:96:100:96:0,96:3890,288,0:1:.:1:.:.:.:-0.000763682	0/1:120.884:310:113:4279:198:7548:-594.708,0.0,-300.677:197:64:310:112,197:7465,0,3807:.:1:1:.:.:.:-0.0443037
chr6	42111321	.	G	A	8905.735	REJECT	NS=2;DP=393;DPB=455.0;AC=3;AN=4;AF=0.75;RO=132;AO=323;PRO=0.0;PAO=0.0;QR=5050;QA=12364;PQR=0.0;PQA=0.0;SRF=75;SRR=57;SAF=198;SAR=125;SRP=8.34028;SAP=38.8362;AB=0.60479;ABP=34.8672;RUN=1;RPP=8.6642;RPPR=8.34028;RPL=147.0;RPR=176.0;EPP=19.1518;EPPR=7.22164;DPRA=0.0;ODDS=76.4458;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996904;PAIREDR=0.969697;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.825;Dels=0.0;FS=1.234;HaplotypeScore=7.7789;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.271;QD=24.75;ReadPosRankSum=-0.697;SOR=1.064	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:121:4595:-413.529,-32.774,0.0:119:100:119:0,118:4711,354,0:1:.:1:.:.:.:-0.000763682	0/1:129.501:332:132:5050:202:7769:-608.355,0.0,-363.729:202:60:332:129,202:7738,0,4490:.:1:1:.:.:.:-0.0443037
chr6	44216544	.	GT	G	5710.49	REJECT	NS=2;DP=224;DPB=249.059;AC=4;AN=4;AF=0.875;RO=11;AO=199;PRO=25.0;PAO=45.0;QR=420;QA=7237;PQR=888.5;PQA=1656.5;SRF=3;SRR=8;SAF=77;SAR=122;SRP=7.94546;SAP=25.1069;AB=0.849057;ABP=59.0998;RUN=1;RPP=207.816;RPPR=19.0002;RPL=168.0;RPR=31.0;EPP=8.78271;EPPR=4.78696;DPRA=0.0;ODDS=7.0866;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98995;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8065;FS=1.0475;MLEAC=2;MLEAF=1.0;MQ=60.205;MQRankSum=-0.069;QD=20.495;RPA=11,10;RU=T;ReadPosRankSum=-1.2815;SOR=0.46;STR;ClippingRankSum=0.219	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:28.001815105:54:4:152:45:1692:-154.174,0.0,-1.20563:48:92:52:4,52:1301,56,0:1:.:1:.:.:.:-0.000763682	1/1:129.501:199:7:268:154:5545:-529.615,-23.7592,0.0:166:95:174:10,178:4880,334,0:.:1:1:.:.:.:-0.0443037
chr6	44217374	.	T	G	2043.65	PASS	SOMATIC;NS=2;DP=395;DPB=395.0;AC=1;AN=3;AF=0.25;RO=312;AO=83;PRO=0.0;PAO=0.0;QR=11965;QA=3192;PQR=0.0;PQA=0.0;SRF=144;SRR=168;SAF=38;SAR=45;SRP=7.01917;SAP=4.29225;AB=0.291228;ABP=110.906;RUN=1;RPP=6.17594;RPPR=3.45573;RPL=36.0;RPR=47.0;EPP=3.66436;EPPR=4.01252;DPRA=2.59091;ODDS=69.6033;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.059;Dels=0.0;FS=0.479;HaplotypeScore=2.9612;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.142;QD=9.41;ReadPosRankSum=0.986;SOR=0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:108:110:4216:0:0:0.0,-29.8024,-379.446:0:0:108:106,0:.:0.0:0:.:.:.:0:.:.:0:-0.000763682	0/1:129.501:282:202:7749:83:3192:-209.922,0.0,-619.816:82:29:282:196,81:38.0:0.296:2:2683,0,7749:.:1:1:.:.:1:-0.0443037
chr6	44217910	.	A	G	1223.3400000000001	REJECT	NS=2;DP=321;DPB=362.0;AC=2;AN=4;AF=0.5;RO=292;AO=70;PRO=0.0;PAO=0.0;QR=11204;QA=2628;PQR=0.0;PQA=0.0;SRF=141;SRR=151;SAF=34;SAR=36;SRP=3.75395;SAP=3.13438;AB=0.19337;ABP=298.642;RUN=1;RPP=30.9292;RPPR=110.097;RPL=50.0;RPR=20.0;EPP=3.13438;EPPR=3.27802;DPRA=0.0;ODDS=94.9443;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985714;PAIREDR=0.993151;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.505;Dels=0.0;FS=2.173;HaplotypeScore=7.8231;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3675;QD=8.535;ReadPosRankSum=0.331;SOR=0.5535;ClippingRankSum=0.465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7885:78:45:1736:35:1295:-94.9117,0.0,-134.634:35:44:78:42,35:1173,0,1557:1:.:1:.:.:.:-0.000763682	0/1:118.7885:281:247:9468:35:1333:-43.5124,0.0,-775.281:35:12:281:245,35:645,0,9693:.:1:1:.:.:.:-0.0443037
chr6	44218120	.	A	G	14959.8	REJECT	NS=2;DP=405;DPB=464.0;AC=4;AN=4;AF=1.0;RO=1;AO=463;PRO=0.0;PAO=0.0;QR=27;QA=17454;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=236;SAR=227;SRP=5.18177;SAP=3.39019;AB=0.0;ABP=0.0;RUN=1;RPP=4.70339;RPPR=5.18177;RPL=222.0;RPR=241.0;EPP=4.06555;EPPR=5.18177;DPRA=0.0;ODDS=73.6766;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.8963;MQMR=60.0;PAIRED=0.993521;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=12.7201;MLEAC=2;MLEAF=1.0;MQ=56.46;QD=27.625;SOR=0.7675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.527:114:1:27:116:4343:-382.426,-29.2192,0.0:113:99:114:0,111:4561,333,0:1:.:1:.:.:.:-0.000763682	1/1:127.527:347:0:0:347:13111:-1165.66,-93.8525,0.0:347:100:347:0,347:14504,1011,0:.:1:1:.:.:.:-0.0443037
chr6	44228162	.	G	A	1244.275	REJECT	NS=2;DP=234;DPB=271.0;AC=2;AN=4;AF=0.5;RO=202;AO=68;PRO=0.0;PAO=0.0;QR=7777;QA=2573;PQR=0.0;PQA=0.0;SRF=130;SRR=72;SAF=44;SAR=24;SRP=39.1728;SAP=15.7837;AB=0.250923;ABP=149.044;RUN=1;RPP=21.4039;RPPR=52.7177;RPL=22.0;RPR=46.0;EPP=3.52123;EPPR=4.55828;DPRA=0.0;ODDS=174.122;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99505;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.129;Dels=0.0;FS=5.555;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.949;QD=9.225;ReadPosRankSum=0.374;SOR=0.951;ClippingRankSum=0.342	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5415:73:43:1635:30:1135:-82.4118,0.0,-127.444:30:41:73:43,30:1018,0,1620:1:.:1:.:.:.:-0.000763682	0/1:119.5415:198:159:6142:38:1438:-75.9932,0.0,-499.208:38:19:197:159,38:996,0,6298:.:1:1:.:.:.:-0.0443037
chr6	55500196	.	T	C	10143.835	REJECT	NS=2;DP=284;DPB=326.0;AC=4;AN=4;AF=1.0;RO=0;AO=326;PRO=0.0;PAO=0.0;QR=0;QA=11985;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=115;SAR=211;SRP=0.0;SAP=64.3977;AB=0.0;ABP=0.0;RUN=1;RPP=72.3109;RPPR=0.0;RPL=214.0;RPR=112.0;EPP=45.6404;EPPR=0.0;DPRA=0.0;ODDS=56.0266;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9969;MQMR=0.0;PAIRED=0.990798;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=25.1392;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.565;SOR=1.6275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.768:81:0:0:83:3064:-275.831,-22.457,0.0:81:100:81:0,80:3110,239,0:1:.:1:.:.:.:-0.000763682	1/1:127.768:242:0:0:243:8921:-801.951,-65.2534,0.0:242:100:242:0,242:9754,680,0:.:1:1:.:.:.:-0.0443037
chr6	81035908	.	CAAAAT	C	2733.2	REJECT	NS=2;DP=244;DPB=254.667;AC=2;AN=4;AF=0.5;RO=161;AO=119;PRO=37.0;PAO=18.0;QR=6061;QA=4084;PQR=1130.5;PQA=452.5;SRF=103;SRR=58;SAF=84;SAR=35;SRP=30.3223;SAP=46.8229;AB=0.421986;ABP=17.918;RUN=1;RPP=30.765;RPPR=30.3223;RPL=40.0;RPR=79.0;EPP=5.21827;EPPR=10.1451;DPRA=0.0;ODDS=158.725;GTI=0;TYPE=del;CIGAR=1M5D6M;NUMALT=1;MEANALT=2.0;LEN=5;MQM=60.084;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993789;technology.ILLUMINA=1.0;MQ0=0;END=81035913;HOMLEN=4;HOMSEQ=AAAA;SVLEN=-5;SVTYPE=DEL;BaseQRankSum=0.6365;FS=4.4085;MLEAC=1;MLEAF=0.5;MQ=60.025;MQRankSum=0.819;QD=16.855;ReadPosRankSum=0.7005;SOR=1.238;ClippingRankSum=-0.776	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:42:1568:32:1047:-72.5979,0.0,-139.192:35:44:76:32,46:1329,0,2706:1:.:1:1:.:.:3.16097e-05	0/1:129.501:207:119:4493:87:3037:-213.93,0.0,-386.359:87:42:206:91,115:6163,0,8761:.:1:1:1:.:.:-4.31771e-05
chr6	90003708	.	C	A	2118.045	REJECT	NS=2;DP=391;DPB=453.0;AC=2;AN=4;AF=0.5;RO=351;AO=102;PRO=0.0;PAO=0.0;QR=13439;QA=3883;PQR=0.0;PQA=0.0;SRF=158;SRR=193;SAF=50;SAR=52;SRP=10.5888;SAP=3.09546;AB=0.225166;ABP=300.214;RUN=1;RPP=8.46027;RPPR=41.6204;RPL=43.0;RPR=59.0;EPP=30.6008;EPPR=68.6432;DPRA=0.0;ODDS=113.872;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980392;PAIREDR=0.994302;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.816;Dels=0.0;FS=3.087;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.367;QD=9.535;ReadPosRankSum=0.333;SOR=0.736;ClippingRankSum=-1.631	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:60:2248:62:2338:-177.37,0.0,-169.27:62:51:121:59,62:2087,0,1905:1:.:1:.:.:.:3.16097e-05	0/1:129.501:330:291:11191:40:1545:-49.3143,0.0,-916.902:40:12:330:290,40:752,0,11493:.:1:1:.:.:.:-4.31771e-05
chr6	91257746	.	C	G	3319.92	REJECT	NS=2;DP=255;DPB=288.0;AC=2;AN=4;AF=0.5;RO=161;AO=127;PRO=0.0;PAO=0.0;QR=6188;QA=4746;PQR=0.0;PQA=0.0;SRF=114;SRR=47;SAF=84;SAR=43;SRP=63.5553;SAP=31.7524;AB=0.440972;ABP=11.7263;RUN=1;RPP=79.7642;RPPR=30.3223;RPL=30.0;RPR=97.0;EPP=6.8574;EPPR=11.4399;DPRA=0.0;ODDS=146.896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.522;Dels=0.0;FS=2.0635;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.836;QD=13.99;ReadPosRankSum=0.492;SOR=0.5485;ClippingRankSum=-1.301	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6515:65:41:1566:25:945:-67.2191,0.0,-123.143:25:38:65:40,25:819,0,1473:1:.:1:.:.:.:3.16097e-05	0/1:119.6515:222:120:4622:102:3801:-281.819,0.0,-355.681:102:46:222:120,102:3537,0,4506:.:1:1:.:.:.:-4.31771e-05
chr6	91266349	.	T	TA	1931.75	REJECT	NS=2;DP=192;DPB=238.593;AC=2;AN=4;AF=0.5;RO=105;AO=71;PRO=45.5;PAO=42.5;QR=3908;QA=2394;PQR=1656.5;PQA=1505.5;SRF=23;SRR=82;SAF=19;SAR=52;SRP=74.9998;SAP=36.3164;AB=0.369792;ABP=31.2847;RUN=1;RPP=25.3061;RPPR=18.0865;RPL=49.0;RPR=22.0;EPP=3.04088;EPPR=3.03098;DPRA=0.0;ODDS=157.167;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=1;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.014;FS=5.0765;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3475;QD=8.125;RPA=9,10;RU=A;ReadPosRankSum=0.3755;SOR=1.0585;STR;ClippingRankSum=-0.801	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.106:51:22:834:20:681:-71.473,0.0,-77.27:24:48:50:30,28:625,0,685:1:.:1:.:.:.:3.16097e-05	0/1:119.106:180:83:3074:51:1713:-160.547,0.0,-304.676:65:40:161:108,80:1691,0,2729:.:1:1:.:.:.:-4.31771e-05
chr6	91506655	.	A	G	13952.7	REJECT	NS=2;DP=374;DPB=425.0;AC=4;AN=4;AF=1.0;RO=0;AO=425;PRO=0.0;PAO=0.0;QR=0;QA=16085;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=194;SRP=0.0;SAP=10.005;AB=0.0;ABP=0.0;RUN=1;RPP=10.7816;RPPR=0.0;RPL=193.0;RPR=232.0;EPP=82.8438;EPPR=0.0;DPRA=0.0;ODDS=67.3079;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7705;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.34;SOR=0.911	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3842:-345.799,-27.3564,0.0:100:100:100:0,99:3987,300,0:1:.:1:.:.:.:3.16097e-05	1/1:129.501:324:0:0:324:12243:-1101.15,-87.6957,0.0:324:100:324:0,324:13602,948,0:.:1:1:.:.:.:-4.31771e-05
chr6	93005341	.	C	T	5559.48	REJECT	NS=2;DP=358;DPB=424.0;AC=2;AN=4;AF=0.5;RO=215;AO=206;PRO=0.0;PAO=0.0;QR=8194;QA=7907;PQR=0.0;PQA=0.0;SRF=114;SRR=101;SAF=99;SAR=107;SRP=4.71718;SAP=3.68493;AB=0.485849;ABP=3.74778;RUN=1;RPP=12.4973;RPPR=21.685;RPL=118.0;RPR=88.0;EPP=3.68493;EPPR=16.837;DPRA=0.0;ODDS=427.251;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.917;Dels=0.0;FS=6.611;HaplotypeScore=7.9295;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.298;QD=17.31;ReadPosRankSum=0.9315;SOR=0.6755;ClippingRankSum=0.305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.0475:128:64:2441:65:2473:-187.596,0.0,-184.709:63:49:127:64,62:2189,0,2271:1:.:1:.:.:.:3.16097e-05	0/1:125.0475:292:151:5753:141:5434:-409.672,0.0,-438.407:141:48:291:150,141:5246,0,5539:.:1:1:.:.:.:-4.31771e-05
chr6	93967249	.	T	TA	124.782	PASS	SOMATIC;NS=2;DP=245;DPB=287.875;AC=2;AN=2;AF=0.0;RO=191;AO=16;PRO=37.1667;PAO=21.1667;QR=7220;QA=591;PQR=1377.67;PQA=783.667;SRF=40;SRR=151;SAF=3;SAR=13;SRP=143.087;SAP=16.582;AB=0.0653061;ABP=405.123;RUN=1;RPP=11.6962;RPPR=16.9373;RPL=12.0;RPR=4.0;EPP=3.55317;EPPR=15.3911;DPRA=0.0;ODDS=17.0959;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989529;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:74.2465:58:46:1744:1:39:-9.03331,-17.2871,-182.768:1:2:55:.:.:1:.:.:.:-0.0285569	./1:77.3518:187:145:5476:15:552:-10.88,-7.28342,-487.207:15:9:176:.:.:1:.:.:.:-0.0164376
chr6	93967249	.	TA	T	124.782	REJECT	NS=2;DP=245;DPB=287.875;AC=2;AN=4;AF=0.5;RO=191;AO=24;PRO=37.1667;PAO=20.6667;QR=7220;QA=872;PQR=1377.67;PQA=764.667;SRF=40;SRR=151;SAF=4;SAR=20;SRP=143.087;SAP=26.1727;AB=0.0979592;ABP=346.98;RUN=1;RPP=3.37221;RPPR=16.9373;RPL=13.0;RPR=11.0;EPP=6.26751;EPPR=15.3911;DPRA=0.0;ODDS=17.0959;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989529;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:74.2465:58:46:1744:8:290:-9.03331,0.0,-170.335:8:15:55:.:.:1:.:.:.:-0.0285569	0/1:77.3518:187:145:5476:16:582:-10.88,0.0,-491.171:16:9:176:.:.:1:.:.:.:-0.0164376
chr6	93982124	.	A	G	12434.95	REJECT	NS=2;DP=330;DPB=378.0;AC=4;AN=4;AF=1.0;RO=0;AO=378;PRO=0.0;PAO=0.0;QR=0;QA=14422;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=221;SRP=0.0;SAP=26.5403;AB=0.0;ABP=0.0;RUN=1;RPP=58.1818;RPPR=0.0;RPL=238.0;RPR=140.0;EPP=23.691;EPPR=0.0;DPRA=0.0;ODDS=64.2391;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997354;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9229;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.79;SOR=1.156	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:96:3644:-328.033,-26.0236,0.0:94:100:94:0,93:3899,280,0:1:.:1:.:.:.:-0.0285569	1/1:129.501:282:0:0:282:10778:-969.431,-76.3535,0.0:282:100:282:0,282:12065,837,0:.:1:1:.:.:.:-0.0164376
chr6	94067981	.	C	T	2719.36	PASS	SOMATIC;NS=2;DP=373;DPB=373.0;AC=1;AN=3;AF=0.25;RO=271;AO=102;PRO=0.0;PAO=0.0;QR=10379;QA=3955;PQR=0.0;PQA=0.0;SRF=188;SRR=83;SAF=62;SAR=40;SRP=91.3516;SAP=13.3141;AB=0.364286;ABP=47.8047;RUN=1;RPP=15.2727;RPPR=58.2106;RPL=39.0;RPR=63.0;EPP=8.46027;EPPR=3.01831;DPRA=3.01075;ODDS=58.9426;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98893;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.519;Dels=0.0;FS=5.304;HaplotypeScore=4.9093;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.065;QD=12.74;ReadPosRankSum=0.274;SOR=0.41	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.988:90:93:3531:0:0:0.0,-25.1725,-317.817:0:0:90:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.0285569	0/1:119.994:280:178:6848:102:3955:-279.917,0.0,-540.112:102:36:280:175,97:38.0:0.351:2:3595,0,6787:.:1:1:.:.:1:-0.0164376
chr6	94120192	.	G	A	1523.72	PASS	SOMATIC;NS=2;DP=265;DPB=265.0;AC=1;AN=3;AF=0.25;RO=202;AO=63;PRO=0.0;PAO=0.0;QR=7576;QA=2423;PQR=0.0;PQA=0.0;SRF=140;SRR=62;SAF=43;SAR=20;SRP=68.4125;SAP=21.2438;AB=0.304348;ABP=71.8365;RUN=1;RPP=28.1373;RPPR=68.4125;RPL=18.0;RPR=45.0;EPP=5.80219;EPPR=3.3973;DPRA=3.56897;ODDS=37.1989;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980198;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.754;Dels=0.0;FS=2.152;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.119;QD=10.02;ReadPosRankSum=-0.895;SOR=0.441	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.369:56:58:2184:0:0:0.0,-15.7293,-196.761:0:0:56:55,0:.:0.0:0:.:.:.:0:.:.:0:-0.0285569	0/1:129.501:206:144:5392:63:2423:-161.909,0.0,-429.055:63:30:206:141,61:38.0:0.296:2:2092,0,5383:.:1:1:.:.:1:-0.0164376
chr6	96000122	.	C	T	4405.530000000001	REJECT	NS=2;DP=309;DPB=354.0;AC=2;AN=4;AF=0.5;RO=190;AO=164;PRO=0.0;PAO=0.0;QR=7263;QA=6291;PQR=0.0;PQA=0.0;SRF=59;SRR=131;SAF=58;SAR=106;SRP=62.2572;SAP=33.5168;AB=0.463277;ABP=7.15695;RUN=1;RPP=64.2352;RPPR=33.9138;RPL=116.0;RPR=48.0;EPP=4.91696;EPPR=3.42174;DPRA=0.0;ODDS=278.173;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8171;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994737;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9605;Dels=0.0;FS=2.867;HaplotypeScore=3.8882;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1795;QD=17.045;ReadPosRankSum=0.98;SOR=0.454;ClippingRankSum=-0.826	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.918:88:43:1648:46:1760:-134.295,0.0,-124.245:45:51:88:43,45:1612,0,1500:1:.:1:.:.:.:0.000103991	0/1:118.918:265:147:5615:118:4531:-335.789,0.0,-433.305:118:45:265:147,118:4293,0,5486:.:1:1:.:.:.:8.44191e-05
chr6	99283172	.	A	ACAG	320.43	REJECT	NS=2;DP=112;DPB=140.75;AC=2;AN=4;AF=0.5;RO=88;AO=18;PRO=27.0;PAO=28.0;QR=3374;QA=692;PQR=915.0;PQA=951.0;SRF=54;SRR=34;SAF=9;SAR=9;SRP=12.8806;SAP=3.0103;AB=0.160714;ABP=114.996;RUN=1;RPP=3.49285;RPPR=3.89863;RPL=8.0;RPR=10.0;EPP=3.0103;EPPR=3.109;DPRA=0.0;ODDS=17.9466;GTI=0;TYPE=ins;CIGAR=1M3I19M;NUMALT=1;MEANALT=2.5;LEN=3;MQM=60.5556;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965909;technology.ILLUMINA=1.0;BaseQRankSum=0.495;FS=1.86;MLEAC=1;MLEAF=0.5;MQ=60.69;MQRankSum=0.297;QD=10.96;ReadPosRankSum=0.429;SOR=0.273;ClippingRankSum=0.89	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.2695:22:12:448:9:340:-27.9506,0.0,-34.4431:9:44:21:12,10:377,0,460:1:.:1:.:.:.:-1.42999	0/1:77.941:90:76:2926:9:352:-8.63431,0.0,-240.301:9:11:85:.:.:.:.:1:.:.:.:-1.04558
chr6	99283376	.	T	G	7810.375	REJECT	NS=2;DP=210;DPB=243.0;AC=4;AN=4;AF=1.0;RO=0;AO=243;PRO=0.0;PAO=0.0;QR=0;QA=9117;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=156;SAR=87;SRP=0.0;SAP=45.5551;AB=0.0;ABP=0.0;RUN=1;RPP=4.5205;RPPR=0.0;RPL=115.0;RPR=128.0;EPP=3.44817;EPPR=0.0;DPRA=0.0;ODDS=44.7984;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987654;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9635;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.435;SOR=1.564	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.321:63:0:0:65:2381:-214.418,-17.5806,0.0:63:100:63:0,61:2485,182,0:1:.:1:.:.:.:0.434446	1/1:125.321:178:0:0:178:6736:-606.043,-48.1941,0.0:178:100:178:0,178:7528,527,0:.:1:1:.:.:.:0.508366
chr6	106534484	.	A	AT	67.5798	REJECT	NS=2;DP=290;DPB=336.7;AC=2;AN=4;AF=0.5;RO=231;AO=28;PRO=44.5;PAO=26.5;QR=8695;QA=942;PQR=1636.67;PQA=973.667;SRF=61;SRR=170;SAF=4;SAR=24;SRP=114.695;SAP=34.0313;AB=0.0965517;ABP=413.014;RUN=1;RPP=4.25114;RPPR=70.9276;RPL=16.0;RPR=12.0;EPP=4.25114;EPPR=13.2472;DPRA=0.0;ODDS=5.90075;GTI=1;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=59.9134;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:67.5798:81:62:2318:10:325:-12.2614,0.0,-195.043:10:13:78:.:.:1:.:.:.:0.000100839	0/1:0.0118721:209:169:6377:18:617:-0.242735,0.0,-574.737:18:9:197:.:.:1:.:.:.:0.00042622
chr6	106534484	.	AT	A	67.5798	REJECT	NS=2;DP=290;DPB=336.7;AC=2;AN=2;AF=0.0;RO=231;AO=16;PRO=44.5;PAO=25.0;QR=8695;QA=552;PQR=1636.67;PQA=916.667;SRF=61;SRR=170;SAF=3;SAR=13;SRP=114.695;SAP=16.582;AB=0.0551724;ABP=501.431;RUN=1;RPP=11.6962;RPPR=70.9276;RPL=12.0;RPR=4.0;EPP=3.55317;EPPR=13.2472;DPRA=0.0;ODDS=5.90075;GTI=1;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=59.9134;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:67.5798:81:62:2318:6:173:-12.2614,-15.6611,-212.06:6:8:78:.:.:1:.:.:.:0.000100839	./1:0.0118721:209:169:6377:10:379:-0.242735,-18.0019,-612.788:10:5:197:.:.:1:.:.:.:0.00042622
chr6	106555025	.	G	A	3456.1	PASS	SOMATIC;NS=2;DP=416;DPB=416.0;AC=1;AN=3;AF=0.25;RO=285;AO=131;PRO=0.0;PAO=0.0;QR=10829;QA=4848;PQR=0.0;PQA=0.0;SRF=154;SRR=131;SAF=55;SAR=76;SRP=7.04086;SAP=10.3204;AB=0.421222;ABP=19.7746;RUN=1;RPP=3.15949;RPPR=7.04086;RPL=67.0;RPR=64.0;EPP=5.01601;EPPR=9.41805;DPRA=2.9619;ODDS=66.4962;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984733;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.317;Dels=0.0;FS=17.266;HaplotypeScore=5.8704;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.74;QD=14.18;ReadPosRankSum=-0.336;SOR=0.957	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.553:104:105:4000:0:0:0.0,-28.453,-360.034:0:0:104:104,0:.:0.0:0:.:.:.:0:.:.:0:0.000100839	0/1:121.2765:311:180:6829:131:4848:-351.901,0.0,-530.459:131:42:311:177,125:37.0:0.406:2:4438,0,6694:.:1:1:.:.:1:6.87229e-05
chr6	112382313	.	G	T	2057.145	REJECT	NS=2;DP=383;DPB=438.0;AC=2;AN=4;AF=0.5;RO=329;AO=107;PRO=0.0;PAO=0.0;QR=12587;QA=3993;PQR=0.0;PQA=0.0;SRF=169;SRR=160;SAF=54;SAR=53;SRP=3.54492;SAP=3.03059;AB=0.244292;ABP=251.768;RUN=1;RPP=4.00471;RPPR=4.91776;RPL=50.0;RPR=57.0;EPP=4.00471;EPPR=3.54492;DPRA=0.0;ODDS=223.072;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99696;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7615;Dels=0.0;FS=2.0905;HaplotypeScore=4.871;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.373;QD=10.26;ReadPosRankSum=0.2975;SOR=0.9085;ClippingRankSum=0.561	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:56:2163:51:1917:-143.558,0.0,-165.684:51:48:106:54,51:1789,0,1957:1:.:1:.:.:.:0.000100839	0/1:129.501:329:273:10424:56:2076:-97.6351,0.0,-848.502:56:17:328:272,56:1316,0,10642:.:1:1:.:.:.:6.87229e-05
chr6	117631463	.	T	TTAA	2053.05	REJECT	NS=2;DP=169;DPB=204.8;AC=2;AN=4;AF=0.5;RO=83;AO=81;PRO=34.5;PAO=34.5;QR=3161;QA=2910;PQR=1228.5;PQA=1228.5;SRF=9;SRR=74;SAF=18;SAR=63;SRP=113.546;SAP=57.2971;AB=0.47929;ABP=3.6399;RUN=1;RPP=7.5409;RPPR=5.12945;RPL=47.0;RPR=34.0;EPP=9.04217;EPPR=5.12945;DPRA=0.0;ODDS=81.9133;GTI=0;TYPE=ins;CIGAR=1M3I19M;NUMALT=1;MEANALT=3.0;LEN=3;MQM=60.7407;MQMR=60.0;PAIRED=0.987654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.582;FS=5.7575;MLEAC=1;MLEAF=0.5;MQ=60.245;MQRankSum=0.4485;QD=12.87;RPA=6,7;RU=TAA;ReadPosRankSum=0.159;SOR=0.188;STR;ClippingRankSum=0.707	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.422:39:24:917:15:539:-37.987,0.0,-72.0486:15:38:39:24,15:557,0,943:1:.:1:.:.:.:0.000100839	0/1:117.422:154:59:2244:66:2371:-179.499,0.0,-168.093:66:52:126:62,66:3040,0,2770:.:1:1:.:.:.:6.87229e-05
chr6	117642992	.	A	AT	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=26;PRO=36.4405;PAO=34.1071;QR=1716;QA=772;PQR=1274.88;PQA=1158.71;SRF=13;SRR=35;SAF=14;SAR=12;SRP=24.906;SAP=3.34437;AB=0.176871;ABP=136.327;RUN=1;RPP=4.34659;RPPR=11.8771;RPL=15.0;RPR=11.0;EPP=3.0103;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=7;MEANALT=23.0;LEN=1;MQM=59.7692;MQMR=58.3958;PAIRED=0.961538;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.56;FS=6.81;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=0.225;QD=1.57;RPA=20,21;RU=T;ReadPosRankSum=1.332;SOR=0.791;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:6:169:-23.262,-14.2739,-61.6796:6:19:31:.:.:.:.:1:.:.:.:0.000100839	./1:113.4395:162:35:1261:20:603:-170.567,-108.552,-258.73:34:35:92:62,48:379,0,574:.:1:1:.:.:.:0.153097
chr6	117642992	.	A	ATT	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=10;PRO=36.4405;PAO=32.1071;QR=1716;QA=297;PQR=1274.88;PQA=1117.71;SRF=13;SRR=35;SAF=5;SAR=5;SRP=24.906;SAP=3.0103;AB=0.0680272;ABP=241.267;RUN=1;RPP=3.87889;RPPR=11.8771;RPL=6.0;RPR=4.0;EPP=6.48466;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=ins;CIGAR=1M2I25M;NUMALT=7;MEANALT=23.0;LEN=2;MQM=60.0;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:2:66:-23.262,-22.4691,-70.9401:2:6:31:.:.:1:.:.:.:0.000100839	./1:127.879:107:35:1261:8:231:-170.567,-141.915,-295.839:8:11:75:.:.:1:.:.:.:0.153097
chr6	117642992	.	AT	A	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=7;PRO=36.4405;PAO=22.6071;QR=1716;QA=172;PQR=1274.88;PQA=773.046;SRF=13;SRR=35;SAF=2;SAR=5;SRP=24.906;SAP=5.80219;AB=0.047619;ABP=264.311;RUN=1;RPP=5.80219;RPPR=11.8771;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=7;MEANALT=23.0;LEN=1;MQM=59.4286;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:2:71:-23.262,-38.2929,-269.733:2:6:31:.:.:1:.:.:.:0.000100839	./1:127.879:107:35:1261:5:101:-170.567,-235.444,-1047.07:5:7:75:.:.:1:.:.:.:0.153097
chr6	117642992	.	ATT	A	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=5;PRO=36.4405;PAO=21.2143;QR=1716;QA=136;PQR=1274.88;PQA=722.082;SRF=13;SRR=35;SAF=1;SAR=4;SRP=24.906;SAP=6.91895;AB=0.0340136;ABP=280.264;RUN=1;RPP=3.44459;RPPR=11.8771;RPL=3.0;RPR=2.0;EPP=6.91895;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=del;CIGAR=1M2D23M;NUMALT=7;MEANALT=23.0;LEN=2;MQM=60.0;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:2:32:-23.262,-42.8878,-286.594:2:6:31:.:.:1:.:.:.:0.000100839	./1:127.879:107:35:1261:3:104:-170.567,-249.807,-1229.58:3:4:75:.:.:1:.:.:.:0.153097
chr6	117643012	.	TG	T	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=2;PRO=36.4405;PAO=18.8571;QR=1716;QA=28;PQR=1274.88;PQA=664.363;SRF=13;SRR=35;SAF=2;SAR=0;SRP=24.906;SAP=7.35324;AB=0.05;ABP=73.366;RUN=1;RPP=3.0103;RPPR=11.8771;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=del;CIGAR=21M1D4M;NUMALT=7;MEANALT=16.0;LEN=1;MQM=60.0;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:2:28:-23.262,-50.0197,-352.122:2:6:31:.:.:1:.:.:.:0.000100839	./1:127.879:107:35:1261:0:0:-170.567,-237.749,-951.132:0:0:75:.:.:1:.:.:.:0.153097
chr6	117643013	.	G	TT	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=2;AF=0.0;RO=48;AO=4;PRO=36.4405;PAO=19.5238;QR=1716;QA=56;PQR=1274.88;PQA=686.696;SRF=13;SRR=35;SAF=4;SAR=0;SRP=24.906;SAP=11.6962;AB=0.0272109;ABP=288.419;RUN=1;RPP=5.18177;RPPR=11.8771;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=complex;CIGAR=1M1I20M1X4M;NUMALT=7;MEANALT=23.0;LEN=27;MQM=60.0;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.055:40:13:455:2:28:-23.262,-50.0197,-352.122:2:6:31:.:.:1:.:.:.:0.000100839	./1:127.879:107:35:1261:2:28:-170.567,-219.298,-930.546:2:3:75:.:.:1:.:.:.:0.153097
chr6	117643017	.	A	G	1894.72	REJECT	NS=2;DP=147;DPB=257.231;AC=2;AN=4;AF=0.5;RO=48;AO=4;PRO=36.4405;PAO=23.1429;QR=1716;QA=50;PQR=1274.88;PQA=841.506;SRF=13;SRR=35;SAF=4;SAR=0;SRP=24.906;SAP=11.6962;AB=0.0272109;ABP=288.419;RUN=1;RPP=3.0103;RPPR=11.8771;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=14.5915;DPRA=0.0;ODDS=32.8453;GTI=0;TYPE=snp;CIGAR=25M1X;NUMALT=7;MEANALT=23.0;LEN=1;MQM=60.0;MQMR=58.3958;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.055:40:13:455:2:32:-23.262,0.0,-288.485:2:6:31:.:.:1:.:.:.:0.000100839	0/1:127.879:107:35:1261:2:18:-170.567,0.0,-763.731:2:3:75:.:.:1:.:.:.:0.153097
chr6	117647254	.	TTA	T	1725.24	REJECT	SOMATIC;NS=2;DP=202;DPB=292.974;AC=1;AN=3;AF=0.0;RO=28;AO=14;PRO=61.0333;PAO=55.0333;QR=1062;QA=448;PQR=2225.6;PQA=2010.6;SRF=10;SRR=18;SAF=4;SAR=10;SRP=7.97367;SAP=8.59409;AB=0.0693069;ABP=328.473;RUN=1;RPP=3.63072;RPPR=10.7656;RPL=6.0;RPR=8.0;EPP=3.63072;EPPR=5.80219;DPRA=0.0;ODDS=21.6582;GTI=0;TYPE=del;CIGAR=1M2D35M;NUMALT=4;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=58.8214;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:94.0592:41:0:0:3:111:-66.9216,-58.013,-60.1701:3:8:38:.:.:.:.:.:.:0.220602	./1:129.75:161:28:1062:11:337:-114.323,-95.9216,-195.442:11:8:140:.:.:1:.:.:.:0.153097
chr6	117647254	.	TTATA	T	1725.24	REJECT	NS=2;DP=202;DPB=292.974;AC=2;AN=2;AF=0.25;RO=28;AO=31;PRO=61.0333;PAO=53.5333;QR=1062;QA=846;PQR=2225.6;PQA=1954.1;SRF=10;SRR=18;SAF=9;SAR=22;SRP=7.97367;SAP=14.8483;AB=0.153465;ABP=213.708;RUN=1;RPP=6.44263;RPPR=10.7656;RPL=19.0;RPR=12.0;EPP=3.08035;EPPR=5.80219;DPRA=0.0;ODDS=21.6582;GTI=0;TYPE=del;CIGAR=1M4D33M;NUMALT=4;MEANALT=9.5;LEN=4;MQM=59.3548;MQMR=58.8214;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:94.0592:41:0:0:9:247:-66.9216,-47.3891,-47.9504:9:24:38:.:.:1:.:.:.:0.220602	./1:129.75:161:28:1062:22:599:-114.323,-76.9553,-192.271:22:16:140:.:.:1:.:.:.:0.153097
chr6	117647254	.	TTATATA	T	1725.24	REJECT	NS=2;DP=202;DPB=292.974;AC=2;AN=3;AF=0.5;RO=28;AO=75;PRO=61.0333;PAO=48.2;QR=1062;QA=2316;PQR=2225.6;PQA=1756.1;SRF=10;SRR=18;SAF=34;SAR=41;SRP=7.97367;SAP=4.429;AB=0.371287;ABP=32.0779;RUN=1;RPP=9.52472;RPPR=10.7656;RPL=45.0;RPR=30.0;EPP=6.51361;EPPR=5.80219;DPRA=0.0;ODDS=21.6582;GTI=0;TYPE=del;CIGAR=1M6D31M;NUMALT=4;MEANALT=9.5;LEN=6;MQM=60.2667;MQMR=58.8214;PAIRED=0.986667;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.7205;FS=2.539;MLEAC=1;MLEAF=0.5;MQ=59.695;MQRankSum=-0.575;QD=10.46;RPA=18,15;RU=TA;ReadPosRankSum=0.999;SOR=1.051;STR;ClippingRankSum=-1.59	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:96.5296:48:0:0:20:663:-66.9216,-16.8331,-52.2779:31:64:46:13,42:810,0,155:1:.:1:.:.:.:0.220602	0/1:114.375:220:28:1062:55:1653:-114.323,0.0,-208.146:80:49:159:74,105:5960,0,3856:.:1:1:.:.:.:0.153097
chr6	117647254	.	TTATATATA	T	1725.24	REJECT	SOMATIC;NS=2;DP=202;DPB=292.974;AC=1;AN=3;AF=0.0;RO=28;AO=30;PRO=61.0333;PAO=41.2;QR=1062;QA=998;PQR=2225.6;PQA=1489.6;SRF=10;SRR=18;SAF=21;SAR=9;SRP=7.97367;SAP=13.4334;AB=0.148515;ABP=219.771;RUN=1;RPP=3.0103;RPPR=10.7656;RPL=15.0;RPR=15.0;EPP=3.29983;EPPR=5.80219;DPRA=0.0;ODDS=21.6582;GTI=0;TYPE=del;CIGAR=1M8D29M;NUMALT=4;MEANALT=9.5;LEN=8;MQM=59.9;MQMR=58.8214;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:94.0592:41:0:0:6:208:-66.9216,-62.6806,-204.477:6:16:38:.:.:.:.:.:.:0.220602	./1:129.75:161:28:1062:24:790:-114.323,-89.8492,-544.742:24:17:140:.:.:1:.:.:.:0.153097
chr6	117657490	.	C	T	236.356	REJECT	NS=2;DP=86;DPB=86.0;AC=1;AN=4;AF=0.25;RO=71;AO=15;PRO=0.0;PAO=0.0;QR=2594;QA=538;PQR=0.0;PQA=0.0;SRF=6;SRR=65;SAF=2;SAR=13;SRP=109.474;SAP=20.5268;AB=0.578947;ABP=4.03889;RUN=1;RPP=10.1038;RPPR=9.89173;RPL=11.0;RPR=4.0;EPP=10.1038;EPPR=25.3061;DPRA=0.0;ODDS=13.5133;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.933333;PAIREDR=0.971831;technology.ILLUMINA=1.0;BaseQRankSum=-0.241;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.107;QD=16.81;ReadPosRankSum=0.818;SOR=0.368;ClippingRankSum=-0.914	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.109:18:8:260:11:391:-30.2236,0.0,-18.3434:10:55:18:8,9:314,0,227:1:.:1:.:.:.:-1.61545	0/0:58.6874:67:63:2334:4:147:0.0,-4.90077,-196.957:4:6:67:.:.:.:.:0:.:.:.:-0.0108768
chr6	117657902	.	T	G	1701.5549999999998	REJECT	NS=2;DP=310;DPB=361.0;AC=2;AN=4;AF=0.5;RO=271;AO=90;PRO=0.0;PAO=0.0;QR=10400;QA=3475;PQR=0.0;PQA=0.0;SRF=183;SRR=88;SAF=66;SAR=24;SRP=75.3259;SAP=45.5712;AB=0.249307;ABP=200.073;RUN=1;RPP=4.55446;RPPR=7.24908;RPL=41.0;RPR=49.0;EPP=6.48466;EPPR=5.326;DPRA=0.0;ODDS=188.789;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.1556;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.99631;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2765;Dels=0.0;FS=4.5375;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=59.865;MQRankSum=-0.783;QD=9.235;ReadPosRankSum=0.1285;SOR=0.9825;ClippingRankSum=-0.351	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:56:2150:45:1738:-125.895,0.0,-166.162:44:44:99:55,43:1418,0,1996:1:.:1:.:.:.:-0.00526209	0/1:129.501:259:215:8250:45:1737:-85.8394,0.0,-671.657:44:17:259:215,44:1139,0,8425:.:1:1:.:.:.:-0.0108768
chr6	117659702	.	C	CA	370.48	REJECT	NS=2;DP=409;DPB=473.667;AC=2;AN=2;AF=0.0;RO=299;AO=32;PRO=52.5;PAO=44.5;QR=11066;QA=989;PQR=1829.83;PQA=1552.83;SRF=121;SRR=178;SAF=16;SAR=16;SRP=26.606;SAP=3.0103;AB=0.0782396;ABP=634.941;RUN=1;RPP=5.45321;RPPR=3.36616;RPL=19.0;RPR=13.0;EPP=3.28173;EPPR=3.01756;DPRA=0.0;ODDS=26.5407;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993311;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.149:105:72:2612:7:221:-12.242,-14.5664,-236.67:7:8:92:.:.:1:.:.:.:-0.00526209	./1:160.002:304:227:8454:25:768:-31.2975,-31.828,-738.585:25:9:286:.:.:1:.:.:.:-0.0108768
chr6	117659702	.	CA	C	370.48	REJECT	NS=2;DP=409;DPB=473.667;AC=2;AN=4;AF=0.5;RO=299;AO=47;PRO=52.5;PAO=41.0;QR=11066;QA=1592;PQR=1829.83;PQA=1422.33;SRF=121;SRR=178;SAF=22;SAR=25;SRP=26.606;SAP=3.42611;AB=0.114914;ABP=529.818;RUN=1;RPP=3.0565;RPPR=3.36616;RPL=23.0;RPR=24.0;EPP=16.3625;EPPR=3.01756;DPRA=0.0;ODDS=26.5407;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993311;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.352;FS=8.333;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.329;QD=0.64;ReadPosRankSum=-0.884;SOR=0.678;ClippingRankSum=-0.941	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:107.0745:102:72:2612:13:413:-12.242,0.0,-233.828:14:14:96:85,15:110,0,1934:1:.:1:.:.:.:-0.00526209	0/1:160.002:304:227:8454:34:1179:-31.2975,0.0,-734.45:34:12:286:.:.:.:.:1:.:.:.:-0.0108768
chr6	117661264	.	T	C	17890.25	REJECT	NS=2;DP=473;DPB=554.0;AC=4;AN=4;AF=1.0;RO=0;AO=554;PRO=0.0;PAO=0.0;QR=0;QA=21122;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=282;SAR=272;SRP=0.0;SAP=3.40226;AB=0.0;ABP=0.0;RUN=1;RPP=4.57815;RPPR=0.0;RPL=267.0;RPR=287.0;EPP=3.07301;EPPR=0.0;DPRA=0.0;ODDS=103.405;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99278;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9625;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.12;SOR=0.8055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.067:157:0:0:159:6006:-540.348,-43.0331,0.0:157:100:157:0,155:6183,464,0:1:.:1:.:.:.:-0.00526209	1/1:125.067:394:0:0:395:15116:-1359.53,-106.975,0.0:394:100:394:0,393:16856,1171,0:.:1:1:.:.:.:-0.0108768
chr6	117678083	.	A	G	11092.55	REJECT	NS=2;DP=302;DPB=347.0;AC=4;AN=4;AF=1.0;RO=0;AO=347;PRO=0.0;PAO=0.0;QR=0;QA=12983;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=113;SAR=234;SRP=0.0;SAP=94.6314;AB=0.0;ABP=0.0;RUN=1;RPP=44.068;RPPR=0.0;RPL=214.0;RPR=133.0;EPP=4.81882;EPPR=0.0;DPRA=0.0;ODDS=59.823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994236;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.145;SOR=1.6085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:89:3338:-300.496,-24.1057,0.0:88:100:88:0,87:3533,260,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:258:0:0:258:9645:-867.579,-69.8265,0.0:258:100:258:0,258:10710,752,0:.:1:1:.:.:.:-0.0108768
chr6	117708971	.	C	T	5179.67	REJECT	NS=2;DP=338;DPB=381.0;AC=2;AN=4;AF=0.5;RO=198;AO=183;PRO=0.0;PAO=0.0;QR=7521;QA=6982;PQR=0.0;PQA=0.0;SRF=99;SRR=99;SAF=97;SAR=86;SRP=3.0103;SAP=4.44608;AB=0.480315;ABP=4.29267;RUN=1;RPP=11.6606;RPPR=9.32731;RPL=78.0;RPR=105.0;EPP=3.11709;EPPR=3.40511;DPRA=0.0;ODDS=244.52;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994536;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.725;Dels=0.0;FS=4.787;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.814;QD=16.87;ReadPosRankSum=0.1225;SOR=0.7395;ClippingRankSum=1.065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:47:1786:38:1444:-106.972,0.0,-137.756:38:46:83:43,38:1331,0,1539:1:.:1:.:.:.:-0.00526209	0/1:129.501:295:151:5735:145:5538:-418.003,0.0,-435.668:144:49:295:151,144:5295,0,5482:.:1:1:.:.:.:-0.0108768
chr6	117724462	.	C	A	4777.84	REJECT	NS=2;DP=234;DPB=265.0;AC=3;AN=4;AF=0.75;RO=84;AO=180;PRO=0.0;PAO=0.0;QR=3172;QA=6747;PQR=0.0;PQA=0.0;SRF=21;SRR=63;SAF=49;SAR=131;SRP=48.6112;SAP=84.1269;AB=0.583333;ABP=15.3153;RUN=1;RPP=123.648;RPPR=23.2774;RPL=140.0;RPR=40.0;EPP=5.37479;EPPR=8.07707;DPRA=0.0;ODDS=39.0198;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.431;Dels=0.0;FS=0.996;HaplotypeScore=6.8235;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.853;QD=24.2;ReadPosRankSum=0.125;SOR=1.382	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.0525:60:0:0:61:2292:-206.433,-16.5201,0.0:60:100:60:0,60:2489,180,0:1:.:1:.:.:.:-0.00526209	0/1:122.573:204:84:3172:119:4455:-345.813,0.0,-230.416:119:59:203:84,119:4330,0,2941:.:1:1:.:.:.:-0.0108768
chr6	117725448	.	T	G	1646.065	REJECT	NS=2;DP=306;DPB=364.0;AC=2;AN=4;AF=0.5;RO=274;AO=90;PRO=0.0;PAO=0.0;QR=10352;QA=3320;PQR=0.0;PQA=0.0;SRF=165;SRR=109;SAF=39;SAR=51;SRP=27.8634;SAP=6.48466;AB=0.247253;ABP=204.981;RUN=1;RPP=9.18693;RPPR=8.36766;RPL=37.0;RPR=53.0;EPP=7.73928;EPPR=13.2812;DPRA=0.0;ODDS=167.771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0365;PAIRED=0.988889;PAIREDR=0.99635;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.384;Dels=0.0;FS=10.689;HaplotypeScore=14.5641;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.923;QD=8.035;ReadPosRankSum=0.6685;SOR=0.734;ClippingRankSum=-0.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1495:112:67:2440:48:1750:-126.397,0.0,-188.477:46:41:112:65,45:1388,0,2204:1:.:1:.:.:.:-0.00526209	0/1:118.1495:249:207:7912:42:1570:-73.797,0.0,-644.281:42:17:249:207,42:980,0,8088:.:1:1:.:.:.:-0.0108768
chr6	117725578	.	T	A	7692.47	REJECT	NS=2;DP=328;DPB=378.0;AC=3;AN=4;AF=0.75;RO=100;AO=277;PRO=0.0;PAO=0.0;QR=3880;QA=10546;PQR=0.0;PQA=0.0;SRF=49;SRR=51;SAF=130;SAR=147;SRP=3.09716;SAP=5.27584;AB=0.637993;ABP=49.156;RUN=1;RPP=36.1311;RPPR=3.79203;RPL=171.0;RPR=106.0;EPP=5.27584;EPPR=3.35774;DPRA=0.0;ODDS=62.7417;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.54;Dels=0.0;FS=1.0475;HaplotypeScore=5.9652;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.504;QD=27.37;ReadPosRankSum=0.647;SOR=0.778	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.7885:98:0:0:99:3740:-336.648,-26.8224,0.0:98:100:98:0,97:4009,291,0:1:.:1:.:.:.:-0.00526209	0/1:119.7885:279:100:3880:178:6806:-536.886,0.0,-273.72:178:64:278:100,178:6774,0,3515:.:1:1:.:.:.:-0.0108768
chr6	117730819	.	G	A	4853.895	REJECT	NS=2;DP=309;DPB=359.0;AC=2;AN=4;AF=0.5;RO=178;AO=181;PRO=0.0;PAO=0.0;QR=6763;QA=6908;PQR=0.0;PQA=0.0;SRF=37;SRR=141;SAF=44;SAR=137;SRP=134.958;SAP=106.773;AB=0.504178;ABP=3.06474;RUN=1;RPP=4.46195;RPPR=3.0103;RPL=96.0;RPR=85.0;EPP=23.1774;EPPR=24.5298;DPRA=0.0;ODDS=287.011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.15;Dels=0.0;FS=2.6085;HaplotypeScore=3.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2275;QD=18.39;ReadPosRankSum=0.775;SOR=0.4705;ClippingRankSum=0.335	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0015:99:46:1748:54:2028:-155.446,0.0,-130.642:53:54:99:45,53:1872,0,1596:1:.:1:.:.:.:-0.00526209	0/1:120.0015:259:132:5015:127:4880:-368.83,0.0,-380.971:127:49:259:132,127:4683,0,4800:.:1:1:.:.:.:-0.0108768
chr6	117735716	.	G	GA	1467.96	REJECT	NS=2;DP=272;DPB=312.312;AC=2;AN=2;AF=0.0;RO=167;AO=13;PRO=40.5;PAO=35.5;QR=6276;QA=381;PQR=1451.83;PQA=1249.83;SRF=37;SRR=130;SAF=2;SAR=11;SRP=115.472;SAP=16.5402;AB=0.0477941;ABP=486.131;RUN=1;RPP=11.1951;RPPR=42.3439;RPL=10.0;RPR=3.0;EPP=4.51363;EPPR=5.93594;DPRA=0.0;ODDS=98.2562;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.8802;PAIRED=1.0;PAIREDR=0.994012;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:132.756:73:23:866:3:63:-112.042,-113.688,-187.328:3:4:69:.:.:1:.:.:.:-0.00526209	./1:132.756:199:144:5410:10:318:-46.4931,-59.7886,-519.84:10:5:186:.:.:1:.:.:.:-0.0108768
chr6	117735716	.	GA	G	1467.96	REJECT	NS=2;DP=272;DPB=312.312;AC=2;AN=4;AF=0.5;RO=167;AO=75;PRO=40.5;PAO=31.0;QR=6276;QA=2526;PQR=1451.83;PQA=1106.33;SRF=37;SRR=130;SAF=18;SAR=57;SRP=115.472;SAP=47.0478;AB=0.275735;ABP=121.835;RUN=1;RPP=5.35549;RPPR=42.3439;RPL=42.0;RPR=33.0;EPP=18.3264;EPPR=5.93594;DPRA=0.0;ODDS=98.2562;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.8802;PAIRED=1.0;PAIREDR=0.994012;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.178;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.444;QD=11.22;ReadPosRankSum=-0.135;SOR=0.723;ClippingRankSum=0.29	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.878:72:23:866:43:1410:-112.042,0.0,-62.5744:45:64:70:24,47:1092,0,427:1:.:1:.:.:.:-0.00526209	0/1:132.756:199:144:5410:32:1116:-46.4931,0.0,-509.409:32:17:186:.:.:.:.:1:.:.:.:-0.0108768
chr6	117737390	.	G	A	4012.64	REJECT	NS=2;DP=248;DPB=286.0;AC=2;AN=4;AF=0.5;RO=143;AO=142;PRO=0.0;PAO=0.0;QR=5568;QA=5489;PQR=0.0;PQA=0.0;SRF=89;SRR=54;SAF=97;SAR=45;SRP=21.6121;SAP=44.36;AB=0.496503;ABP=3.04067;RUN=1;RPP=54.4528;RPPR=23.7987;RPL=42.0;RPR=100.0;EPP=3.98899;EPPR=11.0432;DPRA=0.0;ODDS=214.61;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993007;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.367;Dels=0.0;FS=2.648;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1185;QD=16.98;ReadPosRankSum=-0.9785;SOR=1.013;ClippingRankSum=0.207	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.4915:75:42:1630:33:1286:-95.4529,0.0,-126.429:33:44:74:41,33:1137,0,1409:1:.:1:.:.:.:-0.00526209	0/1:121.4915:210:101:3938:109:4203:-321.194,0.0,-297.379:109:52:210:101,109:4056,0,3794:.:1:1:.:.:.:-0.0108768
chr6	120016758	.	T	C	9669.01	REJECT	NS=2;DP=384;DPB=445.0;AC=2;AN=4;AF=0.5;RO=121;AO=324;PRO=0.0;PAO=0.0;QR=4477;QA=12206;PQR=0.0;PQA=0.0;SRF=51;SRR=70;SAF=134;SAR=190;SRP=9.48883;SAP=24.028;AB=0.72809;ABP=204.098;RUN=1;RPP=13.7336;RPPR=3.02825;RPL=142.0;RPR=182.0;EPP=13.7336;EPPR=20.2565;DPRA=0.0;ODDS=258.649;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996914;PAIREDR=0.975207;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.938;Dels=0.0;FS=0.0;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.363;QD=23.745;ReadPosRankSum=0.126;SOR=0.6865;ClippingRankSum=-0.248	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.14:118:61:2219:58:2153:-161.559,0.0,-167.499:58:49:118:59,58:1916,0,1869:1:.:1:.:.:.:-0.00526209	0/1:118.14:325:60:2258:266:10053:-815.953,0.0,-115.228:265:82:325:59,265:10231,0,1563:.:1:1:.:.:.:-0.0108768
chr6	127443092	.	T	C	14599.55	REJECT	NS=2;DP=382;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=441;PRO=0.0;PAO=0.0;QR=0;QA=17025;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=196;SAR=245;SRP=0.0;SAP=14.8328;AB=0.0;ABP=0.0;RUN=1;RPP=14.8328;RPPR=0.0;RPL=245.0;RPR=196.0;EPP=3.84245;EPPR=0.0;DPRA=0.0;ODDS=76.0875;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0454;MQMR=0.0;PAIRED=0.988662;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8628;MLEAC=2;MLEAF=1.0;MQ=60.035;QD=28.0;SOR=1.028	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:115:4450:-400.495,-31.1693,0.0:115:100:115:0,115:4832,346,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:325:0:0:326:12575:-1131.04,-88.3013,0.0:325:100:325:0,324:13979,966,0:.:1:1:.:.:.:-0.0108768
chr6	127443135	.	C	CTG	12400.2	REJECT	NS=2;DP=329;DPB=508.0;AC=4;AN=4;AF=1.0;RO=0;AO=364;PRO=26.0;PAO=29.0;QR=0;QA=13733;PQR=894.5;PQA=996.5;SRF=0;SRR=0;SAF=172;SAR=192;SRP=0.0;SAP=5.39653;AB=0.0;ABP=0.0;RUN=1;RPP=4.53749;RPPR=0.0;RPL=190.0;RPR=174.0;EPP=3.86934;EPPR=0.0;DPRA=0.0;ODDS=63.5575;GTI=0;TYPE=ins;CIGAR=1M2I5M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=0.994505;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=127443135;HOMLEN=1;HOMSEQ=T;SVLEN=2;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.035;QD=31.925;SOR=0.948	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:94:3550:-322.843,-25.7276,0.0:106:100:106:19,119:4768,321,0:1:.:1:1:.:.:-0.00526209	1/1:129.501:282:0:0:270:10183:-921.786,-73.6316,0.0:286:100:286:63,368:14953,861,0:.:1:1:1:.:.:-0.0108768
chr6	127445707	.	G	GT	5602.01	REJECT	NS=2;DP=256;DPB=303.526;AC=2;AN=2;AF=0.0;RO=48;AO=9;PRO=32.9167;PAO=28.9167;QR=1743;QA=315;PQR=1157.92;PQA=1015.92;SRF=25;SRR=23;SAF=4;SAR=5;SRP=3.19126;SAP=3.25157;AB=0.0351562;ABP=483.482;RUN=1;RPP=9.04217;RPPR=3.0103;RPL=7.0;RPR=2.0;EPP=3.25157;EPPR=7.5342;DPRA=0.0;ODDS=84.3565;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.657:75:27:970:7:260:-117.304,-103.659,-187.625:7:9:74:.:.:1:.:.:.:-0.00526209	./1:136.657:181:21:773:2:55:-449.657,-448.427,-520.666:2:1:177:.:.:1:.:.:.:-0.0108768
chr6	127445707	.	GT	G	4793.87	REJECT	NS=2;DP=242;DPB=303.526;AC=2;AN=4;AF=0.5;RO=48;AO=183;PRO=32.9167;PAO=36.4167;QR=1743;QA=6677;PQR=1157.92;PQA=1282.42;SRF=25;SRR=23;SAF=101;SAR=82;SRP=3.19126;SAP=7.29391;AB=0.714844;ABP=105.646;RUN=1;RPP=3.02217;RPPR=3.0103;RPL=91.0;RPR=92.0;EPP=6.43957;EPPR=7.5342;DPRA=0.0;ODDS=84.3565;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.2732;MQMR=60.0;PAIRED=0.989071;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.1;FS=0.986;MLEAC=1;MLEAF=0.5;MQ=60.165;MQRankSum=0.2935;QD=13.5;RPA=11,10;RU=T;ReadPosRankSum=0.0045;SOR=0.7865;STR;ClippingRankSum=-0.17	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8285:78:27:970:39:1465:-117.304,0.0,-98.8703:40:52:77:39,42:942,0,729:1:.:1:.:.:.:-0.00526209	0/1:117.8285:204:21:773:144:5212:-449.657,0.0,-37.8096:154:83:185:29,164:4023,0,185:.:1:1:.:.:.:-0.0108768
chr6	127445707	.	GTT	G	5602.01	PASS	SOMATIC;NS=2;DP=256;DPB=303.526;AC=2;AN=2;AF=0.0;RO=48;AO=11;PRO=32.9167;PAO=23.75;QR=1743;QA=373;PQR=1157.92;PQA=788.75;SRF=25;SRR=23;SAF=5;SAR=6;SRP=3.19126;SAP=3.20771;AB=0.0429688;ABP=467.468;RUN=1;RPP=3.20771;RPPR=3.0103;RPL=6.0;RPR=5.0;EPP=4.78696;EPPR=7.5342;DPRA=0.0;ODDS=84.3565;GTI=0;TYPE=del;CIGAR=1M2D16M;NUMALT=3;MEANALT=5.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.657:75:27:970:1:36:-117.304,-127.615,-272.697:1:1:74:.:.:1:.:.:.:-0.00526209	./1:136.657:181:21:773:10:337:-449.657,-432.429,-546.242:10:6:177:.:.:1:.:.:.:-0.0108768
chr6	127446610	.	G	C	14005.15	REJECT	NS=2;DP=364;DPB=412.0;AC=4;AN=4;AF=1.0;RO=0;AO=412;PRO=0.0;PAO=0.0;QR=0;QA=15943;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=205;SRP=0.0;SAP=3.03138;AB=0.0;ABP=0.0;RUN=1;RPP=6.5732;RPPR=0.0;RPL=193.0;RPR=219.0;EPP=11.4432;EPPR=0.0;DPRA=0.0;ODDS=63.6327;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995146;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=24.29;SOR=0.71	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3642:-327.861,-25.7603,0.0:94:100:94:0,93:3892,280,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:316:0:0:317:12301:-1106.4,-85.8837,0.0:316:100:316:0,316:13750,948,0:.:1:1:.:.:.:-0.0108768
chr6	127446790	.	T	C	13871.5	REJECT	NS=2;DP=371;DPB=419.0;AC=4;AN=4;AF=1.0;RO=1;AO=418;PRO=0.0;PAO=0.0;QR=16;QA=15784;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=191;SAR=227;SRP=5.18177;SAP=9.7429;AB=0.0;ABP=0.0;RUN=1;RPP=3.34277;RPPR=5.18177;RPL=205.0;RPR=213.0;EPP=3.52979;EPPR=5.18177;DPRA=0.0;ODDS=63.5638;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.657;Dels=0.0;FS=0.0;HaplotypeScore=4.8906;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.524;QD=29.84;ReadPosRankSum=1.24;SOR=0.6465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3567:-321.086,-25.7303,0.0:94:100:94:0,93:3740,279,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:324:1:16:323:12217:-1097.41,-86.2592,0.0:323:100:324:1,323:13627,951,0:.:1:1:.:.:.:-0.0108768
chr6	127448249	.	C	G	13572.599999999999	REJECT	NS=2;DP=363;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=15979;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=209;SAR=212;SRP=0.0;SAP=3.05672;AB=0.0;ABP=0.0;RUN=1;RPP=4.8723;RPPR=0.0;RPL=201.0;RPR=220.0;EPP=4.50093;EPPR=0.0;DPRA=0.0;ODDS=76.0402;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990499;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.26;SOR=0.7185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:115:4374:-393.646,-31.1488,0.0:114:100:114:0,113:4455,339,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:305:0:0:306:11605:-1043.77,-82.8137,0.0:305:100:305:0,305:12845,891,0:.:1:1:.:.:.:-0.0108768
chr6	127449246	.	A	G	14434.349999999999	REJECT	NS=2;DP=386;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=440;PRO=0.0;PAO=0.0;QR=0;QA=16669;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=218;SAR=222;SRP=0.0;SAP=3.08926;AB=0.0;ABP=0.0;RUN=1;RPP=3.72096;RPPR=0.0;RPL=226.0;RPR=214.0;EPP=3.72096;EPPR=0.0;DPRA=0.0;ODDS=72.2994;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9045;MQMR=0.0;PAIRED=0.997727;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.7817;MLEAC=2;MLEAF=1.0;MQ=59.96;QD=29.535;SOR=0.9045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.962:108:0:0:109:4147:-373.237,-29.5242,0.0:108:100:108:0,108:4484,324,0:1:.:1:.:.:.:-0.00526209	1/1:125.962:332:0:0:331:12522:-1125.86,-89.2129,0.0:331:100:331:0,331:13950,972,0:.:1:1:.:.:.:-0.0108768
chr6	127449447	.	A	G	15571.25	REJECT	NS=2;DP=410;DPB=468.0;AC=4;AN=4;AF=1.0;RO=0;AO=467;PRO=0.0;PAO=0.0;QR=0;QA=17926;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=234;SAR=233;SRP=0.0;SAP=3.01495;AB=0.0;ABP=0.0;RUN=1;RPP=10.0827;RPPR=0.0;RPL=214.0;RPR=253.0;EPP=11.6078;EPPR=0.0;DPRA=0.0;ODDS=75.8059;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.615;SOR=0.7375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.813:115:0:0:116:4389:-394.622,-31.047,0.0:115:100:115:0,114:4463,342,0:1:.:1:.:.:.:-0.00526209	1/1:123.813:352:0:0:351:13537:-1217.52,-95.0554,0.0:351:100:351:0,351:15108,1041,0:.:1:1:.:.:.:-0.0108768
chr6	127450254	.	C	T	15771.5	REJECT	NS=2;DP=415;DPB=465.0;AC=4;AN=4;AF=1.0;RO=1;AO=464;PRO=0.0;PAO=0.0;QR=16;QA=17788;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=226;SAR=238;SRP=5.18177;SAP=3.68421;AB=0.0;ABP=0.0;RUN=1;RPP=9.07545;RPPR=5.18177;RPL=214.0;RPR=250.0;EPP=15.6647;EPPR=5.18177;DPRA=0.0;ODDS=66.0511;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=55.0;PAIRED=0.997845;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.704;Dels=0.0;FS=0.0;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.0;MQ=59.995;MQRankSum=1.723;QD=32.05;ReadPosRankSum=-0.242;SOR=0.5305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:98:0:0:99:3756:-338.075,-26.8106,0.0:98:100:98:0,97:3881,290,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:365:1:16:365:14032:-1260.57,-97.6658,0.0:364:100:365:1,364:15638,1081,0:.:1:1:.:.:.:-0.0108768
chr6	127451665	.	C	T	13188.3	REJECT	NS=2;DP=348;DPB=401.0;AC=4;AN=4;AF=1.0;RO=1;AO=400;PRO=0.0;PAO=0.0;QR=15;QA=15323;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=192;SAR=208;SRP=5.18177;SAP=4.40004;AB=0.0;ABP=0.0;RUN=1;RPP=3.55317;RPPR=5.18177;RPL=195.0;RPR=205.0;EPP=4.76919;EPPR=5.18177;DPRA=0.0;ODDS=68.7845;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9975;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.697;Dels=0.0;FS=0.0;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.312;QD=30.855;ReadPosRankSum=-0.437;SOR=0.521;ClippingRankSum=1.207	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.089:102:1:15:104:3941:-353.38,-27.0946,0.0:101:99:102:1,98:4097,287,0:1:.:1:.:.:.:-0.00526209	1/1:125.089:295:0:0:296:11382:-1023.76,-80.1585,0.0:295:100:295:0,295:12670,876,0:.:1:1:.:.:.:-0.0108768
chr6	127452116	.	C	T	13598.2	REJECT	NS=2;DP=356;DPB=416.0;AC=4;AN=4;AF=1.0;RO=0;AO=416;PRO=0.0;PAO=0.0;QR=0;QA=16101;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=177;SAR=239;SRP=0.0;SAP=23.0755;AB=0.0;ABP=0.0;RUN=1;RPP=6.01695;RPPR=0.0;RPL=220.0;RPR=196.0;EPP=28.5877;EPPR=0.0;DPRA=0.0;ODDS=79.2073;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9568;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.955;SOR=1.0035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.9575:119:0:0:120:4642:-417.761,-32.5242,0.0:119:100:119:0,118:4949,355,0:1:.:1:.:.:.:-0.00526209	1/1:123.9575:296:0:0:296:11459:-1030.69,-80.1837,0.0:296:100:296:0,296:12831,885,0:.:1:1:.:.:.:-0.0108768
chr6	127452426	.	C	G	14280.65	REJECT	NS=2;DP=381;DPB=436.0;AC=4;AN=4;AF=1.0;RO=0;AO=435;PRO=0.0;PAO=0.0;QR=0;QA=16559;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=214;SRP=0.0;SAP=3.2549;AB=0.0;ABP=0.0;RUN=1;RPP=3.05523;RPPR=0.0;RPL=219.0;RPR=216.0;EPP=3.61432;EPPR=0.0;DPRA=0.0;ODDS=72.9676;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9724;MQMR=0.0;PAIRED=0.995402;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7813;MLEAC=2;MLEAF=1.0;MQ=59.985;QD=26.005;SOR=0.715	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:110:4231:-380.808,-29.8144,0.0:109:100:109:0,108:4532,325,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:326:0:0:325:12328:-1108.78,-87.9622,0.0:325:100:325:0,325:13737,954,0:.:1:1:.:.:.:-0.0108768
chr6	127452581	.	T	C	14059.75	REJECT	NS=2;DP=368;DPB=431.0;AC=4;AN=4;AF=1.0;RO=0;AO=430;PRO=0.0;PAO=0.0;QR=0;QA=16548;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=205;SRP=0.0;SAP=5.03027;AB=0.0;ABP=0.0;RUN=1;RPP=4.30308;RPPR=0.0;RPL=207.0;RPR=223.0;EPP=17.7359;EPPR=0.0;DPRA=0.0;ODDS=81.6042;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9581;MQMR=0.0;PAIRED=0.988372;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8799;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.805;SOR=0.8515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:123:0:0:124:4680:-421.143,-33.5652,0.0:122:100:122:0,121:4965,363,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:306:0:0:306:11868:-1067.48,-82.9035,0.0:306:100:306:0,306:13322,918,0:.:1:1:.:.:.:-0.0108768
chr6	127452639	.	C	G	13839.099999999999	REJECT	NS=2;DP=364;DPB=422.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=16192;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=211;SAR=210;SRP=0.0;SAP=3.01546;AB=0.0;ABP=0.0;RUN=1;RPP=6.7704;RPPR=0.0;RPL=224.0;RPR=197.0;EPP=11.6807;EPPR=0.0;DPRA=0.0;ODDS=75.4595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988124;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.8;SOR=0.7395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.267:113:0:0:114:4358:-392.228,-30.8966,0.0:113:100:113:0,112:4651,337,0:1:.:1:.:.:.:-0.00526209	1/1:123.267:307:0:0:307:11834:-1064.39,-83.1375,0.0:307:100:307:0,307:13195,909,0:.:1:1:.:.:.:-0.0108768
chr6	127452935	.	C	T	12984.0	REJECT	NS=2;DP=336;DPB=386.0;AC=4;AN=4;AF=1.0;RO=0;AO=386;PRO=0.0;PAO=0.0;QR=0;QA=15004;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=189;SRP=0.0;SAP=3.37034;AB=0.0;ABP=0.0;RUN=1;RPP=3.82038;RPPR=0.0;RPL=199.0;RPR=187.0;EPP=4.11291;EPPR=0.0;DPRA=0.0;ODDS=65.5045;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994819;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8982;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.55;SOR=0.9625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.094:97:0:0:98:3774:-339.728,-26.5732,0.0:97:100:97:0,96:4110,289,0:1:.:1:.:.:.:-0.00526209	1/1:125.094:287:0:0:288:11230:-1010.09,-78.0307,0.0:287:100:287:0,287:12542,861,0:.:1:1:.:.:.:-0.0108768
chr6	127454247	.	C	T	13040.599999999999	REJECT	NS=2;DP=344;DPB=386.0;AC=4;AN=4;AF=1.0;RO=0;AO=384;PRO=0.0;PAO=0.0;QR=0;QA=14657;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=198;SRP=0.0;SAP=3.8246;AB=0.0;ABP=0.0;RUN=1;RPP=4.11866;RPPR=0.0;RPL=199.0;RPR=185.0;EPP=5.74726;EPPR=0.0;DPRA=0.0;ODDS=53.6086;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994792;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.915;SOR=0.8135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:0:0:79:2973:-267.686,-21.4069,0.0:76:100:76:0,74:3051,222,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:304:0:0:305:11684:-1050.89,-82.5829,0.0:304:100:304:0,303:12970,897,0:.:1:1:.:.:.:-0.0108768
chr6	127454893	.	G	A	2332.63	REJECT	NS=2;DP=348;DPB=403.0;AC=2;AN=4;AF=0.5;RO=296;AO=106;PRO=0.0;PAO=0.0;QR=11065;QA=4011;PQR=0.0;PQA=0.0;SRF=158;SRR=138;SAF=50;SAR=56;SRP=5.94472;SAP=3.74778;AB=0.263027;ABP=199.58;RUN=1;RPP=3.0103;RPPR=3.74391;RPL=53.0;RPR=53.0;EPP=5.96022;EPPR=3.03964;DPRA=0.0;ODDS=137.681;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996622;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.907;Dels=0.0;FS=3.24;HaplotypeScore=10.6475;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0195;QD=11.64;ReadPosRankSum=-0.2585;SOR=0.6855;ClippingRankSum=1.344	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7105:108:45:1617:64:2454:-191.373,0.0,-116.008:64:59:108:43,64:2232,0,1217:1:.:1:.:.:.:-0.00526209	0/1:119.7105:294:251:9448:42:1557:-60.779,0.0,-770.509:42:14:293:251,42:872,0,9624:.:1:1:.:.:.:-0.0108768
chr6	127455029	.	A	G	13861.55	REJECT	NS=2;DP=367;DPB=413.0;AC=4;AN=4;AF=1.0;RO=0;AO=413;PRO=0.0;PAO=0.0;QR=0;QA=15662;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=198;SRP=0.0;SAP=4.5298;AB=0.0;ABP=0.0;RUN=1;RPP=11.8487;RPPR=0.0;RPL=227.0;RPR=186.0;EPP=3.01556;EPPR=0.0;DPRA=0.0;ODDS=61.0891;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987893;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8567;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.705;SOR=0.8045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:91:3422:-308.058,-24.6556,0.0:88:100:88:0,86:3557,258,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:322:0:0:322:12240:-1100.92,-87.1901,0.0:322:100:322:0,322:13714,957,0:.:1:1:.:.:.:-0.0108768
chr6	127455138	.	C	T	15269.349999999999	REJECT	NS=2;DP=403;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=456;PRO=0.0;PAO=0.0;QR=0;QA=17426;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=252;SAR=204;SRP=0.0;SAP=13.982;AB=0.0;ABP=0.0;RUN=1;RPP=4.55319;RPPR=0.0;RPL=237.0;RPR=219.0;EPP=3.02935;EPPR=0.0;DPRA=0.0;ODDS=67.9513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989035;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.36;SOR=1.001	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.4365:100:0:0:102:3848:-346.369,-27.6358,0.0:100:100:100:0,99:4184,297,0:1:.:1:.:.:.:-0.00526209	1/1:125.4365:352:0:0:354:13578:-1221.16,-95.8281,0.0:352:100:352:0,351:14947,1029,0:.:1:1:.:.:.:-0.0108768
chr6	127455821	.	A	C	13485.8	REJECT	NS=2;DP=366;DPB=419.0;AC=4;AN=4;AF=1.0;RO=2;AO=417;PRO=0.0;PAO=0.0;QR=32;QA=15651;PQR=0.0;PQA=0.0;SRF=2;SRR=0;SAF=214;SAR=203;SRP=7.35324;SAP=3.64039;AB=0.0;ABP=0.0;RUN=1;RPP=15.5132;RPPR=7.35324;RPL=233.0;RPR=184.0;EPP=5.765;EPPR=7.35324;DPRA=0.0;ODDS=69.7874;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990408;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.387;Dels=0.0;FS=0.0;HaplotypeScore=5.799;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.443;QD=30.015;ReadPosRankSum=-0.153;SOR=0.4435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.2345:104:0:0:105:3932:-353.903,-28.4332,0.0:104:100:104:0,104:4299,312,0:1:.:1:.:.:.:-0.00526209	1/1:125.2345:313:2:32:312:11719:-1051.19,-82.0966,0.0:311:99:313:2,311:12989,909,0:.:1:1:.:.:.:-0.0108768
chr6	127456122	.	A	G	13715.05	REJECT	NS=2;DP=364;DPB=423.0;AC=4;AN=4;AF=1.0;RO=0;AO=423;PRO=0.0;PAO=0.0;QR=0;QA=16156;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=194;SAR=229;SRP=0.0;SAP=9.29884;AB=0.0;ABP=0.0;RUN=1;RPP=3.42611;RPPR=0.0;RPL=216.0;RPR=207.0;EPP=5.27418;EPPR=0.0;DPRA=0.0;ODDS=77.3109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990544;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.78;SOR=0.8355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3265:116:0:0:117:4483:-403.454,-31.7006,0.0:116:100:116:0,115:4627,345,0:1:.:1:.:.:.:-0.00526209	1/1:125.3265:305:0:0:306:11673:-1049.91,-82.8497,0.0:305:100:305:0,304:12976,900,0:.:1:1:.:.:.:-0.0108768
chr6	127456561	.	TA	T	223.466	REJECT	NS=2;DP=61;DPB=171.744;AC=2;AN=2;AF=0.25;RO=2;AO=4;PRO=64.7167;PAO=57.7167;QR=74;QA=93;PQR=2280.92;PQA=2021.92;SRF=1;SRR=1;SAF=2;SAR=2;SRP=3.0103;SAP=3.0103;AB=0.0655738;ABP=103.005;RUN=1;RPP=5.18177;RPPR=3.0103;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=0.907768;GTI=0;TYPE=del;CIGAR=1M1D37M;NUMALT=5;MEANALT=20.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:5.41427:10:1:37:1:16:-12.7091,-7.12487,-12.25:1:14:7:.:.:1:.:.:.:-0.00526209	./1:96.9145:51:1:37:3:77:-14.9047,-11.2241,-36.5316:3:14:21:.:.:1:.:.:.:-0.0108768
chr6	127456561	.	TAA	T	223.466	REJECT	NS=2;DP=61;DPB=171.744;AC=2;AN=3;AF=0.5;RO=2;AO=7;PRO=64.7167;PAO=53.05;QR=74;QA=234;PQR=2280.92;PQA=1861.42;SRF=1;SRR=1;SAF=6;SAR=1;SRP=3.0103;SAP=10.7656;AB=0.114754;ABP=81.6461;RUN=1;RPP=10.7656;RPPR=3.0103;RPL=1.0;RPR=6.0;EPP=5.80219;EPPR=7.35324;DPRA=0.0;ODDS=0.907768;GTI=0;TYPE=del;CIGAR=1M2D36M;NUMALT=5;MEANALT=20.0;LEN=2;MQM=62.8571;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.679;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=0.9975;QD=5.85;RPA=25,23;RU=A;ReadPosRankSum=1.011;SOR=1.0705;STR;ClippingRankSum=-0.536	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.207135:14:1:37:1:39:-12.7091,-0.198429,-21.9715:6:36:13:8,11:234,0,112:1:.:1:.:.:.:-0.00526209	0/1:97.95725:80:1:37:6:195:-14.9047,0.0,-78.0108:21:43:41:26,36:652,0,383:.:1:1:.:.:.:-0.0108768
chr6	127456561	.	TAAA	T	223.466	REJECT	SOMATIC;NS=2;DP=61;DPB=171.744;AC=1;AN=3;AF=0.0;RO=2;AO=7;PRO=64.7167;PAO=46.65;QR=74;QA=232;PQR=2280.92;PQA=1629.88;SRF=1;SRR=1;SAF=6;SAR=1;SRP=3.0103;SAP=10.7656;AB=0.114754;ABP=81.6461;RUN=1;RPP=3.32051;RPPR=3.0103;RPL=3.0;RPR=4.0;EPP=5.80219;EPPR=7.35324;DPRA=0.0;ODDS=0.907768;GTI=0;TYPE=del;CIGAR=1M3D35M;NUMALT=5;MEANALT=20.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:5.41427:10:1:37:3:89:-12.7091,-13.0975,-92.8331:3:43:7:.:.:.:.:.:.:-0.00526209	./1:96.9145:51:1:37:4:143:-14.9047,-22.8959,-237.907:4:19:21:.:.:1:.:.:.:-0.0108768
chr6	127456585	.	AATTTAC	TTTAA	223.466	REJECT	SOMATIC;NS=2;DP=61;DPB=171.744;AC=1;AN=3;AF=0.0;RO=2;AO=4;PRO=64.7167;PAO=20.6333;QR=74;QA=64;PQR=2280.92;PQA=667.833;SRF=1;SRR=1;SAF=4;SAR=0;SRP=3.0103;SAP=11.6962;AB=0.0655738;ABP=103.005;RUN=1;RPP=11.6962;RPPR=3.0103;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=7.35324;DPRA=0.0;ODDS=0.907768;GTI=0;TYPE=complex;CIGAR=1M2D27M1X8M;NUMALT=5;MEANALT=20.0;LEN=37;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:5.41427:10:1:37:1:16:-12.7091,-35.084,-403.417:1:14:7:.:.:.:.:.:.:-0.00526209	./1:96.9145:51:1:37:3:48:-14.9047,-117.878,-1292.69:3:14:21:.:.:1:.:.:.:-0.0108768
chr6	127456585	.	AATTTACAAC	TTTAAAAA	223.466	REJECT	SOMATIC;NS=2;DP=61;DPB=171.744;AC=1;AN=3;AF=0.0;RO=2;AO=4;PRO=64.7167;PAO=15.2333;QR=74;QA=73;PQR=2280.92;PQA=497.033;SRF=1;SRR=1;SAF=4;SAR=0;SRP=3.0103;SAP=11.6962;AB=0.0784314;ABP=81.7368;RUN=1;RPP=11.6962;RPPR=3.0103;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=7.35324;DPRA=0.0;ODDS=0.907768;GTI=0;TYPE=complex;CIGAR=1M2D27M1X2M1X5M;NUMALT=5;MEANALT=33.0;LEN=37;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:5.41427:10:1:37:0:0:-12.7091,-44.2067,-484.673:0:0:7:.:.:.:.:.:.:-0.00526209	./1:96.9145:51:1:37:4:73:-14.9047,-138.927,-1560.8:4:19:21:.:.:1:.:.:.:-0.0108768
chr6	127457001	.	T	G	3276.73	REJECT	NS=2;DP=93;DPB=108.0;AC=4;AN=4;AF=1.0;RO=0;AO=108;PRO=0.0;PAO=0.0;QR=0;QA=3908;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=82;SAR=26;SRP=0.0;SAP=66.0634;AB=0.0;ABP=0.0;RUN=1;RPP=3.332;RPPR=0.0;RPL=52.0;RPR=56.0;EPP=3.332;EPPR=0.0;DPRA=0.0;ODDS=22.4684;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.981481;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.935;SOR=2.665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:92.28955:29:0:0:29:1043:-94.1669,-7.88286,0.0:29:100:29:0,29:1181,87,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:79:0:0:79:2865:-257.969,-21.3827,0.0:79:100:79:0,79:3160,226,0:.:1:1:.:.:.:-0.0108768
chr6	127457071	.	CA	C	391.136	REJECT	NS=2;DP=81;DPB=179.84;AC=2;AN=4;AF=0.5;RO=8;AO=28;PRO=92.3333;PAO=43.3333;QR=272;QA=786;PQR=3220.58;PQA=1481.58;SRF=7;SRR=1;SAF=17;SAR=11;SRP=12.7819;SAP=5.80219;AB=0.345679;ABP=19.7655;RUN=1;RPP=18.2106;RPPR=20.3821;RPL=7.0;RPR=21.0;EPP=22.8638;EPPR=12.7819;DPRA=0.0;ODDS=11.2004;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=15.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.964286;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.136;FS=18.419;MLEAC=1;MLEAF=0.5;MQ=58.32;MQRankSum=0.022;QD=3.91;RPA=17,16;RU=A;ReadPosRankSum=-2.699;SOR=0.048;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:48.643:17:1:34:4:123:-6.47189,0.0,-36.3654:4:67:6:.:.:.:.:1:.:.:.:-0.00526209	0/1:129.501:103:7:238:24:663:-41.2479,0.0,-118.92:38:56:66:33,53:600,0,367:.:1:1:.:.:.:-0.0108768
chr6	127457071	.	CAA	C	391.136	REJECT	NS=2;DP=81;DPB=179.84;AC=2;AN=2;AF=0.0;RO=8;AO=12;PRO=92.3333;PAO=34.3333;QR=272;QA=307;PQR=3220.58;PQA=1158.58;SRF=7;SRR=1;SAF=4;SAR=8;SRP=12.7819;SAP=5.9056;AB=0.148148;ABP=90.1105;RUN=1;RPP=5.9056;RPPR=20.3821;RPL=4.0;RPR=8.0;EPP=5.9056;EPPR=12.7819;DPRA=0.0;ODDS=11.2004;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=15.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:48.643:17:1:34:1:14:-6.47189,-11.7223,-79.6948:1:17:6:.:.:1:.:.:.:-0.00526209	./1:160.002:64:7:238:11:293:-41.2479,-33.3307,-252.104:11:23:47:.:.:1:.:.:.:-0.0108768
chr6	127457071	.	CAAA	C	391.136	REJECT	NS=2;DP=81;DPB=179.84;AC=2;AN=2;AF=0.0;RO=8;AO=5;PRO=92.3333;PAO=31.0;QR=272;QA=141;PQR=3220.58;PQA=976.25;SRF=7;SRR=1;SAF=3;SAR=2;SRP=12.7819;SAP=3.44459;AB=0.078125;ABP=101.948;RUN=1;RPP=6.91895;RPPR=20.3821;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=12.7819;DPRA=0.0;ODDS=11.2004;GTI=0;TYPE=del;CIGAR=1M3D21M;NUMALT=3;MEANALT=18.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:48.643:17:1:34:0:0:-6.47189,-12.8045,-81.1515:0:0:6:.:.:1:.:.:.:-0.00526209	./1:160.002:64:7:238:5:141:-41.2479,-59.1615,-367.876:5:11:47:.:.:1:.:.:.:-0.0108768
chr6	127457260	.	A	G	13858.95	REJECT	NS=2;DP=367;DPB=420.0;AC=4;AN=4;AF=1.0;RO=1;AO=419;PRO=0.0;PAO=0.0;QR=40;QA=16063;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=227;SAR=192;SRP=5.18177;SAP=9.35888;AB=0.0;ABP=0.0;RUN=1;RPP=14.4585;RPPR=5.18177;RPL=186.0;RPR=233.0;EPP=3.13986;EPPR=5.18177;DPRA=0.0;ODDS=70.4671;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995227;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.644;Dels=0.0;FS=1.673;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.739;QD=28.19;ReadPosRankSum=0.838;SOR=0.662	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:106:4025:-362.289,-28.7284,0.0:103:100:103:0,101:4146,303,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:314:1:40:313:12038:-1079.14,-81.4354,0.0:313:100:314:1,313:13383,885,0:.:1:1:.:.:.:-0.0108768
chr6	127458308	.	G	A	5534.72	REJECT	NS=2;DP=150;DPB=168.0;AC=4;AN=4;AF=1.0;RO=0;AO=168;PRO=0.0;PAO=0.0;QR=0;QA=6445;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=21;SAR=147;SRP=0.0;SAP=208.214;AB=0.0;ABP=0.0;RUN=1;RPP=4.30284;RPPR=0.0;RPL=79.0;RPR=89.0;EPP=3.83753;EPPR=0.0;DPRA=0.0;ODDS=26.8399;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994048;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.965;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.755;SOR=3.808	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:107.7805:35:0:0:36:1395:-125.82,-9.78135,0.0:35:100:35:0,35:1519,105,0:1:.:1:.:.:.:-0.00526209	1/1:123.2355:132:0:0:132:5050:-454.401,-35.7396,0.0:132:100:132:0,132:5609,385,0:.:1:1:.:.:.:-0.0108768
chr6	127458826	.	G	C	6718.55	REJECT	NS=2;DP=409;DPB=475.0;AC=2;AN=4;AF=0.5;RO=238;AO=237;PRO=0.0;PAO=0.0;QR=9175;QA=9091;PQR=0.0;PQA=0.0;SRF=115;SRR=123;SAF=127;SAR=110;SRP=3.59423;SAP=5.65821;AB=0.498947;ABP=3.01487;RUN=1;RPP=3.09276;RPPR=7.42624;RPL=120.0;RPR=117.0;EPP=18.4122;EPPR=4.32413;DPRA=0.0;ODDS=377.305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9496;PAIRED=0.991561;PAIREDR=0.995798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.548;Dels=0.0;FS=3.266;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.264;QD=17.21;ReadPosRankSum=0.2965;SOR=0.8275;ClippingRankSum=-0.422	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9135:130:74:2847:58:2230:-165.303,0.0,-220.408:57:44:130:71,57:1992,0,2619:1:.:1:.:.:.:-0.00526209	0/1:117.9135:343:164:6328:179:6861:-524.202,0.0,-476.263:179:52:343:164,179:6650,0,6066:.:1:1:.:.:.:-0.0108768
chr6	127459004	.	G	T	11115.849999999999	REJECT	NS=2;DP=299;DPB=348.0;AC=4;AN=4;AF=1.0;RO=1;AO=347;PRO=0.0;PAO=0.0;QR=40;QA=13155;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=148;SAR=199;SRP=5.18177;SAP=19.287;AB=0.0;ABP=0.0;RUN=1;RPP=3.51719;RPPR=5.18177;RPL=178.0;RPR=169.0;EPP=18.0354;EPPR=5.18177;DPRA=0.0;ODDS=58.0269;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976945;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.065;SOR=0.9595	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:1:40:95:3641:-324.163,-22.4226,0.0:93:99:93:0,91:3812,274,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:251:0:0:252:9514:-855.816,-68.2314,0.0:251:100:251:0,250:10524,737,0:.:1:1:.:.:.:-0.0108768
chr6	127459552	.	G	C	13008.8	REJECT	NS=2;DP=347;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=404;PRO=0.0;PAO=0.0;QR=0;QA=15364;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=203;SRP=0.0;SAP=3.0318;AB=0.0;ABP=0.0;RUN=1;RPP=15.3941;RPPR=0.0;RPL=178.0;RPR=226.0;EPP=3.0318;EPPR=0.0;DPRA=0.0;ODDS=76.6189;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992574;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8299;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.13;SOR=0.985	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4363:-392.639,-31.4001,0.0:114:100:114:0,113:4589,338,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:289:0:0:288:11001:-989.489,-77.9798,0.0:288:100:288:0,288:12279,852,0:.:1:1:.:.:.:-0.0108768
chr6	127460349	.	G	A	14822.2	REJECT	NS=2;DP=389;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=456;PRO=0.0;PAO=0.0;QR=0;QA=17531;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=249;SAR=207;SRP=0.0;SAP=11.4105;AB=0.0;ABP=0.0;RUN=1;RPP=3.02935;RPPR=0.0;RPL=229.0;RPR=227.0;EPP=20.1535;EPPR=0.0;DPRA=0.0;ODDS=84.7529;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986842;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8371;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.885;SOR=0.9065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:128:0:0:129:4925:-443.177,-34.9327,0.0:128:100:128:0,127:5249,381,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:325:0:0:327:12606:-1133.82,-88.5696,0.0:325:100:325:0,323:13971,966,0:.:1:1:.:.:.:-0.0108768
chr6	127460690	.	C	CT	7044.99	REJECT	NS=2;DP=269;DPB=351.083;AC=4;AN=4;AF=1.0;RO=6;AO=259;PRO=40.5;PAO=46.5;QR=221;QA=9161;PQR=1362.0;PQA=1575.0;SRF=4;SRR=2;SAF=127;SAR=132;SRP=4.45795;SAP=3.2199;AB=0.0;ABP=0.0;RUN=1;RPP=3.42112;RPPR=3.0103;RPL=133.0;RPR=126.0;EPP=5.43329;EPPR=8.80089;DPRA=0.0;ODDS=50.9116;GTI=0;TYPE=ins;CIGAR=1M1I11M;NUMALT=1;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.338;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.265;QD=23.745;RPA=8,9;RU=T;ReadPosRankSum=0.905;SOR=0.7415;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:0:0:74:2654:-241.626,-20.2356,0.0:74:100:74:0,74:2092,221,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:228:6:221:185:6507:-581.654,-32.9637,0.0:193:97:199:6,202:5915,466,0:.:1:1:.:.:.:-0.0108768
chr6	127461152	.	T	C	14589.9	REJECT	NS=2;DP=390;DPB=448.0;AC=4;AN=4;AF=1.0;RO=0;AO=448;PRO=0.0;PAO=0.0;QR=0;QA=16964;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=223;SRP=0.0;SAP=3.02969;AB=0.0;ABP=0.0;RUN=1;RPP=3.08785;RPPR=0.0;RPL=226.0;RPR=222.0;EPP=10.0094;EPPR=0.0;DPRA=0.0;ODDS=76.0382;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0223;MQMR=0.0;PAIRED=0.995536;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9662;MLEAC=2;MLEAF=1.0;MQ=60.05;QD=29.255;SOR=0.708	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9595:112:0:0:115:4353:-391.763,-31.1479,0.0:112:100:112:0,110:4443,330,0:1:.:1:.:.:.:-0.00526209	1/1:124.9595:333:0:0:333:12611:-1134.22,-90.1242,0.0:333:100:333:0,333:13998,972,0:.:1:1:.:.:.:-0.0108768
chr6	127461682	.	A	C	13811.8	REJECT	NS=2;DP=370;DPB=428.0;AC=4;AN=4;AF=1.0;RO=2;AO=426;PRO=0.0;PAO=0.0;QR=49;QA=16135;PQR=0.0;PQA=0.0;SRF=1;SRR=1;SAF=188;SAR=238;SRP=3.0103;SAP=15.7537;AB=0.0;ABP=0.0;RUN=1;RPP=4.31522;RPPR=7.35324;RPL=221.0;RPR=205.0;EPP=4.31522;EPPR=3.0103;DPRA=0.0;ODDS=68.606;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99061;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.932;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.486;QD=30.6;ReadPosRankSum=2.277;SOR=0.9045;ClippingRankSum=-0.378	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.8705:114:2:49:113:4237:-376.908,-26.716,0.0:112:98:114:2,112:4466,292,0:1:.:1:.:.:.:-0.00526209	1/1:124.8705:313:0:0:313:11898:-1070.14,-84.725,0.0:313:100:313:0,313:13227,918,0:.:1:1:.:.:.:-0.0108768
chr6	127462149	.	T	C	13330.5	REJECT	NS=2;DP=352;DPB=395.0;AC=4;AN=4;AF=1.0;RO=1;AO=394;PRO=0.0;PAO=0.0;QR=15;QA=15039;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=203;SAR=191;SRP=5.18177;SAP=3.80393;AB=0.0;ABP=0.0;RUN=1;RPP=3.36303;RPPR=5.18177;RPL=201.0;RPR=193.0;EPP=3.20871;EPPR=5.18177;DPRA=0.0;ODDS=55.0284;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992386;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.91;SOR=0.901	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:1:15:82:3094:-277.194,-21.1204,0.0:81:99:81:0,80:3311,239,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:311:0:0:312:11945:-1074.34,-84.4669,0.0:311:100:311:0,310:13208,912,0:.:1:1:.:.:.:-0.0108768
chr6	127463376	.	C	A	14297.3	REJECT	NS=2;DP=374;DPB=418.0;AC=4;AN=4;AF=1.0;RO=0;AO=418;PRO=0.0;PAO=0.0;QR=0;QA=16080;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=240;SAR=178;SRP=0.0;SAP=22.9795;AB=0.0;ABP=0.0;RUN=1;RPP=12.1741;RPPR=0.0;RPL=188.0;RPR=230.0;EPP=14.0027;EPPR=0.0;DPRA=0.0;ODDS=59.2237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995215;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.26;SOR=1.0935	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.0195:87:0:0:88:3350:-301.581,-23.8455,0.0:87:100:87:0,86:3650,258,0:1:.:1:.:.:.:-0.00526209	1/1:128.0195:330:0:0:330:12730:-1144.94,-89.3669,0.0:330:100:330:0,330:14240,981,0:.:1:1:.:.:.:-0.0108768
chr6	127463645	.	G	A	14863.9	REJECT	NS=2;DP=388;DPB=439.0;AC=4;AN=4;AF=1.0;RO=1;AO=438;PRO=0.0;PAO=0.0;QR=15;QA=16946;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=234;SAR=204;SRP=5.18177;SAP=7.47223;AB=0.0;ABP=0.0;RUN=1;RPP=5.86593;RPPR=5.18177;RPL=231.0;RPR=207.0;EPP=3.32759;EPPR=5.18177;DPRA=0.0;ODDS=67.9569;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997717;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.722;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.889;QD=32.55;ReadPosRankSum=1.413;SOR=0.5675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.0035:100:0:0:102:3921:-352.921,-27.6382,0.0:100:100:100:0,99:4041,300,0:1:.:1:.:.:.:-0.00526209	1/1:127.0035:337:1:15:336:13025:-1170.1,-89.9129,0.0:336:100:337:1,336:14567,999,0:.:1:1:.:.:.:-0.0108768
chr6	127464127	.	AT	A	747.6310000000001	REJECT	NS=2;DP=44;DPB=57.9167;AC=3;AN=3;AF=0.75;RO=4;AO=30;PRO=12.6667;PAO=14.6667;QR=150;QA=1080;PQR=397.833;PQA=473.833;SRF=1;SRR=3;SAF=21;SAR=9;SRP=5.18177;SAP=13.4334;AB=0.666667;ABP=13.8677;RUN=1;RPP=5.61607;RPPR=11.6962;RPL=12.0;RPR=18.0;EPP=13.4334;EPPR=5.18177;DPRA=0.0;ODDS=1.22909;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.5333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.274;FS=2.829;MLEAC=1;MLEAF=0.75;MQ=60.705;MQRankSum=0.2135;QD=10.845;RPA=16,15;RU=T;ReadPosRankSum=0.2135;SOR=0.787;STR;ClippingRankSum=0.751	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:16.0675:10:1:37:8:301:-24.4908,0.0,-3.87821:8:84:9:1,8:143,2,0:1:.:1:.:.:.:-0.00526209	./1:18.727885:39:3:113:22:779:-77.0106,-1.34828,-6.92963:27:81:33:4,32:587,31,0:.:1:1:.:.:.:-0.0108768
chr6	127464127	.	ATT	A	936.532	REJECT	NS=2;DP=45;DPB=57.9167;AC=2;AN=2;AF=0.25;RO=4;AO=6;PRO=12.6667;PAO=9.66667;QR=150;QA=216;PQR=397.833;PQA=284.333;SRF=1;SRR=3;SAF=4;SAR=2;SRP=5.18177;SAP=4.45795;AB=0.133333;ABP=55.5599;RUN=1;RPP=4.45795;RPPR=11.6962;RPL=2.0;RPR=4.0;EPP=16.0391;EPPR=5.18177;DPRA=0.0;ODDS=1.22909;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=2;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:30.135:11:1:37:1:34:-24.4908,-22.2325,-28.0167:1:10:10:.:.:1:.:.:.:-0.00526209	./1:6.45577:34:3:113:5:182:-77.0106,-64.137,-88.1815:5:17:30:.:.:1:.:.:.:-0.0108768
chr6	127464754	.	C	T	14485.599999999999	REJECT	NS=2;DP=383;DPB=436.0;AC=4;AN=4;AF=1.0;RO=0;AO=436;PRO=0.0;PAO=0.0;QR=0;QA=16711;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=193;SRP=0.0;SAP=15.4614;AB=0.0;ABP=0.0;RUN=1;RPP=4.28529;RPPR=0.0;RPL=226.0;RPR=210.0;EPP=24.7051;EPPR=0.0;DPRA=0.0;ODDS=70.4752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997706;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=12.5783;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.255;SOR=0.955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:106:4105:-369.474,-28.7319,0.0:104:100:104:0,103:4321,309,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:330:0:0:330:12606:-1133.76,-89.3233,0.0:330:100:330:0,330:14045,969,0:.:1:1:.:.:.:-0.0108768
chr6	127465044	.	T	C	14152.5	REJECT	NS=2;DP=375;DPB=430.0;AC=4;AN=4;AF=1.0;RO=0;AO=430;PRO=0.0;PAO=0.0;QR=0;QA=16375;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=204;SAR=226;SRP=0.0;SAP=5.45447;AB=0.0;ABP=0.0;RUN=1;RPP=3.1921;RPPR=0.0;RPL=212.0;RPR=218.0;EPP=7.55524;EPPR=0.0;DPRA=0.0;ODDS=71.6913;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988372;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.205;SOR=0.795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:108:4113:-370.19,-29.2601,0.0:106:100:106:0,104:4234,312,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:321:0:0:322:12262:-1102.89,-87.1931,0.0:321:100:321:0,321:13652,951,0:.:1:1:.:.:.:-0.0108768
chr6	127465788	.	G	GTTTTTTTGTTTTTT	3183.57	REJECT	SOMATIC;NS=2;DP=9;DPB=90.6111;AC=1;AN=3;AF=0.25;RO=0;AO=2;PRO=28.0;PAO=57.0;QR=0;QA=55;PQR=949.667;PQA=1680.67;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.4;ABP=3.44459;RUN=1;RPP=3.0103;RPPR=0.0;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=0.0;DPRA=1.25;ODDS=1.60669;GTI=0;TYPE=ins;CIGAR=1M14I17M;NUMALT=2;MEANALT=3.0;LEN=14;MQM=50.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.04949:4:0:0:0:0:-64.924,-5.23762,-3.07057:0:0:1:.:.:.:.:.:.:-0.00526209	./1:9.2532:5:0:0:2:55:-259.081,-27.3604,-5.22875:2:50:4:.:.:1:.:.:.:-0.0108768
chr6	127465788	.	G	GTTTTTTTGTTTTTTT	3183.57	REJECT	NS=2;DP=20;DPB=90.6111;AC=3;AN=3;AF=0.875;RO=0;AO=3;PRO=28.0;PAO=57.0;QR=0;QA=104;PQR=949.667;PQA=1680.67;SRF=0;SRR=0;SAF=3;SAR=0;SRP=0.0;SAP=9.52472;AB=0.4;ABP=3.44459;RUN=1;RPP=9.52472;RPPR=0.0;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=0.0;DPRA=0.0;ODDS=1.60669;GTI=0;TYPE=ins;CIGAR=1M15I17M;NUMALT=2;MEANALT=3.5;LEN=15;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=65.905;QD=24.13;SOR=0.86	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:42.024745:15:0:0:1:34:-64.924,-2.43885,0.0:13:100:13:0,26:1090,76,0:1:.:1:.:.:.:-0.00526209	./1:54.1266:66:0:0:2:70:-259.081,-26.007,-3.86554:45:75:46:0,88:9271,265,0:.:1:1:.:.:.:-0.0108768
chr6	127467444	.	GA	G	8264.885	REJECT	NS=2;DP=273;DPB=346.167;AC=4;AN=4;AF=1.0;RO=7;AO=250;PRO=63.5;PAO=106.5;QR=264;QA=9208;PQR=2259.0;PQA=3903.0;SRF=5;SRR=2;SAF=118;SAR=132;SRP=5.80219;SAP=4.71273;AB=0.0;ABP=0.0;RUN=1;RPP=4.26107;RPPR=3.32051;RPL=119.0;RPR=131.0;EPP=6.48466;EPPR=5.80219;DPRA=0.0;ODDS=38.7958;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=1;MEANALT=5.5;LEN=1;MQM=60.08;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.059;FS=1.382;MLEAC=2;MLEAF=1.0;MQ=60.375;MQRankSum=-0.3175;QD=24.275;RPA=10,9;RU=A;ReadPosRankSum=0.055;SOR=0.6745;STR;ClippingRankSum=-0.43	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.025:61:1:39:53:1910:-205.858,-14.0707,0.0:58:97:60:2,64:1793,159,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:245:6:225:197:7298:-746.646,-37.8499,0.0:220:96:228:10,244:7066,491,0:.:1:1:.:.:.:-0.0108768
chr6	127468188	.	G	A	12215.3	REJECT	NS=2;DP=352;DPB=409.0;AC=4;AN=4;AF=1.0;RO=1;AO=404;PRO=0.0;PAO=0.0;QR=34;QA=14478;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=188;SAR=216;SRP=5.18177;SAP=7.22425;AB=0.0;ABP=0.0;RUN=1;RPP=3.0963;RPPR=5.18177;RPL=200.0;RPR=204.0;EPP=3.0963;EPPR=5.18177;DPRA=0.0;ODDS=74.6254;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.089;Dels=0.0;FS=0.0;HaplotypeScore=7.8365;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.232;QD=30.21;ReadPosRankSum=0.899;SOR=0.653	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:113:4086:-367.711,-30.5343,0.0:113:100:113:0,113:4505,337,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:295:1:34:291:10392:-931.305,-75.4727,0.0:291:100:292:1,291:11506,801,0:.:1:1:.:.:.:-0.0108768
chr6	127468274	.	A	C	13086.7	REJECT	NS=2;DP=346;DPB=409.0;AC=4;AN=4;AF=1.0;RO=0;AO=409;PRO=0.0;PAO=0.0;QR=0;QA=15649;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=184;SRP=0.0;SAP=11.9351;AB=0.0;ABP=0.0;RUN=1;RPP=3.14303;RPPR=0.0;RPL=207.0;RPR=202.0;EPP=5.81888;EPPR=0.0;DPRA=0.0;ODDS=80.7977;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992665;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9662;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.155;SOR=0.866	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:122:0:0:124:4742:-426.364,-33.2149,0.0:122:100:122:0,120:5032,361,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:284:0:0:285:10907:-981.09,-77.202,0.0:284:100:284:0,283:12181,849,0:.:1:1:.:.:.:-0.0108768
chr6	127476516	.	G	A	15219.0	REJECT	NS=2;DP=403;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=456;PRO=0.0;PAO=0.0;QR=0;QA=17345;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=228;SAR=228;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=228.0;RPR=228.0;EPP=10.6295;EPPR=0.0;DPRA=0.0;ODDS=70.414;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993421;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.88;SOR=0.7205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:106:4009:-360.824,-28.7053,0.0:106:100:106:0,106:4460,318,0:1:.:1:.:.:.:-0.00526209	1/1:129.501:350:0:0:350:13336:-1199.04,-94.3572,0.0:350:100:350:0,350:14918,1032,0:.:1:1:.:.:.:-0.0108768
chr6	128297950	.	G	GA	253.169	REJECT	NS=2;DP=200;DPB=229.444;AC=2;AN=4;AF=0.5;RO=149;AO=26;PRO=33.3333;PAO=22.3333;QR=5591;QA=860;PQR=1178.17;PQA=754.167;SRF=43;SRR=106;SAF=16;SAR=10;SRP=60.8531;SAP=6.01695;AB=0.13;ABP=240.83;RUN=1;RPP=36.4176;RPPR=93.9644;RPL=23.0;RPR=3.0;EPP=4.34659;EPPR=38.0016;DPRA=0.0;ODDS=1.38899;GTI=1;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.3846;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986577;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.966759:53:42:1545:5:167:-1.21065,0.0,-138.164:5:10:49:.:.:1:.:.:.:-0.00526209	0/1:135.641:147:107:4046:21:693:-32.1596,0.0,-359.289:21:15:139:.:.:1:.:.:.:-0.0108768
chr6	128297950	.	GA	G	253.169	REJECT	NS=2;DP=200;DPB=229.444;AC=2;AN=2;AF=0.0;RO=149;AO=13;PRO=33.3333;PAO=18.3333;QR=5591;QA=427;PQR=1178.17;PQA=627.667;SRF=43;SRR=106;SAF=4;SAR=9;SRP=60.8531;SAP=7.18621;AB=0.065;ABP=331.728;RUN=1;RPP=23.2217;RPPR=93.9644;RPL=12.0;RPR=1.0;EPP=11.1951;EPPR=38.0016;DPRA=0.0;ODDS=1.38899;GTI=1;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986577;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.966759:53:42:1545:2:73:-1.21065,-8.19712,-153.469:2:4:49:.:.:1:.:.:.:-0.00526209	./1:135.641:147:107:4046:11:354:-32.1596,-35.5304,-404.431:11:8:139:.:.:1:.:.:.:-0.0108768
chr6	128330249	.	T	C	4941.995000000001	REJECT	NS=2;DP=224;DPB=254.0;AC=3;AN=4;AF=0.75;RO=77;AO=177;PRO=0.0;PAO=0.0;QR=2977;QA=6868;PQR=0.0;PQA=0.0;SRF=54;SRR=23;SAF=132;SAR=45;SRP=30.1114;SAP=95.8683;AB=0.603093;ABP=20.9194;RUN=1;RPP=83.502;RPPR=41.6174;RPL=48.0;RPR=129.0;EPP=4.49475;EPPR=3.0385;DPRA=0.0;ODDS=38.4505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988701;PAIREDR=0.987013;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.596;Dels=0.0;FS=0.2975;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.133;QD=25.92;ReadPosRankSum=1.39;SOR=1.7335	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.237:59:0:0:60:2331:-209.966,-16.2729,0.0:59:100:59:0,59:2483,177,0:1:.:1:.:.:.:-0.00526209	0/1:129.501:194:77:2977:117:4537:-355.594,0.0,-215.264:117:60:194:77,117:4493,0,2763:.:1:1:.:.:.:-0.0108768
chr6	128330423	.	T	TA	193.091	REJECT	NS=2;DP=206;DPB=227.562;AC=2;AN=2;AF=0.0;RO=152;AO=14;PRO=21.6667;PAO=14.6667;QR=5650;QA=459;PQR=789.0;PQA=513.0;SRF=24;SRR=128;SAF=3;SAR=11;SRP=157.528;SAP=12.937;AB=0.0679612;ABP=336.995;RUN=1;RPP=8.59409;RPPR=54.4399;RPL=10.0;RPR=4.0;EPP=3.0103;EPPR=8.7247;DPRA=0.0;ODDS=19.838;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.1549:47:35:1289:2:76:-9.23701,-12.7006,-121.977:2:5:43:.:.:1:.:.:.:-0.00526209	./1:132.192:159:117:4361:12:383:-17.852,-19.0633,-397.261:12:8:145:.:.:1:.:.:.:-0.0108768
chr6	128330423	.	TA	T	193.091	REJECT	NS=2;DP=206;DPB=227.562;AC=2;AN=4;AF=0.5;RO=152;AO=22;PRO=21.6667;PAO=14.6667;QR=5650;QA=792;PQR=789.0;PQA=533.0;SRF=24;SRR=128;SAF=3;SAR=19;SRP=157.528;SAP=28.2783;AB=0.106796;ABP=279.652;RUN=1;RPP=4.58955;RPPR=54.4399;RPL=13.0;RPR=9.0;EPP=6.56362;EPPR=8.7247;DPRA=0.0;ODDS=19.838;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:86.1549:47:35:1289:6:198:-9.23701,0.0,-114.593:6:14:43:.:.:1:.:.:.:-0.00526209	0/1:132.192:159:117:4361:16:594:-17.852,0.0,-383.38:16:11:145:.:.:1:.:.:.:-0.0108768
chr6	128385956	.	GA	G	1496.16	PASS	SOMATIC;NS=2;DP=230;DPB=272.312;AC=1;AN=4;AF=0.25;RO=154;AO=61;PRO=52.0;PAO=42.0;QR=5800;QA=2234;PQR=1907.0;PQA=1556.0;SRF=40;SRR=114;SAF=12;SAR=49;SRP=80.2245;SAP=51.7438;AB=0.345238;ABP=37.9607;RUN=1;RPP=15.8611;RPPR=41.138;RPL=40.0;RPR=21.0;EPP=3.90025;EPPR=8.65049;DPRA=0.0;ODDS=10.4632;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.1639;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.876;FS=4.401;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.505;QD=6.51;RPA=10,9;RU=A;ReadPosRankSum=-0.574;SOR=1.122;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:45.441:62:56:2123:3:113:0.0,-4.57071,-197.1:3:5:59:.:.:.:.:0:.:.:.:-0.00526209	0/1:129.501:190:98:3677:58:2121:-161.423,0.0,-316.931:61:36:169:119,64:1423,0,2819:.:1:1:.:.:.:-0.0108768
chr6	128388799	.	G	T	2121.35	REJECT	NS=2;DP=356;DPB=408.0;AC=2;AN=4;AF=0.5;RO=307;AO=100;PRO=0.0;PAO=0.0;QR=11429;QA=3638;PQR=0.0;PQA=0.0;SRF=165;SRR=142;SAF=53;SAR=47;SRP=6.75202;SAP=3.79203;AB=0.245098;ABP=233.272;RUN=1;RPP=3.35774;RPPR=3.18713;RPL=48.0;RPR=52.0;EPP=5.18177;EPPR=3.07396;DPRA=0.0;ODDS=79.0965;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9544;PAIRED=0.99;PAIREDR=0.983713;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.3335;Dels=0.0;FS=1.153;HaplotypeScore=3.9653;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=-0.438;QD=11.405;ReadPosRankSum=0.525;SOR=0.8765;ClippingRankSum=-0.099	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:38:1437:64:2346:-183.555,0.0,-101.721:64:64:100:35,64:2174,0,1147:1:.:1:.:.:.:-0.00526209	0/1:129.501:304:269:9992:36:1292:-34.5057,0.0,-816.189:36:12:304:268,36:566,0,10169:.:1:1:.:.:.:-0.0108768
chr6	128403745	.	A	G	1489.275	REJECT	NS=2;DP=320;DPB=362.0;AC=2;AN=4;AF=0.5;RO=277;AO=85;PRO=0.0;PAO=0.0;QR=10591;QA=3168;PQR=0.0;PQA=0.0;SRF=81;SRR=196;SAF=23;SAR=62;SRP=106.684;SAP=41.8669;AB=0.234807;ABP=224.141;RUN=1;RPP=34.305;RPPR=6.46741;RPL=60.0;RPR=25.0;EPP=5.07959;EPPR=11.5472;DPRA=0.0;ODDS=185.696;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988235;PAIREDR=0.99278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.112;Dels=0.0;FS=0.4595;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.345;QD=9.72;ReadPosRankSum=0.487;SOR=0.752;ClippingRankSum=-0.054	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:47:1766:36:1378:-101.586,0.0,-136.494:35:43:81:44,35:1265,0,1609:1:.:1:.:.:.:-0.00526209	0/1:129.501:279:230:8825:49:1790:-85.459,0.0,-718.259:49:18:279:230,49:1140,0,9039:.:1:1:.:.:.:-0.0108768
chr6	128505804	.	A	C	1310.435	REJECT	NS=2;DP=346;DPB=389.0;AC=2;AN=4;AF=0.5;RO=318;AO=71;PRO=0.0;PAO=0.0;QR=12261;QA=2749;PQR=0.0;PQA=0.0;SRF=140;SRR=178;SAF=33;SAR=38;SRP=12.8707;SAP=3.7749;AB=0.182519;ABP=343.574;RUN=1;RPP=3.28556;RPPR=4.7584;RPL=37.0;RPR=34.0;EPP=3.04088;EPPR=3.44733;DPRA=0.0;ODDS=82.1836;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6135;Dels=0.0;FS=1.2475;HaplotypeScore=2.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1865;QD=8.555;ReadPosRankSum=0.3945;SOR=0.6615;ClippingRankSum=-0.485	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:47:1725:37:1424:-105.457,0.0,-132.544:37:44:83:45,37:1284,0,1560:1:.:1:.:.:.:-0.00526209	0/1:129.501:304:271:10536:34:1325:-36.5352,0.0,-865.048:34:11:304:269,34:575,0,10832:.:1:1:.:.:.:-0.0108768
chr6	129004492	.	A	G	1271.47	REJECT	NS=2;DP=240;DPB=277.0;AC=2;AN=4;AF=0.5;RO=214;AO=63;PRO=0.0;PAO=0.0;QR=8285;QA=2376;PQR=0.0;PQA=0.0;SRF=157;SRR=57;SAF=49;SAR=14;SRP=104.481;SAP=45.2334;AB=0.227437;ABP=181.753;RUN=1;RPP=21.2438;RPPR=67.9515;RPL=20.0;RPR=43.0;EPP=4.69922;EPPR=3.37559;DPRA=0.0;ODDS=41.1182;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984127;PAIREDR=0.985981;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.049;Dels=0.0;FS=7.4975;HaplotypeScore=4.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.2445;QD=10.7;ReadPosRankSum=0.6435;SOR=0.982;ClippingRankSum=0.034	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:34:1313:40:1513:-116.178,0.0,-98.1779:39:54:73:33,39:1447,0,1181:1:.:1:.:.:.:-0.00526209	0/1:129.501:203:180:6972:23:863:-22.6633,0.0,-572.195:23:11:203:180,23:371,0,7167:.:1:1:.:.:.:-0.0108768
chr6	132017457	.	C	T	1932.41	REJECT	NS=2;DP=362;DPB=422.0;AC=2;AN=4;AF=0.5;RO=324;AO=97;PRO=0.0;PAO=0.0;QR=12321;QA=3647;PQR=0.0;PQA=0.0;SRF=182;SRR=142;SAF=50;SAR=47;SRP=13.7336;SAP=3.21178;AB=0.229858;ABP=270.503;RUN=1;RPP=3.03269;RPPR=15.9855;RPL=49.0;RPR=48.0;EPP=19.3299;EPPR=11.6962;DPRA=0.0;ODDS=120.647;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.996914;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.431;Dels=0.0;FS=3.813;HaplotypeScore=7.7766;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6595;QD=8.74;ReadPosRankSum=0.316;SOR=0.798;ClippingRankSum=-0.224	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.1825:119:63:2426:57:2141:-160.172,0.0,-185.818:56:47:119:62,56:1824,0,2214:1:.:1:.:.:.:-0.00526209	0/1:121.1825:302:261:9895:40:1506:-53.9707,0.0,-808.52:40:13:301:261,40:788,0,10148:.:1:1:.:.:.:-0.0108768
chr6	135522348	.	AT	A	6620.105	REJECT	NS=2;DP=298;DPB=352.933;AC=2;AN=4;AF=0.5;RO=68;AO=242;PRO=50.0;PAO=52.0;QR=2533;QA=8998;PQR=1734.5;PQA=1819.5;SRF=43;SRR=25;SAF=127;SAR=115;SRP=13.3567;SAP=4.30242;AB=0.751553;ABP=179.992;RUN=1;RPP=15.9674;RPPR=13.3567;RPL=102.0;RPR=140.0;EPP=10.0452;EPPR=5.05404;DPRA=0.0;ODDS=126.461;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.124;MQMR=60.0;PAIRED=0.991736;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.658;FS=10.455;MLEAC=1;MLEAF=0.5;MQ=60.215;MQRankSum=0.3615;QD=16.265;RPA=9,8;RU=T;ReadPosRankSum=0.7585;SOR=0.5885;STR;ClippingRankSum=0.166	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0165:85:35:1296:46:1697:-135.129,0.0,-105.709:46:55:84:41,46:1125,0,896:1:.:1:.:.:.:-0.00526209	0/1:120.0165:256:33:1237:196:7301:-616.218,0.0,-56.5327:201:84:238:41,206:5847,0,432:.:1:1:.:.:.:-0.0108768
chr6	135522682	.	A	G	12140.4	REJECT	NS=2;DP=441;DPB=512.0;AC=2;AN=4;AF=0.5;RO=118;AO=394;PRO=0.0;PAO=0.0;QR=4505;QA=15114;PQR=0.0;PQA=0.0;SRF=56;SRR=62;SAF=204;SAR=190;SRP=3.67278;SAP=4.09052;AB=0.769531;ABP=326.085;RUN=1;RPP=3.80393;RPPR=4.18805;RPL=203.0;RPR=191.0;EPP=3.80393;EPPR=3.0103;DPRA=0.0;ODDS=202.876;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9898;MQMR=60.0;PAIRED=0.992386;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7205;Dels=0.0;FS=3.278;HaplotypeScore=3.8982;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0075;QD=26.185;ReadPosRankSum=-0.334;SOR=0.7855;ClippingRankSum=1.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.876:139:63:2395:77:2906:-223.573,0.0,-177.601:77:55:139:61,77:2617,0,2113:1:.:1:.:.:.:-0.00526209	0/1:119.876:371:55:2110:317:12208:-997.222,0.0,-89.0312:316:85:371:55,316:12497,0,1250:.:1:1:.:.:.:-0.0108768
chr6	135522939	.	T	C	11588.5	REJECT	NS=2;DP=418;DPB=485.0;AC=2;AN=4;AF=0.5;RO=112;AO=373;PRO=0.0;PAO=0.0;QR=4355;QA=14434;PQR=0.0;PQA=0.0;SRF=60;SRR=52;SAF=170;SAR=203;SRP=4.25114;SAP=9.35007;AB=0.769072;ABP=308.006;RUN=1;RPP=3.15584;RPPR=16.1167;RPL=184.0;RPR=189.0;EPP=12.7965;EPPR=3.08785;DPRA=0.0;ODDS=194.55;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997319;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.979;Dels=0.0;FS=4.0975;HaplotypeScore=4.898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.153;QD=26.805;ReadPosRankSum=-0.058;SOR=0.723;ClippingRankSum=0.176	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.626:132:60:2332:72:2768:-213.317,0.0,-174.079:72:55:132:60,72:2621,0,2173:1:.:1:.:.:.:-0.00526209	0/1:119.626:352:52:2023:301:11666:-953.615,0.0,-86.3349:300:85:352:52,300:11987,0,1218:.:1:1:.:.:.:-0.0108768
chr6	135523583	.	T	C	3968.72	REJECT	NS=2;DP=151;DPB=175.0;AC=2;AN=4;AF=0.5;RO=40;AO=135;PRO=0.0;PAO=0.0;QR=1550;QA=5133;PQR=0.0;PQA=0.0;SRF=8;SRR=32;SAF=26;SAR=109;SRP=34.2795;SAP=113.82;AB=0.771429;ABP=114.996;RUN=1;RPP=4.31318;RPPR=3.22745;RPL=72.0;RPR=63.0;EPP=3.02638;EPPR=3.22745;DPRA=0.0;ODDS=52.1958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9481;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.506;Dels=0.0;FS=0.0;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=59.935;MQRankSum=-0.608;QD=26.07;ReadPosRankSum=0.3385;SOR=0.722;ClippingRankSum=-0.867	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:48:23:892:25:952:-72.7584,0.0,-67.3596:25:52:48:23,25:927,0,857:1:.:1:.:.:.:-0.00526209	0/1:129.501:127:17:658:110:4181:-341.848,0.0,-24.8222:110:87:127:17,110:4272,0,366:.:1:1:.:.:.:-0.0108768
chr6	135523774	.	A	G	4885.01	REJECT	NS=2;DP=183;DPB=216.0;AC=2;AN=4;AF=0.5;RO=49;AO=167;PRO=0.0;PAO=0.0;QR=1874;QA=6347;PQR=0.0;PQA=0.0;SRF=39;SRR=10;SAF=136;SAR=31;SRP=40.2799;SAP=146.366;AB=0.773148;ABP=142.99;RUN=1;RPP=20.8112;RPPR=8.37251;RPL=65.0;RPR=102.0;EPP=4.58364;EPPR=5.18177;DPRA=0.0;ODDS=53.0167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.8922;MQMR=59.7551;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.657;Dels=0.0;FS=1.9345;HaplotypeScore=3.9325;MLEAC=1;MLEAF=0.5;MQ=59.19;MQRankSum=-0.1635;QD=26.565;ReadPosRankSum=0.2265;SOR=0.7735;ClippingRankSum=0.732	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.3315:65:30:1139:36:1346:-103.197,0.0,-84.7057:36:55:65:29,36:1276,0,1016:1:.:1:.:.:.:-0.00526209	0/1:121.3315:150:19:735:131:5001:-408.539,0.0,-25.4754:131:87:150:19,131:5118,0,383:.:1:1:.:.:.:-0.0108768
chr6	135524516	.	A	G	10392.4	REJECT	NS=2;DP=390;DPB=449.0;AC=2;AN=4;AF=0.5;RO=100;AO=349;PRO=0.0;PAO=0.0;QR=3796;QA=12995;PQR=0.0;PQA=0.0;SRF=47;SRR=53;SAF=199;SAR=150;SRP=3.79203;SAP=17.9493;AB=0.777283;ABP=302.862;RUN=1;RPP=5.75419;RPPR=4.40004;RPL=185.0;RPR=164.0;EPP=3.16585;EPPR=3.79203;DPRA=0.0;ODDS=150.574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2579;MQMR=60.0;PAIRED=0.994269;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9085;Dels=0.0;FS=6.3875;HaplotypeScore=198.479;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.0075;QD=25.925;ReadPosRankSum=-0.9425;SOR=0.782;ClippingRankSum=1.029	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:117:55:2062:60:2261:-172.353,0.0,-154.448:63:53:117:53,66:2270,0,1846:1:.:1:.:.:.:-0.00526209	0/1:129.501:333:45:1734:289:10734:-875.076,0.0,-65.6079:288:86:333:45,287:10989,0,970:.:1:1:.:.:.:-0.0108768
chr6	135524520	.	T	TTGG	5926.12	REJECT	NS=2;DP=321;DPB=453.28;AC=2;AN=4;AF=0.5;RO=82;AO=222;PRO=89.0;PAO=101.0;QR=3044;QA=7197;PQR=3094.0;PQA=3528.0;SRF=38;SRR=44;SAF=128;SAR=94;SRP=3.96363;SAP=14.3176;AB=0.685185;ABP=99.5202;RUN=1;RPP=14.3176;RPPR=15.8273;RPL=128.0;RPR=94.0;EPP=3.98844;EPPR=3.11623;DPRA=0.0;ODDS=185.647;GTI=0;TYPE=ins;CIGAR=1M3I24M;NUMALT=1;MEANALT=10.5;LEN=3;MQM=60.0;MQMR=59.8659;PAIRED=0.995495;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5485;FS=7.0835;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=-0.301;QD=22.315;RPA=7,8;RU=TGG;ReadPosRankSum=-0.7355;SOR=0.812;STR;ClippingRankSum=-1.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:39:1432:39:1229:-101.843,0.0,-106.733:48:53:89:43,57:1909,0,1622:1:.:1:.:.:.:-0.00526209	0/1:129.501:277:43:1612:183:5968:-499.242,0.0,-81.8855:190:81:233:44,197:9227,0,1484:.:1:1:.:.:.:-0.0108768
chr6	135524553	.	C	T	10902.3	REJECT	NS=2;DP=416;DPB=481.0;AC=2;AN=4;AF=0.5;RO=102;AO=376;PRO=0.0;PAO=0.0;QR=3846;QA=13668;PQR=0.0;PQA=0.0;SRF=47;SRR=55;SAF=176;SAR=200;SRP=4.37279;SAP=6.33681;AB=0.781705;ABP=334.559;RUN=1;RPP=4.48875;RPPR=7.18293;RPL=196.0;RPR=180.0;EPP=32.9489;EPPR=6.07591;DPRA=0.0;ODDS=118.228;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9973;MQMR=60.0;PAIRED=0.992021;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.5825;Dels=0.0;FS=3.5415;HaplotypeScore=11.6266;MLEAC=1;MLEAF=0.5;MQ=60.01;MQRankSum=0.634;QD=25.4;ReadPosRankSum=0.773;SOR=0.624;ClippingRankSum=-0.673	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:125:58:2207:70:2521:-192.226,0.0,-163.961:69:55:125:54,68:2291,0,1797:1:.:1:.:.:.:-0.00526209	0/1:129.501:352:44:1639:306:11147:-907.943,0.0,-52.6811:305:87:349:44,305:11433,0,782:.:1:1:.:.:.:-0.0108768
chr6	135525396	.	G	T	10411.1	REJECT	NS=2;DP=395;DPB=451.0;AC=2;AN=4;AF=0.5;RO=112;AO=338;PRO=0.0;PAO=0.0;QR=4213;QA=13033;PQR=0.0;PQA=0.0;SRF=42;SRR=70;SAF=138;SAR=200;SRP=18.2106;SAP=27.706;AB=0.749446;ABP=246.759;RUN=1;RPP=4.65497;RPPR=3.32051;RPL=177.0;RPR=161.0;EPP=3.0103;EPPR=5.80219;DPRA=0.0;ODDS=215.366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.8728;MQMR=60.0;PAIRED=0.982249;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6045;Dels=0.0;FS=1.5185;HaplotypeScore=9.7387;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.774;QD=24.35;ReadPosRankSum=-0.003;SOR=0.542;ClippingRankSum=-0.221	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:58:2132:53:2026:-152.296,0.0,-161.816:52:48:110:57,52:1725,0,2009:1:.:1:.:.:.:-0.00526209	0/1:129.501:340:54:2081:285:11007:-897.84,0.0,-95.3686:285:84:339:54,285:11339,0,1306:.:1:1:.:.:.:-0.0108768
chr6	135525737	.	A	G	5774.4	REJECT	NS=2;DP=220;DPB=262.0;AC=2;AN=4;AF=0.5;RO=67;AO=195;PRO=0.0;PAO=0.0;QR=2539;QA=7373;PQR=0.0;PQA=0.0;SRF=51;SRR=16;SAF=133;SAR=62;SRP=42.7126;SAP=59.1456;AB=0.744275;ABP=138.802;RUN=1;RPP=34.2906;RPPR=3.04271;RPL=71.0;RPR=124.0;EPP=4.35773;EPPR=12.3768;DPRA=0.0;ODDS=85.7879;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989744;PAIREDR=0.985075;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1115;Dels=0.0;FS=3.325;HaplotypeScore=1.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.37;QD=25.04;ReadPosRankSum=-0.3635;SOR=0.4815;ClippingRankSum=-0.357	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:41:1562:42:1588:-120.486,0.0,-118.135:42:51:82:40,42:1456,0,1439:1:.:1:.:.:.:-0.00526209	0/1:129.501:179:26:977:153:5785:-471.986,0.0,-39.4519:153:85:179:26,153:5877,0,563:.:1:1:.:.:.:-0.0108768
chr6	135525927	.	T	C	7489.06	REJECT	NS=2;DP=299;DPB=347.0;AC=2;AN=4;AF=0.5;RO=94;AO=253;PRO=0.0;PAO=0.0;QR=3584;QA=9480;PQR=0.0;PQA=0.0;SRF=30;SRR=64;SAF=100;SAR=153;SRP=29.7148;SAP=27.1197;AB=0.729107;ABP=161.215;RUN=1;RPP=14.7603;RPPR=7.53805;RPL=145.0;RPR=108.0;EPP=4.94145;EPPR=3.1027;DPRA=0.0;ODDS=192.14;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.7447;PAIRED=0.992095;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.542;Dels=0.0;FS=13.6715;HaplotypeScore=10.7592;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3425;QD=23.705;ReadPosRankSum=-0.2965;SOR=0.6285;ClippingRankSum=-0.267	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:50:1895:45:1568:-115.421,0.0,-145.288:43:47:92:47,42:1392,0,1679:1:.:1:.:.:.:-0.00526209	0/1:129.501:251:44:1689:208:7912:-643.472,0.0,-83.6887:207:82:251:44,207:8084,0,1149:.:1:1:.:.:.:-0.0108768
chr6	135526239	.	G	A	8313.37	REJECT	NS=2;DP=323;DPB=369.0;AC=2;AN=4;AF=0.5;RO=91;AO=278;PRO=0.0;PAO=0.0;QR=3502;QA=10621;PQR=0.0;PQA=0.0;SRF=66;SRR=25;SAF=195;SAR=83;SRP=43.1229;SAP=100.992;AB=0.753388;ABP=208.794;RUN=1;RPP=78.0276;RPPR=17.9243;RPL=90.0;RPR=188.0;EPP=5.00993;EPPR=5.89764;DPRA=0.0;ODDS=118.256;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992806;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.207;Dels=0.0;FS=2.8015;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.511;QD=23.075;ReadPosRankSum=-0.373;SOR=0.605;ClippingRankSum=-1.575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:54:2063:36:1307:-93.2723,0.0,-161.351:35:39:89:54,35:1087,0,1956:1:.:1:.:.:.:-0.00526209	0/1:129.501:278:37:1439:242:9314:-762.207,0.0,-53.8581:241:87:278:37,241:9551,0,785:.:1:1:.:.:.:-0.0108768
chr6	135526367	.	C	T	563.577	REJECT	NS=2;DP=273;DPB=396.0;AC=2;AN=2;AF=0.0;RO=123;AO=14;PRO=71.4167;PAO=25.9333;QR=4383;QA=205;PQR=2510.08;PQA=855.817;SRF=53;SRR=70;SAF=0;SAR=14;SRP=8.11238;SAP=33.4109;AB=0.0512821;ABP=480.456;RUN=1;RPP=3.0103;RPPR=3.16919;RPL=7.0;RPR=7.0;EPP=3.0103;EPPR=8.11238;DPRA=0.0;ODDS=22.0627;GTI=0;TYPE=snp;CIGAR=1X26M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=58.7143;MQMR=60.0;PAIRED=0.928571;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:95.5507:64:29:1003:5:58:-11.654,-45.4486,-449.508:5:9:57:.:.:1:.:.:.:-0.00526209	./1:160.002:209:94:3380:9:147:-50.0884,-160.924,-1505.55:9:5:176:.:.:1:.:.:.:-0.0108768
chr6	135526367	.	C	CT	563.577	REJECT	NS=2;DP=273;DPB=396.0;AC=2;AN=2;AF=0.0;RO=123;AO=21;PRO=71.4167;PAO=48.9167;QR=4383;QA=534;PQR=2510.08;PQA=1615.58;SRF=53;SRR=70;SAF=8;SAR=13;SRP=8.11238;SAP=5.59539;AB=0.0769231;ABP=427.45;RUN=1;RPP=3.94093;RPPR=3.16919;RPL=12.0;RPR=9.0;EPP=8.07707;EPPR=8.11238;DPRA=0.0;ODDS=22.0627;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=59.9048;MQMR=60.0;PAIRED=0.952381;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:95.5507:64:29:1003:7:152:-11.654,-10.1616,-117.061:7:12:57:.:.:1:.:.:.:-0.00526209	./1:160.002:209:94:3380:14:382:-50.0884,-52.4894,-463.746:14:8:176:.:.:1:.:.:.:-0.0108768
chr6	135526367	.	CT	C	563.577	REJECT	NS=2;DP=273;DPB=396.0;AC=2;AN=4;AF=0.5;RO=123;AO=43;PRO=71.4167;PAO=52.5833;QR=4383;QA=1141;PQR=2510.08;PQA=1753.58;SRF=53;SRR=70;SAF=18;SAR=25;SRP=8.11238;SAP=5.48477;AB=0.157509;ABP=281.158;RUN=1;RPP=3.46479;RPPR=3.16919;RPL=23.0;RPR=20.0;EPP=3.46479;EPPR=8.11238;DPRA=0.0;ODDS=22.0627;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:95.5507:64:29:1003:6:158:-11.654,0.0,-131.676:6:11:57:.:.:1:.:.:.:-0.00526209	0/1:160.002:209:94:3380:37:983:-50.0884,0.0,-494.748:37:21:176:.:.:1:.:.:.:-0.0108768
chr6	135526367	.	CTT	C	563.577	REJECT	NS=2;DP=273;DPB=396.0;AC=2;AN=2;AF=0.0;RO=123;AO=15;PRO=71.4167;PAO=38.8333;QR=4383;QA=414;PQR=2510.08;PQA=1329.33;SRF=53;SRR=70;SAF=8;SAR=7;SRP=8.11238;SAP=3.15506;AB=0.0549451;ABP=472.693;RUN=1;RPP=10.1038;RPPR=3.16919;RPL=11.0;RPR=4.0;EPP=4.31318;EPPR=8.11238;DPRA=0.0;ODDS=22.0627;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=5;MEANALT=19.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:95.5507:64:29:1003:5:148:-11.654,-9.18386,-141.939:5:9:57:.:.:1:.:.:.:-0.00526209	./1:160.002:209:94:3380:10:266:-50.0884,-86.8352,-721.832:10:6:176:.:.:1:.:.:.:-0.0108768
chr6	135526388	.	A	T	563.577	REJECT	NS=2;DP=273;DPB=396.0;AC=2;AN=2;AF=0.0;RO=123;AO=17;PRO=71.4167;PAO=36.3167;QR=4383;QA=272;PQR=2510.08;PQA=1243.6;SRF=53;SRR=70;SAF=17;SAR=0;SRP=8.11238;SAP=39.9253;AB=0.0622711;ABP=457.357;RUN=1;RPP=6.20364;RPPR=3.16919;RPL=11.0;RPR=6.0;EPP=6.20364;EPPR=8.11238;DPRA=0.0;ODDS=22.0627;GTI=0;TYPE=snp;CIGAR=21M1X5M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:95.5507:64:29:1003:5:80:-11.654,-37.506,-364.387:5:9:57:.:.:1:.:.:.:-0.00526209	./1:160.002:209:94:3380:12:192:-50.0884,-167.037,-1579.74:12:7:176:.:.:1:.:.:.:-0.0108768
chr6	135526768	.	C	T	11562.7	REJECT	NS=2;DP=439;DPB=496.0;AC=2;AN=4;AF=0.5;RO=122;AO=374;PRO=0.0;PAO=0.0;QR=4650;QA=14444;PQR=0.0;PQA=0.0;SRF=57;SRR=65;SAF=176;SAR=198;SRP=4.14943;SAP=5.82044;AB=0.754032;ABP=281.029;RUN=1;RPP=19.9408;RPPR=5.57335;RPL=214.0;RPR=160.0;EPP=4.14829;EPPR=3.0815;DPRA=0.0;ODDS=193.143;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994652;PAIREDR=0.991803;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.548;Dels=0.0;FS=1.807;HaplotypeScore=12.6558;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5005;QD=23.725;ReadPosRankSum=0.19;SOR=0.6335;ClippingRankSum=0.766	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:67:2550:45:1739:-126.156,0.0,-199.168:44:40:111:66,44:1530,0,2330:1:.:1:.:.:.:-0.00526209	0/1:129.501:383:55:2100:329:12705:-1038.66,0.0,-84.8813:328:86:383:55,328:13065,0,1183:.:1:1:.:.:.:-0.0108768
chr6	135527314	.	G	A	13.72	LowQual	SOMATIC;DP=2;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=41.5;QD=6.86;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-2.60133	1/1:1,1:2:3.0:40,3,0:1:50:2:.:1:.:.:.:.:-2.79535
chr6	135528722	.	A	G	9918.85	REJECT	NS=2;DP=365;DPB=417.0;AC=2;AN=4;AF=0.5;RO=93;AO=324;PRO=0.0;PAO=0.0;QR=3632;QA=12359;PQR=0.0;PQA=0.0;SRF=43;SRR=50;SAF=150;SAR=174;SRP=4.15441;SAP=6.8707;AB=0.776978;ABP=280.881;RUN=1;RPP=3.9754;RPPR=4.15441;RPL=168.0;RPR=156.0;EPP=3.9754;EPPR=3.22044;DPRA=0.0;ODDS=175.024;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.9605;Dels=0.0;FS=1.102;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5525;QD=26.12;ReadPosRankSum=-0.985;SOR=0.6425;ClippingRankSum=-1.599	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.688:102:47:1837:57:2157:-165.97,0.0,-137.147:56:54:102:46,55:1928,0,1659:1:.:1:.:.:.:-2.60133	0/1:122.688:313:46:1795:267:10202:-832.855,0.0,-76.6775:267:85:313:46,267:10491,0,1081:.:1:1:.:.:.:-2.79535
chr6	135528875	.	C	T	647.016	REJECT	NS=2;DP=120;DPB=166.955;AC=2;AN=2;AF=0.0;RO=29;AO=16;PRO=24.5667;PAO=2.73333;QR=1035;QA=240;PQR=871.4;PQA=89.9;SRF=6;SRR=23;SAF=0;SAR=16;SRP=24.6501;SAP=37.7539;AB=0.133333;ABP=143.143;RUN=1;RPP=7.89611;RPPR=12.0706;RPL=11.0;RPR=5.0;EPP=7.89611;EPPR=3.08518;DPRA=0.0;ODDS=38.2594;GTI=0;TYPE=snp;CIGAR=1X21M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=58.75;MQMR=59.4483;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.653;Dels=0.01;FS=11.525;HaplotypeScore=116.672;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.036;QD=1.4;ReadPosRankSum=1.414;SOR=2.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.014:32:9:317:2:28:-22.2514,-40.0819,-252.272:2:8:24:.:.:.:.:1:.:.:.:-2.60133	./1:117.507:116:20:718:14:212:-49.1929,-88.0904,-676.128:15:14:109:127,16:233,0,3457:.:1:1:.:.:.:-2.79535
chr6	135528875	.	C	CT	647.016	REJECT	NS=2;DP=120;DPB=166.955;AC=2;AN=4;AF=0.5;RO=29;AO=33;PRO=24.5667;PAO=24.0667;QR=1035;QA=814;PQR=871.4;PQA=840.4;SRF=6;SRR=23;SAF=9;SAR=24;SRP=24.6501;SAP=17.8158;AB=0.275;ABP=55.7771;RUN=1;RPP=6.23461;RPPR=12.0706;RPL=20.0;RPR=13.0;EPP=3.60252;EPPR=3.08518;DPRA=0.0;ODDS=38.2594;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=59.4483;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.5845;FS=1.0995;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-0.707;QD=4.035;RPA=15,16;RU=T;ReadPosRankSum=0.6375;SOR=0.416;STR;ClippingRankSum=0.702	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.507:29:9:317:6:171:-22.2514,0.0,-25.7975:9:35:25:14,12:197,0,226:1:.:1:.:.:.:-2.60133	0/1:117.507:116:20:718:27:643:-49.1929,0.0,-64.351:42:47:86:39,57:719,0,425:.:1:1:.:.:.:-2.79535
chr6	135528875	.	C	TT	647.016	REJECT	NS=2;DP=120;DPB=166.955;AC=2;AN=2;AF=0.0;RO=29;AO=3;PRO=24.5667;PAO=2.73333;QR=1035;QA=30;PQR=871.4;PQA=89.9;SRF=6;SRR=23;SAF=0;SAR=3;SRP=24.6501;SAP=9.52472;AB=0.09375;ABP=48.8827;RUN=1;RPP=3.73412;RPPR=12.0706;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=3.08518;DPRA=0.0;ODDS=38.2594;GTI=0;TYPE=complex;CIGAR=1X1I21M;NUMALT=5;MEANALT=12.0;LEN=23;MQM=62.6667;MQMR=59.4483;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.014:32:9:317:3:30:-22.2514,-40.1731,-252.482:3:13:24:.:.:1:.:.:.:-2.60133	./1:136.014:88:20:718:0:0:-49.1929,-103.388,-694.667:0:0:76:.:.:1:.:.:.:-2.79535
chr6	135528875	.	C	CTT	647.016	REJECT	NS=2;DP=120;DPB=166.955;AC=2;AN=2;AF=0.0;RO=29;AO=11;PRO=24.5667;PAO=21.0667;QR=1035;QA=220;PQR=871.4;PQA=748.4;SRF=6;SRR=23;SAF=1;SAR=10;SRP=24.6501;SAP=19.0002;AB=0.0916667;ABP=176.8;RUN=1;RPP=12.6832;RPPR=12.0706;RPL=9.0;RPR=2.0;EPP=7.94546;EPPR=3.08518;DPRA=0.0;ODDS=38.2594;GTI=0;TYPE=ins;CIGAR=1M2I21M;NUMALT=5;MEANALT=13.0;LEN=2;MQM=59.9091;MQMR=59.4483;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.014:32:9:317:2:50:-22.2514,-15.0481,-42.4568:2:8:24:.:.:1:.:.:.:-2.60133	./1:136.014:88:20:718:9:170:-49.1929,-39.9489,-108.608:9:12:76:.:.:1:.:.:.:-2.79535
chr6	135528875	.	CT	C	647.016	REJECT	NS=2;DP=120;DPB=166.955;AC=2;AN=2;AF=0.0;RO=29;AO=8;PRO=24.5667;PAO=14.8333;QR=1035;QA=243;PQR=871.4;PQA=517.0;SRF=6;SRR=23;SAF=2;SAR=6;SRP=24.6501;SAP=7.35324;AB=0.0666667;ABP=198.732;RUN=1;RPP=12.7819;RPPR=12.0706;RPL=7.0;RPR=1.0;EPP=4.09604;EPPR=3.08518;DPRA=0.0;ODDS=38.2594;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=59.4483;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.014:32:9:317:2:53:-22.2514,-22.9013,-74.5544:2:8:24:.:.:1:.:.:.:-2.60133	./1:136.014:88:20:718:6:190:-49.1929,-51.3329,-249.293:6:8:76:.:.:1:.:.:.:-2.79535
chr6	135529116	.	C	T	467.613	REJECT	NS=2;DP=18;DPB=21.0;AC=3;AN=4;AF=0.75;RO=3;AO=18;PRO=0.0;PAO=0.0;QR=83;QA=639;PQR=0.0;PQA=0.0;SRF=0;SRR=3;SAF=0;SAR=18;SRP=9.52472;SAP=42.0968;AB=0.6;ABP=3.44459;RUN=1;RPP=4.9405;RPPR=3.73412;RPL=7.0;RPR=11.0;EPP=4.9405;EPPR=3.73412;DPRA=0.0;ODDS=4.33518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.123;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=59.66;MQRankSum=-0.906;QD=26.965;ReadPosRankSum=-0.0705;SOR=2.8915;ClippingRankSum=0.727	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23.44215:4:2:69:3:102:-7.99455,0.0,-4.96193:3:67:4:1,3:104,0,28:1:.:1:.:.:.:-2.60133	1/1:41.338:16:1:14:15:537:-47.3354,-3.08504,0.0:15:94:16:1,15:588,42,0:.:1:1:.:.:.:-2.79535
chr6	135529211	.	T	A	49.2151	REJECT	NS=2;DP=9;DPB=9.0;AC=2;AN=4;AF=0.5;RO=4;AO=5;PRO=0.0;PAO=0.0;QR=134;QA=154;PQR=0.0;PQA=0.0;SRF=0;SRR=4;SAF=0;SAR=5;SRP=11.6962;SAP=13.8677;AB=0.555556;ABP=3.25157;RUN=1;RPP=13.8677;RPPR=5.18177;RPL=5.0;RPR=0.0;EPP=13.8677;EPPR=5.18177;DPRA=0.0;ODDS=3.92914;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=47.0;PAIRED=1.0;PAIREDR=0.5;technology.ILLUMINA=1.0;MQ0=1;BaseQRankSum=-0.55;Dels=0.0;FS=0.0;HaplotypeScore=3.9951;MLEAC=1;MLEAF=0.5;MQ=50.48;MQRankSum=0.55;QD=8.85;ReadPosRankSum=0.55;SOR=0.941	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:15.8258:2:1:40:1:38:-3.03546,0.0,-3.22396:1:50:2:.:.:.:.:1:.:.:.:-2.60133	0/1:57.4794:7:3:94:4:116:-8.691,0.0,-6.38472:4:60:7:3,5:99,0,74:.:1:1:.:.:.:-2.79535
chr6	135529561	.	C	T	659.653	REJECT	NS=2;DP=26;DPB=30.0;AC=2;AN=4;AF=0.5;RO=4;AO=26;PRO=0.0;PAO=0.0;QR=147;QA=987;PQR=0.0;PQA=0.0;SRF=4;SRR=0;SAF=26;SAR=0;SRP=11.6962;SAP=59.4686;AB=0.866667;ABP=38.0434;RUN=1;RPP=24.391;RPPR=5.18177;RPL=5.0;RPR=21.0;EPP=24.391;EPPR=5.18177;DPRA=0.0;ODDS=1.93868;GTI=1;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.775;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0575;QD=29.555;ReadPosRankSum=0.72;SOR=2.806;ClippingRankSum=-0.922	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:35.38865:7:2:69:5:198:-16.1582,0.0,-4.37993:5:71:7:2,5:201,0,57:1:.:1:.:.:.:-2.60133	0/1:9.2788745:23:2:78:21:789:-65.0333,0.0,-0.788132:21:91:23:2,21:820,0,18:.:1:1:.:.:.:-2.79535
chr6	135529684	.	G	GT	266.301	REJECT	NS=2;DP=36;DPB=56.16;AC=2;AN=3;AF=0.25;RO=6;AO=10;PRO=15.0833;PAO=16.0833;QR=207;QA=377;PQR=488.083;PQA=528.083;SRF=6;SRR=0;SAF=10;SAR=0;SRP=16.0391;SAP=24.725;AB=0.277778;ABP=18.4519;RUN=1;RPP=3.87889;RPPR=3.0103;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=3.0103;DPRA=0.0;ODDS=0.211229;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.778;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=57.11;MQRankSum=0.889;QD=6.23;RPA=17,18;RU=T;ReadPosRankSum=0.254;SOR=1.802;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.46743:7:2:73:1:39:-2.80066,-0.0897459,-5.8788:1:20:5:.:.:.:.:1:.:.:.:-2.60133	0/1:46.0796:33:4:134:9:338:-30.2553,0.0,-8.28019:15:64:23:7,22:274,0,38:.:1:1:.:.:.:-2.79535
chr6	135529684	.	G	GTT	266.301	REJECT	NS=2;DP=36;DPB=56.16;AC=2;AN=3;AF=0.25;RO=6;AO=3;PRO=15.0833;PAO=15.0833;QR=207;QA=109;PQR=488.083;PQA=488.083;SRF=6;SRR=0;SAF=3;SAR=0;SRP=16.0391;SAP=9.52472;AB=0.0833333;ABP=57.2971;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.0103;DPRA=0.0;ODDS=0.211229;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=3;MEANALT=10.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3.46743:7:2:73:1:40:-2.80066,0.0,-5.78905:1:20:5:.:.:1:.:.:.:-2.60133	./1:54.1592:29:4:134:2:69:-30.2553,-25.665,-36.1159:2:12:17:.:.:1:.:.:.:-2.79535
chr6	135529702	.	A	TT	266.301	REJECT	NS=2;DP=36;DPB=56.16;AC=2;AN=2;AF=0.0;RO=6;AO=3;PRO=15.0833;PAO=8.75;QR=207;QA=55;PQR=488.083;PQA=274.75;SRF=6;SRR=0;SAF=3;SAR=0;SRP=16.0391;SAP=9.52472;AB=0.0833333;ABP=57.2971;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.0103;DPRA=0.0;ODDS=0.211229;GTI=0;TYPE=complex;CIGAR=1M1I17M1X6M;NUMALT=3;MEANALT=10.0;LEN=26;MQM=55.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.46743:7:2:73:1:27:-2.80066,-3.63162,-35.7506:1:20:5:.:.:1:.:.:.:-2.60133	./1:54.1592:29:4:134:2:28:-30.2553,-42.3693,-184.217:2:12:17:.:.:1:.:.:.:-2.79535
chr6	135531451	.	C	G	12596.8	REJECT	NS=2;DP=450;DPB=513.0;AC=2;AN=4;AF=0.5;RO=107;AO=406;PRO=0.0;PAO=0.0;QR=4154;QA=15659;PQR=0.0;PQA=0.0;SRF=57;SRR=50;SAF=229;SAR=177;SRP=4.00471;SAP=17.4725;AB=0.791423;ABP=381.435;RUN=1;RPP=9.19311;RPPR=3.51765;RPL=220.0;RPR=186.0;EPP=15.3331;EPPR=3.51765;DPRA=0.0;ODDS=94.4542;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997537;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2145;Dels=0.0;FS=1.358;HaplotypeScore=9.8979;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4475;QD=23.565;ReadPosRankSum=-0.2265;SOR=0.844;ClippingRankSum=0.675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.007:125:65:2533:61:2312:-173.917,0.0,-193.799:60:48:125:65,60:2055,0,2225:1:.:1:.:.:.:-0.00135401	0/1:121.007:386:42:1621:345:13347:-1095.57,0.0,-40.9782:344:89:386:42,344:13746,0,669:.:1:1:.:.:.:-0.00154183
chr6	135531639	.	G	T	13671.9	REJECT	NS=2;DP=499;DPB=569.0;AC=2;AN=4;AF=0.5;RO=123;AO=445;PRO=0.0;PAO=0.0;QR=4648;QA=17012;PQR=0.0;PQA=0.0;SRF=58;SRR=65;SAF=196;SAR=249;SRP=3.87536;SAP=16.7174;AB=0.782074;ABP=396.245;RUN=1;RPP=13.7896;RPPR=3.45166;RPL=246.0;RPR=199.0;EPP=4.10824;EPPR=8.11238;DPRA=0.0;ODDS=119.758;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9865;MQMR=60.0;PAIRED=0.993258;PAIREDR=0.98374;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4485;Dels=0.0;FS=4.666;HaplotypeScore=8.7367;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.407;QD=23.275;ReadPosRankSum=0.5135;SOR=0.6525;ClippingRankSum=1.609	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.124:136:74:2760:63:2348:-174.212,0.0,-211.267:62:46:135:72,62:2112,0,2431:1:.:1:.:.:.:-0.00135401	0/1:118.124:430:49:1888:382:14664:-1202.11,0.0,-53.0664:381:89:430:49,381:15107,0,836:.:1:1:.:.:.:-0.00154183
chr6	135531800	.	T	C	10358.7	REJECT	NS=2;DP=384;DPB=446.0;AC=2;AN=4;AF=0.5;RO=101;AO=343;PRO=0.0;PAO=0.0;QR=3882;QA=12948;PQR=0.0;PQA=0.0;SRF=46;SRR=55;SAF=190;SAR=153;SRP=4.75178;SAP=11.6772;AB=0.769058;ABP=283.452;RUN=1;RPP=15.8302;RPPR=3.54779;RPL=194.0;RPR=149.0;EPP=3.32051;EPPR=4.06379;DPRA=0.0;ODDS=86.0357;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997085;PAIREDR=0.980198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5895;Dels=0.0;FS=6.8475;HaplotypeScore=5.8795;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3115;QD=25.375;ReadPosRankSum=-0.1125;SOR=0.924;ClippingRankSum=0.276	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.905:122:65:2496:59:2248:-168.702,0.0,-191.043:58:48:122:62,58:2041,0,2140:1:.:1:.:.:.:-0.00135401	0/1:117.905:322:36:1386:284:10700:-875.747,0.0,-38.0803:284:89:320:36,284:11015,0,616:.:1:1:.:.:.:-0.00154183
chr6	135533284	.	T	G	8296.39	REJECT	NS=2;DP=304;DPB=353.0;AC=2;AN=4;AF=0.5;RO=78;AO=275;PRO=0.0;PAO=0.0;QR=3013;QA=10462;PQR=0.0;PQA=0.0;SRF=27;SRR=51;SAF=94;SAR=181;SRP=19.0458;SAP=62.7771;AB=0.779037;ABP=241.743;RUN=1;RPP=9.65106;RPPR=4.01252;RPL=123.0;RPR=152.0;EPP=32.3923;EPPR=7.01917;DPRA=0.0;ODDS=141.707;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.956364;PAIREDR=0.884615;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.342;Dels=0.0;FS=2.935;HaplotypeScore=5.8965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.048;QD=25.97;ReadPosRankSum=0.494;SOR=0.745;ClippingRankSum=-1.789	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:38:1487:42:1586:-121.107,0.0,-112.204:41:52:78:37,40:1438,0,1264:1:.:1:.:.:.:-0.00135401	0/1:129.501:264:40:1526:233:8876:-724.46,0.0,-63.3415:228:86:264:32,224:8756,0,636:.:1:1:.:.:.:-0.00154183
chr6	135534823	.	T	C	5182.32	REJECT	NS=2;DP=143;DPB=167.0;AC=4;AN=4;AF=1.0;RO=0;AO=167;PRO=0.0;PAO=0.0;QR=0;QA=6248;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=37;SAR=130;SRP=0.0;SAP=115.472;AB=0.0;ABP=0.0;RUN=1;RPP=13.9457;RPPR=0.0;RPL=98.0;RPR=69.0;EPP=27.0525;EPPR=0.0;DPRA=0.0;ODDS=33.0507;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8802;MQMR=0.0;PAIRED=0.994012;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=59.93;QD=29.375;SOR=2.299	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.432:45:0:0:46:1739:-156.735,-12.4787,0.0:45:100:45:0,45:1903,135,0:1:.:1:.:.:.:-0.00135401	1/1:129.501:120:0:0:121:4509:-405.526,-32.7374,0.0:120:100:120:0,120:4960,346,0:.:1:1:.:.:.:-0.00154183
chr6	135535018	.	G	A	7692.53	REJECT	NS=2;DP=277;DPB=314.0;AC=2;AN=4;AF=0.5;RO=58;AO=256;PRO=0.0;PAO=0.0;QR=2214;QA=9692;PQR=0.0;PQA=0.0;SRF=39;SRR=19;SAF=163;SAR=93;SRP=17.986;SAP=44.5736;AB=0.815287;ABP=274.126;RUN=1;RPP=65.7455;RPPR=6.75422;RPL=85.0;RPR=171.0;EPP=11.6962;EPPR=12.5947;DPRA=0.0;ODDS=4.7613;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992188;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.964;Dels=0.0;FS=0.4645;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.322;QD=23.62;ReadPosRankSum=0.27;SOR=0.6525;ClippingRankSum=-0.547	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5815:72:38:1445:35:1331:-100.058,0.0,-110.348:34:48:72:37,34:1173,0,1285:1:.:1:.:.:.:-0.00135401	0/1:59.85755:240:20:769:221:8361:-686.832,0.0,-3.93994:220:92:240:20,220:8545,0,160:.:1:1:.:.:.:-0.00154183
chr6	135535240	.	C	T	3880.62	REJECT	NS=2;DP=159;DPB=185.0;AC=2;AN=4;AF=0.5;RO=43;AO=141;PRO=0.0;PAO=0.0;QR=1583;QA=5259;PQR=0.0;PQA=0.0;SRF=5;SRR=38;SAF=17;SAR=124;SRP=58.0041;SAP=179.331;AB=0.762162;ABP=113.45;RUN=1;RPP=43.067;RPPR=4.27278;RPL=96.0;RPR=45.0;EPP=60.3156;EPPR=5.48477;DPRA=0.0;ODDS=58.511;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978723;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1095;Dels=0.0;FS=0.727;HaplotypeScore=1.9947;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5835;QD=26.105;ReadPosRankSum=1.053;SOR=0.7445;ClippingRankSum=-0.353	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:49:24:862:26:1002:-76.7555,0.0,-64.1174:26:53:48:21,26:979,0,709:1:.:1:.:.:.:-0.00135401	0/1:129.501:134:19:721:115:4257:-346.797,0.0,-28.6139:115:86:134:19,115:4313,0,423:.:1:1:.:.:.:-0.00154183
chr6	135535447	.	T	C	6004.35	REJECT	NS=2;DP=235;DPB=266.0;AC=2;AN=4;AF=0.5;RO=59;AO=207;PRO=0.0;PAO=0.0;QR=2138;QA=7909;PQR=0.0;PQA=0.0;SRF=43;SRR=16;SAF=177;SAR=30;SRP=29.8409;SAP=229.693;AB=0.778195;ABP=181.822;RUN=1;RPP=55.8914;RPPR=9.23028;RPL=68.0;RPR=139.0;EPP=30.2953;EPPR=5.99147;DPRA=0.0;ODDS=34.3347;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0966;MQMR=60.0;PAIRED=0.995169;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.443;Dels=0.0;FS=4.942;HaplotypeScore=7.8292;MLEAC=1;MLEAF=0.5;MQ=60.055;MQRankSum=-0.6845;QD=21.79;ReadPosRankSum=0.382;SOR=1.8645;ClippingRankSum=-0.525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:59:36:1344:24:887:-63.6328,0.0,-104.811:23:40:59:35,23:772,0,1298:1:.:1:.:.:.:-0.00135401	0/1:116.4465:205:23:794:183:7022:-575.947,0.0,-15.6364:182:89:205:23,182:7215,0,239:.:1:1:.:.:.:-0.00154183
chr6	135535469	.	G	GA	177.405	REJECT	NS=2;DP=308;DPB=355.688;AC=2;AN=4;AF=0.5;RO=239;AO=31;PRO=32.0;PAO=29.0;QR=8946;QA=1094;PQR=1163.83;PQA=1052.83;SRF=185;SRR=54;SAF=22;SAR=9;SRP=158.929;SAP=14.8483;AB=0.100649;ABP=429.662;RUN=1;RPP=3.64073;RPPR=6.29022;RPL=14.0;RPR=17.0;EPP=11.486;EPPR=10.6513;DPRA=0.0;ODDS=0.729642;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.967742;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:4.87752:76:62:2275:6:218:-1.2184,0.0,-186.388:6:8:71:.:.:1:.:.:.:-0.00135401	0/1:81.7603:232:177:6671:25:876:-23.2731,0.0,-554.631:25:11:221:.:.:1:.:.:.:-0.00154183
chr6	135535469	.	GA	G	177.405	REJECT	NS=2;DP=308;DPB=355.688;AC=2;AN=2;AF=0.0;RO=239;AO=22;PRO=32.0;PAO=29.0;QR=8946;QA=805;PQR=1163.83;PQA=1054.33;SRF=185;SRR=54;SAF=17;SAR=5;SRP=158.929;SAP=17.2236;AB=0.0714286;ABP=494.383;RUN=1;RPP=6.56362;RPPR=6.29022;RPL=8.0;RPR=14.0;EPP=4.58955;EPPR=10.6513;DPRA=0.0;ODDS=0.729642;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:4.87752:76:62:2275:3:102:-1.2184,-11.258,-217.36:3:4:71:.:.:1:.:.:.:-0.00135401	./1:81.7603:232:177:6671:19:703:-23.2731,-8.01138,-570.181:19:9:221:.:.:1:.:.:.:-0.00154183
chr6	135536496	.	T	C	11781.3	REJECT	NS=2;DP=445;DPB=499.0;AC=2;AN=4;AF=0.5;RO=115;AO=384;PRO=0.0;PAO=0.0;QR=4311;QA=14678;PQR=0.0;PQA=0.0;SRF=51;SRR=64;SAF=181;SAR=203;SRP=6.20142;SAP=5.74726;AB=0.769539;ABP=317.9;RUN=1;RPP=5.27225;RPPR=7.25883;RPL=182.0;RPR=202.0;EPP=3.03292;EPPR=4.53977;DPRA=0.0;ODDS=140.563;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997396;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.727;Dels=0.0;FS=1.902;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3975;QD=23.61;ReadPosRankSum=0.4055;SOR=0.639;ClippingRankSum=-0.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:65:2440:42:1570:-112.323,0.0,-190.651:41:39:105:63,41:1402,0,2217:1:.:1:.:.:.:-0.00135401	0/1:129.501:392:50:1871:342:13108:-1072.78,0.0,-62.14:342:87:392:50,342:13459,0,913:.:1:1:.:.:.:-0.00154183
chr6	135536586	.	A	G	11412.5	REJECT	NS=2;DP=427;DPB=486.0;AC=2;AN=4;AF=0.5;RO=111;AO=374;PRO=0.0;PAO=0.0;QR=4209;QA=14257;PQR=0.0;PQA=0.0;SRF=59;SRR=52;SAF=201;SAR=173;SRP=3.96888;SAP=7.56226;AB=0.769547;ABP=309.715;RUN=1;RPP=31.4601;RPPR=21.8102;RPL=222.0;RPR=152.0;EPP=3.38189;EPPR=3.18637;DPRA=0.0;ODDS=201.747;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994652;PAIREDR=0.981982;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0095;Dels=0.0;FS=1.773;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.387;QD=25.72;ReadPosRankSum=-0.1175;SOR=0.789;ClippingRankSum=0.78	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5:115:55:2102:61:2323:-177.631,0.0,-157.751:60:53:115:54,60:2139,0,1958:1:.:1:.:.:.:-0.00135401	0/1:118.5:369:56:2107:313:11934:-973.42,0.0,-89.6076:312:85:368:56,311:12141,0,1270:.:1:1:.:.:.:-0.00154183
chr6	135537890	.	C	G	12114.2	REJECT	NS=2;DP=441;DPB=503.0;AC=2;AN=4;AF=0.5;RO=110;AO=393;PRO=0.0;PAO=0.0;QR=4215;QA=15067;PQR=0.0;PQA=0.0;SRF=50;SRR=60;SAF=215;SAR=178;SRP=4.98437;SAP=10.5745;AB=0.781312;ABP=348.758;RUN=1;RPP=4.60713;RPPR=4.2737;RPL=205.0;RPR=188.0;EPP=4.60713;EPPR=4.2737;DPRA=0.0;ODDS=145.823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994911;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4395;Dels=0.0;FS=6.8875;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.506;QD=26.93;ReadPosRankSum=-0.0375;SOR=0.8925;ClippingRankSum=0.013	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:61:2361:63:2387:-181.209,0.0,-178.89:62:50:123:61,62:2405,0,3719:1:.:1:.:.:.:-0.00135401	0/1:129.501:379:49:1854:330:12680:-1037.78,0.0,-64.1235:330:87:379:49,330:13117,0,938:.:1:1:.:.:.:-0.00154183
chr6	135537897	.	A	G	11688.1	REJECT	NS=2;DP=438;DPB=500.0;AC=2;AN=4;AF=0.5;RO=110;AO=390;PRO=0.0;PAO=0.0;QR=4127;QA=14586;PQR=0.0;PQA=0.0;SRF=53;SRR=57;SAF=218;SAR=172;SRP=3.32615;SAP=14.7919;AB=0.78;ABP=343.497;RUN=1;RPP=4.1016;RPPR=3.08926;RPL=202.0;RPR=188.0;EPP=3.56709;EPPR=4.2737;DPRA=0.0;ODDS=134.333;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994872;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.276;Dels=0.0;FS=6.8925;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1955;QD=26.515;ReadPosRankSum=0.0825;SOR=0.8675;ClippingRankSum=-1.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.131:124:62:2341:62:2299:-173.323,0.0,-177.106:62:50:124:62,62:2505,0,3782:1:.:1:.:.:.:-0.00135401	0/1:119.131:376:48:1786:328:12287:-1003.31,0.0,-58.9282:328:87:376:48,328:12460,0,893:.:1:1:.:.:.:-0.00154183
chr6	135538507	.	C	CA	2357.8900000000003	REJECT	NS=2;DP=125;DPB=195.462;AC=3;AN=4;AF=0.5;RO=13;AO=94;PRO=39.6667;PAO=46.6667;QR=492;QA=3113;PQR=1335.33;PQA=1559.83;SRF=9;SRR=4;SAF=69;SAR=25;SRP=7.18621;SAP=47.7334;AB=0.712121;ABP=54.5992;RUN=1;RPP=26.6655;RPPR=16.5402;RPL=31.0;RPR=63.0;EPP=3.1027;EPPR=16.5402;DPRA=0.0;ODDS=6.59421;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989362;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.126;FS=2.7165;MLEAC=1;MLEAF=0.5;MQ=60.045;MQRankSum=-0.6965;QD=17.47;RPA=10,11;RU=A;ReadPosRankSum=0.927;SOR=1.5675;STR;ClippingRankSum=1.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:26.32145:37:4:151:24:824:-81.2241,0.0,-4.69849:30:83:35:4,36:815,24,0:1:.:1:.:.:.:-0.00135401	0/1:81.624:107:9:341:70:2289:-200.333,0.0,-13.7856:81:85:95:14,92:2063,0,58:.:1:1:.:.:.:-0.00154183
chr6	135538507	.	C	CAA	2690.05	REJECT	NS=2;DP=132;DPB=195.462;AC=2;AN=2;AF=0.0;RO=13;AO=8;PRO=39.6667;PAO=38.6667;QR=492;QA=235;PQR=1335.33;PQA=1286.83;SRF=9;SRR=4;SAF=6;SAR=2;SRP=7.18621;SAP=7.35324;AB=0.0606061;ABP=224.369;RUN=1;RPP=4.09604;RPPR=16.5402;RPL=5.0;RPR=3.0;EPP=12.7819;EPPR=16.5402;DPRA=0.0;ODDS=6.59421;GTI=0;TYPE=ins;CIGAR=1M2I25M;NUMALT=2;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.6429:35:4:151:3:66:-81.2241,-71.0506,-82.2375:3:10:31:.:.:1:.:.:.:-0.00135401	./1:105.248:97:9:341:5:169:-200.333,-187.118,-219.696:5:6:84:.:.:1:.:.:.:-0.00154183
chr6	135538592	.	G	A	12043.0	REJECT	NS=2;DP=331;DPB=384.0;AC=4;AN=4;AF=1.0;RO=0;AO=384;PRO=0.0;PAO=0.0;QR=0;QA=14258;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=290;SAR=94;SRP=0.0;SAP=220.248;AB=0.0;ABP=0.0;RUN=1;RPP=3.10078;RPPR=0.0;RPL=194.0;RPR=190.0;EPP=18.3011;EPPR=0.0;DPRA=0.0;ODDS=69.0972;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.026;MQMR=0.0;PAIRED=0.994792;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8212;MLEAC=2;MLEAF=1.0;MQ=60.02;QD=30.595;SOR=2.216	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:104:3799:-341.913,-28.1335,0.0:102:100:102:0,101:3928,302,0:1:.:1:.:.:.:-0.00135401	1/1:129.501:279:0:0:280:10459:-940.735,-75.7567,0.0:279:100:279:0,279:11572,810,0:.:1:1:.:.:.:-0.00154183
chr6	135538639	.	A	G	12048.8	REJECT	NS=2;DP=325;DPB=373.0;AC=4;AN=4;AF=1.0;RO=0;AO=373;PRO=0.0;PAO=0.0;QR=0;QA=14037;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=142;SRP=0.0;SAP=49.1235;AB=0.0;ABP=0.0;RUN=1;RPP=3.15584;RPPR=0.0;RPL=184.0;RPR=189.0;EPP=23.2754;EPPR=0.0;DPRA=0.0;ODDS=63.5599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994638;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.32;SOR=1.255	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:95:3574:-321.712,-25.7287,0.0:95:100:95:0,95:3846,284,0:1:.:1:.:.:.:-0.00135401	1/1:129.501:277:0:0:278:10463:-941.105,-75.2305,0.0:277:100:277:0,277:11606,810,0:.:1:1:.:.:.:-0.00154183
chr6	136943947	.	GTACTACAGAACAGCTTTTAGTAGCTACAAT	G	.	PASS	AC=2;AN=4;END=136943977;HOMLEN=4;HOMSEQ=TACT;SVLEN=-30;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23,51:51:69:74:.:.:.:1:.:.:-0.00135401	0/1:119,41:41:26:160:.:.:.:1:.:.:-0.00154183
chr6	136977568	.	T	C	1951.28	PASS	SOMATIC;NS=2;DP=280;DPB=280.0;AC=1;AN=3;AF=0.25;RO=199;AO=78;PRO=0.0;PAO=0.0;QR=7598;QA=2957;PQR=0.0;PQA=0.0;SRF=56;SRR=143;SAF=12;SAR=66;SRP=85.6026;SAP=84.19;AB=0.366197;ABP=36.1329;RUN=1;RPP=3.45573;RPPR=17.9487;RPL=41.0;RPR=37.0;EPP=4.79202;EPPR=3.2831;DPRA=3.1791;ODDS=42.8346;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994975;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.087;Dels=0.0;FS=15.235;HaplotypeScore=6.9976;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.351;QD=12.43;ReadPosRankSum=-1.031;SOR=1.7	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:66:67:2585:0:0:0.0,-18.1769,-232.816:0:0:66:66,0:.:0.0:0:.:.:.:0:.:.:0:-0.00135401	0/1:129.501:213:132:5013:78:2957:-209.156,0.0,-394.108:78:37:210:127,77:37.0:0.387:2:2675,0,4946:.:1:1:.:.:1:-0.00154183
chr6	137113137	.	G	A	7985.79	REJECT	NS=2;DP=229;DPB=265.0;AC=4;AN=4;AF=1.0;RO=0;AO=263;PRO=0.0;PAO=0.0;QR=0;QA=9450;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=94;SAR=169;SRP=0.0;SAP=49.4534;AB=0.0;ABP=0.0;RUN=1;RPP=10.9448;RPPR=0.0;RPL=147.0;RPR=116.0;EPP=7.37801;EPPR=0.0;DPRA=0.0;ODDS=48.6104;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8713;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.39;SOR=1.533	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:71:0:0:71:2585:-232.808,-19.2362,0.0:70:100:70:0,70:2799,210,0:1:.:1:.:.:.:-0.00135401	1/1:129.501:193:0:0:192:6865:-617.617,-51.9089,0.0:192:100:192:0,192:7594,548,0:.:1:1:.:.:.:-0.00154183
chr6	138195961	.	TCTC	T	732.317	REJECT	NS=2;DP=210;DPB=211.818;AC=2;AN=4;AF=0.5;RO=165;AO=44;PRO=19.5;PAO=10.5;QR=6240;QA=1592;PQR=674.5;PQA=353.5;SRF=140;SRR=25;SAF=38;SAR=6;SRP=177.057;SAP=53.5464;AB=0.209524;ABP=156.916;RUN=1;RPP=7.94546;RPPR=23.0273;RPL=17.0;RPR=27.0;EPP=3.20771;EPPR=6.81367;DPRA=0.0;ODDS=47.9549;GTI=0;TYPE=del;CIGAR=1M3D7M;NUMALT=1;MEANALT=1.5;LEN=3;MQM=60.6818;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=138195964;HOMLEN=5;HOMSEQ=CTCCT;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=2.312;FS=2.102;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.045;QD=18.65;ReadPosRankSum=0.29;SOR=1.244;ClippingRankSum=1.021	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18,36:22:52:44:129.501:43:20:747:22:811:-61.1466,0.0,-61.974:858,0,982:1:.:1:1:.:.:-0.00135401	0/1:115,47:34:21:164:160.002:168:145:5493:22:781:-23.133,0.0,-469.443:.:.:.:1:1:.:.:-0.00154183
chr6	145522157	.	C	T	1542.49	REJECT	NS=2;DP=173;DPB=228.857;AC=2;AN=2;AF=0.0;RO=30;AO=8;PRO=27.8;PAO=5.15;QR=1076;QA=120;PQR=1003.42;PQA=180.4;SRF=11;SRR=19;SAF=0;SAR=8;SRP=7.64277;SAP=20.3821;AB=0.0462428;ABP=312.401;RUN=1;RPP=7.35324;RPPR=38.0434;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=3.0103;DPRA=0.0;ODDS=6.88813;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:29.9063:36:2:76:1:14:-40.7152,-61.16,-298.819:1:3:34:.:.:1:.:.:.:-0.00135401	./1:160.002:137:28:1000:7:106:-127.872,-197.98,-1052.91:7:6:124:.:.:1:.:.:.:-0.00154183
chr6	145522157	.	C	CT	1542.49	REJECT	NS=2;DP=173;DPB=228.857;AC=2;AN=2;AF=0.0;RO=30;AO=7;PRO=27.8;PAO=22.8;QR=1076;QA=186;PQR=1003.42;PQA=802.417;SRF=11;SRR=19;SAF=3;SAR=4;SRP=7.64277;SAP=3.32051;AB=0.0510949;ABP=242.807;RUN=1;RPP=18.2106;RPPR=38.0434;RPL=7.0;RPR=0.0;EPP=3.32051;EPPR=3.0103;DPRA=0.0;ODDS=6.88813;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=5;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:29.9063:36:2:76:0:0:-40.7152,-41.8007,-54.2316:0:0:34:.:.:1:.:.:.:-0.00135401	./1:160.002:137:28:1000:7:186:-127.872,-120.618,-212.608:7:6:124:.:.:1:.:.:.:-0.00154183
chr6	145522157	.	CT	C	1542.49	REJECT	NS=2;DP=173;DPB=228.857;AC=2;AN=4;AF=0.5;RO=30;AO=81;PRO=27.8;PAO=28.3;QR=1076;QA=2008;PQR=1003.42;PQA=985.25;SRF=11;SRR=19;SAF=20;SAR=61;SRP=7.64277;SAP=48.0751;AB=0.468208;ABP=4.52908;RUN=1;RPP=43.7857;RPPR=38.0434;RPL=60.0;RPR=21.0;EPP=3.25157;EPPR=3.0103;DPRA=0.0;ODDS=6.88813;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.1235;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-2.05;FS=9.513;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.779;QD=12.52;ReadPosRankSum=-0.755;SOR=2.457;ClippingRankSum=-0.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21.45315:37:2:76:23:500:-40.7152,0.0,-6.10854:28:77:36:5,33:609,0,13:1:.:1:.:.:.:-0.00135401	0/1:160.002:137:28:1000:58:1508:-127.872,0.0,-120.948:58:47:124:.:.:.:.:1:.:.:.:-0.00154183
chr6	145522157	.	CTT	C	1542.49	REJECT	NS=2;DP=173;DPB=228.857;AC=2;AN=2;AF=0.0;RO=30;AO=22;PRO=27.8;PAO=17.55;QR=1076;QA=534;PQR=1003.42;PQA=629.083;SRF=11;SRR=19;SAF=1;SAR=21;SRP=7.64277;SAP=42.4916;AB=0.127168;ABP=211.886;RUN=1;RPP=22.3561;RPPR=38.0434;RPL=18.0;RPR=4.0;EPP=17.2236;EPPR=3.0103;DPRA=0.0;ODDS=6.88813;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.168;FS=2.907;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=-0.462;QD=2.92;RPA=15,13;RU=T;ReadPosRankSum=1.483;SOR=1.262;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:29.9063:36:2:76:7:154:-40.7152,-29.6461,-66.7282:7:21:34:.:.:.:.:1:.:.:.:-0.00135401	./1:129.501:172:28:1000:15:380:-127.872,-115.355,-341.295:25:23:112:65,35:683,0,1634:.:1:1:.:.:.:-0.00154183
chr6	145522157	.	CTTT	C	1542.49	REJECT	NS=2;DP=173;DPB=228.857;AC=2;AN=2;AF=0.0;RO=30;AO=10;PRO=27.8;PAO=14.4;QR=1076;QA=309;PQR=1003.42;PQA=517.433;SRF=11;SRR=19;SAF=5;SAR=5;SRP=7.64277;SAP=3.0103;AB=0.0578035;ABP=296.837;RUN=1;RPP=10.8276;RPPR=38.0434;RPL=8.0;RPR=2.0;EPP=6.48466;EPPR=3.0103;DPRA=0.0;ODDS=6.88813;GTI=0;TYPE=del;CIGAR=1M3D17M;NUMALT=5;MEANALT=11.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:29.9063:36:2:76:1:27:-40.7152,-44.7903,-107.063:1:3:34:.:.:1:.:.:.:-0.00135401	./1:160.002:137:28:1000:9:282:-127.872,-129.049,-396.955:9:7:124:.:.:1:.:.:.:-0.00154183
chr6	152129077	.	T	C	11889.6	REJECT	NS=2;DP=433;DPB=497.0;AC=2;AN=4;AF=0.5;RO=112;AO=385;PRO=0.0;PAO=0.0;QR=4186;QA=14831;PQR=0.0;PQA=0.0;SRF=63;SRR=49;SAF=208;SAR=177;SRP=6.81038;SAP=8.43052;AB=0.774648;ABP=328.639;RUN=1;RPP=18.8536;RPPR=3.32051;RPL=166.0;RPR=219.0;EPP=21.3353;EPPR=6.81038;DPRA=0.0;ODDS=129.514;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997403;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.549;Dels=0.0;FS=1.7025;HaplotypeScore=4.9275;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.54;QD=25.745;ReadPosRankSum=-0.102;SOR=0.5445;ClippingRankSum=-0.375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.327:125:65:2441:62:2365:-178.408,0.0,-185.279:61:49:125:63,61:2113,0,2115:1:.:1:.:.:.:-0.00135401	0/1:122.327:370:47:1745:323:12466:-1020.98,0.0,-56.7378:323:87:370:47,323:12860,0,812:.:1:1:.:.:.:-0.00154183
chr6	152201875	.	T	C	8889.720000000001	REJECT	NS=2;DP=363;DPB=413.0;AC=3;AN=4;AF=0.75;RO=107;AO=306;PRO=0.0;PAO=0.0;QR=4181;QA=11876;PQR=0.0;PQA=0.0;SRF=56;SRR=51;SAF=162;SAR=144;SRP=3.51765;SAP=5.30951;AB=0.659236;ABP=72.1655;RUN=1;RPP=4.82696;RPPR=4.00471;RPL=161.0;RPR=145.0;EPP=5.84883;EPPR=3.19295;DPRA=0.0;ODDS=62.7742;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.18;Dels=0.0;FS=0.217;HaplotypeScore=4.9571;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.104;QD=27.195;ReadPosRankSum=0.3;SOR=0.7825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.7385:98:0:0:99:3847:-346.272,-26.8365,0.0:98:100:98:0,98:3955,294,0:1:.:1:.:.:.:-0.00135401	0/1:121.7385:313:107:4181:207:8029:-637.088,0.0,-290.991:207:66:313:106,207:8040,0,3712:.:1:1:.:.:.:-0.00154183
chr6	152265282	.	A	AT	2722.09	REJECT	NS=2;DP=175;DPB=236.0;AC=3;AN=4;AF=0.75;RO=64;AO=126;PRO=19.0;PAO=19.5;QR=2410;QA=4474;PQR=616.333;PQA=633.833;SRF=46;SRR=18;SAF=96;SAR=30;SRP=29.6108;SAP=78.0812;AB=0.546667;ABP=5.84769;RUN=1;RPP=42.7172;RPPR=29.6108;RPL=39.0;RPR=87.0;EPP=3.28604;EPPR=3.0103;DPRA=0.0;ODDS=9.17384;GTI=0;TYPE=ins;CIGAR=1M1I12M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.4762;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.7035;FS=3.117;MLEAC=1;MLEAF=0.75;MQ=60.36;MQRankSum=0.074;QD=19.055;RPA=9,10;RU=T;ReadPosRankSum=-0.944;SOR=2.0695;STR;ClippingRankSum=-0.87	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:67.3854:50:2:78:44:1557:-139.492,-5.93642,0.0:46:93:49:2,48:1279,95,0:1:.:1:.:.:.:-0.00135401	0/1:124.442:150:62:2332:82:2917:-223.464,0.0,-170.879:83:57:147:64,85:2030,0,1474:.:1:1:.:.:.:-0.00154183
chr6	152265282	.	A	ATT	3451.45	REJECT	SOMATIC;NS=2;DP=200;DPB=236.0;AC=1;AN=3;AF=0.0;RO=64;AO=4;PRO=19.0;PAO=19.5;QR=2410;QA=150;PQR=616.333;PQA=633.833;SRF=46;SRR=18;SAF=3;SAR=1;SRP=29.6108;SAP=5.18177;AB=0.00666667;ABP=320.103;RUN=1;RPP=11.6962;RPPR=29.6108;RPL=0.0;RPR=4.0;EPP=5.18177;EPPR=3.0103;DPRA=0.0;ODDS=9.17384;GTI=0;TYPE=ins;CIGAR=1M2I12M;NUMALT=2;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:39.7708:50:2:78:3:112:-139.492,-124.991,-130.117:3:6:49:.:.:.:.:.:.:-0.00135401	./1:149.884:150:62:2332:1:38:-223.464,-237.118,-429.888:1:1:145:.:.:1:.:.:.:-0.00154183
chr6	152265522	.	G	C	7969.6900000000005	REJECT	NS=2;DP=348;DPB=398.0;AC=3;AN=4;AF=0.75;RO=111;AO=285;PRO=0.0;PAO=0.0;QR=4273;QA=10913;PQR=0.0;PQA=0.0;SRF=53;SRR=58;SAF=153;SAR=132;SRP=3.49937;SAP=6.37037;AB=0.622074;ABP=41.7119;RUN=1;RPP=12.3438;RPPR=6.31642;RPL=160.0;RPR=125.0;EPP=3.20078;EPPR=3.18637;DPRA=0.0;ODDS=62.7589;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989474;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.419;Dels=0.0;FS=4.646;HaplotypeScore=4.8657;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.612;QD=27.91;ReadPosRankSum=-2.002;SOR=0.8575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:99:3827:-344.473,-26.8299,0.0:97:100:97:0,96:4027,288,0:1:.:1:.:.:.:-0.00135401	0/1:129.501:299:111:4273:186:7086:-557.327,0.0,-303.923:186:63:297:111,186:7021,0,3901:.:1:1:.:.:.:-0.00154183
chr6	152420095	.	G	A	4046.8100000000004	REJECT	NS=2;DP=272;DPB=311.0;AC=2;AN=4;AF=0.5;RO=159;AO=149;PRO=0.0;PAO=0.0;QR=6098;QA=5715;PQR=0.0;PQA=0.0;SRF=44;SRR=115;SAF=34;SAR=115;SRP=71.8555;SAP=98.628;AB=0.4791;ABP=4.1903;RUN=1;RPP=15.2667;RPPR=9.03306;RPL=89.0;RPR=60.0;EPP=3.72441;EPPR=10.2349;DPRA=0.0;ODDS=244.885;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.8742;PAIRED=0.993289;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.478;Dels=0.0;FS=2.8565;HaplotypeScore=9.7061;MLEAC=1;MLEAF=0.5;MQ=59.965;MQRankSum=-1.1825;QD=17.635;ReadPosRankSum=-0.63;SOR=1.0995;ClippingRankSum=-0.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1565:76:37:1434:40:1518:-115.807,0.0,-108.253:39:52:76:36,39:1399,0,1302:1:.:1:.:.:.:-0.00135401	0/1:119.1565:233:122:4664:109:4197:-314.955,0.0,-356.983:109:47:231:122,109:3986,0,4557:.:1:1:.:.:.:-0.00154183
chr6	152443744	.	G	T	5471.01	REJECT	NS=2;DP=353;DPB=405.0;AC=2;AN=4;AF=0.5;RO=209;AO=196;PRO=0.0;PAO=0.0;QR=7904;QA=7445;PQR=0.0;PQA=0.0;SRF=69;SRR=140;SAF=66;SAR=130;SRP=55.3854;SAP=48.3896;AB=0.483951;ABP=3.91642;RUN=1;RPP=5.84651;RPPR=17.234;RPL=106.0;RPR=90.0;EPP=3.71935;EPPR=3.5194;DPRA=0.0;ODDS=297.41;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.990431;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.2665;Dels=0.0;FS=10.792;HaplotypeScore=6.7816;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.688;QD=16.78;ReadPosRankSum=-0.612;SOR=1.128;ClippingRankSum=-0.09	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:55:2047:47:1763:-131.467,0.0,-156.616:46:46:99:51,46:1565,0,1841:1:.:1:.:.:.:-0.00135401	0/1:129.501:302:154:5857:149:5682:-429.044,0.0,-444.76:149:49:302:153,149:5475,0,5556:.:1:1:.:.:.:-0.00154183
chr6	152453291	.	G	A	1666.79	REJECT	NS=2;DP=394;DPB=444.0;AC=2;AN=4;AF=0.5;RO=357;AO=86;PRO=0.0;PAO=0.0;QR=13551;QA=3252;PQR=0.0;PQA=0.0;SRF=167;SRR=190;SAF=43;SAR=43;SRP=6.22797;SAP=3.0103;AB=0.193694;ABP=364.844;RUN=1;RPP=3.41429;RPPR=10.4614;RPL=41.0;RPR=45.0;EPP=7.95924;EPPR=46.9568;DPRA=0.0;ODDS=74.2674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988796;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.187;Dels=0.0;FS=2.8545;HaplotypeScore=10.6784;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1865;QD=9.425;ReadPosRankSum=1.104;SOR=0.797;ClippingRankSum=0.069	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:49:1868:49:1847:-139.707,0.0,-141.597:49:50:97:48,49:1707,0,1716:1:.:1:.:.:.:-0.00135401	0/1:129.501:345:308:11683:37:1405:-33.0036,0.0,-957.365:37:11:344:307,37:558,0,11908:.:1:1:.:.:.:-0.00154183
chr6	152464839	.	A	G	5825.0650000000005	REJECT	NS=2;DP=369;DPB=418.0;AC=2;AN=4;AF=0.5;RO=213;AO=205;PRO=0.0;PAO=0.0;QR=8074;QA=7877;PQR=0.0;PQA=0.0;SRF=109;SRR=104;SAF=100;SAR=105;SRP=3.26517;SAP=3.27511;AB=0.490431;ABP=3.34277;RUN=1;RPP=7.68161;RPPR=4.73321;RPL=92.0;RPR=113.0;EPP=11.9186;EPPR=5.30411;DPRA=0.0;ODDS=310.787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990244;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.728;Dels=0.0;FS=1.3565;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.24;QD=16.875;ReadPosRankSum=-0.159;SOR=0.8145;ClippingRankSum=-0.411	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:49:1880:47:1806:-136.54,0.0,-143.232:46:49:94:47,46:1511,0,1749:1:.:1:.:.:.:-0.00135401	0/1:129.501:321:164:6194:158:6071:-458.842,0.0,-469.95:157:49:321:164,157:5799,0,5995:.:1:1:.:.:.:-0.00154183
chr6	152489294	.	T	C	13772.75	REJECT	NS=2;DP=368;DPB=420.0;AC=4;AN=4;AF=1.0;RO=0;AO=420;PRO=0.0;PAO=0.0;QR=0;QA=15894;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=202;SAR=218;SRP=0.0;SAP=4.33386;AB=0.0;ABP=0.0;RUN=1;RPP=29.8125;RPPR=0.0;RPL=246.0;RPR=174.0;EPP=32.8732;EPPR=0.0;DPRA=0.0;ODDS=69.152;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9857;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.8564;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.765;SOR=0.7655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.377:103:0:0:104:3909:-351.837,-28.1573,0.0:103:100:103:0,102:4039,306,0:1:.:1:.:.:.:-0.00135401	1/1:124.377:316:0:0:316:11985:-1077.97,-85.544,0.0:316:100:316:0,316:13376,933,0:.:1:1:.:.:.:-0.00154183
chr6	152529260	.	G	A	1965.57	REJECT	NS=2;DP=337;DPB=392.0;AC=2;AN=4;AF=0.5;RO=299;AO=93;PRO=0.0;PAO=0.0;QR=10937;QA=3451;PQR=0.0;PQA=0.0;SRF=119;SRR=180;SAF=41;SAR=52;SRP=30.0339;SAP=5.83555;AB=0.237245;ABP=238.083;RUN=1;RPP=6.95631;RPPR=3.36616;RPL=40.0;RPR=53.0;EPP=20.0318;EPPR=16.4386;DPRA=0.0;ODDS=89.1369;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989247;PAIREDR=0.993311;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.442;Dels=0.0;FS=1.132;HaplotypeScore=12.7202;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6185;QD=10.485;ReadPosRankSum=0.217;SOR=0.5465;ClippingRankSum=0.841	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:48:1674:59:2137:-163.415,0.0,-122.117:58:55:106:47,58:2014,0,1482:1:.:1:.:.:.:-0.00135401	0/1:129.501:284:251:9263:34:1314:-41.0722,0.0,-756.091:33:12:284:250,33:610,0,9404:.:1:1:.:.:.:-0.00154183
chr6	152540278	.	A	C	13595.9	REJECT	NS=2;DP=362;DPB=407.0;AC=4;AN=4;AF=1.0;RO=1;AO=406;PRO=0.0;PAO=0.0;QR=36;QA=15519;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=196;SAR=210;SRP=5.18177;SAP=4.0586;AB=0.0;ABP=0.0;RUN=1;RPP=5.14968;RPPR=5.18177;RPL=213.0;RPR=193.0;EPP=24.9176;EPPR=5.18177;DPRA=0.0;ODDS=59.8722;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995074;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.273;Dels=0.0;FS=1.5395;HaplotypeScore=11.6473;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.415;QD=27.53;ReadPosRankSum=0.694;SOR=0.6125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.2595:88:0:0:89:3427:-308.521,-24.1271,0.0:88:100:88:0,88:3604,264,0:1:.:1:.:.:.:-0.00135401	1/1:124.2595:317:1:36:317:12092:-1084.3,-82.8224,0.0:316:100:317:1,316:13350,886,0:.:1:1:.:.:.:-0.00154183
chr6	152542548	.	A	G	7620.73	REJECT	NS=2;DP=289;DPB=332.0;AC=2;AN=4;AF=0.5;RO=74;AO=257;PRO=0.0;PAO=0.0;QR=2850;QA=9699;PQR=0.0;PQA=0.0;SRF=54;SRR=20;SAF=168;SAR=89;SRP=36.9322;SAP=55.7424;AB=0.774096;ABP=219.66;RUN=1;RPP=82.5098;RPPR=4.06669;RPL=80.0;RPR=177.0;EPP=14.5774;EPPR=12.5178;DPRA=0.0;ODDS=56.9279;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992218;PAIREDR=0.986486;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0005;Dels=0.0;FS=3.026;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.441;QD=24.3;ReadPosRankSum=0.499;SOR=0.3925;ClippingRankSum=-0.408	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:47:1806:37:1416:-104.714,0.0,-139.825:37:44:83:46,37:1245,0,1702:1:.:1:.:.:.:-0.00135401	0/1:129.501:246:27:1044:220:8283:-678.182,0.0,-27.0876:219:89:246:27,219:8378,0,462:.:1:1:.:.:.:-0.00154183
chr6	152555112	.	C	T	1773.69	REJECT	NS=2;DP=322;DPB=375.0;AC=2;AN=4;AF=0.5;RO=287;AO=86;PRO=0.0;PAO=0.0;QR=10907;QA=3328;PQR=0.0;PQA=0.0;SRF=90;SRR=197;SAF=28;SAR=58;SRP=89.6346;SAP=25.735;AB=0.229333;ABP=241.635;RUN=1;RPP=25.735;RPPR=74.1998;RPL=58.0;RPR=28.0;EPP=3.1113;EPPR=3.01787;DPRA=0.0;ODDS=127.436;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996516;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6145;Dels=0.0;FS=1.16;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3205;QD=9.485;ReadPosRankSum=0.0675;SOR=0.6695;ClippingRankSum=0.512	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:56:2113:49:1883:-141.051,0.0,-161.726:48:46:104:56,48:1692,0,1968:1:.:1:.:.:.:-0.00135401	0/1:129.501:269:231:8794:37:1445:-57.4065,0.0,-718.434:37:14:268:231,37:827,0,9021:.:1:1:.:.:.:-0.00154183
chr6	152558111	.	T	TA	541.507	REJECT	NS=2;DP=160;DPB=176.417;AC=2;AN=4;AF=0.5;RO=124;AO=33;PRO=14.5;PAO=11.5;QR=4646;QA=1227;PQR=503.0;PQA=351.0;SRF=9;SRR=115;SAF=1;SAR=32;SRP=199.774;SAP=66.2462;AB=0.20625;ABP=122.93;RUN=1;RPP=17.8158;RPPR=104.159;RPL=24.0;RPR=9.0;EPP=22.0271;EPPR=70.3259;DPRA=0.0;ODDS=3.17695;GTI=1;TYPE=ins;CIGAR=1M1I11M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991935;technology.ILLUMINA=1.0;BaseQRankSum=-1.102;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=-0.871;QD=13.22;ReadPosRankSum=0.256;SOR=1.127;ClippingRankSum=-0.974	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.29:40:16:608:22:815:-64.8663,0.0,-47.0666:23:59:40:17,25:632,0,393:1:.:1:.:.:.:-0.00135401	0/1:0.17748:121:108:4038:11:412:-3.74265,0.0,-342.973:11:9:119:.:.:.:.:1:.:.:.:-0.00154183
chr6	152570415	.	G	A	8126.665	REJECT	NS=2;DP=217;DPB=247.0;AC=4;AN=4;AF=1.0;RO=0;AO=247;PRO=0.0;PAO=0.0;QR=0;QA=9458;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=51;SAR=196;SRP=0.0;SAP=187.849;AB=0.0;ABP=0.0;RUN=1;RPP=60.6906;RPPR=0.0;RPL=164.0;RPR=83.0;EPP=3.08942;EPPR=0.0;DPRA=0.0;ODDS=41.127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991903;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8895;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.36;SOR=2.3795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.918:58:0:0:59:2205:-198.619,-15.9862,0.0:58:100:58:0,58:2405,174,0:1:.:1:.:.:.:-0.00135401	1/1:125.918:187:0:0:188:7253:-652.516,-50.9327,0.0:187:100:187:0,187:8064,557,0:.:1:1:.:.:.:-0.00154183
chr6	152615200	.	G	A	2935.9	PASS	SOMATIC;NS=2;DP=389;DPB=389.0;AC=1;AN=3;AF=0.25;RO=277;AO=111;PRO=0.0;PAO=0.0;QR=10577;QA=4267;PQR=0.0;PQA=0.0;SRF=105;SRR=172;SAF=32;SAR=79;SRP=38.2007;SAP=46.2246;AB=0.372483;ABP=45.099;RUN=1;RPP=3.96888;RPPR=14.9338;RPL=59.0;RPR=52.0;EPP=4.59489;EPPR=12.6134;DPRA=3.27473;ODDS=57.1099;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99639;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.23;Dels=0.0;FS=8.819;HaplotypeScore=2.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.286;QD=12.99;ReadPosRankSum=-0.679;SOR=1.152	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.806:88:90:3452:0:0:0.0,-24.3766,-310.733:0:0:87:84,0:.:0.0:0:.:.:.:0:.:.:0:-0.00135401	0/1:121.403:298:187:7125:111:4267:-303.501,0.0,-560.146:111:37:298:179,107:38.0:0.376:2:3898,0,7050:.:1:1:.:.:1:-0.00154183
chr6	152629617	.	C	T	2015.47	PASS	SOMATIC;NS=2;DP=338;DPB=338.0;AC=1;AN=3;AF=0.25;RO=256;AO=82;PRO=0.0;PAO=0.0;QR=9303;QA=3126;PQR=0.0;PQA=0.0;SRF=179;SRR=77;SAF=58;SAR=24;SRP=91.2603;SAP=33.6228;AB=0.327935;ABP=66.5281;RUN=1;RPP=9.78953;RPPR=35.6163;RPL=33.0;RPR=49.0;EPP=9.78953;EPPR=3.55317;DPRA=0.0;ODDS=50.015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996094;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.478;Dels=0.0;FS=0.542;HaplotypeScore=2.932;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.995;QD=10.97;ReadPosRankSum=-0.05;SOR=0.735	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:89:90:3246:1:36:0.0,-21.373,-288.954:1:1:89:87,1:.:0.011:0:.:.:.:0:.:.:0:-0.00135401	0/1:129.501:247:166:6057:81:3090:-211.132,0.0,-478.016:81:33:247:160,79:38.0:0.332:2:2739,0,5966:.:1:1:.:.:1:-0.00154183
chr6	152629772	.	G	A	560.371	REJECT	NS=2;DP=134;DPB=176.0;AC=2;AN=2;AF=0.0;RO=56;AO=7;PRO=40.6667;PAO=1.0;QR=2028;QA=98;PQR=1420.83;PQA=14.0;SRF=7;SRR=49;SAF=0;SAR=7;SRP=71.4117;SAP=18.2106;AB=0.0522388;ABP=236.363;RUN=1;RPP=3.32051;RPPR=12.937;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=3.16541;DPRA=0.0;ODDS=4.49007;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.5122:40:20:706:2:28:-6.16425,-26.2815,-264.611:2:6:34:.:.:1:.:.:.:-0.00135401	./1:160.002:94:36:1322:5:70:-60.2162,-112.127,-714.927:5:6:84:.:.:1:.:.:.:-0.00154183
chr6	152629772	.	G	GA	560.371	REJECT	NS=2;DP=134;DPB=176.0;AC=2;AN=3;AF=0.25;RO=56;AO=13;PRO=40.6667;PAO=21.6667;QR=2028;QA=336;PQR=1420.83;PQA=700.833;SRF=7;SRR=49;SAF=1;SAR=12;SRP=71.4117;SAP=23.2217;AB=0.0970149;ABP=192.026;RUN=1;RPP=3.17734;RPPR=12.937;RPL=7.0;RPR=6.0;EPP=3.17734;EPPR=3.16541;DPRA=0.0;ODDS=4.49007;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:19.5122:40:20:706:5:123:-6.16425,0.0,-68.1187:5:15:34:.:.:1:.:.:.:-0.00135401	./1:160.002:94:36:1322:8:213:-60.2162,-52.8055,-215.343:8:10:84:.:.:1:.:.:.:-0.00154183
chr6	152629772	.	GA	G	560.371	REJECT	NS=2;DP=134;DPB=176.0;AC=2;AN=3;AF=0.375;RO=56;AO=36;PRO=40.6667;PAO=21.1667;QR=2028;QA=935;PQR=1420.83;PQA=654.833;SRF=7;SRR=49;SAF=4;SAR=32;SRP=71.4117;SAP=50.3001;AB=0.268657;ABP=65.3024;RUN=1;RPP=3.0103;RPPR=12.937;RPL=18.0;RPR=18.0;EPP=3.9754;EPPR=3.16541;DPRA=0.0;ODDS=4.49007;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.1765;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.78;QD=2.595;RPA=14,13;RU=A;ReadPosRankSum=-0.2105;SOR=0.6575;STR;ClippingRankSum=0.246	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.2561:40:20:706:6:133:-6.16425,-2.07775,-80.9482:8:23:37:29,11:120,0,557:1:.:1:.:.:.:-0.00135401	0/1:129.501:133:36:1322:30:802:-60.2162,0.0,-191.93:38:35:108:86,47:671,0,1430:.:1:1:.:.:.:-0.00154183
chr6	152629772	.	GAA	G	560.371	REJECT	NS=2;DP=134;DPB=176.0;AC=2;AN=2;AF=0.0;RO=56;AO=6;PRO=40.6667;PAO=13.5;QR=2028;QA=131;PQR=1420.83;PQA=465.5;SRF=7;SRR=49;SAF=0;SAR=6;SRP=71.4117;SAP=16.0391;AB=0.0447761;ABP=244.206;RUN=1;RPP=3.0103;RPPR=12.937;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=3.16541;DPRA=0.0;ODDS=4.49007;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=4;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.5122:40:20:706:1:36:-6.16425,-12.2663,-110.283:1:3:34:.:.:1:.:.:.:-0.00135401	./1:160.002:94:36:1322:5:95:-60.2162,-67.9529,-296.78:5:6:84:.:.:1:.:.:.:-0.00154183
chr6	152647681	.	A	T	4959.610000000001	REJECT	NS=2;DP=325;DPB=375.0;AC=2;AN=4;AF=0.5;RO=193;AO=181;PRO=0.0;PAO=0.0;QR=7364;QA=6848;PQR=0.0;PQA=0.0;SRF=92;SRR=101;SAF=76;SAR=105;SRP=3.92164;SAP=13.0998;AB=0.482667;ABP=3.98891;RUN=1;RPP=4.46195;RPPR=3.11156;RPL=96.0;RPR=85.0;EPP=5.03781;EPPR=3.92164;DPRA=0.0;ODDS=303.634;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994475;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.563;Dels=0.0;FS=3.2595;HaplotypeScore=7.7963;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5145;QD=16.195;ReadPosRankSum=0.745;SOR=0.8745;ClippingRankSum=0.495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:53:2022:47:1766:-131.866,0.0,-154.923:46:47:99:52,46:1490,0,1865:1:.:1:.:.:.:-0.00471738	0/1:129.501:275:140:5342:134:5082:-382.917,0.0,-406.333:134:49:274:140,134:4873,0,5159:.:1:1:.:.:.:-0.00439239
chr6	152652034	.	A	T	6351.135	REJECT	NS=2;DP=361;DPB=423.0;AC=2;AN=4;AF=0.5;RO=198;AO=225;PRO=0.0;PAO=0.0;QR=7507;QA=8735;PQR=0.0;PQA=0.0;SRF=80;SRR=118;SAF=111;SAR=114;SRP=18.8467;SAP=3.09716;AB=0.531915;ABP=6.75262;RUN=1;RPP=7.26639;RPPR=3.18577;RPL=102.0;RPR=123.0;EPP=3.4832;EPPR=11.6085;DPRA=0.0;ODDS=375.924;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995556;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.354;Dels=0.0;FS=6.2015;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7695;QD=19.55;ReadPosRankSum=-0.0615;SOR=0.3845;ClippingRankSum=1.233	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:58:2200:64:2487:-190.766,0.0,-164.926:64:52:121:57,64:2316,0,1925:1:.:1:.:.:.:-0.00471738	0/1:129.501:300:140:5307:161:6248:-480.49,0.0,-395.809:160:53:300:140,160:6084,0,4984:.:1:1:.:.:.:-0.00439239
chr6	152653037	.	T	C	2976.6099999999997	REJECT	NS=2;DP=200;DPB=227.0;AC=2;AN=4;AF=0.5;RO=118;AO=109;PRO=0.0;PAO=0.0;QR=4488;QA=4180;PQR=0.0;PQA=0.0;SRF=28;SRR=90;SAF=30;SAR=79;SRP=73.7488;SAP=50.8425;AB=0.480176;ABP=3.78514;RUN=1;RPP=47.0175;RPPR=11.917;RPL=78.0;RPR=31.0;EPP=3.98647;EPPR=4.85053;DPRA=0.0;ODDS=150.407;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.925;Dels=0.0;FS=2.025;HaplotypeScore=5.8956;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2965;QD=18.27;ReadPosRankSum=0.1845;SOR=0.595;ClippingRankSum=0.481	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:49:24:904:28:1049:-80.4165,0.0,-67.3673:27:54:49:21,26:966,0,735:1:.:1:.:.:.:-0.00471738	0/1:129.501:174:94:3584:81:3131:-234.294,0.0,-275.047:81:46:174:93,81:2986,0,3416:.:1:1:.:.:.:-0.00439239
chr6	152658142	.	T	C	4502.33	REJECT	NS=2;DP=278;DPB=321.0;AC=2;AN=4;AF=0.5;RO=155;AO=166;PRO=0.0;PAO=0.0;QR=5996;QA=6346;PQR=0.0;PQA=0.0;SRF=45;SRR=110;SAF=56;SAR=110;SRP=62.2004;SAP=41.155;AB=0.517134;ABP=3.82883;RUN=1;RPP=18.1321;RPPR=7.05905;RPL=100.0;RPR=66.0;EPP=9.34158;EPPR=3.36054;DPRA=0.0;ODDS=244.626;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5395;Dels=0.0;FS=2.0765;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7995;QD=18.63;ReadPosRankSum=0.5145;SOR=0.492;ClippingRankSum=-0.409	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.47:84:38:1458:48:1854:-143.603,0.0,-107.942:47:56:84:36,47:1608,0,1199:1:.:1:.:.:.:-0.00471738	0/1:120.47:235:117:4538:118:4492:-340.42,0.0,-344.565:118:50:235:117,118:4312,0,4395:.:1:1:.:.:.:-0.00439239
chr6	152665261	.	C	A	14630.55	REJECT	NS=2;DP=393;DPB=449.0;AC=4;AN=4;AF=1.0;RO=0;AO=449;PRO=0.0;PAO=0.0;QR=0;QA=16939;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=256;SAR=193;SRP=0.0;SAP=22.2053;AB=0.0;ABP=0.0;RUN=1;RPP=3.40204;RPPR=0.0;RPL=229.0;RPR=220.0;EPP=15.5894;EPPR=0.0;DPRA=0.0;ODDS=73.5902;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997773;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.63;SOR=1.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.4825:111:0:0:111:4225:-380.289,-30.0848,0.0:111:100:111:0,111:4507,333,0:1:.:1:.:.:.:-0.00471738	1/1:123.4825:337:0:0:338:12714:-1143.54,-91.4765,0.0:337:100:337:0,337:14126,987,0:.:1:1:.:.:.:-0.00439239
chr6	152671475	.	A	C	10377.5	REJECT	NS=2;DP=276;DPB=318.0;AC=4;AN=4;AF=1.0;RO=0;AO=317;PRO=0.0;PAO=0.0;QR=0;QA=12077;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=112;SAR=205;SRP=0.0;SAP=62.2566;AB=0.0;ABP=0.0;RUN=1;RPP=18.1421;RPPR=0.0;RPL=182.0;RPR=135.0;EPP=14.5253;EPPR=0.0;DPRA=0.0;ODDS=56.0487;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996845;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.745;SOR=1.2855	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:83:3110:-279.979,-22.4666,0.0:81:100:81:0,79:3145,236,0:1:.:1:.:.:.:-0.00471738	1/1:129.501:234:0:0:234:8967:-806.645,-63.3844,0.0:234:100:234:0,234:10044,698,0:.:1:1:.:.:.:-0.00439239
chr6	152671919	.	G	GA	4652.485	REJECT	NS=2;DP=204;DPB=247.533;AC=4;AN=4;AF=1.0;RO=5;AO=178;PRO=20.0;PAO=23.5;QR=184;QA=6152;PQR=732.0;PQA=819.5;SRF=3;SRR=2;SAF=24;SAR=154;SRP=3.44459;SAP=209.178;AB=0.0;ABP=0.0;RUN=1;RPP=69.8136;RPPR=13.8677;RPL=126.0;RPR=52.0;EPP=13.9897;EPPR=3.44459;DPRA=0.0;ODDS=13.6494;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=59.9494;MQMR=60.0;PAIRED=0.994382;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.357;FS=7.3885;MLEAC=2;MLEAF=1.0;MQ=60.115;MQRankSum=-0.2235;QD=20.505;RPA=9,10;RU=A;ReadPosRankSum=-0.473;SOR=3.411;STR;ClippingRankSum=-0.026	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:78.5059:52:2:67:44:1512:-134.013,-4.04707,0.0:47:92:51:2,50:1300,98,0:1:.:1:.:.:.:-0.00471738	1/1:115.0375:178:3:117:134:4640:-416.157,-24.7498,0.0:144:93:153:4,154:4160,347,0:.:1:1:.:.:.:-0.00439239
chr6	152671919	.	G	GAA	5182.24	REJECT	NS=2;DP=206;DPB=247.533;AC=0;AN=4;AF=0.0;RO=5;AO=16;PRO=20.0;PAO=18.5;QR=184;QA=468;PQR=732.0;PQA=679.5;SRF=3;SRR=2;SAF=1;SAR=15;SRP=3.44459;SAP=29.6108;AB=0.0;ABP=0.0;RUN=1;RPP=3.55317;RPPR=13.8677;RPL=7.0;RPR=9.0;EPP=3.0103;EPPR=3.44459;DPRA=0.0;ODDS=13.6494;GTI=0;TYPE=ins;CIGAR=1M2I14M;NUMALT=2;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:59.0118:53:2:67:4:117:-134.013,-118.879,-125.644:4:8:50:.:.:.:.:.:.:-0.00471738	0/0:131.075:153:3:117:12:351:-416.157,-388.898,-398.449:12:8:149:.:.:.:.:.:.:-0.00439239
chr6	152673147	.	G	A	7600.950000000001	REJECT	NS=2;DP=205;DPB=233.0;AC=4;AN=4;AF=1.0;RO=0;AO=233;PRO=0.0;PAO=0.0;QR=0;QA=8824;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=151;SAR=82;SRP=0.0;SAP=47.381;AB=0.0;ABP=0.0;RUN=1;RPP=67.2132;RPPR=0.0;RPL=75.0;RPR=158.0;EPP=14.4268;EPPR=0.0;DPRA=0.0;ODDS=38.0419;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995708;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.945;SOR=1.3755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.5175:54:0:0:54:2061:-185.691,-14.6463,0.0:54:100:54:0,54:2310,162,0:1:.:1:.:.:.:-0.00471738	1/1:122.278:178:0:0:179:6763:-608.429,-48.4513,0.0:178:100:178:0,178:7449,518,0:.:1:1:.:.:.:-0.00439239
chr6	152673519	.	A	C	6863.445	REJECT	NS=2;DP=204;DPB=235.0;AC=4;AN=4;AF=1.0;RO=1;AO=231;PRO=0.0;PAO=0.0;QR=16;QA=8379;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=48;SAR=183;SRP=5.18177;SAP=174.331;AB=0.0;ABP=0.0;RUN=1;RPP=252.767;RPPR=5.18177;RPL=197.0;RPR=34.0;EPP=74.1613;EPPR=5.18177;DPRA=0.0;ODDS=41.1025;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9913;MQMR=70.0;PAIRED=0.995671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.562;Dels=0.01;FS=0.0;HaplotypeScore=20.4057;MLEAC=2;MLEAF=1.0;MQ=60.08;MQRankSum=-1.732;QD=28.885;ReadPosRankSum=0.085;SOR=2.0955;ClippingRankSum=-0.142	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:61:1:16:60:2203:-196.992,-15.0724,0.0:60:98:61:1,60:2331,173,0:1:.:1:.:.:.:-0.00471738	1/1:129.501:173:0:0:171:6176:-555.575,-46.1837,0.0:171:100:171:0,171:6788,482,0:.:1:1:.:.:.:-0.00439239
chr6	152675854	.	A	G	15495.7	REJECT	NS=2;DP=418;DPB=475.0;AC=4;AN=4;AF=1.0;RO=0;AO=474;PRO=0.0;PAO=0.0;QR=0;QA=17824;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=249;SRP=0.0;SAP=5.64905;AB=0.0;ABP=0.0;RUN=1;RPP=3.02862;RPPR=0.0;RPL=236.0;RPR=238.0;EPP=3.30349;EPPR=0.0;DPRA=0.0;ODDS=74.7436;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991561;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8771;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.445;SOR=0.8255	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.6915:112:0:0:113:4266:-383.916,-30.5857,0.0:112:100:112:0,111:4426,333,0:1:.:1:.:.:.:-0.00471738	1/1:125.6915:361:0:0:361:13558:-1219.34,-97.6444,0.0:360:100:360:0,360:15033,1050,0:.:1:1:.:.:.:-0.00439239
chr6	152683413	.	G	T	14552.2	REJECT	NS=2;DP=396;DPB=450.0;AC=4;AN=4;AF=1.0;RO=0;AO=450;PRO=0.0;PAO=0.0;QR=0;QA=16757;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=214;SAR=236;SRP=0.0;SAP=5.34584;AB=0.0;ABP=0.0;RUN=1;RPP=3.31913;RPPR=0.0;RPL=221.0;RPR=229.0;EPP=9.26414;EPPR=0.0;DPRA=0.0;ODDS=70.4014;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995556;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8659;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.305;SOR=0.8845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:106:3958:-356.241,-28.6999,0.0:104:100:104:0,103:4329,310,0:1:.:1:.:.:.:-0.00471738	1/1:129.501:343:0:0:344:12799:-1151.08,-93.0129,0.0:343:100:343:0,343:14111,984,0:.:1:1:.:.:.:-0.00439239
chr6	152694184	.	T	C	11662.75	REJECT	NS=2;DP=310;DPB=356.0;AC=4;AN=4;AF=1.0;RO=0;AO=356;PRO=0.0;PAO=0.0;QR=0;QA=13549;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=125;SRP=0.0;SAP=71.5459;AB=0.0;ABP=0.0;RUN=1;RPP=23.5295;RPPR=0.0;RPL=149.0;RPR=207.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=61.0938;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988764;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.975;SOR=1.355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.254:90:0:0:91:3450:-310.576,-24.6576,0.0:90:100:90:0,90:3678,270,0:1:.:1:.:.:.:-0.00471738	1/1:126.254:265:0:0:265:10099:-908.413,-71.7554,0.0:265:100:265:0,265:11295,786,0:.:1:1:.:.:.:-0.00439239
chr6	152712440	.	G	T	3395.26	PASS	SOMATIC;NS=2;DP=476;DPB=476.0;AC=1;AN=3;AF=0.25;RO=347;AO=129;PRO=0.0;PAO=0.0;QR=13352;QA=4917;PQR=0.0;PQA=0.0;SRF=200;SRR=147;SAF=66;SAR=63;SRP=20.5886;SAP=3.1618;AB=0.359331;ABP=64.7128;RUN=1;RPP=3.02713;RPPR=5.26938;RPL=64.0;RPR=65.0;EPP=4.37378;EPPR=3.16675;DPRA=3.06838;ODDS=74.0176;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992248;PAIREDR=0.997118;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.625;Dels=0.0;FS=4.955;HaplotypeScore=8.7786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.643;QD=12.11;ReadPosRankSum=1.374;SOR=0.492	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:113:117:4508:0:0:0.0,-31.7195,-405.729:0:0:113:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00471738	0/1:129.501:357:230:8844:129:4917:-345.016,0.0,-698.228:128:36:357:218,122:38.0:0.36:2:4350,0,8805:.:1:1:.:.:1:-0.00439239
chr6	152765726	.	G	GA	94.1347	REJECT	NS=2;DP=184;DPB=205.824;AC=2;AN=2;AF=0.0;RO=138;AO=16;PRO=24.1667;PAO=12.1667;QR=5115;QA=511;PQR=862.667;PQA=421.667;SRF=11;SRR=127;SAF=1;SAR=15;SRP=214.745;SAP=29.6108;AB=0.0882353;ABP=203.297;RUN=1;RPP=3.55317;RPPR=48.8945;RPL=7.0;RPR=9.0;EPP=5.18177;EPPR=23.4033;DPRA=0.0;ODDS=6.10582;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=58.75;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992754;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.4008:48:38:1390:4:119:0.0,-0.941022,-117.965:4:9:45:.:.:1:.:.:.:-0.00471738	./1:94.1339:136:100:3725:12:392:-16.3371,-14.3889,-352.582:12:9:128:.:.:1:.:.:.:-0.00439239
chr6	152765726	.	GA	G	94.1347	REJECT	NS=2;DP=184;DPB=205.824;AC=2;AN=3;AF=0.25;RO=138;AO=19;PRO=24.1667;PAO=11.6667;QR=5115;QA=681;PQR=862.667;PQA=403.667;SRF=11;SRR=127;SAF=4;SAR=15;SRP=214.745;SAP=16.8392;AB=0.117647;ABP=175.706;RUN=1;RPP=22.325;RPPR=48.8945;RPL=16.0;RPR=3.0;EPP=5.8675;EPPR=23.4033;DPRA=0.0;ODDS=6.10582;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992754;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.4008:48:38:1390:3:111:0.0,-1.39362,-118.679:3:7:45:.:.:1:.:.:.:-0.00471738	0/1:94.1339:136:100:3725:16:570:-16.3371,0.0,-343.032:16:13:128:.:.:1:.:.:.:-0.00439239
chr6	152772264	.	A	G	2032.025	REJECT	NS=2;DP=376;DPB=430.0;AC=2;AN=4;AF=0.5;RO=331;AO=99;PRO=0.0;PAO=0.0;QR=12742;QA=3705;PQR=0.0;PQA=0.0;SRF=146;SRR=185;SAF=42;SAR=57;SRP=12.9886;SAP=7.94546;AB=0.230233;ABP=274.818;RUN=1;RPP=16.7191;RPPR=17.5021;RPL=62.0;RPR=37.0;EPP=3.20771;EPPR=8.52755;DPRA=0.0;ODDS=115.16;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.990937;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.31;Dels=0.0;FS=2.7905;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.235;QD=10.55;ReadPosRankSum=0.238;SOR=0.727;ClippingRankSum=0.055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:46:1764:59:2156:-165.599,0.0,-130.376:59:56:105:46,59:1998,0,1628:1:.:1:.:.:.:-0.00471738	0/1:129.501:323:285:10978:40:1549:-51.3019,0.0,-899.365:40:12:323:282,40:783,0,11172:.:1:1:.:.:.:-0.00439239
chr6	152777819	.	G	A	1734.4650000000001	REJECT	NS=2;DP=342;DPB=391.0;AC=2;AN=4;AF=0.5;RO=300;AO=91;PRO=0.0;PAO=0.0;QR=11475;QA=3389;PQR=0.0;PQA=0.0;SRF=163;SRR=137;SAF=50;SAR=41;SRP=7.90335;SAP=4.94315;AB=0.232737;ABP=245.599;RUN=1;RPP=5.89764;RPPR=54.0833;RPL=40.0;RPR=51.0;EPP=8.37933;EPPR=42.6469;DPRA=0.0;ODDS=153.861;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.627;Dels=0.0;FS=3.9345;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5855;QD=9.645;ReadPosRankSum=0.3715;SOR=0.6405;ClippingRankSum=0.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.514:96:49:1859:48:1748:-131.07,0.0,-141.08:47:49:96:48,47:1572,0,1649:1:.:1:.:.:.:-0.00471738	0/1:119.514:294:251:9616:43:1641:-67.9945,0.0,-785.298:43:15:294:251,43:973,0,9857:.:1:1:.:.:.:-0.00439239
chr6	152784621	.	T	C	1563.12	REJECT	NS=2;DP=302;DPB=350.0;AC=2;AN=4;AF=0.5;RO=270;AO=80;PRO=0.0;PAO=0.0;QR=10252;QA=2951;PQR=0.0;PQA=0.0;SRF=80;SRR=190;SAF=23;SAR=57;SRP=100.324;SAP=34.3881;AB=0.228571;ABP=226.982;RUN=1;RPP=18.6449;RPPR=28.2315;RPL=52.0;RPR=28.0;EPP=3.11887;EPPR=3.52502;DPRA=0.0;ODDS=77.5156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9875;PAIREDR=0.992593;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.465;Dels=0.0;FS=0.904;HaplotypeScore=4.9974;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.57;QD=9.26;ReadPosRankSum=0.0245;SOR=0.854;ClippingRankSum=0.074	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:47:1718:47:1766:-133.509,0.0,-129.216:46:50:93:46,46:1549,0,1568:1:.:1:.:.:.:-0.00471738	0/1:129.501:255:223:8534:33:1185:-37.2678,0.0,-698.345:33:13:255:221,33:534,0,8702:.:1:1:.:.:.:-0.00439239
chr6	152793412	.	C	A	5015.46	REJECT	NS=2;DP=227;DPB=266.0;AC=3;AN=4;AF=0.75;RO=77;AO=189;PRO=0.0;PAO=0.0;QR=2883;QA=7285;PQR=0.0;PQA=0.0;SRF=57;SRR=20;SAF=154;SAR=35;SRP=41.6174;SAP=165.71;AB=0.590426;ABP=16.3625;RUN=1;RPP=30.596;RPPR=20.6359;RPL=70.0;RPR=119.0;EPP=3.02179;EPPR=3.26411;DPRA=0.0;ODDS=49.6754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0529;MQMR=60.0;PAIRED=0.994709;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.766;Dels=0.0;FS=4.286;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.75;MQ=60.03;MQRankSum=-0.458;QD=30.285;ReadPosRankSum=0.728;SOR=1.9955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.979:78:0:0:78:2988:-269.054,-21.1478,0.0:78:100:78:0,78:3161,234,0:1:.:1:.:.:.:-0.00471738	0/1:118.979:188:77:2883:111:4297:-335.678,0.0,-208.436:111:59:188:77,111:4270,0,2631:.:1:1:.:.:.:-0.00439239
chr6	152809527	.	A	T	1297.435	REJECT	NS=2;DP=298;DPB=337.0;AC=2;AN=4;AF=0.5;RO=267;AO=70;PRO=0.0;PAO=0.0;QR=10188;QA=2722;PQR=0.0;PQA=0.0;SRF=169;SRR=98;SAF=42;SAR=28;SRP=44.008;SAP=9.09042;AB=0.207715;ABP=253.078;RUN=1;RPP=38.8706;RPPR=46.3503;RPL=18.0;RPR=52.0;EPP=4.12706;EPPR=10.826;DPRA=0.0;ODDS=111.971;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.03;Dels=0.0;FS=2.4935;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.865;QD=9.34;ReadPosRankSum=0.0745;SOR=0.4335;ClippingRankSum=-0.315	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:40:1528:35:1351:-101.318,0.0,-117.253:34:47:74:39,34:1184,0,1363:1:.:1:.:.:.:-0.00471738	0/1:129.501:260:227:8660:35:1371:-52.3572,0.0,-708.024:35:13:260:224,35:767,0,8777:.:1:1:.:.:.:-0.00439239
chr6	153344531	.	T	A	10683.5	REJECT	NS=2;DP=393;DPB=450.0;AC=2;AN=4;AF=0.5;RO=103;AO=347;PRO=0.0;PAO=0.0;QR=4023;QA=13367;PQR=0.0;PQA=0.0;SRF=52;SRR=51;SAF=149;SAR=198;SRP=3.03138;SAP=18.0354;AB=0.771111;ABP=290.301;RUN=1;RPP=11.5773;RPPR=4.04333;RPL=192.0;RPR=155.0;EPP=36.3584;EPPR=20.7405;DPRA=0.0;ODDS=163.102;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997118;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.029;Dels=0.0;FS=8.9715;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.134;QD=25.515;ReadPosRankSum=0.6725;SOR=0.772;ClippingRankSum=-0.294	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:57:2225:57:2202:-167.275,0.0,-169.342:56:50:113:56,56:1907,0,1925:1:.:1:.:.:.:-0.00471738	0/1:129.501:336:46:1798:290:11165:-913.194,0.0,-70.7313:290:86:336:46,290:11541,0,1012:.:1:1:.:.:.:-0.00439239
chr6	157099165	.	GTCC	G	66.73	PASS	DP=63;AC=1;AN=4;AF=0.5;BaseQRankSum=-1.362;FS=9.37;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.702;QD=1.06;ReadPosRankSum=-0.072;SOR=0.061;ClippingRankSum=0.069	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:48,6:54:99.0:104,0,2005:6:11:54:1:.:.:.:.:.:-0.00471738	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-27.8757
chr6	157405930	.	G	A	8945.48	REJECT	NS=2;DP=348;DPB=389.0;AC=2;AN=4;AF=0.5;RO=89;AO=300;PRO=0.0;PAO=0.0;QR=3431;QA=11192;PQR=0.0;PQA=0.0;SRF=47;SRR=42;SAF=147;SAR=153;SRP=3.62026;SAP=3.27088;AB=0.771208;ABP=251.535;RUN=1;RPP=3.27088;RPPR=8.49998;RPL=147.0;RPR=153.0;EPP=8.68508;EPPR=7.13366;DPRA=0.0;ODDS=190.111;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1635;Dels=0.0;FS=0.62;HaplotypeScore=7.8318;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.085;QD=24.84;ReadPosRankSum=0.2385;SOR=0.702;ClippingRankSum=0.75	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.695:80:41:1575:40:1518:-114.722,0.0,-119.848:39:49:80:40,39:1425,0,1447:1:.:1:.:.:.:-0.000165765	0/1:118.695:307:48:1856:260:9674:-786.757,0.0,-83.6139:260:84:307:47,260:9851,0,1132:.:1:1:.:.:.:-0.0210182
chr6	157507504	.	C	T	1526.1	REJECT	NS=2;DP=251;DPB=289.0;AC=2;AN=4;AF=0.5;RO=217;AO=72;PRO=0.0;PAO=0.0;QR=8433;QA=2762;PQR=0.0;PQA=0.0;SRF=182;SRR=35;SAF=58;SAR=14;SRP=219.247;SAP=61.3988;AB=0.249135;ABP=160.987;RUN=1;RPP=10.7311;RPPR=5.90226;RPL=28.0;RPR=44.0;EPP=15.074;EPPR=3.50063;DPRA=0.0;ODDS=101.379;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.197;Dels=0.0;FS=2.03;HaplotypeScore=3.9545;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1485;QD=11.5;ReadPosRankSum=-0.1535;SOR=0.465;ClippingRankSum=1.004	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.741:75:35:1356:41:1569:-120.67,0.0,-101.496:40:53:75:35,40:1513,0,1258:1:.:1:.:.:.:-0.000165765	0/1:122.741:213:182:7077:31:1193:-49.602,0.0,-578.925:31:15:213:182,31:710,0,7304:.:1:1:.:.:.:-0.0210182
chr6	157507698	.	G	C	2208.5299999999997	REJECT	NS=2;DP=490;DPB=568.0;AC=2;AN=4;AF=0.5;RO=451;AO=117;PRO=0.0;PAO=0.0;QR=17303;QA=4400;PQR=0.0;PQA=0.0;SRF=180;SRR=271;SAF=32;SAR=85;SRP=42.8816;SAP=55.1442;AB=0.205986;ABP=429.491;RUN=1;RPP=6.14687;RPPR=3.4003;RPL=65.0;RPR=52.0;EPP=3.17734;EPPR=6.52029;DPRA=0.0;ODDS=131.788;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.995565;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3635;Dels=0.0;FS=6.7455;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.046;QD=8.06;ReadPosRankSum=0.7065;SOR=1.401;ClippingRankSum=-0.5	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:152:89:3437:65:2479:-181.321,0.0,-267.538:64:42:152:88,63:2139,0,3153:1:.:1:.:.:.:-0.000165765	0/1:129.501:413:362:13866:52:1921:-60.6952,0.0,-1134.96:52:13:413:361,52:913,0,14187:.:1:1:.:.:.:-0.0210182
chr6	160453561	.	T	G	1279.24	REJECT	NS=2;DP=224;DPB=260.0;AC=2;AN=4;AF=0.5;RO=194;AO=66;PRO=0.0;PAO=0.0;QR=7417;QA=2568;PQR=0.0;PQA=0.0;SRF=144;SRR=50;SAF=47;SAR=19;SRP=101.913;SAP=28.8048;AB=0.253846;ABP=139.846;RUN=1;RPP=41.044;RPPR=119.464;RPL=16.0;RPR=50.0;EPP=3.53672;EPPR=6.63688;DPRA=0.0;ODDS=141.218;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7195;Dels=0.0;FS=1.6225;HaplotypeScore=6.8321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5155;QD=9.97;ReadPosRankSum=0.881;SOR=0.4455;ClippingRankSum=2.824	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:39:1505:33:1271:-94.9294,0.0,-115.996:33:46:71:37,33:1099,0,1367:1:.:1:.:.:.:-0.000165765	0/1:129.501:188:155:5912:33:1297:-65.7694,0.0,-480.947:33:18:188:155,33:901,0,6014:.:1:1:.:.:.:-0.0210182
chr6	160453978	.	A	G	2173.355	REJECT	NS=2;DP=332;DPB=383.0;AC=2;AN=4;AF=0.5;RO=279;AO=103;PRO=0.0;PAO=0.0;QR=10831;QA=3926;PQR=0.0;PQA=0.0;SRF=156;SRR=123;SAF=58;SAR=45;SRP=11.486;SAP=6.5732;AB=0.26893;ABP=180.634;RUN=1;RPP=4.71796;RPPR=8.68415;RPL=47.0;RPR=56.0;EPP=3.53736;EPPR=3.01808;DPRA=0.0;ODDS=190.473;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.309;Dels=0.0;FS=1.9865;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.032;QD=12.19;ReadPosRankSum=0.9365;SOR=0.564;ClippingRankSum=1.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:43:1659:56:2143:-166.067,0.0,-122.495:54:56:96:41,53:1939,0,1424:1:.:1:.:.:.:-0.000165765	0/1:129.501:282:236:9172:47:1783:-83.7198,0.0,-748.325:47:17:281:233,47:1167,0,9312:.:1:1:.:.:.:-0.0210182
chr6	160464289	.	G	A	1616.73	REJECT	NS=2;DP=344;DPB=391.0;AC=2;AN=4;AF=0.5;RO=307;AO=84;PRO=0.0;PAO=0.0;QR=11624;QA=3109;PQR=0.0;PQA=0.0;SRF=151;SRR=156;SAF=43;SAR=41;SRP=3.18713;SAP=3.1137;AB=0.214834;ABP=279.187;RUN=1;RPP=3.1137;RPPR=3.58323;RPL=41.0;RPR=43.0;EPP=4.66476;EPPR=3.86616;DPRA=0.0;ODDS=96.7407;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988095;PAIREDR=0.996743;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3015;Dels=0.0;FS=0.392;HaplotypeScore=2.9653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1525;QD=9.41;ReadPosRankSum=-0.4625;SOR=0.689;ClippingRankSum=-1.419	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:45:1696:48:1748:-132.144,0.0,-127.525:48:52:92:44,48:1579,0,1521:1:.:1:.:.:.:-0.000165765	0/1:129.501:298:262:9928:36:1361:-41.7949,0.0,-812.286:36:12:298:262,36:670,0,10150:.:1:1:.:.:.:-0.0210182
chr6	160468278	.	A	G	13672.0	REJECT	NS=2;DP=372;DPB=425.0;AC=4;AN=4;AF=1.0;RO=2;AO=422;PRO=0.0;PAO=0.0;QR=78;QA=15850;PQR=0.0;PQA=0.0;SRF=1;SRR=1;SAF=233;SAR=189;SRP=3.0103;SAP=12.9723;AB=0.0;ABP=0.0;RUN=1;RPP=5.97421;RPPR=3.0103;RPL=223.0;RPR=199.0;EPP=7.6414;EPPR=7.35324;DPRA=0.0;ODDS=68.5748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995261;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.617;Dels=0.0;FS=0.0;HaplotypeScore=6.8008;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.326;QD=32.275;ReadPosRankSum=0.065;SOR=0.9705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:103:3878:-349.069,-27.9066,0.0:103:100:103:0,103:4090,309,0:1:.:1:.:.:.:-0.000165765	1/1:129.501:320:2:78:319:11972:-1069.73,-79.8222,0.0:318:99:320:2,318:13232,849,0:.:1:1:.:.:.:-0.0210182
chr6	160468383	.	T	C	9374.220000000001	REJECT	NS=2;DP=249;DPB=293.0;AC=4;AN=4;AF=1.0;RO=0;AO=293;PRO=0.0;PAO=0.0;QR=0;QA=11197;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=116;SAR=177;SRP=0.0;SAP=30.5873;AB=0.0;ABP=0.0;RUN=1;RPP=97.6435;RPPR=0.0;RPL=203.0;RPR=90.0;EPP=5.15213;EPPR=0.0;DPRA=0.0;ODDS=57.3183;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989761;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.93;SOR=1.1485	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:85:3212:-289.159,-23.0179,0.0:83:100:83:0,82:3350,246,0:1:.:1:.:.:.:-0.000165765	1/1:129.501:207:0:0:208:7985:-718.363,-56.3553,0.0:207:100:207:0,206:8868,617,0:.:1:1:.:.:.:-0.0210182
chr6	160494409	.	A	G	13352.599999999999	REJECT	NS=2;DP=355;DPB=412.0;AC=4;AN=4;AF=1.0;RO=0;AO=412;PRO=0.0;PAO=0.0;QR=0;QA=15640;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=158;SAR=254;SRP=0.0;SAP=51.5838;AB=0.0;ABP=0.0;RUN=1;RPP=4.71796;RPPR=0.0;RPL=197.0;RPR=215.0;EPP=12.3076;EPPR=0.0;DPRA=0.0;ODDS=74.1248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995146;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8461;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.645;SOR=1.232	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:112:4173:-375.558,-30.3169,0.0:110:100:110:0,108:4282,323,0:1:.:1:.:.:.:-0.000165765	1/1:129.501:299:0:0:300:11467:-1031.39,-81.2225,0.0:299:100:299:0,299:12766,885,0:.:1:1:.:.:.:-0.0210182
chr6	160505199	.	C	G	11116.45	REJECT	NS=2;DP=295;DPB=342.0;AC=4;AN=4;AF=1.0;RO=0;AO=342;PRO=0.0;PAO=0.0;QR=0;QA=13083;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=127;SAR=215;SRP=0.0;SAP=52.1795;AB=0.0;ABP=0.0;RUN=1;RPP=12.1787;RPPR=0.0;RPL=190.0;RPR=152.0;EPP=13.1692;EPPR=0.0;DPRA=0.0;ODDS=62.9896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.9062;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.105;SOR=1.3305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:94:3602:-324.256,-25.481,0.0:91:100:91:0,89:3801,268,0:1:.:1:.:.:.:-0.000165765	1/1:129.501:248:0:0:248:9481:-852.837,-67.16,0.0:248:100:248:0,248:10600,734,0:.:1:1:.:.:.:-0.0210182
chr6	160505207	.	A	G	1322.8	REJECT	NS=2;DP=294;DPB=342.0;AC=2;AN=4;AF=0.5;RO=270;AO=71;PRO=0.0;PAO=0.0;QR=10065;QA=2710;PQR=0.0;PQA=0.0;SRF=86;SRR=184;SAF=30;SAR=41;SRP=80.2504;SAP=6.71098;AB=0.207602;ABP=256.984;RUN=1;RPP=5.48761;RPPR=9.31561;RPL=40.0;RPR=31.0;EPP=3.28556;EPPR=18.5806;DPRA=0.0;ODDS=112.534;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.7545;Dels=0.0;FS=6.1625;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2365;QD=8.005;ReadPosRankSum=-0.607;SOR=0.3035;ClippingRankSum=-0.402	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:57:2090:38:1422:-102.263,0.0,-162.446:37:40:92:53,37:1219,0,1811:1:.:1:.:.:.:-0.000165765	0/1:129.501:247:213:7975:33:1288:-49.2353,0.0,-650.818:33:13:246:213,33:714,0,8197:.:1:1:.:.:.:-0.0210182
chr6	160514246	.	A	G	8465.93	REJECT	NS=2;DP=412;DPB=472.0;AC=3;AN=4;AF=0.75;RO=161;AO=311;PRO=0.0;PAO=0.0;QR=6193;QA=11926;PQR=0.0;PQA=0.0;SRF=91;SRR=70;SAF=153;SAR=158;SRP=8.95825;SAP=3.18486;AB=0.543909;ABP=8.92187;RUN=1;RPP=3.18486;RPPR=6.04497;RPL=153.0;RPR=158.0;EPP=6.7039;EPPR=3.34749;DPRA=0.0;ODDS=75.1323;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993569;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.464;Dels=0.0;FS=2.7355;HaplotypeScore=4.923;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.07;QD=27.27;ReadPosRankSum=-0.524;SOR=0.6555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.0205:118:0:0:119:4461:-401.441,-32.2036,0.0:118:100:118:0,118:4606,353,0:1:.:1:.:.:.:-0.000165765	0/1:120.0205:352:161:6193:192:7465:-575.782,0.0,-461.407:191:54:352:161,191:7251,0,5872:.:1:1:.:.:.:-0.0210182
chr6	160517481	.	C	T	1357.165	REJECT	NS=2;DP=326;DPB=370.0;AC=2;AN=4;AF=0.5;RO=293;AO=75;PRO=0.0;PAO=0.0;QR=11347;QA=2863;PQR=0.0;PQA=0.0;SRF=191;SRR=102;SAF=49;SAR=26;SRP=61.7142;SAP=18.3264;AB=0.202703;ABP=287.062;RUN=1;RPP=3.27088;RPPR=4.26279;RPL=36.0;RPR=39.0;EPP=7.90335;EPPR=14.2827;DPRA=0.0;ODDS=135.238;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996587;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6665;Dels=0.0;FS=0.4485;HaplotypeScore=5.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4395;QD=8.465;ReadPosRankSum=-0.3555;SOR=0.609;ClippingRankSum=0.29	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3675:86:52:2015:35:1344:-97.4195,0.0,-157.811:35:40:86:50,35:1234,0,1834:1:.:1:.:.:.:-0.000165765	0/1:117.3675:283:241:9332:40:1519:-60.895,0.0,-763.262:40:14:281:241,40:852,0,9617:.:1:1:.:.:.:-0.0210182
chr6	160524773	.	T	A	4590.4	REJECT	NS=2;DP=333;DPB=378.0;AC=2;AN=4;AF=0.5;RO=210;AO=168;PRO=0.0;PAO=0.0;QR=7901;QA=6332;PQR=0.0;PQA=0.0;SRF=107;SRR=103;SAF=92;SAR=76;SRP=3.17575;SAP=6.31921;AB=0.444444;ABP=13.1438;RUN=1;RPP=10.4553;RPPR=40.2355;RPL=72.0;RPR=96.0;EPP=3.21711;EPPR=8.01503;DPRA=0.0;ODDS=245.324;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994048;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.598;Dels=0.0;FS=2.3785;HaplotypeScore=10.7786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.718;QD=14.915;ReadPosRankSum=-0.1365;SOR=0.8365;ClippingRankSum=-0.072	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.3925:89:51:1941:39:1462:-107.223,0.0,-150.357:38:43:89:50,38:1256,0,1842:1:.:1:.:.:.:-0.000165765	0/1:128.3925:288:159:5960:129:4870:-360.508,0.0,-458.122:129:45:288:159,129:4602,0,5771:.:1:1:.:.:.:-0.0210182
chr6	160670282	.	A	C	13484.7	REJECT	NS=2;DP=362;DPB=416.0;AC=4;AN=4;AF=1.0;RO=1;AO=415;PRO=0.0;PAO=0.0;QR=16;QA=15716;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=233;SAR=182;SRP=5.18177;SAP=16.6199;AB=0.0;ABP=0.0;RUN=1;RPP=39.0567;RPPR=5.18177;RPL=249.0;RPR=166.0;EPP=42.6148;EPPR=5.18177;DPRA=0.0;ODDS=69.8213;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992771;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.62;Dels=0.0;FS=0.0;HaplotypeScore=11.6222;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.846;QD=31.96;ReadPosRankSum=0.566;SOR=0.658	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:105:3962:-356.614,-28.448,0.0:104:100:104:0,103:4043,309,0:1:.:1:.:.:.:-0.000165765	1/1:129.501:310:1:16:310:11754:-1055.72,-82.7174,0.0:309:100:310:1,308:12997,900,0:.:1:1:.:.:.:-0.0210182
chr6	161807855	.	C	G	10026.2	REJECT	NS=2;DP=392;DPB=452.0;AC=2;AN=4;AF=0.5;RO=125;AO=327;PRO=0.0;PAO=0.0;QR=4812;QA=12594;PQR=0.0;PQA=0.0;SRF=61;SRR=64;SAF=154;SAR=173;SRP=3.16665;SAP=5.40755;AB=0.723451;ABP=199.039;RUN=1;RPP=6.52317;RPPR=5.11229;RPL=152.0;RPR=175.0;EPP=11.145;EPPR=9.28151;DPRA=0.0;ODDS=322.146;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.747;Dels=0.0;FS=0.7355;HaplotypeScore=4.7847;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.059;QD=24.305;ReadPosRankSum=-0.7435;SOR=0.791;ClippingRankSum=-0.253	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:58:2237:61:2343:-178.601,0.0,-169.089:60:50:118:58,59:2043,0,1938:1:.:1:.:.:.:-0.000165765	0/1:129.501:333:67:2575:266:10251:-831.786,0.0,-141.427:266:80:333:67,266:10482,0,1901:.:1:1:.:.:.:-0.0210182
chr6	161990483	.	C	T	9546.505000000001	REJECT	NS=2;DP=257;DPB=295.0;AC=4;AN=4;AF=1.0;RO=0;AO=295;PRO=0.0;PAO=0.0;QR=0;QA=11201;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=97;SAR=198;SRP=0.0;SAP=78.0991;AB=0.0;ABP=0.0;RUN=1;RPP=149.353;RPPR=0.0;RPL=218.0;RPR=77.0;EPP=3.60653;EPPR=0.0;DPRA=0.0;ODDS=51.0656;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.285;SOR=1.7475	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.438:74:0:0:75:2817:-253.627,-20.3024,0.0:74:100:74:0,74:3005,221,0:1:.:1:.:.:.:-0.000165765	1/1:123.438:220:0:0:220:8384:-754.186,-59.5562,0.0:220:100:220:0,220:9312,644,0:.:1:1:.:.:.:-0.0210182
chr6	162622304	.	A	G	4123.185	REJECT	NS=2;DP=243;DPB=283.0;AC=2;AN=4;AF=0.5;RO=134;AO=149;PRO=0.0;PAO=0.0;QR=5168;QA=5640;PQR=0.0;PQA=0.0;SRF=35;SRR=99;SAF=44;SAR=105;SRP=69.3861;SAP=57.2388;AB=0.526502;ABP=4.73674;RUN=1;RPP=40.9163;RPPR=24.012;RPL=100.0;RPR=49.0;EPP=3.02487;EPPR=6.18648;DPRA=0.0;ODDS=236.017;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977612;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.845;Dels=0.0;FS=1.837;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6655;QD=18.505;ReadPosRankSum=-0.535;SOR=0.621;ClippingRankSum=0.988	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:75:40:1553:37:1388:-104.097,0.0,-118.972:36:48:75:37,36:1283,0,1340:1:.:1:.:.:.:-0.000165765	0/1:129.501:205:94:3615:112:4252:-326.709,0.0,-269.429:112:54:205:92,112:4119,0,3372:.:1:1:.:.:.:-0.0210182
chr6	162683814	.	T	A	85.0023	REJECT	NS=2;DP=64;DPB=108.516;AC=2;AN=2;AF=0.0;RO=14;AO=11;PRO=46.0;PAO=0.0;QR=520;QA=167;PQR=1598.17;PQA=0.0;SRF=0;SRR=14;SAF=0;SAR=11;SRP=33.4109;SAP=26.8965;AB=0.171875;ABP=62.8615;RUN=1;RPP=7.94546;RPPR=3.0103;RPL=8.0;RPR=3.0;EPP=7.94546;EPPR=3.0103;DPRA=0.0;ODDS=1.94989;GTI=0;TYPE=snp;CIGAR=1X30M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=58.0909;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.0565:20:6:220:1:14:-9.45187,-37.2254,-341.415:1:6:17:.:.:1:.:.:.:-0.000165765	./1:9.03184:44:8:300:10:153:-9.2474,-86.1879,-1001.63:10:28:36:.:.:1:.:.:.:-0.0210182
chr6	162683814	.	TA	T	85.0023	REJECT	NS=2;DP=64;DPB=108.516;AC=2;AN=4;AF=0.5;RO=14;AO=13;PRO=46.0;PAO=33.0;QR=520;QA=260;PQR=1598.17;PQA=1004.17;SRF=0;SRR=14;SAF=0;SAR=13;SRP=33.4109;SAP=31.2394;AB=0.203125;ABP=52.0041;RUN=1;RPP=16.5402;RPPR=3.0103;RPL=11.0;RPR=2.0;EPP=16.5402;EPPR=3.0103;DPRA=0.0;ODDS=1.94989;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:73.0565:20:6:220:4:98:-9.45187,0.0,-31.5951:4:24:17:.:.:1:.:.:.:-0.000165765	0/1:9.03184:44:8:300:9:162:-9.2474,0.0,-64.1782:9:25:36:.:.:1:.:.:.:-0.0210182
chr6	162683814	.	TAA	T	85.0023	REJECT	NS=2;DP=64;DPB=108.516;AC=2;AN=2;AF=0.0;RO=14;AO=7;PRO=46.0;PAO=26.0;QR=520;QA=112;PQR=1598.17;PQA=873.667;SRF=0;SRR=14;SAF=0;SAR=7;SRP=33.4109;SAP=18.2106;AB=0.109375;ABP=87.8334;RUN=1;RPP=18.2106;RPPR=3.0103;RPL=7.0;RPR=0.0;EPP=18.2106;EPPR=3.0103;DPRA=0.0;ODDS=1.94989;GTI=0;TYPE=del;CIGAR=1M2D28M;NUMALT=4;MEANALT=8.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.0565:20:6:220:4:64:-9.45187,-7.75112,-40.4062:4:24:17:.:.:1:.:.:.:-0.000165765	./1:9.03184:44:8:300:3:48:-9.2474,-11.8848,-90.2157:3:8:36:.:.:1:.:.:.:-0.0210182
chr6	162683814	.	TAAA	T	85.0023	REJECT	NS=2;DP=64;DPB=108.516;AC=2;AN=2;AF=0.0;RO=14;AO=8;PRO=46.0;PAO=25.0;QR=520;QA=175;PQR=1598.17;PQA=856.0;SRF=0;SRR=14;SAF=1;SAR=7;SRP=33.4109;SAP=12.7819;AB=0.125;ABP=81.1833;RUN=1;RPP=12.7819;RPPR=3.0103;RPL=7.0;RPR=1.0;EPP=7.35324;EPPR=3.0103;DPRA=0.0;ODDS=1.94989;GTI=0;TYPE=del;CIGAR=1M3D27M;NUMALT=4;MEANALT=8.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.0565:20:6:220:2:32:-9.45187,-10.9086,-52.7394:2:12:17:.:.:1:.:.:.:-0.000165765	./1:9.03184:44:8:300:6:143:-9.2474,-4.50629,-96.5987:6:17:36:.:.:1:.:.:.:-0.0210182
chr6	162864317	.	A	G	3645.72	REJECT	NS=2;DP=206;DPB=236.0;AC=2;AN=4;AF=0.5;RO=108;AO=128;PRO=0.0;PAO=0.0;QR=4226;QA=4962;PQR=0.0;PQA=0.0;SRF=71;SRR=37;SAF=92;SAR=36;SRP=26.2531;SAP=56.2114;AB=0.542373;ABP=6.69076;RUN=1;RPP=68.2223;RPPR=57.3775;RPL=33.0;RPR=95.0;EPP=3.62103;EPPR=6.95112;DPRA=0.0;ODDS=169.06;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976562;PAIREDR=0.972222;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4395;Dels=0.0;FS=3.357;HaplotypeScore=3.9648;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4715;QD=19.915;ReadPosRankSum=0.8305;SOR=1.21;ClippingRankSum=1.09	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:26:1009:31:1195:-92.1939,0.0,-75.4306:30:54:56:25,30:1098,0,923:1:.:1:.:.:.:-0.000165765	0/1:129.501:178:82:3217:97:3767:-290.401,0.0,-240.907:97:54:178:80,97:3697,0,2987:.:1:1:.:.:.:-0.0210182
chr6	163092529	.	C	A	28.9587	REJECT	NS=1;DP=47;DPB=99.4138;AC=1;AN=3;AF=0.0;RO=12;AO=3;PRO=44.9833;PAO=14.2333;QR=425;QA=43;PQR=1579.8;PQA=479.55;SRF=6;SRR=6;SAF=0;SAR=3;SRP=3.0103;SAP=9.52472;AB=0.0638298;ABP=80.6751;RUN=1;RPP=9.52472;RPPR=21.1059;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=3.73412;DPRA=0.0;ODDS=6.66672;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=4;MEANALT=20.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.9587:47:12:425:3:43:-6.72202,-28.4936,-294.596:3:10:30:.:.:1:.:.:.:-0.000165765	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0210182
chr6	163092529	.	CA	C	28.9587	REJECT	NS=1;DP=47;DPB=99.4138;AC=1;AN=4;AF=0.5;RO=12;AO=9;PRO=44.9833;PAO=17.4833;QR=425;QA=224;PQR=1579.8;PQA=600.8;SRF=6;SRR=6;SAF=4;SAR=5;SRP=3.0103;SAP=3.25157;AB=0.191489;ABP=41.8658;RUN=1;RPP=3.25157;RPPR=21.1059;RPL=4.0;RPR=5.0;EPP=3.25157;EPPR=3.73412;DPRA=0.0;ODDS=6.66672;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=4;MEANALT=20.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.888889;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.032;FS=5.198;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=1.636;QD=4.96;ReadPosRankSum=1.754;SOR=1.765;ClippingRankSum=0.61	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:63.97935:45:12:425:9:224:-6.72202,0.0,-107.455:16:41:37:21,23:325,0,246:1:.:1:.:.:.:-0.000165765	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0210182
chr6	163092529	.	CAA	C	28.9587	REJECT	NS=1;DP=47;DPB=99.4138;AC=1;AN=3;AF=0.0;RO=12;AO=3;PRO=44.9833;PAO=16.15;QR=425;QA=89;PQR=1579.8;PQA=550.8;SRF=6;SRR=6;SAF=2;SAR=1;SRP=3.0103;SAP=3.73412;AB=0.0638298;ABP=80.6751;RUN=1;RPP=9.52472;RPPR=21.1059;RPL=0.0;RPR=3.0;EPP=3.73412;EPPR=3.73412;DPRA=0.0;ODDS=6.66672;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=4;MEANALT=20.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.9587:47:12:425:3:89:-6.72202,-13.7798,-159.014:3:10:30:.:.:1:.:.:.:-0.000165765	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0210182
chr6	163092547	.	AGAGT	GAGA	28.9587	REJECT	NS=1;DP=47;DPB=99.4138;AC=1;AN=3;AF=0.0;RO=12;AO=3;PRO=44.9833;PAO=8.15;QR=425;QA=48;PQR=1579.8;PQA=216.05;SRF=6;SRR=6;SAF=3;SAR=0;SRP=3.0103;SAP=9.52472;AB=0.0638298;ABP=80.6751;RUN=1;RPP=3.73412;RPPR=21.1059;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=3.73412;DPRA=0.0;ODDS=6.66672;GTI=0;TYPE=complex;CIGAR=1M1D20M1X6M;NUMALT=4;MEANALT=20.0;LEN=28;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.9587:47:12:425:3:48:-6.72202,-60.5738,-709.997:3:10:30:.:.:1:.:.:.:-0.000165765	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0210182
chr6	168043333	.	G	A	3488.26	PASS	SOMATIC;NS=2;DP=431;DPB=431.0;AC=1;AN=3;AF=0.25;RO=302;AO=129;PRO=0.0;PAO=0.0;QR=11443;QA=4910;PQR=0.0;PQA=0.0;SRF=127;SRR=175;SAF=62;SAR=67;SRP=19.5768;SAP=3.43113;AB=0.401869;ABP=29.8594;RUN=1;RPP=3.02713;RPPR=5.33996;RPL=65.0;RPR=64.0;EPP=11.915;EPPR=4.0457;DPRA=2.91818;ODDS=69.5239;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984496;PAIREDR=0.980132;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.882;Dels=0.0;FS=6.023;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.376;QD=14.1;ReadPosRankSum=-1.578;SOR=0.46	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:107:110:4095:0:0:0.0,-29.7679,-368.541:0:0:107:105,0:.:0.0:0:.:.:.:0:.:.:0:-0.000165765	0/1:129.501:317:192:7348:129:4910:-355.095,0.0,-573.984:128:40:317:184,124:38.0:0.401:2:4497,0,7133:.:1:1:.:.:1:-0.0210182
chr6	169540853	.	A	G	7888.27	REJECT	NS=2;DP=287;DPB=335.0;AC=2;AN=4;AF=0.5;RO=78;AO=257;PRO=0.0;PAO=0.0;QR=2902;QA=9951;PQR=0.0;PQA=0.0;SRF=47;SRR=31;SAF=167;SAR=90;SRP=10.1372;SAP=53.1063;AB=0.767164;ABP=210.7;RUN=1;RPP=38.7086;RPPR=8.46682;RPL=96.0;RPR=161.0;EPP=11.1301;EPPR=14.1461;DPRA=0.0;ODDS=113.448;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996109;PAIREDR=0.987179;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.086;Dels=0.0;FS=3.5025;HaplotypeScore=5.8987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1675;QD=26.215;ReadPosRankSum=-0.4585;SOR=0.9535;ClippingRankSum=-1.027	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:45:1616:49:1868:-142.717,0.0,-120.017:49:52:93:44,49:1671,0,1421:1:.:1:.:.:.:-0.000165765	0/1:129.501:240:33:1286:208:8083:-661.793,0.0,-50.3822:207:86:240:32,207:8339,0,680:.:1:1:.:.:.:-0.0210182
chr7	2962753	.	G	A	2117.27	REJECT	NS=1;DP=64;DPB=64.0;AC=2;AN=4;AF=1.0;RO=0;AO=64;PRO=0.0;PAO=0.0;QR=0;QA=2442;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=49;SAR=15;SRP=0.0;SAP=42.2325;AB=0.0;ABP=0.0;RUN=1;RPP=14.0034;RPPR=0.0;RPL=23.0;RPR=41.0;EPP=3.55317;EPPR=0.0;DPRA=0.0;ODDS=44.5653;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.984375;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.3;SOR=2.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.1775:63:0:0:64:2442:-219.946,-17.3545,0.0:63:100:63:0,62:2607,186,0:1:.:1:.:.:.:0.00107257	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.103856
chr7	2966445	.	T	G	1769.745	REJECT	NS=2;DP=339;DPB=385.0;AC=2;AN=4;AF=0.5;RO=290;AO=90;PRO=0.0;PAO=0.0;QR=10160;QA=3355;PQR=0.0;PQA=0.0;SRF=93;SRR=197;SAF=34;SAR=56;SRP=83.9987;SAP=14.688;AB=0.233766;ABP=240.039;RUN=1;RPP=5.42305;RPPR=4.92719;RPL=50.0;RPR=40.0;EPP=5.42305;EPPR=5.43636;DPRA=0.0;ODDS=137.54;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.996552;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5365;Dels=0.0;FS=0.3405;HaplotypeScore=13.6006;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.2685;QD=10.325;ReadPosRankSum=0.7905;SOR=0.5735;ClippingRankSum=2.471	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:43:1504:48:1806:-137.943,0.0,-110.766:48:53:90:42,48:1644,0,1325:1:.:1:.:.:.:0.00107257	0/1:129.501:294:247:8656:42:1549:-61.6036,0.0,-700.517:42:15:289:247,42:879,0,8783:.:1:1:.:.:.:-0.103856
chr7	2969680	.	G	A	1688.3600000000001	REJECT	NS=2;DP=379;DPB=433.0;AC=2;AN=4;AF=0.5;RO=341;AO=90;PRO=0.0;PAO=0.0;QR=13130;QA=3413;PQR=0.0;PQA=0.0;SRF=163;SRR=178;SAF=39;SAR=51;SRP=4.44309;SAP=6.48466;AB=0.207852;ABP=324.012;RUN=1;RPP=5.42305;RPPR=5.81857;RPL=40.0;RPR=50.0;EPP=6.48466;EPPR=8.36575;DPRA=0.0;ODDS=126.275;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997067;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.393;Dels=0.0;FS=1.4175;HaplotypeScore=15.6771;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.945;QD=8.45;ReadPosRankSum=0.154;SOR=0.7625;ClippingRankSum=-1.286	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:57:2227:49:1819:-134.998,0.0,-171.724:49:46:106:57,49:1558,0,2140:1:.:1:.:.:.:0.00107257	0/1:129.501:326:284:10903:41:1594:-56.1564,0.0,-892.597:41:13:324:283,41:835,0,11167:.:1:1:.:.:.:-0.103856
chr7	2976767	.	G	A	2159.5	REJECT	NS=2;DP=387;DPB=451.0;AC=2;AN=4;AF=0.5;RO=344;AO=106;PRO=0.0;PAO=0.0;QR=13237;QA=4092;PQR=0.0;PQA=0.0;SRF=173;SRR=171;SAF=48;SAR=58;SRP=3.03555;SAP=5.05886;AB=0.235033;ABP=278.036;RUN=1;RPP=3.0103;RPPR=27.2752;RPL=53.0;RPR=53.0;EPP=5.96022;EPPR=3.1113;DPRA=0.0;ODDS=186.554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994186;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0795;Dels=0.0;FS=6.799;HaplotypeScore=2.9945;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.139;QD=9.66;ReadPosRankSum=1.1545;SOR=0.695;ClippingRankSum=0.383	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:124:69:2645:57:2204:-164.193,0.0,-203.89:56:45:123:66,55:1946,0,2328:1:.:1:.:.:.:0.00107257	0/1:129.501:324:275:10592:49:1888:-82.0616,0.0,-864.903:49:15:324:275,49:1153,0,10895:.:1:1:.:.:.:-0.103856
chr7	6013049	.	C	G	1190.62	REJECT	NS=1;DP=99;DPB=99.0;AC=1;AN=4;AF=0.5;RO=39;AO=60;PRO=0.0;PAO=0.0;QR=1505;QA=2307;PQR=0.0;PQA=0.0;SRF=0;SRR=39;SAF=0;SAR=60;SRP=87.6977;SAP=133.299;AB=0.606061;ABP=12.6832;RUN=1;RPP=4.31318;RPPR=4.40227;RPL=27.0;RPR=33.0;EPP=4.31318;EPPR=4.40227;DPRA=0.0;ODDS=166.193;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=33.5;MQMR=35.3077;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.614;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=37.2;MQRankSum=1.275;QD=20.85;ReadPosRankSum=-0.773;SOR=1.141;ClippingRankSum=1.007	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.251:94:39:1505:60:2307:-141.358,0.0,-87.9818:56:60:94:36,53:1884,0,1225:1:.:1:.:.:.:0.00107257	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.103856
chr7	6026775	.	T	C	11761.5	REJECT	NS=2;DP=330;DPB=372.0;AC=4;AN=4;AF=1.0;RO=0;AO=372;PRO=0.0;PAO=0.0;QR=0;QA=14216;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=162;SAR=210;SRP=0.0;SAP=16.4594;AB=0.0;ABP=0.0;RUN=1;RPP=3.1037;RPPR=0.0;RPL=184.0;RPR=188.0;EPP=8.98769;EPPR=0.0;DPRA=0.0;ODDS=57.2874;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.5376;MQMR=0.0;PAIRED=0.997312;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=4;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=49.345;QD=27.335;SOR=1.0345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:87:3284:-274.516,-23.0046,0.0:86:100:86:0,85:3367,254,0:1:.:1:.:.:.:0.00107257	1/1:129.501:287:0:0:285:10932:-916.603,-76.4688,0.0:287:100:287:0,289:11701,831,0:.:1:1:.:.:.:-0.103856
chr7	6036980	.	G	C	12167.3	REJECT	NS=2;DP=333;DPB=382.0;AC=4;AN=4;AF=1.0;RO=0;AO=382;PRO=0.0;PAO=0.0;QR=0;QA=14156;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=222;SAR=160;SRP=0.0;SAP=24.8615;AB=0.0;ABP=0.0;RUN=1;RPP=19.5863;RPPR=0.0;RPL=164.0;RPR=218.0;EPP=24.8615;EPPR=0.0;DPRA=0.0;ODDS=64.7352;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0393;MQMR=0.0;PAIRED=0.997382;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8211;MLEAC=2;MLEAF=1.0;MQ=60.065;QD=32.24;SOR=1.199	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.2035:96:0:0:97:3534:-318.1,-26.2391,0.0:96:100:96:0,95:3717,284,0:1:.:1:.:.:.:0.00107257	1/1:127.2035:284:0:0:285:10622:-955.387,-77.0944,0.0:284:100:284:0,284:11730,822,0:.:1:1:.:.:.:-0.103856
chr7	6037057	.	G	A	1016.24	REJECT	NS=2;DP=184;DPB=233.44;AC=2;AN=2;AF=0.0;RO=59;AO=9;PRO=31.7667;PAO=0.0;QR=2171;QA=129;PQR=1144.02;PQA=0.0;SRF=11;SRR=48;SAF=0;SAR=9;SRP=53.3958;SAP=22.5536;AB=0.048913;ABP=328.212;RUN=1;RPP=3.25157;RPPR=7.46366;RPL=4.0;RPR=5.0;EPP=3.25157;EPPR=3.34154;DPRA=0.0;ODDS=74.2522;GTI=0;TYPE=snp;CIGAR=1X24M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:46:16:586:2:29:-41.3295,-72.076,-427.207:2:5:44:.:.:1:.:.:.:0.00107257	./1:160.002:138:43:1585:7:100:-73.4514,-158.691,-1167.89:7:6:125:.:.:1:.:.:.:-0.103856
chr7	6037057	.	G	GA	755.985	REJECT	NS=2;DP=184;DPB=233.44;AC=2;AN=4;AF=0.5;RO=59;AO=52;PRO=31.7667;PAO=23.2667;QR=2171;QA=1467;PQR=1144.02;PQA=826.017;SRF=11;SRR=48;SAF=6;SAR=46;SRP=53.3958;SAP=69.8248;AB=0.282609;ABP=78.5398;RUN=1;RPP=9.02361;RPPR=7.46366;RPL=32.0;RPR=20.0;EPP=3.0103;EPPR=3.34154;DPRA=0.0;ODDS=74.2522;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=59.9808;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.6095;FS=5.405;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-0.1075;QD=3.15;RPA=17,18;RU=A;ReadPosRankSum=0.456;SOR=1.412;STR;ClippingRankSum=-1.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:45:16:586:15:435:-41.3295,0.0,-46.4805:19:43:44:21,23:296,0,255:1:.:1:.:.:.:0.00107257	0/1:129.501:178:43:1585:37:1032:-73.4514,0.0,-156.354:48:34:139:95,59:533,0,1090:.:1:1:.:.:.:-0.103856
chr7	6037057	.	G	GAA	1016.24	REJECT	NS=2;DP=184;DPB=233.44;AC=2;AN=2;AF=0.0;RO=59;AO=13;PRO=31.7667;PAO=20.2667;QR=2171;QA=345;PQR=1144.02;PQA=703.017;SRF=11;SRR=48;SAF=0;SAR=13;SRP=53.3958;SAP=31.2394;AB=0.0706522;ABP=297.622;RUN=1;RPP=3.17734;RPPR=7.46366;RPL=6.0;RPR=7.0;EPP=3.17734;EPPR=3.34154;DPRA=0.0;ODDS=74.2522;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.923077;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:46:16:586:4:108:-41.3295,-32.4302,-82.4244:4:9:44:.:.:1:.:.:.:0.00107257	./1:160.002:138:43:1585:9:237:-73.4514,-68.2897,-232.412:9:7:125:.:.:1:.:.:.:-0.103856
chr7	6037057	.	GA	G	1016.24	REJECT	NS=2;DP=184;DPB=233.44;AC=2;AN=2;AF=0.0;RO=59;AO=32;PRO=31.7667;PAO=15.1;QR=2171;QA=880;PQR=1144.02;PQA=529.35;SRF=11;SRR=48;SAF=7;SAR=25;SRP=53.3958;SAP=24.9965;AB=0.173913;ABP=172.952;RUN=1;RPP=4.09604;RPPR=7.46366;RPL=18.0;RPR=14.0;EPP=9.79615;EPPR=3.34154;DPRA=0.0;ODDS=74.2522;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=59.375;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:46:16:586:4:131:-41.3295,-37.6638,-116.276:4:9:44:.:.:1:.:.:.:0.00107257	./1:160.002:138:43:1585:28:749:-73.4514,-35.3026,-292.319:28:22:125:.:.:1:.:.:.:-0.103856
chr7	6037057	.	GAA	G	1016.24	REJECT	NS=2;DP=184;DPB=233.44;AC=2;AN=2;AF=0.0;RO=59;AO=4;PRO=31.7667;PAO=14.6;QR=2171;QA=117;PQR=1144.02;PQA=500.6;SRF=11;SRR=48;SAF=0;SAR=4;SRP=53.3958;SAP=11.6962;AB=0.0217391;ABP=368.573;RUN=1;RPP=5.18177;RPPR=7.46366;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=3.34154;DPRA=0.0;ODDS=74.2522;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:46:16:586:3:79:-41.3295,-42.0768,-120.975:3:7:44:.:.:1:.:.:.:0.00107257	./1:160.002:138:43:1585:1:38:-73.4514,-95.1436,-382.758:1:1:125:.:.:1:.:.:.:-0.103856
chr7	6048556	.	G	A	737.233	REJECT	NS=1;DP=61;DPB=61.0;AC=1;AN=4;AF=0.5;RO=31;AO=30;PRO=0.0;PAO=0.0;QR=1140;QA=1083;PQR=0.0;PQA=0.0;SRF=19;SRR=12;SAF=16;SAR=14;SRP=6.44263;SAP=3.29983;AB=0.491803;ABP=3.0459;RUN=1;RPP=31.9633;RPPR=23.254;RPL=5.0;RPR=25.0;EPP=4.16842;EPPR=3.08035;DPRA=0.0;ODDS=169.754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.811;FS=2.212;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.747;QD=16.56;ReadPosRankSum=0.067;SOR=0.38;ClippingRankSum=-1.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:60:31:1140:30:1083:-81.4212,0.0,-86.1603:30:49:60:30,30:1022,0,1084:1:.:1:.:.:.:0.00107257	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-28.2138
chr7	6426941	.	C	T	1410.81	REJECT	NS=2;DP=278;DPB=326.0;AC=2;AN=4;AF=0.5;RO=257;AO=69;PRO=0.0;PAO=0.0;QR=9931;QA=2643;PQR=0.0;PQA=0.0;SRF=103;SRR=154;SAF=20;SAR=49;SRP=24.987;SAP=29.4771;AB=0.211656;ABP=238.435;RUN=1;RPP=4.55236;RPPR=15.8617;RPL=38.0;RPR=31.0;EPP=5.55942;EPPR=3.42432;DPRA=0.0;ODDS=54.6466;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985507;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.411;Dels=0.0;FS=6.9625;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6415;QD=8.74;ReadPosRankSum=0.447;SOR=1.223;ClippingRankSum=0.961	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:52:2031:44:1684:-125.559,0.0,-156.802:43:45:95:52,43:1554,0,1904:1:.:1:.:.:.:0.00107257	0/1:129.501:230:205:7900:25:959:-23.9732,0.0,-648.337:25:11:230:205,25:395,0,8132:.:1:1:.:.:.:-0.0261709
chr7	6426953	.	C	T	1192.98	REJECT	NS=2;DP=233;DPB=274.0;AC=2;AN=4;AF=0.5;RO=215;AO=59;PRO=0.0;PAO=0.0;QR=8178;QA=2253;PQR=0.0;PQA=0.0;SRF=86;SRR=129;SAF=18;SAR=41;SRP=21.685;SAP=22.4799;AB=0.215328;ABP=195.875;RUN=1;RPP=22.4799;RPPR=51.0958;RPL=41.0;RPR=18.0;EPP=3.93042;EPPR=3.2628;DPRA=0.0;ODDS=56.5215;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.767;Dels=0.0;FS=3.2195;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.345;QD=8.65;ReadPosRankSum=0.669;SOR=1.027;ClippingRankSum=0.366	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9435:81:45:1710:36:1391:-103.293,0.0,-132.0:36:44:81:45,36:1283,0,1626:1:.:1:.:.:.:0.00107257	0/1:118.9435:193:170:6468:23:862:-25.2805,0.0,-529.634:23:12:193:170,23:378,0,6670:.:1:1:.:.:.:-0.0261709
chr7	6431690	.	C	T	1423.93	REJECT	NS=1;DP=101;DPB=101.0;AC=1;AN=4;AF=0.5;RO=50;AO=51;PRO=0.0;PAO=0.0;QR=1940;QA=1969;PQR=0.0;PQA=0.0;SRF=15;SRR=35;SAF=23;SAR=28;SRP=20.3821;SAP=4.07475;AB=0.50495;ABP=3.0318;RUN=1;RPP=5.09662;RPPR=20.3821;RPL=29.0;RPR=22.0;EPP=25.534;EPPR=4.57376;DPRA=0.0;ODDS=319.456;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.960784;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.22;FS=6.758;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.328;QD=16.94;ReadPosRankSum=0.833;SOR=0.284;ClippingRankSum=-1.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.761:99:50:1940:51:1969:-149.852,0.0,-147.239:50:50:99:48,49:1705,0,1718:1:.:1:.:.:.:0.00107257	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0261709
chr7	6441670	.	T	C	2209.37	REJECT	NS=2;DP=370;DPB=428.0;AC=2;AN=4;AF=0.5;RO=325;AO=103;PRO=0.0;PAO=0.0;QR=12513;QA=3997;PQR=0.0;PQA=0.0;SRF=141;SRR=184;SAF=43;SAR=60;SRP=15.3643;SAP=9.10307;AB=0.240654;ABP=253.054;RUN=1;RPP=23.2703;RPPR=63.3104;RPL=67.0;RPR=36.0;EPP=3.53736;EPPR=3.33769;DPRA=0.0;ODDS=149.224;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8954;PAIRED=1.0;PAIREDR=0.993846;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4425;Dels=0.0;FS=1.0055;HaplotypeScore=7.8296;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.1385;QD=10.71;ReadPosRankSum=-0.349;SOR=0.82;ClippingRankSum=-0.565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.5425:113:54:2075:60:2316:-177.535,0.0,-155.54:59:53:113:53,59:2093,0,1950:1:.:1:.:.:.:0.00107257	0/1:123.5425:313:271:10438:43:1681:-66.1753,0.0,-853.751:43:14:313:270,43:962,0,10638:.:1:1:.:.:.:-0.0261709
chr7	9002588	.	A	G	3598.425	REJECT	NS=2;DP=236;DPB=268.0;AC=2;AN=4;AF=0.5;RO=136;AO=132;PRO=0.0;PAO=0.0;QR=5208;QA=5089;PQR=0.0;PQA=0.0;SRF=97;SRR=39;SAF=89;SAR=43;SRP=56.7223;SAP=37.8197;AB=0.492537;ABP=3.13994;RUN=1;RPP=79.0776;RPPR=76.8404;RPL=32.0;RPR=100.0;EPP=3.0761;EPPR=8.18351;DPRA=0.0;ODDS=165.533;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3735;Dels=0.0;FS=0.6045;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1355;QD=18.01;ReadPosRankSum=0.528;SOR=0.598;ClippingRankSum=-0.525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:62:27:1021:36:1371:-106.406,0.0,-74.8773:35:56:62:27,35:1236,0,963:1:.:1:.:.:.:0.00107257	0/1:129.501:205:109:4187:96:3718:-278.933,0.0,-321.143:96:47:205:109,96:3544,0,4076:.:1:1:.:.:.:-0.0261709
chr7	13504782	.	A	G	2896.22	PASS	SOMATIC;NS=2;DP=390;DPB=390.0;AC=1;AN=3;AF=0.25;RO=279;AO=111;PRO=0.0;PAO=0.0;QR=10686;QA=4197;PQR=0.0;PQA=0.0;SRF=163;SRR=116;SAF=68;SAR=43;SRP=20.2031;SAP=15.2371;AB=0.375;ABP=43.1825;RUN=1;RPP=15.2371;RPPR=37.9484;RPL=43.0;RPR=68.0;EPP=3.49937;EPPR=5.81998;DPRA=3.14894;ODDS=59.5869;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.955;MQMR=60.0;PAIRED=0.972973;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.092;Dels=0.0;FS=4.158;HaplotypeScore=15.5213;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.54;QD=12.47;ReadPosRankSum=1.097;SOR=0.982	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.584:92:94:3571:0:0:0.0,-25.4523,-321.428:0:0:92:91,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:119.292:293:185:7115:111:4197:-297.355,0.0,-559.832:108:37:293:181,106:38.0:0.369:2:3682,0,7077:.:1:1:.:.:1:-0.0261709
chr7	18668959	.	G	T	709.678	REJECT	NS=2;DP=235;DPB=242.0;AC=2;AN=2;AF=0.0;RO=199;AO=15;PRO=7.5;PAO=7.5;QR=6260;QA=205;PQR=104.5;PQA=104.5;SRF=129;SRR=70;SAF=15;SAR=0;SRP=40.9947;SAP=35.5824;AB=0.0638298;ABP=391.334;RUN=1;RPP=3.15506;RPPR=105.681;RPL=7.0;RPR=8.0;EPP=3.15506;EPPR=5.46548;DPRA=0.0;ODDS=8.31989;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984925;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:36.1339:56:47:1502:4:58:-4.77295,-13.3426,-134.94:4:7:55:.:.:1:.:.:.:0.00107257	./1:160.002:179:152:4758:11:147:-74.648,-105.434,-490.442:11:6:171:.:.:1:.:.:.:-0.0261709
chr7	18668959	.	GTC	TTT	709.678	REJECT	NS=2;DP=235;DPB=242.0;AC=2;AN=4;AF=0.5;RO=199;AO=12;PRO=7.5;PAO=0.0;QR=6260;QA=165;PQR=104.5;PQA=0.0;SRF=129;SRR=70;SAF=12;SAR=0;SRP=40.9947;SAP=29.068;AB=0.0510638;ABP=414.398;RUN=1;RPP=9.52472;RPPR=105.681;RPL=9.0;RPR=3.0;EPP=9.52472;EPPR=5.46548;DPRA=0.0;ODDS=8.31989;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=2;MEANALT=3.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984925;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:36.1339:56:47:1502:4:58:-4.77295,0.0,-126.641:4:7:55:.:.:1:.:.:.:0.00107257	0/1:160.002:179:152:4758:8:107:-74.648,0.0,-409.85:8:5:171:.:.:1:.:.:.:-0.0261709
chr7	18767343	.	A	G	3330.66	PASS	SOMATIC;NS=2;DP=478;DPB=478.0;AC=1;AN=3;AF=0.25;RO=350;AO=128;PRO=0.0;PAO=0.0;QR=12984;QA=4845;PQR=0.0;PQA=0.0;SRF=153;SRR=197;SAF=53;SAR=75;SRP=15.0216;SAP=11.2212;AB=0.360563;ABP=62.9613;RUN=1;RPP=3.07816;RPPR=3.23365;RPL=65.0;RPR=63.0;EPP=7.35324;EPPR=15.0216;DPRA=2.88618;ODDS=77.4416;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997143;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.352;Dels=0.0;FS=2.975;HaplotypeScore=9.8563;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.255;QD=12.31;ReadPosRankSum=1.101;SOR=0.873	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.46:120:123:4397:0:0:0.0,-33.2065,-395.614:0:0:120:118,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:119.23:354:227:8587:128:4845:-339.656,0.0,-676.247:128:36:354:219,123:38.0:0.36:2:4387,0,8498:.:1:1:.:.:1:-0.0261709
chr7	18993870	.	C	T	7420.365	REJECT	NS=2;DP=314;DPB=354.0;AC=3;AN=4;AF=0.75;RO=91;AO=263;PRO=0.0;PAO=0.0;QR=3386;QA=9938;PQR=0.0;PQA=0.0;SRF=26;SRR=65;SAF=81;SAR=182;SRP=39.3049;SAP=87.2354;AB=0.667883;ABP=70.0882;RUN=1;RPP=24.4856;RPPR=7.04303;RPL=157.0;RPR=106.0;EPP=15.5685;EPPR=3.03416;DPRA=0.0;ODDS=50.9177;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992395;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.821;Dels=0.0;FS=0.0;HaplotypeScore=3.9326;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.578;QD=26.145;ReadPosRankSum=-0.798;SOR=1.051	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.869:80:0:0:80:3038:-273.543,-21.6873,0.0:80:100:80:0,81:3336,243,0:1:.:1:.:.:.:0.00107257	0/1:119.869:274:91:3386:183:6900:-546.47,0.0,-230.423:183:67:274:91,183:6847,0,2945:.:1:1:.:.:.:-0.0261709
chr7	22501599	.	G	A	7830.225	REJECT	NS=2;DP=361;DPB=406.0;AC=3;AN=4;AF=0.75;RO=125;AO=281;PRO=0.0;PAO=0.0;QR=4781;QA=10594;PQR=0.0;PQA=0.0;SRF=58;SRR=67;SAF=148;SAR=133;SRP=4.41741;SAP=4.74902;AB=0.60443;ABP=32.9436;RUN=1;RPP=3.07985;RPPR=3.02767;RPL=139.0;RPR=142.0;EPP=3.38896;EPPR=8.03074;DPRA=0.0;ODDS=57.0619;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992883;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.957;Dels=0.0;FS=1.254;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.154;QD=28.43;ReadPosRankSum=-0.161;SOR=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:90:3382:-304.421,-24.3557,0.0:88:100:88:0,86:3382,257,0:1:.:1:.:.:.:0.00107257	0/1:129.501:316:125:4781:191:7212:-563.108,0.0,-344.503:191:60:316:125,191:7074,0,4413:.:1:1:.:.:.:-0.0261709
chr7	27880888	.	A	C	11278.6	REJECT	NS=2;DP=426;DPB=488.0;AC=2;AN=4;AF=0.5;RO=118;AO=370;PRO=0.0;PAO=0.0;QR=4339;QA=14082;PQR=0.0;PQA=0.0;SRF=64;SRR=54;SAF=176;SAR=194;SRP=4.85053;SAP=4.91181;AB=0.758197;ABP=285.586;RUN=1;RPP=3.03378;RPPR=4.18805;RPL=186.0;RPR=184.0;EPP=3.22158;EPPR=4.18805;DPRA=0.0;ODDS=173.742;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991892;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5695;Dels=0.0;FS=5.4185;HaplotypeScore=3.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7185;QD=24.33;ReadPosRankSum=-0.101;SOR=0.679;ClippingRankSum=0.678	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.644:122:67:2392:57:2158:-160.64,0.0,-181.7:56:46:122:65,56:1871,0,2159:1:.:1:.:.:.:0.00107257	0/1:117.644:364:51:1947:313:11924:-973.877,0.0,-76.5778:313:86:364:51,313:12197,0,1116:.:1:1:.:.:.:-0.0261709
chr7	27881889	.	C	T	5982.29	REJECT	NS=2;DP=381;DPB=431.0;AC=2;AN=4;AF=0.5;RO=221;AO=209;PRO=0.0;PAO=0.0;QR=8442;QA=8024;PQR=0.0;PQA=0.0;SRF=127;SRR=94;SAF=110;SAR=99;SRP=13.7105;SAP=4.26747;AB=0.484919;ABP=3.86176;RUN=1;RPP=7.59221;RPPR=4.67084;RPL=94.0;RPR=115.0;EPP=7.59221;EPPR=4.67084;DPRA=0.0;ODDS=282.282;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977376;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0435;Dels=0.0;FS=4.0835;HaplotypeScore=2.9044;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0225;QD=16.71;ReadPosRankSum=0.6725;SOR=0.6865;ClippingRankSum=-0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:53:2010:44:1657:-122.873,0.0,-154.655:42:44:95:53,41:1432,0,1886:1:.:1:.:.:.:0.00107257	0/1:129.501:332:168:6432:165:6367:-482.472,0.0,-488.324:165:50:332:166,165:6147,0,6115:.:1:1:.:.:.:-0.0261709
chr7	27882220	.	G	T	4244.1	PASS	SOMATIC;NS=2;DP=569;DPB=569.0;AC=1;AN=3;AF=0.25;RO=407;AO=162;PRO=0.0;PAO=0.0;QR=15419;QA=6061;PQR=0.0;PQA=0.0;SRF=205;SRR=202;SAF=80;SAR=82;SRP=3.05832;SAP=3.06392;AB=0.381176;ABP=55.1307;RUN=1;RPP=4.9405;RPPR=4.21075;RPL=75.0;RPR=87.0;EPP=3.86817;EPPR=5.83268;DPRA=2.95139;ODDS=90.8002;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987654;PAIREDR=0.992629;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-2.243;Dels=0.0;FS=0.533;HaplotypeScore=12.7104;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.354;QD=13.0;ReadPosRankSum=-1.16;SOR=0.702	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:139:144:5513:0:0:0.0,-39.008,-496.069:0:0:139:135,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:129.501:423:263:9906:162:6061:-430.179,0.0,-775.841:161:38:423:255,150:37.0:0.359:2:5527,0,9703:.:1:1:.:.:1:-0.0261709
chr7	27882260	.	T	C	12462.2	REJECT	NS=2;DP=465;DPB=534.0;AC=2;AN=4;AF=0.5;RO=128;AO=406;PRO=0.0;PAO=0.0;QR=4969;QA=15543;PQR=0.0;PQA=0.0;SRF=57;SRR=71;SAF=190;SAR=216;SRP=6.33537;SAP=6.62586;AB=0.7603;ABP=317.28;RUN=1;RPP=3.20284;RPPR=7.35324;RPL=200.0;RPR=206.0;EPP=5.59895;EPPR=3.07816;DPRA=0.0;ODDS=201.834;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992611;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2585;Dels=0.0;FS=1.6365;HaplotypeScore=6.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.258;QD=24.82;ReadPosRankSum=-0.6045;SOR=0.612;ClippingRankSum=-0.629	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:134:72:2790:64:2453:-183.877,0.0,-214.201:63:47:134:70,63:2181,0,2498:1:.:1:.:.:.:0.00107257	0/1:129.501:397:56:2179:342:13090:-1069.49,0.0,-88.2176:341:86:397:56,341:13402,0,1266:.:1:1:.:.:.:-0.0261709
chr7	27882511	.	G	T	5874.63	REJECT	NS=2;DP=385;DPB=454.0;AC=2;AN=4;AF=0.5;RO=226;AO=228;PRO=0.0;PAO=0.0;QR=8548;QA=8632;PQR=0.0;PQA=0.0;SRF=118;SRR=108;SAF=110;SAR=118;SRP=3.97113;SAP=3.61984;AB=0.502203;ABP=3.02943;RUN=1;RPP=3.16268;RPPR=3.0103;RPL=112.0;RPR=116.0;EPP=3.61984;EPPR=10.5432;DPRA=0.0;ODDS=366.599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=0.995575;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0215;Dels=0.0;FS=1.8885;HaplotypeScore=9.6724;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6735;QD=18.48;ReadPosRankSum=0.9555;SOR=0.6785;ClippingRankSum=-2.268	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:138:59:2198:80:3049:-236.717,0.0,-160.15:79:57:138:59,79:2824,0,1961:1:.:1:.:.:.:0.00107257	0/1:129.501:315:167:6350:148:5583:-416.902,0.0,-485.865:148:47:315:167,148:5304,0,6126:.:1:1:.:.:.:-0.0261709
chr7	27882550	.	A	G	3093.98	PASS	SOMATIC;NS=2;DP=430;DPB=430.0;AC=1;AN=3;AF=0.25;RO=309;AO=121;PRO=0.0;PAO=0.0;QR=11863;QA=4439;PQR=0.0;PQA=0.0;SRF=151;SRR=158;SAF=63;SAR=58;SRP=3.35464;SAP=3.45895;AB=0.391586;ABP=34.5564;RUN=1;RPP=9.48883;RPPR=3.86062;RPL=70.0;RPR=51.0;EPP=5.18177;EPPR=3.07355;DPRA=2.55372;ODDS=75.5958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991736;PAIREDR=0.996764;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-2.551;Dels=0.0;FS=3.148;HaplotypeScore=4.7738;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.725;QD=12.69;ReadPosRankSum=0.138;SOR=0.686	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:119:121:4622:0:0:0.0,-32.4049,-415.578:0:0:119:118,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:129.501:309:188:7241:121:4439:-315.599,0.0,-567.674:121:39:309:181,116:36.0:0.392:2:3948,0,7214:.:1:1:.:.:1:-0.0261709
chr7	27882908	.	C	G	4420.93	PASS	SOMATIC;NS=2;DP=558;DPB=558.0;AC=1;AN=3;AF=0.25;RO=394;AO=164;PRO=0.0;PAO=0.0;QR=15180;QA=6266;PQR=0.0;PQA=0.0;SRF=198;SRR=196;SAF=82;SAR=82;SRP=3.03235;SAP=3.0103;AB=0.383178;ABP=53.7456;RUN=1;RPP=3.22215;RPPR=4.09052;RPL=80.0;RPR=84.0;EPP=3.22215;EPPR=4.09052;DPRA=3.29231;ODDS=82.101;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993902;PAIREDR=0.997462;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.991;Dels=0.0;FS=0.0;HaplotypeScore=6.7695;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.081;QD=13.38;ReadPosRankSum=-0.528;SOR=0.678	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:126:130:5022:0:0:0.0,-35.2301,-451.93:0:0:126:122,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:129.501:428:264:10158:164:6266:-447.629,0.0,-797.681:164:38:428:254,159:38.0:0.386:2:5753,0,10100:.:1:1:.:.:1:-0.0261709
chr7	27883018	.	A	G	3159.27	PASS	SOMATIC;NS=2;DP=466;DPB=466.0;AC=1;AN=3;AF=0.25;RO=344;AO=122;PRO=0.0;PAO=0.0;QR=13010;QA=4607;PQR=0.0;PQA=0.0;SRF=177;SRR=167;SAF=59;SAR=63;SRP=3.64154;SAP=3.29508;AB=0.355685;ABP=65.0587;RUN=1;RPP=3.0815;RPPR=7.2775;RPL=60.0;RPR=62.0;EPP=5.57335;EPPR=3.0103;DPRA=2.78862;ODDS=77.7176;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991803;PAIREDR=0.994186;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.381;Dels=0.0;FS=0.853;HaplotypeScore=5.8964;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.551;QD=11.93;ReadPosRankSum=-1.084;SOR=0.76	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.359:120:123:4694:0:0:0.0,-33.3264,-422.442:0:0:120:118,0:.:0.0:0:.:.:.:0:.:.:0:0.00107257	0/1:120.1795:342:221:8316:122:4607:-321.518,0.0,-655.12:122:36:342:215,118:37.0:0.352:2:4108,0,8208:.:1:1:.:.:1:-0.0261709
chr7	27885315	.	CA	C	30.7891	REJECT	NS=2;DP=26;DPB=110.259;AC=2;AN=4;AF=0.5;RO=4;AO=2;PRO=98.5;PAO=96.5;QR=144;QA=62;PQR=3498.0;PQA=3409.0;SRF=4;SRR=0;SAF=2;SAR=0;SRP=11.6962;SAP=7.35324;AB=0.133333;ABP=20.5268;RUN=1;RPP=7.35324;RPPR=11.6962;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=11.6962;DPRA=0.0;ODDS=0.573411;GTI=1;TYPE=del;CIGAR=1M1D56M;NUMALT=1;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:1.93922:11:2:74:0:0:-0.17694,0.0,-8.66409:0:0:2:.:.:1:.:.:.:-0.712396	0/1:30.7891:15:2:70:2:62:-6.56567,0.0,-13.4974:2:50:4:.:.:1:.:.:.:-0.0261709
chr7	27885931	.	T	C	1263.52	PASS	SOMATIC;NS=2;DP=212;DPB=212.0;AC=1;AN=3;AF=0.25;RO=160;AO=51;PRO=0.0;PAO=0.0;QR=5980;QA=1919;PQR=0.0;PQA=0.0;SRF=74;SRR=86;SAF=21;SAR=30;SRP=4.96463;SAP=6.45911;AB=0.335526;ABP=38.7253;RUN=1;RPP=3.3935;RPPR=12.1848;RPL=27.0;RPR=24.0;EPP=6.45911;EPPR=31.728;DPRA=2.53333;ODDS=38.3548;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.5882;MQMR=60.5625;PAIRED=1.0;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.018;Dels=0.0;FS=0.655;HaplotypeScore=7.8447;MLEAC=1;MLEAF=0.5;MQ=60.64;MQRankSum=0.836;QD=11.01;ReadPosRankSum=0.565;SOR=0.85	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.257:60:60:2219:0:0:0.0,-16.2313,-199.853:0:0:60:60,0:.:0.0:0:.:.:.:0:.:.:0:-0.712396	0/1:125.2505:152:100:3761:51:1919:-131.807,0.0,-297.524:51:34:151:100,51:37.0:0.338:2:1702,0,3716:.:1:1:.:.:1:-0.0261709
chr7	27886011	.	C	CATATACGTATACGTGTAT	3724.39	REJECT	NS=2;DP=178;DPB=1022.67;AC=2;AN=4;AF=0.5;RO=49;AO=135;PRO=5.5;PAO=12.5;QR=1859;QA=4669;PQR=129.0;PQA=369.0;SRF=40;SRR=9;SAF=108;SAR=27;SRP=45.5977;SAP=108.544;AB=0.725806;ABP=85.3862;RUN=1;RPP=11.5193;RPPR=4.11819;RPL=79.0;RPR=56.0;EPP=3.15506;EPPR=5.18177;DPRA=0.0;ODDS=107.149;GTI=0;TYPE=ins;CIGAR=1M18I2M;NUMALT=1;MEANALT=2.0;LEN=18;MQM=65.4074;MQMR=59.5918;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=27886011;HOMLEN=17;HOMSEQ=ATATACGTATAC;SVLEN=18;SVTYPE=INS;BaseQRankSum=1.2275;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=63.485;MQRankSum=3.464;QD=22.125;ReadPosRankSum=-2.6835;SOR=0.654;ClippingRankSum=-0.343	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.994:46:22:862:19:675:-52.3693,0.0,-66.3149:30:58:52:24,36:1384,0,3209:1:.:1:1:.:.:-0.712396	0/1:119.994:158:27:997:116:3994:-337.93,0.0,-49.4379:129:84:153:34,179:21190,0,3236:.:1:1:1:.:.:-0.0261709
chr7	27886171	.	A	G	14789.7	REJECT	NS=2;DP=395;DPB=447.0;AC=4;AN=4;AF=1.0;RO=0;AO=447;PRO=0.0;PAO=0.0;QR=0;QA=16916;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=211;SAR=236;SRP=0.0;SAP=6.04648;AB=0.0;ABP=0.0;RUN=1;RPP=4.41423;RPPR=0.0;RPL=232.0;RPR=215.0;EPP=5.58012;EPPR=0.0;DPRA=0.0;ODDS=68.5771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995526;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9108;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.13;SOR=0.7805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:103:3896:-350.689,-27.9076,0.0:103:100:103:0,103:4271,309,0:1:.:1:.:.:.:-0.712396	1/1:129.501:343:0:0:344:13020:-1171.04,-93.1141,0.0:343:100:343:0,343:14440,1005,0:.:1:1:.:.:.:-0.0261709
chr7	27886417	.	GTTAT	G	1712.26	PASS	SOMATIC;NS=2;DP=218;DPB=200.375;AC=1;AN=4;AF=0.25;RO=147;AO=68;PRO=25.5;PAO=8.5;QR=5611;QA=2510;PQR=886.5;PQA=293.5;SRF=57;SRR=90;SAF=26;SAR=42;SRP=19.0969;SAP=11.1853;AB=0.402367;ABP=17.0028;RUN=1;RPP=4.1599;RPPR=13.779;RPL=37.0;RPR=31.0;EPP=3.13803;EPPR=8.34296;DPRA=3.44898;ODDS=33.4707;GTI=0;TYPE=del;CIGAR=1M4D3M;NUMALT=1;MEANALT=2.0;LEN=4;MQM=61.0294;MQMR=59.8776;PAIRED=1.0;PAIREDR=0.979592;technology.ILLUMINA=1.0;MQ0=0;END=27886421;HOMLEN=2;HOMSEQ=TT;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=3.681;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=0.409;QD=16.5;ReadPosRankSum=-0.436;SOR=0.653	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:135.102:50:47:1773:0:0:0.0,-14.1102,-176.424:0:0:49:52,0:0.288462,0.0:59.6538,0.0:37.2363,0.0:0.00976562,0.0:0,0:0,0:19,33,0,0:.:.:.:0:.:0:.:-0.712396	0/1:129.501:184:100:3838:68:2510:-177.088,0.0,-333.285:68:39:179:107,68:0.0689655,0.0294118:60.0,61.0294:38.383,38.9282:0.0,0.0:47,26:53,26:43,73,26,42:4108,0,6745:.:1:1:1:1:.:-0.0261709
chr7	27886586	.	G	GT	1579.915	REJECT	NS=2;DP=37;DPB=59.4167;AC=3;AN=4;AF=0.75;RO=4;AO=33;PRO=12.5;PAO=30.5;QR=148;QA=1245;PQR=449.0;PQA=1142.0;SRF=1;SRR=3;SAF=9;SAR=24;SRP=5.18177;SAP=17.8158;AB=0.7;ABP=6.48466;RUN=1;RPP=3.60252;RPPR=5.18177;RPL=15.0;RPR=18.0;EPP=6.23461;EPPR=3.0103;DPRA=0.0;ODDS=14.2891;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7665;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.3575;QD=19.495;RPA=5,6;RU=T;ReadPosRankSum=-0.5975;SOR=0.8455;STR;ClippingRankSum=-1.6	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:95.5483:12:3:109:7:268:-27.4997,0.0,-12.8398:8:67:12:5,9:245,0,118:1:.:1:.:.:.:-2.67715	1/1:65.02845:42:1:39:26:977:-146.652,-5.90466,0.0:35:96:37:2,45:1520,68,0:.:1:1:.:.:.:-0.0261709
chr7	27886761	.	GC	G	933.845	REJECT	NS=2;DP=50;DPB=44.3333;AC=2;AN=3;AF=0.5;RO=11;AO=38;PRO=0.0;PAO=1.0;QR=421;QA=1201;PQR=0.0;PQA=31.0;SRF=10;SRR=1;SAF=34;SAR=4;SRP=19.0002;SAP=54.4399;AB=0.690909;ABP=20.4216;RUN=1;RPP=5.06748;RPPR=3.20771;RPL=16.0;RPR=22.0;EPP=14.2105;EPPR=3.20771;DPRA=0.0;ODDS=1.14568;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=2;MEANALT=2.0;LEN=1;MQM=55.7368;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.6635;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=-1.041;QD=19.39;ReadPosRankSum=-0.289;SOR=0.3665;ClippingRankSum=0.322	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.99455:9:6:231:4:133:-9.30181,0.0,-18.2651:3:39:9:5,3:111,0,328:1:.:1:.:.:.:-2.67715	./1:47.587085:45:5:190:34:1068:-96.2509,-0.815098,-6.34789:37:83:45:5,41:1675,0,89:.:1:1:.:.:.:-0.0261709
chr7	27886761	.	GCTTTT	G	.	PASS	SOMATIC;AC=1;AN=4;END=27886766;HOMLEN=0;SVLEN=-5;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-2.67715	0/1:13,25:25:66:38:.:.:.:1:.:.:-0.0261709
chr7	27886762	.	C	T	933.845	REJECT	NS=2;DP=55;DPB=44.3333;AC=2;AN=2;AF=0.25;RO=11;AO=5;PRO=0.0;PAO=1.0;QR=421;QA=187;PQR=0.0;PQA=31.0;SRF=10;SRR=1;SAF=3;SAR=2;SRP=19.0002;SAP=3.44459;AB=0.113636;ABP=60.0608;RUN=1;RPP=13.8677;RPPR=3.20771;RPL=5.0;RPR=0.0;EPP=3.44459;EPPR=3.20771;DPRA=0.0;ODDS=1.14568;GTI=0;TYPE=snp;CIGAR=1M1X1M;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:76.9891:11:6:231:0:0:-9.30181,-10.9451,-30.3048:0:0:10:.:.:1:.:.:.:-2.67715	./1:6.17417:44:5:190:5:187:-96.2509,-72.0099,-85.3382:5:11:44:.:.:1:.:.:.:-0.0261709
chr7	27886770	.	CTTTT	C	411.739	REJECT	NS=2;DP=40;DPB=49.4615;AC=2;AN=3;AF=0.5;RO=4;AO=16;PRO=16.0;PAO=14.0;QR=134;QA=566;PQR=544.167;PQA=475.167;SRF=4;SRR=0;SAF=14;SAR=2;SRP=11.6962;SAP=22.5536;AB=0.4;ABP=6.48466;RUN=1;RPP=5.18177;RPPR=5.18177;RPL=6.0;RPR=10.0;EPP=11.6962;EPPR=5.18177;DPRA=0.0;ODDS=2.94883;GTI=0;TYPE=del;CIGAR=1M4D21M;NUMALT=2;MEANALT=9.0;LEN=4;MQM=55.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.0245;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=55.925;MQRankSum=-0.5995;QD=13.515;RPA=18,14;RU=T;ReadPosRankSum=0.328;SOR=0.6725;STR;ClippingRankSum=-0.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:57.86455:8:2:64:1:39:-2.2187,0.0,-8.25773:2:35:5:5,3:111,0,300:1:.:1:.:.:.:-2.67715	./1:56.0608:38:2:70:15:527:-47.5469,-2.39618,-9.49969:21:73:28:7,27:1106,0,178:.:1:1:.:.:.:-0.0261709
chr7	27886770	.	CTTTTT	C	411.739	REJECT	NS=2;DP=40;DPB=49.4615;AC=2;AN=2;AF=0.25;RO=4;AO=5;PRO=16.0;PAO=12.0;QR=134;QA=181;PQR=544.167;PQA=399.667;SRF=4;SRR=0;SAF=5;SAR=0;SRP=11.6962;SAP=13.8677;AB=0.16129;ABP=33.9012;RUN=1;RPP=3.44459;RPPR=5.18177;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=5.18177;DPRA=0.0;ODDS=2.94883;GTI=0;TYPE=del;CIGAR=1M5D20M;NUMALT=2;MEANALT=11.0;LEN=5;MQM=57.6;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7291:9:2:64:0:0:-2.2187,-3.03844,-11.5695:0:0:3:.:.:1:.:.:.:-2.67715	./1:13.1216:31:2:70:5:181:-47.5469,-34.7918,-56.9524:5:23:22:.:.:1:.:.:.:-0.0261709
chr7	27887164	.	C	T	8870.28	REJECT	NS=2;DP=336;DPB=386.0;AC=2;AN=4;AF=0.5;RO=90;AO=296;PRO=0.0;PAO=0.0;QR=3426;QA=11129;PQR=0.0;PQA=0.0;SRF=35;SRR=55;SAF=132;SAR=164;SRP=12.6613;SAP=10.5224;AB=0.766839;ABP=241.737;RUN=1;RPP=27.6888;RPPR=5.42305;RPL=177.0;RPR=119.0;EPP=3.74391;EPPR=12.6613;DPRA=0.0;ODDS=135.19;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9778;PAIRED=0.993243;PAIREDR=0.966667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.2915;Dels=0.0;FS=6.1895;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.5995;QD=24.69;ReadPosRankSum=-0.6585;SOR=0.5035;ClippingRankSum=-0.385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:50:1880:49:1823:-137.287,0.0,-142.4:48:49:97:48,48:1640,0,1657:1:.:1:.:.:.:-0.182923	0/1:129.501:286:40:1546:247:9306:-759.343,0.0,-61.3914:246:86:286:40,246:9447,0,886:.:1:1:.:.:.:-0.0261709
chr7	27887303	.	C	T	3802.62	REJECT	NS=2;DP=146;DPB=172.0;AC=2;AN=4;AF=0.5;RO=40;AO=132;PRO=0.0;PAO=0.0;QR=1491;QA=5051;PQR=0.0;PQA=0.0;SRF=6;SRR=34;SAF=17;SAR=115;SRP=45.5712;SAP=161.001;AB=0.767442;ABP=109.867;RUN=1;RPP=12.4858;RPPR=3.87889;RPL=78.0;RPR=54.0;EPP=37.8197;EPPR=3.87889;DPRA=0.0;ODDS=12.3857;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.544;Dels=0.0;FS=4.018;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0575;QD=24.88;ReadPosRankSum=0.8225;SOR=0.9505;ClippingRankSum=-0.674	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:50:28:1032:22:822:-60.5328,0.0,-79.4308:22:44:50:28,22:774,0,990:1:.:1:.:.:.:-0.182923	0/1:76.39515:121:12:459:110:4229:-347.526,0.0,-8.24625:109:90:121:12,109:4326,0,155:.:1:1:.:.:.:-0.0261709
chr7	27887689	.	A	T	10781.9	REJECT	NS=2;DP=396;DPB=459.0;AC=2;AN=4;AF=0.5;RO=100;AO=358;PRO=0.0;PAO=0.0;QR=3845;QA=13459;PQR=0.0;PQA=0.0;SRF=56;SRR=44;SAF=205;SAR=153;SRP=6.13722;SAP=19.4116;AB=0.779956;ABP=315.48;RUN=1;RPP=3.61686;RPPR=3.09716;RPL=174.0;RPR=184.0;EPP=6.50407;EPPR=5.18177;DPRA=0.0;ODDS=140.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994413;PAIREDR=0.99;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.3155;Dels=0.0;FS=1.357;HaplotypeScore=7.7478;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.217;QD=25.84;ReadPosRankSum=0.499;SOR=0.7055;ClippingRankSum=-0.994	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:56:2150:68:2494:-190.858,0.0,-159.921:68:55:123:55,68:2254,0,1873:1:.:1:.:.:.:-0.182923	0/1:129.501:334:44:1695:290:10965:-895.806,0.0,-62.0328:289:87:333:44,289:11244,0,918:.:1:1:.:.:.:-0.0261709
chr7	27887806	.	C	G	9710.6	REJECT	NS=2;DP=376;DPB=431.0;AC=2;AN=4;AF=0.5;RO=112;AO=318;PRO=0.0;PAO=0.0;QR=4362;QA=12221;PQR=0.0;PQA=0.0;SRF=46;SRR=66;SAF=127;SAR=191;SRP=10.7656;SAP=30.98;AB=0.737819;ABP=214.741;RUN=1;RPP=25.9815;RPPR=7.97367;RPL=188.0;RPR=130.0;EPP=5.74171;EPPR=4.25114;DPRA=0.0;ODDS=244.115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993711;PAIREDR=0.982143;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8255;Dels=0.0;FS=0.5875;HaplotypeScore=5.832;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5305;QD=24.365;ReadPosRankSum=0.257;SOR=0.745;ClippingRankSum=0.381	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7595:106:57:2211:52:1966:-147.394,0.0,-169.48:50:47:106:56,48:1759,0,1944:1:.:1:.:.:.:-0.182923	0/1:117.7595:322:55:2151:266:10255:-835.399,0.0,-106.538:266:83:321:55,266:10510,0,1459:.:1:1:.:.:.:-0.0261709
chr7	27887967	.	G	A	8733.52	REJECT	NS=2;DP=323;DPB=370.0;AC=2;AN=4;AF=0.5;RO=77;AO=293;PRO=0.0;PAO=0.0;QR=2875;QA=10898;PQR=0.0;PQA=0.0;SRF=38;SRR=39;SAF=157;SAR=136;SRP=3.0385;SAP=6.27863;AB=0.791892;ABP=276.827;RUN=1;RPP=4.67781;RPPR=3.71532;RPL=154.0;RPR=139.0;EPP=4.26279;EPPR=5.29458;DPRA=0.0;ODDS=152.823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8831;PAIRED=1.0;PAIREDR=0.974026;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.65;Dels=0.0;FS=1.4705;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=0.734;QD=26.565;ReadPosRankSum=0.729;SOR=0.892;ClippingRankSum=0.533	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.246:94:36:1299:58:2151:-168.205,0.0,-91.4856:58:62:94:36,59:2054,0,1105:1:.:1:.:.:.:-0.182923	0/1:119.246:276:41:1576:235:8747:-712.061,0.0,-67.1123:235:85:276:41,235:8808,0,980:.:1:1:.:.:.:-0.0261709
chr7	27888014	.	C	T	10787.2	REJECT	NS=2;DP=383;DPB=445.0;AC=2;AN=4;AF=0.5;RO=95;AO=350;PRO=0.0;PAO=0.0;QR=3570;QA=13470;PQR=0.0;PQA=0.0;SRF=52;SRR=43;SAF=205;SAR=145;SRP=4.86177;SAP=25.3454;AB=0.786517;ABP=320.314;RUN=1;RPP=35.1729;RPPR=8.15326;RPL=139.0;RPR=211.0;EPP=8.59409;EPPR=9.61615;DPRA=0.0;ODDS=139.518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.568;Dels=0.0;FS=1.4815;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6505;QD=27.44;ReadPosRankSum=0.206;SOR=0.8915;ClippingRankSum=0.413	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5385:122:51:1913:72:2751:-214.264,0.0,-138.835:71:59:122:50,71:2523,0,1714:1:.:1:.:.:.:-0.182923	0/1:118.5385:322:44:1657:278:10719:-876.896,0.0,-61.8184:278:86:322:44,278:11061,0,883:.:1:1:.:.:.:-0.0261709
chr7	27888968	.	G	A	14126.65	REJECT	NS=2;DP=380;DPB=436.0;AC=4;AN=4;AF=1.0;RO=0;AO=434;PRO=0.0;PAO=0.0;QR=0;QA=16392;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=182;SAR=252;SRP=0.0;SAP=27.5269;AB=0.0;ABP=0.0;RUN=1;RPP=3.09035;RPPR=0.0;RPL=219.0;RPR=215.0;EPP=3.73079;EPPR=0.0;DPRA=0.0;ODDS=73.5675;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993088;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8992;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.895;SOR=1.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.4085:109:0:0:111:4197:-377.76,-30.0749,0.0:109:100:109:0,107:4340,321,0:1:.:1:.:.:.:-0.182923	1/1:123.4085:324:0:0:323:12195:-1096.87,-87.4403,0.0:322:100:322:0,322:13603,951,0:.:1:1:.:.:.:-0.0261709
chr7	27889187	.	G	A	5734.49	REJECT	NS=2;DP=359;DPB=413.0;AC=2;AN=4;AF=0.5;RO=207;AO=206;PRO=0.0;PAO=0.0;QR=7754;QA=7808;PQR=0.0;PQA=0.0;SRF=92;SRR=115;SAF=97;SAR=109;SRP=8.55962;SAP=4.52822;AB=0.498789;ABP=3.01556;RUN=1;RPP=3.05246;RPPR=3.86001;RPL=102.0;RPR=104.0;EPP=4.52822;EPPR=14.4341;DPRA=0.0;ODDS=308.566;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.970874;PAIREDR=0.990338;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1965;Dels=0.0;FS=0.208;HaplotypeScore=6.8264;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0505;QD=16.71;ReadPosRankSum=-0.158;SOR=0.6535;ClippingRankSum=-0.128	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.234:101:55:2003:48:1806:-134.689,0.0,-152.401:47:46:101:54,46:1562,0,1857:1:.:1:.:.:.:-0.182923	0/1:117.234:308:152:5751:158:6002:-456.306,0.0,-433.352:156:51:308:151,155:5651,0,5466:.:1:1:.:.:.:-0.0261709
chr7	27889371	.	G	GACACAGACACACACACACACACA	13260.7	PASS	SOMATIC;DP=214;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-2.731;FS=3.813;MLEAC=1;MLEAF=0.5;MQ=56.91;MQRankSum=-0.29;QD=8.08;ReadPosRankSum=0.238;SOR=0.432	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.182923	0/1:57,114:199:99.0:13298,0,6164:114:67:171:.:1:.:.:.:.:-0.0261709
chr7	27889371	.	G	GACACAGACACACACACACACACACAC	.	PASS	SOMATIC;AC=1;AN=4;END=27889371;HOMLEN=5;HOMSEQ=ACACA;SVLEN=26;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.182923	0/1:67,23:23:26:90:.:.:.:1:.:.:-0.0261709
chr7	27889375	.	C	CAG	493.73	PASS	DP=80;AC=1;AN=4;AF=0.5;BaseQRankSum=-1.053;FS=5.761;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-2.441;QD=6.17;ReadPosRankSum=-0.754;SOR=1.458;ClippingRankSum=0.052	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:46,18:64:99.0:531,0,2773:18:28:64:1:.:.:.:.:.:-0.182923	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0261709
chr7	27889377	.	C	G	406.808	REJECT	NS=2;DP=287;DPB=287.0;AC=1;AN=4;AF=0.25;RO=259;AO=28;PRO=0.0;PAO=0.0;QR=9650;QA=924;PQR=0.0;PQA=0.0;SRF=132;SRR=127;SAF=9;SAR=19;SRP=3.2199;SAP=10.7656;AB=0.321839;ABP=26.9963;RUN=1;RPP=63.8115;RPPR=28.3721;RPL=28.0;RPR=0.0;EPP=10.7656;EPPR=3.42112;DPRA=0.435;ODDS=93.6711;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.8571;MQMR=57.0734;PAIRED=0.964286;PAIREDR=0.992278;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:141.613:87:59:2221:28:924:-54.1639,0.0,-172.394:28:32:87:.:.:1:.:.:.:-0.182923	0/0:141.613:200:200:7429:0:0:0.0,-53.6246,-640.613:0:0:200:.:.:0:.:.:.:-0.0261709
chr7	27889391	.	C	T	1601.0	REJECT	NS=2;DP=297;DPB=297.0;AC=2;AN=4;AF=0.5;RO=203;AO=94;PRO=0.0;PAO=0.0;QR=7510;QA=3135;PQR=0.0;PQA=0.0;SRF=97;SRR=106;SAF=49;SAR=45;SRP=3.87675;SAP=3.37991;AB=0.316498;ABP=89.8765;RUN=1;RPP=207.129;RPPR=4.30463;RPL=0.0;RPR=94.0;EPP=3.37991;EPPR=3.87675;DPRA=0.0;ODDS=52.8439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.4787;MQMR=55.3941;PAIRED=1.0;PAIREDR=0.990148;technology.ILLUMINA=1.0;MQ0=6;BaseQRankSum=-3.976;Dels=0.0;FS=0.0;HaplotypeScore=16.4395;MLEAC=1;MLEAF=0.5;MQ=57.94;MQRankSum=2.456;QD=9.22;ReadPosRankSum=-2.534;SOR=0.719	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:83:65:2383:18:624:-28.9367,0.0,-181.728:18:22:83:.:.:.:.:1:.:.:.:-0.182923	0/1:129.501:217:138:5127:76:2511:-164.006,0.0,-381.803:76:35:217:144,76:2057,0,4860:.:1:1:.:.:.:-0.0261709
chr7	27890064	.	T	C	7673.26	REJECT	NS=2;DP=477;DPB=552.0;AC=2;AN=4;AF=0.5;RO=277;AO=275;PRO=0.0;PAO=0.0;QR=10632;QA=10528;PQR=0.0;PQA=0.0;SRF=128;SRR=149;SAF=141;SAR=134;SRP=6.46741;SAP=3.39722;AB=0.498188;ABP=3.02604;RUN=1;RPP=3.0182;RPPR=3.95885;RPL=137.0;RPR=138.0;EPP=3.20771;EPPR=3.95885;DPRA=0.0;ODDS=484.32;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992727;PAIREDR=0.99639;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1625;Dels=0.0;FS=2.6185;HaplotypeScore=6.8323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0455;QD=17.75;ReadPosRankSum=0.0355;SOR=0.6005;ClippingRankSum=0.537	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:148:76:2943:73:2792:-210.847,0.0,-224.438:72:49:148:75,72:2529,0,2783:1:.:1:.:.:.:-0.182923	0/1:129.501:402:201:7689:202:7736:-586.642,0.0,-582.392:202:50:402:200,202:7463,0,7348:.:1:1:.:.:.:-0.0261709
chr7	27890366	.	G	A	6156.91	REJECT	NS=2;DP=424;DPB=490.0;AC=2;AN=4;AF=0.5;RO=254;AO=236;PRO=0.0;PAO=0.0;QR=9502;QA=8697;PQR=0.0;PQA=0.0;SRF=139;SRR=115;SAF=114;SAR=122;SRP=7.93458;SAP=3.59917;AB=0.481633;ABP=4.44613;RUN=1;RPP=3.15752;RPPR=5.78021;RPL=116.0;RPR=120.0;EPP=8.31016;EPPR=7.93458;DPRA=0.0;ODDS=421.588;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9685;PAIRED=0.987288;PAIREDR=0.992126;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3365;Dels=0.0;FS=10.5985;HaplotypeScore=13.5724;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.981;QD=16.855;ReadPosRankSum=0.5825;SOR=0.6815;ClippingRankSum=0.834	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:66:2471:64:2418:-182.397,0.0,-187.156:63:49:128:63,63:2262,0,2163:1:.:1:.:.:.:-0.182923	0/1:129.501:359:188:7031:172:6279:-467.366,0.0,-534.966:171:48:359:188,171:5912,0,6761:.:1:1:.:.:.:-0.0261709
chr7	27890432	.	A	T	1187.2	REJECT	NS=2;DP=260;DPB=344.792;AC=2;AN=2;AF=0.0;RO=65;AO=20;PRO=56.7;PAO=16.3667;QR=2369;QA=281;PQR=2024.28;PQA=551.45;SRF=30;SRR=35;SAF=0;SAR=20;SRP=3.84548;SAP=46.4397;AB=0.0769231;ABP=407.238;RUN=1;RPP=6.91895;RPPR=3.04371;RPL=7.0;RPR=13.0;EPP=6.91895;EPPR=3.04371;DPRA=0.0;ODDS=17.8994;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=4;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984615;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:77.7244:68:22:779:5:58:-15.6361,-43.7559,-401.049:5:10:51:.:.:1:.:.:.:-0.182923	./1:131.202:192:43:1590:15:223:-110.535,-182.026,-1150.77:15:10:145:.:.:1:.:.:.:-0.0261709
chr7	27890432	.	A	AT	1187.2	REJECT	NS=2;DP=260;DPB=344.792;AC=2;AN=2;AF=0.0;RO=65;AO=33;PRO=56.7;PAO=50.7;QR=2369;QA=878;PQR=2024.28;PQA=1771.28;SRF=30;SRR=35;SAF=14;SAR=19;SRP=3.84548;SAP=4.65535;AB=0.126923;ABP=317.339;RUN=1;RPP=3.0761;RPPR=3.04371;RPL=17.0;RPR=16.0;EPP=4.65535;EPPR=3.04371;DPRA=0.0;ODDS=17.8994;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=4;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.969697;PAIREDR=0.984615;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.549;FS=4.261;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.055;QD=1.31;RPA=16,17;RU=T;ReadPosRankSum=-1.353;SOR=1.056;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:77.7244:68:22:779:5:170:-15.6361,-8.01225,-74.0085:5:10:51:.:.:.:.:1:.:.:.:-0.182923	./1:115.101:238:43:1590:28:708:-110.535,-60.1243,-209.656:41:22:178:157,54:418,0,1802:.:1:1:.:.:.:-0.0261709
chr7	27890432	.	AT	A	1187.2	REJECT	NS=2;DP=260;DPB=344.792;AC=2;AN=4;AF=0.5;RO=65;AO=61;PRO=56.7;PAO=40.0333;QR=2369;QA=1856;PQR=2024.28;PQA=1421.78;SRF=30;SRR=35;SAF=25;SAR=36;SRP=3.84548;SAP=7.31765;AB=0.234615;ABP=162.062;RUN=1;RPP=18.709;RPPR=3.04371;RPL=41.0;RPR=20.0;EPP=4.7546;EPPR=3.04371;DPRA=0.0;ODDS=17.8994;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=4;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984615;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:77.7244:68:22:779:12:297:-15.6361,0.0,-83.472:12:24:51:.:.:1:.:.:.:-0.182923	0/1:131.202:192:43:1590:49:1559:-110.535,0.0,-240.138:49:34:145:.:.:1:.:.:.:-0.0261709
chr7	27890432	.	ATT	A	1187.2	REJECT	NS=2;DP=260;DPB=344.792;AC=2;AN=2;AF=0.0;RO=65;AO=17;PRO=56.7;PAO=33.2;QR=2369;QA=447;PQR=2024.28;PQA=1165.2;SRF=30;SRR=35;SAF=6;SAR=11;SRP=3.84548;SAP=6.20364;AB=0.0653846;ABP=429.588;RUN=1;RPP=4.1599;RPPR=3.04371;RPL=7.0;RPR=10.0;EPP=3.13803;EPPR=3.04371;DPRA=0.0;ODDS=17.8994;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=4;MEANALT=22.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984615;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:77.7244:68:22:779:7:208:-15.6361,-10.1902,-136.815:7:14:51:.:.:1:.:.:.:-0.182923	./1:131.202:192:43:1590:10:239:-110.535,-125.602,-500.045:10:7:145:.:.:1:.:.:.:-0.0261709
chr7	27890568	.	A	AT	37.0847	REJECT	NS=2;DP=152;DPB=192.467;AC=2;AN=2;AF=0.0;RO=126;AO=8;PRO=28.5833;PAO=21.5833;QR=4725;QA=239;PQR=1012.58;PQA=757.583;SRF=17;SRR=109;SAF=4;SAR=4;SRP=148.878;SAP=3.0103;AB=0.0465116;ABP=79.8198;RUN=1;RPP=12.7819;RPPR=14.6604;RPL=7.0;RPR=1.0;EPP=4.09604;EPPR=12.937;DPRA=0.0;ODDS=8.53888;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.0847:43:29:1071:2:54:-7.71657,-11.7993,-106.097:2:5:40:.:.:1:.:.:.:-0.182923	./1:130.644:109:97:3654:6:185:0.0,-12.6206,-328.401:6:6:107:.:.:1:.:.:.:-0.0261709
chr7	27890568	.	AT	A	37.0847	REJECT	NS=2;DP=152;DPB=192.467;AC=2;AN=3;AF=0.25;RO=126;AO=11;PRO=28.5833;PAO=20.25;QR=4725;QA=327;PQR=1012.58;PQA=709.583;SRF=17;SRR=109;SAF=5;SAR=6;SRP=148.878;SAP=3.20771;AB=0.162791;ABP=45.4803;RUN=1;RPP=7.94546;RPPR=14.6604;RPL=8.0;RPR=3.0;EPP=3.20771;EPPR=12.937;DPRA=0.0;ODDS=8.53888;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:37.0847:43:29:1071:7:200:-7.71657,0.0,-92.9582:7:18:40:.:.:1:.:.:.:-0.182923	./1:130.644:109:97:3654:4:127:0.0,-20.5488,-372.493:4:4:107:.:.:1:.:.:.:-0.0261709
chr7	27890579	.	G	T	37.0847	REJECT	NS=2;DP=152;DPB=192.467;AC=2;AN=2;AF=0.0;RO=126;AO=2;PRO=28.5833;PAO=14.5833;QR=4725;QA=30;PQR=1012.58;PQA=503.25;SRF=17;SRR=109;SAF=1;SAR=1;SRP=148.878;SAP=3.0103;AB=0.0465116;ABP=79.8198;RUN=1;RPP=7.35324;RPPR=14.6604;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=12.937;DPRA=0.394495;ODDS=8.53888;GTI=0;TYPE=snp;CIGAR=11M1X3M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.0847:43:29:1071:2:30:-7.71657,-21.2797,-193.949:2:5:40:.:.:1:.:.:.:-0.182923	./1:130.644:109:97:3654:0:0:0.0,-37.3997,-465.436:0:0:107:.:.:1:.:.:.:-0.0261709
chr7	27890678	.	A	C	2333.82	REJECT	NS=2;DP=91;DPB=105.0;AC=2;AN=4;AF=0.5;RO=25;AO=80;PRO=0.0;PAO=0.0;QR=937;QA=2994;PQR=0.0;PQA=0.0;SRF=5;SRR=20;SAF=32;SAR=48;SRP=22.5536;SAP=9.95901;AB=0.761905;ABP=65.5694;RUN=1;RPP=11.8048;RPPR=3.09716;RPL=49.0;RPR=31.0;EPP=8.33041;EPPR=10.0459;DPRA=0.0;ODDS=52.0946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.9;MQMR=59.76;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1365;Dels=0.0;FS=3.586;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=59.065;MQRankSum=-1.092;QD=26.48;ReadPosRankSum=0.0555;SOR=0.2635;ClippingRankSum=1.555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.0425:27:12:436:16:611:-47.3719,0.0,-31.7533:16:59:27:10,16:603,0,338:1:.:1:.:.:.:-0.182923	0/1:123.0425:77:13:501:64:2383:-193.559,0.0,-24.2587:64:83:77:13,64:2404,0,340:.:1:1:.:.:.:-0.0261709
chr7	27890750	.	C	T	1446.35	REJECT	NS=2;DP=89;DPB=103.0;AC=2;AN=4;AF=0.5;RO=47;AO=56;PRO=0.0;PAO=0.0;QR=1740;QA=2080;PQR=0.0;PQA=0.0;SRF=36;SRR=11;SAF=46;SAR=10;SRP=31.8863;SAP=53.2644;AB=0.543689;ABP=4.71796;RUN=1;RPP=18.5208;RPPR=6.75262;RPL=18.0;RPR=38.0;EPP=12.937;EPPR=13.4056;DPRA=0.0;ODDS=55.8872;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.875;MQMR=59.4681;PAIRED=1.0;PAIREDR=0.957447;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.363;Dels=0.0;FS=2.853;HaplotypeScore=6.9272;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=0.3835;QD=20.645;ReadPosRankSum=0.9;SOR=1.557;ClippingRankSum=-0.549	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:24:10:364:16:582:-45.4916,0.0,-25.6253:15:63:24:8,15:568,0,267:1:.:1:.:.:.:-0.182923	0/1:129.501:76:37:1376:40:1498:-114.002,0.0,-103.052:40:52:76:36,40:1457,0,1268:.:1:1:.:.:.:-0.0261709
chr7	27891062	.	G	A	1252.07	PASS	SOMATIC;NS=2;DP=189;DPB=189.0;AC=1;AN=3;AF=0.25;RO=138;AO=51;PRO=0.0;PAO=0.0;QR=5221;QA=1971;PQR=0.0;PQA=0.0;SRF=27;SRR=111;SAF=5;SAR=46;SRP=114.039;SAP=74.5837;AB=0.354167;ABP=29.6108;RUN=1;RPP=6.45911;RPPR=3.0103;RPL=21.0;RPR=30.0;EPP=3.3935;EPPR=17.1721;DPRA=3.2;ODDS=29.0917;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992754;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.366;Dels=0.0;FS=8.024;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.764;QD=12.22;ReadPosRankSum=0.027;SOR=1.597	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:125.969:45:45:1703:0:0:0.0,-12.2084,-153.497:0:0:45:45,0:.:0.0:0:.:.:.:0:.:.:0:-0.182923	0/1:129.501:144:93:3518:51:1971:-138.349,0.0,-277.557:51:35:144:92,51:38.0:0.354:2:1776,0,3437:.:1:1:.:.:1:-0.0261709
chr7	27891521	.	G	C	4496.77	PASS	SOMATIC;DP=361;AC=1;AN=3;AF=0.5;MQ0=1;VT=SNP;BaseQRankSum=3.001;Dels=0.0;FS=1.305;HaplotypeScore=10.7143;MLEAC=1;MLEAF=0.5;MQ=56.53;MQRankSum=-0.394;QD=12.46;ReadPosRankSum=-0.628;SOR=0.744	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:112,1:.:112:0.00885:0:1:1:113:.:.:.:.:.:.:.:0:-0.182923	0/1:215,126:38.0:341:0.362:2:126:37:341:99.0:4525,0,8014:.:1:.:.:.:1:-0.0261709
chr7	27891521	.	GTTAT	CTTAC	3597.15	PASS	SOMATIC;NS=2;DP=461;DPB=479.4;AC=1;AN=4;AF=0.25;RO=328;AO=129;PRO=30.0;PAO=10.0;QR=12159;QA=4841;PQR=856.0;PQA=381.0;SRF=163;SRR=165;SAF=64;SAR=65;SRP=3.03678;SAP=3.02713;AB=0.371758;ABP=52.5787;RUN=1;RPP=9.08706;RPPR=3.96363;RPL=55.0;RPR=74.0;EPP=5.04711;EPPR=3.03678;DPRA=3.04386;ODDS=25.6822;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=1.0;LEN=5;MQM=55.0465;MQMR=54.9421;PAIRED=0.992248;PAIREDR=0.987805;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:111.506:114:110:4090:0:0:0.0,-10.7277,-358.821:0:0:110:.:.:0:.:.:.:-0.182923	0/1:160.002:347:218:8069:129:4841:-365.862,0.0,-637.064:129:37:347:.:.:1:.:.:.:-0.0261709
chr7	27891525	.	T	C	4412.77	PASS	SOMATIC;DP=357;AC=1;AN=3;AF=0.5;MQ0=1;VT=SNP;BaseQRankSum=2.085;Dels=0.0;FS=0.0;HaplotypeScore=17.4881;MLEAC=1;MLEAF=0.5;MQ=56.22;MQRankSum=0.185;QD=12.36;ReadPosRankSum=0.079;SOR=0.672	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:115,0:.:112:0.0:0:0:0:115:.:.:.:.:.:.:.:0:-0.182923	0/1:215,125:38.0:340:0.361:2:125:36:340:99.0:4441,0,7896:.:1:.:.:.:1:-0.0261709
chr7	27891749	.	C	CT	796.655	REJECT	NS=2;DP=181;DPB=266.75;AC=2;AN=4;AF=0.5;RO=72;AO=35;PRO=70.5;PAO=59.5;QR=2648;QA=1006;PQR=2474.17;PQA=1996.17;SRF=18;SRR=54;SAF=14;SAR=21;SRP=42.0968;SAP=6.05036;AB=0.19337;ABP=150.826;RUN=1;RPP=20.9405;RPPR=12.7819;RPL=26.0;RPR=9.0;EPP=3.07234;EPPR=8.92153;DPRA=0.0;ODDS=1.14338;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=18.0;LEN=1;MQM=59.0;MQMR=58.625;PAIRED=1.0;PAIREDR=0.986111;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.285;FS=17.235;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-0.672;QD=2.66;RPA=15,16;RU=T;ReadPosRankSum=0.205;SOR=0.165;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.16717:47:20:723:6:151:-6.72428,0.0,-86.8963:6:19:31:.:.:.:.:1:.:.:.:-0.182923	0/1:129.501:182:52:1925:29:855:-79.8591,0.0,-190.379:45:34:129:101,62:658,0,1421:.:1:1:.:.:.:-0.0261709
chr7	27891749	.	CT	C	796.655	REJECT	NS=2;DP=181;DPB=266.75;AC=2;AN=2;AF=0.0;RO=72;AO=20;PRO=70.5;PAO=38.0;QR=2648;QA=550;PQR=2474.17;PQA=1337.67;SRF=18;SRR=54;SAF=5;SAR=15;SRP=42.0968;SAP=13.8677;AB=0.110497;ABP=241.524;RUN=1;RPP=9.95901;RPPR=12.7819;RPL=14.0;RPR=6.0;EPP=3.44459;EPPR=8.92153;DPRA=0.0;ODDS=1.14338;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=18.0;LEN=1;MQM=59.25;MQMR=58.625;PAIRED=1.0;PAIREDR=0.986111;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.16717:47:20:723:5:174:-6.72428,-0.379282,-117.416:5:16:31:.:.:1:.:.:.:-0.182923	./1:160.002:134:52:1925:15:376:-79.8591,-70.424,-360.678:15:16:96:.:.:1:.:.:.:-0.0261709
chr7	27891896	.	G	A	707.007	PASS	SOMATIC;NS=2;DP=140;DPB=140.0;AC=1;AN=3;AF=0.25;RO=109;AO=31;PRO=0.0;PAO=0.0;QR=4056;QA=1144;PQR=0.0;PQA=0.0;SRF=42;SRR=67;SAF=11;SAR=20;SRP=15.4614;SAP=8.68415;AB=0.326316;ABP=27.9022;RUN=1;RPP=3.08035;RPPR=17.5333;RPL=16.0;RPR=15.0;EPP=18.771;EPPR=47.0175;DPRA=2.11111;ODDS=29.1105;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.806;Dels=0.0;FS=0.0;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.401;QD=10.02;ReadPosRankSum=-0.361;SOR=0.693	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:126.118:45:45:1689:0:0:0.0,-12.2166,-152.254:0:0:45:45,0:.:0.0:0:.:.:.:0:.:.:0:-0.182923	0/1:122.5425:95:64:2367:31:1144:-77.2689,0.0,-187.36:31:33:95:64,30:36.0:0.312:2:980,0,2343:.:1:1:.:.:1:-0.0261709
chr7	27891913	.	G	A	783.827	PASS	SOMATIC;NS=2;DP=146;DPB=146.0;AC=1;AN=3;AF=0.25;RO=112;AO=34;PRO=0.0;PAO=0.0;QR=4197;QA=1242;PQR=0.0;PQA=0.0;SRF=57;SRR=55;SAF=14;SAR=20;SRP=3.08785;SAP=5.30951;AB=0.354167;ABP=20.744;RUN=1;RPP=4.03217;RPPR=16.1167;RPL=19.0;RPR=15.0;EPP=28.557;EPPR=40.5458;DPRA=1.92;ODDS=32.2311;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991071;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-3.091;Dels=0.0;FS=2.787;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.697;QD=11.38;ReadPosRankSum=-0.563;SOR=1.085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.822:50:50:1858:0:0:0.0,-13.5718,-167.47:0:0:50:50,0:.:0.0:0:.:.:.:0:.:.:0:-0.182923	0/1:129.501:96:62:2339:34:1242:-85.8198,0.0,-184.535:34:35:96:62,33:36.0:0.34:2:1121,0,2310:.:1:1:.:.:1:-0.0261709
chr7	27892700	.	C	T	3671.7	PASS	SOMATIC;NS=2;DP=496;DPB=496.0;AC=1;AN=3;AF=0.25;RO=360;AO=136;PRO=0.0;PAO=0.0;QR=13755;QA=5300;PQR=0.0;PQA=0.0;SRF=180;SRR=180;SAF=64;SAR=72;SRP=3.0103;SAP=4.03217;AB=0.355091;ABP=72.8659;RUN=1;RPP=3.07417;RPPR=5.92972;RPL=67.0;RPR=69.0;EPP=6.13977;EPPR=3.03443;DPRA=3.38938;ODDS=71.4175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9972;PAIRED=0.985294;PAIREDR=0.997222;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.865;Dels=0.0;FS=0.802;HaplotypeScore=9.8418;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.101;QD=12.41;ReadPosRankSum=0.364;SOR=0.74	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.924:110:113:4307:0:0:0.0,-30.5902,-387.598:0:0:110:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.182923	0/1:117.462:382:247:9448:136:5300:-372.961,0.0,-746.012:135:36:382:236,129:39.0:0.355:2:4767,0,9410:.:1:1:.:.:1:-0.0261709
chr7	27892836	.	C	T	14145.6	REJECT	NS=2;DP=506;DPB=587.0;AC=2;AN=4;AF=0.5;RO=127;AO=459;PRO=0.0;PAO=0.0;QR=4810;QA=17582;PQR=0.0;PQA=0.0;SRF=61;SRR=66;SAF=212;SAR=247;SRP=3.43776;SAP=8.80562;AB=0.781942;ABP=408.306;RUN=1;RPP=8.80562;RPPR=3.16418;RPL=212.0;RPR=247.0;EPP=6.98897;EPPR=3.43776;DPRA=0.0;ODDS=176.809;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995643;PAIREDR=0.992126;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.326;Dels=0.0;FS=1.4785;HaplotypeScore=9.7777;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2955;QD=27.355;ReadPosRankSum=1.8855;SOR=0.816;ClippingRankSum=-0.248	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:155:70:2672:92:3506:-271.575,0.0,-196.525:89:57:155:62,87:3145,0,2050:1:.:1:.:.:.:-0.182923	0/1:129.501:425:57:2138:367:14076:-1151.13,0.0,-77.4908:367:87:424:57,367:14450,0,1121:.:1:1:.:.:.:-0.0261709
chr7	27893086	.	G	A	2133.98	PASS	SOMATIC;NS=2;DP=361;DPB=361.0;AC=1;AN=3;AF=0.25;RO=277;AO=84;PRO=0.0;PAO=0.0;QR=10597;QA=3209;PQR=0.0;PQA=0.0;SRF=130;SRR=147;SAF=34;SAR=50;SRP=5.27584;SAP=9.62812;AB=0.329412;ABP=67.4647;RUN=1;RPP=3.1137;RPPR=5.27584;RPL=41.0;RPR=43.0;EPP=8.07707;EPPR=4.77413;DPRA=2.40566;ODDS=67.1543;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99639;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.592;Dels=0.0;FS=6.391;HaplotypeScore=10.7586;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.798;QD=11.09;ReadPosRankSum=-0.144;SOR=1.132	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:105:106:4034:0:0:0.0,-28.7388,-363.117:0:0:105:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.182923	0/1:129.501:255:171:6563:84:3209:-219.628,0.0,-521.284:84:33:255:167,81:38.0:0.324:2:2857,0,6551:.:1:1:.:.:1:-0.0261709
chr7	27893603	.	A	G	218.046	REJECT	NS=2;DP=22;DPB=22.0;AC=2;AN=4;AF=0.5;RO=12;AO=10;PRO=0.0;PAO=0.0;QR=419;QA=364;PQR=0.0;PQA=0.0;SRF=8;SRR=4;SAF=8;SAR=2;SRP=5.9056;SAP=10.8276;AB=0.454545;ABP=3.40511;RUN=1;RPP=6.48466;RPPR=3.73412;RPL=3.0;RPR=7.0;EPP=3.0103;EPPR=3.73412;DPRA=0.0;ODDS=4.35975;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.916667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.048;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.818;QD=16.93;ReadPosRankSum=-1.107;SOR=0.836	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18.9893:5:4:128:1:40:-2.30165,0.0,-10.3843:1:20:5:.:.:.:.:1:.:.:.:-4.33512	0/1:129.501:17:8:291:9:324:-24.6956,0.0,-21.7053:9:53:17:8,9:316,0,278:.:1:1:.:.:.:-0.0261709
chr7	27893667	.	A	G	758.621	REJECT	NS=2;DP=28;DPB=33.0;AC=3;AN=4;AF=0.75;RO=6;AO=27;PRO=0.0;PAO=0.0;QR=238;QA=1002;PQR=0.0;PQA=0.0;SRF=5;SRR=1;SAF=24;SAR=3;SRP=8.80089;SAP=38.4777;AB=0.444444;ABP=3.25157;RUN=1;RPP=6.95112;RPPR=4.45795;RPL=10.0;RPR=17.0;EPP=5.02092;EPPR=8.80089;DPRA=0.0;ODDS=8.97168;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.1111;MQMR=60.0;PAIRED=0.925926;PAIREDR=0.833333;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.469;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=59.595;MQRankSum=-1.0775;QD=22.96;ReadPosRankSum=-0.406;SOR=2.0235;ClippingRankSum=0.421	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:105.308:8:5:198:4:158:-11.9131,0.0,-15.5535:4:47:8:4,4:153,0,154:1:.:1:.:.:.:-4.33512	1/1:31.48205:24:1:40:23:844:-72.1314,-2.90175,0.0:23:96:24:1,23:886,24,0:.:1:1:.:.:.:-0.0261709
chr7	27894157	.	T	C	18.59	LowQual	SOMATIC;DP=1;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=18.59;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-4.33512	1/1:0,1:1:3.0:45,3,0:1:100:1:.:1:.:.:.:.:-0.0261709
chr7	27896074	.	G	C	167.214	REJECT	NS=2;DP=7;DPB=9.0;AC=2;AN=4;AF=0.5;RO=2;AO=7;PRO=0.0;PAO=0.0;QR=75;QA=271;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=0;SAR=7;SRP=7.35324;SAP=18.2106;AB=0.777778;ABP=9.04217;RUN=1;RPP=5.80219;RPPR=7.35324;RPL=5.0;RPR=2.0;EPP=5.80219;EPPR=7.35324;DPRA=0.0;ODDS=0.743033;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0;QD=22.78;ReadPosRankSum=0.0;SOR=1.741;ClippingRankSum=-0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18.008495:3:1:35:2:79:-6.52327,0.0,-2.42258:2:67:3:1,2:80,0,31:1:.:1:.:.:.:-19.7149	0/1:15.5552:6:1:40:5:192:-15.9294,0.0,-2.00732:5:83:6:1,5:198,0,27:.:1:1:.:.:.:-6.40611
chr7	27896295	.	T	C	11.12	LowQual	SOMATIC;DP=2;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.804;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=53.03;MQRankSum=0.804;QD=5.56;ReadPosRankSum=0.804;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-26.715	0/1:1,1:2:39.0:39,0,39:1:50:2:.:1:.:.:.:.:-6.40611
chr7	27900596	.	C	A	11647.1	REJECT	NS=2;DP=437;DPB=501.0;AC=2;AN=4;AF=0.5;RO=114;AO=386;PRO=0.0;PAO=0.0;QR=4444;QA=14541;PQR=0.0;PQA=0.0;SRF=58;SRR=56;SAF=193;SAR=193;SRP=3.08649;SAP=3.0103;AB=0.770459;ABP=321.324;RUN=1;RPP=9.51347;RPPR=5.75321;RPL=176.0;RPR=210.0;EPP=10.301;EPPR=10.6295;DPRA=0.0;ODDS=209.284;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997409;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.223;Dels=0.0;FS=0.565;HaplotypeScore=6.7898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.341;QD=25.805;ReadPosRankSum=0.6865;SOR=0.6265;ClippingRankSum=0.483	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.3455:126:59:2295:68:2550:-195.067,0.0,-172.132:68:54:126:57,68:2384,0,2045:1:.:1:.:.:.:0.00182088	0/1:121.3455:374:55:2149:318:11991:-977.5,0.0,-92.3067:318:85:373:55,318:12280,0,1310:.:1:1:.:.:.:-0.0111333
chr7	27900640	.	C	G	3740.54	PASS	SOMATIC;NS=2;DP=521;DPB=521.0;AC=1;AN=3;AF=0.25;RO=378;AO=143;PRO=0.0;PAO=0.0;QR=14376;QA=5444;PQR=0.0;PQA=0.0;SRF=176;SRR=202;SAF=74;SAR=69;SRP=6.89367;SAP=3.38993;AB=0.3575;ABP=73.5614;RUN=1;RPP=4.8477;RPPR=4.48093;RPL=66.0;RPR=77.0;EPP=19.5469;EPPR=3.0103;DPRA=3.30579;ODDS=76.3446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994709;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.571;Dels=0.0;FS=4.665;HaplotypeScore=4.8905;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.581;QD=12.23;ReadPosRankSum=-0.221;SOR=0.637	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.501:119:121:4560:0:0:0.0,-32.7301,-410.321:0:0:119:118,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.7505:398:257:9816:143:5444:-381.336,0.0,-774.517:143:36:398:245,137:38.0:0.357:2:4894,0,9661:.:1:1:.:.:1:-0.0111333
chr7	27901051	.	A	AT	1904.17	REJECT	NS=2;DP=339;DPB=447.077;AC=2;AN=2;AF=0.0;RO=233;AO=19;PRO=100.667;PAO=68.6667;QR=8799;QA=679;PQR=3613.83;PQA=2439.83;SRF=116;SRR=117;SAF=12;SAR=7;SRP=3.01962;SAP=5.8675;AB=0.0560472;ABP=583.357;RUN=1;RPP=4.03889;RPPR=5.70367;RPL=8.0;RPR=11.0;EPP=3.12459;EPPR=4.13797;DPRA=0.0;ODDS=162.649;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:91:41:1541:4:147:-125.346,-125.938,-271.137:4:5:85:.:.:1:.:.:.:0.00182088	./1:160.002:248:192:7258:15:532:-70.4979,-76.6877,-760.828:15:6:240:.:.:1:.:.:.:-0.0111333
chr7	27901051	.	AT	A	1904.17	REJECT	NS=2;DP=339;DPB=447.077;AC=2;AN=4;AF=0.5;RO=233;AO=73;PRO=100.667;PAO=78.6667;QR=8799;QA=2765;PQR=3613.83;PQA=2753.33;SRF=116;SRR=117;SAF=35;SAR=38;SRP=3.01962;SAP=3.27802;AB=0.215339;ABP=241.61;RUN=1;RPP=3.04005;RPPR=5.70367;RPL=36.0;RPR=37.0;EPP=3.04005;EPPR=4.13797;DPRA=0.0;ODDS=162.649;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986301;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.696;FS=6.392;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.601;QD=8.78;ReadPosRankSum=1.033;SOR=0.897;ClippingRankSum=-1.393	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:41:1541:40:1492:-125.346,0.0,-133.853:43:47:92:53,47:1047,0,1142:1:.:1:.:.:.:0.00182088	0/1:160.002:248:192:7258:33:1273:-70.4979,0.0,-702.626:33:14:240:.:.:.:.:1:.:.:.:-0.0111333
chr7	27901170	.	CT	C	7299.995	REJECT	NS=2;DP=358;DPB=427.2;AC=2;AN=4;AF=0.5;RO=89;AO=276;PRO=77.5;PAO=73.5;QR=3338;QA=10286;PQR=2717.5;PQA=2544.5;SRF=42;SRR=47;SAF=143;SAR=133;SRP=3.62026;SAP=3.79707;AB=0.726316;ABP=172.065;RUN=1;RPP=6.15736;RPPR=7.13366;RPL=128.0;RPR=148.0;EPP=6.81824;EPPR=3.0347;DPRA=0.0;ODDS=207.608;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=1;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992754;PAIREDR=0.988764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9945;FS=5.6695;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.406;QD=13.315;RPA=10,9;RU=T;ReadPosRankSum=0.32;SOR=1.176;STR;ClippingRankSum=0.521	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:43:1618:45:1689:-135.425,0.0,-136.191:45:49:92:50,46:1012,0,1085:1:.:1:.:.:.:0.00182088	0/1:129.501:311:46:1720:231:8597:-701.13,0.0,-91.1183:234:82:283:52,237:6342,0,613:.:1:1:.:.:.:-0.0111333
chr7	27901180	.	TCATGCACAAAGCTTTCTTCTCTCTGTAAGGAGAAGGTTG	CATGCACAAAGCTTTCTTCTCTCTGTAAGGAGCAGGTTGTTGT	.	PASS	SOMATIC;AC=1;AN=4;END=27901219;HOMLEN=0;SVLEN=-40;SVTYPE=RPL;NTLEN=43	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:0.00182088	0/1:158,251:251:61:409:.:.:.:1:.:.:-0.0111333
chr7	27901180	.	TCATGCACAAAGCTTTCTTCTCTCTGTAAGGAGAAGGTTG	CATGCACAAAGCTTTCTTCTCTCTGTAAGGAGAAGGTTGTTGT	.	PASS	AC=1;AN=4;END=27901219;HOMLEN=0;SVLEN=-40;SVTYPE=RPL;NTLEN=43	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:70,39:39:36:109:.:.:.:1:.:.:0.00182088	0/0:.:.:.:.:.:.:.:.:.:.:-0.0111333
chr7	27901219	.	G	GTTGT	9024.18	REJECT	NS=2;DP=396;DPB=574.867;AC=2;AN=4;AF=0.5;RO=98;AO=306;PRO=60.5;PAO=70.5;QR=3741;QA=10757;PQR=2114.5;PQA=2471.5;SRF=50;SRR=48;SAF=164;SAR=142;SRP=3.09893;SAP=6.44492;AB=0.721698;ABP=184.021;RUN=1;RPP=3.46446;RPPR=3.36483;RPL=157.0;RPR=149.0;EPP=4.82696;EPPR=6.20103;DPRA=0.0;ODDS=141.301;GTI=0;TYPE=ins;CIGAR=1M4I14M;NUMALT=1;MEANALT=6.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=0.996732;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;END=27901219;HOMLEN=6;HOMSEQ=TTGTTT;SVLEN=4;SVTYPE=INS;BaseQRankSum=0.0395;FS=8.2705;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5385;QD=26.51;RPA=1,2;RU=TTGT;ReadPosRankSum=-0.992;SOR=0.755;STR;ClippingRankSum=0.589	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.403:123:58:2213:59:2085:-157.193,0.0,-184.694:64:50:128:66,66:2519,0,2701:1:.:1:1:.:.:0.00182088	0/1:121.403:337:40:1528:247:8672:-752.119,0.0,-61.62:278:86:323:63,298:17144,0,1943:.:1:1:1:.:.:-0.0111333
chr7	27902935	.	G	A	3715.59	PASS	SOMATIC;NS=2;DP=496;DPB=496.0;AC=1;AN=3;AF=0.25;RO=352;AO=143;PRO=0.0;PAO=0.0;QR=13187;QA=5328;PQR=0.0;PQA=0.0;SRF=166;SRR=186;SAF=65;SAR=78;SRP=5.47788;SAP=5.57659;AB=0.381333;ABP=48.8776;RUN=1;RPP=6.42695;RPPR=3.89863;RPL=79.0;RPR=64.0;EPP=7.3988;EPPR=4.58955;DPRA=3.09917;ODDS=76.4015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993007;PAIREDR=0.997159;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.459;Dels=0.0;FS=2.864;HaplotypeScore=11.6224;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.163;QD=12.88;ReadPosRankSum=0.657;SOR=0.869	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:118:121:4501:0:0:0.0,-32.7548,-405.061:0:0:118:115,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:374:231:8686:143:5328:-377.996,0.0,-680.005:143:38:373:222,139:37.0:0.389:2:4845,0,8531:.:1:1:.:.:1:-0.0111333
chr7	27903096	.	C	T	3505.48	PASS	SOMATIC;NS=2;DP=497;DPB=497.0;AC=1;AN=3;AF=0.25;RO=365;AO=132;PRO=0.0;PAO=0.0;QR=13797;QA=5075;PQR=0.0;PQA=0.0;SRF=181;SRR=184;SAF=68;SAR=64;SRP=3.06384;SAP=3.27351;AB=0.356757;ABP=68.9526;RUN=1;RPP=3.0761;RPPR=3.49219;RPL=67.0;RPR=65.0;EPP=6.23461;EPPR=3.15903;DPRA=2.91339;ODDS=80.1781;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994521;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.917;Dels=0.0;FS=2.305;HaplotypeScore=7.7446;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.364;QD=12.31;ReadPosRankSum=-0.01;SOR=0.694	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.913:123:127:4805:0:0:0.0,-34.3949,-432.401:0:0:123:120,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.9565:370:238:8992:132:5075:-356.254,0.0,-708.593:132:36:370:232,129:38.0:0.358:2:4584,0,8932:.:1:1:.:.:1:-0.0111333
chr7	27903215	.	A	C	11931.8	REJECT	NS=2;DP=446;DPB=516.0;AC=2;AN=4;AF=0.5;RO=120;AO=396;PRO=0.0;PAO=0.0;QR=4546;QA=14905;PQR=0.0;PQA=0.0;SRF=56;SRR=64;SAF=189;SAR=207;SRP=4.16842;SAP=4.78696;AB=0.767442;ABP=323.58;RUN=1;RPP=12.6832;RPPR=4.81986;RPL=177.0;RPR=219.0;EPP=4.41408;EPPR=3.66174;DPRA=0.0;ODDS=145.322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2455;Dels=0.0;FS=2.0155;HaplotypeScore=11.8978;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.16;QD=24.99;ReadPosRankSum=0.883;SOR=0.6315;ClippingRankSum=-0.368	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.845:139:71:2706:69:2499:-186.964,0.0,-206.016:68:49:139:70,68:2270,0,2399:1:.:1:.:.:.:0.00182088	0/1:117.845:376:49:1840:327:12406:-1013.99,0.0,-63.7206:327:87:376:49,327:12757,0,939:.:1:1:.:.:.:-0.0111333
chr7	27903830	.	C	A	6204.290000000001	REJECT	NS=2;DP=404;DPB=462.0;AC=2;AN=4;AF=0.5;RO=237;AO=224;PRO=0.0;PAO=0.0;QR=8964;QA=8570;PQR=0.0;PQA=0.0;SRF=130;SRR=107;SAF=119;SAR=105;SRP=7.85717;SAP=4.91034;AB=0.484848;ABP=3.93153;RUN=1;RPP=7.70223;RPPR=6.3179;RPL=101.0;RPR=123.0;EPP=3.16541;EPPR=4.11894;DPRA=0.0;ODDS=347.973;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995536;PAIREDR=0.983122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9575;Dels=0.0;FS=3.1795;HaplotypeScore=4.8794;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3735;QD=17.855;ReadPosRankSum=-0.101;SOR=0.711;ClippingRankSum=-1.639	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.895:109:53:2020:58:2224:-170.084,0.0,-151.724:57:52:109:52,56:2008,0,1754:1:.:1:.:.:.:0.00182088	0/1:118.895:348:184:6944:166:6346:-476.392,0.0,-529.793:165:47:347:180,165:6040,0,6578:.:1:1:.:.:.:-0.0111333
chr7	27904259	.	C	T	6705.09	REJECT	NS=2;DP=440;DPB=505.0;AC=2;AN=4;AF=0.5;RO=263;AO=242;PRO=0.0;PAO=0.0;QR=9931;QA=9205;PQR=0.0;PQA=0.0;SRF=114;SRR=149;SAF=118;SAR=124;SRP=13.1246;SAP=3.33333;AB=0.479208;ABP=4.90658;RUN=1;RPP=4.76901;RPPR=9.95406;RPL=128.0;RPR=114.0;EPP=15.9674;EPPR=5.39644;DPRA=0.0;ODDS=397.852;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995868;PAIREDR=0.996198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.52;Dels=0.0;FS=3.8945;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.312;QD=17.21;ReadPosRankSum=0.034;SOR=0.471;ClippingRankSum=1.098	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5755:128:68:2548:62:2315:-173.137,0.0,-194.088:61:48:128:65,61:2157,0,2210:1:.:1:.:.:.:0.00182088	0/1:119.5755:375:195:7383:180:6890:-518.18,0.0,-562.477:180:48:375:195,180:6602,0,7085:.:1:1:.:.:.:-0.0111333
chr7	27904674	.	T	G	9046.11	REJECT	NS=2;DP=346;DPB=399.0;AC=2;AN=4;AF=0.5;RO=99;AO=299;PRO=0.0;PAO=0.0;QR=3755;QA=11426;PQR=0.0;PQA=0.0;SRF=32;SRR=67;SAF=114;SAR=185;SRP=29.8795;SAP=39.6203;AB=0.749373;ABP=218.53;RUN=1;RPP=53.0413;RPPR=5.66432;RPL=191.0;RPR=108.0;EPP=3.07566;EPPR=5.66432;DPRA=0.0;ODDS=128.626;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9097;MQMR=60.0;PAIRED=0.986622;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.301;Dels=0.0;FS=9.592;HaplotypeScore=8.7653;MLEAC=1;MLEAF=0.5;MQ=59.965;MQRankSum=-0.654;QD=24.44;ReadPosRankSum=1.397;SOR=0.4685;ClippingRankSum=0.462	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:58:2217:47:1755:-129.51,0.0,-171.114:46:44:104:58,45:1614,0,1976:1:.:1:.:.:.:0.00182088	0/1:129.501:294:41:1538:252:9671:-790.153,0.0,-59.005:252:86:293:41,252:9915,0,831:.:1:1:.:.:.:-0.0111333
chr7	27905732	.	A	G	2624.08	PASS	SOMATIC;NS=2;DP=429;DPB=429.0;AC=1;AN=3;AF=0.25;RO=324;AO=105;PRO=0.0;PAO=0.0;QR=12309;QA=3920;PQR=0.0;PQA=0.0;SRF=161;SRR=163;SAF=55;SAR=50;SRP=3.03711;SAP=3.52732;AB=0.339806;ABP=71.886;RUN=1;RPP=4.68544;RPPR=4.32391;RPL=48.0;RPR=57.0;EPP=13.9504;EPPR=4.72603;DPRA=2.575;ODDS=75.8241;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.737;Dels=0.0;FS=2.037;HaplotypeScore=9.9318;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.718;QD=11.08;ReadPosRankSum=0.076;SOR=0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:118:120:4569:0:0:0.0,-32.504,-411.187:0:0:118:116,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:309:204:7740:105:3920:-268.922,0.0,-612.933:105:34:309:196,102:37.0:0.346:2:3452,0,7724:.:1:1:.:.:1:-0.0111333
chr7	27905918	.	G	A	11890.8	REJECT	NS=2;DP=429;DPB=490.0;AC=2;AN=4;AF=0.5;RO=106;AO=384;PRO=0.0;PAO=0.0;QR=4015;QA=14780;PQR=0.0;PQA=0.0;SRF=66;SRR=40;SAF=213;SAR=171;SRP=16.8586;SAP=12.9855;AB=0.783673;ABP=345.5;RUN=1;RPP=3.37221;RPPR=4.32138;RPL=188.0;RPR=196.0;EPP=4.11866;EPPR=8.25461;DPRA=0.0;ODDS=126.053;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994792;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.266;Dels=0.0;FS=3.253;HaplotypeScore=4.8569;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.2285;QD=26.1;ReadPosRankSum=-0.8735;SOR=0.5355;ClippingRankSum=0.328	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:119:60:2300:61:2356:-179.232,0.0,-174.197:60:50:119:59,59:2120,0,2054:1:.:1:.:.:.:0.00182088	0/1:129.501:368:46:1715:323:12424:-1017.46,0.0,-54.3486:322:88:368:46,322:12715,0,828:.:1:1:.:.:.:-0.0111333
chr7	27906384	.	C	T	12702.2	REJECT	NS=2;DP=466;DPB=533.0;AC=2;AN=4;AF=0.5;RO=117;AO=416;PRO=0.0;PAO=0.0;QR=4416;QA=15808;PQR=0.0;PQA=0.0;SRF=56;SRR=61;SAF=190;SAR=226;SRP=3.47429;SAP=9.77527;AB=0.780488;ABP=367.235;RUN=1;RPP=3.19822;RPPR=3.02886;RPL=211.0;RPR=205.0;EPP=4.0334;EPPR=6.14687;DPRA=0.0;ODDS=103.496;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995192;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9155;Dels=0.0;FS=4.4605;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.515;QD=25.065;ReadPosRankSum=1.2255;SOR=0.616;ClippingRankSum=-0.523	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:132:72:2704:60:2338:-174.622,0.0,-207.57:60:45:132:72,60:2109,0,2524:1:.:1:.:.:.:0.00182088	0/1:129.501:400:45:1712:356:13470:-1102.92,0.0,-45.4036:355:89:400:45,355:13826,0,723:.:1:1:.:.:.:-0.0111333
chr7	27906711	.	T	C	3354.32	PASS	SOMATIC;NS=2;DP=435;DPB=435.0;AC=1;AN=3;AF=0.25;RO=310;AO=125;PRO=0.0;PAO=0.0;QR=11806;QA=4807;PQR=0.0;PQA=0.0;SRF=158;SRR=152;SAF=65;SAR=60;SRP=3.26247;SAP=3.44459;AB=0.37092;ABP=51.7814;RUN=1;RPP=5.94613;RPPR=7.74551;RPL=56.0;RPR=69.0;EPP=3.02767;EPPR=45.6272;DPRA=3.43878;ODDS=62.0801;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9516;PAIRED=1.0;PAIREDR=0.990323;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.754;Dels=0.0;FS=0.0;HaplotypeScore=3.8487;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.192;QD=12.97;ReadPosRankSum=1.407;SOR=0.679	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:149.769:96:98:3708:0:0:0.0,-26.5351,-333.751:0:0:96:95,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:124.3845:337:212:8098:125:4807:-341.086,0.0,-637.118:125:37:337:206,122:38.0:0.372:2:4400,0,8045:.:1:1:.:.:1:-0.0111333
chr7	27906927	.	A	C	10312.3	REJECT	NS=2;DP=380;DPB=429.0;AC=2;AN=4;AF=0.5;RO=94;AO=335;PRO=0.0;PAO=0.0;QR=3618;QA=12846;PQR=0.0;PQA=0.0;SRF=49;SRR=45;SAF=155;SAR=180;SRP=3.37991;SAP=7.06155;AB=0.780886;ABP=296.999;RUN=1;RPP=14.9955;RPPR=3.1027;RPL=189.0;RPR=146.0;EPP=4.10576;EPPR=4.48875;DPRA=0.0;ODDS=146.368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989362;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9185;Dels=0.0;FS=4.469;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.425;QD=25.21;ReadPosRankSum=0.5415;SOR=0.957;ClippingRankSum=-0.429	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:50:1900:47:1727:-129.183,0.0,-144.764:46:47:96:50,45:1531,0,1831:1:.:1:.:.:.:0.00182088	0/1:129.501:332:44:1718:288:11119:-910.146,0.0,-64.5761:288:87:332:44,288:11517,0,929:.:1:1:.:.:.:-0.0111333
chr7	27907066	.	G	T	16143.85	REJECT	NS=2;DP=427;DPB=485.0;AC=4;AN=4;AF=1.0;RO=0;AO=484;PRO=0.0;PAO=0.0;QR=0;QA=18467;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=249;SAR=235;SRP=0.0;SAP=3.88966;AB=0.0;ABP=0.0;RUN=1;RPP=3.45895;RPPR=0.0;RPL=237.0;RPR=247.0;EPP=4.15885;EPPR=0.0;DPRA=0.0;ODDS=76.6596;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995868;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8457;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=35.18;SOR=0.825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4388:-394.905,-31.4178,0.0:114:100:114:0,113:4518,339,0:1:.:1:.:.:.:0.00182088	1/1:129.501:369:0:0:368:14079:-1266.26,-99.648,0.0:368:100:368:0,368:15750,1093,0:.:1:1:.:.:.:-0.0111333
chr7	27907572	.	G	A	11009.3	REJECT	NS=2;DP=405;DPB=451.0;AC=2;AN=4;AF=0.5;RO=92;AO=357;PRO=0.0;PAO=0.0;QR=3508;QA=13674;PQR=0.0;PQA=0.0;SRF=50;SRR=42;SAF=190;SAR=167;SRP=4.52089;SAP=6.22797;AB=0.791574;ABP=336.045;RUN=1;RPP=9.6342;RPPR=3.38795;RPL=162.0;RPR=195.0;EPP=3.50299;EPPR=3.38795;DPRA=0.0;ODDS=151.607;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.552;Dels=0.0;FS=0.8695;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8535;QD=26.035;ReadPosRankSum=-0.1595;SOR=0.6975;ClippingRankSum=-0.242	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.4745:88:45:1685:45:1718:-130.29,0.0,-127.294:44:50:88:43,44:1599,0,1408:1:.:1:.:.:.:0.00182088	0/1:125.4745:360:47:1823:312:11956:-978.1,0.0,-66.7514:312:87:359:47,312:12277,0,982:.:1:1:.:.:.:-0.0111333
chr7	27907593	.	C	T	11540.5	REJECT	NS=2;DP=416;DPB=461.0;AC=2;AN=4;AF=0.5;RO=89;AO=372;PRO=0.0;PAO=0.0;QR=3472;QA=14302;PQR=0.0;PQA=0.0;SRF=45;SRR=44;SAF=181;SAR=191;SRP=3.0347;SAP=3.59403;AB=0.806941;ABP=380.258;RUN=1;RPP=6.95631;RPPR=3.22989;RPL=173.0;RPR=199.0;EPP=8.98769;EPPR=10.0615;DPRA=0.0;ODDS=153.147;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2385;Dels=0.0;FS=0.408;HaplotypeScore=3.9648;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5055;QD=27.13;ReadPosRankSum=0.0345;SOR=0.7225;ClippingRankSum=1.084	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:41:1608:48:1800:-137.914,0.0,-120.649:47:54:87:39,47:1728,0,1390:1:.:1:.:.:.:0.00182088	0/1:129.501:372:48:1864:324:12502:-1023.64,0.0,-66.9221:324:87:372:48,324:12863,0,988:.:1:1:.:.:.:-0.0111333
chr7	27908326	.	T	C	11616.6	REJECT	NS=2;DP=425;DPB=489.0;AC=2;AN=4;AF=0.5;RO=113;AO=376;PRO=0.0;PAO=0.0;QR=4335;QA=14470;PQR=0.0;PQA=0.0;SRF=54;SRR=59;SAF=199;SAR=177;SRP=3.49071;SAP=5.80549;AB=0.768916;ABP=310.165;RUN=1;RPP=4.14224;RPPR=4.56684;RPL=195.0;RPR=181.0;EPP=8.9241;EPPR=5.3355;DPRA=0.0;ODDS=146.42;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9973;MQMR=60.0;PAIRED=0.99734;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.599;Dels=0.0;FS=2.8505;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4665;QD=25.1;ReadPosRankSum=-1.5825;SOR=0.683;ClippingRankSum=-0.394	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8265:127:67:2545:60:2337:-175.911,0.0,-194.604:60:47:127:67,60:2046,0,2360:1:.:1:.:.:.:0.00182088	0/1:119.8265:362:46:1790:316:12133:-993.186,0.0,-62.9806:316:87:362:46,316:12448,0,938:.:1:1:.:.:.:-0.0111333
chr7	27908541	.	T	C	13196.3	REJECT	NS=2;DP=488;DPB=553.0;AC=2;AN=4;AF=0.5;RO=123;AO=430;PRO=0.0;PAO=0.0;QR=4675;QA=16416;PQR=0.0;PQA=0.0;SRF=66;SRR=57;SAF=223;SAR=207;SRP=4.44029;SAP=4.30308;AB=0.777577;ABP=373.099;RUN=1;RPP=5.91906;RPPR=3.45166;RPL=227.0;RPR=203.0;EPP=4.64648;EPPR=5.14646;DPRA=0.0;ODDS=185.535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995349;PAIREDR=0.99187;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.687;Dels=0.0;FS=3.7385;HaplotypeScore=5.8903;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1005;QD=25.14;ReadPosRankSum=0.0005;SOR=0.8705;ClippingRankSum=0.75	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:127:66:2491:63:2406:-181.58,0.0,-189.22:61:48:127:66,60:2100,0,2313:1:.:1:.:.:.:0.00182088	0/1:129.501:424:57:2184:367:14010:-1145.18,0.0,-81.6614:367:87:424:57,367:14375,0,1186:.:1:1:.:.:.:-0.0111333
chr7	27909578	.	A	G	1181.4	PASS	SOMATIC;NS=2;DP=150;DPB=150.0;AC=1;AN=3;AF=0.25;RO=102;AO=48;PRO=0.0;PAO=0.0;QR=3845;QA=1787;PQR=0.0;PQA=0.0;SRF=15;SRR=87;SAF=4;SAR=44;SRP=113.372;SAP=75.3927;AB=0.436364;ABP=6.87947;RUN=1;RPP=3.73412;RPPR=3.35092;RPL=26.0;RPR=22.0;EPP=5.9056;EPPR=3.7767;DPRA=2.75;ODDS=25.9286;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.7353;PAIRED=0.979167;PAIREDR=0.990196;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.955;Dels=0.0;FS=1.237;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.278;QD=14.62;ReadPosRankSum=-1.419;SOR=0.998	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:112.575:40:40:1479:0:0:0.0,-10.8347,-132.772:0:0:40:40,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.317:110:62:2366:48:1787:-131.413,0.0,-183.162:48:44:110:61,47:37.0:0.435:2:1636,0,2336:.:1:1:.:.:1:-0.0111333
chr7	27909694	.	A	ATTTTTTTTT	115.06	PASS	DP=22;AC=1;AN=4;AF=0.5;BaseQRankSum=0.731;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=54.02;MQRankSum=-0.731;QD=5.23;ReadPosRankSum=0.727;SOR=1.447;ClippingRankSum=0.731	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3,4:7:86.0:141,0,86:4:57:7:1:.:.:.:.:.:0.00182088	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0111333
chr7	27909694	.	ATT	A	30.9459	REJECT	NS=2;DP=36;DPB=97.1;AC=2;AN=4;AF=0.5;RO=6;AO=7;PRO=50.3333;PAO=41.3333;QR=207;QA=134;PQR=1801.33;PQA=1415.33;SRF=0;SRR=6;SAF=1;SAR=6;SRP=16.0391;SAP=10.7656;AB=0.194444;ABP=32.2045;RUN=1;RPP=3.32051;RPPR=16.0391;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=16.0391;DPRA=0.0;ODDS=6.31416;GTI=0;TYPE=del;CIGAR=1M2D37M;NUMALT=3;MEANALT=11.0;LEN=2;MQM=48.5714;MQMR=49.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.33;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=53.25;MQRankSum=0.636;QD=2.2;RPA=23,21;RU=T;ReadPosRankSum=1.214;SOR=0.368;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:25.6644:14:3:104:3:54:-3.50338,0.0,-31.9668:3:43:7:.:.:.:.:1:.:.:.:0.00182088	0/1:62.41955:55:3:103:4:80:-4.27866,0.0,-125.892:11:33:34:37,19:226,0,680:.:1:1:.:.:.:-0.0111333
chr7	27909694	.	ATTT	A	30.9459	REJECT	NS=2;DP=36;DPB=97.1;AC=2;AN=2;AF=0.0;RO=6;AO=4;PRO=50.3333;PAO=35.0;QR=207;QA=152;PQR=1801.33;PQA=1239.33;SRF=0;SRR=6;SAF=3;SAR=1;SRP=16.0391;SAP=5.18177;AB=0.111111;ABP=50.3001;RUN=1;RPP=5.18177;RPPR=16.0391;RPL=1.0;RPR=3.0;EPP=11.6962;EPPR=16.0391;DPRA=0.0;ODDS=6.31416;GTI=0;TYPE=del;CIGAR=1M3D36M;NUMALT=3;MEANALT=11.0;LEN=3;MQM=60.0;MQMR=49.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:25.6644:14:3:104:1:38:-3.50338,-4.14979,-45.4534:1:14:7:.:.:1:.:.:.:0.00182088	./1:25.8391:22:3:103:3:114:-4.27866,-7.29283,-134.749:3:25:12:.:.:1:.:.:.:-0.0111333
chr7	27909716	.	TTG	T	30.9459	REJECT	NS=2;DP=36;DPB=97.1;AC=2;AN=2;AF=0.0;RO=6;AO=2;PRO=50.3333;PAO=35.3333;QR=207;QA=28;PQR=1801.33;PQA=1239.0;SRF=0;SRR=6;SAF=2;SAR=0;SRP=16.0391;SAP=7.35324;AB=0.0909091;ABP=34.9902;RUN=1;RPP=7.35324;RPPR=16.0391;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=16.0391;DPRA=0.0;ODDS=6.31416;GTI=0;TYPE=del;CIGAR=23M2D15M;NUMALT=3;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=49.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:25.6644:14:3:104:0:0:-3.50338,-9.65935,-88.8239:0:0:7:.:.:1:.:.:.:0.00182088	./1:25.8391:22:3:103:2:28:-4.27866,-29.1328,-325.976:2:17:12:.:.:1:.:.:.:-0.0111333
chr7	27909851	.	G	C	1595.85	PASS	SOMATIC;NS=2;DP=249;DPB=249.0;AC=1;AN=3;AF=0.25;RO=182;AO=66;PRO=0.0;PAO=0.0;QR=6905;QA=2446;PQR=0.0;PQA=0.0;SRF=125;SRR=57;SAF=40;SAR=26;SRP=58.18;SAP=9.45891;AB=0.340206;ABP=46.0368;RUN=1;RPP=18.9344;RPPR=13.7484;RPL=22.0;RPR=44.0;EPP=13.6703;EPPR=12.3643;DPRA=3.52727;ODDS=35.3274;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.969697;PAIREDR=0.994505;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.498;Dels=0.0;FS=4.827;HaplotypeScore=3.8794;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.652;QD=10.65;ReadPosRankSum=-0.082;SOR=0.416	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.239:54:55:2075:0:0:0.0,-14.9165,-186.952:0:0:54:53,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.778:191:127:4830:66:2446:-167.789,0.0,-382.296:64:34:190:122,62:37.0:0.335:2:2062,0,4788:.:1:1:.:.:1:-0.0111333
chr7	27910566	.	T	C	3061.42	PASS	SOMATIC;NS=2;DP=491;DPB=491.0;AC=1;AN=3;AF=0.25;RO=369;AO=121;PRO=0.0;PAO=0.0;QR=14003;QA=4612;PQR=0.0;PQA=0.0;SRF=190;SRR=179;SAF=66;SAR=55;SRP=3.72235;SAP=5.18177;AB=0.320955;ABP=107.984;RUN=1;RPP=5.18177;RPPR=5.13469;RPL=55.0;RPR=66.0;EPP=14.2266;EPPR=7.30028;DPRA=3.30702;ODDS=72.0439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99729;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.946;Dels=0.0;FS=0.401;HaplotypeScore=5.8372;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.849;QD=10.63;ReadPosRankSum=0.765;SOR=0.741	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.248:111:114:4295:0:0:0.0,-30.8623,-386.53:0:0:111:108,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:118.124:377:255:9708:121:4612:-312.99,0.0,-771.33:121:32:376:249,118:38.0:0.322:2:4034,0,9728:.:1:1:.:.:1:-0.0111333
chr7	27911353	.	G	A	3241.05	PASS	SOMATIC;NS=2;DP=506;DPB=506.0;AC=1;AN=3;AF=0.25;RO=381;AO=125;PRO=0.0;PAO=0.0;QR=14498;QA=4779;PQR=0.0;PQA=0.0;SRF=194;SRR=187;SAF=56;SAR=69;SRP=3.28957;SAP=5.94613;AB=0.338753;ABP=86.3442;RUN=1;RPP=3.16665;RPPR=27.0903;RPL=64.0;RPR=61.0;EPP=5.11229;EPPR=13.5485;DPRA=2.69343;ODDS=86.4026;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992;PAIREDR=0.997375;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.69;Dels=0.0;FS=5.737;HaplotypeScore=7.7789;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.294;QD=11.49;ReadPosRankSum=-1.73;SOR=0.87	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.744:135:137:5193:0:0:0.0,-37.0982,-467.284:0:0:135:133,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:122.372:369:244:9305:125:4779:-329.939,0.0,-736.992:125:34:369:239,119:38.0:0.327:2:4268,0,9285:.:1:1:.:.:1:-0.0111333
chr7	27912080	.	C	T	12540.5	REJECT	NS=2;DP=446;DPB=508.0;AC=2;AN=4;AF=0.5;RO=104;AO=404;PRO=0.0;PAO=0.0;QR=4033;QA=15604;PQR=0.0;PQA=0.0;SRF=64;SRR=40;SAF=224;SAR=180;SRP=15.0369;SAP=13.4162;AB=0.795276;ABP=387.72;RUN=1;RPP=15.3941;RPPR=4.34659;RPL=226.0;RPR=178.0;EPP=34.0559;EPPR=4.34659;DPRA=0.0;ODDS=173.402;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992574;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3195;Dels=0.0;FS=4.432;HaplotypeScore=5.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9345;QD=27.14;ReadPosRankSum=0.624;SOR=0.431;ClippingRankSum=0.628	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:53:2017:70:2692:-208.957,0.0,-148.176:69:57:121:52,68:2423,0,1699:1:.:1:.:.:.:0.00182088	0/1:129.501:385:51:2016:334:12912:-1057.0,0.0,-77.3986:334:87:385:51,334:13308,0,1109:.:1:1:.:.:.:-0.0111333
chr7	27914334	.	C	CTCG	10278.715	PASS	DP=182;AC=4;AN=4;AF=1.0;MQ0=0;ALERT;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.125;SOR=0.879	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,96:96:99.0:4590,307,0:96:100:96:1:.:.:.:.:.:0.00182088	1/1:0,262:268:99.0:16042,789,0:262:100:262:.:1:.:.:.:.:-0.0111333
chr7	27914335	.	GAGATC	TCGGAATGA	.	PASS	AC=4;AN=4;END=27914340;HOMLEN=0;SVLEN=-6;SVTYPE=RPL;NTLEN=9	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,134:134:100:134:.:.:.:1:.:.:0.00182088	1/1:7,419:419:98:426:.:.:.:1:.:.:-0.0111333
chr7	27914336	.	A	AAT	6727.73	PASS	DP=133;AC=4;AN=4;AF=1.0;MQ0=0;ALERT;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.285;SOR=0.8495	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,100:100:99.0:4770,319,0:100:100:100:1:.:.:.:.:.:0.00182088	1/1:0,166:164:99.0:8760,500,0:166:100:166:.:1:.:.:.:.:-0.0111333
chr7	27914338	.	ATC	A	7066.88	REJECT	NS=2;DP=190;DPB=114.25;AC=4;AN=4;AF=1.0;RO=0;AO=214;PRO=4.0;PAO=11.0;QR=0;QA=7650;PQR=0.0;PQA=252.0;SRF=0;SRR=0;SAF=114;SAR=100;SRP=0.0;SAP=4.99913;AB=0.0;ABP=0.0;RUN=1;RPP=3.65971;RPPR=0.0;RPL=103.0;RPR=111.0;EPP=7.06913;EPPR=0.0;DPRA=0.0;ODDS=35.4717;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;ALERT;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.045;SOR=0.938	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.17:76:0:0:50:1770:-159.478,-13.5301,0.0:75:100:75:0,101:4680,313,0:1:.:1:.:.:.:0.00182088	1/1:129.501:164:0:0:164:5880:-551.669,-46.2127,0.0:165:100:165:0,166:8767,500,0:.:1:1:.:.:.:-0.0111333
chr7	27914584	.	GA	G	9795.24	REJECT	NS=2;DP=413;DPB=415.2;AC=2;AN=4;AF=0.5;RO=131;AO=335;PRO=11.5;PAO=16.5;QR=4909;QA=12141;PQR=385.0;PQA=548.0;SRF=61;SRR=70;SAF=177;SAR=158;SRP=4.35297;SAP=5.3503;AB=0.715812;ABP=192.337;RUN=1;RPP=3.17235;RPPR=11.7791;RPL=165.0;RPR=170.0;EPP=3.32792;EPPR=16.9508;DPRA=0.0;ODDS=269.567;GTI=0;TYPE=del;CIGAR=1M1D3M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.3582;MQMR=60.0;PAIRED=0.99403;PAIREDR=0.984733;technology.ILLUMINA=1.0;MQ0=0;END=27914585;HOMLEN=1;HOMSEQ=A;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-0.3885;FS=9.9325;MLEAC=1;MLEAF=0.5;MQ=60.385;MQRankSum=0.281;QD=21.965;RPA=2,1;RU=A;ReadPosRankSum=0.1385;SOR=0.691;STR;ClippingRankSum=0.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:125:70:2598:52:1875:-137.59,0.0,-203.427:56:44:127:96,78:1668,0,2244:1:.:1:1:.:.:0.00182088	0/1:129.501:351:61:2311:283:10266:-848.599,0.0,-117.699:290:82:352:201,393:11166,0,1565:.:1:1:1:.:.:-0.0111333
chr7	27914839	.	C	A	10974.6	REJECT	NS=2;DP=419;DPB=476.0;AC=2;AN=4;AF=0.5;RO=112;AO=363;PRO=0.0;PAO=0.0;QR=4325;QA=13713;PQR=0.0;PQA=0.0;SRF=54;SRR=58;SAF=163;SAR=200;SRP=3.32051;SAP=11.1997;AB=0.762605;ABP=288.13;RUN=1;RPP=4.7391;RPPR=4.94911;RPL=173.0;RPR=190.0;EPP=3.15985;EPPR=3.08785;DPRA=0.0;ODDS=208.138;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991736;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.93;Dels=0.0;FS=1.2825;HaplotypeScore=11.8087;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.6825;QD=25.075;ReadPosRankSum=0.6215;SOR=0.829;ClippingRankSum=0.428	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:58:2225:55:2080:-156.606,0.0,-169.626:55:49:113:58,55:2003,0,2021:1:.:1:.:.:.:0.00182088	0/1:129.501:363:54:2100:308:11633:-948.296,0.0,-90.8688:308:85:362:54,308:11889,0,1289:.:1:1:.:.:.:-0.0111333
chr7	27916042	.	A	G	16660.8	REJECT	NS=2;DP=443;DPB=502.0;AC=4;AN=4;AF=1.0;RO=1;AO=501;PRO=0.0;PAO=0.0;QR=39;QA=18991;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=249;SAR=252;SRP=5.18177;SAP=3.04931;AB=0.0;ABP=0.0;RUN=1;RPP=4.57497;RPPR=5.18177;RPL=241.0;RPR=260.0;EPP=8.94392;EPPR=5.18177;DPRA=0.0;ODDS=77.1942;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996008;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.085;Dels=0.0;FS=1.5165;HaplotypeScore=6.9003;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.021;QD=27.395;ReadPosRankSum=0.499;SOR=0.5275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:117:4351:-391.547,-31.65,0.0:115:100:115:0,114:4593,341,0:1:.:1:.:.:.:0.00182088	1/1:129.501:385:1:39:384:14640:-1313.23,-100.749,0.0:384:100:385:1,384:16344,1100,0:.:1:1:.:.:.:-0.0111333
chr7	27916893	.	T	C	11876.6	REJECT	NS=2;DP=427;DPB=495.0;AC=2;AN=4;AF=0.5;RO=105;AO=390;PRO=0.0;PAO=0.0;QR=3914;QA=14766;PQR=0.0;PQA=0.0;SRF=50;SRR=55;SAF=185;SAR=205;SRP=3.52732;SAP=5.23745;AB=0.787879;ABP=359.329;RUN=1;RPP=3.81207;RPPR=3.19643;RPL=201.0;RPR=189.0;EPP=4.1016;EPPR=7.66346;DPRA=0.0;ODDS=73.0398;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.555;Dels=0.0;FS=0.3205;HaplotypeScore=6.8483;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.312;QD=26.09;ReadPosRankSum=0.3005;SOR=0.7155;ClippingRankSum=0.74	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9565:134:68:2477:67:2556:-193.866,0.0,-186.322:66:50:134:67,66:2357,0,2155:1:.:1:.:.:.:0.00182088	0/1:119.9565:360:37:1437:323:12210:-1000.69,0.0,-31.8189:323:90:360:37,323:12511,0,560:.:1:1:.:.:.:-0.0111333
chr7	27917884	.	T	C	11283.8	REJECT	NS=2;DP=434;DPB=490.0;AC=2;AN=4;AF=0.5;RO=115;AO=375;PRO=0.0;PAO=0.0;QR=4361;QA=14107;PQR=0.0;PQA=0.0;SRF=58;SRR=57;SAF=173;SAR=202;SRP=3.02918;SAP=7.88019;AB=0.765306;ABP=302.585;RUN=1;RPP=11.8178;RPPR=3.02918;RPL=168.0;RPR=207.0;EPP=3.98891;EPPR=26.1412;DPRA=0.0;ODDS=266.445;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4705;Dels=0.0;FS=1.2005;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.092;QD=25.46;ReadPosRankSum=-0.141;SOR=0.8215;ClippingRankSum=0.915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:50:1900:61:2335:-180.096,0.0,-140.919:60:54:110:50,59:2149,0,1785:1:.:1:.:.:.:0.00182088	0/1:129.501:379:65:2461:314:11772:-956.201,0.0,-118.792:314:83:379:65,314:12021,0,1619:.:1:1:.:.:.:-0.0111333
chr7	27918415	.	T	C	12472.1	REJECT	NS=2;DP=455;DPB=519.0;AC=2;AN=4;AF=0.5;RO=113;AO=405;PRO=0.0;PAO=0.0;QR=4384;QA=15499;PQR=0.0;PQA=0.0;SRF=55;SRR=58;SAF=206;SAR=199;SRP=3.18325;SAP=3.27302;AB=0.780347;ABP=357.312;RUN=1;RPP=3.44459;RPPR=4.56684;RPL=198.0;RPR=207.0;EPP=3.14434;EPPR=11.4848;DPRA=0.0;ODDS=240.966;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995062;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0205;Dels=0.0;FS=0.8785;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1335;QD=27.06;ReadPosRankSum=0.4655;SOR=0.6065;ClippingRankSum=0.808	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.8895:123:52:2019:73:2830:-220.794,0.0,-147.809:72:58:123:50,71:2634,0,1811:1:.:1:.:.:.:0.00182088	0/1:120.8895:393:61:2365:332:12669:-1033.0,0.0,-106.299:331:84:392:61,330:12870,0,1500:.:1:1:.:.:.:-0.0111333
chr7	27919474	.	G	A	3558.42	PASS	SOMATIC;NS=2;DP=512;DPB=512.0;AC=1;AN=3;AF=0.25;RO=377;AO=134;PRO=0.0;PAO=0.0;QR=14245;QA=5181;PQR=0.0;PQA=0.0;SRF=186;SRR=191;SAF=73;SAR=61;SRP=3.1543;SAP=5.34382;AB=0.34715;ABP=81.3408;RUN=1;RPP=3.26958;RPPR=5.08961;RPL=69.0;RPR=65.0;EPP=3.59368;EPPR=7.85435;DPRA=3.06349;ODDS=78.9449;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992042;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.163;Dels=0.0;FS=5.434;HaplotypeScore=9.7035;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.532;QD=12.02;ReadPosRankSum=0.283;SOR=0.841	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:123:125:4735:0:0:0.0,-33.8594,-426.121:0:0:122:119,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:385:252:9510:134:5181:-361.52,0.0,-750.801:134:35:385:241,128:38.0:0.346:2:4656,0,9352:.:1:1:.:.:1:-0.0111333
chr7	27919667	.	G	A	7956.965	REJECT	NS=2;DP=473;DPB=545.0;AC=2;AN=4;AF=0.5;RO=265;AO=280;PRO=0.0;PAO=0.0;QR=10039;QA=10676;PQR=0.0;PQA=0.0;SRF=145;SRR=120;SAF=137;SAR=143;SRP=8.1317;SAP=3.28949;AB=0.513761;ABP=3.90678;RUN=1;RPP=4.12706;RPPR=3.01849;RPL=146.0;RPR=134.0;EPP=3.04132;EPPR=3.21516;DPRA=0.0;ODDS=434.62;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992857;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9175;Dels=0.0;FS=4.3845;HaplotypeScore=5.7795;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.265;QD=17.935;ReadPosRankSum=1.9155;SOR=0.5155;ClippingRankSum=0.307	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7115:140:76:2854:66:2533:-189.46,0.0,-218.345:65:46:140:73,65:2283,0,2545:1:.:1:.:.:.:0.00182088	0/1:118.7115:402:189:7185:214:8143:-623.266,0.0,-537.089:213:53:402:189,213:7879,0,6803:.:1:1:.:.:.:-0.0111333
chr7	27921286	.	C	T	12558.1	REJECT	NS=2;DP=464;DPB=526.0;AC=2;AN=4;AF=0.5;RO=117;AO=409;PRO=0.0;PAO=0.0;QR=4376;QA=15624;PQR=0.0;PQA=0.0;SRF=53;SRR=64;SAF=199;SAR=210;SRP=5.25601;SAP=3.65272;AB=0.777567;ABP=355.004;RUN=1;RPP=8.11246;RPPR=3.91972;RPL=220.0;RPR=189.0;EPP=3.05808;EPPR=3.47429;DPRA=0.0;ODDS=163.055;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997555;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.168;Dels=0.0;FS=0.345;HaplotypeScore=6.8321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.023;QD=25.555;ReadPosRankSum=0.5805;SOR=0.7405;ClippingRankSum=1.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:64:2370:60:2256:-169.46,0.0,-179.71:60:49:122:61,60:2091,0,2072:1:.:1:.:.:.:0.00182088	0/1:129.501:402:53:2006:349:13368:-1093.44,0.0,-71.5878:349:87:402:53,349:13778,0,1047:.:1:1:.:.:.:-0.0111333
chr7	27921926	.	G	T	287.721	REJECT	NS=2;DP=388;DPB=456.588;AC=2;AN=2;AF=0.0;RO=265;AO=23;PRO=53.6667;PAO=18.6667;QR=9820;QA=343;PQR=1868.0;PQA=622.667;SRF=128;SRR=137;SAF=0;SAR=23;SRP=3.67403;SAP=52.9542;AB=0.0592784;ABP=657.608;RUN=1;RPP=10.6577;RPPR=19.6036;RPL=7.0;RPR=16.0;EPP=10.6577;EPPR=14.2282;DPRA=0.0;ODDS=13.0711;GTI=0;TYPE=snp;CIGAR=1X16M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996226;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:56.7673:104:66:2417:5:70:-11.8433,-41.8528,-427.413:5:5:96:.:.:1:.:.:.:0.00182088	./1:160.002:284:199:7403:18:273:-23.8924,-100.482,-1269.24:18:7:264:.:.:1:.:.:.:-0.0111333
chr7	27921926	.	G	GT	287.721	REJECT	NS=2;DP=388;DPB=456.588;AC=2;AN=4;AF=0.5;RO=265;AO=43;PRO=53.6667;PAO=49.1667;QR=9820;QA=1195;PQR=1868.0;PQA=1718.0;SRF=128;SRR=137;SAF=20;SAR=23;SRP=3.67403;SAP=3.46479;AB=0.110825;ABP=513.441;RUN=1;RPP=7.10075;RPPR=19.6036;RPL=26.0;RPR=17.0;EPP=17.6046;EPPR=14.2282;DPRA=0.0;ODDS=13.0711;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=59.5349;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996226;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56.7673:104:66:2417:13:381:-11.8433,0.0,-204.944:13:14:96:.:.:1:.:.:.:0.00182088	0/1:160.002:284:199:7403:30:814:-23.8924,0.0,-616.169:30:11:264:.:.:1:.:.:.:-0.0111333
chr7	27921926	.	GT	G	287.721	REJECT	NS=2;DP=388;DPB=456.588;AC=2;AN=2;AF=0.0;RO=265;AO=29;PRO=53.6667;PAO=44.5;QR=9820;QA=980;PQR=1868.0;PQA=1548.33;SRF=128;SRR=137;SAF=15;SAR=14;SRP=3.67403;SAP=3.08518;AB=0.0747423;ABP=612.478;RUN=1;RPP=4.88226;RPPR=19.6036;RPL=17.0;RPR=12.0;EPP=9.07545;EPPR=14.2282;DPRA=0.0;ODDS=13.0711;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996226;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:56.7673:104:66:2417:12:352:-11.8433,-3.73834,-228.104:12:13:96:.:.:1:.:.:.:0.00182088	./1:160.002:284:199:7403:17:628:-23.8924,-24.2224,-675.678:17:6:264:.:.:1:.:.:.:-0.0111333
chr7	27922001	.	C	G	6530.625	REJECT	NS=2;DP=393;DPB=461.0;AC=2;AN=4;AF=0.5;RO=218;AO=243;PRO=0.0;PAO=0.0;QR=8057;QA=8984;PQR=0.0;PQA=0.0;SRF=125;SRR=93;SAF=137;SAR=106;SRP=13.2102;SAP=11.5979;AB=0.527115;ABP=5.95427;RUN=1;RPP=5.59283;RPPR=3.0103;RPL=113.0;RPR=130.0;EPP=12.7417;EPPR=6.23763;DPRA=0.0;ODDS=406.754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0412;MQMR=60.0459;PAIRED=1.0;PAIREDR=0.995413;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.573;Dels=0.0;FS=3.3375;HaplotypeScore=9.6564;MLEAC=1;MLEAF=0.5;MQ=60.055;MQRankSum=0.1925;QD=17.71;ReadPosRankSum=1.2295;SOR=0.5745;ClippingRankSum=1.177	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:133:70:2562:65:2372:-176.925,0.0,-194.025:64:48:133:68,64:2142,0,2236:1:.:1:.:.:.:0.00182088	0/1:129.501:325:148:5495:178:6612:-506.486,0.0,-406.067:178:55:325:147,178:6338,0,5116:.:1:1:.:.:.:-0.0111333
chr7	27922780	.	A	G	12872.6	REJECT	NS=2;DP=486;DPB=543.0;AC=2;AN=4;AF=0.5;RO=125;AO=416;PRO=0.0;PAO=0.0;QR=4782;QA=16027;PQR=0.0;PQA=0.0;SRF=47;SRR=78;SAF=184;SAR=232;SRP=19.7046;SAP=15.0369;AB=0.766114;ABP=337.013;RUN=1;RPP=3.09382;RPPR=3.44459;RPL=206.0;RPR=210.0;EPP=3.34437;EPPR=3.44459;DPRA=0.0;ODDS=269.498;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.024;MQMR=60.0;PAIRED=0.997596;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5;Dels=0.0;FS=1.1765;HaplotypeScore=5.8481;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=-0.2165;QD=23.82;ReadPosRankSum=1.4805;SOR=0.56;ClippingRankSum=-0.997	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6415:110:58:2173:54:2099:-158.591,0.0,-165.212:52:47:110:57,51:1632,0,2005:1:.:1:.:.:.:0.00182088	0/1:117.6415:430:67:2609:362:13928:-1136.44,0.0,-118.453:362:84:429:67,362:14302,0,1649:.:1:1:.:.:.:-0.0111333
chr7	27922880	.	A	G	4637.82	PASS	SOMATIC;NS=2;DP=548;DPB=548.0;AC=1;AN=3;AF=0.25;RO=380;AO=167;PRO=0.0;PAO=0.0;QR=14441;QA=6472;PQR=0.0;PQA=0.0;SRF=216;SRR=164;SAF=85;SAR=82;SRP=18.462;SAP=3.12733;AB=0.40048;ABP=38.8839;RUN=1;RPP=4.58364;RPPR=3.03316;RPL=78.0;RPR=89.0;EPP=3.0233;EPPR=3.58174;DPRA=3.18321;ODDS=82.6976;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994012;PAIREDR=0.994737;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.223;Dels=0.0;FS=2.5;HaplotypeScore=3.9545;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.424;QD=14.3;ReadPosRankSum=0.245;SOR=0.539	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:127:131:4966:0:0:0.0,-35.4891,-446.886:0:0:127:123,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:416:249:9475:167:6472:-469.457,0.0,-739.471:166:40:415:242,159:38.0:0.393:2:5979,0,9261:.:1:1:.:.:1:-0.0111333
chr7	27923950	.	T	C	1878.15	PASS	SOMATIC;NS=2;DP=224;DPB=224.0;AC=1;AN=3;AF=0.25;RO=154;AO=70;PRO=0.0;PAO=0.0;QR=5913;QA=2715;PQR=0.0;PQA=0.0;SRF=116;SRR=38;SAF=55;SAR=15;SRP=88.7976;SAP=52.644;AB=0.416667;ABP=13.1438;RUN=1;RPP=9.09042;RPPR=17.4492;RPL=28.0;RPR=42.0;EPP=4.99565;EPPR=30.3088;DPRA=3.0;ODDS=35.9546;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993506;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.549;Dels=0.0;FS=3.255;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.52;QD=14.89;ReadPosRankSum=1.713;SOR=1.048	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.995:56:56:2157:0:0:0.0,-15.1889,-194.321:0:0:56:56,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:168:98:3756:70:2715:-198.748,0.0,-292.421:70:42:168:98,69:38.0:0.413:2:2529,0,3703:.:1:1:.:.:1:-0.0111333
chr7	27925158	.	C	T	14371.3	REJECT	NS=2;DP=527;DPB=600.0;AC=2;AN=4;AF=0.5;RO=135;AO=465;PRO=0.0;PAO=0.0;QR=5067;QA=17865;PQR=0.0;PQA=0.0;SRF=63;SRR=72;SAF=223;SAR=242;SRP=4.31318;SAP=4.69611;AB=0.775;ABP=397.133;RUN=1;RPP=4.35988;RPPR=4.95658;RPL=241.0;RPR=224.0;EPP=5.92895;EPPR=3.41242;DPRA=0.0;ODDS=137.965;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993548;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.469;Dels=0.0;FS=2.913;HaplotypeScore=8.9072;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.327;QD=24.89;ReadPosRankSum=1.1525;SOR=0.7435;ClippingRankSum=-0.154	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:143:80:3016:64:2453:-181.716,0.0,-232.389:64:44:143:78,64:2153,0,2767:1:.:1:.:.:.:0.00182088	0/1:129.501:455:55:2051:401:15412:-1262.61,0.0,-60.9811:400:88:455:55,400:15870,0,905:.:1:1:.:.:.:-0.0111333
chr7	27925318	.	C	T	3443.15	PASS	SOMATIC;NS=2;DP=533;DPB=533.0;AC=1;AN=3;AF=0.25;RO=396;AO=137;PRO=0.0;PAO=0.0;QR=14679;QA=5206;PQR=0.0;PQA=0.0;SRF=183;SRR=213;SAF=57;SAR=80;SRP=7.94546;SAP=11.395;AB=0.317865;ABP=127.197;RUN=1;RPP=7.591;RPPR=13.6264;RPL=60.0;RPR=77.0;EPP=12.9167;EPPR=3.55865;DPRA=4.22549;ODDS=63.6981;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992701;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.357;Dels=0.0;FS=1.885;HaplotypeScore=13.5889;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.121;QD=10.57;ReadPosRankSum=-0.371;SOR=0.912	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.102:100:102:3770:0:0:0.0,-27.2378,-338.959:0:0:100:98,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:117.551:429:294:10909:137:5206:-351.973,0.0,-864.482:136:32:429:282,131:38.0:0.317:2:4562,0,10800:.:1:1:.:.:1:-0.0111333
chr7	27925645	.	C	G	4602.07	PASS	SOMATIC;NS=2;DP=558;DPB=558.0;AC=1;AN=3;AF=0.25;RO=389;AO=169;PRO=0.0;PAO=0.0;QR=14833;QA=6483;PQR=0.0;PQA=0.0;SRF=197;SRR=192;SAF=92;SAR=77;SRP=3.14985;SAP=5.90131;AB=0.393023;ABP=45.753;RUN=1;RPP=6.72365;RPPR=9.84848;RPL=76.0;RPR=93.0;EPP=5.18177;EPPR=25.166;DPRA=3.35938;ODDS=80.772;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994083;PAIREDR=0.997429;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.469;Dels=0.0;FS=1.793;HaplotypeScore=4.9548;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.318;QD=13.78;ReadPosRankSum=1.432;SOR=0.867	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:123:128:4865:0:0:0.0,-34.6529,-437.781:0:0:123:118,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:429:261:9968:169:6483:-466.594,0.0,-780.08:169:39:429:248,164:38.0:0.402:2:5938,0,9836:.:1:1:.:.:1:-0.0111333
chr7	27926199	.	G	A	3723.5	PASS	SOMATIC;NS=2;DP=556;DPB=556.0;AC=1;AN=3;AF=0.25;RO=412;AO=143;PRO=0.0;PAO=0.0;QR=15686;QA=5484;PQR=0.0;PQA=0.0;SRF=207;SRR=205;SAF=72;SAR=71;SRP=3.03138;SAP=3.02549;AB=0.334895;ABP=104.113;RUN=1;RPP=4.24029;RPPR=12.3076;RPL=67.0;RPR=76.0;EPP=3.38993;EPPR=5.11853;DPRA=3.31008;ODDS=81.4432;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986014;PAIREDR=0.992718;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.062;Dels=0.0;FS=0.551;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.328;QD=11.44;ReadPosRankSum=-1.271;SOR=0.651	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.976:125:129:4926:0:0:0.0,-34.9443,-443.282:0:0:125:121,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:122.488:426:283:10760:143:5484:-377.916,0.0,-852.35:143:34:425:273,138:38.0:0.335:2:4900,0,10623:.:1:1:.:.:1:-0.0111333
chr7	27926450	.	C	CA	1659.73	PASS	SOMATIC;DP=182;AC=1;AN=4;AF=0.5;MQ0=0;END=27926450;HOMLEN=3;HOMSEQ=AAA;SVLEN=1;SVTYPE=INS;BaseQRankSum=2.352;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=0.702;QD=9.12;RPA=3,4;RU=A;ReadPosRankSum=0.955;SOR=0.593;STR	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:45,0:45:0.111111,0.0:59.1333,0.0:38.3702,0.0:0.0,0.0:0,0:0,0:4,41,0,0:0:0:45:.:.:.:.:.:.:0:.:0.00182088	0/1:125,56:181:0.2,1.16071:59.968,59.2143:37.9527,38.7115:0.00248963,0.00716846:51,20:48,20:14,111,3,53:56:31:181:99.0:1697,0,3798:.:1:.:1:1:.:-0.0111333
chr7	27926454	.	GAC	AGAT	1222.56	PASS	SOMATIC;NS=2;DP=205;DPB=225.286;AC=1;AN=4;AF=0.25;RO=149;AO=53;PRO=13.0;PAO=10.0;QR=5664;QA=1954;PQR=457.5;PQA=367.5;SRF=10;SRR=139;SAF=3;SAR=50;SRP=245.53;SAP=93.5156;AB=0.325153;ABP=46.2932;RUN=1;RPP=3.05127;RPPR=3.37464;RPL=27.0;RPR=26.0;EPP=3.05127;EPPR=3.14146;DPRA=3.88095;ODDS=29.1126;GTI=0;TYPE=complex;CIGAR=1M1I5M1X;NUMALT=1;MEANALT=4.0;LEN=8;MQM=59.0189;MQMR=59.7383;PAIRED=0.981132;PAIREDR=0.973154;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:126.478:42:42:1620:0:0:0.0,-12.2175,-154.079:0:0:42:.:.:0:.:.:.:0.00182088	0/1:160.002:163:107:4044:53:1954:-137.649,0.0,-325.326:53:33:160:.:.:1:.:.:.:-0.0111333
chr7	27926456	.	C	T	1849.77	PASS	SOMATIC;DP=167;AC=1;AN=3;AF=0.5;MQ0=0;VT=SNP;BaseQRankSum=2.249;Dels=0.0;FS=0.0;HaplotypeScore=8.8858;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.12;QD=11.08;ReadPosRankSum=1.215;SOR=0.585	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:42,0:.:42:0.0:0:0:0:42:.:.:.:.:.:.:.:0:0.00182088	0/1:109,55:38.0:165:0.337:2:55:34:165:99.0:1878,0,4042:.:1:.:.:.:1:-0.0111333
chr7	27926858	.	TA	T	1602.97	PASS	SOMATIC;NS=2;DP=211;DPB=195.0;AC=1;AN=4;AF=0.25;RO=148;AO=63;PRO=7.5;PAO=2.5;QR=5559;QA=2362;PQR=247.0;PQA=59.0;SRF=102;SRR=46;SAF=46;SAR=17;SRP=49.022;SAP=31.9977;AB=0.396226;ABP=17.8828;RUN=1;RPP=4.69922;RPPR=8.87914;RPL=28.0;RPR=35.0;EPP=3.872;EPPR=6.76636;DPRA=3.05769;ODDS=34.0941;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.3175;MQMR=60.0;PAIRED=0.984127;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;END=27926859;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.161;FS=10.29;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.268;QD=14.4;ReadPosRankSum=1.09;SOR=1.419	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:137.203:52:52:1930:0:0:0.0,-14.3809,-177.342:0:0:52:53,0:0.150943,0.0:60.0,0.0:37.1958,0.0:0.0,0.0:0,0:0,0:44,9,0,0:.:.:.:0:.:0:.:0.00182088	0/1:129.501:165:96:3629:63:2362:-168.382,0.0,-295.876:65:40:163:100,65:0.11,0.0461538:60.0,60.6154:38.0405,38.2136:0.0,0.0:51,26:48,27:61,39,48,17:2428,0,3900:.:1:1:1:1:.:-0.0111333
chr7	27927027	.	G	GTATT	848.067	PASS	SOMATIC;NS=2;DP=176;DPB=260.107;AC=1;AN=4;AF=0.25;RO=133;AO=37;PRO=80.5;PAO=79.5;QR=5102;QA=1420;PQR=2958.0;PQA=2920.0;SRF=35;SRR=98;SAF=8;SAR=29;SRP=67.8116;SAP=28.8919;AB=0.289062;ABP=52.4792;RUN=1;RPP=16.2152;RPPR=63.7625;RPL=26.0;RPR=11.0;EPP=5.88603;EPPR=11.6472;DPRA=2.66667;ODDS=29.0825;GTI=0;TYPE=ins;CIGAR=1M4I27M;NUMALT=1;MEANALT=2.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=27927027;HOMLEN=25;HOMSEQ=TATTTATTTATTTATTTATTTATTT;SVLEN=4;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:0:0:45:125.651:48:45:1739:0:0:0.0,-12.2044,-156.57:.:.:0:.:.:.:0.00182088	0/1:152,69:53:30:173:160.002:128:88:3363:37:1420:-93.606,0.0,-271.832:.:.:1:1:.:.:-0.0111333
chr7	27928374	.	T	C	7725.65	REJECT	NS=2;DP=462;DPB=508.0;AC=2;AN=4;AF=0.5;RO=240;AO=267;PRO=0.0;PAO=0.0;QR=9221;QA=10190;PQR=0.0;PQA=0.0;SRF=129;SRR=111;SAF=129;SAR=138;SRP=5.94179;SAP=3.66906;AB=0.525591;ABP=5.8999;RUN=1;RPP=3.01843;RPPR=9.12661;RPL=134.0;RPR=133.0;EPP=7.31258;EPPR=3.58936;DPRA=0.0;ODDS=258.904;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996255;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3125;Dels=0.0;FS=3.266;HaplotypeScore=8.8627;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2355;QD=19.46;ReadPosRankSum=-0.984;SOR=0.668;ClippingRankSum=0.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:39:1530:51:1906:-147.195,0.0,-113.345:51:57:89:37,51:1774,0,1363:1:.:1:.:.:.:0.00182088	0/1:129.501:417:201:7691:216:8284:-632.102,0.0,-578.801:216:52:417:201,216:7984,0,7339:.:1:1:.:.:.:-0.0111333
chr7	27929551	.	C	CA	1750.21	REJECT	NS=2;DP=152;DPB=221.68;AC=2;AN=2;AF=0.0;RO=38;AO=5;PRO=44.75;PAO=40.75;QR=1336;QA=175;PQR=1549.92;PQA=1414.92;SRF=36;SRR=2;SAF=4;SAR=1;SRP=69.0688;SAP=6.91895;AB=0.0328947;ABP=291.073;RUN=1;RPP=3.44459;RPPR=5.06748;RPL=2.0;RPR=3.0;EPP=6.91895;EPPR=3.23888;DPRA=0.0;ODDS=47.7775;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:43:14:479:3:114:-25.6333,-20.5191,-64.9113:3:10:30:.:.:1:.:.:.:0.00182088	./1:160.002:109:24:857:2:61:-160.103,-162.197,-237.5:2:2:84:.:.:1:.:.:.:-0.0111333
chr7	27929551	.	CA	C	1472.97	REJECT	NS=2;DP=149;DPB=221.68;AC=2;AN=4;AF=0.5;RO=38;AO=63;PRO=44.75;PAO=44.75;QR=1336;QA=2193;PQR=1549.92;PQA=1575.92;SRF=36;SRR=2;SAF=49;SAR=14;SRP=69.0688;SAP=45.2334;AB=0.414474;ABP=12.6676;RUN=1;RPP=12.9715;RPPR=5.06748;RPL=23.0;RPR=40.0;EPP=3.32051;EPPR=3.23888;DPRA=0.0;ODDS=47.7775;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=60.3175;MQMR=60.0;PAIRED=0.984127;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.069;FS=2.728;MLEAC=1;MLEAF=0.5;MQ=60.155;MQRankSum=-0.561;QD=5.845;RPA=16,15;RU=A;ReadPosRankSum=0.764;SOR=0.334;STR;ClippingRankSum=0.018	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:44:14:479:10:346:-25.6333,0.0,-60.4041:14:36:37:27,18:237,0,474:1:.:1:.:.:.:0.00182088	0/1:129.501:126:24:857:53:1847:-160.103,0.0,-63.9408:66:64:101:40,79:1233,0,425:.:1:1:.:.:.:-0.0111333
chr7	27929551	.	CAA	C	1750.21	REJECT	NS=2;DP=152;DPB=221.68;AC=2;AN=2;AF=0.0;RO=38;AO=8;PRO=44.75;PAO=37.75;QR=1336;QA=291;PQR=1549.92;PQA=1321.25;SRF=36;SRR=2;SAF=7;SAR=1;SRP=69.0688;SAP=12.7819;AB=0.0526316;ABP=267.244;RUN=1;RPP=7.35324;RPPR=5.06748;RPL=2.0;RPR=6.0;EPP=12.7819;EPPR=3.23888;DPRA=0.0;ODDS=47.7775;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=18.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:43:14:479:3:119:-25.6333,-23.3103,-97.2196:3:10:30:.:.:1:.:.:.:0.00182088	./1:160.002:109:24:857:5:172:-160.103,-153.484,-268.457:5:6:84:.:.:1:.:.:.:-0.0111333
chr7	27931860	.	T	C	17936.85	REJECT	NS=2;DP=475;DPB=551.0;AC=4;AN=4;AF=1.0;RO=0;AO=550;PRO=0.0;PAO=0.0;QR=0;QA=21006;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=293;SAR=257;SRP=0.0;SAP=8.12708;AB=0.0;ABP=0.0;RUN=1;RPP=3.78413;RPPR=0.0;RPL=282.0;RPR=268.0;EPP=6.10564;EPPR=0.0;DPRA=0.0;ODDS=98.4484;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7702;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.605;SOR=0.828	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:149:0:0:151:5738:-516.267,-40.8805,0.0:149:100:149:0,148:5797,443,0:1:.:1:.:.:.:0.00182088	1/1:129.501:399:0:0:399:15268:-1372.73,-107.638,0.0:399:100:399:0,399:17065,1180,0:.:1:1:.:.:.:-0.0111333
chr7	27932193	.	T	C	16752.5	REJECT	NS=2;DP=443;DPB=506.0;AC=4;AN=4;AF=1.0;RO=0;AO=506;PRO=0.0;PAO=0.0;QR=0;QA=19322;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=199;SAR=307;SRP=0.0;SAP=53.0657;AB=0.0;ABP=0.0;RUN=1;RPP=6.37479;RPPR=0.0;RPL=239.0;RPR=267.0;EPP=6.8726;EPPR=0.0;DPRA=0.0;ODDS=82.2362;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994071;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8324;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.475;SOR=1.323	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:123:0:0:125:4741:-426.629,-33.8397,0.0:123:100:123:0,121:5081,363,0:1:.:1:.:.:.:0.00182088	1/1:129.501:381:0:0:381:14581:-1311.4,-103.159,0.0:381:100:381:0,381:16254,1126,0:.:1:1:.:.:.:-0.0111333
chr7	27932307	.	A	C	3850.07	PASS	SOMATIC;NS=2;DP=521;DPB=521.0;AC=1;AN=3;AF=0.25;RO=377;AO=144;PRO=0.0;PAO=0.0;QR=14506;QA=5581;PQR=0.0;PQA=0.0;SRF=213;SRR=164;SAF=81;SAR=63;SRP=16.8398;SAP=7.89611;AB=0.35122;ABP=81.84;RUN=1;RPP=3.0103;RPPR=7.20925;RPL=72.0;RPR=72.0;EPP=3.07062;EPPR=7.20925;DPRA=3.69369;ODDS=70.2522;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9867;PAIRED=0.993056;PAIREDR=0.992042;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.574;Dels=0.0;FS=0.548;HaplotypeScore=8.7034;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0.221;QD=12.2;ReadPosRankSum=0.25;SOR=0.764	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.267:110:111:4259:0:0:0.0,-30.0842,-383.323:0:0:110:110,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:118.6335:410:266:10247:144:5581:-390.908,0.0,-810.508:144:35:410:255,140:38.0:0.358:2:5031,0,10196:.:1:1:.:.:1:-0.0111333
chr7	27932505	.	G	A	6959.700000000001	REJECT	NS=2;DP=432;DPB=509.0;AC=2;AN=4;AF=0.5;RO=251;AO=258;PRO=0.0;PAO=0.0;QR=9651;QA=9831;PQR=0.0;PQA=0.0;SRF=112;SRR=139;SAF=123;SAR=135;SRP=9.31709;SAP=4.22228;AB=0.506876;ABP=3.21934;RUN=1;RPP=3.0103;RPPR=3.01895;RPL=129.0;RPR=129.0;EPP=17.8571;EPPR=16.1689;DPRA=0.0;ODDS=502.642;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988372;PAIREDR=0.992032;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8105;Dels=0.0;FS=2.775;HaplotypeScore=3.9315;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.196;QD=18.115;ReadPosRankSum=-1.546;SOR=0.5785;ClippingRankSum=-0.286	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:150:75:2898:78:2983:-226.959,0.0,-219.292:77:51:150:72,76:2702,0,2644:1:.:1:.:.:.:0.00182088	0/1:129.501:355:176:6753:180:6848:-519.524,0.0,-510.959:179:50:355:176,179:6561,0,6447:.:1:1:.:.:.:-0.0111333
chr7	27933232	.	T	C	2362.3199999999997	REJECT	NS=2;DP=479;DPB=546.0;AC=2;AN=4;AF=0.5;RO=416;AO=130;PRO=0.0;PAO=0.0;QR=15711;QA=4860;PQR=0.0;PQA=0.0;SRF=181;SRR=235;SAF=60;SAR=70;SRP=18.2315;SAP=4.68066;AB=0.238095;ABP=328.318;RUN=1;RPP=4.68066;RPPR=4.0334;RPL=70.0;RPR=60.0;EPP=11.0949;EPPR=11.3621;DPRA=0.0;ODDS=280.616;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9519;PAIRED=0.992308;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.574;Dels=0.0;FS=0.0;HaplotypeScore=4.8771;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.706;QD=9.445;ReadPosRankSum=1.6245;SOR=0.6455;ClippingRankSum=-1.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.058:130:72:2682:61:2247:-166.189,0.0,-205.367:59:45:130:71,57:1924,0,2446:1:.:1:.:.:.:0.00182088	0/1:118.058:412:344:13029:69:2613:-123.604,0.0,-1059.97:69:17:412:343,69:1711,0,13245:.:1:1:.:.:.:-0.0111333
chr7	27934142	.	C	T	6618.31	REJECT	NS=2;DP=422;DPB=479.0;AC=2;AN=4;AF=0.5;RO=236;AO=243;PRO=0.0;PAO=0.0;QR=8876;QA=9078;PQR=0.0;PQA=0.0;SRF=122;SRR=114;SAF=130;SAR=113;SRP=3.59917;SAP=5.59283;AB=0.507307;ABP=3.23243;RUN=1;RPP=12.7417;RPPR=3.15752;RPL=105.0;RPR=138.0;EPP=3.2337;EPPR=8.31016;DPRA=0.0;ODDS=300.303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995885;PAIREDR=0.995763;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.098;Dels=0.0;FS=0.396;HaplotypeScore=9.8072;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.482;QD=18.72;ReadPosRankSum=1.2975;SOR=0.72;ClippingRankSum=1.637	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:49:1797:63:2322:-178.695,0.0,-131.402:62:56:110:47,62:2188,0,1490:1:.:1:.:.:.:0.00182088	0/1:129.501:366:187:7079:180:6756:-508.717,0.0,-537.312:179:49:366:186,179:6465,0,6763:.:1:1:.:.:.:-0.0111333
chr7	27953035	.	A	G	1553.21	REJECT	NS=2;DP=359;DPB=414.0;AC=2;AN=4;AF=0.5;RO=329;AO=84;PRO=0.0;PAO=0.0;QR=12477;QA=3157;PQR=0.0;PQA=0.0;SRF=168;SRR=161;SAF=41;SAR=43;SRP=3.33371;SAP=3.1137;AB=0.202899;ABP=320.423;RUN=1;RPP=11.386;RPPR=3.80893;RPL=51.0;RPR=33.0;EPP=9.62812;EPPR=3.33371;DPRA=0.0;ODDS=109.72;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990881;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3185;Dels=0.0;FS=7.2385;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.151;QD=8.295;ReadPosRankSum=-0.156;SOR=1.2425;ClippingRankSum=-1.411	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.456:104:62:2291:46:1702:-123.951,0.0,-176.983:45:44:104:56,45:1482,0,1825:1:.:1:.:.:.:0.00182088	0/1:120.456:305:267:10186:38:1455:-48.3021,0.0,-833.603:38:12:304:265,38:739,0,10376:.:1:1:.:.:.:-0.0111333
chr7	28031704	.	T	C	2595.0	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=290;AO=102;PRO=0.0;PAO=0.0;QR=11014;QA=3889;PQR=0.0;PQA=0.0;SRF=132;SRR=158;SAF=44;SAR=58;SRP=8.07208;SAP=7.18293;AB=0.33887;ABP=70.8887;RUN=1;RPP=33.7515;RPPR=4.08855;RPL=70.0;RPR=32.0;EPP=3.7767;EPPR=4.92719;DPRA=3.27174;ODDS=57.7529;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990196;PAIREDR=0.989655;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.037;Dels=0.0;FS=1.463;HaplotypeScore=3.8905;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.115;QD=11.29;ReadPosRankSum=-0.557;SOR=0.791	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:91:91:3405:0:0:0.0,-24.6558,-306.541:0:0:90:90,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:129.501:299:199:7609:102:3889:-268.293,0.0,-602.896:101:34:299:192,99:38.0:0.342:2:3404,0,7571:.:1:1:.:.:1:-0.0111333
chr7	28031751	.	T	G	1748.375	REJECT	NS=2;DP=292;DPB=342.0;AC=2;AN=4;AF=0.5;RO=259;AO=82;PRO=0.0;PAO=0.0;QR=9790;QA=3159;PQR=0.0;PQA=0.0;SRF=113;SRR=146;SAF=42;SAR=40;SRP=12.1405;SAP=3.11623;AB=0.239766;ABP=204.183;RUN=1;RPP=5.65844;RPPR=3.2199;RPL=46.0;RPR=36.0;EPP=5.65844;EPPR=6.03695;DPRA=0.0;ODDS=117.711;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.961;Dels=0.0;FS=2.8565;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.099;QD=9.765;ReadPosRankSum=0.747;SOR=0.619;ClippingRankSum=1.138	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:51:1925:48:1848:-139.51,0.0,-146.455:48:48:99:51,48:1666,0,1784:1:.:1:.:.:.:0.00182088	0/1:129.501:243:208:7865:34:1311:-52.3928,0.0,-641.966:34:14:242:208,34:754,0,8076:.:1:1:.:.:.:-0.0111333
chr7	28220228	.	C	T	581.819	REJECT	NS=2;DP=181;DPB=214.0;AC=2;AN=4;AF=0.5;RO=176;AO=38;PRO=0.0;PAO=0.0;QR=6537;QA=1387;PQR=0.0;PQA=0.0;SRF=56;SRR=120;SAF=12;SAR=26;SRP=53.5464;SAP=14.2105;AB=0.17757;ABP=196.251;RUN=1;RPP=30.668;RPPR=163.354;RPL=30.0;RPR=8.0;EPP=3.23888;EPPR=24.7744;DPRA=0.0;ODDS=0.866563;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.943182;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.776;Dels=0.0;FS=2.6225;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9925;QD=7.105;ReadPosRankSum=-0.045;SOR=0.725;ClippingRankSum=-0.913	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.9815:56:34:1248:24:893:-64.7422,0.0,-96.711:23:41:56:32,23:786,0,1079:1:.:1:.:.:.:0.00182088	0/1:52.14376:152:142:5289:14:494:-2.25778,0.0,-433.646:14:9:152:135,14:130,0,5112:.:1:1:.:.:.:-0.0111333
chr7	31500579	.	A	G	2854.35	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=282;AO=110;PRO=0.0;PAO=0.0;QR=10884;QA=4237;PQR=0.0;PQA=0.0;SRF=101;SRR=181;SAF=28;SAR=82;SRP=52.2919;SAP=60.5741;AB=0.358306;ABP=56.5474;RUN=1;RPP=18.487;RPPR=28.914;RPL=69.0;RPR=41.0;EPP=3.32615;EPPR=6.0904;DPRA=3.56977;ODDS=54.6627;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992908;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.617;Dels=0.0;FS=20.674;HaplotypeScore=7.768;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.414;QD=12.36;ReadPosRankSum=1.447;SOR=1.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.163:85:86:3309:0:0:0.0,-23.3137,-297.902:0:0:85:85,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.5815:306:196:7575:110:4237:-298.205,0.0,-598.459:110:36:305:186,105:38.0:0.363:2:3811,0,7535:.:1:1:.:.:1:-0.0111333
chr7	45044595	.	CA	C	2654.27	REJECT	NS=2;DP=220;DPB=296.053;AC=2;AN=3;AF=0.5;RO=29;AO=121;PRO=51.5833;PAO=40.5833;QR=1061;QA=3710;PQR=1779.83;PQA=1407.33;SRF=15;SRR=14;SAF=78;SAR=43;SRP=3.08518;SAP=24.9942;AB=0.510549;ABP=3.23936;RUN=1;RPP=103.957;RPPR=19.8579;RPL=23.0;RPR=98.0;EPP=3.02825;EPPR=4.88226;DPRA=0.0;ODDS=4.4024;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=3;MEANALT=17.5;LEN=1;MQM=59.8099;MQMR=60.0;PAIRED=0.975207;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.436;FS=5.7905;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.422;QD=12.67;RPA=14,13;RU=A;ReadPosRankSum=0.139;SOR=1.3515;STR;ClippingRankSum=-1.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.0851:68:7:258:29:812:-66.5643,-4.55531,-33.1423:33:52:63:11,37:1272,246,313:1:.:1:.:.:.:0.00182088	0/1:120.571:185:22:803:92:2898:-239.652,0.0,-60.1439:116:72:158:35,140:2497,0,272:.:1:1:.:.:.:-0.0111333
chr7	45044595	.	CAA	C	2848.81	REJECT	NS=2;DP=237;DPB=296.053;AC=2;AN=2;AF=0.25;RO=29;AO=36;PRO=51.5833;PAO=36.0833;QR=1061;QA=1223;PQR=1779.83;PQA=1249.83;SRF=15;SRR=14;SAF=25;SAR=11;SRP=3.08518;SAP=14.8328;AB=0.151899;ABP=252.455;RUN=1;RPP=3.25157;RPPR=19.8579;RPL=17.0;RPR=19.0;EPP=18.4519;EPPR=4.88226;DPRA=0.0;ODDS=4.4024;GTI=0;TYPE=del;CIGAR=1M2D16M;NUMALT=3;MEANALT=17.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.99;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=1.701;QD=13.28;ReadPosRankSum=1.386;SOR=1.088;ClippingRankSum=-1.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:59.0851:68:7:258:16:540:-66.5643,-29.3223,-97.1461:19:30:63:11,23:1272,633,1029:1:.:1:.:.:.:0.00182088	./1:142.142:172:22:803:20:683:-239.652,-195.273,-344.873:20:14:142:.:.:.:.:1:.:.:.:-0.0111333
chr7	45044609	.	AGGCT	GGCC	2848.81	REJECT	SOMATIC;NS=2;DP=237;DPB=296.053;AC=1;AN=3;AF=0.0;RO=29;AO=12;PRO=51.5833;PAO=10.75;QR=1061;QA=200;PQR=1779.83;PQA=383.0;SRF=15;SRR=14;SAF=12;SAR=0;SRP=3.08518;SAP=29.068;AB=0.0506329;ABP=418.696;RUN=1;RPP=21.1059;RPPR=19.8579;RPL=11.0;RPR=1.0;EPP=21.1059;EPPR=4.88226;DPRA=0.0;ODDS=4.4024;GTI=0;TYPE=complex;CIGAR=1M1D16M1X;NUMALT=3;MEANALT=17.5;LEN=18;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:19.1702:65:7:258:4:61:-66.5643,-36.5263,-208.884:4:7:56:.:.:.:.:.:.:0.00182088	./1:142.142:172:22:803:8:139:-239.652,-217.978,-911.902:8:6:142:.:.:1:.:.:.:-0.0111333
chr7	46516842	.	T	C	7856.1	REJECT	NS=2;DP=299;DPB=343.0;AC=2;AN=4;AF=0.5;RO=82;AO=260;PRO=0.0;PAO=0.0;QR=3151;QA=9910;PQR=0.0;PQA=0.0;SRF=37;SRR=45;SAF=106;SAR=154;SRP=4.70511;SAP=22.2529;AB=0.758017;ABP=201.349;RUN=1;RPP=39.3908;RPPR=59.0449;RPL=163.0;RPR=97.0;EPP=17.7429;EPPR=3.434;DPRA=0.0;ODDS=153.622;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996154;PAIREDR=0.987805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.989;Dels=0.0;FS=7.4945;HaplotypeScore=5.7954;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.214;QD=25.515;ReadPosRankSum=1.1365;SOR=0.7975;ClippingRankSum=1.616	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.153:86:42:1610:45:1745:-133.506,0.0,-121.358:45:52:86:40,45:1611,0,1407:1:.:1:.:.:.:0.00182088	0/1:123.153:255:40:1541:215:8165:-665.388,0.0,-69.9736:214:84:254:40,214:8294,0,985:.:1:1:.:.:.:-0.0111333
chr7	50436033	.	A	G	8587.76	REJECT	NS=2;DP=316;DPB=362.0;AC=2;AN=4;AF=0.5;RO=81;AO=281;PRO=0.0;PAO=0.0;QR=3056;QA=10769;PQR=0.0;PQA=0.0;SRF=24;SRR=57;SAF=112;SAR=169;SRP=32.2045;SAP=28.1175;AB=0.776243;ABP=242.952;RUN=1;RPP=11.4257;RPPR=14.8328;RPL=157.0;RPR=124.0;EPP=26.3865;EPPR=6.2541;DPRA=0.0;ODDS=105.508;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0015;Dels=0.0;FS=6.3415;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.685;QD=25.4;ReadPosRankSum=1.6975;SOR=0.3185;ClippingRankSum=0.695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:45:1700:47:1803:-137.382,0.0,-128.095:46:51:91:45,46:1559,0,1517:1:.:1:.:.:.:0.00182088	0/1:129.501:270:36:1356:234:8966:-733.367,0.0,-48.8616:234:87:270:36,234:9204,0,709:.:1:1:.:.:.:-0.0111333
chr7	50467767	.	C	A	3196.0	PASS	SOMATIC;NS=2;DP=447;DPB=447.0;AC=1;AN=3;AF=0.25;RO=325;AO=121;PRO=0.0;PAO=0.0;QR=12421;QA=4615;PQR=0.0;PQA=0.0;SRF=134;SRR=191;SAF=56;SAR=65;SRP=24.7183;SAP=4.46393;AB=0.367781;ABP=52.9674;RUN=1;RPP=3.88966;RPPR=14.2418;RPL=64.0;RPR=57.0;EPP=14.2266;EPPR=3.07043;DPRA=2.78814;ODDS=74.5656;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.009;Dels=0.0;FS=6.092;HaplotypeScore=11.7782;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.853;QD=12.71;ReadPosRankSum=-0.718;SOR=0.444	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.365:114:118:4473:0:0:0.0,-31.9574,-402.548:0:0:114:111,0:.:0.0:0:.:.:.:0:.:.:0:0.00182088	0/1:119.1825:329:207:7948:121:4615:-326.248,0.0,-626.057:121:37:328:202,116:38.0:0.362:2:4211,0,7951:.:1:1:.:.:1:-0.0111333
chr7	55214348	.	C	T	9235.41	REJECT	NS=2;DP=352;DPB=403.0;AC=2;AN=4;AF=0.5;RO=100;AO=303;PRO=0.0;PAO=0.0;QR=3903;QA=11572;PQR=0.0;PQA=0.0;SRF=55;SRR=45;SAF=170;SAR=133;SRP=5.18177;SAP=12.8213;AB=0.751861;ABP=225.055;RUN=1;RPP=3.0748;RPPR=4.40004;RPL=153.0;RPR=150.0;EPP=12.8213;EPPR=10.0459;DPRA=0.0;ODDS=223.212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993399;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.8935;Dels=0.0;FS=2.255;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.123;QD=24.55;ReadPosRankSum=0.194;SOR=0.669;ClippingRankSum=-0.268	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.851:101:49:1898:52:2020:-154.449,0.0,-143.455:52:51:101:49,52:1733,0,1739:1:.:1:.:.:.:0.00182088	0/1:122.851:301:51:2005:251:9552:-777.378,0.0,-98.5538:250:83:301:51,250:9726,0,1357:.:1:1:.:.:.:-0.0111333
chr7	55249063	.	G	A	5314.59	REJECT	NS=2;DP=311;DPB=360.0;AC=2;AN=4;AF=0.5;RO=167;AO=193;PRO=0.0;PAO=0.0;QR=6433;QA=7199;PQR=0.0;PQA=0.0;SRF=96;SRR=71;SAF=112;SAR=81;SRP=11.1371;SAP=13.8227;AB=0.536111;ABP=7.08784;RUN=1;RPP=3.29158;RPPR=3.33537;RPL=99.0;RPR=94.0;EPP=8.96216;EPPR=5.20778;DPRA=0.0;ODDS=304.743;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.7125;Dels=0.0;FS=1.322;HaplotypeScore=5.8462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.287;QD=18.125;ReadPosRankSum=0.52;SOR=0.653;ClippingRankSum=-1.723	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0945:96:49:1890:48:1771:-133.139,0.0,-143.847:48:50:96:47,48:1592,0,1714:1:.:1:.:.:.:0.00182088	0/1:120.0945:263:118:4543:145:5428:-417.029,0.0,-337.457:145:55:263:118,145:5233,0,4332:.:1:1:.:.:.:-0.0111333
chr7	55266417	.	T	C	12936.65	REJECT	NS=2;DP=343;DPB=383.0;AC=4;AN=4;AF=1.0;RO=1;AO=381;PRO=0.0;PAO=0.0;QR=27;QA=14559;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=247;SAR=134;SRP=5.18177;SAP=75.786;AB=0.0;ABP=0.0;RUN=1;RPP=19.0199;RPPR=5.18177;RPL=164.0;RPR=217.0;EPP=8.48743;EPPR=5.18177;DPRA=0.0;ODDS=50.0625;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992126;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.64;Dels=0.0;FS=0.0;HaplotypeScore=6.7619;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.501;QD=25.12;ReadPosRankSum=0.762;SOR=1.112;ClippingRankSum=1.086	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:1:27:78:2978:-265.678,-18.9637,0.0:76:99:77:1,74:3175,194,0:1:.:1:.:.:.:0.00182088	1/1:129.501:304:0:0:303:11581:-1041.66,-82.0453,0.0:303:100:303:0,303:12956,900,0:.:1:1:.:.:.:-0.0111333
chr7	55268949	.	A	G	2024.96	REJECT	NS=2;DP=382;DPB=434.0;AC=2;AN=4;AF=0.5;RO=329;AO=105;PRO=0.0;PAO=0.0;QR=12678;QA=3979;PQR=0.0;PQA=0.0;SRF=177;SRR=152;SAF=54;SAR=51;SRP=7.13544;SAP=3.19643;AB=0.241935;ABP=254.061;RUN=1;RPP=3.19643;RPPR=7.13544;RPL=51.0;RPR=54.0;EPP=3.03098;EPPR=14.1053;DPRA=0.0;ODDS=224.206;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.364;Dels=0.0;FS=2.817;HaplotypeScore=8.7628;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6805;QD=10.63;ReadPosRankSum=0.3035;SOR=0.5415;ClippingRankSum=-0.64	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.735:101:53:1994:51:1894:-142.326,0.0,-151.302:50:50:101:49,50:1730,0,1789:1:.:1:.:.:.:0.00182088	0/1:120.735:330:276:10684:54:2085:-98.1572,0.0,-871.545:54:16:330:276,54:1372,0,10936:.:1:1:.:.:.:-0.0111333
chr7	55371250	.	A	G	14633.45	REJECT	NS=2;DP=384;DPB=439.0;AC=4;AN=4;AF=1.0;RO=0;AO=439;PRO=0.0;PAO=0.0;QR=0;QA=16858;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=178;SAR=261;SRP=0.0;SAP=37.0861;AB=0.0;ABP=0.0;RUN=1;RPP=3.41096;RPPR=0.0;RPL=224.0;RPR=215.0;EPP=40.4496;EPPR=0.0;DPRA=0.0;ODDS=71.6732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995444;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=24.945;SOR=1.1365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.4805:106:0:0:108:4088:-367.929,-29.2522,0.0:106:100:106:0,105:4274,315,0:1:.:1:.:.:.:0.00182088	1/1:125.4805:330:0:0:331:12770:-1148.56,-89.652,0.0:330:100:330:0,330:14245,984,0:.:1:1:.:.:.:-0.0111333
chr7	55372073	.	T	C	1434.81	REJECT	NS=2;DP=343;DPB=389.0;AC=2;AN=4;AF=0.5;RO=314;AO=75;PRO=0.0;PAO=0.0;QR=11632;QA=2839;PQR=0.0;PQA=0.0;SRF=160;SRR=154;SAF=33;SAR=42;SRP=3.25926;SAP=5.35549;AB=0.192802;ABP=321.871;RUN=1;RPP=7.90335;RPPR=15.2093;RPL=31.0;RPR=44.0;EPP=9.52472;EPPR=7.68519;DPRA=0.0;ODDS=7.98706;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993631;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0475;Dels=0.0;FS=2.2495;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1745;QD=9.86;ReadPosRankSum=-0.633;SOR=0.9005;ClippingRankSum=0.581	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3225:91:42:1497:50:1892:-145.438,0.0,-109.84:50:55:91:40,50:1774,0,1324:1:.:1:.:.:.:0.00182088	0/1:66.8444:297:272:10135:25:947:-4.82013,0.0,-831.228:25:8:297:272,25:188,0,10346:.:1:1:.:.:.:-0.0111333
chr7	55374032	.	A	G	1622.83	REJECT	NS=2;DP=366;DPB=414.0;AC=2;AN=4;AF=0.5;RO=323;AO=91;PRO=0.0;PAO=0.0;QR=12415;QA=3446;PQR=0.0;PQA=0.0;SRF=157;SRR=166;SAF=50;SAR=41;SRP=3.55485;SAP=4.94315;AB=0.219807;ABP=285.323;RUN=1;RPP=3.60686;RPPR=7.91124;RPL=43.0;RPR=48.0;EPP=5.89764;EPPR=4.14646;DPRA=0.0;ODDS=163.447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989011;PAIREDR=0.996904;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.5175;Dels=0.0;FS=5.184;HaplotypeScore=11.7649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.452;QD=8.7;ReadPosRankSum=-0.416;SOR=0.9375;ClippingRankSum=0.016	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:51:1982:45:1687:-125.841,0.0,-152.397:43:46:94:51,41:1355,0,1906:1:.:1:.:.:.:0.00182088	0/1:129.501:318:272:10433:46:1759:-72.1225,0.0,-852.253:46:14:318:272,46:1023,0,10673:.:1:1:.:.:.:-0.0111333
chr7	55374827	.	C	T	9783.87	REJECT	NS=2;DP=367;DPB=416.0;AC=2;AN=4;AF=0.5;RO=97;AO=318;PRO=0.0;PAO=0.0;QR=3598;QA=12286;PQR=0.0;PQA=0.0;SRF=42;SRR=55;SAF=119;SAR=199;SRP=6.79359;SAP=46.7129;AB=0.764423;ABP=255.653;RUN=1;RPP=7.62639;RPPR=3.56996;RPL=172.0;RPR=146.0;EPP=34.5854;EPPR=11.0918;DPRA=0.0;ODDS=156.551;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993711;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0085;Dels=0.0;FS=4.034;HaplotypeScore=8.7368;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.054;QD=24.51;ReadPosRankSum=-0.039;SOR=1.026;ClippingRankSum=0.145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:50:1878:45:1717:-128.826,0.0,-143.315:45:47:95:50,45:1481,0,1644:1:.:1:.:.:.:0.00182088	0/1:129.501:320:47:1720:273:10569:-863.947,0.0,-68.0513:272:85:319:47,271:10787,0,960:.:1:1:.:.:.:-0.0111333
chr7	57259664	.	T	C	1518.095	REJECT	NS=2;DP=310;DPB=352.0;AC=2;AN=4;AF=0.5;RO=273;AO=79;PRO=0.0;PAO=0.0;QR=10423;QA=3019;PQR=0.0;PQA=0.0;SRF=167;SRR=106;SAF=47;SAR=32;SRP=32.6075;SAP=9.19487;AB=0.224432;ABP=235.185;RUN=1;RPP=26.1269;RPPR=84.1502;RPL=25.0;RPR=54.0;EPP=3.03779;EPPR=3.40005;DPRA=0.0;ODDS=129.598;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987342;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.628;Dels=0.0;FS=5.26;HaplotypeScore=6.7816;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.081;QD=9.83;ReadPosRankSum=0.639;SOR=0.4255;ClippingRankSum=-0.703	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:42:1580:41:1568:-118.685,0.0,-119.758:40:49:81:41,39:1385,0,1508:1:.:1:.:.:.:0.00182088	0/1:129.501:269:231:8843:38:1451:-57.6548,0.0,-722.593:38:14:269:231,38:811,0,9104:.:1:1:.:.:.:-0.0111333
chr7	62496232	.	T	A	8072.115	REJECT	NS=2;DP=375;DPB=423.0;AC=3;AN=4;AF=0.75;RO=135;AO=287;PRO=0.0;PAO=0.0;QR=5198;QA=10963;PQR=0.0;PQA=0.0;SRF=63;SRR=72;SAF=127;SAR=160;SRP=4.31318;SAP=11.2498;AB=0.586626;ABP=24.4544;RUN=1;RPP=4.71267;RPPR=3.02638;RPL=136.0;RPR=151.0;EPP=5.1969;EPPR=27.4756;DPRA=0.0;ODDS=59.6537;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996516;PAIREDR=0.992593;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.248;Dels=0.0;FS=1.511;HaplotypeScore=5.8791;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.7;QD=25.245;ReadPosRankSum=0.404;SOR=0.8595	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:94:3622:-326.05,-25.4813,0.0:93:100:93:0,93:3819,279,0:1:.:1:.:.:.:-0.00407189	0/1:129.501:328:135:5198:193:7341:-571.463,0.0,-378.703:193:59:327:134,193:7268,0,4791:.:1:1:.:.:.:-0.021409
chr7	64506904	.	T	G	13808.25	REJECT	NS=2;DP=365;DPB=419.0;AC=4;AN=4;AF=1.0;RO=1;AO=418;PRO=0.0;PAO=0.0;QR=40;QA=16115;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=190;SAR=228;SRP=5.18177;SAP=10.5118;AB=0.0;ABP=0.0;RUN=1;RPP=7.68572;RPPR=5.18177;RPL=194.0;RPR=224.0;EPP=22.9795;EPPR=5.18177;DPRA=0.0;ODDS=64.2538;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.3086;MQMR=60.0;PAIRED=0.992823;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.577;Dels=0.0;FS=1.6825;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.0;MQ=59.55;MQRankSum=0.509;QD=32.09;ReadPosRankSum=-0.917;SOR=0.728;ClippingRankSum=0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.8545:104:1:40:105:4068:-360.64,-25.1269,0.0:103:99:104:1,101:4157,262,0:1:.:1:.:.:.:-0.00407189	1/1:123.8545:312:0:0:313:12047:-1081.47,-84.7403,0.0:312:100:312:0,311:13289,915,0:.:1:1:.:.:.:-0.021409
chr7	66000932	.	A	G	7767.900000000001	REJECT	NS=2;DP=333;DPB=380.0;AC=3;AN=4;AF=0.75;RO=102;AO=277;PRO=0.0;PAO=0.0;QR=3986;QA=10597;PQR=0.0;PQA=0.0;SRF=43;SRR=59;SAF=129;SAR=148;SRP=8.46027;SAP=5.84027;AB=0.63986;ABP=51.6027;RUN=1;RPP=28.48;RPPR=3.7767;RPL=167.0;RPR=110.0;EPP=40.333;EPPR=4.37279;DPRA=0.0;ODDS=59.6749;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99639;PAIREDR=0.990196;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.296;Dels=0.0;FS=0.4755;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.326;QD=28.605;ReadPosRankSum=0.031;SOR=0.675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:94:3622:-326.064,-25.4905,0.0:94:100:94:0,94:3887,283,0:1:.:1:.:.:.:-0.00407189	0/1:129.501:286:102:3986:183:6975:-550.169,0.0,-281.365:183:64:285:102,183:6926,0,3630:.:1:1:.:.:.:-0.021409
chr7	67501943	.	T	C	13165.599999999999	REJECT	NS=2;DP=349;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=405;PRO=0.0;PAO=0.0;QR=0;QA=15462;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=185;SRP=0.0;SAP=9.57833;AB=0.0;ABP=0.0;RUN=1;RPP=22.961;RPPR=0.0;RPL=172.0;RPR=233.0;EPP=15.8836;EPPR=0.0;DPRA=0.0;ODDS=72.3105;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987654;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7977;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.625;SOR=0.8745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.058:106:0:0:109:4180:-376.207,-29.529,0.0:106:100:106:0,104:4308,312,0:1:.:1:.:.:.:-0.00407189	1/1:128.058:295:0:0:296:11282:-1014.38,-79.7566,0.0:295:100:295:0,294:12535,870,0:.:1:1:.:.:.:-0.021409
chr7	69006274	.	T	C	9836.735	REJECT	NS=2;DP=261;DPB=295.0;AC=4;AN=4;AF=1.0;RO=0;AO=295;PRO=0.0;PAO=0.0;QR=0;QA=11273;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=95;SAR=200;SRP=0.0;SAP=84.1645;AB=0.0;ABP=0.0;RUN=1;RPP=72.2692;RPPR=0.0;RPL=196.0;RPR=99.0;EPP=23.6871;EPPR=0.0;DPRA=0.0;ODDS=46.7469;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99661;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9327;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.735;SOR=1.557	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.2325:65:0:0:68:2542:-228.933,-18.4269,0.0:65:100:65:0,62:2547,187,0:1:.:1:.:.:.:-0.00407189	1/1:124.2325:227:0:0:227:8731:-785.407,-61.4939,0.0:227:100:227:0,227:9772,677,0:.:1:1:.:.:.:-0.021409
chr7	76751658	.	C	A	13081.849999999999	REJECT	NS=2;DP=354;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=409;PRO=0.0;PAO=0.0;QR=0;QA=15287;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=188;SRP=0.0;SAP=8.79204;AB=0.0;ABP=0.0;RUN=1;RPP=4.54467;RPPR=0.0;RPL=196.0;RPR=213.0;EPP=36.1452;EPPR=0.0;DPRA=0.0;ODDS=73.4806;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9853;MQMR=0.0;PAIRED=0.99511;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8656;MLEAC=2;MLEAF=1.0;MQ=59.98;QD=28.905;SOR=0.963	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:111:4062:-365.574,-30.0372,0.0:110:100:110:0,109:4203,326,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:299:0:0:298:11225:-1009.68,-80.6812,0.0:298:100:298:0,298:12522,879,0:.:1:1:.:.:.:-0.021409
chr7	79500341	.	T	A	2247.8	PASS	SOMATIC;NS=2;DP=326;DPB=326.0;AC=1;AN=3;AF=0.25;RO=238;AO=88;PRO=0.0;PAO=0.0;QR=9306;QA=3319;PQR=0.0;PQA=0.0;SRF=159;SRR=79;SAF=65;SAR=23;SRP=61.4028;SAP=46.5385;AB=0.377682;ABP=33.2898;RUN=1;RPP=9.32731;RPPR=33.7029;RPL=36.0;RPR=52.0;EPP=7.84676;EPPR=20.674;DPRA=2.50538;ODDS=59.0267;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9545;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-3.376;Dels=0.0;FS=5.178;HaplotypeScore=12.6313;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.303;QD=12.99;ReadPosRankSum=-0.656;SOR=1.116	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:93:3621:0:0:0.0,-25.209,-325.95:0:0:90:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:232:145:5685:88:3319:-235.457,0.0,-448.248:88:38:232:138,83:38.0:0.371:2:3043,0,5620:.:1:1:.:.:1:-0.021409
chr7	81346685	.	T	C	6236.67	REJECT	NS=2;DP=248;DPB=288.0;AC=2;AN=4;AF=0.5;RO=77;AO=211;PRO=0.0;PAO=0.0;QR=2920;QA=8009;PQR=0.0;PQA=0.0;SRF=18;SRR=59;SAF=57;SAR=154;SRP=50.4161;SAP=99.8415;AB=0.732639;ABP=138.396;RUN=1;RPP=14.2176;RPPR=6.42261;RPL=122.0;RPR=89.0;EPP=20.31;EPPR=5.29458;DPRA=0.0;ODDS=159.379;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7725;Dels=0.0;FS=2.4075;HaplotypeScore=6.8234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1645;QD=24.535;ReadPosRankSum=1.0205;SOR=0.4855;ClippingRankSum=-0.328	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.851:79:40:1477:39:1516:-115.102,0.0,-111.569:39:49:79:40,39:1426,0,1240:1:.:1:.:.:.:-0.00407189	0/1:119.851:209:37:1443:172:6493:-527.506,0.0,-73.2454:172:82:209:37,172:6586,0,1008:.:1:1:.:.:.:-0.021409
chr7	82506874	.	G	A	12457.65	REJECT	NS=2;DP=326;DPB=381.0;AC=4;AN=4;AF=1.0;RO=0;AO=381;PRO=0.0;PAO=0.0;QR=0;QA=14769;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=138;SAR=243;SRP=0.0;SAP=65.8462;AB=0.0;ABP=0.0;RUN=1;RPP=19.0199;RPPR=0.0;RPL=217.0;RPR=164.0;EPP=15.6003;EPPR=0.0;DPRA=0.0;ODDS=72.946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994751;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.86;SOR=1.3805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:110:4231:-380.793,-29.805,0.0:110:100:110:0,110:4647,331,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:271:0:0:271:10538:-947.834,-73.3924,0.0:271:100:271:0,271:11791,807,0:.:1:1:.:.:.:-0.021409
chr7	82506898	.	T	C	4011.12	REJECT	NS=2;DP=258;DPB=301.0;AC=2;AN=4;AF=0.5;RO=156;AO=145;PRO=0.0;PAO=0.0;QR=5984;QA=5555;PQR=0.0;PQA=0.0;SRF=45;SRR=111;SAF=41;SAR=104;SRP=63.6445;SAP=62.4487;AB=0.481728;ABP=3.88322;RUN=1;RPP=17.4019;RPPR=25.2818;RPL=88.0;RPR=57.0;EPP=21.3555;EPPR=12.42;DPRA=0.0;ODDS=227.33;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.695;Dels=0.0;FS=1.047;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.011;QD=16.44;ReadPosRankSum=-0.057;SOR=0.6535;ClippingRankSum=0.53	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7455:86:50:1868:36:1386:-101.481,0.0,-144.864:36:42:86:50,36:1259,0,1711:1:.:1:.:.:.:-0.00407189	0/1:118.7455:215:106:4116:109:4169:-316.787,0.0,-312.413:109:51:215:106,109:4020,0,3981:.:1:1:.:.:.:-0.021409
chr7	85512786	.	CA	C	12189.2	REJECT	NS=2;DP=329;DPB=247.0;AC=4;AN=4;AF=1.0;RO=0;AO=365;PRO=5.5;PAO=5.5;QR=0;QA=13736;PQR=129.0;PQA=129.0;SRF=0;SRR=0;SAF=126;SAR=239;SRP=0.0;SAP=78.9761;AB=0.0;ABP=0.0;RUN=1;RPP=36.4748;RPPR=0.0;RPL=220.0;RPR=145.0;EPP=19.7217;EPPR=0.0;DPRA=0.0;ODDS=53.609;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2192;MQMR=0.0;PAIRED=0.983562;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=85512787;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.315;QD=28.855;SOR=1.3385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:79:2974:-267.786,-21.407,0.0:79:100:79:11,74:3186,237,0:1:.:1:1:.:.:-0.00407189	1/1:129.501:290:0:0:286:10762:-968.003,-77.4031,0.0:286:100:289:53,279:13073,870,0:.:1:1:1:.:.:-0.021409
chr7	86274196	.	T	G	726.853	REJECT	NS=1;DP=58;DPB=58.0;AC=1;AN=4;AF=0.5;RO=29;AO=29;PRO=0.0;PAO=0.0;QR=1063;QA=1098;PQR=0.0;PQA=0.0;SRF=6;SRR=23;SAF=2;SAR=27;SRP=24.6501;SAP=49.8093;AB=0.5;ABP=3.0103;RUN=1;RPP=6.67934;RPPR=9.07545;RPL=18.0;RPR=11.0;EPP=6.67934;EPPR=3.68421;DPRA=0.0;ODDS=167.326;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;BaseQRankSum=1.365;FS=5.97;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.726;QD=17.29;ReadPosRankSum=-1.301;SOR=1.863;ClippingRankSum=-0.455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:57:29:1063:29:1098:-83.1883,0.0,-80.0481:29:50:57:28,29:1014,0,974:1:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.021409
chr7	90012086	.	A	T	1795.82	REJECT	NS=2;DP=317;DPB=367.0;AC=2;AN=4;AF=0.5;RO=279;AO=88;PRO=0.0;PAO=0.0;QR=10797;QA=3386;PQR=0.0;PQA=0.0;SRF=97;SRR=182;SAF=25;SAR=63;SRP=59.2429;SAP=38.6422;AB=0.239782;ABP=218.862;RUN=1;RPP=17.2236;RPPR=24.8729;RPL=56.0;RPR=32.0;EPP=3.89863;EPPR=11.486;DPRA=0.0;ODDS=149.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8465;Dels=0.0;FS=5.651;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0215;QD=10.285;ReadPosRankSum=0.506;SOR=1.235;ClippingRankSum=1.214	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:50:1921:48:1828:-137.993,0.0,-146.356:47:49:96:48,46:1674,0,1671:1:.:1:.:.:.:-0.00407189	0/1:129.501:268:229:8876:40:1558:-67.2591,0.0,-725.518:39:15:268:229,39:900,0,9144:.:1:1:.:.:.:-0.021409
chr7	95668664	.	C	A	10307.4	REJECT	NS=2;DP=385;DPB=442.0;AC=2;AN=4;AF=0.5;RO=107;AO=335;PRO=0.0;PAO=0.0;QR=4131;QA=12882;PQR=0.0;PQA=0.0;SRF=48;SRR=59;SAF=183;SAR=152;SRP=5.46589;SAP=9.23951;AB=0.757919;ABP=258.399;RUN=1;RPP=14.9955;RPPR=4.65412;RPL=146.0;RPR=189.0;EPP=4.10576;EPPR=22.513;DPRA=0.0;ODDS=215.267;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991045;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.118;Dels=0.0;FS=5.428;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1015;QD=25.975;ReadPosRankSum=1.216;SOR=0.5895;ClippingRankSum=-0.1	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.441:111:54:2083:59:2293:-175.751,0.0,-156.835:58:52:111:51,58:2121,0,1656:1:.:1:.:.:.:-0.00407189	0/1:117.441:329:53:2048:276:10589:-863.3,0.0,-95.1097:276:84:329:53,276:10858,0,1323:.:1:1:.:.:.:-0.021409
chr7	95709666	.	C	A	6315.26	REJECT	NS=2;DP=246;DPB=285.0;AC=2;AN=4;AF=0.5;RO=67;AO=217;PRO=0.0;PAO=0.0;QR=2498;QA=8227;PQR=0.0;PQA=0.0;SRF=55;SRR=12;SAF=181;SAR=36;SRP=62.9365;SAP=213.403;AB=0.761404;ABP=172.164;RUN=1;RPP=31.1194;RPPR=5.63551;RPL=82.0;RPR=135.0;EPP=3.50063;EPPR=3.30199;DPRA=0.0;ODDS=140.469;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9724;MQMR=60.0;PAIRED=0.986175;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1785;Dels=0.0;FS=1.052;HaplotypeScore=2.965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0295;QD=26.295;ReadPosRankSum=0.9625;SOR=0.7615;ClippingRankSum=0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:30:1133:46:1680:-130.688,0.0,-81.4401:43:60:73:29,41:1491,0,929:1:.:1:.:.:.:-0.00407189	0/1:129.501:208:37:1365:171:6547:-532.664,0.0,-66.4504:170:82:207:37,170:6683,0,888:.:1:1:.:.:.:-0.021409
chr7	99382096	.	C	T	13355.599999999999	REJECT	NS=2;DP=354;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15677;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=205;SAR=205;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=3.20097;RPPR=0.0;RPL=208.0;RPR=202.0;EPP=22.0769;EPPR=0.0;DPRA=0.0;ODDS=72.9657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997561;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8043;MLEAC=2;MLEAF=1.0;MQ=59.925;QD=30.95;SOR=0.764	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.8795:109:0:0:110:4228:-380.536,-29.8135,0.0:109:100:109:0,109:4449,327,0:1:.:1:.:.:.:-0.00407189	1/1:124.8795:299:0:0:300:11449:-1029.75,-81.2015,0.0:299:100:299:0,299:12698,876,0:.:1:1:.:.:.:-0.021409
chr7	101755060	.	A	G	5266.69	REJECT	NS=2;DP=348;DPB=392.0;AC=2;AN=4;AF=0.5;RO=204;AO=188;PRO=0.0;PAO=0.0;QR=7833;QA=7144;PQR=0.0;PQA=0.0;SRF=77;SRR=127;SAF=78;SAR=110;SRP=29.6215;SAP=14.8379;AB=0.479592;ABP=4.4284;RUN=1;RPP=14.8379;RPPR=5.73528;RPL=110.0;RPR=78.0;EPP=17.9796;EPPR=29.6215;DPRA=0.0;ODDS=254.319;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1615;Dels=0.0;FS=1.591;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.365;QD=16.26;ReadPosRankSum=1.4715;SOR=0.5865;ClippingRankSum=-0.309	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:47:1838:41:1510:-112.085,0.0,-141.631:41:47:88:47,41:1335,0,1710:1:.:1:.:.:.:-0.00407189	0/1:129.501:304:157:5995:147:5634:-424.454,0.0,-456.879:147:48:304:157,147:5400,0,5747:.:1:1:.:.:.:-0.021409
chr7	101758584	.	G	A	8949.77	REJECT	NS=2;DP=239;DPB=273.0;AC=4;AN=4;AF=1.0;RO=0;AO=273;PRO=0.0;PAO=0.0;QR=0;QA=10339;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=100;SAR=173;SRP=0.0;SAP=45.3978;AB=0.0;ABP=0.0;RUN=1;RPP=71.8054;RPPR=0.0;RPL=183.0;RPR=90.0;EPP=15.1085;EPPR=0.0;DPRA=0.0;ODDS=46.6708;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.799;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.865;SOR=1.294	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.0865:67:0:0:68:2517:-226.639,-18.3938,0.0:67:100:67:0,67:2741,201,0:1:.:1:.:.:.:-0.00407189	1/1:125.0865:205:0:0:205:7822:-703.664,-55.5148,0.0:205:100:205:0,205:8789,611,0:.:1:1:.:.:.:-0.021409
chr7	101837149	.	G	A	5456.285	REJECT	NS=2;DP=380;DPB=438.0;AC=2;AN=4;AF=0.5;RO=240;AO=197;PRO=0.0;PAO=0.0;QR=9159;QA=7541;PQR=0.0;PQA=0.0;SRF=130;SRR=110;SAF=109;SAR=88;SRP=6.62942;SAP=7.87131;AB=0.449772;ABP=12.6084;RUN=1;RPP=3.28587;RPPR=5.32654;RPL=96.0;RPR=101.0;EPP=19.7758;EPPR=20.5268;DPRA=0.0;ODDS=308.234;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994924;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.758;Dels=0.0;FS=1.555;HaplotypeScore=10.8558;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.041;QD=15.585;ReadPosRankSum=0.556;SOR=0.7055;ClippingRankSum=-1.438	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:66:2503:49:1842:-134.637,0.0,-194.135:48:43:113:63,48:1629,0,2181:1:.:1:.:.:.:-0.00407189	0/1:129.501:322:174:6656:148:5699:-425.372,0.0,-511.481:148:46:322:174,148:5423,0,6520:.:1:1:.:.:.:-0.021409
chr7	101844851	.	A	G	5629.675	REJECT	NS=2;DP=375;DPB=430.0;AC=2;AN=4;AF=0.5;RO=223;AO=205;PRO=0.0;PAO=0.0;QR=8232;QA=7634;PQR=0.0;PQA=0.0;SRF=104;SRR=119;SAF=98;SAR=107;SRP=5.20125;SAP=3.8683;AB=0.476744;ABP=5.03027;RUN=1;RPP=4.80044;RPPR=5.20125;RPL=109.0;RPR=96.0;EPP=3.02089;EPPR=4.65594;DPRA=0.0;ODDS=292.651;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995516;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.151;Dels=0.0;FS=2.075;HaplotypeScore=10.8205;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.601;QD=15.585;ReadPosRankSum=0.238;SOR=0.581;ClippingRankSum=-0.205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:62:2275:46:1745:-127.796,0.0,-175.522:44:42:106:61,43:1465,0,2032:1:.:1:.:.:.:-0.00407189	0/1:129.501:321:161:5957:159:5889:-443.091,0.0,-449.258:159:50:320:161,159:5642,0,5706:.:1:1:.:.:.:-0.021409
chr7	101892328	.	C	T	1532.63	REJECT	NS=1;DP=133;DPB=133.0;AC=1;AN=4;AF=0.5;RO=75;AO=58;PRO=0.0;PAO=0.0;QR=2838;QA=2200;PQR=0.0;PQA=0.0;SRF=32;SRR=43;SAF=20;SAR=38;SRP=6.51361;SAP=15.1406;AB=0.43609;ABP=7.72876;RUN=1;RPP=10.3484;RPPR=11.3777;RPL=36.0;RPR=22.0;EPP=21.1309;EPPR=47.0478;DPRA=0.0;ODDS=352.902;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.792;FS=4.358;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.393;QD=14.02;ReadPosRankSum=-0.448;SOR=1.102;ClippingRankSum=-1.228	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:132:75:2838:58:2200:-161.973,0.0,-219.343:57:44:132:74,57:1865,0,2517:1:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-14.9485
chr7	101916647	.	A	G	2654.57	REJECT	NS=1;DP=79;DPB=79.0;AC=2;AN=4;AF=1.0;RO=0;AO=79;PRO=0.0;PAO=0.0;QR=0;QA=3064;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=62;SAR=17;SRP=0.0;SAP=58.6715;AB=0.0;ABP=0.0;RUN=1;RPP=17.5509;RPPR=0.0;RPL=28.0;RPR=51.0;EPP=3.03779;EPPR=0.0;DPRA=0.0;ODDS=53.9467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.02;SOR=2.584	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:79:3064:-275.891,-21.4288,0.0:79:100:79:0,79:3383,238,0:1:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-14.9485
chr7	101916798	.	C	A	1427.03	REJECT	NS=1;DP=86;DPB=86.0;AC=1;AN=4;AF=0.5;RO=33;AO=53;PRO=0.0;PAO=0.0;QR=1239;QA=1963;PQR=0.0;PQA=0.0;SRF=14;SRR=19;SAF=21;SAR=32;SRP=4.65535;SAP=7.96781;AB=0.616279;ABP=13.1102;RUN=1;RPP=53.2;RPPR=26.7649;RPL=44.0;RPR=9.0;EPP=3.05127;EPPR=10.9724;DPRA=0.0;ODDS=184.85;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.969697;technology.ILLUMINA=1.0;BaseQRankSum=0.422;FS=0.858;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.773;QD=22.2;ReadPosRankSum=1.429;SOR=0.876;ClippingRankSum=-0.376	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:33:1239:53:1963:-153.429,0.0,-88.2508:53:62:85:32,53:1915,0,1101:1:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:.
chr7	101917521	.	G	A	5687.030000000001	REJECT	NS=2;DP=351;DPB=400.0;AC=2;AN=4;AF=0.5;RO=200;AO=200;PRO=0.0;PAO=0.0;QR=7642;QA=7621;PQR=0.0;PQA=0.0;SRF=103;SRR=97;SAF=104;SAR=96;SRP=3.40116;SAP=3.70517;AB=0.5;ABP=3.0103;RUN=1;RPP=3.18402;RPPR=3.05373;RPL=98.0;RPR=102.0;EPP=14.1282;EPPR=14.1282;DPRA=0.0;ODDS=285.546;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995;PAIREDR=0.995;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.179;Dels=0.0;FS=2.1695;HaplotypeScore=7.865;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1235;QD=17.115;ReadPosRankSum=0.4565;SOR=0.771;ClippingRankSum=-0.436	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.923:95:55:2057:43:1684:-125.048,0.0,-158.59:42:44:95:51,42:1485,0,1825:1:.:1:.:.:.:-0.00407189	0/1:118.923:302:145:5585:157:5937:-452.226,0.0,-420.602:157:52:302:145,157:5702,0,5352:.:1:1:.:.:.:-0.0173504
chr7	101923315	.	T	TC	2574.29	REJECT	NS=1;DP=81;DPB=102.4;AC=2;AN=4;AF=1.0;RO=0;AO=81;PRO=4.0;PAO=5.0;QR=0;QA=2999;PQR=111.5;PQA=144.5;SRF=0;SRR=0;SAF=72;SAR=9;SRP=0.0;SAP=109.412;AB=0.0;ABP=0.0;RUN=1;RPP=3.03711;RPPR=0.0;RPL=40.0;RPR=41.0;EPP=7.5409;EPPR=0.0;DPRA=0.0;ODDS=55.7197;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987654;PAIREDR=0.0;technology.ILLUMINA=1.0;END=101923315;HOMLEN=2;HOMSEQ=CC;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.47;SOR=3.886	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:81:2999:-272.955,-22.1988,0.0:85:100:85:22,109:3043,259,0:1:.:1:1:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0173504
chr7	101926087	.	G	T	2448.38	REJECT	NS=2;DP=303;DPB=347.0;AC=2;AN=4;AF=0.5;RO=209;AO=133;PRO=0.0;PAO=0.0;QR=6270;QA=3896;PQR=0.0;PQA=0.0;SRF=94;SRR=115;SAF=41;SAR=92;SRP=7.59221;SAP=45.4765;AB=0.383285;ABP=44.068;RUN=1;RPP=27.8435;RPPR=121.963;RPL=86.0;RPR=47.0;EPP=33.1987;EPPR=64.6115;DPRA=0.0;ODDS=145.565;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=59.8373;PAIRED=0.992481;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.4655;Dels=0.0;FS=4.0535;HaplotypeScore=31.8739;MLEAC=1;MLEAF=0.5;MQ=59.915;MQRankSum=-0.71;QD=9.1;ReadPosRankSum=-0.208;SOR=0.957;ClippingRankSum=0.804	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.785:80:49:1494:37:976:-66.218,0.0,-112.542:34:43:80:42,32:701,0,1276:1:.:1:.:.:.:-0.00407189	0/1:119.785:260:160:4776:96:2920:-199.138,0.0,-362.119:95:37:256:161,95:2428,0,4361:.:1:1:.:.:.:-0.0173504
chr7	101926095	.	T	C	73.77	PASS	DP=61;AC=1;AN=4;AF=0.5;BaseQRankSum=-3.194;FS=63.595;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.374;QD=1.21;ReadPosRankSum=-3.942;SOR=4.395;ClippingRankSum=-1.314	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,8:61:99.0:102,0,3076:8:13:61:1:.:.:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0173504
chr7	106508978	.	A	G	8898.4	REJECT	NS=2;DP=327;DPB=375.0;AC=2;AN=4;AF=0.5;RO=83;AO=291;PRO=0.0;PAO=0.0;QR=3204;QA=11100;PQR=0.0;PQA=0.0;SRF=41;SRR=42;SAF=141;SAR=150;SRP=3.03646;SAP=3.61473;AB=0.776;ABP=251.131;RUN=1;RPP=3.01776;RPPR=3.03646;RPL=145.0;RPR=146.0;EPP=13.2259;EPPR=4.29225;DPRA=0.0;ODDS=120.808;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.624;Dels=0.0;FS=2.744;HaplotypeScore=2.9572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.023;QD=26.155;ReadPosRankSum=0.3415;SOR=1.019;ClippingRankSum=0.71	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.276:91:46:1768:48:1829:-139.154,0.0,-134.061:45:49:91:46,43:1674,0,3504:1:.:1:.:.:.:-0.00407189	0/1:118.276:280:37:1436:243:9271:-758.06,0.0,-53.3869:242:87:279:37,242:9499,0,788:.:1:1:.:.:.:-0.0173504
chr7	106508987	.	T	C	9111.08	REJECT	NS=2;DP=332;DPB=381.0;AC=2;AN=4;AF=0.5;RO=84;AO=297;PRO=0.0;PAO=0.0;QR=3180;QA=11352;PQR=0.0;PQA=0.0;SRF=40;SRR=44;SAF=149;SAR=148;SRP=3.42391;SAP=3.01761;AB=0.779528;ABP=261.586;RUN=1;RPP=4.24592;RPPR=3.1137;RPL=142.0;RPR=155.0;EPP=7.5799;EPPR=3.1137;DPRA=0.0;ODDS=108.814;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986532;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8;Dels=0.0;FS=2.0365;HaplotypeScore=7.8807;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.042;QD=26.785;ReadPosRankSum=0.016;SOR=0.9645;ClippingRankSum=0.782	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.9665:94:48:1792:49:1760:-132.165,0.0,-135.454:46:49:94:47,44:1739,0,3539:1:.:1:.:.:.:-0.00407189	0/1:117.9665:283:36:1388:248:9592:-785.827,0.0,-47.9286:247:87:283:36,247:9869,0,714:.:1:1:.:.:.:-0.0173504
chr7	106512936	.	C	T	886.678	REJECT	NS=2;DP=183;DPB=209.0;AC=2;AN=4;AF=0.5;RO=160;AO=49;PRO=0.0;PAO=0.0;QR=6189;QA=1878;PQR=0.0;PQA=0.0;SRF=100;SRR=60;SAF=36;SAR=13;SRP=24.725;SAP=26.4533;AB=0.23445;ABP=131.023;RUN=1;RPP=51.2702;RPPR=73.366;RPL=8.0;RPR=41.0;EPP=8.37251;EPPR=6.48466;DPRA=0.0;ODDS=88.0793;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1735;Dels=0.0;FS=4.353;HaplotypeScore=5.8962;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6045;QD=9.425;ReadPosRankSum=-0.129;SOR=1.032;ClippingRankSum=0.597	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:28:1085:24:927:-69.4175,0.0,-83.6486:24:46:52:28,24:809,0,1062:1:.:1:.:.:.:-0.00407189	0/1:129.501:157:132:5104:25:951:-43.0447,0.0,-416.688:25:16:157:132,25:631,0,5209:.:1:1:.:.:.:-0.0173504
chr7	106519943	.	T	C	7610.835	REJECT	NS=2;DP=204;DPB=237.0;AC=4;AN=4;AF=1.0;RO=0;AO=237;PRO=0.0;PAO=0.0;QR=0;QA=9077;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=176;SAR=61;SRP=0.0;SAP=124.182;AB=0.0;ABP=0.0;RUN=1;RPP=104.025;RPPR=0.0;RPL=66.0;RPR=171.0;EPP=3.45925;EPPR=0.0;DPRA=0.0;ODDS=44.2804;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987342;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.74;SOR=2.4875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:64:0:0:64:2459:-221.477,-17.3557,0.0:64:100:64:0,64:2680,192,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:172:0:0:173:6618:-595.415,-46.8561,0.0:172:100:172:0,172:7350,509,0:.:1:1:.:.:.:-0.0173504
chr7	106522592	.	A	G	2102.7	PASS	SOMATIC;NS=2;DP=398;DPB=398.0;AC=1;AN=3;AF=0.25;RO=309;AO=88;PRO=0.0;PAO=0.0;QR=11329;QA=3312;PQR=0.0;PQA=0.0;SRF=175;SRR=134;SAF=57;SAR=31;SRP=14.8234;SAP=19.6912;AB=0.298305;ABP=107.248;RUN=1;RPP=7.84676;RPPR=5.5472;RPL=51.0;RPR=37.0;EPP=9.32731;EPPR=30.9021;DPRA=2.86408;ODDS=64.4941;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996764;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.292;Dels=0.0;FS=7.069;HaplotypeScore=8.7566;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.463;QD=9.56;ReadPosRankSum=1.246;SOR=1.109	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.907:100:102:3760:0:0:0.0,-27.5835,-338.399:0:0:99:97,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:120.9535:295:207:7569:88:3312:-218.142,0.0,-600.988:88:30:295:197,85:37.0:0.304:2:2847,0,7471:.:1:1:.:.:1:-0.0173504
chr7	116212474	.	C	A	5545.95	REJECT	NS=2;DP=369;DPB=419.0;AC=2;AN=4;AF=0.5;RO=224;AO=194;PRO=0.0;PAO=0.0;QR=8483;QA=7496;PQR=0.0;PQA=0.0;SRF=118;SRR=106;SAF=102;SAR=92;SRP=4.40625;SAP=4.12962;AB=0.463007;ABP=7.99069;RUN=1;RPP=6.63688;RPPR=15.5738;RPL=88.0;RPR=106.0;EPP=3.41325;EPPR=6.88793;DPRA=0.0;ODDS=278.123;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994845;PAIREDR=0.986607;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.842;Dels=0.0;FS=3.472;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.284;QD=15.835;ReadPosRankSum=0.9505;SOR=0.9095;ClippingRankSum=0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:56:2124:43:1651:-121.782,0.0,-164.368:42:43:98:56,42:1427,0,1967:1:.:1:.:.:.:-0.00407189	0/1:129.501:319:168:6359:151:5845:-439.355,0.0,-485.555:151:47:319:168,151:5623,0,6097:.:1:1:.:.:.:-0.0173504
chr7	116212511	.	T	C	1972.495	REJECT	NS=2;DP=367;DPB=421.0;AC=2;AN=4;AF=0.5;RO=322;AO=99;PRO=0.0;PAO=0.0;QR=12479;QA=3844;PQR=0.0;PQA=0.0;SRF=162;SRR=160;SAF=57;SAR=42;SRP=3.03727;SAP=7.94546;AB=0.235154;ABP=259.507;RUN=1;RPP=3.20771;RPPR=3.4419;RPL=51.0;RPR=48.0;EPP=4.78696;EPPR=3.1182;DPRA=0.0;ODDS=207.936;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993789;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.449;Dels=0.0;FS=1.083;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0285;QD=9.915;ReadPosRankSum=2.3785;SOR=0.7355;ClippingRankSum=-1.438	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:58:2183:49:1889:-141.033,0.0,-167.491:49:46:106:57,49:1718,0,1987:1:.:1:.:.:.:-0.00407189	0/1:129.501:314:264:10296:50:1955:-90.7668,0.0,-840.977:50:16:314:264,50:1251,0,10593:.:1:1:.:.:.:-0.0173504
chr7	116214871	.	C	CA	1446.39	REJECT	NS=2;DP=273;DPB=356.13;AC=2;AN=3;AF=0.5;RO=57;AO=60;PRO=48.6667;PAO=45.1667;QR=1933;QA=1716;PQR=1681.5;PQA=1552.0;SRF=41;SRR=16;SAF=39;SAR=21;SRP=26.8203;SAP=14.7363;AB=0.21978;ABP=189.208;RUN=1;RPP=10.1038;RPPR=6.09608;RPL=23.0;RPR=37.0;EPP=3.0103;EPPR=3.0484;DPRA=0.0;ODDS=18.9735;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=3;MEANALT=28.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.72;FS=5.158;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=0.192;QD=3.79;RPA=14,15;RU=A;ReadPosRankSum=-1.84;SOR=0.391;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:82.4011:68:7:246:12:353:-51.2914,-22.7607,-42.2435:12:29:42:.:.:.:.:1:.:.:.:-0.00407189	0/1:129.501:232:50:1687:48:1363:-102.237,0.0,-137.791:66:36:178:125,85:1023,0,1514:.:1:1:.:.:.:-0.0173504
chr7	116214871	.	C	CAA	1446.39	REJECT	SOMATIC;NS=2;DP=273;DPB=356.13;AC=1;AN=3;AF=0.0;RO=57;AO=15;PRO=48.6667;PAO=43.1667;QR=1933;QA=387;PQR=1681.5;PQA=1511.0;SRF=41;SRR=16;SAF=11;SAR=4;SRP=26.8203;SAP=10.1038;AB=0.0549451;ABP=472.693;RUN=1;RPP=4.31318;RPPR=6.09608;RPL=9.0;RPR=6.0;EPP=3.15506;EPPR=3.0484;DPRA=0.0;ODDS=18.9735;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=3;MEANALT=28.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:82.4011:68:7:246:2:61:-51.2914,-48.507,-70.5647:2:5:42:.:.:.:.:.:.:-0.00407189	./1:160.002:205:50:1687:13:326:-102.237,-84.8353,-232.257:13:9:147:.:.:1:.:.:.:-0.0173504
chr7	116214871	.	CA	C	1446.39	REJECT	NS=2;DP=273;DPB=356.13;AC=2;AN=2;AF=0.25;RO=57;AO=57;PRO=48.6667;PAO=35.0;QR=1933;QA=1716;PQR=1681.5;PQA=1203.5;SRF=41;SRR=16;SAF=40;SAR=17;SRP=26.8203;SAP=23.1631;AB=0.208791;ABP=204.098;RUN=1;RPP=4.877;RPPR=6.09608;RPL=25.0;RPR=32.0;EPP=7.61992;EPPR=3.0484;DPRA=0.0;ODDS=18.9735;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=3;MEANALT=28.0;LEN=1;MQM=60.1754;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.37;FS=3.927;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.271;QD=2.98;ReadPosRankSum=1.258;SOR=0.201;ClippingRankSum=0.765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.70055:58:7:246:21:648:-51.2914,-8.1001,-97.969:21:46:45:28,21:213,0,396:1:.:1:.:.:.:-0.00407189	./1:160.002:205:50:1687:36:1068:-102.237,-43.7577,-316.112:36:24:147:.:.:.:.:1:.:.:.:-0.0173504
chr7	116312986	.	T	C	6003.765	REJECT	NS=2;DP=360;DPB=411.0;AC=2;AN=4;AF=0.5;RO=201;AO=210;PRO=0.0;PAO=0.0;QR=7687;QA=8089;PQR=0.0;PQA=0.0;SRF=101;SRR=100;SAF=105;SAR=105;SRP=3.0211;SAP=3.0103;AB=0.510949;ABP=3.43825;RUN=1;RPP=6.36057;RPPR=9.76239;RPL=96.0;RPR=114.0;EPP=3.67208;EPPR=4.3175;DPRA=0.0;ODDS=333.731;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990476;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.258;Dels=0.0;FS=4.409;HaplotypeScore=5.8368;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.035;QD=18.325;ReadPosRankSum=0.964;SOR=0.7225;ClippingRankSum=0.633	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:50:1928:52:1983:-150.851,0.0,-145.892:51:51:100:49,50:1800,0,1761:1:.:1:.:.:.:-0.00407189	0/1:129.501:309:151:5759:158:6106:-465.904,0.0,-434.307:158:51:309:151,158:5933,0,5514:.:1:1:.:.:.:-0.0173504
chr7	116314327	.	A	C	5617.5	REJECT	NS=2;DP=355;DPB=405.0;AC=2;AN=4;AF=0.5;RO=204;AO=201;PRO=0.0;PAO=0.0;QR=7733;QA=7595;PQR=0.0;PQA=0.0;SRF=79;SRR=125;SAF=88;SAR=113;SRP=25.534;SAP=9.76239;AB=0.496296;ABP=3.05855;RUN=1;RPP=4.3175;RPPR=3.05288;RPL=106.0;RPR=95.0;EPP=3.10753;EPPR=3.69155;DPRA=0.0;ODDS=290.858;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99005;PAIREDR=0.995098;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8995;Dels=0.0;FS=2.636;HaplotypeScore=2.913;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5165;QD=16.94;ReadPosRankSum=-0.459;SOR=0.5265;ClippingRankSum=1.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5025:96:53:2056:45:1709:-127.268,0.0,-158.514:44:46:96:51,44:1549,0,1854:1:.:1:.:.:.:-0.00407189	0/1:117.5025:306:151:5677:156:5886:-446.32,0.0,-427.545:155:51:306:151,155:5596,0,5370:.:1:1:.:.:.:-0.0173504
chr7	116314405	.	G	A	1571.755	REJECT	NS=2;DP=351;DPB=402.0;AC=2;AN=4;AF=0.5;RO=316;AO=86;PRO=0.0;PAO=0.0;QR=11913;QA=3328;PQR=0.0;PQA=0.0;SRF=156;SRR=160;SAF=46;SAR=40;SRP=3.12025;SAP=3.91929;AB=0.21393;ABP=288.759;RUN=1;RPP=3.1113;RPPR=3.03779;RPL=44.0;RPR=42.0;EPP=3.1113;EPPR=12.9331;DPRA=0.0;ODDS=192.496;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.184;Dels=0.0;FS=3.6695;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0185;QD=8.505;ReadPosRankSum=0.039;SOR=0.9945;ClippingRankSum=0.125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5905:98:61:2353:38:1480:-106.392,0.0,-184.954:37:38:98:61,37:1322,0,2208:1:.:1:.:.:.:-0.00407189	0/1:117.5905:302:255:9560:48:1848:-84.1929,0.0,-777.871:48:16:302:253,48:1174,0,9676:.:1:1:.:.:.:-0.0173504
chr7	116315808	.	C	CT	470.661	REJECT	NS=2;DP=153;DPB=350.224;AC=2;AN=2;AF=0.0;RO=94;AO=8;PRO=208.667;PAO=106.667;QR=3477;QA=198;PQR=7560.5;PQA=3709.5;SRF=29;SRR=65;SAF=2;SAR=6;SRP=32.9489;SAP=7.35324;AB=0.0522876;ABP=269.392;RUN=1;RPP=7.35324;RPPR=5.32038;RPL=6.0;RPR=2.0;EPP=3.0103;EPPR=3.0103;DPRA=0.0;ODDS=46.8758;GTI=0;TYPE=ins;CIGAR=1M1I48M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:45:29:1066:3:68:-21.2651,-22.3111,-171.291:3:8:39:.:.:1:.:.:.:-0.00407189	./1:160.002:108:65:2411:5:130:-31.6479,-38.0381,-523.519:5:6:83:.:.:1:.:.:.:-0.0173504
chr7	116315808	.	CT	C	470.661	REJECT	NS=2;DP=153;DPB=350.224;AC=2;AN=4;AF=0.5;RO=94;AO=20;PRO=208.667;PAO=108.667;QR=3477;QA=659;PQR=7560.5;PQA=3896.0;SRF=29;SRR=65;SAF=8;SAR=12;SRP=32.9489;SAP=4.74748;AB=0.130719;ABP=184.236;RUN=1;RPP=3.44459;RPPR=5.32038;RPL=9.0;RPR=11.0;EPP=13.8677;EPPR=3.0103;DPRA=0.0;ODDS=46.8758;GTI=0;TYPE=del;CIGAR=1M1D47M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.852;FS=1.229;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.008;QD=0.66;ReadPosRankSum=-1.066;SOR=0.397;ClippingRankSum=-0.038	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:63:29:1066:7:224:-21.2651,0.0,-165.59:10:17:60:68,13:103,0,1472:1:.:1:.:.:.:-0.00407189	0/1:160.002:108:65:2411:13:435:-31.6479,0.0,-500.346:13:16:83:.:.:.:.:1:.:.:.:-0.0173504
chr7	116317042	.	G	GT	1968.02	REJECT	NS=2;DP=119;DPB=286.588;AC=2;AN=3;AF=0.25;RO=49;AO=17;PRO=135.833;PAO=102.833;QR=1767;QA=490;PQR=4938.33;PQA=3582.33;SRF=26;SRR=23;SAF=9;SAR=8;SRP=3.40914;SAP=3.13803;AB=0.142857;ABP=134.85;RUN=1;RPP=9.26925;RPPR=19.0083;RPL=5.0;RPR=12.0;EPP=3.13803;EPPR=4.11819;DPRA=0.0;ODDS=23.0096;GTI=0;TYPE=ins;CIGAR=1M1I50M;NUMALT=2;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.785;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-0.737;QD=4.22;RPA=11,12;RU=T;ReadPosRankSum=0.749;SOR=0.631;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:35:14:488:1:15:-110.82,-108.061,-190.235:1:3:31:.:.:.:.:1:.:.:.:-0.00407189	0/1:99.4667:158:35:1279:16:475:-93.9467,0.0,-251.842:40:28:133:136,65:1021,0,2385:.:1:1:.:.:.:-0.0173504
chr7	116317042	.	GT	G	1968.02	REJECT	NS=2;DP=119;DPB=286.588;AC=2;AN=3;AF=0.25;RO=49;AO=31;PRO=135.833;PAO=112.333;QR=1767;QA=1086;PQR=4938.33;PQA=4090.33;SRF=26;SRR=23;SAF=15;SAR=16;SRP=3.40914;SAP=3.08035;AB=0.260504;ABP=62.297;RUN=1;RPP=4.76149;RPPR=19.0083;RPL=13.0;RPR=18.0;EPP=14.8483;EPPR=4.11819;DPRA=0.0;ODDS=23.0096;GTI=0;TYPE=del;CIGAR=1M1D49M;NUMALT=2;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.967742;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.057;FS=4.399;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.407;QD=10.29;ReadPosRankSum=-1.179;SOR=0.875;ClippingRankSum=-1.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:58:14:488:16:579:-110.82,0.0,-79.1527:30:53:56:38,44:994,0,738:1:.:1:.:.:.:-0.00407189	./1:99.9334:84:35:1279:15:507:-93.9467,-11.757,-278.612:15:23:66:.:.:.:.:1:.:.:.:-0.0173504
chr7	116317877	.	G	A	5393.075000000001	REJECT	NS=2;DP=368;DPB=429.0;AC=2;AN=4;AF=0.5;RO=233;AO=196;PRO=0.0;PAO=0.0;QR=8995;QA=7548;PQR=0.0;PQA=0.0;SRF=112;SRR=121;SAF=106;SAR=90;SRP=3.76519;SAP=5.84651;AB=0.456876;ABP=9.93978;RUN=1;RPP=4.60567;RPPR=3.24329;RPL=92.0;RPR=104.0;EPP=5.84651;EPPR=14.4268;DPRA=0.0;ODDS=332.819;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9796;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.995708;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1285;Dels=0.0;FS=3.4525;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=-0.7345;QD=16.005;ReadPosRankSum=-0.4755;SOR=0.784;ClippingRankSum=2.049	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.927:119:69:2649:51:1970:-144.785,0.0,-205.867:51:43:119:68,51:1818,0,2356:1:.:1:.:.:.:-0.00407189	0/1:119.927:308:164:6346:145:5578:-418.012,0.0,-487.095:144:47:308:164,144:5254,0,6175:.:1:1:.:.:.:-0.0173504
chr7	116318023	.	TTC	T	33.0475	REJECT	NS=2;DP=220;DPB=291.368;AC=1;AN=4;AF=0.25;RO=196;AO=15;PRO=78.5;PAO=68.5;QR=7315;QA=534;PQR=2795.0;PQA=2429.0;SRF=104;SRR=92;SAF=12;SAR=3;SRP=4.60567;SAP=14.7363;AB=0.157895;ABP=41.6397;RUN=1;RPP=3.15506;RPPR=3.18756;RPL=8.0;RPR=7.0;EPP=3.15506;EPPR=3.18756;DPRA=0.0;ODDS=7.60898;GTI=0;TYPE=del;CIGAR=1M2D16M;NUMALT=1;MEANALT=4.5;LEN=2;MQM=60.0;MQMR=59.898;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33.0475:38:31:1155:6:205:-7.34287,0.0,-106.434:6:16:37:.:.:1:.:.:.:-0.00407189	0/0:137.391:182:165:6160:9:329:0.0,-16.9168,-543.995:9:5:174:.:.:0:.:.:.:-0.0173504
chr7	116318027	.	CTCTCTCTCTCTCTG	C	853.73	PASS	DP=116;AC=2;AN=4;AF=0.5;END=116318041;HOMLEN=13;HOMSEQ=TCTCTCTCTCTCT;SVLEN=-14;SVTYPE=DEL;BaseQRankSum=2.618;FS=6.869;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=-0.109;QD=7.36;ReadPosRankSum=1.259;SOR=1.043;ClippingRankSum=1.747	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59,41:41:41:100:97:99.0:891,0,3294:1:.:.:1:.:.:-0.00407189	0/1:235,44:44:16:279:.:.:.:.:.:.:1:.:.:-0.0173504
chr7	116318486	.	GT	G	1557.79	REJECT	NS=2;DP=308;DPB=359.647;AC=2;AN=4;AF=0.5;RO=229;AO=69;PRO=64.5;PAO=58.5;QR=8638;QA=2457;PQR=2293.0;PQA=2070.0;SRF=99;SRR=130;SAF=28;SAR=41;SRP=12.1229;SAP=8.32883;AB=0.224026;ABP=206.762;RUN=1;RPP=3.29354;RPPR=9.92298;RPL=33.0;RPR=36.0;EPP=3.29354;EPPR=3.09564;DPRA=0.0;ODDS=93.7573;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.2899;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991266;technology.ILLUMINA=1.0;BaseQRankSum=0.994;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60.79;MQRankSum=0.545;QD=11.02;ReadPosRankSum=-1.782;SOR=0.479;ClippingRankSum=0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.397:80:35:1302:40:1387:-120.024,0.0,-101.791:43:54:79:37,46:1084,0,794:1:.:1:.:.:.:-0.00407189	0/1:135.794:230:194:7336:29:1070:-41.6957,0.0,-635.687:29:13:223:.:.:.:.:1:.:.:.:-0.0173504
chr7	116318765	.	CTTGGGACCAGCA	C	726.338	REJECT	NS=2;DP=355;DPB=351.5;AC=2;AN=4;AF=0.25;RO=282;AO=65;PRO=90.0;PAO=3.0;QR=10666;QA=2150;PQR=3315.5;PQA=109.5;SRF=131;SRR=151;SAF=30;SAR=35;SRP=6.0904;SAP=3.84548;AB=0.413793;ABP=8.62618;RUN=1;RPP=4.64726;RPPR=3.78033;RPL=29.0;RPR=36.0;EPP=5.71629;EPPR=4.98157;DPRA=0.0;ODDS=5.82746;GTI=0;TYPE=del;CIGAR=1M12D1M;NUMALT=1;MEANALT=4.5;LEN=12;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996454;technology.ILLUMINA=1.0;END=116318777;HOMLEN=10;HOMSEQ=TTGGGACCAG;SVLEN=-12;SVTYPE=DEL;BaseQRankSum=1.83;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.325;QD=16.58;ReadPosRankSum=0.06;SOR=0.828;ClippingRankSum=-1.753	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:57,70:48:46:105:129.501:96:50:1873:36:1162:-77.5237,0.0,-188.23:1845,0,2569:1:.:1:1:.:.:-0.00407189	0/1:268,90:59:18:309:25.3211:268:232:8793:29:988:0.0,-1.59134,-943.946:.:.:.:0:1:.:.:-0.0173504
chr7	116319002	.	A	G	2435.625	REJECT	NS=2;DP=400;DPB=462.0;AC=2;AN=4;AF=0.5;RO=348;AO=114;PRO=0.0;PAO=0.0;QR=13420;QA=4406;PQR=0.0;PQA=0.0;SRF=161;SRR=187;SAF=57;SAR=57;SRP=7.22845;SAP=3.0103;AB=0.246753;ABP=260.372;RUN=1;RPP=10.6295;RPPR=7.22845;RPL=47.0;RPR=67.0;EPP=6.74371;EPPR=3.11014;DPRA=0.0;ODDS=184.456;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=0.994253;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4915;Dels=0.0;FS=2.499;HaplotypeScore=9.6581;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1325;QD=10.725;ReadPosRankSum=-0.0345;SOR=0.5725;ClippingRankSum=-0.407	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.153:122:59:2271:64:2486:-190.381,0.0,-171.047:63:52:122:58,63:2255,0,2122:1:.:1:.:.:.:-0.00407189	0/1:118.153:339:289:11149:50:1920:-80.881,0.0,-910.938:50:15:339:289,50:1165,0,11456:.:1:1:.:.:.:-0.0173504
chr7	116319211	.	C	T	1376.27	PASS	DP=199;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.882;Dels=0.0;FS=2.0465;HaplotypeScore=3.8985;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2925;QD=10.365;ReadPosRankSum=0.181;SOR=0.781;ClippingRankSum=-2.716	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56,51:107:99.0:1964,0,4117:51:48:107:1:.:.:.:.:.:-0.00407189	0/1:252,39:291:99.0:845,0,9842:39:13:291:.:1:.:.:.:.:-0.0173504
chr7	116319211	.	CATC	TATT	2032.56	REJECT	NS=2;DP=388;DPB=396.25;AC=2;AN=4;AF=0.5;RO=298;AO=89;PRO=14.0;PAO=4.0;QR=11094;QA=3332;PQR=469.0;PQA=149.0;SRF=143;SRR=155;SAF=46;SAR=43;SRP=4.0596;SAP=3.22989;AB=0.229381;ABP=249.819;RUN=1;RPP=18.2594;RPPR=4.87573;RPL=57.0;RPR=32.0;EPP=7.13366;EPPR=7.93619;DPRA=0.0;ODDS=143.062;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=0.977528;PAIREDR=0.993289;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:104:52:1903:52:1922:-146.17,0.0,-163.738:52:50:104:.:.:1:.:.:.:-0.00407189	0/1:160.002:284:246:9191:37:1410:-64.5676,0.0,-766.907:37:13:283:.:.:1:.:.:.:-0.0173504
chr7	116319214	.	C	T	1375.27	PASS	DP=197;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.1305;Dels=0.0;FS=1.5655;HaplotypeScore=5.8957;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8715;QD=10.5;ReadPosRankSum=0.5285;SOR=0.79;ClippingRankSum=0.215	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55,52:107:99.0:2005,0,4039:52:49:107:1:.:.:.:.:.:-0.00407189	0/1:249,38:287:99.0:802,0,9526:38:13:287:.:1:.:.:.:.:-0.0173504
chr7	116319926	.	A	G	3308.4	PASS	SOMATIC;NS=2;DP=447;DPB=447.0;AC=1;AN=3;AF=0.25;RO=321;AO=125;PRO=0.0;PAO=0.0;QR=12257;QA=4785;PQR=0.0;PQA=0.0;SRF=164;SRR=157;SAF=55;SAR=70;SRP=3.34177;SAP=6.91895;AB=0.362319;ABP=59.8148;RUN=1;RPP=5.11229;RPPR=3.82883;RPL=68.0;RPR=57.0;EPP=8.03074;EPPR=12.2712;DPRA=3.38235;ODDS=64.6221;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.9533;PAIRED=0.992;PAIREDR=0.993769;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.777;Dels=0.0;FS=4.371;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.032;QD=12.56;ReadPosRankSum=-0.13;SOR=0.931	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.152:101:102:3921:0:0:0.0,-27.639,-352.923:0:0:101:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.076:344:219:8336:125:4785:-337.254,0.0,-656.602:125:36:343:210,121:38.0:0.368:2:4350,0,8201:.:1:1:.:.:1:-0.0173504
chr7	116320864	.	C	T	832.817	PASS	SOMATIC;NS=2;DP=123;DPB=123.0;AC=1;AN=3;AF=0.25;RO=89;AO=34;PRO=0.0;PAO=0.0;QR=3346;QA=1295;PQR=0.0;PQA=0.0;SRF=65;SRR=24;SAF=25;SAR=9;SRP=44.0243;SAP=19.3602;AB=0.373626;ABP=15.6335;RUN=1;RPP=7.09778;RPPR=8.49998;RPL=13.0;RPR=21.0;EPP=23.7032;EPPR=48.1232;DPRA=2.84375;ODDS=20.9603;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.267;Dels=0.0;FS=0.0;HaplotypeScore=3.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.441;QD=12.55;ReadPosRankSum=-2.4;SOR=0.661	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:91.0294:32:32:1171:0:0:0.0,-8.67697,-105.646:0:0:32:32,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:91:57:2175:34:1295:-91.9155,0.0,-171.141:34:37:91:57,33:38.0:0.367:2:1170,0,2158:.:1:1:.:.:1:-0.0173504
chr7	116320886	.	C	T	771.223	PASS	SOMATIC;NS=2;DP=133;DPB=133.0;AC=1;AN=3;AF=0.25;RO=100;AO=33;PRO=0.0;PAO=0.0;QR=3744;QA=1275;PQR=0.0;PQA=0.0;SRF=82;SRR=18;SAF=30;SAR=3;SRP=91.9538;SAP=50.9801;AB=0.336735;ABP=25.7;RUN=1;RPP=8.34028;RPPR=4.40004;RPL=12.0;RPR=21.0;EPP=10.9724;EPPR=20.0346;DPRA=2.8;ODDS=22.8502;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.15;Dels=0.0;FS=2.739;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.052;QD=11.49;ReadPosRankSum=0.075;SOR=1.35	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:99.2373:35:35:1321:0:0:0.0,-9.49776,-119.151:0:0:35:35,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:98:65:2423:33:1275:-88.2257,0.0,-191.546:33:34:98:65,32:39.0:0.33:2:1154,0,2385:.:1:1:.:.:1:-0.0173504
chr7	116321039	.	T	C	2239.2	PASS	SOMATIC;NS=2;DP=337;DPB=337.0;AC=1;AN=3;AF=0.25;RO=250;AO=87;PRO=0.0;PAO=0.0;QR=9648;QA=3292;PQR=0.0;PQA=0.0;SRF=145;SRR=105;SAF=50;SAR=37;SRP=16.9077;SAP=7.22845;AB=0.356557;ABP=46.6177;RUN=1;RPP=8.62618;RPPR=3.0103;RPL=36.0;RPR=51.0;EPP=3.63429;EPPR=4.71273;DPRA=2.62366;ODDS=59.0228;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.133;Dels=0.0;FS=0.0;HaplotypeScore=6.7569;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.555;QD=11.88;ReadPosRankSum=1.083;SOR=0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:93:3586:0:0:0.0,-25.2073,-322.804:0:0:90:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:244:157:6062:87:3292:-230.041,0.0,-479.221:87:36:244:152,84:37.0:0.358:2:2926,0,6050:.:1:1:.:.:1:-0.0173504
chr7	116321802	.	A	G	2756.87	PASS	SOMATIC;NS=2;DP=343;DPB=343.0;AC=1;AN=3;AF=0.25;RO=240;AO=103;PRO=0.0;PAO=0.0;QR=9201;QA=3892;PQR=0.0;PQA=0.0;SRF=109;SRR=131;SAF=49;SAR=54;SRP=7.38944;SAP=3.53736;AB=0.407115;ABP=21.9699;RUN=1;RPP=3.53736;RPPR=3.58936;RPL=54.0;RPR=49.0;EPP=9.10307;EPPR=4.78367;DPRA=2.81111;ODDS=57.1375;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.979167;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.735;Dels=0.0;FS=0.999;HaplotypeScore=6.8654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.876;QD=14.11;ReadPosRankSum=-0.313;SOR=0.571	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:87:90:3455:0:0:0.0,-24.3885,-311.022:0:0:87:85,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:252:150:5746:103:3892:-281.59,0.0,-448.355:103:41:252:146,101:37.0:0.41:2:3583,0,5615:.:1:1:.:.:1:-0.0173504
chr7	116321992	.	C	CA	208.996	REJECT	NS=2;DP=344;DPB=407.312;AC=2;AN=3;AF=0.25;RO=258;AO=38;PRO=49.6667;PAO=36.6667;QR=9571;QA=1223;PQR=1709.83;PQA=1260.83;SRF=131;SRR=127;SAF=22;SAR=16;SRP=3.14496;SAP=5.06748;AB=0.110465;ABP=456.394;RUN=1;RPP=6.66752;RPPR=3.04397;RPL=15.0;RPR=23.0;EPP=3.0103;EPPR=4.22228;DPRA=0.0;ODDS=1.78188;GTI=1;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973684;PAIREDR=0.984496;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.618466:86:67:2468:8:258:-1.9882,-0.443311,-216.169:8:10:82:.:.:1:.:.:.:-0.00407189	0/1:160.002:258:191:7103:30:965:-24.785,0.0,-602.258:30:12:241:.:.:1:.:.:.:-0.0173504
chr7	116321992	.	CA	C	208.996	REJECT	NS=2;DP=344;DPB=407.312;AC=2;AN=3;AF=0.25;RO=258;AO=27;PRO=49.6667;PAO=31.6667;QR=9571;QA=985;PQR=1709.83;PQA=1107.33;SRF=131;SRR=127;SAF=12;SAR=15;SRP=3.14496;SAP=3.73412;AB=0.0784884;ABP=533.885;RUN=1;RPP=3.09072;RPPR=3.04397;RPL=13.0;RPR=14.0;EPP=3.73412;EPPR=4.22228;DPRA=0.0;ODDS=1.78188;GTI=1;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.962963;PAIREDR=0.984496;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.618466:86:67:2468:7:266:-1.9882,0.0,-222.279:7:9:82:.:.:1:.:.:.:-0.00407189	./1:160.002:258:191:7103:20:719:-24.785,-23.5263,-671.966:20:8:241:.:.:1:.:.:.:-0.0173504
chr7	116324531	.	C	T	6372.700000000001	REJECT	NS=2;DP=419;DPB=476.0;AC=2;AN=4;AF=0.5;RO=244;AO=231;PRO=0.0;PAO=0.0;QR=9272;QA=8626;PQR=0.0;PQA=0.0;SRF=124;SRR=120;SAF=114;SAR=117;SRP=3.15269;SAP=3.0949;AB=0.485294;ABP=3.90444;RUN=1;RPP=3.0197;RPPR=8.1364;RPL=115.0;RPR=116.0;EPP=3.47092;EPPR=12.1234;DPRA=0.0;ODDS=335.279;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.45;Dels=0.0;FS=3.601;HaplotypeScore=14.7145;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2505;QD=16.49;ReadPosRankSum=0.4455;SOR=0.8965;ClippingRankSum=-0.191	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.209:110:59:2204:54:1963:-146.094,0.0,-167.775:52:47:110:57,51:1705,0,1967:1:.:1:.:.:.:-0.00407189	0/1:121.209:363:185:7068:177:6663:-501.266,0.0,-537.692:177:49:362:185,177:6362,0,6820:.:1:1:.:.:.:-0.0173504
chr7	116325326	.	T	C	6278.07	REJECT	NS=2;DP=402;DPB=460.0;AC=2;AN=4;AF=0.5;RO=235;AO=225;PRO=0.0;PAO=0.0;QR=8819;QA=8603;PQR=0.0;PQA=0.0;SRF=107;SRR=128;SAF=87;SAR=138;SRP=7.08528;SAP=28.1125;AB=0.48913;ABP=3.48236;RUN=1;RPP=4.64132;RPPR=3.46308;RPL=119.0;RPR=106.0;EPP=3.79203;EPPR=3.46308;DPRA=0.0;ODDS=373.412;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991489;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4715;Dels=0.0;FS=4.424;HaplotypeScore=9.6872;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.275;QD=17.305;ReadPosRankSum=1.441;SOR=0.992;ClippingRankSum=-0.784	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:114:58:2171:57:2164:-163.61,0.0,-164.24:56:50:114:57,56:1919,0,1963:1:.:1:.:.:.:-0.00407189	0/1:129.501:344:177:6648:168:6439:-485.713,0.0,-504.547:168:49:344:176,168:6180,0,6363:.:1:1:.:.:.:-0.0173504
chr7	116327430	.	C	G	2160.03	PASS	SOMATIC;NS=2;DP=431;DPB=431.0;AC=1;AN=3;AF=0.25;RO=341;AO=90;PRO=0.0;PAO=0.0;QR=12789;QA=3430;PQR=0.0;PQA=0.0;SRF=162;SRR=179;SAF=36;SAR=54;SRP=4.85064;SAP=10.8276;AB=0.28125;ABP=136.013;RUN=1;RPP=3.39634;RPPR=3.06761;RPL=43.0;RPR=47.0;EPP=3.0103;EPPR=6.99027;DPRA=2.88288;ODDS=70.2519;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.985337;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.183;Dels=0.0;FS=3.474;HaplotypeScore=10.8303;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.321;QD=9.11;ReadPosRankSum=-0.155;SOR=0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:108:111:4213:0:0:0.0,-30.084,-379.205:0:0:108:106,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:317:230:8576:90:3430:-221.924,0.0,-684.74:89:28:317:219,86:38.0:0.286:2:2917,0,8454:.:1:1:.:.:1:-0.0173504
chr7	116327659	.	T	C	1746.05	REJECT	NS=2;DP=360;DPB=410.0;AC=2;AN=4;AF=0.5;RO=318;AO=92;PRO=0.0;PAO=0.0;QR=12318;QA=3522;PQR=0.0;PQA=0.0;SRF=136;SRR=182;SAF=41;SAR=51;SRP=17.4595;SAP=5.3706;AB=0.22439;ABP=273.523;RUN=1;RPP=14.4341;RPPR=3.03761;RPL=57.0;RPR=35.0;EPP=3.0103;EPPR=3.25613;DPRA=0.0;ODDS=145.431;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987421;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.401;Dels=0.0;FS=1.47;HaplotypeScore=5.815;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.025;QD=9.72;ReadPosRankSum=-0.0595;SOR=0.557;ClippingRankSum=0.869	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.027:93:47:1841:49:1860:-141.407,0.0,-139.695:47:51:93:45,46:1531,0,1617:1:.:1:.:.:.:-0.00407189	0/1:123.027:312:271:10477:43:1662:-64.4455,0.0,-857.268:43:14:312:268,43:940,0,10653:.:1:1:.:.:.:-0.0173504
chr7	116328284	.	C	CT	29.5936	REJECT	NS=2;DP=329;DPB=407.952;AC=2;AN=3;AF=0.25;RO=260;AO=26;PRO=71.0;PAO=53.0;QR=9656;QA=808;PQR=2493.33;PQA=1853.33;SRF=128;SRR=132;SAF=8;SAR=18;SRP=3.14393;SAP=11.3621;AB=0.0790274;ABP=509.439;RUN=1;RPP=4.34659;RPPR=4.21296;RPL=11.0;RPR=15.0;EPP=4.34659;EPPR=9.55812;DPRA=0.0;ODDS=0.519661;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=59.9885;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:4.04737:87:66:2443:8:272:-2.78559,-0.795275,-226.66:8:10:82:.:.:1:.:.:.:-0.00407189	0/1:29.1541:242:194:7213:18:536:-6.33758,0.0,-636.12:18:8:227:.:.:1:.:.:.:-0.0173504
chr7	116328284	.	CT	C	29.5936	REJECT	NS=2;DP=329;DPB=407.952;AC=2;AN=3;AF=0.25;RO=260;AO=23;PRO=71.0;PAO=42.0;QR=9656;QA=787;PQR=2493.33;PQA=1460.33;SRF=128;SRR=132;SAF=9;SAR=14;SRP=3.14393;SAP=5.3706;AB=0.0699088;ABP=531.615;RUN=1;RPP=5.3706;RPPR=4.21296;RPL=9.0;RPR=14.0;EPP=3.10471;EPPR=9.55812;DPRA=0.0;ODDS=0.519661;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=8.5;LEN=1;MQM=59.8696;MQMR=59.9885;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:4.04737:87:66:2443:8:305:-2.78559,0.0,-250.879:8:10:82:.:.:1:.:.:.:-0.00407189	./1:29.1541:242:194:7213:15:482:-6.33758,-23.8546,-700.691:15:7:227:.:.:1:.:.:.:-0.0173504
chr7	116329159	.	G	GAAATTTCATGT	787.099	REJECT	NS=2;DP=327;DPB=412.692;AC=2;AN=4;AF=0.5;RO=271;AO=52;PRO=43.5;PAO=43.5;QR=10276;QA=1913;PQR=1469.0;PQA=1469.0;SRF=149;SRR=122;SAF=29;SAR=23;SRP=8.85164;SAP=4.51363;AB=0.159021;ABP=333.24;RUN=1;RPP=9.02361;RPPR=3.01831;RPL=20.0;RPR=32.0;EPP=3.17734;EPPR=4.36447;DPRA=0.0;ODDS=7.37314;GTI=0;TYPE=ins;CIGAR=1M11I12M;NUMALT=1;MEANALT=3.0;LEN=11;MQM=60.0;MQMR=60.0;PAIRED=0.980769;PAIREDR=0.98524;technology.ILLUMINA=1.0;END=116329159;HOMLEN=15;HOMSEQ=AAATTTCATGTAAAT;SVLEN=11;SVTYPE=INS;BaseQRankSum=-0.396;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.108;QD=18.75;ReadPosRankSum=-1.487;SOR=0.68;ClippingRankSum=-0.27	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:43,74:47:56:84:119.172:79:42:1580:31:1112:-80.326,0.0,-122.475:1950,0,2506:1:.:1:1:.:.:-0.00407189	0/1:257,53:37:12:280:32.0239:253:229:8696:21:801:-4.31833,0.0,-714.545:.:.:.:1:1:.:.:-0.0173504
chr7	116329401	.	G	T	1828.7150000000001	REJECT	NS=2;DP=337;DPB=389.0;AC=2;AN=4;AF=0.5;RO=301;AO=88;PRO=0.0;PAO=0.0;QR=11244;QA=3376;PQR=0.0;PQA=0.0;SRF=131;SRR=170;SAF=36;SAR=52;SRP=13.9831;SAP=9.32731;AB=0.226221;ABP=256.269;RUN=1;RPP=5.47788;RPPR=3.19065;RPL=39.0;RPR=49.0;EPP=5.47788;EPPR=3.07523;DPRA=0.0;ODDS=106.168;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.973422;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.088;Dels=0.0;FS=2.754;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.044;QD=10.265;ReadPosRankSum=-0.905;SOR=0.586;ClippingRankSum=-1.385	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1955:96:47:1742:51:1973:-151.044,0.0,-130.259:50:52:96:45,49:1767,0,1519:1:.:1:.:.:.:-0.00407189	0/1:118.1955:288:254:9502:37:1403:-47.4546,0.0,-775.925:37:13:288:248,37:719,0,9409:.:1:1:.:.:.:-0.0173504
chr7	116330878	.	C	T	1669.0549999999998	REJECT	NS=2;DP=366;DPB=418.0;AC=2;AN=4;AF=0.5;RO=326;AO=92;PRO=0.0;PAO=0.0;QR=12671;QA=3540;PQR=0.0;PQA=0.0;SRF=153;SRR=173;SAF=48;SAR=44;SRP=5.67468;SAP=3.38795;AB=0.220096;ABP=287.463;RUN=1;RPP=9.05266;RPPR=23.8991;RPL=38.0;RPR=54.0;EPP=3.38795;EPPR=3.25009;DPRA=0.0;ODDS=227.501;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978261;PAIREDR=0.993865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.173;Dels=0.0;FS=0.932;HaplotypeScore=8.7432;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.016;QD=8.47;ReadPosRankSum=0.045;SOR=0.6485;ClippingRankSum=0.178	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5315:101:63:2436:39:1475:-105.117,0.0,-191.62:39:38:101:62,39:1307,0,2365:1:.:1:.:.:.:-0.00407189	0/1:117.5315:315:263:10235:53:2065:-100.137,0.0,-834.94:53:17:315:262,53:1376,0,10463:.:1:1:.:.:.:-0.0173504
chr7	116331101	.	C	A	2440.8050000000003	REJECT	NS=2;DP=363;DPB=426.0;AC=2;AN=4;AF=0.5;RO=313;AO=113;PRO=0.0;PAO=0.0;QR=11737;QA=4328;PQR=0.0;PQA=0.0;SRF=157;SRR=156;SAF=56;SAR=57;SRP=3.01724;SAP=3.02952;AB=0.265258;ABP=206.904;RUN=1;RPP=11.4848;RPPR=4.57126;RPL=46.0;RPR=67.0;EPP=3.02952;EPPR=8.06782;DPRA=0.0;ODDS=196.927;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.99361;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1935;Dels=0.0;FS=1.755;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0085;QD=10.93;ReadPosRankSum=1.058;SOR=0.772;ClippingRankSum=-0.402	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.601:123:60:2206:64:2456:-187.452,0.0,-164.954:64:52:123:59,64:2234,0,2011:1:.:1:.:.:.:-0.00407189	0/1:120.601:301:253:9531:49:1872:-86.6577,0.0,-775.506:49:16:301:252,49:1212,0,9615:.:1:1:.:.:.:-0.0173504
chr7	116331370	.	C	T	2180.35	PASS	SOMATIC;NS=2;DP=390;DPB=390.0;AC=1;AN=3;AF=0.25;RO=300;AO=90;PRO=0.0;PAO=0.0;QR=11355;QA=3319;PQR=0.0;PQA=0.0;SRF=150;SRR=150;SAF=48;SAR=42;SRP=3.0103;SAP=3.87889;AB=0.32491;ABP=76.7698;RUN=1;RPP=3.87889;RPPR=9.52472;RPL=42.0;RPR=48.0;EPP=5.42305;EPPR=3.27088;DPRA=2.45133;ODDS=71.2631;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.83;PAIRED=0.988889;PAIREDR=0.993333;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.863;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.329;QD=10.19;ReadPosRankSum=-0.467;SOR=0.696	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.893:110:113:4246:0:0:0.0,-30.5232,-381.354:0:0:110:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:121.4465:276:187:7109:90:3319:-223.55,0.0,-564.476:90:33:276:180,88:36.0:0.333:2:2841,0,7070:.:1:1:.:.:1:-0.0173504
chr7	116332197	.	A	G	1699.6	REJECT	NS=2;DP=382;DPB=438.0;AC=2;AN=4;AF=0.5;RO=353;AO=85;PRO=0.0;PAO=0.0;QR=13466;QA=3278;PQR=0.0;PQA=0.0;SRF=168;SRR=185;SAF=50;SAR=35;SRP=4.78808;SAP=8.75832;AB=0.194064;ABP=359.092;RUN=1;RPP=6.10145;RPPR=15.467;RPL=37.0;RPR=48.0;EPP=3.24022;EPPR=3.01645;DPRA=0.0;ODDS=39.1514;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988235;PAIREDR=0.991501;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6965;Dels=0.0;FS=4.6855;HaplotypeScore=3.9238;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.241;QD=9.27;ReadPosRankSum=0.48;SOR=1.0385;ClippingRankSum=0.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:57:2100:54:2094:-158.412,0.0,-158.929:54:49:109:53,54:1921,0,1714:1:.:1:.:.:.:-0.00407189	0/1:129.501:327:296:11366:31:1184:-17.9408,0.0,-933.727:31:9:327:296,31:360,0,11724:.:1:1:.:.:.:-0.0173504
chr7	116332324	.	T	A	1640.13	REJECT	NS=2;DP=356;DPB=408.0;AC=2;AN=4;AF=0.5;RO=328;AO=80;PRO=0.0;PAO=0.0;QR=12571;QA=3116;PQR=0.0;PQA=0.0;SRF=162;SRR=166;SAF=35;SAR=45;SRP=3.11623;SAP=5.72464;AB=0.196078;ABP=330.349;RUN=1;RPP=3.44459;RPPR=3.24863;RPL=38.0;RPR=42.0;EPP=3.98746;EPPR=3.03678;DPRA=0.0;ODDS=17.8612;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.975;PAIREDR=0.990854;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.773;Dels=0.0;FS=6.292;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.477;QD=8.67;ReadPosRankSum=0.419;SOR=1.1325;ClippingRankSum=-0.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:50:1933:54:2104:-161.172,0.0,-145.8:52:51:101:48,50:1711,0,1679:1:.:1:.:.:.:-0.00407189	0/1:88.28515:304:278:10638:26:1012:-8.70294,0.0,-874.512:26:9:304:278,26:236,0,10960:.:1:1:.:.:.:-0.0173504
chr7	116332539	.	C	G	5644.55	REJECT	NS=2;DP=375;DPB=427.0;AC=2;AN=4;AF=0.5;RO=222;AO=205;PRO=0.0;PAO=0.0;QR=8420;QA=7787;PQR=0.0;PQA=0.0;SRF=116;SRR=106;SAF=103;SAR=102;SRP=3.98844;SAP=3.02089;AB=0.480094;ABP=4.47999;RUN=1;RPP=6.07155;RPPR=4.41882;RPL=111.0;RPR=94.0;EPP=3.8683;EPPR=3.63631;DPRA=0.0;ODDS=325.783;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990244;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6645;Dels=0.0;FS=3.2;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.612;QD=17.66;ReadPosRankSum=1.164;SOR=0.998;ClippingRankSum=-1.18	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.273:99:50:1881:51:1951:-148.247,0.0,-141.946:50:51:99:47,50:1825,0,1606:1:.:1:.:.:.:-0.00407189	0/1:124.273:325:172:6539:154:5836:-436.642,0.0,-499.893:154:47:325:170,154:5533,0,6261:.:1:1:.:.:.:-0.0173504
chr7	116333709	.	A	G	3094.0	PASS	SOMATIC;NS=2;DP=439;DPB=439.0;AC=1;AN=3;AF=0.25;RO=320;AO=119;PRO=0.0;PAO=0.0;QR=12203;QA=4533;PQR=0.0;PQA=0.0;SRF=150;SRR=170;SAF=59;SAR=60;SRP=5.72464;SAP=3.02855;AB=0.348974;ABP=70.5679;RUN=1;RPP=3.46649;RPPR=9.11757;RPL=57.0;RPR=62.0;EPP=9.59771;EPPR=7.59754;DPRA=3.47959;ODDS=62.1418;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990625;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.17;Dels=0.0;FS=0.0;HaplotypeScore=7.6865;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.708;QD=11.81;ReadPosRankSum=-0.108;SOR=0.623	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:95:98:3780:0:0:0.0,-26.5619,-340.25:0:0:95:93,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:341:222:8423:119:4533:-315.389,0.0,-665.247:119:35:341:217,114:38.0:0.34:2:4054,0,8373:.:1:1:.:.:1:-0.0173504
chr7	116334058	.	G	A	1919.315	REJECT	NS=2;DP=400;DPB=447.0;AC=2;AN=4;AF=0.5;RO=343;AO=104;PRO=0.0;PAO=0.0;QR=13074;QA=3938;PQR=0.0;PQA=0.0;SRF=188;SRR=155;SAF=56;SAR=48;SRP=9.90457;SAP=4.34659;AB=0.232662;ABP=280.497;RUN=1;RPP=3.0103;RPPR=3.77633;RPL=52.0;RPR=52.0;EPP=11.3621;EPPR=5.29573;DPRA=0.0;ODDS=222.231;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997085;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.885;Dels=0.0;FS=0.898;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.402;QD=10.63;ReadPosRankSum=-0.2225;SOR=0.8115;ClippingRankSum=-0.86	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:45:1715:48:1789:-135.839,0.0,-129.198:47:51:91:44,46:1600,0,1499:1:.:1:.:.:.:-0.00407189	0/1:129.501:353:298:11359:56:2149:-97.435,0.0,-925.773:56:16:353:297,56:1369,0,11585:.:1:1:.:.:.:-0.0173504
chr7	116336013	.	G	A	1083.62	REJECT	NS=2;DP=220;DPB=254.0;AC=2;AN=4;AF=0.5;RO=189;AO=65;PRO=0.0;PAO=0.0;QR=7099;QA=2335;PQR=0.0;PQA=0.0;SRF=40;SRR=149;SAF=17;SAR=48;SRP=139.514;SAP=35.1147;AB=0.255906;ABP=134.461;RUN=1;RPP=7.05258;RPPR=12.6728;RPL=38.0;RPR=27.0;EPP=7.05258;EPPR=3.02179;DPRA=0.0;ODDS=137.061;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.969231;PAIREDR=0.989418;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.2005;Dels=0.0;FS=2.1005;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.072;QD=8.485;ReadPosRankSum=-0.2145;SOR=0.4345;ClippingRankSum=0.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.273:66:36:1325:31:1077:-78.8692,0.0,-101.2:30:45:66:36,29:848,0,1247:1:.:1:.:.:.:-0.00407189	0/1:119.273:186:153:5774:34:1258:-62.5871,0.0,-468.812:34:18:186:152,34:875,0,5837:.:1:1:.:.:.:-0.0173504
chr7	116336880	.	T	C	1529.375	REJECT	NS=2;DP=334;DPB=376.0;AC=2;AN=4;AF=0.5;RO=292;AO=84;PRO=0.0;PAO=0.0;QR=11294;QA=3184;PQR=0.0;PQA=0.0;SRF=142;SRR=150;SAF=41;SAR=43;SRP=3.48624;SAP=3.1137;AB=0.223404;ABP=252.868;RUN=1;RPP=3.1137;RPPR=3.12928;RPL=41.0;RPR=43.0;EPP=3.42391;EPPR=4.91406;DPRA=0.0;ODDS=168.384;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993151;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.519;Dels=0.0;FS=1.923;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.525;QD=9.43;ReadPosRankSum=-0.3425;SOR=0.873;ClippingRankSum=-0.529	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:43:1653:40:1483:-111.018,0.0,-126.346:39:48:82:43,39:1296,0,1566:1:.:1:.:.:.:-0.00407189	0/1:129.501:292:249:9641:44:1701:-73.6273,0.0,-787.801:44:15:292:248,44:1020,0,9880:.:1:1:.:.:.:-0.0173504
chr7	116336947	.	C	T	2416.68	PASS	SOMATIC;NS=2;DP=374;DPB=374.0;AC=1;AN=3;AF=0.25;RO=281;AO=93;PRO=0.0;PAO=0.0;QR=10787;QA=3590;PQR=0.0;PQA=0.0;SRF=145;SRR=136;SAF=46;SAR=47;SRP=3.63624;SAP=3.03365;AB=0.334532;ABP=69.123;RUN=1;RPP=8.26386;RPPR=4.31627;RPL=54.0;RPR=39.0;EPP=5.83555;EPPR=3.01803;DPRA=2.89583;ODDS=60.8225;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989247;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.455;Dels=0.0;FS=0.459;HaplotypeScore=40.9235;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.06;QD=11.38;ReadPosRankSum=-1.247;SOR=0.661	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:158.163:93:96:3596:0:0:0.0,-25.9889,-323.673:0:0:93:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:128.5815:278:185:7191:93:3590:-247.598,0.0,-571.514:93:33:278:177,89:38.0:0.336:2:3193,0,7223:.:1:1:.:.:1:-0.0173504
chr7	116336948	.	G	A	1800.065	REJECT	NS=2;DP=319;DPB=368.0;AC=2;AN=4;AF=0.5;RO=281;AO=86;PRO=0.0;PAO=0.0;QR=10785;QA=3332;PQR=0.0;PQA=0.0;SRF=150;SRR=131;SAF=43;SAR=43;SRP=5.79999;SAP=3.0103;AB=0.233696;ABP=229.693;RUN=1;RPP=3.91929;RPPR=3.94535;RPL=46.0;RPR=40.0;EPP=3.0103;EPPR=3.63624;DPRA=0.0;ODDS=137.816;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996441;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4205;Dels=0.0;FS=6.829;HaplotypeScore=40.9235;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2105;QD=10.14;ReadPosRankSum=1.355;SOR=1.1755;ClippingRankSum=1.491	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.5525:97:50:1853:48:1855:-140.43,0.0,-140.242:48:49:97:48,48:1680,0,1603:1:.:1:.:.:.:-0.00407189	0/1:121.5525:270:231:8932:38:1477:-59.9967,0.0,-730.548:38:14:269:231,38:858,0,9173:.:1:1:.:.:.:-0.0173504
chr7	116337144	.	G	A	2118.1099999999997	REJECT	NS=2;DP=369;DPB=423.0;AC=2;AN=4;AF=0.5;RO=318;AO=105;PRO=0.0;PAO=0.0;QR=12311;QA=3991;PQR=0.0;PQA=0.0;SRF=179;SRR=139;SAF=55;SAR=50;SRP=13.9359;SAP=3.52732;AB=0.248227;ABP=235.912;RUN=1;RPP=3.03098;RPPR=3.03761;RPL=52.0;RPR=53.0;EPP=5.51266;EPPR=3.11956;DPRA=0.0;ODDS=192.141;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990476;PAIREDR=0.981132;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.516;Dels=0.0;FS=0.6565;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.074;QD=10.605;ReadPosRankSum=0.695;SOR=0.58;ClippingRankSum=-0.228	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:51:1975:55:2101:-160.365,0.0,-149.048:54:52:104:49,54:1879,0,1777:1:.:1:.:.:.:-0.00407189	0/1:129.501:316:267:10336:50:1890:-84.1118,0.0,-843.818:50:16:316:266,50:1160,0,10618:.:1:1:.:.:.:-0.0173504
chr7	116337352	.	T	G	1740.7350000000001	REJECT	NS=2;DP=404;DPB=460.0;AC=2;AN=4;AF=0.5;RO=367;AO=93;PRO=0.0;PAO=0.0;QR=14108;QA=3405;PQR=0.0;PQA=0.0;SRF=193;SRR=174;SAF=49;SAR=44;SRP=5.14627;SAP=3.59403;AB=0.202174;ABP=357.413;RUN=1;RPP=8.26386;RPPR=5.61962;RPL=39.0;RPR=54.0;EPP=5.83555;EPPR=4.01024;DPRA=0.0;ODDS=82.8818;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989247;PAIREDR=0.99455;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.151;Dels=0.0;FS=1.893;HaplotypeScore=4.8463;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8645;QD=8.685;ReadPosRankSum=-0.258;SOR=0.625;ClippingRankSum=-0.173	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.662:109:57:2201:53:1934:-144.278,0.0,-168.305:53:48:109:56,53:1756,0,2060:1:.:1:.:.:.:-0.00407189	0/1:123.662:349:310:11907:40:1471:-37.5037,0.0,-976.177:40:11:349:309,40:608,0,12276:.:1:1:.:.:.:-0.0173504
chr7	116337649	.	G	A	3256.44	PASS	SOMATIC;NS=2;DP=423;DPB=423.0;AC=1;AN=3;AF=0.25;RO=300;AO=123;PRO=0.0;PAO=0.0;QR=11245;QA=4640;PQR=0.0;PQA=0.0;SRF=154;SRR=146;SAF=51;SAR=72;SRP=3.47355;SAP=10.7958;AB=0.39172;ABP=34.9877;RUN=1;RPP=9.38348;RPPR=5.9056;RPL=71.0;RPR=52.0;EPP=3.16919;EPPR=12.3911;DPRA=2.88073;ODDS=68.9579;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8967;PAIRED=0.98374;PAIREDR=0.983333;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.56;Dels=0.0;FS=5.444;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.388;QD=13.35;ReadPosRankSum=0.23;SOR=1.006	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.958:107:109:4093:0:0:0.0,-29.522,-368.386:0:0:107:105,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:118.979:312:191:7152:123:4640:-332.377,0.0,-558.272:122:39:312:186,116:38.0:0.378:2:4193,0,6992:.:1:1:.:.:1:-0.0173504
chr7	116364823	.	CA	C	2822.06	PASS	SOMATIC;NS=2;DP=403;DPB=377.0;AC=1;AN=4;AF=0.25;RO=295;AO=108;PRO=15.0;PAO=6.0;QR=11183;QA=4122;PQR=396.5;PQA=73.5;SRF=165;SRR=130;SAF=57;SAR=51;SRP=12.0274;SAP=3.73412;AB=0.363636;ABP=50.9801;RUN=1;RPP=8.15749;RPPR=3.19432;RPL=46.0;RPR=62.0;EPP=12.7417;EPPR=15.384;DPRA=2.80189;ODDS=69.6376;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1852;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986441;technology.ILLUMINA=1.0;MQ0=0;END=116364824;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=1.718;FS=1.996;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.261;QD=13.43;ReadPosRankSum=0.408;SOR=0.57	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:140.342:108:106:4033:0:0:0.0,-29.8173,-375.252:0:0:108:110,0:0.127273,0.0:60.0,0.0:37.9512,0.0:0.000938086,0.0:0,0:0,0:62,48,0,0:.:.:.:0:.:0:.:-0.00407189	0/1:119.671:303:189:7150:108:4122:-288.983,0.0,-578.185:111:36:298:189,111:0.118557,0.036036:60.0,60.4505:38.2253,38.9422:0.000528821,0.000917431:54,24:46,24:107,87,58,53:4107,0,7653:.:1:1:1:1:.:-0.0173504
chr7	116381121	.	G	T	369.183	REJECT	NS=2;DP=74;DPB=168.849;AC=2;AN=2;AF=0.0;RO=18;AO=22;PRO=101.167;PAO=26.1667;QR=608;QA=273;PQR=3599.83;PQA=703.167;SRF=1;SRR=17;SAF=0;SAR=22;SRP=33.8935;SAP=50.7827;AB=0.297297;ABP=29.4201;RUN=1;RPP=3.40511;RPPR=4.9405;RPL=10.0;RPR=12.0;EPP=3.40511;EPPR=7.35324;DPRA=0.0;ODDS=13.0846;GTI=0;TYPE=snp;CIGAR=1X52M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.6578:19:3:100:8:90:-7.18588,-23.9412,-286.412:8:53:15:.:.:1:.:.:.:-0.00407189	./1:135.995:55:15:508:14:183:-35.7264,-64.0284,-669.619:14:36:39:.:.:1:.:.:.:-0.0173504
chr7	116381121	.	GT	G	369.183	REJECT	NS=2;DP=74;DPB=168.849;AC=2;AN=4;AF=0.5;RO=18;AO=9;PRO=101.167;PAO=59.1667;QR=608;QA=234;PQR=3599.83;PQA=1922.83;SRF=1;SRR=17;SAF=2;SAR=7;SRP=33.8935;SAP=9.04217;AB=0.121622;ABP=95.0338;RUN=1;RPP=14.8328;RPPR=4.9405;RPL=8.0;RPR=1.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=13.0846;GTI=0;TYPE=del;CIGAR=1M1D51M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.326;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-1.135;QD=1.03;RPA=16,15;RU=T;ReadPosRankSum=1.256;SOR=0.411;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55.6578:19:3:100:1:15:-7.18588,0.0,-54.2693:1:7:15:.:.:.:.:1:.:.:.:-0.00407189	0/1:117.4975:136:15:508:8:219:-35.7264,0.0,-173.171:25:23:104:126,43:268,0,1760:.:1:1:.:.:.:-0.0173504
chr7	116381121	.	GTT	G	369.183	REJECT	NS=2;DP=74;DPB=168.849;AC=2;AN=2;AF=0.0;RO=18;AO=5;PRO=101.167;PAO=43.5;QR=608;QA=119;PQR=3599.83;PQA=1487.17;SRF=1;SRR=17;SAF=1;SAR=4;SRP=33.8935;SAP=6.91895;AB=0.0675676;ABP=123.204;RUN=1;RPP=3.44459;RPPR=4.9405;RPL=2.0;RPR=3.0;EPP=6.91895;EPPR=7.35324;DPRA=0.0;ODDS=13.0846;GTI=0;TYPE=del;CIGAR=1M2D50M;NUMALT=3;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.6578:19:3:100:3:91:-7.18588,-5.76925,-69.2273:3:20:15:.:.:1:.:.:.:-0.00407189	./1:135.995:55:15:508:2:28:-35.7264,-36.516,-233.216:2:5:39:.:.:1:.:.:.:-0.0173504
chr7	116397572	.	A	G	1639.7849999999999	REJECT	NS=2;DP=351;DPB=399.0;AC=2;AN=4;AF=0.5;RO=318;AO=81;PRO=0.0;PAO=0.0;QR=11996;QA=3116;PQR=0.0;PQA=0.0;SRF=163;SRR=155;SAF=46;SAR=35;SRP=3.44733;SAP=6.2541;AB=0.203008;ABP=308.698;RUN=1;RPP=19.7655;RPPR=9.15598;RPL=28.0;RPR=53.0;EPP=3.03711;EPPR=6.94353;DPRA=0.0;ODDS=94.5103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.975309;PAIREDR=0.993711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.6635;Dels=0.0;FS=1.1625;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3755;QD=9.59;ReadPosRankSum=0.5375;SOR=0.8515;ClippingRankSum=0.359	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:50:1869:46:1751:-131.611,0.0,-142.243:46:48:95:48,46:1659,0,1646:1:.:1:.:.:.:-0.00407189	0/1:129.501:303:268:10127:35:1365:-40.7365,0.0,-828.849:35:12:303:268,35:638,0,10387:.:1:1:.:.:.:-0.0173504
chr7	116416010	.	G	T	7900.83	REJECT	NS=2;DP=333;DPB=387.0;AC=3;AN=4;AF=0.75;RO=103;AO=284;PRO=0.0;PAO=0.0;QR=3958;QA=10916;PQR=0.0;PQA=0.0;SRF=57;SRR=46;SAF=166;SAR=118;SRP=5.56125;SAP=20.6268;AB=0.632143;ABP=45.4781;RUN=1;RPP=3.13264;RPPR=5.56125;RPL=140.0;RPR=144.0;EPP=4.11133;EPPR=3.20004;DPRA=0.0;ODDS=67.6924;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989437;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.105;Dels=0.0;FS=0.749;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.471;QD=26.485;ReadPosRankSum=0.381;SOR=0.959	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:107:4062:-365.576,-28.9724,0.0:105:100:105:0,103:4164,309,0:1:.:1:.:.:.:-0.00407189	0/1:129.501:279:103:3958:177:6854:-540.649,0.0,-280.17:177:63:279:102,177:6845,0,3550:.:1:1:.:.:.:-0.0173504
chr7	116416123	.	G	GT	105.719	REJECT	NS=2;DP=335;DPB=384.882;AC=2;AN=3;AF=0.25;RO=264;AO=30;PRO=45.8333;PAO=36.8333;QR=9716;QA=1039;PQR=1615.83;PQA=1287.83;SRF=128;SRR=136;SAF=20;SAR=10;SRP=3.53672;SAP=10.2485;AB=0.1;ABP=350.446;RUN=1;RPP=5.61607;RPPR=36.701;RPL=12.0;RPR=18.0;EPP=3.29983;EPPR=4.19474;DPRA=0.0;ODDS=10.6201;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996212;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:45.8102:85:67:2406:5:172:0.0,-4.18786,-207.604:5:6:77:.:.:1:.:.:.:-0.00407189	0/1:105.719:250:197:7310:25:867:-15.9638,0.0,-618.32:25:11:236:.:.:1:.:.:.:-0.0173504
chr7	116416123	.	GT	G	105.719	REJECT	NS=2;DP=335;DPB=384.882;AC=2;AN=2;AF=0.0;RO=264;AO=19;PRO=45.8333;PAO=34.3333;QR=9716;QA=663;PQR=1615.83;PQA=1188.33;SRF=128;SRR=136;SAF=11;SAR=8;SRP=3.53672;SAP=4.03889;AB=0.056;ABP=431.086;RUN=1;RPP=4.03889;RPPR=36.701;RPL=11.0;RPR=8.0;EPP=3.12459;EPPR=4.19474;DPRA=0.0;ODDS=10.6201;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=58.9474;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996212;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:45.8102:85:67:2406:5:177:0.0,-4.29516,-213.82:5:6:77:.:.:1:.:.:.:-0.00407189	./1:105.719:250:197:7310:14:486:-15.9638,-31.675,-691.176:14:6:236:.:.:1:.:.:.:-0.0173504
chr7	116416327	.	C	T	1597.9650000000001	REJECT	NS=2;DP=379;DPB=427.0;AC=2;AN=4;AF=0.5;RO=336;AO=90;PRO=0.0;PAO=0.0;QR=12602;QA=3345;PQR=0.0;PQA=0.0;SRF=153;SRR=183;SAF=52;SAR=38;SRP=8.82674;SAP=7.73928;AB=0.210773;ABP=313.266;RUN=1;RPP=9.18693;RPPR=7.3791;RPL=37.0;RPR=53.0;EPP=6.48466;EPPR=3.1137;DPRA=0.0;ODDS=154.989;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994048;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.286;Dels=0.0;FS=7.981;HaplotypeScore=10.6258;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.243;QD=9.135;ReadPosRankSum=0.773;SOR=0.97;ClippingRankSum=-0.305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:51:1931:44:1584:-116.863,0.0,-148.114:43:46:93:49,43:1437,0,1721:1:.:1:.:.:.:-0.00407189	0/1:129.501:332:285:10671:46:1761:-68.8112,0.0,-870.193:46:14:331:285,46:1011,0,10874:.:1:1:.:.:.:-0.0173504
chr7	116416423	.	G	A	2677.07	PASS	SOMATIC;NS=2;DP=429;DPB=429.0;AC=1;AN=3;AF=0.25;RO=322;AO=106;PRO=0.0;PAO=0.0;QR=12030;QA=4006;PQR=0.0;PQA=0.0;SRF=174;SRR=148;SAF=66;SAR=40;SRP=7.56904;SAP=16.8586;AB=0.334385;ABP=78.5323;RUN=1;RPP=3.74778;RPPR=11.7501;RPL=56.0;RPR=50.0;EPP=7.02548;EPPR=3.1182;DPRA=2.83036;ODDS=70.7773;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993789;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.776;Dels=0.0;FS=10.315;HaplotypeScore=5.8323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.391;QD=11.06;ReadPosRankSum=-0.23;SOR=1.206	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.35:107:112:4149:0:0:0.0,-30.3122,-373.407:0:0:107:103,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.175:316:210:7881:106:4006:-274.775,0.0,-623.347:106:34:315:201,104:37.0:0.347:2:3522,0,7796:.:1:1:.:.:1:-0.0173504
chr7	116417848	.	G	C	5084.52	REJECT	NS=2;DP=390;DPB=442.0;AC=2;AN=4;AF=0.5;RO=243;AO=196;PRO=0.0;PAO=0.0;QR=8940;QA=7174;PQR=0.0;PQA=0.0;SRF=117;SRR=126;SAF=96;SAR=100;SRP=3.73412;SAP=3.18756;AB=0.443439;ABP=15.2924;RUN=1;RPP=5.18177;RPPR=4.5205;RPL=105.0;RPR=91.0;EPP=10.4997;EPPR=5.59283;DPRA=0.0;ODDS=294.766;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.995885;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1285;Dels=0.0;FS=0.2045;HaplotypeScore=7.8518;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.197;QD=14.45;ReadPosRankSum=0.282;SOR=0.6655;ClippingRankSum=-0.187	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7135:101:56:2060:46:1734:-128.469,0.0,-157.798:45:45:101:55,45:1480,0,1808:1:.:1:.:.:.:-0.00407189	0/1:121.7135:339:187:6880:150:5440:-398.174,0.0,-527.666:150:45:337:187,150:5001,0,6576:.:1:1:.:.:.:-0.0173504
chr7	116435768	.	C	T	2251.12	PASS	SOMATIC;NS=2;DP=377;DPB=377.0;AC=1;AN=3;AF=0.25;RO=289;AO=88;PRO=0.0;PAO=0.0;QR=11016;QA=3415;PQR=0.0;PQA=0.0;SRF=167;SRR=122;SAF=51;SAR=37;SRP=18.2256;SAP=7.84676;AB=0.315412;ABP=85.5807;RUN=1;RPP=4.58955;RPPR=3.37847;RPL=40.0;RPR=48.0;EPP=11.0053;EPPR=9.32936;DPRA=2.84694;ODDS=62.0583;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99654;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.424;Dels=0.0;FS=0.999;HaplotypeScore=4.888;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.556;QD=10.7;ReadPosRankSum=1.933;SOR=0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.673:95:98:3709:0:0:0.0,-26.5256,-333.821:0:0:95:93,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.3365:279:191:7307:88:3415:-231.634,0.0,-581.666:88:32:279:183,87:38.0:0.33:2:3013,0,7311:.:1:1:.:.:1:-0.0173504
chr7	116436022	.	G	A	3814.64	PASS	SOMATIC;NS=2;DP=508;DPB=508.0;AC=1;AN=3;AF=0.25;RO=366;AO=141;PRO=0.0;PAO=0.0;QR=14074;QA=5412;PQR=0.0;PQA=0.0;SRF=168;SRR=198;SAF=63;SAR=78;SRP=8.34999;SAP=6.47542;AB=0.384196;ABP=45.7593;RUN=1;RPP=3.1489;RPPR=3.03403;RPL=69.0;RPR=72.0;EPP=4.25774;EPPR=11.5775;DPRA=2.60284;ODDS=88.3164;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992908;PAIREDR=0.994536;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.771;Dels=0.0;FS=0.0;HaplotypeScore=8.8625;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.014;QD=13.41;ReadPosRankSum=-2.077;SOR=0.726	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:138:140:5351:0:0:0.0,-37.9294,-481.505:0:0:137:134,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:366:226:8723:141:5412:-387.341,0.0,-685.164:140:38:366:219,133:38.0:0.375:2:4936,0,8702:.:1:1:.:.:1:-0.0173504
chr7	116436097	.	G	A	2545.44	PASS	SOMATIC;NS=2;DP=378;DPB=378.0;AC=1;AN=3;AF=0.25;RO=280;AO=98;PRO=0.0;PAO=0.0;QR=10727;QA=3749;PQR=0.0;PQA=0.0;SRF=126;SRR=154;SAF=39;SAR=59;SRP=9.09042;SAP=11.8735;AB=0.351254;ABP=56.6278;RUN=1;RPP=6.20103;RPPR=4.53033;RPL=55.0;RPR=43.0;EPP=10.1895;EPPR=3.28949;DPRA=2.81818;ODDS=62.7376;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.992857;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.302;Dels=0.0;FS=2.801;HaplotypeScore=5.9229;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.214;QD=11.7;ReadPosRankSum=-0.058;SOR=0.887	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.53:95:99:3747:0:0:0.0,-26.8206,-337.275:0:0:95:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.265:278:181:6980:98:3749:-261.618,0.0,-552.295:97:35:278:175,93:38.0:0.347:2:3282,0,7016:.:1:1:.:.:1:-0.0173504
chr7	116528581	.	A	G	5487.05	REJECT	NS=2;DP=341;DPB=391.0;AC=2;AN=4;AF=0.5;RO=196;AO=195;PRO=0.0;PAO=0.0;QR=7259;QA=7429;PQR=0.0;PQA=0.0;SRF=67;SRR=129;SAF=73;SAR=122;SRP=45.5977;SAP=29.7472;AB=0.498721;ABP=3.01585;RUN=1;RPP=36.696;RPPR=28.5362;RPL=125.0;RPR=70.0;EPP=5.51585;EPPR=26.4533;DPRA=0.0;ODDS=298.498;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994898;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6535;Dels=0.0;FS=2.0735;HaplotypeScore=8.7307;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.865;QD=16.99;ReadPosRankSum=-0.017;SOR=0.5205;ClippingRankSum=0.331	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:53:2010:47:1752:-130.625,0.0,-153.835:46:47:99:52,46:1530,0,1669:1:.:1:.:.:.:-0.00407189	0/1:129.501:291:143:5249:148:5677:-431.874,0.0,-393.361:148:51:291:143,148:5501,0,4937:.:1:1:.:.:.:-0.0173504
chr7	116534747	.	T	C	6967.1	REJECT	NS=2;DP=412;DPB=464.0;AC=2;AN=4;AF=0.5;RO=219;AO=245;PRO=0.0;PAO=0.0;QR=8523;QA=9314;PQR=0.0;PQA=0.0;SRF=108;SRR=111;SAF=100;SAR=145;SRP=3.09954;SAP=20.9582;AB=0.528017;ABP=6.17391;RUN=1;RPP=3.44459;RPPR=3.49615;RPL=126.0;RPR=119.0;EPP=17.9093;EPPR=7.38299;DPRA=0.0;ODDS=318.402;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8285;Dels=0.0;FS=5.738;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1025;QD=18.565;ReadPosRankSum=1.01;SOR=0.966;ClippingRankSum=-0.035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:48:1856:55:2092:-160.389,0.0,-139.144:54:53:101:47,53:1827,0,1723:1:.:1:.:.:.:-0.00407189	0/1:129.501:361:171:6667:190:7222:-551.766,0.0,-501.887:190:53:361:171,190:6936,0,6414:.:1:1:.:.:.:-0.0173504
chr7	124481245	.	G	A	5268.39	REJECT	NS=2;DP=210;DPB=245.0;AC=2;AN=4;AF=0.5;RO=68;AO=176;PRO=0.0;PAO=0.0;QR=2576;QA=6782;PQR=0.0;PQA=0.0;SRF=14;SRR=54;SAF=53;SAR=123;SRP=54.1038;SAP=63.4661;AB=0.718367;ABP=104.485;RUN=1;RPP=44.515;RPPR=18.4661;RPL=117.0;RPR=59.0;EPP=12.6832;EPPR=6.20364;DPRA=0.0;ODDS=93.9864;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9886;MQMR=60.0;PAIRED=0.982955;PAIREDR=0.970588;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2365;Dels=0.0;FS=5.0835;HaplotypeScore=5.8655;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.108;QD=23.665;ReadPosRankSum=0.7785;SOR=0.31;ClippingRankSum=-0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:127.636:66:41:1555:26:1013:-73.0653,0.0,-121.879:26:39:66:39,26:938,0,1430:1:.:1:.:.:.:-0.00407189	0/1:127.636:176:27:1021:150:5769:-471.088,0.0,-43.9008:149:85:176:27,149:5933,0,602:.:1:1:.:.:.:-0.0173504
chr7	124486980	.	T	C	11136.55	REJECT	NS=2;DP=293;DPB=338.0;AC=4;AN=4;AF=1.0;RO=0;AO=338;PRO=0.0;PAO=0.0;QR=0;QA=13033;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=226;SAR=112;SRP=0.0;SAP=86.5028;AB=0.0;ABP=0.0;RUN=1;RPP=44.1269;RPPR=0.0;RPL=129.0;RPR=209.0;EPP=32.7171;EPPR=0.0;DPRA=0.0;ODDS=59.1927;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985207;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.9;SOR=1.6765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:88:3364:-302.82,-23.832,0.0:87:100:87:0,86:3518,258,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:249:0:0:250:9669:-869.708,-67.7002,0.0:249:100:249:0,249:10773,740,0:.:1:1:.:.:.:-0.0173504
chr7	124488721	.	G	A	19.1396	REJECT	NS=1;DP=43;DPB=86.8667;AC=1;AN=4;AF=0.5;RO=7;AO=7;PRO=58.5;PAO=27.5;QR=233;QA=230;PQR=2113.0;PQA=981.0;SRF=7;SRR=0;SAF=1;SAR=6;SRP=18.2106;SAP=10.7656;AB=0.162791;ABP=45.4803;RUN=1;RPP=18.2106;RPPR=5.80219;RPL=0.0;RPR=7.0;EPP=10.7656;EPPR=5.80219;DPRA=0.0;ODDS=4.39479;GTI=0;TYPE=snp;CIGAR=1X29M;NUMALT=1;MEANALT=27.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.857143;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:19.1396:43:7:233:7:230:-8.54006,0.0,-102.454:7:50:14:.:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0173504
chr7	124488721	.	G	GAAAAA	258.73	PASS	DP=53;AC=1;AN=4;AF=0.5;BaseQRankSum=0.158;FS=21.553;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.683;QD=4.88;ReadPosRankSum=0.817;SOR=1.697;ClippingRankSum=-0.368	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:15,12:27:99.0:296,0,313:12:44:27:1:.:.:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0173504
chr7	124491972	.	C	A	2162.26	PASS	SOMATIC;NS=2;DP=409;DPB=409.0;AC=1;AN=3;AF=0.25;RO=321;AO=88;PRO=0.0;PAO=0.0;QR=12236;QA=3417;PQR=0.0;PQA=0.0;SRF=145;SRR=176;SAF=38;SAR=50;SRP=9.51119;SAP=6.56362;AB=0.28115;ABP=133.222;RUN=1;RPP=7.84676;RPPR=19.2524;RPL=51.0;RPR=37.0;EPP=7.84676;EPPR=22.0124;DPRA=3.26042;ODDS=60.901;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996885;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.861;Dels=0.0;FS=0.967;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.716;QD=9.25;ReadPosRankSum=-1.189;SOR=0.818	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.546:94:96:3706:0:0:0.0,-26.023,-333.598:0:0:94:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.273:313:225:8530:88:3417:-222.628,0.0,-682.44:88:28:313:213,84:38.0:0.287:2:2922,0,8502:.:1:1:.:.:1:-0.0173504
chr7	124499002	.	AT	CA	2312.575	REJECT	NS=2;DP=329;DPB=380.5;AC=2;AN=4;AF=0.5;RO=280;AO=96;PRO=6.0;PAO=3.0;QR=10717;QA=3693;PQR=114.0;PQA=110.0;SRF=184;SRR=96;SAF=61;SAR=35;SRP=63.067;SAP=18.3011;AB=0.255319;ABP=198.535;RUN=1;RPP=4.45795;RPPR=29.099;RPL=44.0;RPR=52.0;EPP=10.339;EPPR=9.99003;DPRA=0.0;ODDS=233.925;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996429;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=-0.875;Dels=0.0;FS=1.4795;HaplotypeScore=4.8484;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2945;QD=12.425;ReadPosRankSum=2.591;SOR=0.5675;ClippingRankSum=0.316	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4955:99:47:1812:49:1892:-157.43,0.0,-136.27:52:52:99:47,55:2138,0,3281:1:.:1:.:.:.:-0.00407189	0/1:119.4955:281:233:8905:47:1801:-102.084,0.0,-733.789:47:17:281:236,47:1209,0,9171:.:1:1:.:.:.:-0.0173504
chr7	128845018	.	C	T	4866.245000000001	REJECT	NS=2;DP=227;DPB=262.0;AC=3;AN=4;AF=0.75;RO=79;AO=183;PRO=0.0;PAO=0.0;QR=3030;QA=6936;PQR=0.0;PQA=0.0;SRF=59;SRR=20;SAF=119;SAR=64;SRP=44.818;SAP=38.9049;AB=0.590674;ABP=16.793;RUN=1;RPP=165.444;RPPR=49.2159;RPL=33.0;RPR=150.0;EPP=8.24319;EPPR=5.23675;DPRA=0.0;ODDS=44.0273;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0546;MQMR=60.0;PAIRED=0.994536;PAIREDR=0.987342;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.392;Dels=0.0;FS=4.661;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.03;MQRankSum=-0.478;QD=25.175;ReadPosRankSum=-1.752;SOR=0.973	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:68:0:0:69:2573:-231.717,-18.6948,0.0:68:100:68:0,68:2870,204,0:1:.:1:.:.:.:-0.00407189	0/1:129.501:193:79:3030:114:4363:-340.237,0.0,-220.331:114:59:193:79,114:4313,0,2815:.:1:1:.:.:.:.
chr7	128846328	.	G	C	8191.935	REJECT	NS=2;DP=347;DPB=395.0;AC=3;AN=4;AF=0.75;RO=107;AO=288;PRO=0.0;PAO=0.0;QR=4065;QA=11013;PQR=0.0;PQA=0.0;SRF=54;SRR=53;SAF=131;SAR=157;SRP=3.03059;SAP=8.10723;AB=0.643333;ABP=56.5443;RUN=1;RPP=7.35324;RPPR=6.44001;RPL=156.0;RPR=132.0;EPP=9.79615;EPPR=4.65412;DPRA=0.0;ODDS=60.2529;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993056;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.452;Dels=0.0;FS=1.9945;HaplotypeScore=6.8099;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.27;QD=27.94;ReadPosRankSum=0.411;SOR=0.874	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:95:3610:-324.968,-25.7415,0.0:93:100:93:0,91:3720,273,0:1:.:1:.:.:.:-0.00407189	0/1:129.501:300:107:4065:193:7403:-584.621,0.0,-284.398:193:64:300:107,193:7391,0,3646:.:1:1:.:.:.:-0.014491
chr7	132008454	.	G	C	2461.76	REJECT	NS=2;DP=402;DPB=460.0;AC=2;AN=4;AF=0.5;RO=339;AO=121;PRO=0.0;PAO=0.0;QR=13036;QA=4614;PQR=0.0;PQA=0.0;SRF=139;SRR=200;SAF=58;SAR=63;SRP=26.8453;SAP=3.45895;AB=0.263043;ABP=227.352;RUN=1;RPP=6.04318;RPPR=3.17044;RPL=67.0;RPR=54.0;EPP=7.04816;EPPR=25.3079;DPRA=0.0;ODDS=259.167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99705;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.619;Dels=0.0;FS=3.5395;HaplotypeScore=4.9653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2455;QD=11.29;ReadPosRankSum=0.474;SOR=0.52;ClippingRankSum=-1.568	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.6905:114:54:2081:61:2309:-176.636,0.0,-156.15:61:53:114:53,61:2111,0,1952:1:.:1:.:.:.:-0.00407189	0/1:124.6905:345:285:10955:60:2305:-113.909,0.0,-891.856:60:17:345:285,60:1571,0,11170:.:1:1:.:.:.:-0.014491
chr7	132008511	.	T	A	963.515	REJECT	NS=2;DP=239;DPB=263.0;AC=2;AN=4;AF=0.5;RO=209;AO=54;PRO=0.0;PAO=0.0;QR=8019;QA=2055;PQR=0.0;PQA=0.0;SRF=54;SRR=155;SAF=17;SAR=37;SRP=108.997;SAP=19.0953;AB=0.205323;ABP=201.374;RUN=1;RPP=49.4959;RPPR=113.236;RPL=44.0;RPR=10.0;EPP=3.0103;EPPR=6.76103;DPRA=0.0;ODDS=79.9078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0515;Dels=0.0;FS=1.526;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3715;QD=10.495;ReadPosRankSum=-0.8445;SOR=0.6085;ClippingRankSum=-0.103	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:48:23:892:25:969:-74.2991,0.0,-67.3595:25:52:48:23,25:935,0,857:1:.:1:.:.:.:-0.00407189	0/1:129.501:215:186:7127:29:1086:-39.4527,0.0,-582.928:29:13:215:186,29:562,0,7352:.:1:1:.:.:.:-0.014491
chr7	139502073	.	C	T	5638.865	REJECT	NS=2;DP=413;DPB=476.0;AC=2;AN=4;AF=0.5;RO=272;AO=204;PRO=0.0;PAO=0.0;QR=10516;QA=7822;PQR=0.0;PQA=0.0;SRF=146;SRR=126;SAF=116;SAR=88;SRP=6.20364;SAP=11.3556;AB=0.428571;ABP=24.1046;RUN=1;RPP=4.5431;RPPR=5.05404;RPL=108.0;RPR=96.0;EPP=9.14152;EPPR=15.7837;DPRA=0.0;ODDS=296.322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996324;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7745;Dels=0.0;FS=4.674;HaplotypeScore=7.7875;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1495;QD=14.095;ReadPosRankSum=0.172;SOR=1.1015;ClippingRankSum=0.547	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.784:123:78:3010:47:1826:-130.44,0.0,-237.002:46:38:123:75,46:1518,0,2582:1:.:1:.:.:.:-0.00407189	0/1:118.784:351:194:7506:157:5996:-444.215,0.0,-580.044:157:45:351:194,157:5636,0,7351:.:1:1:.:.:.:-0.014491
chr7	140482263	.	C	A	419.348	REJECT	NS=2;DP=232;DPB=370.647;AC=2;AN=2;AF=0.0;RO=105;AO=10;PRO=105.583;PAO=42.9167;QR=3795;QA=173;PQR=3663.08;PQA=1516.75;SRF=31;SRR=74;SAF=2;SAR=8;SRP=41.2489;SAP=10.8276;AB=0.0431034;ABP=423.677;RUN=1;RPP=6.48466;RPPR=18.0865;RPL=3.0;RPR=7.0;EPP=3.0103;EPPR=8.98702;DPRA=0.0;ODDS=14.4183;GTI=0;TYPE=snp;CIGAR=1X33M;NUMALT=3;MEANALT=27.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:62.5807:63:31:1099:1:14:-9.77357,-31.2084,-257.427:1:2:42:.:.:1:.:.:.:-0.00407189	./1:127.208:169:74:2696:9:159:-38.8126,-99.4476,-849.381:9:7:122:.:.:1:.:.:.:-0.014491
chr7	140482263	.	C	CA	419.348	REJECT	NS=2;DP=232;DPB=370.647;AC=2;AN=3;AF=0.25;RO=105;AO=21;PRO=105.583;PAO=78.5833;QR=3795;QA=635;PQR=3663.08;PQA=2626.08;SRF=31;SRR=74;SAF=11;SAR=10;SRP=41.2489;SAP=3.1137;AB=0.0905172;ABP=340.899;RUN=1;RPP=8.07707;RPPR=18.0865;RPL=7.0;RPR=14.0;EPP=3.94093;EPPR=8.98702;DPRA=0.0;ODDS=14.4183;GTI=0;TYPE=ins;CIGAR=1M1I33M;NUMALT=3;MEANALT=27.5;LEN=1;MQM=59.0952;MQMR=60.0;PAIRED=0.952381;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:62.5807:63:31:1099:5:171:-9.77357,0.0,-108.827:5:12:42:.:.:1:.:.:.:-0.00407189	./1:127.208:169:74:2696:16:464:-38.8126,-17.622,-318.295:16:13:122:.:.:1:.:.:.:-0.014491
chr7	140482263	.	CA	C	419.348	REJECT	NS=2;DP=232;DPB=370.647;AC=2;AN=3;AF=0.25;RO=105;AO=28;PRO=105.583;PAO=72.9167;QR=3795;QA=844;PQR=3663.08;PQA=2411.08;SRF=31;SRR=74;SAF=9;SAR=19;SRP=41.2489;SAP=10.7656;AB=0.12069;ABP=292.939;RUN=1;RPP=10.7656;RPPR=18.0865;RPL=9.0;RPR=19.0;EPP=4.25114;EPPR=8.98702;DPRA=0.0;ODDS=14.4183;GTI=0;TYPE=del;CIGAR=1M1D32M;NUMALT=3;MEANALT=27.5;LEN=1;MQM=60.3571;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:62.5807:63:31:1099:5:146:-9.77357,-6.48729,-132.271:5:12:42:.:.:1:.:.:.:-0.00407189	0/1:127.208:169:74:2696:23:698:-38.8126,0.0,-372.089:23:19:122:.:.:1:.:.:.:-0.014491
chr7	140484450	.	C	CT	43.968	REJECT	NS=2;DP=151;DPB=196.824;AC=2;AN=3;AF=0.25;RO=104;AO=19;PRO=34.8333;PAO=26.8333;QR=3770;QA=513;PQR=1186.5;PQA=887.5;SRF=22;SRR=82;SAF=4;SAR=15;SRP=78.1767;SAP=16.8392;AB=0.125828;ABP=186.636;RUN=1;RPP=12.2676;RPPR=6.01695;RPL=14.0;RPR=5.0;EPP=5.8675;EPPR=3.0103;DPRA=0.0;ODDS=2.42882;GTI=1;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=59.8077;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.0442328:38:30:1095:4:106:-0.413789,-0.99173,-99.4983:4:11:37:.:.:1:.:.:.:-0.00407189	0/1:11.2526:113:74:2675:15:407:-10.8918,0.0,-232.296:15:15:99:.:.:1:.:.:.:-0.014491
chr7	140484450	.	CT	C	43.968	REJECT	NS=2;DP=151;DPB=196.824;AC=2;AN=3;AF=0.25;RO=104;AO=13;PRO=34.8333;PAO=25.3333;QR=3770;QA=440;PQR=1186.5;PQA=857.0;SRF=22;SRR=82;SAF=3;SAR=10;SRP=78.1767;SAP=11.1951;AB=0.0860927;ABP=227.707;RUN=1;RPP=4.51363;RPPR=6.01695;RPL=8.0;RPR=5.0;EPP=7.18621;EPPR=3.0103;DPRA=0.0;ODDS=2.42882;GTI=1;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=59.8462;MQMR=59.8077;PAIRED=0.923077;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.0442328:38:30:1095:3:113:-0.413789,0.0,-98.634:3:8:37:.:.:1:.:.:.:-0.00407189	./1:11.2526:113:74:2675:10:327:-10.8918,-3.51735,-266.444:10:10:99:.:.:1:.:.:.:-0.014491
chr7	140488689	.	A	G	1380.45	REJECT	NS=2;DP=56;DPB=62.0;AC=2;AN=4;AF=0.5;RO=13;AO=49;PRO=0.0;PAO=0.0;QR=480;QA=1831;PQR=0.0;PQA=0.0;SRF=5;SRR=8;SAF=17;SAR=32;SRP=4.51363;SAP=12.9813;AB=0.790323;ABP=48.4011;RUN=1;RPP=10.4997;RPPR=4.51363;RPL=31.0;RPR=18.0;EPP=35.3165;EPPR=11.1951;DPRA=0.0;ODDS=11.5462;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979592;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7165;Dels=0.0;FS=1.316;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0585;QD=21.415;ReadPosRankSum=0.1315;SOR=1.2525;ClippingRankSum=-0.278	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:100.7145:11:7:256:4:151:-10.7077,0.0,-20.2453:4:36:11:7,4:137,0,256:1:.:1:.:.:.:-0.00407189	0/1:74.57235:51:6:224:45:1680:-137.55,0.0,-6.37196:45:88:51:6,45:1708,0,105:.:1:1:.:.:.:-0.014491
chr7	140493351	.	T	C	7530.59	REJECT	NS=2;DP=300;DPB=344.0;AC=2;AN=4;AF=0.5;RO=91;AO=253;PRO=0.0;PAO=0.0;QR=3457;QA=9522;PQR=0.0;PQA=0.0;SRF=39;SRR=52;SAF=92;SAR=161;SRP=7.04303;SAP=43.8735;AB=0.735465;ABP=168.673;RUN=1;RPP=3.43086;RPPR=5.89764;RPL=123.0;RPR=130.0;EPP=3.08755;EPPR=5.89764;DPRA=0.0;ODDS=145.102;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9231;PAIRED=0.992095;PAIREDR=0.956044;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0105;Dels=0.0;FS=4.3665;HaplotypeScore=8.787;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.119;QD=23.12;ReadPosRankSum=-1.0895;SOR=1.1495;ClippingRankSum=1.024	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:52:1970:35:1308:-94.1753,0.0,-153.784:34:41:82:44,33:1163,0,1578:1:.:1:.:.:.:-0.00407189	0/1:129.501:256:39:1487:218:8214:-669.257,0.0,-64.2176:217:85:256:39,217:8279,0,930:.:1:1:.:.:.:-0.014491
chr7	140495573	.	T	C	15054.75	REJECT	NS=2;DP=412;DPB=474.0;AC=4;AN=4;AF=1.0;RO=0;AO=474;PRO=0.0;PAO=0.0;QR=0;QA=17537;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=256;SAR=218;SRP=0.0;SAP=9.6255;AB=0.0;ABP=0.0;RUN=1;RPP=10.3402;RPPR=0.0;RPL=217.0;RPR=257.0;EPP=10.3402;EPPR=0.0;DPRA=0.0;ODDS=80.2569;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9494;MQMR=0.0;PAIRED=0.989451;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.7316;MLEAC=2;MLEAF=1.0;MQ=59.995;QD=27.93;SOR=0.8365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:121:0:0:122:4482:-403.303,-32.98,0.0:121:100:121:0,120:4648,358,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:351:0:0:352:13055:-1174.2,-95.2304,0.0:351:100:351:0,351:14427,1017,0:.:1:1:.:.:.:-0.014491
chr7	140496148	.	T	TA	667.667	REJECT	NS=2;DP=176;DPB=227.286;AC=2;AN=2;AF=0.0;RO=73;AO=17;PRO=35.25;PAO=28.25;QR=2652;QA=524;PQR=1231.5;PQA=991.5;SRF=44;SRR=29;SAF=12;SAR=5;SRP=9.70319;SAP=9.26925;AB=0.0965909;ABP=251.792;RUN=1;RPP=9.26925;RPPR=39.4494;RPL=5.0;RPR=12.0;EPP=3.13803;EPPR=3.27802;DPRA=0.0;ODDS=33.0958;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=58.8235;MQMR=59.7534;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.845:56:20:735:8:254:-28.9622,-14.4821,-78.688:8:18:45:.:.:1:.:.:.:-0.00407189	./1:160.002:120:53:1917:9:270:-46.9116,-40.7709,-210.663:9:9:95:.:.:1:.:.:.:-0.014491
chr7	140496148	.	TA	T	471.1985	REJECT	NS=2;DP=161;DPB=227.286;AC=2;AN=4;AF=0.5;RO=73;AO=37;PRO=35.25;PAO=23.25;QR=2652;QA=1255;PQR=1231.5;PQA=805.5;SRF=44;SRR=29;SAF=28;SAR=9;SRP=9.70319;SAP=24.1968;AB=0.210227;ABP=131.374;RUN=1;RPP=19.9713;RPPR=39.4494;RPL=10.0;RPR=27.0;EPP=5.88603;EPPR=3.27802;DPRA=0.0;ODDS=33.0958;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=61.6216;MQMR=59.7534;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.476;FS=1.0725;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=1.484;QD=2.67;RPA=16,15;RU=A;ReadPosRankSum=0.642;SOR=1.0005;STR;ClippingRankSum=0.534	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:114.9225:54:20:735:13:451:-28.9622,0.0,-86.709:16:33:48:32,20:228,0,572:1:.:1:.:.:.:-0.00407189	0/1:129.501:133:53:1917:24:804:-46.9116,0.0,-199.453:30:27:109:87,37:312,0,1317:.:1:1:.:.:.:-0.014491
chr7	140496148	.	TAA	T	667.667	REJECT	NS=2;DP=176;DPB=227.286;AC=2;AN=2;AF=0.0;RO=73;AO=13;PRO=35.25;PAO=24.25;QR=2652;QA=377;PQR=1231.5;PQA=840.5;SRF=44;SRR=29;SAF=8;SAR=5;SRP=9.70319;SAP=4.51363;AB=0.0738636;ABP=280.613;RUN=1;RPP=4.51363;RPPR=39.4494;RPL=5.0;RPR=8.0;EPP=11.1951;EPPR=3.27802;DPRA=0.0;ODDS=33.0958;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=3;MEANALT=18.0;LEN=2;MQM=60.0;MQMR=59.7534;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.845:56:20:735:4:127:-28.9622,-26.7432,-115.893:4:9:45:.:.:1:.:.:.:-0.00407189	./1:160.002:120:53:1917:9:250:-46.9116,-42.9185,-246.184:9:9:95:.:.:1:.:.:.:-0.014491
chr7	140497260	.	CAA	C	9401.04	REJECT	NS=2;DP=358;DPB=354.0;AC=2;AN=4;AF=0.5;RO=88;AO=308;PRO=29.0;PAO=27.0;QR=3347;QA=11444;PQR=996.5;PQA=942.5;SRF=49;SRR=39;SAF=170;SAR=138;SRP=5.47788;SAP=10.2297;AB=0.77193;ABP=259.282;RUN=1;RPP=13.1908;RPPR=12.8806;RPL=173.0;RPR=135.0;EPP=3.71532;EPPR=7.84676;DPRA=0.0;ODDS=111.071;GTI=0;TYPE=del;CIGAR=1M2D6M;NUMALT=1;MEANALT=2.5;LEN=2;MQM=60.1623;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=140497262;HOMLEN=2;HOMSEQ=AA;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=0.283;FS=4.06;MLEAC=1;MLEAF=0.5;MQ=60.325;MQRankSum=-0.216;QD=25.23;RPA=4,2;RU=A;ReadPosRankSum=-0.1795;SOR=0.8715;STR;ClippingRankSum=-0.277	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:54:2057:50:1870:-145.161,0.0,-174.7:55:48:115:82,83:2113,0,2299:1:.:1:1:.:.:-0.00407189	0/1:129.501:305:34:1290:258:9574:-803.081,0.0,-50.1648:268:88:305:157,363:12544,0,938:.:1:1:1:.:.:-0.014491
chr7	140498072	.	C	CTTTTTTTTTTT	549.73	PASS	DP=17;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=57.29;QD=32.34;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,12:12:42.0:549,42,0:12:100:12:1:.:.:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.014491
chr7	140498359	.	CT	C	199.4215	REJECT	NS=2;DP=54;DPB=91.25;AC=2;AN=4;AF=0.5;RO=20;AO=15;PRO=41.3333;PAO=29.3333;QR=686;QA=528;PQR=1411.17;PQA=981.167;SRF=18;SRR=2;SAF=14;SAR=1;SRP=30.8051;SAP=27.4756;AB=0.277778;ABP=26.1727;RUN=1;RPP=3.15506;RPPR=3.44459;RPL=8.0;RPR=7.0;EPP=4.31318;EPPR=3.44459;DPRA=0.0;ODDS=26.7217;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=59.2667;MQMR=59.85;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.1285;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=0.8925;QD=2.04;RPA=21,20;RU=T;ReadPosRankSum=-0.3005;SOR=0.4355;STR;ClippingRankSum=1.073	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:95.5075:15:6:206:5:192:-13.2639,0.0,-25.6812:5:47:11:6,6:87,0,75:1:.:1:.:.:.:-0.00407189	0/1:119.7575:50:14:480:10:336:-21.3107,0.0,-59.5426:14:42:34:21,19:162,0,239:.:1:1:.:.:.:-0.014491
chr7	140498359	.	CTT	C	274.113	REJECT	NS=2;DP=54;DPB=91.25;AC=2;AN=2;AF=0.0;RO=20;AO=4;PRO=41.3333;PAO=26.3333;QR=686;QA=149;PQR=1411.17;PQA=871.667;SRF=18;SRR=2;SAF=4;SAR=0;SRP=30.8051;SAP=11.6962;AB=0.111111;ABP=50.3001;RUN=1;RPP=5.18177;RPPR=3.44459;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=3.44459;DPRA=0.0;ODDS=26.7217;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=2;MEANALT=10.0;LEN=2;MQM=60.0;MQMR=59.85;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:116.015:18:6:206:0:0:-13.2639,-15.9537,-42.993:0:0:11:.:.:1:.:.:.:-0.00407189	./1:140.515:36:14:480:4:149:-21.3107,-18.1952,-114.018:4:14:28:.:.:1:.:.:.:-0.014491
chr7	140498812	.	A	AT	402.503	REJECT	NS=2;DP=110;DPB=146.75;AC=2;AN=2;AF=0.0;RO=67;AO=10;PRO=30.5833;PAO=18.5833;QR=2413;QA=349;PQR=1055.5;PQA=636.5;SRF=38;SRR=29;SAF=8;SAR=2;SRP=5.63551;SAP=10.8276;AB=0.0909091;ABP=162.91;RUN=1;RPP=6.48466;RPPR=3.04271;RPL=7.0;RPR=3.0;EPP=3.0103;EPPR=42.7126;DPRA=0.0;ODDS=13.0621;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=58.8209;PAIRED=1.0;PAIREDR=0.985075;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:56.7247:32:19:683:3:116:-9.25192,-5.04177,-63.532:3:10:29:.:.:1:.:.:.:-0.00407189	./1:138.357:78:48:1730:7:233:-37.0997,-34.0106,-204.99:7:10:73:.:.:1:.:.:.:-0.014491
chr7	140498812	.	A	ATT	402.503	REJECT	NS=2;DP=110;DPB=146.75;AC=2;AN=2;AF=0.0;RO=67;AO=4;PRO=30.5833;PAO=19.5833;QR=2413;QA=147;PQR=1055.5;PQA=672.5;SRF=38;SRR=29;SAF=2;SAR=2;SRP=5.63551;SAP=3.0103;AB=0.0363636;ABP=208.392;RUN=1;RPP=11.6962;RPPR=3.04271;RPL=4.0;RPR=0.0;EPP=3.0103;EPPR=42.7126;DPRA=0.0;ODDS=13.0621;GTI=0;TYPE=ins;CIGAR=1M2I23M;NUMALT=3;MEANALT=6.5;LEN=2;MQM=60.0;MQMR=58.8209;PAIRED=1.0;PAIREDR=0.985075;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:56.7247:32:19:683:2:73:-9.25192,-8.64209,-67.4038:2:7:29:.:.:1:.:.:.:-0.00407189	./1:138.357:78:48:1730:2:74:-37.0997,-43.9986,-216.053:2:3:73:.:.:1:.:.:.:-0.014491
chr7	140498812	.	AT	A	402.503	REJECT	NS=2;DP=110;DPB=146.75;AC=2;AN=4;AF=0.5;RO=67;AO=21;PRO=30.5833;PAO=20.25;QR=2413;QA=752;PQR=1055.5;PQA=702.5;SRF=38;SRR=29;SAF=13;SAR=8;SRP=5.63551;SAP=5.59539;AB=0.190909;ABP=94.2911;RUN=1;RPP=3.1137;RPPR=3.04271;RPL=11.0;RPR=10.0;EPP=15.5221;EPPR=42.7126;DPRA=0.0;ODDS=13.0621;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.4762;MQMR=58.8209;PAIRED=1.0;PAIREDR=0.985075;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.192;FS=3.621;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=2.171;QD=1.76;RPA=13,12;RU=T;ReadPosRankSum=1.04;SOR=1.179;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56.7247:32:19:683:5:187:-9.25192,0.0,-67.6746:5:17:29:.:.:.:.:1:.:.:.:-0.00407189	0/1:118.6785:91:48:1730:16:565:-37.0997,0.0,-167.998:17:21:82:72,19:222,0,1373:.:1:1:.:.:.:-0.014491
chr7	140499107	.	C	T	2045.98	REJECT	NS=2;DP=461;DPB=520.0;AC=2;AN=4;AF=0.5;RO=410;AO=110;PRO=0.0;PAO=0.0;QR=15540;QA=4207;PQR=0.0;PQA=0.0;SRF=196;SRR=214;SAF=65;SAR=45;SRP=4.72629;SAP=10.9066;AB=0.211538;ABP=378.842;RUN=1;RPP=3.08926;RPPR=9.13279;RPL=54.0;RPR=56.0;EPP=4.2737;EPPR=16.251;DPRA=0.0;ODDS=196.895;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990244;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8365;Dels=0.0;FS=4.18;HaplotypeScore=6.8236;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.195;QD=9.405;ReadPosRankSum=-0.086;SOR=0.9775;ClippingRankSum=0.532	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.089:114:61:2315:54:2036:-152.077,0.0,-177.203:53:47:114:60,53:1809,0,2123:1:.:1:.:.:.:-0.00407189	0/1:123.089:403:349:13225:56:2171:-85.6219,0.0,-1079.77:56:14:403:346,56:1255,0,13391:.:1:1:.:.:.:-0.014491
chr7	148504716	.	AG	A	2643.61	REJECT	NS=2;DP=439;DPB=479.8;AC=2;AN=4;AF=0.5;RO=306;AO=122;PRO=55.5;PAO=32.5;QR=11137;QA=4248;PQR=1958.5;PQA=1099.5;SRF=156;SRR=150;SAF=53;SAR=69;SRP=3.26577;SAP=7.56683;AB=0.277904;ABP=191.097;RUN=1;RPP=11.625;RPPR=8.57381;RPL=72.0;RPR=50.0;EPP=4.14943;EPPR=4.82696;DPRA=0.0;ODDS=267.869;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=1;MEANALT=6.5;LEN=1;MQM=60.1639;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993464;technology.ILLUMINA=1.0;BaseQRankSum=0.314;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.389;QD=13.22;ReadPosRankSum=-0.89;SOR=0.704;ClippingRankSum=-1.103	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.2625:110:47:1735:57:1951:-153.725,0.0,-136.809:59:54:108:52,61:1597,0,1315:1:.:1:.:.:.:-0.00407189	0/1:137.525:331:259:9402:65:2297:-117.789,0.0,-832.441:65:20:324:.:.:.:.:1:.:.:.:-0.014491
chr7	148506396	.	A	C	1494.45	REJECT	NS=2;DP=411;DPB=472.0;AC=2;AN=4;AF=0.5;RO=386;AO=86;PRO=0.0;PAO=0.0;QR=14939;QA=3248;PQR=0.0;PQA=0.0;SRF=167;SRR=219;SAF=45;SAR=41;SRP=18.2219;SAP=3.41429;AB=0.182203;ABP=417.062;RUN=1;RPP=13.1102;RPPR=3.0103;RPL=53.0;RPR=33.0;EPP=3.91929;EPPR=11.1336;DPRA=0.0;ODDS=105.704;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988372;PAIREDR=0.992228;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7205;Dels=0.0;FS=4.82;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.464;QD=6.8;ReadPosRankSum=0.484;SOR=0.5225;ClippingRankSum=-0.531	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:77:3013:45:1674:-117.592,0.0,-238.097:44:36:121:77,44:1440,0,2851:1:.:1:.:.:.:-0.00407189	0/1:129.501:350:309:11926:41:1574:-46.7596,0.0,-977.853:41:12:350:309,41:704,0,12314:.:1:1:.:.:.:-0.014491
chr7	148508833	.	A	G	1226.17	REJECT	NS=2;DP=229;DPB=266.0;AC=2;AN=4;AF=0.5;RO=204;AO=62;PRO=0.0;PAO=0.0;QR=7608;QA=2260;PQR=0.0;PQA=0.0;SRF=54;SRR=150;SAF=20;SAR=42;SRP=101.11;SAP=19.9618;AB=0.233083;ABP=167.618;RUN=1;RPP=9.87495;RPPR=67.7713;RPL=38.0;RPR=24.0;EPP=14.358;EPPR=3.3935;DPRA=0.0;ODDS=49.5267;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995098;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.842;Dels=0.0;FS=15.851;HaplotypeScore=4.8804;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.277;QD=9.515;ReadPosRankSum=0.6915;SOR=1.213;ClippingRankSum=0.548	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:35:1292:39:1432:-108.912,0.0,-96.3034:38:53:72:32,38:1264,0,1162:1:.:1:.:.:.:-0.00407189	0/1:129.501:192:169:6316:23:828:-22.5116,0.0,-516.285:23:12:192:169,23:339,0,6479:.:1:1:.:.:.:-0.014491
chr7	148543693	.	T	TA	1679.5	REJECT	NS=2;DP=241;DPB=261.1;AC=2;AN=2;AF=0.0;RO=148;AO=10;PRO=25.5;PAO=11.5;QR=5499;QA=363;PQR=929.833;PQA=423.833;SRF=42;SRR=106;SAF=2;SAR=8;SRP=63.1073;SAP=10.8276;AB=0.0414938;ABP=443.08;RUN=1;RPP=10.8276;RPPR=16.2152;RPL=8.0;RPR=2.0;EPP=3.87889;EPPR=28.8919;DPRA=0.0;ODDS=170.442;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993243;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:138.647:62:24:909:1:38:-100.27,-104.985,-194.843:1:2:60:.:.:1:.:.:.:-0.00407189	./1:138.647:179:124:4590:9:325:-77.5491,-83.7275,-490.767:9:5:169:.:.:1:.:.:.:-0.014491
chr7	148543693	.	TA	T	1679.5	REJECT	NS=2;DP=241;DPB=261.1;AC=2;AN=4;AF=0.5;RO=148;AO=71;PRO=25.5;PAO=12.0;QR=5499;QA=2626;PQR=929.833;PQA=430.333;SRF=42;SRR=106;SAF=20;SAR=51;SRP=63.1073;SAP=32.4016;AB=0.294606;ABP=91.3198;RUN=1;RPP=16.4979;RPPR=16.2152;RPL=46.0;RPR=25.0;EPP=4.50892;EPPR=28.8919;DPRA=0.0;ODDS=170.442;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993243;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.176;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.44;QD=10.65;ReadPosRankSum=-0.811;SOR=0.69;ClippingRankSum=0.811	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8235:64:24:909:35:1282:-100.27,0.0,-80.3756:35:56:63:31,36:815,0,652:1:.:1:.:.:.:-0.00407189	0/1:138.647:179:124:4590:36:1344:-77.5491,0.0,-406.209:36:21:169:.:.:.:.:1:.:.:.:-0.014491
chr7	150025915	.	G	T	2927.62	PASS	SOMATIC;NS=2;DP=413;DPB=413.0;AC=1;AN=3;AF=0.25;RO=299;AO=113;PRO=0.0;PAO=0.0;QR=11443;QA=4271;PQR=0.0;PQA=0.0;SRF=156;SRR=143;SAF=54;SAR=59;SRP=4.23765;SAP=3.49071;AB=0.359873;ABP=56.5641;RUN=1;RPP=5.3355;RPPR=14.0565;RPL=62.0;RPR=51.0;EPP=15.0207;EPPR=15.2185;DPRA=3.17172;ODDS=62.1451;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.461;Dels=0.0;FS=6.325;HaplotypeScore=3.9649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.116;QD=12.01;ReadPosRankSum=1.768;SOR=0.607	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:94:98:3751:0:0:0.0,-26.5633,-337.646:0:0:93:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:314:201:7692:113:4271:-299.492,0.0,-606.846:113:36:314:193,108:37.0:0.356:2:3800,0,7698:.:1:1:.:.:1:-0.014491
chr7	150025966	.	T	C	1843.31	PASS	SOMATIC;NS=2;DP=332;DPB=332.0;AC=1;AN=3;AF=0.25;RO=254;AO=78;PRO=0.0;PAO=0.0;QR=9713;QA=2903;PQR=0.0;PQA=0.0;SRF=104;SRR=150;SAF=25;SAR=53;SRP=21.1002;SAP=24.8364;AB=0.309524;ABP=82.4241;RUN=1;RPP=16.4846;RPPR=3.86521;RPL=50.0;RPR=28.0;EPP=3.0103;EPPR=7.14807;DPRA=3.15;ODDS=50.9218;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996063;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.88;Dels=0.0;FS=10.428;HaplotypeScore=2.9238;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.595;QD=9.7;ReadPosRankSum=-1.201;SOR=1.351	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:77:80:3074:0:0:0.0,-21.6891,-276.779:0:0:77:75,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:129.501:252:174:6639:78:2903:-192.893,0.0,-528.985:78:31:252:167,76:37.0:0.318:2:2473,0,6684:.:1:1:.:.:1:-0.014491
chr7	151168415	.	CAAT	C	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:45,0:45:0.0222222,0.0:60.0,0.0:38.3134,0.0:0.0,0.0:0,0:0,0:32,13,0,0:0:0:45:.:.:.:.:0:.:-0.00407189	0/1:86,53:139:0.0930233,0.0188679:60.0,60.0:37.7184,39.2585:0.00121359,0.0:73,11:27,11:64,22,36,17:53:38:139:.:.:.:.:1:.:-0.014491
chr7	151168534	.	G	A	3220.88	PASS	SOMATIC;NS=2;DP=428;DPB=428.0;AC=1;AN=3;AF=0.25;RO=308;AO=120;PRO=0.0;PAO=0.0;QR=11699;QA=4589;PQR=0.0;PQA=0.0;SRF=155;SRR=153;SAF=65;SAR=55;SRP=3.0385;SAP=4.81986;AB=0.382166;ABP=40.8797;RUN=1;RPP=3.66174;RPPR=3.71532;RPL=63.0;RPR=57.0;EPP=4.16842;EPPR=3.1231;DPRA=2.75439;ODDS=72.1231;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99026;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.859;Dels=0.0;FS=0.426;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.223;QD=13.27;ReadPosRankSum=-0.805;SOR=0.779	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.428:112:114:4339:0:0:0.0,-30.8967,-390.533:0:0:112:110,0:.:0.0:0:.:.:.:0:.:.:0:-0.00407189	0/1:119.714:314:194:7360:120:4589:-327.738,0.0,-576.982:120:38:314:187,115:38.0:0.378:2:4194,0,7276:.:1:1:.:.:1:-0.014491
chr7	151873853	.	C	T	5646.805	REJECT	NS=2;DP=379;DPB=432.0;AC=2;AN=4;AF=0.5;RO=229;AO=203;PRO=0.0;PAO=0.0;QR=8727;QA=7743;PQR=0.0;PQA=0.0;SRF=119;SRR=110;SAF=102;SAR=101;SRP=3.77838;SAP=3.021;AB=0.469907;ABP=6.40825;RUN=1;RPP=3.53445;RPPR=6.43345;RPL=105.0;RPR=98.0;EPP=9.69587;EPPR=4.61283;DPRA=0.0;ODDS=308.747;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995074;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7515;Dels=0.0;FS=0.656;HaplotypeScore=6.7482;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4915;QD=15.73;ReadPosRankSum=0.2185;SOR=0.6885;ClippingRankSum=1.949	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:58:2215:47:1806:-134.105,0.0,-170.905:47:45:105:58,47:1539,0,2074:1:.:1:.:.:.:-0.00407189	0/1:129.501:326:171:6512:156:5937:-445.457,0.0,-497.167:155:48:326:171,155:5594,0,6255:.:1:1:.:.:.:-0.014491
chr7	151875100	.	TA	T	83.272	REJECT	NS=2;DP=29;DPB=40.8293;AC=2;AN=3;AF=0.25;RO=12;AO=6;PRO=20.1667;PAO=18.1667;QR=457;QA=135;PQR=712.333;PQA=621.333;SRF=0;SRR=12;SAF=0;SAR=6;SRP=29.068;SAP=16.0391;AB=0.206897;ABP=24.6501;RUN=1;RPP=8.80089;RPPR=3.73412;RPL=5.0;RPR=1.0;EPP=8.80089;EPPR=3.73412;DPRA=0.0;ODDS=1.67818;GTI=0;TYPE=del;CIGAR=1M1D39M;NUMALT=2;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.52;FS=7.368;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-0.794;QD=1.45;RPA=27,26;RU=A;ReadPosRankSum=0.849;SOR=3.056;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.13291:10:3:116:1:14:-3.96929,-4.33618,-19.9725:1:13:8:.:.:.:.:1:.:.:.:-0.00407189	0/1:90.63035:36:9:341:5:121:-13.8676,0.0,-35.1551:9:42:21:11,14:117,0,106:.:1:1:.:.:.:-0.014491
chr7	151875100	.	TAA	T	83.272	REJECT	NS=2;DP=29;DPB=40.8293;AC=2;AN=3;AF=0.25;RO=12;AO=7;PRO=20.1667;PAO=14.6667;QR=457;QA=148;PQR=712.333;PQA=509.333;SRF=0;SRR=12;SAF=0;SAR=7;SRP=29.068;SAP=18.2106;AB=0.241379;ABP=19.8579;RUN=1;RPP=10.7656;RPPR=3.73412;RPL=6.0;RPR=1.0;EPP=10.7656;EPPR=3.73412;DPRA=0.0;ODDS=1.67818;GTI=0;TYPE=del;CIGAR=1M2D38M;NUMALT=2;MEANALT=4.0;LEN=2;MQM=59.7143;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.13291:10:3:116:4:71:-3.96929,0.0,-14.8466:4:50:8:.:.:1:.:.:.:-0.00407189	./1:82.2607:19:9:341:3:77:-13.8676,-11.5392,-54.3464:3:18:17:.:.:1:.:.:.:-0.014491
chr7	151882622	.	TAG	T	43.73	PASS	DP=64;AC=2;AN=4;AF=0.5;END=151882624;HOMLEN=2;HOMSEQ=AG;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=-3.711;FS=4.502;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=-4.016;QD=0.68;ReadPosRankSum=1.614;SOR=0.152;ClippingRankSum=-0.831	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:57,6:6:10:63:63:81.0:81,0,2375:1:.:.:.:.:.:-0.00407189	0/1:111,23:23:17:134:.:.:.:.:.:.:1:.:.:-0.014491
chr7	151891358	.	T	TA	490.287	REJECT	NS=2;DP=246;DPB=310.19;AC=2;AN=2;AF=0.0;RO=165;AO=15;PRO=62.5;PAO=45.5;QR=6127;QA=492;PQR=2191.17;PQA=1549.17;SRF=42;SRR=123;SAF=3;SAR=12;SRP=89.3559;SAP=14.7363;AB=0.0609756;ABP=414.849;RUN=1;RPP=3.15506;RPPR=3.12874;RPL=8.0;RPR=7.0;EPP=6.62942;EPPR=4.60271;DPRA=0.0;ODDS=32.7461;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=2;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.8788;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.238:56:34:1269:6:186:-16.9723,-12.7889,-133.625:6:12:49:.:.:1:.:.:.:-0.00407189	./1:160.002:190:131:4858:9:306:-37.1404,-48.2678,-485.594:9:5:166:.:.:1:.:.:.:-0.014491
chr7	151891358	.	TA	T	490.287	REJECT	NS=2;DP=246;DPB=310.19;AC=2;AN=4;AF=0.5;RO=165;AO=35;PRO=62.5;PAO=41.0;QR=6127;QA=1247;PQR=2191.17;PQA=1420.67;SRF=42;SRR=123;SAF=17;SAR=18;SRP=89.3559;SAP=3.07234;AB=0.142276;ABP=276.439;RUN=1;RPP=3.07234;RPPR=3.12874;RPL=17.0;RPR=18.0;EPP=4.56135;EPPR=4.60271;DPRA=0.0;ODDS=32.7461;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=12.5;LEN=1;MQM=60.5714;MQMR=59.8788;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.226;FS=18.324;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.417;QD=1.63;ReadPosRankSum=-0.607;SOR=1.214;ClippingRankSum=0.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:114.119:55:34:1269:9:311:-16.9723,0.0,-125.736:10:20:52:43,12:153,0,896:1:.:1:.:.:.:-0.00407189	0/1:160.002:190:131:4858:26:936:-37.1404,0.0,-481.669:26:16:166:.:.:.:.:1:.:.:.:-0.014491
chr7	151927021	.	C	A	1606.565	REJECT	NS=2;DP=277;DPB=308.0;AC=2;AN=4;AF=0.5;RO=192;AO=116;PRO=0.0;PAO=0.0;QR=7414;QA=4495;PQR=0.0;PQA=0.0;SRF=140;SRR=52;SAF=87;SAR=29;SRP=90.593;SAP=65.983;AB=0.376623;ABP=43.7325;RUN=1;RPP=24.6501;RPPR=13.1891;RPL=41.0;RPR=75.0;EPP=5.70592;EPPR=52.2756;DPRA=0.0;ODDS=122.735;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=26.4828;MQMR=33.7604;PAIRED=1.0;PAIREDR=0.994792;technology.ILLUMINA=1.0;MQ0=16;BaseQRankSum=0.296;Dels=0.0;FS=5.106;HaplotypeScore=62.4536;MLEAC=1;MLEAF=0.5;MQ=33.775;MQRankSum=-4.481;QD=10.32;ReadPosRankSum=0.8175;SOR=0.6345;ClippingRankSum=-0.439	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.469:72:44:1721:33:1265:-56.0376,0.0,-97.473:30:41:72:41,27:990,0,2294:1:.:1:.:.:.:-0.00407189	0/1:117.469:238:148:5693:83:3230:-120.066,0.0,-336.357:87:36:238:154,92:1627,0,4473:.:1:1:.:.:.:-0.014491
chr7	151927025	.	A	G	618.685	REJECT	NS=2;DP=287;DPB=317.0;AC=2;AN=4;AF=0.5;RO=249;AO=68;PRO=0.0;PAO=0.0;QR=9617;QA=2554;PQR=0.0;PQA=0.0;SRF=172;SRR=77;SAF=52;SAR=16;SRP=81.7153;SAP=44.396;AB=0.214511;ABP=227.425;RUN=1;RPP=3.0103;RPPR=37.623;RPL=34.0;RPR=34.0;EPP=35.7101;EPPR=33.3673;DPRA=0.0;ODDS=19.4444;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=28.9706;MQMR=32.1888;PAIRED=0.985294;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=17;BaseQRankSum=-1.7625;Dels=0.0;FS=5.556;HaplotypeScore=66.1248;MLEAC=1;MLEAF=0.5;MQ=34.17;MQRankSum=-0.5915;QD=2.74;ReadPosRankSum=0.6385;SOR=1.628;ClippingRankSum=0.071	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:91.723:72:62:2400:14:535:-11.8089,0.0,-144.845:13:17:72:57,12:161,0,2118:1:.:1:.:.:.:-0.00407189	0/1:117.73:249:187:7217:54:2019:-63.0445,0.0,-415.171:54:21:249:203,54:942,0,5450:.:1:1:.:.:.:-0.014491
chr7	151927026	.	T	C	1598.28	REJECT	NS=2;DP=285;DPB=316.0;AC=2;AN=4;AF=0.5;RO=201;AO=115;PRO=0.0;PAO=0.0;QR=7793;QA=4421;PQR=0.0;PQA=0.0;SRF=138;SRR=63;SAF=83;SAR=32;SRP=63.7791;SAP=52.1233;AB=0.363924;ABP=53.8337;RUN=1;RPP=21.1563;RPPR=16.2444;RPL=42.0;RPR=73.0;EPP=8.4673;EPPR=57.47;DPRA=0.0;ODDS=122.922;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=26.5391;MQMR=34.408;PAIRED=1.0;PAIREDR=0.995025;technology.ILLUMINA=1.0;MQ0=17;BaseQRankSum=1.817;Dels=0.0;FS=4.992;HaplotypeScore=65.1253;MLEAC=1;MLEAF=0.5;MQ=34.165;MQRankSum=-4.554;QD=9.895;ReadPosRankSum=1.1095;SOR=0.665;ClippingRankSum=-0.415	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:45:1760:31:1218:-55.8266,0.0,-103.748:28:39:72:43,26:962,0,2360:1:.:1:.:.:.:-0.00407189	0/1:129.501:247:156:6033:84:3203:-117.345,0.0,-362.332:88:35:247:163,92:1624,0,4763:.:1:1:.:.:.:-0.014491
chr7	151927127	.	A	G	1966.17	REJECT	NS=2;DP=257;DPB=292.0;AC=2;AN=4;AF=0.5;RO=155;AO=137;PRO=0.0;PAO=0.0;QR=5861;QA=5142;PQR=0.0;PQA=0.0;SRF=33;SRR=122;SAF=21;SAR=116;SRP=113.98;SAP=146.058;AB=0.469178;ABP=5.41974;RUN=1;RPP=47.5334;RPPR=20.1719;RPL=95.0;RPR=42.0;EPP=4.92817;EPPR=3.02431;DPRA=0.0;ODDS=112.216;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=26.3504;MQMR=31.2968;PAIRED=0.992701;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=12;BaseQRankSum=1.185;Dels=0.0;FS=4.891;HaplotypeScore=1.9623;MLEAC=1;MLEAF=0.5;MQ=31.705;MQRankSum=-2.9805;QD=9.345;ReadPosRankSum=0.033;SOR=1.0375;ClippingRankSum=1.131	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.268:74:46:1773:36:1360:-52.144,0.0,-94.5263:31:42:74:40,27:605,0,1145:1:.:1:.:.:.:-0.00407189	0/1:117.268:216:109:4088:101:3782:-170.614,0.0,-219.956:103:48:216:116,106:2266,0,3044:.:1:1:.:.:.:-0.014491
chr7	151932897	.	C	A	79.77	PASS	SOMATIC;DP=291;AC=1;AN=4;AF=0.5;MQ0=30;BaseQRankSum=1.395;Dels=0.0;FS=4.956;HaplotypeScore=4.5962;MLEAC=1;MLEAF=0.5;MQ=41.1;MQRankSum=-5.345;QD=0.27;ReadPosRankSum=1.755;SOR=0.368	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00407189	0/1:261,30:291:99.0:108,0,7696:30:10:291:.:1:.:.:.:.:-0.014491
chr7	151932908	.	T	C	138.9445	REJECT	NS=2;DP=318;DPB=343.0;AC=2;AN=4;AF=0.5;RO=276;AO=67;PRO=0.0;PAO=0.0;QR=10573;QA=2595;PQR=0.0;PQA=0.0;SRF=180;SRR=96;SAF=8;SAR=59;SRP=58.5245;SAP=87.3088;AB=0.195335;ABP=279.547;RUN=1;RPP=3.30199;RPPR=3.13618;RPL=35.0;RPR=32.0;EPP=3.82055;EPPR=3.51383;DPRA=0.0;ODDS=15.7011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=20.1642;MQMR=43.7174;PAIRED=0.985075;PAIREDR=0.978261;technology.ILLUMINA=1.0;MQ0=31;BaseQRankSum=1.311;Dels=0.0;FS=40.0155;HaplotypeScore=18.1204;MLEAC=1;MLEAF=0.5;MQ=42.295;MQRankSum=-7.1185;QD=1.475;ReadPosRankSum=0.285;SOR=3.7005;ClippingRankSum=0.132	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:97.55465:70:60:2319:14:539:-11.7742,0.0,-172.768:12:17:70:57,10:181,0,2153:1:.:1:.:.:.:-0.00407189	0/1:83.59455:281:216:8254:53:2056:-15.5273,0.0,-598.764:67:24:281:212,82:225,0,7631:.:1:1:.:.:.:-0.014491
chr7	151932945	.	C	T	425.78	REJECT	NS=2;DP=365;DPB=398.0;AC=2;AN=4;AF=0.5;RO=313;AO=85;PRO=0.0;PAO=0.0;QR=12084;QA=3205;PQR=0.0;PQA=0.0;SRF=150;SRR=163;SAF=27;SAR=58;SRP=4.18276;SAP=27.5607;AB=0.213568;ABP=286.633;RUN=1;RPP=154.477;RPPR=10.5654;RPL=4.0;RPR=81.0;EPP=21.6339;EPPR=11.5089;DPRA=0.0;ODDS=28.284;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=25.4118;MQMR=40.8403;PAIRED=1.0;PAIREDR=0.980831;technology.ILLUMINA=1.0;MQ0=33;BaseQRankSum=-0.4905;Dels=0.0;FS=11.487;HaplotypeScore=10.3595;MLEAC=1;MLEAF=0.5;MQ=41.93;MQRankSum=-4.666;QD=2.18;ReadPosRankSum=-1.5145;SOR=1.435;ClippingRankSum=-0.061	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:110.656:83:71:2740:22:811:-17.0976,0.0,-193.15:16:19:83:63,11:197,0,2387:1:.:1:.:.:.:-0.00407189	0/1:119.526:319:242:9344:63:2394:-53.5447,0.0,-632.386:76:24:319:243,90:722,0,8076:.:1:1:.:.:.:-0.014491
chr7	151932965	.	C	T	834.589	REJECT	NS=2;DP=373;DPB=412.0;AC=2;AN=4;AF=0.5;RO=307;AO=104;PRO=0.0;PAO=0.0;QR=11729;QA=4017;PQR=0.0;PQA=0.0;SRF=134;SRR=173;SAF=33;SAR=71;SRP=13.7686;SAP=33.1604;AB=0.252427;ABP=222.35;RUN=1;RPP=136.639;RPPR=3.01737;RPL=12.0;RPR=92.0;EPP=21.8019;EPPR=13.7686;DPRA=0.0;ODDS=45.7666;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=24.8846;MQMR=45.0879;PAIRED=1.0;PAIREDR=0.980456;technology.ILLUMINA=1.0;MQ0=30;BaseQRankSum=0.7005;Dels=0.0;FS=8.844;HaplotypeScore=13.5793;MLEAC=1;MLEAF=0.5;MQ=44.91;MQRankSum=-6.6845;QD=3.355;ReadPosRankSum=2.9445;SOR=1.247;ClippingRankSum=0.69	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.304:91:75:2828:27:1059:-24.8483,0.0,-204.098:20:22:91:66,14:296,0,2370:1:.:1:.:.:.:-0.00407189	0/1:121.304:322:232:8901:77:2958:-84.1387,0.0,-630.046:89:27:321:233,101:1154,0,8016:.:1:1:.:.:.:-0.014491
chr7	151933033	.	G	A	122.369	REJECT	NS=2;DP=255;DPB=281.0;AC=2;AN=4;AF=0.5;RO=226;AO=55;PRO=0.0;PAO=0.0;QR=8555;QA=2072;PQR=0.0;PQA=0.0;SRF=75;SRR=151;SAF=14;SAR=41;SRP=58.5078;SAP=31.7922;AB=0.19573;ABP=228.975;RUN=1;RPP=57.0602;RPPR=70.8064;RPL=46.0;RPR=9.0;EPP=20.4216;EPPR=3.97113;DPRA=0.0;ODDS=6.94342;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=22.2545;MQMR=59.3717;PAIRED=1.0;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=20;BaseQRankSum=-1.2405;Dels=0.0;FS=5.1095;HaplotypeScore=5.8986;MLEAC=1;MLEAF=0.5;MQ=54.785;MQRankSum=-7.089;QD=1.215;ReadPosRankSum=-2.6675;SOR=1.0605;ClippingRankSum=-1.03	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56.07955:65:55:2050:14:502:-4.6401,0.0,-167.048:10:15:65:54,7:82,0,1984:1:.:1:.:.:.:-0.00407189	0/1:110.4055:221:171:6505:41:1570:-23.2911,0.0,-526.47:51:23:221:169,61:385,0,6558:.:1:1:.:.:.:-0.014491
chr7	151944961	.	T	A	470.894	REJECT	NS=2;DP=297;DPB=297.0;AC=2;AN=4;AF=0.5;RO=248;AO=49;PRO=0.0;PAO=0.0;QR=9472;QA=1894;PQR=0.0;PQA=0.0;SRF=210;SRR=38;SAF=43;SAR=6;SRP=262.046;SAP=63.6786;AB=0.164983;ABP=292.547;RUN=1;RPP=26.4533;RPPR=133.334;RPL=13.0;RPR=36.0;EPP=19.0083;EPPR=41.1512;DPRA=0.0;ODDS=52.282;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=35.0;MQMR=32.0766;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=108;BaseQRankSum=1.3215;Dels=0.0;FS=1.523;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=30.915;MQRankSum=1.8815;QD=3.585;ReadPosRankSum=1.0185;SOR=0.9765;ClippingRankSum=-0.505	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.0805:73:57:2163:18:681:-27.7318,0.0,-129.218:17:24:73:54,17:405,0,1661:1:.:1:.:.:.:-0.00407189	0/1:121.0805:276:191:7309:31:1213:-35.1477,0.0,-443.003:34:13:276:292,38:641,0,5774:.:1:1:.:.:.:-0.014491
chr7	151944981	.	C	A	64.77	PASS	SOMATIC;DP=443;AC=1;AN=4;AF=0.5;MQ0=110;BaseQRankSum=2.548;Dels=0.0;FS=31.148;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=37.18;MQRankSum=-7.882;QD=0.15;ReadPosRankSum=5.352;SOR=4.946	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00407189	0/1:347,96:443:93.0:93,0,10262:96:22:443:.:1:.:.:.:.:-0.014491
chr7	151945007	.	C	T	6095.9	REJECT	NS=2;DP=521;DPB=548.0;AC=2;AN=4;AF=0.5;RO=286;AO=262;PRO=0.0;PAO=0.0;QR=10792;QA=9944;PQR=0.0;PQA=0.0;SRF=210;SRR=76;SAF=178;SAR=84;SRP=139.342;SAP=76.2436;AB=0.478102;ABP=5.29272;RUN=1;RPP=76.2436;RPPR=4.10363;RPL=84.0;RPR=178.0;EPP=12.5913;EPPR=23.5406;DPRA=0.0;ODDS=340.333;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=45.5573;MQMR=44.5699;PAIRED=0.98855;PAIREDR=0.996503;technology.ILLUMINA=1.0;MQ0=94;BaseQRankSum=0.9465;Dels=0.0;FS=2.833;HaplotypeScore=6.7621;MLEAC=1;MLEAF=0.5;MQ=44.725;MQRankSum=0.9875;QD=14.24;ReadPosRankSum=-0.241;SOR=0.54;ClippingRankSum=0.472	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.1185:142:64:2420:82:3087:-208.091,0.0,-150.515:79:55:142:63,76:2379,0,1881:1:.:1:.:.:.:-0.00407189	0/1:120.1185:448:222:8372:180:6857:-448.812,0.0,-559.042:189:42:448:296,198:5872,0,7171:.:1:1:.:.:.:-0.014491
chr7	151945071	.	G	GT	714.149	REJECT	NS=2;DP=732;DPB=778.667;AC=2;AN=4;AF=0.5;RO=642;AO=86;PRO=15.5;PAO=17.5;QR=24303;QA=3020;PQR=383.0;PQA=458.0;SRF=343;SRR=299;SAF=40;SAR=46;SRP=9.55854;SAP=3.91929;AB=0.117486;ABP=933.302;RUN=1;RPP=3.0103;RPPR=30.4074;RPL=43.0;RPR=43.0;EPP=3.41429;EPPR=3.0103;DPRA=0.0;ODDS=65.2523;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=51.0;MQMR=47.1931;PAIRED=1.0;PAIREDR=0.993769;technology.ILLUMINA=1.0;END=151945071;HOMLEN=1;HOMSEQ=T;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.407;FS=2.768;MLEAC=1;MLEAF=0.5;MQ=51.47;MQRankSum=1.148;QD=2.29;ReadPosRankSum=0.874;SOR=1.004;ClippingRankSum=0.155	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121,28:26:15:169:129.501:177:156:5926:26:891:-28.899,0.0,-418.927:434,0,4786:1:.:1:1:.:.:-0.00407189	0/1:336,89:74:16:485:160.002:547:486:18377:60:2129:-48.1466,0.0,-1308.9:.:.:.:1:1:.:.:-0.014491
chr7	151945101	.	G	C	863.269	REJECT	NS=2;DP=751;DPB=852.0;AC=2;AN=4;AF=0.5;RO=667;AO=184;PRO=0.0;PAO=0.0;QR=25191;QA=7050;PQR=0.0;PQA=0.0;SRF=310;SRR=357;SAF=83;SAR=101;SRP=10.2019;SAP=6.83398;AB=0.215962;ABP=600.053;RUN=1;RPP=320.423;RPPR=19.4217;RPL=10.0;RPR=174.0;EPP=10.9881;EPPR=9.60285;DPRA=0.0;ODDS=4.32688;GTI=1;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=22.75;MQMR=45.7331;PAIRED=0.994565;PAIREDR=0.998501;technology.ILLUMINA=1.0;MQ0=1;BaseQRankSum=2.948;Dels=0.0;FS=1.285;HaplotypeScore=12.7732;MLEAC=1;MLEAF=0.5;MQ=46.025;MQRankSum=-9.522;QD=1.61;ReadPosRankSum=1.241;SOR=0.861;ClippingRankSum=-0.977	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49.5284945:186:167:6338:33:1235:-7.55019,0.0,-446.33:27:14:186:151,21:153,0,5489:1:.:1:.:.:.:-0.00407189	0/1:129.501:651:500:18853:151:5815:-122.241,0.0,-1320.1:151:23:650:499,151:1656,0,16688:.:1:1:.:.:.:-0.014491
chr7	151945140	.	C	T	3090.49	REJECT	NS=2;DP=698;DPB=780.0;AC=2;AN=4;AF=0.5;RO=576;AO=204;PRO=0.0;PAO=0.0;QR=22199;QA=7855;PQR=0.0;PQA=0.0;SRF=263;SRR=313;SAF=77;SAR=127;SRP=12.4351;SAP=29.6215;AB=0.261538;ABP=388.263;RUN=1;RPP=12.5903;RPPR=36.3213;RPL=117.0;RPR=87.0;EPP=23.618;EPPR=3.9754;DPRA=0.0;ODDS=133.897;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=33.4118;MQMR=35.5521;PAIRED=1.0;PAIREDR=0.998264;technology.ILLUMINA=1.0;MQ0=17;BaseQRankSum=0.951;Dels=0.0;FS=9.427;HaplotypeScore=8.4744;MLEAC=1;MLEAF=0.5;MQ=40.27;MQRankSum=-2.0455;QD=5.145;ReadPosRankSum=0.4395;SOR=1.497;ClippingRankSum=0.341	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:165:141:5459:39:1501:-60.479,0.0,-329.258:36:22:165:117,34:704,0,3811:1:.:1:.:.:.:-0.00407189	0/1:129.501:608:435:16740:165:6354:-260.33,0.0,-960.838:167:28:608:446,170:3608,0,11991:.:1:1:.:.:.:-0.014491
chr7	151945167	.	G	T	3582.36	REJECT	NS=2;DP=593;DPB=663.0;AC=2;AN=4;AF=0.5;RO=445;AO=218;PRO=0.0;PAO=0.0;QR=16664;QA=8277;PQR=0.0;PQA=0.0;SRF=202;SRR=243;SAF=53;SAR=165;SRP=11.2131;SAP=127.96;AB=0.328808;ABP=171.779;RUN=1;RPP=76.681;RPPR=102.796;RPL=152.0;RPR=66.0;EPP=5.56029;EPPR=3.60075;DPRA=0.0;ODDS=239.712;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=32.6376;MQMR=38.1685;PAIRED=1.0;PAIREDR=0.997753;technology.ILLUMINA=1.0;MQ0=32;BaseQRankSum=3.299;Dels=0.0;FS=36.6785;HaplotypeScore=11.131;MLEAC=1;MLEAF=0.5;MQ=40.565;MQRankSum=-4.497;QD=8.385;ReadPosRankSum=0.368;SOR=2.882;ClippingRankSum=-0.13	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3505:159:113:4173:57:2161:-111.78,0.0,-267.503:53:33:159:99,49:1472,0,3051:1:.:1:.:.:.:-0.00407189	0/1:119.3505:508:332:12491:161:6116:-273.395,0.0,-759.607:168:33:508:348,176:3704,0,9579:.:1:1:.:.:.:-0.014491
chr7	151945204	.	G	A	2633.77	REJECT	NS=2;DP=401;DPB=431.0;AC=2;AN=4;AF=0.5;RO=268;AO=163;PRO=0.0;PAO=0.0;QR=10225;QA=6292;PQR=0.0;PQA=0.0;SRF=146;SRR=122;SAF=8;SAR=155;SRP=7.67735;SAP=290.884;AB=0.37819;ABP=58.5567;RUN=1;RPP=70.1661;RPPR=4.59839;RPL=117.0;RPR=46.0;EPP=43.3091;EPPR=3.04271;DPRA=0.0;ODDS=178.764;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=31.9018;MQMR=48.7649;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=45;BaseQRankSum=2.052;Dels=0.0;FS=137.279;HaplotypeScore=5.8966;MLEAC=1;MLEAF=0.5;MQ=43.78;MQRankSum=-9.0655;QD=10.37;ReadPosRankSum=-0.69;SOR=5.5955;ClippingRankSum=-0.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:61:2317:44:1728:-92.7827,0.0,-169.938:41:40:101:59,38:1276,0,1999:1:.:1:.:.:.:-0.00407189	0/1:129.501:348:207:7908:119:4564:-222.341,0.0,-591.142:141:40:348:207,164:2953,0,7551:.:1:1:.:.:.:-0.014491
chr7	151945225	.	T	C	85.8389	REJECT	NS=2;DP=389;DPB=389.0;AC=1;AN=4;AF=0.25;RO=367;AO=22;PRO=0.0;PAO=0.0;QR=14158;QA=816;PQR=0.0;PQA=0.0;SRF=129;SRR=238;SAF=0;SAR=22;SRP=73.308;SAP=50.7827;AB=0.151163;ABP=93.9091;RUN=1;RPP=3.0103;RPPR=4.01024;RPL=11.0;RPR=11.0;EPP=3.0103;EPPR=3.06355;DPRA=0.0;ODDS=19.7651;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=34.6818;MQMR=40.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.577;FS=21.464;MLEAC=1;MLEAF=0.5;MQ=41.65;MQRankSum=-2.682;QD=2.95;ReadPosRankSum=-0.456;SOR=4.255;ClippingRankSum=-1.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:92.41945:82:73:2823:13:474:-15.7301,0.0,-190.082:13:16:82:65,13:258,0,2379:1:.:1:.:.:.:-0.00407189	0/0:160.002:303:294:11335:9:342:0.0,-57.1494,-867.975:9:3:303:.:.:.:.:0:.:.:.:-0.014491
chr7	151945256	.	G	A	49.77	PASS	SOMATIC;DP=353;AC=1;AN=4;AF=0.5;MQ0=67;BaseQRankSum=3.236;Dels=0.0;FS=43.694;HaplotypeScore=2.9304;MLEAC=1;MLEAF=0.5;MQ=35.85;MQRankSum=-3.06;QD=0.14;ReadPosRankSum=0.376;SOR=5.391	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00407189	0/1:324,29:353:78.0:78,0,8468:29:8:353:.:1:.:.:.:.:-0.014491
chr7	151945334	.	T	C	82.77	PASS	SOMATIC;DP=269;AC=1;AN=4;AF=0.5;MQ0=32;BaseQRankSum=-0.693;Dels=0.0;FS=42.288;HaplotypeScore=11.8359;MLEAC=1;MLEAF=0.5;MQ=46.89;MQRankSum=-7.341;QD=0.31;ReadPosRankSum=-1.108;SOR=6.274	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00407189	0/1:211,57:269:99.0:111,0,8097:57:21:268:.:1:.:.:.:.:-0.014491
chr7	151962113	.	G	T	40.77	PASS	DP=64;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.802;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=42.42;MQRankSum=-2.0;QD=0.64;ReadPosRankSum=-1.127;SOR=0.737;ClippingRankSum=-0.335	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56,8:64:69.0:69,0,1983:8:13:64:1:.:.:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.014491
chr7	151962176	.	T	A	1527.94	REJECT	NS=2;DP=434;DPB=489.0;AC=2;AN=4;AF=0.5;RO=353;AO=136;PRO=0.0;PAO=0.0;QR=13753;QA=5219;PQR=0.0;PQA=0.0;SRF=222;SRR=131;SAF=93;SAR=43;SRP=53.9507;SAP=42.9271;AB=0.278119;ABP=212.116;RUN=1;RPP=4.03217;RPPR=3.50857;RPL=64.0;RPR=72.0;EPP=21.4678;EPPR=43.3702;DPRA=0.0;ODDS=51.422;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=27.4265;MQMR=33.5071;PAIRED=0.970588;PAIREDR=0.985836;technology.ILLUMINA=1.0;MQ0=3;BaseQRankSum=-0.8065;Dels=0.0;FS=1.1955;HaplotypeScore=12.9869;MLEAC=1;MLEAF=0.5;MQ=38.53;MQRankSum=-4.0485;QD=3.5;ReadPosRankSum=1.155;SOR=0.889;ClippingRankSum=-0.829	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0085:92:83:3232:22:837:-23.5553,0.0,-179.417:19:21:92:62,17:219,0,2033:1:.:1:.:.:.:-0.00407189	0/1:118.0085:382:270:10521:114:4382:-141.045,0.0,-589.056:113:29:382:268,112:1774,0,7316:.:1:1:.:.:.:-0.014491
chr7	151970775	.	C	G	8.45592	REJECT	SOMATIC;NS=2;DP=358;DPB=358.0;AC=1;AN=4;AF=0.25;RO=301;AO=56;PRO=0.0;PAO=0.0;QR=11584;QA=2127;PQR=0.0;PQA=0.0;SRF=244;SRR=57;SAF=48;SAR=8;SRP=255.283;SAP=65.0524;AB=0.162791;ABP=257.83;RUN=1;RPP=4.40625;RPPR=37.3571;RPL=31.0;RPR=25.0;EPP=6.88793;EPPR=6.19176;DPRA=0.0;ODDS=1.78129;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=22.1071;MQMR=46.5781;PAIRED=1.0;PAIREDR=0.990033;technology.ILLUMINA=1.0;MQ0=16;BaseQRankSum=0.984;Dels=0.0;FS=12.483;HaplotypeScore=14.1037;MLEAC=1;MLEAF=0.5;MQ=46.01;MQRankSum=-7.282;QD=0.82;ReadPosRankSum=1.506;SOR=2.299	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:19.9768:100:86:3339:14:540:0.0,-3.26473,-223.171:14:14:100:.:.:.:.:0:.:.:.:-0.00407189	0/1:53.72796:266:215:8245:42:1587:-14.5874,0.0,-595.406:50:18:265:215,58:254,0,7499:.:1:1:.:.:.:-0.014491
chr7	151970777	.	G	A	.	PASS	SOMATIC;AC=1;AN=3;VT=SNP	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:103,0:.:98:0.0:0:0:0:103:.:.:.:.:.:0:-0.00407189	0/1:241,8:37.0:250:0.032:2:8:3:249:.:.:.:.:.:1:-0.014491
chr7	151970856	.	T	A	9382.96	REJECT	NS=2;DP=484;DPB=542.5;AC=2;AN=4;AF=0.5;RO=85;AO=425;PRO=6.0;PAO=8.0;QR=3267;QA=12170;PQR=205.0;PQA=277.0;SRF=43;SRR=42;SAF=226;SAR=199;SRP=3.03585;SAP=6.73501;AB=0.798872;ABP=415.77;RUN=1;RPP=15.2778;RPPR=3.03585;RPL=237.0;RPR=188.0;EPP=34.8977;EPPR=6.10145;DPRA=0.0;ODDS=84.335;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=2;MEANALT=3.5;LEN=1;MQM=34.2518;MQMR=51.6235;PAIRED=0.992941;PAIREDR=0.976471;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=8;BaseQRankSum=-0.4265;Dels=0.0;FS=0.357;HaplotypeScore=14.3877;MLEAC=1;MLEAF=0.5;MQ=42.585;MQRankSum=-7.905;QD=24.615;ReadPosRankSum=0.962;SOR=0.75;ClippingRankSum=0.656	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.512:103:18:695:86:2500:-189.741,0.0,-36.7613:79:77:102:19,73:2532,0,502:1:.:1:.:.:.:-0.00407189	0/1:117.512:427:67:2572:339:9670:-759.892,0.0,-130.968:352:83:424:71,366:9650,0,1973:.:1:1:.:.:.:-0.014491
chr7	151970856	.	TGCC	AGCT	9382.96	REJECT	NS=2;DP=532;DPB=542.5;AC=2;AN=2;AF=0.0;RO=85;AO=15;PRO=6.0;PAO=6.0;QR=3267;QA=588;PQR=205.0;PQA=212.0;SRF=43;SRR=42;SAF=8;SAR=7;SRP=3.03585;SAP=3.15506;AB=0.0281955;ABP=1031.62;RUN=1;RPP=3.15506;RPPR=3.03585;RPL=8.0;RPR=7.0;EPP=4.31318;EPPR=6.10145;DPRA=0.0;ODDS=84.335;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=2;MEANALT=3.5;LEN=4;MQM=30.6667;MQMR=51.6235;PAIRED=1.0;PAIREDR=0.976471;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.024:114:18:695:9:352:-189.741,-172.949,-234.091:9:8:113:.:.:1:.:.:.:-0.00407189	./1:136.024:418:67:2572:6:236:-759.892,-712.196,-934.936:6:1:412:.:.:1:.:.:.:-0.014491
chr7	151970931	.	G	A	2595.92	REJECT	NS=2;DP=234;DPB=242.0;AC=2;AN=4;AF=0.5;RO=72;AO=170;PRO=0.0;PAO=0.0;QR=2729;QA=6497;PQR=0.0;PQA=0.0;SRF=27;SRR=45;SAF=49;SAR=121;SRP=12.7819;SAP=69.2274;AB=0.702479;ABP=89.1872;RUN=1;RPP=48.9944;RPPR=7.35324;RPL=115.0;RPR=55.0;EPP=3.47014;EPPR=6.02623;DPRA=0.0;ODDS=143.574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=24.7765;MQMR=51.8611;PAIRED=1.0;PAIREDR=0.986111;technology.ILLUMINA=1.0;MQ0=58;BaseQRankSum=1.3635;Dels=0.0;FS=6.792;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=35.9;MQRankSum=-7.9005;QD=13.74;ReadPosRankSum=-1.2515;SOR=1.542;ClippingRankSum=-0.287	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8035:65:24:911:49:1865:-83.9902,0.0,-62.7565:42:64:65:22,35:979,0,698:1:.:1:.:.:.:-0.00407189	0/1:118.8035:198:48:1818:121:4632:-207.468,0.0,-116.455:150:75:198:48,179:2480,0,1619:.:1:1:.:.:.:-0.014491
chr7	152055766	.	G	GA	199.538	REJECT	NS=2;DP=183;DPB=234.875;AC=2;AN=4;AF=0.5;RO=118;AO=29;PRO=52.6667;PAO=33.6667;QR=4372;QA=684;PQR=1903.83;PQA=1124.83;SRF=17;SRR=101;SAF=1;SAR=28;SRP=132.857;SAP=57.5966;AB=0.15847;ABP=188.416;RUN=1;RPP=3.08518;RPPR=21.8543;RPL=14.0;RPR=15.0;EPP=3.68421;EPPR=3.08391;DPRA=0.0;ODDS=10.4373;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:43.6902:49:33:1214:7:183:-7.43714,0.0,-113.328:7:16:45:.:.:1:.:.:.:-0.00407189	0/1:160.002:134:85:3158:22:501:-23.8236,0.0,-320.187:22:18:120:.:.:1:.:.:.:-0.014491
chr7	152055766	.	GA	G	199.538	REJECT	NS=2;DP=183;DPB=234.875;AC=2;AN=2;AF=0.0;RO=118;AO=18;PRO=52.6667;PAO=23.6667;QR=4372;QA=501;PQR=1903.83;PQA=852.333;SRF=17;SRR=101;SAF=2;SAR=16;SRP=132.857;SAP=26.6552;AB=0.0983607;ABP=259.422;RUN=1;RPP=10.7311;RPPR=21.8543;RPL=13.0;RPR=5.0;EPP=4.9405;EPPR=3.08391;DPRA=0.0;ODDS=10.4373;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.6902:49:33:1214:5:157:-7.43714,-4.95478,-119.077:5:11:45:.:.:1:.:.:.:-0.00407189	./1:160.002:134:85:3158:13:344:-23.8236,-23.2142,-392.958:13:11:120:.:.:1:.:.:.:-0.014491
chr7	153023667	.	T	C	9850.08	REJECT	NS=2;DP=355;DPB=404.0;AC=2;AN=4;AF=0.5;RO=84;AO=320;PRO=0.0;PAO=0.0;QR=3228;QA=12286;PQR=0.0;PQA=0.0;SRF=49;SRR=35;SAF=182;SAR=138;SRP=8.07707;SAP=16.1477;AB=0.792079;ABP=302.372;RUN=1;RPP=4.34033;RPPR=3.1137;RPL=153.0;RPR=167.0;EPP=32.5695;EPPR=17.9004;DPRA=0.0;ODDS=129.662;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996875;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2965;Dels=0.0;FS=3.0165;HaplotypeScore=4.9942;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.339;QD=26.92;ReadPosRankSum=0.633;SOR=0.8095;ClippingRankSum=1.369	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:43:1656:54:2030:-156.452,0.0,-122.786:54:56:97:43,54:1929,0,1514:1:.:1:.:.:.:-0.00407189	0/1:129.501:306:41:1572:266:10256:-839.324,0.0,-58.2461:265:87:306:41,265:10507,0,856:.:1:1:.:.:.:-0.014491
chr7	155595590	.	G	C	95.7182	REJECT	NS=1;DP=69;DPB=70.25;AC=1;AN=3;AF=0.0;RO=57;AO=4;PRO=1.5;PAO=1.5;QR=1787;QA=44;PQR=17.5;PQA=17.5;SRF=39;SRR=18;SAF=4;SAR=0;SRP=19.8106;SAP=11.6962;AB=0.057971;ABP=120.112;RUN=1;RPP=11.6962;RPPR=39.6206;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=3.0484;DPRA=0.0;ODDS=22.0399;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=2;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:95.7182:69:57:1787:4:44:-14.6893,-26.0456,-170.926:4:6:66:.:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.
chr7	155595590	.	GGCT	CGCC	95.7182	REJECT	NS=1;DP=69;DPB=70.25;AC=1;AN=4;AF=0.5;RO=57;AO=5;PRO=1.5;PAO=0.0;QR=1787;QA=34;PQR=17.5;PQA=0.0;SRF=39;SRR=18;SAF=5;SAR=0;SRP=19.8106;SAP=13.8677;AB=0.0724638;ABP=112.56;RUN=1;RPP=6.91895;RPPR=39.6206;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=3.0484;DPRA=0.0;ODDS=22.0399;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=2;MEANALT=4.0;LEN=4;MQM=56.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:95.7182:69:57:1787:5:34:-14.6893,0.0,-150.053:5:8:66:.:.:1:.:.:.:-0.00407189	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.
chr7	157501344	.	T	C	8114.275	REJECT	NS=2;DP=216;DPB=243.0;AC=4;AN=4;AF=1.0;RO=0;AO=243;PRO=0.0;PAO=0.0;QR=0;QA=9273;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=161;SAR=82;SRP=0.0;SAP=58.7805;AB=0.0;ABP=0.0;RUN=1;RPP=121.19;RPPR=0.0;RPL=64.0;RPR=179.0;EPP=3.01924;EPPR=0.0;DPRA=0.0;ODDS=36.7591;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995885;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9464;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.445;SOR=1.5445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.8415:52:0:0:52:1981:-178.471,-14.0892,0.0:52:100:52:0,52:2161,156,0:1:.:1:.:.:.:-0.00407189	1/1:129.501:190:0:0:191:7292:-655.986,-51.7096,0.0:190:100:190:0,190:8130,563,0:.:1:1:.:.:.:0.000252618
chr8	4500949	.	C	A	13555.75	REJECT	NS=2;DP=356;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=405;PRO=0.0;PAO=0.0;QR=0;QA=15613;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=190;SRP=0.0;SAP=6.36134;AB=0.0;ABP=0.0;RUN=1;RPP=84.1269;RPPR=0.0;RPL=141.0;RPR=264.0;EPP=81.5104;EPPR=0.0;DPRA=0.0;ODDS=64.8392;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990123;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9638;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.055;SOR=0.8765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:97:3708:-333.776,-26.2842,0.0:96:100:96:0,96:3866,288,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:307:0:0:308:11905:-1070.81,-83.4363,0.0:307:100:307:0,307:13301,918,0:.:1:1:.:.:.:-0.0446778
chr8	8119486	.	T	C	14100.45	REJECT	NS=2;DP=380;DPB=432.0;AC=4;AN=4;AF=1.0;RO=1;AO=429;PRO=0.0;PAO=0.0;QR=16;QA=16245;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=275;SAR=154;SRP=5.18177;SAP=77.1188;AB=0.0;ABP=0.0;RUN=1;RPP=3.62277;RPPR=5.18177;RPL=209.0;RPR=220.0;EPP=77.1188;EPPR=5.18177;DPRA=0.0;ODDS=68.5533;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.965;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.721;Dels=0.0;FS=0.0;HaplotypeScore=5.799;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.154;QD=26.49;ReadPosRankSum=1.7;SOR=0.934	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.768:101:0:0:103:3864:-347.77,-27.8973,0.0:101:100:101:0,99:3853,297,0:1:.:1:.:.:.:-0.000206731	1/1:127.768:329:1:16:326:12381:-1112.13,-87.079,0.0:326:100:327:1,326:13814,960,0:.:1:1:.:.:.:-0.0446778
chr8	19528128	.	C	T	1092.28	REJECT	NS=1;DP=100;DPB=100.0;AC=1;AN=4;AF=0.5;RO=50;AO=50;PRO=0.0;PAO=0.0;QR=1711;QA=1656;PQR=0.0;PQA=0.0;SRF=14;SRR=36;SAF=14;SAR=36;SRP=24.0302;SAP=24.0302;AB=0.5;ABP=3.0103;RUN=1;RPP=53.2147;RPPR=53.2147;RPL=42.0;RPR=8.0;EPP=11.5225;EPPR=17.0814;DPRA=0.0;ODDS=251.506;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.62;PAIRED=0.98;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.724;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.715;QD=15.44;ReadPosRankSum=-0.578;SOR=0.662;ClippingRankSum=0.387	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:50:1711:50:1656:-122.423,0.0,-127.773:45:49:91:42,41:1325,0,1410:1:.:1:.:.:.:-0.000206731	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0446778
chr8	27255080	.	A	G	849.038	REJECT;LowQual	NS=2;DP=249;DPB=277.0;AC=2;AN=4;AF=0.375;RO=227;AO=49;PRO=0.0;PAO=0.0;QR=8497;QA=1815;PQR=0.0;PQA=0.0;SRF=137;SRR=90;SAF=32;SAR=17;SRP=24.1415;SAP=12.9813;AB=0.571429;ABP=5.49198;RUN=1;RPP=26.4533;RPPR=96.7663;RPL=13.0;RPR=36.0;EPP=3.05462;EPPR=3.09639;DPRA=0.0;ODDS=10.8791;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.699;Dels=0.0;FS=3.675;HaplotypeScore=7.793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1315;QD=9.945;ReadPosRankSum=0.066;SOR=1.04;ClippingRankSum=0.025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:24:893:32:1181:-91.2167,0.0,-65.2854:31:56:55:24,31:1117,0,791:1:.:1:.:.:.:-0.000206731	0/1:48.1237:221:203:7604:17:634:0.0,-2.51803,-627.025:17:8:220:203,17:49,0,7848:.:1:0:.:.:.:-0.0446778
chr8	27255128	.	T	C	2040.925	REJECT	NS=2;DP=361;DPB=411.0;AC=2;AN=4;AF=0.5;RO=314;AO=97;PRO=0.0;PAO=0.0;QR=11699;QA=3638;PQR=0.0;PQA=0.0;SRF=167;SRR=147;SAF=50;SAR=47;SRP=5.77651;SAP=3.21178;AB=0.23601;ABP=251.8;RUN=1;RPP=17.0017;RPPR=4.00613;RPL=36.0;RPR=61.0;EPP=4.82359;EPPR=6.35741;DPRA=0.0;ODDS=95.16;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4665;Dels=0.0;FS=1.3425;HaplotypeScore=6.8102;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.114;QD=11.14;ReadPosRankSum=-1.7305;SOR=0.633;ClippingRankSum=-2.344	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:39:1467:60:2228:-173.744,0.0,-105.232:59:60:98:39,59:2017,0,1234:1:.:1:.:.:.:-0.000206731	0/1:129.501:312:275:10232:37:1410:-42.7423,0.0,-835.914:37:12:312:275,37:648,0,10517:.:1:1:.:.:.:-0.0446778
chr8	27255146	.	G	A	2397.8	REJECT	NS=2;DP=382;DPB=440.0;AC=2;AN=4;AF=0.5;RO=331;AO=109;PRO=0.0;PAO=0.0;QR=12674;QA=4146;PQR=0.0;PQA=0.0;SRF=165;SRR=166;SAF=55;SAR=54;SRP=3.01686;SAP=3.03022;AB=0.247727;ABP=246.235;RUN=1;RPP=33.3113;RPPR=3.54169;RPL=35.0;RPR=74.0;EPP=11.7958;EPPR=9.31479;DPRA=0.0;ODDS=122.75;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981651;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1725;Dels=0.0;FS=2.806;HaplotypeScore=5.8042;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.07;QD=11.62;ReadPosRankSum=0.4795;SOR=0.696;ClippingRankSum=0.745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.466:114:47:1819:68:2558:-199.069,0.0,-132.551:67:59:114:46,67:2381,0,1553:1:.:1:.:.:.:-0.000206731	0/1:119.466:325:284:10855:41:1588:-54.8146,0.0,-888.335:41:13:325:284,41:814,0,11181:.:1:1:.:.:.:-0.0446778
chr8	27255263	.	A	G	1767.195	REJECT	NS=2;DP=342;DPB=390.0;AC=2;AN=4;AF=0.5;RO=303;AO=87;PRO=0.0;PAO=0.0;QR=11654;QA=3358;PQR=0.0;PQA=0.0;SRF=130;SRR=173;SAF=41;SAR=46;SRP=16.2613;SAP=3.63429;AB=0.223077;ABP=262.785;RUN=1;RPP=3.03526;RPPR=3.0748;RPL=43.0;RPR=44.0;EPP=5.03202;EPPR=3.59079;DPRA=0.0;ODDS=111.362;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3745;Dels=0.0;FS=4.0575;HaplotypeScore=4.898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.424;QD=9.845;ReadPosRankSum=1.4855;SOR=0.7275;ClippingRankSum=-0.295	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.876:94:45:1718:50:1927:-147.721,0.0,-128.897:49:52:94:45,49:1655,0,1576:1:.:1:.:.:.:-0.000206731	0/1:119.876:295:258:9936:37:1431:-48.8133,0.0,-813.814:37:13:295:258,37:729,0,10226:.:1:1:.:.:.:-0.0446778
chr8	27277537	.	G	A	11000.5	REJECT	NS=2;DP=392;DPB=449.0;AC=2;AN=4;AF=0.5;RO=84;AO=365;PRO=0.0;PAO=0.0;QR=3193;QA=13666;PQR=0.0;PQA=0.0;SRF=46;SRR=38;SAF=194;SAR=171;SRP=4.66476;SAP=6.15745;AB=0.812918;ABP=384.885;RUN=1;RPP=3.73016;RPPR=6.73282;RPL=177.0;RPR=188.0;EPP=12.0591;EPPR=4.66476;DPRA=0.0;ODDS=91.7242;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99726;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.254;Dels=0.0;FS=2.323;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.636;QD=26.855;ReadPosRankSum=-0.1695;SOR=0.749;ClippingRankSum=-0.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:45:1730:69:2573:-200.698,0.0,-124.812:68:60:113:45,67:2274,0,1530:1:.:1:.:.:.:-0.000206731	0/1:129.501:335:39:1463:296:11093:-907.081,0.0,-40.9291:296:88:335:39,296:11366,0,634:.:1:1:.:.:.:-0.0446778
chr8	27291557	.	T	C	10579.349999999999	REJECT	NS=2;DP=284;DPB=320.0;AC=4;AN=4;AF=1.0;RO=0;AO=319;PRO=0.0;PAO=0.0;QR=0;QA=12068;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=213;SAR=106;SRP=0.0;SAP=80.9451;AB=0.0;ABP=0.0;RUN=1;RPP=93.0345;RPPR=0.0;RPL=102.0;RPR=217.0;EPP=4.1607;EPPR=0.0;DPRA=0.0;ODDS=48.548;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996865;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.875;SOR=1.4995	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.802:69:0:0:71:2610:-235.012,-19.2091,0.0:69:100:69:0,67:2718,200,0:1:.:1:.:.:.:-0.000206731	1/1:122.802:249:0:0:248:9458:-850.743,-67.139,0.0:248:100:248:0,248:10542,731,0:.:1:1:.:.:.:-0.0446778
chr8	27293335	.	G	T	1225.1799999999998	REJECT	NS=2;DP=318;DPB=358.0;AC=2;AN=4;AF=0.5;RO=285;AO=73;PRO=0.0;PAO=0.0;QR=11019;QA=2747;PQR=0.0;PQA=0.0;SRF=112;SRR=173;SAF=27;SAR=46;SRP=31.3613;SAP=13.7487;AB=0.203911;ABP=275.621;RUN=1;RPP=3.75395;RPPR=9.41805;RPL=39.0;RPR=34.0;EPP=5.41974;EPPR=33.2509;DPRA=0.0;ODDS=121.953;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992982;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.3535;Dels=0.0;FS=1.2005;HaplotypeScore=4.9459;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.697;QD=8.33;ReadPosRankSum=-0.6085;SOR=0.6685;ClippingRankSum=1.149	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:45:1747:35:1303:-95.641,0.0,-135.6:32:42:76:43,30:1044,0,1603:1:.:1:.:.:.:-0.000206731	0/1:129.501:278:240:9272:38:1444:-54.5957,0.0,-758.688:38:14:278:240,38:795,0,9548:.:1:1:.:.:.:-0.0446778
chr8	27293865	.	C	T	7551.78	REJECT	NS=2;DP=282;DPB=322.0;AC=2;AN=4;AF=0.5;RO=74;AO=248;PRO=0.0;PAO=0.0;QR=2858;QA=9535;PQR=0.0;PQA=0.0;SRF=40;SRR=34;SAF=115;SAR=133;SRP=4.06669;SAP=5.84722;AB=0.770186;ABP=207.183;RUN=1;RPP=50.9578;RPPR=17.2129;RPL=161.0;RPR=87.0;EPP=43.4978;EPPR=12.5178;DPRA=0.0;ODDS=118.164;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995968;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.733;Dels=0.0;FS=2.9165;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5005;QD=25.13;ReadPosRankSum=-0.634;SOR=0.513;ClippingRankSum=-0.368	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4925:79:40:1532:39:1475:-111.389,0.0,-116.529:39:49:79:40,39:1319,0,1413:1:.:1:.:.:.:-0.000206731	0/1:119.4925:243:34:1326:209:8060:-659.193,0.0,-53.4598:209:86:243:34,209:8272,0,766:.:1:1:.:.:.:-0.0446778
chr8	27308538	.	G	A	10601.1	REJECT	NS=2;DP=397;DPB=452.0;AC=2;AN=4;AF=0.5;RO=100;AO=352;PRO=0.0;PAO=0.0;QR=3750;QA=13222;PQR=0.0;PQA=0.0;SRF=47;SRR=53;SAF=189;SAR=163;SRP=3.79203;SAP=7.18051;AB=0.778761;ABP=308.093;RUN=1;RPP=3.0103;RPPR=3.09716;RPL=176.0;RPR=176.0;EPP=3.6272;EPPR=4.40004;DPRA=0.0;ODDS=153.04;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994318;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.295;Dels=0.0;FS=5.4235;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7635;QD=25.185;ReadPosRankSum=1.532;SOR=0.8405;ClippingRankSum=0.258	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.063:108:52:1974:57:2191:-167.667,0.0,-148.126:57:52:108:51,57:1946,0,1815:1:.:1:.:.:.:-0.000206731	0/1:120.063:343:48:1776:295:11031:-899.338,0.0,-66.9452:295:86:343:48,295:11213,0,955:.:1:1:.:.:.:-0.0446778
chr8	27308585	.	A	C	1714.67	REJECT	NS=2;DP=362;DPB=411.0;AC=2;AN=4;AF=0.5;RO=323;AO=88;PRO=0.0;PAO=0.0;QR=12375;QA=3348;PQR=0.0;PQA=0.0;SRF=144;SRR=179;SAF=39;SAR=49;SRP=11.2458;SAP=5.47788;AB=0.214112;ABP=294.785;RUN=1;RPP=7.84676;RPPR=23.3468;RPL=51.0;RPR=37.0;EPP=3.40511;EPPR=38.8362;DPRA=0.0;ODDS=120.774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993808;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2015;Dels=0.0;FS=4.6185;HaplotypeScore=5.8228;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6555;QD=9.44;ReadPosRankSum=0.609;SOR=0.935;ClippingRankSum=-0.588	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:50:1938:48:1818:-137.094,0.0,-147.886:47:48:97:50,47:1621,0,1795:1:.:1:.:.:.:-0.000206731	0/1:129.501:313:273:10437:40:1530:-52.8422,0.0,-854.004:40:13:313:273,40:799,0,10744:.:1:1:.:.:.:-0.0446778
chr8	27311703	.	T	C	14205.95	REJECT	NS=2;DP=378;DPB=437.0;AC=4;AN=4;AF=1.0;RO=0;AO=437;PRO=0.0;PAO=0.0;QR=0;QA=16567;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=237;SAR=200;SRP=0.0;SAP=9.81292;AB=0.0;ABP=0.0;RUN=1;RPP=7.78555;RPPR=0.0;RPL=203.0;RPR=234.0;EPP=6.11595;EPPR=0.0;DPRA=0.0;ODDS=76.3819;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990847;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9436;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.345;SOR=0.8395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:117:4408:-396.308,-31.2972,0.0:113:100:113:0,110:4431,330,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:320:0:0:320:12159:-1093.63,-86.6395,0.0:320:100:320:0,320:13598,948,0:.:1:1:.:.:.:-0.0446778
chr8	27312040	.	C	T	9957.48	REJECT	NS=2;DP=366;DPB=415.0;AC=2;AN=4;AF=0.5;RO=86;AO=329;PRO=0.0;PAO=0.0;QR=3289;QA=12409;PQR=0.0;PQA=0.0;SRF=48;SRR=38;SAF=185;SAR=144;SRP=5.53527;SAP=14.1053;AB=0.792771;ABP=311.982;RUN=1;RPP=8.56109;RPPR=3.0103;RPL=150.0;RPR=179.0;EPP=7.82186;EPPR=3.41429;DPRA=0.0;ODDS=68.1335;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987842;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.973;Dels=0.0;FS=5.5495;HaplotypeScore=6.8542;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.13;QD=25.11;ReadPosRankSum=-0.21;SOR=0.8205;ClippingRankSum=0.7	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.403:97:52:2000:46:1697:-126.208,0.0,-153.494:46:47:97:50,46:1533,0,1711:1:.:1:.:.:.:-0.000206731	0/1:121.403:317:34:1289:283:10712:-878.055,0.0,-30.1372:283:89:317:34,283:11014,0,511:.:1:1:.:.:.:-0.0446778
chr8	27312135	.	G	A	9040.56	REJECT	NS=2;DP=315;DPB=356.0;AC=2;AN=4;AF=0.5;RO=61;AO=295;PRO=0.0;PAO=0.0;QR=2356;QA=11327;PQR=0.0;PQA=0.0;SRF=22;SRR=39;SAF=88;SAR=207;SRP=13.2981;SAP=107.248;AB=0.828652;ABP=337.002;RUN=1;RPP=12.0274;RPPR=13.2981;RPL=165.0;RPR=130.0;EPP=9.20084;EPPR=4.7546;DPRA=0.0;ODDS=32.754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2935;Dels=0.0;FS=2.1565;HaplotypeScore=4.965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0325;QD=27.815;ReadPosRankSum=-0.199;SOR=0.987;ClippingRankSum=0.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.234:80:35:1347:46:1773:-137.667,0.0,-99.329:46:57:80:34,46:1610,0,1232:1:.:1:.:.:.:-0.000206731	0/1:116.8195:275:26:1009:249:9554:-784.897,0.0,-16.2841:249:91:275:26,249:9892,0,314:.:1:1:.:.:.:-0.0446778
chr8	27315876	.	A	G	14700.9	REJECT	NS=2;DP=390;DPB=441.0;AC=4;AN=4;AF=1.0;RO=2;AO=438;PRO=0.0;PAO=0.0;QR=75;QA=16770;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=239;SAR=199;SRP=7.35324;SAP=10.9426;AB=0.0;ABP=0.0;RUN=1;RPP=3.98201;RPPR=3.0103;RPL=212.0;RPR=226.0;EPP=37.9918;EPPR=3.0103;DPRA=0.0;ODDS=66.3124;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995434;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.966;Dels=0.0;FS=3.1605;HaplotypeScore=6.8482;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.263;QD=30.54;ReadPosRankSum=0.59;SOR=0.8025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:101:3767:-338.619,-26.924,0.0:99:100:99:0,98:4086,294,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:340:2:75:337:13003:-1162.74,-85.0554,0.0:337:99:339:2,337:14491,927,0:.:1:1:.:.:.:-0.0446778
chr8	27315900	.	A	G	14661.95	REJECT	NS=2;DP=385;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=441;PRO=0.0;PAO=0.0;QR=0;QA=16888;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=220;SRP=0.0;SAP=3.01522;AB=0.0;ABP=0.0;RUN=1;RPP=3.40914;RPPR=0.0;RPL=225.0;RPR=216.0;EPP=45.5977;EPPR=0.0;DPRA=0.0;ODDS=73.5067;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995465;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9118;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.91;SOR=0.812	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:111:4163:-374.666,-30.0485,0.0:110:100:110:0,109:4519,327,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:330:0:0:330:12725:-1144.53,-89.3849,0.0:330:100:330:0,330:14246,984,0:.:1:1:.:.:.:-0.0446778
chr8	28561355	.	C	G	5173.555	REJECT	NS=2;DP=314;DPB=364.0;AC=2;AN=4;AF=0.5;RO=175;AO=188;PRO=0.0;PAO=0.0;QR=6653;QA=7128;PQR=0.0;PQA=0.0;SRF=127;SRR=48;SAF=132;SAR=56;SRP=80.4512;SAP=69.7253;AB=0.516484;ABP=3.86934;RUN=1;RPP=39.2323;RPPR=52.2593;RPL=66.0;RPR=122.0;EPP=7.63045;EPPR=6.59633;DPRA=0.0;ODDS=291.566;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994681;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.064;Dels=0.0;FS=2.424;HaplotypeScore=7.7303;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.401;QD=18.41;ReadPosRankSum=0.589;SOR=0.7285;ClippingRankSum=-0.732	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:47:1750:52:1880:-142.426,0.0,-130.733:52:53:97:44,52:1720,0,1523:1:.:1:.:.:.:-0.000206731	0/1:129.501:265:128:4903:136:5248:-400.562,0.0,-369.507:136:52:264:128,136:5115,0,4684:.:1:1:.:.:.:-0.0446778
chr8	30027689	.	C	CA	917.348	REJECT	NS=2;DP=215;DPB=269.9;AC=2;AN=2;AF=0.0;RO=112;AO=19;PRO=32.1667;PAO=30.1667;QR=4064;QA=554;PQR=1127.17;PQA=1027.17;SRF=83;SRR=29;SAF=13;SAR=6;SRP=59.5461;SAP=8.61041;AB=0.0883721;ABP=319.429;RUN=1;RPP=3.12459;RPPR=37.211;RPL=9.0;RPR=10.0;EPP=3.12459;EPPR=4.25114;DPRA=0.0;ODDS=64.0096;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=59.5789;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:142.918:52:27:1000:5:157:-32.5558,-27.3814,-111.669:5:10:48:.:.:1:.:.:.:-0.000206731	./1:142.918:163:85:3064:14:397:-67.6155,-59.3438,-314.297:14:10:142:.:.:1:.:.:.:-0.0446778
chr8	30027689	.	CA	C	661.039	REJECT	NS=2;DP=199;DPB=269.9;AC=2;AN=4;AF=0.5;RO=112;AO=48;PRO=32.1667;PAO=22.1667;QR=4064;QA=1688;PQR=1127.17;PQA=774.667;SRF=83;SRR=29;SAF=33;SAR=15;SRP=59.5461;SAP=17.6677;AB=0.223256;ABP=146.035;RUN=1;RPP=21.1059;RPPR=37.211;RPL=14.0;RPR=34.0;EPP=3.19126;EPPR=4.25114;DPRA=0.0;ODDS=64.0096;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.4167;MQMR=60.0;PAIRED=0.979167;PAIREDR=0.982143;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.047;FS=2.653;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.2895;QD=2.975;RPA=15,14;RU=A;ReadPosRankSum=0.649;SOR=0.3565;STR;ClippingRankSum=1.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.959:48:27:1000:15:503:-32.5558,0.0,-93.9969:15:32:46:30,15:225,0,537:1:.:1:.:.:.:-0.000206731	0/1:120.959:173:85:3064:33:1185:-67.6155,0.0,-319.084:40:25:155:121,47:442,0,1967:.:1:1:.:.:.:-0.0446778
chr8	30027689	.	CAA	C	917.348	REJECT	NS=2;DP=215;DPB=269.9;AC=2;AN=2;AF=0.0;RO=112;AO=11;PRO=32.1667;PAO=20.5;QR=4064;QA=370;PQR=1127.17;PQA=717.0;SRF=83;SRR=29;SAF=6;SAR=5;SRP=59.5461;SAP=3.20771;AB=0.0511628;ABP=379.22;RUN=1;RPP=3.20771;RPPR=37.211;RPL=5.0;RPR=6.0;EPP=7.94546;EPPR=4.25114;DPRA=0.0;ODDS=64.0096;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:142.918:52:27:1000:1:40:-32.5558,-38.7186,-144.587:1:2:48:.:.:1:.:.:.:-0.000206731	./1:142.918:163:85:3064:10:330:-67.6155,-73.9546,-433.557:10:7:142:.:.:1:.:.:.:-0.0446778
chr8	30921935	.	G	A	7144.595	REJECT	NS=2;DP=319;DPB=371.0;AC=3;AN=4;AF=0.75;RO=109;AO=262;PRO=0.0;PAO=0.0;QR=4187;QA=10149;PQR=0.0;PQA=0.0;SRF=41;SRR=68;SAF=88;SAR=174;SRP=17.5333;SAP=64.3088;AB=0.59176;ABP=22.5373;RUN=1;RPP=12.5913;RPPR=4.62396;RPL=148.0;RPR=114.0;EPP=3.83911;EPPR=3.03022;DPRA=0.0;ODDS=65.8886;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992366;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4;Dels=0.0;FS=1.823;HaplotypeScore=6.7706;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.901;QD=25.985;ReadPosRankSum=0.926;SOR=1.193	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:104:4030:-362.721,-28.1891,0.0:102:100:102:0,101:4187,304,0:1:.:1:.:.:.:-0.000206731	0/1:129.501:267:109:4187:158:6119:-478.08,0.0,-304.296:158:59:267:109,158:6040,0,3874:.:1:1:.:.:.:-0.0446778
chr8	30921970	.	A	T	4674.35	REJECT	NS=2;DP=223;DPB=260.0;AC=3;AN=4;AF=0.75;RO=75;AO=184;PRO=0.0;PAO=0.0;QR=2873;QA=6791;PQR=0.0;PQA=0.0;SRF=25;SRR=50;SAF=50;SAR=134;SRP=21.1059;SAP=86.2815;AB=0.59893;ABP=18.9073;RUN=1;RPP=34.9215;RPPR=15.7786;RPL=118.0;RPR=66.0;EPP=3.76559;EPPR=3.03925;DPRA=0.0;ODDS=45.8863;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98913;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.492;Dels=0.0;FS=2.4725;HaplotypeScore=4.888;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.919;QD=25.99;ReadPosRankSum=-2.562;SOR=1.4425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.7885:71:0:0:72:2694:-242.589,-19.5022,0.0:71:100:71:0,70:2921,210,0:1:.:1:.:.:.:-0.000206731	0/1:118.7885:187:75:2873:112:4097:-317.957,0.0,-207.916:112:60:187:75,112:3946,0,2656:.:1:1:.:.:.:-0.0446778
chr8	30924557	.	C	T	11867.099999999999	REJECT	NS=2;DP=309;DPB=357.0;AC=4;AN=4;AF=1.0;RO=0;AO=357;PRO=0.0;PAO=0.0;QR=0;QA=13903;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=113;SRP=0.0;SAP=107.393;AB=0.0;ABP=0.0;RUN=1;RPP=44.913;RPPR=0.0;RPL=137.0;RPR=220.0;EPP=14.2569;EPPR=0.0;DPRA=0.0;ODDS=63.0127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994398;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8994;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.255;SOR=1.6645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:94:3661:-329.559,-25.491,0.0:92:100:92:0,91:3868,274,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:262:0:0:263:10242:-921.203,-71.23,0.0:262:100:262:0,262:11456,783,0:.:1:1:.:.:.:-0.0446778
chr8	30925751	.	T	A	5078.695	REJECT	NS=2;DP=229;DPB=266.0;AC=3;AN=4;AF=0.75;RO=77;AO=189;PRO=0.0;PAO=0.0;QR=2969;QA=7313;PQR=0.0;PQA=0.0;SRF=56;SRR=21;SAF=145;SAR=44;SRP=37.5565;SAP=120.212;AB=0.598958;ABP=19.3416;RUN=1;RPP=115.617;RPPR=17.9286;RPL=45.0;RPR=144.0;EPP=7.15793;EPPR=6.42261;DPRA=0.0;ODDS=47.1804;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987013;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.417;Dels=0.0;FS=2.027;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.312;QD=26.93;ReadPosRankSum=-0.599;SOR=1.5925	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:73:0:0:74:2859:-257.439,-20.0642,0.0:73:100:73:0,73:3021,220,0:1:.:1:.:.:.:-0.000206731	0/1:129.501:192:77:2969:115:4454:-348.675,0.0,-215.085:115:60:192:77,115:4425,0,2758:.:1:1:.:.:.:-0.0446778
chr8	30933816	.	C	CT	448.309	REJECT	NS=2;DP=233;DPB=263.4;AC=2;AN=3;AF=0.25;RO=166;AO=20;PRO=32.5;PAO=17.5;QR=6242;QA=703;PQR=1156.67;PQA=613.667;SRF=43;SRR=123;SAF=8;SAR=12;SRP=86.7297;SAP=4.74748;AB=0.0858369;ABP=350.157;RUN=1;RPP=18.6449;RPPR=86.7297;RPL=16.0;RPR=4.0;EPP=4.74748;EPPR=3.06262;DPRA=0.0;ODDS=2.15673;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.95;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:9.82897:64:51:1904:6:217:-2.72802,0.0,-171.327:6:10:61:.:.:1:.:.:.:-0.000206731	./1:160.002:169:115:4338:14:486:-52.0094,-43.3389,-430.852:14:9:156:.:.:1:.:.:.:-0.0446778
chr8	30933816	.	CT	C	448.309	REJECT	NS=2;DP=233;DPB=263.4;AC=2;AN=3;AF=0.25;RO=166;AO=31;PRO=32.5;PAO=17.0;QR=6242;QA=1134;PQR=1156.67;PQA=603.667;SRF=43;SRR=123;SAF=5;SAR=26;SRP=86.7297;SAP=33.9012;AB=0.133047;ABP=275.525;RUN=1;RPP=18.771;RPPR=86.7297;RPL=23.0;RPR=8.0;EPP=4.76149;EPPR=3.06262;DPRA=0.0;ODDS=2.15673;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.82897:64:51:1904:4:136:-2.72802,-3.50941,-175.108:4:7:61:.:.:1:.:.:.:-0.000206731	0/1:160.002:169:115:4338:27:998:-52.0094,0.0,-413.757:27:17:156:.:.:1:.:.:.:-0.0446778
chr8	30941317	.	T	C	535.595	PASS	SOMATIC;NS=2;DP=273;DPB=273.0;AC=1;AN=3;AF=0.25;RO=214;AO=59;PRO=0.0;PAO=0.0;QR=8315;QA=2260;PQR=0.0;PQA=0.0;SRF=72;SRR=142;SAF=18;SAR=41;SRP=52.7309;SAP=22.4799;AB=0.282297;ABP=89.0484;RUN=1;RPP=26.0132;RPPR=92.6698;RPL=42.0;RPR=17.0;EPP=7.46366;EPPR=9.86972;DPRA=3.26562;ODDS=40.9566;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=25.3729;MQMR=48.8411;PAIRED=1.0;PAIREDR=0.995327;technology.ILLUMINA=1.0;MQ0=11;VT=SNP;BaseQRankSum=1.429;Dels=0.0;FS=1.283;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=43.92;MQRankSum=-9.99;QD=3.28;ReadPosRankSum=-0.304;SOR=0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:63:64:2508:0:0:0.0,-17.3613,-217.067:0:0:63:63,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:129.501:209:150:5807:59:2260:-63.1272,0.0,-447.217:59:30:209:143,64:38.0:0.297:2:747,0,5769:.:1:1:.:.:1:-0.0446778
chr8	30946403	.	C	A	6135.25	REJECT	NS=2;DP=274;DPB=317.0;AC=3;AN=4;AF=0.75;RO=89;AO=228;PRO=0.0;PAO=0.0;QR=3371;QA=8678;PQR=0.0;PQA=0.0;SRF=60;SRR=29;SAF=147;SAR=81;SRP=26.4573;SAP=44.4969;AB=0.616379;ABP=30.3035;RUN=1;RPP=58.0209;RPPR=20.7969;RPL=76.0;RPR=152.0;EPP=14.02;EPPR=8.49998;DPRA=0.0;ODDS=54.0369;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986842;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.446;Dels=0.0;FS=1.2105;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.804;QD=28.265;ReadPosRankSum=0.398;SOR=1.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:85:0:0:85:3254:-292.955,-23.042,0.0:85:100:85:0,85:3557,255,0:1:.:1:.:.:.:-0.000206731	0/1:129.501:231:89:3371:143:5424:-425.097,0.0,-240.44:142:61:231:89,142:5284,0,3080:.:1:1:.:.:.:-0.0446778
chr8	30954270	.	G	T	91.4608	REJECT	NS=2;DP=271;DPB=281.4;AC=2;AN=2;AF=0.0;RO=225;AO=14;PRO=9.5;PAO=9.5;QR=7660;QA=227;PQR=241.0;PQA=241.0;SRF=156;SRR=69;SAF=13;SAR=1;SRP=76.0586;SAP=25.3454;AB=0.0516605;ABP=476.159;RUN=1;RPP=5.49198;RPPR=109.412;RPL=9.0;RPR=5.0;EPP=8.59409;EPPR=3.09716;DPRA=0.0;ODDS=1.62468;GTI=0;TYPE=snp;CIGAR=1X4M;NUMALT=3;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=59.9556;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.90617:74:61:2069:6:105:-11.9307,-20.6283,-188.901:6:8:73:.:.:1:.:.:.:-0.000206731	./1:17.9974:197:164:5591:8:122:-8.86387,-44.4514,-501.129:8:4:196:.:.:1:.:.:.:-0.0446778
chr8	30954270	.	GTTTG	TTTTT	91.4608	REJECT	NS=2;DP=271;DPB=281.4;AC=2;AN=3;AF=0.25;RO=225;AO=13;PRO=9.5;PAO=0.0;QR=7660;QA=193;PQR=241.0;PQA=0.0;SRF=156;SRR=69;SAF=13;SAR=0;SRP=76.0586;SAP=31.2394;AB=0.0479705;ABP=483.979;RUN=1;RPP=16.5402;RPPR=109.412;RPL=11.0;RPR=2.0;EPP=16.5402;EPPR=3.09716;DPRA=0.0;ODDS=1.62468;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=3;MEANALT=4.0;LEN=5;MQM=60.0;MQMR=59.9556;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7.90617:74:61:2069:3:53:-11.9307,0.0,-191.38:3:4:73:.:.:1:.:.:.:-0.000206731	./1:17.9974:197:164:5591:10:140:-8.86387,-8.8187,-519.177:10:5:196:.:.:1:.:.:.:-0.0446778
chr8	30954274	.	G	T	91.4608	REJECT	NS=2;DP=271;DPB=281.4;AC=2;AN=3;AF=0.25;RO=225;AO=17;PRO=9.5;PAO=0.0;QR=7660;QA=298;PQR=241.0;PQA=0.0;SRF=156;SRR=69;SAF=17;SAR=0;SRP=76.0586;SAP=39.9253;AB=0.0627306;ABP=453.082;RUN=1;RPP=18.4661;RPPR=109.412;RPL=14.0;RPR=3.0;EPP=18.4661;EPPR=3.09716;DPRA=0.0;ODDS=1.62468;GTI=0;TYPE=snp;CIGAR=4M1X;NUMALT=3;MEANALT=4.0;LEN=1;MQM=58.8235;MQMR=59.9556;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.90617:74:61:2069:3:48:-11.9307,-0.450535,-191.827:3:4:73:.:.:1:.:.:.:-0.000206731	0/1:17.9974:197:164:5591:14:250:-8.86387,0.0,-509.235:14:7:196:.:.:1:.:.:.:-0.0446778
chr8	30958353	.	CT	C	8393.029999999999	REJECT	NS=2;DP=251;DPB=283.182;AC=4;AN=4;AF=1.0;RO=0;AO=290;PRO=24.5;PAO=24.5;QR=0;QA=10793;PQR=668.5;PQA=668.5;SRF=0;SRR=0;SAF=217;SAR=73;SRP=0.0;SAP=158.278;AB=0.0;ABP=0.0;RUN=1;RPP=48.5663;RPPR=0.0;RPL=106.0;RPR=184.0;EPP=4.92719;EPPR=0.0;DPRA=0.0;ODDS=54.777;GTI=0;TYPE=del;CIGAR=1M1D9M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1379;MQMR=0.0;PAIRED=0.996552;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.14;QD=32.785;RPA=7,6;RU=T;SOR=2.358;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:81:2961:-266.537,-21.9143,0.0:81:100:81:0,81:2523,244,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:210:0:0:209:7832:-704.548,-56.5734,0.0:209:100:209:0,209:7362,629,0:.:1:1:.:.:.:-0.0446778
chr8	30999122	.	C	T	2912.18	PASS	SOMATIC;NS=2;DP=427;DPB=427.0;AC=1;AN=3;AF=0.25;RO=314;AO=112;PRO=0.0;PAO=0.0;QR=11931;QA=4302;PQR=0.0;PQA=0.0;SRF=141;SRR=173;SAF=50;SAR=62;SRP=10.0918;SAP=5.80219;AB=0.336336;ABP=80.4856;RUN=1;RPP=3.0103;RPPR=4.00613;RPL=56.0;RPR=56.0;EPP=5.80219;EPPR=3.70185;DPRA=3.54255;ODDS=59.649;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.631;Dels=0.0;FS=0.423;HaplotypeScore=11.729;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.235;QD=11.4;ReadPosRankSum=2.205;SOR=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.813:92:94:3548:0:0:0.0,-25.4793,-319.415:0:0:92:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:118.9065:333:220:8383:112:4302:-297.018,0.0,-664.104:112:34:332:213,109:38.0:0.34:2:3825,0,8403:.:1:1:.:.:1:-0.0446778
chr8	31005017	.	T	TC	8557.65	REJECT	NS=2;DP=242;DPB=362.0;AC=4;AN=4;AF=1.0;RO=0;AO=267;PRO=5.0;PAO=5.0;QR=0;QA=9812;PQR=177.5;PQA=177.5;SRF=0;SRR=0;SAF=93;SAR=174;SRP=0.0;SAP=56.37;AB=0.0;ABP=0.0;RUN=1;RPP=160.145;RPPR=0.0;RPL=203.0;RPR=64.0;EPP=16.6816;EPPR=0.0;DPRA=0.0;ODDS=44.1939;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996255;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=31005017;HOMLEN=0;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.18;QD=33.75;SOR=1.526	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.3565:67:0:0:64:2321:-209.032,-17.3181,0.0:64:100:68:16,62:2732,205,0:1:.:1:1:.:.:-0.000206731	1/1:123.3565:209:0:0:203:7491:-673.881,-54.9115,0.0:203:100:211:54,204:9560,635,0:.:1:1:1:.:.:-0.0446778
chr8	31024638	.	C	T	2735.68	PASS	SOMATIC;NS=2;DP=424;DPB=424.0;AC=1;AN=3;AF=0.25;RO=318;AO=106;PRO=0.0;PAO=0.0;QR=12285;QA=4075;PQR=0.0;PQA=0.0;SRF=159;SRR=159;SAF=48;SAR=58;SRP=3.0103;SAP=5.05886;AB=0.334385;ABP=78.5323;RUN=1;RPP=8.25461;RPPR=9.15598;RPL=61.0;RPR=45.0;EPP=14.81;EPPR=3.44733;DPRA=2.96262;ODDS=67.7003;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.971698;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.139;Dels=0.0;FS=1.429;HaplotypeScore=7.7988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.904;QD=11.5;ReadPosRankSum=-1.911;SOR=0.852	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.508:105:107:4115:0:0:0.0,-28.9759,-370.336:0:0:105:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:119.254:316:211:8170:106:4075:-280.682,0.0,-648.954:106:33:316:203,102:38.0:0.333:2:3661,0,8111:.:1:1:.:.:1:-0.0446778
chr8	31502726	.	G	T	9124.07	REJECT	NS=2;DP=347;DPB=401.0;AC=2;AN=4;AF=0.5;RO=101;AO=300;PRO=0.0;PAO=0.0;QR=3914;QA=11530;PQR=0.0;PQA=0.0;SRF=63;SRR=38;SAF=186;SAR=114;SRP=16.4476;SAP=40.5333;AB=0.74813;ABP=217.455;RUN=1;RPP=61.6401;RPPR=14.3837;RPL=105.0;RPR=195.0;EPP=4.429;EPPR=4.75178;DPRA=0.0;ODDS=229.005;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1045;Dels=0.0;FS=2.488;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2965;QD=24.95;ReadPosRankSum=0.2145;SOR=0.546;ClippingRankSum=0.194	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:49:1890:56:2126:-162.897,0.0,-141.66:54:52:103:48,53:1784,0,1775:1:.:1:.:.:.:-0.000206731	0/1:129.501:295:52:2024:244:9404:-765.674,0.0,-101.867:243:82:295:52,242:9589,0,1390:.:1:1:.:.:.:-0.0446778
chr8	37501860	.	A	C	8131.2300000000005	REJECT	NS=2;DP=367;DPB=414.0;AC=3;AN=4;AF=0.75;RO=123;AO=291;PRO=0.0;PAO=0.0;QR=4745;QA=10972;PQR=0.0;PQA=0.0;SRF=59;SRR=64;SAF=126;SAR=165;SRP=3.45166;SAP=14.3602;AB=0.615625;ABP=40.1696;RUN=1;RPP=3.61473;RPPR=3.87536;RPL=150.0;RPR=141.0;EPP=88.4439;EPPR=24.6368;DPRA=0.0;ODDS=59.5499;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996564;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.075;Dels=0.0;FS=3.4755;HaplotypeScore=8.7701;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.566;QD=27.325;ReadPosRankSum=-1.338;SOR=0.887	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.768:93:0:0:94:3521:-316.925,-25.4362,0.0:93:100:93:0,93:3655,278,0:1:.:1:.:.:.:-0.000206731	0/1:122.768:320:123:4745:197:7451:-583.52,0.0,-340.167:197:62:320:123,197:7444,0,4375:.:1:1:.:.:.:-0.0446778
chr8	37686749	.	A	G	2363.79	PASS	SOMATIC;NS=2;DP=302;DPB=302.0;AC=1;AN=3;AF=0.25;RO=214;AO=88;PRO=0.0;PAO=0.0;QR=7989;QA=3399;PQR=0.0;PQA=0.0;SRF=129;SRR=85;SAF=59;SAR=29;SRP=22.655;SAP=25.2185;AB=0.394619;ABP=24.5205;RUN=1;RPP=19.6912;RPPR=64.7451;RPL=31.0;RPR=57.0;EPP=3.0103;EPPR=7.06913;DPRA=2.82278;ODDS=49.295;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9579;PAIRED=1.0;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.992;Dels=0.0;FS=2.481;HaplotypeScore=5.8597;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.028;QD=14.12;ReadPosRankSum=1.584;SOR=0.967	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.825:76:79:2916:0:0:0.0,-20.9826,-262.118:0:0:76:74,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:120.9125:222:135:5073:88:3399:-245.381,0.0,-395.97:88:39:222:132,84:38.0:0.379:2:3163,0,4933:.:1:1:.:.:1:-0.0446778
chr8	37693302	.	T	C	9375.86	REJECT	NS=2;DP=255;DPB=301.0;AC=4;AN=4;AF=1.0;RO=1;AO=300;PRO=0.0;PAO=0.0;QR=15;QA=11274;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=113;SAR=187;SRP=5.18177;SAP=42.6469;AB=0.0;ABP=0.0;RUN=1;RPP=81.2991;RPPR=5.18177;RPL=202.0;RPR=98.0;EPP=5.35549;EPPR=5.18177;DPRA=0.0;ODDS=58.8373;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9242;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.995;SOR=1.206	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:1:15:88:3352:-300.438,-22.7745,0.0:87:99:87:0,86:3560,258,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:211:0:0:212:7922:-712.256,-56.9764,0.0:211:100:211:0,210:8806,617,0:.:1:1:.:.:.:-0.0446778
chr8	37699195	.	C	G	1343.87	PASS	SOMATIC;NS=2;DP=288;DPB=288.0;AC=1;AN=3;AF=0.25;RO=229;AO=58;PRO=0.0;PAO=0.0;QR=8554;QA=2193;PQR=0.0;PQA=0.0;SRF=92;SRR=137;SAF=27;SAR=31;SRP=22.2122;SAP=3.60933;AB=0.271028;ABP=100.463;RUN=1;RPP=5.40641;RPPR=3.09564;RPL=33.0;RPR=25.0;EPP=4.35811;EPPR=14.6263;DPRA=2.89189;ODDS=47.1303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995633;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.476;Dels=0.0;FS=1.201;HaplotypeScore=6.795;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.908;QD=8.36;ReadPosRankSum=1.307;SOR=0.589	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:159.546:72:74:2736:0:0:0.0,-20.0424,-246.376:0:0:72:70,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:129.273:214:155:5818:58:2193:-139.635,0.0,-465.738:58:27:213:149,56:37.0:0.276:2:1825,0,5853:.:1:1:.:.:1:-0.0446778
chr8	37985897	.	A	G	13984.349999999999	REJECT	NS=2;DP=372;DPB=431.0;AC=4;AN=4;AF=1.0;RO=1;AO=429;PRO=0.0;PAO=0.0;QR=34;QA=16319;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=218;SAR=211;SRP=5.18177;SAP=3.25832;AB=0.0;ABP=0.0;RUN=1;RPP=3.05586;RPPR=5.18177;RPL=216.0;RPR=213.0;EPP=5.24251;EPPR=5.18177;DPRA=0.0;ODDS=76.0165;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997669;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8658;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.055;SOR=0.745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.731:114:0:0:115:4317:-388.524,-31.1385,0.0:114:100:114:0,114:4672,343,0:1:.:1:.:.:.:-0.000206731	1/1:125.731:315:1:34:314:12002:-1076.46,-82.2368,0.0:313:100:314:0,313:13383,930,0:.:1:1:.:.:.:-0.0446778
chr8	38171513	.	G	GCAAAA	4629.18	REJECT	NS=2;DP=331;DPB=476.667;AC=2;AN=4;AF=0.5;RO=186;AO=159;PRO=73.0;PAO=81.0;QR=7059;QA=5752;PQR=2510.0;PQA=2770.0;SRF=97;SRR=89;SAF=81;SAR=78;SRP=3.75747;SAP=3.13321;AB=0.458213;ABP=8.27315;RUN=1;RPP=3.6795;RPPR=4.69144;RPL=83.0;RPR=76.0;EPP=4.6628;EPPR=4.17776;DPRA=0.0;ODDS=222.73;GTI=0;TYPE=ins;CIGAR=1M5I17M;NUMALT=1;MEANALT=2.0;LEN=5;MQM=60.5031;MQMR=60.0;PAIRED=0.993711;PAIREDR=0.973118;technology.ILLUMINA=1.0;MQ0=0;END=38171513;HOMLEN=10;HOMSEQ=CAAAACAAAA;SVLEN=5;SVTYPE=INS;BaseQRankSum=0.0465;FS=5.7205;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.897;QD=17.875;RPA=2,3;RU=CAAAA;ReadPosRankSum=0.1295;SOR=0.7745;STR;ClippingRankSum=-0.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8935:77:32:1214:42:1506:-124.157,0.0,-97.0813:46:58:74:22,50:1877,0,1987:1:.:1:1:.:.:-0.000206731	0/1:117.8935:293:154:5845:117:4246:-344.904,0.0,-466.176:120:43:271:113,137:8074,0,10460:.:1:1:1:.:.:-0.0446778
chr8	38176435	.	T	G	3178.47	PASS	SOMATIC;NS=2;DP=386;DPB=386.0;AC=1;AN=3;AF=0.25;RO=269;AO=116;PRO=0.0;PAO=0.0;QR=10289;QA=4524;PQR=0.0;PQA=0.0;SRF=132;SRR=137;SAF=57;SAR=59;SRP=3.21211;SAP=3.08518;AB=0.379085;ABP=41.8697;RUN=1;RPP=3.30981;RPPR=3.01837;RPL=56.0;RPR=60.0;EPP=12.0706;EPPR=20.8422;DPRA=3.825;ODDS=50.2547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.992565;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.068;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.067;QD=13.57;ReadPosRankSum=0.432;SOR=0.702	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.417:78:79:3015:0:0:0.0,-21.3994,-271.444:0:0:77:75,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:122.2085:303:190:7274:116:4524:-324.057,0.0,-571.353:115:38:303:179,109:39.0:0.376:2:4140,0,7077:.:1:1:.:.:1:-0.0446778
chr8	38276794	.	CA	C	5507.469999999999	REJECT	NS=2;DP=373;DPB=419.429;AC=2;AN=4;AF=0.5;RO=210;AO=206;PRO=31.0;PAO=28.0;QR=7953;QA=7601;PQR=1034.0;PQA=897.0;SRF=127;SRR=83;SAF=123;SAR=83;SRP=23.0292;SAP=19.8761;AB=0.488152;ABP=3.52487;RUN=1;RPP=3.38978;RPPR=3.67208;RPL=100.0;RPR=106.0;EPP=4.52822;EPPR=10.0004;DPRA=0.0;ODDS=363.691;GTI=0;TYPE=del;CIGAR=1M1D5M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.2427;MQMR=60.0;PAIRED=0.995146;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=38276795;HOMLEN=2;HOMSEQ=AA;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.305;FS=4.6345;MLEAC=1;MLEAF=0.5;MQ=60.195;MQRankSum=-0.251;QD=14.85;RPA=3,2;RU=A;ReadPosRankSum=-0.303;SOR=0.548;STR;ClippingRankSum=-1.875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:58:2189:57:2104:-158.279,0.0,-178.381:57:48:119:89,75:1676,0,1849:1:.:1:1:.:.:-0.000206731	0/1:129.501:314:152:5764:149:5497:-424.087,0.0,-448.088:154:50:310:233,214:5308,0,5389:.:1:1:1:.:.:-0.0446778
chr8	38286811	.	C	G	5098.795	REJECT	NS=2;DP=351;DPB=405.0;AC=2;AN=4;AF=0.5;RO=215;AO=189;PRO=0.0;PAO=0.0;QR=8261;QA=7174;PQR=0.0;PQA=0.0;SRF=117;SRR=98;SAF=96;SAR=93;SRP=6.65635;SAP=3.1137;AB=0.466667;ABP=6.91895;RUN=1;RPP=24.254;RPPR=11.5043;RPL=73.0;RPR=116.0;EPP=11.386;EPPR=5.28277;DPRA=0.0;ODDS=316.699;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973545;PAIREDR=0.990698;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.789;Dels=0.0;FS=1.9115;HaplotypeScore=7.8234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.489;QD=15.615;ReadPosRankSum=0.8005;SOR=0.6365;ClippingRankSum=-0.987	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:54:2056:49:1857:-139.242,0.0,-157.165:49:48:103:54,49:1541,0,1915:1:.:1:.:.:.:-0.000206731	0/1:129.501:300:161:6205:140:5317:-396.73,0.0,-476.609:138:46:299:160,137:4956,0,6012:.:1:1:.:.:.:-0.0446778
chr8	38424739	.	C	T	8099.96	REJECT	NS=2;DP=355;DPB=408.0;AC=3;AN=4;AF=0.75;RO=114;AO=294;PRO=0.0;PAO=0.0;QR=4210;QA=11094;PQR=0.0;PQA=0.0;SRF=65;SRR=49;SAF=189;SAR=105;SRP=7.88659;SAP=55.1256;AB=0.62623;ABP=45.2223;RUN=1;RPP=6.5851;RPPR=4.9151;RPL=136.0;RPR=158.0;EPP=4.90111;EPPR=3.31507;DPRA=0.0;ODDS=65.2212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993197;PAIREDR=0.982456;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.087;Dels=0.0;FS=1.361;HaplotypeScore=3.8686;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.047;QD=28.14;ReadPosRankSum=0.045;SOR=1.3265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:103:3822:-344.032,-27.8992,0.0:103:100:103:0,103:4147,309,0:1:.:1:.:.:.:-0.000206731	0/1:129.501:304:114:4210:191:7272:-571.567,0.0,-296.111:190:63:304:113,190:7189,0,3691:.:1:1:.:.:.:-0.0446778
chr8	38424961	.	T	C	9024.635	REJECT	NS=2;DP=393;DPB=448.0;AC=3;AN=4;AF=0.75;RO=128;AO=320;PRO=0.0;PAO=0.0;QR=4896;QA=12269;PQR=0.0;PQA=0.0;SRF=48;SRR=80;SAF=132;SAR=188;SRP=20.3821;SAP=24.2907;AB=0.622419;ABP=47.138;RUN=1;RPP=6.91895;RPPR=9.79615;RPL=172.0;RPR=148.0;EPP=8.33041;EPPR=5.45321;DPRA=0.0;ODDS=68.9633;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.98;Dels=0.0;FS=2.219;HaplotypeScore=6.8656;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.361;QD=25.435;ReadPosRankSum=1.858;SOR=0.9365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.7495:108:0:0:109:4163:-374.669,-29.5244,0.0:108:100:108:0,108:4404,324,0:1:.:1:.:.:.:-0.000206731	0/1:118.7495:338:128:4896:211:8106:-637.26,0.0,-348.571:211:62:338:127,211:8048,0,4403:.:1:1:.:.:.:-0.0446778
chr8	38426012	.	A	G	13391.599999999999	REJECT	NS=2;DP=351;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=400;PRO=0.0;PAO=0.0;QR=0;QA=15451;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=172;SAR=228;SRP=0.0;SAP=20.0346;AB=0.0;ABP=0.0;RUN=1;RPP=6.68009;RPPR=0.0;RPL=213.0;RPR=187.0;EPP=6.68009;EPPR=0.0;DPRA=0.0;ODDS=66.0857;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9875;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.32;SOR=1.0355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:99:3807:-342.667,-26.8256,0.0:97:100:97:0,96:3918,288,0:1:.:1:.:.:.:-0.000206731	1/1:129.501:301:0:0:301:11644:-1047.31,-81.5307,0.0:300:100:300:0,300:12978,894,0:.:1:1:.:.:.:-0.0446778
chr8	41806890	.	G	A	1468.89	PASS	SOMATIC;NS=2;DP=238;DPB=238.0;AC=1;AN=3;AF=0.25;RO=176;AO=61;PRO=0.0;PAO=0.0;QR=6724;QA=2308;PQR=0.0;PQA=0.0;SRF=46;SRR=130;SAF=14;SAR=47;SRP=90.0666;SAP=41.7764;AB=0.331522;ABP=48.3752;RUN=1;RPP=25.259;RPPR=31.4368;RPL=43.0;RPR=18.0;EPP=3.90025;EPPR=4.78696;DPRA=3.40741;ODDS=34.7008;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994318;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.318;Dels=0.0;FS=0.0;HaplotypeScore=4.91;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.558;QD=10.85;ReadPosRankSum=-1.828;SOR=0.627	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.351:53:54:2071:0:0:0.0,-14.6444,-186.587:0:0:53:53,0:.:0.0:0:.:.:.:0:.:.:0:-0.000206731	0/1:129.501:184:122:4653:61:2308:-158.099,0.0,-369.057:61:33:183:119,58:37.0:0.326:2:2025,0,4621:.:1:1:.:.:1:-0.0446778
chr8	48732074	.	T	A	51.5935	REJECT	NS=2;DP=66;DPB=110.379;AC=2;AN=2;AF=0.0;RO=34;AO=3;PRO=34.75;PAO=1.0;QR=1283;QA=42;PQR=1226.0;PQA=16.0;SRF=0;SRR=34;SAF=0;SAR=3;SRP=76.8404;SAP=9.52472;AB=0.0454545;ABP=121.454;RUN=1;RPP=3.73412;RPPR=7.09778;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=7.09778;DPRA=0.0;ODDS=1.62704;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=4;MEANALT=5.5;LEN=1;MQM=59.6667;MQMR=59.7647;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.55873:22:13:482:1:14:-3.40885,-31.6904,-343.949:1:5:21:.:.:1:.:.:.:-0.000253751	./1:50.9179:44:21:801:2:28:-7.62033,-74.9429,-823.034:2:5:40:.:.:1:.:.:.:-0.0164845
chr8	48732074	.	T	TA	51.5935	REJECT	NS=2;DP=66;DPB=110.379;AC=2;AN=4;AF=0.5;RO=34;AO=7;PRO=34.75;PAO=26.25;QR=1283;QA=141;PQR=1226.0;PQA=892.5;SRF=0;SRR=34;SAF=0;SAR=7;SRP=76.8404;SAP=18.2106;AB=0.106061;ABP=91.9749;RUN=1;RPP=5.80219;RPPR=7.09778;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=7.09778;DPRA=0.0;ODDS=1.62704;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=4;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=59.7647;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.55873:22:13:482:4:64:-3.40885,0.0,-48.3289:4:19:21:.:.:1:.:.:.:-0.000253751	0/1:50.9179:44:21:801:3:77:-7.62033,0.0,-91.0805:3:8:40:.:.:1:.:.:.:-0.0164845
chr8	48732074	.	T	TAA	51.5935	REJECT	NS=2;DP=66;DPB=110.379;AC=2;AN=2;AF=0.0;RO=34;AO=4;PRO=34.75;PAO=24.25;QR=1283;QA=87;PQR=1226.0;PQA=836.5;SRF=0;SRR=34;SAF=0;SAR=4;SRP=76.8404;SAP=11.6962;AB=0.0606061;ABP=113.69;RUN=1;RPP=11.6962;RPPR=7.09778;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=7.09778;DPRA=0.0;ODDS=1.62704;GTI=0;TYPE=ins;CIGAR=1M2I28M;NUMALT=4;MEANALT=5.5;LEN=2;MQM=55.0;MQMR=59.7647;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.55873:22:13:482:1:34:-3.40885,-2.52356,-51.2567:1:5:21:.:.:1:.:.:.:-0.000253751	./1:50.9179:44:21:801:3:53:-7.62033,-6.03918,-97.6629:3:8:40:.:.:1:.:.:.:-0.0164845
chr8	48732074	.	TA	T	51.5935	REJECT	NS=2;DP=66;DPB=110.379;AC=2;AN=2;AF=0.0;RO=34;AO=13;PRO=34.75;PAO=18.75;QR=1283;QA=334;PQR=1226.0;PQA=631.0;SRF=0;SRR=34;SAF=0;SAR=13;SRP=76.8404;SAP=31.2394;AB=0.19697;ABP=55.6521;RUN=1;RPP=16.5402;RPPR=7.09778;RPL=11.0;RPR=2.0;EPP=16.5402;EPPR=7.09778;DPRA=0.0;ODDS=1.62704;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=4;MEANALT=5.5;LEN=1;MQM=56.0769;MQMR=59.7647;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.55873:22:13:482:2:53:-3.40885,-7.04074,-90.1188:2:10:21:.:.:1:.:.:.:-0.000253751	./1:50.9179:44:21:801:11:281:-7.62033,-1.21019,-205.711:11:28:40:.:.:1:.:.:.:-0.0164845
chr8	48805816	.	A	AG	12344.25	REJECT	NS=2;DP=335;DPB=517.333;AC=4;AN=4;AF=1.0;RO=0;AO=371;PRO=12.5;PAO=19.5;QR=0;QA=13604;PQR=347.5;PQA=587.5;SRF=0;SRR=0;SAF=231;SAR=140;SRP=0.0;SAP=51.4792;AB=0.0;ABP=0.0;RUN=1;RPP=6.10655;RPPR=0.0;RPL=174.0;RPR=197.0;EPP=8.63506;EPPR=0.0;DPRA=0.0;ODDS=60.9323;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.2156;MQMR=0.0;PAIRED=0.994609;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=48805816;HOMLEN=1;HOMSEQ=G;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.35;QD=31.435;RPA=1,2;RU=G;SOR=1.207;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.3315:90:0:0:89:3189:-292.8,-24.5875,0.0:91:100:91:28,105:3445,280,0:1:.:1:1:.:.:-0.000253751	1/1:126.3315:290:0:0:282:10415:-952.588,-77.593,0.0:292:100:292:99,378:12371,879,0:.:1:1:1:.:.:-0.0164845
chr8	48846519	.	T	C	12557.15	REJECT	NS=2;DP=332;DPB=375.0;AC=4;AN=4;AF=1.0;RO=0;AO=375;PRO=0.0;PAO=0.0;QR=0;QA=14428;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=264;SAR=111;SRP=0.0;SAP=138.562;AB=0.0;ABP=0.0;RUN=1;RPP=32.2007;RPPR=0.0;RPL=152.0;RPR=223.0;EPP=42.9017;EPPR=0.0;DPRA=0.0;ODDS=56.1211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.984;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.42;SOR=1.9655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.6315:81:0:0:83:3173:-285.675,-22.498,0.0:81:100:81:0,80:3420,241,0:1:.:1:.:.:.:-0.000253751	1/1:128.6315:291:0:0:292:11255:-1012.29,-79.0554,0.0:291:100:291:0,290:12413,852,0:.:1:1:.:.:.:-0.0164845
chr8	48852225	.	C	T	2064.175	REJECT	NS=2;DP=320;DPB=377.0;AC=2;AN=4;AF=0.5;RO=282;AO=95;PRO=0.0;PAO=0.0;QR=10729;QA=3639;PQR=0.0;PQA=0.0;SRF=92;SRR=190;SAF=41;SAR=54;SRP=76.9636;SAP=6.87324;AB=0.251989;ABP=204.427;RUN=1;RPP=3.21602;RPPR=30.7312;RPL=49.0;RPR=46.0;EPP=8.15326;EPPR=10.8954;DPRA=0.0;ODDS=102.002;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9579;MQMR=60.0;PAIRED=0.978947;PAIREDR=0.996454;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.78;Dels=0.0;FS=5.592;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5345;QD=10.14;ReadPosRankSum=0.4585;SOR=0.435;ClippingRankSum=0.604	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:52:1996:61:2346:-180.521,0.0,-149.021:58:53:109:50,56:1968,0,1655:1:.:1:.:.:.:-0.000253751	0/1:129.501:264:230:8733:34:1293:-44.8162,0.0,-714.068:34:13:264:230,34:640,0,8953:.:1:1:.:.:.:-0.0164845
chr8	51010911	.	A	G	9615.3	REJECT	NS=2;DP=349;DPB=397.0;AC=2;AN=4;AF=0.5;RO=79;AO=318;PRO=0.0;PAO=0.0;QR=3023;QA=12065;PQR=0.0;PQA=0.0;SRF=30;SRR=49;SAF=135;SAR=183;SRP=12.9331;SAP=18.7432;AB=0.801008;ABP=315.445;RUN=1;RPP=65.942;RPPR=15.1321;RPL=207.0;RPR=111.0;EPP=22.9223;EPPR=6.33623;DPRA=0.0;ODDS=62.6804;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993711;PAIREDR=0.987342;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.256;Dels=0.0;FS=1.97;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.243;QD=25.95;ReadPosRankSum=1.2025;SOR=0.5795;ClippingRankSum=0.511	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:47:1793:46:1722:-129.82,0.0,-136.207:46:49:92:46,46:1622,0,1681:1:.:1:.:.:.:-0.000253751	0/1:129.501:303:32:1230:272:10343:-848.001,0.0,-28.3298:271:89:303:32,270:10527,0,477:.:1:1:.:.:.:-0.0164845
chr8	57078933	.	G	T	4925.12	REJECT	NS=2;DP=318;DPB=361.0;AC=2;AN=4;AF=0.5;RO=189;AO=172;PRO=0.0;PAO=0.0;QR=7246;QA=6628;PQR=0.0;PQA=0.0;SRF=90;SRR=99;SAF=84;SAR=88;SRP=3.94093;SAP=3.2123;AB=0.476454;ABP=4.74868;RUN=1;RPP=3.0608;RPPR=3.94093;RPL=85.0;RPR=87.0;EPP=3.0608;EPPR=7.15793;DPRA=0.0;ODDS=237.705;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988372;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6855;Dels=0.0;FS=2.0815;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.203;QD=16.295;ReadPosRankSum=-0.461;SOR=0.8765;ClippingRankSum=0.185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:48:1853:37:1407:-103.625,0.0,-143.789:36:43:84:48,36:1262,0,1750:1:.:1:.:.:.:-0.000253751	0/1:129.501:275:141:5393:135:5221:-394.868,0.0,-410.332:134:49:275:141,134:4999,0,5204:.:1:1:.:.:.:-0.0164845
chr8	61504093	.	A	G	5332.91	REJECT	NS=2;DP=216;DPB=247.0;AC=2;AN=4;AF=0.5;RO=65;AO=182;PRO=0.0;PAO=0.0;QR=2486;QA=6907;PQR=0.0;PQA=0.0;SRF=43;SRR=22;SAF=112;SAR=70;SRP=17.7429;SAP=24.0569;AB=0.736842;ABP=123.356;RUN=1;RPP=127.142;RPPR=53.8228;RPL=40.0;RPR=142.0;EPP=4.20342;EPPR=4.64726;DPRA=0.0;ODDS=131.271;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994505;PAIREDR=0.984615;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2205;Dels=0.0;FS=4.684;HaplotypeScore=5.9274;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3055;QD=22.95;ReadPosRankSum=0.6375;SOR=0.552;ClippingRankSum=-0.951	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:60:33:1254:27:998:-73.6343,0.0,-96.7045:27:45:60:33,27:844,0,1179:1:.:1:.:.:.:-0.000253751	0/1:129.501:186:32:1232:155:5909:-480.955,0.0,-60.1967:154:83:186:32,154:6036,0,831:.:1:1:.:.:.:-0.0164845
chr8	61504193	.	G	A	8043.17	REJECT	NS=2;DP=315;DPB=357.0;AC=2;AN=4;AF=0.5;RO=92;AO=264;PRO=0.0;PAO=0.0;QR=3467;QA=10108;PQR=0.0;PQA=0.0;SRF=37;SRR=55;SAF=131;SAR=133;SRP=10.6577;SAP=3.0432;AB=0.739496;ABP=180.87;RUN=1;RPP=9.45891;RPPR=3.0103;RPL=146.0;RPR=118.0;EPP=20.415;EPPR=3.86001;DPRA=0.0;ODDS=179.163;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5765;Dels=0.0;FS=6.56;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2755;QD=23.535;ReadPosRankSum=0.509;SOR=0.5375;ClippingRankSum=-0.955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:47:1760:34:1331:-97.8883,0.0,-136.507:34:42:80:45,34:1177,0,1588:1:.:1:.:.:.:-0.000253751	0/1:129.501:274:45:1707:230:8777:-715.047,0.0,-79.0657:229:84:274:44,229:8959,0,1048:.:1:1:.:.:.:-0.0164845
chr8	67491249	.	A	G	1121.6399999999999	REJECT	NS=2;DP=34;DPB=41.0;AC=4;AN=4;AF=1.0;RO=0;AO=41;PRO=0.0;PAO=0.0;QR=0;QA=1539;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=41;SAR=0;SRP=0.0;SAP=92.0407;AB=0.0;ABP=0.0;RUN=1;RPP=14.9269;RPPR=0.0;RPL=13.0;RPR=28.0;EPP=14.9269;EPPR=0.0;DPRA=0.0;ODDS=13.08;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=42.7805;MQMR=0.0;PAIRED=0.97561;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=44.035;QD=29.53;SOR=5.9745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:47.9029:13:0:0:14:524:-44.0401,-3.80552,0.0:13:100:13:0,13:551,39,0:1:.:1:.:.:.:-0.00044971	1/1:85.0385:27:0:0:27:1015:-87.3454,-7.33264,0.0:27:100:27:0,27:1123,78,0:.:1:1:.:.:.:-0.00653895
chr8	67491498	.	A	T	6127.405000000001	REJECT	NS=2;DP=386;DPB=448.0;AC=2;AN=4;AF=0.5;RO=225;AO=223;PRO=0.0;PAO=0.0;QR=8624;QA=8410;PQR=0.0;PQA=0.0;SRF=151;SRR=74;SAF=147;SAR=76;SRP=60.231;SAP=52.0973;AB=0.497768;ABP=3.02969;RUN=1;RPP=80.1414;RPPR=30.1199;RPL=67.0;RPR=156.0;EPP=14.9388;EPPR=46.3336;DPRA=0.0;ODDS=335.297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8834;MQMR=59.9378;PAIRED=0.995516;PAIREDR=0.995556;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.565;Dels=0.0;FS=0.2095;HaplotypeScore=7.7987;MLEAC=1;MLEAF=0.5;MQ=59.935;MQRankSum=-0.7425;QD=16.6;ReadPosRankSum=1.3445;SOR=0.699;ClippingRankSum=1.374	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:117:66:2509:56:2039:-150.425,0.0,-192.719:54:46:117:60,52:1643,0,1938:1:.:1:.:.:.:-0.00044971	0/1:129.501:325:159:6115:167:6371:-484.757,0.0,-461.719:166:51:325:159,166:6133,0,5848:.:1:1:.:.:.:-0.00653895
chr8	67491891	.	T	TA	251.887	REJECT	NS=2;DP=255;DPB=330.1;AC=2;AN=2;AF=0.0;RO=168;AO=23;PRO=58.6667;PAO=46.6667;QR=6111;QA=829;PQR=1985.17;PQA=1549.17;SRF=159;SRR=9;SAF=22;SAR=1;SRP=293.832;SAP=44.6459;AB=0.0901961;ABP=374.979;RUN=1;RPP=37.093;RPPR=55.9529;RPL=2.0;RPR=21.0;EPP=30.2953;EPPR=59.3135;DPRA=0.0;ODDS=22.3836;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.913043;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.411:65:40:1467:6:198:-12.547,-8.8197,-146.268:6:11:54:.:.:1:.:.:.:-0.00044971	./1:97.2099:190:128:4644:17:631:-24.6667,-8.80576,-405.56:17:10:165:.:.:1:.:.:.:-0.00653895
chr8	67491891	.	TA	T	251.887	REJECT	NS=2;DP=255;DPB=330.1;AC=2;AN=4;AF=0.5;RO=168;AO=28;PRO=58.6667;PAO=45.6667;QR=6111;QA=1052;PQR=1985.17;PQA=1512.67;SRF=159;SRR=9;SAF=26;SAR=2;SRP=293.832;SAP=47.6806;AB=0.109804;ABP=340.236;RUN=1;RPP=14.1779;RPPR=55.9529;RPL=8.0;RPR=20.0;EPP=14.1779;EPPR=59.3135;DPRA=0.0;ODDS=22.3836;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.561;FS=9.753;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.424;QD=0.82;ReadPosRankSum=2.279;SOR=0.055;ClippingRankSum=0.011	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:109.7055:62:40:1467:8:302:-12.547,0.0,-136.895:9:16:57:49,11:99,0,968:1:.:1:.:.:.:-0.00044971	0/1:97.2099:190:128:4644:20:750:-24.6667,0.0,-407.996:20:12:165:.:.:.:.:1:.:.:.:-0.00653895
chr8	67509142	.	A	T	2398.07	PASS	SOMATIC;NS=2;DP=428;DPB=428.0;AC=1;AN=3;AF=0.25;RO=331;AO=97;PRO=0.0;PAO=0.0;QR=12733;QA=3654;PQR=0.0;PQA=0.0;SRF=199;SRR=132;SAF=62;SAR=35;SRP=32.4597;SAP=19.3299;AB=0.325503;ABP=81.8245;RUN=1;RPP=12.8827;RPPR=24.3248;RPL=38.0;RPR=59.0;EPP=6.79359;EPPR=67.3082;DPRA=2.29231;ODDS=82.1254;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993958;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.482;Dels=0.0;FS=2.78;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.443;QD=10.59;ReadPosRankSum=-0.616;SOR=0.878	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:124:130:5015:0:0:0.0,-35.2406,-451.316:0:0:124:119,0:.:0.0:0:.:.:.:0:.:.:0:-0.00044971	0/1:129.501:298:201:7718:97:3654:-247.956,0.0,-613.529:97:33:298:190,93:38.0:0.331:2:3183,0,7771:.:1:1:.:.:1:-0.00653895
chr8	68864728	.	G	A	3505.65	REJECT	NS=1;DP=105;DPB=105.0;AC=2;AN=4;AF=1.0;RO=0;AO=105;PRO=0.0;PAO=0.0;QR=0;QA=3974;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=70;SAR=35;SRP=0.0;SAP=28.3441;AB=0.0;ABP=0.0;RUN=1;RPP=13.9504;RPPR=0.0;RPL=41.0;RPR=64.0;EPP=4.68544;EPPR=0.0;DPRA=0.0;ODDS=70.1305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990476;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.37;SOR=1.542	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.6905:104:0:0:105:3974:-357.709,-28.4573,0.0:104:100:104:0,103:4220,309,0:1:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00653895
chr8	68968166	.	C	A	6088.575000000001	REJECT	NS=2;DP=384;DPB=444.0;AC=2;AN=4;AF=0.5;RO=226;AO=218;PRO=0.0;PAO=0.0;QR=8597;QA=8472;PQR=0.0;PQA=0.0;SRF=116;SRR=110;SAF=117;SAR=101;SRP=3.3562;SAP=5.56029;AB=0.490991;ABP=3.3233;RUN=1;RPP=3.05014;RPPR=6.12338;RPL=110.0;RPR=108.0;EPP=3.6478;EPPR=9.5055;DPRA=0.0;ODDS=367.015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.026;Dels=0.0;FS=1.833;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.5875;QD=18.835;ReadPosRankSum=0.631;SOR=0.8485;ClippingRankSum=-3.489	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:57:2145:62:2385:-182.407,0.0,-160.802:60:51:116:56,58:2333,0,4166:1:.:1:.:.:.:-0.00044971	0/1:129.501:324:169:6452:156:6087:-459.457,0.0,-492.281:156:48:324:168,156:5851,0,6171:.:1:1:.:.:.:-0.00653895
chr8	68968171	.	G	A	6123.405000000001	REJECT	NS=2;DP=388;DPB=449.0;AC=2;AN=4;AF=0.5;RO=227;AO=222;PRO=0.0;PAO=0.0;QR=8647;QA=8480;PQR=0.0;PQA=0.0;SRF=121;SRR=106;SAF=118;SAR=104;SRP=5.16264;SAP=4.92746;AB=0.494432;ABP=3.13121;RUN=1;RPP=4.41882;RPPR=11.0553;RPL=105.0;RPR=117.0;EPP=5.51434;EPPR=8.07069;DPRA=0.0;ODDS=375.916;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990991;PAIREDR=0.991189;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.065;Dels=0.0;FS=0.546;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8835;QD=18.555;ReadPosRankSum=0.3;SOR=0.762;ClippingRankSum=-0.316	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.706:117:58:2190:62:2301:-174.944,0.0,-164.617:60:51:117:57,58:2286,0,4203:1:.:1:.:.:.:-0.00044971	0/1:117.706:328:169:6457:160:6179:-466.657,0.0,-491.665:160:49:328:168,160:5926,0,6206:.:1:1:.:.:.:-0.00653895
chr8	68972907	.	C	G	2221.23	PASS	SOMATIC;NS=2;DP=327;DPB=327.0;AC=1;AN=3;AF=0.25;RO=243;AO=83;PRO=0.0;PAO=0.0;QR=9460;QA=3265;PQR=0.0;PQA=0.0;SRF=160;SRR=83;SAF=53;SAR=30;SRP=55.9924;SAP=16.8502;AB=0.350211;ABP=49.1976;RUN=1;RPP=14.5479;RPPR=26.2531;RPL=31.0;RPR=52.0;EPP=3.24576;EPPR=22.7501;DPRA=2.63333;ODDS=57.1592;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987952;PAIREDR=0.983539;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=4.115;Dels=0.0;FS=4.164;HaplotypeScore=7.8972;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.113;QD=12.42;ReadPosRankSum=0.168;SOR=0.461	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:90:3484:0:0:0.0,-24.398,-313.634:0:0:88:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.00044971	0/1:129.501:236:153:5976:83:3265:-229.736,0.0,-473.613:83:35:235:145,81:39.0:0.362:2:2959,0,5954:.:1:1:.:.:1:-0.00653895
chr8	68993013	.	AT	GC	1584.865	REJECT	NS=2;DP=358;DPB=410.0;AC=2;AN=4;AF=0.5;RO=329;AO=74;PRO=7.0;PAO=3.0;QR=12326;QA=2752;PQR=127.0;PQA=113.0;SRF=170;SRR=159;SAF=33;SAR=41;SRP=3.80893;SAP=4.88833;AB=0.182716;ABP=357.143;RUN=1;RPP=10.5224;RPPR=3.0697;RPL=29.0;RPR=45.0;EPP=3.12768;EPPR=29.2066;DPRA=0.0;ODDS=154.219;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=2.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990881;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=1.5495;Dels=0.0;FS=2.857;HaplotypeScore=3.9239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.393;QD=8.935;ReadPosRankSum=0.964;SOR=0.767;ClippingRankSum=-0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.1265:98:59:2231:37:1328:-99.6464,0.0,-174.313:39:40:98:58,42:1586,0,4316:1:.:1:.:.:.:-0.00044971	0/1:120.1265:310:270:10095:37:1424:-67.8976,0.0,-834.19:37:12:309:275,37:743,0,10303:.:1:1:.:.:.:-0.00653895
chr8	68995468	.	C	T	1042.9	REJECT	NS=2;DP=310;DPB=352.0;AC=2;AN=4;AF=0.5;RO=285;AO=67;PRO=0.0;PAO=0.0;QR=10811;QA=2419;PQR=0.0;PQA=0.0;SRF=209;SRR=76;SAF=45;SAR=22;SRP=137.786;SAP=20.1552;AB=0.190341;ABP=296.184;RUN=1;RPP=12.3768;RPPR=71.7736;RPL=25.0;RPR=42.0;EPP=6.93191;EPPR=3.38364;DPRA=0.0;ODDS=101.993;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.4925;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.351;Dels=0.0;FS=3.5365;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-0.2675;QD=7.26;ReadPosRankSum=1.821;SOR=0.3975;ClippingRankSum=-0.909	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.666:79:51:1915:30:1094:-76.5624,0.0,-150.478:29:37:79:48,29:974,0,1808:1:.:1:.:.:.:-0.00044971	0/1:118.666:270:234:8896:37:1325:-45.8237,0.0,-726.833:37:14:270:232,37:670,0,9040:.:1:1:.:.:.:-0.00653895
chr8	68995633	.	A	G	1111.56	REJECT	NS=2;DP=278;DPB=313.0;AC=2;AN=4;AF=0.5;RO=250;AO=63;PRO=0.0;PAO=0.0;QR=9648;QA=2387;PQR=0.0;PQA=0.0;SRF=59;SRR=191;SAF=21;SAR=42;SRP=154.353;SAP=18.2106;AB=0.201278;ABP=245.612;RUN=1;RPP=12.9715;RPPR=64.2979;RPL=40.0;RPR=23.0;EPP=3.872;EPPR=8.88196;DPRA=0.0;ODDS=92.1273;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.547;Dels=0.0;FS=4.8795;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.556;QD=8.62;ReadPosRankSum=0.2865;SOR=0.269;ClippingRankSum=1.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.895:68:39:1510:31:1195:-88.6346,0.0,-116.995:31:45:68:35,31:1030,0,1330:1:.:1:.:.:.:-0.00044971	0/1:118.895:243:211:8138:32:1192:-41.4014,0.0,-666.244:32:13:243:211,32:585,0,8385:.:1:1:.:.:.:-0.00653895
chr8	68999938	.	C	T	1138.92	REJECT	NS=2;DP=256;DPB=294.0;AC=2;AN=4;AF=0.5;RO=233;AO=61;PRO=0.0;PAO=0.0;QR=8862;QA=2365;PQR=0.0;PQA=0.0;SRF=169;SRR=64;SAF=42;SAR=19;SRP=105.759;SAP=21.8416;AB=0.207483;ABP=221.517;RUN=1;RPP=13.2981;RPPR=64.1564;RPL=22.0;RPR=39.0;EPP=13.2981;EPPR=5.10722;DPRA=0.0;ODDS=94.8984;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.651;Dels=0.0;FS=0.8865;HaplotypeScore=4.8483;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.5555;QD=8.375;ReadPosRankSum=0.803;SOR=0.5645;ClippingRankSum=-0.34	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:44:1628:31:1223:-89.8061,0.0,-126.263:31:41:74:42,31:1066,0,1525:1:.:1:.:.:.:-0.00044971	0/1:129.501:218:189:7234:30:1142:-43.4278,0.0,-591.445:30:14:218:188,30:624,0,7367:.:1:1:.:.:.:-0.00653895
chr8	69002965	.	A	G	1243.8	REJECT	NS=2;DP=239;DPB=272.0;AC=2;AN=4;AF=0.5;RO=203;AO=67;PRO=0.0;PAO=0.0;QR=7784;QA=2558;PQR=0.0;PQA=0.0;SRF=65;SRR=138;SAF=21;SAR=46;SRP=60.0141;SAP=23.2666;AB=0.246324;ABP=155.045;RUN=1;RPP=3.82055;RPPR=28.6936;RPL=36.0;RPR=31.0;EPP=23.2666;EPPR=14.6592;DPRA=0.0;ODDS=171.169;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.2985;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995074;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.095;Dels=0.0;FS=0.8765;HaplotypeScore=5.8534;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=-0.563;QD=9.43;ReadPosRankSum=0.88;SOR=0.772;ClippingRankSum=0.229	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:64:37:1454:28:1075:-79.1934,0.0,-113.318:27:43:64:36,27:935,0,1277:1:.:1:.:.:.:-0.00044971	0/1:129.501:206:166:6330:39:1483:-77.8955,0.0,-513.941:39:19:205:166,39:1040,0,6473:.:1:1:.:.:.:-0.00653895
chr8	69009268	.	C	T	1407.365	REJECT	NS=2;DP=326;DPB=371.0;AC=2;AN=4;AF=0.5;RO=296;AO=75;PRO=0.0;PAO=0.0;QR=11316;QA=2860;PQR=0.0;PQA=0.0;SRF=194;SRR=102;SAF=52;SAR=23;SRP=65.1027;SAP=27.3597;AB=0.202156;ABP=288.878;RUN=1;RPP=9.52472;RPPR=8.76177;RPL=30.0;RPR=45.0;EPP=6.51361;EPPR=4.06669;DPRA=0.0;ODDS=93.3375;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1225;Dels=0.0;FS=2.1865;HaplotypeScore=6.8656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.258;QD=9.02;ReadPosRankSum=0.7475;SOR=1.0035;ClippingRankSum=-0.332	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.451:86:49:1840:40:1536:-114.159,0.0,-141.531:39:45:86:45,39:1363,0,1624:1:.:1:.:.:.:-0.00044971	0/1:118.451:281:247:9476:35:1324:-42.7079,0.0,-775.992:35:12:281:246,35:633,0,9732:.:1:1:.:.:.:-0.00653895
chr8	69020496	.	T	C	6038.8	REJECT	NS=2;DP=370;DPB=422.0;AC=2;AN=4;AF=0.5;RO=205;AO=217;PRO=0.0;PAO=0.0;QR=7928;QA=8291;PQR=0.0;PQA=0.0;SRF=83;SRR=122;SAF=100;SAR=117;SRP=19.1216;SAP=5.90226;AB=0.514218;ABP=3.75128;RUN=1;RPP=13.9077;RPPR=4.80044;RPL=92.0;RPR=125.0;EPP=3.82085;EPPR=5.39362;DPRA=0.0;ODDS=298.514;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990244;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.253;Dels=0.0;FS=5.468;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.162;QD=18.745;ReadPosRankSum=0.326;SOR=0.5265;ClippingRankSum=-0.66	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:46:1765:57:2185:-168.75,0.0,-130.961:57:55:102:45,57:1979,0,1594:1:.:1:.:.:.:-0.00044971	0/1:129.501:318:159:6163:160:6106:-462.792,0.0,-467.94:160:50:318:158,160:5866,0,5911:.:1:1:.:.:.:-0.00653895
chr8	69136871	.	T	A	4540.76	REJECT	NS=2;DP=298;DPB=341.0;AC=2;AN=4;AF=0.5;RO=174;AO=167;PRO=0.0;PAO=0.0;QR=6628;QA=6372;PQR=0.0;PQA=0.0;SRF=72;SRR=102;SAF=49;SAR=118;SRP=14.2421;SAP=64.9168;AB=0.489736;ABP=3.32233;RUN=1;RPP=20.8112;RPPR=12.7944;RPL=102.0;RPR=65.0;EPP=11.1371;EPPR=12.7944;DPRA=0.0;ODDS=251.231;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994253;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.915;Dels=0.0;FS=8.722;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4455;QD=17.385;ReadPosRankSum=-0.5555;SOR=1.4595;ClippingRankSum=0.562	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4145:83:39:1484:46:1732:-132.904,0.0,-110.563:44:53:83:39,42:1440,0,1342:1:.:1:.:.:.:-0.00044971	0/1:118.4145:255:135:5144:121:4640:-348.037,0.0,-393.762:121:47:255:134,121:4449,0,4963:.:1:1:.:.:.:-0.00653895
chr8	69143520	.	A	C	3097.0299999999997	REJECT	NS=2;DP=248;DPB=292.0;AC=2;AN=4;AF=0.5;RO=169;AO=123;PRO=0.0;PAO=0.0;QR=6527;QA=4640;PQR=0.0;PQA=0.0;SRF=113;SRR=56;SAF=86;SAR=37;SRP=44.7565;SAP=45.3981;AB=0.421233;ABP=18.746;RUN=1;RPP=60.3689;RPPR=33.8606;RPL=33.0;RPR=90.0;EPP=3.16919;EPPR=9.80739;DPRA=0.0;ODDS=219.241;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98374;PAIREDR=0.988166;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4085;Dels=0.0;FS=0.9485;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9765;QD=14.635;ReadPosRankSum=1.0665;SOR=0.8305;ClippingRankSum=-0.778	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.051:83:49:1879:35:1335:-97.4192,0.0,-146.394:35:42:83:47,35:1255,0,1709:1:.:1:.:.:.:-0.00044971	0/1:119.051:206:120:4648:88:3305:-240.988,0.0,-361.806:87:42:206:119,86:2998,0,4532:.:1:1:.:.:.:-0.00653895
chr8	69143589	.	A	G	5395.02	REJECT	NS=2;DP=342;DPB=396.0;AC=2;AN=4;AF=0.5;RO=201;AO=195;PRO=0.0;PAO=0.0;QR=7677;QA=7466;PQR=0.0;PQA=0.0;SRF=95;SRR=106;SAF=121;SAR=74;SRP=4.3175;SAP=27.6092;AB=0.492424;ABP=3.20771;RUN=1;RPP=3.9123;RPPR=3.28038;RPL=102.0;RPR=93.0;EPP=29.7472;EPPR=4.83607;DPRA=0.0;ODDS=334.104;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989744;PAIREDR=0.985075;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6705;Dels=0.0;FS=13.959;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.338;QD=17.385;ReadPosRankSum=0.731;SOR=1.2165;ClippingRankSum=-1.235	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.859:104:53:2046:51:1952:-147.503,0.0,-155.978:51:49:104:53,51:1751,0,1959:1:.:1:.:.:.:-0.00044971	0/1:118.859:290:148:5631:144:5514:-416.906,0.0,-427.409:143:49:290:146,143:5287,0,5333:.:1:1:.:.:.:-0.00653895
chr8	71037103	.	T	TA	430.163	REJECT	NS=2;DP=172;DPB=210.6;AC=2;AN=4;AF=0.5;RO=133;AO=25;PRO=43.1667;PAO=22.1667;QR=4940;QA=879;PQR=1557.5;PQA=774.5;SRF=20;SRR=113;SAF=3;SAR=22;SRP=144.221;SAP=34.3664;AB=0.145349;ABP=190.918;RUN=1;RPP=3.09716;RPPR=16.7412;RPL=13.0;RPR=12.0;EPP=3.09716;EPPR=3.02663;DPRA=0.0;ODDS=10.9229;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992481;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:47.4376:40:32:1195:5:167:-6.44009,0.0,-119.015:5:13:39:.:.:1:.:.:.:-0.00044971	0/1:144.528:132:101:3745:20:712:-44.6607,0.0,-368.207:20:16:128:.:.:1:.:.:.:-0.00653895
chr8	71037103	.	TA	T	430.163	REJECT	NS=2;DP=172;DPB=210.6;AC=2;AN=2;AF=0.0;RO=133;AO=9;PRO=43.1667;PAO=13.6667;QR=4940;QA=322;PQR=1557.5;PQA=478.0;SRF=20;SRR=113;SAF=3;SAR=6;SRP=144.221;SAP=5.18177;AB=0.0523256;ABP=302.421;RUN=1;RPP=3.25157;RPPR=16.7412;RPL=5.0;RPR=4.0;EPP=5.18177;EPPR=3.02663;DPRA=0.0;ODDS=10.9229;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992481;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.4376:40:32:1195:2:70:-6.44009,-12.887,-151.536:2:5:39:.:.:1:.:.:.:-0.00044971	./1:144.528:132:101:3745:7:252:-44.6607,-50.1127,-448.266:7:5:128:.:.:1:.:.:.:-0.00653895
chr8	71075113	.	T	C	3592.79	REJECT	NS=2;DP=275;DPB=318.0;AC=2;AN=4;AF=0.5;RO=160;AO=155;PRO=0.0;PAO=0.0;QR=5887;QA=5401;PQR=0.0;PQA=0.0;SRF=21;SRR=139;SAF=26;SAR=129;SRP=191.983;SAP=151.637;AB=0.487421;ABP=3.44733;RUN=1;RPP=109.048;RPPR=179.388;RPL=121.0;RPR=34.0;EPP=33.9573;EPPR=98.7722;DPRA=0.0;ODDS=203.818;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.7871;MQMR=59.9375;PAIRED=0.987097;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.509;Dels=0.0;FS=1.6435;HaplotypeScore=36.7301;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.354;QD=15.635;ReadPosRankSum=0.8775;SOR=0.6145;ClippingRankSum=0.175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:43:1496:39:1348:-99.201,0.0,-112.529:36:47:77:38,34:1181,0,1297:1:.:1:.:.:.:-0.00044971	0/1:129.501:233:117:4391:116:4053:-301.538,0.0,-332.438:115:49:232:117,114:3569,0,4231:.:1:1:.:.:.:-0.00653895
chr8	77694368	.	GTTTC	TTTTT	105.62	REJECT	SOMATIC;NS=2;DP=238;DPB=261.4;AC=1;AN=4;AF=0.25;RO=198;AO=18;PRO=44.0;PAO=0.0;QR=7131;QA=240;PQR=1087.0;PQA=0.0;SRF=126;SRR=72;SAF=18;SAR=0;SRP=34.9902;SAP=42.0968;AB=0.0706522;ABP=297.622;RUN=1;RPP=10.7311;RPPR=263.104;RPL=13.0;RPR=5.0;EPP=10.7311;EPPR=39.9034;DPRA=0.0;ODDS=9.40273;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=4.5;LEN=5;MQM=56.1111;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989899;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:40.8359:54:45:1625:5:70:0.0,-2.09516,-153.77:5:10:50:.:.:0:.:.:.:-0.00044971	0/1:105.612:184:153:5506:13:170:-19.2645,0.0,-518.285:13:8:166:.:.:1:.:.:.:-0.00653895
chr8	77745635	.	G	A	2910.02	PASS	SOMATIC;NS=2;DP=411;DPB=411.0;AC=1;AN=3;AF=0.25;RO=303;AO=108;PRO=0.0;PAO=0.0;QR=11643;QA=4202;PQR=0.0;PQA=0.0;SRF=112;SRR=191;SAF=38;SAR=70;SRP=47.7369;SAP=23.5991;AB=0.369863;ABP=45.9638;RUN=1;RPP=8.15749;RPPR=17.5226;RPL=62.0;RPR=46.0;EPP=3.332;EPPR=13.9107;DPRA=2.45378;ODDS=74.2979;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.748;Dels=0.0;FS=0.0;HaplotypeScore=3.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.419;QD=13.05;ReadPosRankSum=0.064;SOR=0.679	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:115:119:4464:0:0:0.0,-31.8412,-401.346:0:0:115:111,0:.:0.0:0:.:.:.:0:.:.:0:-0.00044971	0/1:129.501:291:184:7179:108:4202:-298.838,0.0,-566.605:108:37:291:175,104:39.0:0.373:2:3827,0,7121:.:1:1:.:.:1:-0.00653895
chr8	77765865	.	C	T	4059.5	PASS	SOMATIC;NS=2;DP=438;DPB=438.0;AC=1;AN=3;AF=0.25;RO=290;AO=148;PRO=0.0;PAO=0.0;QR=11091;QA=5603;PQR=0.0;PQA=0.0;SRF=134;SRR=156;SAF=68;SAR=80;SRP=6.63441;SAP=5.12308;AB=0.43787;ABP=14.3431;RUN=1;RPP=4.47751;RPPR=4.47792;RPL=79.0;RPR=69.0;EPP=10.1116;EPPR=4.47792;DPRA=3.38;ODDS=63.3722;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993103;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.372;Dels=0.0;FS=0.399;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.423;QD=15.49;ReadPosRankSum=-1.208;SOR=0.655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:98:100:3816:0:0:0.0,-27.0962,-343.487:0:0:98:97,0:.:0.0:0:.:.:.:0:.:.:0:-0.00044971	0/1:129.501:337:190:7275:148:5603:-412.441,0.0,-562.812:148:44:337:183,143:37.0:0.437:2:5250,0,7120:.:1:1:.:.:1:-0.00653895
chr8	80678865	.	C	A	3901.9300000000003	REJECT	NS=2;DP=269;DPB=309.0;AC=2;AN=4;AF=0.5;RO=167;AO=142;PRO=0.0;PAO=0.0;QR=6307;QA=5438;PQR=0.0;PQA=0.0;SRF=106;SRR=61;SAF=90;SAR=52;SRP=29.341;SAP=25.092;AB=0.459547;ABP=7.40244;RUN=1;RPP=32.6157;RPPR=8.74455;RPL=49.0;RPR=93.0;EPP=14.9993;EPPR=6.76812;DPRA=0.0;ODDS=225.16;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988024;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3955;Dels=0.0;FS=0.689;HaplotypeScore=1.9456;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3965;QD=15.97;ReadPosRankSum=0.2035;SOR=0.7475;ClippingRankSum=0.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.979:78:44:1673:36:1355:-100.324,0.0,-128.947:35:44:78:43,34:1201,0,1510:1:.:1:.:.:.:-0.00044971	0/1:119.979:229:123:4634:106:4083:-305.316,0.0,-354.828:106:46:229:123,106:3898,0,4452:.:1:1:.:.:.:-0.00653895
chr8	87027866	.	T	C	12658.75	REJECT	NS=2;DP=339;DPB=385.0;AC=4;AN=4;AF=1.0;RO=0;AO=382;PRO=0.0;PAO=0.0;QR=0;QA=14569;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=138;SRP=0.0;SAP=66.8811;AB=0.0;ABP=0.0;RUN=1;RPP=10.3774;RPPR=0.0;RPL=173.0;RPR=209.0;EPP=35.8439;EPPR=0.0;DPRA=0.0;ODDS=59.8904;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992147;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.6246;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.85;SOR=1.363	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.5245:88:0:0:89:3439:-309.599,-24.135,0.0:87:100:87:0,86:3524,258,0:1:.:1:.:.:.:-0.00044971	1/1:124.5245:294:0:0:293:11130:-1001.02,-79.2825,0.0:292:100:292:0,292:12386,855,0:.:1:1:.:.:.:-0.00653895
chr8	90955624	.	T	A	971.9	REJECT	NS=2;DP=219;DPB=245.0;AC=2;AN=4;AF=0.5;RO=188;AO=57;PRO=0.0;PAO=0.0;QR=7077;QA=2124;PQR=0.0;PQA=0.0;SRF=54;SRR=134;SAF=18;SAR=39;SRP=76.9328;SAP=19.8106;AB=0.232653;ABP=155.111;RUN=1;RPP=60.9543;RPPR=147.898;RPL=48.0;RPR=9.0;EPP=3.35316;EPPR=21.4909;DPRA=0.0;ODDS=109.789;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982456;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.075;Dels=0.0;FS=0.886;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.479;QD=9.98;ReadPosRankSum=-0.081;SOR=0.5855;ClippingRankSum=0.815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.8975:50:25:959:26:958:-72.4965,0.0,-72.5794:25:50:50:25,25:855,0,928:1:.:1:.:.:.:-0.00044971	0/1:124.8975:193:163:6118:31:1166:-52.3903,0.0,-497.878:30:16:193:163,30:689,0,6211:.:1:1:.:.:.:-0.00653895
chr8	90958422	.	T	C	1666.48	REJECT	NS=2;DP=375;DPB=431.0;AC=2;AN=4;AF=0.5;RO=347;AO=84;PRO=0.0;PAO=0.0;QR=13201;QA=3213;PQR=0.0;PQA=0.0;SRF=194;SRR=153;SAF=40;SAR=44;SRP=13.5297;SAP=3.42391;AB=0.194896;ABP=351.499;RUN=1;RPP=4.66476;RPPR=3.06662;RPL=46.0;RPR=38.0;EPP=3.42391;EPPR=3.31693;DPRA=0.0;ODDS=54.2045;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991354;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.245;Dels=0.0;FS=3.514;HaplotypeScore=11.6869;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7395;QD=8.405;ReadPosRankSum=0.657;SOR=0.58;ClippingRankSum=0.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.2525:111:60:2237:52:1984:-148.218,0.0,-171.015:52:46:111:59,52:1759,0,1973:1:.:1:.:.:.:-0.00044971	0/1:123.2525:319:287:10964:32:1229:-24.161,0.0,-899.775:32:10:319:287,32:419,0,11288:.:1:1:.:.:.:-0.00653895
chr8	90958530	.	T	C	708.0554999999999	REJECT	NS=2;DP=280;DPB=315.0;AC=2;AN=4;AF=0.5;RO=265;AO=50;PRO=0.0;PAO=0.0;QR=10223;QA=1886;PQR=0.0;PQA=0.0;SRF=92;SRR=173;SAF=19;SAR=31;SRP=56.7727;SAP=9.26414;AB=0.15873;ABP=321.665;RUN=1;RPP=24.0302;RPPR=39.7942;RPL=36.0;RPR=14.0;EPP=3.70517;EPPR=5.37843;DPRA=0.0;ODDS=53.0269;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.98;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988679;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4765;Dels=0.0;FS=1.3715;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.42;QD=5.78;ReadPosRankSum=0.3185;SOR=0.5075;ClippingRankSum=0.147	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:66:46:1758:22:855:-58.5627,0.0,-139.882:21:32:66:44,21:680,0,1608:1:.:1:.:.:.:-0.00044971	0/1:129.501:246:219:8465:28:1031:-25.8382,0.0,-694.569:28:11:246:217,28:402,0,8660:.:1:1:.:.:.:-0.00653895
chr8	90967711	.	A	G	1667.8049999999998	REJECT	NS=2;DP=366;DPB=414.0;AC=2;AN=4;AF=0.5;RO=326;AO=88;PRO=0.0;PAO=0.0;QR=12669;QA=3415;PQR=0.0;PQA=0.0;SRF=145;SRR=181;SAF=39;SAR=49;SRP=11.6429;SAP=5.47788;AB=0.21256;ABP=300.114;RUN=1;RPP=25.2185;RPPR=5.16845;RPL=59.0;RPR=29.0;EPP=3.40511;EPPR=5.67468;DPRA=0.0;ODDS=134.018;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=0.98773;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1735;Dels=0.0;FS=4.5925;HaplotypeScore=6.8794;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2435;QD=9.38;ReadPosRankSum=0.229;SOR=0.778;ClippingRankSum=1.584	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:48:1804:46:1777:-134.501,0.0,-136.916:45:49:92:46,45:1493,0,1594:1:.:1:.:.:.:-0.00044971	0/1:129.501:319:278:10865:42:1638:-60.6218,0.0,-890.523:42:13:319:277,42:878,0,11186:.:1:1:.:.:.:-0.00653895
chr8	90970935	.	G	A	1615.28	REJECT	NS=2;DP=263;DPB=310.0;AC=2;AN=4;AF=0.5;RO=233;AO=77;PRO=0.0;PAO=0.0;QR=8818;QA=2867;PQR=0.0;PQA=0.0;SRF=169;SRR=64;SAF=56;SAR=21;SRP=105.759;SAP=37.5565;AB=0.248387;ABP=173.478;RUN=1;RPP=37.5565;RPPR=76.831;RPL=21.0;RPR=56.0;EPP=3.71532;EPPR=4.58532;DPRA=0.0;ODDS=63.5381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987013;PAIREDR=0.991416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4495;Dels=0.0;FS=1.5485;HaplotypeScore=2.9575;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.307;QD=9.845;ReadPosRankSum=-1.0125;SOR=0.552;ClippingRankSum=0.712	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4775:92:43:1640:50:1888:-144.756,0.0,-122.425:49:53:92:43,49:1682,0,1568:1:.:1:.:.:.:-0.00044971	0/1:119.4775:217:190:7178:27:979:-29.3404,0.0,-586.989:27:12:217:190,27:442,0,7374:.:1:1:.:.:.:-0.00653895
chr8	90990479	.	C	G	2567.7200000000003	REJECT	NS=2;DP=404;DPB=467.0;AC=2;AN=4;AF=0.5;RO=346;AO=121;PRO=0.0;PAO=0.0;QR=13164;QA=4630;PQR=0.0;PQA=0.0;SRF=192;SRR=154;SAF=62;SAR=59;SRP=12.0727;SAP=3.17181;AB=0.259101;ABP=238.408;RUN=1;RPP=5.18177;RPPR=7.93063;RPL=55.0;RPR=66.0;EPP=7.04816;EPPR=6.62524;DPRA=0.0;ODDS=190.67;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983471;PAIREDR=0.991329;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2365;Dels=0.0;FS=1.754;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2825;QD=11.46;ReadPosRankSum=-0.0105;SOR=0.6425;ClippingRankSum=1.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4585:121:55:2075:70:2665:-205.963,0.0,-152.879:69:57:121:50,68:2326,0,1695:1:.:1:.:.:.:-0.00044971	0/1:118.4585:341:291:11089:51:1965:-84.1595,0.0,-904.739:51:15:341:290,51:1206,0,11264:.:1:1:.:.:.:-0.00653895
chr8	90995019	.	C	T	1642.98	REJECT	NS=2;DP=417;DPB=479.0;AC=2;AN=4;AF=0.5;RO=391;AO=87;PRO=0.0;PAO=0.0;QR=15104;QA=3339;PQR=0.0;PQA=0.0;SRF=178;SRR=213;SAF=47;SAR=40;SRP=9.81351;SAP=4.23331;AB=0.181628;ABP=424.725;RUN=1;RPP=4.23331;RPPR=4.25987;RPL=47.0;RPR=40.0;EPP=12.0207;EPPR=87.0313;DPRA=0.0;ODDS=40.7584;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988506;PAIREDR=0.997442;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.337;Dels=0.0;FS=5.0665;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.7315;QD=7.39;ReadPosRankSum=0.5445;SOR=0.727;ClippingRankSum=0.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3515:123:71:2709:53:2064:-152.146,0.0,-210.183:52:42:123:71,52:1745,0,2450:1:.:1:.:.:.:-0.00044971	0/1:117.3515:355:320:12395:34:1275:-18.7993,0.0,-1018.92:34:10:354:320,34:363,0,12806:.:1:1:.:.:.:-0.00653895
chr8	93088151	.	C	T	5888.91	REJECT	NS=2;DP=230;DPB=259.0;AC=2;AN=4;AF=0.5;RO=65;AO=194;PRO=0.0;PAO=0.0;QR=2487;QA=7614;PQR=0.0;PQA=0.0;SRF=39;SRR=26;SAF=125;SAR=69;SRP=8.65613;SAP=38.112;AB=0.749035;ABP=142.529;RUN=1;RPP=153.625;RPPR=43.9342;RPL=39.0;RPR=155.0;EPP=6.63688;EPPR=3.84548;DPRA=0.0;ODDS=130.623;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984536;PAIREDR=0.969231;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.67;Dels=0.0;FS=2.5015;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.429;QD=23.445;ReadPosRankSum=1.139;SOR=0.711;ClippingRankSum=-1.527	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:32:1215:23:884:-64.7139,0.0,-94.559:23:42:55:32,23:740,0,1161:1:.:1:.:.:.:-0.00044971	0/1:129.501:202:33:1272:171:6730:-550.132,0.0,-59.1449:170:84:202:32,169:6853,0,780:.:1:1:.:.:.:-0.00653895
chr8	108970367	.	A	G	5921.435	REJECT	NS=2;DP=364;DPB=417.0;AC=2;AN=4;AF=0.5;RO=206;AO=211;PRO=0.0;PAO=0.0;QR=8002;QA=8077;PQR=0.0;PQA=0.0;SRF=100;SRR=106;SAF=118;SAR=93;SRP=3.38978;SAP=9.44239;AB=0.505995;ABP=3.14048;RUN=1;RPP=9.44239;RPPR=11.2745;RPL=93.0;RPR=118.0;EPP=3.8439;EPPR=4.52822;DPRA=0.0;ODDS=329.258;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.128;Dels=0.0;FS=4.651;HaplotypeScore=4.856;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.465;QD=18.16;ReadPosRankSum=-0.432;SOR=0.872;ClippingRankSum=-0.615	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:50:1909:54:2061:-157.333,0.0,-143.65:53:52:102:48,53:1825,0,1673:1:.:1:.:.:.:-0.00044971	0/1:129.501:312:156:6093:157:6016:-456.327,0.0,-463.228:157:50:312:155,157:5809,0,5856:.:1:1:.:.:.:-0.00653895
chr8	109009081	.	T	C	5315.97	REJECT	NS=2;DP=325;DPB=363.0;AC=2;AN=4;AF=0.5;RO=174;AO=189;PRO=0.0;PAO=0.0;QR=6640;QA=7242;PQR=0.0;PQA=0.0;SRF=106;SRR=68;SAF=105;SAR=84;SRP=21.031;SAP=8.07707;AB=0.520661;ABP=4.35625;RUN=1;RPP=144.57;RPPR=91.0673;RPL=39.0;RPR=150.0;EPP=3.94093;EPPR=8.00219;DPRA=0.0;ODDS=208.958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989418;PAIREDR=0.988506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.638;Dels=0.0;FS=3.5535;HaplotypeScore=8.7807;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.587;QD=18.52;ReadPosRankSum=-0.0645;SOR=0.495;ClippingRankSum=1.077	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:33:1257:42:1607:-124.372,0.0,-92.8492:41:55:74:33,41:1386,0,1140:1:.:1:.:.:.:-0.00044971	0/1:129.501:287:141:5383:147:5635:-428.851,0.0,-406.198:147:51:287:140,147:5465,0,5117:.:1:1:.:.:.:-0.00653895
chr8	109500880	.	G	A	5649.98	REJECT	NS=2;DP=372;DPB=434.0;AC=2;AN=4;AF=0.5;RO=225;AO=209;PRO=0.0;PAO=0.0;QR=8535;QA=8053;PQR=0.0;PQA=0.0;SRF=99;SRR=126;SAF=102;SAR=107;SRP=10.0459;SAP=3.27005;AB=0.481567;ABP=4.29117;RUN=1;RPP=7.59221;RPPR=3.79203;RPL=94.0;RPR=115.0;EPP=17.234;EPPR=10.0459;DPRA=0.0;ODDS=402.936;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6155;Dels=0.0;FS=9.314;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8385;QD=17.115;ReadPosRankSum=0.749;SOR=1.078;ClippingRankSum=-0.575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.905:124:61:2333:63:2450:-186.888,0.0,-176.337:63:51:124:61,63:2149,0,2029:1:.:1:.:.:.:-0.00044971	0/1:119.905:310:164:6202:146:5603:-420.014,0.0,-474.288:146:47:310:164,146:5339,0,5989:.:1:1:.:.:.:-0.00653895
chr8	117000266	.	G	GA	51.0858	REJECT	NS=2;DP=222;DPB=247.176;AC=2;AN=2;AF=0.0;RO=175;AO=20;PRO=30.5;PAO=16.5;QR=6602;QA=658;PQR=1098.67;PQA=584.667;SRF=25;SRR=150;SAF=5;SAR=15;SRP=196.892;SAP=13.8677;AB=0.0988372;ABP=243.438;RUN=1;RPP=13.8677;RPPR=43.3252;RPL=15.0;RPR=5.0;EPP=3.0103;EPPR=4.51172;DPRA=0.0;ODDS=10.3552;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988571;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:44.9591:50:44:1634:3:113:0.0,-3.11408,-143.807:3:6:49:.:.:1:.:.:.:-0.00044971	./1:48.0163:172:131:4968:17:545:-11.5279,-5.84251,-449.029:17:10:165:.:.:1:.:.:.:-0.00653895
chr8	117000266	.	GA	G	51.0858	REJECT	NS=2;DP=222;DPB=247.176;AC=2;AN=3;AF=0.25;RO=175;AO=19;PRO=30.5;PAO=15.0;QR=6602;QA=699;PQR=1098.67;PQA=535.667;SRF=25;SRR=150;SAF=3;SAR=16;SRP=196.892;SAP=22.325;AB=0.0988372;ABP=243.438;RUN=1;RPP=5.8675;RPPR=43.3252;RPL=12.0;RPR=7.0;EPP=3.12459;EPPR=4.51172;DPRA=0.0;ODDS=10.3552;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988571;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:44.9591:50:44:1634:2:77:0.0,-6.62969,-153.72:2:4:49:.:.:1:.:.:.:-0.00044971	0/1:48.0163:172:131:4968:17:622:-11.5279,0.0,-452.957:17:10:165:.:.:1:.:.:.:-0.00653895
chr8	117864952	.	T	TA	424.774	REJECT	NS=2;DP=152;DPB=191.68;AC=2;AN=3;AF=0.25;RO=84;AO=19;PRO=25.5667;PAO=12.0667;QR=3147;QA=593;PQR=906.667;PQA=405.417;SRF=7;SRR=77;SAF=4;SAR=15;SRP=129.68;SAP=16.8392;AB=0.125;ABP=188.671;RUN=1;RPP=4.03889;RPPR=6.73282;RPL=11.0;RPR=8.0;EPP=5.8675;EPPR=3.1137;DPRA=0.0;ODDS=12.0227;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:51.8767:35:17:634:4:117:-11.0598,-7.66213,-71.9105:4:13:32:.:.:1:.:.:.:-0.00044971	0/1:107.191:117:67:2513:15:476:-39.0555,0.0,-234.638:15:15:98:.:.:1:.:.:.:-0.00653895
chr8	117864952	.	T	TAA	424.774	REJECT	NS=2;DP=152;DPB=191.68;AC=2;AN=2;AF=0.0;RO=84;AO=5;PRO=25.5667;PAO=11.5667;QR=3147;QA=142;PQR=906.667;PQA=383.917;SRF=7;SRR=77;SAF=0;SAR=5;SRP=129.68;SAP=13.8677;AB=0.0328947;ABP=291.073;RUN=1;RPP=3.44459;RPPR=6.73282;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=3.1137;DPRA=0.0;ODDS=12.0227;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=5;MEANALT=11.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:51.8767:35:17:634:2:50:-11.0598,-13.1579,-77.9487:2:6:32:.:.:1:.:.:.:-0.00044971	./1:107.191:117:67:2513:3:92:-39.0555,-38.5041,-276.904:3:3:98:.:.:1:.:.:.:-0.00653895
chr8	117864952	.	TA	T	424.774	REJECT	NS=2;DP=152;DPB=191.68;AC=2;AN=3;AF=0.25;RO=84;AO=16;PRO=25.5667;PAO=18.1667;QR=3147;QA=548;PQR=906.667;PQA=612.667;SRF=7;SRR=77;SAF=5;SAR=11;SRP=129.68;SAP=7.89611;AB=0.105263;ABP=208.729;RUN=1;RPP=5.18177;RPPR=6.73282;RPL=6.0;RPR=10.0;EPP=7.89611;EPPR=3.1137;DPRA=0.0;ODDS=12.0227;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:51.8767:35:17:634:5:169:-11.0598,0.0,-63.2204:5:16:32:.:.:1:.:.:.:-0.00044971	./1:107.191:117:67:2513:11:379:-39.0555,-12.7953,-277.579:11:11:98:.:.:1:.:.:.:-0.00653895
chr8	117864967	.	G	A	424.774	REJECT	NS=2;DP=152;DPB=191.68;AC=2;AN=2;AF=0.0;RO=84;AO=4;PRO=25.5667;PAO=15.5667;QR=3147;QA=82;PQR=906.667;PQA=480.917;SRF=7;SRR=77;SAF=3;SAR=1;SRP=129.68;SAP=5.18177;AB=0.0263158;ABP=299.245;RUN=1;RPP=3.0103;RPPR=6.73282;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=3.1137;DPRA=0.0;ODDS=12.0227;GTI=0;TYPE=snp;CIGAR=15M1X9M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:51.8767:35:17:634:2:54:-11.0598,-6.13477,-70.1335:2:6:32:.:.:1:.:.:.:-0.00044971	./1:107.191:117:67:2513:2:28:-39.0555,-43.0051,-281.451:2:2:98:.:.:1:.:.:.:-0.00653895
chr8	117864967	.	GAAAAATTTC	AGAAAAATTTA	424.774	REJECT	NS=2;DP=152;DPB=191.68;AC=2;AN=2;AF=0.0;RO=84;AO=2;PRO=25.5667;PAO=12.0667;QR=3147;QA=32;PQR=906.667;PQA=405.417;SRF=7;SRR=77;SAF=2;SAR=0;SRP=129.68;SAP=7.35324;AB=0.0571429;ABP=62.6327;RUN=1;RPP=7.35324;RPPR=6.73282;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=3.1137;DPRA=0.0;ODDS=12.0227;GTI=0;TYPE=complex;CIGAR=1M1I23M1X;NUMALT=5;MEANALT=8.0;LEN=26;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:51.8767:35:17:634:2:32:-11.0598,-14.7798,-79.5804:2:6:32:.:.:1:.:.:.:-0.00044971	./1:107.191:117:67:2513:0:0:-39.0555,-38.7806,-277.45:0:0:98:.:.:1:.:.:.:-0.00653895
chr8	123041540	.	A	G	5817.280000000001	REJECT	NS=2;DP=383;DPB=443.0;AC=2;AN=4;AF=0.5;RO=234;AO=209;PRO=0.0;PAO=0.0;QR=9124;QA=8103;PQR=0.0;PQA=0.0;SRF=130;SRR=104;SAF=112;SAR=97;SRP=9.28344;SAP=5.34801;AB=0.471783;ABP=6.07389;RUN=1;RPP=5.34801;RPPR=3.15878;RPL=97.0;RPR=112.0;EPP=10.5845;EPPR=3.15878;DPRA=0.0;ODDS=368.661;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985646;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9755;Dels=0.0;FS=5.807;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.08;QD=16.615;ReadPosRankSum=-0.248;SOR=0.8195;ClippingRankSum=-0.306	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.304:116:63:2468:55:2141:-160.689,0.0,-190.121:53:46:116:63,52:1871,0,2307:1:.:1:.:.:.:-0.00044971	0/1:118.304:324:171:6656:154:5962:-448.189,0.0,-510.628:153:47:324:171,153:5647,0,6485:.:1:1:.:.:.:-0.00653895
chr8	128649634	.	A	C	1797.325	REJECT	NS=2;DP=394;DPB=449.0;AC=2;AN=4;AF=0.5;RO=358;AO=90;PRO=0.0;PAO=0.0;QR=13731;QA=3431;PQR=0.0;PQA=0.0;SRF=167;SRR=191;SAF=42;SAR=48;SRP=6.50407;SAP=3.87889;AB=0.200445;ABP=352.966;RUN=1;RPP=5.42305;RPPR=3.22866;RPL=40.0;RPR=50.0;EPP=7.73928;EPPR=19.4116;DPRA=0.0;ODDS=88.7736;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.997207;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.198;Dels=0.0;FS=3.3075;HaplotypeScore=7.8295;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1165;QD=9.025;ReadPosRankSum=-1.9725;SOR=0.8395;ClippingRankSum=1.307	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.784:109:58:2262:52:1978:-148.208,0.0,-173.786:52:47:109:57,52:1812,0,2026:1:.:1:.:.:.:-0.00044971	0/1:118.784:339:300:11469:38:1453:-39.2053,0.0,-939.993:38:11:338:300,38:648,0,11723:.:1:1:.:.:.:-0.00653895
chr8	128650439	.	CAAAAAA	C	64.1957	REJECT	NS=1;DP=25;DPB=53.1316;AC=1;AN=3;AF=0.0;RO=0;AO=3;PRO=31.0333;PAO=17.0333;QR=0;QA=57;PQR=917.967;PQA=536.967;SRF=0;SRR=0;SAF=2;SAR=1;SRP=0.0;SAP=3.73412;AB=0.12;ABP=34.3664;RUN=1;RPP=3.73412;RPPR=0.0;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=0.0;DPRA=0.0;ODDS=14.7816;GTI=0;TYPE=del;CIGAR=1M6D31M;NUMALT=4;MEANALT=11.0;LEN=6;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:62.5508:25:0:0:3:57:-10.7903,-7.84924,-33.7561:3:17:18:.:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.00653895
chr8	128650439	.	CAAAAAAA	C	64.1957	REJECT	NS=1;DP=25;DPB=53.1316;AC=1;AN=4;AF=0.5;RO=0;AO=9;PRO=31.0333;PAO=15.5333;QR=0;QA=192;PQR=917.967;PQA=492.467;SRF=0;SRR=0;SAF=4;SAR=5;SRP=0.0;SAP=3.25157;AB=0.36;ABP=7.26639;RUN=1;RPP=9.04217;RPPR=0.0;RPL=2.0;RPR=7.0;EPP=3.25157;EPPR=0.0;DPRA=0.0;ODDS=14.7816;GTI=0;TYPE=del;CIGAR=1M7D30M;NUMALT=4;MEANALT=11.0;LEN=7;MQM=61.1111;MQMR=0.0;PAIRED=0.888889;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.547;FS=5.401;MLEAC=1;MLEAF=0.5;MQ=52.73;MQRankSum=1.886;QD=11.72;ReadPosRankSum=0.041;SOR=1.164;ClippingRankSum=-0.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:80.7754:35:0:0:9:192:-10.7903,0.0,-30.1559:19:57:32:16,30:893,0,462:1:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00653895
chr8	128650439	.	CAAAAAAAAA	C	64.1957	REJECT	NS=1;DP=25;DPB=53.1316;AC=1;AN=3;AF=0.0;RO=0;AO=4;PRO=31.0333;PAO=10.2;QR=0;QA=87;PQR=917.967;PQA=353.8;SRF=0;SRR=0;SAF=1;SAR=3;SRP=0.0;SAP=5.18177;AB=0.16;ABP=28.1125;RUN=1;RPP=11.6962;RPPR=0.0;RPL=0.0;RPR=4.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=14.7816;GTI=0;TYPE=del;CIGAR=1M9D28M;NUMALT=4;MEANALT=11.0;LEN=9;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:62.5508:25:0:0:4:87:-10.7903,-20.7099,-149.957:4:22:18:.:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.00653895
chr8	128650439	.	CAAAAAAAAAA	C	64.1957	REJECT	NS=1;DP=25;DPB=53.1316;AC=1;AN=3;AF=0.0;RO=0;AO=2;PRO=31.0333;PAO=10.2;QR=0;QA=71;PQR=917.967;PQA=353.8;SRF=0;SRR=0;SAF=1;SAR=1;SRP=0.0;SAP=3.0103;AB=0.08;ABP=41.3151;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=14.7816;GTI=0;TYPE=del;CIGAR=1M10D27M;NUMALT=4;MEANALT=11.0;LEN=10;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:62.5508:25:0:0:2:71:-10.7903,-21.6127,-151.373:2:11:18:.:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.00653895
chr8	128650460	.	A	AAAAAAAAAAAG	653.73	PASS	DP=71;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.069;FS=2.615;MLEAC=1;MLEAF=0.5;MQ=55.36;MQRankSum=-0.363;QD=9.21;ReadPosRankSum=-3.282;SOR=1.125;ClippingRankSum=0.45	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49,13:62:99.0:691,0,1826:13:21:62:1:.:.:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00653895
chr8	128650492	.	C	G	1257.97	REJECT	NS=1;DP=133;DPB=133.0;AC=1;AN=4;AF=0.5;RO=82;AO=51;PRO=0.0;PAO=0.0;QR=2978;QA=1946;PQR=0.0;PQA=0.0;SRF=38;SRR=44;SAF=30;SAR=21;SRP=3.96363;SAP=6.45911;AB=0.383459;ABP=18.7004;RUN=1;RPP=49.3776;RPPR=15.8273;RPL=9.0;RPR=42.0;EPP=25.534;EPPR=5.65844;DPRA=0.0;ODDS=289.657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.5098;MQMR=59.878;PAIRED=0.980392;PAIREDR=0.963415;technology.ILLUMINA=1.0;BaseQRankSum=0.844;FS=12.101;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=1.403;QD=12.69;ReadPosRankSum=-0.416;SOR=0.955;ClippingRankSum=0.919	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7515:126:82:2978:51:1946:-138.201,0.0,-231.977:49:38:126:73,47:1589,0,2702:1:.:1:.:.:.:-0.00044971	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00653895
chr8	128653001	.	T	C	1596.135	REJECT	NS=2;DP=347;DPB=403.0;AC=2;AN=4;AF=0.5;RO=317;AO=86;PRO=0.0;PAO=0.0;QR=12097;QA=3324;PQR=0.0;PQA=0.0;SRF=155;SRR=162;SAF=41;SAR=45;SRP=3.34595;SAP=3.41429;AB=0.2134;ABP=290.534;RUN=1;RPP=4.62628;RPPR=5.48318;RPL=47.0;RPR=39.0;EPP=3.91929;EPPR=3.01715;DPRA=0.0;ODDS=167.605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996845;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.285;Dels=0.0;FS=4.2505;HaplotypeScore=7.7583;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.852;QD=7.85;ReadPosRankSum=0.563;SOR=0.9325;ClippingRankSum=0.655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:69:2605:42:1630:-116.644,0.0,-204.37:42:38:110:68,42:1379,0,2270:1:.:1:.:.:.:-0.00044971	0/1:129.501:291:248:9492:44:1694:-73.2972,0.0,-774.707:44:15:291:247,44:1024,0,9689:.:1:1:.:.:.:-0.00653895
chr8	128653726	.	T	C	1188.04	REJECT	NS=2;DP=363;DPB=411.0;AC=2;AN=4;AF=0.5;RO=342;AO=69;PRO=0.0;PAO=0.0;QR=13180;QA=2629;PQR=0.0;PQA=0.0;SRF=196;SRR=146;SAF=38;SAR=31;SRP=18.8836;SAP=4.55236;AB=0.167883;ABP=396.776;RUN=1;RPP=3.29354;RPPR=17.6392;RPL=36.0;RPR=33.0;EPP=12.1053;EPPR=35.9253;DPRA=0.0;ODDS=26.9064;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985507;PAIREDR=0.997076;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.602;Dels=0.0;FS=3.456;HaplotypeScore=1.9652;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0335;QD=7.225;ReadPosRankSum=-0.776;SOR=0.4805;ClippingRankSum=1.212	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:55:2103:40:1545:-113.331,0.0,-163.553:39:41:94:55,39:1331,0,1749:1:.:1:.:.:.:-0.00044971	0/1:107.88:316:287:11077:29:1084:-11.9163,0.0,-910.732:29:9:316:287,29:262,0,11445:.:1:1:.:.:.:-0.00653895
chr8	128750540	.	A	G	2205.58	PASS	SOMATIC;NS=2;DP=390;DPB=390.0;AC=1;AN=3;AF=0.25;RO=301;AO=88;PRO=0.0;PAO=0.0;QR=11448;QA=3412;PQR=0.0;PQA=0.0;SRF=131;SRR=170;SAF=41;SAR=47;SRP=13.9831;SAP=3.89863;AB=0.294314;ABP=112.884;RUN=1;RPP=3.109;RPPR=5.0952;RPL=43.0;RPR=45.0;EPP=4.58955;EPPR=3.07523;DPRA=3.28571;ODDS=57.1103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993355;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.991;Dels=0.0;FS=2.152;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.661;QD=9.72;ReadPosRankSum=-0.685;SOR=0.546	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.215:90:90:3383:0:0:0.0,-24.3767,-304.547:0:0:89:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.00044971	0/1:121.6075:299:211:8065:88:3412:-225.901,0.0,-644.449:88:29:299:204,86:38.0:0.301:2:2936,0,8154:.:1:1:.:.:1:-0.00653895
chr8	128751902	.	A	AT	636.159	REJECT	NS=2;DP=270;DPB=393.276;AC=2;AN=4;AF=0.5;RO=169;AO=30;PRO=114.333;PAO=84.3333;QR=6258;QA=1108;PQR=4071.17;PQA=2952.17;SRF=95;SRR=74;SAF=12;SAR=18;SRP=8.67669;SAP=5.61607;AB=0.111111;ABP=357.684;RUN=1;RPP=4.16842;RPPR=17.0028;RPL=13.0;RPR=17.0;EPP=4.16842;EPPR=6.72365;DPRA=0.0;ODDS=14.8648;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:64.5569:72:45:1673:7:260:-7.13894,0.0,-161.35:7:13:56:.:.:1:.:.:.:-0.00044971	0/1:132.378:198:124:4585:23:848:-61.7771,0.0,-471.7:23:14:165:.:.:1:.:.:.:-0.00653895
chr8	128751902	.	AT	A	636.159	REJECT	NS=2;DP=270;DPB=393.276;AC=2;AN=2;AF=0.0;RO=169;AO=22;PRO=114.333;PAO=71.3333;QR=6258;QA=759;PQR=4071.17;PQA=2444.67;SRF=95;SRR=74;SAF=14;SAR=8;SRP=8.67669;SAP=6.56362;AB=0.0814815;ABP=413.789;RUN=1;RPP=3.40511;RPPR=17.0028;RPL=12.0;RPR=10.0;EPP=3.40511;EPPR=6.72365;DPRA=0.0;ODDS=14.8648;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.5569:72:45:1673:4:110:-7.13894,-9.98848,-178.19:4:7:56:.:.:1:.:.:.:-0.00044971	./1:132.378:198:124:4585:18:649:-61.7771,-47.2351,-602.783:18:11:165:.:.:1:.:.:.:-0.00653895
chr8	128752212	.	C	T	481.051	REJECT	NS=2;DP=140;DPB=239.107;AC=2;AN=2;AF=0.0;RO=59;AO=21;PRO=67.85;PAO=19.1;QR=2047;QA=282;PQR=2370.68;PQA=532.033;SRF=20;SRR=39;SAF=0;SAR=21;SRP=16.2968;SAP=48.6112;AB=0.15;ABP=151.973;RUN=1;RPP=8.07707;RPPR=22.4799;RPL=7.0;RPR=14.0;EPP=8.07707;EPPR=3.93042;DPRA=0.0;ODDS=14.9122;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.3729;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.7549:37:19:660:5:46:-7.3448,-38.012,-455.273:5:15:33:.:.:1:.:.:.:-0.00044971	./1:133.624:103:40:1387:16:236:-47.5199,-106.598,-958.871:16:18:91:.:.:1:.:.:.:-0.00653895
chr8	128752212	.	C	CT	481.051	REJECT	NS=2;DP=140;DPB=239.107;AC=2;AN=2;AF=0.0;RO=59;AO=10;PRO=67.85;PAO=32.85;QR=2047;QA=205;PQR=2370.68;PQA=1114.68;SRF=20;SRR=39;SAF=2;SAR=8;SRP=16.2968;SAP=10.8276;AB=0.0714286;ABP=226.362;RUN=1;RPP=3.87889;RPPR=22.4799;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=3.93042;DPRA=0.0;ODDS=14.9122;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.3729;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.7549:37:19:660:2:44:-7.3448,-9.26292,-92.047:2:6:33:.:.:1:.:.:.:-0.00044971	./1:133.624:103:40:1387:8:161:-47.5199,-45.6069,-240.687:8:9:91:.:.:1:.:.:.:-0.00653895
chr8	128752212	.	CT	C	481.051	REJECT	NS=2;DP=140;DPB=239.107;AC=2;AN=4;AF=0.5;RO=59;AO=22;PRO=67.85;PAO=44.85;QR=2047;QA=503;PQR=2370.68;PQA=1456.18;SRF=20;SRR=39;SAF=4;SAR=18;SRP=16.2968;SAP=22.3561;AB=0.157143;ABP=145.955;RUN=1;RPP=3.0103;RPPR=22.4799;RPL=11.0;RPR=11.0;EPP=4.58955;EPPR=3.93042;DPRA=0.0;ODDS=14.9122;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.3729;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.343;FS=1.744;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.245;QD=1.31;ReadPosRankSum=0.785;SOR=1.244;ClippingRankSum=0.932	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:81.87745:38:19:660:4:100:-7.3448,0.0,-99.5408:8:21:36:27,12:121,0,579:1:.:1:.:.:.:-0.00044971	0/1:133.624:103:40:1387:18:403:-47.5199,0.0,-195.551:18:20:91:.:.:.:.:1:.:.:.:-0.00653895
chr8	128752212	.	CTT	C	481.051	REJECT	NS=2;DP=140;DPB=239.107;AC=2;AN=2;AF=0.0;RO=59;AO=6;PRO=67.85;PAO=28.85;QR=2047;QA=191;PQR=2370.68;PQA=960.183;SRF=20;SRR=39;SAF=2;SAR=4;SRP=16.2968;SAP=4.45795;AB=0.0428571;ABP=257.135;RUN=1;RPP=8.80089;RPPR=22.4799;RPL=5.0;RPR=1.0;EPP=3.0103;EPPR=3.93042;DPRA=0.0;ODDS=14.9122;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=5;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=59.3729;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.13;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=0.762;QD=0.27;RPA=15,13;RU=T;ReadPosRankSum=0.578;SOR=0.742;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.7549:37:19:660:2:70:-7.3448,-10.6295,-137.151:2:6:33:.:.:.:.:1:.:.:.:-0.00044971	./1:113.312:154:40:1387:4:121:-47.5199,-52.9883,-255.311:11:9:111:113,18:93,0,2935:.:1:1:.:.:.:-0.00653895
chr8	128752212	.	CTTT	C	481.051	REJECT	NS=2;DP=140;DPB=239.107;AC=2;AN=2;AF=0.0;RO=59;AO=6;PRO=67.85;PAO=23.5;QR=2047;QA=177;PQR=2370.68;PQA=788.233;SRF=20;SRR=39;SAF=3;SAR=3;SRP=16.2968;SAP=3.0103;AB=0.0428571;ABP=257.135;RUN=1;RPP=4.45795;RPPR=22.4799;RPL=4.0;RPR=2.0;EPP=8.80089;EPPR=3.93042;DPRA=0.0;ODDS=14.9122;GTI=0;TYPE=del;CIGAR=1M3D24M;NUMALT=5;MEANALT=12.5;LEN=3;MQM=60.0;MQMR=59.3729;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.7549:37:19:660:1:35:-7.3448,-20.9999,-201.88:1:3:33:.:.:1:.:.:.:-0.00044971	./1:133.624:103:40:1387:5:142:-47.5199,-62.3682,-342.673:5:5:91:.:.:1:.:.:.:-0.00653895
chr8	135001704	.	A	G	3043.605	REJECT	NS=2;DP=207;DPB=240.0;AC=2;AN=4;AF=0.5;RO=125;AO=115;PRO=0.0;PAO=0.0;QR=4751;QA=4358;PQR=0.0;PQA=0.0;SRF=67;SRR=58;SAF=71;SAR=44;SRP=4.41741;SAP=16.7755;AB=0.479167;ABP=3.91508;RUN=1;RPP=64.3591;RPPR=48.1943;RPL=29.0;RPR=86.0;EPP=7.25883;EPPR=3.02767;DPRA=0.0;ODDS=204.166;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3825;Dels=0.0;FS=3.7545;HaplotypeScore=5.8769;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.53;QD=16.785;ReadPosRankSum=1.3035;SOR=1.038;ClippingRankSum=-1.815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.563:66:34:1297:32:1219:-91.8914,0.0,-98.9223:32:48:66:34,32:1123,0,1250:1:.:1:.:.:.:-0.00044971	0/1:124.563:174:91:3454:83:3139:-235.295,0.0,-263.631:83:48:174:91,83:2982,0,3335:.:1:1:.:.:.:-0.00653895
chr9	2029018	.	G	A	1836.98	PASS	SOMATIC;NS=2;DP=296;DPB=296.0;AC=1;AN=3;AF=0.25;RO=220;AO=76;PRO=0.0;PAO=0.0;QR=8400;QA=2831;PQR=0.0;PQA=0.0;SRF=178;SRR=42;SAF=61;SAR=15;SRP=185.572;SAP=63.4687;AB=0.353488;ABP=43.0967;RUN=1;RPP=16.8392;RPPR=11.8936;RPL=27.0;RPR=49.0;EPP=3.0103;EPPR=6.20829;DPRA=2.65432;ODDS=51.5642;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986364;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.742;Dels=0.0;FS=1.371;HaplotypeScore=11.7215;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.063;QD=11.78;ReadPosRankSum=-1.083;SOR=0.841	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.874:80:81:3092:0:0:0.0,-21.9681,-278.414:0:0:80:79,0:.:0.0:0:.:.:.:0:.:.:0:0.000972382	0/1:122.937:214:139:5308:76:2831:-196.462,0.0,-419.287:76:35:214:135,71:37.0:0.335:2:2550,0,5252:.:1:1:.:.:1:-0.033653
chr9	2029199	.	G	A	10416.585	REJECT	NS=2;DP=411;DPB=473.0;AC=3;AN=4;AF=0.75;RO=109;AO=364;PRO=0.0;PAO=0.0;QR=4165;QA=13955;PQR=0.0;PQA=0.0;SRF=49;SRR=60;SAF=177;SAR=187;SRP=5.42083;SAP=3.60686;AB=0.688571;ABP=111.112;RUN=1;RPP=3.03416;RPPR=8.76769;RPL=181.0;RPR=183.0;EPP=21.7184;EPPR=13.5489;DPRA=0.0;ODDS=77.6787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9451;MQMR=60.0;PAIRED=0.994505;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.026;Dels=0.0;FS=1.5575;HaplotypeScore=10.6591;MLEAC=1;MLEAF=0.75;MQ=59.975;MQRankSum=-0.203;QD=28.605;ReadPosRankSum=0.963;SOR=0.6615	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.571:121:0:0:123:4684:-421.512,-33.3095,0.0:121:100:121:0,120:4868,360,0:1:.:1:.:.:.:0.000972382	0/1:125.571:349:109:4165:241:9271:-739.074,0.0,-279.797:240:69:349:109,240:9335,0,3570:.:1:1:.:.:.:-0.033653
chr9	2039776	.	ACAG	A	3082.6	REJECT	NS=2;DP=173;DPB=288.439;AC=2;AN=3;AF=0.625;RO=32;AO=111;PRO=95.8333;PAO=90.8333;QR=1225;QA=3923;PQR=3523.5;PQA=3334.5;SRF=15;SRR=17;SAF=71;SAR=40;SRP=3.28173;SAP=21.8102;AB=0.596899;ABP=13.531;RUN=1;RPP=6.31642;RPPR=3.28173;RPL=49.0;RPR=62.0;EPP=6.31642;EPPR=7.35324;DPRA=0.0;ODDS=6.7038;GTI=0;TYPE=del;CIGAR=1M3D37M;NUMALT=2;MEANALT=8.0;LEN=3;MQM=60.7207;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.336;FS=4.363;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=1.401;QD=19.15;RPA=13,12;RU=CAG;ReadPosRankSum=-0.834;SOR=1.264;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.62265:45:0:0:34:1174:-99.0831,-3.13648,0.0:36:88:41:0,39:1759,269,154:1:.:1:.:.:.:0.000972382	0/1:129.501:183:32:1225:77:2749:-216.961,0.0,-90.3569:86:69:125:34,96:3951,0,1193:.:1:1:.:.:.:-0.033653
chr9	2039776	.	ACAGCAG	A	3082.6	REJECT	NS=2;DP=173;DPB=288.439;AC=2;AN=2;AF=0.0;RO=32;AO=14;PRO=95.8333;PAO=80.3333;QR=1225;QA=464;PQR=3523.5;PQA=2936.0;SRF=15;SRR=17;SAF=9;SAR=5;SRP=3.28173;SAP=5.49198;AB=0.0852713;ABP=195.733;RUN=1;RPP=5.49198;RPPR=3.28173;RPL=9.0;RPR=5.0;EPP=3.63072;EPPR=7.35324;DPRA=0.0;ODDS=6.7038;GTI=0;TYPE=del;CIGAR=1M6D34M;NUMALT=2;MEANALT=8.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.41;QD=21.79;SOR=0.976	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.62265:45:0:0:3:118:-99.0831,-91.986,-121.773:5:11:41:0,7:1759,1432,1550:1:.:.:.:.:.:0.000972382	./1:160.002:129:32:1225:11:346:-216.961,-207.505,-422.536:11:9:120:.:.:.:.:1:.:.:.:-0.033653
chr9	2073514	.	A	T	2998.88	REJECT	NS=2;DP=214;DPB=247.0;AC=2;AN=4;AF=0.5;RO=134;AO=113;PRO=0.0;PAO=0.0;QR=5046;QA=4311;PQR=0.0;PQA=0.0;SRF=82;SRR=52;SAF=71;SAR=42;SRP=17.5948;SAP=19.1714;AB=0.45749;ABP=6.8873;RUN=1;RPP=99.881;RPPR=96.6105;RPL=21.0;RPR=92.0;EPP=7.33403;EPPR=24.012;DPRA=0.0;ODDS=183.326;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.992537;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.268;Dels=0.0;FS=0.757;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2695;QD=16.155;ReadPosRankSum=0.193;SOR=0.803;ClippingRankSum=0.262	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6905:64:35:1322:30:1138:-84.8865,0.0,-101.443:30:46:64:34,30:1068,0,1191:1:.:1:.:.:.:0.000972382	0/1:119.6905:182:99:3724:83:3173:-236.185,0.0,-285.762:83:46:182:99,83:2996,0,3601:.:1:1:.:.:.:-0.033653
chr9	2086804	.	G	A	2875.13	REJECT	NS=2;DP=184;DPB=211.0;AC=2;AN=4;AF=0.5;RO=100;AO=109;PRO=0.0;PAO=0.0;QR=3789;QA=4172;PQR=0.0;PQA=0.0;SRF=85;SRR=15;SAF=89;SAR=20;SRP=109.412;SAP=97.8578;AB=0.516588;ABP=3.51458;RUN=1;RPP=47.0175;RPPR=61.7269;RPL=31.0;RPR=78.0;EPP=13.5489;EPPR=28.1125;DPRA=0.0;ODDS=123.464;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.088;Dels=0.0;FS=3.437;HaplotypeScore=3.8904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9645;QD=19.4;ReadPosRankSum=1.27;SOR=0.809;ClippingRankSum=0.955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:53:21:812:32:1234:-96.806,0.0,-58.7788:32:60:53:21,32:1154,0,753:1:.:1:.:.:.:0.000972382	0/1:129.501:158:79:2977:77:2938:-222.092,0.0,-225.623:77:49:156:79,77:2803,0,2874:.:1:1:.:.:.:-0.033653
chr9	2096706	.	A	T	776.518	REJECT	NS=2;DP=440;DPB=440.0;AC=1;AN=4;AF=0.25;RO=385;AO=55;PRO=0.0;PAO=0.0;QR=14807;QA=2095;PQR=0.0;PQA=0.0;SRF=190;SRR=195;SAF=26;SAR=29;SRP=3.1513;SAP=3.36563;AB=0.302752;ABP=39.8456;RUN=1;RPP=4.94488;RPPR=4.27934;RPL=31.0;RPR=24.0;EPP=3.04978;EPPR=15.4695;DPRA=0.0;ODDS=31.7006;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98961;technology.ILLUMINA=1.0;BaseQRankSum=-1.242;FS=0.778;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.065;QD=9.17;ReadPosRankSum=1.466;SOR=0.789;ClippingRankSum=1.31	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:76:2928:33:1243:-82.3328,0.0,-234.005:32:30:108:75,32:1019,0,2927:1:.:1:.:.:.:0.000972382	0/0:131.779:331:309:11879:22:852:0.0,-13.0075,-991.795:22:7:331:.:.:.:.:0:.:.:.:-0.033653
chr9	2096774	.	G	A	1488.025	REJECT	NS=2;DP=280;DPB=327.0;AC=2;AN=4;AF=0.5;RO=257;AO=70;PRO=0.0;PAO=0.0;QR=9941;QA=2729;PQR=0.0;PQA=0.0;SRF=98;SRR=159;SAF=33;SAR=37;SRP=34.4502;SAP=3.50664;AB=0.214067;ABP=235.225;RUN=1;RPP=9.09042;RPPR=40.9392;RPL=42.0;RPR=28.0;EPP=7.47733;EPPR=4.03267;DPRA=0.0;ODDS=60.7403;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988327;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7205;Dels=0.0;FS=3.9615;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6265;QD=9.235;ReadPosRankSum=-0.424;SOR=0.419;ClippingRankSum=1.135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.273:89:47:1774:44:1712:-129.451,0.0,-135.034:43:48:89:45,43:1499,0,1593:1:.:1:.:.:.:0.000972382	0/1:124.273:235:210:8167:26:1017:-27.5389,0.0,-670.709:26:11:235:208,26:440,0,8365:.:1:1:.:.:.:-0.033653
chr9	2101545	.	T	A	4917.825000000001	REJECT	NS=2;DP=319;DPB=365.0;AC=2;AN=4;AF=0.5;RO=184;AO=181;PRO=0.0;PAO=0.0;QR=7095;QA=6862;PQR=0.0;PQA=0.0;SRF=123;SRR=61;SAF=116;SAR=65;SRP=48.3752;SAP=34.2147;AB=0.49589;ABP=3.06384;RUN=1;RPP=53.698;RPPR=40.0197;RPL=58.0;RPR=123.0;EPP=19.4343;EPPR=16.6528;DPRA=0.0;ODDS=266.612;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983425;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6405;Dels=0.0;FS=3.0495;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5165;QD=17.815;ReadPosRankSum=0.74;SOR=0.7195;ClippingRankSum=1.249	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:42:1590:47:1761:-134.437,0.0,-119.022:46:52:88:42,46:1631,0,1383:1:.:1:.:.:.:0.000972382	0/1:129.501:274:142:5505:134:5101:-384.079,0.0,-420.416:133:48:274:141,132:4838,0,5301:.:1:1:.:.:.:-0.033653
chr9	2157934	.	C	T	6791.455	REJECT	NS=2;DP=316;DPB=360.0;AC=3;AN=4;AF=0.75;RO=113;AO=246;PRO=0.0;PAO=0.0;QR=4308;QA=9449;PQR=0.0;PQA=0.0;SRF=32;SRR=81;SAF=83;SAR=163;SRP=49.1493;SAP=59.5039;AB=0.583942;ABP=19.7798;RUN=1;RPP=51.3476;RPPR=3.95191;RPL=160.0;RPR=86.0;EPP=20.0996;EPPR=11.4848;DPRA=0.0;ODDS=54.6874;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995935;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.331;Dels=0.0;FS=1.848;HaplotypeScore=3.8991;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.881;QD=26.005;ReadPosRankSum=-0.218;SOR=1.0765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.967:85:0:0:86:3347:-301.331,-23.3245,0.0:85:100:85:0,84:3558,253,0:1:.:1:.:.:.:0.000972382	0/1:118.967:273:113:4308:160:6102:-474.969,0.0,-313.56:160:59:272:112,160:6029,0,3919:.:1:1:.:.:.:-0.033653
chr9	4502848	.	C	G	5931.46	REJECT	NS=2;DP=361;DPB=418.0;AC=2;AN=4;AF=0.5;RO=202;AO=216;PRO=0.0;PAO=0.0;QR=7763;QA=8276;PQR=0.0;PQA=0.0;SRF=114;SRR=88;SAF=120;SAR=96;SRP=10.2772;SAP=8.80089;AB=0.516746;ABP=4.0285;RUN=1;RPP=12.0581;RPPR=3.0103;RPL=93.0;RPR=123.0;EPP=4.01561;EPPR=3.1823;DPRA=0.0;ODDS=332.088;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.896;Dels=0.0;FS=2.487;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.496;QD=19.265;ReadPosRankSum=0.6505;SOR=0.768;ClippingRankSum=-0.708	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:51:1952:62:2391:-184.566,0.0,-145.061:61:55:112:50,61:2257,0,1805:1:.:1:.:.:.:0.000972382	0/1:129.501:305:151:5811:154:5885:-446.729,0.0,-440.072:154:50:305:151,154:5655,0,5588:.:1:1:.:.:.:-0.033653
chr9	5064525	.	C	CA	183.355	REJECT	NS=2;DP=115;DPB=201.0;AC=2;AN=3;AF=0.25;RO=59;AO=14;PRO=43.9833;PAO=39.9833;QR=2081;QA=385;PQR=1509.42;PQA=1350.42;SRF=42;SRR=17;SAF=9;SAR=5;SRP=26.0132;SAP=5.49198;AB=0.121739;ABP=145.931;RUN=1;RPP=8.59409;RPPR=71.062;RPL=4.0;RPR=10.0;EPP=5.49198;EPPR=13.6468;DPRA=0.0;ODDS=9.4066;GTI=0;TYPE=ins;CIGAR=1M1I31M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40.8522:28:16:558:5:143:-5.83085,0.0,-59.0027:5:20:25:.:.:1:.:.:.:-0.00172627	./1:54.7366:87:43:1523:9:242:-21.4408,-9.06892,-131.784:9:13:72:.:.:1:.:.:.:-0.033653
chr9	5064525	.	CA	C	183.355	PASS	SOMATIC;NS=2;DP=115;DPB=201.0;AC=2;AN=3;AF=0.25;RO=59;AO=14;PRO=43.9833;PAO=37.15;QR=2081;QA=457;PQR=1509.42;PQA=1246.75;SRF=42;SRR=17;SAF=11;SAR=3;SRP=26.0132;SAP=12.937;AB=0.121739;ABP=145.931;RUN=1;RPP=18.5208;RPPR=71.062;RPL=2.0;RPR=12.0;EPP=5.49198;EPPR=13.6468;DPRA=0.0;ODDS=9.4066;GTI=0;TYPE=del;CIGAR=1M1D30M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.7143;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.387;FS=3.614;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=0.135;QD=0.66;RPA=15,14;RU=A;ReadPosRankSum=-1.039;SOR=0.245;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.8522:28:16:558:1:31:-5.83085,-9.81679,-79.3361:1:4:25:.:.:.:.:1:.:.:.:-0.00172627	0/1:76.8683:100:43:1523:13:426:-21.4408,0.0,-151.369:17:20:84:75,21:113,0,1177:.:1:1:.:.:.:-0.033653
chr9	5064525	.	CAA	C	183.355	REJECT	NS=2;DP=115;DPB=201.0;AC=2;AN=2;AF=0.0;RO=59;AO=5;PRO=43.9833;PAO=36.9;QR=2081;QA=126;PQR=1509.42;PQA=1261.5;SRF=42;SRR=17;SAF=2;SAR=3;SRP=26.0132;SAP=3.44459;AB=0.0574713;ABP=150.995;RUN=1;RPP=3.44459;RPPR=71.062;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=13.6468;DPRA=0.0;ODDS=9.4066;GTI=0;TYPE=del;CIGAR=1M2D29M;NUMALT=4;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.8522:28:16:558:0:0:-5.83085,-12.339,-82.1293:0:0:25:.:.:1:.:.:.:-0.00172627	./1:54.7366:87:43:1523:5:126:-21.4408,-23.8371,-187.781:5:7:72:.:.:1:.:.:.:-0.033653
chr9	5064541	.	G	A	183.355	REJECT	NS=2;DP=115;DPB=201.0;AC=2;AN=2;AF=0.0;RO=59;AO=5;PRO=43.9833;PAO=28.9833;QR=2081;QA=70;PQR=1509.42;PQA=798.917;SRF=42;SRR=17;SAF=5;SAR=0;SRP=26.0132;SAP=13.8677;AB=0.0434783;ABP=211.188;RUN=1;RPP=6.91895;RPPR=71.062;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=13.6468;DPRA=0.0;ODDS=9.4066;GTI=0;TYPE=snp;CIGAR=16M1X15M;NUMALT=4;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.8522:28:16:558:3:42:-5.83085,-27.8306,-369.44:3:12:25:.:.:1:.:.:.:-0.00172627	./1:54.7366:87:43:1523:2:28:-21.4408,-69.9961,-753.252:2:3:72:.:.:1:.:.:.:-0.033653
chr9	5068174	.	C	A	180.73	REJECT	NS=2;DP=169;DPB=236.926;AC=2;AN=2;AF=0.0;RO=63;AO=8;PRO=38.7167;PAO=25.2167;QR=2216;QA=182;PQR=1279.73;PQA=850.9;SRF=42;SRR=21;SAF=2;SAR=6;SRP=18.2106;SAP=7.35324;AB=0.0473373;ABP=303.791;RUN=1;RPP=7.35324;RPPR=45.2334;RPL=2.0;RPR=6.0;EPP=3.0103;EPPR=3.872;DPRA=0.0;ODDS=2.97827;GTI=0;TYPE=snp;CIGAR=1X26M;NUMALT=4;MEANALT=23.0;LEN=1;MQM=58.75;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:12.9263:41:11:362:3:42:-4.40451,-10.8861,-101.373:3:12:25:.:.:1:.:.:.:-0.00172627	./1:112.895:128:52:1854:5:140:-21.0892,-55.8793,-513.958:5:6:90:.:.:1:.:.:.:-0.033653
chr9	5068174	.	C	CA	180.73	REJECT	NS=2;DP=169;DPB=236.926;AC=2;AN=4;AF=0.5;RO=63;AO=18;PRO=38.7167;PAO=35.7167;QR=2216;QA=536;PQR=1279.73;PQA=1189.73;SRF=42;SRR=21;SAF=13;SAR=5;SRP=18.2106;SAP=10.7311;AB=0.106509;ABP=230.295;RUN=1;RPP=20.3821;RPPR=45.2334;RPL=3.0;RPR=15.0;EPP=7.35324;EPPR=3.872;DPRA=0.0;ODDS=2.97827;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=4;MEANALT=23.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:12.9263:41:11:362:3:91:-4.40451,0.0,-28.8426:3:12:25:.:.:1:.:.:.:-0.00172627	0/1:112.895:128:52:1854:15:445:-21.0892,0.0,-156.042:15:17:90:.:.:1:.:.:.:-0.033653
chr9	5068174	.	CA	C	180.73	REJECT	NS=2;DP=169;DPB=236.926;AC=2;AN=2;AF=0.0;RO=63;AO=16;PRO=38.7167;PAO=32.05;QR=2216;QA=474;PQR=1279.73;PQA=1061.4;SRF=42;SRR=21;SAF=6;SAR=10;SRP=18.2106;SAP=5.18177;AB=0.0946746;ABP=244.172;RUN=1;RPP=3.0103;RPPR=45.2334;RPL=8.0;RPR=8.0;EPP=5.18177;EPPR=3.872;DPRA=0.0;ODDS=2.97827;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=4;MEANALT=23.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:12.9263:41:11:362:5:140:-4.40451,-1.00687,-82.5335:5:20:25:.:.:1:.:.:.:-0.00172627	./1:112.895:128:52:1854:11:334:-21.0892,-12.4103,-235.059:11:12:90:.:.:1:.:.:.:-0.033653
chr9	5068190	.	C	A	180.73	REJECT	NS=2;DP=169;DPB=236.926;AC=2;AN=2;AF=0.0;RO=63;AO=10;PRO=38.7167;PAO=25.3;QR=2216;QA=156;PQR=1279.73;PQA=706.233;SRF=42;SRR=21;SAF=10;SAR=0;SRP=18.2106;SAP=24.725;AB=0.0591716;ABP=288.27;RUN=1;RPP=3.87889;RPPR=45.2334;RPL=4.0;RPR=6.0;EPP=3.87889;EPPR=3.872;DPRA=0.0;ODDS=2.97827;GTI=0;TYPE=snp;CIGAR=16M1X10M;NUMALT=4;MEANALT=23.0;LEN=1;MQM=58.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:12.9263:41:11:362:3:42:-4.40451,-22.3227,-245.004:3:12:25:.:.:1:.:.:.:-0.00172627	./1:112.895:128:52:1854:7:114:-21.0892,-69.0741,-700.58:7:8:90:.:.:1:.:.:.:-0.033653
chr9	5070905	.	C	T	2548.6	PASS	SOMATIC;NS=2;DP=461;DPB=461.0;AC=1;AN=3;AF=0.25;RO=358;AO=103;PRO=0.0;PAO=0.0;QR=13682;QA=3919;PQR=0.0;PQA=0.0;SRF=163;SRR=195;SAF=54;SAR=49;SRP=9.22144;SAP=3.53736;AB=0.304734;ABP=114.95;RUN=1;RPP=9.10307;RPPR=4.97554;RPL=43.0;RPR=60.0;EPP=5.56125;EPPR=3.10735;DPRA=2.74797;ODDS=77.7305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994413;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.976;Dels=0.0;FS=7.094;HaplotypeScore=5.8375;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.579;QD=9.83;ReadPosRankSum=-0.406;SOR=0.623	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:118:123:4705:0:0:0.0,-33.332,-423.43:0:0:118:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:129.501:338:235:8977:103:3919:-260.963,0.0,-715.895:103:30:338:226,99:38.0:0.306:2:3352,0,9021:.:1:1:.:.:1:-0.033653
chr9	5071049	.	G	A	3475.53	PASS	SOMATIC;NS=2;DP=507;DPB=507.0;AC=1;AN=3;AF=0.25;RO=374;AO=133;PRO=0.0;PAO=0.0;QR=14268;QA=5069;PQR=0.0;PQA=0.0;SRF=210;SRR=164;SAF=79;SAR=54;SRP=15.296;SAP=13.2146;AB=0.354667;ABP=71.8083;RUN=1;RPP=6.68384;RPPR=5.82044;RPL=59.0;RPR=74.0;EPP=3.41847;EPPR=4.14829;DPRA=2.84091;ODDS=83.2821;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991979;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.82;Dels=0.0;FS=2.349;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.069;QD=11.99;ReadPosRankSum=0.433;SOR=0.856	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.966:129:132:4972:0:0:0.0,-35.743,-447.418:0:0:129:127,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:120.983:374:242:9296:133:5069:-354.335,0.0,-734.546:133:35:374:232,126:38.0:0.349:2:4514,0,9257:.:1:1:.:.:1:-0.033653
chr9	5072846	.	G	A	3368.96	PASS	SOMATIC;NS=2;DP=470;DPB=470.0;AC=1;AN=3;AF=0.25;RO=341;AO=129;PRO=0.0;PAO=0.0;QR=13059;QA=4889;PQR=0.0;PQA=0.0;SRF=170;SRR=171;SAF=69;SAR=60;SRP=3.01667;SAP=4.37378;AB=0.365439;ABP=58.5274;RUN=1;RPP=6.79775;RPPR=3.5261;RPL=72.0;RPR=57.0;EPP=17.167;EPPR=5.30913;DPRA=3.01709;ODDS=73.9909;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994135;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.243;Dels=0.0;FS=1.321;HaplotypeScore=7.7978;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.973;QD=12.4;ReadPosRankSum=0.816;SOR=0.801	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.232:114:117:4487:0:0:0.0,-31.7079,-403.831:0:0:114:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:122.116:353:224:8572:129:4889:-344.162,0.0,-675.376:129:37:353:215,128:37.0:0.381:2:4405,0,8498:.:1:1:.:.:1:-0.033653
chr9	5079498	.	G	GT	206.977	REJECT	NS=2;DP=385;DPB=447.778;AC=2;AN=3;AF=0.25;RO=285;AO=33;PRO=57.6667;PAO=40.6667;QR=10545;QA=1161;PQR=1998.83;PQA=1391.83;SRF=120;SRR=165;SAF=19;SAR=14;SRP=18.4392;SAP=4.65535;AB=0.0947368;ABP=409.579;RUN=1;RPP=3.0761;RPPR=3.62746;RPL=16.0;RPR=17.0;EPP=3.60252;EPPR=17.0982;DPRA=0.0;ODDS=7.78822;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.303;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989474;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:31.7787:100:77:2793:6:226:0.0,-2.68916,-237.922:6:7:89:.:.:1:.:.:.:-0.00172627	0/1:136.568:285:208:7752:27:935:-25.1112,0.0,-686.21:27:11:257:.:.:1:.:.:.:-0.033653
chr9	5079498	.	GT	G	206.977	REJECT	NS=2;DP=385;DPB=447.778;AC=2;AN=2;AF=0.0;RO=285;AO=28;PRO=57.6667;PAO=35.6667;QR=10545;QA=998;PQR=1998.83;PQA=1191.33;SRF=120;SRR=165;SAF=13;SAR=15;SRP=18.4392;SAP=3.32051;AB=0.077193;ABP=445.541;RUN=1;RPP=4.25114;RPPR=3.62746;RPL=16.0;RPR=12.0;EPP=3.32051;EPPR=17.0982;DPRA=0.0;ODDS=7.78822;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.964286;PAIREDR=0.989474;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:31.7787:100:77:2793:6:213:0.0,-2.33394,-255.117:6:7:89:.:.:1:.:.:.:-0.00172627	./1:136.568:285:208:7752:22:785:-25.1112,-23.2079,-739.042:22:9:257:.:.:1:.:.:.:-0.033653
chr9	5079828	.	A	T	234.747	REJECT	NS=2;DP=309;DPB=358.647;AC=2;AN=2;AF=0.0;RO=229;AO=11;PRO=34.4167;PAO=19.0833;QR=8576;QA=379;PQR=1197.17;PQA=633.5;SRF=158;SRR=71;SAF=10;SAR=1;SRP=74.7827;SAP=19.0002;AB=0.0355987;ABP=581.852;RUN=1;RPP=26.8965;RPPR=85.0237;RPL=0.0;RPR=11.0;EPP=19.0002;EPPR=23.9569;DPRA=0.0;ODDS=25.2507;GTI=0;TYPE=snp;CIGAR=1X16M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995633;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:128.75:81:57:2085:6:195:-16.3236,-22.8888,-272.651:6:8:75:.:.:1:.:.:.:-0.00172627	./1:109.409:228:172:6491:5:184:-14.1808,-62.4039,-858.608:5:2:217:.:.:1:.:.:.:-0.033653
chr9	5079828	.	A	AT	234.747	REJECT	NS=2;DP=309;DPB=358.647;AC=2;AN=3;AF=0.25;RO=229;AO=27;PRO=34.4167;PAO=31.4167;QR=8576;QA=968;PQR=1197.17;PQA=1086.17;SRF=158;SRR=71;SAF=15;SAR=12;SRP=74.7827;SAP=3.73412;AB=0.0873786;ABP=459.968;RUN=1;RPP=9.52472;RPPR=85.0237;RPL=9.0;RPR=18.0;EPP=5.02092;EPPR=23.9569;DPRA=0.0;ODDS=25.2507;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995633;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.818;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.818;QD=1.44;ReadPosRankSum=-0.007;SOR=0.729;ClippingRankSum=0.263	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.875:76:57:2085:11:386:-16.3236,0.0,-169.285:12:17:73:58,14:155,0,1309:1:.:1:.:.:.:-0.00172627	./1:109.409:228:172:6491:16:582:-14.1808,-13.5712,-555.764:16:7:217:.:.:.:.:1:.:.:.:-0.033653
chr9	5079828	.	AT	A	234.747	PASS	SOMATIC;NS=2;DP=309;DPB=358.647;AC=2;AN=3;AF=0.25;RO=229;AO=25;PRO=34.4167;PAO=27.0833;QR=8576;QA=842;PQR=1197.17;PQA=920.167;SRF=158;SRR=71;SAF=13;SAR=12;SRP=74.7827;SAP=3.09716;AB=0.0809061;ABP=474.417;RUN=1;RPP=10.0459;RPPR=85.0237;RPL=8.0;RPR=17.0;EPP=5.18177;EPPR=23.9569;DPRA=0.0;ODDS=25.2507;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=62.4;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995633;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:128.75:81:57:2085:1:34:-16.3236,-29.525,-207.999:1:1:75:.:.:1:.:.:.:-0.00172627	0/1:109.409:228:172:6491:24:808:-14.1808,0.0,-593.319:24:11:217:.:.:1:.:.:.:-0.033653
chr9	5350821	.	C	T	3230.09	REJECT	NS=2;DP=209;DPB=242.0;AC=2;AN=4;AF=0.5;RO=125;AO=117;PRO=0.0;PAO=0.0;QR=4733;QA=4483;PQR=0.0;PQA=0.0;SRF=89;SRR=36;SAF=78;SAR=39;SRP=51.8076;SAP=31.2394;AB=0.483471;ABP=3.58457;RUN=1;RPP=37.327;RPPR=3.44459;RPL=37.0;RPR=80.0;EPP=3.17734;EPPR=9.28151;DPRA=0.0;ODDS=191.01;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.108;Dels=0.0;FS=3.5105;HaplotypeScore=6.798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2855;QD=18.71;ReadPosRankSum=0.376;SOR=0.688;ClippingRankSum=0.506	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0635:65:35:1308:31:1145:-85.2442,0.0,-99.9249:31:47:65:34,31:1278,0,2140:1:.:1:.:.:.:-0.00172627	0/1:119.0635:176:90:3425:86:3338:-252.643,0.0,-260.455:86:49:176:90,86:3231,0,3289:.:1:1:.:.:.:-0.033653
chr9	5350828	.	C	G	3681.105	REJECT	NS=2;DP=229;DPB=266.0;AC=2;AN=4;AF=0.5;RO=133;AO=133;PRO=0.0;PAO=0.0;QR=5102;QA=5094;PQR=0.0;PQA=0.0;SRF=90;SRR=43;SAF=87;SAR=46;SRP=39.0763;SAP=30.4558;AB=0.5;ABP=3.0103;RUN=1;RPP=36.0722;RPPR=4.33278;RPL=44.0;RPR=89.0;EPP=3.81032;EPPR=5.76954;DPRA=0.0;ODDS=221.899;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2615;Dels=0.0;FS=3.4385;HaplotypeScore=5.8315;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.67;QD=18.275;ReadPosRankSum=0.1445;SOR=0.808;ClippingRankSum=1.296	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7795:72:38:1437:35:1322:-99.2598,0.0,-109.615:35:48:72:37,35:1310,0,2209:1:.:1:.:.:.:-0.00172627	0/1:118.7795:193:95:3665:98:3772:-287.061,0.0,-277.429:98:51:193:95,98:3647,0,3524:.:1:1:.:.:.:-0.033653
chr9	5350875	.	A	C	4971.105	REJECT	NS=2;DP=279;DPB=326.0;AC=2;AN=4;AF=0.5;RO=152;AO=173;PRO=0.0;PAO=0.0;QR=5809;QA=6732;PQR=0.0;PQA=0.0;SRF=85;SRR=67;SAF=101;SAR=72;SRP=7.63896;SAP=13.5664;AB=0.530675;ABP=5.67468;RUN=1;RPP=5.13156;RPPR=3.9246;RPL=80.0;RPR=93.0;EPP=3.62534;EPPR=9.92473;DPRA=0.0;ODDS=307.372;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99422;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8635;Dels=0.0;FS=2.016;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.403;QD=18.98;ReadPosRankSum=1.0065;SOR=0.943;ClippingRankSum=-0.663	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.238:92:47:1809:46:1776:-134.663,0.0,-137.634:45:49:92:46,45:1601,0,1676:1:.:1:.:.:.:-0.00172627	0/1:120.238:232:105:4000:127:4956:-382.962,0.0,-296.968:127:55:232:105,127:4867,0,3785:.:1:1:.:.:.:-0.033653
chr9	5352625	.	C	G	6313.610000000001	REJECT	NS=2;DP=384;DPB=443.0;AC=2;AN=4;AF=0.5;RO=218;AO=225;PRO=0.0;PAO=0.0;QR=8367;QA=8522;PQR=0.0;PQA=0.0;SRF=97;SRR=121;SAF=108;SAR=117;SRP=8.74777;SAP=3.79203;AB=0.507901;ABP=3.25049;RUN=1;RPP=7.26639;RPPR=6.23763;RPL=102.0;RPR=123.0;EPP=3.79203;EPPR=18.9477;DPRA=0.0;ODDS=329.9;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977778;PAIREDR=0.995413;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.78;Dels=0.0;FS=2.129;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.011;QD=16.575;ReadPosRankSum=-0.99;SOR=0.6285;ClippingRankSum=-0.277	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:62:2389:52:1937:-143.446,0.0,-184.133:50:45:112:61,49:1574,0,2150:1:.:1:.:.:.:-0.00172627	0/1:129.501:327:156:5978:173:6585:-503.204,0.0,-448.598:171:52:327:156,170:6256,0,5682:.:1:1:.:.:.:-0.033653
chr9	5557672	.	T	C	15798.65	REJECT	NS=2;DP=416;DPB=466.0;AC=4;AN=4;AF=1.0;RO=0;AO=466;PRO=0.0;PAO=0.0;QR=0;QA=17787;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=226;SAR=240;SRP=0.0;SAP=3.92362;AB=0.0;ABP=0.0;RUN=1;RPP=4.87422;RPPR=0.0;RPL=223.0;RPR=243.0;EPP=39.0959;EPPR=0.0;DPRA=0.0;ODDS=66.7056;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995708;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.6812;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.63;SOR=0.897	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3772:-339.541,-27.0948,0.0:99:100:99:0,99:3868,297,0:1:.:1:.:.:.:-0.00172627	1/1:129.501:366:0:0:366:14015:-1260.5,-99.1075,0.0:366:100:366:0,366:15707,1090,0:.:1:1:.:.:.:-0.033653
chr9	8319806	.	C	T	781.3205	REJECT	NS=2;DP=213;DPB=239.0;AC=2;AN=4;AF=0.5;RO=194;AO=45;PRO=0.0;PAO=0.0;QR=7417;QA=1742;PQR=0.0;PQA=0.0;SRF=119;SRR=75;SAF=30;SAR=15;SRP=24.6803;SAP=13.8677;AB=0.188285;ABP=204.721;RUN=1;RPP=62.1226;RPPR=78.2731;RPL=5.0;RPR=40.0;EPP=6.91895;EPPR=4.62211;DPRA=0.0;ODDS=55.9602;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994845;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.346;Dels=0.0;FS=2.1365;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.309;QD=8.675;ReadPosRankSum=0.0005;SOR=1.018;ClippingRankSum=0.789	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.924:51:29:1113:22:850:-62.7478,0.0,-86.455:22:43:51:29,22:801,0,1098:1:.:1:.:.:.:-0.00172627	0/1:121.924:188:165:6304:23:892:-29.3202,0.0,-516.228:23:12:188:165,23:442,0,6490:.:1:1:.:.:.:-0.033653
chr9	8331574	.	A	AAACTTACCATTCCTGAACTGT	226.634	REJECT	NS=2;DP=265;DPB=454.2;AC=2;AN=3;AF=0.25;RO=219;AO=19;PRO=3.33333;PAO=4.83333;QR=8340;QA=620;PQR=96.6667;PQA=143.167;SRF=135;SRR=84;SAF=11;SAR=8;SRP=28.8003;SAP=4.03889;AB=0.0716981;ABP=425.251;RUN=1;RPP=3.12459;RPPR=21.3439;RPL=10.0;RPR=9.0;EPP=4.03889;EPPR=16.5845;DPRA=0.0;ODDS=17.8063;GTI=0;TYPE=ins;CIGAR=1M21I4M;NUMALT=2;MEANALT=4.0;LEN=21;MQM=60.0;MQMR=59.9635;PAIRED=1.0;PAIREDR=0.990868;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=8331574;HOMLEN=8;HOMSEQ=AACTTACC;SVLEN=21;SVTYPE=INS;BaseQRankSum=-1.656;FS=4.222;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.263;QD=22.73;ReadPosRankSum=-4.266;SOR=1.228;ClippingRankSum=0.494	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:88.1659:72:47:1803:7:191:-9.05071,0.0,-147.286:41:47:80:35,48:2106,0,8628:1:.:1:1:.:.:-0.00172627	./1:136.776:209:172:6537:12:429:-21.6833,-24.2976,-561.514:12:6:206:.:.:.:.:1:.:.:.:-0.033653
chr9	8331574	.	A	AAACTTACCATTCTTGAACTGT	226.634	PASS	SOMATIC;NS=2;DP=265;DPB=454.2;AC=2;AN=3;AF=0.25;RO=219;AO=22;PRO=3.33333;PAO=4.83333;QR=8340;QA=729;PQR=96.6667;PQA=143.167;SRF=135;SRR=84;SAF=16;SAR=6;SRP=28.8003;SAP=12.8806;AB=0.105263;ABP=285.873;RUN=1;RPP=4.58955;RPPR=21.3439;RPL=13.0;RPR=9.0;EPP=17.2236;EPPR=16.5845;DPRA=0.0;ODDS=17.8063;GTI=0;TYPE=ins;CIGAR=1M21I4M;NUMALT=2;MEANALT=5.0;LEN=21;MQM=60.0;MQMR=59.9635;PAIRED=1.0;PAIREDR=0.990868;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=8331574;HOMLEN=8;HOMSEQ=AACTTACC;SVLEN=21;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:.:0:0:54:77.3318:56:47:1803:0:0:-9.05071,-15.3162,-164.472:.:.:1:.:.:.:-0.00172627	0/1:103,174:98:37:241:136.776:209:172:6537:22:729:-21.6833,0.0,-534.518:.:.:1:1:.:.:-0.033653
chr9	8341280	.	G	GA	113.078	REJECT	NS=2;DP=124;DPB=166.154;AC=2;AN=2;AF=0.0;RO=85;AO=5;PRO=54.1667;PAO=21.1667;QR=3132;QA=159;PQR=1781.5;PQA=706.5;SRF=9;SRR=76;SAF=0;SAR=5;SRP=117.69;SAP=13.8677;AB=0.0403226;ABP=230.595;RUN=1;RPP=6.91895;RPPR=37.9838;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=16.5245;DPRA=0.0;ODDS=4.0855;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.8155:37:26:966:2:46:-3.47219,-7.29317,-118.642:2:6:33:.:.:1:.:.:.:-0.00172627	./1:112.561:87:59:2166:3:113:-15.336,-26.628,-264.281:3:4:73:.:.:1:.:.:.:-0.033653
chr9	8341280	.	GA	G	113.078	REJECT	NS=2;DP=124;DPB=166.154;AC=2;AN=4;AF=0.5;RO=85;AO=16;PRO=54.1667;PAO=18.6667;QR=3132;QA=560;PQR=1781.5;PQA=642.0;SRF=9;SRR=76;SAF=2;SAR=14;SRP=117.69;SAP=22.5536;AB=0.129032;ABP=151.231;RUN=1;RPP=11.6962;RPPR=37.9838;RPL=12.0;RPR=4.0;EPP=5.18177;EPPR=16.5245;DPRA=0.0;ODDS=4.0855;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:17.8155:37:26:966:5:174:-3.47219,0.0,-117.281:5:15:33:.:.:1:.:.:.:-0.00172627	0/1:112.561:87:59:2166:11:386:-15.336,0.0,-267.336:11:15:73:.:.:1:.:.:.:-0.033653
chr9	8389364	.	C	G	2960.32	PASS	SOMATIC;NS=2;DP=382;DPB=382.0;AC=1;AN=3;AF=0.25;RO=269;AO=113;PRO=0.0;PAO=0.0;QR=10212;QA=4253;PQR=0.0;PQA=0.0;SRF=108;SRR=161;SAF=48;SAR=65;SRP=25.6856;SAP=8.56389;AB=0.389655;ABP=33.6805;RUN=1;RPP=13.1759;RPPR=4.37453;RPL=68.0;RPR=45.0;EPP=15.0207;EPPR=3.08295;DPRA=3.15217;ODDS=58.3805;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9823;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992565;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.393;Dels=0.0;FS=0.0;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.157;QD=13.29;ReadPosRankSum=-2.307;SOR=0.71	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.589:91:92:3489:0:0:0.0,-24.9283,-314.086:0:0:91:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:120.7945:290:177:6723:113:4253:-304.051,0.0,-526.2:113:39:290:171,107:38.0:0.381:2:3881,0,6617:.:1:1:.:.:1:-0.033653
chr9	8436703	.	C	G	5456.05	REJECT	NS=2;DP=225;DPB=265.0;AC=3;AN=4;AF=0.75;RO=64;AO=201;PRO=0.0;PAO=0.0;QR=2468;QA=7726;PQR=0.0;PQA=0.0;SRF=20;SRR=44;SAF=42;SAR=159;SRP=22.5536;SAP=150.897;AB=0.655914;ABP=42.2836;RUN=1;RPP=57.47;RPPR=33.5466;RPL=136.0;RPR=65.0;EPP=3.88537;EPPR=6.40323;DPRA=0.0;ODDS=50.1981;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.841;Dels=0.0;FS=4.1895;HaplotypeScore=5.8793;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.2;QD=25.575;ReadPosRankSum=2.129;SOR=1.982	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.382:78:0:0:79:2994:-269.519,-21.3748,0.0:78:100:78:0,78:3267,233,0:1:.:1:.:.:.:-0.00172627	0/1:125.382:186:64:2468:122:4732:-375.337,0.0,-171.624:122:66:186:64,122:4761,0,2178:.:1:1:.:.:.:-0.033653
chr9	8460277	.	T	C	4921.735000000001	REJECT	NS=2;DP=314;DPB=359.0;AC=2;AN=4;AF=0.5;RO=179;AO=180;PRO=0.0;PAO=0.0;QR=6846;QA=6755;PQR=0.0;PQA=0.0;SRF=93;SRR=86;SAF=105;SAR=75;SRP=3.60473;SAP=13.8677;AB=0.501393;ABP=3.01635;RUN=1;RPP=5.37479;RPPR=3.31358;RPL=97.0;RPR=83.0;EPP=3.0103;EPPR=6.5162;DPRA=0.0;ODDS=281.67;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.7821;PAIRED=0.994444;PAIREDR=0.988827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4685;Dels=0.0;FS=7.6265;HaplotypeScore=7.8075;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.9085;QD=17.6;ReadPosRankSum=-0.1005;SOR=1.1785;ClippingRankSum=1.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3305:86:43:1638:44:1635:-123.608,0.0,-123.917:44:51:86:41,44:1500,0,1450:1:.:1:.:.:.:-0.00172627	0/1:119.3305:270:136:5208:136:5120:-386.862,0.0,-394.238:135:50:270:134,135:4840,0,4962:.:1:1:.:.:.:-0.033653
chr9	8460591	.	A	G	4028.07	REJECT	NS=2;DP=247;DPB=275.0;AC=2;AN=4;AF=0.5;RO=130;AO=144;PRO=0.0;PAO=0.0;QR=4939;QA=5504;PQR=0.0;PQA=0.0;SRF=35;SRR=95;SAF=39;SAR=105;SRP=63.1434;SAP=68.6973;AB=0.523636;ABP=4.34477;RUN=1;RPP=57.2971;RPPR=27.1303;RPL=102.0;RPR=42.0;EPP=3.55317;EPPR=3.0103;DPRA=0.0;ODDS=166.581;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0455;Dels=0.0;FS=2.0135;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.884;QD=17.8;ReadPosRankSum=0.3455;SOR=0.906;ClippingRankSum=0.89	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.484:53:28:1076:26:995:-74.9922,0.0,-82.302:25:47:53:28,24:858,0,1053:1:.:1:.:.:.:-0.00172627	0/1:120.484:220:102:3863:118:4509:-346.03,0.0,-287.956:118:54:219:101,118:4349,0,3622:.:1:1:.:.:.:-0.033653
chr9	8470974	.	G	A	6844.015	REJECT	NS=2;DP=290;DPB=326.0;AC=3;AN=4;AF=0.75;RO=87;AO=239;PRO=0.0;PAO=0.0;QR=3397;QA=9143;PQR=0.0;PQA=0.0;SRF=49;SRR=38;SAF=152;SAR=87;SRP=6.03039;SAP=41.3972;AB=0.65748;ABP=57.7246;RUN=1;RPP=114.955;RPPR=44.9671;RPL=64.0;RPR=175.0;EPP=7.01708;EPPR=3.03526;DPRA=0.0;ODDS=45.9292;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1255;MQMR=60.0;PAIRED=0.995816;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.384;Dels=0.0;FS=2.314;HaplotypeScore=3.9315;MLEAC=1;MLEAF=0.75;MQ=60.065;MQRankSum=-0.432;QD=26.57;ReadPosRankSum=0.247;SOR=1.2395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.5565:70:0:0:72:2732:-246.027,-19.5208,0.0:70:100:70:0,69:2896,208,0:1:.:1:.:.:.:-0.00172627	0/1:119.5565:254:87:3397:167:6411:-507.891,0.0,-236.76:167:66:254:87,167:6393,0,3039:.:1:1:.:.:.:-0.033653
chr9	8484397	.	TA	T	992.606	REJECT	NS=2;DP=198;DPB=219.067;AC=2;AN=4;AF=0.5;RO=139;AO=47;PRO=28.0;PAO=22.0;QR=5241;QA=1677;PQR=1019.0;PQA=799.0;SRF=27;SRR=112;SAF=7;SAR=40;SRP=115.88;SAP=53.3238;AB=0.237374;ABP=121.63;RUN=1;RPP=10.8184;RPPR=57.3908;RPL=30.0;RPR=17.0;EPP=3.0565;EPPR=4.27569;DPRA=0.0;ODDS=70.8701;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;BaseQRankSum=-0.526;FS=2.712;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.864;QD=9.48;ReadPosRankSum=-1.987;SOR=0.368;ClippingRankSum=1.363	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.738:51:23:875:24:870:-74.994,0.0,-71.4927:26:52:50:25,28:625,0,519:1:.:1:.:.:.:-0.00172627	0/1:136.476:148:116:4366:23:807:-35.5689,0.0,-379.631:23:17:139:.:.:.:.:1:.:.:.:-0.033653
chr9	8497250	.	T	C	5528.85	REJECT	NS=2;DP=354;DPB=405.0;AC=2;AN=4;AF=0.5;RO=209;AO=196;PRO=0.0;PAO=0.0;QR=7833;QA=7484;PQR=0.0;PQA=0.0;SRF=95;SRR=114;SAF=105;SAR=91;SRP=6.76103;SAP=5.18177;AB=0.483951;ABP=3.91642;RUN=1;RPP=8.37251;RPPR=7.59221;RPL=87.0;RPR=109.0;EPP=7.44188;EPPR=5.34801;DPRA=0.0;ODDS=291.17;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994898;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.952;Dels=0.0;FS=5.153;HaplotypeScore=3.8985;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.879;QD=16.49;ReadPosRankSum=0.285;SOR=0.863;ClippingRankSum=-0.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:56:2051:45:1714:-126.93,0.0,-157.254:45:45:100:54,45:1498,0,1889:1:.:1:.:.:.:-0.00172627	0/1:129.501:303:153:5782:151:5770:-436.691,0.0,-437.75:150:50:303:153,150:5522,0,5517:.:1:1:.:.:.:-0.033653
chr9	21869079	.	T	G	1616.65	REJECT	NS=2;DP=369;DPB=411.0;AC=2;AN=4;AF=0.5;RO=321;AO=90;PRO=0.0;PAO=0.0;QR=12224;QA=3457;PQR=0.0;PQA=0.0;SRF=130;SRR=191;SAF=34;SAR=56;SRP=28.1818;SAP=14.688;AB=0.218978;ABP=284.937;RUN=1;RPP=5.42305;RPPR=22.0124;RPL=50.0;RPR=40.0;EPP=3.87889;EPPR=6.58883;DPRA=0.0;ODDS=175.211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.561;Dels=0.0;FS=3.9375;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.634;QD=9.715;ReadPosRankSum=2.5035;SOR=0.9055;ClippingRankSum=1.034	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4855:82:41:1553:42:1603:-121.821,0.0,-117.338:41:51:82:40,41:1334,0,1367:1:.:1:.:.:.:-0.00172627	0/1:117.4855:328:280:10671:48:1854:-77.9532,0.0,-870.961:48:15:328:280,48:1114,0,10913:.:1:1:.:.:.:-0.033653
chr9	21905632	.	GT	G	5824.55	REJECT	NS=2;DP=374;DPB=366.667;AC=2;AN=4;AF=0.5;RO=222;AO=208;PRO=9.0;PAO=6.0;QR=8510;QA=7873;PQR=312.0;PQA=209.0;SRF=114;SRR=108;SAF=97;SAR=111;SRP=3.36243;SAP=5.0565;AB=0.483721;ABP=4.00009;RUN=1;RPP=5.0565;RPPR=3.04943;RPL=111.0;RPR=97.0;EPP=23.2217;EPPR=27.4638;DPRA=0.0;ODDS=344.861;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0481;MQMR=60.0;PAIRED=0.995192;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;END=21905633;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=1.231;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.8315;QD=16.655;ReadPosRankSum=0.485;SOR=0.7405;ClippingRankSum=-0.206	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:127:74:2823:54:2061:-150.79,0.0,-219.365:56:44:127:52,57:1870,0,2484:1:.:1:1:.:.:-0.00172627	0/1:129.501:310:148:5687:154:5812:-440.173,0.0,-438.235:155:51:302:124,155:6145,0,5880:.:1:1:1:.:.:-0.033653
chr9	21909979	.	A	G	5782.425	REJECT	NS=2;DP=374;DPB=427.0;AC=2;AN=4;AF=0.5;RO=223;AO=204;PRO=0.0;PAO=0.0;QR=8512;QA=7870;PQR=0.0;PQA=0.0;SRF=119;SRR=104;SAF=90;SAR=114;SRP=5.20125;SAP=9.14152;AB=0.477752;ABP=4.84613;RUN=1;RPP=3.3935;RPPR=3.48744;RPL=99.0;RPR=105.0;EPP=8.16222;EPPR=26.3901;DPRA=0.0;ODDS=324.783;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990196;PAIREDR=0.995516;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.333;Dels=0.0;FS=7.5565;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.178;QD=17.12;ReadPosRankSum=0.648;SOR=0.8555;ClippingRankSum=-0.942	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:57:2135:49:1892:-141.575,0.0,-163.447:48:46:104:55,48:1722,0,1846:1:.:1:.:.:.:-0.00172627	0/1:129.501:321:166:6377:155:5978:-450.758,0.0,-486.615:155:48:321:166,155:5742,0,6152:.:1:1:.:.:.:-0.033653
chr9	21968199	.	C	G	11336.3	REJECT	NS=2;DP=342;DPB=387.0;AC=4;AN=4;AF=1.0;RO=4;AO=383;PRO=0.0;PAO=0.0;QR=36;QA=13104;PQR=0.0;PQA=0.0;SRF=4;SRR=0;SAF=167;SAR=216;SRP=11.6962;SAP=16.6231;AB=0.0;ABP=0.0;RUN=1;RPP=4.64883;RPPR=11.6962;RPL=183.0;RPR=200.0;EPP=38.3945;EPPR=11.6962;DPRA=0.0;ODDS=55.9331;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9922;MQMR=60.0;PAIRED=0.997389;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.851;Dels=0.0;FS=0.0;HaplotypeScore=30.7695;MLEAC=2;MLEAF=1.0;MQ=59.995;MQRankSum=-0.753;QD=26.755;ReadPosRankSum=0.012;SOR=0.7715	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.9575:86:0:0:89:2904:-259.751,-22.4164,0.0:86:100:86:0,84:3123,249,0:1:.:1:.:.:.:-0.00172627	1/1:123.9575:298:4:36:294:10200:-914.163,-76.5641,0.0:294:99:298:4,294:11018,777,0:.:1:1:.:.:.:-0.033653
chr9	22088260	.	C	T	3637.34	PASS	SOMATIC;NS=2;DP=427;DPB=427.0;AC=1;AN=3;AF=0.25;RO=296;AO=130;PRO=0.0;PAO=0.0;QR=11342;QA=5063;PQR=0.0;PQA=0.0;SRF=116;SRR=180;SAF=52;SAR=78;SRP=33.0588;SAP=14.302;AB=0.414013;ABP=23.1759;RUN=1;RPP=6.28421;RPPR=3.03964;RPL=72.0;RPR=58.0;EPP=3.61163;EPPR=18.5334;DPRA=2.77876;ODDS=71.4788;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986486;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.538;Dels=0.0;FS=0.426;HaplotypeScore=4.9314;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.007;QD=15.02;ReadPosRankSum=-0.747;SOR=0.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.152:106:113:4315:0:0:0.0,-30.6169,-388.353:0:0:106:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:119.076:314:183:7027:130:5063:-370.59,0.0,-547.268:130:42:313:176,123:39.0:0.407:2:4744,0,6940:.:1:1:.:.:1:-0.0135782
chr9	22102437	.	G	A	1626.55	REJECT	NS=1;DP=119;DPB=119.0;AC=1;AN=4;AF=0.5;RO=62;AO=57;PRO=0.0;PAO=0.0;QR=2403;QA=2225;PQR=0.0;PQA=0.0;SRF=33;SRR=29;SAF=33;SAR=24;SRP=3.57068;SAP=6.09608;AB=0.478992;ABP=3.46649;RUN=1;RPP=3.9627;RPPR=6.51267;RPL=26.0;RPR=31.0;EPP=3.0484;EPPR=3.0103;DPRA=0.0;ODDS=374.527;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.964912;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.341;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.477;QD=16.51;ReadPosRankSum=0.581;SOR=0.819;ClippingRankSum=0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.278:118:62:2403:57:2225:-167.991,0.0,-183.998:56:48:118:61,56:1977,0,2085:1:.:1:.:.:.:-0.00172627	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0135782
chr9	22103813	.	A	G	2386.12	PASS	SOMATIC;NS=2;DP=441;DPB=441.0;AC=1;AN=3;AF=0.25;RO=341;AO=100;PRO=0.0;PAO=0.0;QR=13035;QA=3722;PQR=0.0;PQA=0.0;SRF=199;SRR=142;SAF=61;SAR=39;SRP=23.6998;SAP=13.5202;AB=0.302115;ABP=115.592;RUN=1;RPP=6.13722;RPPR=4.08648;RPL=44.0;RPR=56.0;EPP=3.09716;EPPR=3.5261;DPRA=3.00909;ODDS=69.6088;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.96;PAIREDR=0.997067;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.058;Dels=0.0;FS=0.0;HaplotypeScore=7.768;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.029;QD=9.46;ReadPosRankSum=-0.592;SOR=0.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:148.892:108:110:4190:0:0:0.0,-29.8048,-377.123:0:0:108:106,0:.:0.0:0:.:.:.:0:.:.:0:-0.00172627	0/1:123.946:330:231:8845:100:3722:-245.152,0.0,-706.693:99:30:330:224,94:38.0:0.292:2:3150,0,8859:.:1:1:.:.:1:-0.0135782
chr9	22513841	.	T	C	7623.63	REJECT	NS=2;DP=320;DPB=371.0;AC=3;AN=4;AF=0.75;RO=96;AO=275;PRO=0.0;PAO=0.0;QR=3673;QA=10547;PQR=0.0;PQA=0.0;SRF=57;SRR=39;SAF=156;SAR=119;SRP=10.339;SAP=13.8203;AB=0.645756;ABP=53.0183;RUN=1;RPP=12.6832;RPPR=3.37221;RPL=120.0;RPR=155.0;EPP=17.6105;EPPR=23.3679;DPRA=0.0;ODDS=63.4192;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2182;MQMR=60.0;PAIRED=0.992727;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.287;Dels=0.0;FS=0.2375;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.22;MQRankSum=-0.159;QD=28.21;ReadPosRankSum=0.821;SOR=0.779	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3888:-349.986,-27.1167,0.0:99:100:99:0,99:4159,298,0:1:.:1:.:.:.:-0.00172627	0/1:129.501:270:96:3673:175:6659:-525.6,0.0,-257.004:174:64:270:96,174:6613,0,3292:.:1:1:.:.:.:-0.0135782
chr9	22513910	.	C	CA	6942.305	REJECT	NS=2;DP=307;DPB=445.333;AC=3;AN=4;AF=0.75;RO=93;AO=257;PRO=5.5;PAO=5.5;QR=3551;QA=9499;PQR=200.5;PQA=200.5;SRF=31;SRR=62;SAF=82;SAR=175;SRP=25.4488;SAP=76.0884;AB=0.631373;ABP=41.2367;RUN=1;RPP=10.1162;RPPR=4.90158;RPL=143.0;RPR=114.0;EPP=50.5377;EPPR=22.6469;DPRA=0.0;ODDS=60.8491;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.1556;MQMR=60.0;PAIRED=0.996109;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=22513910;HOMLEN=1;HOMSEQ=A;SVLEN=1;SVTYPE=INS;BaseQRankSum=-1.281;FS=1.49;MLEAC=1;MLEAF=0.75;MQ=60.215;MQRankSum=-1.953;QD=25.205;RPA=1,2;RU=A;ReadPosRankSum=0.523;SOR=1.3675;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:98:0:0:96:3609:-324.857,-26.0005,0.0:96:100:98:20,96:3649,295,0:1:.:1:1:.:.:-0.00172627	0/1:129.501:258:93:3551:161:5890:-461.075,0.0,-250.71:161:63:260:105,157:6250,0,3169:.:1:1:1:.:.:-0.0135782
chr9	27004338	.	G	A	5715.92	REJECT	NS=2;DP=372;DPB=428.0;AC=2;AN=4;AF=0.5;RO=217;AO=211;PRO=0.0;PAO=0.0;QR=8164;QA=8025;PQR=0.0;PQA=0.0;SRF=121;SRR=96;SAF=114;SAR=97;SRP=9.26454;SAP=5.9845;AB=0.492991;ABP=3.19295;RUN=1;RPP=23.8503;RPPR=11.426;RPL=128.0;RPR=83.0;EPP=29.7781;EPPR=23.274;DPRA=0.0;ODDS=363.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990521;PAIREDR=0.990783;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.028;Dels=0.0;FS=0.4305;HaplotypeScore=11.6289;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.424;QD=17.35;ReadPosRankSum=0.8015;SOR=0.68;ClippingRankSum=-0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:55:2099:56:2183:-166.4,0.0,-158.825:55:50:110:54,55:1919,0,1943:1:.:1:.:.:.:-0.00172627	0/1:129.501:316:162:6065:155:5842:-439.667,0.0,-459.714:154:49:316:162,154:5511,0,5763:.:1:1:.:.:.:-0.0135782
chr9	30042002	.	T	G	1406.22	REJECT	NS=1;DP=92;DPB=92.0;AC=1;AN=4;AF=0.5;RO=42;AO=50;PRO=0.0;PAO=0.0;QR=1615;QA=1916;PQR=0.0;PQA=0.0;SRF=25;SRR=17;SAF=31;SAR=19;SRP=6.31921;SAP=9.26414;AB=0.543478;ABP=4.52089;RUN=1;RPP=9.26414;RPPR=4.87156;RPL=19.0;RPR=31.0;EPP=11.5225;EPPR=16.2459;DPRA=0.0;ODDS=262.189;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.216;FS=0.793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.114;QD=18.48;ReadPosRankSum=0.114;SOR=0.801;ClippingRankSum=-0.427	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.0805:92:42:1615:50:1916:-147.554,0.0,-120.435:50:54:92:42,50:1728,0,1367:1:.:1:.:.:.:-0.00172627	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0135782
chr9	35074917	.	T	C	6645.515	REJECT	NS=2;DP=283;DPB=320.0;AC=3;AN=4;AF=0.75;RO=89;AO=231;PRO=0.0;PAO=0.0;QR=3414;QA=8933;PQR=0.0;PQA=0.0;SRF=63;SRR=26;SAF=154;SAR=77;SRP=36.4119;SAP=58.7448;AB=0.639676;ABP=44.8661;RUN=1;RPP=67.7691;RPPR=15.9171;RPL=74.0;RPR=157.0;EPP=3.0949;EPPR=5.96253;DPRA=0.0;ODDS=46.5514;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.979;Dels=0.0;FS=1.615;HaplotypeScore=3.8903;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.222;QD=26.755;ReadPosRankSum=-0.539;SOR=1.0345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:72:0:0:73:2813:-253.306,-19.791,0.0:72:100:72:0,72:2952,216,0:1:.:1:.:.:.:-0.00172627	0/1:129.501:246:89:3414:158:6120:-483.594,0.0,-240.196:158:64:246:88,158:6130,0,3039:.:1:1:.:.:.:-0.0135782
chr9	36840623	.	G	A	10777.95	REJECT	NS=2;DP=287;DPB=328.0;AC=4;AN=4;AF=1.0;RO=0;AO=327;PRO=0.0;PAO=0.0;QR=0;QA=12545;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=90;SAR=237;SRP=0.0;SAP=146.507;AB=0.0;ABP=0.0;RUN=1;RPP=84.829;RPPR=0.0;RPL=219.0;RPR=108.0;EPP=12.1013;EPPR=0.0;DPRA=0.0;ODDS=54.8595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.185;SOR=2.0045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.861:80:0:0:81:3099:-279.011,-21.9501,0.0:80:100:80:0,79:3326,237,0:1:.:1:.:.:.:-0.00172627	1/1:120.861:247:0:0:246:9446:-849.722,-66.6414,0.0:246:100:246:0,246:10578,734,0:.:1:1:.:.:.:-0.0135782
chr9	37920272	.	A	AAAAAC	1751.83	REJECT	NS=2;DP=91;DPB=351.106;AC=2;AN=2;AF=0.5;RO=2;AO=33;PRO=153.417;PAO=153.417;QR=78;QA=1230;PQR=5570.58;PQA=5570.58;SRF=2;SRR=0;SAF=28;SAR=5;SRP=7.35324;SAP=37.8197;AB=0.362637;ABP=17.9243;RUN=1;RPP=6.23461;RPPR=7.35324;RPL=20.0;RPR=13.0;EPP=3.0761;EPPR=7.35324;DPRA=0.0;ODDS=8.64631;GTI=0;TYPE=ins;CIGAR=1M5I65M;NUMALT=3;MEANALT=4.5;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=37920272;HOMLEN=60;HOMSEQ=AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC;SVLEN=5;SVTYPE=INS;BaseQRankSum=0.431;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.175;MQRankSum=-1.0165;QD=12.55;RPA=12;RU=AAAAC;ReadPosRankSum=1.075;SOR=1.309;STR;ClippingRankSum=-0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:68.18125:21:1:39:5:181:-19.2054,-4.54138,-6.4251:6:33:21:1,8:1012,694,733:1:.:1:.:.:.:-0.00172627	./1:115.0415:143:1:39:28:1049:-170.098,-83.6004,-79.2611:32:41:78:38,58:4618,2777,2147483647:.:1:1:1:.:.:-0.0135782
chr9	37920272	.	AAAAAC	A	1751.83	REJECT	SOMATIC;NS=2;DP=91;DPB=351.106;AC=1;AN=3;AF=0.25;RO=2;AO=35;PRO=153.417;PAO=138.917;QR=78;QA=1206;PQR=5570.58;PQA=5048.58;SRF=2;SRR=0;SAF=29;SAR=6;SRP=7.35324;SAP=35.8306;AB=0.448718;ABP=4.79202;RUN=1;RPP=3.07234;RPPR=7.35324;RPL=17.0;RPR=18.0;EPP=3.56868;EPPR=7.35324;DPRA=0.0;ODDS=8.64631;GTI=0;TYPE=del;CIGAR=1M5D60M;NUMALT=3;MEANALT=7.0;LEN=5;MQM=60.2857;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=37920277;HOMLEN=55;HOMSEQ=AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC;SVLEN=-5;SVTYPE=DEL;BaseQRankSum=1.28;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.778;QD=13.21;RPA=12;RU=AAAAC;ReadPosRankSum=1.531;SOR=1.759;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:37.3625:13:1:39:0:0:-19.2054,-21.645,-50.0744:0:0:13:.:.:.:.:.:.:.:.:-0.00172627	./1:115.0415:143:1:39:35:1206:-170.098,-83.532,-233.71:45:51:78:38,61:4618,2038,4384:.:1:1:1:.:.:-0.0135782
chr9	37920272	.	AAAAACAAAACAAAAC	A	1751.83	REJECT	NS=2;DP=91;DPB=351.106;AC=2;AN=3;AF=0.25;RO=2;AO=16;PRO=153.417;PAO=116.25;QR=78;QA=521;PQR=5570.58;PQA=4203.25;SRF=2;SRR=0;SAF=11;SAR=5;SRP=7.35324;SAP=7.89611;AB=0.175824;ABP=86.0751;RUN=1;RPP=3.0103;RPPR=7.35324;RPL=8.0;RPR=8.0;EPP=3.55317;EPPR=7.35324;DPRA=0.0;ODDS=8.64631;GTI=0;TYPE=del;CIGAR=1M15D50M;NUMALT=3;MEANALT=4.5;LEN=15;MQM=61.25;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=37920287;HOMLEN=45;HOMSEQ=AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC;SVLEN=-15;SVTYPE=DEL;BaseQRankSum=-0.418;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-1.255;QD=11.89;ReadPosRankSum=0.619;SOR=0.859;ClippingRankSum=-0.777	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:13,24:20:54:29:68.18125:21:1:39:7:240:-19.2054,-11.6967,-149.974:1012,261,1001:1:.:1:1:.:.:-0.00172627	0/1:88,43:26:22:102:131.083:78:1:39:9:281:-170.098,-204.763,-883.413:.:.:.:.:1:.:.:-0.0135782
chr9	71111910	.	C	T	3179.03	PASS	SOMATIC;NS=2;DP=466;DPB=466.0;AC=1;AN=3;AF=0.25;RO=346;AO=120;PRO=0.0;PAO=0.0;QR=13072;QA=4654;PQR=0.0;PQA=0.0;SRF=182;SRR=164;SAF=61;SAR=59;SRP=5.0437;SAP=3.08268;AB=0.35503;ABP=64.711;RUN=1;RPP=3.0103;RPPR=9.43685;RPL=60.0;RPR=60.0;EPP=41.3006;EPPR=43.1763;DPRA=2.64062;ODDS=80.7385;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991667;PAIREDR=0.99422;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.245;Dels=0.0;FS=1.349;HaplotypeScore=6.8872;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.134;QD=12.38;ReadPosRankSum=-0.828;SOR=0.603	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:124:128:4791:0:0:0.0,-34.6383,-431.115:0:0:124:121,0:.:0.0:0:.:.:.:0:.:.:0:-1.02292e-05	0/1:129.501:338:218:8281:120:4654:-327.096,0.0,-653.271:120:36:338:208,114:38.0:0.352:2:4212,0,8186:.:1:1:.:.:1:-0.008733
chr9	71115991	.	T	C	2621.8	PASS	SOMATIC;NS=2;DP=342;DPB=342.0;AC=1;AN=3;AF=0.25;RO=243;AO=99;PRO=0.0;PAO=0.0;QR=9230;QA=3782;PQR=0.0;PQA=0.0;SRF=163;SRR=80;SAF=64;SAR=35;SRP=64.5711;SAP=21.4568;AB=0.388235;ABP=30.6774;RUN=1;RPP=10.9285;RPPR=67.5736;RPL=40.0;RPR=59.0;EPP=14.6134;EPPR=3.01924;DPRA=2.93103;ODDS=55.22;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983539;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.397;Dels=0.0;FS=0.491;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.862;QD=13.68;ReadPosRankSum=-0.103;SOR=0.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:84:87:3280:0:0:0.0,-23.5558,-295.267:0:0:84:82,0:.:0.0:0:.:.:.:0:.:.:0:-1.02292e-05	0/1:129.501:253:156:5950:99:3782:-271.146,0.0,-466.161:99:39:253:149,94:38.0:0.38:2:3489,0,5780:.:1:1:.:.:1:-0.008733
chr9	71117523	.	C	T	4535.925	REJECT	NS=2;DP=282;DPB=322.0;AC=2;AN=4;AF=0.5;RO=156;AO=166;PRO=0.0;PAO=0.0;QR=6027;QA=6327;PQR=0.0;PQA=0.0;SRF=50;SRR=106;SAF=41;SAR=125;SRP=46.6625;SAP=95.311;AB=0.515528;ABP=3.68467;RUN=1;RPP=4.89399;RPPR=5.01474;RPL=89.0;RPR=77.0;EPP=35.7132;EPPR=17.2641;DPRA=0.0;ODDS=228.086;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993976;PAIREDR=0.99359;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.082;Dels=0.0;FS=8.6105;HaplotypeScore=6.9281;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5085;QD=19.125;ReadPosRankSum=-0.27;SOR=1.667;ClippingRankSum=0.435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6785:78:35:1347:44:1666:-128.577,0.0,-99.8861:43:55:78:35,42:1566,0,1268:1:.:1:.:.:.:-1.02292e-05	0/1:118.6785:243:121:4680:122:4661:-353.453,0.0,-355.167:122:50:243:121,122:4470,0,4499:.:1:1:.:.:.:-0.008733
chr9	71142594	.	AG	A	4746.66	REJECT	NS=2;DP=348;DPB=370.8;AC=2;AN=4;AF=0.5;RO=212;AO=182;PRO=15.5;PAO=13.5;QR=7996;QA=6705;PQR=377.0;PQA=303.0;SRF=95;SRR=117;SAF=80;SAR=102;SRP=7.96781;SAP=8.78498;AB=0.458438;ABP=8.96681;RUN=1;RPP=9.88265;RPPR=6.32897;RPL=103.0;RPR=79.0;EPP=3.77389;EPPR=7.10742;DPRA=0.0;ODDS=329.873;GTI=0;TYPE=del;CIGAR=1M1D3M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1648;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995283;technology.ILLUMINA=1.0;MQ0=0;END=71142595;HOMLEN=1;HOMSEQ=G;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-0.0275;FS=4.842;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.0705;QD=14.92;RPA=2,1;RU=G;ReadPosRankSum=1.5805;SOR=0.794;STR;ClippingRankSum=0.192	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:51:1906:53:1922:-144.547,0.0,-146.656:53:51:104:47,54:1634,0,1625:1:.:1:1:.:.:-1.02292e-05	0/1:129.501:295:161:6090:129:4783:-354.036,0.0,-474.83:130:44:290:145,143:4618,0,6032:.:1:1:1:.:.:-0.008733
chr9	72002554	.	G	A	3546.38	PASS	SOMATIC;NS=2;DP=484;DPB=484.0;AC=1;AN=3;AF=0.25;RO=351;AO=133;PRO=0.0;PAO=0.0;QR=13404;QA=5116;PQR=0.0;PQA=0.0;SRF=173;SRR=178;SAF=67;SAR=66;SRP=3.16496;SAP=3.02663;AB=0.361413;ABP=64.4016;RUN=1;RPP=6.68384;RPPR=14.4492;RPL=59.0;RPR=74.0;EPP=4.33278;EPPR=23.1103;DPRA=3.17241;ODDS=73.2932;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.609;Dels=0.0;FS=0.817;HaplotypeScore=7.7147;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.489;QD=12.49;ReadPosRankSum=1.357;SOR=0.667	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:112:116:4419:0:0:0.0,-31.4048,-397.663:0:0:112:108,0:.:0.0:0:.:.:.:0:.:.:0:-1.02292e-05	0/1:129.501:368:235:8985:133:5116:-360.494,0.0,-708.45:133:36:368:224,128:38.0:0.365:2:4623,0,8919:.:1:1:.:.:1:-0.008733
chr9	85511305	.	A	C	2306.04	REJECT	NS=1;DP=69;DPB=69.0;AC=2;AN=4;AF=1.0;RO=0;AO=69;PRO=0.0;PAO=0.0;QR=0;QA=2628;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=45;SAR=24;SRP=0.0;SAP=16.8888;AB=0.0;ABP=0.0;RUN=1;RPP=12.1053;RPPR=0.0;RPL=26.0;RPR=43.0;EPP=10.0912;EPPR=0.0;DPRA=0.0;ODDS=47.6568;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=38.09;SOR=1.478	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:69:0:0:69:2628:-236.659,-18.6971,0.0:69:100:69:0,69:2818,207,0:1:.:1:.:.:.:-1.02292e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.008733
chr9	87478172	.	T	G	2649.17	PASS	SOMATIC;NS=2;DP=439;DPB=439.0;AC=1;AN=3;AF=0.25;RO=336;AO=103;PRO=0.0;PAO=0.0;QR=12794;QA=3990;PQR=0.0;PQA=0.0;SRF=157;SRR=179;SAF=52;SAR=51;SRP=6.13825;SAP=3.03138;AB=0.315951;ABP=98.9281;RUN=1;RPP=7.75381;RPPR=12.3425;RPL=44.0;RPR=59.0;EPP=3.03138;EPPR=3.94093;DPRA=2.88496;ODDS=71.5024;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985119;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.483;Dels=0.0;FS=0.431;HaplotypeScore=6.7264;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.844;QD=10.72;ReadPosRankSum=2.0;SOR=0.659	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:110:113:4299:0:0:0.0,-30.6271,-386.946:0:0:110:107,0:.:0.0:0:.:.:.:0:.:.:0:-1.02292e-05	0/1:129.501:325:223:8495:103:3990:-270.584,0.0,-675.794:103:32:325:213,99:38.0:0.319:2:3512,0,8483:.:1:1:.:.:1:-0.008733
chr9	87479105	.	G	A	5131.6	REJECT	NS=2;DP=303;DPB=352.0;AC=2;AN=4;AF=0.5;RO=166;AO=186;PRO=0.0;PAO=0.0;QR=6372;QA=7039;PQR=0.0;PQA=0.0;SRF=79;SRR=87;SAF=95;SAR=91;SRP=3.84749;SAP=3.19709;AB=0.528409;ABP=5.47788;RUN=1;RPP=3.0103;RPPR=3.06262;RPL=93.0;RPR=93.0;EPP=3.057;EPPR=3.2196;DPRA=0.0;ODDS=309.573;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983871;PAIREDR=0.993976;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5105;Dels=0.0;FS=3.4925;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.175;QD=18.03;ReadPosRankSum=0.3545;SOR=0.889;ClippingRankSum=0.473	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:47:1788:49:1865:-141.862,0.0,-134.945:48:51:94:46,47:1629,0,1595:1:.:1:.:.:.:-1.02292e-05	0/1:129.501:255:119:4584:137:5174:-396.105,0.0,-343.002:136:53:255:119,136:4972,0,4358:.:1:1:.:.:.:-0.008733
chr9	87479651	.	C	T	172.764	REJECT	NS=2;DP=46;DPB=105.633;AC=2;AN=2;AF=0.0;RO=5;AO=7;PRO=49.0667;PAO=22.15;QR=153;QA=28;PQR=1709.63;PQA=502.05;SRF=1;SRR=4;SAF=0;SAR=7;SRP=6.91895;SAP=18.2106;AB=0.0810811;ABP=59.4099;RUN=1;RPP=18.2106;RPPR=6.91895;RPL=0.0;RPR=7.0;EPP=18.2106;EPPR=13.8677;DPRA=0.0;ODDS=4.14484;GTI=0;TYPE=snp;CIGAR=1X29M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.8476:9:2:57:4:8:0.0,-1.61859,-157.76:4:67:6:.:.:1:.:.:.:-1.25358	./1:132.862:37:3:96:3:20:-21.473,-85.9987,-885.534:3:11:28:.:.:1:.:.:.:-0.008733
chr9	87479651	.	CTTTTT	C	172.764	REJECT	NS=2;DP=46;DPB=105.633;AC=2;AN=2;AF=0.0;RO=5;AO=3;PRO=49.0667;PAO=29.5667;QR=153;QA=69;PQR=1709.63;PQA=1011.13;SRF=1;SRR=4;SAF=1;SAR=2;SRP=6.91895;SAP=3.73412;AB=0.0810811;ABP=59.4099;RUN=1;RPP=9.52472;RPPR=6.91895;RPL=3.0;RPR=0.0;EPP=3.73412;EPPR=13.8677;DPRA=4.11111;ODDS=4.14484;GTI=0;TYPE=del;CIGAR=1M5D24M;NUMALT=4;MEANALT=13.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.8476:9:2:57:0:0:0.0,-2.17198,-25.2513:0:0:6:.:.:1:.:.:.:-1.25358	./1:132.862:37:3:96:3:69:-21.473,-19.1515,-77.5611:3:11:28:.:.:1:.:.:.:-0.008733
chr9	87479651	.	CTTTTTT	C	172.764	REJECT	NS=2;DP=46;DPB=105.633;AC=2;AN=3;AF=0.25;RO=5;AO=14;PRO=49.0667;PAO=25.5667;QR=153;QA=356;PQR=1709.63;PQA=867.633;SRF=1;SRR=4;SAF=7;SAR=7;SRP=6.91895;SAP=3.0103;AB=0.378378;ABP=7.76406;RUN=1;RPP=5.49198;RPPR=6.91895;RPL=9.0;RPR=5.0;EPP=3.63072;EPPR=13.8677;DPRA=4.11111;ODDS=4.14484;GTI=0;TYPE=del;CIGAR=1M6D23M;NUMALT=4;MEANALT=13.0;LEN=6;MQM=58.9286;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.8476:9:2:57:0:0:0.0,-2.71518,-31.7463:0:0:6:.:.:1:.:.:.:-1.25358	0/1:132.862:37:3:96:14:356:-21.473,0.0,-97.2579:14:50:28:.:.:1:.:.:.:-0.008733
chr9	87479651	.	CTTTTTTT	C	172.764	REJECT	NS=2;DP=46;DPB=105.633;AC=2;AN=2;AF=0.0;RO=5;AO=5;PRO=49.0667;PAO=22.65;QR=153;QA=137;PQR=1709.63;PQA=730.55;SRF=1;SRR=4;SAF=1;SAR=4;SRP=6.91895;SAP=6.91895;AB=0.135135;ABP=45.7942;RUN=1;RPP=3.44459;RPPR=6.91895;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=13.8677;DPRA=4.11111;ODDS=4.14484;GTI=0;TYPE=del;CIGAR=1M7D22M;NUMALT=4;MEANALT=13.0;LEN=7;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.8476:9:2:57:0:0:0.0,-4.34373,-49.0697:0:0:6:.:.:1:.:.:.:-1.25358	./1:132.862:37:3:96:5:137:-21.473,-25.8578,-216.664:5:18:28:.:.:1:.:.:.:-0.008733
chr9	87563370	.	T	C	2354.83	PASS	SOMATIC;NS=2;DP=314;DPB=314.0;AC=1;AN=3;AF=0.25;RO=226;AO=88;PRO=0.0;PAO=0.0;QR=8492;QA=3409;PQR=0.0;PQA=0.0;SRF=153;SRR=73;SAF=56;SAR=32;SRP=64.5033;SAP=17.2236;AB=0.372881;ABP=36.1345;RUN=1;RPP=7.84676;RPPR=28.9911;RPL=37.0;RPR=51.0;EPP=5.47788;EPPR=3.04873;DPRA=3.02564;ODDS=49.6121;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=4.589;Dels=0.0;FS=5.014;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.161;QD=13.18;ReadPosRankSum=-0.362;SOR=0.437	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.199:76:78:2889:0:0:0.0,-21.1203,-260.124:0:0:76:75,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:121.5995:236:148:5603:88:3409:-242.72,0.0,-440.131:88:37:236:142,85:39.0:0.377:2:3139,0,5582:.:1:1:.:.:1:-0.008733
chr9	87563460	.	C	A	3041.79	PASS	SOMATIC;NS=2;DP=408;DPB=408.0;AC=1;AN=3;AF=0.25;RO=292;AO=116;PRO=0.0;PAO=0.0;QR=11117;QA=4388;PQR=0.0;PQA=0.0;SRF=159;SRR=133;SAF=62;SAR=54;SRP=8.03741;SAP=4.20835;AB=0.370607;ABP=48.528;RUN=1;RPP=3.08518;RPPR=12.6481;RPL=59.0;RPR=57.0;EPP=6.67934;EPPR=3.27802;DPRA=3.29474;ODDS=60.2151;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.512;Dels=0.0;FS=1.944;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.374;QD=12.68;ReadPosRankSum=-1.511;SOR=0.583	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:95:3570:0:0:0.0,-25.7251,-321.348:0:0:93:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:129.501:313:197:7547:116:4388:-309.938,0.0,-594.04:116:37:313:191,112:37.0:0.371:2:3998,0,7495:.:1:1:.:.:1:-0.008733
chr9	93464044	.	G	A	1973.975	REJECT	NS=2;DP=327;DPB=384.0;AC=2;AN=4;AF=0.5;RO=288;AO=96;PRO=0.0;PAO=0.0;QR=11003;QA=3599;PQR=0.0;PQA=0.0;SRF=135;SRR=153;SAF=43;SAR=53;SRP=5.45321;SAP=5.27225;AB=0.25;ABP=211.472;RUN=1;RPP=3.0103;RPPR=4.09604;RPL=48.0;RPR=48.0;EPP=18.3011;EPPR=6.65958;DPRA=0.0;ODDS=159.775;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996528;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.245;Dels=0.0;FS=2.7175;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.07;QD=10.02;ReadPosRankSum=-0.229;SOR=0.714;ClippingRankSum=-0.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0985:111:59:2185:53:1991:-148.879,0.0,-166.323:53:47:111:57,53:1851,0,1943:1:.:1:.:.:.:-0.000209932	0/1:118.0985:271:229:8818:43:1608:-70.9669,0.0,-719.529:43:16:271:228,43:968,0,9022:.:1:1:.:.:.:-0.008733
chr9	93464111	.	A	G	4840.715	REJECT	NS=2;DP=225;DPB=265.0;AC=3;AN=4;AF=0.75;RO=75;AO=190;PRO=0.0;PAO=0.0;QR=2882;QA=7078;PQR=0.0;PQA=0.0;SRF=23;SRR=52;SAF=60;SAR=130;SRP=27.3597;SAP=59.0114;AB=0.6;ABP=19.0792;RUN=1;RPP=49.8227;RPPR=6.51361;RPL=127.0;RPR=63.0;EPP=3.74174;EPPR=6.51361;DPRA=0.0;ODDS=45.0288;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994737;PAIREDR=0.986667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.364;Dels=0.0;FS=0.299;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.08;QD=22.96;ReadPosRankSum=0.349;SOR=1.115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:1:27:79:2941:-262.355,-19.2232,0.0:77:99:78:0,76:3103,227,0:1:.:1:.:.:.:-0.000209932	0/1:129.501:185:74:2855:111:4137:-322.117,0.0,-206.766:111:60:185:74,111:4027,0,2631:.:1:1:.:.:.:-0.008733
chr9	93466407	.	A	G	8279.46	REJECT	NS=2;DP=358;DPB=403.0;AC=3;AN=4;AF=0.75;RO=112;AO=291;PRO=0.0;PAO=0.0;QR=4358;QA=10995;PQR=0.0;PQA=0.0;SRF=61;SRR=51;SAF=172;SAR=119;SRP=4.94911;SAP=23.9714;AB=0.644444;ABP=60.0959;RUN=1;RPP=15.5541;RPPR=3.08785;RPL=125.0;RPR=166.0;EPP=6.30109;EPPR=5.80219;DPRA=0.0;ODDS=55.8289;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993127;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.141;Dels=0.0;FS=1.6235;HaplotypeScore=6.8068;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.019;QD=24.185;ReadPosRankSum=-3.053;SOR=1.0535	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:84:0:0:88:3295:-296.614,-23.8202,0.0:84:100:84:0,81:3355,243,0:1:.:1:.:.:.:-0.000209932	0/1:129.501:314:112:4358:203:7700:-607.251,0.0,-306.694:202:64:314:112,202:7644,0,3956:.:1:1:.:.:.:-0.008733
chr9	93466631	.	G	A	5550.535	REJECT	NS=2;DP=365;DPB=422.0;AC=2;AN=4;AF=0.5;RO=217;AO=205;PRO=0.0;PAO=0.0;QR=8271;QA=7908;PQR=0.0;PQA=0.0;SRF=90;SRR=127;SAF=93;SAR=112;SRP=16.7096;SAP=6.83421;AB=0.485782;ABP=3.75128;RUN=1;RPP=4.80044;RPPR=5.90226;RPL=96.0;RPR=109.0;EPP=10.7323;EPPR=4.70145;DPRA=0.0;ODDS=330.934;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9415;MQMR=60.0;PAIRED=0.995122;PAIREDR=0.995392;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3575;Dels=0.0;FS=1.568;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.1145;QD=18.48;ReadPosRankSum=1.161;SOR=0.5975;ClippingRankSum=0.003	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0125:110:51:1946:61:2356:-181.682,0.0,-144.81:61:55:110:48,61:2215,0,1688:1:.:1:.:.:.:-0.000209932	0/1:119.0125:309:166:6325:144:5552:-415.442,0.0,-484.942:143:46:309:165,143:5232,0,6051:.:1:1:.:.:.:-0.008733
chr9	93469911	.	G	T	8600.345000000001	REJECT	NS=2;DP=347;DPB=406.0;AC=3;AN=4;AF=0.75;RO=100;AO=306;PRO=0.0;PAO=0.0;QR=3868;QA=11803;PQR=0.0;PQA=0.0;SRF=51;SRR=49;SAF=181;SAR=125;SRP=3.09716;SAP=25.2643;AB=0.667774;ABP=76.6023;RUN=1;RPP=4.40118;RPPR=6.13722;RPL=160.0;RPR=146.0;EPP=16.7488;EPPR=3.09716;DPRA=0.0;ODDS=66.5013;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.941176;PAIREDR=0.94;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.887;Dels=0.0;FS=1.3845;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.835;QD=27.2;ReadPosRankSum=-0.372;SOR=1.29	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:105:4043:-363.9,-28.4552,0.0:100:100:100:0,95:3921,286,0:1:.:1:.:.:.:-0.000209932	0/1:129.501:294:100:3868:201:7760:-616.434,0.0,-266.392:197:67:294:94,194:7522,0,3212:.:1:1:.:.:.:-0.008733
chr9	93606309	.	G	A	10294.9	REJECT	NS=2;DP=396;DPB=451.0;AC=2;AN=4;AF=0.5;RO=109;AO=342;PRO=0.0;PAO=0.0;QR=4160;QA=12887;PQR=0.0;PQA=0.0;SRF=56;SRR=53;SAF=173;SAR=169;SRP=3.1896;SAP=3.11189;AB=0.758315;ABP=264.401;RUN=1;RPP=5.06748;RPPR=3.03022;RPL=180.0;RPR=162.0;EPP=13.1692;EPPR=11.7958;DPRA=0.0;ODDS=257.372;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994152;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1095;Dels=0.0;FS=0.787;HaplotypeScore=6.8011;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5735;QD=25.15;ReadPosRankSum=0.0595;SOR=0.6985;ClippingRankSum=-0.623	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:48:1867:59:2208:-169.724,0.0,-139.094:59:55:106:47,59:2002,0,1691:1:.:1:.:.:.:-0.000209932	0/1:129.501:343:61:2293:283:10679:-867.391,0.0,-113.521:282:82:343:61,281:10862,0,1524:.:1:1:.:.:.:-0.008733
chr9	93639849	.	G	A	1603.5549999999998	REJECT	NS=2;DP=305;DPB=348.0;AC=2;AN=4;AF=0.5;RO=266;AO=82;PRO=0.0;PAO=0.0;QR=10226;QA=3161;PQR=0.0;PQA=0.0;SRF=161;SRR=105;SAF=55;SAR=27;SRP=28.6108;SAP=23.7717;AB=0.235632;ABP=214.267;RUN=1;RPP=15.8273;RPPR=26.8149;RPL=30.0;RPR=52.0;EPP=3.434;EPPR=25.0842;DPRA=0.0;ODDS=134.877;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.97561;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7695;Dels=0.0;FS=3.1235;HaplotypeScore=2.9241;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6155;QD=9.78;ReadPosRankSum=-0.157;SOR=1.061;ClippingRankSum=1.11	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.355:84:41:1587:44:1696:-129.643,0.0,-119.83:43:51:84:41,43:1422,0,1490:1:.:1:.:.:.:-0.000209932	0/1:120.355:263:225:8639:38:1465:-60.5762,0.0,-705.83:38:14:263:225,38:858,0,8799:.:1:1:.:.:.:-0.008733
chr9	93650015	.	T	A	4038.93	REJECT	NS=2;DP=275;DPB=312.0;AC=2;AN=4;AF=0.5;RO=159;AO=152;PRO=0.0;PAO=0.0;QR=6088;QA=5636;PQR=0.0;PQA=0.0;SRF=108;SRR=51;SAF=110;SAR=42;SRP=47.3821;SAP=69.0688;AB=0.487179;ABP=3.45573;RUN=1;RPP=57.9257;RPPR=88.244;RPL=45.0;RPR=107.0;EPP=9.92473;EPPR=3.02396;DPRA=0.0;ODDS=156.098;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986842;PAIREDR=0.993711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.2235;Dels=0.0;FS=3.1225;HaplotypeScore=5.8658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6515;QD=15.37;ReadPosRankSum=0.577;SOR=1.1715;ClippingRankSum=0.753	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4095:68:42:1564:27:1006:-71.9126,0.0,-122.145:26:39:68:41,26:862,0,1458:1:.:1:.:.:.:-0.000209932	0/1:120.4095:240:117:4524:125:4630:-350.954,0.0,-341.45:124:52:240:115,124:4402,0,4286:.:1:1:.:.:.:-0.008733
chr9	93657761	.	A	T	2179.66	REJECT	NS=2;DP=163;DPB=186.0;AC=2;AN=4;AF=0.5;RO=102;AO=84;PRO=0.0;PAO=0.0;QR=3854;QA=3227;PQR=0.0;PQA=0.0;SRF=77;SRR=25;SAF=63;SAR=21;SRP=60.5756;SAP=48.6112;AB=0.451613;ABP=6.79286;RUN=1;RPP=96.0734;RPPR=84.845;RPL=12.0;RPR=72.0;EPP=20.4855;EPPR=24.8102;DPRA=0.0;ODDS=112.178;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5;Dels=0.0;FS=0.0;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.708;QD=15.875;ReadPosRankSum=0.2505;SOR=0.7225;ClippingRankSum=-0.142	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:44:26:1005:19:719:-52.5955,0.0,-78.3718:19:42:44:25,19:677,0,900:1:.:1:.:.:.:-0.000209932	0/1:129.501:141:76:2849:65:2508:-187.493,0.0,-218.18:65:46:141:76,65:2426,0,2735:.:1:1:.:.:.:-0.008733
chr9	93754036	.	T	C	6199.73	REJECT	NS=2;DP=363;DPB=409.0;AC=2;AN=4;AF=0.5;RO=193;AO=216;PRO=0.0;PAO=0.0;QR=7435;QA=8298;PQR=0.0;PQA=0.0;SRF=93;SRR=100;SAF=100;SAR=116;SRP=3.56161;SAP=5.5839;AB=0.528117;ABP=5.81888;RUN=1;RPP=9.8062;RPPR=12.4725;RPL=95.0;RPR=121.0;EPP=4.01561;EPPR=3.02155;DPRA=0.0;ODDS=253.903;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9855;Dels=0.0;FS=6.008;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.944;QD=19.99;ReadPosRankSum=0.3855;SOR=0.4335;ClippingRankSum=-0.9	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:39:1502:51:1948:-150.97,0.0,-110.824:51:57:89:38,51:1875,0,1301:1:.:1:.:.:.:-0.000209932	0/1:129.501:318:154:5933:165:6350:-484.732,0.0,-447.255:164:52:318:154,164:6142,0,5713:.:1:1:.:.:.:-0.008733
chr9	93754829	.	A	C	5680.045	REJECT	NS=2;DP=359;DPB=411.0;AC=2;AN=4;AF=0.5;RO=212;AO=199;PRO=0.0;PAO=0.0;QR=8261;QA=7706;PQR=0.0;PQA=0.0;SRF=91;SRR=121;SAF=83;SAR=116;SRP=12.2288;SAP=14.8934;AB=0.484185;ABP=3.90319;RUN=1;RPP=3.89417;RPPR=5.01789;RPL=104.0;RPR=95.0;EPP=6.16385;EPPR=19.3988;DPRA=0.0;ODDS=314.112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98995;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.208;Dels=0.0;FS=0.794;HaplotypeScore=15.6171;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5545;QD=16.875;ReadPosRankSum=0.532;SOR=0.7935;ClippingRankSum=-0.758	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.611:103:56:2204:48:1842:-137.598,0.0,-170.181:47:46:103:56,47:1635,0,2045:1:.:1:.:.:.:-0.000209932	0/1:120.611:307:156:6057:151:5864:-444.269,0.0,-461.625:151:49:307:156,151:5646,0,5862:.:1:1:.:.:.:-0.008733
chr9	97885616	.	T	C	818.786	PASS	SOMATIC;NS=2;DP=171;DPB=171.0;AC=1;AN=3;AF=0.25;RO=127;AO=44;PRO=0.0;PAO=0.0;QR=4735;QA=1602;PQR=0.0;PQA=0.0;SRF=127;SRR=0;SAF=44;SAR=0;SRP=278.787;SAP=98.5551;AB=0.346457;ABP=29.0167;RUN=1;RPP=53.5464;RPPR=126.545;RPL=6.0;RPR=38.0;EPP=53.5464;EPPR=126.545;DPRA=2.88636;ODDS=28.46;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977273;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.519;Dels=0.0;FS=0.0;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.55;QD=11.16;ReadPosRankSum=1.178;SOR=0.252	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:123.434:44:44:1650:0:0:0.0,-11.934,-148.731:0:0:44:44,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:118.346:127:83:3085:44:1602:-109.792,0.0,-243.254:44:35:127:82,44:36.0:0.352:2:1445,0,3049:.:1:1:.:.:1:-0.008733
chr9	98209594	.	G	A	6934.56	REJECT	NS=2;DP=411;DPB=469.0;AC=2;AN=4;AF=0.5;RO=225;AO=243;PRO=0.0;PAO=0.0;QR=8422;QA=9214;PQR=0.0;PQA=0.0;SRF=107;SRR=118;SAF=147;SAR=96;SRP=4.17807;SAP=26.2531;AB=0.518124;ABP=4.34837;RUN=1;RPP=3.01924;RPPR=3.79203;RPL=122.0;RPR=121.0;EPP=5.02092;EPPR=3.4832;DPRA=0.0;ODDS=354.476;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995556;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.429;Dels=0.0;FS=13.454;HaplotypeScore=13.8063;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.979;QD=18.215;ReadPosRankSum=0.5255;SOR=1.04;ClippingRankSum=-0.72	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.448:115:61:2297:55:2069:-154.785,0.0,-175.315:55:47:115:59,55:1937,0,2086:1:.:1:.:.:.:-0.000209932	0/1:119.448:353:164:6125:188:7145:-547.378,0.0,-455.592:188:53:352:164,188:6980,0,5784:.:1:1:.:.:.:-0.008733
chr9	98232223	.	GA	G	3594.585	REJECT	NS=2;DP=278;DPB=308.0;AC=2;AN=4;AF=0.5;RO=149;AO=142;PRO=23.0;PAO=20.0;QR=5608;QA=5259;PQR=844.0;PQA=740.0;SRF=44;SRR=105;SAF=49;SAR=93;SRP=57.2388;SAP=32.6157;AB=0.47651;ABP=4.43852;RUN=1;RPP=13.3477;RPPR=25.1768;RPL=84.0;RPR=58.0;EPP=38.2432;EPPR=5.47325;DPRA=0.0;ODDS=207.58;GTI=0;TYPE=del;CIGAR=1M1D10M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986577;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8255;FS=3.4325;MLEAC=1;MLEAF=0.5;MQ=60.145;MQRankSum=-0.5705;QD=11.02;RPA=8,7;RU=A;ReadPosRankSum=-1.073;SOR=0.7395;STR;ClippingRankSum=-0.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:35:1330:34:1252:-93.4839,0.0,-106.924:34:48:70:38,34:824,0,919:1:.:1:.:.:.:-0.000209932	0/1:129.501:243:114:4278:108:4007:-317.674,0.0,-345.144:113:49:231:122,118:3249,0,3230:.:1:1:.:.:.:-0.008733
chr9	103503843	.	A	G	1781.925	REJECT	NS=2;DP=341;DPB=394.0;AC=2;AN=4;AF=0.5;RO=301;AO=93;PRO=0.0;PAO=0.0;QR=11557;QA=3576;PQR=0.0;PQA=0.0;SRF=181;SRR=120;SAF=65;SAR=28;SRP=29.8543;SAP=34.9753;AB=0.236041;ABP=241.453;RUN=1;RPP=20.0318;RPPR=28.1229;RPL=33.0;RPR=60.0;EPP=6.95631;EPPR=45.7833;DPRA=0.0;ODDS=176.713;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9103;PAIRED=1.0;PAIREDR=0.996678;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6535;Dels=0.0;FS=7.029;HaplotypeScore=6.8435;MLEAC=1;MLEAF=0.5;MQ=59.895;MQRankSum=1.2955;QD=9.38;ReadPosRankSum=-0.916;SOR=1.3135;ClippingRankSum=0.527	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:58:2190:47:1823:-136.016,0.0,-168.654:46:45:102:55,45:1547,0,1813:1:.:1:.:.:.:-0.000209932	0/1:129.501:289:243:9367:46:1753:-79.3923,0.0,-764.26:46:16:289:243,46:1104,0,9624:.:1:1:.:.:.:-0.008733
chr9	114010861	.	G	A	2637.56	PASS	SOMATIC;NS=2;DP=384;DPB=384.0;AC=1;AN=3;AF=0.25;RO=283;AO=100;PRO=0.0;PAO=0.0;QR=10921;QA=3858;PQR=0.0;PQA=0.0;SRF=158;SRR=125;SAF=50;SAR=50;SRP=11.3662;SAP=3.0103;AB=0.347222;ABP=61.3988;RUN=1;RPP=6.13722;RPPR=9.46333;RPL=44.0;RPR=56.0;EPP=3.35774;EPPR=7.80595;DPRA=3.0;ODDS=60.7578;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992933;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.21;Dels=0.0;FS=5.762;HaplotypeScore=7.8458;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.752;QD=11.99;ReadPosRankSum=-0.835;SOR=0.446	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:94:96:3642:0:0:0.0,-25.9608,-327.768:0:0:94:93,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:129.501:288:187:7279:100:3858:-269.273,0.0,-576.959:100:35:287:180,96:38.0:0.35:2:3480,0,7291:.:1:1:.:.:1:-0.008733
chr9	127951863	.	G	A	2483.98	REJECT	NS=1;DP=73;DPB=73.0;AC=2;AN=4;AF=1.0;RO=0;AO=73;PRO=0.0;PAO=0.0;QR=0;QA=2808;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=45;SAR=28;SRP=0.0;SAP=11.607;AB=0.0;ABP=0.0;RUN=1;RPP=8.03741;RPPR=0.0;RPL=30.0;RPR=43.0;EPP=3.27802;EPPR=0.0;DPRA=0.0;ODDS=50.2012;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986301;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.93;SOR=1.308	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:72:0:0:73:2808:-252.872,-19.8021,0.0:72:100:72:0,72:2995,217,0:1:.:1:.:.:.:-0.000209932	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.008733
chr9	130549571	.	G	A	10721.3	REJECT	NS=2;DP=380;DPB=431.0;AC=2;AN=4;AF=0.5;RO=87;AO=344;PRO=0.0;PAO=0.0;QR=3342;QA=13321;PQR=0.0;PQA=0.0;SRF=44;SRR=43;SAF=158;SAR=186;SRP=3.03526;SAP=7.95924;AB=0.798144;ABP=335.78;RUN=1;RPP=12.1254;RPPR=6.03039;RPL=191.0;RPR=153.0;EPP=18.7913;EPPR=6.03039;DPRA=0.0;ODDS=118.518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991279;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.25;Dels=0.0;FS=2.912;HaplotypeScore=4.9322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.372;QD=24.355;ReadPosRankSum=0.1035;SOR=0.694;ClippingRankSum=0.249	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5565:100:47:1769:54:2100:-161.666,0.0,-131.847:53:53:100:47,53:1782,0,1554:1:.:1:.:.:.:-0.000209932	0/1:119.5565:329:40:1573:290:11221:-919.846,0.0,-52.0816:289:88:329:40,289:11574,0,777:.:1:1:.:.:.:-0.008733
chr9	132048664	.	G	A	9197.62	REJECT	NS=2;DP=346;DPB=398.0;AC=2;AN=4;AF=0.5;RO=94;AO=301;PRO=0.0;PAO=0.0;QR=3609;QA=11488;PQR=0.0;PQA=0.0;SRF=49;SRR=45;SAF=152;SAR=149;SRP=3.37991;SAP=3.07523;AB=0.756281;ABP=230.066;RUN=1;RPP=5.61462;RPPR=3.37991;RPL=160.0;RPR=141.0;EPP=4.2295;EPPR=10.4949;DPRA=0.0;ODDS=138.564;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993355;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5015;Dels=0.0;FS=6.4065;HaplotypeScore=12.681;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.117;QD=25.275;ReadPosRankSum=0.301;SOR=0.409;ClippingRankSum=0.717	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.746:102:53:2054:50:1857:-139.248,0.0,-156.966:50:49:102:51,50:1738,0,1784:1:.:1:.:.:.:-0.000209932	0/1:117.746:295:41:1555:251:9631:-787.216,0.0,-60.7775:251:86:292:41,251:9947,0,844:.:1:1:.:.:.:-0.008733
chr9	133710804	.	T	C	6079.505	REJECT	NS=2;DP=172;DPB=200.0;AC=4;AN=4;AF=1.0;RO=0;AO=199;PRO=0.0;PAO=0.0;QR=0;QA=7447;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=179;SAR=20;SRP=0.0;SAP=278.875;AB=0.0;ABP=0.0;RUN=1;RPP=85.6026;RPPR=0.0;RPL=56.0;RPR=143.0;EPP=27.1147;EPPR=0.0;DPRA=0.0;ODDS=38.6175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.89;SOR=4.22	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.552:56:0:0:55:2093:-188.541,-14.8963,0.0:56:100:56:0,57:2601,175,0:1:.:1:.:.:.:-0.000209932	1/1:129.501:144:0:0:144:5354:-481.743,-38.9557,0.0:144:100:144:0,144:5946,418,0:.:1:1:.:.:.:-0.008733
chr9	133710819	.	T	TC	7950.61	REJECT	NS=2;DP=216;DPB=342.667;AC=4;AN=4;AF=1.0;RO=0;AO=247;PRO=5.0;PAO=12.0;QR=0;QA=9061;PQR=89.5;PQA=312.5;SRF=0;SRR=0;SAF=216;SAR=31;SRP=0.0;SAP=303.895;AB=0.0;ABP=0.0;RUN=1;RPP=31.5735;RPPR=0.0;RPL=95.0;RPR=152.0;EPP=3.08942;EPPR=0.0;DPRA=0.0;ODDS=44.8589;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=133710819;HOMLEN=0;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=23.84;SOR=4.0075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.724:64:0:0:63:2347:-215.88,-17.6069,0.0:66:100:66:11,78:2996,205,0:1:.:1:1:.:.:-0.000209932	1/1:123.724:185:0:0:184:6714:-619.598,-51.1102,0.0:185:100:185:38,223:8409,557,0:.:1:1:1:.:.:-0.008733
chr9	133761001	.	A	G	1561.4650000000001	REJECT	NS=2;DP=329;DPB=374.0;AC=2;AN=4;AF=0.5;RO=292;AO=82;PRO=0.0;PAO=0.0;QR=11368;QA=3098;PQR=0.0;PQA=0.0;SRF=123;SRR=169;SAF=35;SAR=47;SRP=18.746;SAP=6.82362;AB=0.219251;ABP=259.058;RUN=1;RPP=3.96363;RPPR=3.04005;RPL=44.0;RPR=38.0;EPP=6.82362;EPPR=26.3313;DPRA=0.0;ODDS=118.55;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.885;Dels=0.0;FS=0.685;HaplotypeScore=5.899;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2695;QD=9.455;ReadPosRankSum=0.726;SOR=0.6445;ClippingRankSum=0.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:46:1807:43:1656:-124.947,0.0,-138.535:42:48:87:45,41:1440,0,1683:1:.:1:.:.:.:-0.000209932	0/1:129.501:285:246:9561:39:1442:-52.4891,0.0,-782.805:39:14:285:246,39:739,0,9883:.:1:1:.:.:.:-0.008733
chr9	135003565	.	T	C	1561.46	REJECT	NS=2;DP=348;DPB=396.0;AC=2;AN=4;AF=0.5;RO=315;AO=81;PRO=0.0;PAO=0.0;QR=12127;QA=3089;PQR=0.0;PQA=0.0;SRF=155;SRR=160;SAF=36;SAR=45;SRP=3.18264;SAP=5.18177;AB=0.204545;ABP=303.266;RUN=1;RPP=4.32391;RPPR=12.4476;RPL=44.0;RPR=37.0;EPP=19.7655;EPPR=28.6612;DPRA=0.0;ODDS=103.305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2215;Dels=0.0;FS=1.0755;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.14;QD=9.055;ReadPosRankSum=0.0055;SOR=0.833;ClippingRankSum=-0.352	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.111:94:51:1941:44:1663:-123.963,0.0,-148.971:44:46:94:50,44:1519,0,1651:1:.:1:.:.:.:-0.000209932	0/1:119.111:301:264:10186:37:1426:-46.7403,0.0,-834.641:37:12:301:264,37:706,0,10486:.:1:1:.:.:.:-0.008733
chr9	135777121	.	A	G	741.854	PASS	SOMATIC;NS=2;DP=195;DPB=195.0;AC=1;AN=3;AF=0.25;RO=159;AO=36;PRO=0.0;PAO=0.0;QR=6096;QA=1371;PQR=0.0;PQA=0.0;SRF=50;SRR=109;SAF=13;SAR=23;SRP=50.5505;SAP=9.04217;AB=0.241611;ABP=89.4174;RUN=1;RPP=37.7539;RPPR=116.104;RPL=30.0;RPR=6.0;EPP=3.25157;EPPR=4.6628;DPRA=3.23913;ODDS=29.6935;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.401;Dels=0.0;FS=1.639;HaplotypeScore=2.9636;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.512;QD=7.03;ReadPosRankSum=1.364;SOR=0.508	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:128.841:45:46:1739:0:0:0.0,-12.4698,-156.722:0:0:45:45,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:121.8075:149:113:4357:36:1371:-82.984,0.0,-351.678:36:24:149:112,36:38.0:0.245:2:1076,0,4451:.:1:1:.:.:1:-0.008733
chr9	135782221	.	T	C	2285.11	PASS	SOMATIC;NS=2;DP=334;DPB=334.0;AC=1;AN=3;AF=0.25;RO=246;AO=88;PRO=0.0;PAO=0.0;QR=9437;QA=3430;PQR=0.0;PQA=0.0;SRF=77;SRR=169;SAF=20;SAR=68;SRP=77.7231;SAP=59.8634;AB=0.349206;ABP=52.7818;RUN=1;RPP=7.84676;RPPR=48.7701;RPL=51.0;RPR=37.0;EPP=5.47788;EPPR=21.6885;DPRA=3.07317;ODDS=52.1478;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.87;Dels=0.0;FS=3.447;HaplotypeScore=4.8657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.073;QD=11.98;ReadPosRankSum=-0.014;SOR=0.969	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:81:82:3144:0:0:0.0,-22.2215,-283.057:0:0:81:80,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:129.501:251:164:6293:88:3430:-240.257,0.0,-497.817:87:35:251:159,84:38.0:0.345:2:3035,0,6305:.:1:1:.:.:1:-0.008733
chr9	135786112	.	T	C	1617.8	PASS	SOMATIC;NS=2;DP=238;DPB=238.0;AC=1;AN=3;AF=0.25;RO=171;AO=67;PRO=0.0;PAO=0.0;QR=6501;QA=2486;PQR=0.0;PQA=0.0;SRF=55;SRR=116;SAF=22;SAR=45;SRP=50.262;SAP=20.1552;AB=0.372881;ABP=27.8534;RUN=1;RPP=57.4916;RPPR=132.549;RPL=54.0;RPR=13.0;EPP=8.4876;EPPR=12.2676;DPRA=0.0;ODDS=37.1307;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.3731;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.182;Dels=0.0;FS=0.0;HaplotypeScore=1.9575;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.099;QD=12.53;ReadPosRankSum=0.344;SOR=0.78	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.384:60:60:2293:1:16:0.0,-15.2871,-205.304:1:2:60:59,1:.:0.017:0:.:.:.:0:.:.:0:-0.000209932	0/1:119.9975:176:111:4208:66:2470:-174.298,0.0,-330.665:66:37:176:109,64:37.0:0.365:2:2233,0,4116:.:1:1:.:.:1:-0.008733
chr9	135786904	.	A	G	2544.86	PASS	SOMATIC;NS=2;DP=404;DPB=404.0;AC=1;AN=3;AF=0.25;RO=297;AO=106;PRO=0.0;PAO=0.0;QR=11385;QA=3809;PQR=0.0;PQA=0.0;SRF=103;SRR=194;SAF=42;SAR=64;SRP=63.5556;SAP=12.9253;AB=0.350993;ABP=61.2518;RUN=1;RPP=4.32138;RPPR=11.9667;RPL=57.0;RPR=49.0;EPP=5.96022;EPPR=5.6497;DPRA=2.96078;ODDS=64.6219;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=0.986532;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.601;Dels=0.0;FS=1.554;HaplotypeScore=8.7452;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.068;QD=11.1;ReadPosRankSum=-1.306;SOR=0.523	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:98:102:3937:0:0:0.0,-27.639,-354.356:0:0:98:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000209932	0/1:129.501:299:195:7448:106:3809:-261.108,0.0,-588.518:105:35:298:185,101:35.0:0.354:2:3346,0,7394:.:1:1:.:.:1:-0.008733
chr9	135918481	.	G	T	1646.795	REJECT	NS=2;DP=413;DPB=467.0;AC=2;AN=4;AF=0.5;RO=378;AO=89;PRO=0.0;PAO=0.0;QR=14501;QA=3344;PQR=0.0;PQA=0.0;SRF=196;SRR=182;SAF=54;SAR=35;SRP=4.13625;SAP=11.8182;AB=0.190578;ABP=391.369;RUN=1;RPP=3.22989;RPPR=3.0103;RPL=43.0;RPR=46.0;EPP=3.0347;EPPR=3.0103;DPRA=0.0;ODDS=109.791;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997354;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.982;Dels=0.0;FS=4.098;HaplotypeScore=8.9172;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1815;QD=8.465;ReadPosRankSum=-0.648;SOR=1.1015;ClippingRankSum=1.648	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4015:108:61:2279:47:1726:-126.132,0.0,-175.869:47:44:108:60,48:1642,0,2130:1:.:1:.:.:.:-0.000209932	0/1:119.4015:359:317:12222:42:1618:-48.2746,0.0,-1002.03:42:12:359:317,42:741,0,12636:.:1:1:.:.:.:-0.008733
chr9	139391636	.	G	A	8575.75	REJECT	NS=2;DP=331;DPB=378.0;AC=3;AN=4;AF=0.75;RO=82;AO=296;PRO=0.0;PAO=0.0;QR=3161;QA=11357;PQR=0.0;PQA=0.0;SRF=39;SRR=43;SAF=133;SAR=163;SRP=3.434;SAP=9.61275;AB=0.711268;ABP=113.113;RUN=1;RPP=3.12768;RPPR=3.434;RPL=150.0;RPR=146.0;EPP=6.56095;EPPR=3.96363;DPRA=0.0;ODDS=59.6552;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993243;PAIREDR=0.987805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.831;Dels=0.0;FS=1.4725;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.471;QD=28.505;ReadPosRankSum=-0.111;SOR=0.8375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.193:93:0:0:94:3637:-327.395,-25.482,0.0:93:100:93:0,92:3941,276,0:1:.:1:.:.:.:-0.000209932	0/1:124.193:284:82:3161:202:7720:-617.481,0.0,-207.413:202:71:284:82,202:7800,0,2691:.:1:1:.:.:.:-0.008733
chr9	139397707	.	G	A	6805.73	REJECT	NS=2;DP=294;DPB=332.0;AC=3;AN=4;AF=0.75;RO=91;AO=241;PRO=0.0;PAO=0.0;QR=3457;QA=9066;PQR=0.0;PQA=0.0;SRF=47;SRR=44;SAF=105;SAR=136;SRP=3.22506;SAP=11.6692;AB=0.649805;ABP=53.1063;RUN=1;RPP=5.03761;RPPR=3.03416;RPL=128.0;RPR=113.0;EPP=5.03761;EPPR=4.17955;DPRA=0.0;ODDS=44.9661;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991701;PAIREDR=0.978022;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.505;Dels=0.0;FS=4.756;HaplotypeScore=5.904;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.622;QD=27.265;ReadPosRankSum=1.526;SOR=0.9965	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.9365:73:1:14:74:2788:-249.796,-19.0611,0.0:73:99:73:0,72:2836,216,0:1:.:1:.:.:.:-0.000209932	0/1:118.9365:256:90:3443:167:6278:-495.144,0.0,-240.147:167:65:256:89,167:6260,0,3057:.:1:1:.:.:.:-0.675948
chr9	139400299	.	C	A	1215.63	REJECT	NS=2;DP=250;DPB=289.0;AC=2;AN=4;AF=0.5;RO=228;AO=61;PRO=0.0;PAO=0.0;QR=8597;QA=2302;PQR=0.0;PQA=0.0;SRF=83;SRR=145;SAF=19;SAR=42;SRP=39.6206;SAP=21.8416;AB=0.211073;ABP=212.561;RUN=1;RPP=4.7546;RPPR=21.4488;RPL=27.0;RPR=34.0;EPP=3.33068;EPPR=3.0484;DPRA=0.0;ODDS=35.1214;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.02;Dels=0.0;FS=0.902;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1985;QD=9.41;ReadPosRankSum=0.9755;SOR=0.861;ClippingRankSum=-2.273	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:38:1418:39:1479:-112.311,0.0,-106.819:38:51:76:37,38:1345,0,1286:1:.:1:.:.:.:-0.000209932	0/1:118.6335:212:190:7179:22:823:-16.632,0.0,-588.427:22:10:212:190,22:296,0,7416:.:1:1:.:.:.:-0.675948
chr9	139402663	.	T	C	7479.83	REJECT	NS=2;DP=330;DPB=382.0;AC=3;AN=4;AF=0.75;RO=104;AO=277;PRO=0.0;PAO=0.0;QR=3961;QA=10330;PQR=0.0;PQA=0.0;SRF=63;SRR=41;SAF=156;SAR=121;SRP=13.116;SAP=12.6134;AB=0.62724;ABP=42.2447;RUN=1;RPP=3.95885;RPPR=7.10269;RPL=133.0;RPR=144.0;EPP=4.77413;EPPR=4.34659;DPRA=0.0;ODDS=64.5014;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.277;Dels=0.0;FS=1.726;HaplotypeScore=4.9233;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.081;QD=26.735;ReadPosRankSum=-0.538;SOR=0.764	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3783:-340.471,-27.5866,0.0:100:100:100:0,99:4075,297,0:1:.:1:.:.:.:-0.000209932	0/1:129.501:279:104:3961:175:6547:-513.382,0.0,-280.77:175:63:279:104,175:6520,0,3611:.:1:1:.:.:.:-0.675948
chr9	139405261	.	C	T	720.244	REJECT	NS=1;DP=67;DPB=67.0;AC=1;AN=4;AF=0.5;RO=39;AO=28;PRO=0.0;PAO=0.0;QR=1534;QA=1060;PQR=0.0;PQA=0.0;SRF=16;SRR=23;SAF=13;SAR=15;SRP=5.73856;SAP=3.32051;AB=0.41791;ABP=6.93191;RUN=1;RPP=5.80219;RPPR=19.1015;RPL=17.0;RPR=11.0;EPP=7.97367;EPPR=3.51141;DPRA=0.0;ODDS=165.842;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.948718;technology.ILLUMINA=1.0;BaseQRankSum=0.426;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.578;QD=13.61;ReadPosRankSum=0.146;SOR=0.504;ClippingRankSum=-2.536	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:39:1534:28:1060:-77.2876,0.0,-119.983:28:42:67:39,28:940,0,1441:1:.:1:.:.:.:-0.000209932	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.675948
chr9	139407452	.	C	T	2231.525	REJECT	NS=2;DP=184;DPB=211.0;AC=2;AN=4;AF=0.5;RO=107;AO=101;PRO=0.0;PAO=0.0;QR=3655;QA=3366;PQR=0.0;PQA=0.0;SRF=75;SRR=32;SAF=69;SAR=32;SRP=40.5342;SAP=32.4434;AB=0.478673;ABP=3.8439;RUN=1;RPP=77.8508;RPPR=73.6542;RPL=21.0;RPR=80.0;EPP=3.0318;EPPR=5.46589;DPRA=0.0;ODDS=124.33;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.802;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2175;Dels=0.0;FS=0.3385;HaplotypeScore=37.5794;MLEAC=1;MLEAF=0.5;MQ=59.945;MQRankSum=0.395;QD=15.385;ReadPosRankSum=0.0925;SOR=0.674;ClippingRankSum=1.036	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.5515:49:24:800:28:930:-69.7386,0.0,-58.0375:26:54:49:21,25:815,0,633:1:.:1:.:.:.:-0.000209932	0/1:120.5515:158:83:2855:73:2436:-177.069,0.0,-215.167:73:47:156:83,73:2188,0,2643:.:1:1:.:.:.:-0.675948
chr9	139407932	.	A	G	7109.39	REJECT	NS=2;DP=387;DPB=450.0;AC=2;AN=4;AF=0.5;RO=205;AO=245;PRO=0.0;PAO=0.0;QR=7765;QA=9464;PQR=0.0;PQA=0.0;SRF=96;SRR=109;SAF=105;SAR=140;SRP=4.80044;SAP=13.8677;AB=0.544444;ABP=10.7311;RUN=1;RPP=5.57175;RPPR=3.10563;RPL=131.0;RPR=114.0;EPP=4.50817;EPPR=5.39362;DPRA=0.0;ODDS=405.209;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995918;PAIREDR=0.995122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5355;Dels=0.0;FS=2.5225;HaplotypeScore=4.8904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.423;QD=18.885;ReadPosRankSum=0.9805;SOR=0.8425;ClippingRankSum=0.547	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:65:2448:61:2348:-177.169,0.0,-186.174:58:47:122:62,56:1967,0,2091:1:.:1:.:.:.:-0.000209932	0/1:129.501:324:140:5317:184:7116:-552.303,0.0,-390.49:184:57:324:140,184:7029,0,4927:.:1:1:.:.:.:-0.675948
chr9	139410177	.	T	C	3126.27	REJECT	NS=2;DP=204;DPB=237.0;AC=2;AN=4;AF=0.5;RO=123;AO=114;PRO=0.0;PAO=0.0;QR=4620;QA=4349;PQR=0.0;PQA=0.0;SRF=29;SRR=94;SAF=26;SAR=88;SRP=77.5995;SAP=76.2308;AB=0.481013;ABP=3.75245;RUN=1;RPP=13.982;RPPR=29.8624;RPL=69.0;RPR=45.0;EPP=4.22937;EPPR=10.7958;DPRA=0.0;ODDS=166.48;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6835;Dels=0.0;FS=4.628;HaplotypeScore=4.8372;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.474;QD=16.31;ReadPosRankSum=0.278;SOR=0.642;ClippingRankSum=-1.243	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.091:64:39:1508:26:1003:-72.7061,0.0,-118.188:25:40:64:38,25:901,0,1420:1:.:1:.:.:.:-0.000209932	0/1:124.091:172:84:3112:88:3346:-254.48,0.0,-233.421:88:51:172:84,88:3257,0,2946:.:1:1:.:.:.:-0.675948
chr9	139410424	.	A	G	9366.705	REJECT	NS=2;DP=252;DPB=292.0;AC=4;AN=4;AF=1.0;RO=0;AO=292;PRO=0.0;PAO=0.0;QR=0;QA=11028;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=171;SAR=121;SRP=0.0;SAP=21.6017;AB=0.0;ABP=0.0;RUN=1;RPP=74.4309;RPPR=0.0;RPL=97.0;RPR=195.0;EPP=33.4704;EPPR=0.0;DPRA=0.0;ODDS=53.5157;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993151;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.605;SOR=1.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:79:2903:-261.358,-21.3665,0.0:79:100:79:0,79:3212,236,0:1:.:1:.:.:.:-0.000209932	1/1:129.501:212:0:0:213:8125:-730.879,-57.6482,0.0:212:100:212:0,212:9001,623,0:.:1:1:.:.:.:-0.675948
chr9	139411714	.	T	C	1441.32	REJECT	NS=1;DP=95;DPB=95.0;AC=1;AN=4;AF=0.5;RO=40;AO=54;PRO=0.0;PAO=0.0;QR=1544;QA=1965;PQR=0.0;PQA=0.0;SRF=23;SRR=17;SAF=33;SAR=21;SRP=4.96463;SAP=8.80089;AB=0.568421;ABP=6.87324;RUN=1;RPP=10.8919;RPPR=10.8276;RPL=20.0;RPR=34.0;EPP=13.3047;EPPR=8.43898;DPRA=0.0;ODDS=247.229;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.975;technology.ILLUMINA=1.0;BaseQRankSum=0.032;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3;QD=19.61;ReadPosRankSum=-0.466;SOR=0.958;ClippingRankSum=-0.253	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.294:93:40:1544:54:1965:-151.412,0.0,-113.576:53:57:93:39,53:1852,0,1341:1:.:1:.:.:.:-0.000209932	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.675948
chr9	139412197	.	G	A	4742.015	REJECT	NS=2;DP=296;DPB=344.0;AC=2;AN=4;AF=0.5;RO=171;AO=173;PRO=0.0;PAO=0.0;QR=6476;QA=6594;PQR=0.0;PQA=0.0;SRF=113;SRR=58;SAF=123;SAR=50;SRP=41.4238;SAP=69.8992;AB=0.502907;ABP=3.03555;RUN=1;RPP=30.7374;RPPR=36.0395;RPL=63.0;RPR=110.0;EPP=13.5664;EPPR=28.7251;DPRA=0.0;ODDS=295.07;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2475;Dels=0.0;FS=2.3505;HaplotypeScore=8.8924;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.021;QD=17.33;ReadPosRankSum=0.4295;SOR=0.9735;ClippingRankSum=-1.081	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:49:1877:46:1757:-132.409,0.0,-143.23:45:47:94:49,44:1516,0,1792:1:.:1:.:.:.:-0.000209932	0/1:129.501:249:122:4599:127:4837:-368.077,0.0,-346.275:127:51:249:122,127:4674,0,4402:.:1:1:.:.:.:-0.675948
chr9	139418260	.	A	G	6680.84	REJECT	NS=2;DP=391;DPB=453.0;AC=2;AN=4;AF=0.5;RO=211;AO=241;PRO=0.0;PAO=0.0;QR=8072;QA=9184;PQR=0.0;PQA=0.0;SRF=115;SRR=96;SAF=129;SAR=112;SRP=6.72547;SAP=5.61426;AB=0.532009;ABP=7.04166;RUN=1;RPP=6.263;RPPR=5.32585;RPL=130.0;RPR=111.0;EPP=14.0479;EPPR=6.72547;DPRA=0.0;ODDS=364.083;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8395;Dels=0.0;FS=2.6545;HaplotypeScore=5.8619;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.699;QD=19.745;ReadPosRankSum=1.2115;SOR=0.6015;ClippingRankSum=0.092	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.1205:120:56:2133:66:2547:-196.157,0.0,-158.91:65:54:120:53,65:2419,0,1724:1:.:1:.:.:.:-0.000209932	0/1:123.1205:330:155:5939:175:6637:-507.59,0.0,-444.835:175:53:330:155,175:6431,0,5644:.:1:1:.:.:.:-0.675948
chr10	3000970	.	T	C	14873.9	REJECT	NS=2;DP=399;DPB=455.0;AC=4;AN=4;AF=1.0;RO=3;AO=452;PRO=0.0;PAO=0.0;QR=119;QA=17226;PQR=0.0;PQA=0.0;SRF=1;SRR=2;SAF=244;SAR=208;SRP=3.73412;SAP=9.23647;AB=0.0;ABP=0.0;RUN=1;RPP=16.0007;RPPR=3.73412;RPL=252.0;RPR=200.0;EPP=4.93196;EPPR=9.52472;DPRA=0.0;ODDS=66.7112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997788;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.251;Dels=0.0;FS=0.0;HaplotypeScore=6.8322;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.194;QD=34.29;ReadPosRankSum=-0.581;SOR=0.56;ClippingRankSum=1.336	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:1:40:109:4129:-368.016,-26.1942,0.0:106:99:107:1,104:4268,270,0:1:.:1:.:.:.:-8.62764e-05	1/1:129.501:344:2:79:343:13097:-1170.82,-86.2915,0.0:342:99:344:2,342:14434,923,0:.:1:1:.:.:.:1.48551e-05
chr10	6014203	.	T	A	8609.48	REJECT	NS=2;DP=328;DPB=375.0;AC=2;AN=4;AF=0.5;RO=92;AO=283;PRO=0.0;PAO=0.0;QR=3560;QA=10890;PQR=0.0;PQA=0.0;SRF=51;SRR=41;SAF=163;SAR=120;SRP=5.3706;SAP=17.1978;AB=0.754667;ABP=214.257;RUN=1;RPP=50.8978;RPPR=21.515;RPL=102.0;RPR=181.0;EPP=48.5038;EPPR=7.63648;DPRA=0.0;ODDS=176.229;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992933;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1455;Dels=0.0;FS=0.873;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7045;QD=24.965;ReadPosRankSum=-0.887;SOR=0.8125;ClippingRankSum=0.759	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.403:90:48:1834:44:1668:-125.226,0.0,-140.164:43:48:90:46,43:1487,0,1583:1:.:1:.:.:.:-8.62764e-05	0/1:121.403:282:44:1726:239:9222:-752.841,0.0,-78.5744:238:84:282:43,238:9454,0,1050:.:1:1:.:.:.:1.48551e-05
chr10	6014272	.	C	G	9284.72	REJECT	NS=2;DP=378;DPB=435.0;AC=2;AN=4;AF=0.5;RO=119;AO=316;PRO=0.0;PAO=0.0;QR=4453;QA=11851;PQR=0.0;PQA=0.0;SRF=39;SRR=80;SAF=105;SAR=211;SRP=33.6846;SAP=80.2213;AB=0.726437;ABP=196.741;RUN=1;RPP=40.64;RPPR=7.11603;RPL=195.0;RPR=121.0;EPP=21.5915;EPPR=3.90444;DPRA=0.0;ODDS=277.328;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996835;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8995;Dels=0.0;FS=4.419;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3135;QD=23.35;ReadPosRankSum=-1.276;SOR=0.589;ClippingRankSum=0.876	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0515:111:57:2122:56:2107:-159.041,0.0,-160.377:55:50:111:55,54:1799,0,1927:1:.:1:.:.:.:-8.62764e-05	0/1:118.0515:321:62:2331:260:9744:-789.271,0.0,-122.525:260:81:321:61,260:9850,0,1593:.:1:1:.:.:.:1.48551e-05
chr10	8100647	.	C	T	1879.595	REJECT	NS=2;DP=397;DPB=453.0;AC=2;AN=4;AF=0.5;RO=351;AO=102;PRO=0.0;PAO=0.0;QR=13345;QA=3765;PQR=0.0;PQA=0.0;SRF=175;SRR=176;SAF=50;SAR=52;SRP=3.01649;SAP=3.09546;AB=0.225166;ABP=300.214;RUN=1;RPP=3.35092;RPPR=3.51141;RPL=49.0;RPR=53.0;EPP=11.5259;EPPR=5.24364;DPRA=0.0;ODDS=164.654;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994302;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0575;Dels=0.0;FS=0.0;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6925;QD=9.535;ReadPosRankSum=0.6975;SOR=0.737;ClippingRankSum=0.908	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:57:2119:53:1926:-143.59,0.0,-160.939:51:48:106:54,49:1691,0,1869:1:.:1:.:.:.:0.161248	0/1:129.501:342:294:11226:49:1839:-72.5543,0.0,-916.813:49:14:342:292,49:1028,0,11441:.:1:1:.:.:.:0.326849
chr10	19509564	.	G	A	5714.735000000001	REJECT	NS=2;DP=361;DPB=410.0;AC=2;AN=4;AF=0.5;RO=212;AO=198;PRO=0.0;PAO=0.0;QR=8117;QA=7705;PQR=0.0;PQA=0.0;SRF=98;SRR=114;SAF=96;SAR=102;SRP=5.63246;SAP=3.40511;AB=0.482927;ABP=4.04837;RUN=1;RPP=5.81786;RPPR=4.03458;RPL=91.0;RPR=107.0;EPP=24.2425;EPPR=21.0786;DPRA=0.0;ODDS=308.417;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.995283;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1195;Dels=0.0;FS=1.894;HaplotypeScore=6.9299;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2205;QD=17.155;ReadPosRankSum=0.107;SOR=0.772;ClippingRankSum=-0.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.591:95:50:1907:46:1784:-134.573,0.0,-145.638:45:48:95:49,45:1561,0,1667:1:.:1:.:.:.:-2.27739e-05	0/1:120.591:313:162:6210:152:5921:-447.888,0.0,-473.492:152:48:313:161,152:5718,0,5962:.:1:1:.:.:.:4.37935e-05
chr10	43595968	.	A	G	13662.3	REJECT	NS=2;DP=365;DPB=418.0;AC=4;AN=4;AF=1.0;RO=0;AO=417;PRO=0.0;PAO=0.0;QR=0;QA=15786;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=180;SAR=237;SRP=0.0;SAP=19.929;AB=0.0;ABP=0.0;RUN=1;RPP=3.26546;RPPR=0.0;RPL=212.0;RPR=205.0;EPP=11.7639;EPPR=0.0;DPRA=0.0;ODDS=69.1397;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997602;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.946;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.185;SOR=1.0315	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.5015:102:0:0:104:3921:-352.907,-28.1519,0.0:102:100:102:0,101:4005,303,0:1:.:1:.:.:.:-0.000266909	1/1:124.5015:313:0:0:313:11865:-1067.19,-84.7287,0.0:312:100:312:0,312:13220,924,0:.:1:1:.:.:.:-0.532731
chr10	43596179	.	G	A	1294.44	PASS	SOMATIC;NS=2;DP=202;DPB=202.0;AC=1;AN=3;AF=0.25;RO=148;AO=54;PRO=0.0;PAO=0.0;QR=5622;QA=1988;PQR=0.0;PQA=0.0;SRF=46;SRR=102;SAF=15;SAR=39;SRP=49.022;SAP=26.1727;AB=0.362416;ABP=27.5086;RUN=1;RPP=22.4731;RPPR=24.1968;RPL=38.0;RPR=16.0;EPP=3.0103;EPPR=10.1116;DPRA=2.81132;ODDS=34.103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.468;Dels=0.0;FS=2.334;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.993;QD=11.78;ReadPosRankSum=-1.226;SOR=0.979	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.853:52:53:2036:0:0:0.0,-14.3848,-183.456:0:0:52:52,0:.:0.0:0:.:.:.:0:.:.:0:-0.000266909	0/1:122.305:149:95:3586:54:1988:-138.535,0.0,-282.329:54:36:149:94,53:37.0:0.363:2:1784,0,3577:.:1:1:.:.:1:-0.532731
chr10	43610366	.	G	A	14289.7	REJECT	NS=2;DP=381;DPB=434.0;AC=4;AN=4;AF=1.0;RO=0;AO=434;PRO=0.0;PAO=0.0;QR=0;QA=16525;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=213;SAR=221;SRP=0.0;SAP=3.33052;AB=0.0;ABP=0.0;RUN=1;RPP=5.01166;RPPR=0.0;RPL=227.0;RPR=207.0;EPP=11.8363;EPPR=0.0;DPRA=0.0;ODDS=70.4926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997696;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.805;SOR=0.7435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:106:4086:-367.776,-28.7395,0.0:106:100:106:0,106:4343,319,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:328:0:0:328:12439:-1118.75,-88.7721,0.0:328:100:328:0,328:13796,957,0:.:1:1:.:.:.:-2.18352
chr10	43610455	.	T	C	13695.7	REJECT	NS=2;DP=361;DPB=406.0;AC=4;AN=4;AF=1.0;RO=0;AO=406;PRO=0.0;PAO=0.0;QR=0;QA=15475;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=170;SAR=236;SRP=0.0;SAP=26.3082;AB=0.0;ABP=0.0;RUN=1;RPP=16.3814;RPPR=0.0;RPL=228.0;RPR=178.0;EPP=4.7432;EPPR=0.0;DPRA=0.0;ODDS=60.4914;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997537;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8291;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.175;SOR=1.023	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:90:3418:-307.711,-24.396,0.0:88:100:88:0,87:3655,261,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:316:0:0:316:12057:-1084.51,-85.5823,0.0:316:100:316:0,316:13578,948,0:.:1:1:.:.:.:-2.18352
chr10	43610558	.	C	T	11529.099999999999	REJECT	NS=2;DP=302;DPB=343.0;AC=4;AN=4;AF=1.0;RO=0;AO=343;PRO=0.0;PAO=0.0;QR=0;QA=13183;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=179;SAR=164;SRP=0.0;SAP=4.43474;AB=0.0;ABP=0.0;RUN=1;RPP=9.90457;RPPR=0.0;RPL=188.0;RPR=155.0;EPP=3.06728;EPPR=0.0;DPRA=0.0;ODDS=54.9024;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7286;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.17;SOR=0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.1775:81:0:0:81:3119:-280.831,-21.9687,0.0:81:100:81:0,82:3434,247,0:1:.:1:.:.:.:-0.000266909	1/1:128.1775:262:0:0:262:10064:-905.24,-70.9499,0.0:262:100:262:0,262:11275,780,0:.:1:1:.:.:.:-2.18352
chr10	43611708	.	A	G	15950.5	REJECT	NS=2;DP=420;DPB=480.0;AC=4;AN=4;AF=1.0;RO=0;AO=479;PRO=0.0;PAO=0.0;QR=0;QA=18373;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=246;SRP=0.0;SAP=3.77644;AB=0.0;ABP=0.0;RUN=1;RPP=6.31511;RPPR=0.0;RPL=226.0;RPR=253.0;EPP=10.6309;EPPR=0.0;DPRA=0.0;ODDS=77.9498;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9875;MQMR=0.0;PAIRED=0.995825;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7173;MLEAC=2;MLEAF=1.0;MQ=59.99;QD=31.565;SOR=0.7825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.917:117:0:0:118:4538:-408.403,-31.9781,0.0:117:100:117:0,116:4669,348,0:1:.:1:.:.:.:-0.000266909	1/1:123.917:360:0:0:361:13835:-1244.3,-97.7382,0.0:360:100:360:0,360:15457,1072,0:.:1:1:.:.:.:-2.18352
chr10	43611865	.	T	C	14664.75	REJECT	NS=2;DP=388;DPB=453.0;AC=4;AN=4;AF=1.0;RO=0;AO=453;PRO=0.0;PAO=0.0;QR=0;QA=17323;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=240;SAR=213;SRP=0.0;SAP=6.50479;AB=0.0;ABP=0.0;RUN=1;RPP=12.7172;RPPR=0.0;RPL=249.0;RPR=204.0;EPP=11.8736;EPPR=0.0;DPRA=0.0;ODDS=83.8629;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8797;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.23;SOR=0.8305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:129:4907:-441.166,-34.5461,0.0:127:100:127:0,125:4939,375,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:324:0:0:324:12416:-1116.69,-87.7089,0.0:324:100:324:0,324:13844,957,0:.:1:1:.:.:.:-2.18352
chr10	43613843	.	G	T	3839.52	REJECT	NS=1;DP=114;DPB=114.0;AC=2;AN=4;AF=1.0;RO=0;AO=114;PRO=0.0;PAO=0.0;QR=0;QA=4339;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=49;SAR=65;SRP=0.0;SAP=7.88659;AB=0.0;ABP=0.0;RUN=1;RPP=4.9151;RPPR=0.0;RPL=52.0;RPR=62.0;EPP=27.6965;EPPR=0.0;DPRA=0.0;ODDS=75.6992;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.86;SOR=1.015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.833:113:0:0:114:4339:-390.497,-30.8758,0.0:113:100:113:0,112:4510,336,0:1:.:1:.:.:.:-0.000266909	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-2.18352
chr10	43615505	.	G	A	857.3665	REJECT	NS=2;DP=215;DPB=244.0;AC=2;AN=4;AF=0.5;RO=195;AO=49;PRO=0.0;PAO=0.0;QR=7463;QA=1865;PQR=0.0;PQA=0.0;SRF=126;SRR=69;SAF=30;SAR=19;SRP=39.1904;SAP=8.37251;AB=0.20082;ABP=192.712;RUN=1;RPP=26.4533;RPPR=72.5086;RPL=13.0;RPR=36.0;EPP=3.40914;EPPR=5.51585;DPRA=0.0;ODDS=84.9378;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994872;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0785;Dels=0.0;FS=2.331;HaplotypeScore=4.8376;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.159;QD=8.275;ReadPosRankSum=0.83;SOR=0.5785;ClippingRankSum=-1.618	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:57:34:1297:23:868:-62.7379,0.0,-101.388:23:40:57:34,23:806,0,1249:1:.:1:.:.:.:-0.000266909	0/1:129.501:186:161:6166:26:997:-39.0501,0.0,-504.074:26:14:186:160,26:567,0,6297:.:1:1:.:.:.:.
chr10	43622217	.	T	C	10035.485	REJECT	NS=2;DP=263;DPB=307.0;AC=4;AN=4;AF=1.0;RO=0;AO=307;PRO=0.0;PAO=0.0;QR=0;QA=11888;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=127;SAR=180;SRP=0.0;SAP=22.8789;AB=0.0;ABP=0.0;RUN=1;RPP=47.1541;RPPR=0.0;RPL=193.0;RPR=114.0;EPP=21.4077;EPPR=0.0;DPRA=0.0;ODDS=57.9967;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990228;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.16;SOR=1.0805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.569:85:0:0:86:3331:-299.879,-23.3126,0.0:85:100:85:0,84:3533,252,0:1:.:1:.:.:.:-0.000266909	1/1:123.569:220:0:0:221:8557:-769.749,-59.8707,0.0:220:100:220:0,220:9526,656,0:.:1:1:.:.:.:-0.00804187
chr10	45006398	.	G	A	5575.855	REJECT	NS=2;DP=344;DPB=389.0;AC=2;AN=4;AF=0.5;RO=194;AO=193;PRO=0.0;PAO=0.0;QR=7540;QA=7503;PQR=0.0;PQA=0.0;SRF=105;SRR=89;SAF=101;SAR=92;SRP=5.87575;SAP=3.92164;AB=0.496144;ABP=3.06054;RUN=1;RPP=16.793;RPPR=40.6641;RPL=79.0;RPR=114.0;EPP=12.4725;EPPR=3.72666;DPRA=0.0;ODDS=284.103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994845;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.038;Dels=0.0;FS=0.692;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.69;QD=18.06;ReadPosRankSum=-0.5975;SOR=0.622;ClippingRankSum=-0.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:43:1656:45:1749:-133.595,0.0,-125.218:45:51:88:43,46:1613,0,1553:1:.:1:.:.:.:-0.000266909	0/1:129.501:299:151:5884:148:5754:-436.539,0.0,-448.224:148:49:298:150,148:5563,0,5669:.:1:1:.:.:.:-0.00804187
chr10	45006477	.	C	G	5048.375	REJECT	NS=2;DP=332;DPB=376.0;AC=2;AN=4;AF=0.5;RO=193;AO=183;PRO=0.0;PAO=0.0;QR=7446;QA=6977;PQR=0.0;PQA=0.0;SRF=74;SRR=119;SAF=68;SAR=115;SRP=25.7939;SAP=29.2222;AB=0.486702;ABP=3.58782;RUN=1;RPP=21.0584;RPPR=23.8137;RPL=111.0;RPR=72.0;EPP=27.0389;EPPR=21.9235;DPRA=0.0;ODDS=271.536;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983607;PAIREDR=0.994819;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1375;Dels=0.0;FS=0.462;HaplotypeScore=5.815;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.021;QD=17.13;ReadPosRankSum=-0.2735;SOR=0.7165;ClippingRankSum=2.031	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.404:85:42:1596:44:1664:-126.513,0.0,-120.377:43:51:85:41,43:1496,0,1399:1:.:1:.:.:.:-0.000266909	0/1:117.404:289:151:5850:139:5313:-399.334,0.0,-447.653:138:48:289:151,138:4995,0,5695:.:1:1:.:.:.:-0.00804187
chr10	52568616	.	T	C	6261.41	REJECT	NS=2;DP=173;DPB=201.0;AC=4;AN=4;AF=1.0;RO=0;AO=201;PRO=0.0;PAO=0.0;QR=0;QA=7561;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=162;SAR=39;SRP=0.0;SAP=166.454;AB=0.0;ABP=0.0;RUN=1;RPP=145.885;RPPR=0.0;RPL=43.0;RPR=158.0;EPP=21.1707;EPPR=0.0;DPRA=0.0;ODDS=39.2195;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985075;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.56;SOR=3.1055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.1905:55:0:0:56:2045:-184.219,-15.1578,0.0:55:100:55:0,55:2233,165,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:145:0:0:145:5516:-496.318,-39.2603,0.0:145:100:145:0,145:6127,424,0:.:1:1:.:.:.:-0.00804187
chr10	55511027	.	A	G	3993.3	REJECT	NS=1;DP=118;DPB=118.0;AC=2;AN=4;AF=1.0;RO=0;AO=118;PRO=0.0;PAO=0.0;QR=0;QA=4502;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=59;SAR=59;SRP=0.0;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=3.08391;RPPR=0.0;RPL=60.0;RPR=58.0;EPP=26.8597;EPPR=0.0;DPRA=0.0;ODDS=78.191;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.983051;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.61;SOR=0.693	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.1065:118:0:0:118:4502:-405.145,-31.9579,0.0:118:100:118:0,118:4720,354,0:1:.:1:.:.:.:-0.000266909	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00804187
chr10	60025964	.	TGA	T	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:37,0:37:0.108108,0.0:60.0,0.0:38.4033,0.0:0.0,0.0:0,0:0,0:9,28,0,0:0:0:37:.:.:.:.:0:.:-0.000266909	0/1:82,39:121:0.158537,0.025641:60.0,60.0:37.8314,38.5692:0.002574,0.0:26,11:74,11:29,53,15,24:39:32:121:.:.:.:.:1:.:-0.00804187
chr10	63760087	.	C	T	654.113	REJECT	NS=2;DP=209;DPB=252.1;AC=2;AN=2;AF=0.0;RO=126;AO=8;PRO=41.3333;PAO=0.0;QR=4612;QA=100;PQR=1442.33;PQA=0.0;SRF=44;SRR=82;SAF=0;SAR=8;SRP=27.8961;SAP=20.3821;AB=0.0382775;ABP=390.021;RUN=1;RPP=3.0103;RPPR=30.5846;RPL=4.0;RPR=4.0;EPP=3.0103;EPPR=3.0103;DPRA=0.0;ODDS=41.6352;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=59.9524;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:47:26:946:4:44:-19.7787,-38.3255,-271.57:4:9:45:.:.:1:.:.:.:-0.000266909	./1:160.002:162:100:3666:4:56:-52.047,-114.73,-844.075:4:3:148:.:.:1:.:.:.:-0.00804187
chr10	63760087	.	C	CT	654.113	REJECT	NS=2;DP=209;DPB=252.1;AC=2;AN=2;AF=0.0;RO=126;AO=22;PRO=41.3333;PAO=22.3333;QR=4612;QA=637;PQR=1442.33;PQA=803.333;SRF=44;SRR=82;SAF=8;SAR=14;SRP=27.8961;SAP=6.56362;AB=0.105263;ABP=285.873;RUN=1;RPP=12.8806;RPPR=30.5846;RPL=16.0;RPR=6.0;EPP=3.40511;EPPR=3.0103;DPRA=0.0;ODDS=41.6352;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=59.9524;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:47:26:946:5:116:-19.7787,-16.117,-106.568:5:11:45:.:.:1:.:.:.:-0.000266909	./1:160.002:162:100:3666:17:521:-52.047,-37.9584,-380.631:17:11:148:.:.:1:.:.:.:-0.00804187
chr10	63760087	.	CT	C	509.92150000000004	REJECT	NS=2;DP=209;DPB=252.1;AC=2;AN=4;AF=0.5;RO=126;AO=37;PRO=41.3333;PAO=23.3333;QR=4612;QA=1255;PQR=1442.33;PQA=811.333;SRF=44;SRR=82;SAF=12;SAR=25;SRP=27.8961;SAP=12.9286;AB=0.177033;ABP=192.365;RUN=1;RPP=7.76406;RPPR=30.5846;RPL=23.0;RPR=14.0;EPP=3.06899;EPPR=3.0103;DPRA=0.0;ODDS=41.6352;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=59.9524;PAIRED=0.972973;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.4105;FS=5.498;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=-0.4705;QD=1.665;RPA=13,12;RU=T;ReadPosRankSum=-0.472;SOR=0.837;STR;ClippingRankSum=-0.869	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:45:26:946:10:343:-19.7787,0.0,-89.3414:10:23:44:33,11:146,0,655:1:.:1:.:.:.:-0.000266909	0/1:129.501:195:100:3666:27:912:-52.047,0.0,-351.733:34:20:167:145,41:403,0,2794:.:1:1:.:.:.:-0.00804187
chr10	64506292	.	G	T	1603.975	REJECT	NS=2;DP=376;DPB=427.0;AC=2;AN=4;AF=0.5;RO=334;AO=93;PRO=0.0;PAO=0.0;QR=12895;QA=3517;PQR=0.0;PQA=0.0;SRF=163;SRR=171;SAF=42;SAR=51;SRP=3.42639;SAP=4.90158;AB=0.217799;ABP=298.376;RUN=1;RPP=11.4393;RPPR=3.42639;RPL=56.0;RPR=37.0;EPP=6.95631;EPPR=5.11676;DPRA=0.0;ODDS=193.47;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997006;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1805;Dels=0.0;FS=2.169;HaplotypeScore=3.9277;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5915;QD=8.31;ReadPosRankSum=1.194;SOR=0.722;ClippingRankSum=1.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:59:2254:42:1587:-115.496,0.0,-175.514:41:42:99:56,41:1298,0,2035:1:.:1:.:.:.:-0.000266909	0/1:129.501:326:275:10641:51:1930:-85.2924,0.0,-868.794:51:16:326:275,51:1180,0,10939:.:1:1:.:.:.:-0.00804187
chr10	72010700	.	C	T	5760.74	REJECT	NS=2;DP=412;DPB=463.0;AC=2;AN=4;AF=0.5;RO=250;AO=212;PRO=0.0;PAO=0.0;QR=9347;QA=7875;PQR=0.0;PQA=0.0;SRF=122;SRR=128;SAF=108;SAR=104;SRP=3.32299;SAP=3.17418;AB=0.457883;ABP=10.1438;RUN=1;RPP=7.10742;RPPR=4.71273;RPL=116.0;RPR=96.0;EPP=11.0407;EPPR=3.32299;DPRA=0.0;ODDS=234.398;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.707;Dels=0.0;FS=1.363;HaplotypeScore=5.8212;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0465;QD=14.51;ReadPosRankSum=1.463;SOR=0.568;ClippingRankSum=0.501	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:60:2267:40:1438:-102.367,0.0,-176.976:39:40:99:59,39:1217,0,2121:1:.:1:.:.:.:-0.000266909	0/1:129.501:361:190:7080:172:6437:-481.02,0.0,-538.794:172:48:361:189,172:6124,0,6729:.:1:1:.:.:.:-0.00804187
chr10	79527618	.	G	A	1966.1	PASS	SOMATIC;NS=2;DP=280;DPB=280.0;AC=1;AN=3;AF=0.25;RO=205;AO=75;PRO=0.0;PAO=0.0;QR=8020;QA=2882;PQR=0.0;PQA=0.0;SRF=135;SRR=70;SAF=48;SAR=27;SRP=47.7638;SAP=15.7786;AB=0.376884;ABP=29.2098;RUN=1;RPP=24.117;RPPR=24.4602;RPL=24.0;RPR=51.0;EPP=6.51361;EPPR=22.5959;DPRA=2.45679;ODDS=51.5493;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986667;PAIREDR=0.990244;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.109;Dels=0.0;FS=0.565;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.263;QD=13.04;ReadPosRankSum=-1.45;SOR=0.613	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:147.539:79:81:3177:0:0:0.0,-21.9616,-286.023:0:0:79:77,0:.:0.0:0:.:.:.:0:.:.:0:-0.000266909	0/1:123.2695:198:124:4843:75:2882:-205.348,0.0,-381.758:74:37:198:122,72:38.0:0.372:2:2611,0,4839:.:1:1:.:.:1:-0.00804187
chr10	88635779	.	C	A	1542.51	REJECT	NS=2;DP=310;DPB=360.0;AC=2;AN=4;AF=0.5;RO=279;AO=81;PRO=0.0;PAO=0.0;QR=10631;QA=3054;PQR=0.0;PQA=0.0;SRF=156;SRR=123;SAF=48;SAR=33;SRP=11.486;SAP=9.04217;AB=0.225;ABP=239.484;RUN=1;RPP=7.5409;RPPR=24.8729;RPL=34.0;RPR=47.0;EPP=3.68051;EPPR=35.8937;DPRA=0.0;ODDS=57.2549;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=45.4691;MQMR=58.6774;PAIRED=0.987654;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.618;Dels=0.0;FS=4.4085;HaplotypeScore=3.8991;MLEAC=1;MLEAF=0.5;MQ=55.83;MQRankSum=-5.0985;QD=9.945;ReadPosRankSum=1.1355;SOR=0.8805;ClippingRankSum=0.896	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:47:1804:51:1929:-134.911,0.0,-133.519:49:52:95:45,48:1704,0,1459:1:.:1:.:.:.:-0.000266909	0/1:129.501:261:232:8827:30:1125:-25.9169,0.0,-720.773:30:11:261:231,30:517,0,9009:.:1:1:.:.:.:-0.00804187
chr10	88683122	.	T	C	1436.345	REJECT	NS=2;DP=282;DPB=330.0;AC=2;AN=4;AF=0.5;RO=254;AO=75;PRO=0.0;PAO=0.0;QR=9888;QA=2865;PQR=0.0;PQA=0.0;SRF=158;SRR=96;SAF=48;SAR=27;SRP=35.8731;SAP=15.7786;AB=0.227273;ABP=216.209;RUN=1;RPP=9.52472;RPPR=29.8203;RPL=30.0;RPR=45.0;EPP=18.3264;EPPR=29.8203;DPRA=0.0;ODDS=127.241;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984252;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.102;Dels=0.0;FS=1.2095;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.067;QD=8.575;ReadPosRankSum=1.827;SOR=0.629;ClippingRankSum=-0.421	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:54:2088:41:1528:-111.809,0.0,-162.216:40:43:93:52,39:1303,0,1940:1:.:1:.:.:.:-0.000266909	0/1:129.501:234:200:7800:34:1337:-56.8545,0.0,-638.234:34:15:233:199,34:798,0,8008:.:1:1:.:.:.:-0.00804187
chr10	89523233	.	G	T	1872.15	REJECT	NS=1;DP=63;DPB=63.0;AC=2;AN=4;AF=1.0;RO=0;AO=63;PRO=0.0;PAO=0.0;QR=0;QA=2336;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=1;SAR=62;SRP=0.0;SAP=131.265;AB=0.0;ABP=0.0;RUN=1;RPP=24.5527;RPPR=0.0;RPL=44.0;RPR=19.0;EPP=21.2438;EPPR=0.0;DPRA=0.0;ODDS=43.8838;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.984127;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.57;SOR=6.901	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.772:63:0:0:63:2336:-210.393,-17.0585,0.0:63:100:63:0,63:2600,188,0:1:.:1:.:.:.:-0.000266909	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00804187
chr10	89525860	.	C	T	3981.435	REJECT	NS=2;DP=270;DPB=307.0;AC=2;AN=4;AF=0.5;RO=158;AO=149;PRO=0.0;PAO=0.0;QR=5972;QA=5626;PQR=0.0;PQA=0.0;SRF=127;SRR=31;SAF=111;SAR=38;SRP=129.67;SAP=80.6732;AB=0.485342;ABP=3.58323;RUN=1;RPP=32.5219;RPPR=37.369;RPL=52.0;RPR=97.0;EPP=3.02487;EPPR=3.2302;DPRA=0.0;ODDS=210.57;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993289;PAIREDR=0.987342;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.784;Dels=0.0;FS=5.9175;HaplotypeScore=11.6922;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2835;QD=17.985;ReadPosRankSum=0.2135;SOR=0.351;ClippingRankSum=0.531	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:34:1289:39:1505:-115.735,0.0,-96.2769:39:53:72:33,39:1437,0,1141:1:.:1:.:.:.:-0.000266909	0/1:129.501:234:124:4683:110:4121:-307.362,0.0,-357.906:110:47:234:124,110:3929,0,4523:.:1:1:.:.:.:-0.00804187
chr10	89534244	.	G	T	5561.450000000001	REJECT	NS=2;DP=372;DPB=429.0;AC=2;AN=4;AF=0.5;RO=226;AO=202;PRO=0.0;PAO=0.0;QR=8644;QA=7679;PQR=0.0;PQA=0.0;SRF=97;SRR=129;SAF=101;SAR=101;SRP=12.8492;SAP=3.0103;AB=0.470862;ABP=6.17387;RUN=1;RPP=7.31025;RPPR=7.66071;RPL=111.0;RPR=91.0;EPP=4.08529;EPPR=12.8492;DPRA=0.0;ODDS=333.442;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1825;Dels=0.0;FS=6.655;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.77;QD=16.38;ReadPosRankSum=0.6165;SOR=0.6665;ClippingRankSum=-1.314	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:59:2271:51:1942:-144.973,0.0,-174.598:50:45:109:59,49:1723,0,2039:1:.:1:.:.:.:-0.000266909	0/1:129.501:317:167:6373:151:5737:-429.931,0.0,-487.099:151:47:317:165,151:5468,0,6057:.:1:1:.:.:.:-0.00804187
chr10	96798749	.	T	C	2116.5950000000003	REJECT	NS=2;DP=380;DPB=432.0;AC=2;AN=4;AF=0.5;RO=332;AO=100;PRO=0.0;PAO=0.0;QR=12859;QA=3857;PQR=0.0;PQA=0.0;SRF=155;SRR=177;SAF=50;SAR=50;SRP=6.17594;SAP=3.0103;AB=0.231481;ABP=273.56;RUN=1;RPP=7.26639;RPPR=8.89682;RPL=43.0;RPR=57.0;EPP=13.5202;EPPR=26.5564;DPRA=0.0;ODDS=134.825;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99;PAIREDR=0.990964;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6805;Dels=0.0;FS=10.319;HaplotypeScore=9.6786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3945;QD=11.535;ReadPosRankSum=1.143;SOR=0.926;ClippingRankSum=-1.604	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1335:99:43:1651:57:2188:-169.84,0.0,-121.514:56:56:99:43,55:2032,0,1451:1:.:1:.:.:.:-0.000266909	0/1:118.1335:330:289:11208:43:1669:-60.1723,0.0,-918.132:43:13:330:286,43:890,0,11431:.:1:1:.:.:.:-0.00804187
chr10	96827030	.	C	T	1319.92	REJECT	NS=1;DP=93;DPB=93.0;AC=1;AN=4;AF=0.5;RO=46;AO=47;PRO=0.0;PAO=0.0;QR=1760;QA=1806;PQR=0.0;PQA=0.0;SRF=28;SRR=18;SAF=27;SAR=20;SRP=7.73089;SAP=5.27418;AB=0.505376;ABP=3.03365;RUN=1;RPP=4.16534;RPPR=18.305;RPL=21.0;RPR=26.0;EPP=5.27418;EPPR=4.70971;DPRA=0.0;ODDS=290.762;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.8696;PAIRED=1.0;PAIREDR=0.978261;technology.ILLUMINA=1.0;BaseQRankSum=-0.833;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=-0.324;QD=16.18;ReadPosRankSum=1.194;SOR=0.659;ClippingRankSum=0.316	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.5345:91:46:1760:47:1806:-137.359,0.0,-133.239:45:50:91:45,44:1468,0,1594:1:.:1:.:.:.:-0.000266909	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00804187
chr10	101620771	.	C	G	5938.645	REJECT	NS=2;DP=379;DPB=436.0;AC=2;AN=4;AF=0.5;RO=219;AO=217;PRO=0.0;PAO=0.0;QR=8272;QA=8232;PQR=0.0;PQA=0.0;SRF=114;SRR=105;SAF=117;SAR=100;SRP=3.81345;SAP=5.90226;AB=0.497706;ABP=3.03022;RUN=1;RPP=3.26047;RPPR=13.8082;RPL=106.0;RPR=111.0;EPP=8.30389;EPPR=3.02022;DPRA=0.0;ODDS=352.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981567;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.04;Dels=0.0;FS=2.3685;HaplotypeScore=10.6418;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.529;QD=17.065;ReadPosRankSum=0.825;SOR=0.724;ClippingRankSum=-0.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:55:2040:56:2129:-161.556,0.0,-153.544:54:50:109:54,53:1818,0,1874:1:.:1:.:.:.:-0.000266909	0/1:129.501:324:164:6232:161:6103:-460.938,0.0,-472.534:160:49:324:164,159:5750,0,6003:.:1:1:.:.:.:-0.00804187
chr10	104264107	.	C	T	7224.865	REJECT	NS=2;DP=331;DPB=378.0;AC=3;AN=4;AF=0.75;RO=102;AO=276;PRO=0.0;PAO=0.0;QR=3842;QA=9958;PQR=0.0;PQA=0.0;SRF=34;SRR=68;SAF=106;SAR=170;SRP=27.6203;SAP=35.2362;AB=0.644599;ABP=55.1332;RUN=1;RPP=81.6868;RPPR=24.8102;RPL=188.0;RPR=88.0;EPP=6.15736;EPPR=8.46027;DPRA=0.0;ODDS=57.6304;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985507;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.668;Dels=0.0;FS=2.1935;HaplotypeScore=9.8366;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.278;QD=29.265;ReadPosRankSum=0.355;SOR=0.9105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:91:3257:-293.183,-24.6026,0.0:90:100:90:0,90:3488,268,0:1:.:1:.:.:.:-0.000266909	0/1:129.501:286:102:3842:185:6701:-525.118,0.0,-267.988:184:64:286:102,183:6469,0,3455:.:1:1:.:.:.:-0.00804187
chr10	104378750	.	G	A	1195.38	PASS	SOMATIC;NS=2;DP=223;DPB=223.0;AC=1;AN=3;AF=0.25;RO=170;AO=51;PRO=0.0;PAO=0.0;QR=6035;QA=1958;PQR=0.0;PQA=0.0;SRF=106;SRR=64;SAF=31;SAR=20;SRP=25.5425;SAP=8.16222;AB=0.310976;ABP=53.9075;RUN=1;RPP=67.7713;RPPR=72.9573;RPL=6.0;RPR=45.0;EPP=5.09662;EPPR=4.28764;DPRA=2.77966;ODDS=37.0506;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.9294;PAIRED=1.0;PAIREDR=0.994118;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.574;Dels=0.0;FS=0.0;HaplotypeScore=17.321;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.238;QD=10.32;ReadPosRankSum=-2.228;SOR=0.651	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.522:58:58:2089:0:0:0.0,-15.6649,-188.131:0:0:57:57,0:.:0.0:0:.:.:.:0:.:.:0:-0.000266909	0/1:129.501:164:112:3946:51:1958:-132.132,0.0,-310.915:51:31:163:110,50:38.0:0.31:2:1720,0,3848:.:1:1:.:.:1:-0.00804187
chr10	104387019	.	T	C	4303.945	REJECT	NS=2;DP=273;DPB=315.0;AC=2;AN=4;AF=0.5;RO=158;AO=157;PRO=0.0;PAO=0.0;QR=6049;QA=6004;PQR=0.0;PQA=0.0;SRF=54;SRR=104;SAF=50;SAR=107;SRP=37.369;SAP=47.9473;AB=0.498413;ABP=3.01719;RUN=1;RPP=4.68386;RPPR=8.5077;RPL=84.0;RPR=73.0;EPP=14.6422;EPPR=20.8219;DPRA=0.0;ODDS=251.107;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9125;Dels=0.0;FS=1.6415;HaplotypeScore=5.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.596;QD=17.805;ReadPosRankSum=1.513;SOR=0.712;ClippingRankSum=0.169	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.8725:83:39:1489:44:1649:-125.965,0.0,-111.579:44:53:83:39,44:1490,0,1367:1:.:1:.:.:.:-0.000266909	0/1:120.8725:232:119:4560:113:4355:-328.935,0.0,-347.342:113:49:232:119,113:4205,0,4377:.:1:1:.:.:.:-0.00804187
chr10	104389932	.	T	G	10011.635	REJECT	NS=2;DP=266;DPB=302.0;AC=4;AN=4;AF=1.0;RO=0;AO=302;PRO=0.0;PAO=0.0;QR=0;QA=11575;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=77;SAR=225;SRP=0.0;SAP=160.507;AB=0.0;ABP=0.0;RUN=1;RPP=66.5438;RPPR=0.0;RPL=198.0;RPR=104.0;EPP=16.9307;EPPR=0.0;DPRA=0.0;ODDS=48.6435;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.045;SOR=2.1605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.3685:70:0:0:71:2681:-241.451,-19.2506,0.0:70:100:70:0,70:2874,210,0:1:.:1:.:.:.:-0.000266909	1/1:120.3685:231:0:0:231:8894:-800.034,-62.5579,0.0:231:100:231:0,231:9919,683,0:.:1:1:.:.:.:-0.00804187
chr10	104849468	.	G	A	2243.965	REJECT	NS=2;DP=314;DPB=366.0;AC=2;AN=4;AF=0.5;RO=257;AO=109;PRO=0.0;PAO=0.0;QR=9723;QA=4044;PQR=0.0;PQA=0.0;SRF=179;SRR=78;SAF=72;SAR=37;SRP=89.2017;SAP=27.4145;AB=0.297814;ABP=132.966;RUN=1;RPP=7.4927;RPPR=55.7424;RPL=47.0;RPR=62.0;EPP=10.2021;EPPR=3.22153;DPRA=0.0;ODDS=195.759;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8899;MQMR=60.0;PAIRED=0.981651;PAIREDR=0.996109;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.813;Dels=0.0;FS=2.363;HaplotypeScore=6.8651;MLEAC=1;MLEAF=0.5;MQ=59.945;MQRankSum=0.23;QD=11.705;ReadPosRankSum=1.1175;SOR=0.493;ClippingRankSum=-1.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.8695:102:41:1557:63:2289:-177.863,0.0,-111.987:61:60:102:41,59:1961,0,1323:1:.:1:.:.:.:-0.000266909	0/1:121.8695:262:216:8166:46:1755:-86.9301,0.0,-663.605:46:18:262:216,46:1198,0,8337:.:1:1:.:.:.:-0.00804187
chr10	104851285	.	G	A	1198.335	REJECT	NS=2;DP=243;DPB=275.0;AC=2;AN=4;AF=0.5;RO=212;AO=62;PRO=0.0;PAO=0.0;QR=8177;QA=2368;PQR=0.0;PQA=0.0;SRF=147;SRR=65;SAF=43;SAR=19;SRP=71.8828;SAP=23.184;AB=0.225455;ABP=183.053;RUN=1;RPP=26.6864;RPPR=53.2;RPL=18.0;RPR=44.0;EPP=8.05372;EPPR=3.17418;DPRA=0.0;ODDS=89.5439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.967742;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1185;Dels=0.0;FS=0.0;HaplotypeScore=6.8986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0015;QD=10.43;ReadPosRankSum=0.4335;SOR=0.562;ClippingRankSum=1.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.364:62:30:1163:33:1265:-96.8477,0.0,-87.6692:32:51:62:30,31:1138,0,1045:1:.:1:.:.:.:-0.000266909	0/1:120.364:212:182:7014:29:1103:-42.0682,0.0,-573.814:29:14:211:182,29:594,0,7215:.:1:1:.:.:.:-0.00804187
chr10	104851396	.	G	T	1776.545	REJECT	NS=2;DP=325;DPB=360.0;AC=2;AN=4;AF=0.5;RO=275;AO=85;PRO=0.0;PAO=0.0;QR=10535;QA=3250;PQR=0.0;PQA=0.0;SRF=92;SRR=183;SAF=26;SAR=59;SRP=68.3993;SAP=30.8307;AB=0.236111;ABP=220.761;RUN=1;RPP=16.5245;RPPR=68.3993;RPL=54.0;RPR=31.0;EPP=5.07959;EPPR=7.94546;DPRA=0.0;ODDS=104.19;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976471;PAIREDR=0.992727;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.637;Dels=0.0;FS=1.9555;HaplotypeScore=5.8986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.101;QD=13.485;ReadPosRankSum=-0.596;SOR=0.6325;ClippingRankSum=-0.251	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:69:22:822:48:1843:-147.002,0.0,-55.0428:47:68:69:22,47:1730,0,669:1:.:1:.:.:.:-0.000266909	0/1:129.501:290:253:9713:37:1407:-48.0014,0.0,-795.13:37:13:290:253,37:699,0,10014:.:1:1:.:.:.:-0.00804187
chr10	104855656	.	T	C	846.481	REJECT	NS=2;DP=266;DPB=303.0;AC=2;AN=4;AF=0.5;RO=251;AO=52;PRO=0.0;PAO=0.0;QR=9703;QA=2035;PQR=0.0;PQA=0.0;SRF=157;SRR=94;SAF=35;SAR=17;SRP=37.3472;SAP=16.5402;AB=0.171617;ABP=286.814;RUN=1;RPP=27.0635;RPPR=74.6516;RPL=14.0;RPR=38.0;EPP=4.51363;EPPR=23.782;DPRA=0.0;ODDS=85.2191;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98008;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.682;Dels=0.0;FS=1.327;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1865;QD=6.67;ReadPosRankSum=0.8315;SOR=0.877;ClippingRankSum=0.757	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:70:48:1871:23:900:-61.7865,0.0,-149.231:23:32:70:46,23:802,0,1766:1:.:1:.:.:.:-0.000266909	0/1:129.501:231:203:7832:29:1135:-39.2578,0.0,-641.675:29:13:231:201,29:590,0,7967:.:1:1:.:.:.:-0.00804187
chr10	104855670	.	G	A	1040.24	REJECT	NS=2;DP=317;DPB=363.0;AC=2;AN=4;AF=0.5;RO=300;AO=63;PRO=0.0;PAO=0.0;QR=11346;QA=2426;PQR=0.0;PQA=0.0;SRF=175;SRR=125;SAF=38;SAR=25;SRP=21.1059;SAP=8.83536;AB=0.173554;ABP=339.014;RUN=1;RPP=12.9715;RPPR=40.5333;RPL=23.0;RPR=40.0;EPP=5.80219;EPPR=47.0478;DPRA=0.0;ODDS=91.9675;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.685;Dels=0.0;FS=0.429;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.473;QD=6.44;ReadPosRankSum=0.538;SOR=0.7995;ClippingRankSum=-0.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:60:2329:30:1141:-78.3208,0.0,-185.261:30:33:89:58,30:980,0,2131:1:.:1:.:.:.:-0.000266909	0/1:129.501:272:240:9017:33:1285:-41.6954,0.0,-737.157:33:12:272:238,33:651,0,9118:.:1:1:.:.:.:-0.00804187
chr10	104860395	.	T	G	9107.62	REJECT	NS=2;DP=244;DPB=272.0;AC=4;AN=4;AF=1.0;RO=0;AO=272;PRO=0.0;PAO=0.0;QR=0;QA=10341;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=174;SAR=98;SRP=0.0;SAP=49.1222;AB=0.0;ABP=0.0;RUN=1;RPP=110.434;RPPR=0.0;RPL=78.0;RPR=194.0;EPP=3.52123;EPPR=0.0;DPRA=0.0;ODDS=38.6158;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992647;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8656;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.545;SOR=1.406	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.0355:54:0:0:55:2091:-188.355,-14.8956,0.0:54:100:54:0,53:2276,160,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:216:0:0:217:8250:-742.111,-58.7289,0.0:216:100:216:0,216:9147,635,0:.:1:1:.:.:.:-0.00804187
chr10	104899197	.	C	G	5687.09	REJECT	NS=2;DP=364;DPB=411.0;AC=2;AN=4;AF=0.5;RO=208;AO=201;PRO=0.0;PAO=0.0;QR=7839;QA=7660;PQR=0.0;PQA=0.0;SRF=90;SRR=118;SAF=82;SAR=119;SRP=11.1951;SAP=17.8001;AB=0.489051;ABP=3.43825;RUN=1;RPP=3.88537;RPPR=7.18621;RPL=105.0;RPR=96.0;EPP=22.9857;EPPR=7.18621;DPRA=0.0;ODDS=233.355;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9602;MQMR=60.0;PAIRED=0.995025;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.581;Dels=0.0;FS=2.1335;HaplotypeScore=18.3698;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.1045;QD=16.395;ReadPosRankSum=-0.7815;SOR=0.917;ClippingRankSum=-1.1	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:53:1994:38:1419:-103.087,0.0,-154.856:38:43:88:48,38:1253,0,1763:1:.:1:.:.:.:-0.000266909	0/1:129.501:318:155:5845:163:6241:-475.243,0.0,-439.61:162:51:317:155,162:6029,0,5562:.:1:1:.:.:.:-0.00804187
chr10	111003099	.	A	G	5596.49	REJECT	NS=2;DP=212;DPB=244.0;AC=2;AN=4;AF=0.5;RO=54;AO=190;PRO=0.0;PAO=0.0;QR=2077;QA=7211;PQR=0.0;PQA=0.0;SRF=36;SRR=18;SAF=130;SAR=60;SRP=16.0391;SAP=59.0114;AB=0.778689;ABP=167.615;RUN=1;RPP=108.338;RPPR=39.2015;RPL=47.0;RPR=143.0;EPP=7.58182;EPPR=3.17115;DPRA=0.0;ODDS=73.8532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989474;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1945;Dels=0.0;FS=0.0;HaplotypeScore=5.8786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5305;QD=25.68;ReadPosRankSum=0.489;SOR=0.7;ClippingRankSum=-2.243	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:63:29:1131:35:1320:-101.528,0.0,-84.524:34:54:63:29,33:1171,0,1024:1:.:1:.:.:.:-0.000266909	0/1:129.501:180:25:946:155:5891:-481.265,0.0,-36.3607:154:85:180:27,153:5956,0,606:.:1:1:.:.:.:-0.00804187
chr10	111003232	.	G	T	7330.69	REJECT	NS=2;DP=276;DPB=323.0;AC=2;AN=4;AF=0.5;RO=77;AO=246;PRO=0.0;PAO=0.0;QR=2930;QA=9353;PQR=0.0;PQA=0.0;SRF=27;SRR=50;SAF=78;SAR=168;SRP=17.9286;SAP=74.51;AB=0.76161;ABP=195.021;RUN=1;RPP=59.5039;RPPR=11.1604;RPL=163.0;RPR=83.0;EPP=20.0996;EPPR=15.4469;DPRA=0.0;ODDS=72.1841;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99187;PAIREDR=0.987013;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7875;Dels=0.0;FS=0.8615;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.352;QD=25.09;ReadPosRankSum=-0.011;SOR=0.8525;ClippingRankSum=0.162	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:48:1862:44:1677:-126.033,0.0,-142.675:43:48:91:47,43:1482,0,1761:1:.:1:.:.:.:-0.000266909	0/1:129.501:230:29:1068:202:7676:-627.946,0.0,-33.5443:201:87:230:29,200:7859,0,508:.:1:1:.:.:.:-0.00804187
chr10	112356331	.	G	A	9514.835	REJECT	NS=2;DP=254;DPB=296.0;AC=4;AN=4;AF=1.0;RO=0;AO=296;PRO=0.0;PAO=0.0;QR=0;QA=11336;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=98;SAR=198;SRP=0.0;SAP=76.3709;AB=0.0;ABP=0.0;RUN=1;RPP=79.3346;RPPR=0.0;RPL=199.0;RPR=97.0;EPP=4.44817;EPPR=0.0;DPRA=0.0;ODDS=56.703;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=35.29;SOR=1.6265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.81:84:0:0:84:3192:-287.361,-22.7507,0.0:84:100:84:0,84:3323,251,0:1:.:1:.:.:.:-0.000266909	1/1:123.81:212:0:0:212:8144:-732.592,-57.4045,0.0:212:100:212:0,212:9052,623,0:.:1:1:.:.:.:-0.00804187
chr10	112361870	.	A	G	13516.15	REJECT	NS=2;DP=356;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15770;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=211;SAR=199;SRP=0.0;SAP=3.77296;AB=0.0;ABP=0.0;RUN=1;RPP=3.20097;RPPR=0.0;RPL=208.0;RPR=202.0;EPP=3.34926;EPPR=0.0;DPRA=0.0;ODDS=72.8328;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.3634;MQMR=0.0;PAIRED=0.997561;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=2;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=58.545;QD=30.255;SOR=0.763	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:110:4214:-378.342,-29.7558,0.0:108:100:108:0,107:4324,321,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:301:0:0:300:11556:-1038.15,-81.2492,0.0:301:100:301:0,302:12939,894,0:.:1:1:.:.:.:-0.00804187
chr10	114003865	.	A	C	957.386	REJECT	NS=1;DP=72;DPB=72.0;AC=1;AN=4;AF=0.5;RO=36;AO=36;PRO=0.0;PAO=0.0;QR=1402;QA=1362;PQR=0.0;PQA=0.0;SRF=28;SRR=8;SAF=26;SAR=10;SRP=27.1378;SAP=18.4519;AB=0.5;ABP=3.0103;RUN=1;RPP=14.8328;RPPR=18.4519;RPL=11.0;RPR=25.0;EPP=3.25157;EPPR=3.0103;DPRA=0.0;ODDS=220.446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.972222;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.435;FS=2.38;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.339;QD=17.62;ReadPosRankSum=0.564;SOR=0.354;ClippingRankSum=-0.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:36:1402:36:1362:-103.132,0.0,-106.725:35:50:71:35,35:1279,0,1308:1:.:1:.:.:.:-0.000266909	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.00804187
chr10	114905753	.	G	T	336.818	REJECT	NS=2;DP=334;DPB=341.0;AC=2;AN=2;AF=0.0;RO=256;AO=43;PRO=7.0;PAO=7.0;QR=8961;QA=753;PQR=122.5;PQA=122.5;SRF=146;SRR=110;SAF=43;SAR=0;SRP=14.0034;SAP=96.3836;AB=0.128743;ABP=402.873;RUN=1;RPP=39.8243;RPPR=155.319;RPL=35.0;RPR=8.0;EPP=39.8243;EPPR=8.74434;DPRA=0.0;ODDS=25.6435;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=59.6977;MQMR=59.9219;PAIRED=0.976744;PAIREDR=0.996094;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.707:86:67:2309:12:217:-27.5376,-29.3748,-215.972:12:14:84:.:.:1:.:.:.:-0.000266909	./1:111.356:248:189:6652:31:536:-24.4856,-35.7389,-575.25:31:13:244:.:.:1:.:.:.:-0.00804187
chr10	114905753	.	GTA	TTT	336.818	REJECT	NS=2;DP=334;DPB=341.0;AC=2;AN=4;AF=0.5;RO=256;AO=29;PRO=7.0;PAO=0.0;QR=8961;QA=398;PQR=122.5;PQA=0.0;SRF=146;SRR=110;SAF=29;SAR=0;SRP=14.0034;SAP=65.983;AB=0.0868263;ABP=498.262;RUN=1;RPP=30.0414;RPPR=155.319;RPL=24.0;RPR=5.0;EPP=30.0414;EPPR=8.74434;DPRA=0.0;ODDS=25.6435;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=2;MEANALT=3.0;LEN=3;MQM=59.1034;MQMR=59.9219;PAIRED=1.0;PAIREDR=0.996094;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:136.707:86:67:2309:5:72:-27.5376,0.0,-197.828:5:6:84:.:.:1:.:.:.:-0.000266909	0/1:111.356:248:189:6652:24:326:-24.4856,0.0,-568.665:24:10:244:.:.:1:.:.:.:-0.00804187
chr10	114919603	.	C	CT	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:10,0:10:2.4,0.0:60.0,0.0:28.403,0.0:0.0895522,0.0:0,0:0,0:9,1,0,0:0:0:10:.:.:.:.:0:.:-0.000266909	0/1:13,25:41:5.61538,3.0:57.7692,67.6:24.381,30.4044:0.0952381,0.08:91,8:8,8:13,0,18,7:25:66:38:.:.:.:.:1:.:-0.00804187
chr10	114925491	.	C	T	4954.715	REJECT	NS=2;DP=345;DPB=394.0;AC=2;AN=4;AF=0.5;RO=208;AO=186;PRO=0.0;PAO=0.0;QR=7913;QA=7039;PQR=0.0;PQA=0.0;SRF=93;SRR=115;SAF=88;SAR=98;SRP=8.06315;SAP=4.17776;AB=0.472081;ABP=5.67779;RUN=1;RPP=10.9023;RPPR=4.51363;RPL=106.0;RPR=80.0;EPP=4.17776;EPPR=8.06315;DPRA=0.0;ODDS=283.879;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.11;Dels=0.0;FS=0.6995;HaplotypeScore=2.9441;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3775;QD=17.575;ReadPosRankSum=0.38;SOR=0.658;ClippingRankSum=-0.562	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.356:97:44:1665:53:2027:-156.19,0.0,-123.589:53:55:97:44,53:1898,0,1520:1:.:1:.:.:.:-0.000266909	0/1:119.356:297:164:6248:133:5012:-370.398,0.0,-481.576:133:45:297:164,133:4742,0,6123:.:1:1:.:.:.:-0.00804187
chr10	123239112	.	G	A	12392.9	REJECT	NS=2;DP=325;DPB=368.0;AC=4;AN=4;AF=1.0;RO=0;AO=368;PRO=0.0;PAO=0.0;QR=0;QA=14184;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=147;SRP=0.0;SAP=35.3228;AB=0.0;ABP=0.0;RUN=1;RPP=14.4341;RPPR=0.0;RPL=162.0;RPR=206.0;EPP=35.3228;EPPR=0.0;DPRA=0.0;ODDS=57.3998;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991848;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.57;SOR=1.1625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.54:83:0:0:85:3296:-296.748,-23.0534,0.0:83:100:83:0,82:3374,247,0:1:.:1:.:.:.:-0.000266909	1/1:124.54:283:0:0:283:10888:-979.326,-76.6357,0.0:283:100:283:0,283:12171,840,0:.:1:1:.:.:.:-0.00804187
chr10	123240287	.	T	C	15441.099999999999	REJECT	NS=2;DP=406;DPB=464.0;AC=4;AN=4;AF=1.0;RO=0;AO=464;PRO=0.0;PAO=0.0;QR=0;QA=17796;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=268;SAR=196;SRP=0.0;SAP=27.2709;AB=0.0;ABP=0.0;RUN=1;RPP=13.7928;RPPR=0.0;RPL=256.0;RPR=208.0;EPP=3.30981;EPPR=0.0;DPRA=0.0;ODDS=76.084;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991379;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.8629;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.72;SOR=1.049	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.7775:113:0:0:115:4392:-395.293,-31.1678,0.0:113:100:113:0,112:4598,337,0:1:.:1:.:.:.:-0.000266909	1/1:123.7775:348:0:0:349:13404:-1205.58,-94.523,0.0:348:100:348:0,348:14980,1038,0:.:1:1:.:.:.:-0.00804187
chr10	123240903	.	GACAC	G	6390.45	REJECT	NS=2;DP=250;DPB=352.146;AC=2;AN=2;AF=0.5;RO=0;AO=190;PRO=94.8333;PAO=101.833;QR=0;QA=6668;PQR=3420.5;PQA=3641.5;SRF=0;SRR=0;SAF=130;SAR=60;SRP=0.0;SAP=59.0114;AB=0.76;ABP=149.802;RUN=1;RPP=5.93607;RPPR=0.0;RPL=87.0;RPR=103.0;EPP=3.74174;EPPR=0.0;DPRA=0.0;ODDS=15.8033;GTI=0;TYPE=del;CIGAR=1M4D36M;NUMALT=2;MEANALT=9.0;LEN=4;MQM=60.5263;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.338;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=-0.039;QD=25.715;RPA=16;RU=AC;ReadPosRankSum=0.118;SOR=1.2535;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:83.81645:71:0:0:53:1817:-174.475,-22.0414,-7.4566:55:83:67:0,58:2890,405,197:1:.:1:.:.:.:-0.000266909	./1:129.501:229:0:0:137:4851:-479.407,-62.7362,-26.7064:142:82:172:1,147:10684,1179,670:.:1:1:.:.:.:-0.00804187
chr10	123240903	.	GACACAC	G	6390.45	REJECT	NS=2;DP=250;DPB=352.146;AC=2;AN=2;AF=0.5;RO=0;AO=33;PRO=94.8333;PAO=88.3333;QR=0;QA=1055;PQR=3420.5;PQA=3183.0;SRF=0;SRR=0;SAF=18;SAR=15;SRP=0.0;SAP=3.60252;AB=0.132;ABP=297.08;RUN=1;RPP=3.60252;RPPR=0.0;RPL=18.0;RPR=15.0;EPP=3.60252;EPPR=0.0;DPRA=0.0;ODDS=15.8033;GTI=0;TYPE=del;CIGAR=1M6D34M;NUMALT=2;MEANALT=9.0;LEN=6;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.338;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=-0.039;QD=25.715;RPA=16;RU=AC;ReadPosRankSum=0.118;SOR=1.2535;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:83.81645:71:0:0:9:290:-174.475,-152.433,-166.931:11:17:67:0,14:2890,1858,1726:1:.:1:.:.:.:-0.000266909	./1:129.501:229:0:0:24:765:-479.407,-414.063,-507.252:29:17:172:1,35:10684,5872,5879:.:1:1:.:.:.:-0.00804187
chr10	123241332	.	G	A	7412.67	REJECT	NS=2;DP=225;DPB=256.0;AC=4;AN=4;AF=1.0;RO=0;AO=253;PRO=0.0;PAO=0.0;QR=0;QA=8842;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=40;SAR=213;SRP=0.0;SAP=259.888;AB=0.0;ABP=0.0;RUN=1;RPP=159.434;RPPR=0.0;RPL=194.0;RPR=59.0;EPP=62.1379;EPPR=0.0;DPRA=0.0;ODDS=42.235;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9763;MQMR=0.0;PAIRED=0.98419;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=15.3822;MLEAC=2;MLEAF=1.0;MQ=59.93;QD=29.885;SOR=3.78	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:57:0:0:61:2036:-183.368,-16.4673,0.0:57:100:57:0,53:2046,158,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:195:0:0:192:6806:-612.272,-51.8711,0.0:192:100:192:0,192:7460,536,0:.:1:1:.:.:.:-0.00804187
chr10	123241368	.	TGAGAC	GAGAT	4259.36	REJECT	SOMATIC;NS=2;DP=109;DPB=171.9;AC=1;AN=3;AF=0.25;RO=0;AO=15;PRO=30.75;PAO=28.9167;QR=0;QA=473;PQR=1077.42;PQA=1025.58;SRF=0;SRR=0;SAF=3;SAR=12;SRP=0.0;SAP=14.7363;AB=0.1625;ABP=82.1605;RUN=1;RPP=6.62942;RPPR=0.0;RPL=5.0;RPR=10.0;EPP=4.31318;EPPR=0.0;DPRA=0.0;ODDS=9.02944;GTI=0;TYPE=complex;CIGAR=1M1D17M1X;NUMALT=3;MEANALT=7.5;LEN=19;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:39.2081:29:0:0:2:53:-96.4355,-76.2675,-121.869:2:7:27:.:.:.:.:.:.:-0.000266909	./1:84.3136:80:0:0:13:420:-354.344,-159.889,-271.434:13:19:70:.:.:1:.:.:.:-0.00804187
chr10	123241369	.	GAGAC	TGAGAT	4259.36	REJECT	NS=2;DP=109;DPB=171.9;AC=0;AN=4;AF=0.0;RO=0;AO=8;PRO=30.75;PAO=29.9167;QR=0;QA=184;PQR=1077.42;PQA=1063.25;SRF=0;SRR=0;SAF=0;SAR=8;SRP=0.0;SAP=20.3821;AB=0.0875;ABP=121.247;RUN=1;RPP=4.09604;RPPR=0.0;RPL=5.0;RPR=3.0;EPP=4.09604;EPPR=0.0;DPRA=0.0;ODDS=9.02944;GTI=0;TYPE=complex;CIGAR=1M1I18M1X;NUMALT=3;MEANALT=7.5;LEN=21;MQM=57.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:39.2081:29:0:0:1:30:-96.4355,-78.061,-98.5135:1:4:27:.:.:.:.:.:.:-0.000266909	0/0:84.3136:80:0:0:7:154:-354.344,-180.924,-237.727:7:10:70:.:.:.:.:.:.:-0.00804187
chr10	123241373	.	C	T	4139.065	REJECT	NS=2;DP=104;DPB=171.9;AC=3;AN=3;AF=0.875;RO=0;AO=74;PRO=30.75;PAO=37.4167;QR=0;QA=2616;PQR=1077.42;PQA=1324.75;SRF=0;SRR=0;SAF=9;SAR=65;SRP=0.0;SAP=95.0338;AB=0.625;ABP=13.8677;RUN=1;RPP=26.0162;RPPR=0.0;RPL=51.0;RPR=23.0;EPP=29.4201;EPPR=0.0;DPRA=0.0;ODDS=9.02944;GTI=0;TYPE=snp;CIGAR=19M1X;NUMALT=3;MEANALT=7.5;LEN=1;MQM=59.2027;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.0;MQ=59.57;QD=32.49;SOR=2.9025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:55.60405:26:0:0:24:851:-96.4355,-8.13163,0.0:24:94:25:0,24:999,72,0:1:.:1:.:.:.:-0.000266909	./1:91.6568:90:0:0:50:1765:-354.344,-43.1131,-14.9687:75:85:85:0,100:4047,292,0:.:1:1:.:.:.:-0.00804187
chr10	123241496	.	T	C	3724.5	REJECT	NS=2;DP=105;DPB=120.0;AC=4;AN=4;AF=1.0;RO=0;AO=120;PRO=0.0;PAO=0.0;QR=0;QA=4381;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=74;SAR=46;SRP=0.0;SAP=17.1973;AB=0.0;ABP=0.0;RUN=1;RPP=4.16842;RPPR=0.0;RPL=64.0;RPR=56.0;EPP=5.61607;EPPR=0.0;DPRA=0.0;ODDS=23.0959;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9083;MQMR=0.0;PAIRED=0.975;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=59.945;QD=27.59;SOR=1.313	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:93.652:29:0:0:30:1146:-103.43,-8.15537,0.0:29:100:29:0,29:1244,87,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:90:0:0:90:3235:-291.202,-24.3567,0.0:90:100:90:0,90:3583,259,0:.:1:1:.:.:.:-0.00804187
chr10	123242026	.	T	C	16354.35	REJECT	NS=2;DP=441;DPB=500.0;AC=4;AN=4;AF=1.0;RO=0;AO=500;PRO=0.0;PAO=0.0;QR=0;QA=18685;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=265;SAR=235;SRP=0.0;SAP=6.91895;AB=0.0;ABP=0.0;RUN=1;RPP=3.16665;RPPR=0.0;RPL=247.0;RPR=253.0;EPP=7.45748;EPPR=0.0;DPRA=0.0;ODDS=76.6031;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8631;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.295;SOR=0.8935	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.37:114:0:0:116:4321:-388.864,-31.3933,0.0:114:100:114:0,113:4489,339,0:1:.:1:.:.:.:-0.000266909	1/1:128.37:383:0:0:384:14364:-1291.81,-103.873,0.0:383:100:383:0,383:15982,1120,0:.:1:1:.:.:.:-0.00804187
chr10	123242724	.	T	C	12418.849999999999	REJECT	NS=2;DP=328;DPB=375.0;AC=4;AN=4;AF=1.0;RO=0;AO=375;PRO=0.0;PAO=0.0;QR=0;QA=14295;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=210;SAR=165;SRP=0.0;SAP=14.7363;AB=0.0;ABP=0.0;RUN=1;RPP=15.8017;RPPR=0.0;RPL=164.0;RPR=211.0;EPP=5.1007;EPPR=0.0;DPRA=0.0;ODDS=61.3787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986667;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.015;SOR=1.0325	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.3455:90:0:0:93:3463:-311.316,-24.7814,0.0:90:100:90:0,88:3679,263,0:1:.:1:.:.:.:-0.000266909	1/1:124.3455:281:0:0:282:10832:-974.287,-76.3608,0.0:281:100:281:0,281:12078,834,0:.:1:1:.:.:.:-0.00804187
chr10	123242780	.	G	C	13334.55	REJECT	NS=2;DP=350;DPB=409.0;AC=4;AN=4;AF=1.0;RO=0;AO=408;PRO=0.0;PAO=0.0;QR=0;QA=15773;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=208;SAR=200;SRP=0.0;SAP=3.35092;AB=0.0;ABP=0.0;RUN=1;RPP=4.37279;RPPR=0.0;RPL=212.0;RPR=196.0;EPP=3.09546;EPPR=0.0;DPRA=0.0;ODDS=76.7081;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.982843;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.395;SOR=0.7555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4446:-400.14,-31.4389,0.0:114:100:114:0,113:4704,340,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:292:0:0:292:11327:-1018.78,-79.0845,0.0:291:100:291:0,290:12552,861,0:.:1:1:.:.:.:-0.00804187
chr10	123243197	.	G	A	14974.0	REJECT	NS=2;DP=390;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=441;PRO=0.0;PAO=0.0;QR=0;QA=17015;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=220;SRP=0.0;SAP=3.01522;AB=0.0;ABP=0.0;RUN=1;RPP=12.9813;RPPR=0.0;RPL=243.0;RPR=198.0;EPP=3.6061;EPPR=0.0;DPRA=0.0;ODDS=67.345;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995465;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9662;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.255;SOR=0.696	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.802:100:0:0:101:3872:-348.526,-27.3725,0.0:100:100:100:0,100:4267,301,0:1:.:1:.:.:.:-0.000266909	1/1:127.802:339:0:0:340:13143:-1182.11,-92.1029,0.0:339:100:339:0,339:14723,1017,0:.:1:1:.:.:.:-0.00804187
chr10	123298158	.	T	C	16363.4	REJECT	NS=2;DP=437;DPB=495.0;AC=4;AN=4;AF=1.0;RO=0;AO=495;PRO=0.0;PAO=0.0;QR=0;QA=18700;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=270;SRP=0.0;SAP=11.8936;AB=0.0;ABP=0.0;RUN=1;RPP=3.36563;RPPR=0.0;RPL=252.0;RPR=243.0;EPP=3.75167;EPPR=0.0;DPRA=0.0;ODDS=76.035;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99798;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.27;SOR=0.88	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:115:4327:-389.429,-31.1465,0.0:115:100:115:0,115:4754,345,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:379:0:0:380:14373:-1292.31,-102.477,0.0:379:100:379:0,379:15991,1114,0:.:1:1:.:.:.:-0.00804187
chr10	129009160	.	G	A	5032.84	REJECT	NS=2;DP=373;DPB=427.0;AC=2;AN=4;AF=0.5;RO=237;AO=189;PRO=0.0;PAO=0.0;QR=9089;QA=7294;PQR=0.0;PQA=0.0;SRF=129;SRR=108;SAF=94;SAR=95;SRP=7.05089;SAP=3.02179;AB=0.442623;ABP=15.2204;RUN=1;RPP=10.1911;RPPR=3.75245;RPL=82.0;RPR=107.0;EPP=30.596;EPPR=11.8153;DPRA=0.0;ODDS=359.425;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989418;PAIREDR=0.991561;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0715;Dels=0.0;FS=3.0645;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.005;QD=16.44;ReadPosRankSum=1.065;SOR=0.5645;ClippingRankSum=0.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:53:2067:55:2136:-162.97,0.0,-156.76:54:51:106:50,54:1934,0,1801:1:.:1:.:.:.:-0.000266909	0/1:129.501:319:184:7022:134:5158:-377.826,0.0,-545.48:134:42:318:184,134:4781,0,6890:.:1:1:.:.:.:-0.00804187
chr10	131166609	.	G	A	13453.349999999999	REJECT	NS=2;DP=352;DPB=408.0;AC=4;AN=4;AF=1.0;RO=0;AO=408;PRO=0.0;PAO=0.0;QR=0;QA=15779;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=219;SAR=189;SRP=0.0;SAP=7.80031;AB=0.0;ABP=0.0;RUN=1;RPP=15.2727;RPPR=0.0;RPL=180.0;RPR=228.0;EPP=9.16281;EPPR=0.0;DPRA=0.0;ODDS=74.2389;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997549;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.875;SOR=0.9715	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.9215:112:0:0:112:4356:-392.049,-30.3665,0.0:112:100:112:0,112:4498,337,0:1:.:1:.:.:.:-0.000266909	1/1:126.9215:296:0:0:296:11423:-1027.47,-80.1826,0.0:296:100:296:0,296:12805,885,0:.:1:1:.:.:.:-0.00804187
chr10	131166636	.	G	A	15286.25	REJECT	NS=2;DP=400;DPB=458.0;AC=4;AN=4;AF=1.0;RO=0;AO=457;PRO=0.0;PAO=0.0;QR=0;QA=17663;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=218;SAR=239;SRP=0.0;SAP=5.10575;AB=0.0;ABP=0.0;RUN=1;RPP=6.4742;RPPR=0.0;RPL=215.0;RPR=242.0;EPP=26.963;EPPR=0.0;DPRA=0.0;ODDS=76.711;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995624;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.655;SOR=0.884	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:116:4464:-401.762,-31.4401,0.0:116:100:116:0,116:4802,349,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:342:0:0:341:13199:-1187.15,-92.3748,0.0:341:100:341:0,341:14784,1020,0:.:1:1:.:.:.:-0.00804187
chr10	131170360	.	T	C	13292.75	REJECT	NS=2;DP=350;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=404;PRO=0.0;PAO=0.0;QR=0;QA=15564;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=223;SAR=181;SRP=0.0;SAP=12.4917;AB=0.0;ABP=0.0;RUN=1;RPP=3.54779;RPPR=0.0;RPL=207.0;RPR=197.0;EPP=9.97621;EPPR=0.0;DPRA=0.0;ODDS=72.9691;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992574;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.51;SOR=0.868	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:110:4233:-380.989,-29.815,0.0:109:100:109:0,108:4581,325,0:1:.:1:.:.:.:-0.000266909	1/1:129.501:295:0:0:294:11331:-1019.18,-79.6332,0.0:294:100:294:0,294:12671,876,0:.:1:1:.:.:.:-0.00804187
chr10	131664108	.	T	C	8226.85	REJECT	NS=2;DP=332;DPB=381.0;AC=2;AN=4;AF=0.5;RO=110;AO=271;PRO=0.0;PAO=0.0;QR=4172;QA=10409;PQR=0.0;PQA=0.0;SRF=59;SRR=51;SAF=169;SAR=102;SRP=4.2737;SAP=38.9798;AB=0.711286;ABP=150.745;RUN=1;RPP=4.81318;RPPR=4.98437;RPL=143.0;RPR=128.0;EPP=7.24908;EPPR=23.2247;DPRA=0.0;ODDS=234.721;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99631;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0025;Dels=0.0;FS=4.1985;HaplotypeScore=6.7819;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.714;QD=22.48;ReadPosRankSum=-0.1375;SOR=1.0975;ClippingRankSum=-2.001	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:57:2170:40:1533:-111.704,0.0,-169.052:40:41:96:55,40:1268,0,2015:1:.:1:.:.:.:-0.000266909	0/1:129.501:284:53:2002:231:8876:-721.45,0.0,-103.176:231:81:284:53,231:9090,0,1391:.:1:1:.:.:.:-0.00804187
chr11	2169014	.	A	G	4951.99	REJECT	NS=1;DP=149;DPB=149.0;AC=2;AN=4;AF=1.0;RO=0;AO=149;PRO=0.0;PAO=0.0;QR=0;QA=5586;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=99;SRP=0.0;SAP=38.0016;AB=0.0;ABP=0.0;RUN=1;RPP=5.47325;RPPR=0.0;RPL=81.0;RPR=68.0;EPP=3.37464;EPPR=0.0;DPRA=0.0;ODDS=97.4315;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993289;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.67;SOR=1.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.002:148:0:0:149:5586:-502.577,-40.314,0.0:148:100:148:0,147:5938,440,0:1:.:1:.:.:.:8.2886e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.01206
chr11	14316128	.	T	TA	191.489	REJECT	NS=2;DP=247;DPB=315.167;AC=2;AN=2;AF=0.0;RO=188;AO=16;PRO=87.6667;PAO=30.6667;QR=6993;QA=595;PQR=3102.0;PQA=1089.0;SRF=61;SRR=127;SAF=3;SAR=13;SRP=53.3238;SAP=16.582;AB=0.0647773;ABP=409.392;RUN=1;RPP=3.55317;RPPR=3.74952;RPL=7.0;RPR=9.0;EPP=3.0103;EPPR=5.27418;DPRA=0.0;ODDS=23.1721;GTI=0;TYPE=ins;CIGAR=1M1I29M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=59.9947;PAIRED=1.0;PAIREDR=0.989362;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:100.632:69:52:1935:4:158:-10.8087,-15.5653,-213.32:4:6:65:.:.:1:.:.:.:8.2886e-05	./1:114.766:178:136:5058:12:437:-13.8638,-10.5036,-566.784:12:7:163:.:.:1:.:.:.:-0.01206
chr11	14316128	.	TA	T	191.489	REJECT	NS=2;DP=247;DPB=315.167;AC=2;AN=4;AF=0.5;RO=188;AO=24;PRO=87.6667;PAO=27.6667;QR=6993;QA=925;PQR=3102.0;PQA=1000.0;SRF=61;SRR=127;SAF=14;SAR=10;SRP=53.3238;SAP=4.45795;AB=0.097166;ABP=351.158;RUN=1;RPP=4.45795;RPPR=3.74952;RPL=10.0;RPR=14.0;EPP=8.80089;EPPR=5.27418;DPRA=0.0;ODDS=23.1721;GTI=0;TYPE=del;CIGAR=1M1D28M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=59.9947;PAIRED=1.0;PAIREDR=0.989362;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:100.632:69:52:1935:9:352:-10.8087,0.0,-202.7:9:14:65:.:.:1:.:.:.:8.2886e-05	0/1:114.766:178:136:5058:15:573:-13.8638,0.0,-585.15:15:9:163:.:.:1:.:.:.:-0.01206
chr11	14378347	.	C	T	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=2;AF=0.0;RO=37;AO=20;PRO=31.2262;PAO=2.0;QR=1343;QA=245;PQR=1118.65;PQA=14.0;SRF=4;SRR=33;SAF=0;SAR=20;SRP=52.3673;SAP=46.4397;AB=0.148148;ABP=148.177;RUN=1;RPP=3.0103;RPPR=4.47751;RPL=10.0;RPR=10.0;EPP=3.0103;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=7;MEANALT=11.5;LEN=1;MQM=57.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.631:39:8:294:9:114:-8.8136,-65.7365,-779.721:9:25:36:.:.:1:.:.:.:8.2886e-05	./1:160.002:96:29:1049:11:131:-34.7486,-182.916,-1924.75:11:12:89:.:.:1:.:.:.:-0.01206
chr11	14378347	.	C	CT	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=3;AF=0.25;RO=37;AO=9;PRO=31.2262;PAO=20.2262;QR=1343;QA=290;PQR=1118.65;PQA=733.655;SRF=4;SRR=33;SAF=4;SAR=5;SRP=52.3673;SAP=3.25157;AB=0.0666667;ABP=223.198;RUN=1;RPP=14.8328;RPPR=4.47751;RPL=8.0;RPR=1.0;EPP=5.18177;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=7;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21.631:39:8:294:4:140:-8.8136,0.0,-29.2631:4:11:36:.:.:1:.:.:.:8.2886e-05	./1:160.002:96:29:1049:5:150:-34.7486,-32.9011,-143.755:5:6:89:.:.:1:.:.:.:-0.01206
chr11	14378347	.	CT	C	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=3;AF=0.25;RO=37;AO=26;PRO=31.2262;PAO=24.8929;QR=1343;QA=558;PQR=1118.65;PQA=859.655;SRF=4;SRR=33;SAF=4;SAR=22;SRP=52.3673;SAP=30.0702;AB=0.192593;ABP=113.82;RUN=1;RPP=15.0369;RPPR=4.47751;RPL=19.0;RPR=7.0;EPP=8.35546;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=7;MEANALT=11.5;LEN=1;MQM=59.8462;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.631:39:8:294:6:127:-8.8136,-1.4407,-35.8984:6:17:36:.:.:1:.:.:.:8.2886e-05	0/1:160.002:96:29:1049:20:431:-34.7486,0.0,-188.967:20:22:89:.:.:1:.:.:.:-0.01206
chr11	14378347	.	CTT	C	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=2;AF=0.0;RO=37;AO=17;PRO=31.2262;PAO=15.6429;QR=1343;QA=334;PQR=1118.65;PQA=567.905;SRF=4;SRR=33;SAF=2;SAR=15;SRP=52.3673;SAP=24.5973;AB=0.125926;ABP=167.093;RUN=1;RPP=4.1599;RPPR=4.47751;RPL=10.0;RPR=7.0;EPP=3.13803;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=7;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.941176;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.79;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-0.151;QD=1.18;RPA=18,16;RU=T;ReadPosRankSum=-0.08;SOR=0.505;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.631:39:8:294:3:58:-8.8136,-9.00783,-56.7595:3:8:36:.:.:.:.:1:.:.:.:8.2886e-05	./1:129.501:147:29:1049:14:276:-34.7486,-35.6461,-275.234:18:19:95:80,22:286,0,1776:.:1:1:.:.:.:-0.01206
chr11	14378347	.	CTTT	C	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=2;AF=0.0;RO=37;AO=3;PRO=31.2262;PAO=14.6429;QR=1343;QA=46;PQR=1118.65;PQA=529.905;SRF=4;SRR=33;SAF=0;SAR=3;SRP=52.3673;SAP=9.52472;AB=0.0769231;ABP=63.6445;RUN=1;RPP=3.73412;RPPR=4.47751;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=del;CIGAR=1M3D20M;NUMALT=7;MEANALT=10.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.146;FS=2.197;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.025;QD=4.36;ReadPosRankSum=-0.634;SOR=1.402;ClippingRankSum=0.634	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:60.3155:38:8:294:3:46:-8.8136,-12.802,-92.5225:8:23:36:23,14:312,0,654:1:.:1:.:.:.:8.2886e-05	./1:160.002:96:29:1049:0:0:-34.7486,-60.7628,-350.414:0:0:89:.:.:.:.:1:.:.:.:-0.01206
chr11	14378347	.	CTTTT	C	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=2;AF=0.0;RO=37;AO=7;PRO=31.2262;PAO=13.1429;QR=1343;QA=136;PQR=1118.65;PQA=474.571;SRF=4;SRR=33;SAF=1;SAR=6;SRP=52.3673;SAP=10.7656;AB=0.0518519;ABP=238.511;RUN=1;RPP=3.32051;RPPR=4.47751;RPL=4.0;RPR=3.0;EPP=3.32051;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=del;CIGAR=1M4D19M;NUMALT=7;MEANALT=11.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.631:39:8:294:2:47:-8.8136,-20.579,-194.541:2:6:36:.:.:1:.:.:.:8.2886e-05	./1:160.002:96:29:1049:5:89:-34.7486,-60.6069,-420.029:5:6:89:.:.:1:.:.:.:-0.01206
chr11	14378366	.	G	T	349.908	REJECT	NS=2;DP=135;DPB=201.792;AC=2;AN=2;AF=0.0;RO=37;AO=6;PRO=31.2262;PAO=20.2262;QR=1343;QA=60;PQR=1118.65;PQA=733.655;SRF=4;SRR=33;SAF=6;SAR=0;SRP=52.3673;SAP=16.0391;AB=0.0444444;ABP=246.36;RUN=1;RPP=16.0391;RPPR=4.47751;RPL=6.0;RPR=0.0;EPP=16.0391;EPPR=3.5385;DPRA=0.0;ODDS=4.97385;GTI=0;TYPE=snp;CIGAR=19M1X4M;NUMALT=7;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.631:39:8:294:1:14:-8.8136,-10.5355,-40.6277:1:3:36:.:.:1:.:.:.:8.2886e-05	./1:160.002:96:29:1049:5:46:-34.7486,-42.2582,-153.926:5:6:89:.:.:1:.:.:.:-0.01206
chr11	55511545	.	G	A	4934.77	REJECT	NS=2;DP=358;DPB=401.0;AC=2;AN=4;AF=0.5;RO=225;AO=176;PRO=0.0;PAO=0.0;QR=8624;QA=6767;PQR=0.0;PQA=0.0;SRF=98;SRR=127;SAF=78;SAR=98;SRP=11.1268;SAP=7.94546;AB=0.438903;ABP=16.0121;RUN=1;RPP=5.42853;RPPR=5.79944;RPL=95.0;RPR=81.0;EPP=3.05965;EPPR=6.49431;DPRA=0.0;ODDS=252.878;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994318;PAIREDR=0.995556;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.72;Dels=0.0;FS=1.7035;HaplotypeScore=6.8265;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.3235;QD=15.355;ReadPosRankSum=1.085;SOR=0.5655;ClippingRankSum=0.261	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:46:1711:39:1484:-110.59,0.0,-131.009:38:45:84:46,37:1288,0,1610:1:.:1:.:.:.:-0.00409698	0/1:129.501:315:179:6913:137:5283:-389.59,0.0,-536.178:137:43:315:178,137:4977,0,6745:.:1:1:.:.:.:-0.0109317
chr11	55578940	.	G	A	3470.15	REJECT	NS=2;DP=223;DPB=250.0;AC=2;AN=4;AF=0.5;RO=125;AO=125;PRO=0.0;PAO=0.0;QR=4744;QA=4800;PQR=0.0;PQA=0.0;SRF=98;SRR=27;SAF=87;SAR=38;SRP=90.5814;SAP=44.7199;AB=0.5;ABP=3.0103;RUN=1;RPP=21.9282;RPPR=17.62;RPL=46.0;RPR=79.0;EPP=3.86152;EPPR=6.91895;DPRA=0.0;ODDS=158.138;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.712;MQMR=55.84;PAIRED=0.992;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5875;Dels=0.0;FS=4.5945;HaplotypeScore=4.8486;MLEAC=1;MLEAF=0.5;MQ=55.94;MQRankSum=1.565;QD=17.575;ReadPosRankSum=-0.218;SOR=0.3045;ClippingRankSum=0.633	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.795:52:28:1058:25:957:-70.9479,0.0,-78.3721:24:46:52:28,24:885,0,1001:1:.:1:.:.:.:-0.00409698	0/1:119.795:197:97:3686:100:3843:-288.042,0.0,-275.641:100:51:197:97,100:3707,0,3523:.:1:1:.:.:.:-0.0109317
chr11	55578987	.	T	C	2725.77	PASS	DP=162;AC=2;AN=4;AF=0.5;MQ0=5;BaseQRankSum=1.7355;Dels=0.0;FS=2.6175;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=48.785;MQRankSum=0.478;QD=18.595;ReadPosRankSum=-0.4265;SOR=1.0315;ClippingRankSum=-1.736	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:35,40:75:99.0:1670,0,1373:40:53:75:1:.:.:.:.:.:-0.00409698	0/1:141,108:249:99.0:3838,0,5097:108:43:249:.:1:.:.:.:.:-0.0109317
chr11	55578987	.	TGGAC	CGGAT	3932.34	REJECT	NS=2;DP=305;DPB=318.0;AC=2;AN=4;AF=0.5;RO=162;AO=141;PRO=14.0;PAO=11.0;QR=6199;QA=5261;PQR=493.0;PQA=409.0;SRF=105;SRR=57;SAF=99;SAR=42;SRP=33.8935;SAP=53.0466;AB=0.462295;ABP=6.77656;RUN=1;RPP=3.39531;RPPR=5.63751;RPL=73.0;RPR=68.0;EPP=12.6356;EPPR=3.86817;DPRA=0.0;ODDS=227.179;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=2.0;LEN=5;MQM=48.8652;MQMR=47.7963;PAIRED=0.992908;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:138.79:75:35:1324:40:1497:-115.378,0.0,-100.437:40:53:75:.:.:1:.:.:.:-0.00409698	0/1:138.79:230:127:4875:101:3764:-289.787,0.0,-389.329:101:44:228:.:.:1:.:.:.:-0.0109317
chr11	55578991	.	C	T	2696.27	PASS	DP=160;AC=2;AN=4;AF=0.5;MQ0=5;BaseQRankSum=-0.383;Dels=0.0;FS=2.707;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=49.0;MQRankSum=1.468;QD=18.255;ReadPosRankSum=-0.733;SOR=1.069;ClippingRankSum=-0.508	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:36,44:80:99.0:1713,0,1363:44:55:80:1:.:.:.:.:.:-0.00409698	0/1:133,107:240:99.0:3736,0,4871:107:45:240:.:1:.:.:.:.:-0.0109317
chr11	55579102	.	C	T	5216.605	REJECT	NS=2;DP=342;DPB=385.0;AC=2;AN=4;AF=0.5;RO=199;AO=185;PRO=0.0;PAO=0.0;QR=7557;QA=7050;PQR=0.0;PQA=0.0;SRF=107;SRR=92;SAF=80;SAR=105;SRP=5.46548;SAP=10.3464;AB=0.480519;ABP=4.27934;RUN=1;RPP=3.58545;RPPR=13.4967;RPL=96.0;RPR=89.0;EPP=6.40249;EPPR=6.16385;DPRA=0.0;ODDS=263.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.6541;MQMR=57.1407;PAIRED=0.989189;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.625;Dels=0.0;FS=7.35;HaplotypeScore=4.813;MLEAC=1;MLEAF=0.5;MQ=59.035;MQRankSum=2.557;QD=17.185;ReadPosRankSum=0.2565;SOR=1.176;ClippingRankSum=-1.235	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:43:1615:40:1530:-115.271,0.0,-122.655:40:48:83:43,40:1472,0,1548:1:.:1:.:.:.:-0.00409698	0/1:129.501:300:156:5942:145:5520:-413.899,0.0,-439.059:144:48:300:156,144:5241,0,5623:.:1:1:.:.:.:-0.0109317
chr11	55579419	.	T	C	6429.395	REJECT	NS=2;DP=391;DPB=448.0;AC=2;AN=4;AF=0.5;RO=220;AO=228;PRO=0.0;PAO=0.0;QR=8395;QA=8743;PQR=0.0;PQA=0.0;SRF=90;SRR=130;SAF=114;SAR=114;SRP=18.8028;SAP=3.0103;AB=0.508929;ABP=3.32051;RUN=1;RPP=14.02;RPPR=6.20829;RPL=131.0;RPR=97.0;EPP=3.35316;EPPR=4.94488;DPRA=0.0;ODDS=368.183;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995614;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0435;Dels=0.0;FS=9.7925;HaplotypeScore=3.9216;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0505;QD=17.93;ReadPosRankSum=0.181;SOR=0.7665;ClippingRankSum=-0.476	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:56:2129:56:2146:-162.792,0.0,-161.267:56:50:110:53,56:1893,0,1876:1:.:1:.:.:.:-0.00409698	0/1:129.501:335:164:6266:172:6597:-502.378,0.0,-472.586:171:51:335:164,171:6308,0,5965:.:1:1:.:.:.:-0.0109317
chr11	55579801	.	T	C	4602.895	REJECT	NS=2;DP=285;DPB=326.0;AC=2;AN=4;AF=0.5;RO=158;AO=168;PRO=0.0;PAO=0.0;QR=5910;QA=6269;PQR=0.0;PQA=0.0;SRF=67;SRR=91;SAF=77;SAR=91;SRP=10.9266;SAP=5.54368;AB=0.515337;ABP=3.6764;RUN=1;RPP=3.47562;RPPR=3.50507;RPL=87.0;RPR=81.0;EPP=4.87156;EPPR=6.52863;DPRA=0.0;ODDS=249.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.881;MQMR=60.0;PAIRED=0.994048;PAIREDR=0.993671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.881;Dels=0.0;FS=2.1735;HaplotypeScore=8.7319;MLEAC=1;MLEAF=0.5;MQ=59.965;MQRankSum=-0.492;QD=17.375;ReadPosRankSum=-0.0475;SOR=0.587;ClippingRankSum=0.51	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.545:79:39:1444:42:1548:-117.451,0.0,-108.078:41:52:79:37,41:1318,0,1279:1:.:1:.:.:.:-0.00409698	0/1:121.545:245:119:4466:126:4721:-358.37,0.0,-335.425:126:51:245:119,126:4540,0,4219:.:1:1:.:.:.:-0.0109317
chr11	57014669	.	T	G	4891.755	REJECT	NS=2;DP=316;DPB=365.0;AC=2;AN=4;AF=0.5;RO=187;AO=178;PRO=0.0;PAO=0.0;QR=7161;QA=6845;PQR=0.0;PQA=0.0;SRF=97;SRR=90;SAF=108;SAR=70;SRP=3.5793;SAP=20.6261;AB=0.487671;ABP=3.49219;RUN=1;RPP=8.91475;RPPR=26.5249;RPL=78.0;RPR=100.0;EPP=20.6261;EPPR=20.6724;DPRA=0.0;ODDS=306.039;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.546;Dels=0.0;FS=6.1845;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0945;QD=17.87;ReadPosRankSum=-0.3075;SOR=1.1165;ClippingRankSum=-1.755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:47:1777:50:1910:-145.657,0.0,-133.677:49:52:94:44,48:1698,0,1490:1:.:1:.:.:.:-0.00409698	0/1:129.501:268:140:5384:128:4935:-371.309,0.0,-411.693:128:48:268:140,128:4743,0,5213:.:1:1:.:.:.:-0.0109317
chr11	57014757	.	A	G	4991.66	REJECT	NS=2;DP=299;DPB=346.0;AC=2;AN=4;AF=0.5;RO=167;AO=179;PRO=0.0;PAO=0.0;QR=6370;QA=6904;PQR=0.0;PQA=0.0;SRF=60;SRR=107;SAF=63;SAR=116;SRP=31.7335;SAP=37.0866;AB=0.517341;ABP=3.91403;RUN=1;RPP=17.8709;RPPR=27.0525;RPL=107.0;RPR=72.0;EPP=14.6683;EPPR=8.74455;DPRA=0.0;ODDS=284.38;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988024;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.109;Dels=0.0;FS=0.864;HaplotypeScore=5.8125;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.765;QD=18.29;ReadPosRankSum=0.4775;SOR=0.8055;ClippingRankSum=0.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:44:1672:49:1902:-146.005,0.0,-125.304:48:52:92:44,47:1620,0,1539:1:.:1:.:.:.:-0.00409698	0/1:129.501:253:123:4698:130:5002:-381.418,0.0,-354.081:130:51:253:123,130:4858,0,4477:.:1:1:.:.:.:-0.0109317
chr11	64572018	.	T	C	13893.75	REJECT	NS=2;DP=369;DPB=427.0;AC=4;AN=4;AF=1.0;RO=0;AO=427;PRO=0.0;PAO=0.0;QR=0;QA=16318;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=168;SAR=259;SRP=0.0;SAP=45.1226;AB=0.0;ABP=0.0;RUN=1;RPP=3.25949;RPPR=0.0;RPL=217.0;RPR=210.0;EPP=3.62564;EPPR=0.0;DPRA=0.0;ODDS=76.6772;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997658;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8907;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.275;SOR=1.1525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4471:-402.368,-31.4254,0.0:114:100:114:0,113:4692,340,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:311:0:0:311:11847:-1065.17,-83.8095,0.0:311:100:311:0,311:13226,918,0:.:1:1:.:.:.:-0.0109317
chr11	64572557	.	A	G	12898.7	REJECT	NS=2;DP=339;DPB=389.0;AC=4;AN=4;AF=1.0;RO=0;AO=389;PRO=0.0;PAO=0.0;QR=0;QA=14962;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=212;SAR=177;SRP=0.0;SAP=9.84848;AB=0.0;ABP=0.0;RUN=1;RPP=3.14985;RPPR=0.0;RPL=197.0;RPR=192.0;EPP=9.84848;EPPR=0.0;DPRA=0.0;ODDS=66.7329;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997429;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.535;SOR=0.886	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.8195:98:0:0:100:3862:-347.627,-27.1067,0.0:98:100:98:0,97:4157,291,0:1:.:1:.:.:.:-0.00409698	1/1:127.8195:289:0:0:289:11100:-998.395,-78.2626,0.0:289:100:289:0,289:12421,861,0:.:1:1:.:.:.:-0.0109317
chr11	64573194	.	T	A	3009.7	PASS	SOMATIC;NS=2;DP=464;DPB=464.0;AC=1;AN=3;AF=0.25;RO=348;AO=116;PRO=0.0;PAO=0.0;QR=13390;QA=4452;PQR=0.0;PQA=0.0;SRF=168;SRR=180;SAF=53;SAR=63;SRP=3.90884;SAP=4.88226;AB=0.33526;ABP=84.5723;RUN=1;RPP=3.08518;RPPR=24.0012;RPL=59.0;RPR=57.0;EPP=5.70592;EPPR=12.0207;DPRA=2.9322;ODDS=74.5314;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.958;Dels=0.0;FS=2.469;HaplotypeScore=10.7649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.502;QD=11.34;ReadPosRankSum=-1.432;SOR=0.863	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.611:116:118:4473:0:0:0.0,-31.9426,-402.523:0:0:116:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:119.8055:346:230:8917:116:4452:-306.7,0.0,-708.29:116:34:346:220,109:38.0:0.328:2:3953,0,8943:.:1:1:.:.:1:-0.0109317
chr11	65423082	.	G	A	12144.8	REJECT	NS=2;DP=325;DPB=372.0;AC=4;AN=4;AF=1.0;RO=0;AO=371;PRO=0.0;PAO=0.0;QR=0;QA=14112;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=235;SAR=136;SRP=0.0;SAP=60.3758;AB=0.0;ABP=0.0;RUN=1;RPP=19.4514;RPPR=0.0;RPL=159.0;RPR=212.0;EPP=4.32723;EPPR=0.0;DPRA=0.0;ODDS=62.965;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997305;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7031;MLEAC=2;MLEAF=1.0;MQ=59.985;QD=28.13;SOR=1.3345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:94:3552:-319.757,-25.4703,0.0:93:100:93:0,92:3751,276,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:278:0:0:277:10560:-949.84,-74.9904,0.0:277:100:277:0,277:11739,813,0:.:1:1:.:.:.:-0.0109317
chr11	65429936	.	T	C	2817.71	REJECT	NS=2;DP=515;DPB=586.0;AC=2;AN=4;AF=0.5;RO=451;AO=135;PRO=0.0;PAO=0.0;QR=17292;QA=5143;PQR=0.0;PQA=0.0;SRF=222;SRR=229;SAF=63;SAR=72;SRP=3.24622;SAP=4.31318;AB=0.230375;ABP=373.035;RUN=1;RPP=4.31318;RPPR=7.05954;RPL=63.0;RPR=72.0;EPP=11.5193;EPPR=3.05363;DPRA=0.0;ODDS=168.093;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997783;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.665;Dels=0.0;FS=2.391;HaplotypeScore=7.8122;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3185;QD=10.785;ReadPosRankSum=-0.147;SOR=0.946;ClippingRankSum=0.244	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.437:140:62:2380:79:2980:-229.942,0.0,-176.358:78:56:140:61,78:2693,0,2157:1:.:1:.:.:.:-0.00409698	0/1:120.437:444:389:14912:56:2163:-74.0238,0.0,-1220.64:56:13:444:388,56:1094,0,15283:.:1:1:.:.:.:-0.0109317
chr11	69462910	.	G	A	5055.71	REJECT	NS=2;DP=314;DPB=358.0;AC=2;AN=4;AF=0.5;RO=175;AO=182;PRO=0.0;PAO=0.0;QR=6714;QA=6844;PQR=0.0;PQA=0.0;SRF=57;SRR=118;SAF=56;SAR=126;SRP=49.182;SAP=61.473;AB=0.50838;ABP=3.22866;RUN=1;RPP=15.2278;RPPR=18.2106;RPL=107.0;RPR=75.0;EPP=3.2012;EPPR=4.01538;DPRA=0.0;ODDS=272.36;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994286;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.206;Dels=0.0;FS=3.7305;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.22;QD=17.8;ReadPosRankSum=0.4045;SOR=0.6815;ClippingRankSum=1.343	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:44:1702:42:1582:-119.112,0.0,-129.931:42:49:86:44,42:1498,0,1551:1:.:1:.:.:.:-0.00409698	0/1:129.501:270:131:5012:140:5262:-399.945,0.0,-377.456:140:52:270:130,140:5081,0,4754:.:1:1:.:.:.:-0.0109317
chr11	76207633	.	G	A	13421.05	REJECT	NS=2;DP=357;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15533;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=194;SAR=216;SRP=0.0;SAP=5.5737;AB=0.0;ABP=0.0;RUN=1;RPP=5.5737;RPPR=0.0;RPL=194.0;RPR=216.0;EPP=3.20097;EPPR=0.0;DPRA=0.0;ODDS=70.4248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995122;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.935;SOR=0.8355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:106:3990:-359.127,-28.71,0.0:106:100:106:0,106:4232,318,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:304:0:0:304:11543:-1038.25,-82.3095,0.0:304:100:304:0,304:12944,903,0:.:1:1:.:.:.:-0.0101778
chr11	76227182	.	G	A	10425.099999999999	REJECT	NS=2;DP=282;DPB=324.0;AC=4;AN=4;AF=1.0;RO=0;AO=323;PRO=0.0;PAO=0.0;QR=0;QA=12203;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=236;SAR=87;SRP=0.0;SAP=152.264;AB=0.0;ABP=0.0;RUN=1;RPP=49.3238;RPPR=0.0;RPL=120.0;RPR=203.0;EPP=3.01702;EPPR=0.0;DPRA=0.0;ODDS=56.0585;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996904;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.821;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.94;SOR=2.07	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.328:83:0:0:83:3084:-277.648,-22.4708,0.0:83:100:83:0,83:3341,248,0:1:.:1:.:.:.:-0.00409698	1/1:124.328:241:0:0:240:9119:-820.275,-64.9713,0.0:240:100:240:0,240:10141,704,0:.:1:1:.:.:.:-0.0101778
chr11	76936833	.	C	T	10851.0	REJECT	NS=2;DP=380;DPB=432.0;AC=2;AN=4;AF=0.5;RO=79;AO=353;PRO=0.0;PAO=0.0;QR=2974;QA=13491;PQR=0.0;PQA=0.0;SRF=40;SRR=39;SAF=176;SAR=177;SRP=3.03779;SAP=3.01645;AB=0.81713;ABP=380.384;RUN=1;RPP=6.85497;RPPR=6.33623;RPL=189.0;RPR=164.0;EPP=49.5709;EPPR=5.23675;DPRA=0.0;ODDS=38.3262;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997167;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.166;Dels=0.0;FS=2.1425;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.854;QD=24.325;ReadPosRankSum=0.7695;SOR=0.487;ClippingRankSum=0.039	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:49:1799:55:2047:-156.108,0.0,-133.761:53:53:101:47,52:1805,0,1594:1:.:1:.:.:.:-0.00409698	0/1:116.1005:328:30:1175:298:11444:-940.485,0.0,-16.835:298:91:328:30,298:11844,0,337:.:1:1:.:.:.:-0.0101778
chr11	76938121	.	G	A	14748.15	REJECT	NS=2;DP=389;DPB=438.0;AC=4;AN=4;AF=1.0;RO=0;AO=438;PRO=0.0;PAO=0.0;QR=0;QA=16758;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=237;SRP=0.0;SAP=9.43548;AB=0.0;ABP=0.0;RUN=1;RPP=19.688;RPPR=0.0;RPL=248.0;RPR=190.0;EPP=18.5576;EPPR=0.0;DPRA=0.0;ODDS=65.4815;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997717;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8793;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.135;SOR=1.009	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:98:3763:-338.72,-26.5632,0.0:96:100:96:0,95:3892,285,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:340:0:0:340:12995:-1168.76,-92.0409,0.0:340:100:340:0,340:14531,1008,0:.:1:1:.:.:.:-0.0101778
chr11	77051683	.	G	C	4006.795	REJECT	NS=2;DP=267;DPB=311.0;AC=2;AN=4;AF=0.5;RO=161;AO=150;PRO=0.0;PAO=0.0;QR=6058;QA=5811;PQR=0.0;PQA=0.0;SRF=102;SRR=59;SAF=92;SAR=58;SRP=27.9485;SAP=19.7451;AB=0.482315;ABP=3.85515;RUN=1;RPP=14.3599;RPPR=27.9485;RPL=61.0;RPR=89.0;EPP=8.80089;EPPR=4.64228;DPRA=0.0;ODDS=240.837;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987578;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.8425;Dels=0.0;FS=1.2585;HaplotypeScore=6.8656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.094;QD=17.735;ReadPosRankSum=-0.0245;SOR=0.681;ClippingRankSum=-1.561	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.262:86:38:1427:49:1886:-146.207,0.0,-104.896:48:56:86:38,48:1644,0,1228:1:.:1:.:.:.:-0.00409698	0/1:119.262:223:123:4631:101:3925:-292.425,0.0,-355.922:101:45:223:122,101:3748,0,4437:.:1:1:.:.:.:-0.0101778
chr11	77051820	.	C	T	2104.32	PASS	SOMATIC;NS=2;DP=309;DPB=309.0;AC=1;AN=3;AF=0.25;RO=228;AO=81;PRO=0.0;PAO=0.0;QR=8762;QA=3138;PQR=0.0;PQA=0.0;SRF=86;SRR=142;SAF=31;SAR=50;SRP=32.8776;SAP=12.6881;AB=0.347639;ABP=49.9905;RUN=1;RPP=28.7731;RPPR=58.0209;RPL=56.0;RPR=25.0;EPP=4.32391;EPPR=3.61984;DPRA=3.06579;ODDS=48.4028;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.565;Dels=0.0;FS=0.513;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.253;QD=12.21;ReadPosRankSum=-0.676;SOR=0.733	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.329:75:76:2909:0:0:0.0,-20.5951,-261.916:0:0:75:74,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:119.1645:231:152:5853:81:3138:-219.171,0.0,-463.378:81:35:231:144,79:39.0:0.356:2:2862,0,5742:.:1:1:.:.:1:-0.0101778
chr11	77268460	.	G	A	1810.875	REJECT	NS=2;DP=369;DPB=419.0;AC=2;AN=4;AF=0.5;RO=322;AO=97;PRO=0.0;PAO=0.0;QR=12196;QA=3682;PQR=0.0;PQA=0.0;SRF=153;SRR=169;SAF=44;SAR=53;SRP=4.73669;SAP=4.82359;AB=0.231504;ABP=265.375;RUN=1;RPP=27.389;RPPR=75.9502;RPL=65.0;RPR=32.0;EPP=12.8827;EPPR=7.56904;DPRA=0.0;ODDS=204.838;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979381;PAIREDR=0.993789;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.909;Dels=0.0;FS=0.9735;HaplotypeScore=7.8986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6555;QD=9.765;ReadPosRankSum=-1.2045;SOR=0.722;ClippingRankSum=-0.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:98:54:2067:45:1690:-125.321,0.0,-159.22:45:45:98:52,45:1563,0,1801:1:.:1:.:.:.:-0.00409698	0/1:129.501:319:268:10129:52:1992:-92.5803,0.0,-824.389:51:16:319:268,51:1262,0,10291:.:1:1:.:.:.:-0.0101778
chr11	77268856	.	C	T	2258.975	REJECT	NS=2;DP=362;DPB=421.0;AC=2;AN=4;AF=0.5;RO=314;AO=107;PRO=0.0;PAO=0.0;QR=12049;QA=4021;PQR=0.0;PQA=0.0;SRF=155;SRR=159;SAF=52;SAR=55;SRP=3.12095;SAP=3.19295;AB=0.254157;ABP=224.021;RUN=1;RPP=3.19295;RPPR=3.25926;RPL=55.0;RPR=52.0;EPP=4.65412;EPPR=11.9728;DPRA=0.0;ODDS=151.6;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=0.996815;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.774;Dels=0.0;FS=3.5775;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0435;QD=10.525;ReadPosRankSum=-0.311;SOR=0.8065;ClippingRankSum=0.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:53:2034:63:2371:-181.964,0.0,-151.63:63:54:116:53,63:2123,0,1827:1:.:1:.:.:.:-0.00409698	0/1:129.501:304:261:10015:44:1650:-66.1961,0.0,-818.21:44:14:304:260,44:936,0,10267:.:1:1:.:.:.:-0.0101778
chr11	79506686	.	T	C	4710.835	REJECT	NS=2;DP=322;DPB=369.0;AC=2;AN=4;AF=0.5;RO=185;AO=184;PRO=0.0;PAO=0.0;QR=6979;QA=6855;PQR=0.0;PQA=0.0;SRF=116;SRR=69;SAF=119;SAR=65;SRP=28.9389;SAP=37.4234;AB=0.498645;ABP=3.01618;RUN=1;RPP=10.9881;RPPR=31.1925;RPL=79.0;RPR=105.0;EPP=15.095;EPPR=26.7791;DPRA=0.0;ODDS=207.955;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994565;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.315;Dels=0.0;FS=3.6205;HaplotypeScore=5.8758;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.663;QD=19.175;ReadPosRankSum=0.6725;SOR=0.982;ClippingRankSum=0.619	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:34:1293:59:2210:-173.745,0.0,-91.2111:58:63:92:34,57:2100,0,1141:1:.:1:.:.:.:-0.00409698	0/1:129.501:276:151:5686:125:4645:-343.116,0.0,-437.51:125:45:276:151,125:4396,0,5531:.:1:1:.:.:.:-0.0101778
chr11	92086994	.	C	T	5137.285	REJECT	NS=2;DP=335;DPB=386.0;AC=2;AN=4;AF=0.5;RO=198;AO=188;PRO=0.0;PAO=0.0;QR=7607;QA=7174;PQR=0.0;PQA=0.0;SRF=92;SRR=106;SAF=88;SAR=100;SRP=5.15984;SAP=4.67356;AB=0.487047;ABP=3.57286;RUN=1;RPP=8.60069;RPPR=4.107;RPL=105.0;RPR=83.0;EPP=5.27418;EPPR=10.424;DPRA=0.0;ODDS=325.873;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989362;PAIREDR=0.989899;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.402;Dels=0.0;FS=1.2645;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9275;QD=17.395;ReadPosRankSum=-0.6705;SOR=0.762;ClippingRankSum=1.977	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.3175:100:51:1951:50:1889:-142.668,0.0,-148.25:50:50:100:49,50:1769,0,1758:1:.:1:.:.:.:-0.00409698	0/1:121.3175:284:147:5656:138:5285:-398.169,0.0,-431.576:137:48:284:147,137:4964,0,5482:.:1:1:.:.:.:-0.0101778
chr11	92088177	.	C	T	3854.46	REJECT	NS=2;DP=300;DPB=340.0;AC=2;AN=4;AF=0.5;RO=193;AO=147;PRO=0.0;PAO=0.0;QR=7285;QA=5369;PQR=0.0;PQA=0.0;SRF=86;SRR=107;SAF=69;SAR=78;SRP=7.97206;SAP=4.20683;AB=0.432353;ABP=16.5245;RUN=1;RPP=3.02507;RPPR=3.29158;RPL=74.0;RPR=73.0;EPP=3.02507;EPPR=3.29158;DPRA=0.0;ODDS=186.631;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986395;PAIREDR=0.994819;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.564;Dels=0.0;FS=0.955;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2155;QD=13.575;ReadPosRankSum=-0.329;SOR=0.822;ClippingRankSum=-0.693	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:49:1825:31:1143:-81.2635,0.0,-142.643:30:38:79:48,30:992,0,1741:1:.:1:.:.:.:-0.00409698	0/1:129.501:260:144:5460:116:4226:-310.153,0.0,-420.777:116:45:260:144,116:3916,0,5359:.:1:1:.:.:.:-0.0101778
chr11	92292532	.	A	C	1574.53	REJECT	NS=1;DP=185;DPB=185.0;AC=1;AN=4;AF=0.5;RO=102;AO=77;PRO=0.0;PAO=0.0;QR=3408;QA=2606;PQR=0.0;PQA=0.0;SRF=33;SRR=69;SAF=21;SAR=56;SRP=30.6008;SAP=37.5565;AB=0.416216;ABP=14.2902;RUN=1;RPP=145.171;RPPR=132.532;RPL=74.0;RPR=3.0;EPP=33.7211;EPPR=37.0726;DPRA=0.0;ODDS=362.549;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=58.3896;MQMR=59.4804;PAIRED=0.935065;PAIREDR=0.990196;technology.ILLUMINA=1.0;BaseQRankSum=1.139;FS=5.737;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.091;QD=13.44;ReadPosRankSum=-1.194;SOR=1.246;ClippingRankSum=1.539	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:162:102:3408:77:2606:-186.518,0.0,-258.33:68:43:159:80,60:1990,0,2749:1:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0101778
chr11	92292549	.	C	CT	106.323	REJECT	NS=1;DP=39;DPB=94.68;AC=1;AN=4;AF=0.5;RO=14;AO=6;PRO=23.6333;PAO=24.6333;QR=478;QA=157;PQR=842.233;PQA=819.233;SRF=3;SRR=11;SAF=2;SAR=4;SRP=12.937;SAP=4.45795;AB=0.153846;ABP=43.6001;RUN=1;RPP=4.45795;RPPR=3.0103;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=8.59409;DPRA=0.0;ODDS=24.4819;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=53.1667;MQMR=51.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:106.3:39:14:478:6:157:-14.5226,0.0,-42.8789:6:18:33:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	92292549	.	C	CTT	106.323	REJECT	NS=1;DP=39;DPB=94.68;AC=1;AN=3;AF=0.0;RO=14;AO=2;PRO=23.6333;PAO=20.6333;QR=478;QA=17;PQR=842.233;PQA=734.233;SRF=3;SRR=11;SAF=0;SAR=2;SRP=12.937;SAP=7.35324;AB=0.0512821;ABP=71.2168;RUN=1;RPP=3.0103;RPPR=3.0103;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=8.59409;DPRA=0.0;ODDS=24.4819;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=5;MEANALT=11.0;LEN=2;MQM=50.0;MQMR=51.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.3:39:14:478:2:17:-14.5226,-18.0882,-63.4743:2:6:33:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	92292549	.	CT	C	106.323	REJECT	NS=1;DP=39;DPB=94.68;AC=1;AN=3;AF=0.0;RO=14;AO=7;PRO=23.6333;PAO=17.3;QR=478;QA=154;PQR=842.233;PQA=585.567;SRF=3;SRR=11;SAF=1;SAR=6;SRP=12.937;SAP=10.7656;AB=0.179487;ABP=37.8095;RUN=1;RPP=5.80219;RPPR=3.0103;RPL=5.0;RPR=2.0;EPP=10.7656;EPPR=8.59409;DPRA=0.0;ODDS=24.4819;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=55.2857;MQMR=51.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.3:39:14:478:7:154:-14.5226,-15.4403,-241.545:7:21:33:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	92292549	.	CTT	C	106.323	REJECT	NS=1;DP=39;DPB=94.68;AC=1;AN=3;AF=0.0;RO=14;AO=2;PRO=23.6333;PAO=14.1;QR=478;QA=29;PQR=842.233;PQA=497.367;SRF=3;SRR=11;SAF=0;SAR=2;SRP=12.937;SAP=7.35324;AB=0.0512821;ABP=71.2168;RUN=1;RPP=3.0103;RPPR=3.0103;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=8.59409;DPRA=0.0;ODDS=24.4819;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=5;MEANALT=11.0;LEN=2;MQM=60.0;MQMR=51.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.3:39:14:478:2:29:-14.5226,-33.2441,-273.708:2:6:33:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	92292550	.	T	C	106.323	REJECT	NS=1;DP=39;DPB=94.68;AC=1;AN=3;AF=0.0;RO=14;AO=2;PRO=23.6333;PAO=3.7;QR=478;QA=17;PQR=842.233;PQA=108.367;SRF=3;SRR=11;SAF=0;SAR=2;SRP=12.937;SAP=7.35324;AB=0.0512821;ABP=71.2168;RUN=1;RPP=7.35324;RPPR=3.0103;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=8.59409;DPRA=0.0;ODDS=24.4819;GTI=0;TYPE=snp;CIGAR=1M1X23M;NUMALT=5;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=51.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.3:39:14:478:2:17:-14.5226,-106.587,-1107.27:2:6:33:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	92292618	.	A	G	391.706	REJECT	NS=1;DP=65;DPB=65.0;AC=1;AN=4;AF=0.5;RO=39;AO=26;PRO=0.0;PAO=0.0;QR=1256;QA=793;PQR=0.0;PQA=0.0;SRF=2;SRR=37;SAF=0;SAR=26;SRP=71.2168;SAP=59.4686;AB=0.4;ABP=8.65613;RUN=1;RPP=4.34659;RPPR=3.06598;RPL=15.0;RPR=11.0;EPP=4.34659;EPPR=3.51141;DPRA=0.0;ODDS=90.1937;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.1538;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.594;FS=2.66;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.164;QD=8.76;ReadPosRankSum=1.147;SOR=1.347;ClippingRankSum=0.266	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:57:39:1256:26:793:-50.875,0.0,-95.6265:21:37:57:33,17:466,0,1068:1:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0101778
chr11	92495036	.	T	C	4588.33	REJECT	NS=2;DP=287;DPB=329.0;AC=2;AN=4;AF=0.5;RO=162;AO=167;PRO=0.0;PAO=0.0;QR=6185;QA=6365;PQR=0.0;PQA=0.0;SRF=109;SRR=53;SAF=114;SAR=53;SRP=45.0457;SAP=51.3938;AB=0.507599;ABP=3.17531;RUN=1;RPP=7.70432;RPPR=4.35072;RPL=74.0;RPR=93.0;EPP=15.506;EPPR=6.44176;DPRA=0.0;ODDS=248.532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988024;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.136;Dels=0.0;FS=0.435;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.244;QD=17.92;ReadPosRankSum=0.3255;SOR=0.803;ClippingRankSum=0.169	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:38:1446:44:1667:-127.856,0.0,-108.358:43:53:81:38,42:1460,0,1340:1:.:1:.:.:.:-0.00409698	0/1:129.501:246:124:4739:123:4698:-355.703,0.0,-359.406:122:50:246:124,122:4495,0,4562:.:1:1:.:.:.:-0.0101778
chr11	92531356	.	A	G	11992.4	REJECT	NS=2;DP=314;DPB=356.0;AC=4;AN=4;AF=1.0;RO=0;AO=356;PRO=0.0;PAO=0.0;QR=0;QA=13671;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=162;SAR=194;SRP=0.0;SAP=9.25633;AB=0.0;ABP=0.0;RUN=1;RPP=5.96253;RPPR=0.0;RPL=167.0;RPR=189.0;EPP=4.20583;EPPR=0.0;DPRA=0.0;ODDS=56.1012;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9127;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.81;SOR=0.831	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3235:83:0:0:83:3156:-284.142,-22.4894,0.0:83:100:83:0,83:3405,249,0:1:.:1:.:.:.:-0.00409698	1/1:125.3235:273:0:0:273:10515:-945.813,-73.9434,0.0:273:100:273:0,273:11765,813,0:.:1:1:.:.:.:-0.0101778
chr11	92532677	.	T	C	13503.25	REJECT	NS=2;DP=358;DPB=413.0;AC=4;AN=4;AF=1.0;RO=0;AO=412;PRO=0.0;PAO=0.0;QR=0;QA=15687;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=199;SAR=213;SRP=0.0;SAP=4.04333;AB=0.0;ABP=0.0;RUN=1;RPP=9.10307;RPPR=0.0;RPL=223.0;RPR=189.0;EPP=6.04614;EPPR=0.0;DPRA=0.0;ODDS=71.6175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987864;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.89;SOR=0.7685	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.5:108:0:0:108:4058:-365.205,-29.228,0.0:108:100:108:0,108:4389,323,0:1:.:1:.:.:.:-0.00409698	1/1:126.5:304:0:0:304:11629:-1046.0,-82.3317,0.0:303:100:303:0,303:12975,903,0:.:1:1:.:.:.:-0.0101778
chr11	92534442	.	A	G	14281.75	REJECT	NS=2;DP=380;DPB=444.0;AC=4;AN=4;AF=1.0;RO=1;AO=442;PRO=0.0;PAO=0.0;QR=40;QA=16955;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=211;SAR=231;SRP=5.18177;SAP=4.97543;AB=0.0;ABP=0.0;RUN=1;RPP=3.32472;RPPR=5.18177;RPL=217.0;RPR=225.0;EPP=15.2924;EPPR=5.18177;DPRA=0.0;ODDS=81.0793;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984163;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.213;Dels=0.0;FS=1.6125;HaplotypeScore=1.9574;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.454;QD=30.92;ReadPosRankSum=0.06;SOR=0.5755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:122:0:0:123:4777:-429.889,-33.3372,0.0:122:100:122:0,121:5108,364,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:318:1:40:319:12178:-1091.69,-83.024,0.0:317:100:318:1,316:13424,891,0:.:1:1:.:.:.:-0.0101778
chr11	92564767	.	T	G	5740.535	REJECT	NS=2;DP=154;DPB=178.0;AC=4;AN=4;AF=1.0;RO=1;AO=177;PRO=0.0;PAO=0.0;QR=16;QA=6814;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=128;SAR=49;SRP=5.18177;SAP=79.5762;AB=0.0;ABP=0.0;RUN=1;RPP=75.7485;RPPR=5.18177;RPL=50.0;RPR=127.0;EPP=4.49475;EPPR=5.18177;DPRA=0.0;ODDS=33.7006;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.653;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.626;QD=29.0;ReadPosRankSum=0.331;SOR=1.3655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.2525:47:0:0:47:1821:-164.127,-12.7609,0.0:47:100:47:0,47:1968,141,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:131:1:16:130:4993:-447.879,-34.0521,0.0:130:99:131:1,130:5572,385,0:.:1:1:.:.:.:-0.0101778
chr11	92570812	.	TC	AA	1449.275	REJECT	NS=2;DP=227;DPB=259.5;AC=2;AN=4;AF=0.5;RO=192;AO=65;PRO=3.0;PAO=0.0;QR=7305;QA=2413;PQR=0.0;PQA=0.0;SRF=132;SRR=60;SAF=48;SAR=17;SRP=61.6401;SAP=35.1147;AB=0.251938;ABP=140.907;RUN=1;RPP=3.04371;RPPR=33.5919;RPL=33.0;RPR=32.0;EPP=15.0703;EPPR=5.9056;DPRA=0.0;ODDS=169.42;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989583;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=0.35;Dels=0.0;FS=0.958;HaplotypeScore=3.9944;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4845;QD=12.45;ReadPosRankSum=1.277;SOR=0.9515;ClippingRankSum=-0.312	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.975:61:28:1072:32:1208:-92.5511,0.0,-80.2928:33:54:60:27,34:1341,0,2071:1:.:1:.:.:.:-0.00409698	0/1:119.975:197:164:6233:33:1205:-75.8434,0.0,-506.611:33:17:197:164,33:764,0,6331:.:1:1:.:.:.:-0.0101778
chr11	92573911	.	G	T	4540.155000000001	REJECT	NS=2;DP=289;DPB=330.0;AC=2;AN=4;AF=0.5;RO=168;AO=161;PRO=0.0;PAO=0.0;QR=6464;QA=6235;PQR=0.0;PQA=0.0;SRF=44;SRR=124;SAF=51;SAR=110;SRP=85.7331;SAP=49.96;AB=0.487879;ABP=3.43143;RUN=1;RPP=25.6826;RPPR=3.83753;RPL=101.0;RPR=60.0;EPP=14.3532;EPPR=10.4553;DPRA=0.0;ODDS=256.701;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993789;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.274;Dels=0.0;FS=3.4145;HaplotypeScore=4.8152;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.679;QD=18.19;ReadPosRankSum=0.1575;SOR=0.46;ClippingRankSum=0.701	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:40:1500:39:1526:-115.993,0.0,-113.638:39:49:79:40,39:1474,0,1432:1:.:1:.:.:.:-0.00409698	0/1:129.501:249:128:4964:122:4709:-355.854,0.0,-378.798:121:49:249:128,121:4531,0,4825:.:1:1:.:.:.:-0.0101778
chr11	92590448	.	A	G	8807.18	REJECT	NS=2;DP=377;DPB=433.0;AC=3;AN=4;AF=0.75;RO=120;AO=313;PRO=0.0;PAO=0.0;QR=4622;QA=12048;PQR=0.0;PQA=0.0;SRF=61;SRR=59;SAF=153;SAR=160;SRP=3.08268;SAP=3.35024;AB=0.628483;ABP=49.3238;RUN=1;RPP=3.01724;RPPR=3.08268;RPL=157.0;RPR=156.0;EPP=17.059;EPPR=10.2485;DPRA=0.0;ODDS=69.6237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996805;PAIREDR=0.991667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.611;Dels=0.0;FS=0.4435;HaplotypeScore=6.8986;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.142;QD=27.935;ReadPosRankSum=-1.193;SOR=0.822	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.704:108:0:0:110:4236:-381.246,-29.8112,0.0:108:100:108:0,107:4455,321,0:1:.:1:.:.:.:-0.00409698	0/1:119.704:322:120:4622:203:7812:-615.166,0.0,-328.252:203:63:322:119,203:7752,0,4140:.:1:1:.:.:.:-0.0101778
chr11	92623877	.	G	A	1541.565	REJECT	NS=2;DP=341;DPB=382.0;AC=2;AN=4;AF=0.5;RO=297;AO=85;PRO=0.0;PAO=0.0;QR=11385;QA=3246;PQR=0.0;PQA=0.0;SRF=172;SRR=125;SAF=52;SAR=33;SRP=19.1611;SAP=12.2327;AB=0.222513;ABP=258.494;RUN=1;RPP=21.6339;RPPR=4.24592;RPL=29.0;RPR=56.0;EPP=5.07959;EPPR=3.89497;DPRA=0.0;ODDS=174.228;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976471;PAIREDR=0.996633;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6805;Dels=0.0;FS=8.754;HaplotypeScore=5.8654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.278;QD=9.925;ReadPosRankSum=-0.5415;SOR=1.0425;ClippingRankSum=-0.025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:41:1518:39:1462:-109.972,0.0,-115.015:38:49:79:40,38:1310,0,1347:1:.:1:.:.:.:-0.00409698	0/1:129.501:301:256:9867:46:1784:-78.6531,0.0,-805.701:45:15:301:256,45:1057,0,10166:.:1:1:.:.:.:-0.0101778
chr11	94197260	.	A	G	1796.8	PASS	SOMATIC;NS=2;DP=288;DPB=288.0;AC=1;AN=3;AF=0.25;RO=213;AO=73;PRO=0.0;PAO=0.0;QR=8276;QA=2783;PQR=0.0;PQA=0.0;SRF=147;SRR=66;SAF=51;SAR=22;SRP=69.8978;SAP=28.0269;AB=0.341121;ABP=49.9303;RUN=1;RPP=53.0137;RPPR=51.5473;RPL=16.0;RPR=57.0;EPP=5.41974;EPPR=3.26517;DPRA=2.89189;ODDS=46.5771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981221;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.76;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.987;QD=11.48;ReadPosRankSum=-1.312;SOR=0.729	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.893:73:73:2816:0:0:0.0,-19.8022,-253.588:0:0:72:72,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:120.4465:212:140:5460:73:2783:-192.644,0.0,-433.479:73:35:211:134,72:38.0:0.351:2:2463,0,5410:.:1:1:.:.:1:-0.0101778
chr11	94212048	.	C	T	2367.34	PASS	SOMATIC;NS=2;DP=315;DPB=315.0;AC=1;AN=3;AF=0.25;RO=226;AO=89;PRO=0.0;PAO=0.0;QR=8706;QA=3462;PQR=0.0;PQA=0.0;SRF=60;SRR=166;SAF=23;SAR=66;SRP=110.969;SAP=48.1232;AB=0.383621;ABP=30.3035;RUN=1;RPP=23.5295;RPPR=28.9911;RPL=59.0;RPR=30.0;EPP=3.22989;EPPR=3.62523;DPRA=2.79518;ODDS=52.7942;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986726;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.586;Dels=0.0;FS=0.56;HaplotypeScore=3.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.191;QD=13.57;ReadPosRankSum=-0.964;SOR=0.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:80:83:3215:0:0:0.0,-22.5023,-289.447:0:0:80:78,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:231:143:5491:89:3462:-248.567,0.0,-431.104:89:38:231:138,86:39.0:0.382:2:3162,0,5404:.:1:1:.:.:1:-0.0101778
chr11	94212930	.	T	TA	341.053	REJECT	NS=2;DP=248;DPB=291.529;AC=2;AN=3;AF=0.25;RO=188;AO=33;PRO=41.0;PAO=24.0;QR=7134;QA=1144;PQR=1510.67;PQA=874.667;SRF=38;SRR=150;SAF=7;SAR=26;SRP=147.898;SAP=26.7649;AB=0.133065;ABP=293.042;RUN=1;RPP=26.7649;RPPR=34.2425;RPL=26.0;RPR=7.0;EPP=4.65535;EPPR=3.19511;DPRA=0.0;ODDS=6.86127;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=59.9394;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994681;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:27.3969:73:55:2112:7:237:-4.87095,-1.97058,-193.685:7:10:69:.:.:1:.:.:.:-0.00409698	0/1:142.064:175:133:5022:26:907:-38.1529,0.0,-445.672:26:15:168:.:.:1:.:.:.:-0.0101778
chr11	94212930	.	TA	T	341.053	REJECT	NS=2;DP=248;DPB=291.529;AC=2;AN=3;AF=0.25;RO=188;AO=16;PRO=41.0;PAO=19.0;QR=7134;QA=614;PQR=1510.67;PQA=687.667;SRF=38;SRR=150;SAF=4;SAR=12;SRP=147.898;SAP=11.6962;AB=0.0645161;ABP=411.527;RUN=1;RPP=7.89611;RPPR=34.2425;RPL=11.0;RPR=5.0;EPP=3.55317;EPPR=3.19511;DPRA=0.0;ODDS=6.86127;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994681;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:27.3969:73:55:2112:7:271:-4.87095,0.0,-204.485:7:10:69:.:.:1:.:.:.:-0.00409698	./1:142.064:175:133:5022:9:343:-38.1529,-52.276,-540.386:9:5:168:.:.:1:.:.:.:-0.0101778
chr11	94225807	.	C	T	2533.07	PASS	SOMATIC;NS=2;DP=428;DPB=428.0;AC=1;AN=3;AF=0.25;RO=325;AO=103;PRO=0.0;PAO=0.0;QR=12314;QA=3927;PQR=0.0;PQA=0.0;SRF=162;SRR=163;SAF=65;SAR=38;SRP=3.01698;SAP=18.3793;AB=0.30117;ABP=120.448;RUN=1;RPP=9.10307;RPPR=5.4223;RPL=43.0;RPR=60.0;EPP=3.03138;EPPR=23.2217;DPRA=3.97674;ODDS=54.633;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.996923;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.142;Dels=0.0;FS=20.19;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.606;QD=9.74;ReadPosRankSum=0.227;SOR=1.308	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.192:83:86:3271:0:0:0.0,-23.3008,-294.473:0:0:83:80,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:120.596:342:239:9043:103:3927:-260.647,0.0,-720.749:103:30:342:227,98:38.0:0.304:2:3361,0,9026:.:1:1:.:.:1:-0.0101778
chr11	94225920	.	C	T	2601.16	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=291;AO=102;PRO=0.0;PAO=0.0;QR=11142;QA=3823;PQR=0.0;PQA=0.0;SRF=153;SRR=138;SAF=53;SAR=49;SRP=4.68927;SAP=3.35092;AB=0.352941;ABP=57.2971;RUN=1;RPP=3.35092;RPPR=4.2714;RPL=53.0;RPR=49.0;EPP=5.13919;EPPR=3.01776;DPRA=2.77885;ODDS=65.8276;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996564;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.185;Dels=0.0;FS=0.0;HaplotypeScore=3.964;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.927;QD=11.72;ReadPosRankSum=-0.515;SOR=0.696	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.087:101:104:3913:0:0:0.0,-28.1626,-352.196:0:0:101:98,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:120.0435:289:187:7229:102:3823:-265.58,0.0,-572.001:102:35:289:179,101:37.0:0.368:2:3414,0,7260:.:1:1:.:.:1:-0.0101778
chr11	95724658	.	C	G	1556.46	PASS	SOMATIC;NS=2;DP=219;DPB=219.0;AC=1;AN=3;AF=0.25;RO=155;AO=64;PRO=0.0;PAO=0.0;QR=5875;QA=2424;PQR=0.0;PQA=0.0;SRF=121;SRR=34;SAF=55;SAR=9;SRP=109.048;SAP=74.8046;AB=0.367816;ABP=29.4174;RUN=1;RPP=22.5536;RPPR=55.1396;RPL=20.0;RPR=44.0;EPP=9.66043;EPPR=7.05905;DPRA=3.86667;ODDS=29.0911;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984375;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.334;Dels=0.0;FS=12.311;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.616;QD=12.46;ReadPosRankSum=1.2;SOR=1.722	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:126.05:44:45:1691:0:0:0.0,-12.2081,-152.424:0:0:44:44,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:174:110:4184:64:2424:-170.983,0.0,-329.303:64:37:174:107,62:37.0:0.367:2:2197,0,4135:.:1:1:.:.:1:-0.0101778
chr11	95825374	.	TTGCTGCTGC	T	5197.66	REJECT	NS=2;DP=226;DPB=277.537;AC=3;AN=3;AF=1.0;RO=2;AO=193;PRO=123.0;PAO=117.0;QR=66;QA=6128;PQR=4446.0;PQA=4222.0;SRF=2;SRR=0;SAF=120;SAR=73;SRP=7.35324;SAP=27.8641;AB=0.0;ABP=0.0;RUN=1;RPP=3.56161;RPPR=3.0103;RPL=100.0;RPR=93.0;EPP=3.29158;EPPR=3.0103;DPRA=0.0;ODDS=13.7531;GTI=0;TYPE=del;CIGAR=1M9D31M;NUMALT=1;MEANALT=10.0;LEN=9;MQM=65.2176;MQMR=50.0;PAIRED=0.989637;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.276;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=63.31;MQRankSum=1.496;QD=20.16;RPA=13;RU=TGC;ReadPosRankSum=-0.787;SOR=0.97;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:79.3644:53:0:0:50:1618:-135.433,-4.09782,0.0:51:100:51:0,52:2324,161,0:1:.:1:.:.:.:-0.00409698	./1:129.501:212:2:66:143:4510:-389.433,-23.8771,0.0:150:94:160:1,157:12723,840,355:.:1:1:.:.:.:-0.0101778
chr11	95825374	.	TTGCTGCTGCTGC	T	12685.7	PASS	SOMATIC;DP=253;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.276;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=63.38;MQRankSum=1.496;QD=14.33;RPA=13;RU=TGC;ReadPosRankSum=-0.787;SOR=0.46;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00409698	./1:1,18:252:99.0:12723,6993,2147483647:18:10:176:.:1:.:.:.:.:-0.0101778
chr11	95825797	.	A	G	6277.735000000001	REJECT	NS=2;DP=268;DPB=301.0;AC=3;AN=4;AF=0.75;RO=85;AO=216;PRO=0.0;PAO=0.0;QR=3224;QA=8310;PQR=0.0;PQA=0.0;SRF=44;SRR=41;SAF=88;SAR=128;SRP=3.24022;SAP=19.0953;AB=0.638298;ABP=42.0506;RUN=1;RPP=3.05051;RPPR=12.2327;RPL=109.0;RPR=107.0;EPP=9.8062;EPPR=3.64897;DPRA=0.0;ODDS=42.1591;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99537;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.439;Dels=0.0;FS=4.3505;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.315;QD=29.475;ReadPosRankSum=-0.872;SOR=1.055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:64:0:0:66:2486:-223.892,-17.8835,0.0:64:100:64:0,62:2593,186,0:1:.:1:.:.:.:-0.00409698	0/1:129.501:235:85:3224:150:5824:-460.242,0.0,-226.361:150:64:235:85,150:5822,0,2891:.:1:1:.:.:.:-0.0101778
chr11	102080325	.	GA	G	3184.8900000000003	REJECT	NS=2;DP=169;DPB=216.69;AC=2;AN=2;AF=0.5;RO=8;AO=53;PRO=30.5833;PAO=43.5833;QR=302;QA=1639;PQR=1089.83;PQA=1459.83;SRF=0;SRR=8;SAF=11;SAR=42;SRP=20.3821;SAP=42.3836;AB=0.313609;ABP=54.0078;RUN=1;RPP=21.0786;RPPR=4.09604;RPL=37.0;RPR=16.0;EPP=3.37904;EPPR=4.09604;DPRA=0.0;ODDS=95.3717;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.623;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.4165;QD=16.15;RPA=15;RU=A;ReadPosRankSum=-0.1255;SOR=1.008;STR;ClippingRankSum=-0.866	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:117.757:59:0:0:24:722:-134.973,-58.4412,-53.1685:27:48:56:1,30:1492,607,464:1:.:1:.:.:.:-0.00409698	./1:117.757:165:8:302:29:917:-218.429,-112.736,-146.705:36:29:127:15,44:3066,1550,2147483647:.:1:1:.:.:.:-0.0101778
chr11	102080325	.	GAA	G	3184.8900000000003	REJECT	NS=2;DP=169;DPB=216.69;AC=2;AN=2;AF=0.5;RO=8;AO=73;PRO=30.5833;PAO=37.5833;QR=302;QA=2203;PQR=1089.83;PQA=1287.33;SRF=0;SRR=8;SAF=12;SAR=61;SRP=20.3821;SAP=74.4309;AB=0.431953;ABP=9.80739;RUN=1;RPP=13.7487;RPPR=4.09604;RPL=46.0;RPR=27.0;EPP=3.27802;EPPR=4.09604;DPRA=0.0;ODDS=95.3717;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.623;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.4165;QD=16.15;RPA=15;RU=A;ReadPosRankSum=-0.1255;SOR=1.008;STR;ClippingRankSum=-0.866	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:117.757:59:0:0:21:650:-134.973,-73.7417,-70.3326:26:46:56:1,31:1492,666,610:1:.:1:.:.:.:-0.00409698	./1:117.757:165:8:302:52:1553:-218.429,-64.2383,-103.655:71:55:127:15,90:3066,619,812:.:1:1:.:.:.:-0.0101778
chr11	102080325	.	GAAA	G	3341.05	REJECT	NS=2;DP=169;DPB=216.69;AC=0;AN=4;AF=0.0;RO=8;AO=21;PRO=30.5833;PAO=23.25;QR=302;QA=684;PQR=1089.83;PQA=821.0;SRF=0;SRR=8;SAF=7;SAR=14;SRP=20.3821;SAP=8.07707;AB=0.12426;ABP=210.251;RUN=1;RPP=20.4855;RPPR=4.09604;RPL=17.0;RPR=4.0;EPP=3.94093;EPPR=4.09604;DPRA=0.0;ODDS=95.3717;GTI=0;TYPE=del;CIGAR=1M3D25M;NUMALT=3;MEANALT=7.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.514:56:0:0:5:177:-134.973,-116.971,-137.039:5:10:50:.:.:.:.:.:.:-0.00409698	0/0:136.514:113:8:302:16:507:-218.429,-179.701,-304.307:16:15:105:.:.:.:.:.:.:-0.0101778
chr11	108004798	.	A	C	6513.9400000000005	REJECT	NS=2;DP=416;DPB=475.0;AC=2;AN=4;AF=0.5;RO=235;AO=240;PRO=0.0;PAO=0.0;QR=9001;QA=8943;PQR=0.0;PQA=0.0;SRF=123;SRR=112;SAF=123;SAR=117;SRP=4.12838;SAP=3.33602;AB=0.505263;ABP=3.12459;RUN=1;RPP=3.15506;RPPR=10.7814;RPL=122.0;RPR=118.0;EPP=3.04649;EPPR=21.7219;DPRA=0.0;ODDS=364.894;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995833;PAIREDR=0.995745;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4475;Dels=0.0;FS=1.398;HaplotypeScore=10.6957;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4785;QD=17.51;ReadPosRankSum=-0.1205;SOR=0.5955;ClippingRankSum=0.256	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:56:2133:61:2203:-166.578,0.0,-160.31:61:53:115:53,61:2016,0,1855:1:.:1:.:.:.:-0.00409698	0/1:129.501:357:179:6868:179:6740:-509.251,0.0,-520.823:178:50:357:179,178:6360,0,6633:.:1:1:.:.:.:-0.0101778
chr11	108004927	.	CT	C	519.995	REJECT	NS=2;DP=205;DPB=264.905;AC=2;AN=4;AF=0.5;RO=124;AO=35;PRO=59.5;PAO=38.5;QR=4538;QA=1061;PQR=2052.83;PQA=1299.83;SRF=47;SRR=77;SAF=12;SAR=23;SRP=18.771;SAP=10.5174;AB=0.170732;ABP=196.059;RUN=1;RPP=6.05036;RPPR=20.9425;RPL=21.0;RPR=14.0;EPP=3.07234;EPPR=4.76149;DPRA=0.0;ODDS=30.4167;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983871;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.668;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.723;QD=2.01;ReadPosRankSum=0.044;SOR=0.46;ClippingRankSum=-0.782	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:114.684:47:28:1014:9:278:-13.9187,0.0,-93.4248:10:25:41:33,12:162,0,670:1:.:1:.:.:.:-0.00409698	0/1:135.2:156:96:3524:26:783:-44.0463,0.0,-345.388:26:20:131:.:.:.:.:1:.:.:.:-0.0101778
chr11	108004927	.	CTT	C	519.995	REJECT	NS=2;DP=205;DPB=264.905;AC=2;AN=2;AF=0.0;RO=124;AO=10;PRO=59.5;PAO=31.0;QR=4538;QA=327;PQR=2052.83;PQA=1023.33;SRF=47;SRR=77;SAF=6;SAR=4;SRP=18.771;SAP=3.87889;AB=0.0487805;ABP=365.54;RUN=1;RPP=3.87889;RPPR=20.9425;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=4.76149;DPRA=0.0;ODDS=30.4167;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=2;MEANALT=13.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983871;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.368:49:28:1014:1:38:-13.9187,-21.0753,-135.364:1:3:38:.:.:1:.:.:.:-0.00409698	./1:135.2:156:96:3524:9:289:-44.0463,-54.3473,-428.62:9:7:131:.:.:1:.:.:.:-0.0101778
chr11	108150207	.	CT	C	5180.389999999999	REJECT	NS=2;DP=295;DPB=324.556;AC=2;AN=4;AF=0.5;RO=148;AO=186;PRO=11.5;PAO=10.5;QR=5591;QA=6988;PQR=367.5;PQA=327.5;SRF=99;SRR=49;SAF=131;SAR=55;SRP=39.6906;SAP=70.4427;AB=0.555224;ABP=11.8842;RUN=1;RPP=25.6123;RPPR=28.8919;RPL=71.0;RPR=115.0;EPP=4.17776;EPPR=3.94932;DPRA=0.0;ODDS=191.63;GTI=0;TYPE=del;CIGAR=1M1D7M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.97973;technology.ILLUMINA=1.0;MQ0=0;END=108150208;HOMLEN=1;HOMSEQ=T;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=1.168;FS=3.653;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1795;QD=19.62;RPA=2,1;RU=T;ReadPosRankSum=0.896;SOR=1.0945;STR;ClippingRankSum=2.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.905:76:30:1150:46:1785:-140.108,0.0,-82.9401:46:61:76:31,62:1496,0,893:1:.:1:1:.:.:-0.00409698	0/1:117.905:257:118:4441:140:5203:-397.889,0.0,-333.009:140:55:258:125,187:5171,0,4152:.:1:1:1:.:.:-0.0101778
chr11	108151707	.	T	TA	2470.835	REJECT	NS=2;DP=206;DPB=272.4;AC=2;AN=4;AF=0.5;RO=128;AO=106;PRO=10.5;PAO=10.5;QR=4728;QA=3775;PQR=231.0;PQA=231.0;SRF=100;SRR=28;SAF=89;SAR=17;SRP=90.9549;SAP=109.208;AB=0.438017;ABP=11.086;RUN=1;RPP=21.4473;RPPR=38.9075;RPL=38.0;RPR=68.0;EPP=4.32138;EPPR=3.62103;DPRA=0.0;ODDS=203.962;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=61.4151;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992188;technology.ILLUMINA=1.0;MQ0=0;END=108151707;HOMLEN=2;HOMSEQ=AA;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.314;FS=2.4665;MLEAC=1;MLEAF=0.5;MQ=60.835;MQRankSum=0.367;QD=13.01;RPA=2,3;RU=A;ReadPosRankSum=0.4495;SOR=1.0635;STR;ClippingRankSum=0.299	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.8515:68:33:1225:35:1257:-94.7928,0.0,-91.9071:35:51:68:41,46:840,0,973:1:.:1:1:.:.:-0.00409698	0/1:121.8515:171:95:3503:71:2518:-181.525,0.0,-270.309:75:44:171:100,96:2407,0,2973:.:1:1:1:.:.:-0.0101778
chr11	108163487	.	C	T	2825.75	PASS	SOMATIC;NS=2;DP=438;DPB=438.0;AC=1;AN=3;AF=0.25;RO=326;AO=112;PRO=0.0;PAO=0.0;QR=12380;QA=4238;PQR=0.0;PQA=0.0;SRF=128;SRR=198;SAF=36;SAR=76;SRP=35.649;SAP=34.0313;AB=0.339394;ABP=76.9456;RUN=1;RPP=10.7656;RPPR=11.6429;RPL=66.0;RPR=46.0;EPP=4.25114;EPPR=6.84701;DPRA=3.05556;ODDS=68.3595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978528;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.98;Dels=0.0;FS=6.42;HaplotypeScore=2.9984;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.333;QD=11.35;ReadPosRankSum=-1.184;SOR=1.043	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:103:108:4083:0:0:0.0,-29.2622,-367.506:0:0:103:98,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:328:218:8297:112:4238:-291.859,0.0,-656.912:112:34:328:210,109:38.0:0.341:2:3750,0,8169:.:1:1:.:.:1:-0.0101778
chr11	108175394	.	T	C	3472.215	REJECT	NS=2;DP=282;DPB=324.0;AC=2;AN=4;AF=0.5;RO=192;AO=132;PRO=0.0;PAO=0.0;QR=7423;QA=5048;PQR=0.0;PQA=0.0;SRF=134;SRR=58;SAF=86;SAR=46;SRP=68.3354;SAP=29.3312;AB=0.407407;ABP=27.1378;RUN=1;RPP=12.4858;RPPR=7.5342;RPL=54.0;RPR=78.0;EPP=9.59052;EPPR=7.5342;DPRA=0.0;ODDS=216.076;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992424;PAIREDR=0.994792;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.818;Dels=0.0;FS=4.1605;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7825;QD=14.315;ReadPosRankSum=1.6315;SOR=0.4445;ClippingRankSum=-1.955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0165:80:48:1854:33:1294:-94.5352,0.0,-144.963:33:41:80:47,33:1211,0,1800:1:.:1:.:.:.:-0.00409698	0/1:120.0165:242:144:5569:99:3754:-271.864,0.0,-435.146:98:41:242:143,98:3409,0,5482:.:1:1:.:.:.:-0.0101778
chr11	108175462	.	G	A	4667.08	REJECT	NS=2;DP=342;DPB=387.0;AC=2;AN=4;AF=0.5;RO=213;AO=173;PRO=0.0;PAO=0.0;QR=8236;QA=6420;PQR=0.0;PQA=0.0;SRF=107;SRR=106;SAF=90;SAR=83;SRP=3.02049;SAP=3.62534;AB=0.447028;ABP=12.4425;RUN=1;RPP=4.52908;RPPR=4.73321;RPL=81.0;RPR=92.0;EPP=4.52908;EPPR=14.1123;DPRA=0.0;ODDS=224.188;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99422;PAIREDR=0.995305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0505;Dels=0.0;FS=6.2005;HaplotypeScore=4.8989;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1075;QD=14.32;ReadPosRankSum=-0.169;SOR=1.181;ClippingRankSum=-0.353	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8425:88:50:1935:38:1350:-97.6946,0.0,-150.377:38:43:88:49,39:1161,0,1693:1:.:1:.:.:.:-0.00409698	0/1:117.8425:298:163:6301:135:5070:-375.331,0.0,-486.055:134:45:297:162,134:4711,0,6138:.:1:1:.:.:.:-0.0101778
chr11	108183167	.	A	G	14236.599999999999	REJECT	NS=2;DP=370;DPB=413.0;AC=4;AN=4;AF=1.0;RO=0;AO=413;PRO=0.0;PAO=0.0;QR=0;QA=15985;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=188;SAR=225;SRP=0.0;SAP=10.2082;AB=0.0;ABP=0.0;RUN=1;RPP=3.89887;RPPR=0.0;RPL=200.0;RPR=213.0;EPP=25.2245;EPPR=0.0;DPRA=0.0;ODDS=58.0225;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9516;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=59.975;QD=28.52;SOR=0.883	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:85:0:0:86:3319:-298.819,-23.3238,0.0:85:100:85:0,84:3608,253,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:327:0:0:327:12666:-1139.18,-88.5739,0.0:327:100:327:0,327:14194,978,0:.:1:1:.:.:.:-0.0101778
chr11	108334321	.	A	G	6023.1	REJECT	NS=2;DP=366;DPB=418.0;AC=2;AN=4;AF=0.5;RO=206;AO=212;PRO=0.0;PAO=0.0;QR=8000;QA=8145;PQR=0.0;PQA=0.0;SRF=97;SRR=109;SAF=105;SAR=107;SRP=4.52822;SAP=3.05127;AB=0.507177;ABP=3.19732;RUN=1;RPP=7.96781;RPPR=3.38978;RPL=95.0;RPR=117.0;EPP=5.63246;EPPR=4.52822;DPRA=0.0;ODDS=347.717;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995146;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0065;Dels=0.0;FS=1.714;HaplotypeScore=6.8127;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1785;QD=18.09;ReadPosRankSum=-0.215;SOR=0.616;ClippingRankSum=1.081	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.693:103:53:2056:51:1988:-150.745,0.0,-156.856:50:49:103:52,50:1813,0,1827:1:.:1:.:.:.:-0.00409698	0/1:120.693:314:153:5944:161:6157:-468.743,0.0,-449.589:161:51:314:153,161:5948,0,5702:.:1:1:.:.:.:-0.0101778
chr11	108336410	.	G	GT	6794.97	REJECT	NS=2;DP=301;DPB=381.526;AC=2;AN=2;AF=0.25;RO=76;AO=38;PRO=47.3333;PAO=48.3333;QR=2875;QA=1304;PQR=1648.5;PQA=1690.0;SRF=24;SRR=52;SAF=11;SAR=27;SRP=25.4108;SAP=17.6392;AB=0.126246;ABP=368.229;RUN=1;RPP=30.668;RPPR=44.2683;RPL=30.0;RPR=8.0;EPP=3.9246;EPPR=3.12459;DPRA=0.0;ODDS=99.7959;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986842;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.583;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.967;QD=3.49;ReadPosRankSum=-0.155;SOR=0.458;ClippingRankSum=-0.583	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:116.2385:67:3:115:20:704:-223.381,-102.767,-108.884:20:33:61:43,20:362,0,1033:1:.:1:.:.:.:-0.00409698	./1:133.477:230:73:2760:18:600:-473.293,-329.211,-575.706:18:9:204:.:.:.:.:1:.:.:.:-0.0101778
chr11	108336420	.	A	T	6122.870000000001	REJECT	NS=2;DP=290;DPB=381.526;AC=2;AN=3;AF=0.5;RO=76;AO=149;PRO=47.3333;PAO=59.3333;QR=2875;QA=5455;PQR=1648.5;PQA=2108.5;SRF=24;SRR=52;SAF=50;SAR=99;SRP=25.4108;SAP=38.0016;AB=0.495017;ABP=3.07523;RUN=1;RPP=43.9477;RPPR=44.2683;RPL=101.0;RPR=48.0;EPP=8.27138;EPPR=3.12459;DPRA=0.0;ODDS=99.7959;GTI=0;TYPE=snp;CIGAR=10M1X8M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=59.8658;MQMR=60.0;PAIRED=0.986577;PAIREDR=0.986842;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.4485;Dels=0.03;FS=2.221;HaplotypeScore=54.2353;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.377;QD=13.825;ReadPosRankSum=0.786;SOR=0.943;ClippingRankSum=-0.446	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:116.2385:70:3:115:36:1323:-223.381,-46.4411,-60.2861:35:55:64:35,35:740,0,856:1:.:1:.:.:.:-0.00409698	0/1:116.2385:250:73:2760:113:4132:-473.293,0.0,-251.992:133:56:237:117,154:5479,0,4050:.:1:1:.:.:.:-0.0101778
chr11	108336709	.	TA	T	537	REJECT	NS=1;DP=47;DPB=87.9302;AC=1;AN=3;AF=0.0;RO=10;AO=4;PRO=31.5;PAO=24.5;QR=336;QA=102;PQR=1104.92;PQA=866.917;SRF=7;SRR=3;SAF=3;SAR=1;SRP=6.48466;SAP=5.18177;AB=0.0851064;ABP=73.2828;RUN=1;RPP=5.18177;RPPR=16.9077;RPL=1.0;RPR=3.0;EPP=3.0103;EPPR=10.8276;DPRA=0.0;ODDS=26.8108;GTI=0;TYPE=del;CIGAR=1M1D41M;NUMALT=3;MEANALT=26.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:116.528:47:10:336:4:102:-58.9335,-55.3988,-97.799:4:17:24:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	108336720	.	AAAAAC	A	537	REJECT	NS=1;DP=47;DPB=87.9302;AC=1;AN=3;AF=0.0;RO=10;AO=3;PRO=31.5;PAO=21.0;QR=336;QA=91;PQR=1104.92;PQA=725.25;SRF=7;SRR=3;SAF=1;SAR=2;SRP=6.48466;SAP=3.73412;AB=0.0638298;ABP=80.6751;RUN=1;RPP=3.73412;RPPR=16.9077;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=10.8276;DPRA=0.0;ODDS=26.8108;GTI=0;TYPE=del;CIGAR=12M5D26M;NUMALT=3;MEANALT=26.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:116.528:47:10:336:3:91:-58.9335,-13.5994,-166.303:3:13:24:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	108336721	.	AAAAC	A	537	REJECT	NS=1;DP=47;DPB=87.9302;AC=1;AN=4;AF=0.5;RO=10;AO=7;PRO=31.5;PAO=22.0;QR=336;QA=227;PQR=1104.92;PQA=761.917;SRF=7;SRR=3;SAF=3;SAR=4;SRP=6.48466;SAP=3.32051;AB=0.148936;ABP=53.3238;RUN=1;RPP=18.2106;RPPR=16.9077;RPL=0.0;RPR=7.0;EPP=3.32051;EPPR=10.8276;DPRA=0.0;ODDS=26.8108;GTI=0;TYPE=del;CIGAR=13M4D26M;NUMALT=3;MEANALT=26.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.528:47:10:336:7:227:-58.9335,0.0,-124.351:7:29:24:.:.:1:.:.:.:-0.00409698	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0101778
chr11	108337712	.	A	AAAC	4938.82	REJECT	NS=2;DP=342;DPB=520.4;AC=2;AN=4;AF=0.5;RO=201;AO=175;PRO=19.5;PAO=27.5;QR=7590;QA=6459;PQR=688.5;PQA=962.5;SRF=89;SRR=112;SAF=71;SAR=104;SRP=8.72527;SAP=16.5231;AB=0.459318;ABP=8.48743;RUN=1;RPP=5.10732;RPPR=6.13247;RPL=94.0;RPR=81.0;EPP=6.59633;EPPR=9.76239;DPRA=0.0;ODDS=340.072;GTI=0;TYPE=ins;CIGAR=1M3I4M;NUMALT=1;MEANALT=3.0;LEN=3;MQM=60.2286;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995025;technology.ILLUMINA=1.0;MQ0=0;END=108337712;HOMLEN=3;HOMSEQ=AAC;SVLEN=3;SVTYPE=INS;BaseQRankSum=1.844;FS=3.9225;MLEAC=1;MLEAF=0.5;MQ=60.275;MQRankSum=-0.726;QD=20.72;RPA=1,2;RU=AAC;ReadPosRankSum=-0.0185;SOR=0.7815;STR;ClippingRankSum=0.354	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:52:1970:52:1940:-149.307,0.0,-148.876:54:52:104:38,54:2138,0,2434:1:.:1:1:.:.:-0.00409698	0/1:129.501:290:149:5620:123:4519:-352.454,0.0,-430.048:139:48:272:105,146:7081,0,7762:.:1:1:1:.:.:-0.0101778
chr11	112504010	.	C	A	1427.875	REJECT	NS=2;DP=279;DPB=321.0;AC=2;AN=4;AF=0.5;RO=245;AO=76;PRO=0.0;PAO=0.0;QR=9444;QA=2866;PQR=0.0;PQA=0.0;SRF=150;SRR=95;SAF=45;SAR=31;SRP=29.8213;SAP=8.61041;AB=0.23676;ABP=196.217;RUN=1;RPP=40.0396;RPPR=33.8629;RPL=20.0;RPR=56.0;EPP=4.03889;EPPR=22.589;DPRA=0.0;ODDS=134.278;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986842;PAIREDR=0.995918;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.216;Dels=0.0;FS=2.12;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1145;QD=9.3;ReadPosRankSum=-0.2225;SOR=0.59;ClippingRankSum=-0.431	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:43:1641:39:1465:-109.68,0.0,-125.534:38:47:81:43,38:1273,0,1517:1:.:1:.:.:.:-0.00409698	0/1:129.501:238:202:7803:37:1401:-61.2974,0.0,-637.169:36:15:238:201,36:793,0,7968:.:1:1:.:.:.:-0.0101778
chr11	118349476	.	A	AT	84.3097	REJECT	NS=2;DP=184;DPB=219.875;AC=2;AN=2;AF=0.0;RO=151;AO=10;PRO=32.3333;PAO=24.3333;QR=5769;QA=381;PQR=1142.33;PQA=878.333;SRF=34;SRR=117;SAF=3;SAR=7;SRP=102.078;SAP=6.48466;AB=0.05;ABP=249.255;RUN=1;RPP=3.87889;RPPR=49.7329;RPL=6.0;RPR=4.0;EPP=6.48466;EPPR=4.17513;DPRA=0.0;ODDS=7.02614;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=59.8675;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:30.5173:44:37:1406:3:114:0.0,-1.66829,-128.948:3:7:42:.:.:1:.:.:.:-0.00409698	./1:84.3097:140:114:4363:7:267:-15.6952,-22.9377,-395.32:7:5:136:.:.:1:.:.:.:-0.0557914
chr11	118349476	.	AT	A	84.3097	REJECT	NS=2;DP=184;DPB=219.875;AC=2;AN=3;AF=0.25;RO=151;AO=17;PRO=32.3333;PAO=24.3333;QR=5769;QA=594;PQR=1142.33;PQA=882.333;SRF=34;SRR=117;SAF=4;SAR=13;SRP=102.078;SAP=13.3567;AB=0.107143;ABP=190.688;RUN=1;RPP=18.4661;RPPR=49.7329;RPL=14.0;RPR=3.0;EPP=4.1599;EPPR=4.17513;DPRA=0.0;ODDS=7.02614;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=59.8675;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:30.5173:44:37:1406:2:52:0.0,-6.98081,-134.542:2:5:42:.:.:1:.:.:.:-0.00409698	0/1:84.3097:140:114:4363:15:542:-15.6952,0.0,-370.225:15:11:136:.:.:1:.:.:.:-0.0557914
chr11	118353037	.	G	GT	764.185	REJECT	NS=2;DP=298;DPB=427.083;AC=2;AN=4;AF=0.5;RO=123;AO=39;PRO=68.8833;PAO=49.6333;QR=4374;QA=1206;PQR=2401.37;PQA=1681.62;SRF=46;SRR=77;SAF=23;SAR=16;SRP=19.976;SAP=5.73856;AB=0.130872;ABP=355.692;RUN=1;RPP=4.40227;RPPR=3.02795;RPL=22.0;RPR=17.0;EPP=4.40227;EPPR=4.44029;DPRA=0.0;ODDS=41.8121;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=5;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.4145;FS=9.7975;MLEAC=1;MLEAF=0.5;MQ=59.915;MQRankSum=-0.1185;QD=1.45;RPA=16,17;RU=T;ReadPosRankSum=0.853;SOR=0.9525;STR;ClippingRankSum=-0.424	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:33:1141:9:291:-19.0398,0.0,-105.691:12:21:60:44,16:155,0,804:1:.:1:.:.:.:-0.00409698	0/1:129.501:285:90:3233:30:915:-87.6539,0.0,-314.25:53:24:212:169,77:554,0,2295:.:1:1:.:.:.:-0.178563
chr11	118353037	.	G	GTT	1011.64	PASS	SOMATIC;NS=2;DP=298;DPB=427.083;AC=2;AN=2;AF=0.0;RO=123;AO=15;PRO=68.8833;PAO=46.6333;QR=4374;QA=368;PQR=2401.37;PQA=1592.62;SRF=46;SRR=77;SAF=5;SAR=10;SRP=19.976;SAP=6.62942;AB=0.0503356;ABP=526.379;RUN=1;RPP=6.62942;RPPR=3.02795;RPL=10.0;RPR=5.0;EPP=10.1038;EPPR=4.44029;DPRA=0.0;ODDS=41.8121;GTI=0;TYPE=ins;CIGAR=1M2I23M;NUMALT=5;MEANALT=22.0;LEN=2;MQM=59.8667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:75:33:1141:1:14:-19.0398,-28.3473,-136.74:1:2:60:.:.:1:.:.:.:-0.00409698	./1:160.002:223:90:3233:14:354:-87.6539,-47.7448,-366.556:14:8:179:.:.:1:.:.:.:-0.178563
chr11	118353037	.	GT	G	1011.64	REJECT	NS=2;DP=298;DPB=427.083;AC=2;AN=2;AF=0.0;RO=123;AO=24;PRO=68.8833;PAO=39.0833;QR=4374;QA=701;PQR=2401.37;PQA=1326.83;SRF=46;SRR=77;SAF=11;SAR=13;SRP=19.976;SAP=3.37221;AB=0.0805369;ABP=458.437;RUN=1;RPP=6.26751;RPPR=3.02795;RPL=9.0;RPR=15.0;EPP=3.0103;EPPR=4.44029;DPRA=0.0;ODDS=41.8121;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=5;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:75:33:1141:3:91:-19.0398,-26.8319,-184.841:3:5:60:.:.:1:.:.:.:-0.00409698	./1:160.002:223:90:3233:21:610:-87.6539,-95.4423,-746.916:21:12:179:.:.:1:.:.:.:-0.178563
chr11	118353054	.	C	T	1011.64	REJECT	NS=2;DP=298;DPB=427.083;AC=2;AN=2;AF=0.0;RO=123;AO=25;PRO=68.8833;PAO=27.3833;QR=4374;QA=397;PQR=2401.37;PQA=908.783;SRF=46;SRR=77;SAF=25;SAR=0;SRP=19.976;SAP=57.2971;AB=0.0838926;ABP=451.179;RUN=1;RPP=3.79203;RPPR=3.02795;RPL=14.0;RPR=11.0;EPP=3.79203;EPPR=4.44029;DPRA=0.0;ODDS=41.8121;GTI=0;TYPE=snp;CIGAR=17M1X6M;NUMALT=5;MEANALT=22.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:75:33:1141:9:139:-19.0398,-36.5023,-317.621:9:15:60:.:.:1:.:.:.:-0.00409698	./1:160.002:223:90:3233:16:258:-87.6539,-125.925,-1078.96:16:9:179:.:.:1:.:.:.:-0.178563
chr11	118353054	.	C	TT	1011.64	REJECT	NS=2;DP=298;DPB=427.083;AC=2;AN=2;AF=0.0;RO=123;AO=13;PRO=68.8833;PAO=25.3833;QR=4374;QA=231;PQR=2401.37;PQA=892.783;SRF=46;SRR=77;SAF=13;SAR=0;SRP=19.976;SAP=31.2394;AB=0.0436242;ABP=542.118;RUN=1;RPP=7.18621;RPPR=3.02795;RPL=9.0;RPR=4.0;EPP=7.18621;EPPR=4.44029;DPRA=0.0;ODDS=41.8121;GTI=0;TYPE=complex;CIGAR=1M1I16M1X6M;NUMALT=5;MEANALT=22.0;LEN=25;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:75:33:1141:5:70:-19.0398,-42.5324,-324.824:5:8:60:.:.:1:.:.:.:-0.00409698	./1:160.002:223:90:3233:8:161:-87.6539,-132.49,-1087.55:8:4:179:.:.:1:.:.:.:-0.178563
chr11	118353412	.	G	GCCAGCAGTTCAAGA	265.321	REJECT	NS=2;DP=70;DPB=94.75;AC=2;AN=4;AF=0.5;RO=44;AO=20;PRO=9.0;PAO=9.0;QR=1591;QA=631;PQR=306.5;PQA=306.5;SRF=0;SRR=44;SAF=0;SAR=20;SRP=98.5551;SAP=46.4397;AB=0.285714;ABP=30.9292;RUN=1;RPP=18.6449;RPPR=31.4368;RPL=16.0;RPR=4.0;EPP=18.6449;EPPR=31.4368;DPRA=0.0;ODDS=6.98262;GTI=0;TYPE=ins;CIGAR=1M14I15M;NUMALT=1;MEANALT=4.0;LEN=14;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977273;technology.ILLUMINA=1.0;BaseQRankSum=-0.978;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.557;QD=9.92;ReadPosRankSum=0.181;SOR=0.346;ClippingRankSum=-1.774	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:64.6646:21:14:507:4:123:-6.2204,0.0,-40.9302:6:30:19:13,8:325,0,558:1:.:1:.:.:.:-0.00409698	0/1:160.002:49:30:1084:16:508:-33.3036,0.0,-85.2264:16:35:46:.:.:.:.:1:.:.:.:-0.178563
chr11	118353467	.	C	A	23.733	REJECT	NS=2;DP=22;DPB=31.1212;AC=2;AN=2;AF=0.0;RO=9;AO=2;PRO=6.1;PAO=2.6;QR=333;QA=48;PQR=211.2;PQA=72.2;SRF=0;SRR=9;SAF=0;SAR=2;SRP=22.5536;SAP=7.35324;AB=0.222222;ABP=9.04217;RUN=1;RPP=7.35324;RPPR=3.25157;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=3.25157;DPRA=0.0;ODDS=0.0876552;GTI=0;TYPE=snp;CIGAR=1X32M;NUMALT=4;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.549:9:4:141:2:48:-4.61734,-4.62415,-40.6235:2:22:9:.:.:1:.:.:.:-0.00409698	./1:3.0035:13:5:192:0:0:-2.51461,-13.21,-133.669:0:0:9:.:.:1:.:.:.:-0.178563
chr11	118353467	.	C	CA	23.733	REJECT	NS=2;DP=22;DPB=31.1212;AC=2;AN=3;AF=0.25;RO=9;AO=2;PRO=6.1;PAO=5.1;QR=333;QA=67;PQR=211.2;PQA=177.7;SRF=0;SRR=9;SAF=0;SAR=2;SRP=22.5536;SAP=7.35324;AB=0.153846;ABP=16.5402;RUN=1;RPP=7.35324;RPPR=3.25157;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=3.25157;DPRA=0.0;ODDS=0.0876552;GTI=0;TYPE=ins;CIGAR=1M1I32M;NUMALT=4;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.549:9:4:141:0:0:-4.61734,-3.02044,-20.4221:0:0:9:.:.:1:.:.:.:-0.00409698	0/1:3.0035:13:5:192:2:67:-2.51461,0.0,-33.4868:2:22:9:.:.:1:.:.:.:-0.178563
chr11	118353467	.	CA	C	23.733	REJECT	NS=2;DP=22;DPB=31.1212;AC=2;AN=3;AF=0.25;RO=9;AO=3;PRO=6.1;PAO=5.1;QR=333;QA=78;PQR=211.2;PQA=165.7;SRF=0;SRR=9;SAF=0;SAR=3;SRP=22.5536;SAP=9.52472;AB=0.333333;ABP=5.18177;RUN=1;RPP=3.73412;RPPR=3.25157;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.25157;DPRA=0.0;ODDS=0.0876552;GTI=0;TYPE=del;CIGAR=1M1D31M;NUMALT=4;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:20.549:9:4:141:3:78:-4.61734,0.0,-16.872:3:33:9:.:.:1:.:.:.:-0.00409698	./1:3.0035:13:5:192:0:0:-2.51461,-3.33834,-37.0971:0:0:9:.:.:1:.:.:.:-0.178563
chr11	118353479	.	AAAG	A	23.733	REJECT	NS=2;DP=22;DPB=31.1212;AC=2;AN=2;AF=0.0;RO=9;AO=2;PRO=6.1;PAO=5.1;QR=333;QA=78;PQR=211.2;PQA=173.2;SRF=0;SRR=9;SAF=0;SAR=2;SRP=22.5536;SAP=7.35324;AB=0.153846;ABP=16.5402;RUN=1;RPP=3.0103;RPPR=3.25157;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=3.25157;DPRA=0.0;ODDS=0.0876552;GTI=0;TYPE=del;CIGAR=13M3D17M;NUMALT=4;MEANALT=6.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.549:9:4:141:0:0:-4.61734,-6.80103,-30.4577:0:0:9:.:.:1:.:.:.:-0.00409698	./1:3.0035:13:5:192:2:78:-2.51461,-0.640128,-54.6965:2:22:9:.:.:1:.:.:.:-6.24601
chr11	118353947	.	CA	C	29.3325	REJECT	NS=2;DP=12;DPB=16.5652;AC=2;AN=4;AF=0.5;RO=5;AO=3;PRO=8.0;PAO=6.0;QR=167;QA=107;PQR=227.5;PQA=172.5;SRF=5;SRR=0;SAF=3;SAR=0;SRP=13.8677;SAP=9.52472;AB=0.25;ABP=9.52472;RUN=1;RPP=3.73412;RPPR=13.8677;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=13.8677;DPRA=0.0;ODDS=4.99;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21.0147:3:1:32:1:40:-2.54195,0.0,-6.82021:1:50:2:.:.:1:.:.:.:-0.00409698	0/1:27.3439:9:4:135:2:67:-4.44361,0.0,-10.6181:2:33:6:.:.:1:.:.:.:-6.24601
chr11	118354091	.	CA	C	2259.715	REJECT	NS=2;DP=72;DPB=83.4167;AC=4;AN=4;AF=1.0;RO=0;AO=81;PRO=8.5;PAO=8.5;QR=0;QA=3008;PQR=300.0;PQA=300.0;SRF=0;SRR=0;SAF=81;SAR=0;SRP=0.0;SAP=178.9;AB=0.0;ABP=0.0;RUN=1;RPP=17.1919;RPPR=0.0;RPL=29.0;RPR=52.0;EPP=17.1919;EPPR=0.0;DPRA=0.0;ODDS=16.8462;GTI=0;TYPE=del;CIGAR=1M1D10M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=52.8519;MQMR=0.0;PAIRED=0.975309;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=53.89;QD=31.035;RPA=7,6;RU=A;SOR=7.2355;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:68.0811:20:0:0:20:765:-68.0674,-5.44116,0.0:20:100:20:0,21:654,63,0:1:.:1:.:.:.:-0.00409698	1/1:120.3265:62:0:0:61:2243:-198.733,-16.5097,0.0:61:100:61:0,62:2182,187,0:.:1:1:.:.:.:-0.00226422
chr11	118357090	.	G	GT	4499.355	REJECT	NS=2;DP=341;DPB=467.435;AC=2;AN=4;AF=0.5;RO=99;AO=175;PRO=67.6667;PAO=73.6667;QR=3602;QA=5744;PQR=2341.67;PQA=2569.67;SRF=46;SRR=53;SAF=82;SAR=93;SRP=4.08507;SAP=4.51172;AB=0.513196;ABP=3.5261;RUN=1;RPP=4.01538;RPPR=3.20771;RPL=83.0;RPR=92.0;EPP=3.12198;EPPR=6.71716;DPRA=0.0;ODDS=205.38;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=3;MEANALT=13.5;LEN=1;MQM=60.1714;MQMR=59.798;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.5495;FS=1.2025;MLEAC=1;MLEAF=0.5;MQ=60.145;MQRankSum=-1.364;QD=9.245;RPA=12,13;RU=T;ReadPosRankSum=-0.1215;SOR=0.579;STR;ClippingRankSum=-0.609	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:43:1570:36:1135:-92.9009,0.0,-128.457:41:43:94:50,47:913,0,863:1:.:1:.:.:.:-0.00409698	0/1:129.501:295:56:2032:139:4609:-433.419,0.0,-168.745:171:67:253:83,204:3835,0,1179:.:1:1:.:.:.:-0.00226422
chr11	118357090	.	G	GTT	5200.98	REJECT	NS=2;DP=341;DPB=467.435;AC=2;AN=2;AF=0.0;RO=99;AO=22;PRO=67.6667;PAO=56.6667;QR=3602;QA=711;PQR=2341.67;PQA=1911.67;SRF=46;SRR=53;SAF=8;SAR=14;SRP=4.08507;SAP=6.56362;AB=0.0645161;ABP=564.721;RUN=1;RPP=4.58955;RPPR=3.20771;RPL=13.0;RPR=9.0;EPP=4.58955;EPPR=6.71716;DPRA=0.0;ODDS=205.38;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=3;MEANALT=13.5;LEN=2;MQM=60.0;MQMR=59.798;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:98:43:1570:5:169:-92.9009,-91.5145,-229.018:5:5:92:.:.:1:.:.:.:-0.00409698	./1:160.002:243:56:2032:17:542:-433.419,-374.482,-579.594:17:8:219:.:.:1:.:.:.:-0.00226422
chr11	118357090	.	GT	G	5200.98	REJECT	NS=2;DP=341;DPB=467.435;AC=2;AN=2;AF=0.0;RO=99;AO=15;PRO=67.6667;PAO=46.0;QR=3602;QA=429;PQR=2341.67;PQA=1528.0;SRF=46;SRR=53;SAF=8;SAR=7;SRP=4.08507;SAP=3.15506;AB=0.0439883;ABP=618.925;RUN=1;RPP=3.15506;RPPR=3.20771;RPL=7.0;RPR=8.0;EPP=3.15506;EPPR=6.71716;DPRA=0.0;ODDS=205.38;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=3;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=59.798;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:98:43:1570:8:235:-92.9009,-88.4657,-259.195:8:9:92:.:.:1:.:.:.:-0.00409698	./1:160.002:243:56:2032:7:194:-433.419,-443.799,-799.707:7:3:219:.:.:1:.:.:.:-0.00226422
chr11	118357614	.	T	A	7212.61	REJECT	NS=2;DP=274;DPB=319.0;AC=2;AN=4;AF=0.5;RO=74;AO=244;PRO=0.0;PAO=0.0;QR=2873;QA=9349;PQR=0.0;PQA=0.0;SRF=61;SRR=13;SAF=201;SAR=43;SRP=70.6194;SAP=225.177;AB=0.76489;ABP=197.429;RUN=1;RPP=35.0484;RPPR=36.9322;RPL=92.0;RPR=152.0;EPP=5.89373;EPPR=4.88833;DPRA=0.0;ODDS=75.7058;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983607;PAIREDR=0.972973;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4285;Dels=0.0;FS=7.427;HaplotypeScore=3.9636;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1415;QD=25.215;ReadPosRankSum=0.5865;SOR=0.926;ClippingRankSum=0.788	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.037:86:45:1747:42:1595:-120.005,0.0,-133.704:41:47:86:45,40:1386,0,1568:1:.:1:.:.:.:-0.00409698	0/1:122.037:230:29:1126:202:7754:-634.937,0.0,-38.735:201:87:230:28,201:7919,0,542:.:1:1:.:.:.:-0.00226422
chr11	118358068	.	T	A	4360.56	PASS	SOMATIC;NS=2;DP=535;DPB=535.0;AC=1;AN=3;AF=0.25;RO=375;AO=160;PRO=0.0;PAO=0.0;QR=14270;QA=6138;PQR=0.0;PQA=0.0;SRF=202;SRR=173;SAF=82;SAR=78;SRP=7.88019;SAP=3.22745;AB=0.395062;ABP=41.7483;RUN=1;RPP=10.8276;RPPR=15.8017;RPL=68.0;RPR=92.0;EPP=3.22745;EPPR=3.98891;DPRA=3.11538;ODDS=81.9866;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0625;MQMR=60.0;PAIRED=0.99375;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.957;Dels=0.0;FS=2.506;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.602;QD=13.85;ReadPosRankSum=-1.453;SOR=0.524	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:129:130:4822:0:0:0.0,-35.1804,-433.917:0:0:129:128,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:405:245:9448:160:6138:-442.356,0.0,-740.055:160:40:405:240,154:38.0:0.387:2:5638,0,9354:.:1:1:.:.:1:-0.00226422
chr11	118359161	.	G	A	13836.6	REJECT	NS=2;DP=523;DPB=592.0;AC=2;AN=4;AF=0.5;RO=124;AO=466;PRO=0.0;PAO=0.0;QR=4653;QA=17237;PQR=0.0;PQA=0.0;SRF=66;SRR=58;SAF=229;SAR=237;SRP=4.13106;SAP=3.30853;AB=0.787162;ABP=427.034;RUN=1;RPP=6.66359;RPPR=3.08035;RPL=247.0;RPR=219.0;EPP=3.17805;EPPR=3.08035;DPRA=0.0;ODDS=175.835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997854;PAIREDR=0.975806;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4655;Dels=0.0;FS=2.7145;HaplotypeScore=6.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.409;QD=24.89;ReadPosRankSum=0.0905;SOR=0.6065;ClippingRankSum=0.116	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.6825:133:65:2430:71:2553:-192.935,0.0,-181.876:69:52:133:63,67:2271,0,2205:1:.:1:.:.:.:-0.00409698	0/1:120.6825:454:59:2223:395:14684:-1197.73,0.0,-77.1923:395:87:453:58,395:14914,0,1118:.:1:1:.:.:.:-0.00226422
chr11	118359946	.	C	AA	201.164	REJECT	NS=2;DP=66;DPB=138.2;AC=2;AN=2;AF=0.0;RO=13;AO=4;PRO=34.0167;PAO=22.6;QR=454;QA=72;PQR=1173.15;PQA=775.4;SRF=7;SRR=6;SAF=0;SAR=4;SRP=3.17734;SAP=11.6962;AB=0.0851064;ABP=73.2828;RUN=1;RPP=5.18177;RPPR=16.5402;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=4.51363;DPRA=0.0;ODDS=3.92609;GTI=1;TYPE=complex;CIGAR=1X1I29M;NUMALT=4;MEANALT=19.0;LEN=31;MQM=70.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.0847854:19:5:172:0:0:-4.13842,-15.5305,-131.097:0:0:12:.:.:1:.:.:.:-0.00409698	./1:62.2993:47:8:282:4:72:-21.784,-43.4801,-329.258:4:13:32:.:.:1:.:.:.:-0.00226422
chr11	118359946	.	C	CA	201.164	REJECT	NS=2;DP=66;DPB=138.2;AC=2;AN=3;AF=0.25;RO=13;AO=13;PRO=34.0167;PAO=34.0167;QR=454;QA=362;PQR=1173.15;PQA=1173.15;SRF=7;SRR=6;SAF=10;SAR=3;SRP=3.17734;SAP=11.1951;AB=0.19697;ABP=55.6521;RUN=1;RPP=4.51363;RPPR=16.5402;RPL=5.0;RPR=8.0;EPP=4.51363;EPPR=4.51363;DPRA=0.0;ODDS=3.92609;GTI=1;TYPE=ins;CIGAR=1M1I29M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=56.6154;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.0847854:19:5:172:3:65:-4.13842,-0.448952,-13.8161:3:25:12:.:.:1:.:.:.:-0.00409698	0/1:62.2993:47:8:282:10:297:-21.784,0.0,-20.908:10:31:32:.:.:1:.:.:.:-0.00226422
chr11	118359946	.	C	CAA	201.164	REJECT	NS=2;DP=66;DPB=138.2;AC=2;AN=3;AF=0.25;RO=13;AO=10;PRO=34.0167;PAO=34.0167;QR=454;QA=298;PQR=1173.15;PQA=1173.15;SRF=7;SRR=6;SAF=10;SAR=0;SRP=3.17734;SAP=24.725;AB=0.151515;ABP=72.629;RUN=1;RPP=10.8276;RPPR=16.5402;RPL=8.0;RPR=2.0;EPP=10.8276;EPPR=4.51363;DPRA=0.0;ODDS=3.92609;GTI=1;TYPE=ins;CIGAR=1M2I29M;NUMALT=4;MEANALT=14.0;LEN=2;MQM=52.4;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.0847854:19:5:172:3:70:-4.13842,0.0,-13.3552:3:25:12:.:.:1:.:.:.:-0.00409698	./1:62.2993:47:8:282:7:228:-21.784,-5.52483,-26.8557:7:22:32:.:.:1:.:.:.:-0.00226422
chr11	118359946	.	CA	C	201.164	REJECT	NS=2;DP=66;DPB=138.2;AC=2;AN=2;AF=0.0;RO=13;AO=4;PRO=34.0167;PAO=25.35;QR=454;QA=147;PQR=1173.15;PQA=873.15;SRF=7;SRR=6;SAF=4;SAR=0;SRP=3.17734;SAP=11.6962;AB=0.0606061;ABP=113.69;RUN=1;RPP=5.18177;RPPR=16.5402;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=4.51363;DPRA=0.0;ODDS=3.92609;GTI=1;TYPE=del;CIGAR=1M1D28M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=57.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.0847854:19:5:172:1:35:-4.13842,-6.13859,-56.7276:1:8:12:.:.:1:.:.:.:-0.00409698	./1:62.2993:47:8:282:3:112:-21.784,-34.2132,-256.157:3:9:32:.:.:1:.:.:.:-0.00226422
chr11	118369265	.	T	TA	498.819	REJECT	NS=2;DP=165;DPB=199.19;AC=2;AN=2;AF=0.0;RO=94;AO=13;PRO=31.1667;PAO=19.1667;QR=3498;QA=323;PQR=1117.42;PQA=685.417;SRF=29;SRR=65;SAF=2;SAR=11;SRP=32.9489;SAP=16.5402;AB=0.0787879;ABP=257.283;RUN=1;RPP=23.2217;RPPR=75.4543;RPL=12.0;RPR=1.0;EPP=11.1951;EPPR=5.32038;DPRA=0.0;ODDS=15.9448;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=58.4615;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:69.247:33:23:859:2:54:-8.70249,-11.1636,-87.1146:2:6:31:.:.:1:.:.:.:-0.00409698	./1:160.002:132:71:2639:11:269:-49.4537,-50.1741,-295.858:11:10:114:.:.:1:.:.:.:-0.00226422
chr11	118369265	.	TA	T	498.819	REJECT	NS=2;DP=165;DPB=199.19;AC=2;AN=4;AF=0.5;RO=94;AO=31;PRO=31.1667;PAO=16.5;QR=3498;QA=1131;PQR=1117.42;PQA=587.75;SRF=29;SRR=65;SAF=13;SAR=18;SRP=32.9489;SAP=4.76149;AB=0.187879;ABP=142.629;RUN=1;RPP=33.9012;RPPR=75.4543;RPL=26.0;RPR=5.0;EPP=3.08035;EPPR=5.32038;DPRA=0.0;ODDS=15.9448;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.304;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.692;QD=0.6;ReadPosRankSum=-1.577;SOR=0.627;ClippingRankSum=0.581	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:68.6235:30:23:859:6:217:-8.70249,0.0,-100.799:6:22:29:21,7:68,0,413:1:.:1:.:.:.:-0.00409698	0/1:160.002:132:71:2639:25:914:-49.4537,0.0,-288.508:25:22:114:.:.:.:.:1:.:.:.:-0.00226422
chr11	118369281	.	G	A	498.819	REJECT	NS=2;DP=165;DPB=199.19;AC=2;AN=2;AF=0.0;RO=94;AO=7;PRO=31.1667;PAO=19.1667;QR=3498;QA=111;PQR=1117.42;PQA=685.417;SRF=29;SRR=65;SAF=7;SAR=0;SRP=32.9489;SAP=18.2106;AB=0.0530303;ABP=232.068;RUN=1;RPP=18.2106;RPPR=75.4543;RPL=7.0;RPR=0.0;EPP=18.2106;EPPR=5.32038;DPRA=0.0;ODDS=15.9448;GTI=0;TYPE=snp;CIGAR=16M1X4M;NUMALT=3;MEANALT=16.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:69.247:33:23:859:0:0:-8.70249,-15.4861,-91.964:0:0:31:.:.:1:.:.:.:-0.00409698	./1:160.002:132:71:2639:7:111:-49.4537,-63.3076,-310.082:7:6:114:.:.:1:.:.:.:-0.00226422
chr11	119148573	.	G	T	8848.630000000001	REJECT	NS=2;DP=235;DPB=273.0;AC=4;AN=4;AF=1.0;RO=0;AO=273;PRO=0.0;PAO=0.0;QR=0;QA=10517;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=67;SAR=206;SRP=0.0;SAP=156.692;AB=0.0;ABP=0.0;RUN=1;RPP=74.7962;RPPR=0.0;RPL=184.0;RPR=89.0;EPP=3.08189;EPPR=0.0;DPRA=0.0;ODDS=50.4885;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992674;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.74;SOR=2.589	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.703:72:0:0:74:2845:-256.162,-20.0518,0.0:72:100:72:0,71:2926,213,0:1:.:1:.:.:.:-0.00409698	1/1:123.703:198:0:0:199:7672:-690.194,-53.9118,0.0:198:100:198:0,198:8535,590,0:.:1:1:.:.:.:-0.00226422
chr11	125495839	.	A	T	2838.37	PASS	SOMATIC;NS=2;DP=417;DPB=417.0;AC=1;AN=3;AF=0.25;RO=307;AO=110;PRO=0.0;PAO=0.0;QR=11654;QA=4188;PQR=0.0;PQA=0.0;SRF=137;SRR=170;SAF=46;SAR=64;SRP=10.713;SAP=9.40627;AB=0.342679;ABP=72.0171;RUN=1;RPP=3.08926;RPPR=13.7686;RPL=54.0;RPR=56.0;EPP=3.72096;EPPR=19.9931;DPRA=3.34375;ODDS=60.8854;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986971;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.649;Dels=0.0;FS=0.433;HaplotypeScore=4.912;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.803;QD=11.52;ReadPosRankSum=-0.178;SOR=0.765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:94:96:3684:0:0:0.0,-26.0162,-331.617:0:0:94:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:321:211:7970:110:4188:-289.786,0.0,-629.963:110:34:321:202,106:38.0:0.346:2:3727,0,7950:.:1:1:.:.:1:-0.00226422
chr11	125525195	.	A	G	12108.849999999999	REJECT	NS=2;DP=322;DPB=370.0;AC=4;AN=4;AF=1.0;RO=0;AO=370;PRO=0.0;PAO=0.0;QR=0;QA=14093;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=172;SAR=198;SRP=0.0;SAP=6.97764;AB=0.0;ABP=0.0;RUN=1;RPP=12.4005;RPPR=0.0;RPL=205.0;RPR=165.0;EPP=61.6987;EPPR=0.0;DPRA=0.0;ODDS=62.7371;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991892;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9326;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=35.965;SOR=0.911	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3616:-325.135,-25.3713,0.0:94:100:94:0,93:3814,280,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:274:0:0:275:10477:-942.362,-74.4444,0.0:274:100:274:0,274:11685,810,0:.:1:1:.:.:.:-0.00226422
chr11	128333503	.	T	C	3361.44	PASS	SOMATIC;NS=2;DP=405;DPB=405.0;AC=1;AN=3;AF=0.25;RO=284;AO=121;PRO=0.0;PAO=0.0;QR=10926;QA=4676;PQR=0.0;PQA=0.0;SRF=101;SRR=183;SAF=54;SAR=67;SRP=54.4222;SAP=6.04318;AB=0.418685;ABP=19.6082;RUN=1;RPP=12.5038;RPPR=3.49965;RPL=72.0;RPR=49.0;EPP=3.02825;EPPR=11.8491;DPRA=2.49138;ODDS=73.3532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983471;PAIREDR=0.996479;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.306;Dels=0.0;FS=9.569;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.324;QD=14.94;ReadPosRankSum=-0.585;SOR=0.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:112:116:4473:0:0:0.0,-31.4309,-402.553:0:0:112:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.00409698	0/1:129.501:288:168:6453:121:4676:-342.691,0.0,-502.138:120:42:288:161,115:38.0:0.417:2:4331,0,6369:.:1:1:.:.:1:-0.00226422
chr11	130500152	.	A	T	12141.099999999999	REJECT	NS=2;DP=330;DPB=381.0;AC=4;AN=4;AF=1.0;RO=1;AO=378;PRO=0.0;PAO=0.0;QR=16;QA=14332;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=112;SAR=266;SRP=5.18177;SAP=139.25;AB=0.0;ABP=0.0;RUN=1;RPP=180.956;RPPR=5.18177;RPL=277.0;RPR=101.0;EPP=6.31921;EPPR=5.18177;DPRA=0.0;ODDS=66.0423;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0794;MQMR=60.0;PAIRED=0.994709;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.645;Dels=0.0;FS=0.0;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.0;MQ=60.075;MQRankSum=-1.62;QD=30.46;ReadPosRankSum=1.558;SOR=1.8175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:99:3756:-338.07,-26.8067,0.0:98:100:98:0,98:4146,294,0:1:.:1:.:.:.:-0.00409698	1/1:129.501:280:1:16:279:10576:-949.8,-74.3279,0.0:278:100:279:1,278:11792,819,0:.:1:1:.:.:.:-0.00226422
chr12	406292	.	G	A	3032.85	PASS	SOMATIC;NS=2;DP=438;DPB=438.0;AC=1;AN=3;AF=0.25;RO=324;AO=113;PRO=0.0;PAO=0.0;QR=12451;QA=4423;PQR=0.0;PQA=0.0;SRF=186;SRR=138;SAF=53;SAR=60;SRP=18.4519;SAP=3.95191;AB=0.343465;ABP=73.032;RUN=1;RPP=3.18325;RPPR=14.8328;RPL=55.0;RPR=58.0;EPP=6.2579;EPPR=10.7579;DPRA=3.01835;ODDS=69.0063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.882;Dels=0.0;FS=8.859;HaplotypeScore=6.8146;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.573;QD=12.02;ReadPosRankSum=-1.128;SOR=0.633	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:105:109:4188:0:0:0.0,-29.5431,-376.938:0:0:105:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:129.501:329:215:8263:113:4423:-308.97,0.0,-654.353:113:34:328:208,108:39.0:0.338:2:3984,0,8249:.:1:1:.:.:1:-0.0132393
chr12	427575	.	A	G	1951.84	PASS	SOMATIC;NS=2;DP=394;DPB=394.0;AC=1;AN=3;AF=0.25;RO=311;AO=83;PRO=0.0;PAO=0.0;QR=12006;QA=3113;PQR=0.0;PQA=0.0;SRF=108;SRR=203;SAF=35;SAR=48;SRP=66.0249;SAP=7.43173;AB=0.285223;ABP=119.606;RUN=1;RPP=3.66436;RPPR=5.02816;RPL=44.0;RPR=39.0;EPP=7.43173;EPPR=12.569;DPRA=2.82524;ODDS=65.2646;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993569;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.322;Dels=0.0;FS=3.836;HaplotypeScore=9.6724;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.514;QD=8.87;ReadPosRankSum=-1.111;SOR=0.443	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:99:103:3949:0:0:0.0,-27.9181,-355.455:0:0:99:96,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:129.501:290:208:8057:83:3113:-201.178,0.0,-645.91:83:29:290:200,80:37.0:0.287:2:2610,0,8124:.:1:1:.:.:1:-0.0132393
chr12	496392	.	C	CA	882.326	REJECT	NS=2;DP=263;DPB=326.842;AC=2;AN=2;AF=0.0;RO=125;AO=21;PRO=49.5;PAO=47.5;QR=4532;QA=610;PQR=1707.0;PQA=1600.0;SRF=87;SRR=38;SAF=10;SAR=11;SRP=44.7199;SAP=3.1137;AB=0.0798479;ABP=406.268;RUN=1;RPP=20.4855;RPPR=32.2123;RPL=4.0;RPR=17.0;EPP=11.386;EPPR=3.44459;DPRA=0.0;ODDS=82.4083;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:132.834:67:27:973:6:172:-42.1052,-35.5623,-114.282:6:12:51:.:.:1:.:.:.:-0.00757061	./1:132.834:196:98:3559:15:438:-53.197,-45.2982,-344.473:15:10:147:.:.:1:.:.:.:-0.0132393
chr12	496392	.	CA	C	639.528	REJECT	NS=2;DP=248;DPB=326.842;AC=2;AN=4;AF=0.5;RO=125;AO=52;PRO=49.5;PAO=39.0;QR=4532;QA=1691;PQR=1707.0;PQA=1324.0;SRF=87;SRR=38;SAF=33;SAR=19;SRP=44.7199;SAP=11.1951;AB=0.197719;ABP=211.744;RUN=1;RPP=13.7006;RPPR=32.2123;RPL=18.0;RPR=34.0;EPP=3.17734;EPPR=3.44459;DPRA=0.0;ODDS=82.4083;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=2;MEANALT=16.5;LEN=1;MQM=60.1923;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.2475;FS=3.3305;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=0.3265;QD=3.02;RPA=14,13;RU=A;ReadPosRankSum=-0.3185;SOR=0.3685;STR;ClippingRankSum=0.603	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.917:63:27:973:18:609:-42.1052,0.0,-82.1303:20:36:55:37,23:341,0,660:1:.:1:.:.:.:-0.00757061	0/1:115.917:214:98:3559:34:1082:-53.197,0.0,-376.971:41:23:177:159,49:434,0,2830:.:1:1:.:.:.:-0.0132393
chr12	496439	.	A	T	7936.885	REJECT	NS=2;DP=388;DPB=439.0;AC=3;AN=4;AF=0.75;RO=129;AO=310;PRO=0.0;PAO=0.0;QR=4646;QA=10931;PQR=0.0;PQA=0.0;SRF=70;SRR=59;SAF=131;SAR=179;SRP=5.04711;SAP=19.1492;AB=0.629412;ABP=52.4688;RUN=1;RPP=21.9511;RPPR=9.08706;RPL=129.0;RPR=181.0;EPP=26.5743;EPPR=9.08706;DPRA=0.0;ODDS=52.7115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9677;MQMR=59.9457;PAIRED=0.980645;PAIREDR=0.984496;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0165;Dels=0.0;FS=9.7925;HaplotypeScore=47.6366;MLEAC=1;MLEAF=0.75;MQ=60.05;MQRankSum=-0.549;QD=24.53;ReadPosRankSum=0.356;SOR=0.8015;ClippingRankSum=-1.382	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.662:94:3:48:96:3364:-298.427,-22.3905,0.0:92:98:94:1,88:3334,254,0:1:.:1:.:.:.:-0.00757061	0/1:120.662:339:126:4598:214:7567:-588.679,0.0,-322.096:213:63:339:126,212:7148,0,4039:.:1:1:.:.:.:-0.0132393
chr12	498247	.	A	C	60.568	REJECT	NS=2;DP=237;DPB=261.286;AC=2;AN=2;AF=0.0;RO=154;AO=22;PRO=47.1667;PAO=2.16667;QR=5275;QA=285;PQR=1623.17;PQA=33.1667;SRF=58;SRR=96;SAF=0;SAR=22;SRP=23.3714;SAP=50.7827;AB=0.0526316;ABP=102.098;RUN=1;RPP=17.2236;RPPR=102.503;RPL=5.0;RPR=17.0;EPP=17.2236;EPPR=3.23591;DPRA=0.0;ODDS=5.64706;GTI=0;TYPE=snp;CIGAR=1X6M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:24.5391:57:36:1255:3:30:-11.7926,-22.792,-164.135:3:6:54:.:.:1:.:.:.:-0.00757061	./1:131.703:180:118:4020:19:255:0.0,-21.956,-440.087:19:12:165:.:.:1:.:.:.:-0.0132393
chr12	498247	.	ACG	CCC	60.568	REJECT	NS=2;DP=237;DPB=261.286;AC=2;AN=2;AF=0.0;RO=154;AO=17;PRO=47.1667;PAO=2.66667;QR=5275;QA=196;PQR=1623.17;PQA=20.6667;SRF=58;SRR=96;SAF=0;SAR=17;SRP=23.3714;SAP=39.9253;AB=0.0877193;ABP=87.1644;RUN=1;RPP=13.3567;RPPR=102.503;RPL=4.0;RPR=13.0;EPP=13.3567;EPPR=3.23591;DPRA=0.0;ODDS=5.64706;GTI=0;TYPE=complex;CIGAR=1X1M1X4M;NUMALT=4;MEANALT=8.5;LEN=7;MQM=61.7647;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:24.5391:57:36:1255:5:34:-11.7926,-22.9741,-164.555:5:9:54:.:.:1:.:.:.:-0.00757061	./1:131.703:180:118:4020:12:162:0.0,-29.065,-453.411:12:7:165:.:.:1:.:.:.:-0.0132393
chr12	498247	.	ACGCCCG	CCCCCCC	60.568	REJECT	NS=2;DP=237;DPB=261.286;AC=2;AN=3;AF=0.25;RO=154;AO=15;PRO=47.1667;PAO=2.0;QR=5275;QA=212;PQR=1623.17;PQA=18.0;SRF=58;SRR=96;SAF=0;SAR=15;SRP=23.3714;SAP=35.5824;AB=0.105263;ABP=80.1547;RUN=1;RPP=10.1038;RPPR=102.503;RPL=4.0;RPR=11.0;EPP=10.1038;EPPR=3.23591;DPRA=0.0;ODDS=5.64706;GTI=0;TYPE=complex;CIGAR=1X1M1X3M1X;NUMALT=4;MEANALT=8.5;LEN=7;MQM=57.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:24.5391:57:36:1255:6:68:-11.7926,0.0,-140.078:6:11:54:.:.:1:.:.:.:-0.00757061	./1:131.703:180:118:4020:9:144:0.0,-10.4266,-447.126:9:5:165:.:.:1:.:.:.:-0.0132393
chr12	498247	.	ACGCCCG	CCGCCCC	60.568	REJECT	NS=2;DP=237;DPB=261.286;AC=2;AN=2;AF=0.0;RO=154;AO=11;PRO=47.1667;PAO=1.0;QR=5275;QA=132;PQR=1623.17;PQA=2.0;SRF=58;SRR=96;SAF=0;SAR=11;SRP=23.3714;SAP=26.8965;AB=0.0701754;ABP=94.4788;RUN=1;RPP=12.6832;RPPR=102.503;RPL=2.0;RPR=9.0;EPP=12.6832;EPPR=3.23591;DPRA=0.0;ODDS=5.64706;GTI=0;TYPE=complex;CIGAR=1X5M1X;NUMALT=4;MEANALT=8.5;LEN=7;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:24.5391:57:36:1255:4:32:-11.7926,-2.70236,-143.315:4:7:54:.:.:1:.:.:.:-0.00757061	./1:131.703:180:118:4020:7:100:0.0,-15.0147,-452.533:7:4:165:.:.:1:.:.:.:-0.0132393
chr12	498267	.	CG	C	621.148	REJECT	NS=2;DP=131;DPB=138.913;AC=1;AN=3;AF=0.25;RO=5;AO=23;PRO=12.2333;PAO=13.2333;QR=184;QA=396;PQR=393.933;PQA=408.933;SRF=0;SRR=5;SAF=1;SAR=22;SRP=13.8677;SAP=44.6459;AB=0.175573;ABP=122.773;RUN=1;RPP=10.6577;RPPR=3.44459;RPL=16.0;RPR=7.0;EPP=7.63648;EPPR=3.44459;DPRA=0.0;ODDS=6.55357;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=4;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:25.9821:30:1:36:8:140:-23.4962,-13.3083,-14.5812:8:30:27:.:.:1:.:.:.:-0.00757061	0/0:112.064:101:4:148:15:256:-61.6802,-39.7291,-51.8954:15:17:88:.:.:.:.:.:.:-0.0132393
chr12	498267	.	CGG	C	621.148	REJECT	NS=2;DP=131;DPB=138.913;AC=2;AN=2;AF=0.5;RO=5;AO=47;PRO=12.2333;PAO=12.7333;QR=184;QA=751;PQR=393.933;PQA=397.933;SRF=0;SRR=5;SAF=2;SAR=45;SRP=13.8677;SAP=88.4369;AB=0.358779;ABP=25.703;RUN=1;RPP=5.27418;RPPR=3.44459;RPL=27.0;RPR=20.0;EPP=3.42611;EPPR=3.44459;DPRA=0.0;ODDS=6.55357;GTI=0;TYPE=del;CIGAR=1M2D20M;NUMALT=4;MEANALT=10.5;LEN=2;MQM=60.8511;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.117;FS=4.6715;MLEAC=1;MLEAF=0.5;MQ=59.875;MQRankSum=-1.4165;QD=13.085;RPA=15;RU=G;ReadPosRankSum=0.4;SOR=1.7545;STR;ClippingRankSum=-1.739	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:45.99105:23:1:36:15:223:-23.4962,-7.48378,-7.89282:13:65:21:4,12:330,0,66:1:.:1:.:.:.:-0.00757061	./1:105.532:122:4:148:32:528:-61.6802,-20.7384,-28.894:34:38:89:8,36:2499,620,573:.:1:1:.:.:.:-0.0132393
chr12	498267	.	CGGG	C	621.148	REJECT	SOMATIC;NS=2;DP=131;DPB=138.913;AC=1;AN=3;AF=0.25;RO=5;AO=25;PRO=12.2333;PAO=10.4;QR=184;QA=515;PQR=393.933;PQA=324.6;SRF=0;SRR=5;SAF=3;SAR=22;SRP=13.8677;SAP=34.3664;AB=0.19084;ABP=111.766;RUN=1;RPP=3.09716;RPPR=3.44459;RPL=13.0;RPR=12.0;EPP=5.18177;EPPR=3.44459;DPRA=0.0;ODDS=6.55357;GTI=0;TYPE=del;CIGAR=1M3D19M;NUMALT=4;MEANALT=10.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.025;FS=4.95;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.726;QD=16.52;RPA=15;RU=G;ReadPosRankSum=0.009;SOR=2.062;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:25.9821:30:1:36:2:16:-23.4962,-22.6656,-30.9884:2:7:27:.:.:.:.:.:.:.:.:-0.00757061	./1:105.532:122:4:148:23:499:-61.6802,-26.8207,-71.962:34:38:89:8,46:2499,664,973:.:1:1:.:.:.:-0.0132393
chr12	498267	.	CGGGG	C	621.148	REJECT	NS=2;DP=131;DPB=138.913;AC=0;AN=4;AF=0.0;RO=5;AO=15;PRO=12.2333;PAO=7.4;QR=184;QA=347;PQR=393.933;PQA=267.6;SRF=0;SRR=5;SAF=1;SAR=14;SRP=13.8677;SAP=27.4756;AB=0.114504;ABP=172.103;RUN=1;RPP=14.7363;RPPR=3.44459;RPL=12.0;RPR=3.0;EPP=10.1038;EPPR=3.44459;DPRA=0.0;ODDS=6.55357;GTI=0;TYPE=del;CIGAR=1M4D18M;NUMALT=4;MEANALT=10.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:25.9821:30:1:36:1:27:-23.4962,-22.3932,-30.8375:1:4:27:.:.:.:.:.:.:-0.00757061	0/0:112.064:101:4:148:14:320:-61.6802,-45.0255,-128.544:14:16:88:.:.:.:.:.:.:-0.0132393
chr12	3005685	.	T	C	1498.19	REJECT	NS=2;DP=318;DPB=363.0;AC=2;AN=4;AF=0.5;RO=288;AO=74;PRO=0.0;PAO=0.0;QR=11047;QA=2827;PQR=0.0;PQA=0.0;SRF=124;SRR=164;SAF=30;SAR=44;SRP=15.074;SAP=8.76177;AB=0.203857;ABP=279.529;RUN=1;RPP=5.94472;RPPR=24.9965;RPL=42.0;RPR=32.0;EPP=5.94472;EPPR=13.8978;DPRA=0.0;ODDS=47.1313;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996528;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.231;Dels=0.0;FS=3.41;HaplotypeScore=6.7906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.866;QD=9.355;ReadPosRankSum=0.634;SOR=0.7255;ClippingRankSum=0.606	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4315:88:42:1624:46:1763:-134.86,0.0,-122.347:46:52:88:42,46:1565,0,1520:1:.:1:.:.:.:-0.00757061	0/1:117.4315:274:246:9423:28:1064:-21.514,0.0,-773.394:28:10:274:246,28:372,0,9686:.:1:1:.:.:.:-0.0132393
chr12	4286276	.	C	T	1436.75	REJECT	NS=1;DP=106;DPB=106.0;AC=1;AN=4;AF=0.5;RO=54;AO=52;PRO=0.0;PAO=0.0;QR=2038;QA=2007;PQR=0.0;PQA=0.0;SRF=33;SRR=21;SAF=31;SAR=21;SRP=8.80089;SAP=7.18621;AB=0.490566;ABP=3.09224;RUN=1;RPP=3.67845;RPPR=26.1727;RPL=24.0;RPR=28.0;EPP=31.2394;EPPR=7.03155;DPRA=0.0;ODDS=330.823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980769;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.777;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.145;QD=14.82;ReadPosRankSum=0.355;SOR=0.726;ClippingRankSum=-0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:54:2038:52:2007:-151.919,0.0,-154.706:50:48:104:53,49:1555,0,1740:1:.:1:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0132393
chr12	4290218	.	CA	C	4550.68	REJECT	NS=2;DP=330;DPB=384.231;AC=2;AN=4;AF=0.5;RO=179;AO=170;PRO=54.5;PAO=45.5;QR=6790;QA=6503;PQR=1874.0;PQA=1534.0;SRF=75;SRR=104;SAF=76;SAR=94;SRP=13.2126;SAP=7.14887;AB=0.48433;ABP=3.75887;RUN=1;RPP=6.28028;RPPR=4.47817;RPL=93.0;RPR=77.0;EPP=3.21467;EPPR=3.02243;DPRA=0.0;ODDS=277.968;GTI=0;TYPE=del;CIGAR=1M1D11M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1176;MQMR=60.0;PAIRED=0.994118;PAIREDR=0.988827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.02;FS=1.4955;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.819;QD=11.975;RPA=6,5;RU=A;ReadPosRankSum=-0.662;SOR=0.5665;STR;ClippingRankSum=0.966	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.517:80:40:1498:42:1620:-122.768,0.0,-121.899:40:49:80:41,38:970,0,1064:1:.:1:.:.:.:-0.00757061	0/1:117.517:289:139:5292:128:4883:-385.296,0.0,-442.652:132:48:275:148,136:4125,0,4419:.:1:1:.:.:.:-0.0132393
chr12	4290249	.	A	G	6093.89	REJECT	NS=2;DP=336;DPB=384.0;AC=2;AN=4;AF=0.5;RO=177;AO=207;PRO=0.0;PAO=0.0;QR=6718;QA=8013;PQR=0.0;PQA=0.0;SRF=69;SRR=108;SAF=83;SAR=124;SRP=21.6702;SAP=20.6443;AB=0.539062;ABP=8.09969;RUN=1;RPP=3.27256;RPPR=5.77065;RPL=106.0;RPR=101.0;EPP=3.10471;EPPR=8.42058;DPRA=0.0;ODDS=277.902;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.1695;PAIRED=0.980676;PAIREDR=0.99435;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5785;Dels=0.0;FS=0.4215;HaplotypeScore=2.9969;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-0.097;QD=18.86;ReadPosRankSum=0.1045;SOR=0.762;ClippingRankSum=-1.121	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.2055:89:51:1922:42:1630:-121.916,0.0,-147.807:41:46:89:46,40:1454,0,1615:1:.:1:.:.:.:-0.00757061	0/1:118.2055:289:126:4796:165:6383:-495.345,0.0,-352.56:163:56:289:126,162:6170,0,4444:.:1:1:.:.:.:-0.0132393
chr12	4292353	.	A	T	5493.29	REJECT	NS=2;DP=372;DPB=421.0;AC=2;AN=4;AF=0.5;RO=225;AO=195;PRO=0.0;PAO=0.0;QR=8493;QA=7463;PQR=0.0;PQA=0.0;SRF=122;SRR=103;SAF=101;SAR=94;SRP=6.49431;SAP=3.55595;AB=0.463183;ABP=7.96703;RUN=1;RPP=6.22853;RPPR=3.4832;RPL=106.0;RPR=89.0;EPP=21.7295;EPPR=5.79944;DPRA=0.0;ODDS=209.863;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994872;PAIREDR=0.995556;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0825;Dels=0.0;FS=0.412;HaplotypeScore=7.7234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.861;QD=15.39;ReadPosRankSum=0.466;SOR=0.588;ClippingRankSum=0.62	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.979:93:62:2315:34:1301:-91.0998,0.0,-182.382:34:36:93:56,34:1184,0,1993:1:.:1:.:.:.:-0.00757061	0/1:118.979:324:163:6178:161:6162:-466.513,0.0,-467.933:160:50:323:163,160:5887,0,5936:.:1:1:.:.:.:-0.0132393
chr12	4388084	.	C	G	6628.9	REJECT	NS=2;DP=259;DPB=298.0;AC=2;AN=4;AF=0.5;RO=73;AO=225;PRO=0.0;PAO=0.0;QR=2829;QA=8503;PQR=0.0;PQA=0.0;SRF=17;SRR=56;SAF=53;SAR=172;SRP=48.2543;SAP=139.678;AB=0.755034;ABP=171.365;RUN=1;RPP=11.1268;RPPR=11.607;RPL=127.0;RPR=98.0;EPP=4.64132;EPPR=3.27802;DPRA=0.0;ODDS=122.336;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4;Dels=0.0;FS=1.4505;HaplotypeScore=5.8743;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0275;QD=25.135;ReadPosRankSum=-0.9355;SOR=0.6495;ClippingRankSum=-1.917	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.047:76:39:1529:38:1438:-108.606,0.0,-116.801:38:49:76:38,38:1376,0,1362:1:.:1:.:.:.:-0.00757061	0/1:122.047:221:34:1300:187:7065:-575.699,0.0,-57.1182:187:85:221:34,187:7219,0,812:.:1:1:.:.:.:-0.0132393
chr12	4512480	.	G	A	2796.0150000000003	REJECT	NS=2;DP=498;DPB=572.0;AC=2;AN=4;AF=0.5;RO=439;AO=133;PRO=0.0;PAO=0.0;QR=16802;QA=5123;PQR=0.0;PQA=0.0;SRF=202;SRR=237;SAF=58;SAR=75;SRP=9.06965;SAP=7.72876;AB=0.232517;ABP=358.479;RUN=1;RPP=8.9043;RPPR=9.06965;RPL=57.0;RPR=76.0;EPP=3.02663;EPPR=15.8759;DPRA=0.0;ODDS=156.226;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993166;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.48;Dels=0.0;FS=2.485;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1125;QD=10.08;ReadPosRankSum=0.0865;SOR=0.902;ClippingRankSum=-0.341	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5955:146:68:2591:80:3073:-236.413,0.0,-193.046:79:54:146:65,79:2629,0,2125:1:.:1:.:.:.:-0.00757061	0/1:117.5955:424:371:14211:53:2050:-69.5543,0.0,-1163.28:53:13:424:371,53:1024,0,14622:.:1:1:.:.:.:-0.0132393
chr12	4553332	.	A	G	2074.54	REJECT	NS=2;DP=379;DPB=436.0;AC=2;AN=4;AF=0.5;RO=335;AO=100;PRO=0.0;PAO=0.0;QR=12778;QA=3752;PQR=0.0;PQA=0.0;SRF=179;SRR=156;SAF=37;SAR=63;SRP=6.43928;SAP=17.6895;AB=0.229358;ABP=280.401;RUN=1;RPP=3.79203;RPPR=10.9508;RPL=53.0;RPR=47.0;EPP=4.40004;EPPR=4.10576;DPRA=0.0;ODDS=108.837;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997015;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1655;Dels=0.0;FS=12.332;HaplotypeScore=6.8456;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.419;QD=10.24;ReadPosRankSum=-0.9865;SOR=1.2385;ClippingRankSum=1.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:52:1964:60:2239:-171.171,0.0,-146.442:60:54:111:51,60:2052,0,1650:1:.:1:.:.:.:-0.00757061	0/1:129.501:322:283:10814:40:1513:-48.6442,0.0,-885.181:40:12:322:282,40:753,0,11044:.:1:1:.:.:.:-0.0132393
chr12	4553383	.	A	G	1383.56	REJECT	NS=2;DP=341;DPB=389.0;AC=2;AN=4;AF=0.5;RO=313;AO=73;PRO=0.0;PAO=0.0;QR=11803;QA=2795;PQR=0.0;PQA=0.0;SRF=128;SRR=185;SAF=23;SAR=50;SRP=25.5506;SAP=24.6953;AB=0.187661;ABP=332.633;RUN=1;RPP=13.7487;RPPR=23.9966;RPL=46.0;RPR=27.0;EPP=3.04005;EPPR=22.4981;DPRA=0.0;ODDS=58.672;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986301;PAIREDR=0.990415;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.474;Dels=0.0;FS=5.753;HaplotypeScore=7.7568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.269;QD=8.54;ReadPosRankSum=1.3505;SOR=1.297;ClippingRankSum=0.662	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:51:1951:41:1597:-118.828,0.0,-150.689:40:44:91:50,40:1475,0,1713:1:.:1:.:.:.:-0.00757061	0/1:129.501:294:262:9852:32:1198:-28.186,0.0,-806.585:32:11:293:261,32:476,0,10038:.:1:1:.:.:.:-0.0132393
chr12	4554548	.	G	C	14291.349999999999	REJECT	NS=2;DP=376;DPB=433.0;AC=4;AN=4;AF=1.0;RO=0;AO=433;PRO=0.0;PAO=0.0;QR=0;QA=16524;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=217;SAR=216;SRP=0.0;SAP=3.01531;AB=0.0;ABP=0.0;RUN=1;RPP=20.4673;RPPR=0.0;RPL=246.0;RPR=187.0;EPP=3.61711;EPPR=0.0;DPRA=0.0;ODDS=73.5094;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993072;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8378;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.25;SOR=0.8655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:111:4174:-375.657,-30.0497,0.0:109:100:109:0,107:4269,321,0:1:.:1:.:.:.:-0.00757061	1/1:129.501:321:0:0:322:12350:-1110.79,-87.1924,0.0:321:100:321:0,320:13807,957,0:.:1:1:.:.:.:-0.0132393
chr12	6711147	.	C	A	1032.075	REJECT	NS=2;DP=302;DPB=347.0;AC=2;AN=4;AF=0.5;RO=274;AO=72;PRO=0.0;PAO=0.0;QR=10249;QA=2663;PQR=0.0;PQA=0.0;SRF=88;SRR=186;SAF=21;SAR=51;SRP=79.1228;SAP=30.1537;AB=0.207493;ABP=260.89;RUN=1;RPP=4.09604;RPPR=33.4743;RPL=39.0;RPR=33.0;EPP=4.9405;EPPR=5.57803;DPRA=0.0;ODDS=108.853;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9854;PAIRED=1.0;PAIREDR=0.989051;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7375;Dels=0.03;FS=1.1655;HaplotypeScore=39.7426;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.415;QD=4.11;ReadPosRankSum=0.0025;SOR=0.8655;ClippingRankSum=1.639	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:61:2248:37:1369:-96.6997,0.0,-175.835:28:31:89:60,20:589,0,2089:1:.:1:.:.:.:-0.00757061	0/1:129.501:249:213:8001:35:1294:-49.2797,0.0,-652.598:35:14:248:213,35:717,0,8169:.:1:1:.:.:.:-0.0132393
chr12	7502208	.	G	A	13008.05	REJECT	NS=2;DP=347;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=401;PRO=0.0;PAO=0.0;QR=0;QA=15264;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=204;SRP=0.0;SAP=3.27564;AB=0.0;ABP=0.0;RUN=1;RPP=3.66553;RPPR=0.0;RPL=206.0;RPR=195.0;EPP=13.0229;EPPR=0.0;DPRA=0.0;ODDS=70.4494;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990025;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8463;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.89;SOR=0.948	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:106:4042:-363.807,-28.7207,0.0:104:100:104:0,103:4173,309,0:1:.:1:.:.:.:-0.00757061	1/1:129.501:294:0:0:295:11222:-1009.31,-79.8336,0.0:294:100:294:0,293:12366,855,0:.:1:1:.:.:.:-0.0132393
chr12	12007343	.	G	C	4603.64	REJECT	NS=2;DP=286;DPB=324.0;AC=2;AN=4;AF=0.5;RO=159;AO=164;PRO=0.0;PAO=0.0;QR=6105;QA=6185;PQR=0.0;PQA=0.0;SRF=96;SRR=63;SAF=101;SAR=63;SRP=17.8828;SAP=22.1298;AB=0.506173;ABP=3.11753;RUN=1;RPP=8.30657;RPPR=7.9405;RPL=72.0;RPR=92.0;EPP=5.60547;EPPR=19.7402;DPRA=0.0;ODDS=223.955;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993902;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0385;Dels=0.0;FS=4.989;HaplotypeScore=11.5685;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4485;QD=16.885;ReadPosRankSum=1.356;SOR=1.119;ClippingRankSum=-0.851	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:42:1633:35:1335:-99.3222,0.0,-126.168:34:45:76:42,34:1169,0,1473:1:.:1:.:.:.:-0.00757061	0/1:129.501:247:117:4472:129:4850:-369.665,0.0,-335.672:129:52:246:117,129:4681,0,4268:.:1:1:.:.:.:-0.0132393
chr12	12007893	.	C	G	2358.0	PASS	SOMATIC;NS=2;DP=362;DPB=362.0;AC=1;AN=3;AF=0.25;RO=270;AO=92;PRO=0.0;PAO=0.0;QR=10306;QA=3521;PQR=0.0;PQA=0.0;SRF=112;SRR=158;SAF=35;SAR=57;SRP=20.0282;SAP=14.4341;AB=0.335766;ABP=67.2035;RUN=1;RPP=3.0103;RPPR=6.2273;RPL=46.0;RPR=46.0;EPP=7.63648;EPPR=15.8783;DPRA=3.11364;ODDS=55.8671;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.956522;PAIREDR=0.981481;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.228;Dels=0.0;FS=0.493;HaplotypeScore=3.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.063;QD=11.22;ReadPosRankSum=-1.289;SOR=0.811	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.427:87:88:3337:0:0:0.0,-23.8368,-300.409:0:0:87:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:121.7135:267:182:6969:92:3521:-242.519,0.0,-552.645:89:34:267:175,88:38.0:0.336:2:3023,0,6795:.:1:1:.:.:1:-0.0132393
chr12	12008071	.	T	A	26.8715	REJECT	NS=2;DP=55;DPB=58.6667;AC=2;AN=2;AF=0.0;RO=45;AO=3;PRO=2.0;PAO=0.0;QR=1434;QA=48;PQR=69.5;PQA=0.0;SRF=25;SRR=20;SAF=0;SAR=3;SRP=4.21667;SAP=9.52472;AB=0.0571429;ABP=62.6327;RUN=1;RPP=9.52472;RPPR=4.21667;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=8.84915;DPRA=0.0;ODDS=6.1826;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=3;MEANALT=3.5;LEN=1;MQM=46.6667;MQMR=50.4444;PAIRED=1.0;PAIREDR=0.977778;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.6684:20:17:568:1:16:0.0,-3.44045,-48.9892:1:5:20:.:.:1:.:.:.:-0.00757061	./1:24.6602:35:28:866:2:32:-5.76425,-13.1736,-104.825:2:6:33:.:.:1:.:.:.:-0.0132393
chr12	12008071	.	TAC	AAA	26.8715	REJECT	NS=2;DP=55;DPB=58.6667;AC=2;AN=2;AF=0.0;RO=45;AO=3;PRO=2.0;PAO=1.5;QR=1434;QA=55;PQR=69.5;PQA=36.0;SRF=25;SRR=20;SAF=0;SAR=3;SRP=4.21667;SAP=9.52472;AB=0.0285714;ABP=70.5741;RUN=1;RPP=9.52472;RPPR=4.21667;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=8.84915;DPRA=0.0;ODDS=6.1826;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=3;MEANALT=3.5;LEN=3;MQM=46.6667;MQMR=50.4444;PAIRED=1.0;PAIREDR=0.977778;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.6684:20:17:568:2:41:0.0,-1.46899,-46.7521:2:10:20:.:.:1:.:.:.:-0.00757061	./1:24.6602:35:28:866:1:14:-5.76425,-3.164,-94.235:1:3:33:.:.:1:.:.:.:-0.0132393
chr12	12008073	.	C	A	26.8715	PASS	SOMATIC;NS=2;DP=55;DPB=58.6667;AC=2;AN=3;AF=0.25;RO=45;AO=2;PRO=2.0;PAO=3.5;QR=1434;QA=28;PQR=69.5;PQA=105.5;SRF=25;SRR=20;SAF=0;SAR=2;SRP=4.21667;SAP=7.35324;AB=0.0571429;ABP=62.6327;RUN=1;RPP=3.0103;RPPR=4.21667;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=8.84915;DPRA=1.75;ODDS=6.1826;GTI=0;TYPE=snp;CIGAR=2M1X;NUMALT=3;MEANALT=5.0;LEN=1;MQM=53.0;MQMR=50.4444;PAIRED=1.0;PAIREDR=0.977778;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:28.6684:20:17:568:0:0:0.0,-4.6145,-50.4256:0:0:20:.:.:1:.:.:.:-0.00757061	0/1:24.6602:35:28:866:2:28:-5.76425,0.0,-68.0449:2:6:33:.:.:1:.:.:.:-0.0132393
chr12	12008073	.	CA	C	359.73	PASS	SOMATIC;DP=87;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=2.448;FS=4.658;MLEAC=1;MLEAF=0.5;MQ=52.12;MQRankSum=-0.013;QD=4.13;RPA=17,16;RU=A;ReadPosRankSum=0.622;SOR=0.531;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00757061	0/1:36,37:83:99.0:397,0,365:37:51:73:.:1:.:.:.:.:-0.0132393
chr12	12008218	.	C	T	952.17	REJECT	NS=2;DP=180;DPB=203.0;AC=2;AN=4;AF=0.5;RO=152;AO=51;PRO=0.0;PAO=0.0;QR=5753;QA=1939;PQR=0.0;PQA=0.0;SRF=114;SRR=38;SAF=33;SAR=18;SRP=85.5263;SAP=12.5903;AB=0.251232;ABP=112.129;RUN=1;RPP=4.07475;RPPR=19.5249;RPL=23.0;RPR=28.0;EPP=3.3935;EPPR=7.63896;DPRA=0.0;ODDS=120.095;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.960784;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.205;Dels=0.0;FS=3.1295;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.168;QD=10.795;ReadPosRankSum=0.058;SOR=0.4245;ClippingRankSum=1.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:45:22:761:23:867:-65.967,0.0,-56.3862:23:51:45:22,23:799,0,698:1:.:1:.:.:.:-0.00757061	0/1:129.501:158:130:4992:28:1072:-53.6485,0.0,-406.356:28:18:158:130,28:733,0,5119:.:1:1:.:.:.:-0.0132393
chr12	12008864	.	G	A	3592.59	PASS	SOMATIC;NS=2;DP=547;DPB=547.0;AC=1;AN=3;AF=0.25;RO=408;AO=139;PRO=0.0;PAO=0.0;QR=15583;QA=5311;PQR=0.0;PQA=0.0;SRF=189;SRR=219;SAF=65;SAR=74;SRP=7.80031;SAP=4.27569;AB=0.336562;ABP=98.8337;RUN=1;RPP=11.2744;RPPR=3.54252;RPL=58.0;RPR=81.0;EPP=5.65044;EPPR=3.0103;DPRA=3.08209;ODDS=84.5536;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992647;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.371;Dels=0.0;FS=0.0;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.201;QD=11.42;ReadPosRankSum=-1.29;SOR=0.727	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:130:134:5109:0:0:0.0,-36.2952,-459.733:0:0:130:126,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:129.501:412:274:10474:139:5311:-365.858,0.0,-830.157:139:34:412:264,135:38.0:0.34:2:4734,0,10393:.:1:1:.:.:1:-0.0132393
chr12	12009529	.	A	G	5566.855	REJECT	NS=2;DP=367;DPB=419.0;AC=2;AN=4;AF=0.5;RO=213;AO=205;PRO=0.0;PAO=0.0;QR=8318;QA=7838;PQR=0.0;PQA=0.0;SRF=123;SRR=90;SAF=102;SAR=103;SRP=14.1123;SAP=3.02089;AB=0.48926;ABP=3.43008;RUN=1;RPP=3.10563;RPPR=3.26517;RPL=101.0;RPR=104.0;EPP=3.02089;EPPR=4.73321;DPRA=0.0;ODDS=280.296;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.182;Dels=0.0;FS=6.7535;HaplotypeScore=9.8651;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.623;QD=18.61;ReadPosRankSum=1.181;SOR=0.413;ClippingRankSum=0.275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7355:100:43:1673:59:2263:-176.037,0.0,-122.954:58:58:99:40,57:2060,0,1381:1:.:1:.:.:.:-0.00757061	0/1:117.7355:316:170:6645:146:5575:-415.832,0.0,-512.079:146:46:316:170,146:5304,0,6511:.:1:1:.:.:.:-0.0132393
chr12	12009874	.	G	A	3663.64	PASS	SOMATIC;NS=2;DP=523;DPB=523.0;AC=1;AN=3;AF=0.25;RO=383;AO=140;PRO=0.0;PAO=0.0;QR=14714;QA=5336;PQR=0.0;PQA=0.0;SRF=198;SRR=185;SAF=70;SAR=70;SRP=3.96847;SAP=3.0103;AB=0.350877;ABP=80.0785;RUN=1;RPP=3.56868;RPPR=3.15204;RPL=67.0;RPR=73.0;EPP=3.56868;EPPR=3.46954;DPRA=3.21774;ODDS=78.3391;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994778;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.136;Dels=0.0;FS=2.221;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.487;QD=11.94;ReadPosRankSum=-0.667;SOR=0.571	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.142:121:124:4745:0:0:0.0,-33.5963,-427.014:0:0:121:119,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:120.071:399:259:9969:140:5336:-371.865,0.0,-788.528:140:35:399:248,135:38.0:0.354:2:4794,0,9953:.:1:1:.:.:1:-0.0132393
chr12	12010056	.	G	A	3113.27	PASS	SOMATIC;NS=2;DP=480;DPB=480.0;AC=1;AN=3;AF=0.25;RO=361;AO=119;PRO=0.0;PAO=0.0;QR=13952;QA=4599;PQR=0.0;PQA=0.0;SRF=176;SRR=185;SAF=54;SAR=65;SRP=3.49753;SAP=5.21827;AB=0.333333;ABP=89.1454;RUN=1;RPP=3.90444;RPPR=6.76977;RPL=56.0;RPR=63.0;EPP=3.02855;EPPR=4.74868;DPRA=2.90244;ODDS=77.7337;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.97479;PAIREDR=0.99446;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.299;Dels=0.0;FS=2.411;HaplotypeScore=6.8816;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.84;QD=11.22;ReadPosRankSum=-0.304;SOR=0.828	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:120:123:4721:0:0:0.0,-33.3334,-424.872:0:0:120:117,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:129.501:354:238:9231:119:4599:-316.922,0.0,-733.54:117:33:354:227,113:38.0:0.335:2:3999,0,9241:.:1:1:.:.:1:-0.0132393
chr12	12010544	.	G	T	3609.73	PASS	SOMATIC;NS=2;DP=539;DPB=539.0;AC=1;AN=3;AF=0.25;RO=399;AO=140;PRO=0.0;PAO=0.0;QR=15117;QA=5266;PQR=0.0;PQA=0.0;SRF=215;SRR=184;SAF=69;SAR=71;SRP=8.24034;SAP=3.07234;AB=0.35443;ABP=75.7134;RUN=1;RPP=6.05036;RPPR=3.05928;RPL=77.0;RPR=63.0;EPP=3.25847;EPPR=8.93695;DPRA=2.74306;ODDS=90.7708;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992857;PAIREDR=0.989975;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.405;Dels=0.0;FS=2.277;HaplotypeScore=8.7566;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.749;QD=11.75;ReadPosRankSum=0.006;SOR=0.606	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.573:139:144:5489:0:0:0.0,-38.9953,-493.897:0:0:139:135,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:118.2865:394:255:9628:140:5266:-366.696,0.0,-759.015:139:35:394:246,132:37.0:0.345:2:4656,0,9549:.:1:1:.:.:1:-0.0132393
chr12	12010736	.	C	T	17600.699999999997	REJECT	NS=2;DP=468;DPB=538.0;AC=4;AN=4;AF=1.0;RO=0;AO=538;PRO=0.0;PAO=0.0;QR=0;QA=20468;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=271;SAR=267;SRP=0.0;SAP=3.07488;AB=0.0;ABP=0.0;RUN=1;RPP=26.3234;RPPR=0.0;RPL=307.0;RPR=231.0;EPP=3.80139;EPPR=0.0;DPRA=0.0;ODDS=91.6057;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994424;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9658;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.3;SOR=0.8345	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.634:138:0:0:140:5338:-480.311,-37.9088,0.0:138:100:138:0,137:5641,411,0:1:.:1:.:.:.:-0.00757061	1/1:124.634:398:0:0:398:15130:-1360.36,-107.369,0.0:398:100:398:0,398:16891,1174,0:.:1:1:.:.:.:-0.0132393
chr12	12011325	.	A	AATAT	4307.73	PASS	SOMATIC;DP=326;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-1.444;FS=5.929;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.724;QD=9.91;RPA=7,9;RU=AT;ReadPosRankSum=0.512;SOR=1.337;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00757061	0/1:142,117:326:99.0:4345,0,7371:117:45:259:.:1:.:.:.:.:-0.0132393
chr12	12011339	.	T	TA	814.73	PASS	DP=94;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=0.629;FS=4.259;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.864;QD=8.67;ReadPosRankSum=1.185;SOR=1.123;ClippingRankSum=1.384	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59,30:89:99.0:852,0,3318:30:34:89:1:.:.:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12011340	.	T	A	5367.77	PASS	SOMATIC;DP=299;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.788;Dels=0.0;FS=0.42;HaplotypeScore=26.5426;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-2.071;QD=17.95;ReadPosRankSum=1.479;SOR=0.73	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00757061	0/1:155,144:299:99.0:5396,0,5808:144:48:299:.:1:.:.:.:.:-0.0132393
chr12	12011340	.	T	TA	1092.73	PASS	DP=94;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=0.415;FS=3.285;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.95;QD=11.62;ReadPosRankSum=1.979;SOR=1.005;ClippingRankSum=-0.635	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:58,36:94:99.0:1130,0,3240:36:38:94:1:.:.:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12011340	.	T	ATA	4278.16	REJECT	NS=2;DP=275;DPB=400.0;AC=2;AN=4;AF=0.5;RO=120;AO=99;PRO=111.667;PAO=72.1667;QR=4541;QA=3539;PQR=4010.33;PQA=2544.33;SRF=55;SRR=65;SAF=50;SAR=49;SRP=4.81986;SAP=3.03223;AB=0.36;ABP=49.8272;RUN=1;RPP=7.94546;RPPR=3.08268;RPL=57.0;RPR=42.0;EPP=3.03223;EPPR=13.4334;DPRA=0.0;ODDS=156.972;GTI=0;TYPE=complex;CIGAR=1M2I14M1X12M;NUMALT=2;MEANALT=15.5;LEN=30;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:136.014:60:29:1091:19:692:-90.1079,0.0,-150.093:19:38:50:.:.:1:.:.:.:-0.00757061	0/1:136.014:215:91:3450:80:2847:-343.795,0.0,-387.071:80:44:182:.:.:1:.:.:.:-0.0132393
chr12	12011340	.	T	ATATA	4278.16	REJECT	NS=2;DP=275;DPB=400.0;AC=2;AN=2;AF=0.0;RO=120;AO=13;PRO=111.667;PAO=56.1667;QR=4541;QA=438;PQR=4010.33;PQA=1975.33;SRF=55;SRR=65;SAF=4;SAR=9;SRP=4.81986;SAP=7.18621;AB=0.0472727;ABP=492.587;RUN=1;RPP=4.51363;RPPR=3.08268;RPL=8.0;RPR=5.0;EPP=4.51363;EPPR=13.4334;DPRA=0.0;ODDS=156.972;GTI=0;TYPE=complex;CIGAR=1M4I14M1X12M;NUMALT=2;MEANALT=15.5;LEN=32;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.014:60:29:1091:2:62:-90.1079,-68.2055,-224.514:2:4:50:.:.:1:.:.:.:-0.00757061	./1:136.014:215:91:3450:11:376:-343.795,-234.253,-642.667:11:6:182:.:.:1:.:.:.:-0.0132393
chr12	12011520	.	G	A	5462.59	REJECT	NS=2;DP=375;DPB=432.0;AC=2;AN=4;AF=0.5;RO=234;AO=198;PRO=0.0;PAO=0.0;QR=8756;QA=7599;PQR=0.0;PQA=0.0;SRF=116;SRR=118;SAF=96;SAR=102;SRP=3.04742;SAP=3.40511;AB=0.458333;ABP=9.52472;RUN=1;RPP=3.71219;RPPR=3.0103;RPL=95.0;RPR=103.0;EPP=4.58955;EPPR=3.60421;DPRA=0.0;ODDS=339.146;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.995726;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.603;Dels=0.0;FS=2.7085;HaplotypeScore=6.779;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.317;QD=16.19;ReadPosRankSum=0.509;SOR=0.75;ClippingRankSum=0.395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:63:2365:51:1979:-147.229,0.0,-181.959:51:45:113:62,51:1796,0,2172:1:.:1:.:.:.:-0.00757061	0/1:129.501:318:171:6391:147:5620:-419.42,0.0,-488.731:147:46:318:171,147:5350,0,6131:.:1:1:.:.:.:-0.0132393
chr12	12011764	.	TGAG	T	5949.73	PASS	DP=337;AC=2;AN=4;AF=0.5;MQ0=0;END=12011767;HOMLEN=3;HOMSEQ=GAG;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=1.726;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=0.325;QD=17.65;RPA=2,1;RU=GAG;ReadPosRankSum=0.495;SOR=0.672;STR	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:51,80:80:61:131:.:.:.:.:.:.:1:.:.:-0.00757061	0/1:175,171:171:49:346:337:99.0:5987,0,9129:.:1:.:1:.:.:-0.0132393
chr12	12011766	.	AG	A	2154.73	PASS	DP=109;AC=1;AN=4;AF=0.5;BaseQRankSum=1.992;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=-0.658;QD=19.77;ReadPosRankSum=1.233;SOR=0.519;ClippingRankSum=0.724	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,56:109:99.0:2192,0,2543:56:51:109:1:.:.:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12011768	.	GAGAA	AG	5268.74	REJECT	NS=2;DP=395;DPB=370.889;AC=2;AN=4;AF=0.5;RO=209;AO=181;PRO=49.0;PAO=27.0;QR=7913;QA=6585;PQR=1672.5;PQA=1009.5;SRF=85;SRR=124;SAF=80;SAR=101;SRP=18.8132;SAP=8.30101;AB=0.458228;ABP=8.99697;RUN=1;RPP=3.31023;RPPR=3.85188;RPL=88.0;RPR=93.0;EPP=3.11827;EPPR=4.26747;DPRA=0.0;ODDS=328.172;GTI=0;TYPE=complex;CIGAR=1M3D4M1X;NUMALT=1;MEANALT=3.5;LEN=6;MQM=60.663;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995215;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:99:46:1747:51:1823:-142.861,0.0,-149.809:51:53:97:.:.:1:.:.:.:-0.00757061	0/1:160.002:296:163:6166:130:4762:-390.564,0.0,-541.515:130:44:293:.:.:1:.:.:.:-0.0132393
chr12	12011770	.	GAA	G	2151.73	PASS	DP=109;AC=1;AN=4;AF=0.5;BaseQRankSum=1.682;FS=2.499;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.9;QD=19.74;ReadPosRankSum=1.165;SOR=0.461;ClippingRankSum=-0.252	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,56:109:99.0:2189,0,2579:56:51:109:1:.:.:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12011772	.	A	G	4963.77	PASS	SOMATIC;DP=315;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.477;Dels=0.0;FS=0.418;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.173;QD=15.76;ReadPosRankSum=0.892;SOR=0.642	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00757061	0/1:177,138:315:99.0:4992,0,6520:138:44:315:.:1:.:.:.:.:-0.0132393
chr12	12012053	.	G	C	2271.24	REJECT	NS=2;DP=88;DPB=99.0;AC=4;AN=4;AF=1.0;RO=9;AO=87;PRO=0.0;PAO=0.0;QR=110;QA=2959;PQR=0.0;PQA=0.0;SRF=0;SRR=9;SAF=20;SAR=67;SRP=22.5536;SAP=58.1457;AB=0.0;ABP=0.0;RUN=1;RPP=166.769;RPPR=14.8328;RPL=84.0;RPR=3.0;EPP=73.1214;EPPR=14.8328;DPRA=0.0;ODDS=19.6721;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=58.2299;MQMR=33.1111;PAIRED=0.988506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.068;Dels=0.03;FS=0.0;HaplotypeScore=27.0526;MLEAC=2;MLEAF=1.0;MQ=56.755;MQRankSum=3.134;QD=31.43;ReadPosRankSum=1.518;SOR=0.641	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:69.71735:20:3:32:18:637:-55.3448,-3.95914,0.0:18:93:19:0,18:726,54,0:1:.:1:.:.:.:-0.00757061	1/1:121.4875:76:6:78:69:2322:-202.033,-13.2702,0.0:68:92:74:6,68:2457,181,0:.:1:1:.:.:.:-0.0132393
chr12	12012106	.	T	C	1076.67	REJECT	NS=2;DP=64;DPB=64.0;AC=2;AN=4;AF=0.5;RO=14;AO=50;PRO=0.0;PAO=0.0;QR=489;QA=1494;PQR=0.0;PQA=0.0;SRF=5;SRR=9;SAF=14;SAR=36;SRP=5.49198;SAP=24.0302;AB=0.78125;ABP=46.9826;RUN=1;RPP=9.26414;RPPR=18.5208;RPL=19.0;RPR=31.0;EPP=9.26414;EPPR=3.0103;DPRA=0.0;ODDS=25.8519;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.76;MQMR=55.7143;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.75;Dels=0.0;FS=0.0;HaplotypeScore=15.425;MLEAC=1;MLEAF=0.5;MQ=49.92;MQRankSum=-1.887;QD=21.44;ReadPosRankSum=-1.04;SOR=0.616	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.447:12:5:187:7:220:-16.4401,0.0,-13.7093:7:58:12:.:.:.:.:1:.:.:.:-0.00757061	0/1:105.6345:52:9:302:43:1274:-99.7441,0.0,-12.9851:43:83:52:9,43:1143,0,207:.:1:1:.:.:.:-0.0132393
chr12	12012681	.	T	C	6481.365	REJECT	NS=2;DP=397;DPB=449.0;AC=2;AN=4;AF=0.5;RO=221;AO=228;PRO=0.0;PAO=0.0;QR=8440;QA=8708;PQR=0.0;PQA=0.0;SRF=112;SRR=109;SAF=118;SAR=110;SRP=3.09873;SAP=3.61984;AB=0.507795;ABP=3.24728;RUN=1;RPP=4.38176;RPPR=5.84992;RPL=108.0;RPR=120.0;EPP=15.3534;EPPR=12.4528;DPRA=0.0;ODDS=341.97;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995614;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.013;Dels=0.0;FS=0.405;HaplotypeScore=9.6548;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2195;QD=18.45;ReadPosRankSum=0.478;SOR=0.703;ClippingRankSum=0.647	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:51:1971:51:1983:-150.847,0.0,-149.751:50:49:100:50,49:1845,0,1868:1:.:1:.:.:.:-0.00757061	0/1:129.501:346:170:6469:177:6725:-511.313,0.0,-487.87:176:51:346:170,176:6445,0,6193:.:1:1:.:.:.:-0.0132393
chr12	12012801	.	A	G	14191.8	REJECT	NS=2;DP=371;DPB=419.0;AC=4;AN=4;AF=1.0;RO=0;AO=419;PRO=0.0;PAO=0.0;QR=0;QA=16127;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=199;SAR=220;SRP=0.0;SAP=5.29579;AB=0.0;ABP=0.0;RUN=1;RPP=4.17637;RPPR=0.0;RPL=202.0;RPR=217.0;EPP=4.88119;EPPR=0.0;DPRA=0.0;ODDS=63.5852;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995227;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7902;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.78;SOR=0.9515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:95:3636:-327.291,-25.7396,0.0:94:100:94:0,93:3773,278,0:1:.:1:.:.:.:-0.00757061	1/1:129.501:323:0:0:324:12491:-1123.45,-87.7407,0.0:323:100:323:0,323:13952,963,0:.:1:1:.:.:.:-0.0132393
chr12	12013189	.	A	G	6175.435	REJECT	NS=2;DP=375;DPB=428.0;AC=2;AN=4;AF=0.5;RO=204;AO=224;PRO=0.0;PAO=0.0;QR=7463;QA=8511;PQR=0.0;PQA=0.0;SRF=101;SRR=103;SAF=119;SAR=105;SRP=3.05288;SAP=4.91034;AB=0.523364;ABP=5.03971;RUN=1;RPP=5.49198;RPPR=3.0103;RPL=120.0;RPR=104.0;EPP=20.1106;EPPR=10.206;DPRA=0.0;ODDS=246.37;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995536;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.1655;Dels=0.0;FS=2.72;HaplotypeScore=13.567;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3465;QD=19.93;ReadPosRankSum=0.4875;SOR=0.85;ClippingRankSum=-0.98	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:42:1514:63:2351:-183.568,0.0,-107.852:62:60:104:41,62:2243,0,1341:1:.:1:.:.:.:-0.00757061	0/1:129.501:323:162:5949:161:6160:-466.613,0.0,-447.662:161:50:323:162,161:5960,0,5699:.:1:1:.:.:.:-0.0132393
chr12	12013292	.	G	A	5743.285	REJECT	NS=2;DP=336;DPB=384.0;AC=2;AN=4;AF=0.5;RO=177;AO=207;PRO=0.0;PAO=0.0;QR=6508;QA=7899;PQR=0.0;PQA=0.0;SRF=93;SRR=84;SAF=89;SAR=118;SRP=4.00402;SAP=11.8326;AB=0.539062;ABP=8.09969;RUN=1;RPP=5.3706;RPPR=3.31701;RPL=111.0;RPR=96.0;EPP=7.63648;EPPR=5.08363;DPRA=0.0;ODDS=233.212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990338;PAIREDR=0.99435;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.01;Dels=0.0;FS=10.5135;HaplotypeScore=5.9646;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7145;QD=20.54;ReadPosRankSum=0.503;SOR=1.135;ClippingRankSum=0.323	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:39:1414:55:2133:-166.547,0.0,-101.824:54:58:93:39,54:2074,0,1234:1:.:1:.:.:.:-0.00757061	0/1:129.501:289:138:5094:152:5766:-440.181,0.0,-379.684:151:52:289:138,150:5524,0,4813:.:1:1:.:.:.:-0.0132393
chr12	12013498	.	C	CA	1278.75	REJECT	NS=2;DP=234;DPB=378.829;AC=2;AN=4;AF=0.5;RO=129;AO=56;PRO=106.333;PAO=72.3333;QR=4794;QA=1626;PQR=3790.25;PQA=2416.25;SRF=77;SRR=52;SAF=29;SAR=27;SRP=13.531;SAP=3.16541;AB=0.239316;ABP=141.131;RUN=1;RPP=12.937;RPPR=3.83512;RPL=20.0;RPR=36.0;EPP=3.16541;EPPR=9.08706;DPRA=0.0;ODDS=21.0727;GTI=0;TYPE=ins;CIGAR=1M1I34M;NUMALT=3;MEANALT=14.5;LEN=1;MQM=55.75;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.541;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=-3.438;QD=5.01;RPA=11,12;RU=A;ReadPosRankSum=1.591;SOR=0.663;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:88.7319:55:34:1257:8:239:-9.90951,0.0,-134.283:8:17:47:.:.:.:.:1:.:.:.:-0.00757061	0/1:129.501:232:95:3537:48:1387:-124.208,0.0,-394.284:73:35:203:147,99:1474,0,3195:.:1:1:.:.:.:-0.0132393
chr12	12013498	.	C	CAA	1278.75	PASS	SOMATIC;NS=2;DP=234;DPB=378.829;AC=2;AN=2;AF=0.0;RO=129;AO=12;PRO=106.333;PAO=62.3333;QR=4794;QA=366;PQR=3790.25;PQA=2161.25;SRF=77;SRR=52;SAF=7;SAR=5;SRP=13.531;SAP=3.73412;AB=0.0512821;ABP=412.249;RUN=1;RPP=14.5915;RPPR=3.83512;RPL=2.0;RPR=10.0;EPP=3.73412;EPPR=9.08706;DPRA=0.0;ODDS=21.0727;GTI=0;TYPE=ins;CIGAR=1M2I34M;NUMALT=3;MEANALT=14.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.7319:55:34:1257:1:34:-9.90951,-19.3171,-155.751:1:2:47:.:.:1:.:.:.:-0.00757061	./1:160.002:179:95:3537:11:332:-124.208,-101.316,-507.437:11:7:161:.:.:1:.:.:.:-0.0132393
chr12	12013498	.	CA	C	1278.75	REJECT	NS=2;DP=234;DPB=378.829;AC=2;AN=2;AF=0.0;RO=129;AO=11;PRO=106.333;PAO=58.0;QR=4794;QA=322;PQR=3790.25;PQA=2003.25;SRF=77;SRR=52;SAF=6;SAR=5;SRP=13.531;SAP=3.20771;AB=0.0470085;ABP=420.081;RUN=1;RPP=12.6832;RPPR=3.83512;RPL=2.0;RPR=9.0;EPP=3.20771;EPPR=9.08706;DPRA=0.0;ODDS=21.0727;GTI=0;TYPE=del;CIGAR=1M1D33M;NUMALT=3;MEANALT=14.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.7319:55:34:1257:4:115:-9.90951,-8.69755,-143.808:4:9:47:.:.:1:.:.:.:-0.00757061	./1:160.002:179:95:3537:7:207:-124.208,-142.18,-587.234:7:4:161:.:.:1:.:.:.:-0.0132393
chr12	12013572	.	G	A	12049.6	REJECT	NS=2;DP=441;DPB=491.0;AC=2;AN=4;AF=0.5;RO=98;AO=393;PRO=0.0;PAO=0.0;QR=3649;QA=15006;PQR=0.0;PQA=0.0;SRF=68;SRR=30;SAF=242;SAR=151;SRP=35.0063;SAP=48.7659;AB=0.800407;ABP=387.883;RUN=1;RPP=4.60713;RPPR=3.36483;RPL=188.0;RPR=205.0;EPP=9.02743;EPPR=3.0103;DPRA=0.0;ODDS=105.797;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0509;MQMR=60.0;PAIRED=0.992366;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.987;Dels=0.0;FS=2.9095;HaplotypeScore=5.8322;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.69;QD=25.43;ReadPosRankSum=-0.4555;SOR=0.4625;ClippingRankSum=-0.956	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:52:1940:46:1732:-129.371,0.0,-148.089:44:46:96:51,43:1560,0,1812:1:.:1:.:.:.:-0.00757061	0/1:129.501:392:46:1709:347:13274:-1087.44,0.0,-47.2913:347:88:392:45,347:13710,0,665:.:1:1:.:.:.:-0.0132393
chr12	12013612	.	G	A	6510.93	REJECT	NS=2;DP=469;DPB=531.0;AC=2;AN=4;AF=0.5;RO=292;AO=239;PRO=0.0;PAO=0.0;QR=11295;QA=9118;PQR=0.0;PQA=0.0;SRF=161;SRR=131;SAF=135;SAR=104;SRP=9.70319;SAP=11.7416;AB=0.450094;ABP=14.4974;RUN=1;RPP=3.01939;RPPR=4.91406;RPL=119.0;RPR=120.0;EPP=23.0805;EPPR=13.7487;DPRA=0.0;ODDS=402.314;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8973;PAIRED=1.0;PAIREDR=0.986301;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3295;Dels=0.0;FS=3.1865;HaplotypeScore=7.8604;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.527;QD=16.855;ReadPosRankSum=-0.1105;SOR=0.9155;ClippingRankSum=0.073	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:120:61:2327:62:2333:-176.646,0.0,-176.098:62:51:120:56,62:2206,0,2019:1:.:1:.:.:.:-0.00757061	0/1:129.501:408:231:8968:177:6785:-499.712,0.0,-695.893:177:43:408:231,177:6377,0,8848:.:1:1:.:.:.:-0.0132393
chr12	12013985	.	C	A	9818.485	REJECT	NS=2;DP=443;DPB=508.0;AC=3;AN=4;AF=0.75;RO=149;AO=357;PRO=0.0;PAO=0.0;QR=5691;QA=13471;PQR=0.0;PQA=0.0;SRF=74;SRR=75;SAF=163;SAR=194;SRP=3.02487;SAP=8.85564;AB=0.60686;ABP=40.6014;RUN=1;RPP=3.06504;RPPR=4.77371;RPL=180.0;RPR=177.0;EPP=6.22797;EPPR=5.47325;DPRA=0.0;ODDS=80.1593;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991597;PAIREDR=0.986577;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.387;Dels=0.0;FS=0.6265;HaplotypeScore=6.8565;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.818;QD=25.75;ReadPosRankSum=-1.696;SOR=0.858	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.1835:126:0:0:127:4772:-429.427,-34.3868,0.0:125:100:125:0,123:4965,369,0:1:.:1:.:.:.:-0.00757061	0/1:120.1835:378:149:5691:230:8699:-679.8,0.0,-409.228:230:61:378:148,230:8642,0,5162:.:1:1:.:.:.:-0.0132393
chr12	12014191	.	G	T	2769.335	REJECT	NS=2;DP=394;DPB=458.0;AC=2;AN=4;AF=0.5;RO=336;AO=120;PRO=0.0;PAO=0.0;QR=12585;QA=4583;PQR=0.0;PQA=0.0;SRF=170;SRR=166;SAF=53;SAR=67;SRP=3.1137;SAP=6.55704;AB=0.262009;ABP=228.331;RUN=1;RPP=10.2485;RPPR=10.4812;RPL=70.0;RPR=50.0;EPP=6.55704;EPPR=6.13825;DPRA=0.0;ODDS=144.748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0833;MQMR=60.0;PAIRED=0.991667;PAIREDR=0.991071;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9495;Dels=0.0;FS=4.0595;HaplotypeScore=7.8614;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=0.9495;QD=11.97;ReadPosRankSum=1.206;SOR=0.8445;ClippingRankSum=-1.748	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4245:127:53:2005:75:2885:-224.954,0.0,-145.742:75:59:127:52,75:2749,0,1666:1:.:1:.:.:.:-0.00757061	0/1:119.4245:330:283:10580:45:1698:-63.9792,0.0,-862.841:45:14:328:283,45:914,0,10817:.:1:1:.:.:.:-0.0132393
chr12	12014424	.	G	A	5549.99	REJECT	NS=2;DP=366;DPB=416.0;AC=2;AN=4;AF=0.5;RO=215;AO=201;PRO=0.0;PAO=0.0;QR=8367;QA=7608;PQR=0.0;PQA=0.0;SRF=104;SRR=111;SAF=108;SAR=93;SRP=3.50519;SAP=5.44105;AB=0.483173;ABP=4.0334;RUN=1;RPP=3.88537;RPPR=5.92916;RPL=96.0;RPR=105.0;EPP=3.53966;EPPR=4.23238;DPRA=0.0;ODDS=316.89;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99005;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.325;Dels=0.0;FS=3.4085;HaplotypeScore=3.913;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5265;QD=17.45;ReadPosRankSum=-0.194;SOR=0.6745;ClippingRankSum=0.949	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.448:98:51:1959:48:1827:-137.632,0.0,-149.503:47:48:98:50,47:1741,0,1785:1:.:1:.:.:.:-0.00757061	0/1:117.448:316:164:6408:153:5781:-434.122,0.0,-490.506:153:48:316:163,153:5475,0,6193:.:1:1:.:.:.:-0.0132393
chr12	12014774	.	T	C	1682.54	REJECT	NS=2;DP=409;DPB=468.0;AC=2;AN=4;AF=0.5;RO=380;AO=88;PRO=0.0;PAO=0.0;QR=14473;QA=3394;PQR=0.0;PQA=0.0;SRF=174;SRR=206;SAF=38;SAR=50;SRP=8.86185;SAP=6.56362;AB=0.188034;ABP=398.627;RUN=1;RPP=4.58955;RPPR=3.37602;RPL=40.0;RPR=48.0;EPP=4.58955;EPPR=3.10173;DPRA=0.0;ODDS=88.9314;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9658;PAIRED=1.0;PAIREDR=0.994737;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.414;Dels=0.0;FS=2.2985;HaplotypeScore=13.5668;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.38;QD=8.045;ReadPosRankSum=0.8345;SOR=0.765;ClippingRankSum=0.221	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:68:2560:49:1897:-139.022,0.0,-198.697:48:42:115:66,48:1669,0,2342:1:.:1:.:.:.:-0.00757061	0/1:129.501:351:312:11913:39:1497:-39.5905,0.0,-976.445:39:11:351:312,39:624,0,12259:.:1:1:.:.:.:-0.0132393
chr12	12014808	.	T	C	1902.6399999999999	REJECT	NS=2;DP=396;DPB=452.0;AC=2;AN=4;AF=0.5;RO=357;AO=95;PRO=0.0;PAO=0.0;QR=13604;QA=3637;PQR=0.0;PQA=0.0;SRF=165;SRR=192;SAF=40;SAR=55;SRP=7.44448;SAP=8.15326;AB=0.210177;ABP=332.786;RUN=1;RPP=3.03316;RPPR=14.2569;RPL=48.0;RPR=47.0;EPP=6.87324;EPPR=25.6435;DPRA=0.0;ODDS=124.188;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9636;PAIRED=1.0;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.235;Dels=0.0;FS=3.653;HaplotypeScore=5.8566;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.156;QD=9.435;ReadPosRankSum=0.539;SOR=0.88;ClippingRankSum=-1.619	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.667:110:59:2268:52:1998:-149.726,0.0,-174.031:52:47:110:58,52:1850,0,2115:1:.:1:.:.:.:-0.00757061	0/1:117.667:341:298:11336:43:1639:-55.0866,0.0,-927.262:43:13:341:298,43:815,0,11647:.:1:1:.:.:.:-0.0132393
chr12	12015401	.	G	A	7741.635	REJECT	NS=2;DP=343;DPB=393.0;AC=3;AN=4;AF=0.75;RO=111;AO=282;PRO=0.0;PAO=0.0;QR=4267;QA=10609;PQR=0.0;PQA=0.0;SRF=61;SRR=50;SAF=131;SAR=151;SRP=5.3774;SAP=6.0904;AB=0.623729;ABP=42.2367;RUN=1;RPP=22.2609;RPPR=13.359;RPL=116.0;RPR=166.0;EPP=4.98157;EPPR=7.41193;DPRA=0.0;ODDS=62.0784;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989362;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.736;Dels=0.0;FS=4.222;HaplotypeScore=6.8952;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.399;QD=28.07;ReadPosRankSum=1.167;SOR=0.741	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.0745:95:0:0:98:3676:-330.879,-26.5343,0.0:95:100:95:0,93:3840,278,0:1:.:1:.:.:.:-0.00757061	0/1:121.0745:294:111:4267:184:6933:-543.749,0.0,-303.924:184:62:294:110,184:6848,0,3829:.:1:1:.:.:.:-0.0132393
chr12	12015706	.	G	T	2708.94	PASS	SOMATIC;NS=2;DP=382;DPB=382.0;AC=1;AN=3;AF=0.25;RO=277;AO=105;PRO=0.0;PAO=0.0;QR=10623;QA=3926;PQR=0.0;PQA=0.0;SRF=158;SRR=119;SAF=63;SAR=42;SRP=14.9338;SAP=12.1305;AB=0.373665;ABP=41.9654;RUN=1;RPP=3.52732;RPPR=7.90983;RPL=50.0;RPR=55.0;EPP=3.19643;EPPR=18.8848;DPRA=2.78218;ODDS=64.0174;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990476;PAIREDR=0.98917;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-2.544;Dels=0.0;FS=1.497;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.75;QD=12.6;ReadPosRankSum=-0.53;SOR=0.802	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.087:98:101:3866:0:0:0.0,-27.3764,-347.993:0:0:98:95,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:120.0435:281:176:6757:105:3926:-277.077,0.0,-531.68:105:37:281:167,102:37.0:0.385:2:3569,0,6720:.:1:1:.:.:1:-0.0132393
chr12	12015905	.	A	G	3230.08	PASS	SOMATIC;NS=2;DP=478;DPB=478.0;AC=1;AN=3;AF=0.25;RO=354;AO=123;PRO=0.0;PAO=0.0;QR=13589;QA=4747;PQR=0.0;PQA=0.0;SRF=190;SRR=164;SAF=60;SAR=63;SRP=7.15695;SAP=3.16919;AB=0.338843;ABP=84.8981;RUN=1;RPP=5.99387;RPPR=3.23113;RPL=55.0;RPR=68.0;EPP=3.02795;EPPR=4.21258;DPRA=3.15652;ODDS=72.0784;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.356;Dels=0.0;FS=5.017;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.018;QD=11.61;ReadPosRankSum=1.809;SOR=0.565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:114:4321:0:0:0.0,-30.8773,-388.881:0:0:110:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:129.501:362:240:9268:123:4747:-328.629,0.0,-735.238:123:34:362:229,119:38.0:0.343:2:4232,0,9248:.:1:1:.:.:1:-0.0132393
chr12	12016008	.	G	A	11474.7	REJECT	NS=2;DP=428;DPB=487.0;AC=2;AN=4;AF=0.5;RO=113;AO=374;PRO=0.0;PAO=0.0;QR=4406;QA=14303;PQR=0.0;PQA=0.0;SRF=60;SRR=53;SAF=197;SAR=177;SRP=3.95191;SAP=5.33273;AB=0.767967;ABP=306.753;RUN=1;RPP=4.14829;RPPR=3.18325;RPL=180.0;RPR=194.0;EPP=6.3546;EPPR=3.95191;DPRA=0.0;ODDS=124.179;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997326;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.006;Dels=0.0;FS=2.72;HaplotypeScore=8.765;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0785;QD=24.275;ReadPosRankSum=1.086;SOR=0.796;ClippingRankSum=0.12	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:69:2691:49:1847:-134.249,0.0,-210.194:49:42:118:69,49:1648,0,2337:1:.:1:.:.:.:-0.00757061	0/1:129.501:369:44:1715:325:12456:-1020.36,0.0,-54.3212:325:88:369:44,325:12877,0,823:.:1:1:.:.:.:-0.0132393
chr12	12016045	.	C	T	7081.92	REJECT	NS=2;DP=427;DPB=488.0;AC=2;AN=4;AF=0.5;RO=245;AO=243;PRO=0.0;PAO=0.0;QR=9379;QA=9421;PQR=0.0;PQA=0.0;SRF=124;SRR=121;SAF=117;SAR=126;SRP=3.09007;SAP=3.73412;AB=0.497951;ABP=3.0281;RUN=1;RPP=5.02092;RPPR=4.08274;RPL=129.0;RPR=114.0;EPP=4.09157;EPPR=3.23188;DPRA=0.0;ODDS=360.442;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995885;PAIREDR=0.995918;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2395;Dels=0.0;FS=5.672;HaplotypeScore=6.9298;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.706;QD=17.785;ReadPosRankSum=-0.224;SOR=0.4805;ClippingRankSum=0.305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:66:2517:55:2106:-156.747,0.0,-193.724:55:45:121:66,55:1992,0,2415:1:.:1:.:.:.:-0.00757061	0/1:129.501:366:179:6862:188:7315:-558.516,0.0,-517.751:188:51:366:178,188:7105,0,6501:.:1:1:.:.:.:-0.0132393
chr12	12016183	.	G	T	8110.56	REJECT	NS=2;DP=461;DPB=525.0;AC=2;AN=4;AF=0.5;RO=246;AO=279;PRO=0.0;PAO=0.0;QR=9375;QA=10778;PQR=0.0;PQA=0.0;SRF=126;SRR=120;SAF=136;SAR=143;SRP=3.32808;SAP=3.39167;AB=0.531429;ABP=7.51455;RUN=1;RPP=4.76149;RPPR=3.32808;RPL=147.0;RPR=132.0;EPP=7.12754;EPPR=7.28263;DPRA=0.0;ODDS=404.978;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0605;Dels=0.0;FS=0.5965;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6545;QD=19.13;ReadPosRankSum=-0.804;SOR=0.721;ClippingRankSum=-0.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9365:124:61:2339:65:2524:-193.005,0.0,-176.331:64:52:124:59,64:2269,0,2096:1:.:1:.:.:.:-0.00757061	0/1:118.9365:398:185:7036:214:8254:-634.318,0.0,-524.752:214:54:398:183,214:8045,0,6538:.:1:1:.:.:.:-0.0132393
chr12	12017285	.	T	C	15057.0	REJECT	NS=2;DP=401;DPB=459.0;AC=4;AN=4;AF=1.0;RO=2;AO=457;PRO=0.0;PAO=0.0;QR=54;QA=17448;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=226;SAR=231;SRP=7.35324;SAP=3.12909;AB=0.0;ABP=0.0;RUN=1;RPP=3.01505;RPPR=3.0103;RPL=228.0;RPR=229.0;EPP=4.07941;EPPR=3.0103;DPRA=0.0;ODDS=76.1064;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997812;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.682;Dels=0.0;FS=0.0;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.631;QD=32.925;ReadPosRankSum=1.429;SOR=0.504	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:115:4432:-398.896,-31.1775,0.0:113:100:113:0,112:4742,337,0:1:.:1:.:.:.:-0.00757061	1/1:129.501:343:2:54:342:13016:-1165.83,-88.2745,0.0:342:99:343:1,342:14527,1011,0:.:1:1:.:.:.:-0.0132393
chr12	12017687	.	TA	T	2162.84	REJECT	NS=2;DP=385;DPB=457.625;AC=2;AN=4;AF=0.5;RO=241;AO=117;PRO=72.5;PAO=60.5;QR=9069;QA=4338;PQR=2539.5;PQA=2111.5;SRF=110;SRR=131;SAF=47;SAR=70;SRP=6.98382;SAP=12.8283;AB=0.291771;ABP=154.033;RUN=1;RPP=8.37402;RPPR=5.61426;RPL=67.0;RPR=50.0;EPP=31.2394;EPPR=4.10054;DPRA=0.0;ODDS=226.406;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=9.0;LEN=1;MQM=60.5128;MQMR=59.9336;PAIRED=1.0;PAIREDR=0.995851;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.051;FS=4.643;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=-0.1375;QD=5.74;RPA=12,11;RU=A;ReadPosRankSum=0.087;SOR=0.951;STR;ClippingRankSum=0.011	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.778:82:40:1505:35:1259:-98.94,0.0,-120.849:36:47:77:42,38:766,0,832:1:.:1:.:.:.:-0.00757061	0/1:120.778:342:201:7564:82:3079:-200.021,0.0,-642.037:87:28:305:235,93:1474,0,4977:.:1:1:.:.:.:-0.0132393
chr12	12017753	.	A	G	1997.34	REJECT	NS=2;DP=402;DPB=466.0;AC=2;AN=4;AF=0.5;RO=366;AO=100;PRO=0.0;PAO=0.0;QR=13752;QA=3787;PQR=0.0;PQA=0.0;SRF=191;SRR=175;SAF=60;SAR=40;SRP=4.52914;SAP=11.6962;AB=0.214592;ABP=332.72;RUN=1;RPP=5.18177;RPPR=3.86465;RPL=45.0;RPR=55.0;EPP=3.09716;EPPR=3.03403;DPRA=0.0;ODDS=106.349;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.3;MQMR=60.082;PAIRED=0.99;PAIREDR=0.994536;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4005;Dels=0.0;FS=6.4385;HaplotypeScore=15.528;MLEAC=1;MLEAF=0.5;MQ=60.125;MQRankSum=-0.7445;QD=8.76;ReadPosRankSum=1.335;SOR=1.069;ClippingRankSum=2.341	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:125:68:2545:59:2238:-167.011,0.0,-194.634:58:46:125:67,57:1944,0,2358:1:.:1:.:.:.:-0.00757061	0/1:129.501:339:298:11207:41:1549:-47.5681,0.0,-916.239:41:12:339:298,41:731,0,11469:.:1:1:.:.:.:-0.0132393
chr12	12018042	.	A	G	2503.87	REJECT	NS=2;DP=74;DPB=92.0;AC=4;AN=4;AF=1.0;RO=0;AO=92;PRO=0.0;PAO=0.0;QR=0;QA=3238;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=39;SAR=53;SRP=0.0;SAP=7.63648;AB=0.0;ABP=0.0;RUN=1;RPP=4.52089;RPPR=0.0;RPL=42.0;RPR=50.0;EPP=18.9659;EPPR=0.0;DPRA=0.0;ODDS=26.0417;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=51.5326;MQMR=0.0;PAIRED=0.98913;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9304;MLEAC=2;MLEAF=1.0;MQ=53.075;QD=34.7;SOR=1.122	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:104.049:33:0:0:35:1207:-104.918,-9.43471,0.0:33:100:33:0,32:1277,95,0:1:.:1:.:.:.:-0.00757061	1/1:123.161:57:0:0:57:2031:-179.831,-15.4303,0.0:57:100:57:0,57:2243,163,0:.:1:1:.:.:.:-0.0132393
chr12	12018184	.	C	A	121.567	REJECT	NS=2;DP=107;DPB=191.667;AC=2;AN=2;AF=0.0;RO=20;AO=7;PRO=34.8;PAO=16.5333;QR=710;QA=85;PQR=1238.25;PQA=558.783;SRF=15;SRR=5;SAF=0;SAR=7;SRP=13.8677;SAP=18.2106;AB=0.0654206;ABP=178.534;RUN=1;RPP=5.80219;RPPR=30.8051;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=13.8677;DPRA=0.0;ODDS=13.0566;GTI=0;TYPE=snp;CIGAR=1X26M;NUMALT=5;MEANALT=29.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5486:35:6:215:1:14:-7.63091,-30.2467,-294.565:1:5:19:.:.:1:.:.:.:-0.00757061	./1:57.4513:72:14:495:6:71:-9.60042,-50.906,-553.056:6:17:36:.:.:1:.:.:.:-0.0132393
chr12	12018184	.	C	CA	121.567	REJECT	NS=2;DP=107;DPB=191.667;AC=2;AN=3;AF=0.25;RO=20;AO=5;PRO=34.8;PAO=33.3;QR=710;QA=137;PQR=1238.25;PQA=1187.25;SRF=15;SRR=5;SAF=5;SAR=0;SRP=13.8677;SAP=13.8677;AB=0.046729;ABP=193.958;RUN=1;RPP=3.44459;RPPR=30.8051;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=13.8677;DPRA=0.0;ODDS=13.0566;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=5;MEANALT=29.0;LEN=1;MQM=56.4;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5486:35:6:215:2:46:-7.63091,-5.92861,-26.2004:2:11:19:.:.:1:.:.:.:-0.00757061	0/1:57.4513:72:14:495:3:91:-9.60042,0.0,-42.0525:3:8:36:.:.:1:.:.:.:-0.0132393
chr12	12018184	.	CA	C	121.567	REJECT	NS=2;DP=107;DPB=191.667;AC=2;AN=3;AF=0.25;RO=20;AO=16;PRO=34.8;PAO=23.8;QR=710;QA=487;PQR=1238.25;PQA=834.25;SRF=15;SRR=5;SAF=13;SAR=3;SRP=13.8677;SAP=16.582;AB=0.149533;ABP=117.165;RUN=1;RPP=11.6962;RPPR=30.8051;RPL=4.0;RPR=12.0;EPP=3.55317;EPPR=13.8677;DPRA=0.0;ODDS=13.0566;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=5;MEANALT=29.0;LEN=1;MQM=59.4375;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.458;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.63;MQRankSum=0.106;QD=2.1;ReadPosRankSum=0.669;SOR=1.179;ClippingRankSum=0.599	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:77.2743:33:6:215:5:150:-7.63091,0.0,-80.5005:9:35:25:18,14:134,0,266:1:.:1:.:.:.:-0.00757061	./1:57.4513:72:14:495:11:337:-9.60042,-4.13747,-295.986:11:31:36:.:.:.:.:1:.:.:.:-0.0132393
chr12	12018184	.	CAA	C	121.567	REJECT	NS=2;DP=107;DPB=191.667;AC=2;AN=2;AF=0.0;RO=20;AO=4;PRO=34.8;PAO=20.3;QR=710;QA=128;PQR=1238.25;PQA=708.5;SRF=15;SRR=5;SAF=4;SAR=0;SRP=13.8677;SAP=11.6962;AB=0.0373832;ABP=201.913;RUN=1;RPP=11.6962;RPPR=30.8051;RPL=0.0;RPR=4.0;EPP=11.6962;EPPR=13.8677;DPRA=0.0;ODDS=13.0566;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=5;MEANALT=29.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5486:35:6:215:2:52:-7.63091,-10.371,-117.094:2:11:19:.:.:1:.:.:.:-0.00757061	./1:57.4513:72:14:495:2:76:-9.60042,-35.28,-375.281:2:6:36:.:.:1:.:.:.:-0.0132393
chr12	12018204	.	T	A	121.567	REJECT	NS=2;DP=107;DPB=191.667;AC=2;AN=2;AF=0.0;RO=20;AO=3;PRO=34.8;PAO=25.2667;QR=710;QA=42;PQR=1238.25;PQA=840.967;SRF=15;SRR=5;SAF=3;SAR=0;SRP=13.8677;SAP=9.52472;AB=0.0857143;ABP=55.1877;RUN=1;RPP=9.52472;RPPR=30.8051;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=13.8677;DPRA=0.0;ODDS=13.0566;GTI=0;TYPE=snp;CIGAR=20M1X6M;NUMALT=5;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5486:35:6:215:3:42:-7.63091,-20.8553,-228.775:3:16:19:.:.:1:.:.:.:-0.00757061	./1:57.4513:72:14:495:0:0:-9.60042,-65.8199,-772.281:0:0:36:.:.:1:.:.:.:-0.0132393
chr12	12018349	.	T	C	1889.04	REJECT	NS=2;DP=312;DPB=359.0;AC=2;AN=4;AF=0.5;RO=269;AO=90;PRO=0.0;PAO=0.0;QR=10398;QA=3484;PQR=0.0;PQA=0.0;SRF=133;SRR=136;SAF=39;SAR=51;SRP=3.08295;SAP=6.48466;AB=0.250696;ABP=196.816;RUN=1;RPP=3.10681;RPPR=5.34322;RPL=44.0;RPR=46.0;EPP=4.55446;EPPR=4.82659;DPRA=0.0;ODDS=139.653;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981413;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.321;Dels=0.0;FS=2.8735;HaplotypeScore=8.7565;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.143;QD=11.34;ReadPosRankSum=0.246;SOR=1.064;ClippingRankSum=-1.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:37:1454:52:1999:-155.824,0.0,-106.765:51:58:87:35,50:1704,0,1241:1:.:1:.:.:.:-0.00757061	0/1:129.501:268:232:8944:38:1485:-60.4446,0.0,-731.357:38:14:268:228,38:877,0,9029:.:1:1:.:.:.:-0.0132393
chr12	12019081	.	G	A	2219.665	REJECT	NS=2;DP=457;DPB=518.0;AC=2;AN=4;AF=0.5;RO=401;AO=117;PRO=0.0;PAO=0.0;QR=15019;QA=4400;PQR=0.0;PQA=0.0;SRF=184;SRR=217;SAF=43;SAR=74;SRP=8.90739;SAP=20.8461;AB=0.225869;ABP=341.123;RUN=1;RPP=4.51363;RPPR=5.87491;RPL=63.0;RPR=54.0;EPP=3.91972;EPPR=3.66553;DPRA=0.0;ODDS=190.823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0249;PAIRED=0.982906;PAIREDR=0.992519;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.95;Dels=0.0;FS=5.943;HaplotypeScore=7.7458;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=0.0615;QD=9.77;ReadPosRankSum=0.454;SOR=1.1905;ClippingRankSum=0.406	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:59:2185:61:2256:-170.567,0.0,-164.144:59:50:118:58,58:1988,0,1796:1:.:1:.:.:.:-0.00757061	0/1:129.501:397:342:12834:56:2144:-85.1185,0.0,-1046.54:55:14:397:341,55:1187,0,13058:.:1:1:.:.:.:-0.0132393
chr12	12020114	.	C	T	9093.735	REJECT	NS=2;DP=428;DPB=487.0;AC=3;AN=4;AF=0.75;RO=150;AO=337;PRO=0.0;PAO=0.0;QR=5734;QA=12509;PQR=0.0;PQA=0.0;SRF=81;SRR=69;SAF=187;SAR=150;SRP=5.09491;SAP=11.8315;AB=0.601078;ABP=35.9336;RUN=1;RPP=18.4812;RPPR=5.09491;RPL=144.0;RPR=193.0;EPP=3.53223;EPPR=3.06821;DPRA=0.0;ODDS=69.9066;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994065;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.633;Dels=0.0;FS=2.211;HaplotypeScore=5.8433;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.2435;QD=24.9;ReadPosRankSum=0.52;SOR=0.572;ClippingRankSum=-0.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.955:115:2:16:114:4231:-379.745,-29.9603,0.0:113:98:115:1,113:4519,331,0:1:.:1:.:.:.:-0.00757061	0/1:117.955:370:148:5718:223:8278:-644.094,0.0,-413.866:222:60:370:148,222:8062,0,5317:.:1:1:.:.:.:-0.0132393
chr12	12020170	.	C	T	10559.685000000001	REJECT	NS=2;DP=458;DPB=523.0;AC=3;AN=4;AF=0.75;RO=143;AO=379;PRO=0.0;PAO=0.0;QR=5483;QA=14405;PQR=0.0;PQA=0.0;SRF=75;SRR=68;SAF=191;SAR=188;SRP=3.75437;SAP=3.06187;AB=0.633588;ABP=63.9276;RUN=1;RPP=16.7668;RPPR=8.49213;RPL=214.0;RPR=165.0;EPP=12.6416;EPPR=4.8477;DPRA=0.0;ODDS=82.0541;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989446;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.738;Dels=0.0;FS=0.6205;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.081;QD=27.36;ReadPosRankSum=0.636;SOR=0.7095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.8635:128:0:0:130:4939:-444.457,-35.2097,0.0:128:100:128:0,126:5141,378,0:1:.:1:.:.:.:-0.00757061	0/1:118.8635:393:143:5483:249:9466:-745.188,0.0,-387.032:249:64:392:143,249:9335,0,4992:.:1:1:.:.:.:-0.0132393
chr12	12021372	.	C	T	111.77	PASS	SOMATIC;DP=136;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-4.176;Dels=0.04;FS=36.516;HaplotypeScore=72.5575;MLEAC=1;MLEAF=0.5;MQ=58.0;MQRankSum=-2.195;QD=0.82;ReadPosRankSum=1.303;SOR=5.861	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00757061	0/1:105,24:131:99.0:140,0,3144:24:19:129:.:1:.:.:.:.:-0.0132393
chr12	12021657	.	T	C	5331.0	REJECT	NS=2;DP=336;DPB=384.0;AC=2;AN=4;AF=0.5;RO=181;AO=203;PRO=0.0;PAO=0.0;QR=6840;QA=7386;PQR=0.0;PQA=0.0;SRF=113;SRR=68;SAF=127;SAR=76;SRP=27.3044;SAP=30.833;AB=0.528646;ABP=5.74726;RUN=1;RPP=3.53445;RPPR=19.4343;RPL=98.0;RPR=105.0;EPP=12.0064;EPPR=10.5085;DPRA=0.0;ODDS=248.093;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990148;PAIREDR=0.994475;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7145;Dels=0.0;FS=1.9365;HaplotypeScore=8.7294;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.28;QD=18.275;ReadPosRankSum=1.353;SOR=0.777;ClippingRankSum=-0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:40:1484:53:1881:-144.147,0.0,-108.436:51:57:90:38,50:1669,0,1223:1:.:1:.:.:.:-0.00757061	0/1:129.501:289:141:5356:150:5505:-416.383,0.0,-403.038:149:51:289:140,148:5183,0,5085:.:1:1:.:.:.:-0.0132393
chr12	12022013	.	A	T	358.687	REJECT	NS=2;DP=102;DPB=114.0;AC=2;AN=4;AF=0.5;RO=92;AO=22;PRO=0.0;PAO=0.0;QR=3468;QA=824;PQR=0.0;PQA=0.0;SRF=31;SRR=61;SAF=9;SAR=13;SRP=24.253;SAP=4.58955;AB=0.192982;ABP=96.3455;RUN=1;RPP=3.40511;RPPR=3.10471;RPL=10.0;RPR=12.0;EPP=28.2783;EPPR=40.775;DPRA=0.0;ODDS=20.5724;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.2727;MQMR=60.0;PAIRED=0.954545;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.535;Dels=0.01;FS=2.6665;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-0.3105;QD=8.63;ReadPosRankSum=0.3315;SOR=0.8665;ClippingRankSum=0.29	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:24:13:484:12:441:-32.9738,0.0,-36.9285:11:47:24:13,11:405,0,454:1:.:1:.:.:.:-0.00757061	0/1:94.1723:89:79:2984:10:383:-10.3689,0.0,-244.516:10:11:89:79,10:169,0,3058:.:1:1:.:.:.:-0.0132393
chr12	12022098	.	A	T	1330.79	REJECT	NS=2;DP=113;DPB=131.0;AC=2;AN=4;AF=0.5;RO=76;AO=54;PRO=0.0;PAO=0.0;QR=2756;QA=1980;PQR=0.0;PQA=0.0;SRF=63;SRR=13;SAF=43;SAR=11;SRP=74.4403;SAP=44.1879;AB=0.412214;ABP=11.7791;RUN=1;RPP=3.0103;RPPR=3.46745;RPL=27.0;RPR=27.0;EPP=3.17115;EPPR=3.12459;DPRA=0.0;ODDS=73.3339;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=56.5741;MQMR=55.3684;PAIRED=1.0;PAIREDR=0.973684;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.229;Dels=0.0;FS=1.013;HaplotypeScore=1.9565;MLEAC=1;MLEAF=0.5;MQ=56.1;MQRankSum=2.241;QD=12.925;ReadPosRankSum=-0.1605;SOR=0.427;ClippingRankSum=1.028	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.3685:35:21:805:14:484:-34.0683,0.0,-62.7274:13:39:34:21,13:419,0,803:1:.:1:.:.:.:-0.00757061	0/1:120.3685:95:55:1951:40:1496:-108.535,0.0,-149.136:40:42:95:55,40:1392,0,1880:.:1:1:.:.:.:-0.0132393
chr12	12022175	.	G	GA	1368.07	REJECT	NS=2;DP=171;DPB=220.9;AC=2;AN=3;AF=0.5;RO=47;AO=46;PRO=31.0;PAO=33.0;QR=1702;QA=1532;PQR=999.75;PQA=1046.75;SRF=33;SRR=14;SAF=33;SAR=13;SRP=19.6891;SAP=21.8927;AB=0.269006;ABP=82.2627;RUN=1;RPP=30.2009;RPPR=8.60069;RPL=11.0;RPR=35.0;EPP=3.19912;EPPR=4.16534;DPRA=0.0;ODDS=7.54364;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.178;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.54;MQRankSum=-0.715;QD=4.1;RPA=14,15;RU=A;ReadPosRankSum=-0.601;SOR=0.642;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.7639:46:7:240:10:313:-58.4797,-35.1612,-54.716:10:24:42:.:.:.:.:1:.:.:.:-0.00757061	0/1:117.795:137:40:1462:36:1219:-95.2953,0.0,-110.608:42:37:113:75,48:652,0,987:.:1:1:.:.:.:-0.0132393
chr12	12022175	.	GA	G	1368.07	REJECT	NS=2;DP=171;DPB=220.9;AC=2;AN=2;AF=0.25;RO=47;AO=41;PRO=31.0;PAO=26.5;QR=1702;QA=1410;PQR=999.75;PQA=849.75;SRF=33;SRR=14;SAF=35;SAR=6;SRP=19.6891;SAP=47.552;AB=0.239766;ABP=103.596;RUN=1;RPP=31.0276;RPPR=8.60069;RPL=9.0;RPR=32.0;EPP=22.1298;EPPR=4.16534;DPRA=0.0;ODDS=7.54364;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=59.3659;MQMR=60.0;PAIRED=0.97561;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=2.948;FS=13.295;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=-0.405;QD=10.15;ReadPosRankSum=0.751;SOR=4.073;ClippingRankSum=-0.694	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:65.88195:45:7:240:19:673:-58.4797,-3.23999,-29.8162:23:52:43:18,27:452,0,174:1:.:1:.:.:.:-0.00757061	./1:136.59:125:40:1462:22:737:-95.2953,-47.2373,-209.37:22:21:103:.:.:.:.:1:.:.:.:-0.0132393
chr12	12022175	.	GAA	G	1368.07	REJECT	SOMATIC;NS=2;DP=171;DPB=220.9;AC=1;AN=3;AF=0.0;RO=47;AO=11;PRO=31.0;PAO=22.5;QR=1702;QA=376;PQR=999.75;PQA=707.75;SRF=33;SRR=14;SAF=6;SAR=5;SRP=19.6891;SAP=3.20771;AB=0.0643275;ABP=284.933;RUN=1;RPP=3.20771;RPPR=8.60069;RPL=5.0;RPR=6.0;EPP=7.94546;EPPR=4.16534;DPRA=0.0;ODDS=7.54364;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:32.7639:46:7:240:6:194:-58.4797,-45.8807,-76.2377:6:14:42:.:.:.:.:.:.:-0.00757061	./1:136.59:125:40:1462:5:182:-95.2953,-100.321,-319.119:5:5:103:.:.:1:.:.:.:-0.0132393
chr12	12023023	.	C	G	7781.3	REJECT	NS=2;DP=321;DPB=366.0;AC=3;AN=4;AF=0.75;RO=94;AO=272;PRO=0.0;PAO=0.0;QR=3568;QA=10425;PQR=0.0;PQA=0.0;SRF=49;SRR=45;SAF=138;SAR=134;SRP=3.37991;SAP=3.13803;AB=0.65942;ABP=63.9374;RUN=1;RPP=4.57504;RPPR=3.84193;RPL=129.0;RPR=143.0;EPP=12.2391;EPPR=6.33681;DPRA=0.0;ODDS=57.1119;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996324;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.32;Dels=0.0;FS=0.0;HaplotypeScore=7.748;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.1;QD=29.69;ReadPosRankSum=-0.069;SOR=0.7065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:90:3415:-307.414,-24.3774,0.0:90:100:90:0,90:3750,269,0:1:.:1:.:.:.:-0.00757061	0/1:129.501:276:94:3568:182:7010:-555.781,0.0,-246.196:182:66:276:94,182:7028,0,3174:.:1:1:.:.:.:-0.0132393
chr12	12023773	.	C	A	10358.685000000001	REJECT	NS=2;DP=439;DPB=506.0;AC=3;AN=4;AF=0.75;RO=136;AO=370;PRO=0.0;PAO=0.0;QR=5231;QA=14192;PQR=0.0;PQA=0.0;SRF=71;SRR=65;SAF=192;SAR=178;SRP=3.5851;SAP=4.16059;AB=0.635389;ABP=62.3969;RUN=1;RPP=5.35784;RPPR=13.8038;RPL=175.0;RPR=195.0;EPP=3.85541;EPPR=3.0103;DPRA=0.0;ODDS=83.9993;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994595;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.428;Dels=0.0;FS=0.8885;HaplotypeScore=4.8657;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.118;QD=28.35;ReadPosRankSum=-1.196;SOR=0.8765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:132:0:0:133:5103:-459.249,-36.0545,0.0:132:100:132:0,132:5432,397,0:1:.:1:.:.:.:-0.00757061	0/1:129.501:373:136:5231:237:9089:-716.465,0.0,-369.448:237:64:373:136,237:9053,0,4713:.:1:1:.:.:.:-0.0132393
chr12	12023843	.	C	A	2590.535	REJECT	NS=2;DP=442;DPB=507.0;AC=2;AN=4;AF=0.5;RO=380;AO=127;PRO=0.0;PAO=0.0;QR=14523;QA=4841;PQR=0.0;PQA=0.0;SRF=191;SRR=189;SAF=64;SAR=63;SRP=3.03316;SAP=3.0274;AB=0.250493;ABP=277.16;RUN=1;RPP=10.5506;RPPR=3.10173;RPL=74.0;RPR=53.0;EPP=3.16418;EPPR=3.58174;DPRA=0.0;ODDS=217.366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997368;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5085;Dels=0.0;FS=4.309;HaplotypeScore=6.7709;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.137;QD=10.505;ReadPosRankSum=0.36;SOR=0.77;ClippingRankSum=-0.882	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:129:59:2178:70:2647:-203.291,0.0,-161.059:70:54:129:59,70:2292,0,1878:1:.:1:.:.:.:-0.00757061	0/1:129.501:378:321:12345:57:2194:-94.9611,0.0,-1007.91:57:15:378:321,57:1337,0,12689:.:1:1:.:.:.:-0.0132393
chr12	12023941	.	C	T	8704.36	REJECT	NS=2;DP=386;DPB=447.0;AC=3;AN=4;AF=0.75;RO=127;AO=320;PRO=0.0;PAO=0.0;QR=4883;QA=12123;PQR=0.0;PQA=0.0;SRF=57;SRR=70;SAF=147;SAR=173;SRP=5.8999;SAP=7.59754;AB=0.611621;ABP=38.398;RUN=1;RPP=4.74748;RPPR=7.95168;RPL=168.0;RPR=152.0;EPP=3.03744;EPPR=3.43776;DPRA=0.0;ODDS=75.793;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990625;PAIREDR=0.984252;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.027;Dels=0.0;FS=1.5255;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.836;QD=25.76;ReadPosRankSum=-0.337;SOR=0.8105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:120:4529:-407.576,-32.4905,0.0:119:100:119:0,118:4748,353,0:1:.:1:.:.:.:-0.00757061	0/1:129.501:326:127:4883:200:7594:-594.481,0.0,-350.646:199:61:326:127,199:7482,0,4499:.:1:1:.:.:.:-0.0132393
chr12	12024131	.	C	CT	90.916	REJECT	NS=2;DP=102;DPB=156.56;AC=2;AN=3;AF=0.25;RO=47;AO=9;PRO=39.1667;PAO=33.1667;QR=1614;QA=250;PQR=1382.83;PQA=1158.83;SRF=7;SRR=40;SAF=3;SAR=6;SRP=53.3238;SAP=5.18177;AB=0.0882353;ABP=153.225;RUN=1;RPP=9.04217;RPPR=4.16534;RPL=7.0;RPR=2.0;EPP=5.18177;EPPR=13.4056;DPRA=0.0;ODDS=2.18545;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=10.5;LEN=1;MQM=59.2222;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.60247:19:9:319:1:15:-2.23872,-0.987403,-29.8319:1:6:16:.:.:1:.:.:.:-0.00757061	0/1:42.1297:83:38:1295:8:235:-11.8323,0.0,-127.27:8:13:63:.:.:1:.:.:.:-0.0132393
chr12	12024131	.	CT	C	90.916	REJECT	NS=2;DP=102;DPB=156.56;AC=2;AN=3;AF=0.25;RO=47;AO=14;PRO=39.1667;PAO=30.6667;QR=1614;QA=273;PQR=1382.83;PQA=1038.83;SRF=7;SRR=40;SAF=5;SAR=9;SRP=53.3238;SAP=5.49198;AB=0.137255;ABP=119.589;RUN=1;RPP=5.49198;RPPR=4.16534;RPL=5.0;RPR=9.0;EPP=3.63072;EPPR=13.4056;DPRA=0.0;ODDS=2.18545;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=10.5;LEN=1;MQM=58.5714;MQMR=60.0;PAIRED=0.928571;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7.60247:19:9:319:3:65:-2.23872,0.0,-39.4293:3:19:16:.:.:1:.:.:.:-0.00757061	./1:42.1297:83:38:1295:11:208:-11.8323,-4.32853,-160.67:11:17:63:.:.:1:.:.:.:-0.0132393
chr12	12024131	.	CTT	C	90.916	REJECT	NS=2;DP=102;DPB=156.56;AC=2;AN=2;AF=0.0;RO=47;AO=9;PRO=39.1667;PAO=27.0;QR=1614;QA=154;PQR=1382.83;PQA=946.5;SRF=7;SRR=40;SAF=1;SAR=8;SRP=53.3238;SAP=14.8328;AB=0.0882353;ABP=153.225;RUN=1;RPP=5.18177;RPPR=4.16534;RPL=3.0;RPR=6.0;EPP=9.04217;EPPR=13.4056;DPRA=0.0;ODDS=2.18545;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=10.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.60247:19:9:319:3:70:-2.23872,-0.81282,-63.4633:3:19:16:.:.:1:.:.:.:-0.00757061	./1:42.1297:83:38:1295:6:84:-11.8323,-19.3658,-195.612:6:10:63:.:.:1:.:.:.:-0.0132393
chr12	12024284	.	G	A	1908.0	REJECT	NS=2;DP=90;DPB=109.0;AC=3;AN=4;AF=0.75;RO=26;AO=83;PRO=0.0;PAO=0.0;QR=917;QA=2915;PQR=0.0;PQA=0.0;SRF=13;SRR=13;SAF=35;SAR=48;SRP=3.0103;SAP=7.43173;AB=0.633803;ABP=14.0512;RUN=1;RPP=3.24576;RPPR=4.34659;RPL=43.0;RPR=40.0;EPP=46.9892;EPPR=19.3799;DPRA=0.0;ODDS=24.7173;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.5422;MQMR=60.0;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.09;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.75;MQ=59.705;MQRankSum=0.555;QD=25.795;ReadPosRankSum=-0.376;SOR=1.079	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:103.1715:38:0:0:38:1345:-121.303,-10.3086,0.0:38:100:38:0,38:1510,114,0:1:.:1:.:.:.:-0.00757061	0/1:129.501:71:26:917:45:1570:-122.171,0.0,-63.3814:45:63:71:26,45:1506,0,805:.:1:1:.:.:.:-0.0132393
chr12	12025110	.	A	G	5968.700000000001	REJECT	NS=2;DP=341;DPB=389.0;AC=2;AN=4;AF=0.5;RO=178;AO=211;PRO=0.0;PAO=0.0;QR=6914;QA=8056;PQR=0.0;PQA=0.0;SRF=99;SRR=79;SAF=105;SAR=106;SRP=7.89001;SAP=3.02059;AB=0.542416;ABP=9.08931;RUN=1;RPP=5.9845;RPPR=3.0591;RPL=114.0;RPR=97.0;EPP=17.0991;EPPR=31.1174;DPRA=0.0;ODDS=276.455;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995261;PAIREDR=0.988764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.467;Dels=0.0;FS=3.307;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.767;QD=19.515;ReadPosRankSum=-0.113;SOR=0.5385;ClippingRankSum=0.414	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:43:1631:52:1988:-153.2,0.0,-121.088:52:55:94:41,52:1829,0,1429:1:.:1:.:.:.:-0.00757061	0/1:129.501:293:135:5283:159:6068:-466.152,0.0,-395.555:158:54:293:135,158:5850,0,5054:.:1:1:.:.:.:-0.0132393
chr12	12025363	.	A	C	3266.86	PASS	SOMATIC;NS=2;DP=384;DPB=384.0;AC=1;AN=3;AF=0.25;RO=261;AO=122;PRO=0.0;PAO=0.0;QR=9323;QA=4629;PQR=0.0;PQA=0.0;SRF=76;SRR=185;SAF=41;SAR=81;SRP=101.858;SAP=31.4886;AB=0.398693;ABP=30.2885;RUN=1;RPP=5.57335;RPPR=13.2021;RPL=67.0;RPR=55.0;EPP=3.0815;EPPR=18.3936;DPRA=3.92308;ODDS=49.5796;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1639;MQMR=59.9234;PAIRED=1.0;PAIREDR=0.97318;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.117;Dels=0.0;FS=4.451;HaplotypeScore=18.2599;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=0.18;QD=14.13;ReadPosRankSum=-0.808;SOR=0.467	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.709:75:78:2856:0:0:0.0,-21.1062,-257.138:0:0:75:73,0:.:0.0:0:.:.:.:0:.:.:0:-0.00757061	0/1:118.8545:304:183:6467:122:4629:-335.126,0.0,-499.119:122:40:303:173,115:38.0:0.394:2:4323,0,5950:.:1:1:.:.:1:-0.0132393
chr12	12025428	.	C	T	222.003	REJECT	NS=2;DP=44;DPB=97.9643;AC=2;AN=2;AF=0.0;RO=6;AO=4;PRO=36.3333;PAO=5.58333;QR=215;QA=69;PQR=1313.95;PQA=192.5;SRF=2;SRR=4;SAF=0;SAR=4;SRP=4.45795;SAP=11.6962;AB=0.0571429;ABP=62.6327;RUN=1;RPP=5.18177;RPPR=8.80089;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=8.80089;DPRA=0.0;ODDS=3.94373;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=5;MEANALT=6.0;LEN=1;MQM=55.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7167:9:2:73:2:41:0.0,-21.2878,-288.37:2:33:6:.:.:1:.:.:.:-0.00757061	./1:68.8859:35:4:142:2:28:-28.3279,-103.867,-954.082:2:6:34:.:.:1:.:.:.:-0.0132393
chr12	12025428	.	C	CT	222.003	REJECT	NS=2;DP=44;DPB=97.9643;AC=2;AN=2;AF=0.0;RO=6;AO=3;PRO=36.3333;PAO=35.3333;QR=215;QA=46;PQR=1313.95;PQA=1262.95;SRF=2;SRR=4;SAF=0;SAR=3;SRP=4.45795;SAP=9.52472;AB=0.0571429;ABP=62.6327;RUN=1;RPP=3.73412;RPPR=8.80089;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=8.80089;DPRA=0.0;ODDS=3.94373;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=5;MEANALT=6.0;LEN=1;MQM=35.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7167:9:2:73:1:4:0.0,-1.18155,-13.3885:1:17:6:.:.:1:.:.:.:-0.00757061	./1:68.8859:35:4:142:2:42:-28.3279,-19.0673,-34.9491:2:6:34:.:.:1:.:.:.:-0.0132393
chr12	12025428	.	C	CTTT	60.73	PASS	DP=20;AC=1;AN=4;AF=0.5;BaseQRankSum=0.72;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=58.12;MQRankSum=-0.72;QD=3.04;ReadPosRankSum=-1.38;SOR=1.414;ClippingRankSum=-0.72	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2,4:6:62.0:98,0,62:4:67:6:1:.:.:.:.:.:-0.00757061	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12025428	.	CT	C	222.003	REJECT	NS=2;DP=44;DPB=97.9643;AC=2;AN=2;AF=0.0;RO=6;AO=5;PRO=36.3333;PAO=25.8333;QR=215;QA=100;PQR=1313.95;PQA=910.117;SRF=2;SRR=4;SAF=0;SAR=5;SRP=4.45795;SAP=13.8677;AB=0.114286;ABP=48.239;RUN=1;RPP=13.8677;RPPR=8.80089;RPL=5.0;RPR=0.0;EPP=13.8677;EPPR=8.80089;DPRA=0.0;ODDS=3.94373;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=5;MEANALT=6.0;LEN=1;MQM=52.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7167:9:2:73:1:34:0.0,-2.09126,-54.0958:1:17:6:.:.:1:.:.:.:-0.00757061	./1:68.8859:35:4:142:4:66:-28.3279,-29.0817,-109.59:4:12:34:.:.:1:.:.:.:-0.0132393
chr12	12025428	.	CTTTTTTTTTTT	C	222.003	PASS	SOMATIC;NS=2;DP=44;DPB=97.9643;AC=2;AN=3;AF=0.25;RO=6;AO=20;PRO=36.3333;PAO=16.5833;QR=215;QA=631;PQR=1313.95;PQA=571.617;SRF=2;SRR=4;SAF=4;SAR=16;SRP=4.45795;SAP=18.6449;AB=0.571429;ABP=4.56135;RUN=1;RPP=3.44459;RPPR=8.80089;RPL=9.0;RPR=11.0;EPP=6.91895;EPPR=8.80089;DPRA=3.88889;ODDS=3.94373;GTI=0;TYPE=del;CIGAR=1M11D16M;NUMALT=5;MEANALT=6.0;LEN=11;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.633;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=1.806;QD=6.17;RPA=21,10;RU=T;ReadPosRankSum=1.153;SOR=0.856;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7167:9:2:73:0:0:0.0,-14.66,-171.218:0:0:6:.:.:.:.:1:.:.:.:-0.00757061	0/1:83.94295:75:4:142:20:631:-28.3279,0.0,-286.372:22:46:52:46,24:2661,0,4320:.:1:1:.:.:.:-0.0132393
chr12	12025428	.	CTTTTTTTTTTTT	C	222.003	REJECT	NS=2;DP=44;DPB=97.9643;AC=2;AN=2;AF=0.0;RO=6;AO=2;PRO=36.3333;PAO=10.3333;QR=215;QA=74;PQR=1313.95;PQA=365.867;SRF=2;SRR=4;SAF=1;SAR=1;SRP=4.45795;SAP=3.0103;AB=0.0571429;ABP=62.6327;RUN=1;RPP=7.35324;RPPR=8.80089;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=8.80089;DPRA=3.88889;ODDS=3.94373;GTI=0;TYPE=del;CIGAR=1M12D15M;NUMALT=5;MEANALT=6.0;LEN=12;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.7167:9:2:73:0:0:0.0,-15.7462,-184.564:0:0:6:.:.:1:.:.:.:-0.00757061	./1:68.8859:35:4:142:2:74:-28.3279,-66.3895,-554.613:2:6:34:.:.:1:.:.:.:-0.0132393
chr12	12026871	.	A	G	2069.5	REJECT	NS=2;DP=282;DPB=340.0;AC=2;AN=4;AF=0.5;RO=246;AO=93;PRO=0.0;PAO=0.0;QR=9386;QA=3575;PQR=0.0;PQA=0.0;SRF=106;SRR=140;SAF=43;SAR=50;SRP=13.2145;SAP=4.15441;AB=0.273529;ABP=154.477;RUN=1;RPP=6.95631;RPPR=3.57524;RPL=53.0;RPR=40.0;EPP=3.03365;EPPR=17.1337;DPRA=0.0;ODDS=117.619;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.223;Dels=0.0;FS=4.684;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.217;QD=10.195;ReadPosRankSum=1.67;SOR=0.761;ClippingRankSum=-1.308	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:55:2108:60:2330:-178.527,0.0,-158.556:59:52:112:52,58:1929,0,1841:1:.:1:.:.:.:-0.00757061	0/1:129.501:224:191:7278:33:1245:-51.3545,0.0,-594.053:33:15:224:191,33:725,0,7430:.:1:1:.:.:.:-0.0132393
chr12	12027101	.	G	C	2193.87	REJECT	NS=2;DP=98;DPB=116.0;AC=2;AN=4;AF=0.5;RO=34;AO=81;PRO=0.0;PAO=0.0;QR=1277;QA=3085;PQR=0.0;PQA=0.0;SRF=0;SRR=34;SAF=1;SAR=80;SRP=76.8404;SAP=170.321;AB=0.698276;ABP=42.621;RUN=1;RPP=5.18177;RPPR=12.2071;RPL=45.0;RPR=36.0;EPP=4.32391;EPPR=12.2071;DPRA=0.0;ODDS=72.2975;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.4691;MQMR=60.0;PAIRED=0.975309;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.439;Dels=0.0;FS=0.0;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.536;QD=24.54;ReadPosRankSum=0.6985;SOR=1.415;ClippingRankSum=-0.095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:36:17:612:19:710:-54.2339,0.0,-45.436:19:53:36:17,19:713,0,568:1:.:1:.:.:.:-0.00757061	0/1:129.501:80:17:665:62:2375:-192.381,0.0,-38.449:62:78:79:17,62:2433,0,508:.:1:1:.:.:.:-0.0132393
chr12	12027136	.	C	T	1674.02	REJECT	NS=2;DP=71;DPB=87.0;AC=2;AN=4;AF=0.5;RO=24;AO=63;PRO=0.0;PAO=0.0;QR=886;QA=2426;PQR=0.0;PQA=0.0;SRF=0;SRR=24;SAF=0;SAR=63;SRP=55.1256;SAP=139.813;AB=0.724138;ABP=40.9736;RUN=1;RPP=24.5527;RPPR=16.0391;RPL=44.0;RPR=19.0;EPP=24.5527;EPPR=16.0391;DPRA=0.0;ODDS=25.3134;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.3175;MQMR=60.0;PAIRED=0.984127;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.479;Dels=0.0;FS=0.0;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=0.73;QD=25.625;ReadPosRankSum=0.9265;SOR=1.968;ClippingRankSum=0.336	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:31:15:537:16:622:-47.7107,0.0,-40.0327:16:52:31:15,16:603,0,484:1:.:1:.:.:.:-3.97948	0/1:104.464:56:9:349:47:1804:-147.312,0.0,-16.2443:47:84:56:9,47:1860,0,223:.:1:1:.:.:.:-0.0132393
chr12	12027175	.	G	T	1661.15	REJECT	NS=2;DP=63;DPB=72.0;AC=3;AN=4;AF=0.625;RO=12;AO=60;PRO=0.0;PAO=0.0;QR=465;QA=2284;PQR=0.0;PQA=0.0;SRF=0;SRR=12;SAF=1;SAR=59;SRP=29.068;SAP=124.758;AB=0.529412;ABP=3.13803;RUN=1;RPP=12.2752;RPPR=3.73412;RPL=22.0;RPR=38.0;EPP=10.1038;EPPR=3.73412;DPRA=0.0;ODDS=6.84252;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.0167;MQMR=60.0;PAIRED=0.583333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1125;Dels=0.0;FS=0.0;HaplotypeScore=2.9633;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-1.39;QD=24.53;ReadPosRankSum=-0.53;SOR=2.05;ClippingRankSum=-0.625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:17:8:311:9:353:-27.311,0.0,-23.5115:9:53:17:8,9:344,0,298:1:.:1:.:.:.:-3.97948	1/1:20.36065:55:4:154:51:1931:-159.061,-1.0406,0.0:51:93:55:4,51:1982,0,11:.:1:1:.:.:.:-0.0132393
chr12	12027310	.	CA	C	228.73	PASS	SOMATIC;DP=24;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.95;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=-0.05;QD=9.53;RPA=14,13;RU=A;ReadPosRankSum=-1.25;SOR=0.352;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.97948	0/1:4,15:22:41.0:266,0,41:15:79:19:.:1:.:.:.:.:-0.0132393
chr12	12027342	.	A	G	69.7845	REJECT	NS=2;DP=30;DPB=30.0;AC=2;AN=4;AF=0.5;RO=21;AO=9;PRO=0.0;PAO=0.0;QR=791;QA=219;PQR=0.0;PQA=0.0;SRF=1;SRR=20;SAF=6;SAR=3;SRP=40.3389;SAP=5.18177;AB=0.3;ABP=13.4334;RUN=1;RPP=3.25157;RPPR=8.07707;RPL=5.0;RPR=4.0;EPP=9.04217;EPPR=11.386;DPRA=0.0;ODDS=1.19624;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.2222;MQMR=58.1429;PAIRED=1.0;PAIREDR=0.380952;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:69.7604:9:4:153:5:145:-10.7347,0.0,-11.4804:5:56:9:.:.:1:.:.:.:-3.97948	0/1:6.34242:21:17:638:4:74:-0.976898,0.0,-51.9187:4:19:21:.:.:1:.:.:.:-0.0132393
chr12	12027372	.	GTA	G	272.672	REJECT	NS=2;DP=14;DPB=15.7692;AC=2;AN=4;AF=0.5;RO=2;AO=12;PRO=4.0;PAO=4.0;QR=77;QA=394;PQR=126.0;PQA=126.0;SRF=0;SRR=2;SAF=6;SAR=6;SRP=7.35324;SAP=3.0103;AB=0.857143;ABP=18.5208;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=7.0;RPR=5.0;EPP=9.52472;EPPR=3.0103;DPRA=0.0;ODDS=0.0766886;GTI=1;TYPE=del;CIGAR=1M2D10M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=54.8333;MQMR=60.0;PAIRED=0.583333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.474;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=56.12;MQRankSum=-0.791;QD=27.43;RPA=5,4;RU=TA;ReadPosRankSum=-0.791;SOR=0.399;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2.83713:3:1:39:2:65:-5.12782,0.0,-2.74485:2:67:3:.:.:.:.:1:.:.:.:-3.97948	0/1:6.005321:12:1:38:10:329:-26.4772,0.0,-0.452618:10:91:11:1,10:421,0,12:.:1:1:.:.:.:-0.0132393
chr12	12027405	.	C	T	385.77	PASS	SOMATIC;DP=12;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=50.33;QD=32.15;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.97948	1/1:0,12:12:30.0:414,30,0:12:100:12:.:1:.:.:.:.:-0.0132393
chr12	12027405	.	CAC	TAT	316.161	REJECT	NS=2;DP=12;DPB=13.0;AC=3;AN=4;AF=0.75;RO=1;AO=11;PRO=0.0;PAO=2.0;QR=39;QA=400;PQR=0.0;PQA=74.0;SRF=0;SRR=1;SAF=6;SAR=5;SRP=5.18177;SAP=3.20771;AB=0.5;ABP=3.0103;RUN=1;RPP=26.8965;RPPR=5.18177;RPL=11.0;RPR=0.0;EPP=3.20771;EPPR=5.18177;DPRA=0.0;ODDS=0.81053;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=1;MEANALT=1.0;LEN=3;MQM=46.8182;MQMR=60.0;PAIRED=0.636364;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:5.08662:2:1:39:1:30:-2.27768,0.0,-3.13016:1:50:2:.:.:1:.:.:.:-3.97948	1/1:38.5089:10:0:0:10:370:-35.657,-3.2637,0.0:10:100:10:.:.:1:.:.:.:-0.0132393
chr12	12027407	.	C	T	335.78	PASS	SOMATIC;DP=10;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=48.16;QD=33.58;SOR=0.693	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.97948	1/1:0,10:10:27.0:364,27,0:10:100:10:.:1:.:.:.:.:-0.0132393
chr12	12027499	.	C	T	11.83	LowQual	SOMATIC;DP=1;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=11.83;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.97948	1/1:0,1:1:3.0:38,3,0:1:100:1:.:1:.:.:.:.:-0.0132393
chr12	12027504	.	G	A	17.61	LowQual	SOMATIC;DP=1;AC=2;AN=4;AF=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=17.61;SOR=1.609	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-3.97948	1/1:0,1:1:3.0:44,3,0:1:100:1:.:1:.:.:.:.:-0.0132393
chr12	12027538	.	ATG	A	96.384	REJECT	NS=2;DP=3;DPB=1.5;AC=4;AN=4;AF=1.0;RO=0;AO=3;PRO=0.0;PAO=0.0;QR=0;QA=113;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=2;SAR=1;SRP=0.0;SAP=3.73412;AB=0.0;ABP=0.0;RUN=1;RPP=3.73412;RPPR=0.0;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=0.0;DPRA=0.0;ODDS=5.01051;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=56.6667;MQMR=0.0;PAIRED=0.666667;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:24.5123:2:0:0:2:74:-7.0154,-0.571747,0.0:2:100:2:.:.:1:.:.:.:-3.97948	1/1:21.8041:1:0:0:1:39:-3.89648,-0.300975,0.0:1:100:1:.:.:1:.:.:.:-0.0132393
chr12	12027555	.	CAT	C	160.187	REJECT	NS=2;DP=5;DPB=2.5;AC=4;AN=4;AF=1.0;RO=0;AO=5;PRO=0.0;PAO=0.0;QR=0;QA=189;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=3;SAR=2;SRP=0.0;SAP=3.44459;AB=0.0;ABP=0.0;RUN=1;RPP=3.44459;RPPR=0.0;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=0.0;DPRA=0.0;ODDS=5.63406;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=52.8;MQMR=0.0;PAIRED=0.8;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:24.4922:2:0:0:2:75:-7.10782,-0.571781,0.0:2:100:2:.:.:1:.:.:.:-3.97948	1/1:27.2007:3:0:0:3:114:-10.424,-0.842635,0.0:3:100:3:.:.:1:.:.:.:-0.0132393
chr12	12027564	.	ATG	A	182.885	REJECT	NS=2;DP=6;DPB=5.07692;AC=4;AN=4;AF=1.0;RO=0;AO=6;PRO=0.0;PAO=0.0;QR=0;QA=216;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=4;SAR=2;SRP=0.0;SAP=4.45795;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=6.25722;GTI=0;TYPE=del;CIGAR=1M2D10M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=52.8333;MQMR=0.0;PAIRED=0.833333;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:27.1914:3:0:0:3:107:-9.96903,-0.842413,0.0:3:100:3:.:.:1:.:.:.:-3.97948	1/1:27.1914:3:0:0:3:109:-9.95822,-0.842415,0.0:3:100:3:.:.:1:.:.:.:-0.0132393
chr12	12027586	.	A	G	194.187	REJECT	NS=2;DP=6;DPB=6.0;AC=4;AN=4;AF=1.0;RO=0;AO=6;PRO=0.0;PAO=0.0;QR=0;QA=231;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=4;SAR=2;SRP=0.0;SAP=4.45795;AB=0.0;ABP=0.0;RUN=1;RPP=4.45795;RPPR=0.0;RPL=2.0;RPR=4.0;EPP=4.45795;EPPR=0.0;DPRA=0.0;ODDS=6.25782;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=52.8333;MQMR=0.0;PAIRED=0.833333;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=52.01;QD=34.43;SOR=1.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:27.194:3:0:0:3:114:-10.6049,-0.842674,0.0:3:100:3:.:.:.:.:1:.:.:.:-3.97948	1/1:18.09705:3:0:0:3:117:-10.7024,-0.842686,0.0:3:100:3:0,3:131,9,0:.:1:1:.:.:.:-0.0132393
chr12	12027596	.	A	G	126.034	REJECT	NS=2;DP=12;DPB=12.0;AC=2;AN=4;AF=0.5;RO=5;AO=7;PRO=0.0;PAO=0.0;QR=191;QA=275;PQR=0.0;PQA=0.0;SRF=4;SRR=1;SAF=7;SAR=0;SRP=6.91895;SAP=18.2106;AB=0.583333;ABP=3.73412;RUN=1;RPP=18.2106;RPPR=6.91895;RPL=0.0;RPR=7.0;EPP=18.2106;EPPR=3.44459;DPRA=0.0;ODDS=2.94879;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=53.1429;MQMR=53.4;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.573;Dels=0.0;FS=4.771;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=54.65;MQRankSum=0.573;QD=23.09;ReadPosRankSum=-0.573;SOR=3.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:13.0267:3:2:73:1:40:-2.6097,0.0,-5.96221:1:33:3:.:.:.:.:1:.:.:.:-3.97948	0/1:86.07835:9:3:118:6:235:-18.5941,0.0,-8.03305:6:67:9:3,6:236,0,105:.:1:1:.:.:.:-0.0132393
chr12	12027600	.	ATATATGTGTGTATATATG	A	398.789	REJECT	NS=2;DP=13;DPB=13.8;AC=2;AN=2;AF=0.5;RO=0;AO=4;PRO=0.5;PAO=0.0;QR=0;QA=121;PQR=19.0;PQA=0.0;SRF=0;SRR=0;SAF=3;SAR=1;SRP=0.0;SAP=5.18177;AB=0.307692;ABP=7.18621;RUN=1;RPP=3.0103;RPPR=0.0;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=4.2566;GTI=0;TYPE=del;CIGAR=1M18D1M;NUMALT=2;MEANALT=2.5;LEN=18;MQM=51.75;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.555:3:0:0:2:52:-13.6472,-9.41878,-8.87515:2:67:3:.:.:1:.:.:.:-3.97948	./1:16.7683:10:0:0:2:69:-37.3766,-32.2629,-38.0638:2:22:9:.:.:1:.:.:.:-0.0132393
chr12	12027618	.	G	GTA	398.789	REJECT	NS=2;DP=13;DPB=13.8;AC=2;AN=2;AF=0.5;RO=0;AO=8;PRO=0.5;PAO=5.5;QR=0;QA=312;PQR=19.0;PQA=211.0;SRF=0;SRR=0;SAF=8;SAR=0;SRP=0.0;SAP=20.3821;AB=0.615385;ABP=4.51363;RUN=1;RPP=20.3821;RPPR=0.0;RPL=0.0;RPR=8.0;EPP=20.3821;EPPR=0.0;DPRA=0.0;ODDS=4.2566;GTI=0;TYPE=ins;CIGAR=19M2I1M;NUMALT=2;MEANALT=2.5;LEN=2;MQM=54.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=58.23;QD=29.27;RPA=2,3;RU=TA;SOR=3.912;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.555:3:0:0:1:39:-13.6472,-4.22842,-3.39782:1:33:3:.:.:.:.:1:.:.:.:-3.97948	./1:29.38415:11:0:0:7:273:-37.3766,-5.11372,-2.38191:10:89:11:0,14:635,42,0:.:1:1:.:.:.:-0.0132393
chr12	12027885	.	C	T	477.8795	REJECT	NS=2;DP=131;DPB=149.0;AC=2;AN=4;AF=0.5;RO=116;AO=33;PRO=0.0;PAO=0.0;QR=4306;QA=1231;PQR=0.0;PQA=0.0;SRF=104;SRR=12;SAF=31;SAR=2;SRP=161.453;SAP=58.3499;AB=0.221477;ABP=103.408;RUN=1;RPP=4.65535;RPPR=22.1792;RPL=14.0;RPR=19.0;EPP=4.65535;EPPR=22.1792;DPRA=0.0;ODDS=55.0039;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=42.0909;MQMR=44.4483;PAIRED=1.0;PAIREDR=0.991379;technology.ILLUMINA=1.0;MQ0=1;BaseQRankSum=-0.2665;Dels=0.0;FS=1.0035;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.5;MQ=44.75;MQRankSum=-0.687;QD=7.945;ReadPosRankSum=-0.289;SOR=1.0275;ClippingRankSum=-0.495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4005:36:23:865:14:534:-35.7042,0.0,-64.539:13:37:36:22,13:454,0,823:1:.:1:.:.:.:-0.000759707	0/1:120.4005:112:93:3441:19:697:-28.8487,0.0,-263.529:19:17:112:94,19:450,0,3480:.:1:1:.:.:.:-0.0132393
chr12	12027980	.	TA	T	2895.135	REJECT	NS=2;DP=231;DPB=297.25;AC=2;AN=4;AF=0.5;RO=118;AO=127;PRO=53.0;PAO=45.0;QR=4440;QA=4690;PQR=1937.5;PQA=1651.5;SRF=92;SRR=26;SAF=90;SAR=37;SRP=83.1708;SAP=51.0392;AB=0.496094;ABP=3.04423;RUN=1;RPP=13.6967;RPPR=19.5724;RPL=51.0;RPR=76.0;EPP=5.8999;EPPR=4.85053;DPRA=0.0;ODDS=212.783;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=5.5;LEN=1;MQM=58.4094;MQMR=59.6102;PAIRED=0.976378;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.588;FS=5.385;MLEAC=1;MLEAF=0.5;MQ=57.155;MQRankSum=-0.379;QD=10.385;RPA=10,9;RU=A;ReadPosRankSum=0.4605;SOR=0.3495;STR;ClippingRankSum=-1.397	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:31:1173:36:1275:-98.1617,0.0,-95.2371:36:52:69:35,37:826,0,764:1:.:1:.:.:.:-0.000759707	0/1:129.501:195:87:3267:91:3415:-262.011,0.0,-265.316:93:51:184:94,96:2346,0,2150:.:1:1:.:.:.:-0.0132393
chr12	12028142	.	A	C	2020.605	REJECT	NS=2;DP=413;DPB=476.0;AC=2;AN=4;AF=0.5;RO=373;AO=103;PRO=0.0;PAO=0.0;QR=14300;QA=3866;PQR=0.0;PQA=0.0;SRF=197;SRR=176;SAF=53;SAR=50;SRP=5.57764;SAP=3.20004;AB=0.216387;ABP=335.574;RUN=1;RPP=3.53736;RPPR=5.57764;RPL=54.0;RPR=49.0;EPP=7.75381;EPPR=19.3633;DPRA=0.0;ODDS=143.396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986595;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0175;Dels=0.0;FS=0.6285;HaplotypeScore=3.9298;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8185;QD=9.12;ReadPosRankSum=0.271;SOR=0.6825;ClippingRankSum=1.221	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.238:123:68:2544:58:2113:-156.046,0.0,-194.846:58:47:123:62,58:1942,0,2081:1:.:1:.:.:.:-0.000759707	0/1:117.238:350:305:11756:45:1753:-62.8583,0.0,-962.548:45:13:350:305,45:920,0,12122:.:1:1:.:.:.:-0.0132393
chr12	12028157	.	G	T	6057.42	REJECT	NS=2;DP=411;DPB=473.0;AC=2;AN=4;AF=0.5;RO=247;AO=226;PRO=0.0;PAO=0.0;QR=9343;QA=8519;PQR=0.0;PQA=0.0;SRF=136;SRR=111;SAF=114;SAR=112;SRP=8.50492;SAP=3.04873;AB=0.477801;ABP=5.03487;RUN=1;RPP=4.89352;RPPR=6.18399;RPL=120.0;RPR=106.0;EPP=7.66071;EPPR=4.49604;DPRA=0.0;ODDS=364.944;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977876;PAIREDR=0.995951;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.339;Dels=0.0;FS=2.73;HaplotypeScore=5.8125;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.358;QD=16.88;ReadPosRankSum=1.201;SOR=0.5705;ClippingRankSum=-0.246	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:119:58:2139:65:2417:-184.226,0.0,-159.186:61:51:119:58,58:2074,0,2005:1:.:1:.:.:.:-0.000759707	0/1:129.501:350:189:7204:161:6102:-454.064,0.0,-553.176:161:46:350:189,161:5828,0,7007:.:1:1:.:.:.:-0.0132393
chr12	12029748	.	G	A	14874.599999999999	REJECT	NS=2;DP=397;DPB=451.0;AC=4;AN=4;AF=1.0;RO=0;AO=451;PRO=0.0;PAO=0.0;QR=0;QA=17043;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=254;SAR=197;SRP=0.0;SAP=18.6536;AB=0.0;ABP=0.0;RUN=1;RPP=3.4003;RPPR=0.0;RPL=230.0;RPR=221.0;EPP=6.01955;EPPR=0.0;DPRA=0.0;ODDS=71.6658;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995565;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8702;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.405;SOR=1.064	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.9915:107:0:0:108:4053:-364.794,-29.249,0.0:107:100:107:0,107:4197,321,0:1:.:1:.:.:.:-0.000759707	1/1:126.9915:343:0:0:343:12990:-1168.32,-92.8331,0.0:343:100:343:0,343:14508,1011,0:.:1:1:.:.:.:-0.0132393
chr12	12030052	.	A	C	13643.75	REJECT	NS=2;DP=361;DPB=423.0;AC=4;AN=4;AF=1.0;RO=0;AO=423;PRO=0.0;PAO=0.0;QR=0;QA=16167;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=206;SAR=217;SRP=0.0;SAP=3.63145;AB=0.0;ABP=0.0;RUN=1;RPP=7.9436;RPPR=0.0;RPL=227.0;RPR=196.0;EPP=3.0565;EPPR=0.0;DPRA=0.0;ODDS=80.3892;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995272;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.325;SOR=0.8555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.6915:122:0:0:122:4627:-416.387,-33.0375,0.0:122:100:122:0,122:5016,367,0:1:.:1:.:.:.:-0.000759707	1/1:125.6915:300:0:0:301:11540:-1037.97,-81.5136,0.0:300:100:300:0,299:12820,888,0:.:1:1:.:.:.:-0.0132393
chr12	12030117	.	A	G	12112.2	REJECT	NS=2;DP=325;DPB=376.0;AC=4;AN=4;AF=1.0;RO=0;AO=376;PRO=0.0;PAO=0.0;QR=0;QA=14192;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=193;SAR=183;SRP=0.0;SAP=3.58782;AB=0.0;ABP=0.0;RUN=1;RPP=6.91433;RPPR=0.0;RPL=175.0;RPR=201.0;EPP=4.48875;EPPR=0.0;DPRA=0.0;ODDS=66.5866;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992021;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.655;SOR=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.412:100:0:0:100:3753:-337.761,-27.0431,0.0:100:100:100:0,100:4065,299,0:1:.:1:.:.:.:-0.000759707	1/1:126.412:275:0:0:276:10439:-938.947,-74.6973,0.0:275:100:275:0,274:11533,804,0:.:1:1:.:.:.:-0.0132393
chr12	12030236	.	C	CT	821.618	REJECT	NS=2;DP=232;DPB=333.821;AC=2;AN=2;AF=0.0;RO=108;AO=18;PRO=83.3333;PAO=54.3333;QR=3879;QA=517;PQR=2914.33;PQA=1842.33;SRF=44;SRR=64;SAF=11;SAR=7;SRP=11.0528;SAP=4.9405;AB=0.0775862;ABP=362.576;RUN=1;RPP=3.49285;RPPR=3.09072;RPL=8.0;RPR=10.0;EPP=4.9405;EPPR=3.73412;DPRA=0.0;ODDS=40.6266;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=3;MEANALT=22.5;LEN=1;MQM=58.8889;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:60:31:1077:4:90:-22.4543,-19.9717,-126.231:4:8:50:.:.:1:.:.:.:-0.000759707	./1:160.002:172:77:2802:14:427:-65.2604,-46.3116,-360.544:14:11:128:.:.:1:.:.:.:-0.0132393
chr12	12030236	.	CT	C	821.618	REJECT	NS=2;DP=232;DPB=333.821;AC=2;AN=4;AF=0.5;RO=108;AO=36;PRO=83.3333;PAO=55.3333;QR=3879;QA=1134;PQR=2914.33;PQA=1905.83;SRF=44;SRR=64;SAF=21;SAR=15;SRP=11.0528;SAP=5.18177;AB=0.155172;ABP=242.621;RUN=1;RPP=6.8707;RPPR=3.09072;RPL=14.0;RPR=22.0;EPP=3.25157;EPPR=3.73412;DPRA=0.0;ODDS=40.6266;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=3;MEANALT=22.5;LEN=1;MQM=60.5556;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.057;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.402;QD=1.73;ReadPosRankSum=-0.572;SOR=1.184;ClippingRankSum=-1.001	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:60:31:1077:8:251:-22.4543,0.0,-129.071:13:23:55:43,18:165,0,733:1:.:1:.:.:.:-0.000759707	0/1:160.002:172:77:2802:28:883:-65.2604,0.0,-346.531:28:22:128:.:.:.:.:1:.:.:.:-0.0132393
chr12	12030236	.	CTT	C	821.618	REJECT	NS=2;DP=232;DPB=333.821;AC=2;AN=2;AF=0.0;RO=108;AO=16;PRO=83.3333;PAO=43.0;QR=3879;QA=493;PQR=2914.33;PQA=1484.5;SRF=44;SRR=64;SAF=7;SAR=9;SRP=11.0528;SAP=3.55317;AB=0.0689655;ABP=377.402;RUN=1;RPP=5.18177;RPPR=3.09072;RPL=10.0;RPR=6.0;EPP=7.89611;EPPR=3.73412;DPRA=0.0;ODDS=40.6266;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=3;MEANALT=22.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990741;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:60:31:1077:7:221:-22.4543,-16.9222,-147.613:7:14:50:.:.:1:.:.:.:-0.000759707	./1:160.002:172:77:2802:9:272:-65.2604,-69.7114,-432.395:9:7:128:.:.:1:.:.:.:-0.0132393
chr12	12030306	.	A	G	11942.599999999999	REJECT	NS=2;DP=332;DPB=383.0;AC=4;AN=4;AF=1.0;RO=1;AO=382;PRO=0.0;PAO=0.0;QR=36;QA=13957;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=215;SAR=167;SRP=5.18177;SAP=16.1073;AB=0.0;ABP=0.0;RUN=1;RPP=9.58156;RPPR=5.18177;RPL=174.0;RPR=208.0;EPP=3.37411;EPPR=5.18177;DPRA=0.0;ODDS=67.8279;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0262;MQMR=60.0;PAIRED=0.994764;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.857;Dels=0.0;FS=0.0;HaplotypeScore=19.4157;MLEAC=2;MLEAF=1.0;MQ=60.02;MQRankSum=1.51;QD=26.095;ReadPosRankSum=1.276;SOR=0.581	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:102:3679:-331.132,-27.5822,0.0:97:100:97:0,93:3708,278,0:1:.:1:.:.:.:-0.000759707	1/1:129.501:281:1:36:280:10278:-921.271,-72.7688,0.0:280:100:281:1,280:11442,778,0:.:1:1:.:.:.:-0.0132393
chr12	12031465	.	A	C	5601.77	REJECT	NS=2;DP=350;DPB=398.0;AC=2;AN=4;AF=0.5;RO=198;AO=200;PRO=0.0;PAO=0.0;QR=7652;QA=7552;PQR=0.0;PQA=0.0;SRF=90;SRR=108;SAF=105;SAR=95;SRP=6.56362;SAP=4.09604;AB=0.502513;ABP=3.03212;RUN=1;RPP=4.57376;RPPR=10.424;RPL=94.0;RPR=106.0;EPP=5.13834;EPPR=3.40511;DPRA=0.0;ODDS=295.493;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995;PAIREDR=0.994949;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6565;Dels=0.0;FS=6.2025;HaplotypeScore=4.8989;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7015;QD=17.035;ReadPosRankSum=-0.0865;SOR=0.873;ClippingRankSum=1.778	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2355:92:48:1857:45:1706:-128.379,0.0,-141.951:44:48:92:48,44:1476,0,1758:1:.:1:.:.:.:-0.000759707	0/1:121.2355:304:150:5795:155:5846:-443.222,0.0,-438.667:154:51:304:149,154:5581,0,5535:.:1:1:.:.:.:-0.0132393
chr12	12031761	.	G	GA	2669.73	PASS	SOMATIC;DP=242;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.671;FS=2.64;MLEAC=1;MLEAF=0.5;MQ=58.98;MQRankSum=2.383;QD=11.03;ReadPosRankSum=0.21;SOR=1.012	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.000759707	./1:35,43:242:88.0:2707,1572,2147483647:43:25:171:.:1:.:.:.:.:-0.0132393
chr12	12031761	.	G	GAA	552.73	PASS	DP=65;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.065;FS=6.368;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.457;QD=8.5;ReadPosRankSum=-1.763;SOR=0.053;ClippingRankSum=0.979	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11,26:37:92.0:539,0,92:26:70:37:1:.:.:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12031761	.	G	GAAA	2669.73	PASS	SOMATIC;DP=242;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.671;FS=2.64;MLEAC=1;MLEAF=0.5;MQ=58.98;MQRankSum=2.383;QD=11.03;ReadPosRankSum=0.21;SOR=1.012	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.000759707	./1:35,93:242:88.0:2707,88,642:93:54:171:.:1:.:.:.:.:-0.0132393
chr12	12031761	.	GGA	G	5842.58	REJECT	NS=2;DP=279;DPB=339.75;AC=0;AN=4;AF=0.0;RO=19;AO=7;PRO=1.61905;PAO=2.08571;QR=610;QA=160;PQR=42.9286;PQA=50.4286;SRF=8;SRR=11;SAF=3;SAR=4;SRP=4.03889;SAP=3.32051;AB=0.0250896;ABP=549.575;RUN=1;RPP=18.2106;RPPR=5.8675;RPL=0.0;RPR=7.0;EPP=3.32051;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=6;MEANALT=11.0;LEN=2;MQM=60.0;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:71.2816:58:2:75:4:90:-163.809,-130.124,-150.229:4:7:56:.:.:.:.:.:.:-0.000759707	0/0:160.002:221:17:535:3:70:-447.835,-437.377,-496.314:3:1:206:.:.:.:.:.:.:-0.0132393
chr12	12031762	.	G	A	5842.58	REJECT	NS=2;DP=258;DPB=339.75;AC=2;AN=2;AF=0.5;RO=19;AO=142;PRO=1.61905;PAO=4.26905;QR=610;QA=4748;PQR=42.9286;PQA=122.529;SRF=8;SRR=11;SAF=94;SAR=48;SRP=4.03889;SAP=35.3683;AB=0.508961;ABP=3.20488;RUN=1;RPP=116.11;RPPR=5.8675;RPL=114.0;RPR=28.0;EPP=54.4528;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=snp;CIGAR=1M1X2M;NUMALT=6;MEANALT=11.0;LEN=1;MQM=58.4789;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=2.46;Dels=0.02;FS=6.347;HaplotypeScore=154.914;MLEAC=1;MLEAF=0.5;MQ=59.48;MQRankSum=0.3785;QD=26.075;ReadPosRankSum=-1.0865;SOR=0.5455;ClippingRankSum=-1.155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.1408:52:2:75:28:897:-163.809,-21.1957,-13.7447:34:69:51:5,41:1422,0,57:1:.:1:.:.:.:-0.000759707	./1:129.501:226:17:535:114:3851:-447.835,-73.5521,-76.9455:158:71:218:28,203:7260,0,130:.:1:1:.:.:.:-0.0132393
chr12	12031762	.	G	AA	5842.58	REJECT	NS=2;DP=279;DPB=339.75;AC=0;AN=4;AF=0.0;RO=19;AO=23;PRO=1.61905;PAO=4.26905;QR=610;QA=716;PQR=42.9286;PQA=122.529;SRF=8;SRR=11;SAF=10;SAR=13;SRP=4.03889;SAP=3.86001;AB=0.0824373;ABP=425.545;RUN=1;RPP=14.4341;RPPR=5.8675;RPL=17.0;RPR=6.0;EPP=3.86001;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=complex;CIGAR=1M1I1X2M;NUMALT=6;MEANALT=11.0;LEN=5;MQM=60.0;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:71.2816:58:2:75:6:192:-163.809,-78.0535,-76.1304:6:11:56:.:.:.:.:.:.:-0.000759707	0/0:160.002:221:17:535:17:524:-447.835,-345.78,-375.328:17:8:206:.:.:.:.:.:.:-0.0132393
chr12	12031762	.	G	AAA	5842.58	REJECT	NS=2;DP=279;DPB=339.75;AC=2;AN=2;AF=0.5;RO=19;AO=54;PRO=1.61905;PAO=4.26905;QR=610;QA=1592;PQR=42.9286;PQA=122.529;SRF=8;SRR=11;SAF=23;SAR=31;SRP=4.03889;SAP=5.5839;AB=0.193548;ABP=230.595;RUN=1;RPP=3.6537;RPPR=5.8675;RPL=25.0;RPR=29.0;EPP=7.03155;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=complex;CIGAR=1M2I1X2M;NUMALT=6;MEANALT=11.0;LEN=6;MQM=59.6296;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:71.2816:58:2:75:9:259:-163.809,-72.8314,-70.1178:9:16:56:.:.:1:.:.:.:-0.000759707	./1:160.002:221:17:535:45:1333:-447.835,-280.657,-302.724:45:22:206:.:.:1:.:.:.:-0.0132393
chr12	12031762	.	G	AAAA	5842.58	REJECT	NS=2;DP=279;DPB=339.75;AC=0;AN=4;AF=0.0;RO=19;AO=9;PRO=1.61905;PAO=4.26905;QR=610;QA=220;PQR=42.9286;PQA=122.529;SRF=8;SRR=11;SAF=4;SAR=5;SRP=4.03889;SAP=3.25157;AB=0.0322581;ABP=533.2;RUN=1;RPP=3.25157;RPPR=5.8675;RPL=4.0;RPR=5.0;EPP=5.18177;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=complex;CIGAR=1M3I1X2M;NUMALT=6;MEANALT=11.0;LEN=7;MQM=56.4444;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:71.2816:58:2:75:3:77:-163.809,-87.6041,-86.5045:3:5:56:.:.:.:.:.:.:-0.000759707	0/0:160.002:221:17:535:6:143:-447.835,-377.098,-409.637:6:3:206:.:.:.:.:.:.:-0.0132393
chr12	12031762	.	G	GAAA	5842.58	REJECT	NS=2;DP=279;DPB=339.75;AC=0;AN=4;AF=0.0;RO=19;AO=8;PRO=1.61905;PAO=2.21905;QR=610;QA=161;PQR=42.9286;PQA=65.5286;SRF=8;SRR=11;SAF=0;SAR=8;SRP=4.03889;SAP=20.3821;AB=0.0286738;ABP=541.356;RUN=1;RPP=7.35324;RPPR=5.8675;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=3.12459;DPRA=0.0;ODDS=16.4132;GTI=0;TYPE=ins;CIGAR=2M3I2M;NUMALT=6;MEANALT=11.0;LEN=3;MQM=60.0;MQMR=57.1579;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:71.2816:58:2:75:4:68:-163.809,-128.686,-131.512:4:7:56:.:.:.:.:.:.:-0.000759707	0/0:160.002:221:17:535:4:93:-447.835,-428.558,-468.492:4:2:206:.:.:.:.:.:.:-0.0132393
chr12	12031894	.	G	C	2584.14	PASS	SOMATIC;NS=2;DP=396;DPB=396.0;AC=1;AN=3;AF=0.25;RO=297;AO=99;PRO=0.0;PAO=0.0;QR=11291;QA=3797;PQR=0.0;PQA=0.0;SRF=176;SRR=121;SAF=55;SAR=44;SRP=25.1271;SAP=5.66432;AB=0.346154;ABP=61.8071;RUN=1;RPP=4.78696;RPPR=5.6497;RPL=45.0;RPR=54.0;EPP=3.55865;EPPR=8.34028;DPRA=2.6;ODDS=69.5179;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.976431;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.273;Dels=0.0;FS=2.13;HaplotypeScore=5.9318;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.378;QD=12.06;ReadPosRankSum=-1.729;SOR=0.55	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:108:110:4094:0:0:0.0,-29.7653,-368.449:0:0:108:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:280:187:7197:99:3797:-264.074,0.0,-569.873:98:35:280:180,95:38.0:0.342:2:3404,0,7007:.:1:1:.:.:1:-0.0132393
chr12	12032966	.	T	A	112.153	REJECT	NS=2;DP=75;DPB=192.378;AC=2;AN=2;AF=0.0;RO=27;AO=2;PRO=59.4;PAO=29.5167;QR=1013;QA=16;PQR=2058.47;PQA=1014.67;SRF=5;SRR=22;SAF=0;SAR=2;SRP=26.2531;SAP=7.35324;AB=0.0952381;ABP=32.8939;RUN=1;RPP=7.35324;RPPR=3.73412;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=6.95112;DPRA=0.0;ODDS=6.2464;GTI=0;TYPE=snp;CIGAR=1X36M;NUMALT=5;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.409:21:9:336:2:16:-3.94831,-24.0278,-275.279:2:12:17:.:.:1:.:.:.:-0.000759707	./1:78.0148:54:18:677:0:0:-12.5399,-88.3941,-908.874:0:0:36:.:.:1:.:.:.:-0.0132393
chr12	12032966	.	T	TA	112.153	REJECT	NS=2;DP=75;DPB=192.378;AC=2;AN=4;AF=0.5;RO=27;AO=9;PRO=59.4;PAO=51.4;QR=1013;QA=263;PQR=2058.47;PQA=1755.47;SRF=5;SRR=22;SAF=1;SAR=8;SRP=26.2531;SAP=14.8328;AB=0.12;ABP=97.0785;RUN=1;RPP=3.25157;RPPR=3.73412;RPL=4.0;RPR=5.0;EPP=3.25157;EPPR=6.95112;DPRA=0.0;ODDS=6.2464;GTI=0;TYPE=ins;CIGAR=1M1I36M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:26.409:21:9:336:3:89:-3.94831,0.0,-34.9032:3:18:17:.:.:1:.:.:.:-0.000759707	0/1:78.0148:54:18:677:6:174:-12.5399,0.0,-75.3055:6:17:36:.:.:1:.:.:.:-0.0132393
chr12	12032966	.	T	TAA	112.153	REJECT	NS=2;DP=75;DPB=192.378;AC=2;AN=2;AF=0.0;RO=27;AO=5;PRO=59.4;PAO=52.4;QR=1013;QA=113;PQR=2058.47;PQA=1781.47;SRF=5;SRR=22;SAF=0;SAR=5;SRP=26.2531;SAP=13.8677;AB=0.0925926;ABP=80.8616;RUN=1;RPP=13.8677;RPPR=3.73412;RPL=5.0;RPR=0.0;EPP=13.8677;EPPR=6.95112;DPRA=0.0;ODDS=6.2464;GTI=0;TYPE=ins;CIGAR=1M2I36M;NUMALT=5;MEANALT=19.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.409:21:9:336:0:0:-3.94831,-5.05883,-40.4894:0:0:17:.:.:1:.:.:.:-0.000759707	./1:78.0148:54:18:677:5:113:-12.5399,-5.30122,-80.8786:5:14:36:.:.:1:.:.:.:-0.0132393
chr12	12032966	.	TA	T	112.153	REJECT	NS=2;DP=75;DPB=192.378;AC=2;AN=2;AF=0.0;RO=27;AO=8;PRO=59.4;PAO=41.8167;QR=1013;QA=244;PQR=2058.47;PQA=1424.97;SRF=5;SRR=22;SAF=3;SAR=5;SRP=26.2531;SAP=4.09604;AB=0.106667;ABP=103.796;RUN=1;RPP=3.0103;RPPR=3.73412;RPL=4.0;RPR=4.0;EPP=4.09604;EPPR=6.95112;DPRA=0.0;ODDS=6.2464;GTI=0;TYPE=del;CIGAR=1M1D35M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=62.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.409:21:9:336:1:31:-3.94831,-7.225,-112.053:1:6:17:.:.:1:.:.:.:-0.000759707	./1:78.0148:54:18:677:7:213:-12.5399,-16.5199,-348.854:7:19:36:.:.:1:.:.:.:-0.0132393
chr12	12032966	.	TAAA	T	112.153	REJECT	NS=2;DP=75;DPB=192.378;AC=2;AN=2;AF=0.0;RO=27;AO=2;PRO=59.4;PAO=35.4667;QR=1013;QA=41;PQR=2058.47;PQA=1212.97;SRF=5;SRR=22;SAF=1;SAR=1;SRP=26.2531;SAP=3.0103;AB=0.0952381;ABP=32.8939;RUN=1;RPP=3.0103;RPPR=3.73412;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=6.95112;DPRA=0.0;ODDS=6.2464;GTI=0;TYPE=del;CIGAR=1M3D33M;NUMALT=5;MEANALT=7.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.409:21:9:336:2:41:-3.94831,-12.7262,-141.203:2:12:17:.:.:1:.:.:.:-0.000759707	./1:78.0148:54:18:677:0:0:-12.5399,-48.3006,-440.901:0:0:36:.:.:1:.:.:.:-0.0132393
chr12	12032986	.	G	A	33.77	PASS	DP=49;AC=1;AN=4;AF=0.5;BaseQRankSum=-3.55;FS=17.281;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.594;QD=0.69;ReadPosRankSum=-2.159;SOR=4.011;ClippingRankSum=-0.362	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:38,8:46:62.0:62,0,1525:8:17:46:1:.:.:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12032987	.	G	A	33.77	PASS	DP=51;AC=1;AN=4;AF=0.5;BaseQRankSum=-3.5;FS=17.41;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.373;QD=0.66;ReadPosRankSum=-2.227;SOR=4.03;ClippingRankSum=0.761	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,8:48:62.0:62,0,1525:8:17:48:1:.:.:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12033570	.	C	G	4546.05	PASS	SOMATIC;NS=2;DP=490;DPB=490.0;AC=1;AN=3;AF=0.25;RO=327;AO=163;PRO=0.0;PAO=0.0;QR=12610;QA=6288;PQR=0.0;PQA=0.0;SRF=174;SRR=153;SAF=80;SAR=83;SRP=5.9388;SAP=3.1302;AB=0.420103;ABP=24.5235;RUN=1;RPP=3.66307;RPPR=5.9388;RPL=78.0;RPR=85.0;EPP=6.00773;EPPR=6.52317;DPRA=3.80392;ODDS=64.6447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993865;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.906;Dels=0.0;FS=3.864;HaplotypeScore=6.7681;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.822;QD=15.12;ReadPosRankSum=-1.088;SOR=0.633	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:100:102:3953:0:0:0.0,-27.6489,-355.807:0:0:100:98,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:386:225:8657:163:6288:-460.47,0.0,-673.49:162:42:386:214,153:38.0:0.414:2:5866,0,8458:.:1:1:.:.:1:-0.0132393
chr12	12033871	.	C	T	2507.99	PASS	SOMATIC;NS=2;DP=412;DPB=412.0;AC=1;AN=3;AF=0.25;RO=313;AO=99;PRO=0.0;PAO=0.0;QR=11994;QA=3750;PQR=0.0;PQA=0.0;SRF=139;SRR=174;SAF=48;SAR=51;SRP=11.5089;SAP=3.20771;AB=0.33;ABP=78.317;RUN=1;RPP=3.55865;RPPR=27.1601;RPL=52.0;RPR=47.0;EPP=3.03223;EPPR=5.51478;DPRA=2.67857;ODDS=70.8319;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.905;Dels=0.0;FS=0.936;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.113;QD=10.87;ReadPosRankSum=-0.249;SOR=0.618	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:110:112:4230:0:0:0.0,-30.3359,-380.705:0:0:110:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:300:201:7764:99:3750:-256.041,0.0,-617.107:99:33:300:190,96:37.0:0.346:2:3300,0,7833:.:1:1:.:.:1:-0.0132393
chr12	12033974	.	C	A	1473.75	PASS	SOMATIC;NS=2;DP=240;DPB=240.0;AC=1;AN=3;AF=0.25;RO=180;AO=60;PRO=0.0;PAO=0.0;QR=6869;QA=2258;PQR=0.0;PQA=0.0;SRF=48;SRR=132;SAF=16;SAR=44;SRP=88.132;SAP=31.3842;AB=0.338983;ABP=42.8697;RUN=1;RPP=3.58936;RPPR=9.95901;RPL=28.0;RPR=32.0;EPP=3.58936;EPPR=6.09862;DPRA=2.80952;ODDS=40.3422;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8889;PAIRED=0.983333;PAIREDR=0.994444;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.435;Dels=0.0;FS=2.392;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.669;QD=11.06;ReadPosRankSum=0.296;SOR=0.472	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:63:63:2435:0:0:0.0,-17.0944,-219.144:0:0:63:63,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:177:117:4434:60:2258:-155.229,0.0,-350.995:60:34:177:117,60:37.0:0.339:2:1985,0,4413:.:1:1:.:.:1:-0.0132393
chr12	12035282	.	C	G	3138.24	PASS	SOMATIC;NS=2;DP=472;DPB=472.0;AC=1;AN=3;AF=0.25;RO=350;AO=121;PRO=0.0;PAO=0.0;QR=13230;QA=4644;PQR=0.0;PQA=0.0;SRF=176;SRR=174;SAF=65;SAR=56;SRP=3.03512;SAP=4.46393;AB=0.333333;ABP=90.593;RUN=1;RPP=3.45895;RPPR=7.20434;RPL=58.0;RPR=63.0;EPP=3.88966;EPPR=6.01314;DPRA=3.33028;ODDS=68.3195;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997143;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.805;Dels=0.0;FS=0.0;HaplotypeScore=4.8152;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.503;QD=11.23;ReadPosRankSum=-1.902;SOR=0.676	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:107:108:4002:0:0:0.0,-29.2448,-360.221:0:0:106:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:363:242:9228:121:4644:-319.396,0.0,-731.692:121:33:363:233,115:38.0:0.326:2:4105,0,9228:.:1:1:.:.:1:-0.0132393
chr12	12035664	.	A	G	9669.835	REJECT	NS=2;DP=395;DPB=457.0;AC=3;AN=4;AF=0.75;RO=112;AO=345;PRO=0.0;PAO=0.0;QR=4293;QA=13117;PQR=0.0;PQA=0.0;SRF=56;SRR=56;SAF=181;SAR=164;SRP=3.0103;SAP=4.8293;AB=0.664671;ABP=81.6774;RUN=1;RPP=3.06695;RPPR=6.81038;RPL=174.0;RPR=171.0;EPP=16.914;EPPR=3.08785;DPRA=0.0;ODDS=77.6284;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2029;MQMR=60.0;PAIRED=0.991304;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.608;Dels=0.0;FS=0.209;HaplotypeScore=6.8987;MLEAC=1;MLEAF=0.75;MQ=60.14;MQRankSum=0.616;QD=28.015;ReadPosRankSum=1.913;SOR=0.815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.0295:121:0:0:123:4552:-409.645,-33.2876,0.0:121:100:121:0,120:4796,360,0:1:.:1:.:.:.:-0.000759707	0/1:119.0295:333:112:4293:222:8565:-679.899,0.0,-295.679:221:66:333:112,221:8548,0,3798:.:1:1:.:.:.:-0.0132393
chr12	12035698	.	T	TC	8462.09	REJECT	NS=2;DP=379;DPB=496.875;AC=3;AN=4;AF=0.75;RO=98;AO=317;PRO=32.0;PAO=39.0;QR=3660;QA=11558;PQR=1124.0;PQA=1342.0;SRF=51;SRR=47;SAF=155;SAR=162;SRP=3.36483;SAP=3.34595;AB=0.677316;ABP=88.4886;RUN=1;RPP=9.59322;RPPR=6.20103;RPL=174.0;RPR=143.0;EPP=3.83916;EPPR=3.09893;DPRA=0.0;ODDS=67.2418;GTI=0;TYPE=ins;CIGAR=1M1I7M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.1577;MQMR=60.0;PAIRED=0.993691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.071;FS=2.1945;MLEAC=1;MLEAF=0.75;MQ=60.25;MQRankSum=-0.249;QD=24.985;RPA=4,5;RU=C;ReadPosRankSum=0.379;SOR=0.6815;STR;ClippingRankSum=0.826	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:105:3762:-344.777,-28.7768,0.0:105:99:106:1,106:3481,320,0:1:.:1:.:.:.:-0.000759707	0/1:129.501:326:98:3660:212:7796:-639.263,0.0,-254.378:215:68:315:103,218:7188,0,2968:.:1:1:.:.:.:-0.0132393
chr12	12035714	.	C	T	9235.935000000001	REJECT	NS=2;DP=383;DPB=439.0;AC=3;AN=4;AF=0.75;RO=110;AO=329;PRO=0.0;PAO=0.0;QR=4210;QA=12413;PQR=0.0;PQA=0.0;SRF=56;SRR=54;SAF=153;SAR=176;SRP=3.08926;SAP=6.50182;AB=0.666667;ABP=82.631;RUN=1;RPP=4.49535;RPPR=4.98437;RPL=172.0;RPR=157.0;EPP=3.17531;EPPR=3.08926;DPRA=0.0;ODDS=68.9137;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2736;MQMR=60.0;PAIRED=0.99696;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.315;Dels=0.0;FS=2.287;HaplotypeScore=5.7907;MLEAC=1;MLEAF=0.75;MQ=60.2;MQRankSum=1.418;QD=28.17;ReadPosRankSum=-0.241;SOR=0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:109:4059:-365.316,-29.5029,0.0:108:100:108:0,108:4372,324,0:1:.:1:.:.:.:-0.000759707	0/1:129.501:329:110:4210:220:8354:-662.055,0.0,-289.333:219:67:329:109,219:8291,0,3727:.:1:1:.:.:.:-0.0132393
chr12	12036210	.	C	CTTCTTCT	5230.73	PASS	SOMATIC;DP=114;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;MQ0=0;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=65.57;QD=15.29;SOR=3.007	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.000759707	./1:0,77:110:99.0:5268,882,909:77:90:86:.:1:.:.:.:.:-0.0132393
chr12	12036210	.	CTTTTTTTTTTT	C	3145.7299999999996	PASS	DP=71;AC=3;AN=3;AF=0.75;SPLITMULTIALLELIC;MQ0=0;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=62.77;QD=23.74;SOR=2.655	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,26:26:82.0:1098,82,0:26:100:26:1:.:.:.:.:.:-0.000759707	./1:0,9:110:99.0:5268,4363,2147483647:9:10:86:.:1:.:.:.:.:-0.0132393
chr12	12036213	.	TTTTTTTTTTTTT	CTTC	3827.79	REJECT	NS=2;DP=7;DPB=47.2979;AC=2;AN=2;AF=0.5;RO=0;AO=1;PRO=20.1;PAO=47.9333;QR=0;QA=15;PQR=662.85;PQA=1459.52;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.5;ABP=3.0103;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=0.522238;GTI=1;TYPE=complex;CIGAR=1M9D2M1X2M1X31M;NUMALT=4;MEANALT=2.0;LEN=38;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.00428:2:0:0:1:15:-156.413,-14.2935,-0.551346:1:50:2:.:.:1:.:.:.:-0.000759707	./1:21.7982:5:0:0:0:0:-230.768,-7.70895,-5.30887:0:0:5:.:.:1:.:.:.:-0.0132393
chr12	12036213	.	TTTTTTTTTTTTTTT	CTTC	3827.79	REJECT	NS=2;DP=7;DPB=47.2979;AC=2;AN=2;AF=0.5;RO=0;AO=4;PRO=20.1;PAO=45.9333;QR=0;QA=86;PQR=662.85;PQA=1384.52;SRF=0;SRR=0;SAF=1;SAR=3;SRP=0.0;SAP=5.18177;AB=0.571429;ABP=3.32051;RUN=1;RPP=3.0103;RPPR=0.0;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=0.522238;GTI=1;TYPE=complex;CIGAR=1M11D2M1X2M1X29M;NUMALT=4;MEANALT=2.5;LEN=36;MQM=58.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.00428:2:0:0:1:15:-156.413,-17.6281,-4.15765:1:50:2:.:.:1:.:.:.:-0.000759707	./1:21.7982:5:0:0:3:71:-230.768,-5.01095,-2.08827:3:60:5:.:.:1:.:.:.:-0.0132393
chr12	12036213	.	TTTTTTTTTTTTTTTT	CTTTG	3827.79	REJECT	NS=2;DP=7;DPB=47.2979;AC=0;AN=4;AF=0.0;RO=0;AO=1;PRO=20.1;PAO=11.9333;QR=0;QA=15;PQR=662.85;PQA=396.267;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.2;ABP=6.91895;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=0.522238;GTI=1;TYPE=complex;CIGAR=1M11D2M1X3M1X28M;NUMALT=4;MEANALT=3.0;LEN=36;MQM=40.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.00428:2:0:0:0:0:-156.413,-122.046,-120.136:0:0:2:.:.:.:.:.:.:-0.000759707	0/0:21.7982:5:0:0:1:15:-230.768,-231.411,-274.205:1:20:5:.:.:.:.:.:.:-0.0132393
chr12	12036216	.	TTTTTTTTTTTT	C	3827.79	REJECT	NS=2;DP=7;DPB=47.2979;AC=0;AN=4;AF=0.0;RO=0;AO=1;PRO=20.1;PAO=11.1;QR=0;QA=15;PQR=662.85;PQA=345.85;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.2;ABP=6.91895;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=0.522238;GTI=1;TYPE=complex;CIGAR=1M11D5M1X29M;NUMALT=4;MEANALT=3.0;LEN=36;MQM=40.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.00428:2:0:0:0:0:-156.413,-156.678,-158.026:0:0:2:.:.:.:.:.:.:-0.000759707	0/0:21.7982:5:0:0:1:15:-230.768,-230.955,-253.949:1:20:5:.:.:.:.:.:.:-0.0132393
chr12	12036224	.	T	C	1113.77	PASS	DP=28;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=59.96;QD=34.54;SOR=2.147	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,28:28:84.0:1142,84,0:28:100:28:1:.:.:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12036227	.	T	C	998.77	PASS	DP=24;AC=2;AN=4;AF=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=59.96;QD=33.64;SOR=1.802	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,24:24:75.0:1027,75,0:24:100:24:1:.:.:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0132393
chr12	12036301	.	T	C	1774.37	REJECT	NS=2;DP=57;DPB=69.0;AC=4;AN=4;AF=1.0;RO=1;AO=68;PRO=0.0;PAO=0.0;QR=16;QA=2219;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=32;SAR=36;SRP=5.18177;SAP=3.52123;AB=0.0;ABP=0.0;RUN=1;RPP=3.13803;RPPR=5.18177;RPL=33.0;RPR=35.0;EPP=4.1599;EPPR=5.18177;DPRA=0.0;ODDS=18.6012;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.970588;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.496;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.339;QD=33.74;ReadPosRankSum=0.551;SOR=0.629	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:72.392:22:0:0:23:737:-66.548,-6.20334,0.0:22:100:22:0,22:751,64,0:1:.:1:.:.:.:-0.000759707	1/1:114.51:46:1:16:45:1482:-131.37,-10.2311,0.0:45:98:46:1,45:1621,120,0:.:1:1:.:.:.:-0.0132393
chr12	12036529	.	A	G	6329.345	REJECT	NS=2;DP=259;DPB=299.0;AC=3;AN=4;AF=0.75;RO=72;AO=227;PRO=0.0;PAO=0.0;QR=2779;QA=8701;PQR=0.0;PQA=0.0;SRF=48;SRR=24;SAF=160;SAR=67;SRP=20.3821;SAP=85.7463;AB=0.672727;ABP=60.0213;RUN=1;RPP=72.1243;RPPR=15.074;RPL=71.0;RPR=156.0;EPP=3.78514;EPPR=10.7311;DPRA=0.0;ODDS=50.3197;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9119;MQMR=60.0;PAIRED=0.995595;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.506;Dels=0.0;FS=0.5955;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.41;QD=28.445;ReadPosRankSum=-0.264;SOR=1.5075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:79:3024:-272.195,-21.4276,0.0:79:100:79:0,79:3317,238,0:1:.:1:.:.:.:-0.000759707	0/1:129.501:219:72:2779:148:5677:-451.112,0.0,-190.395:147:67:219:72,147:5667,0,2451:.:1:1:.:.:.:-0.0132393
chr12	12037081	.	G	A	6374.34	REJECT	NS=2;DP=432;DPB=481.0;AC=2;AN=4;AF=0.5;RO=256;AO=223;PRO=0.0;PAO=0.0;QR=9868;QA=8600;PQR=0.0;PQA=0.0;SRF=128;SRR=128;SAF=107;SAR=116;SRP=3.0103;SAP=3.79904;AB=0.463617;ABP=8.54056;RUN=1;RPP=5.20125;RPPR=9.66043;RPL=119.0;RPR=104.0;EPP=3.02004;EPPR=3.55317;DPRA=0.0;ODDS=276.722;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991031;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.729;Dels=0.0;FS=2.588;HaplotypeScore=9.8229;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.158;QD=16.4;ReadPosRankSum=0.2285;SOR=0.781;ClippingRankSum=-1.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:54:2028:42:1628:-120.537,0.0,-156.533:42:44:95:53,42:1512,0,1904:1:.:1:.:.:.:-0.000759707	0/1:129.501:383:202:7840:181:6972:-523.314,0.0,-601.377:180:47:382:202,180:6609,0,7642:.:1:1:.:.:.:-0.0132393
chr12	12037132	.	T	C	3377.54	PASS	SOMATIC;NS=2;DP=433;DPB=433.0;AC=1;AN=3;AF=0.25;RO=305;AO=127;PRO=0.0;PAO=0.0;QR=11472;QA=4822;PQR=0.0;PQA=0.0;SRF=155;SRR=150;SAF=58;SAR=69;SRP=3.18829;SAP=5.07918;AB=0.379104;ABP=45.5387;RUN=1;RPP=3.16418;RPPR=3.35916;RPL=62.0;RPR=65.0;EPP=3.0274;EPPR=3.35916;DPRA=3.41837;ODDS=62.0778;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996721;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.444;Dels=0.0;FS=3.019;HaplotypeScore=6.8395;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.686;QD=13.16;ReadPosRankSum=-0.957;SOR=0.862	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:94:98:3674:0:0:0.0,-26.5341,-330.704:0:0:94:91,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:334:207:7798:127:4822:-343.304,0.0,-611.318:127:38:333:202,123:38.0:0.376:2:4425,0,7622:.:1:1:.:.:1:-0.0132393
chr12	12037178	.	G	A	5286.835	REJECT	NS=2;DP=360;DPB=414.0;AC=2;AN=4;AF=0.5;RO=223;AO=191;PRO=0.0;PAO=0.0;QR=8485;QA=7259;PQR=0.0;PQA=0.0;SRF=108;SRR=115;SAF=95;SAR=96;SRP=3.48744;SAP=3.02167;AB=0.461353;ABP=8.38128;RUN=1;RPP=3.56738;RPPR=5.20125;RPL=99.0;RPR=92.0;EPP=4.38594;EPPR=3.02004;DPRA=0.0;ODDS=280.053;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979058;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.161;Dels=0.0;FS=0.434;HaplotypeScore=6.9127;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.616;QD=15.315;ReadPosRankSum=0.2485;SOR=0.6665;ClippingRankSum=-0.939	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5705:102:61:2314:44:1673:-122.14,0.0,-179.837:42:41:102:59,41:1390,0,2158:1:.:1:.:.:.:-0.000759707	0/1:117.5705:308:162:6171:147:5586:-419.162,0.0,-471.382:146:47:308:162,145:5251,0,5975:.:1:1:.:.:.:-0.0132393
chr12	12037318	.	C	G	6195.360000000001	REJECT	NS=2;DP=419;DPB=485.0;AC=2;AN=4;AF=0.5;RO=259;AO=226;PRO=0.0;PAO=0.0;QR=9902;QA=8632;PQR=0.0;PQA=0.0;SRF=111;SRR=148;SAF=123;SAR=103;SRP=14.4881;SAP=6.85361;AB=0.465979;ABP=7.88604;RUN=1;RPP=5.47002;RPPR=21.5307;RPL=121.0;RPR=105.0;EPP=3.04873;EPPR=10.0613;DPRA=0.0;ODDS=397.586;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.992278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.489;Dels=0.0;FS=10.7585;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.412;QD=16.3;ReadPosRankSum=-0.295;SOR=0.653;ClippingRankSum=0.885	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:130:71:2672:60:2315:-172.838,0.0,-204.966:60:46:130:69,60:2045,0,2402:1:.:1:.:.:.:-0.000759707	0/1:129.501:354:188:7230:166:6317:-472.318,0.0,-554.387:166:47:354:188,166:6035,0,7011:.:1:1:.:.:.:-0.0132393
chr12	12044534	.	G	GA	274.307	REJECT	NS=2;DP=297;DPB=333.067;AC=2;AN=2;AF=0.0;RO=236;AO=15;PRO=31.1667;PAO=22.1667;QR=8893;QA=506;PQR=1098.5;PQA=784.5;SRF=63;SRR=173;SAF=5;SAR=10;SRP=114.344;SAP=6.62942;AB=0.0505051;ABP=524.229;RUN=1;RPP=14.7363;RPPR=50.7091;RPL=12.0;RPR=3.0;EPP=3.15506;EPPR=9.23028;DPRA=0.0;ODDS=30.1364;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995763;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.707:82:66:2459:2:58:-14.416,-28.4385,-238.777:2:3:79:.:.:1:.:.:.:-0.000759707	./1:135.967:215:170:6434:13:448:-21.0956,-31.9963,-579.707:13:6:205:.:.:1:.:.:.:-0.0132393
chr12	12044534	.	GA	G	274.307	REJECT	NS=2;DP=297;DPB=333.067;AC=2;AN=4;AF=0.5;RO=236;AO=33;PRO=31.1667;PAO=20.6667;QR=8893;QA=1231;PQR=1098.5;PQA=723.0;SRF=63;SRR=173;SAF=8;SAR=25;SRP=114.344;SAP=22.0271;AB=0.111111;ABP=393.152;RUN=1;RPP=14.1309;RPPR=50.7091;RPL=23.0;RPR=10.0;EPP=4.65535;EPPR=9.23028;DPRA=0.0;ODDS=30.1364;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995763;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.091;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.046;QD=0.46;ReadPosRankSum=-0.597;SOR=0.419;ClippingRankSum=-0.232	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:104.8535:81:66:2459:11:401:-14.416,0.0,-207.898:11:14:80:69,12:80,0,1623:1:.:1:.:.:.:-0.000759707	0/1:135.967:215:170:6434:22:830:-21.0956,0.0,-576.657:22:11:205:.:.:.:.:1:.:.:.:-0.0132393
chr12	12772733	.	T	C	4868.265	REJECT	NS=2;DP=365;DPB=408.0;AC=2;AN=4;AF=0.5;RO=232;AO=176;PRO=0.0;PAO=0.0;QR=8977;QA=6779;PQR=0.0;PQA=0.0;SRF=107;SRR=125;SAF=92;SAR=84;SRP=6.04287;SAP=3.79993;AB=0.431373;ABP=19.7008;RUN=1;RPP=3.20771;RPPR=3.34725;RPL=86.0;RPR=90.0;EPP=53.5464;EPPR=32.3626;DPRA=0.0;ODDS=256.44;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99569;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8745;Dels=0.0;FS=6.3895;HaplotypeScore=5.8657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.269;QD=15.3;ReadPosRankSum=-0.1195;SOR=0.6565;ClippingRankSum=-0.16	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5:84:46:1769:39:1520:-113.785,0.0,-136.224:38:45:84:46,37:1317,0,1587:1:.:1:.:.:.:-0.000759707	0/1:117.5:322:186:7208:137:5259:-385.895,0.0,-560.838:137:42:322:185,137:4880,0,7072:.:1:1:.:.:.:-0.0132393
chr12	12773521	.	A	G	5410.88	REJECT	NS=2;DP=361;DPB=417.0;AC=2;AN=4;AF=0.5;RO=219;AO=197;PRO=0.0;PAO=0.0;QR=8426;QA=7661;PQR=0.0;PQA=0.0;SRF=106;SRR=113;SAF=104;SAR=93;SRP=3.49615;SAP=4.34405;AB=0.472422;ABP=5.765;RUN=1;RPP=3.02132;RPPR=3.81345;RPL=98.0;RPR=99.0;EPP=33.9731;EPPR=30.8627;DPRA=0.0;ODDS=353.16;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989848;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3145;Dels=0.0;FS=1.731;HaplotypeScore=6.8988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.4415;QD=17.07;ReadPosRankSum=0.3805;SOR=0.739;ClippingRankSum=0.065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:53:2048:57:2222:-170.163,0.0,-154.505:55:51:108:53,54:1915,0,1797:1:.:1:.:.:.:-0.000759707	0/1:129.501:306:166:6378:140:5439:-406.327,0.0,-490.775:140:46:306:166,140:5178,0,6199:.:1:1:.:.:.:-0.0132393
chr12	12775191	.	G	C	2598.98	PASS	SOMATIC;NS=2;DP=411;DPB=411.0;AC=1;AN=3;AF=0.25;RO=310;AO=101;PRO=0.0;PAO=0.0;QR=11791;QA=3887;PQR=0.0;PQA=0.0;SRF=181;SRR=129;SAF=60;SAR=41;SRP=21.9511;SAP=10.7717;AB=0.333333;ABP=76.1165;RUN=1;RPP=6.64375;RPPR=7.04504;RPL=44.0;RPR=57.0;EPP=16.4476;EPPR=59.7488;DPRA=2.80556;ODDS=68.2626;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.970297;PAIREDR=0.996774;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.733;Dels=0.0;FS=1.477;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.058;QD=11.23;ReadPosRankSum=-0.768;SOR=0.799	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:104:108:4032:0:0:0.0,-29.2201,-362.857:0:0:104:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.000759707	0/1:129.501:302:202:7759:101:3887:-267.555,0.0,-615.821:100:33:302:194,95:38.0:0.327:2:3421,0,7778:.:1:1:.:.:1:-0.0132393
chr12	12871099	.	T	G	1725.6599999999999	REJECT	NS=2;DP=370;DPB=418.0;AC=2;AN=4;AF=0.5;RO=327;AO=91;PRO=0.0;PAO=0.0;QR=12456;QA=3441;PQR=0.0;PQA=0.0;SRF=158;SRR=169;SAF=42;SAR=49;SRP=3.81381;SAP=4.17955;AB=0.217703;ABP=292.346;RUN=1;RPP=7.04303;RPPR=7.85129;RPL=52.0;RPR=39.0;EPP=3.03416;EPPR=3.17631;DPRA=0.0;ODDS=151.899;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0306;PAIRED=0.978022;PAIREDR=0.993884;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4155;Dels=0.0;FS=2.2365;HaplotypeScore=4.8376;MLEAC=1;MLEAF=0.5;MQ=60.015;MQRankSum=0.366;QD=9.765;ReadPosRankSum=0.741;SOR=0.855;ClippingRankSum=1.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.931:93:48:1832:47:1735:-130.442,0.0,-139.204:46:49:93:47,45:1576,0,1723:1:.:1:.:.:.:-0.000759707	0/1:117.931:322:279:10624:44:1706:-65.9697,0.0,-868.106:44:14:322:278,44:959,0,10875:.:1:1:.:.:.:-0.0132393
chr12	16501995	.	G	A	4996.76	REJECT	NS=2;DP=290;DPB=332.0;AC=2;AN=4;AF=0.5;RO=155;AO=177;PRO=0.0;PAO=0.0;QR=5982;QA=6707;PQR=0.0;PQA=0.0;SRF=92;SRR=63;SAF=111;SAR=66;SRP=14.7923;SAP=27.8534;AB=0.533133;ABP=6.17594;RUN=1;RPP=45.7159;RPPR=26.5603;RPL=59.0;RPR=118.0;EPP=13.3279;EPPR=14.7923;DPRA=0.0;ODDS=264.993;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988701;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.525;Dels=0.0;FS=0.8055;HaplotypeScore=5.889;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2735;QD=18.57;ReadPosRankSum=0.0695;SOR=0.818;ClippingRankSum=-1.758	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:42:1631:42:1558:-117.505,0.0,-124.073:42:50:84:42,42:1452,0,1454:1:.:1:.:.:.:-0.000759707	0/1:129.501:248:113:4351:135:5149:-395.995,0.0,-324.223:135:54:248:113,135:5036,0,4132:.:1:1:.:.:.:-0.0132393
chr12	18008222	.	T	C	4374.72	REJECT	NS=2;DP=198;DPB=225.0;AC=3;AN=4;AF=0.75;RO=65;AO=159;PRO=0.0;PAO=0.0;QR=2488;QA=6029;PQR=0.0;PQA=0.0;SRF=44;SRR=21;SAF=101;SAR=58;SRP=20.6827;SAP=28.2622;AB=0.616279;ABP=23.21;RUN=1;RPP=121.13;RPPR=59.1679;RPL=33.0;RPR=126.0;EPP=3.6795;EPPR=3.31097;DPRA=0.0;ODDS=34.0379;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987421;PAIREDR=0.969231;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.775;Dels=0.0;FS=1.9125;HaplotypeScore=4.9293;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.963;QD=28.865;ReadPosRankSum=0.043;SOR=1.1135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.2:53:0:0:53:1992:-179.461,-14.3565,0.0:53:100:53:0,53:2131,158,0:1:.:1:.:.:.:-0.000759707	0/1:129.501:172:65:2488:106:4037:-316.895,0.0,-177.542:106:62:171:65,106:4020,0,2272:.:1:1:.:.:.:-0.0132393
chr12	22507319	.	G	A	2098.225	REJECT	NS=2;DP=359;DPB=416.0;AC=2;AN=4;AF=0.5;RO=312;AO=104;PRO=0.0;PAO=0.0;QR=11819;QA=3865;PQR=0.0;PQA=0.0;SRF=148;SRR=164;SAF=46;SAR=58;SRP=4.79202;SAP=6.01695;AB=0.25;ABP=228.843;RUN=1;RPP=5.09825;RPPR=3.12166;RPL=57.0;RPR=47.0;EPP=3.09382;EPPR=19.0458;DPRA=0.0;ODDS=154.903;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980769;PAIREDR=0.996795;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7685;Dels=0.0;FS=0.77;HaplotypeScore=7.7066;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3825;QD=9.915;ReadPosRankSum=1.092;SOR=0.832;ClippingRankSum=-1.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.175:111:54:2052:59:2205:-167.838,0.0,-154.089:58:52:111:53,57:1931,0,1813:1:.:1:.:.:.:-0.000759707	0/1:120.175:302:258:9767:45:1660:-67.6678,0.0,-796.486:44:15:302:258,44:930,0,10005:.:1:1:.:.:.:-0.0132393
chr12	25368462	.	C	T	13856.95	REJECT	NS=2;DP=368;DPB=417.0;AC=4;AN=4;AF=1.0;RO=0;AO=417;PRO=0.0;PAO=0.0;QR=0;QA=15865;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=197;SRP=0.0;SAP=5.765;AB=0.0;ABP=0.0;RUN=1;RPP=5.30675;RPPR=0.0;RPL=219.0;RPR=198.0;EPP=16.5547;EPPR=0.0;DPRA=0.0;ODDS=64.836;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990408;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8487;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.755;SOR=0.7775	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:97:3691:-332.245,-26.2828,0.0:95:100:95:0,94:3868,282,0:1:.:1:.:.:.:-0.000759707	1/1:129.501:319:0:0:320:12174:-1094.95,-86.6206,0.0:319:100:319:0,319:13531,939,0:.:1:1:.:.:.:-0.0132393
chr12	25498629	.	C	T	14418.0	REJECT	NS=2;DP=381;DPB=427.0;AC=4;AN=4;AF=1.0;RO=0;AO=427;PRO=0.0;PAO=0.0;QR=0;QA=16258;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=188;SAR=239;SRP=0.0;SAP=16.2375;AB=0.0;ABP=0.0;RUN=1;RPP=3.25949;RPPR=0.0;RPL=217.0;RPR=210.0;EPP=54.8866;EPPR=0.0;DPRA=0.0;ODDS=61.0505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997658;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8487;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.245;SOR=1.1185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.695:90:0:0:91:3429:-308.665,-24.6388,0.0:90:100:90:0,90:3561,269,0:1:.:1:.:.:.:-0.000759707	1/1:124.695:336:0:0:336:12829:-1153.87,-90.976,0.0:336:100:336:0,336:14347,996,0:.:1:1:.:.:.:-0.0132393
chr12	25499342	.	T	C	14105.9	REJECT	NS=2;DP=371;DPB=419.0;AC=4;AN=4;AF=1.0;RO=2;AO=417;PRO=0.0;PAO=0.0;QR=80;QA=16147;PQR=0.0;PQA=0.0;SRF=1;SRR=1;SAF=204;SAR=213;SRP=3.0103;SAP=3.4321;AB=0.0;ABP=0.0;RUN=1;RPP=3.26546;RPPR=7.35324;RPL=205.0;RPR=212.0;EPP=4.18196;EPPR=3.0103;DPRA=0.0;ODDS=62.9714;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992806;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.437;Dels=0.0;FS=0.0;HaplotypeScore=3.8378;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.065;QD=27.67;ReadPosRankSum=-0.991;SOR=0.793	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.7985:93:0:0:94:3668:-330.153,-25.4731,0.0:93:100:93:0,92:3921,276,0:1:.:1:.:.:.:-0.000759707	1/1:126.7985:324:2:80:323:12479:-1115.15,-80.8114,0.0:322:99:324:2,321:13819,874,0:.:1:1:.:.:.:-0.0132393
chr12	25501790	.	T	C	4109.57	REJECT	NS=1;DP=130;DPB=130.0;AC=2;AN=4;AF=1.0;RO=0;AO=129;PRO=0.0;PAO=0.0;QR=0;QA=4651;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=77;SAR=52;SRP=0.0;SAP=13.531;AB=0.0;ABP=0.0;RUN=1;RPP=7.87507;RPPR=0.0;RPL=56.0;RPR=73.0;EPP=28.6135;EPPR=0.0;DPRA=0.0;ODDS=84.9341;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.984496;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=59.87;QD=32.94;SOR=1.071	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:126:0:0:129:4651:-418.535,-34.8864,0.0:125:100:125:0,122:4571,365,0:1:.:1:.:.:.:-0.000759707	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0132393
chr12	39018673	.	C	T	2488.1	PASS	SOMATIC;NS=2;DP=387;DPB=387.0;AC=1;AN=3;AF=0.25;RO=290;AO=97;PRO=0.0;PAO=0.0;QR=10966;QA=3723;PQR=0.0;PQA=0.0;SRF=172;SRR=118;SAF=56;SAR=41;SRP=24.8448;SAP=8.04722;AB=0.327703;ABP=79.3346;RUN=1;RPP=4.82359;RPPR=8.88076;RPL=44.0;RPR=53.0;EPP=3.56996;EPPR=4.08855;DPRA=3.25275;ODDS=57.7081;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.986207;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=4.824;Dels=0.0;FS=1.519;HaplotypeScore=9.7143;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.078;QD=10.96;ReadPosRankSum=-0.936;SOR=0.579	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:91:3393:0:0:0.0,-24.6364,-305.422:0:0:90:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:295:199:7573:97:3723:-254.698,0.0,-601.037:97:33:295:190,94:38.0:0.332:2:3272,0,7541:.:1:1:.:.:1:-0.0302105
chr12	40619082	.	G	A	13160.3	REJECT	NS=2;DP=346;DPB=398.0;AC=4;AN=4;AF=1.0;RO=0;AO=397;PRO=0.0;PAO=0.0;QR=0;QA=15266;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=155;SAR=242;SRP=0.0;SAP=44.4105;AB=0.0;ABP=0.0;RUN=1;RPP=42.5289;RPPR=0.0;RPL=241.0;RPR=156.0;EPP=6.42886;EPPR=0.0;DPRA=0.0;ODDS=66.6601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987406;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7731;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.805;SOR=1.3225	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:100:3814:-343.276,-27.075,0.0:99:100:99:0,99:4248,297,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:295:0:0:297:11452:-1030.08,-80.4534,0.0:295:100:295:0,294:12742,882,0:.:1:1:.:.:.:-0.0302105
chr12	40631791	.	T	C	6419.280000000001	REJECT	NS=2;DP=299;DPB=337.0;AC=3;AN=4;AF=0.75;RO=107;AO=230;PRO=0.0;PAO=0.0;QR=4096;QA=8771;PQR=0.0;PQA=0.0;SRF=72;SRR=35;SAF=162;SAR=68;SRP=30.793;SAP=86.4326;AB=0.591603;ABP=22.106;RUN=1;RPP=6.06924;RPPR=6.44001;RPL=106.0;RPR=124.0;EPP=6.06924;EPPR=17.8047;DPRA=0.0;ODDS=47.7762;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.447;Dels=0.0;FS=1.162;HaplotypeScore=9.6651;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.484;QD=28.375;ReadPosRankSum=0.886;SOR=1.3105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.298:74:0:0:75:2872:-258.599,-20.323,0.0:74:100:74:0,74:3157,222,0:1:.:1:.:.:.:-0.00355946	0/1:120.298:262:107:4096:155:5899:-459.655,0.0,-297.515:155:59:262:107,155:5833,0,3791:.:1:1:.:.:.:-0.0302105
chr12	40645257	.	C	A	1323.595	REJECT	NS=2;DP=354;DPB=407.0;AC=2;AN=4;AF=0.5;RO=331;AO=76;PRO=0.0;PAO=0.0;QR=12513;QA=2779;PQR=0.0;PQA=0.0;SRF=173;SRR=158;SAF=32;SAR=44;SRP=4.48638;SAP=7.12467;AB=0.186732;ABP=349.939;RUN=1;RPP=4.03889;RPPR=10.1545;RPL=35.0;RPR=41.0;EPP=3.12459;EPPR=4.48638;DPRA=0.0;ODDS=72.3044;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.19;Dels=0.0;FS=5.3795;HaplotypeScore=7.7983;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1875;QD=7.025;ReadPosRankSum=0.316;SOR=1.064;ClippingRankSum=-0.227	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3145:105:64:2411:41:1511:-107.569,0.0,-188.569:41:39:105:64,41:1336,0,2108:1:.:1:.:.:.:-0.00355946	0/1:118.3145:302:267:10102:35:1268:-32.3141,0.0,-826.883:35:12:302:267,35:511,0,10348:.:1:1:.:.:.:-0.0302105
chr12	40657700	.	C	G	4763.27	REJECT	NS=2;DP=340;DPB=393.0;AC=2;AN=4;AF=0.5;RO=208;AO=185;PRO=0.0;PAO=0.0;QR=7764;QA=6975;PQR=0.0;PQA=0.0;SRF=82;SRR=126;SAF=66;SAR=119;SRP=23.2217;SAP=35.9815;AB=0.470738;ABP=5.93322;RUN=1;RPP=8.18662;RPPR=4.05428;RPL=103.0;RPR=82.0;EPP=10.3464;EPPR=4.05428;DPRA=0.0;ODDS=304.724;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995192;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.721;Dels=0.0;FS=2.8875;HaplotypeScore=6.9268;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0105;QD=17.47;ReadPosRankSum=0.217;SOR=1.01;ClippingRankSum=-0.258	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:49:1803:57:2192:-168.593,0.0,-133.566:56:54:105:48,56:2060,0,1563:1:.:1:.:.:.:-0.00355946	0/1:129.501:287:159:5961:128:4783:-352.555,0.0,-458.497:128:45:287:159,128:4449,0,5733:.:1:1:.:.:.:-0.0302105
chr12	40681352	.	T	TA	2329.77	REJECT	NS=2;DP=252;DPB=296.714;AC=2;AN=4;AF=0.5;RO=144;AO=108;PRO=19.3333;PAO=19.3333;QR=5487;QA=3867;PQR=704.0;PQA=683.5;SRF=32;SRR=112;SAF=24;SAR=84;SRP=99.5202;SAP=75.3927;AB=0.409091;ABP=21.9613;RUN=1;RPP=21.1059;RPPR=68.6973;RPL=69.0;RPR=39.0;EPP=6.95112;EPPR=3.07062;DPRA=0.0;ODDS=159.783;GTI=0;TYPE=ins;CIGAR=1M1I13M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.728;FS=3.722;MLEAC=1;MLEAF=0.5;MQ=60.365;MQRankSum=-0.4935;QD=9.145;RPA=9,10;RU=A;ReadPosRankSum=0.27;SOR=0.488;STR;ClippingRankSum=-1.127	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:63:25:953:34:1165:-97.8467,0.0,-75.1809:36:57:63:25,38:813,0,528:1:.:1:.:.:.:-0.00355946	0/1:129.501:221:119:4534:74:2702:-209.877,0.0,-369.784:79:38:204:125,85:1774,0,3174:.:1:1:.:.:.:-0.0302105
chr12	40681352	.	T	TAA	2922.81	REJECT	NS=2;DP=264;DPB=296.714;AC=2;AN=2;AF=0.0;RO=144;AO=9;PRO=19.3333;PAO=13.3333;QR=5487;QA=300;PQR=704.0;PQA=475.5;SRF=32;SRR=112;SAF=6;SAR=3;SRP=99.5202;SAP=5.18177;AB=0.0340909;ABP=500.771;RUN=1;RPP=14.8328;RPPR=68.6973;RPL=8.0;RPR=1.0;EPP=3.25157;EPPR=3.07062;DPRA=0.0;ODDS=159.783;GTI=0;TYPE=ins;CIGAR=1M2I13M;NUMALT=2;MEANALT=3.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:63:25:953:4:136:-97.8467,-94.0095,-178.104:4:6:63:.:.:1:.:.:.:-0.00355946	./1:160.002:201:119:4534:5:164:-209.877,-217.295,-606.549:5:3:198:.:.:1:.:.:.:-0.0302105
chr12	40702911	.	G	A	5749.085	REJECT	NS=2;DP=340;DPB=388.0;AC=2;AN=4;AF=0.5;RO=178;AO=210;PRO=0.0;PAO=0.0;QR=6687;QA=7974;PQR=0.0;PQA=0.0;SRF=111;SRR=67;SAF=150;SAR=60;SRP=26.6281;SAP=86.7671;AB=0.541237;ABP=8.7412;RUN=1;RPP=30.9706;RPPR=15.5024;RPL=79.0;RPR=131.0;EPP=3.17575;EPPR=3.0591;DPRA=0.0;ODDS=224.259;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9905;MQMR=60.0;PAIRED=0.995238;PAIREDR=0.983146;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8705;Dels=0.0;FS=6.7955;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.22;QD=20.875;ReadPosRankSum=0.0135;SOR=1.407;ClippingRankSum=0.753	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:36:1376:57:2174:-170.503,0.0,-98.6708:56:61:91:34,56:2104,0,1142:1:.:1:.:.:.:-0.00355946	0/1:129.501:294:142:5311:153:5800:-441.855,0.0,-397.857:153:52:294:140,153:5578,0,4933:.:1:1:.:.:.:-0.0302105
chr12	40702987	.	G	A	6380.790000000001	REJECT	NS=2;DP=367;DPB=425.0;AC=2;AN=4;AF=0.5;RO=198;AO=227;PRO=0.0;PAO=0.0;QR=7343;QA=8763;PQR=0.0;PQA=0.0;SRF=81;SRR=117;SAF=95;SAR=132;SRP=17.2236;SAP=16.1061;AB=0.534118;ABP=7.30726;RUN=1;RPP=8.07069;RPPR=5.15984;RPL=125.0;RPR=102.0;EPP=31.9473;EPPR=20.5576;DPRA=0.0;ODDS=307.386;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982379;PAIREDR=0.989899;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.4685;Dels=0.0;FS=3.1105;HaplotypeScore=3.9636;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.823;QD=19.13;ReadPosRankSum=-0.093;SOR=0.5875;ClippingRankSum=1.272	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:51:1849:63:2431:-187.928,0.0,-135.531:62:55:113:51,62:2133,0,1572:1:.:1:.:.:.:-0.00355946	0/1:129.501:310:147:5494:164:6332:-485.307,0.0,-409.957:164:53:310:146,164:6166,0,5155:.:1:1:.:.:.:-0.0302105
chr12	40713834	.	C	A	12616.349999999999	REJECT	NS=2;DP=337;DPB=388.0;AC=4;AN=4;AF=1.0;RO=0;AO=388;PRO=0.0;PAO=0.0;QR=0;QA=14707;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=219;SAR=169;SRP=0.0;SAP=17.0017;AB=0.0;ABP=0.0;RUN=1;RPP=5.71904;RPPR=0.0;RPL=183.0;RPR=205.0;EPP=7.39802;EPPR=0.0;DPRA=0.0;ODDS=67.3541;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987113;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.215;SOR=0.9485	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.18:99:0:0:101:3881:-349.337,-27.3764,0.0:99:100:99:0,98:3917,294,0:1:.:1:.:.:.:-0.00355946	1/1:125.18:287:0:0:287:10826:-973.74,-77.6699,0.0:287:100:287:0,287:12093,843,0:.:1:1:.:.:.:-0.0302105
chr12	40713873	.	A	G	5944.47	REJECT	NS=2;DP=370;DPB=427.0;AC=2;AN=4;AF=0.5;RO=215;AO=211;PRO=0.0;PAO=0.0;QR=8214;QA=8164;PQR=0.0;PQA=0.0;SRF=117;SRR=98;SAF=109;SAR=102;SRP=6.65635;SAP=3.51458;AB=0.494145;ABP=3.13744;RUN=1;RPP=3.51458;RPPR=3.50519;RPL=102.0;RPR=109.0;EPP=3.51458;EPPR=6.65635;DPRA=0.0;ODDS=376.81;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995261;PAIREDR=0.990698;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5225;Dels=0.0;FS=4.25;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2085;QD=17.73;ReadPosRankSum=-0.8665;SOR=0.7585;ClippingRankSum=-0.16	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:57:2191:56:2167:-164.408,0.0,-166.559:56:50:112:56,56:1955,0,1979:1:.:1:.:.:.:-0.00355946	0/1:129.501:313:158:6023:155:5997:-454.643,0.0,-456.956:155:50:313:158,155:5789,0,5767:.:1:1:.:.:.:-0.0302105
chr12	40715013	.	T	A	3446.705	REJECT	NS=2;DP=215;DPB=243.0;AC=2;AN=4;AF=0.5;RO=121;AO=122;PRO=0.0;PAO=0.0;QR=4643;QA=4765;PQR=0.0;PQA=0.0;SRF=43;SRR=78;SAF=47;SAR=75;SRP=24.9942;SAP=16.9647;AB=0.502058;ABP=3.01924;RUN=1;RPP=67.0865;RPPR=57.2971;RPL=91.0;RPR=31.0;EPP=4.7902;EPPR=3.02825;DPRA=0.0;ODDS=146.51;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.061;Dels=0.0;FS=5.3715;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.357;QD=18.53;ReadPosRankSum=-0.7285;SOR=0.445;ClippingRankSum=-0.709	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:54:25:909:31:1208:-93.6637,0.0,-66.6973:30:56:54:23,30:1028,0,816:1:.:1:.:.:.:-0.00355946	0/1:129.501:187:96:3734:91:3557:-269.336,0.0,-285.247:91:49:187:96,91:3431,0,3611:.:1:1:.:.:.:-0.0302105
chr12	40716260	.	T	C	5451.575000000001	REJECT	NS=2;DP=327;DPB=372.0;AC=2;AN=4;AF=0.5;RO=178;AO=194;PRO=0.0;PAO=0.0;QR=6915;QA=7403;PQR=0.0;PQA=0.0;SRF=68;SRR=110;SAF=79;SAR=115;SRP=24.5298;SAP=17.5166;AB=0.521505;ABP=4.50465;RUN=1;RPP=10.5769;RPPR=5.40136;RPL=110.0;RPR=84.0;EPP=4.62211;EPPR=6.96287;DPRA=0.0;ODDS=273.701;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.994382;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.5375;Dels=0.0;FS=3.8275;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.968;QD=18.04;ReadPosRankSum=0.1485;SOR=0.48;ClippingRankSum=-0.132	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6825:87:41:1608:47:1780:-136.389,0.0,-120.912:46:53:87:41,46:1521,0,1503:1:.:1:.:.:.:-0.00355946	0/1:118.6825:282:137:5307:147:5623:-428.845,0.0,-400.426:146:52:282:136,145:5363,0,5089:.:1:1:.:.:.:-0.0302105
chr12	40757330	.	A	G	6534.870000000001	REJECT	NS=2;DP=409;DPB=463.0;AC=2;AN=4;AF=0.5;RO=229;AO=234;PRO=0.0;PAO=0.0;QR=8836;QA=8879;PQR=0.0;PQA=0.0;SRF=91;SRR=138;SAF=94;SAR=140;SRP=23.9569;SAP=22.6463;AB=0.5054;ABP=3.12755;RUN=1;RPP=26.2098;RPPR=20.5433;RPL=142.0;RPR=92.0;EPP=3.04742;EPPR=4.15767;DPRA=0.0;ODDS=321.478;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995726;PAIREDR=0.995633;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.621;Dels=0.0;FS=5.9065;HaplotypeScore=7.8629;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.224;QD=18.275;ReadPosRankSum=-0.6355;SOR=0.9435;ClippingRankSum=0.136	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.3215:107:49:1880:59:2168:-165.873,0.0,-139.964:58:55:107:48,58:1980,0,1684:1:.:1:.:.:.:-0.00355946	0/1:123.3215:355:180:6956:175:6711:-507.474,0.0,-529.452:175:49:355:180,175:6469,0,6696:.:1:1:.:.:.:-0.0302105
chr12	40758652	.	T	C	10782.849999999999	REJECT	NS=2;DP=287;DPB=328.0;AC=4;AN=4;AF=1.0;RO=1;AO=327;PRO=0.0;PAO=0.0;QR=16;QA=12530;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=231;SAR=96;SRP=5.18177;SAP=124.035;AB=0.0;ABP=0.0;RUN=1;RPP=7.16067;RPPR=5.18177;RPL=151.0;RPR=176.0;EPP=15.2887;EPPR=5.18177;DPRA=0.0;ODDS=54.8759;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993884;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.662;Dels=0.0;FS=0.0;HaplotypeScore=6.8311;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.049;QD=29.89;ReadPosRankSum=1.157;SOR=1.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:80:0:0:81:3115:-280.455,-21.9572,0.0:80:100:80:0,80:3294,240,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:247:1:16:246:9415:-845.475,-65.4493,0.0:246:100:247:1,246:10507,728,0:.:1:1:.:.:.:-0.0302105
chr12	48013327	.	T	C	5533.64	REJECT	NS=2;DP=317;DPB=372.0;AC=2;AN=4;AF=0.5;RO=171;AO=200;PRO=0.0;PAO=0.0;QR=6505;QA=7693;PQR=0.0;PQA=0.0;SRF=116;SRR=55;SAF=134;SAR=66;SRP=50.262;SAP=53.2147;AB=0.537634;ABP=7.58674;RUN=1;RPP=25.9845;RPPR=15.2137;RPL=77.0;RPR=123.0;EPP=22.1627;EPPR=9.7279;DPRA=0.0;ODDS=296.14;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.9085;Dels=0.0;FS=2.857;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.706;QD=20.0;ReadPosRankSum=0.1255;SOR=0.5835;ClippingRankSum=-0.97	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:47:1790:59:2247:-173.514,0.0,-132.409:58:55:105:47,58:2110,0,1582:1:.:1:.:.:.:-0.00355946	0/1:129.501:264:124:4715:141:5446:-418.107,0.0,-352.342:141:53:264:122,141:5333,0,4392:.:1:1:.:.:.:-0.0302105
chr12	48375568	.	A	G	6042.21	REJECT	NS=2;DP=407;DPB=469.0;AC=2;AN=4;AF=0.5;RO=247;AO=222;PRO=0.0;PAO=0.0;QR=9497;QA=8447;PQR=0.0;PQA=0.0;SRF=111;SRR=136;SAF=105;SAR=117;SRP=8.50492;SAP=4.41882;AB=0.473348;ABP=5.90405;RUN=1;RPP=20.2647;RPPR=3.01909;RPL=132.0;RPR=90.0;EPP=8.64439;EPPR=24.1184;DPRA=0.0;ODDS=392.975;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995495;PAIREDR=0.987854;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3535;Dels=0.0;FS=1.6615;HaplotypeScore=9.7451;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.841;QD=16.975;ReadPosRankSum=-0.2625;SOR=0.711;ClippingRankSum=0.476	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:120:60:2276:61:2331:-176.99,0.0,-172.069:60:50:120:59,60:2059,0,2044:1:.:1:.:.:.:-0.00355946	0/1:129.501:347:187:7221:161:6116:-455.822,0.0,-555.256:161:46:347:185,161:5870,0,6971:.:1:1:.:.:.:-0.0302105
chr12	48375965	.	C	T	4297.765	REJECT	NS=2;DP=277;DPB=317.0;AC=2;AN=4;AF=0.5;RO=162;AO=155;PRO=0.0;PAO=0.0;QR=6194;QA=5909;PQR=0.0;PQA=0.0;SRF=53;SRR=109;SAF=52;SAR=103;SRP=45.0457;SAP=39.449;AB=0.488959;ABP=3.34595;RUN=1;RPP=4.14507;RPPR=22.3659;RPL=82.0;RPR=73.0;EPP=10.4213;EPPR=3.22477;DPRA=0.0;ODDS=244.013;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987097;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6815;Dels=0.0;FS=0.445;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5285;QD=18.125;ReadPosRankSum=0.078;SOR=0.6335;ClippingRankSum=-0.678	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:41:1546:37:1414:-106.182,0.0,-118.059:37:47:77:40,37:1447,0,2713:1:.:1:.:.:.:-0.00355946	0/1:129.501:238:121:4648:118:4495:-339.617,0.0,-353.386:117:49:238:121,117:4270,0,4499:.:1:1:.:.:.:-0.0302105
chr12	48376291	.	G	A	7020.67	REJECT	NS=2;DP=422;DPB=485.0;AC=2;AN=4;AF=0.5;RO=230;AO=255;PRO=0.0;PAO=0.0;QR=8698;QA=9650;PQR=0.0;PQA=0.0;SRF=127;SRR=103;SAF=138;SAR=117;SRP=8.44842;SAP=6.76567;AB=0.525773;ABP=5.80859;RUN=1;RPP=4.92631;RPPR=3.95442;RPL=120.0;RPR=135.0;EPP=7.51504;EPPR=3.16136;DPRA=0.0;ODDS=335.582;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996078;PAIREDR=0.986957;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6745;Dels=0.0;FS=1.1495;HaplotypeScore=8.7765;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2455;QD=19.165;ReadPosRankSum=0.9955;SOR=0.5975;ClippingRankSum=0.089	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:53:1992:70:2604:-201.054,0.0,-145.949:70:57:123:53,70:2438,0,1722:1:.:1:.:.:.:-0.00355946	0/1:129.501:361:177:6706:185:7046:-535.725,0.0,-505.135:185:51:361:175,185:6774,0,6292:.:1:1:.:.:.:-0.0302105
chr12	48376969	.	C	A	4097.605	REJECT	NS=2;DP=261;DPB=304.0;AC=2;AN=4;AF=0.5;RO=149;AO=155;PRO=0.0;PAO=0.0;QR=5650;QA=5663;PQR=0.0;PQA=0.0;SRF=79;SRR=70;SAF=75;SAR=80;SRP=4.19076;SAP=3.36054;AB=0.509868;ABP=3.26745;RUN=1;RPP=24.3187;RPPR=35.2035;RPL=97.0;RPR=58.0;EPP=14.7923;EPPR=4.77371;DPRA=0.0;ODDS=243.181;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.6345;Dels=0.0;FS=2.7765;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.112;QD=16.9;ReadPosRankSum=1.1115;SOR=0.61;ClippingRankSum=-0.177	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7475:86:46:1719:40:1445:-106.812,0.0,-131.474:40:47:86:46,40:1351,0,1585:1:.:1:.:.:.:-0.00355946	0/1:118.7475:218:103:3931:115:4218:-320.466,0.0,-294.62:115:53:218:103,115:4043,0,3762:.:1:1:.:.:.:-0.0302105
chr12	48389023	.	C	T	5212.24	REJECT	NS=2;DP=306;DPB=350.0;AC=2;AN=4;AF=0.5;RO=165;AO=184;PRO=0.0;PAO=0.0;QR=6216;QA=7086;PQR=0.0;PQA=0.0;SRF=107;SRR=58;SAF=117;SAR=67;SRP=34.6085;SAP=32.514;AB=0.525714;ABP=5.02046;RUN=1;RPP=32.514;RPPR=6.81367;RPL=67.0;RPR=117.0;EPP=12.2627;EPPR=12.6043;DPRA=0.0;ODDS=251.751;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4985;Dels=0.0;FS=0.403;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1305;QD=18.67;ReadPosRankSum=-0.0805;SOR=0.632;ClippingRankSum=0.941	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3075:87:40:1492:47:1796:-138.13,0.0,-110.735:47:54:87:40,47:1594,0,1326:1:.:1:.:.:.:-0.00355946	0/1:118.3075:262:125:4724:137:5290:-404.901,0.0,-353.968:137:52:262:125,137:5151,0,4466:.:1:1:.:.:.:-0.0302105
chr12	48389643	.	A	C	12819.2	REJECT	NS=2;DP=335;DPB=380.0;AC=4;AN=4;AF=1.0;RO=0;AO=380;PRO=0.0;PAO=0.0;QR=0;QA=14673;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=182;SAR=198;SRP=0.0;SAP=4.47319;AB=0.0;ABP=0.0;RUN=1;RPP=3.58174;RPPR=0.0;RPL=195.0;RPR=185.0;EPP=11.2619;EPPR=0.0;DPRA=0.0;ODDS=60.4961;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.325;SOR=0.805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0795:89:0:0:90:3476:-312.923,-24.3981,0.0:89:100:89:0,88:3734,264,0:1:.:1:.:.:.:-0.00355946	1/1:126.0795:290:0:0:290:11197:-1007.13,-78.5511,0.0:290:100:290:0,290:12518,864,0:.:1:1:.:.:.:-0.0302105
chr12	48390435	.	A	T	1279.31	REJECT	NS=2;DP=267;DPB=305.0;AC=2;AN=4;AF=0.5;RO=234;AO=70;PRO=0.0;PAO=0.0;QR=8908;QA=2617;PQR=0.0;PQA=0.0;SRF=62;SRR=172;SAF=26;SAR=44;SRP=115.296;SAP=13.0611;AB=0.229508;ABP=196.841;RUN=1;RPP=30.9292;RPPR=92.1335;RPL=50.0;RPR=20.0;EPP=4.12706;EPPR=4.82914;DPRA=0.0;ODDS=119.912;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.121;Dels=0.0;FS=4.394;HaplotypeScore=6.8015;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2565;QD=9.235;ReadPosRankSum=0.702;SOR=0.377;ClippingRankSum=-0.444	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2225:74:39:1446:36:1310:-97.654,0.0,-109.888:35:47:74:39,35:1148,0,1312:1:.:1:.:.:.:-0.00355946	0/1:121.2225:229:195:7462:34:1307:-55.5517,0.0,-609.226:34:15:228:194,34:792,0,7609:.:1:1:.:.:.:-0.0302105
chr12	48393781	.	G	A	2945.89	PASS	SOMATIC;NS=2;DP=429;DPB=429.0;AC=1;AN=3;AF=0.25;RO=316;AO=112;PRO=0.0;PAO=0.0;QR=12183;QA=4343;PQR=0.0;PQA=0.0;SRF=160;SRR=156;SAF=51;SAR=61;SRP=3.12025;SAP=4.94911;AB=0.340426;ABP=75.7777;RUN=1;RPP=20.4596;RPPR=21.5915;RPL=71.0;RPR=41.0;EPP=3.32051;EPPR=18.8428;DPRA=3.29;ODDS=63.3533;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996835;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.226;Dels=0.0;FS=2.516;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.449;QD=11.75;ReadPosRankSum=0.524;SOR=0.863	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.676:96:100:3856:0:0:0.0,-27.088,-347.057:0:0:96:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:122.338:329:216:8327:112:4343:-301.809,0.0,-660.077:112:34:328:206,110:38.0:0.354:2:3905,0,8281:.:1:1:.:.:1:-0.0302105
chr12	48398002	.	G	C	2992.19	REJECT	NS=1;DP=88;DPB=88.0;AC=2;AN=4;AF=1.0;RO=0;AO=88;PRO=0.0;PAO=0.0;QR=0;QA=3385;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=38;SRP=0.0;SAP=6.56362;AB=0.0;ABP=0.0;RUN=1;RPP=22.3561;RPPR=0.0;RPL=30.0;RPR=58.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=59.5278;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.49;SOR=1.03	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.359:87:0:0:88:3385:-304.732,-23.8526,0.0:87:100:87:0,87:3679,261,0:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	48398080	.	T	A	3126.67	REJECT	NS=1;DP=93;DPB=93.0;AC=2;AN=4;AF=1.0;RO=0;AO=93;PRO=0.0;PAO=0.0;QR=0;QA=3553;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=32;SAR=61;SRP=0.0;SAP=22.6469;AB=0.0;ABP=0.0;RUN=1;RPP=3.03365;RPPR=0.0;RPL=46.0;RPR=47.0;EPP=22.6469;EPPR=0.0;DPRA=0.0;ODDS=62.674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.23;SOR=1.46	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:93:3553:-319.869,-25.219,0.0:92:100:92:0,91:3722,274,0:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	49416046	.	TC	T	2638.81	PASS	SOMATIC;NS=2;DP=474;DPB=465.5;AC=1;AN=4;AF=0.25;RO=348;AO=117;PRO=15.5;PAO=8.5;QR=13094;QA=4086;PQR=427.0;PQA=190.0;SRF=121;SRR=227;SAF=40;SAR=77;SRP=73.1214;SAP=28.4184;AB=0.327731;ABP=95.0333;RUN=1;RPP=9.71031;RPPR=3.23494;RPL=49.0;RPR=68.0;EPP=5.25601;EPPR=3.11014;DPRA=3.05128;ODDS=75.8793;GTI=0;TYPE=del;CIGAR=1M1D4M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=60.3419;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994253;technology.ILLUMINA=1.0;MQ0=0;END=49416047;HOMLEN=1;HOMSEQ=C;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-0.085;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-0.749;QD=11.01;RPA=2,1;RU=C;ReadPosRankSum=0.241;SOR=0.738;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:119:116:4367:0:0:0.0,-32.528,-405.674:0:0:118:121,0:0.14876,0.0:60.0,0.0:38.0185,0.0:0.00168067,0.0:0,0:0,0:39,82,0,0:.:.:.:0:.:0:.:-0.00355946	0/1:129.501:360:232:8727:117:4086:-272.608,0.0,-698.557:120:34:359:238,120:0.145833,0.1:60.0,60.3333:37.91,37.3649:0.00338123,0.00254022:56,20:44,20:84,156,41,79:4000,0,8963:.:1:1:1:1:.:-0.0302105
chr12	49425978	.	T	C	2719.22	PASS	SOMATIC;NS=2;DP=450;DPB=450.0;AC=1;AN=3;AF=0.25;RO=343;AO=107;PRO=0.0;PAO=0.0;QR=13181;QA=4077;PQR=0.0;PQA=0.0;SRF=160;SRR=183;SAF=50;SAR=57;SRP=6.35931;SAP=4.00471;AB=0.32622;ABP=89.0483;RUN=1;RPP=3.51765;RPPR=18.2106;RPL=56.0;RPR=51.0;EPP=8.8753;EPPR=5.80219;DPRA=2.68852;ODDS=77.1103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=0.991254;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.294;Dels=0.0;FS=0.0;HaplotypeScore=4.8897;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.039;QD=10.73;ReadPosRankSum=0.959;SOR=0.689	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.293:120:122:4697:0:0:0.0,-33.0626,-422.709:0:0:120:119,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:122.1465:327:221:8484:107:4077:-277.87,0.0,-674.27:106:33:327:216,105:38.0:0.332:2:3537,0,8526:.:1:1:.:.:1:-0.0302105
chr12	49427108	.	G	A	3885.27	REJECT	NS=2;DP=276;DPB=307.0;AC=2;AN=4;AF=0.5;RO=159;AO=147;PRO=0.0;PAO=0.0;QR=6002;QA=5313;PQR=0.0;PQA=0.0;SRF=87;SRR=72;SAF=84;SAR=63;SRP=6.08314;SAP=9.52472;AB=0.478827;ABP=4.20567;RUN=1;RPP=3.73412;RPPR=3.35173;RPL=70.0;RPR=77.0;EPP=4.20683;EPPR=3.35173;DPRA=0.0;ODDS=132.09;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993197;PAIREDR=0.993711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.568;Dels=0.0;FS=7.151;HaplotypeScore=3.8708;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0555;QD=14.725;ReadPosRankSum=-0.4325;SOR=0.589;ClippingRankSum=0.626	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8545:59:36:1329:24:822:-57.815,0.0,-103.478:23:40:58:34,23:723,0,1224:1:.:1:.:.:.:-0.00355946	0/1:118.8545:246:123:4673:123:4491:-337.401,0.0,-353.788:123:50:246:123,123:4275,0,4519:.:1:1:.:.:.:-0.0302105
chr12	49427652	.	C	T	2357.43	PASS	SOMATIC;NS=2;DP=316;DPB=316.0;AC=1;AN=3;AF=0.25;RO=226;AO=90;PRO=0.0;PAO=0.0;QR=8692;QA=3382;PQR=0.0;PQA=0.0;SRF=115;SRR=111;SAF=47;SAR=43;SRP=3.16403;SAP=3.39634;AB=0.384615;ABP=30.0702;RUN=1;RPP=5.42305;RPPR=4.89352;RPL=50.0;RPR=40.0;EPP=3.0103;EPPR=3.16403;DPRA=2.85366;ODDS=52.1928;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.5619;PAIRED=1.0;PAIREDR=0.995575;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.733;Dels=0.0;FS=0.0;HaplotypeScore=5.8041;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=0.063;QD=12.94;ReadPosRankSum=0.642;SOR=0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:81:82:3176:0:0:0.0,-22.2411,-285.962:0:0:81:81,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:234:144:5516:90:3382:-241.124,0.0,-428.244:90:38:234:141,88:37.0:0.387:2:3057,0,5452:.:1:1:.:.:1:-0.0302105
chr12	49434074	.	C	A	2475.19	PASS	SOMATIC;NS=2;DP=400;DPB=400.0;AC=1;AN=3;AF=0.25;RO=298;AO=102;PRO=0.0;PAO=0.0;QR=11435;QA=3690;PQR=0.0;PQA=0.0;SRF=149;SRR=149;SAF=47;SAR=55;SRP=3.0103;SAP=4.37279;AB=0.350515;ABP=59.491;RUN=1;RPP=3.35092;RPPR=4.43852;RPL=53.0;RPR=49.0;EPP=9.90792;EPPR=4.0596;DPRA=2.66972;ODDS=69.0317;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-4.55;Dels=0.01;FS=0.948;HaplotypeScore=7.7948;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.205;QD=11.1;ReadPosRankSum=-0.895;SOR=0.835	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:108:109:4235:0:0:0.0,-29.5541,-381.173:0:0:108:107,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:291:189:7200:102:3690:-253.559,0.0,-568.834:102:35:291:185,101:36.0:0.356:2:3281,0,7177:.:1:1:.:.:1:-0.0302105
chr12	49439659	.	C	T	8184.595	REJECT	NS=2;DP=217;DPB=246.0;AC=4;AN=4;AF=1.0;RO=0;AO=246;PRO=0.0;PAO=0.0;QR=0;QA=9413;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=166;SAR=80;SRP=0.0;SAP=68.2957;AB=0.0;ABP=0.0;RUN=1;RPP=91.2815;RPPR=0.0;RPL=73.0;RPR=173.0;EPP=3.57524;EPPR=0.0;DPRA=0.0;ODDS=39.8836;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987805;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9129;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.015;SOR=1.5165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.1505:56:0:0:57:2149:-193.587,-15.4462,0.0:56:100:56:0,56:2196,168,0:1:.:1:.:.:.:-0.00355946	1/1:127.101:189:0:0:189:7264:-653.483,-51.1841,0.0:189:100:189:0,189:8123,560,0:.:1:1:.:.:.:-0.0302105
chr12	49442356	.	C	CA	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8,0:8:0.125,0.0:60.0,0.0:35.75,0.0:0.0,0.0:0,0:0,0:7,1,0,0:0:0:8:.:.:.:.:0:.:-0.00355946	0/1:27,13:40:0.0740741,0.0:60.0,63.0769:36.1111,36.0583:0.0,0.0:94,2:5,2:22,5,12,1:13:33:40:.:.:.:.:1:.:-0.0302105
chr12	49444545	.	G	A	2953.72	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=283;AO=110;PRO=0.0;PAO=0.0;QR=10428;QA=4225;PQR=0.0;PQA=0.0;SRF=114;SRR=169;SAF=42;SAR=68;SRP=26.2213;SAP=16.355;AB=0.381944;ABP=37.8745;RUN=1;RPP=4.2737;RPPR=7.80595;RPL=59.0;RPR=51.0;EPP=3.32615;EPPR=24.5639;DPRA=2.74286;ODDS=66.3636;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=0.996466;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.132;Dels=0.0;FS=0.0;HaplotypeScore=9.6636;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.576;QD=13.61;ReadPosRankSum=0.064;SOR=0.676	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.612:104:105:3815:0:0:0.0,-28.3954,-343.356:0:0:104:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:118.806:287:178:6613:110:4225:-302.098,0.0,-516.859:110:38:287:173,105:38.0:0.374:2:3935,0,6425:.:1:1:.:.:1:-0.0302105
chr12	51181970	.	C	T	118.724	REJECT	NS=1;DP=66;DPB=90.6667;AC=1;AN=3;AF=0.0;RO=39;AO=5;PRO=16.4167;PAO=5.08333;QR=1437;QA=85;PQR=593.583;PQA=131.25;SRF=7;SRR=32;SAF=0;SAR=5;SRP=37.8095;SAP=13.8677;AB=0.0757576;ABP=106.188;RUN=1;RPP=6.91895;RPPR=19.1015;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=3.51141;DPRA=0.0;ODDS=9.74379;GTI=0;TYPE=snp;CIGAR=1X17M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=56.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:42.317:66:39:1437:5:85:-16.4193,-43.3826,-436.486:5:8:62:.:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0302105
chr12	51181970	.	C	CT	118.724	REJECT	NS=1;DP=66;DPB=90.6667;AC=1;AN=3;AF=0.0;RO=39;AO=9;PRO=16.4167;PAO=15.4167;QR=1437;QA=262;PQR=593.583;PQA=518.583;SRF=7;SRR=32;SAF=2;SAR=7;SRP=37.8095;SAP=9.04217;AB=0.136364;ABP=78.8144;RUN=1;RPP=9.04217;RPPR=19.1015;RPL=7.0;RPR=2.0;EPP=3.25157;EPPR=3.51141;DPRA=0.0;ODDS=9.74379;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:42.317:66:39:1437:9:262:-16.4193,-3.8637,-129.374:9:15:62:.:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0302105
chr12	51181970	.	CT	C	118.724	REJECT	NS=1;DP=66;DPB=90.6667;AC=1;AN=4;AF=0.5;RO=39;AO=9;PRO=16.4167;PAO=13.0833;QR=1437;QA=320;PQR=593.583;PQA=472.583;SRF=7;SRR=32;SAF=2;SAR=7;SRP=37.8095;SAP=9.04217;AB=0.136364;ABP=78.8144;RUN=1;RPP=3.25157;RPPR=19.1015;RPL=5.0;RPR=4.0;EPP=5.18177;EPPR=3.51141;DPRA=0.0;ODDS=9.74379;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:42.317:66:39:1437:9:320:-16.4193,0.0,-146.956:9:15:62:.:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0302105
chr12	51203226	.	GT	G	8193.56	REJECT	NS=2;DP=271;DPB=308.0;AC=4;AN=4;AF=1.0;RO=2;AO=302;PRO=14.5;PAO=15.5;QR=36;QA=10445;PQR=507.5;PQA=547.5;SRF=2;SRR=0;SAF=238;SAR=64;SRP=7.35324;SAP=220.704;AB=0.0;ABP=0.0;RUN=1;RPP=113.568;RPPR=7.35324;RPL=89.0;RPR=213.0;EPP=25.5591;EPPR=7.35324;DPRA=0.0;ODDS=58.8831;GTI=0;TYPE=del;CIGAR=1M1D10M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=60.1656;MQMR=50.5;PAIRED=0.993377;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.2;QD=31.49;RPA=8,7;RU=T;SOR=2.8315;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:1:23:91:3163:-282.637,-22.7945,0.0:87:99:88:0,84:2567,253,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:222:1:13:211:7282:-657.403,-56.2786,0.0:216:100:216:0,221:7413,664,0:.:1:1:.:.:.:-0.0302105
chr12	51203602	.	C	CTGTTT	967.753	REJECT	NS=2;DP=116;DPB=243.639;AC=2;AN=4;AF=0.5;RO=74;AO=40;PRO=117.0;PAO=118.0;QR=2779;QA=1456;PQR=4355.5;PQA=4392.5;SRF=19;SRR=55;SAF=8;SAR=32;SRP=41.0404;SAP=34.2795;AB=0.344828;ABP=27.2709;RUN=1;RPP=10.8276;RPPR=19.9126;RPL=26.0;RPR=14.0;EPP=3.0103;EPPR=5.94472;DPRA=0.0;ODDS=79.2076;GTI=0;TYPE=ins;CIGAR=1M5I35M;NUMALT=1;MEANALT=2.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=0.975;PAIREDR=1.0;technology.ILLUMINA=1.0;END=51203602;HOMLEN=32;HOMSEQ=TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG;SVLEN=5;SVTYPE=INS;BaseQRankSum=-0.234;FS=3.329;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-2.035;QD=7.4;ReadPosRankSum=-0.378;SOR=0.247;ClippingRankSum=-1.387	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,23:17:43:33:118.6335:31:16:611:12:439:-34.7221,0.0,-47.1557:659,0,623:1:.:1:1:.:.:-0.00355946	0/1:157,62:45:30:152:138.267:87:58:2168:28:1017:-71.0868,0.0,-174.367:.:.:.:1:1:.:.:-0.0302105
chr12	51203688	.	C	G	1650.385	REJECT	NS=2;DP=125;DPB=146.0;AC=2;AN=4;AF=0.5;RO=77;AO=69;PRO=0.0;PAO=0.0;QR=2967;QA=2525;PQR=0.0;PQA=0.0;SRF=5;SRR=72;SAF=9;SAR=60;SRP=129.604;SAP=84.8654;AB=0.472603;ABP=3.96218;RUN=1;RPP=3.79707;RPPR=3.71532;RPL=37.0;RPR=32.0;EPP=6.81824;EPPR=3.71532;DPRA=0.0;ODDS=118.29;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7101;MQMR=60.0;PAIRED=0.971014;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.001;Dels=0.0;FS=3.184;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.7525;QD=15.94;ReadPosRankSum=-0.817;SOR=0.2865;ClippingRankSum=0.098	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.101:39:20:755:20:731:-55.0624,0.0,-57.2269:20:50:39:19,20:688,0,686:1:.:1:.:.:.:-0.00355946	0/1:119.101:105:57:2212:49:1794:-132.749,0.0,-170.39:48:46:105:57,48:1599,0,2162:.:1:1:.:.:.:-0.0302105
chr12	51203953	.	A	G	1443.88	REJECT	NS=2;DP=125;DPB=145.0;AC=2;AN=4;AF=0.5;RO=81;AO=62;PRO=0.0;PAO=0.0;QR=3053;QA=2263;PQR=0.0;PQA=0.0;SRF=46;SRR=35;SAF=40;SAR=22;SRP=6.2541;SAP=14.358;AB=0.427586;ABP=9.61457;RUN=1;RPP=19.9618;RPPR=3.68051;RPL=20.0;RPR=42.0;EPP=4.27115;EPPR=6.2541;DPRA=0.0;ODDS=93.2216;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1613;MQMR=60.0;PAIRED=0.935484;PAIREDR=0.962963;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.572;Dels=0.0;FS=2.0;HaplotypeScore=14.5027;MLEAC=1;MLEAF=0.5;MQ=60.195;MQRankSum=-0.6155;QD=14.705;ReadPosRankSum=-1.0365;SOR=1.2765;ClippingRankSum=0.561	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:31:15:560:19:686:-52.6605,0.0,-41.298:17:56:30:12,15:501,0,428:1:.:1:.:.:.:-0.00355946	0/1:129.501:107:66:2493:43:1577:-112.788,0.0,-194.872:42:39:106:63,41:1344,0,2362:.:1:1:.:.:.:-0.0302105
chr12	51204002	.	C	CT	164.392	REJECT	NS=2;DP=34;DPB=70.4;AC=2;AN=4;AF=0.5;RO=13;AO=4;PRO=20.7667;PAO=20.7667;QR=441;QA=121;PQR=731.05;PQA=743.05;SRF=8;SRR=5;SAF=2;SAR=2;SRP=4.51363;SAP=3.0103;AB=0.117647;ABP=46.1843;RUN=1;RPP=5.18177;RPPR=16.5402;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=11.1951;DPRA=0.0;ODDS=15.6924;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=4;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=58.4615;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.361;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.361;QD=3.99;ReadPosRankSum=-1.307;SOR=0.941;ClippingRankSum=-1.307	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61.5105:9:2:72:2:68:-10.9328,0.0,-7.58846:3:44:7:4,5:109,0,55:1:.:1:.:.:.:-0.00355946	0/1:85.8442:25:11:369:2:53:-9.43748,0.0,-40.4029:2:10:20:.:.:.:.:1:.:.:.:-0.0302105
chr12	51204002	.	CT	C	164.392	REJECT	NS=2;DP=34;DPB=70.4;AC=2;AN=2;AF=0.0;RO=13;AO=4;PRO=20.7667;PAO=11.7667;QR=441;QA=134;PQR=731.05;PQA=416.05;SRF=8;SRR=5;SAF=3;SAR=1;SRP=4.51363;SAP=5.18177;AB=0.117647;ABP=46.1843;RUN=1;RPP=11.6962;RPPR=16.5402;RPL=4.0;RPR=0.0;EPP=5.18177;EPPR=11.1951;DPRA=0.0;ODDS=15.6924;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=4;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=58.4615;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:68.021:9:2:72:1:39:-10.9328,-13.3955,-74.1832:1:17:6:.:.:1:.:.:.:-0.00355946	./1:85.8442:25:11:369:3:95:-9.43748,-10.6402,-103.452:3:15:20:.:.:1:.:.:.:-0.0302105
chr12	51204002	.	CTTT	C	164.392	REJECT	NS=2;DP=34;DPB=70.4;AC=2;AN=2;AF=0.0;RO=13;AO=3;PRO=20.7667;PAO=10.1;QR=441;QA=86;PQR=731.05;PQA=354.8;SRF=8;SRR=5;SAF=1;SAR=2;SRP=4.51363;SAP=3.73412;AB=0.0882353;ABP=53.0819;RUN=1;RPP=9.52472;RPPR=16.5402;RPL=3.0;RPR=0.0;EPP=3.73412;EPPR=11.1951;DPRA=0.0;ODDS=15.6924;GTI=0;TYPE=del;CIGAR=1M3D21M;NUMALT=4;MEANALT=7.5;LEN=3;MQM=60.0;MQMR=58.4615;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:68.021:9:2:72:1:34:-10.9328,-15.7513,-99.0352:1:17:6:.:.:1:.:.:.:-0.00355946	./1:85.8442:25:11:369:2:52:-9.43748,-18.3062,-156.138:2:10:20:.:.:1:.:.:.:-0.0302105
chr12	51204018	.	TG	T	164.392	REJECT	NS=2;DP=34;DPB=70.4;AC=2;AN=2;AF=0.0;RO=13;AO=2;PRO=20.7667;PAO=13.6;QR=441;QA=16;PQR=731.05;PQA=488.05;SRF=8;SRR=5;SAF=2;SAR=0;SRP=4.51363;SAP=7.35324;AB=0.08;ABP=41.3151;RUN=1;RPP=7.35324;RPPR=16.5402;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=11.1951;DPRA=0.0;ODDS=15.6924;GTI=0;TYPE=del;CIGAR=17M1D7M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=58.4615;PAIRED=0.5;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:68.021:9:2:72:0:0:-10.9328,-12.566,-30.7301:0:0:6:.:.:1:.:.:.:-0.00355946	./1:85.8442:25:11:369:2:16:-9.43748,-19.9137,-128.257:2:10:20:.:.:1:.:.:.:-0.0302105
chr12	51204149	.	T	C	2483.65	REJECT	NS=2;DP=77;DPB=91.0;AC=4;AN=4;AF=1.0;RO=0;AO=91;PRO=0.0;PAO=0.0;QR=0;QA=3082;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=50;SAR=41;SRP=0.0;SAP=4.94315;AB=0.0;ABP=0.0;RUN=1;RPP=3.03416;RPPR=0.0;RPL=45.0;RPR=46.0;EPP=20.4059;EPPR=0.0;DPRA=0.0;ODDS=20.5085;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.2308;MQMR=0.0;PAIRED=0.956044;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=59.49;QD=33.045;SOR=1.013	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:79.53365:25:0:0:26:890:-79.3197,-7.03167,0.0:25:100:25:0,24:879,70,0:1:.:1:.:.:.:-0.00355946	1/1:125.861:64:0:0:65:2192:-196.71,-17.5572,0.0:64:100:64:0,64:2287,169,0:.:1:1:.:.:.:-0.0302105
chr12	51204295	.	C	T	2989.275	REJECT	NS=2;DP=175;DPB=201.0;AC=2;AN=4;AF=0.5;RO=94;AO=107;PRO=0.0;PAO=0.0;QR=3604;QA=4074;PQR=0.0;PQA=0.0;SRF=71;SRR=23;SAF=81;SAR=26;SRP=56.2345;SAP=64.4001;AB=0.532338;ABP=4.83607;RUN=1;RPP=5.46589;RPPR=18.6264;RPL=48.0;RPR=59.0;EPP=6.44001;EPPR=8.9241;DPRA=0.0;ODDS=156.132;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.4574;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0285;Dels=0.0;FS=1.662;HaplotypeScore=6.3279;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.1915;QD=17.965;ReadPosRankSum=1.0395;SOR=0.618;ClippingRankSum=0.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2165:50:25:938:26:967:-73.3152,0.0,-70.694:25:50:50:25,25:847,0,898:1:.:1:.:.:.:-0.00355946	0/1:120.2165:150:69:2666:81:3107:-238.966,0.0,-196.555:81:54:150:69,81:3010,0,2509:.:1:1:.:.:.:-0.0302105
chr12	51205066	.	CA	TT	6859.4	REJECT	NS=2;DP=481;DPB=554.0;AC=2;AN=4;AF=0.5;RO=298;AO=252;PRO=2.0;PAO=4.0;QR=11429;QA=9571;PQR=76.0;PQA=149.0;SRF=156;SRR=142;SAF=116;SAR=136;SRP=4.43852;SAP=6.45708;AB=0.45735;ABP=11.7159;RUN=1;RPP=3.04477;RPPR=3.47666;RPL=125.0;RPR=127.0;EPP=5.80219;EPPR=3.0103;DPRA=0.0;ODDS=446.256;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989933;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=-0.7035;Dels=0.0;FS=4.9415;HaplotypeScore=6.8322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.338;QD=18.31;ReadPosRankSum=2.092;SOR=0.763;ClippingRankSum=1.379	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:140:68:2545:71:2704:-205.396,0.0,-194.33:73:52:139:65,75:2950,0,4304:1:.:1:.:.:.:-0.00355946	0/1:129.501:411:230:8884:181:6867:-518.331,0.0,-689.975:182:44:411:229,183:6578,0,8713:.:1:1:.:.:.:-0.0302105
chr12	51205306	.	T	C	6842.705	REJECT	NS=2;DP=193;DPB=230.0;AC=4;AN=4;AF=1.0;RO=1;AO=229;PRO=0.0;PAO=0.0;QR=16;QA=8367;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=83;SAR=146;SRP=5.18177;SAP=40.646;AB=0.0;ABP=0.0;RUN=1;RPP=3.09564;RPPR=5.18177;RPL=116.0;RPR=113.0;EPP=10.985;EPPR=5.18177;DPRA=0.0;ODDS=48.9814;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995633;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.577;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.711;QD=31.73;ReadPosRankSum=-0.577;SOR=1.373	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:70:0:0:73:2632:-236.651,-19.3973,0.0:70:100:70:0,68:2780,204,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:156:1:16:156:5735:-514.545,-41.0163,0.0:155:99:156:1,155:6277,442,0:.:1:1:.:.:.:-0.0302105
chr12	51205413	.	G	A	306.725	REJECT	NS=2;DP=93;DPB=193.846;AC=2;AN=2;AF=0.0;RO=30;AO=11;PRO=60.25;PAO=23.25;QR=1006;QA=286;PQR=2149.93;PQA=788.1;SRF=24;SRR=6;SAF=1;SAR=10;SRP=26.4622;SAP=19.0002;AB=0.11828;ABP=120.713;RUN=1;RPP=3.20771;RPPR=10.2485;RPL=5.0;RPR=6.0;EPP=3.20771;EPPR=5.61607;DPRA=0.0;ODDS=0.230029;GTI=0;TYPE=snp;CIGAR=1X25M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=56.9091;MQMR=59.3;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.52945:24:9:306:3:68:-4.56416,-11.1973,-169.823:3:16:19:.:.:1:.:.:.:-0.00355946	./1:160.002:69:21:700:8:218:-33.0682,-61.0016,-586.37:8:15:53:.:.:1:.:.:.:-0.0302105
chr12	51205413	.	G	GA	306.725	REJECT	NS=2;DP=93;DPB=193.846;AC=2;AN=3;AF=0.25;RO=30;AO=17;PRO=60.25;PAO=56.25;QR=1006;QA=517;PQR=2149.93;PQA=2000.93;SRF=24;SRR=6;SAF=14;SAR=3;SRP=26.4622;SAP=18.4661;AB=0.182796;ABP=84.2887;RUN=1;RPP=3.13803;RPPR=10.2485;RPL=9.0;RPR=8.0;EPP=6.20364;EPPR=5.61607;DPRA=0.0;ODDS=0.230029;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=55.4118;MQMR=59.3;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.467;FS=7.692;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=-0.017;QD=1.21;RPA=19,20;RU=A;ReadPosRankSum=1.055;SOR=0.199;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.52945:24:9:306:3:85:-4.56416,-0.971754,-34.1257:3:16:19:.:.:.:.:1:.:.:.:-0.00355946	0/1:129.501:104:21:700:14:432:-33.0682,0.0,-61.4072:20:33:60:41,27:210,0,394:.:1:1:.:.:.:-0.0302105
chr12	51205413	.	G	AA	306.725	REJECT	NS=2;DP=93;DPB=193.846;AC=2;AN=2;AF=0.0;RO=30;AO=4;PRO=60.25;PAO=23.25;QR=1006;QA=64;PQR=2149.93;PQA=788.1;SRF=24;SRR=6;SAF=0;SAR=4;SRP=26.4622;SAP=11.6962;AB=0.057971;ABP=120.112;RUN=1;RPP=5.18177;RPPR=10.2485;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=5.61607;DPRA=0.0;ODDS=0.230029;GTI=0;TYPE=complex;CIGAR=1X1I25M;NUMALT=4;MEANALT=16.0;LEN=27;MQM=70.0;MQMR=59.3;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.52945:24:9:306:0:0:-4.56416,-16.2409,-175.648:0:0:19:.:.:1:.:.:.:-0.00355946	./1:160.002:69:21:700:4:64:-33.0682,-73.7524,-600.21:4:8:53:.:.:1:.:.:.:-0.0302105
chr12	51205413	.	GA	G	306.725	REJECT	NS=2;DP=93;DPB=193.846;AC=2;AN=3;AF=0.25;RO=30;AO=10;PRO=60.25;PAO=36.0;QR=1006;QA=324;PQR=2149.93;PQA=1266.93;SRF=24;SRR=6;SAF=8;SAR=2;SRP=26.4622;SAP=10.8276;AB=0.107527;ABP=127.438;RUN=1;RPP=3.87889;RPPR=10.2485;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=5.61607;DPRA=0.0;ODDS=0.230029;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=59.8;MQMR=59.3;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3.52945:24:9:306:4:147:-4.56416,0.0,-79.867:4:21:19:.:.:1:.:.:.:-0.00355946	./1:160.002:69:21:700:6:177:-33.0682,-39.7252,-296.233:6:11:53:.:.:1:.:.:.:-0.0302105
chr12	51207414	.	T	C	1014.52	REJECT	NS=2;DP=70;DPB=80.0;AC=2;AN=4;AF=0.5;RO=42;AO=38;PRO=0.0;PAO=0.0;QR=1576;QA=1455;PQR=0.0;PQA=0.0;SRF=22;SRR=20;SAF=13;SAR=25;SRP=3.21711;SAP=11.239;AB=0.475;ABP=3.44459;RUN=1;RPP=6.66752;RPPR=4.87156;RPL=23.0;RPR=15.0;EPP=21.525;EPPR=8.18047;DPRA=0.0;ODDS=54.5253;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973684;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.425;Dels=0.0;FS=4.497;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.516;QD=16.37;ReadPosRankSum=0.762;SOR=1.06;ClippingRankSum=-0.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2595:19:10:338:9:348:-26.3084,0.0,-25.4026:9:47:19:10,9:334,0,317:1:.:1:.:.:.:-0.00355946	0/1:121.2595:61:32:1238:29:1107:-83.1644,0.0,-94.9781:29:48:61:32,29:1044,0,1210:.:1:1:.:.:.:-0.0302105
chr12	51207603	.	GA	G	4234.37	REJECT	NS=2;DP=223;DPB=293.2;AC=2;AN=4;AF=0.5;RO=28;AO=178;PRO=36.5833;PAO=42.5833;QR=1039;QA=6029;PQR=1251.25;PQA=1457.25;SRF=18;SRR=10;SAF=145;SAR=33;SRP=7.97367;SAP=156.038;AB=0.754237;ABP=135.507;RUN=1;RPP=93.2362;RPPR=28.1373;RPL=46.0;RPR=132.0;EPP=10.0371;EPPR=3.32051;DPRA=0.0;ODDS=20.9675;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.2247;MQMR=60.0;PAIRED=0.994382;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.9195;FS=9.1665;MLEAC=1;MLEAF=0.5;MQ=60.545;MQRankSum=-0.6725;QD=16.91;RPA=12,11;RU=A;ReadPosRankSum=1.0095;SOR=2.8545;STR;ClippingRankSum=0.669	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49.0299:51:7:258:34:1176:-104.592,0.0,-11.0954:40:81:49:6,47:991,0,7:1:.:1:.:.:.:-0.00355946	0/1:100.355:198:21:781:144:4853:-404.345,0.0,-30.5707:155:84:183:24,166:3741,0,66:.:1:1:.:.:.:-0.0302105
chr12	51207603	.	GAA	G	4765.01	REJECT	NS=2;DP=236;DPB=293.2;AC=2;AN=2;AF=0.0;RO=28;AO=13;PRO=36.5833;PAO=35.0833;QR=1039;QA=496;PQR=1251.25;PQA=1201.75;SRF=18;SRR=10;SAF=9;SAR=4;SRP=7.97367;SAP=7.18621;AB=0.0550847;ABP=408.781;RUN=1;RPP=16.5402;RPPR=28.1373;RPL=2.0;RPR=11.0;EPP=3.17734;EPPR=3.32051;DPRA=0.0;ODDS=20.9675;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:91.0598:49:7:258:2:79:-104.592,-99.9207,-120.714:2:4:46:.:.:1:.:.:.:-0.00355946	./1:134.71:187:21:781:11:417:-404.345,-369.311,-466.525:11:6:177:.:.:1:.:.:.:-0.0302105
chr12	51207603	.	GAAA	G	4765.01	REJECT	NS=2;DP=236;DPB=293.2;AC=2;AN=2;AF=0.0;RO=28;AO=4;PRO=36.5833;PAO=28.75;QR=1039;QA=155;PQR=1251.25;PQA=963.75;SRF=18;SRR=10;SAF=3;SAR=1;SRP=7.97367;SAP=5.18177;AB=0.0169492;ABP=481.323;RUN=1;RPP=5.18177;RPPR=28.1373;RPL=1.0;RPR=3.0;EPP=3.0103;EPPR=3.32051;DPRA=0.0;ODDS=20.9675;GTI=0;TYPE=del;CIGAR=1M3D16M;NUMALT=3;MEANALT=9.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:91.0598:49:7:258:3:116:-104.592,-100.927,-167.759:3:7:46:.:.:1:.:.:.:-0.00355946	./1:134.71:187:21:781:1:39:-404.345,-414.113,-560.182:1:1:177:.:.:1:.:.:.:-0.0302105
chr12	51207704	.	A	G	7102.785	REJECT	NS=2;DP=448;DPB=524.0;AC=2;AN=4;AF=0.5;RO=261;AO=262;PRO=0.0;PAO=0.0;QR=10067;QA=9879;PQR=0.0;PQA=0.0;SRF=136;SRR=125;SAF=149;SAR=113;SRP=4.017;SAP=13.7516;AB=0.5;ABP=3.0103;RUN=1;RPP=3.14291;RPPR=3.2183;RPL=129.0;RPR=133.0;EPP=64.3088;EPPR=28.1777;DPRA=0.0;ODDS=460.335;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992366;PAIREDR=0.992337;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.4255;Dels=0.0;FS=5.291;HaplotypeScore=5.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.405;QD=16.44;ReadPosRankSum=-0.0545;SOR=0.8115;ClippingRankSum=-1.968	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:146:76:2922:72:2696:-202.508,0.0,-222.837:70:48:146:75,69:2125,0,2442:1:.:1:.:.:.:-0.00355946	0/1:129.501:374:185:7145:190:7183:-544.502,0.0,-541.07:189:51:373:183,189:6899,0,6813:.:1:1:.:.:.:-0.0302105
chr12	51213433	.	A	G	2706.58	PASS	SOMATIC;NS=2;DP=379;DPB=379.0;AC=1;AN=3;AF=0.25;RO=270;AO=109;PRO=0.0;PAO=0.0;QR=10092;QA=3942;PQR=0.0;PQA=0.0;SRF=191;SRR=79;SAF=70;SAR=39;SRP=103.895;SAP=22.1551;AB=0.396364;ABP=28.6653;RUN=1;RPP=24.7051;RPPR=24.7572;RPL=38.0;RPR=71.0;EPP=8.76769;EPPR=23.1165;DPRA=2.64423;ODDS=65.7867;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9407;PAIRED=0.990826;PAIREDR=0.996296;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.408;Dels=0.0;FS=4.616;HaplotypeScore=7.7789;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.528;QD=12.93;ReadPosRankSum=0.805;SOR=0.452	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.623:102:104:3901:0:0:0.0,-28.1448,-351.093:0:0:102:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:119.3115:275:166:6191:109:3942:-280.565,0.0,-482.875:109:40:275:157,106:36.0:0.411:2:3584,0,6085:.:1:1:.:.:1:-0.0302105
chr12	53662624	.	C	A	9513.95	REJECT	NS=2;DP=358;DPB=406.0;AC=2;AN=4;AF=0.5;RO=80;AO=326;PRO=0.0;PAO=0.0;QR=3103;QA=11898;PQR=0.0;PQA=0.0;SRF=50;SRR=30;SAF=161;SAR=165;SRP=13.8677;SAP=3.11688;AB=0.802956;ABP=326.677;RUN=1;RPP=17.1049;RPPR=3.0103;RPL=140.0;RPR=186.0;EPP=15.9059;EPPR=4.74748;DPRA=0.0;ODDS=95.658;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993865;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.021;Dels=0.0;FS=10.8185;HaplotypeScore=5.8979;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2575;QD=24.96;ReadPosRankSum=-1.021;SOR=0.6625;ClippingRankSum=0.481	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6135:93:44:1691:51:1865:-142.168,0.0,-126.486:49:53:93:44,48:1609,0,1578:1:.:1:.:.:.:-0.00355946	0/1:118.6135:310:36:1412:275:10033:-818.303,0.0,-42.9079:274:88:310:36,274:10179,0,687:.:1:1:.:.:.:-0.0302105
chr12	53662735	.	C	T	10319.9	REJECT	NS=2;DP=386;DPB=437.0;AC=2;AN=4;AF=0.5;RO=100;AO=337;PRO=0.0;PAO=0.0;QR=3752;QA=12917;PQR=0.0;PQA=0.0;SRF=47;SRR=53;SAF=150;SAR=187;SRP=3.79203;SAP=11.8315;AB=0.771167;ABP=282.117;RUN=1;RPP=37.3479;RPPR=10.0459;RPL=205.0;RPR=132.0;EPP=11.8315;EPPR=3.35774;DPRA=0.0;ODDS=169.05;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7115;Dels=0.0;FS=2.4045;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2405;QD=25.195;ReadPosRankSum=-0.2755;SOR=0.6915;ClippingRankSum=-0.629	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.253:102:51:1913:51:1988:-151.316,0.0,-144.538:51:50:102:51,51:1771,0,1698:1:.:1:.:.:.:-0.00355946	0/1:117.253:335:49:1839:286:10929:-892.279,0.0,-74.7093:286:85:335:49,286:11185,0,1047:.:1:1:.:.:.:-0.0302105
chr12	53664148	.	G	A	7045.59	REJECT	NS=2;DP=270;DPB=305.0;AC=2;AN=4;AF=0.5;RO=60;AO=243;PRO=0.0;PAO=0.0;QR=2208;QA=8917;PQR=0.0;PQA=0.0;SRF=42;SRR=18;SAF=141;SAR=102;SRP=23.8564;SAP=16.6021;AB=0.796721;ABP=236.255;RUN=1;RPP=80.2986;RPPR=27.4756;RPL=75.0;RPR=168.0;EPP=6.23623;EPPR=4.31318;DPRA=0.0;ODDS=60.6093;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.579;Dels=0.0;FS=5.9435;HaplotypeScore=6.8232;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.288;QD=25.3;ReadPosRankSum=2.1895;SOR=0.2765;ClippingRankSum=0.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3495:68:32:1168:36:1297:-98.3995,0.0,-86.7778:36:53:67:31,36:1218,0,1032:1:.:1:.:.:.:-0.00355946	0/1:118.3495:235:28:1040:207:7620:-621.911,0.0,-29.9343:207:88:235:28,207:7868,0,458:.:1:1:.:.:.:-0.0302105
chr12	53670545	.	C	A	10964.7	REJECT	NS=2;DP=400;DPB=462.0;AC=2;AN=4;AF=0.5;RO=101;AO=360;PRO=0.0;PAO=0.0;QR=3823;QA=13657;PQR=0.0;PQA=0.0;SRF=43;SRR=58;SAF=164;SAR=196;SRP=7.84774;SAP=9.18693;AB=0.779221;ABP=315.872;RUN=1;RPP=4.55446;RPPR=3.0318;RPL=188.0;RPR=172.0;EPP=3.0103;EPPR=6.64375;DPRA=0.0;ODDS=145.926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997222;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.178;Dels=0.0;FS=4.127;HaplotypeScore=5.8763;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4875;QD=26.505;ReadPosRankSum=0.6635;SOR=0.5685;ClippingRankSum=-0.925	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:55:2093:69:2616:-201.817,0.0,-154.775:68:56:123:54,68:2384,0,1834:1:.:1:.:.:.:-0.00355946	0/1:129.501:338:46:1730:291:11041:-901.855,0.0,-64.3376:291:86:337:46,291:11418,0,925:.:1:1:.:.:.:-0.0302105
chr12	53681883	.	A	T	12327.9	REJECT	NS=2;DP=326;DPB=372.0;AC=4;AN=4;AF=1.0;RO=0;AO=372;PRO=0.0;PAO=0.0;QR=0;QA=14186;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=205;SAR=167;SRP=0.0;SAP=11.4393;AB=0.0;ABP=0.0;RUN=1;RPP=20.0318;RPPR=0.0;RPL=159.0;RPR=213.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=61.7401;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8771;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.11;SOR=0.915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:92:3514:-316.344,-24.9383,0.0:91:100:91:0,90:3722,270,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:280:0:0:280:10672:-959.95,-75.8315,0.0:280:100:280:0,280:11988,837,0:.:1:1:.:.:.:-0.0302105
chr12	53682267	.	CAA	C	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:41,0:41:0.195122,0.0:60.0,0.0:37.4827,0.0:0.0,0.0:0,0:0,0:24,17,0,0:0:0:41:.:.:.:.:0:.:-0.00355946	0/1:84,45:129:0.119048,0.933333:60.0,60.4444:37.4372,38.9368:0.0,0.0:73,10:27,10:48,36,28,17:45:35:129:.:.:.:.:1:.:-0.0302105
chr12	53682326	.	G	A	2527.68	PASS	SOMATIC;NS=2;DP=373;DPB=373.0;AC=1;AN=3;AF=0.25;RO=274;AO=98;PRO=0.0;PAO=0.0;QR=10350;QA=3705;PQR=0.0;PQA=0.0;SRF=174;SRR=100;SAF=61;SAR=37;SRP=46.408;SAP=15.7732;AB=0.357664;ABP=51.2265;RUN=1;RPP=4.4284;RPPR=3.80281;RPL=45.0;RPR=53.0;EPP=3.09893;EPPR=6.84604;DPRA=2.76768;ODDS=62.6985;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.2041;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992701;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.253;Dels=0.0;FS=1.026;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.179;QD=12.02;ReadPosRankSum=-0.362;SOR=0.552	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:96:99:3752:0:0:0.0,-26.8036,-337.709:0:0:96:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:274:175:6598:98:3705:-259.353,0.0,-519.594:98:36:273:172,96:38.0:0.356:2:3321,0,6584:.:1:1:.:.:1:-0.0302105
chr12	53682457	.	G	A	9285.235	REJECT	NS=2;DP=382;DPB=434.0;AC=3;AN=4;AF=0.75;RO=106;AO=327;PRO=0.0;PAO=0.0;QR=4079;QA=12378;PQR=0.0;PQA=0.0;SRF=42;SRR=64;SAF=140;SAR=187;SRP=12.9253;SAP=17.6794;AB=0.679758;ABP=95.9113;RUN=1;RPP=7.85129;RPPR=14.81;RPL=150.0;RPR=177.0;EPP=20.2825;EPPR=19.071;DPRA=0.0;ODDS=64.641;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.15;Dels=0.0;FS=0.9975;HaplotypeScore=7.8459;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.963;QD=28.115;ReadPosRankSum=0.058;SOR=0.89	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3899:-350.963,-27.6473,0.0:100:100:100:0,99:3950,297,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:331:106:4079:225:8479:-673.027,0.0,-277.265:225:68:331:106,225:8455,0,3573:.:1:1:.:.:.:-0.0302105
chr12	53682986	.	C	T	6795.63	REJECT	NS=2;DP=316;DPB=368.0;AC=3;AN=4;AF=0.75;RO=111;AO=257;PRO=0.0;PAO=0.0;QR=4213;QA=9687;PQR=0.0;PQA=0.0;SRF=55;SRR=56;SAF=99;SAR=158;SRP=3.02986;SAP=32.4223;AB=0.582707;ABP=18.8147;RUN=1;RPP=7.47998;RPPR=3.18637;RPL=140.0;RPR=117.0;EPP=3.22153;EPPR=3.02986;DPRA=0.0;ODDS=64.5849;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988327;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.435;Dels=0.0;FS=3.877;HaplotypeScore=5.9288;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.318;QD=25.445;ReadPosRankSum=0.002;SOR=1.324	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.6875:100:0:0:102:3852:-346.704,-27.6229,0.0:100:100:100:0,99:3993,296,0:1:.:1:.:.:.:-0.00355946	0/1:120.6875:265:111:4213:155:5835:-452.853,0.0,-306.95:154:58:265:111,154:5716,0,3901:.:1:1:.:.:.:-0.0302105
chr12	53684619	.	A	G	7345.7	REJECT	NS=2;DP=301;DPB=353.0;AC=3;AN=4;AF=0.75;RO=87;AO=266;PRO=0.0;PAO=0.0;QR=3333;QA=10210;PQR=0.0;PQA=0.0;SRF=62;SRR=25;SAF=187;SAR=79;SRP=37.1798;SAP=98.2285;AB=0.656126;ABP=56.5761;RUN=1;RPP=14.7983;RPPR=4.23331;RPL=114.0;RPR=152.0;EPP=9.41043;EPPR=6.03039;DPRA=0.0;ODDS=63.2938;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.93609;PAIREDR=0.942529;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.897;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.142;QD=27.33;ReadPosRankSum=-0.452;SOR=1.201	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3784:-340.566,-27.0622,0.0:99:100:99:0,98:4035,294,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:251:87:3333:166:6426:-509.486,0.0,-231.297:165:66:251:86,164:6393,0,2918:.:1:1:.:.:.:-0.0302105
chr12	53686703	.	G	A	15001.599999999999	REJECT	NS=2;DP=397;DPB=458.0;AC=4;AN=4;AF=1.0;RO=0;AO=458;PRO=0.0;PAO=0.0;QR=0;QA=17388;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=225;SAR=233;SRP=0.0;SAP=3.31374;AB=0.0;ABP=0.0;RUN=1;RPP=3.48442;RPPR=0.0;RPL=224.0;RPR=234.0;EPP=6.72741;EPPR=0.0;DPRA=0.0;ODDS=78.4335;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9869;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8902;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.295;SOR=0.8105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.7175:116:0:0:119:4388:-394.865,-32.1882,0.0:116:100:116:0,113:4501,338,0:1:.:1:.:.:.:-0.00355946	1/1:127.7175:338:0:0:339:13000:-1169.21,-91.7814,0.0:338:100:338:0,337:14438,996,0:.:1:1:.:.:.:-0.0302105
chr12	56375881	.	C	T	1504.71	REJECT	NS=1;DP=113;DPB=113.0;AC=1;AN=4;AF=0.5;RO=58;AO=55;PRO=0.0;PAO=0.0;QR=2142;QA=2119;PQR=0.0;PQA=0.0;SRF=33;SRR=25;SAF=34;SAR=21;SRP=5.40641;SAP=9.68264;AB=0.486726;ABP=3.18325;RUN=1;RPP=36.2141;RPPR=24.5753;RPL=13.0;RPR=42.0;EPP=9.68264;EPPR=15.1406;DPRA=0.0;ODDS=346.473;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=2.783;FS=1.536;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.526;QD=16.36;ReadPosRankSum=1.152;SOR=0.908;ClippingRankSum=0.537	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.98:113:58:2142:55:2119:-160.129,0.0,-162.166:55:49:113:58,55:1877,0,1759:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	56477694	.	A	T	1665.175	REJECT	NS=2;DP=265;DPB=307.0;AC=2;AN=4;AF=0.5;RO=227;AO=80;PRO=0.0;PAO=0.0;QR=8710;QA=3061;PQR=0.0;PQA=0.0;SRF=66;SRR=161;SAF=31;SAR=49;SRP=89.3431;SAP=11.8048;AB=0.260586;ABP=155.855;RUN=1;RPP=21.3592;RPPR=43.4265;RPL=53.0;RPR=27.0;EPP=6.91895;EPPR=3.01987;DPRA=0.0;ODDS=145.539;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995595;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8315;Dels=0.0;FS=4.108;HaplotypeScore=1.9466;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4555;QD=11.13;ReadPosRankSum=1.0825;SOR=0.3755;ClippingRankSum=0.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.3565:81:40:1541:43:1657:-126.67,0.0,-116.247:42:51:81:39,41:1521,0,1412:1:.:1:.:.:.:-0.00355946	0/1:123.3565:224:187:7169:37:1404:-65.65,0.0,-584.238:37:17:224:187,37:886,0,7305:.:1:1:.:.:.:-0.0302105
chr12	56493822	.	A	C	7539.21	REJECT	NS=2;DP=274;DPB=316.0;AC=2;AN=4;AF=0.5;RO=72;AO=244;PRO=0.0;PAO=0.0;QR=2769;QA=9443;PQR=0.0;PQA=0.0;SRF=33;SRR=39;SAF=106;SAR=138;SRP=4.09604;SAP=12.1234;AB=0.772152;ABP=206.304;RUN=1;RPP=30.9191;RPPR=3.0103;RPL=150.0;RPR=94.0;EPP=4.29182;EPPR=3.13094;DPRA=0.0;ODDS=143.493;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995902;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.441;Dels=0.0;FS=1.1535;HaplotypeScore=4.9235;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.845;QD=27.04;ReadPosRankSum=-0.051;SOR=0.569;ClippingRankSum=-0.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:36:1364:46:1754:-135.68,0.0,-100.598:46:56:81:35,46:1668,0,1222:1:.:1:.:.:.:-0.00355946	0/1:129.501:233:36:1405:198:7689:-628.26,0.0,-62.9805:197:85:233:36,197:7913,0,875:.:1:1:.:.:.:-0.0302105
chr12	56494991	.	G	A	9984.73	REJECT	NS=2;DP=361;DPB=414.0;AC=2;AN=4;AF=0.5;RO=89;AO=325;PRO=0.0;PAO=0.0;QR=3413;QA=12420;PQR=0.0;PQA=0.0;SRF=39;SRR=50;SAF=173;SAR=152;SRP=5.96253;SAP=5.95682;AB=0.785024;ABP=295.142;RUN=1;RPP=3.07043;RPPR=8.49998;RPL=161.0;RPR=164.0;EPP=3.01698;EPPR=4.98658;DPRA=0.0;ODDS=142.33;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984615;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.159;Dels=0.0;FS=5.819;HaplotypeScore=13.5975;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.211;QD=26.175;ReadPosRankSum=-0.178;SOR=0.773;ClippingRankSum=0.607	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.2615:103:46:1777:58:2183:-168.31,0.0,-131.766:57:55:103:46,57:1949,0,1643:1:.:1:.:.:.:-0.00355946	0/1:122.2615:308:43:1636:267:10237:-836.827,0.0,-63.1993:265:86:308:43,264:10409,0,909:.:1:1:.:.:.:-0.0302105
chr12	57491672	.	C	CA	1038.42	PASS	SOMATIC;NS=2;DP=227;DPB=321.125;AC=2;AN=3;AF=0.25;RO=136;AO=48;PRO=70.1667;PAO=63.1667;QR=5070;QA=1499;PQR=2503.83;PQA=2215.83;SRF=76;SRR=60;SAF=25;SAR=23;SRP=7.09778;SAP=3.19126;AB=0.269461;ABP=80.1041;RUN=1;RPP=5.9056;RPPR=28.557;RPL=28.0;RPR=20.0;EPP=7.5342;EPPR=3.26577;DPRA=0.0;ODDS=9.86917;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.157;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-0.319;QD=4.27;RPA=12,13;RU=A;ReadPosRankSum=2.324;SOR=0.683;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7328:60:51:1903:3:106:0.0,-3.84405,-177.989:3:5:58:.:.:.:.:1:.:.:.:-0.00355946	0/1:115.7825:189:85:3167:45:1393:-109.272,0.0,-278.746:55:33:166:122,65:943,0,2339:.:1:1:.:.:.:-0.0302105
chr12	57491672	.	CA	C	1038.42	REJECT	NS=2;DP=227;DPB=321.125;AC=2;AN=2;AF=0.0;RO=136;AO=19;PRO=70.1667;PAO=51.6667;QR=5070;QA=642;PQR=2503.83;PQA=1787.33;SRF=76;SRR=60;SAF=9;SAR=10;SRP=7.09778;SAP=3.12459;AB=0.0898204;ABP=247.06;RUN=1;RPP=3.12459;RPPR=28.557;RPL=10.0;RPR=9.0;EPP=3.12459;EPPR=3.26577;DPRA=0.0;ODDS=9.86917;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7328:60:51:1903:4:130:0.0,-3.22681,-207.814:4:7:58:.:.:1:.:.:.:-0.00355946	./1:132.565:167:85:3167:15:512:-109.272,-91.9344,-427.956:15:10:145:.:.:1:.:.:.:-0.0302105
chr12	57491774	.	G	A	3668.97	PASS	SOMATIC;NS=2;DP=523;DPB=523.0;AC=1;AN=3;AF=0.25;RO=383;AO=140;PRO=0.0;PAO=0.0;QR=14313;QA=5373;PQR=0.0;PQA=0.0;SRF=238;SRR=145;SAF=87;SAR=53;SRP=52.047;SAP=20.9405;AB=0.346535;ABP=85.6552;RUN=1;RPP=3.56868;RPPR=3.06133;RPL=73.0;RPR=67.0;EPP=4.00297;EPPR=22.7463;DPRA=3.39496;ODDS=75.1467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7714;MQMR=60.0;PAIRED=0.978571;PAIREDR=0.997389;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.144;Dels=0.0;FS=0.565;HaplotypeScore=8.7123;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.174;QD=11.71;ReadPosRankSum=0.593;SOR=0.628	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.763:116:119:4423:0:0:0.0,-32.2098,-398.049:0:0:116:113,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:118.8815:402:264:9890:140:5373:-374.24,0.0,-780.126:138:35:402:255,135:38.0:0.35:2:4735,0,9858:.:1:1:.:.:1:-0.0302105
chr12	57491863	.	G	A	3770.56	PASS	SOMATIC;NS=2;DP=532;DPB=532.0;AC=1;AN=3;AF=0.25;RO=388;AO=144;PRO=0.0;PAO=0.0;QR=14771;QA=5510;PQR=0.0;PQA=0.0;SRF=222;SRR=166;SAF=88;SAR=56;SRP=20.5612;SAP=18.4519;AB=0.350365;ABP=82.9427;RUN=1;RPP=5.18177;RPPR=6.23393;RPL=66.0;RPR=78.0;EPP=3.25157;EPPR=6.23393;DPRA=3.39669;ODDS=76.4226;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992268;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.107;Dels=0.0;FS=1.864;HaplotypeScore=5.8436;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.333;QD=11.86;ReadPosRankSum=1.059;SOR=0.876	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.9:116:121:4558:0:0:0.0,-32.7639,-410.193:0:0:116:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:117.45:411:267:10213:144:5510:-384.251,0.0,-807.26:144:35:411:260,142:38.0:0.356:2:4903,0,10191:.:1:1:.:.:1:-0.0302105
chr12	57492745	.	G	A	4181.28	PASS	SOMATIC;NS=2;DP=629;DPB=629.0;AC=1;AN=3;AF=0.25;RO=469;AO=160;PRO=0.0;PAO=0.0;QR=18004;QA=6112;PQR=0.0;PQA=0.0;SRF=230;SRR=239;SAF=80;SAR=80;SRP=3.38533;SAP=3.0103;AB=0.345572;ABP=98.9162;RUN=1;RPP=3.49888;RPPR=4.68173;RPL=77.0;RPR=83.0;EPP=9.579;EPPR=3.12605;DPRA=2.78916;ODDS=104.497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.975;PAIREDR=0.991471;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.068;Dels=0.0;FS=0.0;HaplotypeScore=2.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.333;QD=11.66;ReadPosRankSum=-0.835;SOR=0.686	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:150.943:163:166:6334:0:0:0.0,-44.9566,-569.881:0:0:163:160,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:124.9715:462:303:11670:160:6112:-424.309,0.0,-924.145:159:35:462:291,153:38.0:0.346:2:5416,0,11660:.:1:1:.:.:1:-0.0302105
chr12	57492996	.	G	A	9003.365	REJECT	NS=2;DP=540;DPB=629.0;AC=2;AN=4;AF=0.5;RO=302;AO=327;PRO=0.0;PAO=0.0;QR=11575;QA=12489;PQR=0.0;PQA=0.0;SRF=145;SRR=157;SAF=169;SAR=158;SRP=4.0457;SAP=3.81381;AB=0.519873;ABP=5.16796;RUN=1;RPP=14.1731;RPPR=3.0103;RPL=184.0;RPR=143.0;EPP=3.33569;EPPR=11.3223;DPRA=0.0;ODDS=536.952;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996942;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2055;Dels=0.0;FS=1.8055;HaplotypeScore=12.8102;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0405;QD=18.665;ReadPosRankSum=2.2725;SOR=0.688;ClippingRankSum=-0.873	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.23:174:81:3130:95:3623:-278.273,0.0,-233.947:93:53:174:80,92:3213,0,2862:1:.:1:.:.:.:-0.00355946	0/1:119.23:452:221:8445:232:8866:-674.719,0.0,-637.222:231:51:452:221,231:8581,0,8079:.:1:1:.:.:.:-0.0302105
chr12	57494360	.	T	G	1644.79	REJECT	NS=2;DP=418;DPB=475.0;AC=2;AN=4;AF=0.5;RO=374;AO=97;PRO=0.0;PAO=0.0;QR=14165;QA=3609;PQR=0.0;PQA=0.0;SRF=140;SRR=234;SAF=34;SAR=63;SRP=54.3128;SAP=21.8372;AB=0.204211;ABP=363.982;RUN=1;RPP=37.0599;RPPR=12.3;RPL=68.0;RPR=29.0;EPP=6.79359;EPPR=3.1032;DPRA=0.0;ODDS=159.881;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.6417;PAIRED=0.948454;PAIREDR=0.994652;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.199;Dels=0.0;FS=1.853;HaplotypeScore=10.7622;MLEAC=1;MLEAF=0.5;MQ=60.385;MQRankSum=-1.078;QD=8.165;ReadPosRankSum=-1.2065;SOR=0.782;ClippingRankSum=0.934	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.833:104:62:2310:45:1690:-123.51,0.0,-178.941:43:42:104:59,42:1455,0,2260:1:.:1:.:.:.:-0.00355946	0/1:120.833:365:312:11855:52:1919:-74.0816,0.0,-967.754:50:13:361:310,48:875,0,12012:.:1:1:.:.:.:-0.0302105
chr12	57494407	.	G	GAGAGAA	.	PASS	SOMATIC;AC=1;AN=4;END=57494407;HOMLEN=21;HOMSEQ=AGAGAAAGAGAAAGAGAAAGA;SVLEN=6;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.00355946	0/1:124,48:48:28:172:.:.:.:1:.:.:-0.0302105
chr12	57494421	.	GAGAAAGAAAGAA	G	.	PASS	AC=2;AN=4;END=57494433;HOMLEN=51;HOMSEQ=AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA;SVLEN=-12;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:32,29:29:48:61:.:.:.:1:.:.:-0.00355946	0/1:71,65:65:48:136:.:.:.:1:.:.:-0.0302105
chr12	57494427	.	GAAAGAA	G	6458.73	PASS	SOMATIC;DP=228;AC=1;AN=4;AF=0.5;MQ0=0;END=57494433;HOMLEN=1;HOMSEQ=A;SVLEN=-6;SVTYPE=DEL;BaseQRankSum=1.406;FS=38.08;MLEAC=1;MLEAF=0.5;MQ=55.49;MQRankSum=-0.671;QD=14.16;ReadPosRankSum=-0.719;SOR=0.634	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00355946	0/1:75,88:88:54:163:217:99.0:6496,0,3735:.:1:.:1:.:.:-0.0302105
chr12	57494481	.	AAG	A	5266.73	PASS	SOMATIC;DP=242;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.508;FS=6.838;MLEAC=1;MLEAF=0.5;MQ=48.8;MQRankSum=5.112;QD=21.76;RPA=2,1;RU=AG;ReadPosRankSum=-4.53;SOR=0.399;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00355946	0/1:83,128:233:99.0:5304,0,1114:128:61:211:.:1:.:.:.:.:-0.0302105
chr12	57494483	.	G	GAGAAAGAAAGAA	.	PASS	AC=1;AN=4;END=57494483;HOMLEN=49;HOMSEQ=AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA;SVLEN=12;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7,22:22:76:29:.:.:.:1:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:.:.:.:-0.0302105
chr12	57494483	.	GAGAAAGAAAGAAAGAA	G	.	PASS	AC=2;AN=4;END=57494499;HOMLEN=33;HOMSEQ=AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA;SVLEN=-16;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18,39:39:68:57:.:.:.:1:.:.:-0.00355946	0/1:45,94:94:68:139:.:.:.:1:.:.:-0.0302105
chr12	57494483	.	GAGAAAGAAAGAAAGAAAGAAAGAA	G	.	PASS	SOMATIC;AC=1;AN=4;END=57494507;HOMLEN=25;HOMSEQ=AGAAAGAAAGAAAGAAAGAAAGAAA;SVLEN=-24;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.00355946	0/1:64,103:103:62:167:.:.:.:1:.:.:-0.0302105
chr12	57494880	.	C	CT	114.513	REJECT	NS=2;DP=255;DPB=329.5;AC=2;AN=4;AF=0.5;RO=190;AO=27;PRO=60.8333;PAO=45.8333;QR=7068;QA=866;PQR=2116.17;PQA=1571.17;SRF=30;SRR=160;SAF=8;SAR=19;SRP=196.157;SAP=12.7417;AB=0.105882;ABP=347.048;RUN=1;RPP=26.2531;RPPR=41.4568;RPL=22.0;RPR=5.0;EPP=3.09072;EPPR=3.05602;DPRA=0.0;ODDS=3.84743;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978947;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.212;FS=3.727;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.367;QD=0.68;ReadPosRankSum=0.902;SOR=0.177;ClippingRankSum=-0.902	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:81.27265:58:40:1459:9:296:-11.7446,0.0,-135.404:9:17:57:50,10:91,0,1071:1:.:1:.:.:.:-0.00355946	0/1:16.7858:198:150:5609:18:570:-7.82621,0.0,-491.361:18:10:186:.:.:.:.:1:.:.:.:-0.0302105
chr12	57494880	.	CT	C	114.513	REJECT	NS=2;DP=255;DPB=329.5;AC=2;AN=2;AF=0.0;RO=190;AO=23;PRO=60.8333;PAO=42.3333;QR=7068;QA=793;PQR=2116.17;PQA=1462.67;SRF=30;SRR=160;SAF=3;SAR=20;SRP=196.157;SAP=30.2953;AB=0.0901961;ABP=374.979;RUN=1;RPP=3.10471;RPPR=41.4568;RPL=11.0;RPR=12.0;EPP=7.63648;EPPR=3.05602;DPRA=0.0;ODDS=3.84743;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.4348;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978947;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:71.5453:57:40:1459:5:182:-11.7446,-6.48585,-149.17:5:9:54:.:.:1:.:.:.:-0.00355946	./1:16.7858:198:150:5609:18:611:-7.82621,-1.36122,-527.507:18:10:186:.:.:1:.:.:.:-0.0302105
chr12	57497005	.	T	C	99.648	REJECT	NS=2;DP=9;DPB=9.0;AC=3;AN=4;AF=0.75;RO=3;AO=6;PRO=0.0;PAO=0.0;QR=93;QA=183;PQR=0.0;PQA=0.0;SRF=0;SRR=3;SAF=0;SAR=6;SRP=9.52472;SAP=16.0391;AB=0.625;ABP=4.09604;RUN=1;RPP=4.45795;RPPR=3.73412;RPL=2.0;RPR=4.0;EPP=4.45795;EPPR=3.73412;DPRA=0.0;ODDS=1.67385;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.1667;MQMR=56.3333;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.322;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=57.78;MQRankSum=0.322;QD=12.47;ReadPosRankSum=-1.92;SOR=1.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:8.01481:1:0:0:1:39:-3.89308,-0.300974,0.0:1:100:1:.:.:.:.:1:.:.:.:-0.00355946	0/1:56.7282:8:3:93:5:144:-10.9375,0.0,-6.30014:5:63:8:3,5:128,0,86:.:1:1:.:.:.:-0.0302105
chr12	57497970	.	G	A	5239.63	PASS	SOMATIC;NS=2;DP=641;DPB=641.0;AC=1;AN=3;AF=0.25;RO=448;AO=193;PRO=0.0;PAO=0.0;QR=17177;QA=7332;PQR=0.0;PQA=0.0;SRF=215;SRR=233;SAF=87;SAR=106;SRP=4.58074;SAP=7.07197;AB=0.403766;ABP=41.4608;RUN=1;RPP=3.11156;RPPR=6.2869;RPL=98.0;RPR=95.0;EPP=3.02155;EPPR=3.32051;DPRA=2.93252;ODDS=102.653;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994819;PAIREDR=0.993304;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.047;Dels=0.0;FS=1.123;HaplotypeScore=9.8288;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.205;QD=14.08;ReadPosRankSum=-0.28;SOR=0.824	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:158:163:6269:0:0:0.0,-44.1556,-564.039:0:0:158:154,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:476:285:10908:193:7332:-529.978,0.0,-851.601:192:40:476:274,183:37.0:0.398:2:6730,0,10754:.:1:1:.:.:1:-0.0302105
chr12	57502182	.	C	T	7489.540000000001	REJECT	NS=2;DP=460;DPB=535.0;AC=2;AN=4;AF=0.5;RO=265;AO=270;PRO=0.0;PAO=0.0;QR=10004;QA=10478;PQR=0.0;PQA=0.0;SRF=142;SRR=123;SAF=118;SAR=152;SRP=5.96842;SAP=12.3074;AB=0.504673;ABP=3.11177;RUN=1;RPP=4.16842;RPPR=13.0482;RPL=141.0;RPR=129.0;EPP=13.4334;EPPR=3.67403;DPRA=0.0;ODDS=451.979;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988679;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.306;Dels=0.0;FS=9.5105;HaplotypeScore=6.8544;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.723;QD=18.555;ReadPosRankSum=1.151;SOR=0.796;ClippingRankSum=0.809	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.455:146:68:2624:80:3085:-237.479,0.0,-196.013:78:53:146:67,77:2730,0,2287:1:.:1:.:.:.:-0.00355946	0/1:118.455:386:197:7380:190:7393:-560.481,0.0,-558.982:190:49:386:196,190:7111,0,7096:.:1:1:.:.:.:-0.0302105
chr12	57502309	.	T	TGGGGAGGCAA	2466.07	PASS	SOMATIC;NS=2;DP=445;DPB=611.583;AC=1;AN=4;AF=0.25;RO=353;AO=81;PRO=55.5;PAO=86.5;QR=13350;QA=2762;PQR=1845.5;PQA=2931.5;SRF=207;SRR=146;SAF=39;SAR=42;SRP=25.9;SAP=3.25157;AB=0.248466;ABP=182.163;RUN=1;RPP=3.25157;RPPR=3.16409;RPL=42.0;RPR=39.0;EPP=3.03711;EPPR=3.01645;DPRA=2.7395;ODDS=73.3753;GTI=0;TYPE=ins;CIGAR=1M10I11M;NUMALT=1;MEANALT=9.0;LEN=10;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997167;technology.ILLUMINA=1.0;MQ0=0;END=57502309;HOMLEN=10;HOMSEQ=GGGGAGGCAA;SVLEN=10;SVTYPE=INS;BaseQRankSum=1.702;FS=7.633;MLEAC=1;MLEAF=0.5;MQ=60.81;MQRankSum=3.89;QD=8.92;RPA=1,2;RU=GGGGAGGCAA;ReadPosRankSum=-1.884;SOR=0.496;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:119:116:4359:0:0:0.0,-31.4405,-392.319:0:0:116:.:.:.:.:0:.:.:.:-0.00355946	0/1:129.501:362:237:8991:81:2762:-251.693,0.0,-714.312:114:32:356:260,152:11902,0,26312:.:1:1:1:.:.:-0.0302105
chr12	57502981	.	C	T	5928.72	REJECT	NS=2;DP=232;DPB=267.0;AC=2;AN=4;AF=0.5;RO=61;AO=206;PRO=0.0;PAO=0.0;QR=2261;QA=7602;PQR=0.0;PQA=0.0;SRF=49;SRR=12;SAF=152;SAR=54;SRP=51.7438;SAP=104.247;AB=0.771536;ABP=174.004;RUN=1;RPP=21.6049;RPPR=25.259;RPL=82.0;RPR=124.0;EPP=3.38978;EPPR=3.90025;DPRA=0.0;ODDS=67.2318;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7573;MQMR=60.0;PAIRED=0.990291;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7665;Dels=0.0;FS=3.1505;HaplotypeScore=18.3463;MLEAC=1;MLEAF=0.5;MQ=59.895;MQRankSum=0.1815;QD=24.055;ReadPosRankSum=-0.5135;SOR=0.5085;ClippingRankSum=-0.135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:34:1300:34:1221:-91.5331,0.0,-98.67:33:49:67:34,32:1059,0,1232:1:.:1:.:.:.:-0.00355946	0/1:129.501:198:27:961:172:6381:-519.797,0.0,-32.6102:171:86:198:27,171:6461,0,463:.:1:1:.:.:.:-0.0302105
chr12	57503775	.	C	T	8460.595000000001	REJECT	NS=2;DP=505;DPB=577.0;AC=2;AN=4;AF=0.5;RO=277;AO=300;PRO=0.0;PAO=0.0;QR=10647;QA=11444;PQR=0.0;PQA=0.0;SRF=130;SRR=147;SAF=140;SAR=160;SRP=5.27584;SAP=5.9056;AB=0.519931;ABP=5.00113;RUN=1;RPP=3.12611;RPPR=4.77413;RPL=152.0;RPR=148.0;EPP=3.47355;EPPR=3.20628;DPRA=0.0;ODDS=439.595;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993333;PAIREDR=0.99278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.327;Dels=0.0;FS=0.6555;HaplotypeScore=7.832;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1625;QD=18.735;ReadPosRankSum=-0.378;SOR=0.748;ClippingRankSum=0.059	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.9055:143:67:2561:77:2907:-222.556,0.0,-191.459:77:53:143:66,77:2660,0,2328:1:.:1:.:.:.:-0.00355946	0/1:121.9055:433:210:8086:223:8537:-650.545,0.0,-609.947:223:52:433:210,223:8285,0,7770:.:1:1:.:.:.:-0.0302105
chr12	57504197	.	G	T	4166.05	PASS	SOMATIC;NS=2;DP=589;DPB=589.0;AC=1;AN=3;AF=0.25;RO=431;AO=158;PRO=0.0;PAO=0.0;QR=16305;QA=6035;PQR=0.0;PQA=0.0;SRF=204;SRR=227;SAF=72;SAR=86;SRP=5.67552;SAP=5.70403;AB=0.355856;ABP=83.1396;RUN=1;RPP=7.46319;RPPR=3.25717;RPL=70.0;RPR=88.0;EPP=4.38465;EPPR=3.13626;DPRA=3.06207;ODDS=91.3156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993671;PAIREDR=0.99768;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.811;Dels=0.0;FS=0.541;HaplotypeScore=10.727;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.048;QD=12.17;ReadPosRankSum=1.274;SOR=0.739	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:142:145:5412:0:0:0.0,-39.2319,-486.948:0:0:142:140,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:443:286:10893:158:6035:-422.923,0.0,-859.443:157:36:443:274,151:38.0:0.358:2:5418,0,10853:.:1:1:.:.:1:-0.0302105
chr12	57504529	.	T	C	4512.64	PASS	SOMATIC;NS=2;DP=540;DPB=540.0;AC=1;AN=3;AF=0.25;RO=376;AO=164;PRO=0.0;PAO=0.0;QR=14584;QA=6307;PQR=0.0;PQA=0.0;SRF=191;SRR=185;SAF=81;SAR=83;SRP=3.21821;SAP=3.06326;AB=0.403941;ABP=35.5503;RUN=1;RPP=7.30028;RPPR=8.9241;RPL=91.0;RPR=73.0;EPP=3.8577;EPPR=3.0334;DPRA=3.02985;ODDS=84.6011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.231;Dels=0.0;FS=0.0;HaplotypeScore=6.8788;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.48;QD=14.33;ReadPosRankSum=0.618;SOR=0.668	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:131:134:5191:0:0:0.0,-36.3158,-467.118:0:0:131:128,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:406:242:9393:164:6307:-457.274,0.0,-734.806:164:40:406:233,159:38.0:0.407:2:5847,0,9297:.:1:1:.:.:1:-0.0302105
chr12	57859431	.	G	A	2176.535	REJECT	NS=2;DP=352;DPB=408.0;AC=2;AN=4;AF=0.5;RO=305;AO=102;PRO=0.0;PAO=0.0;QR=11551;QA=3865;PQR=0.0;PQA=0.0;SRF=190;SRR=115;SAF=68;SAR=34;SRP=43.0579;SAP=27.6203;AB=0.25;ABP=224.5;RUN=1;RPP=3.35092;RPPR=16.1744;RPL=49.0;RPR=53.0;EPP=8.46027;EPPR=8.20047;DPRA=0.0;ODDS=133.388;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996721;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4605;Dels=0.0;FS=1.9235;HaplotypeScore=14.5507;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.749;QD=10.9;ReadPosRankSum=0.0525;SOR=0.8785;ClippingRankSum=0.55	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:50:1913:61:2306:-177.482,0.0,-142.102:60:54:110:50,59:2092,0,1679:1:.:1:.:.:.:-0.00355946	0/1:129.501:297:255:9638:41:1559:-60.1184,0.0,-786.765:41:14:296:255,41:882,0,9865:.:1:1:.:.:.:-0.0302105
chr12	57865321	.	G	A	1809.325	REJECT	NS=2;DP=353;DPB=403.0;AC=2;AN=4;AF=0.5;RO=311;AO=92;PRO=0.0;PAO=0.0;QR=11754;QA=3495;PQR=0.0;PQA=0.0;SRF=150;SRR=161;SAF=49;SAR=43;SRP=3.85515;SAP=3.86001;AB=0.228288;ABP=261.437;RUN=1;RPP=4.52089;RPPR=5.53088;RPL=50.0;RPR=42.0;EPP=5.3706;EPPR=3.35243;DPRA=0.0;ODDS=151.248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996785;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.076;Dels=0.0;FS=2.41;HaplotypeScore=4.8376;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.436;QD=9.655;ReadPosRankSum=0.553;SOR=0.784;ClippingRankSum=-0.51	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:51:1929:49:1852:-139.623,0.0,-146.547:49:49:100:51,49:1653,0,1790:1:.:1:.:.:.:-0.00355946	0/1:129.501:303:260:9825:43:1643:-65.7771,0.0,-801.678:43:14:303:260,43:954,0,10055:.:1:1:.:.:.:-0.0302105
chr12	57865821	.	G	C	1437.87	REJECT	NS=2;DP=286;DPB=332.0;AC=2;AN=4;AF=0.5;RO=254;AO=77;PRO=0.0;PAO=0.0;QR=9768;QA=2896;PQR=0.0;PQA=0.0;SRF=101;SRR=153;SAF=32;SAR=45;SRP=26.1271;SAP=7.77626;AB=0.231928;ABP=210.242;RUN=1;RPP=5.29458;RPPR=5.19887;RPL=43.0;RPR=34.0;EPP=4.39215;EPPR=18.0909;DPRA=0.0;ODDS=128.22;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987013;PAIREDR=0.996063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.356;Dels=0.0;FS=0.0;HaplotypeScore=4.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1095;QD=8.545;ReadPosRankSum=-0.0995;SOR=0.699;ClippingRankSum=0.329	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.2:89:49:1911:42:1540:-113.968,0.0,-147.389:40:45:89:49,38:1257,0,1731:1:.:1:.:.:.:-0.00355946	0/1:120.2:240:205:7857:35:1356:-56.9935,0.0,-641.745:35:15:240:205,35:816,0,8024:.:1:1:.:.:.:-0.0302105
chr12	57911160	.	G	A	2237.32	PASS	SOMATIC;NS=2;DP=391;DPB=391.0;AC=1;AN=3;AF=0.25;RO=302;AO=88;PRO=0.0;PAO=0.0;QR=11516;QA=3398;PQR=0.0;PQA=0.0;SRF=127;SRR=175;SAF=32;SAR=56;SRP=19.5768;SAP=17.2236;AB=0.315412;ABP=85.5807;RUN=1;RPP=3.109;RPPR=16.9307;RPL=45.0;RPR=43.0;EPP=3.89863;EPPR=3.72933;DPRA=2.49107;ODDS=70.8361;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996689;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.924;Dels=0.0;FS=4.429;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.462;QD=10.53;ReadPosRankSum=-1.605;SOR=0.962	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:112:4282:0:0:0.0,-30.3378,-385.376:0:0:111:110,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:278:190:7234:88:3398:-230.343,0.0,-575.411:88:32:277:186,86:38.0:0.315:2:2955,0,7237:.:1:1:.:.:1:-0.0302105
chr12	57911468	.	A	G	3073.36	PASS	SOMATIC;NS=2;DP=441;DPB=441.0;AC=1;AN=3;AF=0.25;RO=323;AO=117;PRO=0.0;PAO=0.0;QR=12206;QA=4445;PQR=0.0;PQA=0.0;SRF=164;SRR=159;SAF=60;SAR=57;SRP=3.17837;SAP=3.17734;AB=0.364486;ABP=54.2124;RUN=1;RPP=6.14687;RPPR=4.14646;RPL=52.0;RPR=65.0;EPP=5.25601;EPPR=3.07081;DPRA=2.675;ODDS=75.7934;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974359;PAIREDR=0.990712;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.357;Dels=0.0;FS=0.43;HaplotypeScore=7.8234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.153;QD=12.29;ReadPosRankSum=-0.222;SOR=0.64	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.563:116:120:4510:0:0:0.0,-32.4907,-405.88:0:0:116:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:119.7815:318:203:7696:117:4445:-313.162,0.0,-605.603:116:37:317:194,111:38.0:0.364:2:3937,0,7529:.:1:1:.:.:1:-0.0302105
chr12	57911615	.	C	CT	275.439	REJECT	NS=2;DP=142;DPB=192.833;AC=2;AN=3;AF=0.25;RO=77;AO=23;PRO=24.8;PAO=22.8;QR=2736;QA=665;PQR=870.65;PQA=803.65;SRF=17;SRR=60;SAF=6;SAR=17;SRP=55.1538;SAP=14.4341;AB=0.161972;ABP=143.942;RUN=1;RPP=3.86001;RPPR=9.35551;RPL=10.0;RPR=13.0;EPP=3.86001;EPPR=5.29458;DPRA=0.0;ODDS=2.86684;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=4;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=59.7403;PAIRED=1.0;PAIREDR=0.974026;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.968;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-1.292;QD=1.44;RPA=13,14;RU=T;ReadPosRankSum=-0.045;SOR=0.569;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.909:41:27:944:4:110:-3.66676,-2.16384,-78.8467:4:10:39:.:.:.:.:1:.:.:.:-0.00355946	0/1:106.686:136:50:1792:19:555:-30.7181,0.0,-148.078:24:24:97:72,29:283,0,1210:.:1:1:.:.:.:-0.0302105
chr12	57911615	.	C	CTT	275.439	REJECT	NS=2;DP=142;DPB=192.833;AC=2;AN=2;AF=0.0;RO=77;AO=6;PRO=24.8;PAO=22.8;QR=2736;QA=181;PQR=870.65;PQA=803.65;SRF=17;SRR=60;SAF=2;SAR=4;SRP=55.1538;SAP=4.45795;AB=0.0594059;ABP=173.31;RUN=1;RPP=4.45795;RPPR=9.35551;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=5.29458;DPRA=0.0;ODDS=2.86684;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=4;MEANALT=9.0;LEN=2;MQM=60.0;MQMR=59.7403;PAIRED=1.0;PAIREDR=0.974026;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.909:41:27:944:0:0:-3.66676,-10.9891,-88.7326:0:0:39:.:.:1:.:.:.:-0.00355946	./1:114.372:101:50:1792:6:181:-30.7181,-30.1436,-181.702:6:6:93:.:.:1:.:.:.:-0.0302105
chr12	57911615	.	CT	C	275.439	REJECT	NS=2;DP=142;DPB=192.833;AC=2;AN=3;AF=0.25;RO=77;AO=19;PRO=24.8;PAO=21.8;QR=2736;QA=560;PQR=870.65;PQA=764.65;SRF=17;SRR=60;SAF=4;SAR=15;SRP=55.1538;SAP=16.8392;AB=0.133803;ABP=168.409;RUN=1;RPP=8.61041;RPPR=9.35551;RPL=13.0;RPR=6.0;EPP=4.03889;EPPR=5.29458;DPRA=0.0;ODDS=2.86684;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=4;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=59.7403;PAIRED=0.947368;PAIREDR=0.974026;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.909:41:27:944:5:146:-3.66676,0.0,-85.3195:5:13:39:.:.:1:.:.:.:-0.00355946	./1:114.372:101:50:1792:14:414:-30.7181,-11.7214,-235.887:14:15:93:.:.:1:.:.:.:-0.0302105
chr12	57911615	.	CTT	C	275.439	REJECT	NS=2;DP=142;DPB=192.833;AC=2;AN=2;AF=0.0;RO=77;AO=7;PRO=24.8;PAO=18.8;QR=2736;QA=169;PQR=870.65;PQA=654.4;SRF=17;SRR=60;SAF=2;SAR=5;SRP=55.1538;SAP=5.80219;AB=0.0492958;ABP=253.555;RUN=1;RPP=3.32051;RPPR=9.35551;RPL=4.0;RPR=3.0;EPP=5.80219;EPPR=5.29458;DPRA=0.0;ODDS=2.86684;GTI=0;TYPE=del;CIGAR=1M2D15M;NUMALT=4;MEANALT=7.0;LEN=2;MQM=60.0;MQMR=59.7403;PAIRED=1.0;PAIREDR=0.974026;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.909:41:27:944:3:44:-3.66676,-8.65013,-94.9024:3:8:39:.:.:1:.:.:.:-0.00355946	./1:114.372:101:50:1792:4:125:-30.7181,-45.4826,-320.74:4:4:93:.:.:1:.:.:.:-0.0302105
chr12	57912556	.	T	C	978.885	PASS	SOMATIC;NS=2;DP=145;DPB=145.0;AC=1;AN=3;AF=0.25;RO=105;AO=40;PRO=0.0;PAO=0.0;QR=4038;QA=1520;PQR=0.0;PQA=0.0;SRF=30;SRR=75;SAF=8;SAR=32;SRP=44.8887;SAP=34.2795;AB=0.357143;ABP=22.8638;RUN=1;RPP=4.96463;RPPR=3.52732;RPL=23.0;RPR=17.0;EPP=8.43898;EPPR=20.4028;DPRA=3.39394;ODDS=21.6094;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980952;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.908;Dels=0.0;FS=4.32;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.483;QD=12.02;ReadPosRankSum=-0.331;SOR=1.226	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:93.8483:33:33:1259:0:0:0.0,-8.95886,-113.576:0:0:33:33,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:121.7135:112:72:2779:40:1520:-106.449,0.0,-219.762:40:36:112:72,40:38.0:0.357:2:1374,0,2785:.:1:1:.:.:1:-0.0302105
chr12	58053029	.	T	C	5493.295	REJECT	NS=2;DP=372;DPB=432.0;AC=2;AN=4;AF=0.5;RO=229;AO=203;PRO=0.0;PAO=0.0;QR=8787;QA=7614;PQR=0.0;PQA=0.0;SRF=95;SRR=134;SAF=88;SAR=115;SRP=17.433;SAP=10.8083;AB=0.469907;ABP=6.40825;RUN=1;RPP=3.021;RPPR=17.433;RPL=102.0;RPR=101.0;EPP=5.4171;EPPR=3.47494;DPRA=0.0;ODDS=322.658;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995074;PAIREDR=0.9869;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.456;Dels=0.0;FS=1.4575;HaplotypeScore=7.7654;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.353;QD=15.955;ReadPosRankSum=-0.184;SOR=0.572;ClippingRankSum=-0.4	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:64:2488:52:1919:-141.281,0.0,-192.49:51:45:113:61,50:1663,0,2172:1:.:1:.:.:.:-0.00355946	0/1:129.501:314:165:6299:151:5695:-426.679,0.0,-481.023:151:48:314:162,151:5406,0,5956:.:1:1:.:.:.:-0.0302105
chr12	58056701	.	T	G	1191.33	REJECT	NS=1;DP=86;DPB=86.0;AC=1;AN=4;AF=0.5;RO=41;AO=45;PRO=0.0;PAO=0.0;QR=1561;QA=1674;PQR=0.0;PQA=0.0;SRF=23;SRR=18;SAF=29;SAR=16;SRP=4.33437;SAP=11.1654;AB=0.523256;ABP=3.41429;RUN=1;RPP=11.1654;RPPR=5.60547;RPL=16.0;RPR=29.0;EPP=20.4303;EPPR=11.961;DPRA=0.0;ODDS=256.112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.7778;MQMR=59.7317;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-1.363;FS=2.957;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-0.413;QD=17.71;ReadPosRankSum=-0.493;SOR=1.067;ClippingRankSum=-1.722	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.85:85:41:1561:45:1674:-127.288,0.0,-117.221:45:53:85:39,45:1516,0,1392:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	58056763	.	C	T	1594.88	REJECT	NS=1;DP=115;DPB=115.0;AC=1;AN=4;AF=0.5;RO=59;AO=56;PRO=0.0;PAO=0.0;QR=2271;QA=2199;PQR=0.0;PQA=0.0;SRF=21;SRR=38;SAF=16;SAR=40;SRP=13.6468;SAP=25.3454;AB=0.486957;ABP=3.18024;RUN=1;RPP=3.0103;RPPR=9.23028;RPL=28.0;RPR=28.0;EPP=3.63072;EPPR=4.81373;DPRA=0.0;ODDS=367.235;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982143;PAIREDR=0.983051;technology.ILLUMINA=1.0;BaseQRankSum=1.189;FS=3.74;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.304;QD=17.04;ReadPosRankSum=0.18;SOR=1.068;ClippingRankSum=2.127	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.522:113:59:2271:56:2199:-166.735,0.0,-173.214:55:49:113:57,54:1920,0,2055:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	58061580	.	C	T	480.937	REJECT	NS=2;DP=152;DPB=201.143;AC=2;AN=2;AF=0.0;RO=70;AO=9;PRO=35.0;PAO=0.0;QR=2537;QA=117;PQR=1247.92;PQA=0.0;SRF=21;SRR=49;SAF=0;SAR=9;SRP=27.3308;SAP=22.5536;AB=0.0592105;ABP=259.53;RUN=1;RPP=5.18177;RPPR=63.067;RPL=6.0;RPR=3.0;EPP=5.18177;EPPR=6.1124;DPRA=0.0;ODDS=16.8846;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=57.7778;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:71.412:37:17:619:3:42:-9.16176,-27.8956,-263.352:3:9:32:.:.:1:.:.:.:-0.00355946	./1:132.909:115:53:1918:6:75:-46.2467,-122.675,-1017.96:6:6:99:.:.:1:.:.:.:-0.0302105
chr12	58061580	.	C	CT	480.937	REJECT	NS=2;DP=152;DPB=201.143;AC=2;AN=2;AF=0.0;RO=70;AO=12;PRO=35.0;PAO=26.0;QR=2537;QA=317;PQR=1247.92;PQA=906.917;SRF=21;SRR=49;SAF=3;SAR=9;SRP=27.3308;SAP=9.52472;AB=0.0789474;ABP=237.072;RUN=1;RPP=14.5915;RPPR=63.067;RPL=10.0;RPR=2.0;EPP=3.73412;EPPR=6.1124;DPRA=0.0;ODDS=16.8846;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:71.412:37:17:619:2:49:-9.16176,-7.47163,-66.588:2:6:32:.:.:1:.:.:.:-0.00355946	./1:132.909:115:53:1918:10:268:-46.2467,-38.8462,-219.856:10:10:99:.:.:1:.:.:.:-0.0302105
chr12	58061580	.	CT	C	480.937	REJECT	NS=2;DP=152;DPB=201.143;AC=2;AN=4;AF=0.5;RO=70;AO=32;PRO=35.0;PAO=21.0;QR=2537;QA=938;PQR=1247.92;PQA=759.917;SRF=21;SRR=49;SAF=11;SAR=21;SRP=27.3308;SAP=9.79615;AB=0.210526;ABP=113.641;RUN=1;RPP=20.3821;RPPR=63.067;RPL=24.0;RPR=8.0;EPP=3.28173;EPPR=6.1124;DPRA=0.0;ODDS=16.8846;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=59.9375;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.966;FS=9.7;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.673;QD=1.44;ReadPosRankSum=-0.542;SOR=2.712;ClippingRankSum=-0.118	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:85.206:35:17:619:7:165:-9.16176,0.0,-74.534:8:24:33:25,9:105,0,481:1:.:1:.:.:.:-0.00355946	0/1:132.909:115:53:1918:25:773:-46.2467,0.0,-208.353:25:25:99:.:.:.:.:1:.:.:.:-0.0302105
chr12	58061580	.	CTT	C	480.937	REJECT	NS=2;DP=152;DPB=201.143;AC=2;AN=2;AF=0.0;RO=70;AO=8;PRO=35.0;PAO=16.0;QR=2537;QA=196;PQR=1247.92;PQA=575.25;SRF=21;SRR=49;SAF=1;SAR=7;SRP=27.3308;SAP=12.7819;AB=0.0526316;ABP=267.244;RUN=1;RPP=7.35324;RPPR=63.067;RPL=6.0;RPR=2.0;EPP=4.09604;EPPR=6.1124;DPRA=0.0;ODDS=16.8846;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=4;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:71.412:37:17:619:3:70:-9.16176,-12.3482,-104.7:3:9:32:.:.:1:.:.:.:-0.00355946	./1:132.909:115:53:1918:5:126:-46.2467,-61.4603,-340.48:5:5:99:.:.:1:.:.:.:-0.0302105
chr12	58064737	.	A	C	5522.88	REJECT	NS=2;DP=379;DPB=425.0;AC=2;AN=4;AF=0.5;RO=224;AO=201;PRO=0.0;PAO=0.0;QR=8690;QA=7545;PQR=0.0;PQA=0.0;SRF=94;SRR=130;SAF=95;SAR=106;SRP=15.5738;SAP=4.3175;AB=0.472941;ABP=5.71314;RUN=1;RPP=22.9857;RPPR=4.40625;RPL=122.0;RPR=79.0;EPP=8.72527;EPPR=10.6105;DPRA=0.0;ODDS=300.403;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995536;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.195;Dels=0.0;FS=4.005;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.078;QD=16.715;ReadPosRankSum=1.277;SOR=0.442;ClippingRankSum=-0.119	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.032:89:45:1736:45:1717:-130.17,0.0,-131.879:44:49:89:45,44:1539,0,1576:1:.:1:.:.:.:-0.00355946	0/1:120.032:334:179:6954:156:5828:-433.483,0.0,-534.747:156:47:334:178,156:5525,0,6737:.:1:1:.:.:.:-0.0302105
chr12	58242545	.	T	G	6491.885	REJECT	NS=2;DP=390;DPB=443.0;AC=2;AN=4;AF=0.5;RO=209;AO=233;PRO=0.0;PAO=0.0;QR=8022;QA=8868;PQR=0.0;PQA=0.0;SRF=100;SRR=109;SAF=132;SAR=101;SRP=3.85188;SAP=11.9665;AB=0.525959;ABP=5.60332;RUN=1;RPP=3.01962;RPPR=3.5194;RPL=117.0;RPR=116.0;EPP=7.12025;EPPR=3.5194;DPRA=0.0;ODDS=261.365;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985646;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1035;Dels=0.0;FS=8.497;HaplotypeScore=18.5192;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.139;QD=20.04;ReadPosRankSum=-0.012;SOR=0.732;ClippingRankSum=0.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:41:1581:64:2360:-183.971,0.0,-113.882:63:61:103:38,63:2222,0,1265:1:.:1:.:.:.:-0.00355946	0/1:129.501:338:168:6441:169:6508:-494.081,0.0,-488.023:169:50:337:168,169:6306,0,6193:.:1:1:.:.:.:-0.0302105
chr12	58242849	.	T	C	6164.42	REJECT	NS=2;DP=382;DPB=434.0;AC=2;AN=4;AF=0.5;RO=213;AO=221;PRO=0.0;PAO=0.0;QR=8080;QA=8450;PQR=0.0;PQA=0.0;SRF=104;SRR=109;SAF=116;SAR=105;SRP=3.26517;SAP=4.19921;AB=0.509217;ABP=3.33052;RUN=1;RPP=3.49176;RPPR=10.4422;RPL=107.0;RPR=114.0;EPP=47.1177;EPPR=27.4878;DPRA=0.0;ODDS=290.867;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995305;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.666;Dels=0.0;FS=6.5465;HaplotypeScore=5.8795;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.211;QD=18.75;ReadPosRankSum=-0.3455;SOR=0.7905;ClippingRankSum=0.165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6455:102:46:1727:56:2167:-167.405,0.0,-127.808:56:55:102:46,56:2001,0,1564:1:.:1:.:.:.:-0.00355946	0/1:118.6455:331:167:6353:165:6283:-475.242,0.0,-481.505:165:50:331:166,165:6038,0,6031:.:1:1:.:.:.:-0.0302105
chr12	58244630	.	C	T	5337.475	REJECT	NS=2;DP=329;DPB=376.0;AC=2;AN=4;AF=0.5;RO=182;AO=194;PRO=0.0;PAO=0.0;QR=6771;QA=7422;PQR=0.0;PQA=0.0;SRF=89;SRR=93;SAF=94;SAR=100;SRP=3.2012;SAP=3.41325;AB=0.515957;ABP=3.84193;RUN=1;RPP=14.4721;RPPR=4.72839;RPL=81.0;RPR=113.0;EPP=7.48756;EPPR=6.876;DPRA=0.0;ODDS=219.223;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.962;Dels=0.0;FS=1.578;HaplotypeScore=5.8657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2075;QD=19.79;ReadPosRankSum=-0.849;SOR=0.8455;ClippingRankSum=-1.273	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:37:1343:56:2092:-163.16,0.0,-95.6946:55:59:92:37,54:1993,0,1102:1:.:1:.:.:.:-0.00355946	0/1:129.501:283:145:5428:138:5330:-402.818,0.0,-411.607:138:49:283:145,138:5120,0,5171:.:1:1:.:.:.:-0.0302105
chr12	66232383	.	T	TG	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:81,0:81:0.160494,0.0:60.0,0.0:38.6333,0.0:0.0,0.0:0,0:0,0:21,60,0,0:0:0:81:.:.:.:.:0:.:-0.00355946	0/1:136,83:219:0.125,0.0843373:60.0,57.8313:38.9485,38.8224:0.0,0.0:36,19:63,19:32,104,21,59:83:38:219:.:.:.:.:1:.:-0.0302105
chr12	66308644	.	A	G	444.102	REJECT	NS=1;DP=36;DPB=36.0;AC=1;AN=4;AF=0.5;RO=16;AO=20;PRO=0.0;PAO=0.0;QR=599;QA=743;PQR=0.0;PQA=0.0;SRF=16;SRR=0;SAF=20;SAR=0;SRP=37.7539;SAP=46.4397;AB=0.555556;ABP=3.9754;RUN=1;RPP=6.91895;RPPR=16.582;RPL=7.0;RPR=13.0;EPP=6.91895;EPPR=16.582;DPRA=0.0;ODDS=76.1368;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=44.75;MQMR=57.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.783;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=50.94;MQRankSum=-3.75;QD=19.79;ReadPosRankSum=0.35;SOR=1.002;ClippingRankSum=1.783	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.485:35:16:599:20:743:-54.6932,0.0,-44.0189:20:56:35:15,20:721,0,515:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	66308656	.	T	C	529.895	REJECT	NS=1;DP=42;DPB=42.0;AC=1;AN=4;AF=0.5;RO=19;AO=23;PRO=0.0;PAO=0.0;QR=716;QA=867;PQR=0.0;PQA=0.0;SRF=19;SRR=0;SAF=23;SAR=0;SRP=44.2683;SAP=52.9542;AB=0.547619;ABP=3.83753;RUN=1;RPP=5.3706;RPPR=22.325;RPL=9.0;RPR=14.0;EPP=5.3706;EPPR=22.325;DPRA=0.0;ODDS=90.8007;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=48.087;MQMR=56.8421;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.25;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=52.64;MQRankSum=-1.852;QD=20.12;ReadPosRankSum=-0.591;SOR=0.954;ClippingRankSum=-1.721	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.2525:41:19:716:23:867:-63.9359,0.0,-52.6203:23:55:41:18,23:853,0,628:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	69108909	.	T	C	2063.29	REJECT	NS=2;DP=390;DPB=439.0;AC=2;AN=4;AF=0.5;RO=333;AO=105;PRO=0.0;PAO=0.0;QR=12918;QA=4017;PQR=0.0;PQA=0.0;SRF=135;SRR=198;SAF=42;SAR=63;SRP=28.8919;SAP=12.1305;AB=0.23918;ABP=262.405;RUN=1;RPP=7.66346;RPPR=10.9984;RPL=45.0;RPR=60.0;EPP=22.8844;EPPR=18.6671;DPRA=0.0;ODDS=173.593;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.961905;PAIREDR=0.996997;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5585;Dels=0.0;FS=1.8265;HaplotypeScore=9.8405;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7825;QD=10.94;ReadPosRankSum=0.476;SOR=0.6845;ClippingRankSum=-0.894	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:42:1615:55:2128:-165.267,0.0,-119.074:53:56:95:42,52:1817,0,1404:1:.:1:.:.:.:-0.00355946	0/1:129.501:341:291:11303:50:1889:-77.5139,0.0,-924.259:50:15:340:290,50:1135,0,11623:.:1:1:.:.:.:-0.0302105
chr12	69115255	.	A	G	5569.025	REJECT	NS=2;DP=369;DPB=432.0;AC=2;AN=4;AF=0.5;RO=228;AO=204;PRO=0.0;PAO=0.0;QR=8924;QA=7725;PQR=0.0;PQA=0.0;SRF=117;SRR=111;SAF=109;SAR=95;SRP=3.35316;SAP=5.09662;AB=0.472222;ABP=5.9056;RUN=1;RPP=3.3935;RPPR=7.61992;RPL=105.0;RPR=99.0;EPP=11.3556;EPPR=18.2487;DPRA=0.0;ODDS=326.317;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990196;PAIREDR=0.995614;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.449;Dels=0.0;FS=0.9365;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.693;QD=15.535;ReadPosRankSum=0.409;SOR=0.805;ClippingRankSum=-0.795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:71:2777:52:1959:-142.959,0.0,-216.586:52:42:122:70,52:1660,0,2473:1:.:1:.:.:.:-0.00355946	0/1:129.501:308:157:6147:152:5766:-434.909,0.0,-469.221:151:49:308:156,151:5459,0,5942:.:1:1:.:.:.:-0.0302105
chr12	69119617	.	G	T	177.029	REJECT	NS=1;DP=19;DPB=43.4348;AC=0;AN=4;AF=0.0;RO=0;AO=6;PRO=19.5;PAO=4.5;QR=0;QA=174;PQR=690.667;PQA=127.667;SRF=0;SRR=0;SAF=0;SAR=6;SRP=0.0;SAP=16.0391;AB=0.0;ABP=0.0;RUN=1;RPP=16.0391;RPPR=0.0;RPL=6.0;RPR=0.0;EPP=16.0391;EPPR=0.0;DPRA=0.0;ODDS=9.50877;GTI=0;TYPE=snp;CIGAR=1X22M;NUMALT=2;MEANALT=10.0;LEN=1;MQM=47.5;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:41.2964:19:0:0:6:174:-19.5193,-17.3211,-205.149:6:55:11:.:.:.:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0302105
chr12	69119617	.	G	GTT	177.029	REJECT	NS=1;DP=19;DPB=43.4348;AC=1;AN=3;AF=1.0;RO=0;AO=5;PRO=19.5;PAO=21.0;QR=0;QA=123;PQR=690.667;PQA=739.667;SRF=0;SRR=0;SAF=2;SAR=3;SRP=0.0;SAP=3.44459;AB=0.0;ABP=0.0;RUN=1;RPP=6.91895;RPPR=0.0;RPL=4.0;RPR=1.0;EPP=3.44459;EPPR=0.0;DPRA=0.0;ODDS=9.50877;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=2;MEANALT=10.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=64.34;QD=19.83;SOR=1.04	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:70.1482:29:0:0:5:123:-19.5193,-2.12961,0.0:6:33:25:0,8:1326,958,899:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	69119617	.	G	GGTTT	1288.73	PASS	DP=65;AC=1;AN=3;AF=0.5;SPLITMULTIALLELIC;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=64.34;QD=19.83;SOR=1.04	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0,31:39:99.0:1326,201,677:31:79:39:1:.:.:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0302105
chr12	69202326	.	C	T	7105.77	REJECT	NS=2;DP=270;DPB=306.0;AC=2;AN=4;AF=0.5;RO=68;AO=238;PRO=0.0;PAO=0.0;QR=2578;QA=9052;PQR=0.0;PQA=0.0;SRF=30;SRR=38;SAF=69;SAR=169;SRP=5.05404;SAP=94.2486;AB=0.777778;ABP=208.094;RUN=1;RPP=55.7096;RPPR=13.3567;RPL=157.0;RPR=81.0;EPP=3.92268;EPPR=6.20364;DPRA=0.0;ODDS=112.358;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987395;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8895;Dels=0.0;FS=12.449;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1465;QD=25.8;ReadPosRankSum=0.7435;SOR=1.8225;ClippingRankSum=-1.082	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:35:1317:37:1405:-107.004,0.0,-99.0916:37:51:72:35,37:1341,0,1201:1:.:1:.:.:.:-0.00355946	0/1:129.501:234:33:1261:201:7647:-624.537,0.0,-50.0609:201:86:234:33,201:7837,0,691:.:1:1:.:.:.:-0.0302105
chr12	69214081	.	A	AT	439.205	REJECT	NS=2;DP=235;DPB=299.2;AC=2;AN=3;AF=0.25;RO=152;AO=30;PRO=55.5;PAO=44.5;QR=5521;QA=1061;PQR=1932.17;PQA=1509.17;SRF=112;SRR=40;SAF=24;SAR=6;SRP=77.0689;SAP=26.4622;AB=0.12766;ABP=285.995;RUN=1;RPP=4.16842;RPPR=41.6397;RPL=13.0;RPR=17.0;EPP=4.16842;EPPR=8.7247;DPRA=0.0;ODDS=12.6985;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=59.8684;PAIRED=1.0;PAIREDR=0.980263;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.149:56:36:1315:7:238:-16.5219,-7.38485,-119.92:7:13:53:.:.:1:.:.:.:-0.00355946	0/1:89.2195:179:116:4206:23:823:-36.7321,0.0,-373.157:23:14:161:.:.:1:.:.:.:-0.0302105
chr12	69214081	.	AT	A	439.205	REJECT	NS=2;DP=235;DPB=299.2;AC=2;AN=3;AF=0.25;RO=152;AO=32;PRO=55.5;PAO=41.0;QR=5521;QA=1103;PQR=1932.17;PQA=1399.67;SRF=112;SRR=40;SAF=24;SAR=8;SRP=77.0689;SAP=20.3821;AB=0.13617;ABP=273.206;RUN=1;RPP=35.8538;RPPR=41.6397;RPL=5.0;RPR=27.0;EPP=5.45321;EPPR=8.7247;DPRA=0.0;ODDS=12.6985;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=59.8684;PAIRED=0.96875;PAIREDR=0.980263;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55.149:56:36:1315:10:328:-16.5219,0.0,-111.612:10:19:53:.:.:1:.:.:.:-0.00355946	./1:89.2195:179:116:4206:22:775:-36.7321,-7.92225,-412.653:22:14:161:.:.:1:.:.:.:-0.0302105
chr12	69967862	.	G	A	6273.24	REJECT	NS=2;DP=282;DPB=320.0;AC=3;AN=4;AF=0.75;RO=94;AO=225;PRO=0.0;PAO=0.0;QR=3538;QA=8551;PQR=0.0;PQA=0.0;SRF=54;SRR=40;SAF=149;SAR=76;SRP=7.53805;SAP=54.4404;AB=0.614754;ABP=30.9191;RUN=1;RPP=3.79203;RPPR=4.48875;RPL=108.0;RPR=117.0;EPP=4.17807;EPPR=8.9241;DPRA=0.0;ODDS=47.7535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991111;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.745;Dels=0.0;FS=2.312;HaplotypeScore=3.8882;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.307;QD=26.79;ReadPosRankSum=0.116;SOR=1.439	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:75:0:0:75:2852:-256.788,-20.3131,0.0:75:100:75:0,75:3046,224,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:244:94:3538:150:5699:-446.59,0.0,-252.195:150:61:244:94,150:5652,0,3225:.:1:1:.:.:.:-0.0302105
chr12	70915347	.	A	G	9541.985	REJECT	NS=2;DP=258;DPB=296.0;AC=4;AN=4;AF=1.0;RO=0;AO=296;PRO=0.0;PAO=0.0;QR=0;QA=11184;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=88;SAR=208;SRP=0.0;SAP=108.649;AB=0.0;ABP=0.0;RUN=1;RPP=119.478;RPPR=0.0;RPL=211.0;RPR=85.0;EPP=3.2744;EPPR=0.0;DPRA=0.0;ODDS=51.6731;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993243;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.965;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=24.98;SOR=1.9625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:74:0:0:76:2820:-253.896,-20.5663,0.0:74:100:74:0,73:2964,218,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:220:0:0:220:8364:-752.371,-59.5449,0.0:220:100:220:0,220:9318,647,0:.:1:1:.:.:.:-0.0302105
chr12	70928616	.	G	A	2544.565	REJECT	NS=2;DP=363;DPB=416.0;AC=2;AN=4;AF=0.5;RO=296;AO=120;PRO=0.0;PAO=0.0;QR=11294;QA=4565;PQR=0.0;PQA=0.0;SRF=169;SRR=127;SAF=67;SAR=53;SRP=15.9511;SAP=6.55704;AB=0.288462;ABP=164.701;RUN=1;RPP=11.7686;RPPR=3.12768;RPL=71.0;RPR=49.0;EPP=13.4334;EPPR=3.03964;DPRA=0.0;ODDS=261.816;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.172;Dels=0.0;FS=1.0665;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0475;QD=13.01;ReadPosRankSum=-0.4675;SOR=0.7635;ClippingRankSum=1.03	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1955:104:43:1642:62:2343:-182.445,0.0,-119.35:61:59:104:43,61:2216,0,1486:1:.:1:.:.:.:-0.00355946	0/1:118.1955:311:253:9652:58:2222:-115.674,0.0,-783.929:58:19:311:253,58:1578,0,9839:.:1:1:.:.:.:-0.0302105
chr12	70928724	.	A	G	10189.885	REJECT	NS=2;DP=274;DPB=315.0;AC=4;AN=4;AF=1.0;RO=0;AO=315;PRO=0.0;PAO=0.0;QR=0;QA=11953;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=75;SAR=240;SRP=0.0;SAP=190.688;AB=0.0;ABP=0.0;RUN=1;RPP=25.4075;RPPR=0.0;RPL=186.0;RPR=129.0;EPP=5.00254;EPPR=0.0;DPRA=0.0;ODDS=53.6341;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987302;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9644;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.475;SOR=2.4015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.047:79:0:0:79:3022:-272.102,-21.4179,0.0:79:100:79:0,79:3338,237,0:1:.:1:.:.:.:-0.00355946	1/1:122.047:235:0:0:236:8931:-803.354,-63.8812,0.0:235:100:235:0,234:9915,689,0:.:1:1:.:.:.:-0.0302105
chr12	70933687	.	A	G	10448.5	REJECT	NS=2;DP=373;DPB=430.0;AC=2;AN=4;AF=0.5;RO=94;AO=334;PRO=0.0;PAO=0.0;QR=3635;QA=12979;PQR=0.0;PQA=0.0;SRF=34;SRR=60;SAF=160;SAR=174;SRP=18.6264;SAP=4.28458;AB=0.776744;ABP=289.059;RUN=1;RPP=5.11676;RPPR=3.37991;RPL=158.0;RPR=176.0;EPP=3.03631;EPPR=4.48875;DPRA=0.0;ODDS=173.459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991018;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0695;Dels=0.0;FS=9.8815;HaplotypeScore=9.8222;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.348;QD=26.59;ReadPosRankSum=0.7475;SOR=0.4355;ClippingRankSum=-0.272	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:47:1816:64:2498:-194.74,0.0,-133.35:63:57:110:47,63:2157,0,1616:1:.:1:.:.:.:-0.00355946	0/1:129.501:317:47:1819:270:10481:-856.827,0.0,-77.7234:269:85:316:47,268:10717,0,1080:.:1:1:.:.:.:-0.0302105
chr12	70938279	.	AGAG	A	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:35,0:35:0.2,0.0:60.0,0.0:37.7914,0.0:0.0,0.0:0,0:0,0:23,12,0,0:0:0:35:.:.:.:.:0:.:-0.00355946	0/1:76,38:114:0.105263,0.157895:60.0,60.2632:38.1473,38.2686:0.0,0.0:81,8:19,8:58,18,31,7:38:33:114:.:.:.:.:1:.:-0.0302105
chr12	70949085	.	G	A	2029.78	PASS	SOMATIC;NS=2;DP=321;DPB=321.0;AC=1;AN=3;AF=0.25;RO=239;AO=82;PRO=0.0;PAO=0.0;QR=8947;QA=3063;PQR=0.0;PQA=0.0;SRF=74;SRR=165;SAF=30;SAR=52;SRP=78.2486;SAP=15.8273;AB=0.347458;ABP=50.7091;RUN=1;RPP=3.11623;RPPR=30.4944;RPL=42.0;RPR=40.0;EPP=26.8435;EPPR=3.23744;DPRA=2.77647;ODDS=54.057;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983264;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.978;Dels=0.0;FS=4.172;HaplotypeScore=7.7372;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.912;QD=11.45;ReadPosRankSum=-0.261;SOR=0.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.813:83:85:3216:0:0:0.0,-23.0507,-289.569:0:0:83:82,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:118.9065:236:154:5731:82:3063:-211.723,0.0,-451.646:82:35:236:149,78:37.0:0.341:2:2731,0,5651:.:1:1:.:.:1:-0.0302105
chr12	70953277	.	T	C	6566.725	REJECT	NS=2;DP=409;DPB=461.0;AC=2;AN=4;AF=0.5;RO=229;AO=232;PRO=0.0;PAO=0.0;QR=8800;QA=8769;PQR=0.0;PQA=0.0;SRF=117;SRR=112;SAF=124;SAR=108;SRP=3.24736;SAP=5.40641;AB=0.503254;ABP=3.05269;RUN=1;RPP=3.34725;RPPR=6.43345;RPL=119.0;RPR=113.0;EPP=3.04774;EPPR=8.93681;DPRA=0.0;ODDS=335.308;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.45;Dels=0.0;FS=0.6275;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0925;QD=17.635;ReadPosRankSum=-0.717;SOR=0.773;ClippingRankSum=-0.995	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6195:102:51:1946:53:1936:-146.084,0.0,-147.011:52:51:102:49,52:1735,0,1756:1:.:1:.:.:.:-0.00355946	0/1:119.6195:357:178:6854:179:6833:-517.905,0.0,-519.76:179:50:357:178,179:6586,0,6582:.:1:1:.:.:.:-0.0302105
chr12	70983895	.	A	C	2212.35	REJECT	NS=2;DP=363;DPB=422.0;AC=2;AN=4;AF=0.5;RO=321;AO=101;PRO=0.0;PAO=0.0;QR=12243;QA=3863;PQR=0.0;PQA=0.0;SRF=175;SRR=146;SAF=55;SAR=46;SRP=8.69942;SAP=4.75178;AB=0.239336;ABP=252.061;RUN=1;RPP=7.84774;RPPR=10.3771;RPL=58.0;RPR=43.0;EPP=3.2038;EPPR=10.3771;DPRA=0.0;ODDS=125.607;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=0.996885;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.787;Dels=0.0;FS=5.5885;HaplotypeScore=4.9314;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2545;QD=10.575;ReadPosRankSum=0.9045;SOR=0.8505;ClippingRankSum=0.781	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.23:116:56:2089:61:2331:-178.094,0.0,-156.313:60:52:116:55,60:2183,0,1855:1:.:1:.:.:.:-0.00355946	0/1:119.23:304:265:10154:40:1532:-55.1769,0.0,-830.725:40:13:304:264,40:811,0,10442:.:1:1:.:.:.:-0.0302105
chr12	70984019	.	C	T	1517.75	REJECT	NS=2;DP=300;DPB=343.0;AC=2;AN=4;AF=0.5;RO=264;AO=78;PRO=0.0;PAO=0.0;QR=10103;QA=2872;PQR=0.0;PQA=0.0;SRF=59;SRR=205;SAF=17;SAR=61;SRP=178.34;SAP=56.9074;AB=0.227405;ABP=224.393;RUN=1;RPP=31.5178;RPPR=53.0529;RPL=55.0;RPR=23.0;EPP=4.01252;EPPR=3.0103;DPRA=0.0;ODDS=59.0796;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996212;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3455;Dels=0.0;FS=2.208;HaplotypeScore=11.6315;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.9745;QD=10.75;ReadPosRankSum=-0.8425;SOR=0.836;ClippingRankSum=1.093	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:36:1370:49:1785:-137.667,0.0,-100.344:48:58:84:35,48:1666,0,1261:1:.:1:.:.:.:-0.00355946	0/1:129.501:258:228:8733:29:1087:-28.1786,0.0,-715.952:29:11:257:228,29:485,0,8996:.:1:1:.:.:.:-0.0302105
chr12	70988287	.	A	G	2002.41	REJECT	NS=2;DP=344;DPB=402.0;AC=2;AN=4;AF=0.5;RO=309;AO=91;PRO=0.0;PAO=0.0;QR=11878;QA=3527;PQR=0.0;PQA=0.0;SRF=177;SRR=132;SAF=55;SAR=36;SRP=17.2408;SAP=11.6246;AB=0.226368;ABP=264.451;RUN=1;RPP=3.60686;RPPR=4.19793;RPL=43.0;RPR=48.0;EPP=25.942;EPPR=34.5564;DPRA=0.0;ODDS=29.0858;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993528;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9335;Dels=0.0;FS=6.4165;HaplotypeScore=5.8904;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.061;QD=9.845;ReadPosRankSum=1.057;SOR=1.195;ClippingRankSum=-0.539	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3515:113:49:1864:65:2504:-194.461,0.0,-136.875:64:57:112:48,63:2110,0,1601:1:.:1:.:.:.:-0.00355946	0/1:112.422:286:260:10014:26:1023:-14.5473,0.0,-823.262:26:9:285:259,26:298,0,10304:.:1:1:.:.:.:-0.0302105
chr12	70989977	.	T	C	2568.48	PASS	SOMATIC;NS=2;DP=429;DPB=429.0;AC=1;AN=4;AF=0.25;RO=323;AO=106;PRO=0.0;PAO=0.0;QR=12177;QA=3939;PQR=0.0;PQA=0.0;SRF=149;SRR=174;SAF=47;SAR=59;SRP=7.21207;SAP=5.96022;AB=0.322981;ABP=90.6515;RUN=1;RPP=5.05886;RPPR=12.2138;RPL=58.0;RPR=48.0;EPP=5.96022;EPPR=7.91124;DPRA=0.0;ODDS=57.8237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990712;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.033;Dels=0.0;FS=0.0;HaplotypeScore=4.8152;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.071;QD=10.49;ReadPosRankSum=-0.146;SOR=0.692	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:156.816:107:105:3849:2:46:0.0,-24.7974,-342.269:2:2:107:.:.:.:.:0:.:.:.:-0.00355946	0/1:127.908:321:218:8328:104:3893:-262.958,0.0,-661.881:104:32:321:217,104:3397,0,8327:.:1:1:.:.:.:-0.0302105
chr12	70990054	.	T	C	6651.200000000001	REJECT	NS=2;DP=283;DPB=331.0;AC=3;AN=4;AF=0.75;RO=72;AO=258;PRO=0.0;PAO=0.0;QR=2606;QA=9189;PQR=0.0;PQA=0.0;SRF=31;SRR=41;SAF=98;SAR=160;SRP=6.02623;SAP=35.3636;AB=0.690678;ABP=77.5396;RUN=1;RPP=3.3133;RPPR=4.09604;RPL=126.0;RPR=132.0;EPP=3.85196;EPPR=3.49285;DPRA=0.0;ODDS=60.0919;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996124;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.745;Dels=0.0;FS=3.111;HaplotypeScore=8.7541;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.005;QD=28.345;ReadPosRankSum=0.076;SOR=1.0355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:95:3387:-304.846,-25.6716,0.0:92:100:92:0,90:3544,268,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:236:72:2606:163:5802:-458.374,0.0,-172.803:163:69:235:72,163:5790,0,2204:.:1:1:.:.:.:-0.0302105
chr12	70990120	.	T	TAC	2332.46	REJECT	NS=2;DP=139;DPB=179.964;AC=2;AN=2;AF=0.25;RO=20;AO=23;PRO=22.75;PAO=22.0833;QR=672;QA=474;PQR=807.25;PQA=751.25;SRF=4;SRR=16;SAF=0;SAR=23;SRP=18.6449;SAP=52.9542;AB=0.165468;ABP=138.126;RUN=1;RPP=24.253;RPPR=18.6449;RPL=19.0;RPR=4.0;EPP=24.253;EPPR=4.74748;DPRA=0.0;ODDS=4.32147;GTI=0;TYPE=ins;CIGAR=1M2I27M;NUMALT=3;MEANALT=21.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.956522;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.704;FS=4.313;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.698;QD=3.69;ReadPosRankSum=1.249;SOR=1.863;ClippingRankSum=0.243	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:58.9126:38:2:69:13:241:-114.054,-26.6553,-24.503:13:41:33:22,14:266,0,616:1:.:1:.:.:.:-0.00355946	./1:160.002:98:18:603:10:233:-135.527,-46.2638,-103.29:10:16:62:.:.:.:.:1:.:.:.:-0.0302105
chr12	70990135	.	A	AC	2332.46	REJECT	NS=2;DP=139;DPB=179.964;AC=2;AN=3;AF=0.5;RO=20;AO=40;PRO=22.75;PAO=22.0833;QR=672;QA=1147;PQR=807.25;PQA=751.25;SRF=4;SRR=16;SAF=10;SAR=30;SRP=18.6449;SAP=24.725;AB=0.28777;ABP=57.3908;RUN=1;RPP=16.9077;RPPR=18.6449;RPL=28.0;RPR=12.0;EPP=3.0103;EPPR=4.74748;DPRA=0.0;ODDS=4.32147;GTI=0;TYPE=ins;CIGAR=16M1I12M;NUMALT=3;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:18.8252:41:2:69:11:343:-114.054,-16.9285,-15.2506:11:37:30:.:.:1:.:.:.:-0.00355946	0/1:160.002:98:18:603:29:804:-135.527,0.0,-51.9499:29:47:62:.:.:1:.:.:.:-0.0302105
chr12	70990136	.	A	C	2332.46	REJECT	SOMATIC;NS=2;DP=139;DPB=179.964;AC=1;AN=3;AF=0.0;RO=20;AO=9;PRO=22.75;PAO=22.0833;QR=672;QA=330;PQR=807.25;PQA=751.25;SRF=4;SRR=16;SAF=1;SAR=8;SRP=18.6449;SAP=14.8328;AB=0.0647482;ABP=231.734;RUN=1;RPP=14.8328;RPPR=18.6449;RPL=8.0;RPR=1.0;EPP=9.04217;EPPR=4.74748;DPRA=0.0;ODDS=4.32147;GTI=0;TYPE=snp;CIGAR=16M1X11M;NUMALT=3;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:18.8252:41:2:69:4:145:-114.054,-32.8757,-33.065:4:13:30:.:.:.:.:.:.:-0.00355946	./1:160.002:98:18:603:5:185:-135.527,-49.2403,-107.571:5:8:62:.:.:1:.:.:.:-0.0302105
chr12	71002865	.	T	A	10549.9	REJECT	NS=2;DP=280;DPB=321.0;AC=4;AN=4;AF=1.0;RO=1;AO=319;PRO=0.0;PAO=0.0;QR=16;QA=12206;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=181;SAR=138;SRP=5.18177;SAP=15.5967;AB=0.0;ABP=0.0;RUN=1;RPP=3.56168;RPPR=5.18177;RPL=155.0;RPR=164.0;EPP=7.97269;EPPR=5.18177;DPRA=0.0;ODDS=54.8321;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990596;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.688;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.262;QD=29.59;ReadPosRankSum=-0.553;SOR=0.798	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:81:3027:-272.53,-21.9382,0.0:81:100:81:0,81:3219,242,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:239:1:16:238:9179:-824.23,-63.2919,0.0:237:100:238:1,237:10210,704,0:.:1:1:.:.:.:-0.0302105
chr12	71002893	.	C	T	12460.349999999999	REJECT	NS=2;DP=331;DPB=379.0;AC=4;AN=4;AF=1.0;RO=0;AO=378;PRO=0.0;PAO=0.0;QR=0;QA=14402;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=202;SAR=176;SRP=0.0;SAP=6.89367;AB=0.0;ABP=0.0;RUN=1;RPP=11.3056;RPPR=0.0;RPL=170.0;RPR=208.0;EPP=4.13625;EPPR=0.0;DPRA=0.0;ODDS=62.9646;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986772;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.97;SOR=0.801	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:94:3563:-320.737,-25.4701,0.0:93:100:93:0,93:3775,279,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:284:0:0:284:10839:-974.942,-76.9025,0.0:283:100:283:0,282:12047,837,0:.:1:1:.:.:.:-0.0302105
chr12	78007092	.	T	C	2697.01	PASS	SOMATIC;NS=2;DP=421;DPB=421.0;AC=1;AN=3;AF=0.25;RO=318;AO=103;PRO=0.0;PAO=0.0;QR=12372;QA=3986;PQR=0.0;PQA=0.0;SRF=193;SRR=125;SAF=50;SAR=53;SRP=34.5854;SAP=3.20004;AB=0.339934;ABP=70.4406;RUN=1;RPP=12.3076;RPPR=3.11956;RPL=41.0;RPR=62.0;EPP=9.10307;EPPR=5.22274;DPRA=2.5678;ODDS=74.617;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.996855;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.047;Dels=0.0;FS=10.533;HaplotypeScore=6.8293;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.056;QD=11.49;ReadPosRankSum=0.696;SOR=0.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.813:115:118:4589:0:0:0.0,-31.9798,-412.977:0:0:115:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:118.9065:302:200:7783:103:3986:-276.445,0.0,-617.948:102:34:302:195,98:39.0:0.331:2:3497,0,7781:.:1:1:.:.:1:-0.0302105
chr12	78225374	.	A	G	14648.05	REJECT	NS=2;DP=386;DPB=453.0;AC=4;AN=4;AF=1.0;RO=1;AO=452;PRO=0.0;PAO=0.0;QR=39;QA=17452;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=218;SAR=234;SRP=5.18177;SAP=4.24016;AB=0.0;ABP=0.0;RUN=1;RPP=4.56684;RPPR=5.18177;RPL=217.0;RPR=235.0;EPP=3.18325;EPPR=5.18177;DPRA=0.0;ODDS=86.6912;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995575;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.779;Dels=0.0;FS=0.0;HaplotypeScore=5.9322;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.043;QD=30.69;ReadPosRankSum=-1.537;SOR=0.507	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.3745:131:0:0:132:5115:-460.287,-35.7744,0.0:131:100:131:0,130:5542,391,0:1:.:1:.:.:.:-0.00355946	1/1:123.3745:320:1:39:320:12337:-1106.11,-83.4272,0.0:319:100:320:1,319:13697,907,0:.:1:1:.:.:.:-0.0302105
chr12	78334194	.	A	G	10033.8	REJECT	NS=2;DP=374;DPB=422.0;AC=2;AN=4;AF=0.5;RO=97;AO=325;PRO=0.0;PAO=0.0;QR=3712;QA=12498;PQR=0.0;PQA=0.0;SRF=47;SRR=50;SAF=164;SAR=161;SRP=3.21178;SAP=3.07043;AB=0.770142;ABP=270.503;RUN=1;RPP=7.88108;RPPR=8.04722;RPL=149.0;RPR=176.0;EPP=3.81876;EPPR=4.82359;DPRA=0.0;ODDS=168.037;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993846;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1315;Dels=0.0;FS=2.6135;HaplotypeScore=6.8322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.737;QD=25.015;ReadPosRankSum=0.849;SOR=0.9045;ClippingRankSum=1.093	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:51:1909:43:1693:-127.308,0.0,-146.359:42:46:93:50,42:1539,0,1733:1:.:1:.:.:.:-0.00355946	0/1:129.501:327:46:1803:282:10805:-883.01,0.0,-73.3237:281:86:327:46,281:11077,0,1047:.:1:1:.:.:.:-0.0302105
chr12	78530979	.	G	A	9826.21	REJECT	NS=2;DP=380;DPB=432.0;AC=2;AN=4;AF=0.5;RO=106;AO=325;PRO=0.0;PAO=0.0;QR=4086;QA=12328;PQR=0.0;PQA=0.0;SRF=59;SRR=47;SAF=182;SAR=143;SRP=5.96022;SAP=13.1728;AB=0.752315;ABP=241.892;RUN=1;RPP=11.1951;RPPR=3.09224;RPL=180.0;RPR=145.0;EPP=16.5402;EPPR=3.33807;DPRA=0.0;ODDS=142.713;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.097;Dels=0.0;FS=17.457;HaplotypeScore=4.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2455;QD=23.16;ReadPosRankSum=-0.0985;SOR=1.165;ClippingRankSum=-0.29	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:63:2401:40:1446:-102.246,0.0,-188.232:39:39:101:60,39:1249,0,2224:1:.:1:.:.:.:-0.00355946	0/1:129.501:328:43:1685:285:10882:-889.926,0.0,-62.7395:285:87:328:43,285:11176,0,918:.:1:1:.:.:.:-0.0302105
chr12	78537016	.	A	T	2448.885	REJECT	NS=2;DP=366;DPB=426.0;AC=2;AN=4;AF=0.5;RO=313;AO=113;PRO=0.0;PAO=0.0;QR=12097;QA=4352;PQR=0.0;PQA=0.0;SRF=185;SRR=128;SAF=82;SAR=31;SRP=25.5506;SAP=52.9926;AB=0.265258;ABP=206.904;RUN=1;RPP=56.9896;RPPR=161.195;RPL=30.0;RPR=83.0;EPP=9.94748;EPPR=6.06979;DPRA=0.0;ODDS=163.439;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.996805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.236;Dels=0.0;FS=8.757;HaplotypeScore=4.9322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0755;QD=11.685;ReadPosRankSum=1.1555;SOR=1.3805;ClippingRankSum=-0.526	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.6805:117:53:2018:66:2547:-196.987,0.0,-149.358:65:55:117:51,64:2335,0,1798:1:.:1:.:.:.:-0.00355946	0/1:121.6805:306:260:10079:47:1805:-79.1778,0.0,-823.401:47:15:306:259,47:1094,0,10339:.:1:1:.:.:.:-0.0302105
chr12	78537138	.	C	CGGT	1551.37	REJECT	NS=2;DP=343;DPB=402.0;AC=2;AN=4;AF=0.5;RO=264;AO=75;PRO=27.5;PAO=29.5;QR=9925;QA=2773;PQR=856.0;PQA=931.0;SRF=84;SRR=180;SAF=21;SAR=54;SRP=78.8144;SAP=34.5401;AB=0.218659;ABP=238.827;RUN=1;RPP=3.73412;RPPR=30.6801;RPL=40.0;RPR=35.0;EPP=3.73412;EPPR=34.6283;DPRA=0.0;ODDS=94.5009;GTI=0;TYPE=ins;CIGAR=1M3I6M;NUMALT=1;MEANALT=3.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992424;technology.ILLUMINA=1.0;END=78537138;HOMLEN=5;HOMSEQ=GGTGG;SVLEN=3;SVTYPE=INS;BaseQRankSum=0.488;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-0.744;QD=16.2;ReadPosRankSum=-0.642;SOR=0.785;ClippingRankSum=-0.04	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:43,52:46:48:95:118.325:95:51:1877:44:1597:-120.891,0.0,-142.964:1771,0,2212:1:.:1:1:.:.:-0.00355946	0/1:144,42:36:18:215:137.65:248:213:8048:31:1176:-43.0182,0.0,-657.644:.:.:.:1:1:.:.:-0.0302105
chr12	78540174	.	TA	T	8109.255	REJECT	NS=2;DP=283;DPB=323.5;AC=4;AN=4;AF=1.0;RO=7;AO=279;PRO=37.5;PAO=55.5;QR=261;QA=10517;PQR=1344.0;PQA=2023.0;SRF=2;SRR=5;SAF=68;SAR=211;SRP=5.80219;SAP=162.166;AB=0.0;ABP=0.0;RUN=1;RPP=113.226;RPPR=3.32051;RPL=199.0;RPR=80.0;EPP=7.12754;EPPR=5.80219;DPRA=0.0;ODDS=35.367;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0717;MQMR=60.0;PAIRED=0.992832;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.406;FS=1.0745;MLEAC=2;MLEAF=1.0;MQ=60.31;MQRankSum=0.221;QD=23.5;RPA=10,9;RU=A;ReadPosRankSum=0.509;SOR=1.6605;STR;ClippingRankSum=0.212	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.0025:85:3:113:72:2628:-244.809,-11.7296,0.0:79:96:82:3,87:2331,182,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:243:4:148:207:7889:-738.981,-44.0357,0.0:217:98:221:5,227:6720,549,0:.:1:1:.:.:.:-0.0302105
chr12	78542594	.	T	G	967.098	REJECT	NS=2;DP=241;DPB=265.0;AC=2;AN=4;AF=0.5;RO=212;AO=53;PRO=0.0;PAO=0.0;QR=8044;QA=2003;PQR=0.0;PQA=0.0;SRF=143;SRR=69;SAF=40;SAR=13;SRP=59.0998;SAP=32.8783;AB=0.2;ABP=210.169;RUN=1;RPP=37.4671;RPPR=82.3305;RPL=12.0;RPR=41.0;EPP=3.37904;EPPR=14.851;DPRA=0.0;ODDS=61.1961;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1887;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4535;Dels=0.0;FS=2.6755;HaplotypeScore=34.7887;MLEAC=1;MLEAF=0.5;MQ=60.115;MQRankSum=-0.379;QD=11.675;ReadPosRankSum=0.058;SOR=1.194;ClippingRankSum=-1.024	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:48:22:814:26:996:-76.7431,0.0,-60.3405:26:54:48:22,26:1050,0,1357:1:.:1:.:.:.:-0.00355946	0/1:129.501:217:190:7230:27:1007:-31.8241,0.0,-591.653:27:12:217:190,27:475,0,7433:.:1:1:.:.:.:-0.0302105
chr12	78542602	.	A	AT	1165.57	REJECT	NS=2;DP=298;DPB=332.308;AC=2;AN=4;AF=0.5;RO=231;AO=61;PRO=32.5;PAO=29.5;QR=8850;QA=2250;PQR=1144.5;PQA=1025.5;SRF=147;SRR=84;SAF=43;SAR=18;SRP=40.3201;SAP=25.259;AB=0.204698;ABP=228.727;RUN=1;RPP=9.02635;RPPR=27.4605;RPL=24.0;RPR=37.0;EPP=11.0198;EPPR=37.9889;DPRA=0.0;ODDS=80.2302;GTI=0;TYPE=ins;CIGAR=1M1I12M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.129;FS=3.992;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.301;QD=19.28;ReadPosRankSum=-0.829;SOR=1.356;ClippingRankSum=0.434	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:58:25:961:30:1108:-88.0394,0.0,-71.3662:31:54:57:27,32:1175,0,1453:1:.:1:.:.:.:-0.00355946	0/1:160.002:241:206:7889:31:1142:-37.4401,0.0,-658.509:31:13:237:.:.:.:.:1:.:.:.:-0.0302105
chr12	78542699	.	T	C	1380.6599999999999	REJECT	NS=2;DP=321;DPB=365.0;AC=2;AN=4;AF=0.5;RO=293;AO=72;PRO=0.0;PAO=0.0;QR=11040;QA=2804;PQR=0.0;PQA=0.0;SRF=89;SRR=204;SAF=28;SAR=44;SRP=101.023;SAP=10.7311;AB=0.19726;ABP=293.577;RUN=1;RPP=20.3821;RPPR=54.0658;RPL=48.0;RPR=24.0;EPP=7.35324;EPPR=3.37345;DPRA=0.0;ODDS=86.041;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986111;PAIREDR=0.989761;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.664;Dels=0.0;FS=3.1895;HaplotypeScore=4.8881;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.076;QD=8.645;ReadPosRankSum=0.177;SOR=0.543;ClippingRankSum=0.483	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:49:1753:39:1532:-114.082,0.0,-133.978:38:44:87:48,38:1334,0,1583:1:.:1:.:.:.:-0.00355946	0/1:129.501:277:244:9287:33:1272:-39.8019,0.0,-760.33:33:12:277:244,33:614,0,9525:.:1:1:.:.:.:-0.0302105
chr12	78569059	.	G	A	1837.38	REJECT	NS=1;DP=56;DPB=56.0;AC=2;AN=4;AF=1.0;RO=0;AO=56;PRO=0.0;PAO=0.0;QR=0;QA=2172;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=42;SAR=14;SRP=0.0;SAP=33.4109;AB=0.0;ABP=0.0;RUN=1;RPP=53.2644;RPPR=0.0;RPL=10.0;RPR=46.0;EPP=8.59409;EPPR=0.0;DPRA=0.0;ODDS=39.5737;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.14;SOR=2.221	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.4265:56:0:0:56:2172:-195.665,-15.1867,0.0:56:100:56:0,56:2429,168,0:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	78570914	.	G	C	1575.52	REJECT	NS=2;DP=308;DPB=356.0;AC=2;AN=4;AF=0.5;RO=276;AO=80;PRO=0.0;PAO=0.0;QR=10509;QA=3073;PQR=0.0;PQA=0.0;SRF=199;SRR=77;SAF=53;SAR=27;SRP=120.112;SAP=21.3592;AB=0.224719;ABP=237.334;RUN=1;RPP=16.1477;RPPR=35.2362;RPL=29.0;RPR=51.0;EPP=6.91895;EPPR=3.04177;DPRA=0.0;ODDS=117.32;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9875;PAIREDR=0.996377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.219;Dels=0.0;FS=4.7895;HaplotypeScore=5.9209;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1145;QD=9.265;ReadPosRankSum=0.1425;SOR=0.3625;ClippingRankSum=1.103	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4325:93:51:1947:44:1693:-126.656,0.0,-149.513:43:46:93:49,42:1468,0,1692:1:.:1:.:.:.:-0.00355946	0/1:118.4325:261:225:8562:36:1380:-53.4707,0.0,-699.472:36:14:261:225,36:781,0,8763:.:1:1:.:.:.:-0.0302105
chr12	78582566	.	A	G	10478.085	REJECT	NS=2;DP=282;DPB=333.0;AC=4;AN=4;AF=1.0;RO=0;AO=333;PRO=0.0;PAO=0.0;QR=0;QA=12723;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=93;SAR=240;SRP=0.0;SAP=143.921;AB=0.0;ABP=0.0;RUN=1;RPP=140.113;RPPR=0.0;RPL=239.0;RPR=94.0;EPP=10.9984;EPPR=0.0;DPRA=0.0;ODDS=66.7319;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996997;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.035;SOR=2.0525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:100:3842:-345.831,-27.1062,0.0:100:100:100:0,100:4226,301,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:232:0:0:233:8881:-798.861,-63.0699,0.0:232:100:232:0,232:9873,683,0:.:1:1:.:.:.:-0.0302105
chr12	78592992	.	ATGGGAACATTATTAC	A	5155.41	REJECT	NS=2;DP=269;DPB=109.0;AC=2;AN=4;AF=0.5;RO=66;AO=203;PRO=55.5;PAO=38.5;QR=2476;QA=6671;PQR=2087.5;PQA=1453.5;SRF=25;SRR=41;SAF=92;SAR=111;SRP=11.433;SAP=6.87188;AB=0.751852;ABP=151.764;RUN=1;RPP=10.8083;RPPR=28.8048;RPL=115.0;RPR=88.0;EPP=3.87675;EPPR=6.30041;DPRA=0.0;ODDS=128.35;GTI=0;TYPE=del;CIGAR=1M15D1M;NUMALT=1;MEANALT=1.5;LEN=15;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=78593007;HOMLEN=1;HOMSEQ=T;SVLEN=-15;SVTYPE=DEL;BaseQRankSum=-0.2605;FS=2.3155;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.811;QD=19.39;ReadPosRankSum=-0.1275;SOR=0.4835;ClippingRankSum=-1.017	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.949:84:39:1447:34:1157:-81.4124,0.0,-144.453:43:47:88:42,49:1654,0,3852:1:.:1:1:.:.:-0.00355946	0/1:117.949:232:27:1029:169:5514:-441.436,0.0,-58.2944:172:86:205:26,223:30331,0,4923:.:1:1:1:.:.:-0.0302105
chr12	78594396	.	AT	A	2700.46	REJECT	NS=2;DP=118;DPB=141.105;AC=2;AN=2;AF=0.0;RO=33;AO=7;PRO=11.0;PAO=18.5;QR=1229;QA=202;PQR=385.5;PQA=645.5;SRF=8;SRR=25;SAF=3;SAR=4;SRP=22.0271;SAP=3.32051;AB=0.059322;ABP=202.05;RUN=1;RPP=18.2106;RPPR=17.8158;RPL=7.0;RPR=0.0;EPP=3.32051;EPPR=3.60252;DPRA=0.0;ODDS=67.2822;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:19:706:2:48:-34.5826,-30.7273,-94.2707:2:6:35:.:.:1:.:.:.:-0.00355946	./1:160.002:80:14:523:5:154:-247.553,-141.995,-186.778:5:7:75:.:.:1:.:.:.:-0.0302105
chr12	78594405	.	T	A	2700.46	REJECT	NS=2;DP=118;DPB=141.105;AC=2;AN=4;AF=0.5;RO=33;AO=64;PRO=11.0;PAO=18.5;QR=1229;QA=2292;PQR=385.5;PQA=645.5;SRF=8;SRR=25;SAF=18;SAR=46;SRP=22.0271;SAP=29.6108;AB=0.542373;ABP=4.85053;RUN=1;RPP=42.2325;RPPR=17.8158;RPL=49.0;RPR=15.0;EPP=3.14602;EPPR=3.60252;DPRA=0.0;ODDS=67.2822;GTI=0;TYPE=snp;CIGAR=9M1X9M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:38:19:706:11:416:-34.5826,0.0,-61.0841:11:31:35:.:.:1:.:.:.:-0.00355946	0/1:160.002:80:14:523:53:1876:-247.553,0.0,-31.81:53:71:75:.:.:1:.:.:.:-0.0302105
chr12	78594405	.	TA	T	2700.46	REJECT	NS=2;DP=118;DPB=141.105;AC=2;AN=2;AF=0.0;RO=33;AO=6;PRO=11.0;PAO=11.0;QR=1229;QA=214;PQR=385.5;PQA=385.5;SRF=8;SRR=25;SAF=1;SAR=5;SRP=22.0271;SAP=8.80089;AB=0.0508475;ABP=209.779;RUN=1;RPP=16.0391;RPPR=17.8158;RPL=6.0;RPR=0.0;EPP=8.80089;EPPR=3.60252;DPRA=0.0;ODDS=67.2822;GTI=0;TYPE=del;CIGAR=10M1D8M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=56.3333;MQMR=60.0;PAIRED=0.833333;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:19:706:3:105:-34.5826,-31.1181,-88.7892:3:9:35:.:.:1:.:.:.:-0.00355946	./1:160.002:80:14:523:3:109:-247.553,-242.349,-284.818:3:4:75:.:.:1:.:.:.:-0.0302105
chr12	78598891	.	G	A	8346.55	REJECT	NS=2;DP=333;DPB=380.0;AC=2;AN=4;AF=0.5;RO=107;AO=273;PRO=0.0;PAO=0.0;QR=3994;QA=10504;PQR=0.0;PQA=0.0;SRF=47;SRR=60;SAF=121;SAR=152;SRP=6.44001;SAP=10.6542;AB=0.718421;ABP=160.476;RUN=1;RPP=3.08189;RPPR=6.44001;RPL=135.0;RPR=138.0;EPP=6.51806;EPPR=3.51765;DPRA=0.0;ODDS=222.75;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2345;Dels=0.0;FS=1.3645;HaplotypeScore=10.7024;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4735;QD=23.045;ReadPosRankSum=0.1765;SOR=0.875;ClippingRankSum=0.517	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.674:91:55:2046:38:1454:-105.706,0.0,-158.982:37:41:91:53,37:1267,0,1805:1:.:1:.:.:.:-0.00355946	0/1:118.674:287:52:1948:235:9050:-736.32,0.0,-97.4714:235:82:287:52,235:9308,0,1282:.:1:1:.:.:.:-0.0302105
chr12	89743223	.	G	A	13402.25	REJECT	NS=2;DP=353;DPB=406.0;AC=4;AN=4;AF=1.0;RO=0;AO=406;PRO=0.0;PAO=0.0;QR=0;QA=15586;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=174;SAR=232;SRP=0.0;SAP=21.0025;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=203.0;RPR=203.0;EPP=8.48712;EPPR=0.0;DPRA=0.0;ODDS=70.4501;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992611;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.4;SOR=1.1265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:106:4037:-363.36,-28.721,0.0:104:100:104:0,103:4195,309,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:300:0:0:300:11549:-1038.76,-81.2383,0.0:300:100:300:0,300:12877,888,0:.:1:1:.:.:.:-0.0302105
chr12	89745477	.	C	A	2903.31	REJECT	NS=1;DP=86;DPB=86.0;AC=2;AN=4;AF=1.0;RO=0;AO=86;PRO=0.0;PAO=0.0;QR=0;QA=3269;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=49;SAR=37;SRP=0.0;SAP=6.64625;AB=0.0;ABP=0.0;RUN=1;RPP=4.62628;RPPR=0.0;RPL=47.0;RPR=39.0;EPP=5.53527;EPPR=0.0;DPRA=0.0;ODDS=58.2642;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=38.97;SOR=0.961	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.4955:84:0:0:86:3269:-294.301,-23.3038,0.0:84:100:84:0,82:3402,247,0:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0302105
chr12	105003006	.	T	G	10353.3	REJECT	NS=2;DP=385;DPB=436.0;AC=2;AN=4;AF=0.5;RO=100;AO=336;PRO=0.0;PAO=0.0;QR=3865;QA=12897;PQR=0.0;PQA=0.0;SRF=60;SRR=40;SAF=174;SAR=162;SRP=11.6962;SAP=3.94093;AB=0.770642;ABP=280.401;RUN=1;RPP=3.42391;RPPR=17.6895;RPL=164.0;RPR=172.0;EPP=4.66476;EPPR=3.09716;DPRA=0.0;ODDS=169.069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988095;PAIREDR=0.98;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.075;Dels=0.0;FS=5.9845;HaplotypeScore=4.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6235;QD=24.87;ReadPosRankSum=1.1825;SOR=0.437;ClippingRankSum=1.004	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8005:95:52:1996:45:1713:-127.915,0.0,-153.373:44:46:95:50,44:1544,0,1763:1:.:1:.:.:.:-0.00355946	0/1:117.8005:337:48:1869:291:11184:-914.099,0.0,-76.2898:289:86:337:47,288:11403,0,1054:.:1:1:.:.:.:-0.0302105
chr12	111884608	.	T	C	5037.245000000001	REJECT	NS=2;DP=337;DPB=385.0;AC=2;AN=4;AF=0.5;RO=201;AO=184;PRO=0.0;PAO=0.0;QR=7605;QA=6893;PQR=0.0;PQA=0.0;SRF=117;SRR=84;SAF=107;SAR=77;SRP=14.7751;SAP=13.6316;AB=0.477922;ABP=4.64031;RUN=1;RPP=4.19045;RPPR=3.53966;RPL=97.0;RPR=87.0;EPP=6.03148;EPPR=7.77458;DPRA=0.0;ODDS=274.318;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1915;Dels=0.0;FS=0.386;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.616;QD=16.125;ReadPosRankSum=0.595;SOR=0.66;ClippingRankSum=-0.205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:52:1972:44:1623:-120.09,0.0,-151.902:43:45:94:51,42:1421,0,1743:1:.:1:.:.:.:-0.00355946	0/1:129.501:289:149:5633:140:5270:-395.755,0.0,-428.857:140:48:289:149,140:5019,0,5469:.:1:1:.:.:.:-0.0323893
chr12	111885351	.	ATGGGG	A	753.16	REJECT	NS=2;DP=195;DPB=230.786;AC=2;AN=4;AF=0.5;RO=84;AO=45;PRO=53.5;PAO=42.5;QR=2999;QA=1302;PQR=1896.5;PQA=1471.5;SRF=58;SRR=26;SAF=27;SAR=18;SRP=29.4816;SAP=6.91895;AB=0.230769;ABP=125.782;RUN=1;RPP=16.956;RPPR=8.07707;RPL=31.0;RPR=14.0;EPP=4.21667;EPPR=5.59539;DPRA=0.0;ODDS=39.6723;GTI=0;TYPE=del;CIGAR=1M5D22M;NUMALT=2;MEANALT=19.0;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=111885356;HOMLEN=20;HOMSEQ=TGGGGTGGGGTGGGGTGGGG;SVLEN=-5;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21,61:44:69:62:160.002:54:11:390:28:815:-63.6691,0.0,-27.7407:.:.:1:1:.:.:-0.00355946	0/1:123,42:29:22:128:160.002:141:73:2609:17:487:-18.6291,0.0,-245.669:.:.:1:1:.:.:-0.0323893
chr12	111885352	.	TGGGGT	G	753.16	REJECT	NS=2;DP=195;DPB=230.786;AC=2;AN=2;AF=0.0;RO=84;AO=5;PRO=53.5;PAO=1.0;QR=2999;QA=70;PQR=1896.5;PQA=35.0;SRF=58;SRR=26;SAF=0;SAR=5;SRP=29.4816;SAP=13.8677;AB=0.025641;ABP=384.132;RUN=1;RPP=3.44459;RPPR=8.07707;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=5.59539;DPRA=0.0;ODDS=39.6723;GTI=0;TYPE=complex;CIGAR=1M5D1X21M;NUMALT=2;MEANALT=19.0;LEN=23;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988095;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:54:11:390:4:56:-63.6691,-71.6028,-198.303:4:9:43:.:.:1:.:.:.:-0.00355946	./1:160.002:141:73:2609:1:14:-18.6291,-74.8091,-691.084:1:1:91:.:.:1:.:.:.:-0.0323893
chr12	111984851	.	T	C	2020.285	REJECT	NS=2;DP=329;DPB=382.0;AC=2;AN=4;AF=0.5;RO=292;AO=90;PRO=0.0;PAO=0.0;QR=11298;QA=3551;PQR=0.0;PQA=0.0;SRF=116;SRR=176;SAF=35;SAR=55;SRP=29.7819;SAP=12.6613;AB=0.235602;ABP=234.96;RUN=1;RPP=7.73928;RPPR=17.4075;RPL=52.0;RPR=38.0;EPP=4.55446;EPPR=3.48624;DPRA=0.0;ODDS=121.761;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989726;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.2275;Dels=0.0;FS=2.998;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4595;QD=10.65;ReadPosRankSum=0.2985;SOR=0.773;ClippingRankSum=1.202	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:52:2024:54:2120:-162.068,0.0,-153.434:54:51:105:51,54:1980,0,1798:1:.:1:.:.:.:-0.00355946	0/1:129.501:276:240:9274:36:1431:-53.9267,0.0,-759.425:36:13:276:240,36:775,0,9570:.:1:1:.:.:.:-0.0323893
chr12	111989099	.	C	CA	97.6299	REJECT	NS=1;DP=69;DPB=90.5926;AC=1;AN=4;AF=0.5;RO=26;AO=8;PRO=16.8333;PAO=14.8333;QR=930;QA=286;PQR=544.833;PQA=479.833;SRF=16;SRR=10;SAF=6;SAR=2;SRP=6.01695;SAP=7.35324;AB=0.115942;ABP=91.4113;RUN=1;RPP=20.3821;RPPR=11.3621;RPL=0.0;RPR=8.0;EPP=7.35324;EPPR=3.34437;DPRA=0.0;ODDS=1.32047;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.76254:69:26:930:8:286:-15.9906,0.0,-79.8161:8:17:48:.:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0323893
chr12	111989099	.	CA	C	97.6299	REJECT	NS=1;DP=69;DPB=90.5926;AC=1;AN=3;AF=0.0;RO=26;AO=10;PRO=16.8333;PAO=13.8333;QR=930;QA=295;PQR=544.833;PQA=445.5;SRF=16;SRR=10;SAF=6;SAR=4;SRP=6.01695;SAP=3.87889;AB=0.144928;ABP=78.5712;RUN=1;RPP=3.87889;RPPR=11.3621;RPL=4.0;RPR=6.0;EPP=10.8276;EPPR=3.34437;DPRA=0.0;ODDS=1.32047;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=61.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.228;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.365;QD=0.56;ReadPosRankSum=0.593;SOR=0.33;ClippingRankSum=0.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:41.38127:58:26:930:10:295:-15.9906,-2.17063,-107.236:10:22:47:36,11:76,0,652:1:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0323893
chr12	111989117	.	G	A	97.6299	REJECT	NS=1;DP=69;DPB=90.5926;AC=1;AN=3;AF=0.0;RO=26;AO=4;PRO=16.8333;PAO=11.5;QR=930;QA=56;PQR=544.833;PQA=328.833;SRF=16;SRR=10;SAF=4;SAR=0;SRP=6.01695;SAP=11.6962;AB=0.057971;ABP=120.112;RUN=1;RPP=5.18177;RPPR=11.3621;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=3.34437;DPRA=0.0;ODDS=1.32047;GTI=0;TYPE=snp;CIGAR=18M1X8M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.76254:69:26:930:4:56:-15.9906,-28.9403,-257.608:4:8:48:.:.:1:.:.:.:-0.00355946	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0323893
chr12	115117337	.	G	A	1943.995	REJECT	NS=2;DP=356;DPB=409.0;AC=2;AN=4;AF=0.5;RO=309;AO=100;PRO=0.0;PAO=0.0;QR=11813;QA=3869;PQR=0.0;PQA=0.0;SRF=175;SRR=134;SAF=61;SAR=39;SRP=14.8234;SAP=13.5202;AB=0.244499;ABP=234.922;RUN=1;RPP=10.0459;RPPR=3.86062;RPL=41.0;RPR=59.0;EPP=6.13722;EPPR=4.59147;DPRA=0.0;ODDS=183.993;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.518;Dels=0.0;FS=1.8705;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2995;QD=9.575;ReadPosRankSum=0.898;SOR=0.8845;ClippingRankSum=-1.402	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:53:2030:53:2046:-155.429,0.0,-153.985:52:50:104:52,51:1619,0,1802:1:.:1:.:.:.:-0.00355946	0/1:129.501:303:256:9783:47:1823:-81.9513,0.0,-797.868:47:16:303:256,47:1153,0,9992:.:1:1:.:.:.:-0.0323893
chr12	121416622	.	C	G	4493.05	REJECT	NS=2;DP=321;DPB=364.0;AC=2;AN=4;AF=0.5;RO=203;AO=160;PRO=0.0;PAO=0.0;QR=7753;QA=6160;PQR=0.0;PQA=0.0;SRF=111;SRR=92;SAF=71;SAR=89;SRP=6.87188;SAP=7.40753;AB=0.43956;ABP=14.5597;RUN=1;RPP=3.87889;RPPR=3.27772;RPL=76.0;RPR=84.0;EPP=4.36747;EPPR=3.021;DPRA=0.0;ODDS=220.609;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99375;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5475;Dels=0.0;FS=6.7345;HaplotypeScore=7.9973;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.314;QD=15.44;ReadPosRankSum=0.6425;SOR=0.804;ClippingRankSum=-1.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:50:1910:34:1325:-96.5215,0.0,-149.185:34:40:83:49,34:1238,0,1788:1:.:1:.:.:.:-0.00355946	0/1:129.501:279:153:5843:126:4835:-359.346,0.0,-450.018:126:45:279:153,126:4575,0,5686:.:1:1:.:.:.:-0.0323893
chr12	121432117	.	G	C	5826.25	REJECT	NS=2;DP=379;DPB=433.0;AC=2;AN=4;AF=0.5;RO=215;AO=218;PRO=0.0;PAO=0.0;QR=7919;QA=8144;PQR=0.0;PQA=0.0;SRF=96;SRR=119;SAF=97;SAR=121;SRP=8.35313;SAP=8.74777;AB=0.503464;ABP=3.05543;RUN=1;RPP=6.23763;RPPR=6.65635;RPL=118.0;RPR=100.0;EPP=15.9196;EPPR=3.82839;DPRA=0.0;ODDS=294.038;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.147;Dels=0.0;FS=4.2065;HaplotypeScore=31.3447;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6045;QD=17.345;ReadPosRankSum=-0.4665;SOR=0.721;ClippingRankSum=-0.015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:48:1750:60:2259:-174.463,0.0,-128.268:60:56:108:48,60:1927,0,1555:1:.:1:.:.:.:-0.00355946	0/1:129.501:325:167:6169:158:5885:-441.399,0.0,-466.984:158:48:325:168,158:5605,0,5953:.:1:1:.:.:.:-0.0323893
chr12	121434630	.	C	CTCATTCAT	6631.81	REJECT	NS=2;DP=197;DPB=406.056;AC=4;AN=4;AF=1.0;RO=2;AO=186;PRO=87.5;PAO=108.5;QR=75;QA=6759;PQR=3049.0;PQA=3773.0;SRF=2;SRR=0;SAF=104;SAR=82;SRP=7.35324;SAP=8.6608;AB=0.0;ABP=0.0;RUN=1;RPP=3.43058;RPPR=3.0103;RPL=96.0;RPR=90.0;EPP=5.29852;EPPR=3.0103;DPRA=0.0;ODDS=33.251;GTI=0;TYPE=ins;CIGAR=1M8I17M;NUMALT=1;MEANALT=4.0;LEN=8;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=121434630;HOMLEN=16;HOMSEQ=TCATTCATTCATTCAT;SVLEN=8;SVTYPE=INS;BaseQRankSum=1.325;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.48;MQRankSum=-0.265;QD=28.165;RPA=4,6;RU=TCAT;ReadPosRankSum=1.488;SOR=0.693;STR;ClippingRankSum=0.428	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:115.9995:71:2:75:55:1968:-201.611,-11.3615,0.0:84:96:85:9,105:4062,235,0:1:.:1:1:.:.:-0.00355946	1/1:129.501:179:0:0:131:4791:-464.899,-38.3969,0.0:142:100:142:23,246:14100,429,0:.:1:1:1:.:.:-0.0323893
chr12	121435475	.	G	A	6168.845	REJECT	NS=2;DP=402;DPB=468.0;AC=2;AN=4;AF=0.5;RO=246;AO=222;PRO=0.0;PAO=0.0;QR=9286;QA=8472;PQR=0.0;PQA=0.0;SRF=144;SRR=102;SAF=137;SAR=85;SRP=18.5813;SAP=29.4592;AB=0.474359;ABP=5.68288;RUN=1;RPP=33.6848;RPPR=6.54115;RPL=83.0;RPR=139.0;EPP=4.92746;EPPR=8.09472;DPRA=0.0;ODDS=344.701;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995495;PAIREDR=0.995935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3545;Dels=0.0;FS=3.667;HaplotypeScore=6.8702;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.212;QD=16.285;ReadPosRankSum=0.2075;SOR=0.747;ClippingRankSum=-0.32	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:130:75:2818:55:2069:-151.003,0.0,-218.379:55:42:130:75,55:1911,0,2660:1:.:1:.:.:.:-0.00355946	0/1:129.501:337:171:6468:167:6403:-485.14,0.0,-490.237:166:49:337:171,166:6125,0,6238:.:1:1:.:.:.:-0.0323893
chr12	121435536	.	A	G	8198.880000000001	REJECT	NS=2;DP=490;DPB=573.0;AC=2;AN=4;AF=0.5;RO=279;AO=294;PRO=0.0;PAO=0.0;QR=10502;QA=11046;PQR=0.0;PQA=0.0;SRF=151;SRR=128;SAF=148;SAR=146;SRP=7.12754;SAP=3.03984;AB=0.513089;ABP=3.86297;RUN=1;RPP=3.03984;RPPR=3.64073;RPL=146.0;RPR=148.0;EPP=11.5485;EPPR=3.08035;DPRA=0.0;ODDS=452.287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993197;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7325;Dels=0.0;FS=2.254;HaplotypeScore=3.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2125;QD=17.225;ReadPosRankSum=0.2835;SOR=0.5755;ClippingRankSum=-1.11	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:163:91:3456:73:2685:-197.172,0.0,-266.574:73:45:163:90,73:2413,0,3188:1:.:1:.:.:.:-0.00355946	0/1:129.501:408:188:7046:221:8361:-641.285,0.0,-523.018:220:54:408:188,220:8113,0,6624:.:1:1:.:.:.:-0.0323893
chr12	121435587	.	G	T	7495.505	REJECT	NS=2;DP=487;DPB=567.0;AC=2;AN=4;AF=0.5;RO=296;AO=271;PRO=0.0;PAO=0.0;QR=11347;QA=10254;PQR=0.0;PQA=0.0;SRF=140;SRR=156;SAF=114;SAR=157;SRP=4.88833;SAP=17.826;AB=0.477954;ABP=5.4039;RUN=1;RPP=8.85164;RPPR=3.74391;RPL=149.0;RPR=122.0;EPP=5.326;EPPR=15.9511;DPRA=0.0;ODDS=418.74;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9932;PAIRED=0.99631;PAIREDR=0.989865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3375;Dels=0.0;FS=2.669;HaplotypeScore=11.6559;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.011;QD=15.795;ReadPosRankSum=-0.8045;SOR=0.9085;ClippingRankSum=0.152	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.07:160:94:3611:67:2518:-182.951,0.0,-281.293:67:42:160:92,67:2165,0,3304:1:.:1:.:.:.:-0.00355946	0/1:118.07:406:202:7736:204:7736:-585.815,0.0,-585.848:204:50:406:202,204:7417,0,7457:.:1:1:.:.:.:-0.0323893
chr12	121437114	.	G	A	2875.92	PASS	SOMATIC;NS=2;DP=393;DPB=393.0;AC=1;AN=3;AF=0.25;RO=282;AO=111;PRO=0.0;PAO=0.0;QR=10680;QA=4218;PQR=0.0;PQA=0.0;SRF=176;SRR=106;SAF=72;SAR=39;SRP=40.7416;SAP=24.3142;AB=0.356913;ABP=58.3165;RUN=1;RPP=4.59489;RPPR=32.6101;RPL=51.0;RPR=60.0;EPP=3.49937;EPPR=14.1295;DPRA=3.79268;ODDS=51.2652;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.882;Dels=0.0;FS=5.588;HaplotypeScore=5.7845;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.288;QD=12.02;ReadPosRankSum=0.672;SOR=1.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:81:82:3098:0:0:0.0,-21.8382,-278.544:0:0:81:80,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:129.501:311:200:7582:111:4218:-295.181,0.0,-597.786:111:36:311:195,108:37.0:0.358:2:3768,0,7561:.:1:1:.:.:1:-0.0323893
chr12	121437221	.	T	C	14211.15	REJECT	NS=2;DP=377;DPB=435.0;AC=4;AN=4;AF=1.0;RO=0;AO=435;PRO=0.0;PAO=0.0;QR=0;QA=16594;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=249;SRP=0.0;SAP=22.8231;AB=0.0;ABP=0.0;RUN=1;RPP=4.13348;RPPR=0.0;RPL=225.0;RPR=210.0;EPP=17.0325;EPPR=0.0;DPRA=0.0;ODDS=75.4646;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993103;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.7279;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.02;SOR=1.0105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.395:113:0:0:114:4407:-396.631,-30.8988,0.0:113:100:113:0,113:4698,340,0:1:.:1:.:.:.:-0.00355946	1/1:124.395:320:0:0:321:12187:-1095.67,-86.4619,0.0:320:100:320:0,320:13605,942,0:.:1:1:.:.:.:-0.0323893
chr12	121437382	.	A	G	8887.494999999999	REJECT	NS=2;DP=243;DPB=281.0;AC=4;AN=4;AF=1.0;RO=1;AO=280;PRO=0.0;PAO=0.0;QR=16;QA=10510;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=73;SAR=207;SRP=5.18177;SAP=142.264;AB=0.0;ABP=0.0;RUN=1;RPP=5.523;RPPR=5.18177;RPL=149.0;RPR=131.0;EPP=43.2136;EPPR=5.18177;DPRA=0.0;ODDS=51.0429;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.648;Dels=0.0;FS=0.0;HaplotypeScore=8.8598;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.673;QD=32.67;ReadPosRankSum=-1.631;SOR=1.524	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:74:0:0:75:2797:-251.831,-20.2926,0.0:74:100:74:0,74:3013,222,0:1:.:1:.:.:.:-0.00355946	1/1:129.501:206:1:16:205:7713:-692.412,-54.3093,0.0:205:100:206:1,205:8579,599,0:.:1:1:.:.:.:-0.0323893
chr12	121438844	.	T	C	2787.81	REJECT	NS=2;DP=191;DPB=224.0;AC=2;AN=4;AF=0.5;RO=119;AO=105;PRO=0.0;PAO=0.0;QR=4569;QA=3937;PQR=0.0;PQA=0.0;SRF=86;SRR=33;SAF=83;SAR=22;SRP=54.268;SAP=79.9631;AB=0.46875;ABP=4.91034;RUN=1;RPP=13.9504;RPPR=39.9618;RPL=41.0;RPR=64.0;EPP=3.03098;EPPR=5.21827;DPRA=0.0;ODDS=149.56;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.54;Dels=0.0;FS=2.942;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.496;QD=15.49;ReadPosRankSum=0.9795;SOR=1.1475;ClippingRankSum=0.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.927:64:39:1503:26:956:-68.4752,0.0,-117.758:26:40:64:38,26:863,0,1375:1:.:1:.:.:.:-0.00355946	0/1:119.927:159:80:3066:79:2981:-225.141,0.0,-232.809:79:50:159:80,79:2881,0,2972:.:1:1:.:.:.:-0.0323893
chr12	121506154	.	G	A	2640.2	PASS	SOMATIC;NS=2;DP=404;DPB=404.0;AC=1;AN=3;AF=0.25;RO=302;AO=102;PRO=0.0;PAO=0.0;QR=11688;QA=3941;PQR=0.0;PQA=0.0;SRF=162;SRR=140;SAF=61;SAR=41;SRP=6.49041;SAP=11.5259;AB=0.329032;ABP=81.7157;RUN=1;RPP=3.35092;RPPR=8.6475;RPL=53.0;RPR=49.0;EPP=7.18293;EPPR=7.15192;DPRA=3.29787;ODDS=59.6778;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990066;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.535;Dels=0.0;FS=4.799;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.859;QD=11.29;ReadPosRankSum=-0.059;SOR=0.969	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.428:91:94:3673:0:0:0.0,-25.4918,-330.638:0:0:91:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.00355946	0/1:119.714:309:208:8015:102:3941:-270.502,0.0,-636.938:102:33:309:198,98:38.0:0.331:2:3517,0,7997:.:1:1:.:.:1:-0.0323893
chr12	133202215	.	G	A	1114.99	REJECT	NS=2;DP=260;DPB=297.0;AC=2;AN=4;AF=0.5;RO=240;AO=57;PRO=0.0;PAO=0.0;QR=9233;QA=2233;PQR=0.0;PQA=0.0;SRF=144;SRR=96;SAF=32;SAR=25;SRP=23.8564;SAP=4.877;AB=0.191919;ABP=247.86;RUN=1;RPP=39.6206;RPPR=63.8477;RPL=13.0;RPR=44.0;EPP=4.877;EPPR=52.5561;DPRA=0.0;ODDS=41.0786;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982456;PAIREDR=0.995833;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.585;Dels=0.0;FS=1.482;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6295;QD=8.825;ReadPosRankSum=-0.205;SOR=0.5115;ClippingRankSum=0.029	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8195:71:38:1386:34:1334:-100.997,0.0,-105.295:34:48:71:36,34:1168,0,1258:1:.:1:.:.:.:-0.00355946	0/1:119.8195:224:202:7847:23:899:-19.897,0.0,-644.925:23:10:224:201,23:334,0,8092:.:1:1:.:.:.:-0.0323893
chr12	133208886	.	C	T	4803.845	REJECT	NS=2;DP=202;DPB=232.0;AC=3;AN=4;AF=0.75;RO=58;AO=174;PRO=0.0;PAO=0.0;QR=2229;QA=6617;PQR=0.0;PQA=0.0;SRF=44;SRR=14;SAF=137;SAR=37;SRP=36.7056;SAP=127.808;AB=0.666667;ABP=44.9921;RUN=1;RPP=75.0932;RPPR=12.5947;RPL=49.0;RPR=125.0;EPP=9.05049;EPPR=3.60933;DPRA=0.0;ODDS=37.1639;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994253;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.121;Dels=0.0;FS=0.0;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.002;QD=26.535;ReadPosRankSum=-0.741;SOR=1.9665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.3115:57:0:0:58:2170:-195.477,-15.7141,0.0:57:100:57:0,56:2337,168,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:173:58:2229:116:4447:-352.952,0.0,-153.401:115:66:173:58,115:4419,0,1988:.:1:1:.:.:.:-0.0323893
chr12	133208979	.	T	C	9163.685000000001	REJECT	NS=2;DP=373;DPB=447.0;AC=3;AN=4;AF=0.75;RO=105;AO=342;PRO=0.0;PAO=0.0;QR=4045;QA=13136;PQR=0.0;PQA=0.0;SRF=52;SRR=53;SAF=167;SAR=175;SRP=3.03098;SAP=3.41666;AB=0.651163;ABP=62.751;RUN=1;RPP=9.51202;RPPR=3.03098;RPL=155.0;RPR=187.0;EPP=7.30245;EPPR=8.98702;DPRA=0.0;ODDS=92.0208;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=0.990476;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.29;Dels=0.0;FS=1.651;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.822;QD=27.655;ReadPosRankSum=-0.044;SOR=0.9165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:145:0:0:146:5601:-503.952,-39.5382,0.0:145:100:145:0,144:5724,432,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:300:105:4045:196:7535:-596.193,0.0,-282.33:195:65:300:105,194:7425,0,3640:.:1:1:.:.:.:-0.0323893
chr12	133210985	.	C	T	5078.31	REJECT	NS=2;DP=211;DPB=237.0;AC=3;AN=4;AF=0.75;RO=59;AO=178;PRO=0.0;PAO=0.0;QR=2237;QA=6797;PQR=0.0;PQA=0.0;SRF=13;SRR=46;SAF=35;SAR=143;SRP=43.0905;SAP=145.303;AB=0.682796;ABP=56.9936;RUN=1;RPP=89.0884;RPPR=13.6468;RPL=131.0;RPR=47.0;EPP=17.1127;EPPR=3.93042;DPRA=0.0;ODDS=32.826;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.168;Dels=0.0;FS=0.0;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.362;QD=30.06;ReadPosRankSum=-1.466;SOR=2.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.879:50:0:0:51:1932:-174.085,-13.8302,0.0:50:100:50:0,49:2049,147,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:186:59:2237:127:4865:-387.327,0.0,-150.87:127:68:186:59,127:4881,0,1933:.:1:1:.:.:.:-0.0323893
chr12	133219831	.	T	C	7002.725	REJECT	NS=2;DP=306;DPB=348.0;AC=3;AN=4;AF=0.75;RO=93;AO=255;PRO=0.0;PAO=0.0;QR=3508;QA=9545;PQR=0.0;PQA=0.0;SRF=67;SRR=26;SAF=154;SAR=101;SRP=42.2602;SAP=26.9306;AB=0.647727;ABP=53.0529;RUN=1;RPP=18.7556;RPPR=20.0318;RPL=106.0;RPR=149.0;EPP=9.21816;EPPR=3.22044;DPRA=0.0;ODDS=53.3398;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996078;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.636;Dels=0.0;FS=6.114;HaplotypeScore=4.7847;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.521;QD=29.73;ReadPosRankSum=-0.884;SOR=0.807	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:84:3205:-288.512,-22.7392,0.0:83:100:83:0,83:3271,248,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:264:93:3508:171:6340:-498.832,0.0,-244.141:171:65:264:93,171:6264,0,3126:.:1:1:.:.:.:-0.0323893
chr12	133220526	.	T	C	6641.59	REJECT	NS=2;DP=409;DPB=466.0;AC=2;AN=4;AF=0.5;RO=231;AO=235;PRO=0.0;PAO=0.0;QR=8729;QA=8956;PQR=0.0;PQA=0.0;SRF=119;SRR=112;SAF=122;SAR=113;SRP=3.47092;SAP=3.75876;AB=0.504292;ABP=3.08486;RUN=1;RPP=3.01954;RPPR=6.40381;RPL=118.0;RPR=117.0;EPP=9.74648;EPPR=12.044;DPRA=0.0;ODDS=358.286;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991489;PAIREDR=0.974026;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.798;Dels=0.0;FS=0.771;HaplotypeScore=10.7829;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2665;QD=17.725;ReadPosRankSum=0.6655;SOR=0.7205;ClippingRankSum=0.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:56:2101:54:2073:-156.769,0.0,-159.301:53:49:107:53,52:1794,0,1774:1:.:1:.:.:.:-0.00355946	0/1:129.501:354:175:6628:181:6883:-522.673,0.0,-499.775:180:51:354:172,180:6586,0,6217:.:1:1:.:.:.:-0.0323893
chr12	133233705	.	T	C	8500.99	REJECT	NS=2;DP=228;DPB=259.0;AC=4;AN=4;AF=1.0;RO=1;AO=258;PRO=0.0;PAO=0.0;QR=27;QA=9945;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=202;SAR=56;SRP=5.18177;SAP=182.418;AB=0.0;ABP=0.0;RUN=1;RPP=112.392;RPPR=5.18177;RPL=72.0;RPR=186.0;EPP=24.0517;EPPR=5.18177;DPRA=0.0;ODDS=41.7574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992248;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.662;Dels=0.0;FS=3.44;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.927;QD=27.46;ReadPosRankSum=1.05;SOR=2.4085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.335:59:0:0:60:2292:-206.444,-16.26,0.0:59:100:59:0,59:2505,177,0:1:.:1:.:.:.:-0.00355946	1/1:120.335:198:1:27:198:7653:-686.039,-51.4728,0.0:197:99:198:1,197:8459,555,0:.:1:1:.:.:.:-0.0323893
chr12	133236000	.	C	T	9603.635	REJECT	NS=2;DP=405;DPB=462.0;AC=3;AN=4;AF=0.75;RO=122;AO=340;PRO=0.0;PAO=0.0;QR=4721;QA=12963;PQR=0.0;PQA=0.0;SRF=59;SRR=63;SAF=154;SAR=186;SRP=3.29508;SAP=9.55026;AB=0.651429;ABP=72.7208;RUN=1;RPP=3.11249;RPPR=4.14943;RPL=172.0;RPR=168.0;EPP=3.41905;EPPR=4.7902;DPRA=0.0;ODDS=70.9008;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997059;PAIREDR=0.991803;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.014;Dels=0.0;FS=0.9245;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.143;QD=27.475;ReadPosRankSum=0.04;SOR=0.8915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:112:4295:-386.591,-30.3658,0.0:111:100:111:0,110:4434,331,0:1:.:1:.:.:.:-0.00355946	0/1:129.501:349:122:4721:228:8668:-684.833,0.0,-329.851:228:65:349:121,228:8588,0,4194:.:1:1:.:.:.:-0.0323893
chr12	133252796	.	C	G	6364.5	REJECT	NS=2;DP=259;DPB=294.0;AC=2;AN=4;AF=0.5;RO=80;AO=214;PRO=0.0;PAO=0.0;QR=2983;QA=8072;PQR=0.0;PQA=0.0;SRF=26;SRR=54;SAF=90;SAR=124;SRP=24.2907;SAP=14.7403;AB=0.727891;ABP=135.633;RUN=1;RPP=17.6627;RPPR=8.33041;RPL=126.0;RPR=88.0;EPP=17.6627;EPPR=8.33041;DPRA=0.0;ODDS=169.522;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6365;Dels=0.0;FS=3.827;HaplotypeScore=5.8462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2905;QD=23.09;ReadPosRankSum=-0.7105;SOR=0.392;ClippingRankSum=3.264	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.5815:69:40:1463:29:1107:-81.0136,0.0,-113.049:29:42:69:40,29:1039,0,1299:1:.:1:.:.:.:-0.00355946	0/1:128.5815:224:40:1520:185:6965:-565.634,0.0,-75.8436:184:82:224:40,184:7092,0,1049:.:1:1:.:.:.:-0.0323893
chr12	133257837	.	C	A	1345.5349999999999	REJECT	NS=2;DP=305;DPB=351.0;AC=2;AN=4;AF=0.5;RO=279;AO=71;PRO=0.0;PAO=0.0;QR=10441;QA=2677;PQR=0.0;PQA=0.0;SRF=75;SRR=204;SAF=21;SAR=50;SRP=132.528;SAP=28.7315;AB=0.202279;ABP=273.244;RUN=1;RPP=6.71098;RPPR=3.20488;RPL=41.0;RPR=30.0;EPP=19.1893;EPPR=61.9202;DPRA=0.0;ODDS=67.5366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8255;Dels=0.0;FS=0.864;HaplotypeScore=4.9205;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.007;QD=8.475;ReadPosRankSum=0.9395;SOR=0.5185;ClippingRankSum=-0.285	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:50:1818:41:1556:-115.465,0.0,-139.007:40:45:89:47,40:1357,0,1681:1:.:1:.:.:.:-0.00355946	0/1:129.501:260:229:8623:30:1121:-30.7411,0.0,-705.552:30:12:259:229,30:464,0,8863:.:1:1:.:.:.:-0.0323893
chr13	19526947	.	T	C	8997.17	REJECT	NS=2;DP=340;DPB=389.0;AC=2;AN=4;AF=0.5;RO=93;AO=295;PRO=0.0;PAO=0.0;QR=3514;QA=11315;PQR=0.0;PQA=0.0;SRF=47;SRR=46;SAF=127;SAR=168;SRP=3.03365;SAP=15.384;AB=0.758355;ABP=228.536;RUN=1;RPP=12.0274;RPPR=9.75821;RPL=165.0;RPR=130.0;EPP=48.9498;EPPR=4.90158;DPRA=0.0;ODDS=158.729;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99322;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0675;Dels=0.0;FS=4.9435;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.3665;QD=25.35;ReadPosRankSum=0.4125;SOR=1.0055;ClippingRankSum=0.689	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.4175:96:50:1862:47:1809:-136.579,0.0,-141.314:47:48:96:48,47:1665,0,1575:1:.:1:.:.:.:-0.0017966	0/1:122.4175:291:43:1652:248:9506:-776.212,0.0,-70.1608:247:85:290:43,247:9769,0,990:.:1:1:.:.:.:-0.0152891
chr13	19675226	.	T	A	2711.86	PASS	SOMATIC;NS=2;DP=418;DPB=418.0;AC=1;AN=3;AF=0.25;RO=312;AO=106;PRO=0.0;PAO=0.0;QR=11914;QA=4047;PQR=0.0;PQA=0.0;SRF=145;SRR=167;SAF=39;SAR=67;SRP=6.37887;SAP=19.071;AB=0.336508;ABP=76.1441;RUN=1;RPP=5.96022;RPPR=3.26085;RPL=59.0;RPR=47.0;EPP=7.02548;EPPR=19.0458;DPRA=3.05825;ODDS=65.1787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990566;PAIREDR=0.996795;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.094;Dels=0.0;FS=6.441;HaplotypeScore=5.9225;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.177;QD=11.38;ReadPosRankSum=1.949;SOR=1.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:99:103:3899:0:0:0.0,-27.8808,-350.909:0:0:99:95,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:129.501:315:209:8015:106:4047:-278.698,0.0,-635.613:106:34:315:201,101:38.0:0.333:2:3614,0,8033:.:1:1:.:.:1:-0.0152891
chr13	19812530	.	T	G	13212.5	REJECT	NS=2;DP=358;DPB=407.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=0.0;PAO=0.0;QR=0;QA=15177;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=185;SAR=222;SRP=0.0;SAP=10.3143;AB=0.0;ABP=0.0;RUN=1;RPP=26.9605;RPPR=0.0;RPL=237.0;RPR=170.0;EPP=24.1862;EPPR=0.0;DPRA=0.0;ODDS=64.1075;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990172;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7533;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.055;SOR=0.967	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.328:94:0:0:96:3533:-318.0,-25.9665,0.0:94:100:94:0,93:3775,278,0:1:.:1:.:.:.:-0.0017966	1/1:123.328:310:0:0:311:11644:-1047.28,-84.1341,0.0:310:100:310:0,310:12895,903,0:.:1:1:.:.:.:-0.0152891
chr13	19831333	.	A	G	7732.11	REJECT	NS=2;DP=288;DPB=330.0;AC=2;AN=4;AF=0.5;RO=75;AO=255;PRO=0.0;PAO=0.0;QR=2920;QA=9776;PQR=0.0;PQA=0.0;SRF=53;SRR=22;SAF=160;SAR=95;SRP=30.8341;SAP=38.9886;AB=0.772727;ABP=216.209;RUN=1;RPP=25.1593;RPPR=13.4623;RPL=102.0;RPR=153.0;EPP=50.9104;EPPR=15.7786;DPRA=0.0;ODDS=143.598;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.723;Dels=0.0;FS=2.8815;HaplotypeScore=5.7868;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1365;QD=25.57;ReadPosRankSum=0.7145;SOR=0.4815;ClippingRankSum=1.173	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.356:83:37:1443:47:1782:-137.66,0.0,-107.147:46:56:83:36,46:1504,0,1254:1:.:1:.:.:.:-0.0017966	0/1:117.356:246:38:1477:208:7994:-652.444,0.0,-66.2381:208:85:246:38,208:8180,0,912:.:1:1:.:.:.:-0.0152891
chr13	19843834	.	A	G	10376.75	REJECT	NS=2;DP=277;DPB=316.0;AC=4;AN=4;AF=1.0;RO=0;AO=316;PRO=0.0;PAO=0.0;QR=0;QA=12121;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=71;SAR=245;SRP=0.0;SAP=211.059;AB=0.0;ABP=0.0;RUN=1;RPP=10.047;RPPR=0.0;RPL=174.0;RPR=142.0;EPP=49.2159;EPPR=0.0;DPRA=0.0;ODDS=52.1372;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993671;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9662;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.57;SOR=2.405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0375:76:0:0:78:3000:-269.737,-20.7678,0.0:76:100:76:0,75:3119,226,0:1:.:1:.:.:.:-0.0017966	1/1:126.0375:238:0:0:238:9121:-820.466,-64.4554,0.0:238:100:238:0,238:10193,704,0:.:1:1:.:.:.:-0.0152891
chr13	19869324	.	A	G	2572.25	PASS	SOMATIC;NS=2;DP=385;DPB=385.0;AC=1;AN=3;AF=0.25;RO=285;AO=100;PRO=0.0;PAO=0.0;QR=11154;QA=3811;PQR=0.0;PQA=0.0;SRF=183;SRR=102;SAF=60;SAR=40;SRP=52.9999;SAP=11.6962;AB=0.34965;ABP=59.1649;RUN=1;RPP=22.5536;RPPR=33.2509;RPL=35.0;RPR=65.0;EPP=3.79203;EPPR=15.8182;DPRA=2.88889;ODDS=62.7959;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992982;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.583;Dels=0.0;FS=2.863;HaplotypeScore=6.8955;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.081;QD=11.94;ReadPosRankSum=2.616;SOR=0.513	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.215:95:99:3869:0:0:0.0,-26.846,-348.257:0:0:95:92,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:121.6075:284:186:7285:100:3811:-265.305,0.0,-577.79:100:35:284:178,97:38.0:0.356:2:3418,0,7235:.:1:1:.:.:1:-0.0152891
chr13	19873459	.	T	C	9180.59	REJECT	NS=2;DP=340;DPB=398.0;AC=2;AN=4;AF=0.5;RO=99;AO=298;PRO=0.0;PAO=0.0;QR=3774;QA=11541;PQR=0.0;PQA=0.0;SRF=61;SRR=38;SAF=168;SAR=130;SRP=14.6134;SAP=13.5325;AB=0.748744;ABP=216.906;RUN=1;RPP=11.4339;RPPR=3.20771;RPL=132.0;RPR=166.0;EPP=11.4339;EPPR=16.7191;DPRA=0.0;ODDS=84.1198;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=58.0067;MQMR=58.2727;PAIRED=0.996644;PAIREDR=0.979798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.188;Dels=0.0;FS=3.0535;HaplotypeScore=7.9316;MLEAC=1;MLEAF=0.5;MQ=58.295;MQRankSum=0.8605;QD=20.975;ReadPosRankSum=0.552;SOR=0.527;ClippingRankSum=1.361	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.056:113:66:2495:48:1862:-136.397,0.0,-193.338:48:42:113:64,48:1585,0,2229:1:.:1:.:.:.:-0.0017966	0/1:119.056:283:33:1279:250:9679:-790.704,0.0,-38.2343:249:88:282:32,249:9956,0,549:.:1:1:.:.:.:-0.0152891
chr13	19873542	.	T	C	8031.92	REJECT	NS=2;DP=319;DPB=364.0;AC=2;AN=4;AF=0.5;RO=97;AO=267;PRO=0.0;PAO=0.0;QR=3712;QA=10283;PQR=0.0;PQA=0.0;SRF=22;SRR=75;SAF=80;SAR=187;SRP=65.8935;SAP=96.1234;AB=0.733516;ABP=175.416;RUN=1;RPP=76.4093;RPPR=3.56996;RPL=181.0;RPR=86.0;EPP=3.01843;EPPR=5.71904;DPRA=0.0;ODDS=157.991;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8557;PAIRED=0.996255;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8335;Dels=0.0;FS=4.0515;HaplotypeScore=5.8867;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=0.0995;QD=22.97;ReadPosRankSum=0.592;SOR=0.384;ClippingRankSum=-1.567	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6535:89:54:2078:35:1335:-96.0513,0.0,-162.957:35:39:89:53,36:1145,0,1953:1:.:1:.:.:.:-0.0017966	0/1:118.6535:274:43:1634:232:8948:-730.392,0.0,-72.4958:231:84:274:43,231:9178,0,985:.:1:1:.:.:.:-0.0152891
chr13	19877501	.	T	TA	4960.754999999999	REJECT	NS=2;DP=231;DPB=308.0;AC=2;AN=4;AF=0.5;RO=66;AO=191;PRO=26.0;PAO=28.0;QR=2517;QA=7036;PQR=876.5;PQA=942.5;SRF=50;SRR=16;SAF=141;SAR=50;SRP=41.044;SAP=97.1567;AB=0.723485;ABP=117.539;RUN=1;RPP=39.9481;RPPR=28.8048;RPL=67.0;RPR=124.0;EPP=5.56832;EPPR=11.433;DPRA=0.0;ODDS=113.465;GTI=0;TYPE=ins;CIGAR=1M1I11M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.2304;MQMR=60.0;PAIRED=0.979058;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6565;FS=5.2725;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-0.65;QD=15.345;RPA=8,9;RU=A;ReadPosRankSum=-0.1175;SOR=0.7675;STR;ClippingRankSum=1.605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0075:63:36:1383:29:1058:-77.6448,0.0,-106.931:27:43:63:36,26:569,0,895:1:.:1:.:.:.:-0.0017966	0/1:119.0075:198:30:1134:162:5978:-491.189,0.0,-49.5601:165:84:195:30,168:4468,0,372:.:1:1:.:.:.:-0.0152891
chr13	19877547	.	G	A	9774.09	REJECT	NS=2;DP=362;DPB=416.0;AC=2;AN=4;AF=0.5;RO=102;AO=314;PRO=0.0;PAO=0.0;QR=3784;QA=12235;PQR=0.0;PQA=0.0;SRF=62;SRR=40;SAF=189;SAR=125;SRP=13.3141;SAP=31.3363;AB=0.754808;ABP=237.613;RUN=1;RPP=9.23427;RPPR=6.07591;RPL=142.0;RPR=172.0;EPP=10.0918;EPPR=24.8102;DPRA=0.0;ODDS=176.731;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2229;MQMR=60.0;PAIRED=0.990446;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6595;Dels=0.0;FS=0.0;HaplotypeScore=4.9129;MLEAC=1;MLEAF=0.5;MQ=60.125;MQRankSum=0.5515;QD=25.115;ReadPosRankSum=0.654;SOR=0.678;ClippingRankSum=0.856	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:54:1994:53:2065:-156.875,0.0,-150.49:52:49:106:54,52:1782,0,1835:1:.:1:.:.:.:-0.0017966	0/1:129.501:308:48:1790:261:10170:-831.048,0.0,-77.2847:260:84:308:48,260:10451,0,1056:.:1:1:.:.:.:-0.0152891
chr13	19960133	.	T	C	12807.7	REJECT	NS=2;DP=357;DPB=407.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=0.0;PAO=0.0;QR=0;QA=14920;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=229;SAR=178;SRP=0.0;SAP=16.8874;AB=0.0;ABP=0.0;RUN=1;RPP=29.9056;RPPR=0.0;RPL=168.0;RPR=239.0;EPP=61.8321;EPPR=0.0;DPRA=0.0;ODDS=66.7188;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8526;MQMR=0.0;PAIRED=0.995086;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7677;MLEAC=2;MLEAF=1.0;MQ=59.745;QD=29.48;SOR=0.8745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:100:3731:-335.1,-27.1005,0.0:97:100:97:0,94:3529,282,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:307:0:0:307:11189:-1005.89,-82.5597,0.0:307:100:307:0,307:12376,873,0:.:1:1:.:.:.:-0.0152891
chr13	19960226	.	T	C	8971.33	REJECT	NS=2;DP=244;DPB=271.0;AC=4;AN=4;AF=1.0;RO=0;AO=271;PRO=0.0;PAO=0.0;QR=0;QA=10368;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=95;SAR=176;SRP=0.0;SAP=55.5824;AB=0.0;ABP=0.0;RUN=1;RPP=226.48;RPPR=0.0;RPL=219.0;RPR=52.0;EPP=3.08242;EPPR=0.0;DPRA=0.0;ODDS=37.4401;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.5867;MQMR=0.0;PAIRED=0.99262;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=58.61;QD=28.615;SOR=1.544	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.2905:51:0:0:53:2037:-182.761,-14.385,0.0:51:100:51:0,50:2125,150,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:218:0:0:218:8331:-747.572,-59.0371,0.0:218:100:218:0,218:9274,644,0:.:1:1:.:.:.:-0.0152891
chr13	28531385	.	C	T	14118.65	REJECT	NS=2;DP=371;DPB=429.0;AC=4;AN=4;AF=1.0;RO=0;AO=429;PRO=0.0;PAO=0.0;QR=0;QA=16495;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=198;SAR=231;SRP=0.0;SAP=8.5225;AB=0.0;ABP=0.0;RUN=1;RPP=6.70028;RPPR=0.0;RPL=228.0;RPR=201.0;EPP=50.6359;EPPR=0.0;DPRA=0.0;ODDS=75.418;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993007;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=12.6092;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.24;SOR=0.88	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:114:4375:-393.721,-30.8785,0.0:113:100:113:0,113:4522,339,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:314:0:0:315:12120:-1090.09,-85.297,0.0:314:100:314:0,314:13527,933,0:.:1:1:.:.:.:-0.0152891
chr13	28589267	.	C	T	1069.1599999999999	REJECT	NS=2;DP=188;DPB=217.0;AC=2;AN=4;AF=0.5;RO=163;AO=54;PRO=0.0;PAO=0.0;QR=6244;QA=2050;PQR=0.0;PQA=0.0;SRF=121;SRR=42;SAF=42;SAR=12;SRP=86.1524;SAP=39.2015;AB=0.248848;ABP=121.901;RUN=1;RPP=67.3502;RPPR=118.232;RPL=7.0;RPR=47.0;EPP=13.3047;EPPR=17.5179;DPRA=0.0;ODDS=88.016;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.038;Dels=0.0;FS=0.0;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.17;QD=11.155;ReadPosRankSum=0.8715;SOR=0.6925;ClippingRankSum=0.246	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:27:1058:29:1109:-84.7182,0.0,-80.117:29:52:56:27,29:1079,0,1018:1:.:1:.:.:.:-0.0017966	0/1:129.501:160:136:5186:25:941:-41.0571,0.0,-423.008:25:16:160:135,25:596,0,5280:.:1:1:.:.:.:-0.0152891
chr13	28609825	.	A	G	5647.45	REJECT	NS=2;DP=229;DPB=280.067;AC=2;AN=4;AF=0.5;RO=46;AO=178;PRO=23.5;PAO=30.5;QR=1737;QA=6798;PQR=841.0;PQA=1044.0;SRF=19;SRR=27;SAF=71;SAR=107;SRP=6.03148;SAP=18.8206;AB=0.712;ABP=100.605;RUN=1;RPP=7.89001;RPPR=3.0103;RPL=99.0;RPR=79.0;EPP=3.44947;EPPR=3.19912;DPRA=0.0;ODDS=88.042;GTI=0;TYPE=snp;CIGAR=12M1X2M;NUMALT=1;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994382;PAIREDR=0.956522;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.48;Dels=0.0;FS=1.3795;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4635;QD=25.155;ReadPosRankSum=-0.445;SOR=0.484;ClippingRankSum=-1.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:19:721:22:825:-62.6772,0.0,-59.8877:24:52:47:26,27:951,0,955:1:.:1:.:.:.:-0.0017966	0/1:129.501:203:27:1016:156:5973:-510.153,0.0,-39.4239:167:85:195:28,179:6939,0,605:.:1:1:.:.:.:-0.0152891
chr13	28609846	.	A	T	4185.2	REJECT	NS=2;DP=166;DPB=184.0;AC=2;AN=4;AF=0.5;RO=40;AO=144;PRO=0.0;PAO=0.0;QR=1452;QA=5479;PQR=0.0;PQA=0.0;SRF=14;SRR=26;SAF=57;SAR=87;SRP=10.8276;SAP=16.582;AB=0.782609;ABP=130.655;RUN=1;RPP=159.899;RPPR=45.5712;RPL=123.0;RPR=21.0;EPP=6.8707;EPPR=6.48466;DPRA=0.0;ODDS=68.2601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.95;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.742;Dels=0.0;FS=2.2005;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0295;QD=25.13;ReadPosRankSum=-0.3605;SOR=0.452;ClippingRankSum=-0.086	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:34:17:605:18:673:-51.2213,0.0,-45.0686:18:52:34:16,18:619,0,550:1:.:1:.:.:.:-0.0017966	0/1:129.501:149:23:847:126:4806:-392.094,0.0,-35.8612:126:85:149:23,126:4927,0,496:.:1:1:.:.:.:-0.0152891
chr13	28610183	.	A	G	7323.17	REJECT	NS=2;DP=273;DPB=305.0;AC=2;AN=4;AF=0.5;RO=64;AO=240;PRO=0.0;PAO=0.0;QR=2497;QA=9215;PQR=0.0;PQA=0.0;SRF=14;SRR=50;SAF=85;SAR=155;SRP=46.9826;SAP=47.3445;AB=0.786885;ABP=221.047;RUN=1;RPP=40.0701;RPPR=5.18177;RPL=152.0;RPR=88.0;EPP=3.04649;EPPR=7.89611;DPRA=0.0;ODDS=155.847;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995833;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5015;Dels=0.0;FS=6.6185;HaplotypeScore=5.8546;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4715;QD=27.07;ReadPosRankSum=-0.243;SOR=0.2685;ClippingRankSum=1.08	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:61:25:976:37:1438:-112.697,0.0,-71.0979:36:59:61:25,35:1328,0,915:1:.:1:.:.:.:-0.0017966	0/1:129.501:242:39:1521:203:7777:-634.005,0.0,-71.2892:202:84:241:39,202:7888,0,997:.:1:1:.:.:.:-0.0152891
chr13	28611382	.	T	G	1956.16	REJECT	NS=2;DP=355;DPB=411.0;AC=2;AN=4;AF=0.5;RO=314;AO=97;PRO=0.0;PAO=0.0;QR=12183;QA=3691;PQR=0.0;PQA=0.0;SRF=140;SRR=174;SAF=40;SAR=57;SRP=11.0046;SAP=9.47994;AB=0.23601;ABP=251.8;RUN=1;RPP=3.21178;RPPR=20.2991;RPL=50.0;RPR=47.0;EPP=12.8827;EPPR=20.2991;DPRA=0.0;ODDS=155.11;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996815;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.416;Dels=0.0;FS=2.73;HaplotypeScore=10.7142;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8525;QD=9.705;ReadPosRankSum=0.039;SOR=0.808;ClippingRankSum=-0.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:57:2217:54:2033:-152.904,0.0,-169.447:53:49:110:56,53:1805,0,1980:1:.:1:.:.:.:-0.0017966	0/1:129.501:299:257:9966:43:1658:-67.8772,0.0,-815.106:43:14:299:256,43:957,0,10179:.:1:1:.:.:.:-0.0152891
chr13	28623699	.	G	T	6207.41	REJECT	NS=2;DP=375;DPB=426.0;AC=2;AN=4;AF=0.5;RO=207;AO=219;PRO=0.0;PAO=0.0;QR=7920;QA=8331;PQR=0.0;PQA=0.0;SRF=95;SRR=112;SAF=102;SAR=117;SRP=6.04197;SAP=5.24126;AB=0.514085;ABP=3.74432;RUN=1;RPP=5.87585;RPPR=4.27961;RPL=118.0;RPR=101.0;EPP=4.686;EPPR=10.6577;DPRA=0.0;ODDS=331.27;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980676;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.873;Dels=0.0;FS=3.428;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0615;QD=18.55;ReadPosRankSum=0.908;SOR=0.862;ClippingRankSum=0.577	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:50:1913:50:1912:-145.009,0.0,-145.089:49:49:99:50,49:1824,0,1788:1:.:1:.:.:.:-0.0017966	0/1:129.501:325:157:6007:169:6419:-489.078,0.0,-452.041:169:52:325:155,169:6170,0,5654:.:1:1:.:.:.:-0.0152891
chr13	28623759	.	C	T	6037.620000000001	REJECT	NS=2;DP=378;DPB=432.0;AC=2;AN=4;AF=0.5;RO=210;AO=222;PRO=0.0;PAO=0.0;QR=8063;QA=8267;PQR=0.0;PQA=0.0;SRF=116;SRR=94;SAF=120;SAR=102;SRP=8.01503;SAP=6.17948;AB=0.513889;ABP=3.73412;RUN=1;RPP=3.04943;RPPR=4.49931;RPL=110.0;RPR=112.0;EPP=3.36243;EPPR=3.17575;DPRA=0.0;ODDS=338.764;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990991;PAIREDR=0.980952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.2885;Dels=0.0;FS=2.5155;HaplotypeScore=5.8312;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2315;QD=17.545;ReadPosRankSum=-0.507;SOR=0.9565;ClippingRankSum=-0.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.273:103:51:1956:54:2017:-153.094,0.0,-147.617:53:51:103:50,52:1764,0,1799:1:.:1:.:.:.:-0.0017966	0/1:124.273:325:159:6107:168:6250:-473.624,0.0,-460.784:167:51:325:157,167:5901,0,5775:.:1:1:.:.:.:-0.0152891
chr13	28624294	.	G	A	3103.89	PASS	SOMATIC;NS=2;DP=427;DPB=427.0;AC=1;AN=3;AF=0.25;RO=309;AO=117;PRO=0.0;PAO=0.0;QR=11946;QA=4534;PQR=0.0;PQA=0.0;SRF=164;SRR=145;SAF=57;SAR=60;SRP=5.5472;SAP=3.17734;AB=0.35474;ABP=62.9416;RUN=1;RPP=5.25601;RPPR=9.76365;RPL=64.0;RPR=53.0;EPP=3.47429;EPPR=10.6632;DPRA=0.0;ODDS=55.2068;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.411;Dels=0.0;FS=3.143;HaplotypeScore=2.9564;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.33;QD=12.3;ReadPosRankSum=-0.129;SOR=0.585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.169:97:99:3778:1:40:0.0,-23.4818,-336.447:1:1:97:93,1:.:0.011:0:.:.:.:0:.:.:0:-0.0017966	0/1:119.5845:326:210:8168:116:4494:-315.881,0.0,-646.348:116:36:325:204,109:38.0:0.34:2:4039,0,8135:.:1:1:.:.:1:-0.0152891
chr13	28636084	.	G	A	13909.65	REJECT	NS=2;DP=363;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15779;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=213;SRP=0.0;SAP=4.36615;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=205.0;RPR=205.0;EPP=18.4542;EPPR=0.0;DPRA=0.0;ODDS=61.765;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995122;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8906;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.875;SOR=0.8725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:92:3560:-320.484,-24.9491,0.0:91:100:91:0,90:3758,271,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:317:0:0:318:12219:-1099.06,-86.1474,0.0:317:100:317:0,317:13711,954,0:.:1:1:.:.:.:-0.0152891
chr13	28882948	.	G	A	3262.83	REJECT	NS=2;DP=220;DPB=253.0;AC=2;AN=4;AF=0.5;RO=130;AO=123;PRO=0.0;PAO=0.0;QR=4905;QA=4610;PQR=0.0;PQA=0.0;SRF=80;SRR=50;SAF=69;SAR=54;SRP=18.0436;SAP=6.98251;AB=0.486166;ABP=3.43086;RUN=1;RPP=45.3981;RPPR=41.4955;RPL=37.0;RPR=86.0;EPP=6.98251;EPPR=7.28643;DPRA=0.0;ODDS=201.681;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4705;Dels=0.0;FS=1.7665;HaplotypeScore=4.7738;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6985;QD=16.83;ReadPosRankSum=0.0785;SOR=0.5275;ClippingRankSum=0.72	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.927:64:31:1191:34:1249:-94.8801,0.0,-89.6545:34:52:64:30,34:1099,0,1087:1:.:1:.:.:.:-0.0017966	0/1:119.927:187:99:3714:89:3361:-251.853,0.0,-283.243:89:47:187:98,89:3195,0,3571:.:1:1:.:.:.:-0.0152891
chr13	28883061	.	G	A	4984.040000000001	REJECT	NS=2;DP=286;DPB=333.0;AC=2;AN=4;AF=0.5;RO=157;AO=176;PRO=0.0;PAO=0.0;QR=6058;QA=6788;PQR=0.0;PQA=0.0;SRF=52;SRR=105;SAF=54;SAR=122;SRP=41.8617;SAP=60.0608;AB=0.528529;ABP=5.36436;RUN=1;RPP=47.4268;RPPR=31.0181;RPL=118.0;RPR=58.0;EPP=3.79993;EPPR=3.68802;DPRA=0.0;ODDS=294.525;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993631;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3285;Dels=0.0;FS=0.5435;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7265;QD=18.585;ReadPosRankSum=-0.3505;SOR=0.7575;ClippingRankSum=0.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:49:1866:45:1732:-130.45,0.0,-142.486:45:48:93:48,45:1585,0,1632:1:.:1:.:.:.:-0.0017966	0/1:129.501:239:108:4192:131:5056:-390.052,0.0,-312.344:131:55:239:108,131:4955,0,3991:.:1:1:.:.:.:-0.0152891
chr13	28886113	.	A	G	9455.44	REJECT	NS=2;DP=264;DPB=310.0;AC=4;AN=4;AF=1.0;RO=0;AO=310;PRO=0.0;PAO=0.0;QR=0;QA=11321;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=211;SAR=99;SRP=0.0;SAP=90.8779;AB=0.0;ABP=0.0;RUN=1;RPP=64.9043;RPPR=0.0;RPL=108.0;RPR=202.0;EPP=3.12238;EPPR=0.0;DPRA=0.0;ODDS=60.8772;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0516;MQMR=0.0;PAIRED=0.996774;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.799;MLEAC=2;MLEAF=1.0;MQ=60.025;QD=29.545;SOR=1.7545	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:91:3180:-286.206,-24.5636,0.0:87:100:87:0,84:3363,250,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:219:0:0:219:8141:-732.274,-59.2181,0.0:219:100:219:0,219:8947,623,0:.:1:1:.:.:.:-0.0152891
chr13	28893642	.	A	G	9062.31	REJECT	NS=2;DP=356;DPB=404.0;AC=2;AN=4;AF=0.5;RO=108;AO=296;PRO=0.0;PAO=0.0;QR=4183;QA=11402;PQR=0.0;PQA=0.0;SRF=52;SRR=56;SAF=132;SAR=164;SRP=3.332;SAP=10.5224;AB=0.732673;ABP=192.982;RUN=1;RPP=10.5224;RPPR=3.09072;RPL=164.0;RPR=132.0;EPP=22.847;EPPR=12.7417;DPRA=0.0;ODDS=239.373;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8581;MQMR=60.0;PAIRED=0.993243;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.418;Dels=0.0;FS=0.5855;HaplotypeScore=7.7691;MLEAC=1;MLEAF=0.5;MQ=59.955;MQRankSum=0.5015;QD=23.585;ReadPosRankSum=0.3125;SOR=0.759;ClippingRankSum=-1.967	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:54:2076:41:1565:-115.136,0.0,-161.127:41:43:94:53,41:1422,0,1880:1:.:1:.:.:.:-0.0017966	0/1:129.501:309:54:2107:255:9837:-800.886,0.0,-105.828:255:83:309:54,255:10071,0,1444:.:1:1:.:.:.:-0.0152891
chr13	28942840	.	C	CT	167.226	REJECT	NS=2;DP=110;DPB=176.542;AC=2;AN=2;AF=0.0;RO=42;AO=11;PRO=48.6667;PAO=33.6667;QR=1506;QA=348;PQR=1758.5;PQA=1172.5;SRF=19;SRR=23;SAF=7;SAR=4;SRP=3.83753;SAP=4.78696;AB=0.1;ABP=155.882;RUN=1;RPP=19.0002;RPPR=94.2121;RPL=10.0;RPR=1.0;EPP=3.20771;EPPR=3.83753;DPRA=0.0;ODDS=0.247534;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=59.4545;MQMR=59.7619;PAIRED=1.0;PAIREDR=0.952381;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.58082:23:6:210:3:95:-6.63631,-1.06174,-23.3286:3:21:14:.:.:1:.:.:.:-0.0017966	./1:100.688:87:36:1296:8:253:-19.0877,-12.1299,-159.824:8:13:62:.:.:1:.:.:.:-0.0152891
chr13	28942840	.	CT	C	167.226	REJECT	NS=2;DP=110;DPB=176.542;AC=2;AN=3;AF=0.25;RO=42;AO=14;PRO=48.6667;PAO=30.1667;QR=1506;QA=382;PQR=1758.5;PQA=1053.5;SRF=19;SRR=23;SAF=5;SAR=9;SRP=3.83753;SAP=5.49198;AB=0.127273;ABP=135.746;RUN=1;RPP=33.4109;RPPR=94.2121;RPL=14.0;RPR=0.0;EPP=5.49198;EPPR=3.83753;DPRA=0.0;ODDS=0.247534;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=59.7619;PAIRED=1.0;PAIREDR=0.952381;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:3.58082:23:6:210:2:29:-6.63631,-6.20375,-57.9621:2:14:14:.:.:1:.:.:.:-0.0017966	0/1:100.688:87:36:1296:12:353:-19.0877,0.0,-206.52:12:19:62:.:.:1:.:.:.:-0.0152891
chr13	28942840	.	CTT	C	167.226	REJECT	NS=2;DP=110;DPB=176.542;AC=2;AN=3;AF=0.25;RO=42;AO=9;PRO=48.6667;PAO=24.5;QR=1506;QA=290;PQR=1758.5;PQA=876.5;SRF=19;SRR=23;SAF=5;SAR=4;SRP=3.83753;SAP=3.25157;AB=0.0818182;ABP=170.095;RUN=1;RPP=22.5536;RPPR=94.2121;RPL=9.0;RPR=0.0;EPP=3.25157;EPPR=3.83753;DPRA=0.0;ODDS=0.247534;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=3;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=59.7619;PAIRED=1.0;PAIREDR=0.952381;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3.58082:23:6:210:3:118:-6.63631,0.0,-70.3651:3:21:14:.:.:1:.:.:.:-0.0017966	./1:100.688:87:36:1296:6:172:-19.0877,-26.6396,-261.485:6:10:62:.:.:1:.:.:.:-0.0152891
chr13	28980036	.	T	TA	855.919	PASS	SOMATIC;NS=2;DP=202;DPB=226.067;AC=2;AN=3;AF=0.25;RO=139;AO=43;PRO=22.1667;PAO=17.1667;QR=5281;QA=1491;PQR=803.0;PQA=624.0;SRF=19;SRR=120;SAF=7;SAR=36;SRP=162.371;SAP=45.4803;AB=0.212871;ABP=147.66;RUN=1;RPP=14.3727;RPPR=12.7741;RPL=29.0;RPR=14.0;EPP=4.27278;EPPR=5.65044;DPRA=0.0;ODDS=7.36968;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.849;FS=2.27;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.728;QD=3.93;RPA=10,11;RU=A;ReadPosRankSum=-0.868;SOR=0.388;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.0088:57:48:1802:2:76:-4.99198,-11.98,-163.81:2:4:56:.:.:.:.:1:.:.:.:-0.0017966	0/1:121.7135:168:91:3479:41:1415:-93.4367,0.0,-292.008:44:30:145:103,48:787,0,2438:.:1:1:.:.:.:-0.0152891
chr13	28980036	.	TA	T	855.919	REJECT	NS=2;DP=202;DPB=226.067;AC=2;AN=3;AF=0.25;RO=139;AO=13;PRO=22.1667;PAO=15.6667;QR=5281;QA=477;PQR=803.0;PQA=568.0;SRF=19;SRR=120;SAF=2;SAR=11;SRP=162.371;SAP=16.5402;AB=0.0643564;ABP=335.998;RUN=1;RPP=3.17734;RPPR=12.7741;RPL=6.0;RPR=7.0;EPP=7.18621;EPPR=5.65044;DPRA=0.0;ODDS=7.36968;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:32.0088:57:48:1802:6:221:-4.99198,0.0,-150.745:6:11:56:.:.:1:.:.:.:-0.0017966	./1:144.427:145:91:3479:7:256:-93.4367,-98.857,-405.853:7:5:139:.:.:1:.:.:.:-0.0152891
chr13	29041007	.	A	T	2745.82	PASS	SOMATIC;NS=2;DP=405;DPB=405.0;AC=1;AN=3;AF=0.25;RO=299;AO=105;PRO=0.0;PAO=0.0;QR=11535;QA=4016;PQR=0.0;PQA=0.0;SRF=151;SRR=148;SAF=53;SAR=52;SRP=3.07566;SAP=3.03098;AB=0.351171;ABP=60.5362;RUN=1;RPP=4.02365;RPPR=5.63204;RPL=56.0;RPR=49.0;EPP=6.50534;EPPR=7.54933;DPRA=2.82075;ODDS=66.5129;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9833;PAIRED=0.990476;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.221;Dels=0.0;FS=0.0;HaplotypeScore=3.8989;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.514;QD=11.85;ReadPosRankSum=-0.437;SOR=0.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:102:105:4057:0:0:0.0,-28.4602,-365.153:0:0:101:97,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:129.501:299:194:7478:105:4016:-280.236,0.0,-591.644:105:35:299:186,100:38.0:0.347:2:3570,0,7477:.:1:1:.:.:1:-0.0152891
chr13	32790641	.	A	G	7792.610000000001	REJECT	NS=2;DP=328;DPB=379.0;AC=3;AN=4;AF=0.75;RO=94;AO=284;PRO=0.0;PAO=0.0;QR=3655;QA=10691;PQR=0.0;PQA=0.0;SRF=59;SRR=35;SAF=173;SAR=111;SRP=16.3163;SAP=32.4016;AB=0.658273;ABP=63.4991;RUN=1;RPP=11.8491;RPPR=3.37991;RPL=125.0;RPR=159.0;EPP=4.96768;EPPR=7.53805;DPRA=0.0;ODDS=63.0092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9366;MQMR=60.0;PAIRED=0.989437;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.41;Dels=0.0;FS=0.0;HaplotypeScore=3.9129;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.671;QD=28.09;ReadPosRankSum=-1.092;SOR=0.842	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.771:99:0:0:101:3763:-338.284,-26.9386,0.0:99:100:99:0,98:4006,294,0:1:.:1:.:.:.:-0.0017966	0/1:118.771:277:94:3655:183:6928:-548.142,0.0,-253.781:182:66:276:94,182:6848,0,3288:.:1:1:.:.:.:-0.0152891
chr13	32790998	.	G	A	2237.7650000000003	REJECT	NS=2;DP=389;DPB=444.0;AC=2;AN=4;AF=0.5;RO=334;AO=110;PRO=0.0;PAO=0.0;QR=12786;QA=4075;PQR=0.0;PQA=0.0;SRF=161;SRR=173;SAF=52;SAR=58;SRP=3.9465;SAP=3.72096;AB=0.247748;ABP=248.406;RUN=1;RPP=9.40627;RPPR=6.15698;RPL=46.0;RPR=64.0;EPP=20.7769;EPPR=8.10741;DPRA=0.0;ODDS=164.363;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=0.997006;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.721;Dels=0.0;FS=1.524;HaplotypeScore=6.8311;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2405;QD=11.095;ReadPosRankSum=0.2755;SOR=0.643;ClippingRankSum=-0.662	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7815:109:48:1859:61:2256:-173.525,0.0,-137.795:61:56:109:48,61:2121,0,1548:1:.:1:.:.:.:-0.0017966	0/1:121.7815:334:286:10927:49:1819:-72.9006,0.0,-892.115:49:15:334:285,49:1028,0,11159:.:1:1:.:.:.:-0.0152891
chr13	32791053	.	G	T	6081.085	REJECT	NS=2;DP=387;DPB=443.0;AC=2;AN=4;AF=0.5;RO=224;AO=218;PRO=0.0;PAO=0.0;QR=8646;QA=8268;PQR=0.0;PQA=0.0;SRF=101;SRR=123;SAF=102;SAR=116;SRP=7.70223;SAP=4.96263;AB=0.492099;ABP=3.25049;RUN=1;RPP=3.05014;RPPR=3.35929;RPL=110.0;RPR=108.0;EPP=4.96263;EPPR=3.16541;DPRA=0.0;ODDS=330.896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.995536;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0285;Dels=0.0;FS=1.788;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.134;QD=16.49;ReadPosRankSum=0.1185;SOR=0.5695;ClippingRankSum=2.061	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.1625:109:59:2303:51:1936:-144.425,0.0,-177.472:50:45:109:59,49:1651,0,2138:1:.:1:.:.:.:-0.0017966	0/1:118.1625:331:165:6343:167:6332:-479.612,0.0,-480.629:166:50:331:165,166:6015,0,6113:.:1:1:.:.:.:-0.0152891
chr13	32890572	.	G	A	1485.98	REJECT	NS=2;DP=285;DPB=327.0;AC=2;AN=4;AF=0.5;RO=253;AO=74;PRO=0.0;PAO=0.0;QR=9655;QA=2813;PQR=0.0;PQA=0.0;SRF=147;SRR=106;SAF=44;SAR=30;SRP=17.4381;SAP=8.76177;AB=0.2263;ABP=215.781;RUN=1;RPP=19.9126;RPPR=67.9742;RPL=25.0;RPR=49.0;EPP=7.23587;EPPR=4.46081;DPRA=0.0;ODDS=102.9;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986486;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.683;Dels=0.0;FS=3.8365;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1185;QD=9.885;ReadPosRankSum=1.4505;SOR=0.8065;ClippingRankSum=0.821	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:42:1609:41:1560:-117.952,0.0,-122.369:40:49:82:42,40:1435,0,1470:1:.:1:.:.:.:-0.0017966	0/1:129.501:243:211:8046:33:1253:-46.6566,0.0,-657.68:33:14:243:210,33:713,0,8212:.:1:1:.:.:.:-0.0152891
chr13	32911888	.	A	G	2295.15	REJECT	NS=2;DP=326;DPB=383.0;AC=2;AN=4;AF=0.5;RO=276;AO=107;PRO=0.0;PAO=0.0;QR=10538;QA=4083;PQR=0.0;PQA=0.0;SRF=141;SRR=135;SAF=53;SAR=54;SRP=3.29354;SAP=3.03059;AB=0.279373;ABP=164.941;RUN=1;RPP=4.65412;RPPR=3.51383;RPL=58.0;RPR=49.0;EPP=4.65412;EPPR=3.04177;DPRA=0.0;ODDS=181.078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.124;Dels=0.0;FS=2.395;HaplotypeScore=6.8986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.806;QD=11.015;ReadPosRankSum=0.4485;SOR=0.5075;ClippingRankSum=-0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.188:112:51:1942:63:2396:-184.742,0.0,-143.911:61:55:112:50,60:2042,0,1727:1:.:1:.:.:.:-0.0017966	0/1:119.188:269:225:8596:44:1687:-78.8817,0.0,-700.379:44:16:269:225,44:1075,0,8827:.:1:1:.:.:.:-0.0152891
chr13	32912299	.	T	C	3070.45	PASS	SOMATIC;NS=2;DP=397;DPB=397.0;AC=1;AN=3;AF=0.25;RO=280;AO=117;PRO=0.0;PAO=0.0;QR=10776;QA=4392;PQR=0.0;PQA=0.0;SRF=130;SRR=150;SAF=53;SAR=64;SRP=6.1124;SAP=5.25601;AB=0.384868;ABP=38.011;RUN=1;RPP=3.91972;RPPR=4.12706;RPL=55.0;RPR=62.0;EPP=3.91972;EPPR=6.1124;DPRA=3.26882;ODDS=58.9508;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.996429;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.542;Dels=0.0;FS=0.909;HaplotypeScore=10.6624;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.589;QD=13.07;ReadPosRankSum=-0.138;SOR=0.834	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:91:93:3541:0:0:0.0,-25.176,-318.718:0:0:91:89,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:129.501:304:187:7235:117:4392:-312.722,0.0,-568.448:117:38:304:181,112:37.0:0.379:2:4003,0,7172:.:1:1:.:.:1:-0.0152891
chr13	32913055	.	A	G	14207.65	REJECT	NS=2;DP=374;DPB=426.0;AC=4;AN=4;AF=1.0;RO=0;AO=426;PRO=0.0;PAO=0.0;QR=0;QA=16304;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=187;SAR=239;SRP=0.0;SAP=16.7935;AB=0.0;ABP=0.0;RUN=1;RPP=5.47742;RPPR=0.0;RPL=224.0;RPR=202.0;EPP=5.04924;EPPR=0.0;DPRA=0.0;ODDS=68.5465;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99061;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7983;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.18;SOR=0.914	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:103:3943:-354.877,-27.8943,0.0:101:100:101:0,100:4111,300,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:323:0:0:323:12361:-1111.74,-87.443,0.0:323:100:323:0,323:13838,957,0:.:1:1:.:.:.:-0.0152891
chr13	32915005	.	G	C	13525.15	REJECT	NS=2;DP=360;DPB=417.0;AC=4;AN=4;AF=1.0;RO=0;AO=417;PRO=0.0;PAO=0.0;QR=0;QA=15864;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=201;SAR=216;SRP=0.0;SAP=4.18196;AB=0.0;ABP=0.0;RUN=1;RPP=5.30675;RPPR=0.0;RPL=198.0;RPR=219.0;EPP=8.01458;EPPR=0.0;DPRA=0.0;ODDS=74.1913;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992806;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8905;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.755;SOR=0.779	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:112:4272:-384.488,-30.3458,0.0:111:100:111:0,111:4551,333,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:304:0:0:305:11592:-1042.64,-82.5715,0.0:304:100:304:0,304:12858,894,0:.:1:1:.:.:.:-0.0152891
chr13	32929232	.	A	G	1826.71	REJECT	NS=2;DP=393;DPB=448.0;AC=2;AN=4;AF=0.5;RO=352;AO=96;PRO=0.0;PAO=0.0;QR=13430;QA=3632;PQR=0.0;PQA=0.0;SRF=160;SRR=192;SAF=47;SAR=49;SRP=9.32731;SAP=3.10078;AB=0.214286;ABP=320.666;RUN=1;RPP=3.8246;RPPR=7.84676;RPL=45.0;RPR=51.0;EPP=4.45795;EPPR=7.84676;DPRA=0.0;ODDS=149.591;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997159;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4685;Dels=0.0;FS=0.987;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.624;QD=9.025;ReadPosRankSum=-0.5535;SOR=0.576;ClippingRankSum=-0.247	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:59:2230:50:1878:-139.508,0.0,-171.178:49:46:108:58,49:1685,0,1949:1:.:1:.:.:.:-0.0017966	0/1:129.501:339:293:11200:46:1754:-65.962,0.0,-915.55:46:14:339:293,46:948,0,11510:.:1:1:.:.:.:-0.0152891
chr13	32929387	.	T	C	11824.3	REJECT	NS=2;DP=312;DPB=362.0;AC=4;AN=4;AF=1.0;RO=0;AO=362;PRO=0.0;PAO=0.0;QR=0;QA=13921;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=167;SAR=195;SRP=0.0;SAP=7.71316;AB=0.0;ABP=0.0;RUN=1;RPP=4.95383;RPPR=0.0;RPL=190.0;RPR=172.0;EPP=12.608;EPPR=0.0;DPRA=0.0;ODDS=66.754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.805;SOR=0.858	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.652:99:0:0:100:3859:-347.374,-27.1158,0.0:99:100:99:0,99:4061,298,0:1:.:1:.:.:.:-0.0017966	1/1:127.652:262:0:0:262:10062:-905.065,-70.9476,0.0:262:100:262:0,262:11210,774,0:.:1:1:.:.:.:-0.0152891
chr13	32936646	.	T	C	5376.295	REJECT	NS=2;DP=257;DPB=292.0;AC=3;AN=4;AF=0.75;RO=95;AO=197;PRO=0.0;PAO=0.0;QR=3693;QA=7462;PQR=0.0;PQA=0.0;SRF=58;SRR=37;SAF=135;SAR=62;SRP=13.0905;SAP=61.7503;AB=0.575893;ABP=14.2166;RUN=1;RPP=61.7503;RPPR=27.9022;RPL=62.0;RPR=135.0;EPP=3.90314;EPPR=4.86177;DPRA=0.0;ODDS=43.4103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979695;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.686;Dels=0.0;FS=0.537;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.945;QD=24.95;ReadPosRankSum=0.537;SOR=1.6955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.508:67:0:0:68:2539:-228.661,-18.4269,0.0:67:100:67:0,66:2780,198,0:1:.:1:.:.:.:-0.0017966	0/1:119.508:223:95:3693:129:4923:-382.191,0.0,-271.522:129:58:223:94,129:4849,0,3433:.:1:1:.:.:.:-0.0152891
chr13	32970031	.	T	C	3544.4	REJECT	NS=1;DP=265;DPB=265.0;AC=1;AN=4;AF=0.5;RO=136;AO=129;PRO=0.0;PAO=0.0;QR=5153;QA=4839;PQR=0.0;PQA=0.0;SRF=46;SRR=90;SAF=44;SAR=85;SRP=33.9218;SAP=31.3068;AB=0.486792;ABP=3.41182;RUN=1;RPP=6.79775;RPPR=3.5851;RPL=57.0;RPR=72.0;EPP=6.79775;EPPR=8.18351;DPRA=0.0;ODDS=816.127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8603;PAIRED=0.906977;PAIREDR=0.897059;technology.ILLUMINA=1.0;BaseQRankSum=1.645;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.17;QD=15.26;ReadPosRankSum=0.956;SOR=0.619;ClippingRankSum=-0.137	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.3375:248:136:5153:129:4839:-363.512,0.0,-391.771:121:49:248:117,114:3934,0,3946:1:.:1:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0152891
chr13	33055620	.	T	C	14032.849999999999	REJECT	NS=2;DP=369;DPB=425.0;AC=4;AN=4;AF=1.0;RO=1;AO=424;PRO=0.0;PAO=0.0;QR=16;QA=16293;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=204;SAR=220;SRP=5.18177;SAP=4.32138;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=212.0;RPR=212.0;EPP=58.4033;EPPR=5.18177;DPRA=0.0;ODDS=71.001;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988208;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.71;Dels=0.0;FS=0.0;HaplotypeScore=2.932;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.946;QD=29.65;ReadPosRankSum=0.725;SOR=0.709	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.492:106:0:0:107:4033:-362.956,-28.9603,0.0:106:100:106:0,105:4350,315,0:1:.:1:.:.:.:-0.0017966	1/1:123.492:316:1:16:317:12260:-1100.89,-84.3157,0.0:315:100:316:1,313:13546,933,0:.:1:1:.:.:.:-0.0152891
chr13	33063902	.	G	A	1249.11	REJECT	SOMATIC;NS=2;DP=202;DPB=279.81;AC=1;AN=3;AF=0.0;RO=30;AO=11;PRO=27.7857;PAO=12.8524;QR=1110;QA=146;PQR=998.083;PQA=457.1;SRF=11;SRR=19;SAF=0;SAR=11;SRP=7.64277;SAP=26.8965;AB=0.0544554;ABP=351.306;RUN=1;RPP=7.94546;RPPR=3.0103;RPL=3.0;RPR=8.0;EPP=7.94546;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=snp;CIGAR=1X20M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.3737:43:5:186:2:28:-30.4104,-64.7699,-466.006:2:5:40:.:.:.:.:.:.:-0.0017966	./1:160.002:159:25:924:9:118:-106.486,-191.855,-1233.15:9:6:147:.:.:1:.:.:.:-0.0152891
chr13	33063902	.	G	GA	1249.11	REJECT	NS=2;DP=202;DPB=279.81;AC=2;AN=2;AF=0.25;RO=30;AO=40;PRO=27.7857;PAO=27.7857;QR=1110;QA=910;PQR=998.083;PQA=988.083;SRF=11;SRR=19;SAF=11;SAR=29;SRP=7.64277;SAP=20.5992;AB=0.19802;ABP=163.011;RUN=1;RPP=3.22745;RPPR=3.0103;RPL=21.0;RPR=19.0;EPP=10.8276;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=ins;CIGAR=1M1I20M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.04;FS=2.167;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.449;QD=2.09;RPA=16,17;RU=A;ReadPosRankSum=0.26;SOR=1.067;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.3737:43:5:186:10:222:-30.4104,-14.4791,-27.2374:10:25:40:.:.:.:.:1:.:.:.:-0.0017966	./1:129.501:193:25:924:30:688:-106.486,-57.5777,-128.806:45:28:157:107,60:526,0,940:.:1:1:.:.:.:-0.0152891
chr13	33063902	.	G	GAA	1249.11	REJECT	SOMATIC;NS=2;DP=202;DPB=279.81;AC=1;AN=3;AF=0.0;RO=30;AO=19;PRO=27.7857;PAO=26.7857;QR=1110;QA=476;PQR=998.083;PQA=961.083;SRF=11;SRR=19;SAF=6;SAR=13;SRP=7.64277;SAP=8.61041;AB=0.0940594;ABP=292.139;RUN=1;RPP=8.61041;RPPR=3.0103;RPL=13.0;RPR=6.0;EPP=8.61041;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=ins;CIGAR=1M2I20M;NUMALT=6;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.3737:43:5:186:3:67:-30.4104,-26.5433,-41.1449:3:8:40:.:.:.:.:.:.:-0.0017966	./1:160.002:159:25:924:16:409:-106.486,-81.0541,-156.217:16:11:147:.:.:1:.:.:.:-0.0152891
chr13	33063902	.	G	GAAA	1249.11	REJECT	SOMATIC;NS=2;DP=202;DPB=279.81;AC=1;AN=3;AF=0.0;RO=30;AO=8;PRO=27.7857;PAO=26.7857;QR=1110;QA=180;PQR=998.083;PQA=961.083;SRF=11;SRR=19;SAF=2;SAR=6;SRP=7.64277;SAP=7.35324;AB=0.039604;ABP=374.913;RUN=1;RPP=4.09604;RPPR=3.0103;RPL=5.0;RPR=3.0;EPP=4.09604;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=ins;CIGAR=1M3I20M;NUMALT=6;MEANALT=11.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.3737:43:5:186:4:107:-30.4104,-23.213,-37.5433:4:10:40:.:.:.:.:.:.:-0.0017966	./1:160.002:159:25:924:4:73:-106.486,-108.043,-186.416:4:3:147:.:.:1:.:.:.:-0.0152891
chr13	33063902	.	GA	G	1249.11	REJECT	NS=2;DP=202;DPB=279.81;AC=2;AN=3;AF=0.5;RO=30;AO=64;PRO=27.7857;PAO=24.3857;QR=1110;QA=1957;PQR=998.083;PQA=871.733;SRF=11;SRR=19;SAF=16;SAR=48;SRP=7.64277;SAP=37.7539;AB=0.316832;ABP=61.8766;RUN=1;RPP=11.6962;RPPR=3.0103;RPL=40.0;RPR=24.0;EPP=7.89611;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=del;CIGAR=1M1D19M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.004;FS=2.963;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.369;QD=8.7;ReadPosRankSum=0.639;SOR=1.981;ClippingRankSum=2.1	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:50.18685:41:5:186:12:380:-30.4104,-1.89194,-59.1762:16:40:40:20,20:265,0,104:1:.:1:.:.:.:-0.0017966	0/1:160.002:159:25:924:52:1577:-106.486,0.0,-293.393:52:35:147:.:.:.:.:1:.:.:.:-0.0152891
chr13	33063902	.	GAA	G	1249.11	REJECT	SOMATIC;NS=2;DP=202;DPB=279.81;AC=1;AN=3;AF=0.0;RO=30;AO=15;PRO=27.7857;PAO=21.619;QR=1110;QA=374;PQR=998.083;PQA=750.833;SRF=11;SRR=19;SAF=4;SAR=11;SRP=7.64277;SAP=10.1038;AB=0.0742574;ABP=321.034;RUN=1;RPP=3.15506;RPPR=3.0103;RPL=7.0;RPR=8.0;EPP=3.15506;EPPR=3.29983;DPRA=0.0;ODDS=0.988727;GTI=1;TYPE=del;CIGAR=1M2D18M;NUMALT=6;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.3737:43:5:186:4:122:-30.4104,-27.5567,-103.017:4:10:40:.:.:.:.:.:.:-0.0017966	./1:160.002:159:25:924:11:252:-106.486,-117.048,-469.513:11:7:147:.:.:1:.:.:.:-0.0152891
chr13	33065137	.	C	CA	4256.805	REJECT	NS=2;DP=288;DPB=393.864;AC=2;AN=2;AF=0.5;RO=32;AO=84;PRO=36.7;PAO=41.3667;QR=1186;QA=2676;PQR=1251.1;PQA=1405.6;SRF=15;SRR=17;SAF=45;SAR=39;SRP=3.28173;SAP=3.94093;AB=0.291667;ABP=111.584;RUN=1;RPP=20.4855;RPPR=3.28173;RPL=55.0;RPR=29.0;EPP=4.66476;EPPR=4.09604;DPRA=0.0;ODDS=11.2533;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=4;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.375;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.327;FS=5.4375;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.9625;QD=8.735;RPA=14,15;RU=A;ReadPosRankSum=0.0135;SOR=1.051;STR;ClippingRankSum=-0.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.9362:82:10:368:26:835:-145.138,-66.9434,-89.3122:40:52:76:26,54:995,0,374:1:.:1:.:.:.:-0.0017966	./1:110.9005:250:22:818:58:1841:-488.91,-271.815,-352.689:109:55:187:66,161:2294,0,617:.:1:1:.:.:.:-0.0152891
chr13	33065152	.	TACTTTT	ATACTTTC	6256.88	REJECT	NS=2;DP=288;DPB=393.864;AC=0;AN=4;AF=0.0;RO=32;AO=40;PRO=36.7;PAO=35.3667;QR=1186;QA=1081;PQR=1251.1;PQA=1282.77;SRF=15;SRR=17;SAF=23;SAR=17;SRP=3.28173;SAP=4.96463;AB=0.138889;ABP=329.214;RUN=1;RPP=3.87889;RPPR=3.28173;RPL=22.0;RPR=18.0;EPP=8.43898;EPPR=4.09604;DPRA=0.0;ODDS=11.2533;GTI=0;TYPE=complex;CIGAR=1M1I20M1X;NUMALT=4;MEANALT=18.0;LEN=23;MQM=60.0;MQMR=59.375;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:48.8724:84:10:368:15:438:-145.138,-40.304,-84.1568:15:21:72:.:.:.:.:.:.:-0.0017966	0/0:122.801:204:22:818:25:643:-488.91,-77.0692,-293.359:25:17:147:.:.:.:.:.:.:-0.0152891
chr13	33065152	.	TACTTTT	AATACTTTC	6256.88	REJECT	NS=2;DP=288;DPB=393.864;AC=0;AN=4;AF=0.0;RO=32;AO=33;PRO=36.7;PAO=35.3667;QR=1186;QA=860;PQR=1251.1;PQA=1193.77;SRF=15;SRR=17;SAF=14;SAR=19;SRP=3.28173;SAP=4.65535;AB=0.114583;ABP=374.604;RUN=1;RPP=17.8158;RPPR=3.28173;RPL=24.0;RPR=9.0;EPP=3.60252;EPPR=4.09604;DPRA=0.0;ODDS=11.2533;GTI=0;TYPE=complex;CIGAR=1M2I20M1X;NUMALT=4;MEANALT=18.0;LEN=24;MQM=60.0;MQMR=59.375;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:48.8724:84:10:368:5:134:-145.138,-77.741,-125.339:5:7:72:.:.:.:.:.:.:-0.0017966	0/0:122.801:204:22:818:28:726:-488.91,-115.839,-335.891:28:19:147:.:.:.:.:.:.:-0.0152891
chr13	33065158	.	T	C	5103.825	REJECT	NS=2;DP=283;DPB=393.864;AC=2;AN=2;AF=0.5;RO=32;AO=30;PRO=36.7;PAO=31.2;QR=1186;QA=1062;PQR=1251.1;PQA=1142.77;SRF=15;SRR=17;SAF=14;SAR=16;SRP=3.28173;SAP=3.29983;AB=0.104167;ABP=394.961;RUN=1;RPP=3.0103;RPPR=3.28173;RPL=15.0;RPR=15.0;EPP=13.4334;EPPR=4.09604;DPRA=0.0;ODDS=11.2533;GTI=0;TYPE=snp;CIGAR=21M1X;NUMALT=4;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.375;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.759;Dels=0.0;FS=4.591;HaplotypeScore=20.2372;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=-0.7695;QD=15.975;ReadPosRankSum=0.422;SOR=0.8645;ClippingRankSum=-0.201	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.9362:85:10:368:16:542:-145.138,-50.4841,-95.6603:32:38:79:39,48:1589,0,1264:1:.:1:.:.:.:-0.0017966	./1:110.9005:241:22:818:14:520:-488.91,-155.527,-345.537:70:27:212:151,126:3979,0,5288:.:1:1:.:.:.:-0.0152891
chr13	34509735	.	G	A	12925.849999999999	REJECT	NS=2;DP=342;DPB=392.0;AC=4;AN=4;AF=1.0;RO=0;AO=392;PRO=0.0;PAO=0.0;QR=0;QA=15015;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=147;SAR=245;SRP=0.0;SAP=56.2114;AB=0.0;ABP=0.0;RUN=1;RPP=49.8964;RPPR=0.0;RPL=242.0;RPR=150.0;EPP=65.2518;EPPR=0.0;DPRA=0.0;ODDS=66.6852;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.23;SOR=1.274	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.406:98:0:0:100:3789:-341.05,-27.0859,0.0:98:100:98:0,97:3845,290,0:1:.:1:.:.:.:-0.0017966	1/1:122.406:292:0:0:292:11226:-1009.79,-79.1021,0.0:292:100:292:0,292:12577,873,0:.:1:1:.:.:.:-0.0152891
chr13	35252882	.	T	C	2766.37	PASS	SOMATIC;NS=2;DP=425;DPB=425.0;AC=1;AN=3;AF=0.25;RO=320;AO=105;PRO=0.0;PAO=0.0;QR=12303;QA=4096;PQR=0.0;PQA=0.0;SRF=136;SRR=184;SAF=49;SAR=56;SRP=18.6449;SAP=4.02365;AB=0.33123;ABP=81.4368;RUN=1;RPP=3.19643;RPPR=3.03744;RPL=51.0;RPR=54.0;EPP=8.98702;EPPR=3.25459;DPRA=2.93519;ODDS=68.3339;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990625;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.182;Dels=0.0;FS=1.426;HaplotypeScore=7.8112;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.533;QD=11.45;ReadPosRankSum=-0.221;SOR=0.603	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.944:106:108:4118:0:0:0.0,-29.2511,-370.624:0:0:106:105,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:119.472:317:212:8185:105:4096:-282.555,0.0,-650.297:105:33:317:206,100:39.0:0.324:2:3658,0,8171:.:1:1:.:.:1:-0.0152891
chr13	40501283	.	A	G	12979.55	REJECT	NS=2;DP=346;DPB=398.0;AC=4;AN=4;AF=1.0;RO=0;AO=398;PRO=0.0;PAO=0.0;QR=0;QA=15107;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=262;SAR=136;SRP=0.0;SAP=89.6291;AB=0.0;ABP=0.0;RUN=1;RPP=55.4093;RPPR=0.0;RPL=150.0;RPR=248.0;EPP=14.5551;EPPR=0.0;DPRA=0.0;ODDS=67.8859;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997487;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.31;SOR=1.4415	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3810:-342.916,-27.6074,0.0:101:100:101:0,100:3837,299,0:1:.:1:.:.:.:-0.0017966	1/1:129.501:295:0:0:296:11297:-1016.14,-80.1622,0.0:295:100:295:0,295:12591,876,0:.:1:1:.:.:.:-0.0152891
chr13	41135488	.	C	CA	934.26	REJECT	NS=2;DP=97;DPB=182.828;AC=2;AN=2;AF=0.5;RO=12;AO=22;PRO=41.3214;PAO=38.3214;QR=405;QA=700;PQR=1370.21;PQA=1263.21;SRF=10;SRR=2;SAF=17;SAR=5;SRP=14.5915;SAP=17.2236;AB=0.226804;ABP=65.8935;RUN=1;RPP=4.58955;RPPR=5.9056;RPL=9.0;RPR=13.0;EPP=12.8806;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=ins;CIGAR=1M1I28M;NUMALT=6;MEANALT=18.5;LEN=1;MQM=59.0909;MQMR=60.0;PAIRED=0.954545;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.4225;FS=2.422;MLEAC=1;MLEAF=0.5;MQ=59.225;MQRankSum=-0.6355;QD=4.26;RPA=19,20;RU=A;ReadPosRankSum=0.328;SOR=1.694;STR;ClippingRankSum=-0.196	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.1417:26:3:103:5:153:-31.7261,-20.108,-27.2298:10:46:21:8,16:208,0,50:1:.:1:.:.:.:-0.0017966	./1:65.0523:92:9:302:17:547:-113.592,-72.2392,-101.082:30:48:60:30,44:521,0,229:.:1:1:.:.:.:-0.0152891
chr13	41135488	.	C	CAA	1384.79	REJECT	NS=2;DP=97;DPB=182.828;AC=0;AN=4;AF=0.0;RO=12;AO=4;PRO=41.3214;PAO=38.3214;QR=405;QA=145;PQR=1370.21;PQA=1263.21;SRF=10;SRR=2;SAF=4;SAR=0;SRP=14.5915;SAP=11.6962;AB=0.0412371;ABP=180.332;RUN=1;RPP=5.18177;RPPR=5.9056;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=ins;CIGAR=1M2I28M;NUMALT=6;MEANALT=18.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.2834:28:3:103:2:71:-31.7261,-26.6843,-34.6098:2:11:19:.:.:.:.:.:.:-0.0017966	0/0:31.1046:69:9:302:2:74:-113.592,-110.726,-143.591:2:4:46:.:.:.:.:.:.:-0.0152891
chr13	41135488	.	CA	C	1384.79	REJECT	NS=2;DP=97;DPB=182.828;AC=0;AN=4;AF=0.0;RO=12;AO=11;PRO=41.3214;PAO=35.8214;QR=405;QA=320;PQR=1370.21;PQA=1173.21;SRF=10;SRR=2;SAF=8;SAR=3;SRP=14.5915;SAP=7.94546;AB=0.113402;ABP=128.933;RUN=1;RPP=3.20771;RPPR=5.9056;RPL=5.0;RPR=6.0;EPP=7.94546;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=del;CIGAR=1M1D27M;NUMALT=6;MEANALT=18.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.2834:28:3:103:3:100:-31.7261,-26.3427,-87.4336:3:16:19:.:.:.:.:.:.:-0.0017966	0/0:31.1046:69:9:302:8:220:-113.592,-123.592,-414.676:8:17:46:.:.:.:.:.:.:-0.0152891
chr13	41135508	.	TTCTATATC	ATTCTATATT	1384.79	REJECT	NS=2;DP=97;DPB=182.828;AC=2;AN=2;AF=0.5;RO=12;AO=7;PRO=41.3214;PAO=10.2381;QR=405;QA=112;PQR=1370.21;PQA=320.381;SRF=10;SRR=2;SAF=7;SAR=0;SRP=14.5915;SAP=18.2106;AB=0.0721649;ABP=157.23;RUN=1;RPP=5.80219;RPPR=5.9056;RPL=5.0;RPR=2.0;EPP=5.80219;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=complex;CIGAR=1M1I27M1X;NUMALT=6;MEANALT=18.5;LEN=30;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.2834:28:3:103:2:32:-31.7261,-3.96378,-305.738:2:11:19:.:.:1:.:.:.:-0.0017966	./1:31.1046:69:9:302:5:80:-113.592,-11.1963,-1004.68:5:11:46:.:.:1:.:.:.:-0.0152891
chr13	41135508	.	TTCTATATC	ATTTTATATT	1384.79	REJECT	NS=2;DP=97;DPB=182.828;AC=0;AN=4;AF=0.0;RO=12;AO=6;PRO=41.3214;PAO=10.7381;QR=405;QA=96;PQR=1370.21;PQA=328.381;SRF=10;SRR=2;SAF=6;SAR=0;SRP=14.5915;SAP=16.0391;AB=0.0618557;ABP=164.751;RUN=1;RPP=8.80089;RPPR=5.9056;RPL=5.0;RPR=1.0;EPP=8.80089;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=complex;CIGAR=1M1I21M1X5M1X;NUMALT=6;MEANALT=18.5;LEN=30;MQM=52.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.2834:28:3:103:2:32:-31.7261,-5.13561,-307.172:2:11:19:.:.:.:.:.:.:-0.0017966	0/0:31.1046:69:9:302:4:64:-113.592,-15.8756,-1010.41:4:9:46:.:.:.:.:.:.:-0.0152891
chr13	41135508	.	TTCTATATC	AATTCTATATT	1384.79	REJECT	NS=2;DP=97;DPB=182.828;AC=0;AN=4;AF=0.0;RO=12;AO=3;PRO=41.3214;PAO=10.2381;QR=405;QA=48;PQR=1370.21;PQA=320.381;SRF=10;SRR=2;SAF=3;SAR=0;SRP=14.5915;SAP=9.52472;AB=0.0309278;ABP=188.391;RUN=1;RPP=3.73412;RPPR=5.9056;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=5.9056;DPRA=0.0;ODDS=0.349831;GTI=1;TYPE=complex;CIGAR=1M2I27M1X;NUMALT=6;MEANALT=18.5;LEN=31;MQM=53.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:2.2834:28:3:103:2:32:-31.7261,-3.96528,-305.74:2:11:19:.:.:.:.:.:.:-0.0017966	0/0:31.1046:69:9:302:1:16:-113.592,-15.8753,-1010.41:1:2:46:.:.:.:.:.:.:-0.0152891
chr13	41136080	.	C	A	12.522	REJECT	NS=2;DP=82;DPB=177.385;AC=2;AN=2;AF=0.0;RO=16;AO=6;PRO=68.8333;PAO=40.6667;QR=590;QA=118;PQR=2439.0;PQA=1431.83;SRF=4;SRR=12;SAF=3;SAR=3;SRP=11.6962;SAP=3.0103;AB=0.0677966;ABP=98.7391;RUN=1;RPP=16.0391;RPPR=37.7539;RPL=0.0;RPR=6.0;EPP=3.0103;EPPR=11.6962;DPRA=0.0;ODDS=1.82234;GTI=0;TYPE=snp;CIGAR=1X38M;NUMALT=3;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.81506:23:4:142:2:70:0.0,-4.25826,-107.905:2:33:6:.:.:1:.:.:.:-0.0017966	./1:12.522:59:12:448:4:48:-5.20045,-31.6797,-378.142:4:15:27:.:.:1:.:.:.:-0.0152891
chr13	41136080	.	C	CA	12.522	REJECT	NS=2;DP=82;DPB=177.385;AC=2;AN=3;AF=0.25;RO=16;AO=6;PRO=68.8333;PAO=64.8333;QR=590;QA=116;PQR=2439.0;PQA=2263.0;SRF=4;SRR=12;SAF=1;SAR=5;SRP=11.6962;SAP=8.80089;AB=0.101695;ABP=84.3117;RUN=1;RPP=4.45795;RPPR=37.7539;RPL=2.0;RPR=4.0;EPP=3.0103;EPPR=11.6962;DPRA=2.56522;ODDS=1.82234;GTI=0;TYPE=ins;CIGAR=1M1I38M;NUMALT=3;MEANALT=30.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.833333;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.81506:23:4:142:0:0:0.0,-0.365463,-14.6999:0:0:6:.:.:1:.:.:.:-0.0017966	0/1:12.522:59:12:448:6:116:-5.20045,0.0,-49.8349:6:22:27:.:.:1:.:.:.:-0.0152891
chr13	41136080	.	CA	C	12.522	REJECT	NS=2;DP=82;DPB=177.385;AC=2;AN=2;AF=0.0;RO=16;AO=5;PRO=68.8333;PAO=50.6667;QR=590;QA=100;PQR=2439.0;PQA=1742.17;SRF=4;SRR=12;SAF=1;SAR=4;SRP=11.6962;SAP=6.91895;AB=0.0847458;ABP=91.3782;RUN=1;RPP=13.8677;RPPR=37.7539;RPL=0.0;RPR=5.0;EPP=6.91895;EPPR=11.6962;DPRA=2.56522;ODDS=1.82234;GTI=0;TYPE=del;CIGAR=1M1D37M;NUMALT=3;MEANALT=30.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.867;FS=7.319;MLEAC=1;MLEAF=0.5;MQ=57.81;MQRankSum=-1.006;QD=1.0;RPA=19,18;RU=A;ReadPosRankSum=-0.069;SOR=1.367;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.81506:23:4:142:0:0:0.0,-9.20976,-106.368:0:0:6:.:.:.:.:1:.:.:.:-0.0017966	./1:55.761:85:12:448:5:100:-5.20045,-6.28023,-150.595:16:26:54:54,28:150,0,606:.:1:1:.:.:.:-0.0152891
chr13	41137804	.	A	C	9121.485	REJECT	NS=2;DP=408;DPB=478.0;AC=3;AN=4;AF=0.75;RO=135;AO=343;PRO=0.0;PAO=0.0;QR=5191;QA=13037;PQR=0.0;PQA=0.0;SRF=62;SRR=73;SAF=162;SAR=181;SRP=4.95658;SAP=5.29573;AB=0.602941;ABP=34.305;RUN=1;RPP=3.16857;RPPR=3.41242;RPL=174.0;RPR=169.0;EPP=4.08021;EPPR=6.62942;DPRA=0.0;ODDS=87.0648;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991254;PAIREDR=0.992593;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.267;Dels=0.0;FS=0.9125;HaplotypeScore=8.8644;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.679;QD=26.995;ReadPosRankSum=0.457;SOR=0.7425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:137:0:0:138:5312:-477.988,-37.3858,0.0:137:100:137:0,137:5710,412,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:339:135:5191:205:7725:-602.756,0.0,-374.842:204:60:339:135,203:7527,0,4815:.:1:1:.:.:.:-0.0152891
chr13	41138389	.	C	T	8146.16	REJECT	NS=2;DP=381;DPB=430.0;AC=3;AN=4;AF=0.75;RO=123;AO=307;PRO=0.0;PAO=0.0;QR=4469;QA=11050;PQR=0.0;PQA=0.0;SRF=64;SRR=59;SAF=158;SAR=149;SRP=3.45166;SAP=3.58323;AB=0.631737;ABP=53.3573;RUN=1;RPP=3.01737;RPPR=5.14646;RPL=154.0;RPR=153.0;EPP=3.18713;EPPR=6.98251;DPRA=0.0;ODDS=60.8163;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996743;PAIREDR=0.98374;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.719;Dels=0.0;FS=0.2115;HaplotypeScore=23.2434;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.764;QD=26.22;ReadPosRankSum=1.851;SOR=0.781	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:96:3478:-313.103,-25.9862,0.0:93:100:93:0,90:3674,270,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:333:123:4469:211:7572:-590.729,0.0,-311.783:210:63:333:123,210:7342,0,4013:.:1:1:.:.:.:-0.0152891
chr13	41138419	.	TA	T	822.012	REJECT	NS=2;DP=322;DPB=403.95;AC=2;AN=4;AF=0.5;RO=201;AO=50;PRO=104.5;PAO=72.5;QR=7219;QA=1730;PQR=3626.5;PQA=2558.5;SRF=99;SRR=102;SAF=28;SAR=22;SRP=3.10753;SAP=4.57376;AB=0.15528;ABP=335.367;RUN=1;RPP=3.18402;RPPR=3.88537;RPL=24.0;RPR=26.0;EPP=3.18402;EPPR=3.10753;DPRA=0.0;ODDS=45.8465;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=1;MEANALT=19.0;LEN=1;MQM=60.6;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985075;technology.ILLUMINA=1.0;BaseQRankSum=0.032;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.624;QD=1.19;ReadPosRankSum=-0.392;SOR=0.459;ClippingRankSum=0.623	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.1775:83:56:2011:10:379:-20.6259,0.0,-184.965:13:17:76:69,17:148,0,1590:1:.:1:.:.:.:-0.0017966	0/1:135.355:242:145:5208:40:1351:-66.9132,0.0,-492.758:40:22:185:.:.:.:.:1:.:.:.:-0.0152891
chr13	41139082	.	G	GAGTCGGGGAACCCCGACATGGTGT	1240.73	PASS	DP=101;AC=2;AN=4;AF=0.5;END=41139082;HOMLEN=29;HOMSEQ=AGTCGGGGAACCCCGACATGGTGTAGTCGGGGAACCCCGACATGGTGTA;SVLEN=24;SVTYPE=INS;BaseQRankSum=1.22;FS=5.324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.043;QD=12.28;ReadPosRankSum=0.493;SOR=0.86;ClippingRankSum=1.93	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,37:37:43:90:54:99.0:1278,0,1067:1:.:.:1:.:.:-0.0017966	0/1:280,32:32:10:312:.:.:.:.:.:.:1:.:.:-0.0152891
chr13	41139712	.	T	C	9896.835	REJECT	NS=2;DP=399;DPB=460.0;AC=3;AN=4;AF=0.75;RO=108;AO=352;PRO=0.0;PAO=0.0;QR=4187;QA=13391;PQR=0.0;PQA=0.0;SRF=61;SRR=47;SAF=189;SAR=163;SRP=6.95112;SAP=7.18051;AB=0.681416;ABP=99.9195;RUN=1;RPP=7.84676;RPPR=3.73412;RPL=190.0;RPR=162.0;EPP=5.00904;EPPR=5.9056;DPRA=0.0;ODDS=76.4898;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994318;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.874;Dels=0.0;FS=0.701;HaplotypeScore=12.528;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.217;QD=27.43;ReadPosRankSum=-0.289;SOR=0.7175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.642:120:0:0:121:4634:-417.048,-32.7931,0.0:120:100:120:0,119:4707,357,0:1:.:1:.:.:.:-0.0017966	0/1:119.642:338:108:4187:231:8757:-695.83,0.0,-284.791:230:68:338:108,230:8764,0,3679:.:1:1:.:.:.:-0.0152891
chr13	41140516	.	A	AT	250.309	REJECT	NS=2;DP=122;DPB=178.783;AC=2;AN=3;AF=0.25;RO=60;AO=17;PRO=39.05;PAO=20.55;QR=2203;QA=372;PQR=1399.32;PQA=720.817;SRF=5;SRR=55;SAF=2;SAR=15;SRP=93.4883;SAP=24.5973;AB=0.139344;ABP=140.845;RUN=1;RPP=13.3567;RPPR=12.2752;RPL=13.0;RPR=4.0;EPP=6.20364;EPPR=6.62942;DPRA=0.0;ODDS=13.0456;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:55.5705:29:16:577:5:139:-10.4279,0.0,-69.8061:5:19:27:.:.:1:.:.:.:-0.0017966	./1:85.8498:93:44:1626:12:233:-23.8596,-9.7907,-176.251:12:14:83:.:.:1:.:.:.:-0.0152891
chr13	41140516	.	AT	A	250.309	REJECT	NS=2;DP=122;DPB=178.783;AC=2;AN=3;AF=0.25;RO=60;AO=21;PRO=39.05;PAO=21.05;QR=2203;QA=523;PQR=1399.32;PQA=749.65;SRF=5;SRR=55;SAF=3;SAR=18;SRP=93.4883;SAP=26.2761;AB=0.172131;ABP=116.924;RUN=1;RPP=11.386;RPPR=12.2752;RPL=15.0;RPR=6.0;EPP=8.07707;EPPR=6.62942;DPRA=0.0;ODDS=13.0456;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=60.4762;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.428;FS=1.302;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.206;QD=0.9;RPA=16,15;RU=T;ReadPosRankSum=1.128;SOR=0.43;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5705:29:16:577:4:99:-10.4279,-6.58014,-83.7023:4:15:27:.:.:.:.:1:.:.:.:-0.0017966	0/1:92.4249:125:44:1626:17:424:-23.8596,0.0,-213.408:22:22:99:88,28:179,0,1318:.:1:1:.:.:.:-0.0152891
chr13	41140516	.	ATT	A	250.309	REJECT	NS=2;DP=122;DPB=178.783;AC=2;AN=2;AF=0.0;RO=60;AO=7;PRO=39.05;PAO=17.05;QR=2203;QA=183;PQR=1399.32;PQA=595.4;SRF=5;SRR=55;SAF=2;SAR=5;SRP=93.4883;SAP=5.80219;AB=0.0752688;ABP=148.732;RUN=1;RPP=10.7656;RPPR=12.2752;RPL=6.0;RPR=1.0;EPP=10.7656;EPPR=6.62942;DPRA=0.0;ODDS=13.0456;GTI=0;TYPE=del;CIGAR=1M2D20M;NUMALT=4;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5705:29:16:577:0:0:-10.4279,-18.8373,-110.257:0:0:27:.:.:1:.:.:.:-0.0017966	./1:85.8498:93:44:1626:7:183:-23.8596,-28.8944,-277.523:7:8:83:.:.:1:.:.:.:-0.0152891
chr13	41140533	.	A	T	250.309	REJECT	NS=2;DP=122;DPB=178.783;AC=2;AN=2;AF=0.0;RO=60;AO=5;PRO=39.05;PAO=18.3;QR=2203;QA=192;PQR=1399.32;PQA=642.817;SRF=5;SRR=55;SAF=1;SAR=4;SRP=93.4883;SAP=6.91895;AB=0.0409836;ABP=226.28;RUN=1;RPP=3.44459;RPPR=12.2752;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=6.62942;DPRA=0.0;ODDS=13.0456;GTI=0;TYPE=snp;CIGAR=17M1X5M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=56.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:55.5705:29:16:577:2:75:-10.4279,-7.12713,-97.561:2:7:27:.:.:1:.:.:.:-0.0017966	./1:85.8498:93:44:1626:3:117:-23.8596,-26.5589,-331.066:3:4:83:.:.:1:.:.:.:-0.0152891
chr13	41140619	.	G	A	487.767	PASS	SOMATIC;NS=2;DP=90;DPB=90.0;AC=1;AN=3;AF=0.25;RO=68;AO=22;PRO=0.0;PAO=0.0;QR=2364;QA=835;PQR=0.0;PQA=0.0;SRF=18;SRR=50;SAF=2;SAR=20;SRP=35.7101;SAP=34.9902;AB=0.34375;ABP=16.582;RUN=1;RPP=12.8806;RPPR=9.26925;RPL=6.0;RPR=16.0;EPP=6.56362;EPPR=9.26925;DPRA=2.46154;ODDS=17.2169;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.4091;MQMR=57.5441;PAIRED=1.0;PAIREDR=0.985294;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.0;Dels=0.0;FS=7.226;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=2.141;QD=11.47;ReadPosRankSum=0.742;SOR=2.066	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:74.7722:26:26:911:0:0:0.0,-7.05125,-82.2005:0:0:26:26,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:124.7575:64:42:1453:22:835:-57.7785,0.0,-112.227:22:34:64:42,22:37.0:0.344:2:762,0,1362:.:1:1:.:.:1:-0.0152891
chr13	41141232	.	T	C	8333.619999999999	REJECT	NS=2;DP=353;DPB=404.0;AC=3;AN=4;AF=0.75;RO=113;AO=291;PRO=0.0;PAO=0.0;QR=4390;QA=11314;PQR=0.0;PQA=0.0;SRF=64;SRR=49;SAF=161;SAR=130;SRP=7.33403;SAP=10.1814;AB=0.628289;ABP=46.4683;RUN=1;RPP=7.67412;RPPR=3.49071;RPL=133.0;RPR=158.0;EPP=3.91321;EPPR=3.49071;DPRA=0.0;ODDS=63.3605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996564;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.765;Dels=0.0;FS=1.288;HaplotypeScore=4.966;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.748;QD=27.18;ReadPosRankSum=-0.302;SOR=0.864	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:100:3863:-347.689,-27.0911,0.0:100:100:100:0,100:4119,300,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:303:113:4390:191:7451:-587.796,0.0,-312.515:190:63:303:112,190:7412,0,3979:.:1:1:.:.:.:-0.0152891
chr13	41141282	.	C	G	9504.935000000001	REJECT	NS=2;DP=412;DPB=473.0;AC=3;AN=4;AF=0.75;RO=132;AO=341;PRO=0.0;PAO=0.0;QR=5103;QA=13035;PQR=0.0;PQA=0.0;SRF=59;SRR=73;SAF=182;SAR=159;SRP=6.23461;SAP=6.37895;AB=0.625;ABP=50.7827;RUN=1;RPP=6.99027;RPPR=6.23461;RPL=158.0;RPR=183.0;EPP=3.06761;EPPR=12.4858;DPRA=0.0;ODDS=76.4498;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994135;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.177;Dels=0.0;FS=2.864;HaplotypeScore=6.9224;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.067;QD=26.315;ReadPosRankSum=0.416;SOR=0.7785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.204:120:0:0:121:4637:-417.291,-32.7757,0.0:120:100:120:0,120:4978,361,0:1:.:1:.:.:.:-0.0017966	0/1:120.204:351:132:5103:220:8398:-660.026,0.0,-363.616:219:62:351:132,219:8332,0,4651:.:1:1:.:.:.:-0.0152891
chr13	41141886	.	C	G	2861.55	REJECT	NS=2;DP=120;DPB=140.0;AC=3;AN=4;AF=0.75;RO=31;AO=109;PRO=0.0;PAO=0.0;QR=1164;QA=4093;PQR=0.0;PQA=0.0;SRF=5;SRR=26;SAF=14;SAR=95;SRP=33.9012;SAP=133.717;AB=0.696078;ABP=37.0726;RUN=1;RPP=10.2021;RPPR=4.76149;RPL=64.0;RPR=45.0;EPP=5.42083;EPPR=6.44263;DPRA=0.0;ODDS=24.7271;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8532;MQMR=60.0;PAIRED=0.981651;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.715;Dels=0.0;FS=2.551;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=59.925;MQRankSum=0.932;QD=25.385;ReadPosRankSum=0.335;SOR=2.234	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:103.194:38:0:0:38:1448:-130.568,-10.3129,0.0:38:100:38:0,38:1608,114,0:1:.:1:.:.:.:-0.0017966	0/1:122.4465:101:31:1164:71:2645:-210.438,0.0,-77.1589:70:69:101:31,69:2548,0,1002:.:1:1:.:.:.:-0.0152891
chr13	41141998	.	G	A	2543.17	REJECT	NS=2;DP=105;DPB=121.0;AC=3;AN=4;AF=0.75;RO=28;AO=93;PRO=0.0;PAO=0.0;QR=1033;QA=3511;PQR=0.0;PQA=0.0;SRF=17;SRR=11;SAF=53;SAR=40;SRP=5.80219;SAP=6.95631;AB=0.685393;ABP=29.5803;RUN=1;RPP=3.03365;RPPR=5.80219;RPL=46.0;RPR=47.0;EPP=4.90158;EPPR=4.25114;DPRA=0.0;ODDS=21.0082;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6022;MQMR=60.0;PAIRED=0.989247;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.384;Dels=0.0;FS=0.442;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.75;MQ=59.72;MQRankSum=-0.702;QD=26.72;ReadPosRankSum=0.358;SOR=0.9045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:93.6187:32:0:0:32:1238:-111.7,-8.69778,0.0:32:100:32:0,32:1391,96,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:89:28:1033:61:2273:-180.464,0.0,-68.8974:61:69:89:28,61:2250,0,874:.:1:1:.:.:.:-0.0152891
chr13	41142092	.	A	G	2830.815	REJECT	NS=2;DP=131;DPB=147.0;AC=3;AN=4;AF=0.75;RO=44;AO=102;PRO=0.0;PAO=0.0;QR=1659;QA=3833;PQR=0.0;PQA=0.0;SRF=31;SRR=13;SAF=81;SAR=21;SRP=19.0002;SAP=79.6505;AB=0.612069;ABP=15.6647;RUN=1;RPP=3.35092;RPPR=15.6443;RPL=49.0;RPR=53.0;EPP=3.7767;EPPR=12.6832;DPRA=0.0;ODDS=20.3366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0882;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.206;Dels=0.0;FS=5.0425;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.75;MQ=60.05;MQRankSum=-0.814;QD=25.88;ReadPosRankSum=-0.538;SOR=1.696	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:87.16035:29:0:0:31:1125:-101.51,-8.4061,0.0:29:100:29:0,28:1161,86,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:116:44:1659:71:2708:-212.561,0.0,-118.159:71:62:115:44,71:2683,0,1526:.:1:1:.:.:.:-0.0152891
chr13	41142104	.	T	TA	1796.18	REJECT	NS=2;DP=153;DPB=189.65;AC=2;AN=2;AF=0.0;RO=58;AO=11;PRO=23.25;PAO=21.25;QR=2162;QA=370;PQR=820.583;PQA=744.583;SRF=42;SRR=16;SAF=9;SAR=2;SRP=28.3192;SAP=12.6832;AB=0.0718954;ABP=246.57;RUN=1;RPP=7.94546;RPPR=10.3484;RPL=8.0;RPR=3.0;EPP=3.20771;EPPR=3.16006;DPRA=0.0;ODDS=53.7303;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.943:33:11:412:4:147:-33.3144,-24.4109,-60.5305:4:13:31:.:.:1:.:.:.:-0.0017966	./1:140.943:120:47:1750:7:223:-164.857,-159.694,-305.799:7:6:117:.:.:1:.:.:.:-0.0152891
chr13	41142104	.	TA	T	1564.955	REJECT	NS=2;DP=144;DPB=189.65;AC=2;AN=4;AF=0.5;RO=58;AO=72;PRO=23.25;PAO=23.75;QR=2162;QA=2514;PQR=820.583;PQA=825.583;SRF=42;SRR=16;SAF=61;SAR=11;SRP=28.3192;SAP=78.4086;AB=0.470588;ABP=4.1599;RUN=1;RPP=42.0968;RPPR=10.3484;RPL=18.0;RPR=54.0;EPP=12.7819;EPPR=3.16006;DPRA=0.0;ODDS=53.7303;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=60.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.404;FS=5.07;MLEAC=1;MLEAF=0.5;MQ=60.385;MQRankSum=0.217;QD=7.955;RPA=12,11;RU=A;ReadPosRankSum=-0.118;SOR=1.475;STR;ClippingRankSum=-2.135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9715:32:11:412:15:457:-33.3144,0.0,-39.4834:14:46:31:17,14:263,0,298:1:.:1:.:.:.:-0.0017966	0/1:119.9715:128:47:1750:57:2057:-164.857,0.0,-131.735:61:51:120:57,66:1371,0,1005:.:1:1:.:.:.:-0.0152891
chr13	41142104	.	TAA	T	1796.18	REJECT	NS=2;DP=153;DPB=189.65;AC=2;AN=2;AF=0.0;RO=58;AO=7;PRO=23.25;PAO=19.75;QR=2162;QA=241;PQR=820.583;PQA=687.25;SRF=42;SRR=16;SAF=5;SAR=2;SRP=28.3192;SAP=5.80219;AB=0.0457516;ABP=277.226;RUN=1;RPP=10.7656;RPPR=10.3484;RPL=1.0;RPR=6.0;EPP=3.32051;EPPR=3.16006;DPRA=0.0;ODDS=53.7303;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=5.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.943:33:11:412:1:39:-33.3144,-34.6857,-87.6517:1:3:31:.:.:1:.:.:.:-0.0017966	./1:140.943:120:47:1750:6:202:-164.857,-162.94,-328.197:6:5:117:.:.:1:.:.:.:-0.0152891
chr13	41142223	.	C	T	8152.775000000001	REJECT	NS=2;DP=350;DPB=391.0;AC=3;AN=4;AF=0.75;RO=115;AO=276;PRO=0.0;PAO=0.0;QR=4420;QA=10763;PQR=0.0;PQA=0.0;SRF=72;SRR=43;SAF=167;SAR=109;SRP=18.8904;SAP=29.4771;AB=0.629032;ABP=47.8407;RUN=1;RPP=3.04177;RPPR=3.18024;RPL=139.0;RPR=137.0;EPP=21.1374;EPPR=5.29507;DPRA=0.0;ODDS=51.5703;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996377;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.229;Dels=0.0;FS=1.628;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.167;QD=27.68;ReadPosRankSum=2.52;SOR=1.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.808:80:0:0:81:3185:-286.753,-21.9707,0.0:80:100:80:0,79:3331,238,0:1:.:1:.:.:.:-0.0017966	0/1:118.808:310:115:4420:195:7578:-597.631,0.0,-313.566:195:63:310:115,195:7593,0,4001:.:1:1:.:.:.:-0.0152891
chr13	41143148	.	T	C	2547.73	REJECT	NS=2;DP=461;DPB=529.0;AC=2;AN=4;AF=0.5;RO=405;AO=123;PRO=0.0;PAO=0.0;QR=14902;QA=4567;PQR=0.0;PQA=0.0;SRF=210;SRR=195;SAF=58;SAR=65;SRP=4.21667;SAP=3.87536;AB=0.232514;ABP=331.765;RUN=1;RPP=3.45166;RPPR=6.36134;RPL=59.0;RPR=64.0;EPP=3.16919;EPPR=8.16286;DPRA=0.0;ODDS=137.706;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99187;PAIREDR=0.992593;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.553;Dels=0.0;FS=2.4315;HaplotypeScore=7.7786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.449;QD=10.51;ReadPosRankSum=-0.066;SOR=0.775;ClippingRankSum=-0.666	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:132:61:2210:73:2712:-207.818,0.0,-162.606:73:55:132:57,74:2501,0,1806:1:.:1:.:.:.:-0.0017966	0/1:129.501:394:344:12692:50:1855:-60.3287,0.0,-1034.89:50:13:393:342,50:928,0,12839:.:1:1:.:.:.:-0.0152891
chr13	41143720	.	C	T	10213.035	REJECT	NS=2;DP=423;DPB=484.0;AC=3;AN=4;AF=0.75;RO=128;AO=355;PRO=0.0;PAO=0.0;QR=4790;QA=13753;PQR=0.0;PQA=0.0;SRF=67;SRR=61;SAF=160;SAR=195;SRP=3.62103;SAP=10.5034;AB=0.647383;ABP=71.4984;RUN=1;RPP=6.83331;RPPR=4.09604;RPL=165.0;RPR=190.0;EPP=6.83331;EPPR=3.62103;DPRA=0.0;ODDS=75.8909;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994366;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.083;Dels=0.0;FS=4.549;HaplotypeScore=8.8307;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.34;QD=27.7;ReadPosRankSum=-2.582;SOR=0.836	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.939:118:0:0:120:4641:-417.685,-32.533,0.0:117:100:117:0,115:4681,346,0:1:.:1:.:.:.:-0.0017966	0/1:118.939:363:128:4790:235:9112:-721.248,0.0,-332.507:235:65:363:128,235:9140,0,4262:.:1:1:.:.:.:-0.0152891
chr13	41143881	.	C	A	8502.935000000001	REJECT	NS=2;DP=393;DPB=447.0;AC=3;AN=4;AF=0.75;RO=132;AO=315;PRO=0.0;PAO=0.0;QR=4975;QA=11779;PQR=0.0;PQA=0.0;SRF=48;SRR=84;SAF=96;SAR=219;SRP=24.3302;SAP=107.303;AB=0.611765;ABP=39.8998;RUN=1;RPP=16.9698;RPPR=17.8158;RPL=180.0;RPR=135.0;EPP=3.34808;EPPR=6.23461;DPRA=0.0;ODDS=67.6644;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990476;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.654;Dels=0.0;FS=0.708;HaplotypeScore=9.7898;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.709;QD=26.575;ReadPosRankSum=0.642;SOR=1.529	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:107:4040:-363.583,-28.9603,0.0:104:100:104:0,102:4024,305,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:340:132:4975:208:7739:-604.051,0.0,-355.469:208:61:340:132,208:7538,0,4508:.:1:1:.:.:.:-0.0152891
chr13	41144454	.	A	T	5860.605	REJECT	NS=2;DP=268;DPB=302.0;AC=3;AN=4;AF=0.75;RO=88;AO=213;PRO=0.0;PAO=0.0;QR=3385;QA=7979;PQR=0.0;PQA=0.0;SRF=64;SRR=24;SAF=168;SAR=45;SRP=42.4916;SAP=157.246;AB=0.627119;ABP=36.1345;RUN=1;RPP=38.4981;RPPR=7.84676;RPL=77.0;RPR=136.0;EPP=3.50984;EPPR=19.6912;DPRA=0.0;ODDS=41.5629;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.8864;PAIRED=0.981221;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.064;Dels=0.0;FS=2.9025;HaplotypeScore=24.5544;MLEAC=1;MLEAF=0.75;MQ=59.99;MQRankSum=-0.693;QD=27.115;ReadPosRankSum=-0.181;SOR=1.838	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.8895:65:0:0:65:2438:-219.603,-17.6246,0.0:64:100:64:0,64:2560,193,0:1:.:1:.:.:.:-0.0017966	0/1:125.8895:235:88:3385:148:5541:-434.566,0.0,-240.376:147:63:235:88,147:5464,0,3091:.:1:1:.:.:.:-0.0152891
chr13	41144507	.	G	A	9662.885	REJECT	NS=2;DP=429;DPB=484.0;AC=3;AN=4;AF=0.75;RO=140;AO=343;PRO=0.0;PAO=0.0;QR=5197;QA=13007;PQR=0.0;PQA=0.0;SRF=84;SRR=56;SAF=223;SAR=120;SRP=15.1705;SAP=70.174;AB=0.625995;ABP=54.9932;RUN=1;RPP=15.8302;RPPR=9.21451;RPL=149.0;RPR=194.0;EPP=5.29573;EPPR=3.0103;DPRA=0.0;ODDS=67.7597;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982507;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.628;Dels=0.0;FS=2.121;HaplotypeScore=16.4885;MLEAC=1;MLEAF=0.75;MQ=59.99;MQRankSum=-1.048;QD=24.605;ReadPosRankSum=0.703;SOR=1.1985	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:107:4104:-369.395,-29.0017,0.0:105:100:105:0,103:4277,310,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:375:140:5197:236:8903:-698.991,0.0,-365.662:234:62:374:140,233:8813,0,4645:.:1:1:.:.:.:-0.0152891
chr13	41144919	.	G	A	9724.535	REJECT	NS=2;DP=422;DPB=490.0;AC=3;AN=4;AF=0.75;RO=138;AO=352;PRO=0.0;PAO=0.0;QR=5295;QA=13538;PQR=0.0;PQA=0.0;SRF=74;SRR=64;SAF=179;SAR=173;SRP=4.58383;SAP=3.23238;AB=0.611268;ABP=41.1854;RUN=1;RPP=8.56236;RPPR=3.0103;RPL=161.0;RPR=191.0;EPP=3.40511;EPPR=5.27618;DPRA=0.0;ODDS=85.2395;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.266;Dels=0.0;FS=3.181;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.058;QD=26.72;ReadPosRankSum=-0.514;SOR=0.849	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:133:0:0:135:5160:-464.357,-36.5931,0.0:133:100:133:0,131:5315,394,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:354:138:5295:217:8378:-657.374,0.0,-380.087:216:61:354:138,216:8326,0,4856:.:1:1:.:.:.:-0.0152891
chr13	41145330	.	A	T	5351.175	REJECT	NS=2;DP=275;DPB=314.0;AC=3;AN=4;AF=0.75;RO=88;AO=220;PRO=0.0;PAO=0.0;QR=2918;QA=7447;PQR=0.0;PQA=0.0;SRF=27;SRR=61;SAF=76;SAR=144;SRP=31.5356;SAP=48.6507;AB=0.616034;ABP=30.7264;RUN=1;RPP=3.04978;RPPR=4.58955;RPL=109.0;RPR=111.0;EPP=7.78754;EPPR=11.0053;DPRA=0.0;ODDS=46.8386;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.8045;MQMR=59.7727;PAIRED=0.981818;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.15;Dels=0.0;FS=0.0;HaplotypeScore=23.2817;MLEAC=1;MLEAF=0.75;MQ=59.9;MQRankSum=-1.681;QD=26.73;ReadPosRankSum=-0.173;SOR=0.8695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.1465:73:0:0:74:2401:-216.112,-19.9158,0.0:72:100:72:0,70:2431,205,0:1:.:1:.:.:.:-0.0017966	0/1:119.1465:236:88:2918:146:5046:-390.729,0.0,-199.325:145:62:233:88,145:4770,0,2456:.:1:1:.:.:.:-0.0152891
chr13	41146301	.	T	C	9883.185000000001	REJECT	NS=2;DP=431;DPB=500.0;AC=3;AN=4;AF=0.75;RO=141;AO=359;PRO=0.0;PAO=0.0;QR=5423;QA=13753;PQR=0.0;PQA=0.0;SRF=87;SRR=54;SAF=177;SAR=182;SRP=19.7815;SAP=3.16152;AB=0.61157;ABP=42.2583;RUN=1;RPP=8.09723;RPPR=7.46105;RPL=194.0;RPR=165.0;EPP=20.001;EPPR=11.1572;DPRA=0.0;ODDS=86.4256;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991643;PAIREDR=0.992908;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.011;Dels=0.0;FS=6.988;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.55;QD=26.555;ReadPosRankSum=-0.781;SOR=0.5705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.0985:136:0:0:137:5214:-469.184,-37.1082,0.0:136:100:136:0,135:5579,405,0:1:.:1:.:.:.:-0.0017966	0/1:118.0985:363:141:5423:222:8539:-669.698,0.0,-389.428:222:61:363:141,222:8488,0,4973:.:1:1:.:.:.:-0.0152891
chr13	41146547	.	T	TCTC	8427.46	REJECT	NS=2;DP=373;DPB=742.333;AC=3;AN=4;AF=0.75;RO=140;AO=291;PRO=9.0;PAO=12.0;QR=5222;QA=10629;PQR=246.5;PQA=349.5;SRF=73;SRR=67;SAF=159;SAR=132;SRP=3.56868;SAP=8.45017;AB=0.570033;ABP=16.0886;RUN=1;RPP=3.61473;RPPR=10.5174;RPL=150.0;RPR=141.0;EPP=20.9268;EPPR=3.25847;DPRA=0.0;ODDS=7.7448;GTI=0;TYPE=ins;CIGAR=1M3I2M;NUMALT=1;MEANALT=2.0;LEN=3;MQM=60.1031;MQMR=59.7071;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41146547;HOMLEN=2;HOMSEQ=CT;SVLEN=3;SVTYPE=INS;BaseQRankSum=1.537;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=60.135;MQRankSum=0.664;QD=32.645;ReadPosRankSum=0.519;SOR=0.746	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:66.31855:131:11:358:116:4266:-351.955,-2.39535,0.0:135:98:135:2,172:5993,406,0:1:.:1:1:.:.:-0.0017966	0/1:129.501:309:129:4864:175:6363:-498.512,0.0,-354.465:195:64:306:116,263:10751,0,5563:.:1:1:1:.:.:-0.0152891
chr13	41147158	.	T	C	9783.835	REJECT	NS=2;DP=386;DPB=445.0;AC=3;AN=4;AF=0.75;RO=98;AO=347;PRO=0.0;PAO=0.0;QR=3732;QA=13085;PQR=0.0;PQA=0.0;SRF=49;SRR=49;SAF=176;SAR=171;SRP=3.0103;SAP=3.16675;AB=0.70303;ABP=121.165;RUN=1;RPP=13.5297;RPPR=5.22609;RPL=153.0;RPR=194.0;EPP=3.06662;EPPR=3.36483;DPRA=0.0;ODDS=72.7012;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988473;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.003;Dels=0.0;FS=0.0;HaplotypeScore=5.7512;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.508;QD=28.275;ReadPosRankSum=-1.146;SOR=0.7145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:115:4317:-388.543,-31.1477,0.0:113:100:113:0,111:4519,334,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:329:98:3732:232:8768:-699.301,0.0,-246.346:231:70:329:97,231:8788,0,3129:.:1:1:.:.:.:-0.0152891
chr13	41147493	.	C	A	6117.765	REJECT	NS=2;DP=347;DPB=400.0;AC=2;AN=4;AF=0.5;RO=188;AO=212;PRO=0.0;PAO=0.0;QR=7145;QA=8129;PQR=0.0;PQA=0.0;SRF=91;SRR=97;SAF=134;SAR=78;SRP=3.42611;SAP=35.1317;AB=0.53;ABP=6.13722;RUN=1;RPP=3.66584;RPPR=4.16534;RPL=102.0;RPR=110.0;EPP=3.0103;EPPR=3.19511;DPRA=0.0;ODDS=316.584;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994681;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.576;Dels=0.0;FS=11.716;HaplotypeScore=5.815;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.614;QD=18.33;ReadPosRankSum=-0.335;SOR=1.388;ClippingRankSum=-0.062	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.588:105:57:2190:49:1870:-139.591,0.0,-168.384:48:46:105:56,48:1683,0,2035:1:.:1:.:.:.:-0.0017966	0/1:119.588:294:131:4955:163:6259:-483.371,0.0,-366.066:163:55:294:131,163:6128,0,4630:.:1:1:.:.:.:-0.0152891
chr13	41148353	.	T	C	9650.985	REJECT	NS=2;DP=408;DPB=475.0;AC=3;AN=4;AF=0.75;RO=120;AO=355;PRO=0.0;PAO=0.0;QR=4651;QA=13415;PQR=0.0;PQA=0.0;SRF=57;SRR=63;SAF=199;SAR=156;SRP=3.66174;SAP=14.3203;AB=0.650146;ABP=70.174;RUN=1;RPP=6.2461;RPPR=3.0103;RPL=189.0;RPR=166.0;EPP=3.01642;EPPR=4.81986;DPRA=0.0;ODDS=83.3474;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994366;PAIREDR=0.983333;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.746;Dels=0.0;FS=1.533;HaplotypeScore=6.7902;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.333;QD=26.17;ReadPosRankSum=0.551;SOR=0.9885	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:131:0:0:132:5012:-451.048,-35.7713,0.0:131:100:131:0,131:5406,394,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:342:120:4651:223:8403:-662.917,0.0,-325.458:222:65:342:120,222:8265,0,4184:.:1:1:.:.:.:-0.0152891
chr13	41149311	.	T	TA	364.323	REJECT	NS=2;DP=107;DPB=143.292;AC=2;AN=2;AF=0.0;RO=61;AO=11;PRO=24.6667;PAO=16.6667;QR=2252;QA=356;PQR=885.167;PQA=585.167;SRF=30;SRR=31;SAF=5;SAR=6;SRP=3.0459;SAP=3.20771;AB=0.102804;ABP=149.635;RUN=1;RPP=3.20771;RPPR=3.0459;RPL=6.0;RPR=5.0;EPP=12.6832;EPPR=32.9481;DPRA=0.0;ODDS=26.5181;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.108:26:8:301:3:113:-18.5566,-11.8979,-42.3621:3:15:20:.:.:1:.:.:.:-0.0017966	./1:133.899:81:53:1951:8:243:-23.7712,-17.3551,-197.711:8:11:73:.:.:1:.:.:.:-0.0152891
chr13	41149311	.	TA	T	231.5265	REJECT	NS=2;DP=106;DPB=143.292;AC=2;AN=4;AF=0.5;RO=61;AO=17;PRO=24.6667;PAO=18.1667;QR=2252;QA=643;PQR=885.167;PQA=636.167;SRF=30;SRR=31;SAF=7;SAR=10;SRP=3.0459;SAP=4.1599;AB=0.158879;ABP=111.158;RUN=1;RPP=13.3567;RPPR=3.0459;RPL=4.0;RPR=13.0;EPP=6.20364;EPPR=32.9481;DPRA=0.0;ODDS=26.5181;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.1035;FS=1.961;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.2575;QD=1.91;RPA=13,12;RU=A;ReadPosRankSum=0.0175;SOR=0.8985;STR;ClippingRankSum=0.049	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:107.054:25:8:301:7:257:-18.5566,0.0,-29.3784:8:36:22:15,9:136,0,246:1:.:1:.:.:.:-0.0017966	0/1:116.4495:93:53:1951:10:386:-23.7712,0.0,-184.827:13:15:82:76,16:105,0,1479:.:1:1:.:.:.:-0.0152891
chr13	41149311	.	TAA	T	364.323	REJECT	NS=2;DP=107;DPB=143.292;AC=2;AN=2;AF=0.0;RO=61;AO=4;PRO=24.6667;PAO=14.5;QR=2252;QA=145;PQR=885.167;PQA=507.5;SRF=30;SRR=31;SAF=2;SAR=2;SRP=3.0459;SAP=3.0103;AB=0.0373832;ABP=201.913;RUN=1;RPP=3.0103;RPPR=3.0459;RPL=2.0;RPR=2.0;EPP=11.6962;EPPR=32.9481;DPRA=0.0;ODDS=26.5181;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=3;MEANALT=10.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.108:26:8:301:2:77:-18.5566,-15.6876,-55.6188:2:10:20:.:.:1:.:.:.:-0.0017966	./1:133.899:81:53:1951:2:68:-23.7712,-35.8098,-232.798:2:3:73:.:.:1:.:.:.:-0.0152891
chr13	41149345	.	T	G	3008.385	REJECT	NS=2;DP=133;DPB=157.0;AC=3;AN=4;AF=0.75;RO=33;AO=122;PRO=0.0;PAO=0.0;QR=1136;QA=4277;PQR=0.0;PQA=0.0;SRF=26;SRR=7;SAF=89;SAR=33;SRP=26.7649;SAP=58.8278;AB=0.690909;ABP=37.8328;RUN=1;RPP=31.4886;RPPR=4.65535;RPL=41.0;RPR=81.0;EPP=71.4295;EPPR=10.9724;DPRA=0.0;ODDS=26.3034;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991803;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.515;Dels=0.0;FS=0.4675;HaplotypeScore=16.4826;MLEAC=1;MLEAF=0.75;MQ=59.915;MQRankSum=1.477;QD=28.995;ReadPosRankSum=-0.669;SOR=1.189	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:106.612:44:1:14:46:1554:-138.392,-11.0474,0.0:44:99:44:0,42:1644,125,0:1:.:1:.:.:.:-0.0017966	0/1:119.754:110:32:1122:76:2723:-215.889,0.0,-71.7854:76:70:108:32,76:2713,0,912:.:1:1:.:.:.:-0.0152891
chr13	41150505	.	A	C	9256.485	REJECT	NS=2;DP=417;DPB=469.0;AC=3;AN=4;AF=0.75;RO=141;AO=328;PRO=0.0;PAO=0.0;QR=5407;QA=12463;PQR=0.0;PQA=0.0;SRF=68;SRR=73;SAF=155;SAR=173;SRP=3.39531;SAP=5.15529;AB=0.617486;ABP=46.8907;RUN=1;RPP=8.96861;RPPR=9.80193;RPL=149.0;RPR=179.0;EPP=6.82362;EPPR=9.80193;DPRA=0.0;ODDS=57.3023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978659;PAIREDR=0.992908;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6585;Dels=0.0;FS=1.746;HaplotypeScore=8.7306;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.0465;QD=28.045;ReadPosRankSum=0.83;SOR=0.5305;ClippingRankSum=-1.697	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.4775:101:1:38:102:3908:-348.329,-24.4855,0.0:100:99:101:1,99:4010,258,0:1:.:1:.:.:.:-0.0017966	0/1:118.4775:365:140:5369:226:8555:-670.348,0.0,-383.817:225:62:365:140,225:8426,0,4903:.:1:1:.:.:.:-0.0152891
chr13	41151134	.	A	G	2778.15	PASS	SOMATIC;NS=2;DP=480;DPB=480.0;AC=1;AN=3;AF=0.25;RO=370;AO=110;PRO=0.0;PAO=0.0;QR=14345;QA=4192;PQR=0.0;PQA=0.0;SRF=188;SRR=182;SAF=68;SAR=42;SRP=3.22158;SAP=16.355;AB=0.321637;ABP=97.5138;RUN=1;RPP=3.0103;RPPR=4.16059;RPL=55.0;RPR=55.0;EPP=3.32615;EPPR=4.16059;DPRA=2.47826;ODDS=87.1199;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990909;PAIREDR=0.986486;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.99;Dels=0.0;FS=11.031;HaplotypeScore=4.8658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.053;QD=10.62;ReadPosRankSum=0.224;SOR=1.249	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.242:135:138:5385:0:0:0.0,-37.4097,-484.566:0:0:135:133,0:.:0.0:0:.:.:.:0:.:.:0:-0.0017966	0/1:119.121:342:232:8960:110:4192:-284.416,0.0,-713.253:110:32:342:222,106:38.0:0.324:2:3661,0,8990:.:1:1:.:.:1:-0.0152891
chr13	41151292	.	A	C	599.77	PASS	DP=82;AC=1;AN=4;AF=0.5;BaseQRankSum=-2.351;FS=176.619;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.634;QD=7.31;ReadPosRankSum=-2.154;SOR=6.182;ClippingRankSum=-0.241	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61,21:82:99.0:628,0,3214:21:26:82:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41151296	.	A	C	584.77	PASS	DP=81;AC=1;AN=4;AF=0.5;BaseQRankSum=-3.772;FS=145.221;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.25;QD=7.22;ReadPosRankSum=-3.206;SOR=6.089;ClippingRankSum=0.828	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:60,20:80:99.0:613,0,3456:20:25:80:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41151300	.	A	C	527.77	PASS	DP=86;AC=1;AN=4;AF=0.5;BaseQRankSum=-2.544;FS=123.996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.328;QD=6.14;ReadPosRankSum=-2.501;SOR=5.889;ClippingRankSum=-0.221	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:67,18:85:99.0:556,0,3625:18:21:85:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41151305	.	T	C	501.77	PASS	DP=90;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.715;FS=101.645;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.289;QD=5.58;ReadPosRankSum=-4.138;SOR=5.781;ClippingRankSum=-0.485	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:72,17:89:99.0:530,0,3754:17:19:89:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41151307	.	CTCCTCAATGTGAAAGGCATGATTA	C	381.73	PASS	DP=114;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.536;FS=84.02;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.534;QD=3.35;ReadPosRankSum=-5.112;SOR=5.667;ClippingRankSum=0.121	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:96,16:112:99.0:419,0,4708:16:14:112:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41151338	.	G	C	67.77	PASS	DP=82;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.878;FS=9.878;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.741;QD=0.83;SOR=2.22;ClippingRankSum=-0.046	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:78,2:80:96.0:96,0,3969:2:3:80:1:.:.:.:.:.:-0.0017966	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	41153225	.	C	T	11632.599999999999	REJECT	NS=2;DP=497;DPB=565.0;AC=3;AN=4;AF=0.75;RO=158;AO=407;PRO=0.0;PAO=0.0;QR=6013;QA=15654;PQR=0.0;PQA=0.0;SRF=75;SRR=83;SAF=197;SAR=210;SRP=3.88988;SAP=3.91197;AB=0.632558;ABP=68.6393;RUN=1;RPP=6.34487;RPPR=6.52863;RPL=191.0;RPR=216.0;EPP=4.21075;EPPR=3.06527;DPRA=0.0;ODDS=85.1587;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997543;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.438;Dels=0.0;FS=0.2715;HaplotypeScore=6.8226;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.79;QD=27.955;ReadPosRankSum=-0.738;SOR=0.784	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:132:0:0:135:5177:-465.83,-36.558,0.0:132:100:132:0,130:5276,390,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:429:158:6013:272:10477:-825.839,0.0,-424.327:271:63:429:158,271:10443,0,5407:.:1:1:.:.:.:-0.0152891
chr13	41155776	.	C	G	9255.985	REJECT	NS=2;DP=396;DPB=457.0;AC=3;AN=4;AF=0.75;RO=121;AO=336;PRO=0.0;PAO=0.0;QR=4619;QA=12758;PQR=0.0;PQA=0.0;SRF=62;SRR=59;SAF=175;SAR=161;SRP=3.17181;SAP=4.27699;AB=0.639881;ABP=60.1149;RUN=1;RPP=3.03615;RPPR=3.88966;RPL=167.0;RPR=169.0;EPP=11.386;EPPR=3.88966;DPRA=0.0;ODDS=76.4659;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988095;PAIREDR=0.991736;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.58;Dels=0.0;FS=0.0;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.974;QD=30.555;ReadPosRankSum=0.553;SOR=0.7675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:120:0:0:121:4604:-414.346,-32.7828,0.0:120:100:120:0,119:4652,357,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:335:121:4619:215:8154:-642.401,0.0,-324.485:214:64:335:121,214:8042,0,4186:.:1:1:.:.:.:-0.0152891
chr13	41156188	.	T	C	9194.35	REJECT	NS=2;DP=383;DPB=429.0;AC=3;AN=4;AF=0.75;RO=113;AO=316;PRO=0.0;PAO=0.0;QR=4321;QA=11971;PQR=0.0;PQA=0.0;SRF=62;SRR=51;SAF=152;SAR=164;SRP=5.3355;SAP=3.99983;AB=0.666667;ABP=84.8024;RUN=1;RPP=3.12025;RPPR=3.95191;RPL=156.0;RPR=160.0;EPP=6.96843;EPPR=3.02952;DPRA=0.0;ODDS=56.9978;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.571;Dels=0.0;FS=2.241;HaplotypeScore=10.7636;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.327;QD=28.345;ReadPosRankSum=0.493;SOR=0.6795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:90:3342:-300.797,-24.3279,0.0:89:100:89:0,88:3533,262,0:1:.:1:.:.:.:-0.0017966	0/1:129.501:338:113:4321:226:8629:-684.321,0.0,-296.845:225:67:338:113,225:8630,0,3813:.:1:1:.:.:.:-0.0152891
chr13	41156708	.	C	T	4050.1049999999996	REJECT	NS=2;DP=172;DPB=190.0;AC=3;AN=4;AF=0.75;RO=50;AO=140;PRO=0.0;PAO=0.0;QR=1921;QA=5302;PQR=0.0;PQA=0.0;SRF=22;SRR=28;SAF=51;SAR=89;SRP=4.57376;SAP=25.4075;AB=0.677419;ABP=45.389;RUN=1;RPP=30.3709;RPPR=3.70517;RPL=91.0;RPR=49.0;EPP=15.1705;EPPR=14.1282;DPRA=0.0;ODDS=22.857;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.971429;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.635;Dels=0.0;FS=2.18;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.994;QD=28.245;ReadPosRankSum=-0.025;SOR=1.05	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:99.13325:34:0:0:35:1337:-120.591,-9.50068,0.0:34:100:34:0,34:1443,102,0:1:.:1:.:.:.:-1.07614	0/1:123.7455:154:50:1921:105:3965:-314.768,0.0,-130.879:104:68:154:50,104:3891,0,1690:.:1:1:.:.:.:-0.0152891
chr13	41156938	.	G	A	4566.58	REJECT	NS=2;DP=194;DPB=223.0;AC=3;AN=4;AF=0.75;RO=56;AO=166;PRO=0.0;PAO=0.0;QR=2127;QA=6223;PQR=0.0;PQA=0.0;SRF=30;SRR=26;SAF=93;SAR=73;SRP=3.63072;SAP=8.24276;AB=0.660606;ABP=39.978;RUN=1;RPP=3.2196;RPPR=8.59409;RPL=81.0;RPR=85.0;EPP=14.7833;EPPR=5.49198;DPRA=0.0;ODDS=36.5499;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993976;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.614;Dels=0.0;FS=0.305;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.263;QD=27.28;ReadPosRankSum=-1.062;SOR=0.8585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.384:57:0:0:57:2115:-190.538,-15.4475,0.0:56:100:56:0,56:2201,168,0:1:.:1:.:.:.:-1.07614	0/1:118.859:165:56:2127:109:4108:-324.922,0.0,-146.704:109:66:165:56,109:4079,0,1907:.:1:1:.:.:.:-0.0152891
chr13	41157372	.	G	A	4726.445	REJECT	NS=2;DP=206;DPB=236.0;AC=3;AN=4;AF=0.75;RO=63;AO=173;PRO=0.0;PAO=0.0;QR=2382;QA=6452;PQR=0.0;PQA=0.0;SRF=34;SRR=29;SAF=67;SAR=106;SRP=3.872;SAP=22.1017;AB=0.642045;ABP=33.8551;RUN=1;RPP=6.63779;RPPR=3.32051;RPL=95.0;RPR=78.0;EPP=3.3241;EPPR=3.32051;DPRA=0.0;ODDS=38.3727;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99422;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.83;Dels=0.0;FS=4.709;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.824;QD=29.3;ReadPosRankSum=2.037;SOR=1.2305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.44:59:0:0:60:2206:-198.697,-16.2391,0.0:59:100:59:0,59:2385,177,0:1:.:1:.:.:.:-1.07614	0/1:129.501:176:63:2382:113:4246:-334.35,0.0,-166.668:113:64:176:63,113:4229,0,2144:.:1:1:.:.:.:-0.0152891
chr13	41158390	.	C	T	7807.76	REJECT	NS=2;DP=352;DPB=402.0;AC=3;AN=4;AF=0.75;RO=112;AO=289;PRO=0.0;PAO=0.0;QR=4251;QA=10626;PQR=0.0;PQA=0.0;SRF=42;SRR=70;SAF=124;SAR=165;SRP=18.2106;SAP=15.6409;AB=0.630719;ABP=48.4267;RUN=1;RPP=3.07792;RPPR=4.25114;RPL=146.0;RPR=143.0;EPP=9.32936;EPPR=3.0103;DPRA=0.0;ODDS=60.7532;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99308;PAIREDR=0.982143;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.66;Dels=0.0;FS=1.6705;HaplotypeScore=9.7115;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.876;QD=26.25;ReadPosRankSum=-0.121;SOR=0.6955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:96:3468:-312.159,-25.9588,0.0:95:100:95:0,94:3705,281,0:1:.:1:.:.:.:-1.07614	0/1:129.501:304:112:4251:193:7158:-561.279,0.0,-299.827:192:63:303:110,192:6987,0,3821:.:1:1:.:.:.:-0.0152891
chr13	41158593	.	TCCAC	CCCAA	8.80382	REJECT	NS=2;DP=79;DPB=85.0;AC=1;AN=4;AF=0.25;RO=70;AO=5;PRO=11.0;PAO=0.0;QR=2448;QA=46;PQR=340.0;PQA=0.0;SRF=10;SRR=60;SAF=0;SAR=5;SRP=80.5629;SAP=13.8677;AB=0.0909091;ABP=34.9902;RUN=1;RPP=6.91895;RPPR=93.4676;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=93.4676;DPRA=0.0;ODDS=1.88593;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=3.0;LEN=5;MQM=48.4;MQMR=59.0714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8.80382:22:19:671:2:28:-3.89823,0.0,-57.5572:2:10:21:.:.:1:.:.:.:-1.07614	0/0:160.002:57:51:1777:3:18:0.0,-15.4456,-186.701:3:6:54:.:.:0:.:.:.:-0.0152891
chr13	41158638	.	A	C	821.077	REJECT	SOMATIC;NS=2;DP=59;DPB=107.5;AC=1;AN=3;AF=0.0;RO=20;AO=2;PRO=8.08333;PAO=4.75;QR=659;QA=76;PQR=191.417;PQA=110.917;SRF=16;SRR=4;SAF=0;SAR=2;SRP=18.6449;SAP=7.35324;AB=0.0454545;ABP=81.9729;RUN=1;RPP=7.35324;RPPR=24.2907;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=24.2907;DPRA=0.0;ODDS=1.87918;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=3;MEANALT=7.0;LEN=1;MQM=50.0;MQMR=56.9;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.77536:15:0:0:0:0:-42.0793,-35.8279,-51.072:0:0:14:.:.:.:.:.:.:-1.07614	./1:160.002:44:20:659:2:76:-52.26,-41.5683,-114.391:2:5:39:.:.:1:.:.:.:-0.0152891
chr13	41158638	.	A	AGC	821.077	REJECT	NS=2;DP=59;DPB=107.5;AC=2;AN=3;AF=0.5;RO=20;AO=17;PRO=8.08333;PAO=9.08333;QR=659;QA=558;PQR=191.417;PQA=219.083;SRF=16;SRR=4;SAF=10;SAR=7;SRP=18.6449;SAP=4.1599;AB=0.386364;ABP=7.94546;RUN=1;RPP=18.4661;RPPR=24.2907;RPL=3.0;RPR=14.0;EPP=13.3567;EPPR=24.2907;DPRA=0.0;ODDS=1.87918;GTI=0;TYPE=ins;CIGAR=1M2I3M;NUMALT=3;MEANALT=7.0;LEN=2;MQM=63.0;MQMR=56.9;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=41158638;HOMLEN=2;HOMSEQ=GC;SVLEN=2;SVTYPE=INS;BaseQRankSum=3.478;FS=9.024;MLEAC=1;MLEAF=0.5;MQ=55.64;MQRankSum=0.047;QD=17.3;RPA=1,2;RU=GC;ReadPosRankSum=2.914;SOR=0.136;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.77536:15:0:0:0:0:-42.0793,-33.9432,-33.1271:0:0:14:.:.:.:.:1:.:.:.:-1.07614	0/1:129.501:47:20:659:17:558:-52.26,0.0,-46.3534:23:44:44:27,23:937,0,827:.:1:1:1:.:.:-0.0152891
chr13	41158638	.	A	AAAAAGC	821.077	REJECT	NS=2;DP=59;DPB=107.5;AC=2;AN=2;AF=0.25;RO=20;AO=14;PRO=8.08333;PAO=7.08333;QR=659;QA=390;PQR=191.417;PQA=170.583;SRF=16;SRR=4;SAF=10;SAR=4;SRP=18.6449;SAP=8.59409;AB=0.933333;ABP=27.4756;RUN=1;RPP=12.937;RPPR=24.2907;RPL=3.0;RPR=11.0;EPP=25.3454;EPPR=24.2907;DPRA=0.0;ODDS=1.87918;GTI=0;TYPE=ins;CIGAR=1M6I3M;NUMALT=3;MEANALT=2.0;LEN=6;MQM=66.2143;MQMR=56.9;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.77536:15:0:0:14:390:-42.0793,-0.816116,-3.91129:14:100:14:.:.:1:.:.:.:-1.07614	./1:160.002:44:20:659:0:0:-52.26,-47.5096,-115.781:0:0:39:.:.:1:.:.:.:-0.0152891
chr13	41159480	.	G	GCACA	2157.06	REJECT	SOMATIC;NS=2;DP=242;DPB=397.531;AC=1;AN=3;AF=0.0;RO=56;AO=15;PRO=49.0;PAO=49.6667;QR=2067;QA=559;PQR=1765.6;PQA=1790.27;SRF=25;SRR=31;SAF=9;SAR=6;SRP=4.40625;SAP=4.31318;AB=0.0619835;ABP=406.294;RUN=1;RPP=4.31318;RPPR=3.16541;RPL=6.0;RPR=9.0;EPP=3.15506;EPPR=3.63072;DPRA=0.0;ODDS=46.9907;GTI=0;TYPE=ins;CIGAR=1M4I31M;NUMALT=4;MEANALT=13.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:63:1:38:7:250:-134.296,-95.5864,-95.2121:7:13:52:.:.:.:.:.:.:0.0100567	./1:160.002:179:55:2029:8:309:-90.6087,-79.88,-245.356:8:5:146:.:.:1:.:.:.:-0.0152891
chr13	41159480	.	G	GCACACA	2341.395	REJECT	NS=2;DP=242;DPB=397.531;AC=2;AN=2;AF=0.375;RO=56;AO=59;PRO=49.0;PAO=49.6667;QR=2067;QA=1963;PQR=1765.6;PQA=1790.27;SRF=25;SRR=31;SAF=29;SAR=30;SRP=4.40625;SAP=3.0471;AB=0.243802;ABP=140.98;RUN=1;RPP=3.34154;RPPR=3.16541;RPL=28.0;RPR=31.0;EPP=3.93042;EPPR=3.63072;DPRA=0.0;ODDS=46.9907;GTI=0;TYPE=ins;CIGAR=1M6I31M;NUMALT=4;MEANALT=13.5;LEN=6;MQM=59.9831;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.952;FS=1.0995;MLEAC=1;MLEAF=0.5;MQ=60.125;MQRankSum=-0.03;QD=16.395;RPA=15,18;RU=CA;ReadPosRankSum=-1.064;SOR=0.6635;STR;ClippingRankSum=0.699	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:67:1:38:28:953:-134.296,-37.9906,-31.9539:35:57:62:6,43:2563,500,431:1:.:1:.:.:.:0.0100567	./1:129.501:232:55:2029:31:1010:-90.6087,-23.0314,-182.331:61:36:161:86,91:5144,0,5346:.:1:1:.:.:.:-0.0152891
chr13	41159480	.	G	GCACACACA	2157.06	REJECT	NS=2;DP=242;DPB=397.531;AC=2;AN=3;AF=0.5;RO=56;AO=57;PRO=49.0;PAO=49.6667;QR=2067;QA=1783;PQR=1765.6;PQA=1790.27;SRF=25;SRR=31;SAF=20;SAR=37;SRP=4.40625;SAP=14.02;AB=0.235537;ABP=150.024;RUN=1;RPP=7.61992;RPPR=3.16541;RPL=23.0;RPR=34.0;EPP=3.0484;EPPR=3.63072;DPRA=0.0;ODDS=46.9907;GTI=0;TYPE=ins;CIGAR=1M8I31M;NUMALT=4;MEANALT=13.5;LEN=8;MQM=59.9298;MQMR=60.0;PAIRED=0.982456;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.638;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=-0.03;QD=23.83;ReadPosRankSum=-1.307;SOR=0.804;ClippingRankSum=0.699	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:67:1:38:16:487:-134.296,-76.6832,-73.9087:19:31:62:6,23:2563,932,911:1:.:1:.:.:.:0.0100567	0/1:160.002:179:55:2029:41:1296:-90.6087,0.0,-156.626:41:28:146:.:.:.:.:1:.:.:.:-0.0152891
chr13	41159480	.	GCA	G	2157.06	REJECT	SOMATIC;NS=2;DP=242;DPB=397.531;AC=1;AN=3;AF=0.0;RO=56;AO=11;PRO=49.0;PAO=36.0;QR=2067;QA=366;PQR=1765.6;PQA=1287.6;SRF=25;SRR=31;SAF=4;SAR=7;SRP=4.40625;SAP=4.78696;AB=0.0614525;ABP=302.031;RUN=1;RPP=3.20771;RPPR=3.16541;RPL=6.0;RPR=5.0;EPP=3.20771;EPPR=3.63072;DPRA=0.0;ODDS=46.9907;GTI=0;TYPE=del;CIGAR=1M2D29M;NUMALT=4;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:63:1:38:0:0:-134.296,-144.326,-256.19:0:0:52:.:.:.:.:.:.:0.0100567	./1:160.002:179:55:2029:11:366:-90.6087,-122.154,-809.298:11:8:146:.:.:1:.:.:.:-0.0152891
chr13	41161403	.	T	A	221.056	REJECT	NS=2;DP=110;DPB=241.607;AC=2;AN=2;AF=0.0;RO=20;AO=8;PRO=87.45;PAO=27.0333;QR=752;QA=122;PQR=3101.73;PQA=922.233;SRF=3;SRR=17;SAF=0;SAR=8;SRP=24.2907;SAP=20.3821;AB=0.0727273;ABP=177.439;RUN=1;RPP=7.35324;RPPR=3.44459;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=4.74748;DPRA=0.0;ODDS=20.3108;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=4;MEANALT=22.5;LEN=1;MQM=57.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.2086:24:5:192:2:28:-9.89768,-27.6359,-306.051:2:14:14:.:.:1:.:.:.:0.0100567	./1:124.892:86:15:560:6:94:-19.0533,-91.6613,-1012.8:6:13:47:.:.:1:.:.:.:-0.0152891
chr13	41161403	.	T	TA	181.893	REJECT	NS=2;DP=110;DPB=241.607;AC=2;AN=4;AF=0.5;RO=20;AO=17;PRO=87.45;PAO=78.45;QR=752;QA=315;PQR=3101.73;PQA=2765.23;SRF=3;SRR=17;SAF=2;SAR=15;SRP=24.2907;SAP=24.5973;AB=0.154545;ABP=117.032;RUN=1;RPP=4.1599;RPPR=3.44459;RPL=7.0;RPR=10.0;EPP=3.13803;EPPR=4.74748;DPRA=0.0;ODDS=20.3108;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=4;MEANALT=22.5;LEN=1;MQM=59.6471;MQMR=60.0;PAIRED=0.941176;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.6405;FS=1.5595;MLEAC=1;MLEAF=0.5;MQ=59.37;MQRankSum=-0.2555;QD=0.82;RPA=19,20;RU=A;ReadPosRankSum=-0.134;SOR=0.914;STR;ClippingRankSum=1.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:86.1043:22:5:192:5:91:-9.89768,0.0,-28.4731:7:42:17:11,10:84,0,168:1:.:1:.:.:.:0.0100567	0/1:111.946:141:15:560:12:224:-19.0533,0.0,-59.6548:21:29:70:63,30:180,0,607:.:1:1:.:.:.:-0.0152891
chr13	41161403	.	TA	T	221.056	REJECT	NS=2;DP=110;DPB=241.607;AC=2;AN=2;AF=0.0;RO=20;AO=8;PRO=87.45;PAO=42.6167;QR=752;QA=196;PQR=3101.73;PQA=1460.4;SRF=3;SRR=17;SAF=3;SAR=5;SRP=24.2907;SAP=4.09604;AB=0.0727273;ABP=177.439;RUN=1;RPP=3.0103;RPPR=3.44459;RPL=4.0;RPR=4.0;EPP=12.7819;EPPR=4.74748;DPRA=0.0;ODDS=20.3108;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=4;MEANALT=22.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.2086:24:5:192:1:16:-9.89768,-21.1963,-159.583:1:7:14:.:.:1:.:.:.:0.0100567	./1:124.892:86:15:560:7:180:-19.0533,-36.009,-416.201:7:15:47:.:.:1:.:.:.:-0.0152891
chr13	41161403	.	TAA	T	221.056	REJECT	NS=2;DP=110;DPB=241.607;AC=2;AN=2;AF=0.0;RO=20;AO=8;PRO=87.45;PAO=39.45;QR=752;QA=157;PQR=3101.73;PQA=1345.4;SRF=3;SRR=17;SAF=0;SAR=8;SRP=24.2907;SAP=20.3821;AB=0.0727273;ABP=177.439;RUN=1;RPP=7.35324;RPPR=3.44459;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=4.74748;DPRA=0.0;ODDS=20.3108;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=4;MEANALT=22.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:88.2086:24:5:192:1:16:-9.89768,-21.1963,-159.583:1:7:14:.:.:1:.:.:.:0.0100567	./1:124.892:86:15:560:7:141:-19.0533,-48.6261,-498.837:7:15:47:.:.:1:.:.:.:-0.0152891
chr13	41161770	.	G	A	3828.23	PASS	SOMATIC;NS=2;DP=493;DPB=493.0;AC=1;AN=3;AF=0.25;RO=351;AO=142;PRO=0.0;PAO=0.0;QR=13469;QA=5478;PQR=0.0;PQA=0.0;SRF=175;SRR=176;SAF=62;SAR=80;SRP=3.01649;SAP=7.96493;AB=0.37467;ABP=54.7188;RUN=1;RPP=14.9993;RPPR=5.73856;RPL=85.0;RPR=57.0;EPP=3.98899;EPPR=5.73856;DPRA=3.32456;ODDS=72.0253;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.985755;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.309;Dels=0.0;FS=4.772;HaplotypeScore=2.9317;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.566;QD=13.04;ReadPosRankSum=-0.2;SOR=0.964	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:113:114:4323:0:0:0.0,-30.8542,-389.03:0:0:113:113,0:.:0.0:0:.:.:.:0:.:.:0:0.0100567	0/1:129.501:376:237:9146:142:5478:-390.012,0.0,-719.947:141:37:376:229,134:38.0:0.363:2:4930,0,9051:.:1:1:.:.:1:-0.0152891
chr13	41161979	.	C	G	3906.05	PASS	SOMATIC;NS=2;DP=544;DPB=544.0;AC=1;AN=3;AF=0.25;RO=396;AO=148;PRO=0.0;PAO=0.0;QR=15088;QA=5676;PQR=0.0;PQA=0.0;SRF=224;SRR=172;SAF=85;SAR=63;SRP=17.8377;SAP=10.1116;AB=0.352381;ABP=82.5069;RUN=1;RPP=3.0103;RPPR=3.79993;RPL=74.0;RPR=74.0;EPP=3.06899;EPPR=11.7839;DPRA=3.3871;ODDS=78.3771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997475;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.362;Dels=0.0;FS=0.0;HaplotypeScore=7.8642;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.284;QD=12.02;ReadPosRankSum=1.773;SOR=0.71	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.874:122:124:4735:0:0:0.0,-33.6128,-426.139:0:0:122:121,0:.:0.0:0:.:.:.:0:.:.:0:0.0100567	0/1:120.437:420:272:10353:148:5676:-396.746,0.0,-817.4:148:35:420:260,143:38.0:0.357:2:5077,0,10324:.:1:1:.:.:1:-0.0152891
chr13	41162225	.	C	T	10013.335	REJECT	NS=2;DP=415;DPB=472.0;AC=3;AN=4;AF=0.75;RO=125;AO=347;PRO=0.0;PAO=0.0;QR=4796;QA=13384;PQR=0.0;PQA=0.0;SRF=62;SRR=63;SAF=162;SAR=185;SRP=3.02767;SAP=6.3207;AB=0.651811;ABP=74.8745;RUN=1;RPP=3.51719;RPPR=5.11229;RPL=169.0;RPR=178.0;EPP=9.02409;EPPR=3.44459;DPRA=0.0;ODDS=71.4722;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.354;Dels=0.0;FS=0.416;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.755;QD=30.185;ReadPosRankSum=-0.028;SOR=0.9975	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:113:4330:-389.688,-30.614,0.0:113:100:113:0,113:4642,339,0:1:.:1:.:.:.:0.0100567	0/1:129.501:359:125:4796:234:9054:-717.066,0.0,-334.131:234:65:359:125,234:9057,0,4300:.:1:1:.:.:.:-0.0152891
chr13	41162632	.	T	A	9685.635	REJECT	NS=2;DP=416;DPB=470.0;AC=3;AN=4;AF=0.75;RO=127;AO=342;PRO=0.0;PAO=0.0;QR=4779;QA=12893;PQR=0.0;PQA=0.0;SRF=70;SRR=57;SAF=166;SAR=176;SRP=5.8999;SAP=3.64523;AB=0.651099;ABP=75.1939;RUN=1;RPP=21.525;RPPR=5.8999;RPL=198.0;RPR=144.0;EPP=3.23888;EPPR=3.16418;DPRA=0.0;ODDS=66.4869;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997076;PAIREDR=0.992126;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.702;Dels=0.0;FS=3.6925;HaplotypeScore=5.9321;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.817;QD=26.735;ReadPosRankSum=-0.44;SOR=0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:105:3954:-355.911,-28.4489,0.0:104:100:104:0,103:4197,309,0:1:.:1:.:.:.:0.0100567	0/1:129.501:363:127:4779:237:8939:-705.452,0.0,-331.304:237:65:363:126,237:8865,0,4230:.:1:1:.:.:.:-0.0152891
chr13	41163323	.	A	G	7128.16	REJECT	NS=2;DP=310;DPB=357.0;AC=3;AN=4;AF=0.75;RO=97;AO=258;PRO=0.0;PAO=0.0;QR=3689;QA=9860;PQR=0.0;PQA=0.0;SRF=70;SRR=27;SAF=177;SAR=81;SRP=44.4026;SAP=80.5773;AB=0.625;ABP=38.8396;RUN=1;RPP=6.37692;RPPR=4.10723;RPL=139.0;RPR=119.0;EPP=39.6728;EPPR=21.8372;DPRA=0.0;ODDS=58.982;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9884;MQMR=60.0;PAIRED=0.984496;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.814;Dels=0.0;FS=1.194;HaplotypeScore=6.8974;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.083;QD=23.84;ReadPosRankSum=0.132;SOR=1.1575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:93:3529:-317.66,-25.1896,0.0:92:100:92:0,92:3717,276,0:1:.:1:.:.:.:0.0100567	0/1:129.501:264:97:3689:165:6331:-498.525,0.0,-260.872:165:63:262:97,165:6300,0,3334:.:1:1:.:.:.:-0.0152891
chr13	41163373	.	A	G	7457.42	REJECT	NS=2;DP=325;DPB=374.0;AC=3;AN=4;AF=0.75;RO=107;AO=267;PRO=0.0;PAO=0.0;QR=4139;QA=10302;PQR=0.0;PQA=0.0;SRF=60;SRR=47;SAF=149;SAR=118;SRP=6.44001;SAP=10.826;AB=0.615108;ABP=35.0044;RUN=1;RPP=8.93915;RPPR=7.57648;RPL=120.0;RPR=147.0;EPP=3.0835;EPPR=3.19295;DPRA=0.0;ODDS=60.926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981273;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.016;Dels=0.0;FS=0.228;HaplotypeScore=3.9627;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.308;QD=28.8;ReadPosRankSum=0.556;SOR=0.7545	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.8275:96:0:0:96:3749:-337.474,-26.0338,0.0:96:100:96:0,96:4050,289,0:1:.:1:.:.:.:0.0100567	0/1:120.8275:277:107:4139:171:6553:-514.122,0.0,-297.003:171:62:277:106,171:6499,0,3779:.:1:1:.:.:.:-0.0152891
chr13	41169625	.	A	G	10007.935000000001	REJECT	NS=2;DP=417;DPB=480.0;AC=3;AN=4;AF=0.75;RO=120;AO=357;PRO=0.0;PAO=0.0;QR=4584;QA=13486;PQR=0.0;PQA=0.0;SRF=59;SRR=61;SAF=170;SAR=187;SRP=3.08268;SAP=4.76816;AB=0.658263;ABP=80.6785;RUN=1;RPP=4.76816;RPPR=4.16842;RPL=170.0;RPR=187.0;EPP=3.01638;EPPR=4.81986;DPRA=0.0;ODDS=77.0199;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988796;PAIREDR=0.975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.012;Dels=0.0;FS=0.203;HaplotypeScore=8.7479;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.4;QD=26.46;ReadPosRankSum=0.713;SOR=0.795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.111:121:0:0:122:4592:-413.236,-33.0233,0.0:121:100:121:0,120:4919,360,0:1:.:1:.:.:.:0.0100567	0/1:118.111:356:120:4584:235:8894:-703.828,0.0,-316.177:235:66:354:118,235:8937,0,3983:.:1:1:.:.:.:-0.0152891
chr13	41170075	.	A	AT	725.664	REJECT	NS=2;DP=194;DPB=305.222;AC=2;AN=2;AF=0.0;RO=59;AO=11;PRO=54.7;PAO=46.7;QR=2121;QA=269;PQR=1923.72;PQA=1639.72;SRF=21;SRR=38;SAF=5;SAR=6;SRP=13.6468;SAP=3.20771;AB=0.056701;ABP=334.149;RUN=1;RPP=3.20771;RPPR=22.4799;RPL=5.0;RPR=6.0;EPP=3.20771;EPPR=3.0471;DPRA=0.0;ODDS=19.9977;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=60.0;MQMR=59.4915;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.5366:45:11:402:2:53:-10.8698,-10.7059,-55.4254:2:6:35:.:.:1:.:.:.:0.0100567	./1:128.984:149:48:1719:9:216:-67.1496,-66.6785,-244.39:9:8:108:.:.:1:.:.:.:-0.0152891
chr13	41170075	.	AT	A	725.664	REJECT	NS=2;DP=194;DPB=305.222;AC=2;AN=4;AF=0.5;RO=59;AO=41;PRO=54.7;PAO=49.0333;QR=2121;QA=1106;PQR=1923.72;PQA=1706.88;SRF=21;SRR=38;SAF=17;SAR=24;SRP=13.6468;SAP=5.60547;AB=0.21134;ABP=143.417;RUN=1;RPP=4.33437;RPPR=22.4799;RPL=18.0;RPR=23.0;EPP=3.48696;EPPR=3.0471;DPRA=0.0;ODDS=19.9977;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=59.7805;MQMR=59.4915;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:86.5366:45:11:402:10:214:-10.8698,0.0,-60.5429:10:29:35:.:.:1:.:.:.:0.0100567	0/1:128.984:149:48:1719:31:892:-67.1496,0.0,-292.398:31:29:108:.:.:1:.:.:.:-0.0152891
chr13	41170075	.	ATT	A	725.664	REJECT	NS=2;DP=194;DPB=305.222;AC=2;AN=2;AF=0.0;RO=59;AO=11;PRO=54.7;PAO=40.2;QR=2121;QA=291;PQR=1923.72;PQA=1376.13;SRF=21;SRR=38;SAF=3;SAR=8;SRP=13.6468;SAP=7.94546;AB=0.056701;ABP=334.149;RUN=1;RPP=3.20771;RPPR=22.4799;RPL=6.0;RPR=5.0;EPP=3.20771;EPPR=3.0471;DPRA=0.0;ODDS=19.9977;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=5;MEANALT=19.0;LEN=2;MQM=58.4545;MQMR=59.4915;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.05;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-0.266;QD=1.12;RPA=20,18;RU=T;ReadPosRankSum=1.149;SOR=0.79;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.5366:45:11:402:4:117:-10.8698,-8.38813,-118.088:4:11:35:.:.:.:.:1:.:.:.:0.0100567	./1:113.992:206:48:1719:7:174:-67.1496,-87.2321,-468.502:20:15:123:105,33:335,0,2165:.:1:1:.:.:.:-0.0152891
chr13	41170075	.	ATTT	A	725.664	REJECT	NS=2;DP=194;DPB=305.222;AC=2;AN=2;AF=0.0;RO=59;AO=14;PRO=54.7;PAO=37.2;QR=2121;QA=451;PQR=1923.72;PQA=1286.93;SRF=21;SRR=38;SAF=9;SAR=5;SRP=13.6468;SAP=5.49198;AB=0.0721649;ABP=311.449;RUN=1;RPP=3.63072;RPPR=22.4799;RPL=6.0;RPR=8.0;EPP=3.0103;EPPR=3.0471;DPRA=0.0;ODDS=19.9977;GTI=0;TYPE=del;CIGAR=1M3D23M;NUMALT=5;MEANALT=19.0;LEN=3;MQM=60.0;MQMR=59.4915;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.5366:45:11:402:4:133:-10.8698,-11.098,-137.266:4:11:35:.:.:1:.:.:.:0.0100567	./1:128.984:149:48:1719:10:318:-67.1496,-85.507,-603.093:10:9:108:.:.:1:.:.:.:-0.0152891
chr13	41170097	.	C	G	725.664	REJECT	NS=2;DP=194;DPB=305.222;AC=2;AN=2;AF=0.0;RO=59;AO=7;PRO=54.7;PAO=35.1667;QR=2121;QA=74;PQR=1923.72;PQA=1185.62;SRF=21;SRR=38;SAF=7;SAR=0;SRP=13.6468;SAP=18.2106;AB=0.0360825;ABP=365.669;RUN=1;RPP=3.32051;RPPR=22.4799;RPL=4.0;RPR=3.0;EPP=3.32051;EPPR=3.0471;DPRA=0.0;ODDS=19.9977;GTI=0;TYPE=snp;CIGAR=22M1X4M;NUMALT=5;MEANALT=19.0;LEN=1;MQM=57.8571;MQMR=59.4915;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:86.5366:45:11:402:4:44:-10.8698,-27.1547,-247.809:4:11:35:.:.:1:.:.:.:0.0100567	./1:128.984:149:48:1719:3:30:-67.1496,-167.368,-1245.26:3:3:108:.:.:1:.:.:.:-0.0152891
chr13	41170134	.	T	A	7368.43	REJECT	NS=2;DP=353;DPB=401.0;AC=3;AN=4;AF=0.75;RO=109;AO=292;PRO=0.0;PAO=0.0;QR=3958;QA=10077;PQR=0.0;PQA=0.0;SRF=58;SRR=51;SAF=157;SAR=135;SRP=3.98647;SAP=6.60959;AB=0.643791;ABP=57.9642;RUN=1;RPP=41.5614;RPPR=19.7645;RPL=110.0;RPR=182.0;EPP=21.6017;EPPR=17.5333;DPRA=0.0;ODDS=60.0599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0514;MQMR=59.8165;PAIRED=0.986301;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.576;Dels=0.0;FS=0.0;HaplotypeScore=31.802;MLEAC=1;MLEAF=0.75;MQ=59.985;MQRankSum=-1.181;QD=29.45;ReadPosRankSum=0.114;SOR=0.8055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.116:88:0:0:95:3202:-288.221,-25.6577,0.0:88:100:88:0,82:3750,258,0:1:.:1:.:.:.:0.0100567	0/1:124.116:305:109:3958:197:6875:-535.659,0.0,-273.35:196:64:305:109,196:6646,0,3499:.:1:1:.:.:.:-0.0152891
chr13	41170140	.	C	T	7779.030000000001	REJECT	NS=2;DP=364;DPB=415.0;AC=3;AN=4;AF=0.75;RO=113;AO=296;PRO=0.0;PAO=0.0;QR=4099;QA=10660;PQR=0.0;PQA=0.0;SRF=62;SRR=51;SAF=160;SAR=136;SRP=5.3355;SAP=7.23587;AB=0.629747;ABP=49.2159;RUN=1;RPP=43.1825;RPPR=23.9371;RPL=111.0;RPR=185.0;EPP=18.5334;EPPR=26.5506;DPRA=0.0;ODDS=61.3258;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0169;MQMR=60.0;PAIRED=0.983108;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.975;Dels=0.0;FS=0.2145;HaplotypeScore=34.8353;MLEAC=1;MLEAF=0.75;MQ=59.985;MQRankSum=-1.551;QD=28.485;ReadPosRankSum=0.694;SOR=0.761	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.667:94:0:0:97:3462:-311.578,-26.2075,0.0:93:100:93:0,89:3869,267,0:1:.:1:.:.:.:0.0100567	0/1:117.667:315:113:4099:199:7198:-563.049,0.0,-284.382:198:64:311:112,198:6959,0,3606:.:1:1:.:.:.:-0.0152891
chr13	41170685	.	C	G	15038.349999999999	REJECT	NS=2;DP=398;DPB=451.0;AC=4;AN=4;AF=1.0;RO=0;AO=451;PRO=0.0;PAO=0.0;QR=0;QA=17218;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=231;SRP=0.0;SAP=3.59289;AB=0.0;ABP=0.0;RUN=1;RPP=12.7603;RPPR=0.0;RPL=248.0;RPR=203.0;EPP=20.9262;EPPR=0.0;DPRA=0.0;ODDS=69.2279;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995565;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.6959;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.275;SOR=0.906	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.7855:103:0:0:104:4009:-360.847,-28.1902,0.0:103:100:103:0,103:4372,310,0:1:.:1:.:.:.:0.0100567	1/1:123.7855:346:0:0:347:13209:-1187.94,-93.898,0.0:346:100:346:0,346:14688,1014,0:.:1:1:.:.:.:-0.0152891
chr13	41171330	.	CT	C	9917.965	REJECT	NS=2;DP=432;DPB=471.0;AC=3;AN=4;AF=0.75;RO=126;AO=348;PRO=33.0;PAO=38.0;QR=4784;QA=13006;PQR=1133.5;PQA=1300.5;SRF=55;SRR=71;SAF=168;SAR=180;SRP=7.42218;SAP=3.90884;AB=0.65;ABP=73.366;RUN=1;RPP=6.60446;RPPR=7.42218;RPL=186.0;RPR=162.0;EPP=3.0103;EPPR=8.59409;DPRA=0.0;ODDS=73.9106;GTI=0;TYPE=del;CIGAR=1M1D7M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0287;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41171331;HOMLEN=2;HOMSEQ=TT;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.872;FS=1.4205;MLEAC=1;MLEAF=0.75;MQ=60.09;MQRankSum=-0.851;QD=28.335;RPA=3,2;RU=T;ReadPosRankSum=0.822;SOR=0.6625;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.714:117:0:0:114:4262:-393.516,-31.673,0.0:120:100:120:58,160:4249,360,0:1:.:1:1:.:.:0.0100567	0/1:122.714:375:126:4784:234:8744:-719.639,0.0,-358.474:245:64:380:253,319:8806,0,4331:.:1:1:1:.:.:-0.0152891
chr13	41173267	.	G	GA	5558.11	REJECT	NS=2;DP=332;DPB=408.3;AC=2;AN=2;AF=0.0;RO=70;AO=15;PRO=52.4167;PAO=42.4167;QR=2593;QA=479;PQR=1807.08;PQA=1446.08;SRF=33;SRR=37;SAF=9;SAR=6;SRP=3.50664;SAP=4.31318;AB=0.0451807;ABP=599.537;RUN=1;RPP=6.62942;RPPR=9.09042;RPL=5.0;RPR=10.0;EPP=4.31318;EPPR=20.8784;DPRA=0.0;ODDS=48.0193;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.838:97:8:296:3:109:-230.775,-224.487,-253.548:3:3:93:.:.:1:.:.:.:0.0100567	./1:129.838:235:62:2297:12:370:-332.32,-321.246,-532.258:12:6:209:.:.:1:.:.:.:-0.0152891
chr13	41173267	.	GA	G	4414.92	REJECT	NS=2;DP=316;DPB=408.3;AC=2;AN=4;AF=0.5;RO=70;AO=199;PRO=52.4167;PAO=55.4167;QR=2593;QA=6647;PQR=1807.08;PQA=1848.58;SRF=33;SRR=37;SAF=88;SAR=111;SRP=3.50664;SAP=8.78271;AB=0.599398;ABP=31.5011;RUN=1;RPP=3.89417;RPPR=9.09042;RPL=95.0;RPR=104.0;EPP=8.78271;EPPR=20.8784;DPRA=0.0;ODDS=48.0193;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974874;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.1855;FS=0.863;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.3845;QD=13.025;RPA=12,11;RU=A;ReadPosRankSum=1.2525;SOR=0.674;STR;ClippingRankSum=-0.782	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:68.419:97:8:296:77:2619:-230.775,0.0,-24.938:80:85:95:13,84:1904,0,7:1:.:1:.:.:.:0.0100567	0/1:114.419:267:62:2297:122:4028:-332.32,0.0,-209.268:140:59:233:100,158:3309,0,1581:.:1:1:.:.:.:-0.0152891
chr13	41173267	.	GAA	G	5558.11	REJECT	NS=2;DP=332;DPB=408.3;AC=2;AN=2;AF=0.0;RO=70;AO=18;PRO=52.4167;PAO=34.75;QR=2593;QA=598;PQR=1807.08;PQA=1162.25;SRF=33;SRR=37;SAF=5;SAR=13;SRP=3.50664;SAP=10.7311;AB=0.0542169;ABP=576.07;RUN=1;RPP=3.0103;RPPR=9.09042;RPL=9.0;RPR=9.0;EPP=3.49285;EPPR=20.8784;DPRA=0.0;ODDS=48.0193;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.838:97:8:296:5:135:-230.775,-226.752,-300.821:5:5:93:.:.:1:.:.:.:0.0100567	./1:129.838:235:62:2297:13:463:-332.32,-322.364,-637.31:13:6:209:.:.:1:.:.:.:-0.0152891
chr13	41173354	.	G	GA	2795.415	REJECT	NS=2;DP=325;DPB=421.444;AC=2;AN=4;AF=0.5;RO=109;AO=145;PRO=34.65;PAO=36.65;QR=4023;QA=4639;PQR=1208.15;PQA=1296.15;SRF=52;SRR=57;SAF=62;SAR=83;SRP=3.50834;SAP=9.61457;AB=0.435435;ABP=15.0675;RUN=1;RPP=3.74411;RPPR=3.98647;RPL=69.0;RPR=76.0;EPP=3.38469;EPPR=3.1896;DPRA=0.0;ODDS=113.515;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=4;MEANALT=13.0;LEN=1;MQM=59.8621;MQMR=59.9817;PAIRED=0.993103;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.3585;FS=2.267;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.6295;QD=8.175;RPA=13,14;RU=A;ReadPosRankSum=-0.592;SOR=0.974;STR;ClippingRankSum=1.017	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:20:737:42:1247:-98.6973,0.0,-49.781:47:64:73:22,52:1027,0,278:1:.:1:.:.:.:0.0100567	0/1:129.501:284:89:3286:103:3392:-265.12,0.0,-252.088:115:47:241:126,127:2056,0,2002:.:1:1:.:.:.:-0.0152891
chr13	41173354	.	G	GAA	3572.1	REJECT	NS=2;DP=333;DPB=421.444;AC=2;AN=2;AF=0.0;RO=109;AO=20;PRO=34.65;PAO=31.65;QR=4023;QA=562;PQR=1208.15;PQA=1103.15;SRF=52;SRR=57;SAF=5;SAR=15;SRP=3.50834;SAP=13.8677;AB=0.0600601;ABP=562.826;RUN=1;RPP=6.91895;RPPR=3.98647;RPL=13.0;RPR=7.0;EPP=4.74748;EPPR=3.1896;DPRA=0.0;ODDS=113.515;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=4;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=59.9817;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:82:20:737:3:82:-98.6973,-97.549,-157.668:3:4:73:.:.:1:.:.:.:0.0100567	./1:160.002:251:89:3286:17:480:-265.12,-251.46,-527.088:17:7:230:.:.:1:.:.:.:-0.0152891
chr13	41173354	.	G	GAAA	3572.1	REJECT	NS=2;DP=333;DPB=421.444;AC=2;AN=2;AF=0.0;RO=109;AO=5;PRO=34.65;PAO=31.65;QR=4023;QA=122;PQR=1208.15;PQA=1103.15;SRF=52;SRR=57;SAF=1;SAR=4;SRP=3.50834;SAP=6.91895;AB=0.015015;ABP=683.333;RUN=1;RPP=3.44459;RPPR=3.98647;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=3.1896;DPRA=0.0;ODDS=113.515;GTI=0;TYPE=ins;CIGAR=1M3I17M;NUMALT=4;MEANALT=13.0;LEN=3;MQM=60.0;MQMR=59.9817;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:82:20:737:4:99:-98.6973,-96.289,-156.153:4:5:73:.:.:1:.:.:.:0.0100567	./1:160.002:251:89:3286:1:23:-265.12,-288.245,-568.137:1:0:230:.:.:1:.:.:.:-0.0152891
chr13	41173354	.	GA	G	3572.1	REJECT	NS=2;DP=333;DPB=421.444;AC=2;AN=2;AF=0.0;RO=109;AO=24;PRO=34.65;PAO=23.4;QR=4023;QA=783;PQR=1208.15;PQA=796.4;SRF=52;SRR=57;SAF=16;SAR=8;SRP=3.50834;SAP=8.80089;AB=0.0720721;ABP=532.674;RUN=1;RPP=3.0103;RPPR=3.98647;RPL=12.0;RPR=12.0;EPP=4.45795;EPPR=3.1896;DPRA=0.0;ODDS=113.515;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=4;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=59.9817;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:82:20:737:4:128:-98.6973,-105.606,-298.632:4:5:73:.:.:1:.:.:.:0.0100567	./1:160.002:251:89:3286:20:655:-265.12,-260.376,-807.833:20:9:230:.:.:1:.:.:.:-0.0152891
chr13	41173433	.	A	G	8856.875	REJECT	NS=2;DP=376;DPB=429.0;AC=3;AN=4;AF=0.75;RO=116;AO=313;PRO=0.0;PAO=0.0;QR=4436;QA=11957;PQR=0.0;PQA=0.0;SRF=62;SRR=54;SAF=144;SAR=169;SRP=4.20835;SAP=7.34631;AB=0.641975;ABP=59.7367;RUN=1;RPP=3.84975;RPPR=3.30981;RPL=151.0;RPR=162.0;EPP=3.84975;EPPR=7.80251;DPRA=0.0;ODDS=66.4367;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996805;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.789;Dels=0.0;FS=2.6195;HaplotypeScore=5.8654;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.77;QD=26.72;ReadPosRankSum=0.846;SOR=0.843	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:105:3959:-356.315,-28.4271,0.0:104:100:104:0,104:4274,312,0:1:.:1:.:.:.:0.0100567	0/1:129.501:323:116:4436:208:7998:-631.596,0.0,-311.262:207:64:323:116,207:7928,0,4026:.:1:1:.:.:.:-0.0152891
chr13	41174224	.	G	A	9425.485	REJECT	NS=2;DP=395;DPB=451.0;AC=3;AN=4;AF=0.75;RO=118;AO=333;PRO=0.0;PAO=0.0;QR=4500;QA=12704;PQR=0.0;PQA=0.0;SRF=59;SRR=59;SAF=153;SAR=180;SRP=3.0103;SAP=7.76406;AB=0.651917;ABP=70.9665;RUN=1;RPP=7.76406;RPPR=8.97265;RPL=180.0;RPR=153.0;EPP=10.9984;EPPR=3.30474;DPRA=0.0;ODDS=70.877;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993994;PAIREDR=0.991525;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.305;Dels=0.0;FS=0.94;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.197;QD=27.015;ReadPosRankSum=0.373;SOR=0.9125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:112:4251:-382.628,-30.3555,0.0:109:100:109:0,107:4741,322,0:1:.:1:.:.:.:0.0100567	0/1:129.501:339:118:4500:221:8453:-668.494,0.0,-312.951:221:65:339:118,221:8445,0,4001:.:1:1:.:.:.:-0.0152891
chr13	41174231	.	A	G	9198.935000000001	REJECT	NS=2;DP=394;DPB=449.0;AC=3;AN=4;AF=0.75;RO=123;AO=326;PRO=0.0;PAO=0.0;QR=4685;QA=12450;PQR=0.0;PQA=0.0;SRF=63;SRR=60;SAF=152;SAR=174;SRP=3.16919;SAP=6.2342;AB=0.637168;ABP=58.4117;RUN=1;RPP=9.83112;RPPR=6.98251;RPL=179.0;RPR=147.0;EPP=3.96948;EPPR=8.11238;DPRA=0.0;ODDS=69.6027;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996933;PAIREDR=0.99187;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.899;Dels=0.0;FS=0.6775;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.306;QD=23.995;ReadPosRankSum=0.267;SOR=0.857	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.795:107:0:0:110:4202:-378.189,-29.8021,0.0:107:100:107:0,104:4633,313,0:1:.:1:.:.:.:0.0100567	0/1:122.795:339:123:4685:216:8248:-650.062,0.0,-329.585:216:64:339:123,216:8214,0,4208:.:1:1:.:.:.:-0.0152891
chr13	41174437	.	C	T	8724.93	REJECT	NS=2;DP=369;DPB=425.0;AC=3;AN=4;AF=0.75;RO=117;AO=307;PRO=0.0;PAO=0.0;QR=4459;QA=11922;PQR=0.0;PQA=0.0;SRF=57;SRR=60;SAF=155;SAR=152;SRP=3.17734;SAP=3.07396;AB=0.624204;ABP=45.0843;RUN=1;RPP=7.43105;RPPR=3.02886;RPL=141.0;RPR=166.0;EPP=4.20567;EPPR=6.14687;DPRA=0.0;ODDS=70.2551;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983713;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.115;Dels=0.0;FS=0.2115;HaplotypeScore=2.9967;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.125;QD=29.69;ReadPosRankSum=2.259;SOR=0.7135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:111:4264:-383.779,-30.0855,0.0:110:100:110:0,110:4612,331,0:1:.:1:.:.:.:0.0100567	0/1:129.501:313:117:4459:196:7658:-603.997,0.0,-316.277:196:63:312:116,196:7665,0,3998:.:1:1:.:.:.:-0.0152891
chr13	41174534	.	C	T	8607.755000000001	REJECT	NS=2;DP=372;DPB=427.0;AC=3;AN=4;AF=0.75;RO=120;AO=307;PRO=0.0;PAO=0.0;QR=4491;QA=11770;PQR=0.0;PQA=0.0;SRF=51;SRR=69;SAF=137;SAR=170;SRP=8.87328;SAP=10.713;AB=0.621451;ABP=43.6244;RUN=1;RPP=5.05445;RPPR=3.0103;RPL=145.0;RPR=162.0;EPP=3.07396;EPPR=3.08268;DPRA=0.0;ODDS=69.5903;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.873;Dels=0.0;FS=0.691;HaplotypeScore=9.7787;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.621;QD=27.25;ReadPosRankSum=1.457;SOR=0.7935	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:110:4191:-377.187,-29.7967,0.0:110:100:110:0,110:4454,330,0:1:.:1:.:.:.:0.0100567	0/1:129.501:317:120:4491:197:7579:-595.867,0.0,-318.121:197:62:317:120,197:7582,0,4032:.:1:1:.:.:.:-0.0152891
chr13	41177259	.	G	T	9137.935000000001	REJECT	NS=2;DP=409;DPB=464.0;AC=3;AN=4;AF=0.75;RO=128;AO=333;PRO=0.0;PAO=0.0;QR=4862;QA=12294;PQR=0.0;PQA=0.0;SRF=47;SRR=81;SAF=135;SAR=198;SRP=22.6214;SAP=28.8919;AB=0.638655;ABP=62.6254;RUN=1;RPP=3.32983;RPPR=3.07816;RPL=163.0;RPR=170.0;EPP=4.47751;EPPR=3.28173;DPRA=0.0;ODDS=66.3712;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984985;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.884;Dels=0.0;FS=1.8375;HaplotypeScore=3.9238;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.539;QD=24.61;ReadPosRankSum=-0.355;SOR=0.9135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.7305:101:0:0:105:3818:-343.629,-28.3987,0.0:100:100:100:0,96:3808,287,0:1:.:1:.:.:.:0.0100567	0/1:121.7305:356:128:4862:228:8476:-666.005,0.0,-340.931:227:64:355:128,226:8295,0,4375:.:1:1:.:.:.:-0.0152891
chr13	41177488	.	TCCA	ACC	112.298	REJECT	NS=2;DP=98;DPB=183.594;AC=2;AN=2;AF=0.0;RO=20;AO=8;PRO=66.6167;PAO=18.6167;QR=711;QA=117;PQR=2232.93;PQA=598.183;SRF=7;SRR=13;SAF=0;SAR=8;SRP=6.91895;SAP=20.3821;AB=0.0816327;ABP=152.0;RUN=1;RPP=3.0103;RPPR=3.44459;RPL=4.0;RPR=4.0;EPP=3.0103;EPPR=30.8051;DPRA=0.0;ODDS=7.43985;GTI=0;TYPE=complex;CIGAR=1X2M1D28M;NUMALT=4;MEANALT=17.0;LEN=31;MQM=59.875;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.2128:24:4:139:4:65:-5.57549,-20.9354,-230.371:4:21:19:.:.:1:.:.:.:0.0100567	./1:91.1757:74:16:572:4:52:-11.1501,-94.8506,-1051.93:4:9:43:.:.:1:.:.:.:-0.0152891
chr13	41177490	.	CA	C	112.298	REJECT	NS=2;DP=98;DPB=183.594;AC=3;AN=4;AF=0.5;RO=20;AO=13;PRO=66.6167;PAO=47.1167;QR=711;QA=258;PQR=2232.93;PQA=1587.43;SRF=7;SRR=13;SAF=3;SAR=10;SRP=6.91895;SAP=11.1951;AB=0.132653;ABP=117.877;RUN=1;RPP=3.17734;RPPR=3.44459;RPL=6.0;RPR=7.0;EPP=7.18621;EPPR=30.8051;DPRA=0.0;ODDS=7.43985;GTI=0;TYPE=del;CIGAR=3M1D28M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=55.6154;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.067;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.762;QD=4.33;ReadPosRankSum=0.747;SOR=0.859;ClippingRankSum=-0.762	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:19.1064:20:4:139:4:79:-5.57549,0.0,-28.7836:9:54:17:2,14:173,6,0:1:.:1:.:.:.:0.0100567	0/1:91.1757:74:16:572:9:179:-11.1501,0.0,-82.4007:9:21:43:.:.:.:.:1:.:.:.:-0.0152891
chr13	41177490	.	CAA	C	112.298	REJECT	NS=2;DP=98;DPB=183.594;AC=2;AN=2;AF=0.0;RO=20;AO=13;PRO=66.6167;PAO=41.45;QR=711;QA=247;PQR=2232.93;PQA=1384.6;SRF=7;SRR=13;SAF=4;SAR=9;SRP=6.91895;SAP=7.18621;AB=0.132653;ABP=117.877;RUN=1;RPP=4.51363;RPPR=3.44459;RPL=8.0;RPR=5.0;EPP=4.51363;EPPR=30.8051;DPRA=0.0;ODDS=7.43985;GTI=0;TYPE=del;CIGAR=3M2D27M;NUMALT=4;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.2128:24:4:139:4:65:-5.57549,-1.90086,-53.6793:4:21:19:.:.:1:.:.:.:0.0100567	./1:91.1757:74:16:572:9:182:-11.1501,-10.7282,-148.006:9:21:43:.:.:1:.:.:.:-0.0152891
chr13	41177490	.	CAAA	C	112.298	REJECT	NS=2;DP=98;DPB=183.594;AC=2;AN=2;AF=0.0;RO=20;AO=8;PRO=66.6167;PAO=36.2;QR=711;QA=204;PQR=2232.93;PQA=1222.85;SRF=7;SRR=13;SAF=5;SAR=3;SRP=6.91895;SAP=4.09604;AB=0.0816327;ABP=152.0;RUN=1;RPP=7.35324;RPPR=3.44459;RPL=2.0;RPR=6.0;EPP=4.09604;EPPR=30.8051;DPRA=0.0;ODDS=7.43985;GTI=0;TYPE=del;CIGAR=3M3D26M;NUMALT=4;MEANALT=17.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:32.2128:24:4:139:3:66:-5.57549,-6.37796,-62.072:3:16:19:.:.:1:.:.:.:0.0100567	./1:91.1757:74:16:572:5:138:-11.1501,-21.1922,-236.784:5:12:43:.:.:1:.:.:.:-0.0152891
chr13	41178320	.	G	GA	751.951	REJECT	NS=2;DP=289;DPB=396.0;AC=2;AN=2;AF=0.0;RO=181;AO=25;PRO=102.167;PAO=71.1667;QR=6489;QA=840;PQR=3519.33;PQA=2423.33;SRF=88;SRR=93;SAF=12;SAR=13;SRP=3.31023;SAP=3.09716;AB=0.0865052;ABP=432.203;RUN=1;RPP=7.26639;RPPR=8.30101;RPL=9.0;RPR=16.0;EPP=5.18177;EPPR=5.70964;DPRA=0.0;ODDS=0.518537;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:4.28065:67:50:1776:3:104:-0.73125,-8.98448,-189.961:3:5:60:.:.:1:.:.:.:0.0100567	./1:160.002:222:131:4713:22:736:-79.4203,-53.6727,-497.195:22:11:194:.:.:1:.:.:.:-0.0152891
chr13	41178320	.	GA	G	751.951	REJECT	NS=2;DP=289;DPB=396.0;AC=2;AN=4;AF=0.5;RO=181;AO=48;PRO=102.167;PAO=65.6667;QR=6489;QA=1605;PQR=3519.33;PQA=2256.33;SRF=88;SRR=93;SAF=23;SAR=25;SRP=3.31023;SAP=3.19126;AB=0.16609;ABP=282.89;RUN=1;RPP=3.19126;RPPR=8.30101;RPL=23.0;RPR=25.0;EPP=3.0103;EPPR=5.70964;DPRA=0.0;ODDS=0.518537;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=2;MEANALT=15.0;LEN=1;MQM=60.2083;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.478;FS=5.517;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.853;QD=1.96;RPA=12,11;RU=A;ReadPosRankSum=-1.192;SOR=0.909;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:4.28065:67:50:1776:7:246:-0.73125,0.0,-209.601:7:12:60:.:.:.:.:1:.:.:.:0.0100567	0/1:129.501:264:131:4713:41:1359:-79.4203,0.0,-495.059:48:21:228:207,55:640,0,4144:.:1:1:.:.:.:-0.0152891
chr13	41178521	.	C	CT	1792.4	REJECT	NS=2;DP=253;DPB=365.667;AC=2;AN=4;AF=0.5;RO=92;AO=89;PRO=61.4167;PAO=63.4167;QR=3388;QA=2657;PQR=2149.75;PQA=2177.75;SRF=36;SRR=56;SAF=43;SAR=46;SRP=12.4515;SAP=3.22989;AB=0.351779;ABP=51.2891;RUN=1;RPP=11.8182;RPPR=14.4341;RPL=54.0;RPR=35.0;EPP=10.0615;EPPR=5.3706;DPRA=0.0;ODDS=96.272;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=16.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98913;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.217;FS=12.153;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.413;QD=7.045;RPA=13,14;RU=T;ReadPosRankSum=0.2105;SOR=0.4485;STR;ClippingRankSum=1.991	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.101:74:14:518:35:1018:-92.0415,0.0,-46.4683:44:65:67:23,53:935,0,277:1:.:1:.:.:.:0.0100567	0/1:115.101:225:78:2870:54:1639:-147.689,0.0,-246.279:73:39:181:113,92:1296,0,1881:.:1:1:.:.:.:-0.0152891
chr13	41178521	.	C	CTT	2326.07	REJECT	NS=2;DP=253;DPB=365.667;AC=2;AN=2;AF=0.0;RO=92;AO=16;PRO=61.4167;PAO=54.4167;QR=3388;QA=338;PQR=2149.75;PQA=1883.75;SRF=36;SRR=56;SAF=3;SAR=13;SRP=12.4515;SAP=16.582;AB=0.0632411;ABP=422.207;RUN=1;RPP=5.18177;RPPR=14.4341;RPL=6.0;RPR=10.0;EPP=3.55317;EPPR=5.3706;DPRA=0.0;ODDS=96.272;GTI=0;TYPE=ins;CIGAR=1M2I23M;NUMALT=3;MEANALT=16.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.9375;PAIREDR=0.98913;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.202:73:14:518:6:136:-92.0415,-80.0947,-135.394:6:10:58:.:.:1:.:.:.:0.0100567	./1:131.202:180:78:2870:10:202:-147.689,-132.841,-392.68:10:6:158:.:.:1:.:.:.:-0.0152891
chr13	41178521	.	CT	C	2326.07	REJECT	NS=2;DP=253;DPB=365.667;AC=2;AN=2;AF=0.0;RO=92;AO=19;PRO=61.4167;PAO=40.75;QR=3388;QA=635;PQR=2149.75;PQA=1382.75;SRF=36;SRR=56;SAF=8;SAR=11;SRP=12.4515;SAP=4.03889;AB=0.0750988;ABP=399.755;RUN=1;RPP=4.03889;RPPR=14.4341;RPL=11.0;RPR=8.0;EPP=3.12459;EPPR=5.3706;DPRA=0.0;ODDS=96.272;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=16.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98913;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.202:73:14:518:3:96:-92.0415,-97.4916,-246.093:3:5:58:.:.:1:.:.:.:0.0100567	./1:131.202:180:78:2870:16:539:-147.689,-135.604,-537.489:16:10:158:.:.:1:.:.:.:-0.0152891
chr13	41179580	.	C	G	9202.475	REJECT	NS=2;DP=399;DPB=450.0;AC=3;AN=4;AF=0.75;RO=126;AO=324;PRO=0.0;PAO=0.0;QR=4802;QA=12240;PQR=0.0;PQA=0.0;SRF=59;SRR=67;SAF=176;SAR=148;SRP=4.11327;SAP=8.26473;AB=0.641026;ABP=63.6445;RUN=1;RPP=8.26473;RPPR=6.38815;RPL=148.0;RPR=176.0;EPP=3.43923;EPPR=3.28604;DPRA=0.0;ODDS=62.7259;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993827;PAIREDR=0.984127;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.632;Dels=0.0;FS=2.543;HaplotypeScore=4.8486;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.492;QD=28.16;ReadPosRankSum=-1.3;SOR=0.8375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.645:97:0:0:99:3730:-335.751,-26.8156,0.0:97:100:97:0,96:3947,288,0:1:.:1:.:.:.:0.0100567	0/1:119.645:350:126:4802:225:8510:-670.395,0.0,-336.871:224:64:350:125,224:8442,0,4268:.:1:1:.:.:.:-0.0152891
chr13	41179798	.	A	G	10523.935000000001	REJECT	NS=2;DP=442;DPB=502.0;AC=3;AN=4;AF=0.75;RO=132;AO=370;PRO=0.0;PAO=0.0;QR=5060;QA=14019;PQR=0.0;PQA=0.0;SRF=60;SRR=72;SAF=201;SAR=169;SRP=5.37918;SAP=9.02;AB=0.658854;ABP=87.1775;RUN=1;RPP=5.35784;RPPR=4.65535;RPL=175.0;RPR=195.0;EPP=4.91181;EPPR=3.60252;DPRA=0.0;ODDS=68.8896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994595;PAIREDR=0.992424;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.694;Dels=0.0;FS=5.899;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.4385;QD=29.24;ReadPosRankSum=-0.1555;SOR=0.5705;ClippingRankSum=1.1	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.5365:116:1:27:117:4375:-391.298,-29.509,0.0:115:99:116:1,114:4495,313,0:1:.:1:.:.:.:0.0100567	0/1:122.5365:383:131:5033:253:9644:-763.374,0.0,-348.719:252:66:383:131,252:9600,0,4517:.:1:1:.:.:.:-0.0152891
chr13	41181774	.	T	A	10573.885	REJECT	NS=2;DP=447;DPB=514.0;AC=3;AN=4;AF=0.75;RO=134;AO=380;PRO=0.0;PAO=0.0;QR=5125;QA=14383;PQR=0.0;PQA=0.0;SRF=69;SRR=65;SAF=189;SAR=191;SRP=3.26958;SAP=3.03316;AB=0.648294;ABP=75.786;RUN=1;RPP=3.37602;RPPR=4.6308;RPL=186.0;RPR=194.0;EPP=6.87324;EPPR=4.04742;DPRA=0.0;ODDS=83.917;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997368;PAIREDR=0.992537;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.455;Dels=0.0;FS=0.1935;HaplotypeScore=7.7566;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.011;QD=27.945;ReadPosRankSum=-0.035;SOR=0.7235	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.9665:131:0:0:133:5004:-450.298,-36.0187,0.0:131:100:131:0,130:5221,390,0:1:.:1:.:.:.:0.0100567	0/1:122.9665:381:134:5125:247:9379:-740.362,0.0,-357.807:247:65:381:134,247:9334,0,4600:.:1:1:.:.:.:-0.0152891
chr13	41182170	.	CA	C	9934.965	REJECT	NS=2;DP=417;DPB=428.0;AC=3;AN=4;AF=0.75;RO=113;AO=355;PRO=17.5;PAO=17.5;QR=4253;QA=13175;PQR=534.0;PQA=530.0;SRF=61;SRR=52;SAF=180;SAR=175;SRP=4.56684;SAP=3.16322;AB=0.662857;ABP=83.6402;RUN=1;RPP=3.50576;RPPR=4.56684;RPL=173.0;RPR=182.0;EPP=3.75044;EPPR=3.49071;DPRA=0.0;ODDS=78.2401;GTI=0;TYPE=del;CIGAR=1M1D4M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.1972;MQMR=60.0;PAIRED=0.991549;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41182171;HOMLEN=1;HOMSEQ=A;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.938;FS=1.204;MLEAC=1;MLEAF=0.75;MQ=60.305;MQRankSum=-1.081;QD=26.305;RPA=2,1;RU=A;ReadPosRankSum=0.947;SOR=0.675;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.6135:124:0:0:123:4566:-414.111,-33.5533,0.0:125:100:125:60,159:4650,376,0:1:.:1:1:.:.:0.0100567	0/1:118.6135:355:113:4253:232:8609:-686.141,0.0,-298.036:237:67:354:232,310:8966,0,3885:.:1:1:1:.:.:-0.0152891
chr13	41183050	.	A	G	14522.349999999999	REJECT	NS=2;DP=385;DPB=447.0;AC=4;AN=4;AF=1.0;RO=0;AO=447;PRO=0.0;PAO=0.0;QR=0;QA=16987;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=226;SRP=0.0;SAP=3.13175;AB=0.0;ABP=0.0;RUN=1;RPP=15.6456;RPPR=0.0;RPL=198.0;RPR=249.0;EPP=5.58012;EPPR=0.0;DPRA=0.0;ODDS=81.6604;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993289;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8547;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.405;SOR=0.719	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9785:123:0:0:124:4676:-420.826,-33.5896,0.0:123:100:123:0,122:4935,366,0:1:.:1:.:.:.:0.0100567	1/1:124.9785:323:0:0:323:12311:-1107.37,-87.4894,0.0:323:100:323:0,323:13849,969,0:.:1:1:.:.:.:-0.0152891
chr13	41183716	.	G	A	10623.835	REJECT	NS=2;DP=444;DPB=508.0;AC=3;AN=4;AF=0.75;RO=135;AO=372;PRO=0.0;PAO=0.0;QR=5144;QA=14329;PQR=0.0;PQA=0.0;SRF=76;SRR=59;SAF=188;SAR=184;SRP=7.65886;SAP=3.1037;AB=0.642105;ABP=69.6631;RUN=1;RPP=3.03365;RPPR=3.15506;RPL=185.0;RPR=187.0;EPP=4.15441;EPPR=3.79846;DPRA=0.0;ODDS=80.8101;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997312;PAIREDR=0.992593;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.385;Dels=0.0;FS=2.73;HaplotypeScore=8.7788;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.379;QD=26.735;ReadPosRankSum=0.92;SOR=0.606	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:128:4935:-444.072,-34.6694,0.0:127:100:127:0,126:5009,378,0:1:.:1:.:.:.:0.0100567	0/1:129.501:380:135:5144:244:9394:-742.266,0.0,-359.995:244:64:379:135,244:9474,0,4577:.:1:1:.:.:.:-0.0152891
chr13	41184078	.	C	G	8495.945	REJECT	NS=2;DP=418;DPB=484.0;AC=3;AN=4;AF=0.75;RO=130;AO=346;PRO=0.0;PAO=0.0;QR=4564;QA=12007;PQR=0.0;PQA=0.0;SRF=70;SRR=60;SAF=166;SAR=180;SRP=4.68066;SAP=4.24038;AB=0.619318;ABP=46.5385;RUN=1;RPP=3.0354;RPPR=5.41562;RPL=174.0;RPR=172.0;EPP=3.63789;EPPR=4.07933;DPRA=0.0;ODDS=80.3823;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.9884;MQMR=60.0;PAIRED=0.99711;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.128;Dels=0.0;FS=1.7795;HaplotypeScore=31.8806;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.319;QD=26.41;ReadPosRankSum=1.016;SOR=0.718	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:129:0:0:128:4334:-389.878,-34.4836,0.0:127:100:127:0,126:4561,371,0:1:.:1:.:.:.:0.0100567	0/1:129.501:352:130:4564:218:7673:-596.101,0.0,-316.536:218:63:348:130,218:7222,0,3901:.:1:1:.:.:.:-0.0152891
chr13	41186644	.	T	G	8906.69	REJECT	NS=2;DP=399;DPB=446.0;AC=3;AN=4;AF=0.75;RO=132;AO=314;PRO=0.0;PAO=0.0;QR=5020;QA=11863;PQR=0.0;PQA=0.0;SRF=74;SRR=58;SAF=168;SAR=146;SRP=7.22164;SAP=6.35741;AB=0.625;ABP=50.7827;RUN=1;RPP=3.03796;RPPR=5.37918;RPL=156.0;RPR=158.0;EPP=7.68519;EPPR=3.0103;DPRA=0.0;ODDS=59.6114;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993631;PAIREDR=0.992424;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.008;Dels=0.0;FS=0.203;HaplotypeScore=5.8878;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.323;QD=26.82;ReadPosRankSum=0.042;SOR=0.6755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.868:92:0:0:94:3574:-321.724,-25.4629,0.0:92:100:92:0,91:3853,274,0:1:.:1:.:.:.:0.0100567	0/1:118.868:352:132:5020:220:8289:-650.257,0.0,-356.246:220:63:352:132,220:8189,0,4559:.:1:1:.:.:.:-0.0152891
chr13	41187379	.	T	G	3990.54	PASS	SOMATIC;NS=2;DP=483;DPB=483.0;AC=1;AN=3;AF=0.25;RO=335;AO=147;PRO=0.0;PAO=0.0;QR=12963;QA=5587;PQR=0.0;PQA=0.0;SRF=163;SRR=172;SAF=80;SAR=67;SRP=3.53534;SAP=5.50675;AB=0.410615;ABP=27.8549;RUN=1;RPP=4.7977;RPPR=4.46875;RPL=79.0;RPR=68.0;EPP=12.2428;EPPR=16.1364;DPRA=2.864;ODDS=79.0113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986395;PAIREDR=0.99403;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.579;Dels=0.0;FS=3.46;HaplotypeScore=6.8631;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.139;QD=14.4;ReadPosRankSum=1.22;SOR=0.861	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:121:125:4854:0:0:0.0,-33.8882,-436.834:0:0:121:118,0:.:0.0:0:.:.:.:0:.:.:0:0.0100567	0/1:129.501:356:210:8109:147:5587:-405.824,0.0,-632.651:146:41:355:201,137:38.0:0.401:2:5153,0,7985:.:1:1:.:.:1:-0.0152891
chr13	41187557	.	T	TA	4468.44	REJECT	NS=2;DP=373;DPB=477.111;AC=2;AN=4;AF=0.5;RO=122;AO=208;PRO=44.3333;PAO=35.8333;QR=4575;QA=7349;PQR=1561.67;PQA=1236.17;SRF=54;SRR=68;SAF=112;SAR=96;SRP=6.49889;SAP=5.68288;AB=0.527919;ABP=5.67779;RUN=1;RPP=5.68288;RPPR=6.49889;RPL=96.0;RPR=112.0;EPP=5.68288;EPPR=6.49889;DPRA=0.0;ODDS=49.0773;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0962;MQMR=60.0;PAIRED=0.995192;PAIREDR=0.991803;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.03;FS=4.5595;MLEAC=1;MLEAF=0.5;MQ=60.335;MQRankSum=0.4665;QD=12.145;RPA=12,13;RU=A;ReadPosRankSum=-0.155;SOR=0.7565;STR;ClippingRankSum=-3.007	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:114.8125:99:13:494:71:2452:-230.722,0.0,-22.0405:76:79:96:18,82:1786,0,112:1:.:1:.:.:.:0.0100567	0/1:114.8125:323:109:4081:137:4897:-374.665,0.0,-338.758:152:51:292:140,167:2989,0,2503:.:1:1:.:.:.:-0.0152891
chr13	41187557	.	T	TAA	5985.15	REJECT	NS=2;DP=394;DPB=477.111;AC=2;AN=2;AF=0.0;RO=122;AO=20;PRO=44.3333;PAO=33.8333;QR=4575;QA=716;PQR=1561.67;PQA=1183.17;SRF=54;SRR=68;SAF=11;SAR=9;SRP=6.49889;SAP=3.44459;AB=0.0507614;ABP=693.671;RUN=1;RPP=6.91895;RPPR=6.49889;RPL=13.0;RPR=7.0;EPP=9.95901;EPPR=6.49889;DPRA=0.0;ODDS=49.0773;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=3;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991803;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.625:99:13:494:5:161:-230.722,-191.48,-231.594:5:5:93:.:.:1:.:.:.:0.0100567	./1:130.625:295:109:4081:15:555:-374.665,-358.62,-730.561:15:5:278:.:.:1:.:.:.:-0.0152891
chr13	41187557	.	TA	T	5985.15	REJECT	NS=2;DP=394;DPB=477.111;AC=2;AN=2;AF=0.0;RO=122;AO=21;PRO=44.3333;PAO=27.0;QR=4575;QA=789;PQR=1561.67;PQA=932.0;SRF=54;SRR=68;SAF=14;SAR=7;SRP=6.49889;SAP=8.07707;AB=0.0532995;ABP=685.889;RUN=1;RPP=3.94093;RPPR=6.49889;RPL=12.0;RPR=9.0;EPP=5.59539;EPPR=6.49889;DPRA=0.0;ODDS=49.0773;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=3;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.952381;PAIREDR=0.991803;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.625:99:13:494:4:135:-230.722,-222.654,-293.831:4:4:93:.:.:1:.:.:.:0.0100567	./1:130.625:295:109:4081:17:654:-374.665,-361.626,-824.485:17:6:278:.:.:1:.:.:.:-0.0152891
chr13	41188252	.	A	G	8806.185000000001	REJECT	NS=2;DP=374;DPB=433.0;AC=3;AN=4;AF=0.75;RO=117;AO=316;PRO=0.0;PAO=0.0;QR=4540;QA=12162;PQR=0.0;PQA=0.0;SRF=51;SRR=66;SAF=155;SAR=161;SRP=7.18621;SAP=3.25768;AB=0.629747;ABP=49.2159;RUN=1;RPP=5.23675;RPPR=3.47429;RPL=149.0;RPR=167.0;EPP=3.12025;EPPR=7.18621;DPRA=0.0;ODDS=73.9752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.894;Dels=0.0;FS=2.639;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.115;QD=28.06;ReadPosRankSum=0.289;SOR=0.6585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:117:4508:-405.694,-31.701,0.0:116:100:116:0,116:4778,349,0:1:.:1:.:.:.:0.0100567	0/1:129.501:316:117:4540:199:7654:-602.841,0.0,-322.75:199:63:316:117,199:7617,0,4153:.:1:1:.:.:.:-0.0152891
chr13	41188292	.	A	G	8901.005000000001	REJECT	NS=2;DP=376;DPB=431.0;AC=3;AN=4;AF=0.75;RO=117;AO=314;PRO=0.0;PAO=0.0;QR=4554;QA=12053;PQR=0.0;PQA=0.0;SRF=52;SRR=65;SAF=157;SAR=157;SRP=6.14687;SAP=3.0103;AB=0.639752;ABP=57.6343;RUN=1;RPP=3.12095;RPPR=5.25601;RPL=159.0;RPR=155.0;EPP=3.25926;EPPR=3.47429;DPRA=0.0;ODDS=61.3003;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996815;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.118;Dels=0.0;FS=1.909;HaplotypeScore=6.9632;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.076;QD=26.015;ReadPosRankSum=-0.998;SOR=0.611	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.031:108:1:37:108:4101:-365.769,-26.1904,0.0:107:99:108:0,107:4254,321,0:1:.:1:.:.:.:0.0100567	0/1:121.031:321:116:4517:206:7952:-628.0,0.0,-319.047:206:64:321:115,206:7952,0,4066:.:1:1:.:.:.:-0.0152891
chr13	41189143	.	C	A	10353.135	REJECT	NS=2;DP=434;DPB=495.0;AC=3;AN=4;AF=0.75;RO=132;AO=362;PRO=0.0;PAO=0.0;QR=5002;QA=13911;PQR=0.0;PQA=0.0;SRF=63;SRR=69;SAF=165;SAR=197;SRP=3.60252;SAP=9.15281;AB=0.644385;ABP=70.7324;RUN=1;RPP=3.39421;RPPR=4.65535;RPL=177.0;RPR=185.0;EPP=5.91359;EPPR=3.0103;DPRA=0.0;ODDS=76.4605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997238;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.311;Dels=0.0;FS=0.0;HaplotypeScore=6.8234;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.684;QD=28.82;ReadPosRankSum=0.306;SOR=0.9005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:120:0:0:121:4620:-415.769,-32.7804,0.0:120:100:120:0,120:4892,360,0:1:.:1:.:.:.:0.0100567	0/1:129.501:374:132:5002:241:9291:-734.628,0.0,-348.875:241:65:373:132,241:9300,0,4449:.:1:1:.:.:.:-0.0152891
chr13	41189665	.	A	AATACATAC	1509.33	REJECT	SOMATIC;NS=2;DP=98;DPB=195.3;AC=1;AN=3;AF=0.25;RO=9;AO=10;PRO=49.8833;PAO=49.8833;QR=345;QA=362;PQR=1803.83;PQA=1803.83;SRF=7;SRR=2;SAF=9;SAR=1;SRP=9.04217;SAP=16.9077;AB=0.15625;ABP=68.6973;RUN=1;RPP=6.48466;RPPR=22.5536;RPL=3.0;RPR=7.0;EPP=10.8276;EPPR=9.04217;DPRA=0.0;ODDS=4.5056;GTI=0;TYPE=ins;CIGAR=1M8I49M;NUMALT=4;MEANALT=7.0;LEN=8;MQM=58.8;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=41189665;HOMLEN=49;HOMSEQ=ATACATACATACATACATACATACATACATACATACATACATACATACA;SVLEN=8;SVTYPE=INS;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.13;QD=11.33;RPA=12;RU=ATAC;SOR=3.417;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:132.761:34:0:0:0:0:-87.4894,-87.4894,-87.4894:0:0:33:.:.:.:.:.:.:.:.:0.0100567	./1:59.30765:92:9:345:10:362:-78.0163,-50.6152,-76.5151:13:30:59:27,30:3662,2659,2147483647:.:1:1:1:.:.:-0.0152891
chr13	41189665	.	AATAC	A	1509.33	REJECT	NS=2;DP=98;DPB=195.3;AC=2;AN=3;AF=0.25;RO=9;AO=22;PRO=49.8833;PAO=50.3833;QR=345;QA=828;PQR=1803.83;PQA=1817.33;SRF=7;SRR=2;SAF=19;SAR=3;SRP=9.04217;SAP=28.2783;AB=0.22449;ABP=67.6227;RUN=1;RPP=6.56362;RPPR=22.5536;RPL=8.0;RPR=14.0;EPP=3.0103;EPPR=9.04217;DPRA=0.0;ODDS=4.5056;GTI=0;TYPE=del;CIGAR=1M4D45M;NUMALT=4;MEANALT=5.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=41189669;HOMLEN=45;HOMSEQ=ATACATACATACATACATACATACATACATACATACATACATACA;SVLEN=-4;SVTYPE=DEL;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.72;QD=26.23;SOR=2.726	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7,26:18:44:41:115.8805:37:0:0:12:451:-87.4894,-44.3718,-40.5753:1611,916,861:1:.:1:1:.:.:0.0100567	0/1:54,34:22:28:73:19.6153:64:9:345:10:377:-78.0163,-49.0783,-104.919:.:.:.:.:1:.:.:-0.0152891
chr13	41189665	.	AATACATAC	A	1541.53	REJECT	NS=2;DP=98;DPB=195.3;AC=2;AN=2;AF=0.5;RO=9;AO=47;PRO=49.8833;PAO=44.05;QR=345;QA=1635;PQR=1803.83;PQA=1586.0;SRF=7;SRR=2;SAF=40;SAR=7;SRP=9.04217;SAP=53.3238;AB=0.479592;ABP=3.36483;RUN=1;RPP=19.6891;RPPR=22.5536;RPL=14.0;RPR=33.0;EPP=4.16534;EPPR=9.04217;DPRA=0.0;ODDS=4.5056;GTI=0;TYPE=del;CIGAR=1M8D41M;NUMALT=4;MEANALT=5.5;LEN=8;MQM=61.7021;MQMR=60.0;PAIRED=0.978723;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=41189673;HOMLEN=41;HOMSEQ=ATACATACATACATACATACATACATACATACATACATACA;SVLEN=-8;SVTYPE=DEL;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.425;QD=18.78;RPA=12;RU=ATAC;SOR=3.0715;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.8805:37:0:0:18:583:-87.4894,-43.1176,-75.2755:23:56:41:9,35:1611,704,836:1:.:1:1:.:.:0.0100567	./1:59.30765:92:9:345:29:1052:-78.0163,-1.24006,-109.414:30:63:59:27,60:3662,1119,3230:.:1:1:1:.:.:-0.0152891
chr13	41189665	.	AATACATACATAC	A	1509.33	REJECT	NS=2;DP=98;DPB=195.3;AC=0;AN=4;AF=0.0;RO=9;AO=4;PRO=49.8833;PAO=38.8;QR=345;QA=146;PQR=1803.83;PQA=1382.0;SRF=7;SRR=2;SAF=3;SAR=1;SRP=9.04217;SAP=5.18177;AB=0.0408163;ABP=182.489;RUN=1;RPP=5.18177;RPPR=22.5536;RPL=3.0;RPR=1.0;EPP=11.6962;EPPR=9.04217;DPRA=0.0;ODDS=4.5056;GTI=0;TYPE=del;CIGAR=1M12D37M;NUMALT=4;MEANALT=5.5;LEN=12;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:132.761:34:0:0:3:109:-87.4894,-86.0801,-174.107:3:9:33:.:.:.:.:.:.:0.0100567	0/0:19.6153:64:9:345:1:37:-78.0163,-103.412,-438.227:1:2:59:.:.:.:.:.:.:-0.0152891
chr13	41189773	.	A	T	7433.8550000000005	REJECT	NS=2;DP=321;DPB=376.0;AC=3;AN=4;AF=0.75;RO=100;AO=275;PRO=0.0;PAO=0.0;QR=3778;QA=10464;PQR=0.0;PQA=0.0;SRF=67;SRR=33;SAF=152;SAR=123;SRP=28.1125;SAP=9.65106;AB=0.625926;ABP=40.1988;RUN=1;RPP=3.6499;RPPR=3.35774;RPL=142.0;RPR=133.0;EPP=3.96575;EPPR=3.79203;DPRA=0.0;ODDS=67.1163;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989091;PAIREDR=0.97;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.122;Dels=0.0;FS=8.5525;HaplotypeScore=5.8656;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.801;QD=24.67;ReadPosRankSum=-0.435;SOR=0.638	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.126:104:0:0:106:4072:-366.502,-28.7223,0.0:104:100:104:0,103:4252,310,0:1:.:1:.:.:.:0.0100567	0/1:122.126:268:100:3778:169:6392:-502.144,0.0,-267.002:168:63:267:97,168:6276,0,3299:.:1:1:.:.:.:-0.0152891
chr13	41191363	.	A	G	4134.96	REJECT	NS=2;DP=185;DPB=216.0;AC=3;AN=4;AF=0.75;RO=57;AO=158;PRO=0.0;PAO=0.0;QR=2190;QA=5949;PQR=0.0;PQA=0.0;SRF=13;SRR=44;SAF=25;SAR=133;SRP=39.6206;SAP=163.314;AB=0.625806;ABP=24.3187;RUN=1;RPP=12.3009;RPPR=16.763;RPL=66.0;RPR=92.0;EPP=8.5077;EPPR=14.02;DPRA=0.0;ODDS=39.0404;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=57.481;MQMR=58.0702;PAIRED=0.993671;PAIREDR=0.982456;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.318;Dels=0.0;FS=0.8655;HaplotypeScore=5.9186;MLEAC=1;MLEAF=0.75;MQ=57.81;MQRankSum=0.651;QD=28.495;ReadPosRankSum=0.846;SOR=2.42	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.8705:60:0:0:61:2274:-203.925,-16.529,0.0:60:100:60:0,60:2766,192,0:1:.:1:.:.:.:0.0100567	0/1:129.501:155:57:2190:97:3675:-287.894,0.0,-155.018:97:63:154:57,97:3624,0,1990:.:1:1:.:.:.:-0.0152891
chr13	41191381	.	G	A	4065.63	REJECT	NS=2;DP=172;DPB=200.0;AC=3;AN=4;AF=0.75;RO=50;AO=150;PRO=0.0;PAO=0.0;QR=1808;QA=5678;PQR=0.0;PQA=0.0;SRF=11;SRR=39;SAF=30;SAR=120;SRP=37.059;SAP=120.27;AB=0.662069;ABP=36.0916;RUN=1;RPP=3.53145;RPPR=32.3686;RPL=78.0;RPR=72.0;EPP=3.53145;EPPR=28.0257;DPRA=0.0;ODDS=33.4678;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.34;MQMR=57.8;PAIRED=0.993333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.591;Dels=0.0;FS=0.0;HaplotypeScore=5.857;MLEAC=1;MLEAF=0.75;MQ=57.585;MQRankSum=2.084;QD=27.385;ReadPosRankSum=1.394;SOR=2.028	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.607:54:1:15:54:2044:-181.823,-13.5637,0.0:53:99:54:0,53:2421,163,0:1:.:1:.:.:.:0.0100567	0/1:129.501:145:49:1793:96:3634:-286.38,0.0,-121.739:96:66:145:49,96:3652,0,1544:.:1:1:.:.:.:-0.0152891
chr13	41191473	.	C	T	3021.8	REJECT	NS=2;DP=159;DPB=179.0;AC=3;AN=4;AF=0.75;RO=46;AO=132;PRO=0.0;PAO=0.0;QR=1569;QA=4303;PQR=0.0;PQA=0.0;SRF=33;SRR=13;SAF=90;SAR=42;SRP=21.8927;SAP=40.9124;AB=0.661871;ABP=34.6451;RUN=1;RPP=3.27351;RPPR=6.03148;RPL=68.0;RPR=64.0;EPP=12.4858;EPPR=4.70971;DPRA=0.0;ODDS=25.8954;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=55.0379;MQMR=60.0;PAIRED=0.992424;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.362;Dels=0.0;FS=0.0;HaplotypeScore=8.6899;MLEAC=1;MLEAF=0.75;MQ=56.055;MQRankSum=0.002;QD=23.05;ReadPosRankSum=-0.576;SOR=0.933	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:105.7265:40:0:0:40:1370:-122.667,-10.8203,0.0:40:100:40:0,40:1511,119,0:1:.:1:.:.:.:0.0100567	0/1:129.501:139:46:1569:92:2933:-225.187,0.0,-103.996:92:67:138:46,92:2695,0,1368:.:1:1:.:.:.:-0.0152891
chr13	41191572	.	C	A	186.832	REJECT	NS=2;DP=187;DPB=284.034;AC=2;AN=2;AF=0.0;RO=75;AO=4;PRO=45.8333;PAO=33.7833;QR=2736;QA=56;PQR=1647.77;PQA=1208.72;SRF=42;SRR=33;SAF=0;SAR=4;SRP=5.35549;SAP=11.6962;AB=0.0213904;ABP=375.075;RUN=1;RPP=5.18177;RPPR=84.3392;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=6.51361;DPRA=0.0;ODDS=8.16824;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=5;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:34.5051:55:18:650:3:42:-5.41719,-24.4055,-267.43:3:7:42:.:.:1:.:.:.:0.0100567	./1:77.2394:132:57:2086:1:14:-20.2567,-66.1386,-587.72:1:1:91:.:.:1:.:.:.:-0.0152891
chr13	41191572	.	C	CA	186.832	REJECT	NS=2;DP=187;DPB=284.034;AC=2;AN=3;AF=0.25;RO=75;AO=17;PRO=45.8333;PAO=44.3333;QR=2736;QA=517;PQR=1647.77;PQA=1556.27;SRF=42;SRR=33;SAF=10;SAR=7;SRP=5.35549;SAP=4.1599;AB=0.0909091;ABP=274.839;RUN=1;RPP=24.5973;RPPR=84.3392;RPL=2.0;RPR=15.0;EPP=9.26925;EPPR=6.51361;DPRA=0.0;ODDS=8.16824;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=5;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:34.5051:55:18:650:3:104:-5.41719,-3.09858,-71.2395:3:7:42:.:.:1:.:.:.:0.0100567	0/1:77.2394:132:57:2086:14:413:-20.2567,0.0,-196.607:14:15:91:.:.:1:.:.:.:-0.0152891
chr13	41191572	.	CA	C	186.832	REJECT	NS=2;DP=187;DPB=284.034;AC=2;AN=3;AF=0.25;RO=75;AO=20;PRO=45.8333;PAO=38.5833;QR=2736;QA=644;PQR=1647.77;PQA=1384.52;SRF=42;SRR=33;SAF=14;SAR=6;SRP=5.35549;SAP=9.95901;AB=0.106952;ABP=253.937;RUN=1;RPP=4.74748;RPPR=84.3392;RPL=8.0;RPR=12.0;EPP=4.74748;EPPR=6.51361;DPRA=0.0;ODDS=8.16824;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=5;MEANALT=24.0;LEN=1;MQM=59.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:34.5051:55:18:650:6:150:-5.41719,0.0,-100.667:6:14:42:.:.:1:.:.:.:0.0100567	./1:77.2394:132:57:2086:14:494:-20.2567,-9.14063,-332.782:14:15:91:.:.:1:.:.:.:-0.0152891
chr13	41191587	.	G	A	186.832	REJECT	NS=2;DP=187;DPB=284.034;AC=2;AN=2;AF=0.0;RO=75;AO=3;PRO=45.8333;PAO=26.0833;QR=2736;QA=42;PQR=1647.77;PQA=850.517;SRF=42;SRR=33;SAF=3;SAR=0;SRP=5.35549;SAP=9.52472;AB=0.0545455;ABP=97.8049;RUN=1;RPP=3.73412;RPPR=84.3392;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=6.51361;DPRA=0.0;ODDS=8.16824;GTI=0;TYPE=snp;CIGAR=15M1X13M;NUMALT=5;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:34.5051:55:18:650:3:42:-5.41719,-24.6805,-275.142:3:7:42:.:.:1:.:.:.:0.0100567	./1:77.2394:132:57:2086:0:0:-20.2567,-98.0218,-977.332:0:0:91:.:.:1:.:.:.:-0.0152891
chr13	41191593	.	T	G	186.832	REJECT	NS=2;DP=187;DPB=284.034;AC=2;AN=2;AF=0.0;RO=75;AO=14;PRO=45.8333;PAO=22.3833;QR=2736;QA=229;PQR=1647.77;PQA=720.217;SRF=42;SRR=33;SAF=14;SAR=0;SRP=5.35549;SAP=33.4109;AB=0.0748663;ABP=296.577;RUN=1;RPP=12.937;RPPR=84.3392;RPL=11.0;RPR=3.0;EPP=12.937;EPPR=6.51361;DPRA=0.0;ODDS=8.16824;GTI=0;TYPE=snp;CIGAR=21M1X7M;NUMALT=5;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:34.5051:55:18:650:9:135:-5.41719,-29.3177,-411.107:9:21:42:.:.:1:.:.:.:0.0100567	./1:77.2394:132:57:2086:5:94:-20.2567,-127.496,-1439.33:5:5:91:.:.:1:.:.:.:-0.0152891
chr13	41192645	.	G	A	9733.335	REJECT	NS=2;DP=406;DPB=475.0;AC=3;AN=4;AF=0.75;RO=122;AO=353;PRO=0.0;PAO=0.0;QR=4709;QA=13528;PQR=0.0;PQA=0.0;SRF=58;SRR=64;SAF=180;SAR=173;SRP=3.65106;SAP=3.31172;AB=0.640118;ABP=60.8201;RUN=1;RPP=5.23098;RPPR=5.57335;RPL=186.0;RPR=167.0;EPP=4.0499;EPPR=3.29508;DPRA=0.0;ODDS=85.8214;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994334;PAIREDR=0.991803;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.05;Dels=0.0;FS=0.2055;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.097;QD=24.69;ReadPosRankSum=1.518;SOR=0.893	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:134:0:0:136:5204:-468.28,-36.8458,0.0:134:100:134:0,133:5470,399,0:1:.:1:.:.:.:0.0100567	0/1:129.501:338:122:4709:217:8324:-656.856,0.0,-331.738:217:64:338:121,217:8307,0,4262:.:1:1:.:.:.:-0.0152891
chr13	41193475	.	C	T	7439.74	REJECT	NS=2;DP=316;DPB=356.0;AC=3;AN=4;AF=0.75;RO=97;AO=258;PRO=0.0;PAO=0.0;QR=3722;QA=9922;PQR=0.0;PQA=0.0;SRF=72;SRR=25;SAF=178;SAR=80;SRP=52.4617;SAP=83.8429;AB=0.647482;ABP=55.5318;RUN=1;RPP=31.3236;RPPR=3.56996;RPL=100.0;RPR=158.0;EPP=3.3133;EPPR=11.0918;DPRA=0.0;ODDS=49.629;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992248;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.602;Dels=0.0;FS=2.8195;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.008;QD=27.29;ReadPosRankSum=-1.126;SOR=1.2295	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:0:0:78:2959:-266.411,-21.1276,0.0:77:100:77:0,77:3198,231,0:1:.:1:.:.:.:0.0100567	0/1:129.501:277:97:3722:180:6963:-551.278,0.0,-259.768:179:65:276:97,179:6900,0,3327:.:1:1:.:.:.:-0.0152891
chr13	41194936	.	C	G	181.179	REJECT	SOMATIC;NS=2;DP=56;DPB=120.76;AC=1;AN=3;AF=0.0;RO=14;AO=3;PRO=47.75;PAO=6.25;QR=470;QA=44;PQR=1700.17;PQA=208.5;SRF=2;SRR=12;SAF=0;SAR=3;SRP=18.5208;SAP=9.52472;AB=0.0625;ABP=82.8119;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=5.49198;DPRA=6.0;ODDS=1.60634;GTI=0;TYPE=snp;CIGAR=1X24M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=58.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:7.73558:8:0:0:0:0:-3.06885,-23.4345,-242.898:0:0:1:.:.:.:.:.:.:0.0100567	./1:160.002:48:14:470:3:44:-19.3293,-67.1034,-599.627:3:10:29:.:.:1:.:.:.:-0.0152891
chr13	41194936	.	C	CT	181.179	REJECT	NS=2;DP=56;DPB=120.76;AC=3;AN=4;AF=0.75;RO=14;AO=8;PRO=47.75;PAO=46.75;QR=470;QA=237;PQR=1700.17;PQA=1647.17;SRF=2;SRR=12;SAF=4;SAR=4;SRP=18.5208;SAP=3.0103;AB=0.145833;ABP=55.3066;RUN=1;RPP=7.35324;RPPR=3.0103;RPL=6.0;RPR=2.0;EPP=7.35324;EPPR=5.49198;DPRA=0.0;ODDS=1.60634;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=57.5;MQMR=58.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:7.73558:8:0:0:1:34:-3.06885,-0.271656,0.0:1:100:1:.:.:1:.:.:.:0.0100567	0/1:160.002:48:14:470:7:203:-19.3293,0.0,-48.0857:7:24:29:.:.:1:.:.:.:-0.0152891
chr13	41194936	.	CT	C	181.179	REJECT	SOMATIC;NS=2;DP=56;DPB=120.76;AC=1;AN=3;AF=0.0;RO=14;AO=5;PRO=47.75;PAO=28.25;QR=470;QA=150;PQR=1700.17;PQA=973.167;SRF=2;SRR=12;SAF=2;SAR=3;SRP=18.5208;SAP=3.44459;AB=0.104167;ABP=68.3354;RUN=1;RPP=3.44459;RPPR=3.0103;RPL=3.0;RPR=2.0;EPP=6.91895;EPPR=5.49198;DPRA=6.0;ODDS=1.60634;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=58.5714;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:7.73558:8:0:0:0:0:-3.06885,-7.95061,-62.5947:0:0:1:.:.:.:.:.:.:0.0100567	./1:160.002:48:14:470:5:150:-19.3293,-18.1331,-229.308:5:17:29:.:.:1:.:.:.:-0.0152891
chr13	41195411	.	G	A	7790.485000000001	REJECT	NS=2;DP=350;DPB=401.0;AC=3;AN=4;AF=0.75;RO=117;AO=284;PRO=0.0;PAO=0.0;QR=4483;QA=10729;PQR=0.0;PQA=0.0;SRF=69;SRR=48;SAF=165;SAR=119;SRP=11.1951;SAP=19.1893;AB=0.614618;ABP=37.3571;RUN=1;RPP=22.1254;RPPR=6.14687;RPL=117.0;RPR=167.0;EPP=10.8398;EPPR=3.17734;DPRA=0.0;ODDS=54.6722;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9145;PAIRED=0.989437;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.424;Dels=0.0;FS=3.781;HaplotypeScore=6.8323;MLEAC=1;MLEAF=0.75;MQ=59.985;MQRankSum=0.2835;QD=26.605;ReadPosRankSum=0.4335;SOR=0.8515;ClippingRankSum=0.935	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.413:100:1:40:99:3702:-329.599,-23.4662,0.0:99:99:100:1,99:3836,254,0:1:.:1:.:.:.:0.0100567	0/1:124.413:300:116:4443:185:7027:-550.536,0.0,-318.135:184:61:300:116,184:6911,0,4072:.:1:1:.:.:.:-0.0152891
chr13	41195992	.	T	C	8432.985	REJECT	NS=2;DP=378;DPB=439.0;AC=3;AN=4;AF=0.75;RO=125;AO=314;PRO=0.0;PAO=0.0;QR=4796;QA=11862;PQR=0.0;PQA=0.0;SRF=66;SRR=59;SAF=147;SAR=167;SRP=3.86152;SAP=5.77651;AB=0.606918;ABP=34.5854;RUN=1;RPP=11.9728;RPPR=3.16665;RPL=175.0;RPR=139.0;EPP=7.68519;EPPR=12.2;DPRA=0.0;ODDS=76.326;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6178;MQMR=60.0;PAIRED=0.996815;PAIREDR=0.992;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.659;Dels=0.0;FS=1.5555;HaplotypeScore=4.8563;MLEAC=1;MLEAF=0.75;MQ=59.95;MQRankSum=-1.432;QD=26.915;ReadPosRankSum=0.993;SOR=0.778	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:121:4541:-404.394,-32.722,0.0:119:100:119:0,118:5428,370,0:1:.:1:.:.:.:0.0100567	0/1:129.501:318:125:4796:193:7321:-572.379,0.0,-345.272:193:61:318:125,193:7202,0,4416:.:1:1:.:.:.:-0.0152891
chr13	41196006	.	T	G	8606.875	REJECT	NS=2;DP=389;DPB=443.0;AC=3;AN=4;AF=0.75;RO=128;AO=314;PRO=0.0;PAO=0.0;QR=4853;QA=11917;PQR=0.0;PQA=0.0;SRF=73;SRR=55;SAF=156;SAR=158;SRP=8.50684;SAP=3.03796;AB=0.616071;ABP=42.3295;RUN=1;RPP=6.35741;RPPR=3.28173;RPL=168.0;RPR=146.0;EPP=20.2991;EPPR=8.50684;DPRA=0.0;ODDS=67.6107;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=57.8535;MQMR=60.0;PAIRED=0.990446;PAIREDR=0.992188;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.052;Dels=0.0;FS=1.512;HaplotypeScore=8.6812;MLEAC=1;MLEAF=0.75;MQ=58.915;MQRankSum=0.595;QD=27.045;ReadPosRankSum=0.408;SOR=0.751	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.0475:106:0:0:107:4045:-359.298,-28.937,0.0:106:100:106:0,105:4899,328,0:1:.:1:.:.:.:0.0100567	0/1:125.0475:336:128:4853:207:7872:-606.783,0.0,-346.034:207:62:335:128,207:7661,0,4425:.:1:1:.:.:.:-0.0152891
chr13	41196016	.	C	T	9143.07	REJECT	NS=2;DP=403;DPB=455.0;AC=3;AN=4;AF=0.75;RO=133;AO=322;PRO=0.0;PAO=0.0;QR=5095;QA=12423;PQR=0.0;PQA=0.0;SRF=74;SRR=59;SAF=162;SAR=160;SRP=6.68384;SAP=3.03727;AB=0.622159;ABP=48.6359;RUN=1;RPP=3.68467;RPPR=4.98585;RPL=156.0;RPR=166.0;EPP=9.07963;EPPR=16.7412;DPRA=0.0;ODDS=65.1469;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.8882;MQMR=60.0;PAIRED=0.990683;PAIREDR=0.992481;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.886;Dels=0.0;FS=1.4665;HaplotypeScore=6.7656;MLEAC=1;MLEAF=0.75;MQ=58.91;MQRankSum=-1.84;QD=27.265;ReadPosRankSum=-0.553;SOR=0.6705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.8345:102:0:0:103:3944:-349.577,-27.867,0.0:102:100:102:0,101:4651,316,0:1:.:1:.:.:.:0.0100567	0/1:118.8345:352:133:5095:219:8479:-655.968,0.0,-363.156:219:62:352:133,219:8325,0,4615:.:1:1:.:.:.:-0.0152891
chr13	41196407	.	C	T	10018.735	REJECT	NS=2;DP=427;DPB=493.0;AC=3;AN=4;AF=0.75;RO=134;AO=358;PRO=0.0;PAO=0.0;QR=5145;QA=13803;PQR=0.0;PQA=0.0;SRF=63;SRR=71;SAF=181;SAR=177;SRP=4.04742;SAP=3.10735;AB=0.627072;ABP=53.782;RUN=1;RPP=4.56308;RPPR=3.59368;RPL=171.0;RPR=187.0;EPP=5.94603;EPPR=15.715;DPRA=0.0;ODDS=82.7535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988827;PAIREDR=0.985075;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.559;Dels=0.0;FS=2.8325;HaplotypeScore=7.7654;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.302;QD=26.525;ReadPosRankSum=-0.246;SOR=0.832	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:129:0:0:131:5113:-460.106,-35.5134,0.0:129:100:129:0,127:5192,382,0:1:.:1:.:.:.:0.0100567	0/1:129.501:361:134:5145:227:8690:-683.823,0.0,-364.96:227:63:360:133,227:8691,0,4592:.:1:1:.:.:.:-0.0152891
chr13	41197260	.	T	TA	488.814	REJECT	NS=2;DP=405;DPB=477.05;AC=2;AN=2;AF=0.0;RO=279;AO=33;PRO=70.5;PAO=51.5;QR=10282;QA=1120;PQR=2424.67;PQA=1754.67;SRF=132;SRR=147;SAF=16;SAR=17;SRP=4.76149;SAP=3.0761;AB=0.0814815;ABP=619.178;RUN=1;RPP=3.60252;RPPR=3.64073;RPL=18.0;RPR=15.0;EPP=3.0761;EPPR=3.64073;DPRA=0.0;ODDS=31.4713;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982079;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:125.766:98:63:2372:10:319:-21.6004,-12.7766,-239.074:10:11:87:.:.:1:.:.:.:0.0100567	./1:137.873:307:216:7910:23:801:-32.8413,-24.9916,-700.053:23:8:271:.:.:1:.:.:.:-0.0152891
chr13	41197260	.	TA	T	488.814	REJECT	NS=2;DP=405;DPB=477.05;AC=2;AN=4;AF=0.5;RO=279;AO=46;PRO=70.5;PAO=48.0;QR=10282;QA=1665;PQR=2424.67;PQA=1624.67;SRF=132;SRR=147;SAF=26;SAR=20;SRP=4.76149;SAP=4.70971;AB=0.11358;ABP=528.287;RUN=1;RPP=3.0103;RPPR=3.64073;RPL=23.0;RPR=23.0;EPP=6.03148;EPPR=3.64073;DPRA=0.0;ODDS=31.4713;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=17.0;LEN=1;MQM=61.3043;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982079;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.913;FS=3.884;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.674;QD=0.49;ReadPosRankSum=0.06;SOR=1.048;ClippingRankSum=0.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:111.883:99:63:2372:14:511:-21.6004,0.0,-231.929:14:15:93:85,15:98,0,1882:1:.:1:.:.:.:0.0100567	0/1:137.873:307:216:7910:32:1154:-32.8413,0.0,-684.941:32:12:271:.:.:.:.:1:.:.:.:-0.0152891
chr13	41198058	.	TA	T	1363.69	REJECT	SOMATIC;NS=2;DP=35;DPB=114.0;AC=1;AN=3;AF=0.0;RO=6;AO=2;PRO=30.369;PAO=27.619;QR=229;QA=73;PQR=1050.96;PQA=952.714;SRF=0;SRR=6;SAF=1;SAR=1;SRP=16.0391;SAP=3.0103;AB=0.0645161;ABP=54.0749;RUN=1;RPP=7.35324;RPPR=4.45795;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=del;CIGAR=1M1D36M;NUMALT=6;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.60155:4:0:0:0:0:-57.1838,-40.0096,-123.801:0:0:3:.:.:.:.:.:.:0.0100567	./1:11.3269:31:6:229:2:73:-83.897,-65.8811,-319.134:2:8:24:.:.:1:.:.:.:-0.0152891
chr13	41198074	.	AA	T	1363.69	REJECT	SOMATIC;NS=2;DP=35;DPB=114.0;AC=1;AN=3;AF=0.0;RO=6;AO=2;PRO=30.369;PAO=17.2857;QR=229;QA=78;PQR=1050.96;PQA=539.548;SRF=0;SRR=6;SAF=2;SAR=0;SRP=16.0391;SAP=7.35324;AB=0.0645161;ABP=54.0749;RUN=1;RPP=3.0103;RPPR=4.45795;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=complex;CIGAR=1M1D15M1X20M;NUMALT=6;MEANALT=13.0;LEN=37;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.60155:4:0:0:0:0:-57.1838,-41.2677,-130.378:0:0:3:.:.:.:.:.:.:0.0100567	./1:11.3269:31:6:229:2:78:-83.897,-47.7535,-393.336:2:8:24:.:.:1:.:.:.:-0.0152891
chr13	41198075	.	A	T	1363.69	REJECT	NS=2;DP=35;DPB=114.0;AC=2;AN=2;AF=0.25;RO=6;AO=7;PRO=30.369;PAO=24.9524;QR=229;QA=239;PQR=1050.96;PQA=862.881;SRF=0;SRR=6;SAF=2;SAR=5;SRP=16.0391;SAP=5.80219;AB=0.2;ABP=30.3709;RUN=1;RPP=3.32051;RPPR=4.45795;RPL=3.0;RPR=4.0;EPP=5.80219;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=snp;CIGAR=17M1X20M;NUMALT=6;MEANALT=8.0;LEN=1;MQM=59.8571;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=1;BaseQRankSum=0.751;Dels=0.01;FS=6.113;HaplotypeScore=30.6386;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=0.758;QD=5.67;ReadPosRankSum=-0.573;SOR=0.271	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.60155:4:0:0:1:39:-57.1838,-0.458635,-86.0406:1:33:3:.:.:.:.:1:.:.:.:0.0100567	./1:55.16345:74:6:229:6:200:-83.897,-5.38569,-333.188:16:24:70:90,27:697,0,3100:.:1:1:.:.:.:-0.0152891
chr13	41198075	.	A	AT	1363.69	REJECT	NS=2;DP=35;DPB=114.0;AC=2;AN=3;AF=0.5;RO=6;AO=6;PRO=30.369;PAO=32.7024;QR=229;QA=205;PQR=1050.96;PQA=1119.13;SRF=0;SRR=6;SAF=3;SAR=3;SRP=16.0391;SAP=3.0103;AB=0.171429;ABP=35.8306;RUN=1;RPP=3.0103;RPPR=4.45795;RPL=3.0;RPR=3.0;EPP=16.0391;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=ins;CIGAR=18M1I20M;NUMALT=6;MEANALT=8.0;LEN=1;MQM=59.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.60155:4:0:0:2:74:-57.1838,-18.1745,-26.3607:2:67:3:.:.:1:.:.:.:0.0100567	0/1:11.3269:31:6:229:4:131:-83.897,0.0,-93.804:4:17:24:.:.:1:.:.:.:-0.0152891
chr13	41198075	.	AT	A	1363.69	REJECT	SOMATIC;NS=2;DP=35;DPB=114.0;AC=1;AN=3;AF=0.0;RO=6;AO=2;PRO=30.369;PAO=17.869;QR=229;QA=78;PQR=1050.96;PQA=606.964;SRF=0;SRR=6;SAF=2;SAR=0;SRP=16.0391;SAP=7.35324;AB=0.0645161;ABP=54.0749;RUN=1;RPP=3.0103;RPPR=4.45795;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=del;CIGAR=18M1D19M;NUMALT=6;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.60155:4:0:0:0:0:-57.1838,-60.7117,-99.1877:0:0:3:.:.:.:.:.:.:0.0100567	./1:11.3269:31:6:229:2:78:-83.897,-89.3435,-216.728:2:8:24:.:.:1:.:.:.:-0.0152891
chr13	41198091	.	A	T	1363.69	REJECT	SOMATIC;NS=2;DP=35;DPB=114.0;AC=1;AN=3;AF=0.0;RO=6;AO=2;PRO=30.369;PAO=15.2024;QR=229;QA=32;PQR=1050.96;PQA=521.798;SRF=0;SRR=6;SAF=2;SAR=0;SRP=16.0391;SAP=7.35324;AB=0.0645161;ABP=54.0749;RUN=1;RPP=7.35324;RPPR=4.45795;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=4.45795;DPRA=0.0;ODDS=0.694892;GTI=1;TYPE=snp;CIGAR=33M1X4M;NUMALT=6;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:1.60155:4:0:0:0:0:-57.1838,-72.9174,-235.216:0:0:3:.:.:.:.:.:.:0.0100567	./1:11.3269:31:6:229:2:32:-83.897,-121.921,-534.59:2:8:24:.:.:1:.:.:.:-0.0152891
chr13	41198454	.	T	TTAA	1106.95	REJECT	SOMATIC;NS=2;DP=145;DPB=231.4;AC=1;AN=3;AF=0.0;RO=56;AO=3;PRO=15.0;PAO=9.66667;QR=1859;QA=48;PQR=445.75;PQA=292.083;SRF=42;SRR=14;SAF=1;SAR=2;SRP=33.4109;SAP=3.73412;AB=0.00925926;ABP=228.924;RUN=1;RPP=9.52472;RPPR=15.5738;RPL=0.0;RPR=3.0;EPP=3.73412;EPPR=3.16541;DPRA=0.0;ODDS=8.02068;GTI=0;TYPE=ins;CIGAR=3M3I2M;NUMALT=3;MEANALT=11.0;LEN=3;MQM=58.6667;MQMR=56.5536;PAIRED=0.666667;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:34.833:37:2:56:2:32:-79.8925,-60.2208,-63.7669:2:6:31:.:.:.:.:.:.:0.0100567	./1:138.0:108:54:1803:1:16:-53.1762,-67.9808,-226.819:1:1:93:.:.:1:.:.:.:-0.0152891
chr13	41198454	.	T	TTAAA	1106.95	REJECT	NS=2;DP=145;DPB=231.4;AC=3;AN=3;AF=0.5;RO=56;AO=30;PRO=15.0;PAO=9.66667;QR=1859;QA=794;PQR=445.75;PQA=292.083;SRF=42;SRR=14;SAF=19;SAR=11;SRP=33.4109;SAP=7.64277;AB=0.0277778;ABP=212.195;RUN=1;RPP=38.0434;RPPR=15.5738;RPL=26.0;RPR=4.0;EPP=13.4334;EPPR=3.16541;DPRA=0.0;ODDS=8.02068;GTI=0;TYPE=ins;CIGAR=3M4I2M;NUMALT=3;MEANALT=11.0;LEN=4;MQM=64.1;MQMR=56.5536;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=65.62;QD=31.26;SOR=2.833	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:65.9165:34:2:56:27:743:-79.8925,-3.16606,0.0:29:93:31:0,31:1098,97,0:1:.:1:.:.:.:0.0100567	./1:138.0:108:54:1803:3:51:-53.1762,-65.3704,-223.681:3:3:93:.:.:.:.:1:.:.:.:-0.0152891
chr13	41198454	.	T	TTAAAA	1106.95	REJECT	SOMATIC;NS=2;DP=145;DPB=231.4;AC=1;AN=4;AF=0.25;RO=56;AO=35;PRO=15.0;PAO=9.66667;QR=1859;QA=881;PQR=445.75;PQA=292.083;SRF=42;SRR=14;SAF=27;SAR=8;SRP=33.4109;SAP=25.4075;AB=0.324074;ABP=32.0437;RUN=1;RPP=48.239;RPPR=15.5738;RPL=31.0;RPR=4.0;EPP=16.9698;EPPR=3.16541;DPRA=2.91892;ODDS=8.02068;GTI=0;TYPE=ins;CIGAR=3M5I2M;NUMALT=3;MEANALT=14.0;LEN=5;MQM=59.8;MQMR=56.5536;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.511;FS=4.234;MLEAC=1;MLEAF=0.5;MQ=58.75;MQRankSum=3.281;QD=8.16;ReadPosRankSum=-1.483;SOR=0.426	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:34.833:37:2:56:0:0:-79.8925,-62.5652,-66.6347:0:0:31:.:.:.:.:.:.:.:.:0.0100567	0/1:118.5:121:54:1803:35:881:-53.1762,0.0,-149.819:47:42:111:70,60:1914,0,2755:.:1:1:.:.:.:-0.0152891
chr13	41199421	.	G	A	10258.935000000001	REJECT	NS=2;DP=434;DPB=500.0;AC=3;AN=4;AF=0.75;RO=129;AO=371;PRO=0.0;PAO=0.0;QR=4869;QA=14044;PQR=0.0;PQA=0.0;SRF=61;SRR=68;SAF=195;SAR=176;SRP=3.83512;SAP=5.12324;AB=0.650407;ABP=75.5163;RUN=1;RPP=6.66844;RPPR=4.37378;RPL=173.0;RPR=198.0;EPP=13.8325;EPPR=11.915;DPRA=0.0;ODDS=82.6969;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997305;PAIREDR=0.992248;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.577;Dels=0.0;FS=1.1915;HaplotypeScore=9.7553;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.031;QD=26.43;ReadPosRankSum=-0.913;SOR=0.784	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:130:0:0:131:5000:-449.944,-35.4888,0.0:130:100:130:0,130:5174,390,0:1:.:1:.:.:.:0.0100567	0/1:129.501:368:129:4869:240:9044:-713.549,0.0,-338.046:239:65:368:129,239:8988,0,4288:.:1:1:.:.:.:-0.0152891
chr13	41199487	.	A	C	10278.735	REJECT	NS=2;DP=441;DPB=516.0;AC=3;AN=4;AF=0.75;RO=138;AO=378;PRO=0.0;PAO=0.0;QR=5262;QA=14440;PQR=0.0;PQA=0.0;SRF=79;SRR=59;SAF=196;SAR=182;SRP=9.30442;SAP=4.13625;AB=0.623978;ABP=52.0075;RUN=1;RPP=3.21711;RPPR=4.01736;RPL=192.0;RPR=186.0;EPP=11.3056;EPPR=6.09442;DPRA=0.0;ODDS=93.9314;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997354;PAIREDR=0.992754;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.651;Dels=0.0;FS=2.765;HaplotypeScore=8.7479;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.541;QD=26.575;ReadPosRankSum=1.882;SOR=0.6505	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.3375:149:0:0:149:5700:-512.892,-40.3679,0.0:149:100:149:0,149:6102,447,0:1:.:1:.:.:.:0.0100567	0/1:120.3375:366:138:5262:229:8740:-687.074,0.0,-373.893:228:62:366:138,228:8656,0,4806:.:1:1:.:.:.:-0.0152891
chr13	41199531	.	A	G	9813.485	REJECT	NS=2;DP=417;DPB=483.0;AC=3;AN=4;AF=0.75;RO=127;AO=356;PRO=0.0;PAO=0.0;QR=4860;QA=13530;PQR=0.0;PQA=0.0;SRF=69;SRR=58;SAF=198;SAR=158;SRP=5.07918;SAP=12.7697;AB=0.639205;ABP=62.257;RUN=1;RPP=4.98658;RPPR=3.43776;RPL=169.0;RPR=187.0;EPP=3.22989;EPPR=3.16418;DPRA=0.0;ODDS=82.662;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997191;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.641;Dels=0.0;FS=0.0;HaplotypeScore=12.6616;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.96;QD=25.485;ReadPosRankSum=-2.504;SOR=0.842	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:130:0:0:131:4987:-448.752,-35.4737,0.0:130:100:130:0,130:5391,390,0:1:.:1:.:.:.:0.0100567	0/1:129.501:351:127:4860:225:8543:-673.057,0.0,-341.808:224:64:351:127,224:8509,0,4365:.:1:1:.:.:.:-0.0152891
chr13	41199697	.	G	A	2759.61	PASS	SOMATIC;NS=2;DP=439;DPB=439.0;AC=1;AN=3;AF=0.25;RO=330;AO=108;PRO=0.0;PAO=0.0;QR=12397;QA=4089;PQR=0.0;PQA=0.0;SRF=137;SRR=193;SAF=39;SAR=69;SRP=23.6459;SAP=21.1059;AB=0.345048;ABP=68.2863;RUN=1;RPP=4.2971;RPPR=16.934;RPL=50.0;RPR=58.0;EPP=5.02092;EPPR=4.69484;DPRA=2.48413;ODDS=79.5066;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.984848;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.547;Dels=0.0;FS=4.035;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.241;QD=11.61;ReadPosRankSum=0.462;SOR=0.945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.083:124:126:4722:0:0:0.0,-34.1033,-424.926:0:0:124:123,0:.:0.0:0:.:.:.:0:.:.:0:0.0100567	0/1:119.0415:313:204:7675:108:4089:-283.326,0.0,-605.884:108:35:312:198,104:38.0:0.345:2:3662,0,7662:.:1:1:.:.:1:-0.0152891
chr13	41199795	.	T	TA	3786.08	REJECT	NS=2;DP=267;DPB=348.72;AC=2;AN=2;AF=0.0;RO=60;AO=11;PRO=54.5833;PAO=46.5833;QR=2212;QA=394;PQR=1923.33;PQA=1626.33;SRF=23;SRR=37;SAF=7;SAR=4;SRP=10.1038;SAP=4.78696;AB=0.0411985;ABP=491.185;RUN=1;RPP=4.78696;RPPR=8.22183;RPL=4.0;RPR=7.0;EPP=4.78696;EPPR=4.31318;DPRA=0.0;ODDS=26.2498;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=60.0;MQMR=59.8667;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:113.896:72:13:491:1:37:-116.804,-117.54,-161.093:1:2:64:.:.:1:.:.:.:0.0100567	./1:130.106:195:47:1721:10:357:-268.11,-245.325,-414.04:10:6:167:.:.:1:.:.:.:-0.0152891
chr13	41199795	.	TA	T	3037.9049999999997	REJECT	NS=2;DP=267;DPB=348.72;AC=2;AN=4;AF=0.5;RO=60;AO=130;PRO=54.5833;PAO=57.5833;QR=2212;QA=4443;PQR=1923.33;PQA=1957.83;SRF=23;SRR=37;SAF=69;SAR=61;SRP=10.1038;SAP=4.07933;AB=0.486891;ABP=3.40881;RUN=1;RPP=6.28421;RPPR=8.22183;RPL=58.0;RPR=72.0;EPP=4.07933;EPPR=4.31318;DPRA=0.0;ODDS=26.2498;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=60.5231;MQMR=59.8667;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.044;FS=4.11;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.1485;QD=9.745;RPA=15,14;RU=A;ReadPosRankSum=0.343;SOR=0.561;STR;ClippingRankSum=-0.02	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:106.448:70:13:491:40:1349:-116.804,0.0,-31.9721:46:70:66:15,53:900,0,165:1:.:1:.:.:.:0.0100567	0/1:114.553:231:47:1721:90:3094:-268.11,0.0,-169.045:115:58:194:82,140:2327,0,965:.:1:1:.:.:.:-0.0152891
chr13	41199795	.	TAA	T	3786.08	REJECT	NS=2;DP=267;DPB=348.72;AC=2;AN=2;AF=0.0;RO=60;AO=30;PRO=54.5833;PAO=41.25;QR=2212;QA=1066;PQR=1923.33;PQA=1426.5;SRF=23;SRR=37;SAF=17;SAR=13;SRP=10.1038;SAP=4.16842;AB=0.11236;ABP=351.495;RUN=1;RPP=4.16842;RPPR=8.22183;RPL=13.0;RPR=17.0;EPP=10.2485;EPPR=4.31318;DPRA=0.0;ODDS=26.2498;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=18.5;LEN=2;MQM=60.0;MQMR=59.8667;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:113.896:72:13:491:10:373:-116.804,-87.3055,-128.149:10:16:64:.:.:1:.:.:.:0.0100567	./1:130.106:195:47:1721:20:693:-268.11,-232.051,-459.885:20:12:167:.:.:1:.:.:.:-0.0152891
chr13	41200091	.	A	G	6219.030000000001	REJECT	NS=2;DP=288;DPB=339.0;AC=3;AN=4;AF=0.75;RO=102;AO=237;PRO=0.0;PAO=0.0;QR=3969;QA=9011;PQR=0.0;PQA=0.0;SRF=33;SRR=69;SAF=80;SAR=157;SRP=30.6008;SAP=57.3338;AB=0.575;ABP=14.7363;RUN=1;RPP=39.3756;RPPR=15.2727;RPL=150.0;RPR=87.0;EPP=23.2499;EPPR=3.09546;DPRA=0.0;ODDS=62.7097;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987342;PAIREDR=0.980392;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.259;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.429;QD=26.8;ReadPosRankSum=-2.681;SOR=1.0135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.2185:97:0:0:99:3719:-334.741,-26.8085,0.0:97:100:97:0,96:4002,288,0:1:.:1:.:.:.:0.0100567	0/1:123.2185:238:102:3969:138:5292:-411.022,0.0,-292.005:137:58:238:100,137:5178,0,3656:.:1:1:.:.:.:-0.0152891
chr13	41201633	.	G	A	8262.125	REJECT	NS=2;DP=377;DPB=427.0;AC=3;AN=4;AF=0.75;RO=130;AO=297;PRO=0.0;PAO=0.0;QR=5041;QA=11181;PQR=0.0;PQA=0.0;SRF=43;SRR=87;SAF=110;SAR=187;SRP=35.3485;SAP=46.3593;AB=0.604863;ABP=34.4339;RUN=1;RPP=5.12328;RPPR=11.0949;RPL=157.0;RPR=140.0;EPP=3.19308;EPPR=3.27756;DPRA=0.0;ODDS=62.0782;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983165;PAIREDR=0.984615;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.312;Dels=0.0;FS=2.657;HaplotypeScore=6.8118;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.255;QD=26.255;ReadPosRankSum=0.257;SOR=1.0175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:98:3609:-324.868,-26.5342,0.0:95:100:95:0,92:3773,277,0:1:.:1:.:.:.:-0.480745	0/1:129.501:328:130:5041:199:7572:-591.958,0.0,-364.312:199:60:328:129,199:7489,0,4608:.:1:1:.:.:.:-0.0152891
chr13	41202322	.	T	A	5896.3150000000005	REJECT	NS=2;DP=365;DPB=424.0;AC=2;AN=4;AF=0.5;RO=203;AO=221;PRO=0.0;PAO=0.0;QR=7603;QA=8283;PQR=0.0;PQA=0.0;SRF=98;SRR=105;SAF=94;SAR=127;SRP=3.53445;SAP=13.7105;AB=0.521226;ABP=4.66963;RUN=1;RPP=5.22108;RPPR=3.021;RPL=118.0;RPR=103.0;EPP=5.22108;EPPR=4.30463;DPRA=0.0;ODDS=330.176;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9095;MQMR=60.0;PAIRED=0.995475;PAIREDR=0.995074;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.564;Dels=0.0;FS=4.139;HaplotypeScore=6.8988;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.5915;QD=18.1;ReadPosRankSum=0.4255;SOR=0.806;ClippingRankSum=1.175	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.304:116:53:1951:64:2392:-183.461,0.0,-143.904:63:54:116:53,63:2124,0,1672:1:.:1:.:.:.:-0.480745	0/1:121.304:306:150:5652:157:5891:-446.748,0.0,-425.317:156:51:306:150,156:5595,0,5446:.:1:1:.:.:.:-0.0152891
chr13	41202493	.	T	TAC	3332.72	REJECT	NS=2;DP=222;DPB=365.949;AC=2;AN=3;AF=0.5;RO=47;AO=97;PRO=70.0;PAO=71.6667;QR=1745;QA=3411;PQR=2429.75;PQA=2449.75;SRF=30;SRR=17;SAF=57;SAR=40;SRP=10.8184;SAP=9.47994;AB=0.436937;ABP=10.6789;RUN=1;RPP=8.04722;RPPR=6.75262;RPL=56.0;RPR=41.0;EPP=4.82359;EPPR=3.42611;DPRA=0.0;ODDS=47.042;GTI=0;TYPE=ins;CIGAR=1M2I38M;NUMALT=3;MEANALT=15.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.494;FS=3.6745;MLEAC=1;MLEAF=0.5;MQ=60.01;MQRankSum=-0.548;QD=13.145;RPA=17,18;RU=AC;ReadPosRankSum=0.946;SOR=0.5185;STR;ClippingRankSum=-1.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.983:52:3:104:18:665:-111.302,-35.2566,-36.5186:20:43:46:7,22:1196,629,1069:1:.:1:.:.:.:-0.480745	0/1:115.983:215:44:1641:79:2746:-232.155,0.0,-118.634:95:60:157:63,111:3395,0,1692:.:1:1:.:.:.:-0.0152891
chr13	41202493	.	T	TACAC	3332.72	REJECT	SOMATIC;NS=2;DP=222;DPB=365.949;AC=1;AN=3;AF=0.0;RO=47;AO=16;PRO=70.0;PAO=69.6667;QR=1745;QA=504;PQR=2429.75;PQA=2403.75;SRF=30;SRR=17;SAF=11;SAR=5;SRP=10.8184;SAP=7.89611;AB=0.0720721;ABP=356.119;RUN=1;RPP=5.18177;RPPR=6.75262;RPL=10.0;RPR=6.0;EPP=3.55317;EPPR=3.42611;DPRA=0.0;ODDS=47.042;GTI=0;TYPE=ins;CIGAR=1M4I38M;NUMALT=3;MEANALT=15.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:132.966:53:3:104:7:241:-111.302,-70.4378,-74.691:7:17:42:.:.:.:.:.:.:-0.480745	./1:132.966:169:44:1641:9:263:-232.155,-208.008,-346.076:9:6:140:.:.:1:.:.:.:-0.0152891
chr13	41202493	.	T	TACACAC	3332.72	REJECT	NS=2;DP=222;DPB=365.949;AC=2;AN=2;AF=0.25;RO=47;AO=22;PRO=70.0;PAO=69.6667;QR=1745;QA=772;PQR=2429.75;PQA=2403.75;SRF=30;SRR=17;SAF=12;SAR=10;SRP=10.8184;SAP=3.40511;AB=0.0990991;ABP=312.924;RUN=1;RPP=9.32731;RPPR=6.75262;RPL=7.0;RPR=15.0;EPP=3.0103;EPPR=3.42611;DPRA=0.0;ODDS=47.042;GTI=0;TYPE=ins;CIGAR=1M6I38M;NUMALT=3;MEANALT=15.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.782;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.286;QD=13.47;ReadPosRankSum=-0.591;SOR=0.693;ClippingRankSum=-1.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.983:52:3:104:14:502:-111.302,-48.8377,-51.1844:18:38:46:7,22:1196,458,972:1:.:1:.:.:.:-0.480745	./1:132.966:169:44:1641:8:270:-232.155,-207.107,-345.426:8:6:140:.:.:.:.:1:.:.:.:-0.0152891
chr13	41202948	.	T	C	9365.285	REJECT	NS=2;DP=389;DPB=443.0;AC=3;AN=4;AF=0.75;RO=116;AO=327;PRO=0.0;PAO=0.0;QR=4466;QA=12565;PQR=0.0;PQA=0.0;SRF=67;SRR=49;SAF=198;SAR=129;SRP=9.07545;SAP=34.6261;AB=0.655786;ABP=74.0503;RUN=1;RPP=3.07007;RPPR=6.67934;RPL=165.0;RPR=162.0;EPP=27.7199;EPPR=13.7928;DPRA=0.0;ODDS=67.1083;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.991379;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.159;Dels=0.0;FS=0.6965;HaplotypeScore=5.8265;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.009;QD=27.995;ReadPosRankSum=-1.076;SOR=1.035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:106:4057:-365.142,-28.7188,0.0:105:100:105:0,104:4305,312,0:1:.:1:.:.:.:-0.480745	0/1:129.501:336:116:4466:221:8508:-673.939,0.0,-310.42:220:65:336:116,220:8484,0,4000:.:1:1:.:.:.:-0.0152891
chr13	41203281	.	C	T	1254.12	REJECT	SOMATIC;NS=2;DP=151;DPB=211.2;AC=1;AN=3;AF=0.0;RO=28;AO=8;PRO=27.3667;PAO=3.45;QR=1020;QA=113;PQR=988.55;PQA=122.3;SRF=10;SRR=18;SAF=0;SAR=8;SRP=7.97367;SAP=20.3821;AB=0.0529801;ABP=265.097;RUN=1;RPP=7.35324;RPPR=22.8638;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=3.0103;DPRA=0.0;ODDS=24.4928;GTI=0;TYPE=snp;CIGAR=1X19M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:106.362:40:3:107:2:28:-55.2209,-71.4181,-275.507:2:6:36:.:.:.:.:.:.:-0.480745	./1:134.76:111:25:913:6:85:-82.3011,-140.433,-954.935:6:6:94:.:.:1:.:.:.:-0.0152891
chr13	41203281	.	C	CT	976.925	REJECT	NS=2;DP=151;DPB=211.2;AC=2;AN=3;AF=0.5;RO=28;AO=52;PRO=27.3667;PAO=28.6167;QR=1020;QA=1333;PQR=988.55;PQA=1024.05;SRF=10;SRR=18;SAF=18;SAR=34;SRP=7.97367;SAP=13.7006;AB=0.344371;ABP=34.7771;RUN=1;RPP=27.0635;RPPR=22.8638;RPL=38.0;RPR=14.0;EPP=3.0103;EPPR=3.0103;DPRA=0.0;ODDS=24.4928;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=59.6154;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.1685;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.202;QD=8.365;RPA=15,16;RU=T;ReadPosRankSum=-1.2025;SOR=0.755;STR;ClippingRankSum=-0.751	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:76.181:40:3:107:17:424:-55.2209,-14.0589,-17.1877:26:67:38:5,35:667,46,0:1:.:1:.:.:.:-0.480745	0/1:116.88:145:25:913:35:909:-82.3011,0.0,-70.6089:43:41:103:60,52:676,0,694:.:1:1:.:.:.:-0.0152891
chr13	41203281	.	C	TT	1254.12	REJECT	SOMATIC;NS=2;DP=151;DPB=211.2;AC=1;AN=3;AF=0.0;RO=28;AO=5;PRO=27.3667;PAO=3.45;QR=1020;QA=71;PQR=988.55;PQA=122.3;SRF=10;SRR=18;SAF=0;SAR=5;SRP=7.97367;SAP=13.8677;AB=0.0331126;ABP=288.911;RUN=1;RPP=13.8677;RPPR=22.8638;RPL=0.0;RPR=5.0;EPP=13.8677;EPPR=3.0103;DPRA=0.0;ODDS=24.4928;GTI=0;TYPE=complex;CIGAR=1X1I19M;NUMALT=5;MEANALT=12.5;LEN=21;MQM=70.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:106.362:40:3:107:3:43:-55.2209,-70.3371,-274.53:3:8:36:.:.:.:.:.:.:-0.480745	./1:134.76:111:25:913:2:28:-82.3011,-144.481,-959.646:2:2:94:.:.:1:.:.:.:-0.0152891
chr13	41203281	.	C	CTT	1254.12	REJECT	NS=2;DP=151;DPB=211.2;AC=2;AN=2;AF=0.25;RO=28;AO=18;PRO=27.3667;PAO=26.6167;QR=1020;QA=480;PQR=988.55;PQA=949.05;SRF=10;SRR=18;SAF=4;SAR=14;SRP=7.97367;SAP=15.074;AB=0.119205;ABP=193.194;RUN=1;RPP=10.7311;RPPR=22.8638;RPL=13.0;RPR=5.0;EPP=4.9405;EPPR=3.0103;DPRA=0.0;ODDS=24.4928;GTI=0;TYPE=ins;CIGAR=1M2I19M;NUMALT=5;MEANALT=12.5;LEN=2;MQM=57.3333;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:106.362:40:3:107:9:274:-55.2209,-31.6327,-37.4015:9:25:36:.:.:1:.:.:.:-0.480745	./1:134.76:111:25:913:9:206:-82.3011,-56.2281,-133.754:9:10:94:.:.:1:.:.:.:-0.0152891
chr13	41203281	.	CT	C	1254.12	REJECT	SOMATIC;NS=2;DP=151;DPB=211.2;AC=1;AN=3;AF=0.0;RO=28;AO=19;PRO=27.3667;PAO=20.5;QR=1020;QA=551;PQR=988.55;PQA=728.75;SRF=10;SRR=18;SAF=4;SAR=15;SRP=7.97367;SAP=16.8392;AB=0.125828;ABP=186.636;RUN=1;RPP=5.8675;RPPR=22.8638;RPL=12.0;RPR=7.0;EPP=5.8675;EPPR=3.0103;DPRA=0.0;ODDS=24.4928;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.2857;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:106.362:40:3:107:2:71:-55.2209,-53.4368,-99.6868:2:6:36:.:.:.:.:.:.:-0.480745	./1:134.76:111:25:913:17:480:-82.3011,-60.0629,-269.73:17:18:94:.:.:1:.:.:.:-0.0152891
chr13	41203905	.	C	T	9602.535	REJECT	NS=2;DP=430;DPB=491.0;AC=3;AN=4;AF=0.75;RO=147;AO=344;PRO=0.0;PAO=0.0;QR=5577;QA=13184;PQR=0.0;PQA=0.0;SRF=82;SRR=65;SAF=197;SAR=147;SRP=7.27939;SAP=18.7913;AB=0.602703;ABP=36.9087;RUN=1;RPP=10.3075;RPPR=8.34296;RPL=155.0;RPR=189.0;EPP=11.1912;EPPR=7.27939;DPRA=0.0;ODDS=76.1623;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.843;MQMR=60.0;PAIRED=0.991279;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=4.174;Dels=0.0;FS=0.0;HaplotypeScore=9.825;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.285;QD=27.76;ReadPosRankSum=0.66;SOR=0.9435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:119:0:0:121:4571:-410.311,-32.6509,0.0:119:100:119:0,117:4866,351,0:1:.:1:.:.:.:-0.480745	0/1:129.501:369:147:5577:223:8613:-674.423,0.0,-401.42:222:60:369:147,222:8477,0,5141:.:1:1:.:.:.:-0.0152891
chr13	41204242	.	A	G	10110.035	REJECT	NS=2;DP=408;DPB=471.0;AC=3;AN=4;AF=0.75;RO=112;AO=359;PRO=0.0;PAO=0.0;QR=4221;QA=13710;PQR=0.0;PQA=0.0;SRF=58;SRR=54;SAF=173;SAR=186;SRP=3.32051;SAP=4.03253;AB=0.676301;ABP=96.4213;RUN=1;RPP=3.01635;RPPR=3.0103;RPL=180.0;RPR=179.0;EPP=8.09723;EPPR=3.32051;DPRA=0.0;ODDS=78.9389;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994429;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.324;Dels=0.0;FS=1.2545;HaplotypeScore=7.8283;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.195;QD=27.195;ReadPosRankSum=-0.056;SOR=0.702	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:124:0:0:125:4793:-431.319,-33.8567,0.0:124:100:124:0,123:4951,369,0:1:.:1:.:.:.:-0.480745	0/1:129.501:345:112:4221:234:8917:-708.721,0.0,-285.983:233:68:345:112,233:8914,0,3690:.:1:1:.:.:.:-0.0152891
chr13	41204788	.	C	CA	1092.37	PASS	SOMATIC;NS=2;DP=240;DPB=306.64;AC=2;AN=2;AF=0.0;RO=130;AO=24;PRO=41.25;PAO=30.25;QR=4664;QA=774;PQR=1395.67;PQA=1043.67;SRF=82;SRR=48;SAF=14;SAR=10;SRP=22.3197;SAP=4.45795;AB=0.1;ABP=336.548;RUN=1;RPP=12.0581;RPPR=59.2013;RPL=7.0;RPR=17.0;EPP=3.37221;EPPR=6.28421;DPRA=0.0;ODDS=57.1542;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.355:60:29:1010:1:40:-61.0904,-66.435,-157.01:1:2:56:.:.:1:.:.:.:-0.480745	./1:133.355:180:101:3654:23:734:-58.0736,-25.2761,-344.402:23:15:157:.:.:1:.:.:.:-0.0152891
chr13	41204788	.	CA	C	807.05	REJECT	NS=2;DP=222;DPB=306.64;AC=2;AN=4;AF=0.5;RO=130;AO=52;PRO=41.25;PAO=33.25;QR=4664;QA=1725;PQR=1395.67;PQA=1160.67;SRF=82;SRR=48;SAF=35;SAR=17;SRP=22.3197;SAP=16.5402;AB=0.216667;ABP=170.358;RUN=1;RPP=35.7494;RPPR=59.2013;RPL=12.0;RPR=40.0;EPP=3.17734;EPPR=6.28421;DPRA=0.0;ODDS=57.1542;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=13.5;LEN=1;MQM=60.3846;MQMR=60.0;PAIRED=0.980769;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.6665;FS=0.792;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.1205;QD=4.6;RPA=12,11;RU=A;ReadPosRankSum=0.69;SOR=0.575;STR;ClippingRankSum=0.55	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.1775:61:29:1010:23:748:-61.0904,0.0,-89.2512:26:44:59:33,30:559,0,642:1:.:1:.:.:.:-0.480745	0/1:116.1775:192:101:3654:29:977:-58.0736,0.0,-335.626:33:19:175:155,38:395,0,3097:.:1:1:.:.:.:-0.0152891
chr13	41204788	.	CAA	C	1092.37	REJECT	NS=2;DP=240;DPB=306.64;AC=2;AN=2;AF=0.0;RO=130;AO=7;PRO=41.25;PAO=26.25;QR=4664;QA=236;PQR=1395.67;PQA=900.0;SRF=82;SRR=48;SAF=6;SAR=1;SRP=22.3197;SAP=10.7656;AB=0.0291667;ABP=465.136;RUN=1;RPP=5.80219;RPPR=59.2013;RPL=2.0;RPR=5.0;EPP=3.32051;EPPR=6.28421;DPRA=0.0;ODDS=57.1542;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=13.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.355:60:29:1010:3:116:-61.0904,-61.49,-166.377:3:5:56:.:.:1:.:.:.:-0.480745	./1:133.355:180:101:3654:4:120:-58.0736,-81.4097,-441.597:4:3:157:.:.:1:.:.:.:-0.0152891
chr13	41205289	.	G	A	4082.15	PASS	SOMATIC;NS=2;DP=485;DPB=485.0;AC=1;AN=3;AF=0.25;RO=333;AO=151;PRO=0.0;PAO=0.0;QR=12706;QA=5721;PQR=0.0;PQA=0.0;SRF=184;SRR=149;SAF=79;SAR=72;SRP=10.9984;SAP=3.71495;AB=0.405914;ABP=31.613;RUN=1;RPP=7.1663;RPPR=7.08589;RPL=84.0;RPR=67.0;EPP=3.13973;EPPR=12.9286;DPRA=3.29204;ODDS=71.5045;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993377;PAIREDR=0.996997;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.354;Dels=0.0;FS=2.809;HaplotypeScore=5.93;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.968;QD=14.15;ReadPosRankSum=-0.117;SOR=0.549	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:113:4355:0:0:0.0,-30.628,-391.961:0:0:111:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.480745	0/1:129.501:371:220:8351:151:5721:-414.152,0.0,-650.62:150:41:370:213,147:38.0:0.412:2:5279,0,8170:.:1:1:.:.:1:-0.0152891
chr13	41206298	.	C	T	2531.295	REJECT	NS=2;DP=130;DPB=148.0;AC=3;AN=4;AF=0.75;RO=51;AO=97;PRO=0.0;PAO=0.0;QR=1871;QA=3606;PQR=0.0;PQA=0.0;SRF=43;SRR=8;SAF=77;SAR=20;SRP=55.1682;SAP=75.7434;AB=0.552632;ABP=5.75321;RUN=1;RPP=14.8527;RPPR=3.05288;RPL=37.0;RPR=60.0;EPP=24.5235;EPPR=15.3153;DPRA=0.0;ODDS=22.2069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7423;MQMR=59.3529;PAIRED=0.979381;PAIREDR=0.980392;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.87;Dels=0.0;FS=0.9995;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.75;MQ=59.65;MQRankSum=-0.321;QD=25.89;ReadPosRankSum=1.234;SOR=1.453	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:95.7216:33:0:0:34:1239:-111.49,-9.21837,0.0:33:100:33:0,32:1301,95,0:1:.:1:.:.:.:-0.480745	0/1:119.096:113:51:1871:63:2367:-182.167,0.0,-137.329:63:55:113:50,63:2316,0,1700:.:1:1:.:.:.:-0.0152891
chr13	41206612	.	T	C	635.792	REJECT	NS=2;DP=144;DPB=172.0;AC=2;AN=4;AF=0.5;RO=136;AO=36;PRO=0.0;PAO=0.0;QR=5195;QA=1324;PQR=0.0;PQA=0.0;SRF=16;SRR=120;SAF=6;SAR=30;SRP=175.706;SAP=37.7539;AB=0.209302;ABP=129.259;RUN=1;RPP=5.18177;RPPR=7.09778;RPL=21.0;RPR=15.0;EPP=5.18177;EPPR=7.09778;DPRA=0.0;ODDS=12.3212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985294;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.393;Dels=0.0;FS=5.2865;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7445;QD=7.93;ReadPosRankSum=0.4635;SOR=0.32;ClippingRankSum=0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:53:30:1119:25:887:-64.9958,0.0,-85.9432:24:46:53:27,24:803,0,990:1:.:1:.:.:.:-0.480745	0/1:76.2551:117:106:4076:11:437:-7.61474,0.0,-335.131:11:9:117:106,11:140,0,4212:.:1:1:.:.:.:-0.0152891
chr13	41208607	.	A	C	5424.19	REJECT	NS=2;DP=363;DPB=409.0;AC=2;AN=4;AF=0.5;RO=210;AO=199;PRO=0.0;PAO=0.0;QR=8160;QA=7375;PQR=0.0;PQA=0.0;SRF=74;SRR=136;SAF=75;SAR=124;SRP=42.7586;SAP=29.2098;AB=0.486553;ABP=3.65272;RUN=1;RPP=16.3774;RPPR=16.4114;RPL=117.0;RPR=82.0;EPP=5.46548;EPPR=5.65743;DPRA=0.0;ODDS=180.322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979899;PAIREDR=0.995238;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.954;Dels=0.0;FS=4.162;HaplotypeScore=5.8879;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.19;QD=14.765;ReadPosRankSum=0.0145;SOR=0.8635;ClippingRankSum=0.478	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:58:2243:31:1156:-79.9537,0.0,-177.802:31:35:89:58,31:1021,0,2060:1:.:1:.:.:.:-0.480745	0/1:129.501:319:152:5917:168:6219:-472.725,0.0,-445.56:167:52:319:152,166:5872,0,5703:.:1:1:.:.:.:-0.0152891
chr13	41208820	.	C	CTT	7.505	REJECT	NS=2;DP=47;DPB=66.35;AC=2;AN=2;AF=0.0;RO=26;AO=3;PRO=13.9167;PAO=8.91667;QR=887;QA=42;PQR=472.333;PQA=303.333;SRF=6;SRR=20;SAF=0;SAR=3;SRP=19.3799;SAP=9.52472;AB=0.0638298;ABP=80.6751;RUN=1;RPP=3.73412;RPPR=3.34437;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=6.01695;DPRA=0.0;ODDS=1.06705;GTI=1;TYPE=ins;CIGAR=1M2I19M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=59.8462;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.951347:8:4:118:1:14:-1.90793,-1.99001,-11.3219:1:14:7:.:.:1:.:.:.:-0.480745	./1:6.9557:39:22:769:2:28:-3.1236,-8.46572,-85.1645:2:6:31:.:.:1:.:.:.:-0.0152891
chr13	41208820	.	CT	C	7.505	REJECT	NS=2;DP=47;DPB=66.35;AC=2;AN=4;AF=0.5;RO=26;AO=6;PRO=13.9167;PAO=8.41667;QR=887;QA=173;PQR=472.333;PQA=284.333;SRF=6;SRR=20;SAF=1;SAR=5;SRP=19.3799;SAP=8.80089;AB=0.12766;ABP=59.6072;RUN=1;RPP=8.80089;RPPR=3.34437;RPL=5.0;RPR=1.0;EPP=4.45795;EPPR=6.01695;DPRA=0.0;ODDS=1.06705;GTI=1;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.8462;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.951347:8:4:118:1:36:-1.90793,0.0,-9.31603:1:14:7:.:.:1:.:.:.:-0.480745	0/1:6.9557:39:22:769:5:137:-3.1236,0.0,-82.1897:5:16:31:.:.:1:.:.:.:-0.0152891
chr13	41208820	.	CTT	C	7.505	REJECT	NS=2;DP=47;DPB=66.35;AC=2;AN=2;AF=0.0;RO=26;AO=3;PRO=13.9167;PAO=8.75;QR=887;QA=65;PQR=472.333;PQA=294.0;SRF=6;SRR=20;SAF=1;SAR=2;SRP=19.3799;SAP=3.73412;AB=0.0638298;ABP=80.6751;RUN=1;RPP=3.73412;RPPR=3.34437;RPL=2.0;RPR=1.0;EPP=9.52472;EPPR=6.01695;DPRA=0.0;ODDS=1.06705;GTI=1;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=53.3333;MQMR=59.8462;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.951347:8:4:118:1:36:-1.90793,0.0,-9.31603:1:14:7:.:.:1:.:.:.:-0.480745	./1:6.9557:39:22:769:2:29:-3.1236,-7.66437,-108.631:2:6:31:.:.:1:.:.:.:-0.0152891
chr13	41209338	.	C	CA	7602.315	REJECT	NS=2;DP=381;DPB=508.214;AC=3;AN=4;AF=0.75;RO=114;AO=297;PRO=56.0;PAO=70.0;QR=4346;QA=11083;PQR=1941.0;PQA=2450.0;SRF=54;SRR=60;SAF=148;SAR=149;SRP=3.69603;SAP=3.01761;AB=0.606667;ABP=32.6581;RUN=1;RPP=3.89497;RPPR=3.31507;RPL=143.0;RPR=154.0;EPP=3.0761;EPPR=10.6295;DPRA=0.0;ODDS=76.3251;GTI=0;TYPE=ins;CIGAR=1M1I13M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.1684;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.973684;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.148;FS=0.2055;MLEAC=1;MLEAF=0.75;MQ=60.5;MQRankSum=1.27;QD=21.31;RPA=7,8;RU=A;ReadPosRankSum=0.977;SOR=0.7015;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.264:119:0:0:115:4279:-405.072,-32.7216,0.0:119:100:119:0,123:3741,374,0:1:.:1:.:.:.:-0.480745	0/1:117.264:323:114:4346:182:6804:-580.493,0.0,-333.711:190:61:310:126,199:5446,0,3214:.:1:1:.:.:.:-0.0152891
chr13	41209883	.	G	A	12185.95	REJECT	NS=2;DP=318;DPB=364.0;AC=4;AN=4;AF=1.0;RO=0;AO=364;PRO=0.0;PAO=0.0;QR=0;QA=14079;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=207;SRP=0.0;SAP=17.9243;AB=0.0;ABP=0.0;RUN=1;RPP=21.7184;RPPR=0.0;RPL=210.0;RPR=154.0;EPP=3.22506;EPPR=0.0;DPRA=0.0;ODDS=61.7428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997253;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9661;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.32;SOR=0.9705	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.785:90:0:0:92:3537:-318.411,-24.9395,0.0:90:100:90:0,89:3657,267,0:1:.:1:.:.:.:-0.480745	1/1:127.785:272:0:0:272:10542:-948.222,-73.6766,0.0:272:100:272:0,272:11809,813,0:.:1:1:.:.:.:-0.0152891
chr13	41210041	.	G	A	3951.3500000000004	REJECT	NS=2;DP=175;DPB=196.0;AC=3;AN=4;AF=0.75;RO=57;AO=139;PRO=0.0;PAO=0.0;QR=2166;QA=5323;PQR=0.0;PQA=0.0;SRF=12;SRR=45;SAF=36;SAR=103;SRP=44.4969;SAP=73.1379;AB=0.62987;ABP=25.5711;RUN=1;RPP=18.0231;RPPR=23.1631;RPL=85.0;RPR=54.0;EPP=18.0231;EPPR=7.61992;DPRA=0.0;ODDS=27.2428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992806;PAIREDR=0.947368;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.528;Dels=0.0;FS=2.913;HaplotypeScore=2.913;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.165;QD=26.575;ReadPosRankSum=-0.662;SOR=1.65	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:108.6375:41:0:0:42:1599:-144.164,-11.4054,0.0:41:100:41:0,40:1676,120,0:1:.:1:.:.:.:-0.480745	0/1:118.875:154:57:2166:97:3724:-293.377,0.0,-153.165:97:63:154:57,97:3712,0,1944:.:1:1:.:.:.:-0.0152891
chr13	41213098	.	A	G	3080.45	REJECT	NS=2;DP=153;DPB=181.0;AC=3;AN=4;AF=0.75;RO=57;AO=124;PRO=0.0;PAO=0.0;QR=2151;QA=4715;PQR=0.0;PQA=0.0;SRF=9;SRR=48;SAF=12;SAR=112;SRP=60.9543;SAP=178.129;AB=0.544;ABP=5.11229;RUN=1;RPP=4.13106;RPPR=6.09608;RPL=66.0;RPR=58.0;EPP=3.29049;EPPR=3.0484;DPRA=0.0;ODDS=35.9373;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.574;Dels=0.0;FS=0.4855;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.364;QD=25.6;ReadPosRankSum=-0.196;SOR=3.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.6975:55:0:0:56:2126:-191.526,-15.1814,0.0:55:100:55:0,55:2334,165,0:1:.:1:.:.:.:-0.480745	0/1:120.075:125:57:2151:68:2589:-199.119,0.0,-159.714:68:54:125:57,68:2537,0,2047:.:1:1:.:.:.:-0.0152891
chr13	41213337	.	T	TA	200.871	REJECT	NS=2;DP=208;DPB=266.682;AC=2;AN=4;AF=0.5;RO=146;AO=24;PRO=46.5;PAO=34.5;QR=5364;QA=866;PQR=1625.0;PQA=1181.0;SRF=106;SRR=40;SAF=20;SAR=4;SRP=67.7975;SAP=26.1727;AB=0.115385;ABP=270.268;RUN=1;RPP=16.0391;RPPR=60.1825;RPL=6.0;RPR=18.0;EPP=4.45795;EPPR=7.82918;DPRA=0.0;ODDS=9.95694;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993151;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:43.2427:53:41:1518:6:219:-5.62098,0.0,-138.92:6:13:48:.:.:1:.:.:.:-0.480745	0/1:141.126:155:105:3846:18:647:-22.9933,0.0,-334.541:18:14:133:.:.:1:.:.:.:-0.0152891
chr13	41213337	.	TA	T	200.871	REJECT	NS=2;DP=208;DPB=266.682;AC=2;AN=2;AF=0.0;RO=146;AO=11;PRO=46.5;PAO=34.0;QR=5364;QA=372;PQR=1625.0;PQA=1165.0;SRF=106;SRR=40;SAF=8;SAR=3;SRP=67.7975;SAP=7.94546;AB=0.0528846;ABP=364.185;RUN=1;RPP=3.20771;RPPR=60.1825;RPL=6.0;RPR=5.0;EPP=4.78696;EPPR=7.82918;DPRA=0.0;ODDS=9.95694;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993151;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.2427:53:41:1518:1:39:-5.62098,-15.3985,-160.898:1:2:48:.:.:1:.:.:.:-0.480745	./1:141.126:155:105:3846:10:333:-22.9933,-23.9346,-372.884:10:8:133:.:.:1:.:.:.:-0.0152891
chr13	41214934	.	GTT	G	2579.73	REJECT	SOMATIC;NS=2;DP=169;DPB=184.5;AC=1;AN=3;AF=0.0;RO=54;AO=24;PRO=7.33333;PAO=5.33333;QR=2069;QA=898;PQR=253.333;PQA=190.833;SRF=4;SRR=50;SAF=1;SAR=23;SRP=88.0998;SAP=46.8017;AB=0.166667;ABP=124.613;RUN=1;RPP=12.0581;RPPR=16.0391;RPL=7.0;RPR=17.0;EPP=16.0391;EPPR=7.03155;DPRA=0.0;ODDS=14.0471;GTI=0;TYPE=del;CIGAR=1M2D3M;NUMALT=2;MEANALT=2.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:61.0059:43:0:0:3:95:-137.98,-126.091,-142.228:3:7:43:.:.:.:.:.:.:-0.480745	./1:160.002:126:54:2069:21:803:-144.601,-87.6328,-268.263:21:17:125:.:.:1:.:.:.:-0.0152891
chr13	41214936	.	T	TG	2579.73	REJECT	NS=2;DP=149;DPB=184.5;AC=2;AN=4;AF=0.625;RO=54;AO=90;PRO=7.33333;PAO=8.33333;QR=2069;QA=3307;PQR=253.333;PQA=290.833;SRF=4;SRR=50;SAF=8;SAR=82;SRP=88.0998;SAP=135.132;AB=0.396825;ABP=14.6604;RUN=1;RPP=24.725;RPPR=16.0391;RPL=60.0;RPR=30.0;EPP=24.725;EPPR=7.03155;DPRA=0.0;ODDS=14.0471;GTI=0;TYPE=ins;CIGAR=3M1I3M;NUMALT=2;MEANALT=2.5;LEN=1;MQM=60.9444;MQMR=60.0;PAIRED=0.988889;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=41214936;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.0765;FS=3.119;MLEAC=1;MLEAF=0.5;MQ=61.13;MQRankSum=-0.2495;QD=21.53;ReadPosRankSum=-0.1175;SOR=1.514;ClippingRankSum=-1.149	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:42.00295:39:0:0:40:1461:-137.98,-11.3788,0.0:32:91:43:22,31:1177,0,23:1:.:1:1:.:.:-0.480745	0/1:129.501:117:54:2069:50:1846:-144.601,0.0,-157.488:61:48:126:55,72:2671,0,2075:.:1:1:.:.:.:-0.0152891
chr13	41215256	.	A	T	7593.175	REJECT	NS=2;DP=326;DPB=367.0;AC=3;AN=4;AF=0.75;RO=100;AO=267;PRO=0.0;PAO=0.0;QR=3875;QA=10071;PQR=0.0;PQA=0.0;SRF=50;SRR=50;SAF=161;SAR=106;SRP=3.0103;SAP=27.6122;AB=0.65035;ABP=59.1649;RUN=1;RPP=3.40881;RPPR=4.40004;RPL=130.0;RPR=137.0;EPP=3.0835;EPPR=11.6962;DPRA=0.0;ODDS=51.4989;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996255;PAIREDR=0.99;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.933;Dels=0.0;FS=3.847;HaplotypeScore=7.8781;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.307;QD=25.695;ReadPosRankSum=0.122;SOR=1.2135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:81:3044:-274.064,-21.9397,0.0:79:100:79:0,78:3298,234,0:1:.:1:.:.:.:-0.480745	0/1:129.501:285:100:3875:186:7027:-554.619,0.0,-271.108:186:65:285:99,186:7011,0,3447:.:1:1:.:.:.:-0.0152891
chr13	41215696	.	C	T	7214.245000000001	REJECT	NS=2;DP=329;DPB=369.0;AC=3;AN=4;AF=0.75;RO=114;AO=255;PRO=0.0;PAO=0.0;QR=4424;QA=9700;PQR=0.0;PQA=0.0;SRF=43;SRR=71;SAF=100;SAR=155;SRP=17.9439;SAP=28.7699;AB=0.608247;ABP=32.6274;RUN=1;RPP=3.08694;RPPR=4.22937;RPL=126.0;RPR=129.0;EPP=3.70006;EPPR=3.69603;DPRA=0.0;ODDS=49.6239;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988235;PAIREDR=0.991228;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.105;Dels=0.0;FS=0.0;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.223;QD=25.56;ReadPosRankSum=-0.943;SOR=0.875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:76:0:0:78:2977:-268.021,-21.1254,0.0:76:100:76:0,75:3217,225,0:1:.:1:.:.:.:-0.480745	0/1:129.501:290:114:4424:177:6723:-525.894,0.0,-319.137:176:61:290:113,176:6602,0,4066:.:1:1:.:.:.:-0.0152891
chr13	41215802	.	G	T	4440.185	REJECT	NS=2;DP=228;DPB=261.0;AC=3;AN=4;AF=0.75;RO=93;AO=168;PRO=0.0;PAO=0.0;QR=3428;QA=6373;PQR=0.0;PQA=0.0;SRF=32;SRR=61;SAF=67;SAR=101;SRP=22.6469;SAP=17.9521;AB=0.523077;ABP=3.9123;RUN=1;RPP=14.6432;RPPR=20.0318;RPL=99.0;RPR=69.0;EPP=3.83753;EPPR=4.15441;DPRA=0.0;ODDS=42.162;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982143;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.513;Dels=0.0;FS=3.091;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.428;QD=25.755;ReadPosRankSum=0.951;SOR=0.95	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.136:65:0:0:66:2472:-222.632,-17.8847,0.0:65:100:65:0,64:2567,192,0:1:.:1:.:.:.:-0.480745	0/1:119.136:195:93:3428:102:3901:-298.178,0.0,-255.601:102:52:195:93,102:3783,0,3184:.:1:1:.:.:.:-0.0152891
chr13	41215972	.	A	G	2078.535	REJECT	NS=2;DP=96;DPB=110.0;AC=3;AN=4;AF=0.75;RO=30;AO=80;PRO=0.0;PAO=0.0;QR=1135;QA=2937;PQR=0.0;PQA=0.0;SRF=14;SRR=16;SAF=42;SAR=38;SRP=3.29983;SAP=3.44459;AB=0.638554;ABP=16.8502;RUN=1;RPP=3.44459;RPPR=7.64277;RPL=42.0;RPR=38.0;EPP=76.4061;EPPR=21.5402;DPRA=0.0;ODDS=17.86;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.925;MQMR=60.0;PAIRED=0.9875;PAIREDR=0.966667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.436;Dels=0.0;FS=0.0;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.75;MQ=59.895;MQRankSum=0.029;QD=24.61;ReadPosRankSum=0.359;SOR=1.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:79.28245:27:0:0:27:1000:-90.2771,-7.33052,0.0:27:100:27:0,27:1107,81,0:1:.:1:.:.:.:-0.480745	0/1:120.644:82:30:1135:53:1937:-151.92,0.0,-79.7152:53:64:82:29,53:1893,0,979:.:1:1:.:.:.:-0.0152891
chr13	41216052	.	G	A	3299.33	REJECT	NS=2;DP=139;DPB=157.0;AC=3;AN=4;AF=0.75;RO=39;AO=117;PRO=0.0;PAO=0.0;QR=1459;QA=4440;PQR=0.0;PQA=0.0;SRF=30;SRR=9;SAF=100;SAR=17;SRP=27.5646;SAP=130.867;AB=0.669421;ABP=33.1776;RUN=1;RPP=3.47429;RPPR=7.52028;RPL=56.0;RPR=61.0;EPP=3.02886;EPPR=3.51141;DPRA=0.0;ODDS=23.4537;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.7949;PAIRED=0.982906;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.855;Dels=0.0;FS=1.084;HaplotypeScore=7.79;MLEAC=1;MLEAF=0.75;MQ=59.97;MQRankSum=-0.039;QD=29.195;ReadPosRankSum=0.504;SOR=2.468	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:100.429:35:0:0:36:1321:-119.133,-9.75983,0.0:35:100:35:0,34:1422,102,0:1:.:1:.:.:.:-0.480745	0/1:122.8935:121:39:1459:81:3119:-248.188,0.0,-98.7839:81:68:120:39,81:3147,0,1266:.:1:1:.:.:.:-0.0152891
chr13	41216437	.	C	A	8603.970000000001	REJECT	NS=2;DP=387;DPB=446.0;AC=3;AN=4;AF=0.75;RO=127;AO=318;PRO=0.0;PAO=0.0;QR=4859;QA=11922;PQR=0.0;PQA=0.0;SRF=69;SRR=58;SAF=167;SAR=151;SRP=5.07918;SAP=4.7584;AB=0.612121;ABP=39.0436;RUN=1;RPP=3.69315;RPPR=3.16418;RPL=154.0;RPR=164.0;EPP=5.74171;EPPR=3.0274;DPRA=0.0;ODDS=73.2696;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987421;PAIREDR=0.992126;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.009;Dels=0.0;FS=2.185;HaplotypeScore=7.7899;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.215;QD=25.395;ReadPosRankSum=-1.216;SOR=0.8155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.485:116:0:0:116:4281:-385.282,-31.3946,0.0:116:100:116:0,116:4637,347,0:1:.:1:.:.:.:-0.480745	0/1:123.485:329:127:4859:202:7641:-598.174,0.0,-347.958:201:61:328:127,200:7466,0,4475:.:1:1:.:.:.:-0.0152891
chr13	41216534	.	C	T	9319.835	REJECT	NS=2;DP=401;DPB=461.0;AC=3;AN=4;AF=0.75;RO=128;AO=333;PRO=0.0;PAO=0.0;QR=4805;QA=12766;PQR=0.0;PQA=0.0;SRF=59;SRR=69;SAF=138;SAR=195;SRP=4.70676;SAP=24.1968;AB=0.627907;ABP=51.8937;RUN=1;RPP=6.45988;RPPR=4.09604;RPL=178.0;RPR=155.0;EPP=3.17332;EPPR=3.62103;DPRA=0.0;ODDS=73.9521;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993994;PAIREDR=0.984375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.996;Dels=0.0;FS=1.8395;HaplotypeScore=2.9568;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.323;QD=25.465;ReadPosRankSum=-0.747;SOR=1.0265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.868:116:0:0:117:4471:-402.363,-31.691,0.0:116:100:116:0,116:4992,349,0:1:.:1:.:.:.:-0.480745	0/1:118.868:342:128:4805:216:8295:-652.96,0.0,-339.028:215:63:342:126,215:8199,0,4213:.:1:1:.:.:.:-0.0152891
chr13	41216646	.	T	C	8888.535	REJECT	NS=2;DP=382;DPB=448.0;AC=3;AN=4;AF=0.75;RO=124;AO=324;PRO=0.0;PAO=0.0;QR=4763;QA=12506;PQR=0.0;PQA=0.0;SRF=58;SRR=66;SAF=169;SAR=155;SRP=4.13106;SAP=4.32391;AB=0.610063;ABP=36.4701;RUN=1;RPP=3.9754;RPPR=3.29049;RPL=156.0;RPR=168.0;EPP=48.0751;EPPR=10.015;DPRA=0.0;ODDS=82.0805;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996914;PAIREDR=0.983871;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.43;Dels=0.0;FS=2.24;HaplotypeScore=4.9322;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.124;QD=28.54;ReadPosRankSum=-0.985;SOR=0.72	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:128:0:0:130:4973:-447.512,-35.2211,0.0:128:100:128:0,127:5063,381,0:1:.:1:.:.:.:-0.480745	0/1:129.501:317:124:4763:194:7533:-591.425,0.0,-342.25:194:61:317:123,194:7523,0,4304:.:1:1:.:.:.:-0.0152891
chr13	41216831	.	A	G	4400.495	REJECT	NS=2;DP=182;DPB=208.0;AC=3;AN=4;AF=0.75;RO=49;AO=159;PRO=0.0;PAO=0.0;QR=1916;QA=6004;PQR=0.0;PQA=0.0;SRF=5;SRR=44;SAF=26;SAR=133;SRP=70.4146;SAP=159.37;AB=0.687898;ABP=51.1561;RUN=1;RPP=3.35173;RPPR=4.11819;RPL=82.0;RPR=77.0;EPP=3.35173;EPPR=5.18177;DPRA=0.0;ODDS=32.8116;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993711;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.771;Dels=0.0;FS=1.063;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.036;QD=27.435;ReadPosRankSum=-1.491;SOR=1.509	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.4645:51:0:0:51:1919:-172.912,-13.8239,0.0:51:100:51:0,51:2132,153,0:1:.:1:.:.:.:-0.480745	0/1:120.4605:157:49:1916:108:4085:-325.024,0.0,-129.87:108:69:157:49,108:4075,0,1686:.:1:1:.:.:.:-0.0152891
chr13	41217351	.	C	T	1464.895	REJECT	NS=2;DP=80;DPB=95.0;AC=3;AN=4;AF=0.75;RO=27;AO=67;PRO=0.0;PAO=0.0;QR=956;QA=2247;PQR=0.0;PQA=0.0;SRF=12;SRR=15;SAF=33;SAR=34;SRP=3.73412;SAP=3.04271;AB=0.575758;ABP=6.30041;RUN=1;RPP=3.82055;RPPR=3.09072;RPL=31.0;RPR=36.0;EPP=17.3031;EPPR=3.09072;DPRA=0.0;ODDS=19.0513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=57.6119;MQMR=58.5926;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.659;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=57.77;MQRankSum=1.351;QD=26.91;ReadPosRankSum=-0.126;SOR=0.7255	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:81.3693:28:0:0:29:965:-86.3263,-7.8479,0.0:28:100:28:0,27:1010,80,0:1:.:1:.:.:.:-0.480745	0/1:120.649:66:27:956:38:1282:-97.7039,0.0,-68.2243:38:58:65:27,38:1182,0,888:.:1:1:.:.:.:-0.0152891
chr13	41217410	.	C	G	1537.6799999999998	REJECT	NS=2;DP=93;DPB=111.0;AC=3;AN=4;AF=0.75;RO=31;AO=79;PRO=0.0;PAO=0.0;QR=985;QA=2404;PQR=0.0;PQA=0.0;SRF=17;SRR=14;SAF=56;SAR=23;SRP=3.64073;SAP=32.9436;AB=0.586667;ABP=7.90335;RUN=1;RPP=4.35716;RPPR=3.64073;RPL=36.0;RPR=43.0;EPP=3.69747;EPPR=11.486;DPRA=0.0;ODDS=22.6015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.6962;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.941;Dels=0.0;FS=2.292;HaplotypeScore=7.7038;MLEAC=1;MLEAF=0.75;MQ=59.87;MQRankSum=-0.242;QD=24.34;ReadPosRankSum=0.285;SOR=1.7005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:96.0784:34:0:0:35:1050:-94.627,-9.38973,0.0:33:100:33:0,32:1109,94,0:1:.:1:.:.:.:-0.480745	0/1:129.501:75:31:985:44:1354:-101.698,0.0,-68.5031:44:59:75:31,44:1223,0,847:.:1:1:.:.:.:-0.0152891
chr13	41217484	.	G	A	104.943	REJECT	NS=2;DP=117;DPB=199.559;AC=2;AN=2;AF=0.0;RO=34;AO=14;PRO=47.7667;PAO=33.85;QR=1180;QA=360;PQR=1642.95;PQA=1165.45;SRF=27;SRR=7;SAF=0;SAR=14;SRP=28.557;SAP=33.4109;AB=0.119658;ABP=150.021;RUN=1;RPP=18.5208;RPPR=46.1843;RPL=2.0;RPR=12.0;EPP=18.5208;EPPR=19.3602;DPRA=0.0;ODDS=4.67864;GTI=0;TYPE=snp;CIGAR=1X33M;NUMALT=4;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.928571;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.2081:33:11:381:5:83:-4.18914,-11.0128,-138.517:5:22:23:.:.:1:.:.:.:-0.480745	./1:23.6886:84:23:799:9:277:-11.8195,-15.0235,-276.72:9:18:49:.:.:1:.:.:.:-0.0152891
chr13	41217484	.	G	GA	104.943	REJECT	NS=2;DP=117;DPB=199.559;AC=2;AN=2;AF=0.25;RO=34;AO=9;PRO=47.7667;PAO=41.7667;QR=1180;QA=271;PQR=1642.95;PQA=1448.95;SRF=27;SRR=7;SAF=7;SAR=2;SRP=28.557;SAP=9.04217;AB=0.0769231;ABP=184.913;RUN=1;RPP=14.8328;RPPR=46.1843;RPL=1.0;RPR=8.0;EPP=14.8328;EPPR=19.3602;DPRA=0.0;ODDS=4.67864;GTI=0;TYPE=ins;CIGAR=1M1I33M;NUMALT=4;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.3575;FS=6.478;MLEAC=1;MLEAF=0.5;MQ=58.51;MQRankSum=0.73;QD=0.955;RPA=16,17;RU=A;ReadPosRankSum=0.4655;SOR=0.4675;STR;ClippingRankSum=-1.577	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.60405:29:11:381:3:85:-4.18914,-1.41083,-42.034:5:20:24:18,7:75,0,306:1:.:1:.:.:.:-0.480745	./1:61.3443:101:23:799:6:186:-11.8195,-1.31366,-73.2279:16:19:72:70,26:157,0,873:.:1:1:.:.:.:-0.0152891
chr13	41217484	.	GA	G	104.943	REJECT	NS=2;DP=117;DPB=199.559;AC=2;AN=4;AF=0.5;RO=34;AO=10;PRO=47.7667;PAO=41.1;QR=1180;QA=304;PQR=1642.95;PQA=1428.95;SRF=27;SRR=7;SAF=7;SAR=3;SRP=28.557;SAP=6.48466;AB=0.0854701;ABP=177.638;RUN=1;RPP=10.8276;RPPR=46.1843;RPL=2.0;RPR=8.0;EPP=6.48466;EPPR=19.3602;DPRA=0.0;ODDS=4.67864;GTI=0;TYPE=del;CIGAR=1M1D32M;NUMALT=4;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:20.2081:33:11:381:2:76:-4.18914,0.0,-49.7969:2:9:23:.:.:1:.:.:.:-0.480745	0/1:23.6886:84:23:799:8:228:-11.8195,0.0,-109.149:8:16:49:.:.:1:.:.:.:-0.0152891
chr13	41217501	.	GAAAAG	AAAAAA	104.943	REJECT	NS=2;DP=117;DPB=199.559;AC=2;AN=2;AF=0.0;RO=34;AO=5;PRO=47.7667;PAO=25.5167;QR=1180;QA=58;PQR=1642.95;PQA=719.7;SRF=27;SRR=7;SAF=5;SAR=0;SRP=28.557;SAP=13.8677;AB=0.042735;ABP=215.499;RUN=1;RPP=3.44459;RPPR=46.1843;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=19.3602;DPRA=0.0;ODDS=4.67864;GTI=0;TYPE=complex;CIGAR=17M1X4M1X11M;NUMALT=4;MEANALT=24.0;LEN=34;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.2081:33:11:381:2:28:-4.18914,-23.819,-272.408:2:9:23:.:.:1:.:.:.:-0.480745	./1:23.6886:84:23:799:3:30:-11.8195,-85.527,-919.306:3:6:49:.:.:1:.:.:.:-0.0152891
chr13	41217849	.	A	G	8482.400000000001	REJECT	NS=2;DP=379;DPB=438.0;AC=3;AN=4;AF=0.75;RO=116;AO=322;PRO=0.0;PAO=0.0;QR=4198;QA=11752;PQR=0.0;PQA=0.0;SRF=52;SRR=64;SAF=158;SAR=164;SRP=5.70592;SAP=3.25307;AB=0.639752;ABP=57.6343;RUN=1;RPP=16.0661;RPPR=4.88226;RPL=183.0;RPR=139.0;EPP=18.5478;EPPR=3.08518;DPRA=0.0;ODDS=73.2063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987578;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.041;Dels=0.0;FS=1.2555;HaplotypeScore=17.4357;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.296;QD=27.215;ReadPosRankSum=0.245;SOR=0.621	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.8725:114:0:0:116:4199:-377.882,-31.3671,0.0:114:100:114:0,112:4464,335,0:1:.:1:.:.:.:-0.480745	0/1:120.8725:321:116:4198:206:7553:-592.238,0.0,-290.564:205:64:321:116,205:7380,0,3715:.:1:1:.:.:.:-0.0152891
chr13	41217991	.	C	T	8385.26	REJECT	NS=2;DP=347;DPB=395.0;AC=3;AN=4;AF=0.75;RO=103;AO=290;PRO=0.0;PAO=0.0;QR=3959;QA=11213;PQR=0.0;PQA=0.0;SRF=51;SRR=52;SAF=153;SAR=137;SRP=3.03138;SAP=4.92719;AB=0.653333;ABP=64.2748;RUN=1;RPP=3.75908;RPPR=4.04333;RPL=140.0;RPR=150.0;EPP=7.32329;EPPR=5.56125;DPRA=0.0;ODDS=59.6769;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.197;Dels=0.0;FS=2.043;HaplotypeScore=4.9546;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.61;QD=25.34;ReadPosRankSum=-1.218;SOR=0.893	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:94:3652:-328.756,-25.4914,0.0:94:100:94:0,94:3986,283,0:1:.:1:.:.:.:-0.480745	0/1:129.501:299:103:3959:196:7561:-599.079,0.0,-275.128:196:66:298:102,196:7586,0,3497:.:1:1:.:.:.:-0.0152891
chr13	41218134	.	T	C	9535.635	REJECT	NS=2;DP=392;DPB=447.0;AC=3;AN=4;AF=0.75;RO=114;AO=331;PRO=0.0;PAO=0.0;QR=4383;QA=12735;PQR=0.0;PQA=0.0;SRF=58;SRR=56;SAF=169;SAR=162;SRP=3.08649;SAP=3.33176;AB=0.656805;ABP=75.1957;RUN=1;RPP=3.01686;RPPR=6.74371;RPL=166.0;RPR=165.0;EPP=4.48638;EPPR=3.69603;DPRA=0.0;ODDS=68.9854;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993958;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.537;Dels=0.0;FS=0.208;HaplotypeScore=6.8653;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.278;QD=28.555;ReadPosRankSum=0.149;SOR=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:109:4161:-374.511,-29.534,0.0:106:100:106:0,104:4379,313,0:1:.:1:.:.:.:-0.480745	0/1:129.501:338:114:4383:222:8574:-680.17,0.0,-303.198:222:66:336:114,222:8614,0,3883:.:1:1:.:.:.:-0.0152891
chr13	41218451	.	C	T	9382.135	REJECT	NS=2;DP=408;DPB=467.0;AC=3;AN=4;AF=0.75;RO=130;AO=337;PRO=0.0;PAO=0.0;QR=4992;QA=12818;PQR=0.0;PQA=0.0;SRF=70;SRR=60;SAF=186;SAR=151;SRP=4.68066;SAP=10.9036;AB=0.628571;ABP=53.2644;RUN=1;RPP=17.2441;RPPR=3.0103;RPL=145.0;RPR=192.0;EPP=13.8419;EPPR=3.27756;DPRA=0.0;ODDS=73.9297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.598;Dels=0.0;FS=0.4195;HaplotypeScore=5.8658;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.364;QD=25.635;ReadPosRankSum=0.838;SOR=0.8415	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:117:4450:-400.466,-31.6813,0.0:115:100:115:0,114:4698,342,0:1:.:1:.:.:.:-0.480745	0/1:129.501:350:130:4992:220:8368:-657.842,0.0,-354.243:220:63:350:130,220:8302,0,4557:.:1:1:.:.:.:-0.0152891
chr13	41218670	.	C	T	9736.085	REJECT	NS=2;DP=433;DPB=501.0;AC=3;AN=4;AF=0.75;RO=140;AO=360;PRO=0.0;PAO=0.0;QR=5340;QA=13522;PQR=0.0;PQA=0.0;SRF=70;SRR=70;SAF=181;SAR=179;SRP=3.0103;SAP=3.03443;AB=0.614754;ABP=44.8734;RUN=1;RPP=3.39634;RPPR=10.5174;RPL=176.0;RPR=184.0;EPP=3.03443;EPPR=3.07234;DPRA=0.0;ODDS=85.146;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997222;PAIREDR=0.992857;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.784;Dels=0.0;FS=0.6315;HaplotypeScore=15.5917;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.099;QD=26.81;ReadPosRankSum=-0.822;SOR=0.801	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:134:0:0:135:5033:-452.908,-36.5525,0.0:134:100:134:0,133:5406,398,0:1:.:1:.:.:.:-0.480745	0/1:129.501:365:140:5340:225:8489:-664.683,0.0,-381.489:224:62:364:140,224:8385,0,4906:.:1:1:.:.:.:-0.0152891
chr13	41218685	.	G	A	10141.235	REJECT	NS=2;DP=435;DPB=499.0;AC=3;AN=4;AF=0.75;RO=139;AO=360;PRO=0.0;PAO=0.0;QR=5320;QA=13822;PQR=0.0;PQA=0.0;SRF=68;SRR=71;SAF=188;SAR=172;SRP=3.1509;SAP=4.55446;AB=0.625337;ABP=53.6331;RUN=1;RPP=4.96463;RPPR=7.52509;RPL=171.0;RPR=189.0;EPP=3.61349;EPPR=3.02592;DPRA=0.0;ODDS=80.7834;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992806;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.909;Dels=0.0;FS=0.0;HaplotypeScore=10.703;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.359;QD=28.295;ReadPosRankSum=0.683;SOR=0.842	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:128:4849:-436.348,-34.6578,0.0:127:100:127:0,126:5192,377,0:1:.:1:.:.:.:-0.480745	0/1:129.501:371:139:5320:232:8973:-706.533,0.0,-378.014:232:63:371:139,232:8946,0,4840:.:1:1:.:.:.:-0.0152891
chr13	41219125	.	G	A	9753.435000000001	REJECT	NS=2;DP=387;DPB=446.0;AC=3;AN=4;AF=0.75;RO=104;AO=339;PRO=0.0;PAO=0.0;QR=3972;QA=13084;PQR=0.0;PQA=0.0;SRF=47;SRR=57;SAF=173;SAR=166;SRP=5.09825;SAP=3.32417;AB=0.677812;ABP=93.3607;RUN=1;RPP=3.32417;RPPR=7.10269;RPL=166.0;RPR=173.0;EPP=3.52915;EPPR=3.34437;DPRA=0.0;ODDS=73.3471;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9941;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.082;Dels=0.0;FS=2.701;HaplotypeScore=5.9324;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.857;QD=29.085;ReadPosRankSum=0.341;SOR=0.645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4461:-401.473,-31.4283,0.0:114:100:114:0,112:4770,337,0:1:.:1:.:.:.:-0.480745	0/1:129.501:329:104:3972:223:8623:-687.012,0.0,-268.683:223:68:327:104,223:8711,0,3451:.:1:1:.:.:.:-0.0152891
chr13	41219434	.	T	A	10809.235	REJECT	NS=2;DP=453;DPB=521.0;AC=3;AN=4;AF=0.75;RO=134;AO=387;PRO=0.0;PAO=0.0;QR=5102;QA=14678;PQR=0.0;PQA=0.0;SRF=72;SRR=62;SAF=199;SAR=188;SRP=4.6308;SAP=3.68924;AB=0.654545;ABP=82.881;RUN=1;RPP=3.46479;RPPR=4.6308;RPL=189.0;RPR=198.0;EPP=7.72918;EPPR=6.18648;DPRA=0.0;ODDS=80.2419;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.782;Dels=0.0;FS=0.6285;HaplotypeScore=3.9549;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.699;QD=26.91;ReadPosRankSum=0.577;SOR=0.6675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:135:1:27:135:5079:-454.583,-34.3819,0.0:135:99:135:0,135:5361,404,0:1:.:1:.:.:.:-0.480745	0/1:129.501:385:133:5075:252:9599:-759.08,0.0,-352.212:252:65:385:133,252:9576,0,4512:.:1:1:.:.:.:-0.0152891
chr13	41220204	.	C	CA	271.988	REJECT	NS=2;DP=161;DPB=240.304;AC=2;AN=4;AF=0.5;RO=60;AO=21;PRO=40.8833;PAO=36.3833;QR=2150;QA=634;PQR=1436.58;PQA=1277.58;SRF=34;SRR=26;SAF=14;SAR=7;SRP=5.32654;SAP=8.07707;AB=0.130435;ABP=194.005;RUN=1;RPP=11.386;RPPR=49.9141;RPL=6.0;RPR=15.0;EPP=8.07707;EPPR=3.58936;DPRA=0.0;ODDS=2.78976;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=5;MEANALT=23.5;LEN=1;MQM=60.0;MQMR=59.4833;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.226;FS=1.928;MLEAC=1;MLEAF=0.5;MQ=58.21;MQRankSum=-0.771;QD=0.87;RPA=16,17;RU=A;ReadPosRankSum=0.218;SOR=0.455;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.0418:36:13:450:2:69:-1.87865,0.0,-39.6336:2:7:27:.:.:.:.:1:.:.:.:-0.480745	0/1:120.0785:150:47:1700:19:565:-31.685,0.0,-176.661:24:23:104:94,29:189,0,1296:.:1:1:.:.:.:-0.0152891
chr13	41220204	.	CA	C	271.988	REJECT	NS=2;DP=161;DPB=240.304;AC=2;AN=2;AF=0.0;RO=60;AO=18;PRO=40.8833;PAO=25.55;QR=2150;QA=569;PQR=1436.58;PQA=902.25;SRF=34;SRR=26;SAF=9;SAR=9;SRP=5.32654;SAP=3.0103;AB=0.111801;ABP=213.751;RUN=1;RPP=10.7311;RPPR=49.9141;RPL=5.0;RPR=13.0;EPP=7.35324;EPPR=3.58936;DPRA=0.0;ODDS=2.78976;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=5;MEANALT=23.5;LEN=1;MQM=60.0;MQMR=59.4833;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.0418:36:13:450:5:180:-1.87865,-0.542092,-135.275:5:19:27:.:.:1:.:.:.:-0.480745	./1:141.157:125:47:1700:13:389:-31.685,-30.542,-353.176:13:15:85:.:.:1:.:.:.:-0.0152891
chr13	41220204	.	CAA	C	271.988	REJECT	NS=2;DP=161;DPB=240.304;AC=2;AN=2;AF=0.0;RO=60;AO=6;PRO=40.8833;PAO=24.0833;QR=2150;QA=205;PQR=1436.58;PQA=848.25;SRF=34;SRR=26;SAF=5;SAR=1;SRP=5.32654;SAP=8.80089;AB=0.0372671;ABP=302.444;RUN=1;RPP=3.0103;RPPR=49.9141;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=3.58936;DPRA=0.0;ODDS=2.78976;GTI=0;TYPE=del;CIGAR=1M2D20M;NUMALT=5;MEANALT=23.5;LEN=2;MQM=60.0;MQMR=59.4833;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.0418:36:13:450:3:93:-1.87865,-10.0086,-171.231:3:11:27:.:.:1:.:.:.:-0.480745	./1:141.157:125:47:1700:3:112:-31.685,-57.6371,-433.806:3:4:85:.:.:1:.:.:.:-0.0152891
chr13	41220220	.	AGT	GA	271.988	REJECT	NS=2;DP=161;DPB=240.304;AC=2;AN=2;AF=0.0;RO=60;AO=3;PRO=40.8833;PAO=9.13333;QR=2150;QA=48;PQR=1436.58;PQA=291.5;SRF=34;SRR=26;SAF=3;SAR=0;SRP=5.32654;SAP=9.52472;AB=0.0186335;ABP=327.045;RUN=1;RPP=9.52472;RPPR=49.9141;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=3.58936;DPRA=0.0;ODDS=2.78976;GTI=0;TYPE=complex;CIGAR=1M1D16M1X4M;NUMALT=5;MEANALT=23.5;LEN=22;MQM=60.0;MQMR=59.4833;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.0418:36:13:450:2:32:-1.87865,-29.0595,-334.327:2:7:27:.:.:1:.:.:.:-0.480745	./1:141.157:125:47:1700:1:16:-31.685,-114.611,-1072.86:1:1:85:.:.:1:.:.:.:-0.0152891
chr13	41220222	.	T	A	271.988	REJECT	NS=2;DP=161;DPB=240.304;AC=2;AN=2;AF=0.0;RO=60;AO=4;PRO=40.8833;PAO=21.9667;QR=2150;QA=64;PQR=1436.58;PQA=738.833;SRF=34;SRR=26;SAF=4;SAR=0;SRP=5.32654;SAP=11.6962;AB=0.0248447;ABP=318.737;RUN=1;RPP=5.18177;RPPR=49.9141;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=3.58936;DPRA=0.0;ODDS=2.78976;GTI=0;TYPE=snp;CIGAR=18M1X4M;NUMALT=5;MEANALT=23.5;LEN=1;MQM=60.0;MQMR=59.4833;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.0418:36:13:450:2:32:-1.87865,-19.3342,-228.689:2:7:27:.:.:1:.:.:.:-0.480745	./1:141.157:125:47:1700:2:32:-31.685,-96.647,-876.013:2:2:85:.:.:1:.:.:.:-0.0152891
chr13	41220428	.	CCTTTTTTTTTTTTTTTTTGAGAT	GCTTTTTTTTTTTTTTTTGAGAC	4313.38	REJECT	SOMATIC;NS=2;DP=141;DPB=207.154;AC=1;AN=3;AF=0.0;RO=18;AO=3;PRO=40.5548;PAO=7.07143;QR=609;QA=57;PQR=1411.54;PQA=187.31;SRF=7;SRR=11;SAF=0;SAR=3;SRP=4.9405;SAP=9.52472;AB=0.0212766;ABP=283.685;RUN=1;RPP=3.73412;RPPR=3.49285;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=complex;CIGAR=1X1M1D20M1X2M;NUMALT=6;MEANALT=21.5;LEN=25;MQM=53.3333;MQMR=57.7778;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.646:30:0:0:2:35:-145.199,-73.8569,-476.223:2:8:25:.:.:.:.:.:.:-0.480745	./1:136.646:111:18:609:1:22:-292.268,-156.551,-1410.7:1:1:71:.:.:1:.:.:.:-0.0152891
chr13	41220429	.	CT	C	516.76	PASS	DP=131;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.212;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=0.9995;QD=4.405;RPA=17,16;RU=T;ReadPosRankSum=1.1765;SOR=1.2015;STR;ClippingRankSum=-0.397	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6,18:24:40.0:292,0,40:18:75:24:1:.:.:.:.:.:-0.480745	0/1:63,70:204:99.0:797,0,786:70:53:133:.:1:.:.:.:.:-0.0152891
chr13	41220443	.	TTTTGAGAT	GAGAC	4313.38	REJECT	SOMATIC;NS=2;DP=141;DPB=207.154;AC=1;AN=3;AF=0.0;RO=18;AO=3;PRO=40.5548;PAO=16.9048;QR=609;QA=82;PQR=1411.54;PQA=562.976;SRF=7;SRR=11;SAF=1;SAR=2;SRP=4.9405;SAP=3.73412;AB=0.0212766;ABP=283.685;RUN=1;RPP=3.73412;RPPR=3.49285;RPL=2.0;RPR=1.0;EPP=9.52472;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=complex;CIGAR=2M4D17M1X2M;NUMALT=6;MEANALT=21.5;LEN=22;MQM=60.0;MQMR=57.7778;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.646:30:0:0:2:43:-145.199,-53.8277,-115.23:2:8:25:.:.:.:.:.:.:-0.480745	./1:136.646:111:18:609:1:39:-292.268,-82.4116,-452.692:1:1:71:.:.:1:.:.:.:-0.0152891
chr13	41220444	.	TTTGAGAT	GAGAC	4313.38	REJECT	SOMATIC;NS=2;DP=141;DPB=207.154;AC=1;AN=3;AF=0.0;RO=18;AO=6;PRO=40.5548;PAO=18.3048;QR=609;QA=133;PQR=1411.54;PQA=616.376;SRF=7;SRR=11;SAF=1;SAR=5;SRP=4.9405;SAP=8.80089;AB=0.0540541;ABP=194.745;RUN=1;RPP=8.80089;RPPR=3.49285;RPL=5.0;RPR=1.0;EPP=4.45795;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=complex;CIGAR=2M3D18M1X2M;NUMALT=6;MEANALT=33.0;LEN=23;MQM=60.0;MQMR=57.7778;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.646:30:0:0:0:0:-145.199,-57.1614,-119.095:0:0:25:.:.:.:.:.:.:-0.480745	./1:136.646:111:18:609:6:133:-292.268,-65.8172,-324.157:6:8:71:.:.:1:.:.:.:-0.0152891
chr13	41220445	.	TTGAGAT	GAGAC	4313.38	REJECT	SOMATIC;NS=2;DP=141;DPB=207.154;AC=1;AN=3;AF=0.0;RO=18;AO=10;PRO=40.5548;PAO=19.5548;QR=609;QA=225;PQR=1411.54;PQA=662.376;SRF=7;SRR=11;SAF=2;SAR=8;SRP=4.9405;SAP=10.8276;AB=0.070922;ABP=228.489;RUN=1;RPP=16.9077;RPPR=3.49285;RPL=9.0;RPR=1.0;EPP=6.48466;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=complex;CIGAR=2M2D19M1X2M;NUMALT=6;MEANALT=21.5;LEN=24;MQM=58.0;MQMR=57.7778;PAIRED=0.9;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:136.646:30:0:0:3:74:-145.199,-51.3049,-112.438:3:12:25:.:.:.:.:.:.:-0.480745	./1:136.646:111:18:609:7:151:-292.268,-59.0477,-256.307:7:10:71:.:.:1:.:.:.:-0.0152891
chr13	41220446	.	TGAGAT	GAGAC	4313.38	REJECT	NS=2;DP=141;DPB=207.154;AC=2;AN=3;AF=0.5;RO=18;AO=41;PRO=40.5548;PAO=28.5548;QR=609;QA=892;PQR=1411.54;PQA=972.21;SRF=7;SRR=11;SAF=18;SAR=23;SRP=4.9405;SAP=4.33437;AB=0.29078;ABP=56.6195;RUN=1;RPP=4.33437;RPPR=3.49285;RPL=23.0;RPR=18.0;EPP=4.33437;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=complex;CIGAR=2M1D20M1X2M;NUMALT=6;MEANALT=21.5;LEN=25;MQM=59.2683;MQMR=57.7778;PAIRED=0.97561;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.646:30:0:0:13:289:-145.199,-18.1372,-23.9986:13:52:25:.:.:1:.:.:.:-0.480745	0/1:136.646:111:18:609:28:603:-292.268,0.0,-127.727:28:39:71:.:.:1:.:.:.:-0.0152891
chr13	41220451	.	T	C	3681.075	REJECT	NS=2;DP=141;DPB=207.154;AC=2;AN=2;AF=0.375;RO=18;AO=15;PRO=40.5548;PAO=35.0548;QR=609;QA=326;PQR=1411.54;PQA=1161.21;SRF=7;SRR=11;SAF=7;SAR=8;SRP=4.9405;SAP=3.15506;AB=0.106383;ABP=192.76;RUN=1;RPP=6.62942;RPPR=3.49285;RPL=10.0;RPR=5.0;EPP=3.15506;EPPR=10.7311;DPRA=0.0;ODDS=40.1102;GTI=0;TYPE=snp;CIGAR=23M1X2M;NUMALT=6;MEANALT=21.5;LEN=1;MQM=54.8667;MQMR=57.7778;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=1;BaseQRankSum=-2.885;Dels=0.0;FS=0.643;HaplotypeScore=44.472;MLEAC=1;MLEAF=0.75;MQ=58.615;MQRankSum=1.53;QD=21.52;ReadPosRankSum=0.223;SOR=1.1205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:117.823:32:0:0:5:121:-145.199,-34.7091,-24.9229:20:60:30:0,35:1468,105,0:1:.:1:.:.:.:-0.480745	./1:117.823:153:18:609:10:205:-292.268,-32.2734,-83.328:66:38:133:73,122:3077,0,1896:.:1:1:.:.:.:-0.0152891
chr13	41220777	.	G	C	2529.565	REJECT	NS=2;DP=123;DPB=143.0;AC=3;AN=4;AF=0.75;RO=43;AO=100;PRO=0.0;PAO=0.0;QR=1609;QA=3696;PQR=0.0;PQA=0.0;SRF=8;SRR=35;SAF=21;SAR=79;SRP=39.8243;SAP=76.0586;AB=0.590476;ABP=10.476;RUN=1;RPP=6.13722;RPPR=4.27278;RPL=56.0;RPR=44.0;EPP=22.5536;EPPR=3.0608;DPRA=0.0;ODDS=24.7252;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8;MQMR=60.0;PAIRED=1.0;PAIREDR=0.930233;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.947;Dels=0.0;FS=1.039;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=59.92;MQRankSum=-0.347;QD=25.825;ReadPosRankSum=-0.246;SOR=1.7645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:103.1885:37:0:0:38:1420:-128.054,-10.312,0.0:37:100:37:0,37:1579,111,0:1:.:1:.:.:.:-0.480745	0/1:127.9815:104:43:1609:62:2276:-176.423,0.0,-116.408:62:59:104:41,62:2194,0,1415:.:1:1:.:.:.:-0.0152891
chr13	41221589	.	G	T	3464.91	REJECT	NS=2;DP=137;DPB=153.0;AC=3;AN=4;AF=0.75;RO=34;AO=119;PRO=0.0;PAO=0.0;QR=1320;QA=4530;PQR=0.0;PQA=0.0;SRF=6;SRR=28;SAF=18;SAR=101;SRP=33.9218;SAP=128.718;AB=0.721311;ABP=54.9121;RUN=1;RPP=3.17453;RPPR=7.09778;RPL=61.0;RPR=58.0;EPP=3.46649;EPPR=7.09778;DPRA=0.0;ODDS=20.3322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8319;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.642;Dels=0.0;FS=1.181;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.75;MQ=59.93;MQRankSum=1.094;QD=29.49;ReadPosRankSum=1.054;SOR=1.867	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:88.6508:30:0:0:31:1165:-105.099,-8.40419,0.0:30:100:30:0,30:1239,89,0:1:.:1:.:.:.:-0.480745	0/1:119.9865:122:34:1320:88:3365:-269.773,0.0,-85.7287:88:72:122:34,88:3400,0,1118:.:1:1:.:.:.:-0.0152891
chr13	41222067	.	C	A	2954.28	PASS	SOMATIC;NS=2;DP=397;DPB=397.0;AC=1;AN=3;AF=0.25;RO=285;AO=112;PRO=0.0;PAO=0.0;QR=11085;QA=4280;PQR=0.0;PQA=0.0;SRF=146;SRR=139;SAF=67;SAR=45;SRP=3.38364;SAP=12.3942;AB=0.367213;ABP=49.7219;RUN=1;RPP=4.25114;RPPR=5.76083;RPL=52.0;RPR=60.0;EPP=9.29206;EPPR=4.29794;DPRA=3.31522;ODDS=58.431;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996491;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.412;Dels=0.0;FS=5.46;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.704;QD=12.68;ReadPosRankSum=0.795;SOR=0.983	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:89:92:3588:0:0:0.0,-24.9503,-322.999:0:0:89:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.480745	0/1:129.501:305:193:7497:112:4280:-302.358,0.0,-591.692:112:37:305:187,109:38.0:0.369:2:3895,0,7467:.:1:1:.:.:1:-0.0152891
chr13	41222112	.	C	T	8384.970000000001	REJECT	NS=2;DP=379;DPB=430.0;AC=3;AN=4;AF=0.75;RO=128;AO=302;PRO=0.0;PAO=0.0;QR=4908;QA=11409;PQR=0.0;PQA=0.0;SRF=73;SRR=55;SAF=141;SAR=161;SRP=8.50684;SAP=5.88642;AB=0.610942;ABP=38.1829;RUN=1;RPP=8.6475;RPPR=3.28173;RPL=137.0;RPR=165.0;EPP=6.49041;EPPR=14.4784;DPRA=0.0;ODDS=63.9461;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996689;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.837;Dels=0.0;FS=4.7835;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.366;QD=27.84;ReadPosRankSum=0.622;SOR=0.7165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.6035:98:0:0:101:3765:-338.886,-27.3454,0.0:98:100:98:0,96:3837,287,0:1:.:1:.:.:.:-0.480745	0/1:119.6035:328:128:4908:201:7644:-598.418,0.0,-352.372:200:61:328:128,200:7496,0,4529:.:1:1:.:.:.:-0.0152891
chr13	41222213	.	A	AT	23.8885	REJECT	NS=2;DP=368;DPB=463.05;AC=2;AN=3;AF=0.25;RO=329;AO=18;PRO=91.8333;PAO=63.8333;QR=12459;QA=640;PQR=3273.83;PQA=2262.83;SRF=210;SRR=119;SAF=14;SAR=4;SRP=57.6667;SAP=15.074;AB=0.0833333;ABP=111.584;RUN=1;RPP=3.49285;RPPR=20.1775;RPL=8.0;RPR=10.0;EPP=3.49285;EPPR=14.1053;DPRA=0.0;ODDS=5.49643;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987842;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23.8885:72:57:2161:6:225:-6.94828,0.0,-201.472:6:9:67:.:.:1:.:.:.:-0.480745	./1:160.002:296:272:10298:12:415:0.0,-39.6304,-959.714:12:4:291:.:.:1:.:.:.:-0.0152891
chr13	41222213	.	AT	A	23.8885	REJECT	NS=2;DP=368;DPB=463.05;AC=2;AN=2;AF=0.0;RO=329;AO=11;PRO=91.8333;PAO=56.3333;QR=12459;QA=414;PQR=3273.83;PQA=1985.33;SRF=210;SRR=119;SAF=7;SAR=4;SRP=57.6667;SAP=4.78696;AB=0.0555556;ABP=126.543;RUN=1;RPP=3.20771;RPPR=20.1775;RPL=6.0;RPR=5.0;EPP=7.94546;EPPR=14.1053;DPRA=0.0;ODDS=5.49643;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987842;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:23.8885:72:57:2161:4:156:-6.94828,-10.0014,-229.21:4:6:67:.:.:1:.:.:.:-0.480745	./1:160.002:296:272:10298:7:258:0.0,-62.1288,-1022.22:7:2:291:.:.:1:.:.:.:-0.0152891
chr13	41223886	.	C	T	3579.07	PASS	SOMATIC;NS=2;DP=519;DPB=519.0;AC=1;AN=3;AF=0.25;RO=380;AO=139;PRO=0.0;PAO=0.0;QR=14360;QA=5213;PQR=0.0;PQA=0.0;SRF=202;SRR=178;SAF=73;SAR=66;SRP=6.30179;SAP=3.77578;AB=0.363874;ABP=64.4937;RUN=1;RPP=4.90057;RPPR=3.58174;RPL=75.0;RPR=64.0;EPP=22.1474;EPPR=9.61615;DPRA=2.78832;ODDS=86.4005;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992806;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.091;Dels=0.0;FS=0.384;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.853;QD=12.12;ReadPosRankSum=-0.285;SOR=0.662	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.781:131:137:5194:0:0:0.0,-37.0973,-467.369:0:0:131:126,0:.:0.0:0:.:.:.:0:.:.:0:-0.480745	0/1:119.8905:381:243:9166:139:5213:-365.477,0.0,-720.994:139:36:381:235,131:37.0:0.352:2:4647,0,9015:.:1:1:.:.:1:-0.0152891
chr13	41224287	.	CTATA	C	1251.91	REJECT	NS=2;DP=58;DPB=57.0833;AC=3;AN=4;AF=0.75;RO=20;AO=43;PRO=9.5;PAO=8.5;QR=755;QA=1583;PQR=338.0;PQA=298.0;SRF=12;SRR=8;SAF=20;SAR=23;SRP=4.74748;SAP=3.46479;AB=0.555556;ABP=4.21667;RUN=1;RPP=7.10075;RPPR=3.44459;RPL=17.0;RPR=26.0;EPP=3.46479;EPPR=3.44459;DPRA=0.0;ODDS=12.2561;GTI=0;TYPE=del;CIGAR=1M4D7M;NUMALT=1;MEANALT=1.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41224291;HOMLEN=6;HOMSEQ=TATATA;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=-0.354;FS=1.297;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.131;QD=23.695;RPA=5,3;RU=TA;ReadPosRankSum=0.491;SOR=0.742;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:58.11385:20:0:0:18:672:-60.7041,-4.8968,0.0:21:100:21:1,27:934,63,0:1:.:1:1:.:.:-0.480745	0/1:127.283:49:20:755:25:911:-69.6055,0.0,-59.169:25:56:45:22,39:1540,0,1204:.:1:1:1:.:.:-0.0152891
chr13	41224442	.	C	T	1754.0	REJECT	NS=2;DP=83;DPB=96.0;AC=3;AN=4;AF=0.75;RO=29;AO=67;PRO=0.0;PAO=0.0;QR=1118;QA=2518;PQR=0.0;PQA=0.0;SRF=17;SRR=12;SAF=43;SAR=24;SRP=4.88226;SAP=14.7103;AB=0.585714;ABP=7.47733;RUN=1;RPP=3.04271;RPPR=3.68421;RPL=33.0;RPR=34.0;EPP=5.63551;EPPR=15.6647;DPRA=0.0;ODDS=17.2545;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.9552;MQMR=60.0;PAIRED=0.985075;PAIREDR=0.931034;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.644;Dels=0.0;FS=0.0;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.75;MQ=59.2;MQRankSum=-0.453;QD=22.95;ReadPosRankSum=0.954;SOR=1.112	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:71.9676:24:0:0:26:963:-86.4635,-7.06755,0.0:24:100:24:0,23:1000,69,0:1:.:1:.:.:.:-0.480745	0/1:121.5335:70:29:1118:41:1555:-121.004,0.0,-81.7072:41:59:70:29,41:1525,0,1049:.:1:1:.:.:.:-0.0152891
chr13	41224813	.	C	T	9709.585	REJECT	NS=2;DP=419;DPB=474.0;AC=3;AN=4;AF=0.75;RO=135;AO=339;PRO=0.0;PAO=0.0;QR=5098;QA=13032;PQR=0.0;PQA=0.0;SRF=54;SRR=81;SAF=117;SAR=222;SRP=14.7363;SAP=73.6312;AB=0.63388;ABP=59.9907;RUN=1;RPP=3.01671;RPPR=3.79846;RPL=170.0;RPR=169.0;EPP=7.01375;EPPR=3.15506;DPRA=0.0;ODDS=64.738;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9941;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.233;Dels=0.0;FS=5.7805;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.3575;QD=26.755;ReadPosRankSum=0.5675;SOR=0.9965;ClippingRankSum=0.346	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:1:16:107:4074:-365.213,-27.7999,0.0:105:99:106:1,104:4321,305,0:1:.:1:.:.:.:-0.480745	0/1:129.501:365:134:5082:232:8958:-706.558,0.0,-357.974:231:63:365:134,231:8866,0,4564:.:1:1:.:.:.:-0.0152891
chr13	41225094	.	G	T	117.27000000000001	PASS	DP=24;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.039;Dels=0.0;FS=4.917;HaplotypeScore=7.9652;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-0.821;QD=5.27;ReadPosRankSum=0.2065;SOR=0.5975;ClippingRankSum=-0.715	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8,3:11:94.0:94,0,317:3:27:11:1:.:.:.:.:.:-0.480745	0/1:30,7:37:99.0:197,0,1108:7:19:37:.:1:.:.:.:.:-0.0152891
chr13	41225094	.	GTTA	TTTG	654.47	REJECT	NS=2;DP=49;DPB=49.75;AC=2;AN=2;AF=0.25;RO=15;AO=12;PRO=0.5;PAO=0.0;QR=556;QA=385;PQR=17.0;PQA=0.0;SRF=5;SRR=10;SAF=5;SAR=7;SRP=6.62942;SAP=3.73412;AB=0.244898;ABP=30.7077;RUN=1;RPP=9.52472;RPPR=4.31318;RPL=3.0;RPR=9.0;EPP=5.9056;EPPR=10.1038;DPRA=0.0;ODDS=12.5262;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=2;MEANALT=2.0;LEN=4;MQM=58.75;MQMR=60.0;PAIRED=0.916667;PAIREDR=0.866667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.3902:13:0:0:5:115:-35.0877,-26.0176,-24.6844:5:38:13:.:.:1:.:.:.:-0.480745	./1:151.253:36:15:556:7:270:-39.0218,-21.2732,-71.0378:7:19:36:.:.:1:.:.:.:-0.0152891
chr13	41225097	.	A	G	654.47	REJECT	NS=2;DP=42;DPB=49.75;AC=2;AN=3;AF=0.5;RO=15;AO=22;PRO=0.5;PAO=0.5;QR=556;QA=831;PQR=17.0;PQA=17.0;SRF=5;SRR=10;SAF=6;SAR=16;SRP=6.62942;SAP=12.8806;AB=0.44898;ABP=4.11819;RUN=1;RPP=9.32731;RPPR=4.31318;RPL=15.0;RPR=7.0;EPP=17.2236;EPPR=10.1038;DPRA=0.0;ODDS=12.5262;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.866667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.834;Dels=0.0;FS=0.0;HaplotypeScore=7.9652;MLEAC=1;MLEAF=0.75;MQ=59.815;MQRankSum=-1.091;QD=26.45;ReadPosRankSum=0.513;SOR=1.172	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.6951:12:0:0:8:311:-35.0877,-9.07016,-6.88466:9:81:12:0,11:484,33,0:1:.:1:.:.:.:-0.480745	0/1:125.1265:36:15:556:14:520:-39.0218,0.0,-42.2798:17:48:36:15,21:813,0,497:.:1:1:.:.:.:-0.0152891
chr13	41225228	.	G	T	580.77	PASS	DP=31;AC=3;AN=4;AF=0.75;MQ0=0;ALERT;BaseQRankSum=0.312;Dels=0.02;FS=1.797;HaplotypeScore=31.9948;MLEAC=1;MLEAF=0.75;MQ=59.745;MQRankSum=-0.918;QD=21.285;ReadPosRankSum=1.846;SOR=2.198	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,10:10:30.0:450,30,0:10:100:10:1:.:.:.:.:.:-0.480745	0/1:28,23:51:99.0:768,0,1017:23:45:51:.:1:.:.:.:.:-0.0152891
chr13	41225228	.	GTTTTTTGTTTTTTGTTTTTG	TGTTTTTGTTTTTGTTTTTT	1066.91	REJECT	NS=2;DP=40;DPB=74.5238;AC=3;AN=4;AF=0.75;RO=12;AO=24;PRO=54.5;PAO=52.5;QR=445;QA=810;PQR=1850.5;PQA=1768.5;SRF=12;SRR=0;SAF=22;SAR=2;SRP=29.068;SAP=39.2015;AB=0.558824;ABP=4.03217;RUN=1;RPP=3.37221;RPPR=5.9056;RPL=13.0;RPR=11.0;EPP=3.37221;EPPR=5.9056;DPRA=0.0;ODDS=7.86986;GTI=0;TYPE=complex;CIGAR=6M2X6M1D11M1X15M;NUMALT=1;MEANALT=3.0;LEN=41;MQM=59.5417;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:34.18:6:0:0:5:182:-36.4011,-2.99187,0.0:5:100:5:.:.:1:.:.:.:-0.480745	0/1:160.002:34:12:445:19:628:-78.604,0.0,-89.5498:19:61:31:.:.:1:.:.:.:-0.0152891
chr13	41225229	.	T	G	566.77	PASS	DP=31;AC=3;AN=4;AF=0.75;MQ0=0;ALERT;BaseQRankSum=0.074;Dels=0.0;FS=2.833;HaplotypeScore=31.9948;MLEAC=1;MLEAF=0.75;MQ=59.745;MQRankSum=-2.008;QD=24.4;ReadPosRankSum=1.842;SOR=2.1595	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,10:10:30.0:450,30,0:10:100:10:1:.:.:.:.:.:-0.480745	0/1:29,23:52:99.0:740,0,1091:23:44:52:.:1:.:.:.:.:-0.0152891
chr13	41225235	.	GT	G	705.73	PASS	DP=34;AC=3;AN=4;AF=0.75;MQ0=0;BaseQRankSum=-0.081;FS=0.9755;MLEAC=1;MLEAF=0.75;MQ=59.765;MQRankSum=-1.796;QD=22.145;RPA=6,5;RU=T;ReadPosRankSum=-0.424;SOR=2.1395;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,12:12:41.0:561,41,0:12:100:12:1:.:.:.:.:.:-0.480745	0/1:22,31:56:99.0:925,0,623:31:58:53:.:1:.:.:.:.:-0.0152891
chr13	41225248	.	G	T	871.77	PASS	DP=37;AC=3;AN=4;AF=0.75;MQ0=0;BaseQRankSum=2.344;Dels=0.03;FS=0.0;HaplotypeScore=6.8566;MLEAC=1;MLEAF=0.75;MQ=59.645;MQRankSum=0.481;QD=25.675;ReadPosRankSum=0.053;SOR=1.9015	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,13:13:38.0:516,38,0:13:100:13:1:.:.:.:.:.:-0.480745	0/1:26,33:59:99.0:1284,0,894:33:56:59:.:1:.:.:.:.:-0.0152891
chr13	41225361	.	G	C	4905.475	REJECT	NS=2;DP=200;DPB=226.0;AC=3;AN=4;AF=0.75;RO=55;AO=170;PRO=0.0;PAO=0.0;QR=2096;QA=6569;PQR=0.0;PQA=0.0;SRF=37;SRR=18;SAF=137;SAR=33;SRP=17.2631;SAP=141.167;AB=0.678161;ABP=50.9824;RUN=1;RPP=13.0246;RPPR=7.78754;RPL=71.0;RPR=99.0;EPP=5.51388;EPPR=3.04978;DPRA=0.0;ODDS=33.4599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994118;PAIREDR=0.981818;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.416;Dels=0.0;FS=4.2885;HaplotypeScore=9.7965;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.2;QD=25.815;ReadPosRankSum=-1.452;SOR=2.432	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.554:51:0:0:52:2008:-180.921,-14.1055,0.0:51:100:51:0,51:2156,153,0:1:.:1:.:.:.:-0.480745	0/1:120.1345:174:55:2096:118:4561:-363.502,0.0,-141.694:118:68:173:55,118:4610,0,1802:.:1:1:.:.:.:-0.0152891
chr13	41225666	.	ACTT	A	8082.99	REJECT	NS=2;DP=352;DPB=233.6;AC=3;AN=4;AF=0.75;RO=99;AO=279;PRO=30.5;PAO=23.5;QR=3695;QA=9946;PQR=934.5;PQA=694.5;SRF=47;SRR=52;SAF=131;SAR=148;SRP=3.55865;SAP=5.2596;AB=0.652921;ABP=62.1176;RUN=1;RPP=3.20488;RPPR=7.94546;RPL=142.0;RPR=137.0;EPP=6.44263;EPPR=3.03223;DPRA=0.0;ODDS=56.2995;GTI=0;TYPE=del;CIGAR=1M3D1M;NUMALT=1;MEANALT=2.5;LEN=3;MQM=60.5735;MQMR=60.0;PAIRED=0.992832;PAIREDR=0.989899;technology.ILLUMINA=1.0;MQ0=0;END=41225669;HOMLEN=1;HOMSEQ=C;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=2.306;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=60.495;MQRankSum=-1.14;QD=31.02;ReadPosRankSum=1.179;SOR=0.8595	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.5565:92:0:0:89:3064:-275.77,-24.0246,0.0:95:100:95:1,113:4240,286,0:1:.:1:1:.:.:-0.480745	0/1:119.5565:307:99:3695:190:6882:-538.953,0.0,-273.895:190:66:293:104,248:10734,0,5472:.:1:1:1:.:.:-0.0152891
chr13	41225874	.	G	C	8089.81	REJECT	NS=2;DP=344;DPB=388.0;AC=3;AN=4;AF=0.75;RO=100;AO=287;PRO=0.0;PAO=0.0;QR=3790;QA=10728;PQR=0.0;PQA=0.0;SRF=60;SRR=40;SAF=181;SAR=106;SRP=11.6962;SAP=45.5696;AB=0.666667;ABP=75.3927;RUN=1;RPP=4.28897;RPPR=7.26639;RPL=137.0;RPR=150.0;EPP=18.3317;EPPR=13.5202;DPRA=0.0;ODDS=55.2145;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996516;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.829;Dels=0.0;FS=1.387;HaplotypeScore=2.9638;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.063;QD=30.355;ReadPosRankSum=0.839;SOR=1.0565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:87:3212:-289.163,-23.5534,0.0:86:100:86:0,85:3442,254,0:1:.:1:.:.:.:-0.480745	0/1:129.501:300:100:3790:200:7516:-594.831,0.0,-259.687:200:67:300:100,200:7486,0,3330:.:1:1:.:.:.:-0.0152891
chr13	41226426	.	C	T	11.015	REJECT	NS=2;DP=83;DPB=149.679;AC=2;AN=2;AF=0.0;RO=28;AO=9;PRO=40.1;PAO=13.6333;QR=1009;QA=99;PQR=1413.88;PQA=405.5;SRF=6;SRR=22;SAF=0;SAR=9;SRP=22.8638;SAP=22.5536;AB=0.108434;ABP=113.546;RUN=1;RPP=5.18177;RPPR=14.1779;RPL=3.0;RPR=6.0;EPP=5.18177;EPPR=7.97367;DPRA=0.0;ODDS=1.23446;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=5;MEANALT=13.5;LEN=1;MQM=58.7778;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:5.42912:28:12:426:1:27:-2.12823,-28.1806,-331.51:1:5:22:.:.:1:.:.:.:-0.480745	./1:10.9561:55:16:583:8:72:-4.90344,-99.8713,-1217.84:8:19:42:.:.:1:.:.:.:-0.0152891
chr13	41226426	.	CT	C	11.015	REJECT	NS=2;DP=83;DPB=149.679;AC=2;AN=4;AF=0.5;RO=28;AO=12;PRO=40.1;PAO=32.1;QR=1009;QA=240;PQR=1413.88;PQA=1100.38;SRF=6;SRR=22;SAF=2;SAR=10;SRP=22.8638;SAP=14.5915;AB=0.144578;ABP=94.0813;RUN=1;RPP=9.52472;RPPR=14.1779;RPL=9.0;RPR=3.0;EPP=3.73412;EPPR=7.97367;DPRA=0.0;ODDS=1.23446;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=5;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:5.42912:28:12:426:5:99:-2.12823,0.0,-91.5008:5:23:22:.:.:1:.:.:.:-0.480745	0/1:10.9561:55:16:583:7:141:-4.90344,0.0,-128.728:7:17:42:.:.:1:.:.:.:-0.0152891
chr13	41226426	.	CTT	C	11.015	REJECT	NS=2;DP=83;DPB=149.679;AC=2;AN=2;AF=0.0;RO=28;AO=8;PRO=40.1;PAO=26.4333;QR=1009;QA=191;PQR=1413.88;PQA=923.05;SRF=6;SRR=22;SAF=2;SAR=6;SRP=22.8638;SAP=7.35324;AB=0.0963855;ABP=120.453;RUN=1;RPP=7.35324;RPPR=14.1779;RPL=6.0;RPR=2.0;EPP=3.0103;EPPR=7.97367;DPRA=0.0;ODDS=1.23446;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=5;MEANALT=13.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:5.42912:28:12:426:3:69:-2.12823,-6.21954,-108.222:3:14:22:.:.:1:.:.:.:-0.480745	./1:10.9561:55:16:583:5:122:-4.90344,-10.4513,-177.202:5:12:42:.:.:1:.:.:.:-0.0152891
chr13	41226426	.	CTTT	C	11.015	REJECT	NS=2;DP=83;DPB=149.679;AC=2;AN=2;AF=0.0;RO=28;AO=4;PRO=40.1;PAO=24.9333;QR=1009;QA=105;PQR=1413.88;PQA=869.8;SRF=6;SRR=22;SAF=1;SAR=3;SRP=22.8638;SAP=5.18177;AB=0.0481928;ABP=150.173;RUN=1;RPP=3.0103;RPPR=14.1779;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=7.97367;DPRA=0.0;ODDS=1.23446;GTI=0;TYPE=del;CIGAR=1M3D24M;NUMALT=5;MEANALT=13.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:5.42912:28:12:426:1:15:-2.12823,-11.6282,-127.128:1:5:22:.:.:1:.:.:.:-0.480745	./1:10.9561:55:16:583:3:90:-4.90344,-18.2105,-242.712:3:7:42:.:.:1:.:.:.:-0.0152891
chr13	41226452	.	A	G	11.015	REJECT	NS=2;DP=83;DPB=149.679;AC=2;AN=2;AF=0.0;RO=28;AO=3;PRO=40.1;PAO=29.8;QR=1009;QA=42;PQR=1413.88;PQA=1055.38;SRF=6;SRR=22;SAF=3;SAR=0;SRP=22.8638;SAP=9.52472;AB=0.0545455;ABP=97.8049;RUN=1;RPP=3.73412;RPPR=14.1779;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=7.97367;DPRA=0.0;ODDS=1.23446;GTI=0;TYPE=snp;CIGAR=26M1X1M;NUMALT=5;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:5.42912:28:12:426:0:0:-2.12823,-18.9424,-189.682:0:0:22:.:.:1:.:.:.:-0.480745	./1:10.9561:55:16:583:3:42:-4.90344,-59.6475,-678.833:3:7:42:.:.:1:.:.:.:-0.0152891
chr13	41226485	.	A	C	2590.44	REJECT	NS=2;DP=136;DPB=154.0;AC=3;AN=4;AF=0.75;RO=51;AO=102;PRO=0.0;PAO=0.0;QR=1899;QA=3680;PQR=0.0;PQA=0.0;SRF=16;SRR=35;SAF=29;SAR=73;SRP=18.3809;SAP=44.2257;AB=0.571429;ABP=8.28388;RUN=1;RPP=33.7515;RPPR=10.206;RPL=32.0;RPR=70.0;EPP=4.37279;EPPR=8.16222;DPRA=0.0;ODDS=22.1991;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.4314;MQMR=60.0;PAIRED=0.960784;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.507;Dels=0.0;FS=0.8305;HaplotypeScore=7.7875;MLEAC=1;MLEAF=0.75;MQ=59.67;MQRankSum=1.785;QD=26.6;ReadPosRankSum=0.158;SOR=1.18	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:94.7047:33:0:0:34:1235:-111.224,-9.21498,0.0:32:100:32:0,31:1281,93,0:1:.:1:.:.:.:-0.480745	0/1:121.76:119:51:1899:68:2445:-187.84,0.0,-138.719:68:57:119:51,68:2345,0,1778:.:1:1:.:.:.:-0.0152891
chr13	41226561	.	C	G	2681.895	REJECT	NS=2;DP=122;DPB=141.0;AC=3;AN=4;AF=0.75;RO=37;AO=104;PRO=0.0;PAO=0.0;QR=1362;QA=3810;PQR=0.0;PQA=0.0;SRF=22;SRR=15;SAF=71;SAR=33;SRP=5.88603;SAP=33.1604;AB=0.644231;ABP=21.8019;RUN=1;RPP=17.1249;RPPR=5.88603;RPL=39.0;RPR=65.0;EPP=51.1168;EPPR=3.06899;DPRA=0.0;ODDS=24.1029;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990385;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.591;Dels=0.0;FS=2.787;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.799;QD=25.395;ReadPosRankSum=-2.168;SOR=1.3785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:101.8385:37:0:0:37:1385:-124.912,-10.0418,0.0:37:100:37:0,37:1549,111,0:1:.:1:.:.:.:-0.480745	0/1:122.3495:104:37:1362:67:2425:-190.502,0.0,-94.4496:67:64:104:37,67:2384,0,1231:.:1:1:.:.:.:-0.0152891
chr13	41227108	.	C	CT	336.667	REJECT	NS=2;DP=262;DPB=346.778;AC=2;AN=4;AF=0.5;RO=200;AO=34;PRO=70.1667;PAO=47.1667;QR=7426;QA=1171;PQR=2493.5;PQA=1650.5;SRF=50;SRR=150;SAF=7;SAR=27;SRP=111.584;SAP=28.557;AB=0.129771;ABP=314.94;RUN=1;RPP=28.557;RPPR=42.0968;RPL=27.0;RPR=7.0;EPP=15.5282;EPPR=3.70517;DPRA=0.0;ODDS=4.46273;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:19.4311:80:63:2297:7:249:-4.15576,0.0,-213.02:7:9:75:.:.:1:.:.:.:-0.480745	0/1:141.552:182:137:5129:27:922:-40.9329,0.0,-470.85:27:16:174:.:.:1:.:.:.:-0.0152891
chr13	41227108	.	CT	C	336.667	REJECT	NS=2;DP=262;DPB=346.778;AC=2;AN=2;AF=0.0;RO=200;AO=15;PRO=70.1667;PAO=37.6667;QR=7426;QA=539;PQR=2493.5;PQA=1341.0;SRF=50;SRR=150;SAF=3;SAR=12;SRP=111.584;SAP=14.7363;AB=0.0572519;ABP=449.107;RUN=1;RPP=4.31318;RPPR=42.0968;RPL=9.0;RPR=6.0;EPP=3.15506;EPPR=3.70517;DPRA=0.0;ODDS=4.46273;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.4311:80:63:2297:5:164:-4.15576,-7.40166,-263.004:5:7:75:.:.:1:.:.:.:-0.480745	./1:141.552:182:137:5129:10:375:-40.9329,-54.0783,-586.691:10:6:174:.:.:1:.:.:.:-0.0152891
chr13	41227865	.	G	A	11186.75	REJECT	NS=2;DP=463;DPB=522.0;AC=3;AN=4;AF=0.75;RO=139;AO=383;PRO=0.0;PAO=0.0;QR=5303;QA=14706;PQR=0.0;PQA=0.0;SRF=64;SRR=75;SAF=193;SAR=190;SRP=4.90057;SAP=3.06133;AB=0.657635;ABP=90.6394;RUN=1;RPP=5.51061;RPPR=4.90057;RPL=202.0;RPR=181.0;EPP=5.05704;EPPR=3.02592;DPRA=0.0;ODDS=73.2589;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989556;PAIREDR=0.992806;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.366;Dels=0.0;FS=1.2895;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.409;QD=28.245;ReadPosRankSum=0.799;SOR=0.642	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.4745:113:0:0:116:4341:-390.65,-31.39,0.0:113:100:113:0,110:4492,330,0:1:.:1:.:.:.:-0.480745	0/1:120.4745:405:139:5303:267:10365:-822.224,0.0,-366.987:266:66:405:138,266:10338,0,4661:.:1:1:.:.:.:-0.0152891
chr13	41228210	.	T	A	9459.985	REJECT	NS=2;DP=406;DPB=466.0;AC=3;AN=4;AF=0.75;RO=124;AO=342;PRO=0.0;PAO=0.0;QR=4737;QA=12879;PQR=0.0;PQA=0.0;SRF=61;SRR=63;SAF=160;SAR=182;SRP=3.08035;SAP=6.08338;AB=0.642651;ABP=64.3434;RUN=1;RPP=7.30245;RPPR=10.015;RPL=184.0;RPR=158.0;EPP=16.4455;EPPR=6.44263;DPRA=0.0;ODDS=74.2921;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994152;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.148;Dels=0.0;FS=0.6695;HaplotypeScore=7.7321;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.015;QD=25.885;ReadPosRankSum=1.086;SOR=0.819	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:117:0:0:119:4444:-399.561,-31.8387,0.0:117:100:117:0,116:4695,348,0:1:.:1:.:.:.:-0.480745	0/1:129.501:347:124:4737:223:8435:-664.711,0.0,-332.127:223:64:347:124,223:8386,0,4267:.:1:1:.:.:.:-0.0152891
chr13	41228392	.	G	A	3587.4700000000003	REJECT	NS=2;DP=156;DPB=173.0;AC=3;AN=4;AF=0.75;RO=49;AO=124;PRO=0.0;PAO=0.0;QR=1854;QA=4719;PQR=0.0;PQA=0.0;SRF=1;SRR=48;SAF=21;SAR=103;SRP=100.904;SAP=120.76;AB=0.65493;ABP=32.6157;RUN=1;RPP=25.7057;RPPR=3.40914;RPL=80.0;RPR=44.0;EPP=6.44263;EPPR=4.11819;DPRA=0.0;ODDS=20.3618;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6129;MQMR=60.0;PAIRED=0.983871;PAIREDR=0.938776;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.346;Dels=0.0;FS=9.6745;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=59.85;MQRankSum=-1.677;QD=25.86;ReadPosRankSum=-2.197;SOR=1.5465	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:90.7152:31:0:0:31:1182:-106.652,-8.41707,0.0:31:100:31:0,31:1318,93,0:1:.:1:.:.:.:-0.480745	0/1:119.975:141:49:1854:93:3537:-279.611,0.0,-128.357:93:65:141:47,93:3547,0,1546:.:1:1:.:.:.:-0.0152891
chr13	41228459	.	TAAAAAAAAAAAA	T	263.256	REJECT	SOMATIC;NS=2;DP=33;DPB=51.9756;AC=1;AN=3;AF=0.0;RO=0;AO=1;PRO=24.6405;PAO=17.6405;QR=0;QA=16;PQR=846.236;PQA=602.236;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=del;CIGAR=1M12D28M;NUMALT=6;MEANALT=6.0;LEN=12;MQM=42.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:36.7822:12:0:0:1:16:-14.8444,-13.6726,-13.4108:1:8:12:.:.:.:.:.:.:-0.480745	./1:130.373:21:0:0:0:0:-16.9345,-18.8321,-38.7553:0:0:17:.:.:1:.:.:.:-0.0152891
chr13	41228459	.	TAAAAAAAAAAAAA	T	263.256	REJECT	NS=2;DP=33;DPB=51.9756;AC=2;AN=2;AF=0.25;RO=0;AO=4;PRO=24.6405;PAO=16.6405;QR=0;QA=104;PQR=846.236;PQA=571.236;SRF=0;SRR=0;SAF=1;SAR=3;SRP=0.0;SAP=5.18177;AB=0.121212;ABP=44.1367;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=3.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=del;CIGAR=1M13D27M;NUMALT=6;MEANALT=6.5;LEN=13;MQM=47.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:36.7822:12:0:0:3:73:-14.8444,-9.10667,-8.3025:3:25:12:.:.:1:.:.:.:-0.480745	./1:130.373:21:0:0:1:31:-16.9345,-17.4394,-47.0749:1:6:17:.:.:1:.:.:.:-0.0152891
chr13	41228459	.	TAAAAAAAAAAAAAA	T	263.256	REJECT	NS=2;DP=33;DPB=51.9756;AC=2;AN=3;AF=0.5;RO=0;AO=17;PRO=24.6405;PAO=15.3071;QR=0;QA=412;PQR=846.236;PQA=524.236;SRF=0;SRR=0;SAF=8;SAR=9;SRP=0.0;SAP=3.13803;AB=0.515152;ABP=3.0761;RUN=1;RPP=3.13803;RPPR=0.0;RPL=9.0;RPR=8.0;EPP=3.13803;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=del;CIGAR=1M14D26M;NUMALT=6;MEANALT=6.5;LEN=14;MQM=48.3529;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.207;FS=1.373;MLEAC=1;MLEAF=0.5;MQ=52.81;MQRankSum=-2.144;QD=9.39;RPA=30,16;RU=A;ReadPosRankSum=0.414;SOR=0.446;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:36.7822:12:0:0:5:125:-14.8444,-5.73772,-12.9413:5:42:12:.:.:.:.:1:.:.:.:-0.480745	0/1:114.6865:39:0:0:12:287:-16.9345,0.0,-52.4031:17:68:25:12,22:2841,0,1098:.:1:1:.:.:.:-0.0152891
chr13	41228459	.	TAAAAAAAAAAAAAAA	T	263.256	REJECT	SOMATIC;NS=2;DP=33;DPB=51.9756;AC=1;AN=3;AF=0.0;RO=0;AO=5;PRO=24.6405;PAO=14.5571;QR=0;QA=99;PQR=846.236;PQA=493.986;SRF=0;SRR=0;SAF=1;SAR=4;SRP=0.0;SAP=6.91895;AB=0.151515;ABP=37.8197;RUN=1;RPP=3.44459;RPPR=0.0;RPL=2.0;RPR=3.0;EPP=6.91895;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=del;CIGAR=1M15D25M;NUMALT=6;MEANALT=6.5;LEN=15;MQM=45.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:36.7822:12:0:0:1:16:-14.8444,-11.6002,-19.608:1:8:12:.:.:.:.:.:.:-0.480745	./1:130.373:21:0:0:4:83:-16.9345,-22.5144,-152.118:4:24:17:.:.:1:.:.:.:-0.0152891
chr13	41228473	.	AAAAAAAAAAAAAAAAAT	A	263.256	REJECT	SOMATIC;NS=2;DP=33;DPB=51.9756;AC=1;AN=3;AF=0.0;RO=0;AO=1;PRO=24.6405;PAO=5.85714;QR=0;QA=14;PQR=846.236;PQA=189.286;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=del;CIGAR=15M17D9M;NUMALT=6;MEANALT=6.0;LEN=17;MQM=40.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:36.7822:12:0:0:1:14:-14.8444,-31.505,-216.301:1:8:12:.:.:.:.:.:.:-0.480745	./1:130.373:21:0:0:0:0:-16.9345,-65.7108,-589.836:0:0:17:.:.:1:.:.:.:-0.0152891
chr13	41228475	.	AAAAAAAAAAAAAAATTA	TTT	263.256	REJECT	SOMATIC;NS=2;DP=33;DPB=51.9756;AC=1;AN=3;AF=0.0;RO=0;AO=1;PRO=24.6405;PAO=5.35714;QR=0;QA=14;PQR=846.236;PQA=170.786;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=8.5517;GTI=0;TYPE=complex;CIGAR=1M15D17M1X7M;NUMALT=6;MEANALT=6.0;LEN=26;MQM=47.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:36.7822:12:0:0:1:14:-14.8444,-34.7687,-260.266:1:8:12:.:.:.:.:.:.:-0.480745	./1:130.373:21:0:0:0:0:-16.9345,-67.3329,-606.037:0:0:17:.:.:1:.:.:.:-0.0152891
chr13	41228504	.	TGGTGGC	GGGGGGG	2997.03	REJECT	SOMATIC;NS=2;DP=124;DPB=130.143;AC=1;AN=3;AF=0.0;RO=13;AO=3;PRO=2.0;PAO=1.5;QR=377;QA=53;PQR=70.5;PQA=49.0;SRF=9;SRR=4;SAF=3;SAR=0;SRP=7.18621;SAP=9.52472;AB=0.0119048;ABP=176.831;RUN=1;RPP=3.73412;RPPR=7.18621;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=16.5402;DPRA=0.0;ODDS=18.3351;GTI=0;TYPE=complex;CIGAR=1X2M1X2M1X;NUMALT=2;MEANALT=4.5;LEN=7;MQM=48.3333;MQMR=56.3846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:89.4516:40:0:0:2:39:-121.48,-113.455,-112.386:2:5:40:.:.:.:.:.:.:-0.480745	./1:79.6283:84:13:377:1:14:-195.183,-187.518,-225.085:1:1:78:.:.:1:.:.:.:-0.0152891
chr13	41228510	.	C	G	2739.9	REJECT	NS=2;DP=108;DPB=130.143;AC=3;AN=4;AF=0.75;RO=13;AO=102;PRO=2.0;PAO=6.5;QR=377;QA=3495;PQR=70.5;PQA=232.5;SRF=9;SRR=4;SAF=60;SAR=42;SRP=7.18621;SAP=9.90792;AB=0.761905;ABP=53.0576;RUN=1;RPP=48.0577;RPPR=7.18621;RPL=28.0;RPR=74.0;EPP=65.0889;EPPR=16.5402;DPRA=0.0;ODDS=18.3351;GTI=0;TYPE=snp;CIGAR=6M1X;NUMALT=2;MEANALT=4.5;LEN=1;MQM=54.9706;MQMR=56.3846;PAIRED=0.990196;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=1;BaseQRankSum=1.46;Dels=0.0;FS=0.0;HaplotypeScore=19.242;MLEAC=1;MLEAF=0.75;MQ=55.925;MQRankSum=-0.647;QD=24.91;ReadPosRankSum=0.947;SOR=0.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:94.2258:38:0:0:38:1285:-121.48,-11.0298,0.0:37:97:38:0,36:1432,107,0:1:.:1:.:.:.:-0.480745	0/1:89.31415:88:13:377:64:2210:-195.183,0.0,-13.9774:70:83:85:15,77:2511,0,226:.:1:1:.:.:.:-0.0152891
chr13	41228637	.	CA	C	1099.23	PASS	DP=91;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.961;FS=6.6455;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.141;QD=12.24;RPA=15,14;RU=A;ReadPosRankSum=0.78;SOR=1.574;STR;ClippingRankSum=1.558	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:10,40:50:97.0:784,0,97:40:80:50:1:.:.:.:.:.:-0.480745	0/1:24,72:118:99.0:1489,0,139:72:75:96:.:1:.:.:.:.:-0.0152891
chr13	41228650	.	A	G	3982.6949999999997	REJECT	NS=2;DP=195;DPB=230.0;AC=3;AN=4;AF=0.75;RO=54;AO=176;PRO=0.0;PAO=0.0;QR=1900;QA=5868;PQR=0.0;PQA=0.0;SRF=35;SRR=19;SAF=117;SAR=59;SRP=13.3047;SAP=44.515;AB=0.685185;ABP=51.2652;RUN=1;RPP=136.457;RPPR=26.1727;RPL=36.0;RPR=140.0;EPP=3.05965;EPPR=4.45795;DPRA=0.0;ODDS=29.7781;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9716;MQMR=58.6481;PAIRED=0.960227;PAIREDR=0.962963;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.039;Dels=0.0;FS=3.0165;HaplotypeScore=23.3859;MLEAC=1;MLEAF=0.75;MQ=59.885;MQRankSum=-0.325;QD=22.935;ReadPosRankSum=1.4885;SOR=1.1915;ClippingRankSum=-1.253	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:113.781:66:3:63:65:2188:-191.177,-12.6711,0.0:64:97:66:1,64:2653,186,0:1:.:1:.:.:.:-0.480745	0/1:129.501:161:51:1837:111:3680:-287.362,0.0,-120.053:110:68:161:51,109:3449,0,1558:.:1:1:.:.:.:-0.0152891
chr13	41229485	.	C	A	78.1639	REJECT	NS=2;DP=103;DPB=182.5;AC=2;AN=2;AF=0.0;RO=29;AO=8;PRO=44.6167;PAO=19.7167;QR=976;QA=121;PQR=1503.65;PQA=651.767;SRF=20;SRR=9;SAF=1;SAR=7;SRP=12.0706;SAP=12.7819;AB=0.0776699;ABP=162.582;RUN=1;RPP=4.09604;RPPR=6.67934;RPL=3.0;RPR=5.0;EPP=3.0103;EPPR=4.88226;DPRA=0.0;ODDS=2.69455;GTI=0;TYPE=snp;CIGAR=1X29M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=59.875;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.901:27:4:133:1:14:-4.58335,-18.5105,-177.303:1:6:16:.:.:1:.:.:.:-0.480745	./1:73.398:76:25:843:7:107:-10.0257,-44.0087,-483.546:7:14:49:.:.:1:.:.:.:-0.0152891
chr13	41229485	.	C	CA	78.1639	REJECT	NS=2;DP=103;DPB=182.5;AC=2;AN=2;AF=0.0;RO=29;AO=4;PRO=44.6167;PAO=35.6167;QR=976;QA=98;PQR=1503.65;PQA=1215.65;SRF=20;SRR=9;SAF=2;SAR=2;SRP=12.0706;SAP=3.0103;AB=0.038835;ABP=193.278;RUN=1;RPP=5.18177;RPPR=6.67934;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=4.88226;DPRA=0.0;ODDS=2.69455;GTI=0;TYPE=ins;CIGAR=1M1I29M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.35;QD=4.6;SOR=1.329	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.9505:19:4:133:2:49:-4.58335,-2.06527,-15.2318:4:31:14:6,6:77,0,22:1:.:1:.:.:.:-0.480745	./1:73.398:76:25:843:2:49:-10.0257,-12.574,-104.158:2:4:49:.:.:.:.:1:.:.:.:-0.0152891
chr13	41229485	.	CA	C	78.1639	REJECT	NS=2;DP=103;DPB=182.5;AC=2;AN=4;AF=0.5;RO=29;AO=14;PRO=44.6167;PAO=27.7833;QR=976;QA=409;PQR=1503.65;PQA=936.817;SRF=20;SRR=9;SAF=11;SAR=3;SRP=12.0706;SAP=12.937;AB=0.135922;ABP=121.598;RUN=1;RPP=8.59409;RPPR=6.67934;RPL=4.0;RPR=10.0;EPP=12.937;EPPR=4.88226;DPRA=0.0;ODDS=2.69455;GTI=0;TYPE=del;CIGAR=1M1D28M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=62.1429;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.901:27:4:133:4:99:-4.58335,0.0,-32.0044:4:25:16:.:.:1:.:.:.:-0.480745	0/1:73.398:76:25:843:10:310:-10.0257,0.0,-154.373:10:20:49:.:.:1:.:.:.:-0.0152891
chr13	41229485	.	CAA	C	78.1639	REJECT	NS=2;DP=103;DPB=182.5;AC=2;AN=2;AF=0.0;RO=29;AO=7;PRO=44.6167;PAO=26.0333;QR=976;QA=184;PQR=1503.65;PQA=861.983;SRF=20;SRR=9;SAF=4;SAR=3;SRP=12.0706;SAP=3.32051;AB=0.0679612;ABP=170.003;RUN=1;RPP=5.80219;RPPR=6.67934;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=4.88226;DPRA=0.0;ODDS=2.69455;GTI=0;TYPE=del;CIGAR=1M2D27M;NUMALT=5;MEANALT=20.5;LEN=2;MQM=59.5714;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.901:27:4:133:3:52:-4.58335,-4.77854,-45.2735:3:19:16:.:.:1:.:.:.:-0.480745	./1:73.398:76:25:843:4:132:-10.0257,-19.7507,-277.11:4:8:49:.:.:1:.:.:.:-0.0152891
chr13	41229485	.	CAAAA	C	78.1639	REJECT	NS=2;DP=103;DPB=182.5;AC=2;AN=2;AF=0.0;RO=29;AO=3;PRO=44.6167;PAO=21.2333;QR=976;QA=103;PQR=1503.65;PQA=707.133;SRF=20;SRR=9;SAF=3;SAR=0;SRP=12.0706;SAP=9.52472;AB=0.0291262;ABP=201.373;RUN=1;RPP=3.73412;RPPR=6.67934;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=4.88226;DPRA=0.0;ODDS=2.69455;GTI=0;TYPE=del;CIGAR=1M4D25M;NUMALT=5;MEANALT=20.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.901:27:4:133:2:67:-4.58335,-6.68012,-82.146:2:13:16:.:.:1:.:.:.:-0.480745	./1:73.398:76:25:843:1:36:-10.0257,-42.5473,-418.189:1:2:49:.:.:1:.:.:.:-0.0152891
chr13	41229905	.	A	G	998.18	REJECT	NS=2;DP=65;DPB=76.0;AC=3;AN=4;AF=0.75;RO=22;AO=53;PRO=0.0;PAO=0.0;QR=761;QA=1638;PQR=0.0;PQA=0.0;SRF=11;SRR=11;SAF=29;SAR=24;SRP=3.0103;SAP=4.03458;AB=0.592593;ABP=7.03155;RUN=1;RPP=3.37904;RPPR=3.40511;RPL=25.0;RPR=28.0;EPP=7.96781;EPPR=4.58955;DPRA=0.0;ODDS=14.0535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.4;Dels=0.0;FS=0.0;HaplotypeScore=7.7433;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.924;QD=19.51;ReadPosRankSum=-1.047;SOR=1.2695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:60.01685:21:0:0:21:694:-62.7047,-5.6774,0.0:20:100:20:0,20:734,59,0:1:.:1:.:.:.:-0.480745	0/1:129.501:54:22:761:32:944:-70.4429,0.0,-54.0432:32:59:54:22,32:747,0,701:.:1:1:.:.:.:-0.0152891
chr13	41230062	.	C	T	1532.03	PASS	SOMATIC;NS=2;DP=197;DPB=197.0;AC=1;AN=3;AF=0.25;RO=139;AO=58;PRO=0.0;PAO=0.0;QR=5211;QA=2253;PQR=0.0;PQA=0.0;SRF=114;SRR=25;SAF=48;SAR=10;SRP=126.753;SAP=57.0725;AB=0.411348;ABP=12.6356;RUN=1;RPP=5.40641;RPPR=4.90057;RPL=25.0;RPR=33.0;EPP=8.40154;EPPR=11.2744;DPRA=2.51786;ODDS=35.8861;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982759;PAIREDR=0.985612;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.121;Dels=0.0;FS=0.888;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.552;QD=14.48;ReadPosRankSum=1.993;SOR=0.578	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:135.519:55:56:2090:0:0:0.0,-15.1592,-188.259:0:0:55:55,0:.:0.0:0:.:.:.:0:.:.:0:-0.480745	0/1:129.501:140:83:3121:58:2253:-164.553,0.0,-242.643:57:41:140:82,56:38.0:0.406:2:2055,0,3050:.:1:1:.:.:1:-0.0152891
chr13	41230141	.	T	C	7738.445000000001	REJECT	NS=2;DP=340;DPB=381.0;AC=3;AN=4;AF=0.75;RO=112;AO=269;PRO=0.0;PAO=0.0;QR=4407;QA=10286;PQR=0.0;PQA=0.0;SRF=68;SRR=44;SAF=162;SAR=107;SRP=14.1779;SAP=27.4293;AB=0.626667;ABP=44.8184;RUN=1;RPP=9.79918;RPPR=28.1373;RPL=120.0;RPR=149.0;EPP=3.01837;EPPR=3.32051;DPRA=0.0;ODDS=51.4803;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.814;Dels=0.0;FS=0.7375;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.413;QD=26.775;ReadPosRankSum=0.486;SOR=0.846	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.8145:80:0:0:81:3058:-275.304,-21.9317,0.0:80:100:80:0,79:3389,237,0:1:.:1:.:.:.:-0.480745	0/1:118.8145:300:112:4407:188:7228:-568.852,0.0,-315.132:188:63:300:112,188:7153,0,4050:.:1:1:.:.:.:-0.0152891
chr13	41230970	.	A	AT	143.548	REJECT	NS=2;DP=130;DPB=194.143;AC=2;AN=2;AF=0.0;RO=87;AO=15;PRO=51.3333;PAO=42.3333;QR=3207;QA=500;PQR=1827.33;PQA=1477.33;SRF=29;SRR=58;SAF=5;SAR=10;SRP=24.0012;SAP=6.62942;AB=0.115385;ABP=170.047;RUN=1;RPP=3.15506;RPPR=12.0207;RPL=7.0;RPR=8.0;EPP=10.1038;EPPR=8.62618;DPRA=0.0;ODDS=0.237129;GTI=1;TYPE=ins;CIGAR=1M1I20M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.7701;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.50848:35:27:987:2:71:-0.503485,-3.05788,-95.4684:2:6:32:.:.:1:.:.:.:-0.480745	./1:23.1436:95:60:2220:13:429:-18.6418,-1.53129,-199.252:13:15:86:.:.:1:.:.:.:-0.0152891
chr13	41230970	.	AT	A	143.548	REJECT	NS=2;DP=130;DPB=194.143;AC=2;AN=4;AF=0.5;RO=87;AO=16;PRO=51.3333;PAO=39.3333;QR=3207;QA=560;PQR=1827.33;PQA=1399.33;SRF=29;SRR=58;SAF=5;SAR=11;SRP=24.0012;SAP=7.89611;AB=0.123077;ABP=163.432;RUN=1;RPP=5.18177;RPPR=12.0207;RPL=6.0;RPR=10.0;EPP=3.55317;EPPR=8.62618;DPRA=0.0;ODDS=0.237129;GTI=1;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.7701;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2.50848:35:27:987:3:114:-0.503485,0.0,-98.4432:3:9:32:.:.:1:.:.:.:-0.480745	0/1:23.1436:95:60:2220:13:446:-18.6418,0.0,-223.219:13:15:86:.:.:1:.:.:.:-0.0152891
chr13	41231456	.	C	T	431.281	REJECT	NS=2;DP=89;DPB=143.292;AC=2;AN=2;AF=0.25;RO=19;AO=29;PRO=36.4167;PAO=12.0833;QR=665;QA=807;PQR=1286.25;PQA=302.25;SRF=5;SRR=14;SAF=0;SAR=29;SRP=12.2676;SAP=65.983;AB=0.325843;ABP=26.4573;RUN=1;RPP=19.8579;RPPR=44.2683;RPL=7.0;RPR=22.0;EPP=19.8579;EPPR=12.2676;DPRA=0.0;ODDS=3.41734;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=53.4828;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-3.832;Dels=0.03;FS=15.035;HaplotypeScore=42.869;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=-1.698;QD=1.25;ReadPosRankSum=1.031;SOR=4.384	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.8866:24:2:70:8:270:-23.4374,-12.5326,-130.029:8:40:20:.:.:.:.:1:.:.:.:-0.480745	./1:129.501:103:17:595:21:537:-30.4814,-36.3377,-608.225:24:29:98:113,28:210,0,2866:.:1:1:.:.:.:-0.0152891
chr13	41231456	.	C	CT	431.281	REJECT	NS=2;DP=89;DPB=143.292;AC=2;AN=3;AF=0.5;RO=19;AO=22;PRO=36.4167;PAO=38.4167;QR=665;QA=554;PQR=1286.25;PQA=1336.25;SRF=5;SRR=14;SAF=6;SAR=16;SRP=12.2676;SAP=12.8806;AB=0.247191;ABP=52.4174;RUN=1;RPP=12.8806;RPPR=44.2683;RPL=16.0;RPR=6.0;EPP=3.40511;EPPR=12.2676;DPRA=0.0;ODDS=3.41734;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.067;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.067;QD=5.3;ReadPosRankSum=-0.762;SOR=2.584;ClippingRankSum=-0.762	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.4433:19:2:70:9:195:-23.4374,-5.67648,-8.80718:9:54:17:5,9:141,0,28:1:.:1:.:.:.:-0.480745	0/1:160.002:65:17:595:13:359:-30.4814,0.0,-50.7293:13:23:56:.:.:.:.:1:.:.:.:-0.0152891
chr13	41231456	.	CT	C	431.281	REJECT	SOMATIC;NS=2;DP=89;DPB=143.292;AC=1;AN=3;AF=0.0;RO=19;AO=6;PRO=36.4167;PAO=28.0833;QR=665;QA=145;PQR=1286.25;PQA=971.25;SRF=5;SRR=14;SAF=1;SAR=5;SRP=12.2676;SAP=8.80089;AB=0.0674157;ABP=147.669;RUN=1;RPP=3.0103;RPPR=44.2683;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=12.2676;DPRA=0.0;ODDS=3.41734;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=8.5;LEN=1;MQM=56.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:14.8866:24:2:70:1:37:-23.4374,-20.2884,-42.8277:1:5:20:.:.:.:.:.:.:-0.480745	./1:160.002:65:17:595:5:108:-30.4814,-34.0378,-164.185:5:9:56:.:.:1:.:.:.:-0.0152891
chr13	41231542	.	A	G	1790.155	REJECT	NS=2;DP=77;DPB=90.0;AC=3;AN=4;AF=0.75;RO=18;AO=72;PRO=0.0;PAO=0.0;QR=651;QA=2465;PQR=0.0;PQA=0.0;SRF=8;SRR=10;SAF=33;SAR=39;SRP=3.49285;SAP=4.09604;AB=0.723077;ABP=31.1058;RUN=1;RPP=4.9405;RPPR=4.9405;RPL=40.0;RPR=32.0;EPP=4.09604;EPPR=3.0103;DPRA=0.0;ODDS=15.6383;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.459;Dels=0.0;FS=0.0;HaplotypeScore=5.7512;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.814;QD=23.605;ReadPosRankSum=1.356;SOR=0.8735	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:67.9581:24:0:0:25:837:-75.1716,-6.36565,0.0:24:100:24:0,23:881,68,0:1:.:1:.:.:.:-0.480745	0/1:129.501:65:18:651:47:1628:-129.047,0.0,-41.0565:47:72:65:18,47:1620,0,533:.:1:1:.:.:.:-0.0152891
chr13	41232340	.	G	A	2008.48	REJECT	NS=2;DP=351;DPB=400.0;AC=2;AN=4;AF=0.5;RO=307;AO=93;PRO=0.0;PAO=0.0;QR=11697;QA=3505;PQR=0.0;PQA=0.0;SRF=135;SRR=172;SAF=43;SAR=50;SRP=12.6935;SAP=4.15441;AB=0.2325;ABP=251.622;RUN=1;RPP=8.26386;RPPR=9.80765;RPL=39.0;RPR=54.0;EPP=3.59403;EPPR=13.7686;DPRA=0.0;ODDS=87.7174;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993485;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4995;Dels=0.0;FS=3.545;HaplotypeScore=8.8628;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.076;QD=11.625;ReadPosRankSum=-0.187;SOR=0.4135;ClippingRankSum=0.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:40:1511:57:2166:-168.691,0.0,-109.743:57:59:96:38,57:2068,0,1316:1:.:1:.:.:.:-0.480745	0/1:129.501:302:267:10186:36:1339:-38.4014,0.0,-834.15:36:12:302:266,36:566,0,10408:.:1:1:.:.:.:-0.0152891
chr13	41233345	.	G	A	422.186	REJECT	NS=2;DP=37;DPB=42.0;AC=3;AN=4;AF=0.75;RO=17;AO=25;PRO=0.0;PAO=0.0;QR=438;QA=722;PQR=0.0;PQA=0.0;SRF=15;SRR=2;SAF=25;SAR=0;SRP=24.5973;SAP=57.2971;AB=0.46875;ABP=3.28173;RUN=1;RPP=17.6895;RPPR=13.3567;RPL=6.0;RPR=19.0;EPP=17.6895;EPPR=13.3567;DPRA=0.0;ODDS=7.2239;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.12;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.359;Dels=0.0;FS=1.5675;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.75;MQ=59.095;MQRankSum=-1.133;QD=21.315;ReadPosRankSum=0.604;SOR=2.7805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:21.6881:7:0:0:10:274:-24.8089,-2.71133,0.0:7:100:7:0,4:146,12,0:1:.:1:.:.:.:-0.480745	0/1:129.501:32:17:438:15:448:-31.6069,0.0,-30.868:15:47:32:17,15:448,0,308:.:1:1:.:.:.:-0.0152891
chr13	41233451	.	C	CA	80.8395	REJECT	NS=2;DP=44;DPB=133.429;AC=2;AN=2;AF=0.0;RO=4;AO=3;PRO=42.9;PAO=41.9;QR=135;QA=90;PQR=1525.02;PQA=1466.52;SRF=4;SRR=0;SAF=3;SAR=0;SRP=11.6962;SAP=9.52472;AB=0.0833333;ABP=57.2971;RUN=1;RPP=9.52472;RPPR=5.18177;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=5.18177;DPRA=0.0;ODDS=2.0859;GTI=0;TYPE=ins;CIGAR=1M1I41M;NUMALT=4;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.10014:8:1:28:0:0:-1.89232,-2.16316,-4.41645:0:0:2:.:.:1:.:.:.:-0.480745	./1:12.3593:36:3:107:3:90:-10.8814,-0.81017,-13.9251:3:21:14:.:.:1:.:.:.:-0.0152891
chr13	41233451	.	C	CAA	80.8395	REJECT	NS=2;DP=44;DPB=133.429;AC=2;AN=4;AF=0.5;RO=4;AO=5;PRO=42.9;PAO=41.9;QR=135;QA=129;PQR=1525.02;PQA=1466.52;SRF=4;SRR=0;SAF=3;SAR=2;SRP=11.6962;SAP=3.44459;AB=0.113636;ABP=60.0608;RUN=1;RPP=13.8677;RPPR=5.18177;RPL=0.0;RPR=5.0;EPP=3.44459;EPPR=5.18177;DPRA=0.0;ODDS=2.0859;GTI=0;TYPE=ins;CIGAR=1M2I41M;NUMALT=4;MEANALT=15.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.294;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=53.6;MQRankSum=-0.998;QD=3.93;RPA=17,19;RU=A;ReadPosRankSum=-1.262;SOR=0.816;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7.10014:8:1:28:1:27:-1.89232,0.0,-1.9826:1:50:2:.:.:.:.:1:.:.:.:-0.480745	0/1:55.67965:47:3:107:4:102:-10.8814,0.0,-12.8656:12:39:28:22,21:281,0,395:.:1:1:.:.:.:-0.0152891
chr13	41233451	.	CA	C	80.8395	REJECT	NS=2;DP=44;DPB=133.429;AC=2;AN=2;AF=0.0;RO=4;AO=2;PRO=42.9;PAO=38.9;QR=135;QA=66;PQR=1525.02;PQA=1382.35;SRF=4;SRR=0;SAF=1;SAR=1;SRP=11.6962;SAP=3.0103;AB=0.0555556;ABP=64.7766;RUN=1;RPP=7.35324;RPPR=5.18177;RPL=0.0;RPR=2.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=2.0859;GTI=0;TYPE=del;CIGAR=1M1D40M;NUMALT=4;MEANALT=24.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.10014:8:1:28:0:0:-1.89232,-3.79056,-22.2111:0:0:2:.:.:1:.:.:.:-0.480745	./1:12.3593:36:3:107:2:66:-10.8814,-9.40481,-40.0422:2:14:14:.:.:1:.:.:.:-0.0152891
chr13	41233451	.	CAAAA	C	80.8395	REJECT	NS=2;DP=44;DPB=133.429;AC=2;AN=2;AF=0.0;RO=4;AO=2;PRO=42.9;PAO=37.4;QR=135;QA=48;PQR=1525.02;PQA=1329.6;SRF=4;SRR=0;SAF=1;SAR=1;SRP=11.6962;SAP=3.0103;AB=0.0555556;ABP=64.7766;RUN=1;RPP=3.0103;RPPR=5.18177;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=5.18177;DPRA=0.0;ODDS=2.0859;GTI=0;TYPE=del;CIGAR=1M4D37M;NUMALT=4;MEANALT=24.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:7.10014:8:1:28:0:0:-1.89232,-3.79056,-22.2111:0:0:2:.:.:1:.:.:.:-0.480745	./1:12.3593:36:3:107:2:48:-10.8814,-17.5263,-117.643:2:14:14:.:.:1:.:.:.:-0.0152891
chr13	41233469	.	G	A	162.77	PASS	SOMATIC;DP=128;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.044;Dels=0.02;FS=6.75;HaplotypeScore=28.275;MLEAC=1;MLEAF=0.5;MQ=56.61;MQRankSum=-3.209;QD=1.27;ReadPosRankSum=-0.478;SOR=2.142	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.480745	0/1:108,15:126:99.0:191,0,2710:15:12:123:.:1:.:.:.:.:-0.0152891
chr13	41233505	.	G	C	5282.73	REJECT	NS=2;DP=256;DPB=297.0;AC=3;AN=4;AF=0.75;RO=88;AO=207;PRO=0.0;PAO=0.0;QR=2985;QA=7721;PQR=0.0;PQA=0.0;SRF=62;SRR=26;SAF=163;SAR=44;SRP=34.9902;SAP=151.562;AB=0.6;ABP=22.5536;RUN=1;RPP=261.583;RPPR=28.2783;RPL=25.0;RPR=182.0;EPP=78.802;EPPR=6.56362;DPRA=0.0;ODDS=45.8119;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.7343;MQMR=59.2841;PAIRED=0.937198;PAIREDR=0.965909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.27;Dels=0.0;FS=6.1475;HaplotypeScore=43.4575;MLEAC=1;MLEAF=0.75;MQ=59.805;MQRankSum=1.02;QD=26.935;ReadPosRankSum=0.026;SOR=2.1985	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.778:68:0:0:72:2675:-240.613,-19.4699,0.0:68:100:68:0,64:2599,191,0:1:.:1:.:.:.:-0.480745	0/1:125.778:220:88:2985:135:5046:-394.092,0.0,-208.581:131:60:218:85,128:4828,0,2419:.:1:1:.:.:.:-0.0152891
chr13	41233601	.	A	AT	200.988	REJECT	NS=2;DP=305;DPB=363.0;AC=2;AN=2;AF=0.0;RO=232;AO=24;PRO=52.6667;PAO=40.6667;QR=8637;QA=806;PQR=1861.67;PQA=1424.67;SRF=117;SRR=115;SAF=11;SAR=13;SRP=3.04774;SAP=3.37221;AB=0.0786885;ABP=473.252;RUN=1;RPP=4.45795;RPPR=6.75422;RPL=14.0;RPR=10.0;EPP=3.37221;EPPR=3.04774;DPRA=0.0;ODDS=14.1757;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.958333;PAIREDR=0.956897;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:61.5626:78:58:2150:6:190:-10.1896,-5.48722,-192.428:6:8:73:.:.:1:.:.:.:-0.480745	./1:129.996:227:174:6487:18:616:-15.4313,-14.7384,-577.215:18:8:214:.:.:1:.:.:.:-0.0152891
chr13	41233601	.	AT	A	200.988	REJECT	NS=2;DP=305;DPB=363.0;AC=2;AN=4;AF=0.5;RO=232;AO=31;PRO=52.6667;PAO=36.6667;QR=8637;QA=1143;PQR=1861.67;PQA=1274.67;SRF=117;SRR=115;SAF=17;SAR=14;SRP=3.04774;SAP=3.64073;AB=0.101639;ABP=423.414;RUN=1;RPP=8.68415;RPPR=6.75422;RPL=11.0;RPR=20.0;EPP=3.64073;EPPR=3.04774;DPRA=0.0;ODDS=14.1757;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.6452;MQMR=60.0;PAIRED=0.967742;PAIREDR=0.956897;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.015;FS=2.963;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.568;QD=0.37;ReadPosRankSum=0.138;SOR=1.302;ClippingRankSum=-1.875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:65.7813:76:58:2150:9:327:-10.1896,0.0,-186.66:10:13:73:63,11:70,0,1336:1:.:1:.:.:.:-0.480745	0/1:129.996:227:174:6487:22:816:-15.4313,0.0,-586.906:22:10:214:.:.:.:.:1:.:.:.:-0.0152891
chr13	41233931	.	A	G	8845.585	REJECT	NS=2;DP=389;DPB=456.0;AC=3;AN=4;AF=0.75;RO=128;AO=328;PRO=0.0;PAO=0.0;QR=4936;QA=12487;PQR=0.0;PQA=0.0;SRF=55;SRR=73;SAF=148;SAR=180;SRP=8.50684;SAP=9.78953;AB=0.604938;ABP=34.0007;RUN=1;RPP=3.96363;RPPR=6.33537;RPL=170.0;RPR=158.0;EPP=3.96363;EPPR=4.09604;DPRA=0.0;ODDS=83.2021;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981707;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.861;Dels=0.0;FS=0.678;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.561;QD=27.45;ReadPosRankSum=0.897;SOR=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:129:0:0:132:4960:-446.297,-35.7082,0.0:129:100:129:0,127:5072,381,0:1:.:1:.:.:.:-0.480745	0/1:129.501:323:128:4936:196:7527:-589.251,0.0,-356.21:195:60:323:128,195:7432,0,4560:.:1:1:.:.:.:-0.0152891
chr13	41234397	.	T	C	10312.635	REJECT	NS=2;DP=452;DPB=508.0;AC=3;AN=4;AF=0.75;RO=147;AO=358;PRO=0.0;PAO=0.0;QR=5683;QA=13766;PQR=0.0;PQA=0.0;SRF=71;SRR=76;SAF=171;SAR=187;SRP=3.3796;SAP=4.56308;AB=0.623116;ABP=55.4093;RUN=1;RPP=4.97554;RPPR=4.7977;RPL=188.0;RPR=170.0;EPP=4.56308;EPPR=7.27939;DPRA=0.0;ODDS=69.6039;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99162;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.567;Dels=0.0;FS=0.3905;HaplotypeScore=13.5079;MLEAC=1;MLEAF=0.75;MQ=59.985;MQRankSum=0.248;QD=25.965;ReadPosRankSum=1.384;SOR=0.7445	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:110:4224:-380.162,-29.8026,0.0:109:100:109:0,109:4654,328,0:1:.:1:.:.:.:-0.480745	0/1:129.501:397:147:5683:248:9542:-751.192,0.0,-404.144:247:63:394:147,246:9405,0,5210:.:1:1:.:.:.:-0.0152891
chr13	41235085	.	AAACAAC	A	2655.11	REJECT	NS=2;DP=125;DPB=210.261;AC=3;AN=4;AF=0.75;RO=27;AO=89;PRO=113.0;PAO=113.0;QR=1024;QA=3082;PQR=3980.0;PQA=3940.0;SRF=17;SRR=10;SAF=65;SAR=24;SRP=6.95112;SAP=44.0243;AB=0.613636;ABP=12.8806;RUN=1;RPP=8.49998;RPPR=5.02092;RPL=37.0;RPR=52.0;EPP=3.0347;EPPR=3.09072;DPRA=0.0;ODDS=23.9828;GTI=0;TYPE=del;CIGAR=1M6D39M;NUMALT=1;MEANALT=5.0;LEN=6;MQM=60.4045;MQMR=60.0;PAIRED=0.988764;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.135;FS=1.5135;MLEAC=1;MLEAF=0.75;MQ=60.405;MQRankSum=1.513;QD=23.24;RPA=13,11;RU=AAC;ReadPosRankSum=-0.341;SOR=1.6555;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:101.577:44:0:0:35:1238:-115.307,-9.98961,0.0:43:100:43:0,51:2187,154,0:1:.:1:.:.:.:-0.480745	0/1:118.1205:116:27:1024:54:1844:-160.058,0.0,-93.8176:57:66:87:33,61:4349,0,2126:.:1:1:.:.:.:-0.0152891
chr13	41235213	.	C	T	9950.685000000001	REJECT	NS=2;DP=430;DPB=498.0;AC=3;AN=4;AF=0.75;RO=137;AO=361;PRO=0.0;PAO=0.0;QR=5219;QA=13823;PQR=0.0;PQA=0.0;SRF=76;SRR=61;SAF=193;SAR=168;SRP=6.57659;SAP=6.76977;AB=0.62259;ABP=50.3939;RUN=1;RPP=6.19232;RPPR=4.29416;RPL=192.0;RPR=169.0;EPP=10.3789;EPPR=10.0002;DPRA=0.0;ODDS=85.2222;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9668;MQMR=60.0;PAIRED=0.99169;PAIREDR=0.992701;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.952;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.788;QD=26.63;ReadPosRankSum=1.884;SOR=0.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:133:0:0:135:5182:-466.32,-36.5855,0.0:133:100:133:0,132:5348,397,0:1:.:1:.:.:.:-0.480745	0/1:129.501:362:137:5219:226:8641:-678.879,0.0,-371.123:226:62:362:136,226:8552,0,4703:.:1:1:.:.:.:-0.0152891
chr13	41235418	.	C	CT	318.026	REJECT	NS=2;DP=246;DPB=305.125;AC=2;AN=4;AF=0.5;RO=177;AO=31;PRO=46.0;PAO=41.0;QR=6530;QA=943;PQR=1671.0;PQA=1462.0;SRF=54;SRR=123;SAF=8;SAR=23;SRP=61.4192;SAP=18.771;AB=0.126016;ABP=301.861;RUN=1;RPP=8.68415;RPPR=21.6702;RPL=20.0;RPR=11.0;EPP=3.64073;EPPR=23.6332;DPRA=0.0;ODDS=18.0607;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.967742;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-2.156;FS=1.446;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.296;QD=0.63;ReadPosRankSum=-0.025;SOR=0.32;ClippingRankSum=-2.291	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.71835:70:50:1874:10:256:-9.21676,0.0,-158.55:11:17:67:59,13:97,0,1299:1:.:1:.:.:.:-0.480745	0/1:160.002:177:127:4656:21:687:-29.6344,0.0,-402.006:21:13:160:.:.:.:.:1:.:.:.:-0.0152891
chr13	41235418	.	CT	C	318.026	REJECT	NS=2;DP=246;DPB=305.125;AC=2;AN=2;AF=0.0;RO=177;AO=15;PRO=46.0;PAO=33.0;QR=6530;QA=499;PQR=1671.0;PQA=1161.0;SRF=54;SRR=123;SAF=3;SAR=12;SRP=61.4192;SAP=14.7363;AB=0.0609756;ABP=414.849;RUN=1;RPP=6.62942;RPPR=21.6702;RPL=10.0;RPR=5.0;EPP=3.15506;EPPR=23.6332;DPRA=0.0;ODDS=18.0607;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.4367:69:50:1874:3:92:-9.21676,-16.9276,-187.678:3:5:63:.:.:1:.:.:.:-0.480745	./1:160.002:177:127:4656:12:407:-29.6344,-34.3871,-488.308:12:8:160:.:.:1:.:.:.:-0.0152891
chr13	41235587	.	C	T	892.502	REJECT	NS=2;DP=119;DPB=142.0;AC=2;AN=4;AF=0.5;RO=102;AO=40;PRO=0.0;PAO=0.0;QR=3835;QA=1491;PQR=0.0;PQA=0.0;SRF=48;SRR=54;SAF=21;SAR=19;SRP=3.7767;SAP=3.22745;AB=0.28169;ABP=61.793;RUN=1;RPP=4.96463;RPPR=3.09546;RPL=23.0;RPR=17.0;EPP=16.9077;EPPR=7.18293;DPRA=0.0;ODDS=46.8925;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.902;PAIRED=0.975;PAIREDR=0.980392;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1;Dels=0.0;FS=0.577;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.727;QD=11.54;ReadPosRankSum=-0.5285;SOR=0.6755;ClippingRankSum=-0.08	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:45:19:704:26:960:-74.3366,0.0,-51.2546:26:58:45:19,26:935,0,650:1:.:1:.:.:.:-0.480745	0/1:129.501:97:83:3131:14:531:-21.5248,0.0,-255.553:14:14:97:83,14:312,0,3201:.:1:1:.:.:.:-0.0152891
chr13	41238944	.	ACGCCAC	A	2037.39	REJECT	NS=2;DP=116;DPB=137.385;AC=3;AN=4;AF=0.5;RO=34;AO=79;PRO=36.8333;PAO=26.8333;QR=1282;QA=2718;PQR=1331.83;PQA=953.333;SRF=12;SRR=22;SAF=28;SAR=51;SRP=9.39698;SAP=17.5509;AB=0.681034;ABP=36.0317;RUN=1;RPP=3.25768;RPPR=3.26577;RPL=38.0;RPR=41.0;EPP=3.69747;EPPR=5.30951;DPRA=0.0;ODDS=7.74891;GTI=0;TYPE=del;CIGAR=1M6D19M;NUMALT=2;MEANALT=2.0;LEN=6;MQM=60.2532;MQMR=60.0;PAIRED=0.974684;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=41238950;HOMLEN=22;HOMSEQ=CGCCACCGCCACCGCCACCGCC;SVLEN=-6;SVTYPE=DEL;BaseQRankSum=1.177;FS=0.431;MLEAC=1;MLEAF=0.75;MQ=60.09;MQRankSum=1.359;QD=24.54;RPA=4,3;RU=CGCCAC;ReadPosRankSum=1.359;SOR=1.014;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:66.32745:36:0:0:32:1033:-86.5794,-3.77156,-13.0071:37:94:37:4,47:1667,112,0:1:.:1:1:.:.:-0.480745	0/1:117.7925:99:34:1282:47:1685:-124.56,0.0,-153.545:47:57:81:47,63:3435,0,2538:.:1:1:1:.:.:-0.0152891
chr13	41238967	.	AC	CG	2037.39	REJECT	NS=2;DP=116;DPB=137.385;AC=2;AN=2;AF=0.25;RO=34;AO=2;PRO=36.8333;PAO=18.3333;QR=1282;QA=78;PQR=1331.83;PQA=635.833;SRF=12;SRR=22;SAF=1;SAR=1;SRP=9.39698;SAP=3.0103;AB=0.0571429;ABP=62.6327;RUN=1;RPP=7.35324;RPPR=3.26577;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=5.30951;DPRA=0.0;ODDS=7.74891;GTI=0;TYPE=mnp;CIGAR=23M2X1M;NUMALT=2;MEANALT=3.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.970588;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:33.6549:35:0:0:2:78:-86.5794,-82.8079,-113.439:2:6:34:.:.:1:.:.:.:-0.480745	./1:136.585:81:34:1282:0:0:-124.56,-147.057,-405.095:0:0:81:.:.:1:.:.:.:-0.0152891
chr13	41239178	.	A	C	3883.4849999999997	REJECT	NS=2;DP=185;DPB=212.0;AC=3;AN=4;AF=0.75;RO=67;AO=145;PRO=0.0;PAO=0.0;QR=2576;QA=5465;PQR=0.0;PQA=0.0;SRF=43;SRR=24;SAF=77;SAR=68;SRP=14.7103;SAP=4.22333;AB=0.578616;ABP=11.546;RUN=1;RPP=6.37983;RPPR=3.82055;RPL=65.0;RPR=80.0;EPP=6.37983;EPPR=5.63551;DPRA=0.0;ODDS=33.2072;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.123;Dels=0.0;FS=4.9545;HaplotypeScore=4.913;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.327;QD=24.91;ReadPosRankSum=-0.633;SOR=0.7565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.179:52:0:0:53:2019:-181.531,-13.9957,0.0:52:100:52:0,51:2143,153,0:1:.:1:.:.:.:-0.480745	0/1:126.6315:159:67:2576:92:3446:-266.994,0.0,-189.104:92:58:159:67,92:3372,0,2410:.:1:1:.:.:.:-0.0152891
chr13	42701717	.	A	G	1248.175	REJECT	NS=2;DP=304;DPB=344.0;AC=2;AN=4;AF=0.5;RO=276;AO=67;PRO=0.0;PAO=0.0;QR=10624;QA=2511;PQR=0.0;PQA=0.0;SRF=109;SRR=167;SAF=24;SAR=43;SRP=29.4771;SAP=14.7103;AB=0.194767;ABP=281.388;RUN=1;RPP=5.63551;RPPR=39.3903;RPL=38.0;RPR=29.0;EPP=10.3026;EPPR=14.3712;DPRA=0.0;ODDS=69.5768;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.56;Dels=0.0;FS=1.279;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6945;QD=8.655;ReadPosRankSum=0.7875;SOR=0.814;ClippingRankSum=1.129	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.283:80:43:1661:37:1361:-100.857,0.0,-127.882:37:46:80:43,37:1269,0,1473:1:.:1:.:.:.:-3.56049e-05	0/1:122.283:264:233:8963:30:1150:-32.1918,0.0,-735.008:30:11:263:233,30:504,0,9265:.:1:1:.:.:.:-0.0152891
chr13	42701739	.	A	T	8058.5650000000005	REJECT	NS=2;DP=216;DPB=248.0;AC=4;AN=4;AF=1.0;RO=0;AO=248;PRO=0.0;PAO=0.0;QR=0;QA=9494;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=89;SAR=159;SRP=0.0;SAP=45.9144;AB=0.0;ABP=0.0;RUN=1;RPP=174.627;RPPR=0.0;RPL=194.0;RPR=54.0;EPP=4.72646;EPPR=0.0;DPRA=0.0;ODDS=44.2566;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9552;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.465;SOR=1.446	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.251:64:0:0:64:2425:-218.408,-17.3453,0.0:64:100:64:0,64:2708,192,0:1:.:1:.:.:.:-3.56049e-05	1/1:122.251:184:0:0:184:7069:-635.949,-49.8298,0.0:184:100:184:0,184:7867,542,0:.:1:1:.:.:.:-0.0152891
chr13	42703682	.	T	C	7037.41	REJECT	NS=2;DP=318;DPB=358.0;AC=3;AN=4;AF=0.75;RO=102;AO=256;PRO=0.0;PAO=0.0;QR=3930;QA=9493;PQR=0.0;PQA=0.0;SRF=75;SRR=27;SAF=178;SAR=78;SRP=52.06;SAP=87.8334;AB=0.634409;ABP=46.79;RUN=1;RPP=27.7447;RPPR=4.37279;RPL=101.0;RPR=155.0;EPP=7.11574;EPPR=22.1704;DPRA=0.0;ODDS=50.1624;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992188;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.708;Dels=0.0;FS=1.525;HaplotypeScore=6.8965;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.03;QD=27.51;ReadPosRankSum=1.784;SOR=1.126	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:2907:-261.693,-21.3593,0.0:78:100:78:0,77:3091,229,0:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:278:102:3930:177:6586:-516.863,0.0,-278.001:176:63:278:102,176:6491,0,3598:.:1:1:.:.:.:-0.0152891
chr13	42729441	.	C	T	5288.555	REJECT	NS=2;DP=302;DPB=349.0;AC=2;AN=4;AF=0.5;RO=160;AO=189;PRO=0.0;PAO=0.0;QR=6174;QA=7343;PQR=0.0;PQA=0.0;SRF=104;SRR=56;SAF=125;SAR=64;SRP=34.2795;SAP=45.7619;AB=0.541547;ABP=8.24299;RUN=1;RPP=10.1911;RPPR=29.2851;RPL=82.0;RPR=107.0;EPP=14.0515;EPPR=20.5992;DPRA=0.0;ODDS=247.396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7735;Dels=0.0;FS=1.524;HaplotypeScore=5.8956;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4625;QD=20.775;ReadPosRankSum=1.4295;SOR=0.6965;ClippingRankSum=-2.005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:38:1492:55:2156:-168.858,0.0,-109.085:55:59:93:38,55:2062,0,1357:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:256:122:4682:134:5187:-397.236,0.0,-351.801:134:52:256:122,134:5066,0,4476:.:1:1:.:.:.:-0.0152891
chr13	42764564	.	C	G	5591.07	REJECT	NS=2;DP=349;DPB=398.0;AC=2;AN=4;AF=0.5;RO=199;AO=198;PRO=0.0;PAO=0.0;QR=7579;QA=7643;PQR=0.0;PQA=0.0;SRF=138;SRR=61;SAF=126;SAR=72;SRP=67.7071;SAP=34.9902;AB=0.497487;ABP=3.03212;RUN=1;RPP=3.05417;RPPR=3.89417;RPL=100.0;RPR=98.0;EPP=10.424;EPPR=7.82246;DPRA=0.0;ODDS=293.639;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994949;PAIREDR=0.98995;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.599;Dels=0.0;FS=7.273;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.0925;QD=18.37;ReadPosRankSum=-0.405;SOR=0.711;ClippingRankSum=0.632	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9835:97:46:1734:51:1958:-149.959,0.0,-129.817:51:53:97:46,51:1820,0,1567:1:.:1:.:.:.:-3.56049e-05	0/1:118.9835:300:153:5845:147:5685:-430.086,0.0,-444.493:147:49:299:152,147:5510,0,5601:.:1:1:.:.:.:-0.0152891
chr13	42772717	.	G	T	5181.91	REJECT	NS=2;DP=326;DPB=373.0;AC=2;AN=4;AF=0.5;RO=187;AO=186;PRO=0.0;PAO=0.0;QR=6765;QA=7011;PQR=0.0;PQA=0.0;SRF=47;SRR=140;SAF=67;SAR=119;SRP=103.444;SAP=34.5784;AB=0.49866;ABP=3.01612;RUN=1;RPP=34.5784;RPPR=10.2679;RPL=119.0;RPR=67.0;EPP=3.43058;EPPR=7.20229;DPRA=0.0;ODDS=273.41;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1075;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8075;Dels=0.0;FS=9.355;HaplotypeScore=37.6512;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4035;QD=16.545;ReadPosRankSum=0.1645;SOR=0.2755;ClippingRankSum=0.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:50:1871:44:1632:-121.441,0.0,-142.983:43:47:92:48,42:1315,0,1706:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:279:137:4894:142:5379:-409.157,0.0,-365.095:142:51:279:137,142:5270,0,4502:.:1:1:.:.:.:-0.0152891
chr13	42793479	.	G	A	5465.8	REJECT	NS=2;DP=335;DPB=381.0;AC=2;AN=4;AF=0.5;RO=188;AO=193;PRO=0.0;PAO=0.0;QR=7111;QA=7430;PQR=0.0;PQA=0.0;SRF=73;SRR=115;SAF=76;SAR=117;SRP=23.3852;SAP=21.9235;AB=0.506562;ABP=3.15279;RUN=1;RPP=3.92164;RPPR=4.16534;RPL=101.0;RPR=92.0;EPP=16.793;EPPR=14.8379;DPRA=0.0;ODDS=294.111;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.404;Dels=0.0;FS=4.412;HaplotypeScore=3.9236;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.233;QD=18.11;ReadPosRankSum=1.427;SOR=0.9155;ClippingRankSum=-0.137	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:44:1708:48:1862:-142.678,0.0,-128.81:48:52:92:44,48:1650,0,1512:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:289:144:5403:145:5568:-422.595,0.0,-407.734:145:50:289:144,145:5401,0,5117:.:1:1:.:.:.:-0.0152891
chr13	42803341	.	T	C	9240.73	REJECT	NS=2;DP=247;DPB=284.0;AC=4;AN=4;AF=1.0;RO=0;AO=284;PRO=0.0;PAO=0.0;QR=0;QA=10864;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=69;SAR=215;SRP=0.0;SAP=165.993;AB=0.0;ABP=0.0;RUN=1;RPP=40.4758;RPPR=0.0;RPL=177.0;RPR=107.0;EPP=3.49965;EPPR=0.0;DPRA=0.0;ODDS=49.9136;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985915;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.41;SOR=2.3195	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:72:0:0:73:2797:-251.887,-19.8021,0.0:72:100:72:0,71:3011,214,0:1:.:1:.:.:.:-3.56049e-05	1/1:129.501:210:0:0:211:8067:-725.716,-57.1508,0.0:210:100:210:0,210:8982,623,0:.:1:1:.:.:.:-0.0152891
chr13	48797661	.	T	C	1456.425	REJECT	NS=2;DP=341;DPB=391.0;AC=2;AN=4;AF=0.5;RO=309;AO=82;PRO=0.0;PAO=0.0;QR=11943;QA=3098;PQR=0.0;PQA=0.0;SRF=141;SRR=168;SAF=46;SAR=36;SRP=8.13329;SAP=5.65844;AB=0.209719;ABP=289.184;RUN=1;RPP=6.82362;RPPR=6.7278;RPL=35.0;RPR=47.0;EPP=3.0103;EPPR=7.40244;DPRA=0.0;ODDS=147.421;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8955;Dels=0.0;FS=7.187;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.286;QD=8.015;ReadPosRankSum=0.9775;SOR=0.8085;ClippingRankSum=-0.58	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.474:97:59:2221:40:1492:-107.477,0.0,-173.121:38:39:97:59,37:1274,0,2012:1:.:1:.:.:.:-3.56049e-05	0/1:117.474:291:250:9722:42:1606:-65.3413,0.0,-795.359:42:14:291:249,42:917,0,9979:.:1:1:.:.:.:-0.0152891
chr13	48919358	.	T	G	8654.16	REJECT	NS=2;DP=231;DPB=266.0;AC=4;AN=4;AF=1.0;RO=0;AO=266;PRO=0.0;PAO=0.0;QR=0;QA=10153;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=82;SAR=184;SRP=0.0;SAP=87.9426;AB=0.0;ABP=0.0;RUN=1;RPP=112.857;RPPR=0.0;RPL=191.0;RPR=75.0;EPP=5.10014;EPPR=0.0;DPRA=0.0;ODDS=46.7255;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996241;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9993;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.945;SOR=1.7635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.503:67:0:0:68:2532:-228.018,-18.4176,0.0:67:100:67:0,67:2676,201,0:1:.:1:.:.:.:-3.56049e-05	1/1:122.503:197:0:0:198:7621:-685.575,-53.6194,0.0:197:100:197:0,197:8442,581,0:.:1:1:.:.:.:-0.0152891
chr13	48934289	.	T	C	1359.25	REJECT	NS=2;DP=216;DPB=252.0;AC=2;AN=4;AF=0.5;RO=190;AO=62;PRO=0.0;PAO=0.0;QR=7363;QA=2381;PQR=0.0;PQA=0.0;SRF=84;SRR=106;SAF=29;SAR=33;SRP=8.54184;SAP=3.57068;AB=0.246032;ABP=144.19;RUN=1;RPP=48.4011;RPPR=151.539;RPL=49.0;RPR=13.0;EPP=3.15039;EPPR=10.7362;DPRA=0.0;ODDS=61.3717;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994737;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.74;Dels=0.0;FS=8.039;HaplotypeScore=3.8882;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7565;QD=11.25;ReadPosRankSum=0.7805;SOR=0.935;ClippingRankSum=0.481	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:70:31:1194:40:1527:-118.254,0.0,-88.2745:40:56:70:30,40:1495,0,1041:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:181:159:6169:22:854:-27.778,0.0,-505.962:22:12:181:159,22:414,0,6383:.:1:1:.:.:.:-0.0152891
chr13	49039122	.	G	T	1227.9	REJECT	NS=2;DP=124;DPB=132.8;AC=2;AN=2;AF=0.0;RO=93;AO=5;PRO=12.5;PAO=9.5;QR=3139;QA=99;PQR=254.5;PQA=149.5;SRF=71;SRR=22;SAF=5;SAR=0;SRP=59.0716;SAP=13.8677;AB=0.0403226;ABP=230.595;RUN=1;RPP=3.44459;RPPR=187.959;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=50.2924;DPRA=0.0;ODDS=93.0607;GTI=0;TYPE=snp;CIGAR=1M1X3M;NUMALT=2;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.1075;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:28:18:619:2:32:-43.5014,-46.0345,-96.4727:2:7:27:.:.:1:.:.:.:-3.56049e-05	./1:160.002:96:75:2520:3:67:-89.9373,-105.827,-320.242:3:3:92:.:.:1:.:.:.:-0.0152891
chr13	49039122	.	GTTC	TTTT	1227.9	REJECT	NS=2;DP=124;DPB=132.8;AC=2;AN=4;AF=0.5;RO=93;AO=21;PRO=12.5;PAO=0.0;QR=3139;QA=346;PQR=254.5;PQA=0.0;SRF=71;SRR=22;SAF=21;SAR=0;SRP=59.0716;SAP=48.6112;AB=0.169355;ABP=120.76;RUN=1;RPP=5.59539;RPPR=187.959;RPL=13.0;RPR=8.0;EPP=5.59539;EPPR=50.2924;DPRA=0.0;ODDS=93.0607;GTI=0;TYPE=complex;CIGAR=1M1X2M1X;NUMALT=2;MEANALT=3.5;LEN=5;MQM=56.9524;MQMR=60.1075;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:28:18:619:7:119:-43.5014,0.0,-68.2448:7:26:27:.:.:1:.:.:.:-3.56049e-05	0/1:160.002:96:75:2520:14:227:-89.9373,0.0,-236.032:14:15:92:.:.:1:.:.:.:-0.0152891
chr13	49051481	.	T	A	1639.145	REJECT	NS=2;DP=340;DPB=390.0;AC=2;AN=4;AF=0.5;RO=304;AO=86;PRO=0.0;PAO=0.0;QR=11841;QA=3245;PQR=0.0;PQA=0.0;SRF=188;SRR=116;SAF=53;SAR=33;SRP=40.0396;SAP=13.1102;AB=0.220513;ABP=267.618;RUN=1;RPP=13.1102;RPPR=18.1249;RPL=33.0;RPR=53.0;EPP=5.53527;EPPR=9.439;DPRA=0.0;ODDS=119.742;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9419;MQMR=60.0;PAIRED=0.965116;PAIREDR=0.986842;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.487;Dels=0.0;FS=3.9595;HaplotypeScore=5.8975;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.576;QD=8.98;ReadPosRankSum=1.0935;SOR=0.838;ClippingRankSum=1.822	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.0555:98:52:2013:48:1780:-133.118,0.0,-154.113:47:48:98:50,46:1521,0,1771:1:.:1:.:.:.:-3.56049e-05	0/1:121.0555:290:252:9828:38:1465:-53.1999,0.0,-805.403:38:13:290:252,38:773,0,10157:.:1:1:.:.:.:-0.0152891
chr13	49152343	.	C	CT	41.73	PASS	DP=76;AC=1;AN=4;AF=0.5;BaseQRankSum=-1.657;FS=3.217;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=1.73;QD=0.55;ReadPosRankSum=-1.587;SOR=1.227;ClippingRankSum=-0.736	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:30,11:41:79.0:79,0,481:11:27:41:1:.:.:.:.:.:-3.56049e-05	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0152891
chr13	49153728	.	G	A	13340.0	REJECT	NS=2;DP=352;DPB=393.0;AC=4;AN=4;AF=1.0;RO=0;AO=393;PRO=0.0;PAO=0.0;QR=0;QA=15019;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=173;SRP=0.0;SAP=15.2159;AB=0.0;ABP=0.0;RUN=1;RPP=3.01583;RPPR=0.0;RPL=196.0;RPR=197.0;EPP=14.1992;EPPR=0.0;DPRA=0.0;ODDS=55.5017;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994911;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8659;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.485;SOR=0.979	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:82:3117:-280.644,-22.229,0.0:81:100:81:0,80:3313,240,0:1:.:1:.:.:.:-3.56049e-05	1/1:129.501:311:0:0:311:11902:-1070.5,-84.2068,0.0:311:100:311:0,311:13262,918,0:.:1:1:.:.:.:-0.0152891
chr13	49154010	.	T	C	3504.16	PASS	SOMATIC;NS=2;DP=430;DPB=430.0;AC=1;AN=3;AF=0.25;RO=297;AO=133;PRO=0.0;PAO=0.0;QR=11254;QA=4963;PQR=0.0;PQA=0.0;SRF=144;SRR=153;SAF=77;SAR=56;SRP=3.60252;SAP=10.2104;AB=0.400602;ABP=31.5011;RUN=1;RPP=3.02663;RPPR=6.87801;RPL=67.0;RPR=66.0;EPP=3.02663;EPPR=3.19308;DPRA=3.38776;ODDS=62.0977;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986532;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.879;Dels=0.0;FS=5.06;HaplotypeScore=8.7454;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.954;QD=13.53;ReadPosRankSum=1.0;SOR=0.967	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:96:98:3666:0:0:0.0,-26.5427,-329.998:0:0:96:94,0:.:0.0:0:.:.:.:0:.:.:0:-3.56049e-05	0/1:129.501:332:199:7588:133:4963:-356.494,0.0,-592.642:133:40:332:192,125:37.0:0.388:2:4519,0,7503:.:1:1:.:.:1:-0.0152891
chr13	49154057	.	G	GA	1802.64	REJECT	NS=2;DP=401;DPB=460.231;AC=2;AN=4;AF=0.5;RO=293;AO=88;PRO=61.5;PAO=54.5;QR=11072;QA=3237;PQR=2170.5;PQA=1908.5;SRF=159;SRR=134;SAF=52;SAR=36;SRP=7.64228;SAP=9.32731;AB=0.219451;ABP=277.152;RUN=1;RPP=4.58955;RPPR=3.6106;RPL=40.0;RPR=48.0;EPP=28.2783;EPPR=5.15213;DPRA=0.0;ODDS=134.838;GTI=0;TYPE=ins;CIGAR=1M1I12M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=60.1136;MQMR=60.0;PAIRED=0.988636;PAIREDR=0.989761;technology.ILLUMINA=1.0;BaseQRankSum=0.323;FS=1.586;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.049;QD=9.25;ReadPosRankSum=-0.134;SOR=0.895;ClippingRankSum=0.91	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.902:106:55:2059:47:1739:-128.607,0.0,-160.939:48:46:104:56,50:1073,0,1263:1:.:1:.:.:.:-3.56049e-05	0/1:136.804:295:238:9013:41:1498:-60.5122,0.0,-756.594:41:15:279:.:.:.:.:1:.:.:.:-0.0152891
chr13	49504810	.	T	C	2355.11	PASS	SOMATIC;NS=2;DP=305;DPB=305.0;AC=1;AN=3;AF=0.25;RO=217;AO=88;PRO=0.0;PAO=0.0;QR=8380;QA=3389;PQR=0.0;PQA=0.0;SRF=71;SRR=146;SAF=27;SAR=61;SRP=59.2985;SAP=31.5356;AB=0.413146;ABP=16.9669;RUN=1;RPP=38.6422;RPPR=29.0379;RPL=63.0;RPR=25.0;EPP=3.40511;EPPR=10.3052;DPRA=2.31522;ODDS=58.3846;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995392;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.2;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.475;QD=14.75;ReadPosRankSum=1.306;SOR=0.711	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.657:90:92:3529:0:0:0.0,-24.9301,-317.676:0:0:90:88,0:.:0.0:0:.:.:.:0:.:.:0:-3.56049e-05	0/1:120.3285:213:125:4851:88:3389:-247.172,0.0,-378.675:88:41:213:121,86:38.0:0.418:2:3171,0,4788:.:1:1:.:.:1:-0.0152891
chr13	52506048	.	A	G	7890.805	REJECT	NS=2;DP=217;DPB=248.0;AC=4;AN=4;AF=1.0;RO=0;AO=248;PRO=0.0;PAO=0.0;QR=0;QA=9363;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=91;SRP=0.0;SAP=41.1512;AB=0.0;ABP=0.0;RUN=1;RPP=160.232;RPPR=0.0;RPL=57.0;RPR=191.0;EPP=8.05372;EPPR=0.0;DPRA=0.0;ODDS=43.6774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995968;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.01;FS=0.0;HaplotypeScore=6.8232;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.205;SOR=1.3195	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.066:63:0:0:63:2430:-218.88,-17.0938,0.0:63:100:63:0,63:2661,190,0:1:.:1:.:.:.:-3.56049e-05	1/1:124.066:184:0:0:185:6933:-623.658,-50.0218,0.0:184:100:184:0,184:7632,530,0:.:1:1:.:.:.:-0.0152891
chr13	52506159	.	T	C	2817.6	PASS	SOMATIC;NS=2;DP=360;DPB=360.0;AC=1;AN=3;AF=0.25;RO=254;AO=106;PRO=0.0;PAO=0.0;QR=9859;QA=4019;PQR=0.0;PQA=0.0;SRF=93;SRR=161;SAF=30;SAR=76;SRP=42.5414;SAP=46.3578;AB=0.410853;ABP=20.8197;RUN=1;RPP=5.05886;RPPR=47.3289;RPL=58.0;RPR=48.0;EPP=3.09224;EPPR=7.14807;DPRA=2.52941;ODDS=64.6443;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.154;Dels=0.0;FS=9.622;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.072;QD=14.22;ReadPosRankSum=1.057;SOR=1.296	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:147.785:97:102:3940:0:0:0.0,-27.6487,-354.643:0:0:97:92,0:.:0.0:0:.:.:.:0:.:.:0:-3.56049e-05	0/1:123.3925:258:152:5919:106:4019:-291.619,0.0,-462.543:106:41:258:148,102:37.0:0.407:2:3698,0,5877:.:1:1:.:.:1:-0.0152891
chr13	54018755	.	A	C	6269.785	REJECT	NS=2;DP=288;DPB=327.0;AC=3;AN=4;AF=0.75;RO=98;AO=229;PRO=0.0;PAO=0.0;QR=3689;QA=8644;PQR=0.0;PQA=0.0;SRF=24;SRR=74;SAF=57;SAR=172;SRP=58.405;SAP=128.415;AB=0.612;ABP=30.2492;RUN=1;RPP=78.1205;RPPR=49.8964;RPL=159.0;RPR=70.0;EPP=5.75072;EPPR=3.09893;DPRA=0.0;ODDS=45.4354;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991266;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.628;Dels=0.0;FS=0.897;HaplotypeScore=3.8982;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.926;QD=28.16;ReadPosRankSum=-0.474;SOR=1.066;ClippingRankSum=0.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:1:16:76:2846:-254.822,-19.4115,0.0:76:99:77:1,76:3091,220,0:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:250:97:3673:153:5798:-453.89,0.0,-262.697:153:61:250:97,153:5749,0,3337:.:1:1:.:.:.:-0.0152891
chr13	57019064	.	C	T	2524.08	REJECT	NS=2;DP=375;DPB=432.0;AC=2;AN=4;AF=0.5;RO=313;AO=119;PRO=0.0;PAO=0.0;QR=12140;QA=4522;PQR=0.0;PQA=0.0;SRF=154;SRR=159;SAF=69;SAR=50;SRP=3.18374;SAP=9.59771;AB=0.275463;ABP=192.19;RUN=1;RPP=5.21827;RPPR=4.57126;RPL=54.0;RPR=65.0;EPP=6.09416;EPPR=27.1601;DPRA=0.0;ODDS=217.05;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991597;PAIREDR=0.996805;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1755;Dels=0.0;FS=7.366;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5085;QD=12.05;ReadPosRankSum=-0.024;SOR=1.0835;ClippingRankSum=-0.027	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8975:111:45:1723:67:2491:-193.854,0.0,-124.75:66:60:111:44,66:2247,0,1522:1:.:1:.:.:.:-3.56049e-05	0/1:119.8975:319:268:10417:52:2031:-95.9779,0.0,-850.249:51:16:319:268,51:1282,0,10718:.:1:1:.:.:.:-0.0152891
chr13	57019098	.	G	A	9223.28	REJECT	NS=2;DP=367;DPB=419.0;AC=2;AN=4;AF=0.5;RO=113;AO=306;PRO=0.0;PAO=0.0;QR=4283;QA=11634;PQR=0.0;PQA=0.0;SRF=58;SRR=55;SAF=121;SAR=185;SRP=3.18325;SAP=32.0768;AB=0.73031;ABP=196.054;RUN=1;RPP=3.0103;RPPR=3.18325;RPL=153.0;RPR=153.0;EPP=18.0261;EPPR=3.02952;DPRA=0.0;ODDS=230.756;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996732;PAIREDR=0.982301;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.634;Dels=0.0;FS=7.2675;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.892;QD=23.395;ReadPosRankSum=-0.268;SOR=1.059;ClippingRankSum=-1.071	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:59:2202:42:1609:-117.469,0.0,-170.846:42:42:101:59,42:1483,0,2117:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:317:54:2081:264:10025:-815.605,0.0,-101.059:264:83:317:52,264:10265,0,1295:.:1:1:.:.:.:-0.0152891
chr13	67504048	.	T	G	5280.22	REJECT	NS=2;DP=328;DPB=373.0;AC=2;AN=4;AF=0.5;RO=184;AO=189;PRO=0.0;PAO=0.0;QR=7076;QA=7176;PQR=0.0;PQA=0.0;SRF=115;SRR=69;SAF=122;SAR=67;SRP=27.9822;SAP=37.7653;AB=0.506702;ABP=3.15584;RUN=1;RPP=54.5856;RPPR=78.5398;RPL=61.0;RPR=128.0;EPP=20.4855;EPPR=20.0516;DPRA=0.0;ODDS=191.031;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994565;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2375;Dels=0.0;FS=0.4235;HaplotypeScore=7.8197;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0615;QD=15.8;ReadPosRankSum=0.0625;SOR=0.768;ClippingRankSum=-1.485	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:58:2237:31:1206:-84.443,0.0,-177.257:31:35:88:57,31:1001,0,2115:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:283:126:4839:158:5970:-460.091,0.0,-358.36:158:56:283:125,158:5843,0,4537:.:1:1:.:.:.:-0.0152891
chr13	72010839	.	C	CA	325.335	REJECT	NS=2;DP=266;DPB=285.2;AC=2;AN=2;AF=0.0;RO=206;AO=15;PRO=20.3333;PAO=11.3333;QR=7695;QA=492;PQR=729.833;PQA=399.833;SRF=47;SRR=159;SAF=3;SAR=12;SRP=135.238;SAP=14.7363;AB=0.056391;ABP=457.681;RUN=1;RPP=4.31318;RPPR=40.9584;RPL=9.0;RPR=6.0;EPP=6.62942;EPPR=3.05246;DPRA=0.0;ODDS=34.2352;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995146;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.237:75:56:2095:3:94:-16.4056,-24.7566,-206.255:3:4:71:.:.:1:.:.:.:-3.56049e-05	./1:160.002:191:150:5600:12:398:-23.1152,-32.7351,-511.185:12:6:186:.:.:1:.:.:.:-0.0152891
chr13	72010839	.	CA	C	325.335	REJECT	NS=2;DP=266;DPB=285.2;AC=2;AN=4;AF=0.5;RO=206;AO=36;PRO=20.3333;PAO=9.33333;QR=7695;QA=1218;PQR=729.833;PQA=335.333;SRF=47;SRR=159;SAF=13;SAR=23;SRP=135.238;SAP=9.04217;AB=0.135338;ABP=310.249;RUN=1;RPP=11.6962;RPPR=40.9584;RPL=24.0;RPR=12.0;EPP=9.04217;EPPR=3.05246;DPRA=0.0;ODDS=34.2352;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995146;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.685;FS=3.078;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.787;QD=0.87;ReadPosRankSum=-0.855;SOR=0.316;ClippingRankSum=-1.007	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.6185:74:56:2095:12:402:-16.4056,0.0,-185.555:12:17:72:61,13:111,0,1406:1:.:1:.:.:.:-3.56049e-05	0/1:160.002:191:150:5600:24:816:-23.1152,0.0,-490.066:24:13:186:.:.:.:.:1:.:.:.:-0.0152891
chr13	73343039	.	C	T	4426.790000000001	REJECT	NS=2;DP=280;DPB=317.0;AC=2;AN=4;AF=0.5;RO=156;AO=161;PRO=0.0;PAO=0.0;QR=5797;QA=6213;PQR=0.0;PQA=0.0;SRF=43;SRR=113;SAF=32;SAR=129;SRP=71.2168;SAP=129.913;AB=0.507886;ABP=3.18155;RUN=1;RPP=23.5246;RPPR=3.51141;RPL=100.0;RPR=61.0;EPP=3.67118;EPPR=17.2641;DPRA=0.0;ODDS=197.852;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993789;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.764;Dels=0.0;FS=6.412;HaplotypeScore=5.8041;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.812;QD=19.245;ReadPosRankSum=0.9775;SOR=1.548;ClippingRankSum=-0.145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.364:72:31:1191:42:1626:-126.628,0.0,-87.4461:41:57:72:31,40:1494,0,1113:1:.:1:.:.:.:-3.56049e-05	0/1:120.364:243:125:4606:119:4587:-346.585,0.0,-348.257:118:49:243:125,118:4365,0,4358:.:1:1:.:.:.:-0.0152891
chr13	73349359	.	G	C	4907.07	REJECT	NS=2;DP=311;DPB=354.0;AC=2;AN=4;AF=0.5;RO=176;AO=177;PRO=0.0;PAO=0.0;QR=6662;QA=6713;PQR=0.0;PQA=0.0;SRF=108;SRR=68;SAF=134;SAR=43;SRP=22.751;SAP=104.603;AB=0.5;ABP=3.0103;RUN=1;RPP=13.3279;RPPR=5.42853;RPL=74.0;RPR=103.0;EPP=3.61144;EPPR=5.42853;DPRA=0.0;ODDS=243.326;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988701;PAIREDR=0.994318;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.231;Dels=0.0;FS=13.9195;HaplotypeScore=6.7988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1435;QD=17.45;ReadPosRankSum=1.0525;SOR=1.683;ClippingRankSum=-0.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3565:83:46:1670:39:1479:-110.135,0.0,-127.333:39:47:83:42,39:1372,0,1431:1:.:1:.:.:.:-3.56049e-05	0/1:118.3565:268:130:4992:138:5234:-398.227,0.0,-376.475:137:51:267:130,137:4990,0,4785:.:1:1:.:.:.:-0.0152891
chr13	78475313	.	T	C	9475.06	REJECT	NS=2;DP=367;DPB=416.0;AC=2;AN=4;AF=0.5;RO=104;AO=311;PRO=0.0;PAO=0.0;QR=3999;QA=11868;PQR=0.0;PQA=0.0;SRF=50;SRR=54;SAF=136;SAR=175;SRP=3.34437;SAP=13.6303;AB=0.747596;ABP=224.521;RUN=1;RPP=3.01728;RPPR=3.76196;RPL=156.0;RPR=155.0;EPP=5.53088;EPPR=3.09382;DPRA=0.0;ODDS=183.008;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9839;MQMR=60.0;PAIRED=0.996785;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4855;Dels=0.0;FS=5.991;HaplotypeScore=6.8519;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.4255;QD=23.485;ReadPosRankSum=0.197;SOR=0.7435;ClippingRankSum=0.185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.009:96:56:2151:41:1545:-112.788,0.0,-167.349:40:42:96:55,40:1347,0,1966:1:.:1:.:.:.:-3.56049e-05	0/1:120.009:318:48:1848:270:10323:-842.367,0.0,-80.1162:269:85:317:48,269:10552,0,1135:.:1:1:.:.:.:-0.0152891
chr13	78477674	.	A	G	14934.0	REJECT	NS=2;DP=393;DPB=433.0;AC=4;AN=4;AF=1.0;RO=0;AO=433;PRO=0.0;PAO=0.0;QR=0;QA=16718;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=232;SAR=201;SRP=0.0;SAP=7.82966;AB=0.0;ABP=0.0;RUN=1;RPP=19.3039;RPPR=0.0;RPL=245.0;RPR=188.0;EPP=44.5391;EPPR=0.0;DPRA=0.0;ODDS=54.2821;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988453;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9045;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.925;SOR=0.8005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.403:79:0:0:80:3102:-279.305,-21.6994,0.0:79:100:79:0,79:3355,238,0:1:.:1:.:.:.:-3.56049e-05	1/1:126.403:353:0:0:353:13616:-1224.63,-95.6062,0.0:353:100:353:0,353:15218,1051,0:.:1:1:.:.:.:-0.0152891
chr13	79504811	.	T	C	6861.055	REJECT	NS=2;DP=272;DPB=318.0;AC=3;AN=4;AF=0.75;RO=71;AO=247;PRO=0.0;PAO=0.0;QR=2695;QA=9452;PQR=0.0;PQA=0.0;SRF=42;SRR=29;SAF=142;SAR=105;SRP=8.17902;SAP=15.0457;AB=0.685841;ABP=70.8064;RUN=1;RPP=63.5742;RPPR=19.1893;RPL=82.0;RPR=165.0;EPP=11.4588;EPPR=6.71098;DPRA=0.0;ODDS=58.3622;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991903;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.015;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.809;QD=27.76;ReadPosRankSum=1.17;SOR=0.783	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.27:91:0:0:92:3503:-315.33,-24.9204,0.0:91:100:91:0,90:3620,269,0:1:.:1:.:.:.:-3.56049e-05	0/1:119.27:226:71:2695:155:5949:-473.96,0.0,-181.214:155:69:226:71,155:5997,0,2321:.:1:1:.:.:.:-0.0152891
chr13	80911511	.	G	A	2190.935	REJECT	NS=2;DP=344;DPB=404.0;AC=2;AN=4;AF=0.5;RO=295;AO=109;PRO=0.0;PAO=0.0;QR=11218;QA=4052;PQR=0.0;PQA=0.0;SRF=160;SRR=135;SAF=64;SAR=45;SRP=7.61088;SAP=10.2021;AB=0.269802;ABP=188.961;RUN=1;RPP=3.50834;RPPR=3.07655;RPL=57.0;RPR=52.0;EPP=3.1896;EPPR=5.66759;DPRA=0.0;ODDS=215.292;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.99661;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8015;Dels=0.0;FS=2.1715;HaplotypeScore=8.7233;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1205;QD=10.435;ReadPosRankSum=0.3295;SOR=0.925;ClippingRankSum=-1.015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.571:116:59:2237:59:2141:-160.72,0.0,-169.407:58:50:116:58,57:1923,0,1968:1:.:1:.:.:.:-3.56049e-05	0/1:125.571:285:236:8981:50:1911:-94.4276,0.0,-730.394:50:17:285:235,50:1280,0,9173:.:1:1:.:.:.:-0.0152891
chr13	80911525	.	G	A	5261.8	REJECT	NS=2;DP=343;DPB=401.0;AC=2;AN=4;AF=0.5;RO=199;AO=201;PRO=0.0;PAO=0.0;QR=7371;QA=7405;PQR=0.0;PQA=0.0;SRF=112;SRR=87;SAF=110;SAR=91;SRP=9.83025;SAP=6.91031;AB=0.501247;ABP=3.01572;RUN=1;RPP=3.0211;RPPR=3.10851;RPL=101.0;RPR=100.0;EPP=4.3175;EPPR=4.85441;DPRA=0.0;ODDS=359.741;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995025;PAIREDR=0.994975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3485;Dels=0.0;FS=3.1855;HaplotypeScore=16.4752;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.153;QD=17.02;ReadPosRankSum=0.1855;SOR=0.7315;ClippingRankSum=-0.829	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:55:2081:59:2129:-160.747,0.0,-156.445:58:51:112:54,57:1862,0,1870:1:.:1:.:.:.:-3.56049e-05	0/1:129.501:286:144:5290:142:5276:-397.207,0.0,-398.45:142:50:285:143,142:5038,0,4933:.:1:1:.:.:.:-0.0152891
chr13	86369120	.	C	T	13474.7	REJECT	NS=2;DP=351;DPB=402.0;AC=4;AN=4;AF=1.0;RO=0;AO=402;PRO=0.0;PAO=0.0;QR=0;QA=15545;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=205;SRP=0.0;SAP=3.35601;AB=0.0;ABP=0.0;RUN=1;RPP=16.5145;RPPR=0.0;RPL=226.0;RPR=176.0;EPP=3.35601;EPPR=0.0;DPRA=0.0;ODDS=67.3535;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997512;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.615;SOR=0.7565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:101:3866:-347.992,-27.3762,0.0:99:100:99:0,98:4105,294,0:1:.:1:.:.:.:-0.165713	1/1:129.501:300:0:0:301:11679:-1050.49,-81.5505,0.0:300:100:300:0,300:13049,900,0:.:1:1:.:.:.:-0.0152891
chr13	87003817	.	C	T	75.313	REJECT	NS=1;DP=47;DPB=68.1667;AC=1;AN=3;AF=0.0;RO=22;AO=3;PRO=13.3333;PAO=8.83333;QR=780;QA=54;PQR=461.917;PQA=290.25;SRF=18;SRR=4;SAF=0;SAR=3;SRP=22.3561;SAP=9.52472;AB=0.0638298;ABP=80.6751;RUN=1;RPP=9.52472;RPPR=3.0103;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=4.58955;DPRA=0.0;ODDS=15.8302;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:67.884:47:22:780:3:54:-11.2207,-19.1013,-153.186:3:9:35:.:.:1:.:.:.:-7.97923e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0152891
chr13	87003817	.	C	CT	75.313	REJECT	NS=1;DP=47;DPB=68.1667;AC=1;AN=3;AF=0.0;RO=22;AO=3;PRO=13.3333;PAO=12.3333;QR=780;QA=89;PQR=461.917;PQA=425.917;SRF=18;SRR=4;SAF=2;SAR=1;SRP=22.3561;SAP=3.73412;AB=0.0638298;ABP=80.6751;RUN=1;RPP=3.73412;RPPR=3.0103;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=4.58955;DPRA=0.0;ODDS=15.8302;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:67.884:47:22:780:3:89:-11.2207,-7.2865,-76.7243:3:9:35:.:.:1:.:.:.:-7.97923e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0152891
chr13	87003817	.	CT	C	75.313	REJECT	NS=1;DP=47;DPB=68.1667;AC=1;AN=4;AF=0.5;RO=22;AO=7;PRO=13.3333;PAO=10.5;QR=780;QA=233;PQR=461.917;PQA=355.917;SRF=18;SRR=4;SAF=4;SAR=3;SRP=22.3561;SAP=3.32051;AB=0.148936;ABP=53.3238;RUN=1;RPP=3.32051;RPPR=3.0103;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=4.58955;DPRA=0.0;ODDS=15.8302;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.085;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.154;QD=1.36;ReadPosRankSum=-0.872;SOR=0.458;ClippingRankSum=0.188	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:83.442:49:22:780:7:233:-11.2207,0.0,-83.8415:10:23:43:37,14:119,0,706:1:.:1:.:.:.:-7.97923e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0152891
chr13	90001033	.	G	A	12202.45	REJECT	NS=2;DP=323;DPB=375.0;AC=4;AN=4;AF=1.0;RO=0;AO=375;PRO=0.0;PAO=0.0;QR=0;QA=14359;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=154;SRP=0.0;SAP=29.0043;AB=0.0;ABP=0.0;RUN=1;RPP=15.8017;RPPR=0.0;RPL=164.0;RPR=211.0;EPP=12.7443;EPPR=0.0;DPRA=0.0;ODDS=67.9995;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997333;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8547;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.095;SOR=1.137	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.728:101:0:0:102:3935:-354.202,-27.6567,0.0:101:100:101:0,100:4196,301,0:1:.:1:.:.:.:-7.97923e-05	1/1:124.728:272:0:0:273:10424:-937.627,-73.9267,0.0:272:100:272:0,272:11605,807,0:.:1:1:.:.:.:-0.0152891
chr13	100507194	.	G	A	1766.83	REJECT	NS=2;DP=366;DPB=421.0;AC=2;AN=4;AF=0.5;RO=332;AO=89;PRO=0.0;PAO=0.0;QR=12838;QA=3448;PQR=0.0;PQA=0.0;SRF=173;SRR=159;SAF=37;SAR=52;SRP=4.29225;SAP=8.49998;AB=0.211401;ABP=307.579;RUN=1;RPP=3.62026;RPPR=7.43173;RPL=47.0;RPR=42.0;EPP=23.5295;EPPR=3.11495;DPRA=0.0;ODDS=134.248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996988;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8305;Dels=0.0;FS=10.748;HaplotypeScore=2.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.317;QD=8.95;ReadPosRankSum=0.67;SOR=1.281;ClippingRankSum=0.381	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.778:109:62:2399:48:1835:-135.353,0.0,-186.096:48:44:109:61,48:1682,0,2101:1:.:1:.:.:.:-7.97923e-05	0/1:125.778:311:270:10439:41:1613:-60.8303,0.0,-854.679:41:13:311:270,41:878,0,10756:.:1:1:.:.:.:-0.0152891
chr13	106513956	.	A	C	8720.42	REJECT	NS=2;DP=368;DPB=419.0;AC=3;AN=4;AF=0.75;RO=113;AO=306;PRO=0.0;PAO=0.0;QR=4337;QA=11733;PQR=0.0;PQA=0.0;SRF=62;SRR=51;SAF=187;SAR=119;SRP=5.3355;SAP=35.8237;AB=0.644654;ABP=60.807;RUN=1;RPP=16.7488;RPPR=19.1714;RPL=131.0;RPR=175.0;EPP=30.2885;EPPR=3.49071;DPRA=0.0;ODDS=63.9525;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993464;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.742;Dels=0.0;FS=1.5955;HaplotypeScore=3.924;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.211;QD=26.19;ReadPosRankSum=-0.873;SOR=1.1965	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3832:-344.901,-27.3483,0.0:100:100:100:0,99:4064,297,0:1:.:1:.:.:.:-7.97923e-05	0/1:129.501:318:113:4337:205:7901:-624.515,0.0,-303.957:205:64:318:113,205:7908,0,3905:.:1:1:.:.:.:-0.0152891
chr13	109507359	.	A	G	2339.01	PASS	SOMATIC;NS=2;DP=320;DPB=320.0;AC=1;AN=3;AF=0.25;RO=228;AO=92;PRO=0.0;PAO=0.0;QR=8773;QA=3443;PQR=0.0;PQA=0.0;SRF=145;SRR=83;SAF=64;SAR=28;SRP=39.6206;SAP=33.5997;AB=0.37551;ABP=35.9901;RUN=1;RPP=10.6577;RPPR=37.2967;RPL=37.0;RPR=55.0;EPP=7.63648;EPPR=7.61992;DPRA=3.26667;ODDS=47.7792;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991228;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.064;Dels=0.0;FS=2.411;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.545;QD=12.37;ReadPosRankSum=-0.187;SOR=0.993	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:73:75:2849:0:0:0.0,-20.3243,-256.53:0:0:73:71,0:.:0.0:0:.:.:.:0:.:.:0:-7.97923e-05	0/1:129.501:245:153:5924:92:3443:-243.347,0.0,-466.555:92:38:245:149,89:37.0:0.375:2:3059,0,5914:.:1:1:.:.:1:-0.0152891
chr13	110408608	.	C	T	11661.55	REJECT	NS=2;DP=306;DPB=350.0;AC=4;AN=4;AF=1.0;RO=0;AO=350;PRO=0.0;PAO=0.0;QR=0;QA=13524;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=107;SRP=0.0;SAP=117.763;AB=0.0;ABP=0.0;RUN=1;RPP=38.8458;RPPR=0.0;RPL=137.0;RPR=213.0;EPP=8.59409;EPPR=0.0;DPRA=0.0;ODDS=59.2488;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994286;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.175;SOR=1.739	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0375:86:0:0:88:3400:-306.086,-23.8564,0.0:86:100:86:0,85:3594,255,0:1:.:1:.:.:.:-7.97923e-05	1/1:126.0375:262:0:0:262:10124:-910.659,-70.9753,0.0:262:100:262:0,262:11384,786,0:.:1:1:.:.:.:-0.0152891
chr13	110435231	.	C	T	2444.4049999999997	REJECT	NS=2;DP=463;DPB=529.0;AC=2;AN=4;AF=0.5;RO=399;AO=130;PRO=0.0;PAO=0.0;QR=15070;QA=4636;PQR=0.0;PQA=0.0;SRF=189;SRR=210;SAF=64;SAR=66;SRP=5.41035;SAP=3.07711;AB=0.245747;ABP=300.042;RUN=1;RPP=5.41562;RPPR=3.66882;RPL=59.0;RPR=71.0;EPP=3.0103;EPPR=24.6107;DPRA=0.0;ODDS=201.116;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997494;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.215;Dels=0.0;FS=0.702;HaplotypeScore=13.7504;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.791;QD=10.295;ReadPosRankSum=0.5505;SOR=0.624;ClippingRankSum=0.349	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:129:62:2331:70:2462:-185.809,0.0,-174.872:68:52:129:60,66:2238,0,2148:1:.:1:.:.:.:0.285524	0/1:129.501:397:337:12739:60:2174:-88.1094,0.0,-1038.3:60:15:397:337,60:1240,0,13050:.:1:1:.:.:.:-0.0152891
chr13	110435914	.	G	A	4720.755	REJECT	NS=2;DP=334;DPB=379.0;AC=2;AN=4;AF=0.5;RO=192;AO=186;PRO=0.0;PAO=0.0;QR=7291;QA=6660;PQR=0.0;PQA=0.0;SRF=116;SRR=76;SAF=111;SAR=75;SRP=21.1059;SAP=18.1406;AB=0.490765;ABP=3.29104;RUN=1;RPP=6.79286;RPPR=9.52472;RPL=84.0;RPR=102.0;EPP=7.68013;EPPR=4.6389;DPRA=0.0;ODDS=261.845;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994624;PAIREDR=0.994792;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.3835;Dels=0.0;FS=1.694;HaplotypeScore=10.7053;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.543;QD=16.58;ReadPosRankSum=-0.521;SOR=0.576;ClippingRankSum=2.56	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7895:90:41:1552:49:1719:-130.388,0.0,-115.372:49:54:90:41,49:1599,0,1452:1:.:1:.:.:.:0.285524	0/1:117.7895:289:151:5739:137:4941:-366.544,0.0,-438.276:137:48:288:151,137:4584,0,5541:.:1:1:.:.:.:-0.0152891
chr13	110435953	.	A	G	2006.07	REJECT	NS=2;DP=364;DPB=417.0;AC=2;AN=4;AF=0.5;RO=314;AO=103;PRO=0.0;PAO=0.0;QR=11800;QA=3905;PQR=0.0;PQA=0.0;SRF=174;SRR=140;SAF=59;SAR=44;SRP=11.0046;SAP=7.75381;AB=0.247002;ABP=234.848;RUN=1;RPP=5.56125;RPPR=4.00613;RPL=57.0;RPR=46.0;EPP=4.04333;EPPR=3.0103;DPRA=0.0;ODDS=222.513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990446;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5585;Dels=0.0;FS=0.801;HaplotypeScore=15.6167;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2265;QD=10.26;ReadPosRankSum=-0.0255;SOR=0.7975;ClippingRankSum=-0.102	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6005:104:56:2062:49:1879:-141.083,0.0,-157.149:48:47:104:55,48:1716,0,1912:1:.:1:.:.:.:0.285524	0/1:119.6005:312:258:9738:54:2026:-97.7981,0.0,-791.436:54:17:312:258,54:1317,0,9905:.:1:1:.:.:.:-0.0152891
chr13	110436232	.	G	A	2348.17	REJECT	NS=2;DP=307;DPB=359.0;AC=2;AN=4;AF=0.5;RO=255;AO=104;PRO=0.0;PAO=0.0;QR=9549;QA=3867;PQR=0.0;PQA=0.0;SRF=106;SRR=149;SAF=58;SAR=46;SRP=18.7556;SAP=6.01695;AB=0.289694;ABP=140.926;RUN=1;RPP=8.35546;RPPR=7.51504;RPL=44.0;RPR=60.0;EPP=6.01695;EPPR=6.08442;DPRA=0.0;ODDS=151.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.996078;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6375;Dels=0.0;FS=10.336;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.309;QD=12.685;ReadPosRankSum=0.8655;SOR=0.83;ClippingRankSum=0.696	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:41:1549:62:2356:-184.16,0.0,-111.515:62:60:102:40,62:2280,0,1397:1:.:1:.:.:.:0.285524	0/1:129.501:256:214:8000:42:1511:-67.0492,0.0,-650.734:42:16:256:214,42:927,0,8159:.:1:1:.:.:.:-0.0152891
chr14	20260241	.	A	G	3547.55	REJECT	NS=2;DP=216;DPB=242.0;AC=2;AN=4;AF=0.5;RO=114;AO=128;PRO=0.0;PAO=0.0;QR=4245;QA=4888;PQR=0.0;PQA=0.0;SRF=87;SRR=27;SAF=94;SAR=34;SRP=71.5831;SAP=64.083;AB=0.528926;ABP=4.76901;RUN=1;RPP=68.2223;RPPR=30.5156;RPL=33.0;RPR=95.0;EPP=11.2212;EPPR=5.75321;DPRA=0.0;ODDS=136.463;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2445;Dels=0.0;FS=0.6675;HaplotypeScore=1.999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.359;QD=19.525;ReadPosRankSum=0.797;SOR=0.508;ClippingRankSum=-1.713	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:23:848:29:1114:-86.2915,0.0,-62.2984:29:56:52:23,29:1064,0,780:1:.:1:.:.:.:0.000178214	0/1:129.501:190:91:3397:99:3774:-288.087,0.0,-254.164:99:52:190:91,99:3663,0,3227:.:1:1:.:.:.:-0.0119953
chr14	20386925	.	C	A	5799.370000000001	REJECT	NS=2;DP=363;DPB=418.0;AC=2;AN=4;AF=0.5;RO=209;AO=209;PRO=0.0;PAO=0.0;QR=7900;QA=7925;PQR=0.0;PQA=0.0;SRF=107;SRR=102;SAF=110;SAR=99;SRP=3.27005;SAP=4.26747;AB=0.5;ABP=3.0103;RUN=1;RPP=22.2211;RPPR=9.50394;RPL=83.0;RPR=126.0;EPP=22.2211;EPPR=39.1773;DPRA=0.0;ODDS=327.526;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=0.995215;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2145;Dels=0.0;FS=2.1865;HaplotypeScore=2.9649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.635;QD=16.765;ReadPosRankSum=-0.339;SOR=0.763;ClippingRankSum=-0.134	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.266:107:57:2196:51:1921:-143.64,0.0,-168.378:51:47:107:56,51:1635,0,1976:1:.:1:.:.:.:0.000178214	0/1:118.266:309:152:5704:158:6004:-456.111,0.0,-429.134:157:51:309:151,157:5730,0,5380:.:1:1:.:.:.:-0.0119953
chr14	20387014	.	C	T	8862.76	REJECT	NS=2;DP=236;DPB=275.0;AC=4;AN=4;AF=1.0;RO=0;AO=275;PRO=0.0;PAO=0.0;QR=0;QA=10573;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=62;SAR=213;SRP=0.0;SAP=183.053;AB=0.0;ABP=0.0;RUN=1;RPP=96.8258;RPPR=0.0;RPL=192.0;RPR=83.0;EPP=4.34477;EPPR=0.0;DPRA=0.0;ODDS=50.5161;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989091;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.035;SOR=2.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.809:74:0:0:74:2833:-255.112,-20.0638,0.0:74:100:74:0,74:3125,222,0:1:.:1:.:.:.:0.000178214	1/1:124.809:199:0:0:201:7740:-696.32,-54.4586,0.0:199:100:199:0,198:8566,593,0:.:1:1:.:.:.:-0.0119953
chr14	23652346	.	T	A	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=2;AF=0.0;RO=15;AO=4;PRO=69.4333;PAO=15.7833;QR=560;QA=56;PQR=2438.89;PQA=558.886;SRF=2;SRR=13;SAF=0;SAR=4;SRP=20.5268;SAP=11.6962;AB=0.0588235;ABP=117.971;RUN=1;RPP=11.6962;RPPR=3.15506;RPL=0.0;RPR=4.0;EPP=11.6962;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=snp;CIGAR=1X29M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.580791:15:2:78:1:14:-3.05545,-93.1465,-1079.78:1:7:14:.:.:1:.:.:.:0.000178214	./1:91.1455:53:13:482:3:42:-51.0006,-259.157,-2673.29:3:8:39:.:.:1:.:.:.:-0.0119953
chr14	23652346	.	T	TA	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=3;AF=0.25;RO=15;AO=10;PRO=69.4333;PAO=63.6833;QR=560;QA=201;PQR=2438.89;PQA=2228.55;SRF=2;SRR=13;SAF=0;SAR=10;SRP=20.5268;SAP=24.725;AB=0.147059;ABP=76.5849;RUN=1;RPP=3.0103;RPPR=3.15506;RPL=5.0;RPR=5.0;EPP=3.0103;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=ins;CIGAR=1M1I29M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=60.6;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.580791:15:2:78:1:35:-3.05545,-1.80034,-18.0635:1:7:14:.:.:1:.:.:.:0.000178214	0/1:91.1455:53:13:482:9:166:-51.0006,0.0,-51.7214:9:23:39:.:.:1:.:.:.:-0.0119953
chr14	23652346	.	T	TAA	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=3;AF=0.25;RO=15;AO=13;PRO=69.4333;PAO=59.6833;QR=560;QA=217;PQR=2438.89;PQA=2125.55;SRF=2;SRR=13;SAF=1;SAR=12;SRP=20.5268;SAP=23.2217;AB=0.191176;ABP=59.3408;RUN=1;RPP=16.5402;RPPR=3.15506;RPL=11.0;RPR=2.0;EPP=11.1951;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=ins;CIGAR=1M2I29M;NUMALT=6;MEANALT=12.5;LEN=2;MQM=58.7692;MQMR=60.0;PAIRED=0.923077;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.580791:15:2:78:4:64:-3.05545,0.0,-15.4892:4:29:14:.:.:1:.:.:.:0.000178214	./1:91.1455:53:13:482:9:153:-51.0006,-9.35518,-62.1559:9:23:39:.:.:1:.:.:.:-0.0119953
chr14	23652346	.	T	TAAA	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=2;AF=0.0;RO=15;AO=3;PRO=69.4333;PAO=59.6833;QR=560;QA=59;PQR=2438.89;PQA=2125.55;SRF=2;SRR=13;SAF=0;SAR=3;SRP=20.5268;SAP=9.52472;AB=0.0441176;ABP=125.762;RUN=1;RPP=3.73412;RPPR=3.15506;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=ins;CIGAR=1M3I29M;NUMALT=6;MEANALT=12.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.580791:15:2:78:2:32:-3.05545,-2.34064,-18.3524:2:14:14:.:.:1:.:.:.:0.000178214	./1:91.1455:53:13:482:1:27:-51.0006,-18.5307,-73.4142:1:3:39:.:.:1:.:.:.:-0.0119953
chr14	23652346	.	TA	T	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=2;AF=0.0;RO=15;AO=4;PRO=69.4333;PAO=38.7333;QR=560;QA=125;PQR=2438.89;PQA=1367.79;SRF=2;SRR=13;SAF=2;SAR=2;SRP=20.5268;SAP=3.0103;AB=0.0588235;ABP=117.971;RUN=1;RPP=11.6962;RPPR=3.15506;RPL=4.0;RPR=0.0;EPP=3.0103;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=del;CIGAR=1M1D28M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=55.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.580791:15:2:78:2:50:-3.05545,-24.8469,-304.229:2:14:14:.:.:1:.:.:.:0.000178214	./1:91.1455:53:13:482:2:75:-51.0006,-112.203,-848.016:2:5:39:.:.:1:.:.:.:-0.0119953
chr14	23652346	.	TAA	T	459.159	REJECT	NS=2;DP=68;DPB=232.2;AC=2;AN=2;AF=0.0;RO=15;AO=4;PRO=69.4333;PAO=38.0;QR=560;QA=75;PQR=2438.89;PQA=1336.79;SRF=2;SRR=13;SAF=0;SAR=4;SRP=20.5268;SAP=11.6962;AB=0.0588235;ABP=117.971;RUN=1;RPP=3.0103;RPPR=3.15506;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=3.15506;DPRA=0.0;ODDS=1.21601;GTI=1;TYPE=del;CIGAR=1M2D27M;NUMALT=6;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.580791:15:2:78:2:43:-3.05545,-25.4768,-304.86:2:14:14:.:.:1:.:.:.:0.000178214	./1:91.1455:53:13:482:2:32:-51.0006,-126.056,-1000.22:2:5:39:.:.:1:.:.:.:-0.0119953
chr14	23777099	.	G	A	7534.21	REJECT	NS=2;DP=298;DPB=340.0;AC=3;AN=4;AF=0.75;RO=80;AO=260;PRO=0.0;PAO=0.0;QR=3089;QA=9999;PQR=0.0;PQA=0.0;SRF=35;SRR=45;SAF=128;SAR=132;SRP=5.72464;SAP=3.14393;AB=0.688716;ABP=82.5098;RUN=1;RPP=3.31097;RPPR=3.98746;RPL=133.0;RPR=127.0;EPP=5.71629;EPPR=4.74748;DPRA=0.0;ODDS=52.8115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992308;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.717;Dels=0.0;FS=0.2475;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.383;QD=25.9;ReadPosRankSum=-0.485;SOR=0.825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:83:3177:-286.049,-22.5098,0.0:81:100:81:0,80:3440,241,0:1:.:1:.:.:.:0.000178214	0/1:129.501:257:80:3089:177:6822:-544.023,0.0,-208.249:177:69:257:80,177:6857,0,2703:.:1:1:.:.:.:-0.0119953
chr14	23777374	.	A	G	12472.349999999999	REJECT	NS=2;DP=332;DPB=389.0;AC=4;AN=4;AF=1.0;RO=0;AO=389;PRO=0.0;PAO=0.0;QR=0;QA=14913;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=132;SAR=257;SRP=0.0;SAP=90.232;AB=0.0;ABP=0.0;RUN=1;RPP=15.3414;RPPR=0.0;RPL=218.0;RPR=171.0;EPP=18.6907;EPPR=0.0;DPRA=0.0;ODDS=75.4676;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994859;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.335;SOR=1.5825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:114:4445:-400.04,-30.9001,0.0:113:100:113:0,112:4771,337,0:1:.:1:.:.:.:0.000178214	1/1:129.501:275:0:0:275:10468:-941.583,-74.4644,0.0:275:100:275:0,275:11715,816,0:.:1:1:.:.:.:-0.0119953
chr14	25510841	.	G	GAC	11083.3	REJECT	NS=2;DP=311;DPB=604.667;AC=4;AN=4;AF=1.0;RO=0;AO=342;PRO=19.0;PAO=24.0;QR=0;QA=12257;PQR=650.5;PQA=821.5;SRF=0;SRR=0;SAF=142;SAR=200;SRP=0.0;SAP=24.3695;AB=0.0;ABP=0.0;RUN=1;RPP=3.23888;RPPR=0.0;RPL=174.0;RPR=168.0;EPP=34.122;EPPR=0.0;DPRA=0.0;ODDS=62.4524;GTI=0;TYPE=ins;CIGAR=1M2I2M;NUMALT=1;MEANALT=2.5;LEN=2;MQM=60.0585;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=25510841;HOMLEN=1;HOMSEQ=A;SVLEN=2;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.09;QD=29.455;SOR=0.9915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.532:98:0:0:93:3229:-296.764,-25.2477,0.0:93:100:104:14,97:4750,319,0:1:.:1:1:.:.:0.000178214	1/1:124.532:265:0:0:249:9028:-820.951,-68.1732,0.0:249:100:272:52,257:14216,818,0:.:1:1:1:.:.:-0.0119953
chr14	33003467	.	T	C	11262.599999999999	REJECT	NS=2;DP=313;DPB=361.0;AC=4;AN=4;AF=1.0;RO=0;AO=361;PRO=0.0;PAO=0.0;QR=0;QA=13371;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=104;SAR=257;SRP=0.0;SAP=143.819;AB=0.0;ABP=0.0;RUN=1;RPP=79.8179;RPPR=0.0;RPL=237.0;RPR=124.0;EPP=23.9491;EPPR=0.0;DPRA=0.0;ODDS=63.4762;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99723;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9991;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.05;SOR=1.8725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.6515:93:0:0:95:3498:-314.843,-25.6923,0.0:93:100:93:0,92:3671,275,0:1:.:1:.:.:.:0.000178214	1/1:120.6515:266:0:0:266:9873:-888.003,-71.9203,0.0:266:100:266:0,266:10810,753,0:.:1:1:.:.:.:-0.0119953
chr14	35871217	.	G	A	4790.35	REJECT	NS=2;DP=360;DPB=406.0;AC=2;AN=4;AF=0.5;RO=225;AO=180;PRO=0.0;PAO=0.0;QR=8231;QA=6696;PQR=0.0;PQA=0.0;SRF=144;SRR=81;SAF=117;SAR=63;SRP=41.3151;SAP=38.1882;AB=0.44335;ABP=14.3276;RUN=1;RPP=8.84915;RPPR=30.1199;RPL=79.0;RPR=101.0;EPP=15.3636;EPPR=3.79203;DPRA=0.0;ODDS=260.354;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991111;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4155;Dels=0.0;FS=1.121;HaplotypeScore=10.6562;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.211;QD=15.105;ReadPosRankSum=0.243;SOR=0.683;ClippingRankSum=1.32	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:48:1781:42:1550:-115.173,0.0,-135.963:41:47:88:46,40:1328,0,1556:1:.:1:.:.:.:0.000178214	0/1:129.501:315:177:6450:138:5146:-378.47,0.0,-494.912:138:44:314:176,138:4786,0,6179:.:1:1:.:.:.:-0.0119953
chr14	35871960	.	G	A	5604.035	REJECT	NS=2;DP=354;DPB=403.0;AC=2;AN=4;AF=0.5;RO=200;AO=203;PRO=0.0;PAO=0.0;QR=7427;QA=7748;PQR=0.0;PQA=0.0;SRF=107;SRR=93;SAF=115;SAR=88;SRP=5.13834;SAP=10.8083;AB=0.503722;ABP=3.05879;RUN=1;RPP=3.10657;RPPR=3.0103;RPL=100.0;RPR=103.0;EPP=6.10171;EPPR=3.05373;DPRA=0.0;ODDS=268.249;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6665;Dels=0.0;FS=3.0695;HaplotypeScore=10.8353;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.25;QD=18.57;ReadPosRankSum=1.601;SOR=0.732;ClippingRankSum=-1.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:43:1597:55:2107:-163.127,0.0,-117.196:54:55:97:43,53:1894,0,1401:1:.:1:.:.:.:0.000178214	0/1:129.501:305:157:5830:148:5641:-424.856,0.0,-441.823:148:49:305:157,148:5428,0,5581:.:1:1:.:.:.:-0.0119953
chr14	35872926	.	G	A	8999.28	REJECT	NS=2;DP=337;DPB=392.0;AC=2;AN=4;AF=0.5;RO=100;AO=292;PRO=0.0;PAO=0.0;QR=3862;QA=11274;PQR=0.0;PQA=0.0;SRF=41;SRR=59;SAF=142;SAR=150;SRP=10.0459;SAP=3.48624;AB=0.744898;ABP=207.217;RUN=1;RPP=11.607;RPPR=3.09716;RPL=129.0;RPR=163.0;EPP=11.607;EPPR=15.518;DPRA=0.0;ODDS=165.713;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993151;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.714;Dels=0.0;FS=4.3155;HaplotypeScore=4.8486;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.828;QD=24.625;ReadPosRankSum=0.1595;SOR=0.4165;ClippingRankSum=-1.63	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9715:109:58:2216:52:1993:-149.573,0.0,-169.638:51:46:109:58,50:1717,0,1949:1:.:1:.:.:.:0.000178214	0/1:119.9715:282:42:1646:240:9281:-758.414,0.0,-71.6583:240:85:282:42,240:9549,0,1004:.:1:1:.:.:.:-0.0119953
chr14	35873770	.	G	A	1909.66	REJECT	NS=1;DP=116;DPB=116.0;AC=1;AN=4;AF=0.5;RO=50;AO=66;PRO=0.0;PAO=0.0;QR=1931;QA=2538;PQR=0.0;PQA=0.0;SRF=28;SRR=22;SAF=32;SAR=34;SRP=4.57376;SAP=3.1419;AB=0.568966;ABP=7.80251;RUN=1;RPP=9.45891;RPPR=3.70517;RPL=40.0;RPR=26.0;EPP=6.30041;EPPR=3.70517;DPRA=0.0;ODDS=315.943;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.454;FS=3.397;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.677;QD=19.87;ReadPosRankSum=0.683;SOR=0.562;ClippingRankSum=-0.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.062:116:50:1931:66:2538:-196.973,0.0,-142.351:66:57:116:50,66:2333,0,1820:1:.:1:.:.:.:0.000178214	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0119953
chr14	38061742	.	C	T	5249.58	REJECT	NS=2;DP=341;DPB=375.0;AC=2;AN=4;AF=0.5;RO=182;AO=193;PRO=0.0;PAO=0.0;QR=6930;QA=7156;PQR=0.0;PQA=0.0;SRF=130;SRR=52;SAF=141;SAR=52;SRP=75.5995;SAP=92.1307;AB=0.514667;ABP=3.71096;RUN=1;RPP=18.4131;RPPR=20.2389;RPL=78.0;RPR=115.0;EPP=8.96216;EPPR=11.0758;DPRA=0.0;ODDS=181.878;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989637;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0165;Dels=0.0;FS=1.0375;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9345;QD=19.36;ReadPosRankSum=0.9675;SOR=0.6725;ClippingRankSum=1.135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:28:1106:40:1532:-119.531,0.0,-81.1529:40:60:67:26,40:1444,0,911:1:.:1:.:.:.:-0.469841	0/1:129.501:307:154:5824:153:5624:-422.794,0.0,-440.806:153:50:307:154,153:5329,0,5589:.:1:1:.:.:.:-0.0130717
chr14	48011192	.	G	A	6609.76	REJECT	NS=2;DP=414;DPB=477.0;AC=2;AN=4;AF=0.5;RO=239;AO=238;PRO=0.0;PAO=0.0;QR=9165;QA=9103;PQR=0.0;PQA=0.0;SRF=114;SRR=125;SAF=121;SAR=117;SRP=4.10966;SAP=3.15628;AB=0.498952;ABP=3.01485;RUN=1;RPP=20.674;RPPR=10.6513;RPL=141.0;RPR=97.0;EPP=33.7029;EPPR=16.8296;DPRA=0.0;ODDS=395.131;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995798;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.722;Dels=0.0;FS=7.7545;HaplotypeScore=4.857;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.165;QD=17.5;ReadPosRankSum=1.781;SOR=1.024;ClippingRankSum=-1.04	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.806:124:61:2300:65:2420:-183.67,0.0,-172.863:64:52:124:59,64:2095,0,1994:1:.:1:.:.:.:-0.000408587	0/1:117.806:351:178:6865:173:6683:-506.037,0.0,-522.353:173:49:351:178,173:6461,0,6606:.:1:1:.:.:.:-0.0130717
chr14	50605507	.	T	TA	407.056	REJECT	NS=2;DP=140;DPB=175.733;AC=2;AN=2;AF=0.0;RO=85;AO=10;PRO=44.0;PAO=17.0;QR=3177;QA=233;PQR=1586.17;PQA=535.167;SRF=6;SRR=79;SAF=0;SAR=10;SRP=139.149;SAP=24.725;AB=0.0714286;ABP=226.362;RUN=1;RPP=3.87889;RPPR=16.5245;RPL=6.0;RPR=4.0;EPP=3.87889;EPPR=6.10145;DPRA=0.0;ODDS=29.613;GTI=0;TYPE=ins;CIGAR=1M1I29M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988235;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:126.035:38:22:820:2:44:-16.1851,-14.9564,-108.857:2:6:33:.:.:1:.:.:.:-0.000408587	./1:160.002:102:63:2357:8:189:-35.3593,-37.7058,-303.228:8:9:90:.:.:1:.:.:.:-0.0130717
chr14	50605507	.	TA	T	407.056	REJECT	NS=2;DP=140;DPB=175.733;AC=2;AN=4;AF=0.5;RO=85;AO=28;PRO=44.0;PAO=13.0;QR=3177;QA=928;PQR=1586.17;PQA=450.667;SRF=6;SRR=79;SAF=2;SAR=26;SRP=139.149;SAP=47.6806;AB=0.2;ABP=112.453;RUN=1;RPP=10.7656;RPPR=16.5245;RPL=19.0;RPR=9.0;EPP=5.80219;EPPR=6.10145;DPRA=0.0;ODDS=29.613;GTI=0;TYPE=del;CIGAR=1M1D28M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988235;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.035:38:22:820:9:306:-16.1851,0.0,-96.8712:9:27:33:.:.:1:.:.:.:-0.000408587	0/1:160.002:102:63:2357:19:622:-35.3593,0.0,-267.934:19:21:90:.:.:1:.:.:.:-0.0130717
chr14	50616878	.	G	A	6137.22	REJECT	NS=2;DP=372;DPB=432.0;AC=2;AN=4;AF=0.5;RO=216;AO=216;PRO=0.0;PAO=0.0;QR=8362;QA=8315;PQR=0.0;PQA=0.0;SRF=104;SRR=112;SAF=101;SAR=115;SRP=3.6537;SAP=4.98071;AB=0.5;ABP=3.0103;RUN=1;RPP=4.98071;RPPR=3.6537;RPL=115.0;RPR=101.0;EPP=8.80089;EPPR=4.45795;DPRA=0.0;ODDS=353.568;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.976852;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6775;Dels=0.0;FS=0.43;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.156;QD=17.015;ReadPosRankSum=-0.061;SOR=0.732;ClippingRankSum=-0.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4665:116:65:2496:54:2077:-154.661,0.0,-192.392:53:45:116:61,52:1746,0,2098:1:.:1:.:.:.:-0.000408587	0/1:117.4665:312:151:5866:162:6238:-476.275,0.0,-442.84:162:52:312:150,162:6064,0,5593:.:1:1:.:.:.:-0.0130717
chr14	50623654	.	A	AAT	.	PASS	SOMATIC;AC=1;AN=4;END=50623654;HOMLEN=2;HOMSEQ=AT;SVLEN=2;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.000408587	0/1:93,30:30:24:123:.:.:.:1:.:.:-0.0130717
chr14	50623657	.	G	A	3838.92	REJECT	NS=2;DP=240;DPB=277.0;AC=2;AN=4;AF=0.5;RO=136;AO=141;PRO=0.0;PAO=0.0;QR=5212;QA=5365;PQR=0.0;PQA=0.0;SRF=121;SRR=15;SAF=120;SAR=21;SRP=182.412;SAP=153.951;AB=0.509025;ABP=3.20628;RUN=1;RPP=14.2373;RPPR=9.39698;RPL=57.0;RPR=84.0;EPP=6.47542;EPPR=4.60697;DPRA=0.0;ODDS=199.185;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977941;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2035;Dels=0.01;FS=3.125;HaplotypeScore=9.7649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.03;QD=14.17;ReadPosRankSum=-0.2435;SOR=0.3345;ClippingRankSum=-0.597	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3075:70:42:1611:33:1247:-91.9489,0.0,-124.746:28:39:70:42,23:682,0,2644:1:.:1:.:.:.:-0.000408587	0/1:117.3075:201:94:3601:108:4118:-315.757,0.0,-269.251:108:53:201:93,108:3981,0,3373:.:1:1:.:.:.:-0.0130717
chr14	50623679	.	G	A	2481.27	PASS	DP=171;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.7325;Dels=0.0;FS=4.364;HaplotypeScore=76.8779;MLEAC=1;MLEAF=0.5;MQ=59.835;MQRankSum=0.4575;QD=13.365;ReadPosRankSum=2.1235;SOR=0.6025;ClippingRankSum=-0.622	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:50,37:87:99.0:1087,0,3071:37:43:87:1:.:.:.:.:.:-0.000408587	0/1:134,111:245:99.0:3932,0,4824:111:45:245:.:1:.:.:.:.:-0.0130717
chr14	50623679	.	GTGTA	ATGTG	4368.63	REJECT	NS=2;DP=302;DPB=317.4;AC=2;AN=4;AF=0.5;RO=149;AO=144;PRO=14.0;PAO=15.0;QR=5657;QA=5413;PQR=469.0;PQA=531.0;SRF=115;SRR=34;SAF=108;SAR=36;SRP=98.628;SAP=81.1833;AB=0.476821;ABP=4.4196;RUN=1;RPP=27.1378;RPPR=9.43728;RPL=52.0;RPR=92.0;EPP=18.4519;EPPR=25.1768;DPRA=0.0;ODDS=284.225;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=3.5;LEN=5;MQM=59.8611;MQMR=59.698;PAIRED=1.0;PAIREDR=0.973154;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:148.163:89:47:1786:40:1512:-127.478,0.0,-144.816:40:46:87:.:.:1:.:.:.:-0.000408587	0/1:148.163:213:102:3871:104:3901:-327.313,0.0,-319.062:104:50:206:.:.:1:.:.:.:-0.0130717
chr14	50623683	.	A	G	1052.77	PASS	DP=100;AC=1;AN=4;AF=0.5;BaseQRankSum=0.941;FS=3.561;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.351;QD=10.53;ReadPosRankSum=2.016;SOR=0.327;ClippingRankSum=0.974	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:54,37:91:99.0:1081,0,3138:37:41:91:1:.:.:.:.:.:-0.000408587	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0130717
chr14	50647273	.	CTTC	TTTA	151.245	REJECT	NS=2;DP=208;DPB=213.0;AC=2;AN=2;AF=0.0;RO=181;AO=6;PRO=13.0;PAO=0.0;QR=5868;QA=99;PQR=171.0;PQA=0.0;SRF=115;SRR=66;SAF=6;SAR=0;SRP=31.8153;SAP=16.0391;AB=0.0288462;ABP=404.065;RUN=1;RPP=16.0391;RPPR=172.901;RPL=6.0;RPR=0.0;EPP=16.0391;EPPR=3.59816;DPRA=0.0;ODDS=3.86145;GTI=1;TYPE=complex;CIGAR=1X2M1X;NUMALT=2;MEANALT=4.0;LEN=4;MQM=56.6667;MQMR=60.2762;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:16.8958:52:45:1440:3:51:-18.742,-0.722764,-119.308:3:6:51:.:.:1:.:.:.:-0.000408587	./1:0.0353254:156:136:4428:3:48:-1.86319,-9.15632,-380.173:3:2:149:.:.:1:.:.:.:-0.0130717
chr14	50647276	.	C	A	151.245	REJECT	NS=2;DP=208;DPB=213.0;AC=2;AN=4;AF=0.5;RO=181;AO=13;PRO=13.0;PAO=0.0;QR=5868;QA=230;PQR=171.0;PQA=0.0;SRF=115;SRR=66;SAF=13;SAR=0;SRP=31.8153;SAP=31.2394;AB=0.0625;ABP=348.817;RUN=1;RPP=3.17734;RPPR=172.901;RPL=7.0;RPR=6.0;EPP=3.17734;EPPR=3.59816;DPRA=0.0;ODDS=3.86145;GTI=1;TYPE=snp;CIGAR=3M1X;NUMALT=2;MEANALT=4.0;LEN=1;MQM=53.8462;MQMR=60.2762;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:16.8958:52:45:1440:3:59:-18.742,0.0,-118.581:3:6:51:.:.:1:.:.:.:-0.000408587	0/1:0.0353254:156:136:4428:10:171:-1.86319,0.0,-369.179:10:7:149:.:.:1:.:.:.:-0.0130717
chr14	51020827	.	G	GT	535.456	REJECT	NS=2;DP=233;DPB=284.667;AC=2;AN=4;AF=0.5;RO=155;AO=36;PRO=40.5;PAO=36.5;QR=5746;QA=1248;PQR=1342.67;PQA=1201.67;SRF=131;SRR=24;SAF=30;SAR=6;SRP=163.405;SAP=37.7539;AB=0.154506;ABP=244.584;RUN=1;RPP=6.8707;RPPR=24.3187;RPL=14.0;RPR=22.0;EPP=3.0103;EPPR=4.14507;DPRA=0.0;ODDS=18.1945;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.972222;PAIREDR=0.993548;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.177;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.341;QD=1.09;RPA=12,13;RU=T;ReadPosRankSum=0.172;SOR=0.825;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:78.9069:44:29:1067:6:218:-9.87247,0.0,-89.8588:6:15:39:.:.:.:.:1:.:.:.:-0.000408587	0/1:129.501:198:126:4679:30:1030:-52.6586,0.0,-390.165:32:17:184:159,34:263,0,3232:.:1:1:.:.:.:-0.0130717
chr14	51020827	.	GT	G	535.456	REJECT	NS=2;DP=233;DPB=284.667;AC=2;AN=2;AF=0.0;RO=155;AO=24;PRO=40.5;PAO=34.0;QR=5746;QA=924;PQR=1342.67;PQA=1111.67;SRF=131;SRR=24;SAF=21;SAR=3;SRP=163.405;SAP=32.3252;AB=0.103004;ABP=321.974;RUN=1;RPP=16.0391;RPPR=24.3187;RPL=6.0;RPR=18.0;EPP=6.26751;EPPR=4.14507;DPRA=0.0;ODDS=18.1945;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993548;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.9069:44:29:1067:4:146:-9.87247,-7.02725,-107.337:4:10:39:.:.:1:.:.:.:-0.000408587	./1:160.002:189:126:4679:20:778:-52.6586,-22.1505,-432.628:20:11:176:.:.:1:.:.:.:-0.0130717
chr14	52501235	.	A	C	9333.27	REJECT	NS=2;DP=254;DPB=292.0;AC=4;AN=4;AF=1.0;RO=1;AO=291;PRO=0.0;PAO=0.0;QR=16;QA=11015;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=187;SAR=104;SRP=5.18177;SAP=54.4167;AB=0.0;ABP=0.0;RUN=1;RPP=59.491;RPPR=5.18177;RPL=102.0;RPR=189.0;EPP=47.2531;EPPR=5.18177;DPRA=0.0;ODDS=51.161;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986254;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.716;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.16;QD=27.24;ReadPosRankSum=1.171;SOR=0.9605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.441:75:0:0:75:2874:-258.815,-20.3439,0.0:75:100:75:0,75:3078,226,0:1:.:1:.:.:.:-0.000408587	1/1:122.441:216:1:16:216:8141:-730.921,-57.2961,0.0:215:100:216:1,215:8982,626,0:.:1:1:.:.:.:-0.0130717
chr14	58517788	.	A	G	10391.9	REJECT	NS=2;DP=382;DPB=431.0;AC=2;AN=4;AF=0.5;RO=92;AO=339;PRO=0.0;PAO=0.0;QR=3532;QA=12928;PQR=0.0;PQA=0.0;SRF=48;SRR=44;SAF=178;SAR=161;SRP=3.38795;SAP=4.8615;AB=0.786543;ABP=310.387;RUN=1;RPP=5.32269;RPPR=3.86001;RPL=160.0;RPR=179.0;EPP=4.45154;EPPR=7.63648;DPRA=0.0;ODDS=117.914;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9735;MQMR=60.0;PAIRED=0.9941;PAIREDR=0.978261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6985;Dels=0.0;FS=3.402;HaplotypeScore=7.8231;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.3335;QD=24.85;ReadPosRankSum=0.918;SOR=0.645;ClippingRankSum=-0.555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:51:1947:46:1771:-133.118,0.0,-148.987:45:47:96:50,45:1517,0,1778:1:.:1:.:.:.:-0.000408587	0/1:129.501:334:41:1585:293:11157:-913.018,0.0,-52.1826:293:88:334:41,293:11448,0,785:.:1:1:.:.:.:-0.0130717
chr14	58517852	.	C	G	10161.849999999999	REJECT	NS=2;DP=267;DPB=301.0;AC=4;AN=4;AF=1.0;RO=0;AO=301;PRO=0.0;PAO=0.0;QR=0;QA=11642;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=88;SAR=213;SRP=0.0;SAP=115.732;AB=0.0;ABP=0.0;RUN=1;RPP=57.6145;RPPR=0.0;RPL=194.0;RPR=107.0;EPP=29.8543;EPPR=0.0;DPRA=0.0;ODDS=46.1492;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993355;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.44;SOR=1.9455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.307:66:0:0:67:2581:-232.436,-18.1673,0.0:66:100:66:0,66:2797,199,0:1:.:1:.:.:.:-0.000408587	1/1:124.307:234:0:0:234:9061:-815.062,-63.3841,0.0:234:100:234:0,234:10115,695,0:.:1:1:.:.:.:-0.0130717
chr14	60027907	.	C	T	3184.25	PASS	SOMATIC;NS=2;DP=450;DPB=450.0;AC=1;AN=3;AF=0.25;RO=328;AO=122;PRO=0.0;PAO=0.0;QR=12421;QA=4633;PQR=0.0;PQA=0.0;SRF=139;SRR=189;SAF=51;SAR=71;SRP=19.5612;SAP=10.1299;AB=0.356725;ABP=63.9893;RUN=1;RPP=3.65106;RPPR=8.20065;RPL=64.0;RPR=58.0;EPP=3.29508;EPPR=31.8485;DPRA=3.16667;ODDS=68.2692;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991803;PAIREDR=0.996951;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.629;Dels=0.0;FS=0.421;HaplotypeScore=4.93;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.046;QD=11.94;ReadPosRankSum=1.945;SOR=0.758	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:104:108:4080:0:0:0.0,-29.223,-367.169:0:0:104:100,0:.:0.0:0:.:.:.:0:.:.:0:-0.000408587	0/1:129.501:341:220:8341:122:4633:-324.527,0.0,-657.589:121:36:341:210,118:37.0:0.365:2:4100,0,8237:.:1:1:.:.:1:-0.0130717
chr14	61691100	.	C	T	8323.595000000001	REJECT	NS=2;DP=361;DPB=410.0;AC=3;AN=4;AF=0.75;RO=115;AO=294;PRO=0.0;PAO=0.0;QR=4193;QA=11190;PQR=0.0;PQA=0.0;SRF=61;SRR=54;SAF=133;SAR=161;SRP=3.93554;SAP=8.80089;AB=0.636076;ABP=53.8337;RUN=1;RPP=3.7489;RPPR=3.93554;RPL=152.0;RPR=142.0;EPP=3.483;EPPR=3.48236;DPRA=0.0;ODDS=59.0063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.8261;PAIRED=0.986395;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.015;Dels=0.0;FS=1.6405;HaplotypeScore=7.7321;MLEAC=1;MLEAF=0.75;MQ=59.975;MQRankSum=-0.003;QD=29.03;ReadPosRankSum=0.027;SOR=0.9425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.154:91:0:0:93:3546:-319.208,-25.2002,0.0:91:100:91:0,89:3690,267,0:1:.:1:.:.:.:-0.000408587	0/1:119.154:314:115:4193:201:7644:-602.005,0.0,-291.584:200:64:314:113,200:7529,0,3636:.:1:1:.:.:.:-0.0130717
chr14	61788816	.	C	T	1235.4099999999999	REJECT	NS=2;DP=261;DPB=296.0;AC=2;AN=4;AF=0.5;RO=233;AO=62;PRO=0.0;PAO=0.0;QR=8924;QA=2351;PQR=0.0;PQA=0.0;SRF=145;SRR=88;SAF=38;SAR=24;SRP=33.2898;SAP=9.87495;AB=0.209459;ABP=220.04;RUN=1;RPP=14.358;RPPR=37.6886;RPL=22.0;RPR=40.0;EPP=4.27115;EPPR=14.4268;DPRA=0.0;ODDS=48.0907;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.131;Dels=0.0;FS=0.0;HaplotypeScore=3.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2485;QD=9.78;ReadPosRankSum=-0.0195;SOR=0.691;ClippingRankSum=-0.006	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:31:1188:38:1419:-109.085,0.0,-88.2942:38:55:68:30,38:1254,0,1049:1:.:1:.:.:.:-0.000408587	0/1:129.501:227:202:7736:24:932:-22.6461,0.0,-634.686:24:11:226:202,24:375,0,7972:.:1:1:.:.:.:-0.0130717
chr14	61789192	.	G	A	2171.89	PASS	SOMATIC;NS=2;DP=340;DPB=340.0;AC=1;AN=3;AF=0.25;RO=253;AO=86;PRO=0.0;PAO=0.0;QR=9675;QA=3306;PQR=0.0;PQA=0.0;SRF=62;SRR=191;SAF=17;SAR=69;SRP=145.838;SAP=71.2854;AB=0.346774;ABP=53.5846;RUN=1;RPP=13.1102;RPPR=65.0217;RPL=53.0;RPR=33.0;EPP=3.1113;EPPR=3.43086;DPRA=2.69565;ODDS=58.3929;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.976744;PAIREDR=0.992095;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.447;Dels=0.0;FS=3.667;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.164;QD=11.73;ReadPosRankSum=0.784;SOR=1.019	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.976:90:92:3549:0:0:0.0,-24.9337,-319.476:0:0:90:88,0:.:0.0:0:.:.:.:0:.:.:0:-0.000408587	0/1:122.488:247:161:6126:86:3306:-230.503,0.0,-484.147:85:35:246:155,83:38.0:0.355:2:2925,0,6088:.:1:1:.:.:1:-0.0130717
chr14	61997226	.	C	T	12742.55	REJECT	NS=2;DP=339;DPB=390.0;AC=4;AN=4;AF=1.0;RO=0;AO=390;PRO=0.0;PAO=0.0;QR=0;QA=14778;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=180;SAR=210;SRP=0.0;SAP=8.02139;AB=0.0;ABP=0.0;RUN=1;RPP=19.2462;RPPR=0.0;RPL=168.0;RPR=222.0;EPP=3.56709;EPPR=0.0;DPRA=0.0;ODDS=65.8084;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992308;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=13.7438;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.145;SOR=0.8155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:98:0:0:100:3751:-337.252,-26.7052,0.0:98:100:98:0,96:4028,288,0:1:.:1:.:.:.:-0.000408587	1/1:129.501:289:0:0:290:11027:-991.843,-78.5173,0.0:289:100:289:0,289:12286,855,0:.:1:1:.:.:.:-0.0130717
chr14	62114519	.	G	T	5762.885	REJECT	NS=2;DP=368;DPB=423.0;AC=2;AN=4;AF=0.5;RO=212;AO=211;PRO=0.0;PAO=0.0;QR=8082;QA=8016;PQR=0.0;PQA=0.0;SRF=107;SRR=105;SAF=129;SAR=82;SRP=3.05127;SAP=25.7439;AB=0.498818;ABP=3.01543;RUN=1;RPP=3.8439;RPPR=3.05127;RPL=101.0;RPR=110.0;EPP=15.6172;EPPR=16.285;DPRA=0.0;ODDS=335.282;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995283;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1175;Dels=0.0;FS=9.34;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8755;QD=17.86;ReadPosRankSum=0.071;SOR=1.231;ClippingRankSum=0.64	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:51:1963:58:2195:-168.039,0.0,-147.129:57:53:107:49,57:1992,0,1648:1:.:1:.:.:.:-0.000408587	0/1:129.501:314:161:6119:153:5821:-438.57,0.0,-465.337:153:49:314:161,153:5585,0,5859:.:1:1:.:.:.:-0.0130717
chr14	62116307	.	G	T	4872.085	REJECT	NS=2;DP=325;DPB=366.0;AC=2;AN=4;AF=0.5;RO=189;AO=176;PRO=0.0;PAO=0.0;QR=7084;QA=6739;PQR=0.0;PQA=0.0;SRF=78;SRR=111;SAF=60;SAR=116;SRP=15.5221;SAP=41.702;AB=0.480874;ABP=4.17316;RUN=1;RPP=6.16881;RPPR=14.0515;RPL=96.0;RPR=80.0;EPP=6.16881;EPPR=4.4005;DPRA=0.0;ODDS=236.294;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989418;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.927;Dels=0.0;FS=6.3525;HaplotypeScore=10.6809;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.39;QD=18.205;ReadPosRankSum=0.402;SOR=0.873;ClippingRankSum=-0.569	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:37:1382:43:1669:-128.597,0.0,-102.741:43:55:78:34,43:1562,0,1168:1:.:1:.:.:.:-0.000408587	0/1:129.501:285:152:5702:133:5070:-378.852,0.0,-435.746:133:47:284:151,133:4803,0,5501:.:1:1:.:.:.:-0.0130717
chr14	62117489	.	C	T	5665.39	REJECT	NS=2;DP=350;DPB=400.0;AC=2;AN=4;AF=0.5;RO=203;AO=197;PRO=0.0;PAO=0.0;QR=7621;QA=7632;PQR=0.0;PQA=0.0;SRF=109;SRR=94;SAF=119;SAR=78;SRP=5.4171;SAP=21.5395;AB=0.4925;ABP=3.20573;RUN=1;RPP=38.8231;RPPR=24.6715;RPL=70.0;RPR=127.0;EPP=4.87314;EPPR=3.021;DPRA=0.0;ODDS=238.605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994924;PAIREDR=0.995074;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5895;Dels=0.0;FS=3.642;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5785;QD=16.425;ReadPosRankSum=0.84;SOR=0.9865;ClippingRankSum=1.066	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:60:2244:37:1450:-104.24,0.0,-175.712:37:38:97:60,37:1294,0,2061:1:.:1:.:.:.:-0.000408587	0/1:129.501:302:143:5377:160:6182:-473.994,0.0,-401.593:159:53:302:142,159:5988,0,5059:.:1:1:.:.:.:-0.0130717
chr14	64520800	.	G	A	12399.7	REJECT	NS=2;DP=329;DPB=379.0;AC=4;AN=4;AF=1.0;RO=0;AO=379;PRO=0.0;PAO=0.0;QR=0;QA=14521;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=248;SAR=131;SRP=0.0;SAP=81.4411;AB=0.0;ABP=0.0;RUN=1;RPP=78.7827;RPPR=0.0;RPL=132.0;RPR=247.0;EPP=6.04119;EPPR=0.0;DPRA=0.0;ODDS=66.0857;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9472;MQMR=0.0;PAIRED=0.992084;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7989;MLEAC=2;MLEAF=1.0;MQ=59.97;QD=28.49;SOR=1.5475	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.805:98:0:0:99:3789:-341.054,-26.8256,0.0:98:100:98:0,98:4037,294,0:1:.:1:.:.:.:-0.000408587	1/1:121.805:280:0:0:280:10732:-965.298,-75.8185,0.0:280:100:280:0,280:11965,828,0:.:1:1:.:.:.:-0.0130717
chr14	65008251	.	C	T	11674.7	REJECT	NS=2;DP=310;DPB=357.0;AC=4;AN=4;AF=1.0;RO=0;AO=357;PRO=0.0;PAO=0.0;QR=0;QA=13570;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=152;SAR=205;SRP=0.0;SAP=20.0962;AB=0.0;ABP=0.0;RUN=1;RPP=4.76816;RPPR=0.0;RPL=187.0;RPR=170.0;EPP=7.44448;EPPR=0.0;DPRA=0.0;ODDS=62.3304;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991597;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.946;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.47;SOR=1.166	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:93:3523:-317.133,-25.1947,0.0:93:100:93:0,93:3786,279,0:1:.:1:.:.:.:-0.000408587	1/1:129.501:263:0:0:264:10047:-903.375,-71.1161,0.0:263:100:263:0,263:11237,783,0:.:1:1:.:.:.:-0.0130717
chr14	71199452	.	G	A	6779.3150000000005	REJECT	NS=2;DP=407;DPB=466.0;AC=2;AN=4;AF=0.5;RO=211;AO=255;PRO=0.0;PAO=0.0;QR=7956;QA=9289;PQR=0.0;PQA=0.0;SRF=104;SRR=107;SAF=124;SAR=131;SRP=3.10292;SAP=3.42756;AB=0.54721;ABP=12.0317;RUN=1;RPP=4.04068;RPPR=9.44239;RPL=133.0;RPR=122.0;EPP=3.22319;EPPR=3.26758;DPRA=0.0;ODDS=323.614;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992157;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.3245;Dels=0.0;FS=0.356;HaplotypeScore=8.8282;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2515;QD=18.605;ReadPosRankSum=-0.535;SOR=0.7555;ClippingRankSum=-0.932	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9835:115:50:1923:67:2453:-189.089,0.0,-141.399:66:57:115:48,65:2120,0,1721:1:.:1:.:.:.:-0.000408587	0/1:118.9835:349:161:6033:188:6836:-520.468,0.0,-448.234:188:54:349:161,188:6555,0,5681:.:1:1:.:.:.:-0.0130717
chr14	71201179	.	C	G	1982.68	REJECT	NS=2;DP=385;DPB=445.0;AC=2;AN=4;AF=0.5;RO=348;AO=97;PRO=0.0;PAO=0.0;QR=13286;QA=3698;PQR=0.0;PQA=0.0;SRF=178;SRR=170;SAF=54;SAR=43;SRP=3.40965;SAP=5.71904;AB=0.217978;ABP=310.437;RUN=1;RPP=3.03269;RPPR=12.0207;RPL=48.0;RPR=49.0;EPP=12.8827;EPPR=16.2139;DPRA=0.0;ODDS=127.671;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979381;PAIREDR=0.988506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5845;Dels=0.0;FS=2.368;HaplotypeScore=3.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1875;QD=9.345;ReadPosRankSum=-0.212;SOR=0.8805;ClippingRankSum=0.96	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5385:116:62:2351:56:2087:-155.846,0.0,-180.02:55:47:116:60,55:1940,0,2201:1:.:1:.:.:.:-0.000408587	0/1:117.5385:326:286:10935:41:1611:-56.3476,0.0,-894.976:40:12:326:286,40:793,0,11251:.:1:1:.:.:.:-0.0130717
chr14	71201192	.	T	C	2002.82	REJECT	NS=2;DP=396;DPB=458.0;AC=2;AN=4;AF=0.5;RO=357;AO=101;PRO=0.0;PAO=0.0;QR=13782;QA=3846;PQR=0.0;PQA=0.0;SRF=179;SRR=178;SAF=51;SAR=50;SRP=3.01638;SAP=3.0318;AB=0.220524;ABP=313.73;RUN=1;RPP=6.64375;RPPR=3.01638;RPL=57.0;RPR=44.0;EPP=21.0916;EPPR=7.44448;DPRA=0.0;ODDS=140.333;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980198;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.802;Dels=0.0;FS=1.7925;HaplotypeScore=4.8905;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.595;QD=8.96;ReadPosRankSum=-0.7355;SOR=0.807;ClippingRankSum=1.244	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:65:2503:57:2142:-159.704,0.0,-192.598:56:47:121:64,56:1892,0,2357:1:.:1:.:.:.:-0.000408587	0/1:129.501:335:292:11279:44:1704:-62.266,0.0,-923.434:43:13:335:292,43:873,0,11593:.:1:1:.:.:.:-0.0130717
chr14	71202650	.	C	T	10551.9	REJECT	NS=2;DP=291;DPB=324.0;AC=4;AN=4;AF=1.0;RO=1;AO=321;PRO=0.0;PAO=0.0;QR=16;QA=11920;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=189;SAR=132;SRP=5.18177;SAP=24.9888;AB=0.0;ABP=0.0;RUN=1;RPP=66.6595;RPPR=5.18177;RPL=112.0;RPR=209.0;EPP=13.2994;EPPR=5.18177;DPRA=0.0;ODDS=44.8751;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993769;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.651;Dels=0.0;FS=0.0;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.218;QD=30.73;ReadPosRankSum=-0.541;SOR=0.6575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.5915:64:0:0:65:2420:-217.963,-17.614,0.0:64:100:64:0,63:2518,190,0:1:.:1:.:.:.:-0.000408587	1/1:126.5915:258:1:16:256:9500:-853.161,-68.119,0.0:255:100:256:1,255:10549,746,0:.:1:1:.:.:.:-0.0130717
chr14	71215729	.	G	A	2356.15	PASS	SOMATIC;NS=2;DP=328;DPB=328.0;AC=1;AN=3;AF=0.25;RO=240;AO=88;PRO=0.0;PAO=0.0;QR=9264;QA=3402;PQR=0.0;PQA=0.0;SRF=76;SRR=164;SAF=30;SAR=58;SRP=73.0765;SAP=22.3561;AB=0.384279;ABP=29.6464;RUN=1;RPP=12.8806;RPPR=17.4868;RPL=54.0;RPR=34.0;EPP=6.56362;EPPR=10.1038;DPRA=2.31313;ODDS=62.7041;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.9875;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.418;Dels=0.0;FS=0.529;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.022;QD=13.56;ReadPosRankSum=-0.457;SOR=0.605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:96:99:3758:0:0:0.0,-26.8061,-338.241:0:0:96:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.000408587	0/1:129.501:228:141:5506:88:3402:-243.987,0.0,-433.238:88:38:228:138,84:38.0:0.37:2:3121,0,5434:.:1:1:.:.:1:-0.0130717
chr14	71227913	.	A	C	6921.88	REJECT	NS=2;DP=256;DPB=297.0;AC=2;AN=4;AF=0.5;RO=68;AO=229;PRO=0.0;PAO=0.0;QR=2545;QA=8812;PQR=0.0;PQA=0.0;SRF=23;SRR=45;SAF=63;SAR=166;SRP=18.4661;SAP=103.609;AB=0.771044;ABP=192.528;RUN=1;RPP=38.2944;RPPR=35.7101;RPL=145.0;RPR=84.0;EPP=4.15767;EPPR=6.20364;DPRA=0.0;ODDS=85.9359;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991266;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.185;Dels=0.0;FS=6.5005;HaplotypeScore=3.9611;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.175;QD=26.655;ReadPosRankSum=1.886;SOR=1.3535;ClippingRankSum=0.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:39:1471:41:1545:-117.417,0.0,-110.786:40:52:78:36,40:1467,0,1278:1:.:1:.:.:.:-0.000408587	0/1:129.501:216:29:1074:188:7267:-594.958,0.0,-37.8286:187:87:216:29,187:7454,0,548:.:1:1:.:.:.:-0.0130717
chr14	75483812	.	T	C	7328.445	REJECT	NS=2;DP=312;DPB=357.0;AC=3;AN=4;AF=0.75;RO=96;AO=261;PRO=0.0;PAO=0.0;QR=3704;QA=9987;PQR=0.0;PQA=0.0;SRF=64;SRR=32;SAF=162;SAR=99;SRP=26.1727;SAP=36.0317;AB=0.641791;ABP=49.8104;RUN=1;RPP=16.9959;RPPR=3.10078;RPL=110.0;RPR=151.0;EPP=42.621;EPPR=10.339;DPRA=0.0;ODDS=56.5561;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.282;Dels=0.0;FS=1.1255;HaplotypeScore=4.9323;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.639;QD=26.61;ReadPosRankSum=-0.527;SOR=0.862	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.8705:88:0:0:89:3423:-308.171,-24.136,0.0:88:100:88:0,88:3562,265,0:1:.:1:.:.:.:-0.000408587	0/1:118.8705:268:96:3704:172:6564:-517.85,0.0,-260.595:172:64:268:96,172:6570,0,3344:.:1:1:.:.:.:-0.0130717
chr14	75489632	.	C	T	2751.98	PASS	SOMATIC;NS=2;DP=434;DPB=434.0;AC=1;AN=3;AF=0.25;RO=325;AO=108;PRO=0.0;PAO=0.0;QR=12510;QA=4132;PQR=0.0;PQA=0.0;SRF=176;SRR=149;SAF=52;SAR=56;SRP=7.88108;SAP=3.332;AB=0.333333;ABP=80.4595;RUN=1;RPP=11.0528;RPPR=16.5402;RPL=44.0;RPR=64.0;EPP=3.332;EPPR=3.07043;DPRA=0.0;ODDS=62.9663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.996923;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.695;Dels=0.0;FS=3.262;HaplotypeScore=6.8272;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.667;QD=11.1;ReadPosRankSum=-0.737;SOR=0.642	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.163:111:112:4300:1:40:0.0,-27.0095,-383.385:1:1:111:108,1:.:0.009174:0:.:.:.:0:.:.:0:-0.000408587	0/1:119.5815:319:213:8210:107:4092:-281.375,0.0,-651.794:106:33:318:207,102:38.0:0.326:2:3569,0,8213:.:1:1:.:.:1:-0.0130717
chr14	75505008	.	G	C	6721.135	REJECT	NS=2;DP=275;DPB=312.0;AC=3;AN=4;AF=0.75;RO=77;AO=235;PRO=0.0;PAO=0.0;QR=2905;QA=8997;PQR=0.0;PQA=0.0;SRF=54;SRR=23;SAF=167;SAR=68;SRP=30.1114;SAP=93.5746;AB=0.676471;ABP=67.3881;RUN=1;RPP=121.0;RPPR=60.1172;RPL=61.0;RPR=174.0;EPP=3.75876;EPPR=9.35551;DPRA=0.0;ODDS=47.1187;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991489;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.182;Dels=0.0;FS=0.0;HaplotypeScore=6.7508;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.328;QD=27.23;ReadPosRankSum=0.26;SOR=1.312	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.7495:73:0:0:74:2768:-249.23,-20.0374,0.0:73:100:73:0,72:3355,229,0:1:.:1:.:.:.:-0.000408587	0/1:118.7495:238:77:2905:161:6229:-495.869,0.0,-196.85:161:68:238:77,161:6293,0,2506:.:1:1:.:.:.:-0.0130717
chr14	75505016	.	A	G	11324.05	REJECT	NS=2;DP=301;DPB=341.0;AC=4;AN=4;AF=1.0;RO=0;AO=340;PRO=0.0;PAO=0.0;QR=0;QA=13044;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=242;SAR=98;SRP=0.0;SAP=135.445;AB=0.0;ABP=0.0;RUN=1;RPP=117.69;RPPR=0.0;RPL=103.0;RPR=237.0;EPP=4.26209;EPPR=0.0;DPRA=0.0;ODDS=52.988;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994118;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8989;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.36;SOR=1.882	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.4935:78:0:0:78:2978:-268.13,-21.1373,0.0:77:100:77:0,77:3399,232,0:1:.:1:.:.:.:-0.000408587	1/1:120.4935:262:0:0:262:10066:-905.397,-70.9352,0.0:262:100:262:0,262:11237,774,0:.:1:1:.:.:.:-0.0130717
chr14	75513828	.	G	A	2808.08	PASS	SOMATIC;NS=2;DP=405;DPB=405.0;AC=1;AN=3;AF=0.25;RO=297;AO=108;PRO=0.0;PAO=0.0;QR=11370;QA=4144;PQR=0.0;PQA=0.0;SRF=152;SRR=145;SAF=47;SAR=61;SRP=3.36856;SAP=6.95112;AB=0.342857;ABP=70.5741;RUN=1;RPP=12.7417;RPPR=5.6497;RPL=65.0;RPR=43.0;EPP=3.332;EPPR=5.12328;DPRA=3.5;ODDS=57.179;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.174;Dels=0.0;FS=4.685;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.334;QD=11.67;ReadPosRankSum=-0.311;SOR=0.974	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:88:90:3450:0:0:0.0,-24.4065,-310.603:0:0:88:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.000408587	0/1:129.501:315:207:7920:108:4144:-287.425,0.0,-627.048:108:34:315:201,104:38.0:0.338:2:3703,0,7909:.:1:1:.:.:1:-0.0130717
chr14	75513883	.	T	C	14554.8	REJECT	NS=2;DP=382;DPB=434.0;AC=4;AN=4;AF=1.0;RO=0;AO=433;PRO=0.0;PAO=0.0;QR=0;QA=16609;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=219;SAR=214;SRP=0.0;SAP=3.13567;AB=0.0;ABP=0.0;RUN=1;RPP=10.638;RPPR=0.0;RPL=197.0;RPR=236.0;EPP=3.13567;EPPR=0.0;DPRA=0.0;ODDS=67.9111;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997691;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.465;SOR=0.7155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:102:3840:-345.626,-27.6184,0.0:101:100:101:0,101:4082,302,0:1:.:1:.:.:.:-0.000408587	1/1:129.501:330:0:0:331:12769:-1148.49,-89.657,0.0:330:100:330:0,330:14247,984,0:.:1:1:.:.:.:-0.0130717
chr14	81574959	.	A	G	8679.985	REJECT	NS=2;DP=385;DPB=440.0;AC=3;AN=4;AF=0.75;RO=119;AO=321;PRO=0.0;PAO=0.0;QR=4555;QA=11753;PQR=0.0;PQA=0.0;SRF=60;SRR=59;SAF=163;SAR=158;SRP=3.02855;SAP=3.17942;AB=0.645646;ABP=64.3658;RUN=1;RPP=4.53236;RPPR=4.48836;RPL=168.0;RPR=153.0;EPP=23.4736;EPPR=3.02855;DPRA=0.0;ODDS=64.1461;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993769;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.193;Dels=0.0;FS=0.0;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.821;QD=28.23;ReadPosRankSum=0.8285;SOR=0.4915;ClippingRankSum=0.817	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:1:16:106:3772:-338.015,-27.4592,0.0:105:99:106:1,105:3929,305,0:1:.:1:.:.:.:-0.000408587	0/1:129.501:332:118:4539:215:7981:-627.681,0.0,-318.162:214:64:332:118,213:7813,0,4130:.:1:1:.:.:.:-0.0130717
chr14	81575005	.	C	A	7500.42	REJECT	NS=2;DP=323;DPB=367.0;AC=3;AN=4;AF=0.75;RO=95;AO=272;PRO=0.0;PAO=0.0;QR=3591;QA=10035;PQR=0.0;PQA=0.0;SRF=36;SRR=59;SAF=89;SAR=183;SRP=15.102;SAP=73.5512;AB=0.664311;ABP=69.3745;RUN=1;RPP=10.1953;RPPR=5.77607;RPL=151.0;RPR=121.0;EPP=13.3567;EPPR=22.2335;DPRA=0.0;ODDS=53.2674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981618;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.351;Dels=0.0;FS=0.793;HaplotypeScore=8.7783;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.68;QD=30.24;ReadPosRankSum=-0.404;SOR=1.367	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:84:2993:-269.44,-22.7078,0.0:83:100:83:0,83:3202,247,0:1:.:1:.:.:.:-0.000408587	0/1:129.501:281:95:3591:188:7042:-556.815,0.0,-246.392:186:66:281:95,185:6914,0,3198:.:1:1:.:.:.:-0.0130717
chr14	81610583	.	G	C	13274.3	REJECT	NS=2;DP=350;DPB=403.0;AC=4;AN=4;AF=1.0;RO=1;AO=401;PRO=0.0;PAO=0.0;QR=16;QA=15390;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=195;SAR=206;SRP=5.18177;SAP=3.66553;AB=0.0;ABP=0.0;RUN=1;RPP=4.22871;RPPR=5.18177;RPL=193.0;RPR=208.0;EPP=4.22871;EPPR=5.18177;DPRA=0.0;ODDS=69.1835;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.72;Dels=0.0;FS=0.0;HaplotypeScore=4.8967;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.488;QD=28.915;ReadPosRankSum=-1.046;SOR=0.5655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:104:3974:-357.68,-28.1709,0.0:103:100:103:0,102:4271,306,0:1:.:1:.:.:.:-0.000408587	1/1:129.501:298:1:16:297:11416:-1025.4,-79.2747,0.0:297:100:298:1,297:12782,885,0:.:1:1:.:.:.:-0.0130717
chr14	95566105	.	AC	A	90.25	PASS	DP=54;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=1.464;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=-1.235;QD=1.67;ReadPosRankSum=-1.784;SOR=0.613;ClippingRankSum=0.32	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:5,31:36:9.0:127,0,9:31:86:36:1:.:.:.:.:.:-0.000408587	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0130717
chr14	95566107	.	AC	A	90.25	PASS	DP=54;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=2.79;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.046;QD=1.67;ReadPosRankSum=-1.189;SOR=0.613;ClippingRankSum=0.366	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:5,31:36:9.0:127,0,9:31:86:36:1:.:.:.:.:.:-0.000408587	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0130717
chr14	95566108	.	C	A	7567.12	REJECT	NS=2;DP=242;DPB=242.0;AC=4;AN=4;AF=1.0;RO=0;AO=242;PRO=0.0;PAO=0.0;QR=0;QA=8614;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=174;SAR=68;SRP=0.0;SAP=103.831;AB=0.0;ABP=0.0;RUN=1;RPP=11.086;RPPR=0.0;RPL=106.0;RPR=136.0;EPP=33.1956;EPPR=0.0;DPRA=0.0;ODDS=42.8932;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8802;MQMR=0.0;PAIRED=0.983471;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7626;MLEAC=2;MLEAF=1.0;MQ=59.85;QD=27.26;SOR=2.111	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:160.002:62:0:0:62:2171:-195.528,-16.7532,0.0:62:100:62:.:.:.:.:1:.:.:.:-0.000408587	1/1:129.501:180:0:0:180:6443:-579.283,-48.2802,0.0:180:100:180:0,180:7152,512,0:.:1:1:.:.:.:-0.0130717
chr14	96103099	.	A	G	5699.77	REJECT	NS=2;DP=373;DPB=425.0;AC=2;AN=4;AF=0.5;RO=220;AO=205;PRO=0.0;PAO=0.0;QR=8258;QA=7837;PQR=0.0;PQA=0.0;SRF=108;SRR=112;SAF=91;SAR=114;SRP=3.16823;SAP=8.61376;AB=0.482353;ABP=4.1599;RUN=1;RPP=6.07155;RPPR=7.78754;RPL=111.0;RPR=94.0;EPP=14.5456;EPPR=11.8936;DPRA=0.0;ODDS=320.023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6155;Dels=0.0;FS=2.196;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.048;QD=16.875;ReadPosRankSum=1.3565;SOR=0.8685;ClippingRankSum=0.313	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:52:1866:51:1976:-149.999,0.0,-140.046:51:50:103:52,51:1719,0,1661:1:.:1:.:.:.:-0.000408587	0/1:129.501:322:168:6392:154:5861:-439.959,0.0,-487.741:154:48:322:168,154:5609,0,6180:.:1:1:.:.:.:-0.0130717
chr14	96103115	.	C	T	5300.91	REJECT	NS=2;DP=333;DPB=378.0;AC=2;AN=4;AF=0.5;RO=189;AO=189;PRO=0.0;PAO=0.0;QR=7249;QA=7117;PQR=0.0;PQA=0.0;SRF=81;SRR=108;SAF=83;SAR=106;SRP=11.386;SAP=9.08812;AB=0.5;ABP=3.0103;RUN=1;RPP=8.07707;RPPR=15.5221;RPL=105.0;RPR=84.0;EPP=10.1911;EPPR=22.3238;DPRA=0.0;ODDS=264.802;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994709;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.57;Dels=0.0;FS=0.2155;HaplotypeScore=2.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3465;QD=17.27;ReadPosRankSum=0.5365;SOR=0.663;ClippingRankSum=-0.259	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.877:89:48:1862:41:1551:-115.506,0.0,-143.504:41:46:89:48,41:1462,0,1585:1:.:1:.:.:.:-0.000408587	0/1:118.877:289:141:5387:148:5566:-422.424,0.0,-406.286:148:51:289:141,148:5355,0,5164:.:1:1:.:.:.:-0.0130717
chr14	103338324	.	T	A	5461.950000000001	REJECT	NS=2;DP=328;DPB=371.0;AC=2;AN=4;AF=0.5;RO=181;AO=190;PRO=0.0;PAO=0.0;QR=6894;QA=7310;PQR=0.0;PQA=0.0;SRF=80;SRR=101;SAF=70;SAR=120;SRP=8.30101;SAP=31.5823;AB=0.512129;ABP=3.4844;RUN=1;RPP=14.7134;RPPR=10.5085;RPL=111.0;RPR=79.0;EPP=5.93607;EPPR=11.7562;DPRA=0.0;ODDS=285.301;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989474;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.052;Dels=0.0;FS=5.095;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.353;QD=17.845;ReadPosRankSum=0.0175;SOR=0.8665;ClippingRankSum=0.761	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:43:1650:43:1660:-126.124,0.0,-125.244:42:50:84:41,42:1402,0,1418:1:.:1:.:.:.:-0.000408587	0/1:129.501:285:138:5244:147:5650:-431.041,0.0,-394.507:147:52:285:138,147:5484,0,5001:.:1:1:.:.:.:-0.0130717
chr14	103342049	.	T	C	4162.81	REJECT	NS=2;DP=274;DPB=311.0;AC=2;AN=4;AF=0.5;RO=160;AO=151;PRO=0.0;PAO=0.0;QR=6034;QA=5669;PQR=0.0;PQA=0.0;SRF=64;SRR=96;SAF=60;SAR=91;SRP=16.9077;SAP=16.8301;AB=0.485531;ABP=3.57586;RUN=1;RPP=18.6708;RPPR=20.5992;RPL=92.0;RPR=59.0;EPP=10.6176;EPPR=8.43898;DPRA=0.0;ODDS=208.765;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993377;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6835;Dels=0.0;FS=0.0;HaplotypeScore=6.8962;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.595;QD=15.945;ReadPosRankSum=0.798;SOR=0.744;ClippingRankSum=0.547	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:39:1464:34:1241:-91.9659,0.0,-112.084:33:46:71:37,32:1034,0,1250:1:.:1:.:.:.:-0.000408587	0/1:129.501:238:121:4570:117:4428:-333.891,0.0,-346.66:117:49:238:121,117:4245,0,4384:.:1:1:.:.:.:-0.0130717
chr14	103370119	.	C	T	3830.34	REJECT	NS=2;DP=242;DPB=271.0;AC=2;AN=4;AF=0.5;RO=133;AO=138;PRO=0.0;PAO=0.0;QR=4956;QA=5138;PQR=0.0;PQA=0.0;SRF=60;SRR=73;SAF=68;SAR=70;SRP=5.76954;SAP=3.07324;AB=0.509225;ABP=3.21062;RUN=1;RPP=8.10854;RPPR=5.76954;RPL=60.0;RPR=78.0;EPP=3.07324;EPPR=3.41847;DPRA=0.0;ODDS=155.204;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5865;Dels=0.0;FS=1.636;HaplotypeScore=3.8503;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0865;QD=16.725;ReadPosRankSum=-1.664;SOR=0.52;ClippingRankSum=-0.994	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.106:57:33:1206:24:923:-67.7078,0.0,-93.1995:24:42:57:33,24:856,0,1135:1:.:1:.:.:.:-0.000408587	0/1:119.106:214:100:3750:114:4215:-321.653,0.0,-279.445:114:53:214:100,114:4080,0,3560:.:1:1:.:.:.:-0.0130717
chr14	103370163	.	C	T	4484.52	REJECT	NS=2;DP=268;DPB=300.0;AC=2;AN=4;AF=0.5;RO=143;AO=157;PRO=0.0;PAO=0.0;QR=5478;QA=5971;PQR=0.0;PQA=0.0;SRF=54;SRR=89;SAF=66;SAR=91;SRP=21.6121;SAP=11.6547;AB=0.523333;ABP=4.429;RUN=1;RPP=7.00747;RPPR=3.14697;RPL=70.0;RPR=87.0;EPP=7.00747;EPPR=8.49213;DPRA=0.0;ODDS=187.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2685;Dels=0.0;FS=1.4675;HaplotypeScore=4.8796;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9515;QD=19.045;ReadPosRankSum=1.5045;SOR=0.572;ClippingRankSum=-1.51	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.9965:63:29:1105:34:1293:-99.3908,0.0,-82.4513:34:54:63:29,35:1254,0,1002:1:.:1:.:.:.:-0.000408587	0/1:122.9965:237:114:4373:123:4678:-356.61,0.0,-329.193:123:52:237:114,123:4518,0,4209:.:1:1:.:.:.:-0.0130717
chr14	105258892	.	CA	TG	9943.885	REJECT	NS=2;DP=262;DPB=300.0;AC=4;AN=4;AF=1.0;RO=0;AO=296;PRO=0.0;PAO=4.0;QR=0;QA=11320;PQR=0.0;PQA=145.0;SRF=0;SRR=0;SAF=187;SAR=109;SRP=0.0;SAP=47.6429;AB=0.0;ABP=0.0;RUN=1;RPP=82.3571;RPPR=0.0;RPL=96.0;RPR=200.0;EPP=11.4908;EPPR=0.0;DPRA=0.0;ODDS=49.2435;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=2.0;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;JOINED;Dels=0.0;FS=0.0;HaplotypeScore=3.9327;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.915;SOR=1.264	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.0985:71:0:0:71:2679:-244.4,-19.5111,0.0:71:100:71:0,71:3235,217,0:1:.:1:.:.:.:-0.000408587	1/1:122.0985:226:0:0:225:8641:-787.224,-61.7573,0.0:225:100:225:0,225:9774,671,0:.:1:1:.:.:.:-0.0130717
chr15	22772394	.	C	G	8223.244999999999	REJECT	NS=2;DP=364;DPB=420.0;AC=3;AN=4;AF=0.75;RO=123;AO=297;PRO=0.0;PAO=0.0;QR=4691;QA=11409;PQR=0.0;PQA=0.0;SRF=44;SRR=79;SAF=129;SAR=168;SRP=24.6368;SAP=14.1309;AB=0.604502;ABP=32.5102;RUN=1;RPP=13.0195;RPPR=29.8624;RPL=167.0;RPR=130.0;EPP=4.24592;EPPR=6.98251;DPRA=0.0;ODDS=68.9813;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996633;PAIREDR=0.97561;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.439;Dels=0.0;FS=1.6315;HaplotypeScore=5.8786;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.072;QD=26.625;ReadPosRankSum=0.265;SOR=0.6785	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:109:4196:-377.641,-29.5322,0.0:109:100:109:0,109:4332,327,0:1:.:1:.:.:.:-0.00690701	0/1:129.501:310:123:4691:188:7213:-564.546,0.0,-337.719:188:60:310:121,188:7134,0,4241:.:1:1:.:.:.:-0.0142204
chr15	24032467	.	C	T	13075.25	REJECT	NS=2;DP=345;DPB=397.0;AC=4;AN=4;AF=1.0;RO=1;AO=396;PRO=0.0;PAO=0.0;QR=39;QA=15164;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=159;SAR=237;SRP=5.18177;SAP=36.372;AB=0.0;ABP=0.0;RUN=1;RPP=8.62542;RPPR=5.18177;RPL=214.0;RPR=182.0;EPP=12.6832;EPPR=5.18177;DPRA=0.0;ODDS=68.5101;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997475;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.177;Dels=0.0;FS=1.895;HaplotypeScore=7.7654;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.485;QD=30.19;ReadPosRankSum=1.414;SOR=1.057	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:103:3854:-346.871,-27.8785,0.0:100:100:100:0,98:3914,294,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:294:1:39:293:11310:-1013.77,-76.1171,0.0:293:100:294:1,293:12654,835,0:.:1:1:.:.:.:-0.0142204
chr15	34502467	.	G	A	12075.2	REJECT	NS=2;DP=320;DPB=367.0;AC=4;AN=4;AF=1.0;RO=0;AO=366;PRO=0.0;PAO=0.0;QR=0;QA=13989;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=151;SAR=215;SRP=0.0;SAP=27.3118;AB=0.0;ABP=0.0;RUN=1;RPP=9.08568;RPPR=0.0;RPL=199.0;RPR=167.0;EPP=7.021;EPPR=0.0;DPRA=0.0;ODDS=62.339;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.79;SOR=1.084	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:93:3541:-318.753,-25.1984,0.0:92:100:92:0,91:3790,273,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:274:0:0:273:10448:-939.79,-73.9317,0.0:273:100:273:0,273:11669,810,0:.:1:1:.:.:.:-0.0142204
chr15	34638834	.	G	A	298.77	PASS	SOMATIC;DP=138;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-3.683;Dels=0.0;FS=182.221;HaplotypeScore=10.7974;MLEAC=1;MLEAF=0.5;MQ=54.4;MQRankSum=2.089;QD=2.16;ReadPosRankSum=-2.115;SOR=5.889	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:120,18:138:99.0:327,0,4664:18:13:138:.:1:.:.:.:.:-0.0142204
chr15	34638841	.	A	G	2553.77	PASS	SOMATIC;DP=87;AC=1;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=5.022;Dels=0.03;FS=178.734;HaplotypeScore=8.8311;MLEAC=1;MLEAF=0.5;MQ=51.18;MQRankSum=-1.354;QD=29.35;ReadPosRankSum=2.713;SOR=8.379	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:18,65:84:99.0:2582,0,448:65:78:83:.:1:.:.:.:.:-0.0142204
chr15	34638841	.	AGGAGGTC	GGAAGGCT	2859.09	REJECT	NS=2;DP=117;DPB=124.75;AC=3;AN=4;AF=0.75;RO=20;AO=96;PRO=0.0;PAO=22.0;QR=589;QA=3630;PQR=0.0;PQA=790.0;SRF=20;SRR=0;SAF=16;SAR=80;SRP=46.4397;SAP=95.6598;AB=0.786517;ABP=66.471;RUN=1;RPP=211.472;RPPR=24.2907;RPL=96.0;RPR=0.0;EPP=95.6598;EPPR=24.2907;DPRA=0.0;ODDS=14.3297;GTI=0;TYPE=complex;CIGAR=1X1M1X3M2X;NUMALT=1;MEANALT=1.5;LEN=8;MQM=44.1146;MQMR=56.8;PAIRED=0.822917;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:62.2332:28:2:54:26:984:-100.292,-4.2816,0.0:26:93:28:.:.:1:.:.:.:-0.00690701	0/1:79.4217:89:18:535:70:2646:-237.031,0.0,-20.2495:70:80:88:.:.:1:.:.:.:-0.0142204
chr15	34638843	.	G	A	2377.77	PASS	SOMATIC;DP=82;AC=1;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=5.949;Dels=0.0;FS=114.357;HaplotypeScore=7.8646;MLEAC=1;MLEAF=0.5;MQ=50.6;MQRankSum=-2.305;QD=29.0;ReadPosRankSum=3.038;SOR=8.254	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:21,61:82:99.0:2406,0,391:61:74:82:.:1:.:.:.:.:-0.0142204
chr15	34638847	.	T	C	2412.77	PASS	SOMATIC;DP=79;AC=1;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=5.593;Dels=0.0;FS=154.534;HaplotypeScore=3.8602;MLEAC=1;MLEAF=0.5;MQ=50.21;MQRankSum=-2.881;QD=30.54;ReadPosRankSum=-0.707;SOR=8.254	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:18,61:79:99.0:2441,0,341:61:77:79:.:1:.:.:.:.:-0.0142204
chr15	34638848	.	C	T	2418.77	PASS	SOMATIC;DP=79;AC=1;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=5.756;Dels=0.0;FS=147.487;HaplotypeScore=5.765;MLEAC=1;MLEAF=0.5;MQ=50.21;MQRankSum=-2.11;QD=30.62;ReadPosRankSum=-1.642;SOR=8.254	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:18,61:79:99.0:2447,0,311:61:77:79:.:1:.:.:.:.:-0.0142204
chr15	34638862	.	T	C	73.7256	REJECT	NS=2;DP=26;DPB=26.0;AC=2;AN=4;AF=0.5;RO=19;AO=7;PRO=0.0;PAO=0.0;QR=573;QA=246;PQR=0.0;PQA=0.0;SRF=19;SRR=0;SAF=3;SAR=4;SRP=44.2683;SAP=3.32051;AB=0.269231;ABP=15.0369;RUN=1;RPP=18.2106;RPPR=3.12459;RPL=7.0;RPR=0.0;EPP=3.32051;EPPR=3.12459;DPRA=0.0;ODDS=3.82582;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=44.5714;MQMR=58.7368;PAIRED=0.428571;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:31.4743:6:2:64:4:145:-9.63247,0.0,-4.21037:4:67:6:.:.:1:.:.:.:-0.00690701	0/1:16.7121:20:17:509:3:101:-3.26494,0.0,-40.4914:3:15:20:.:.:1:.:.:.:-0.0142204
chr15	34638910	.	C	A	741.238	REJECT	NS=2;DP=26;DPB=29.0;AC=4;AN=4;AF=1.0;RO=0;AO=29;PRO=0.0;PAO=0.0;QR=0;QA=937;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=29;SAR=0;SRP=0.0;SAP=65.983;AB=0.0;ABP=0.0;RUN=1;RPP=4.88226;RPPR=0.0;RPL=12.0;RPR=17.0;EPP=4.88226;EPPR=0.0;DPRA=0.0;ODDS=7.50325;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.709;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.825;SOR=4.371	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:19.2943:3:0:0:5:172:-15.8144,-1.38356,0.0:3:100:3:0,2:77,6,0:1:.:1:.:.:.:-0.00690701	1/1:73.231:24:0:0:24:765:-69.0685,-6.4709,0.0:24:100:24:0,24:863,63,0:.:1:1:.:.:.:-0.0142204
chr15	34639015	.	C	T	1768.02	REJECT	NS=2;DP=67;DPB=75.0;AC=4;AN=4;AF=1.0;RO=1;AO=71;PRO=0.0;PAO=0.0;QR=15;QA=2232;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=71;SAR=0;SRP=5.18177;SAP=157.185;AB=0.0;ABP=0.0;RUN=1;RPP=4.50892;RPPR=5.18177;RPL=39.0;RPR=32.0;EPP=4.50892;EPPR=5.18177;DPRA=0.0;ODDS=13.7086;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=1.5;LEN=1;MQM=58.2958;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.55;Dels=0.0;FS=0.0;HaplotypeScore=21.2333;MLEAC=2;MLEAF=1.0;MQ=58.72;MQRankSum=1.064;QD=30.54;ReadPosRankSum=-1.003;SOR=5.839	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:44.76275:13:0:0:15:473:-42.8489,-4.07852,0.0:13:100:13:0,11:428,33,0:1:.:1:.:.:.:-0.00690701	1/1:118.049:60:1:15:56:1759:-156.769,-13.993,0.0:56:95:58:1,56:1888,144,0:.:1:1:.:.:.:-0.0142204
chr15	34639015	.	C	A	1768.02	REJECT	NS=2;DP=75;DPB=75.0;AC=0;AN=4;AF=0.0;RO=1;AO=3;PRO=0.0;PAO=0.0;QR=15;QA=47;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=3;SAR=0;SRP=5.18177;SAP=9.52472;AB=0.0;ABP=0.0;RUN=1;RPP=9.52472;RPPR=5.18177;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=5.18177;DPRA=4.0;ODDS=13.7086;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:56.5255:15:0:0:0:0:-42.8489,-42.8489,-42.8489:0:0:15:.:.:.:.:.:.:-0.00690701	0/0:137.098:60:1:15:3:47:-156.769,-153.605,-153.904:3:5:60:.:.:.:.:.:.:-0.0142204
chr15	34639463	.	C	CT	976.19	REJECT	NS=2;DP=69;DPB=103.556;AC=2;AN=4;AF=0.5;RO=9;AO=51;PRO=26.5;PAO=30.5;QR=332;QA=1503;PQR=929.5;PQA=1040.5;SRF=0;SRR=9;SAF=0;SAR=51;SRP=22.5536;SAP=113.755;AB=0.73913;ABP=37.2818;RUN=1;RPP=29.6215;RPPR=5.18177;RPL=38.0;RPR=13.0;EPP=29.6215;EPPR=5.18177;DPRA=0.0;ODDS=5.59969;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.478;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=2.6225;QD=10.245;RPA=13,14;RU=T;ReadPosRankSum=-0.643;SOR=2.872;STR;ClippingRankSum=-0.217	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:21.1672:14:2:77:10:288:-23.8528,0.0,-3.45994:11:81:13:3,12:268,0,18:1:.:1:.:.:.:-0.00690701	0/1:32.0644:75:7:255:41:1215:-104.249,0.0,-9.26349:45:85:53:9,50:958,0,8:.:1:1:.:.:.:-0.0142204
chr15	34640054	.	AAAAAAT	A	4594.17	REJECT	NS=2;DP=158;DPB=333.75;AC=4;AN=4;AF=1.0;RO=0;AO=153;PRO=203.5;PAO=209.5;QR=0;QA=5056;PQR=7422.5;PQA=7627.5;SRF=0;SRR=0;SAF=106;SAR=47;SRP=0.0;SAP=52.4148;AB=0.0;ABP=0.0;RUN=1;RPP=52.4148;RPPR=0.0;RPL=47.0;RPR=106.0;EPP=3.36512;EPPR=0.0;DPRA=0.0;ODDS=25.4328;GTI=0;TYPE=del;CIGAR=1M6D45M;NUMALT=1;MEANALT=3.5;LEN=6;MQM=60.5882;MQMR=0.0;PAIRED=0.993464;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=34640060;HOMLEN=35;HOMSEQ=AAAAATAAAAATAAAAATAAAAATAAAAATAAAAA;SVLEN=-6;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.615;QD=30.495;RPA=6,5;RU=AAAAAT;SOR=1.7225;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:104.7025:41:0:0:32:1078:-101.854,-9.17027,0.0:48:100:48:7,71:2085,147,0:1:.:1:1:.:.:-0.00690701	1/1:129.501:144:0:0:121:3978:-371.244,-33.6218,0.0:126:100:126:16,226:9496,379,0:.:1:1:1:.:.:-0.0142204
chr15	34640218	.	C	T	17874.5	REJECT	NS=2;DP=473;DPB=534.0;AC=4;AN=4;AF=1.0;RO=0;AO=534;PRO=0.0;PAO=0.0;QR=0;QA=20268;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=277;SAR=257;SRP=0.0;SAP=4.63687;AB=0.0;ABP=0.0;RUN=1;RPP=3.27055;RPPR=0.0;RPL=271.0;RPR=263.0;EPP=3.41694;EPPR=0.0;DPRA=0.0;ODDS=79.6827;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992509;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8263;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.37;SOR=0.788	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.3625:118:0:0:121:4552:-409.607,-32.7307,0.0:118:100:118:0,116:4757,347,0:1:.:1:.:.:.:-0.00690701	1/1:126.3625:412:0:0:413:15716:-1413.13,-111.473,0.0:412:100:412:0,412:17596,1231,0:.:1:1:.:.:.:-0.0142204
chr15	34640378	.	T	C	18584.85	REJECT	NS=2;DP=499;DPB=567.0;AC=4;AN=4;AF=1.0;RO=0;AO=567;PRO=0.0;PAO=0.0;QR=0;QA=21280;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=285;SAR=282;SRP=0.0;SAP=3.04477;AB=0.0;ABP=0.0;RUN=1;RPP=4.39284;RPPR=0.0;RPL=274.0;RPR=293.0;EPP=3.32051;EPPR=0.0;DPRA=0.0;ODDS=88.5051;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996473;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=17.4088;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.545;SOR=0.7355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.735:135:0:0:135:5112:-460.016,-36.5622,0.0:135:100:135:0,135:5469,405,0:1:.:1:.:.:.:-0.00690701	1/1:128.735:432:0:0:432:16168:-1453.98,-116.816,0.0:432:100:432:0,432:18104,1267,0:.:1:1:.:.:.:-0.0142204
chr15	38614525	.	G	A	10460.0	REJECT	NS=2;DP=391;DPB=447.0;AC=2;AN=4;AF=0.5;RO=109;AO=338;PRO=0.0;PAO=0.0;QR=4185;QA=13057;PQR=0.0;PQA=0.0;SRF=62;SRR=47;SAF=158;SAR=180;SRP=7.4927;SAP=6.11975;AB=0.756152;ABP=257.762;RUN=1;RPP=3.42147;RPPR=4.62396;RPL=173.0;RPR=165.0;EPP=9.58896;EPPR=4.62396;DPRA=0.0;ODDS=150.825;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994083;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.086;Dels=0.0;FS=4.4605;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8525;QD=24.15;ReadPosRankSum=0.3275;SOR=0.6135;ClippingRankSum=0.923	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:63:2432:47:1827:-134.623,0.0,-189.065:46:43:109:62,46:1564,0,2272:1:.:1:.:.:.:-0.00690701	0/1:129.501:336:46:1753:291:11230:-918.777,0.0,-66.385:290:86:336:46,289:11489,0,952:.:1:1:.:.:.:-0.0142204
chr15	38631930	.	C	A	6546.76	REJECT	NS=2;DP=261;DPB=303.0;AC=2;AN=4;AF=0.5;RO=88;AO=215;PRO=0.0;PAO=0.0;QR=3296;QA=8316;PQR=0.0;PQA=0.0;SRF=52;SRR=36;SAF=132;SAR=83;SRP=9.32731;SAP=27.2601;AB=0.709571;ABP=118.6;RUN=1;RPP=23.4625;RPPR=7.84676;RPL=85.0;RPR=130.0;EPP=11.5043;EPPR=5.47788;DPRA=0.0;ODDS=179.138;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990698;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.929;Dels=0.0;FS=0.7475;HaplotypeScore=4.8376;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.75;QD=23.49;ReadPosRankSum=0.3005;SOR=0.7055;ClippingRankSum=1.469	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:48:1757:36:1412:-104.362,0.0,-135.424:36:43:84:48,36:1255,0,1633:1:.:1:.:.:.:-0.00690701	0/1:129.501:219:40:1539:179:6904:-561.743,0.0,-79.1146:179:82:219:40,179:7119,0,1071:.:1:1:.:.:.:-0.0142204
chr15	38643574	.	T	C	10660.1	REJECT	NS=2;DP=409;DPB=469.0;AC=2;AN=4;AF=0.5;RO=120;AO=349;PRO=0.0;PAO=0.0;QR=4628;QA=13342;PQR=0.0;PQA=0.0;SRF=71;SRR=49;SAF=181;SAR=168;SRP=11.7686;SAP=4.06182;AB=0.744136;ABP=245.812;RUN=1;RPP=5.75419;RPPR=3.08268;RPL=164.0;RPR=185.0;EPP=5.75419;EPPR=3.29983;DPRA=0.0;ODDS=212.672;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991404;PAIREDR=0.991667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2175;Dels=0.0;FS=4.4605;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.156;QD=24.095;ReadPosRankSum=-0.731;SOR=0.444;ClippingRankSum=-1.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:66:2531:52:1977:-145.941,0.0,-195.817:51:44:116:63,51:1738,0,2250:1:.:1:.:.:.:-0.00690701	0/1:129.501:350:54:2097:297:11365:-927.128,0.0,-93.552:296:85:350:54,295:11611,0,1313:.:1:1:.:.:.:-0.0142204
chr15	39000056	.	T	C	3752.7799999999997	REJECT	NS=2;DP=240;DPB=279.0;AC=2;AN=4;AF=0.5;RO=142;AO=137;PRO=0.0;PAO=0.0;QR=5494;QA=5268;PQR=0.0;PQA=0.0;SRF=84;SRR=58;SAF=82;SAR=55;SRP=13.3477;SAP=14.5651;AB=0.491039;ABP=3.20488;RUN=1;RPP=101.931;RPPR=58.0617;RPL=29.0;RPR=108.0;EPP=3.40655;EPPR=3.25497;DPRA=0.0;ODDS=231.513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.146;MQMR=60.0704;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.822;Dels=0.0;FS=5.06;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.407;QD=17.4;ReadPosRankSum=-0.0845;SOR=0.918;ClippingRankSum=-3.261	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:41:1582:36:1390:-104.276,0.0,-121.562:36:47:76:40,36:1282,0,1422:1:.:1:.:.:.:-0.00690701	0/1:129.501:202:101:3912:101:3878:-294.142,0.0,-297.217:101:50:202:101,101:3724,0,3792:.:1:1:.:.:.:-0.0142204
chr15	39000074	.	C	T	2523.18	PASS	SOMATIC;NS=2;DP=347;DPB=347.0;AC=1;AN=3;AF=0.25;RO=252;AO=95;PRO=0.0;PAO=0.0;QR=9629;QA=3625;PQR=0.0;PQA=0.0;SRF=142;SRR=110;SAF=59;SAR=36;SRP=11.8341;SAP=15.102;AB=0.381526;ABP=33.3673;RUN=1;RPP=5.77607;RPPR=24.5527;RPL=42.0;RPR=53.0;EPP=4.13032;EPPR=7.18091;DPRA=2.54082;ODDS=62.103;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1053;MQMR=60.0794;PAIRED=1.0;PAIREDR=0.996032;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.447;Dels=0.0;FS=2.26;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-0.147;QD=13.3;ReadPosRankSum=0.292;SOR=0.877	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:94:98:3727:0:0:0.0,-26.545,-335.471:0:0:94:91,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:248:154:5902:95:3625:-259.051,0.0,-463.452:95:38:248:150,92:38.0:0.378:2:3327,0,5793:.:1:1:.:.:1:-0.0142204
chr15	39000104	.	C	CTTTTATA	6854.34	REJECT	NS=2;DP=299;DPB=620.143;AC=2;AN=4;AF=0.5;RO=82;AO=239;PRO=41.0;PAO=43.0;QR=3089;QA=8595;PQR=1462.0;PQA=1532.0;SRF=38;SRR=44;SAF=127;SAR=112;SRP=3.96363;SAP=5.05457;AB=0.737654;ABP=161.957;RUN=1;RPP=3.09207;RPPR=3.96363;RPL=121.0;RPR=118.0;EPP=6.29022;EPPR=3.11623;DPRA=0.0;ODDS=67.5888;GTI=0;TYPE=ins;CIGAR=1M7I6M;NUMALT=1;MEANALT=2.5;LEN=7;MQM=60.0;MQMR=60.0;PAIRED=0.995816;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=39000104;HOMLEN=5;HOMSEQ=TTTTA;SVLEN=7;SVTYPE=INS;BaseQRankSum=0.4715;FS=4.947;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.5905;QD=26.33;ReadPosRankSum=-1.187;SOR=0.824;ClippingRankSum=-0.09	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:56:2089:44:1540:-114.676,0.0,-160.708:55:50:100:36,55:2320,0,3246:1:.:1:1:.:.:-0.00690701	0/1:129.501:249:26:1000:195:7055:-577.46,0.0,-29.8892:229:90:255:22,262:20981,0,1682:.:1:1:1:.:.:-0.0142204
chr15	40681676	.	T	A	1578.22	PASS	SOMATIC;NS=2;DP=248;DPB=248.0;AC=1;AN=3;AF=0.25;RO=183;AO=65;PRO=0.0;PAO=0.0;QR=7041;QA=2459;PQR=0.0;PQA=0.0;SRF=133;SRR=50;SAF=42;SAR=23;SRP=84.755;SAP=15.0703;AB=0.353261;ABP=37.4234;RUN=1;RPP=70.66;RPPR=62.8267;RPL=10.0;RPR=55.0;EPP=4.64726;EPPR=17.5461;DPRA=2.875;ODDS=40.9447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989071;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.802;Dels=0.0;FS=6.278;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.417;QD=11.73;ReadPosRankSum=-0.62;SOR=0.347	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.211:62:64:2480:0:0:0.0,-17.3561,-223.363:0:0:62:61,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:121.1055:184:119:4561:65:2459:-171.39,0.0,-360.511:65:35:184:117,64:37.0:0.354:2:2186,0,4545:.:1:1:.:.:1:-0.0142204
chr15	40683780	.	G	A	2550.08	PASS	SOMATIC;NS=2;DP=384;DPB=384.0;AC=1;AN=3;AF=0.25;RO=286;AO=98;PRO=0.0;PAO=0.0;QR=10920;QA=3738;PQR=0.0;PQA=0.0;SRF=123;SRR=163;SAF=39;SAR=59;SRP=15.1584;SAP=11.8735;AB=0.356618;ABP=51.581;RUN=1;RPP=3.09893;RPPR=19.0762;RPL=50.0;RPR=48.0;EPP=4.4284;EPPR=17.7095;DPRA=0.0;ODDS=67.6447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982517;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.283;Dels=0.0;FS=1.54;HaplotypeScore=3.8709;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.487;QD=12.3;ReadPosRankSum=0.898;SOR=0.799	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:109:111:4237:1:16:0.0,-28.8993,-379.902:1:1:109:105,1:.:0.009434:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:270:175:6683:97:3722:-261.148,0.0,-527.469:97:36:270:168,94:38.0:0.358:2:3349,0,6556:.:1:1:.:.:1:-0.0142204
chr15	40684232	.	G	A	2443.29	PASS	SOMATIC;NS=2;DP=381;DPB=381.0;AC=1;AN=3;AF=0.25;RO=284;AO=95;PRO=0.0;PAO=0.0;QR=10856;QA=3668;PQR=0.0;PQA=0.0;SRF=110;SRR=174;SAF=32;SAR=63;SRP=34.3284;SAP=24.9765;AB=0.338078;ABP=67.0031;RUN=1;RPP=13.0905;RPPR=3.49965;RPL=58.0;RPR=37.0;EPP=19.6735;EPPR=56.9607;DPRA=2.81;ODDS=63.3461;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.335;Dels=0.0;FS=0.484;HaplotypeScore=7.9321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.599;QD=11.54;ReadPosRankSum=0.096;SOR=0.76	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:147.241:97:100:3819:0:0:0.0,-27.0849,-343.741:0:0:97:95,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:123.1205:281:184:7037:95:3668:-254.359,0.0,-557.411:95:34:279:176,90:38.0:0.335:2:3270,0,7042:.:1:1:.:.:1:-0.0142204
chr15	40685406	.	A	T	2952.95	PASS	SOMATIC;NS=2;DP=395;DPB=395.0;AC=1;AN=3;AF=0.25;RO=286;AO=109;PRO=0.0;PAO=0.0;QR=11031;QA=4278;PQR=0.0;PQA=0.0;SRF=154;SRR=132;SAF=54;SAR=55;SRP=6.6851;SAP=3.03022;AB=0.353896;ABP=60.1172;RUN=1;RPP=8.76769;RPPR=12.8503;RPL=63.0;RPR=46.0;EPP=5.42083;EPPR=10.7851;DPRA=3.54023;ODDS=55.3092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996503;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=4.349;Dels=0.0;FS=6.373;HaplotypeScore=7.9307;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.036;QD=12.5;ReadPosRankSum=0.561;SOR=0.453	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.673:86:87:3372:0:0:0.0,-23.5945,-303.578:0:0:86:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:118.8365:308:199:7659:109:4278:-301.337,0.0,-605.458:109:35:308:191,104:39.0:0.352:2:3877,0,7646:.:1:1:.:.:1:-0.0142204
chr15	41991315	.	A	T	7888.27	REJECT	NS=2;DP=378;DPB=424.0;AC=3;AN=4;AF=0.75;RO=130;AO=293;PRO=0.0;PAO=0.0;QR=4989;QA=10741;PQR=0.0;PQA=0.0;SRF=65;SRR=65;SAF=133;SAR=160;SRP=3.0103;SAP=8.41304;AB=0.606607;ABP=35.8823;RUN=1;RPP=3.01771;RPPR=3.61163;RPL=147.0;RPR=146.0;EPP=51.635;EPPR=12.6316;DPRA=0.0;ODDS=57.6776;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993174;PAIREDR=0.992308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.176;Dels=0.0;FS=0.0;HaplotypeScore=12.661;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.033;QD=25.28;ReadPosRankSum=-1.371;SOR=0.9635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:91:3343:-300.932,-24.6231,0.0:90:100:90:0,89:3343,265,0:1:.:1:.:.:.:-0.00690701	0/1:129.501:332:130:4989:202:7398:-575.564,0.0,-358.919:201:61:331:130,201:7153,0,4611:.:1:1:.:.:.:-0.0142204
chr15	41991391	.	CT	C	467.874	REJECT	NS=2;DP=131;DPB=201.4;AC=2;AN=4;AF=0.5;RO=96;AO=26;PRO=89.0;PAO=47.0;QR=3647;QA=975;PQR=3233.5;PQA=1667.5;SRF=17;SRR=79;SAF=5;SAR=21;SRP=89.9597;SAP=24.391;AB=0.198473;ABP=106.462;RUN=1;RPP=24.391;RPPR=50.8732;RPL=21.0;RPR=5.0;EPP=6.01695;EPPR=12.0581;DPRA=0.0;ODDS=13.9044;GTI=0;TYPE=del;CIGAR=16M1D18M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989583;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:30:14:520:14:516:-47.4455,0.0,-65.2074:14:50:28:.:.:1:.:.:.:-0.00690701	0/1:60.3859:101:82:3127:12:459:-8.76183,0.0,-372.38:12:13:94:.:.:1:.:.:.:-0.0142204
chr15	42026764	.	C	T	7843.155000000001	REJECT	NS=2;DP=380;DPB=432.0;AC=3;AN=4;AF=0.75;RO=135;AO=296;PRO=0.0;PAO=0.0;QR=5122;QA=10936;PQR=0.0;PQA=0.0;SRF=69;SRR=66;SAF=130;SAR=166;SRP=3.15506;SAP=12.5178;AB=0.585366;ABP=23.7717;RUN=1;RPP=29.4201;RPPR=8.81698;RPL=178.0;RPR=118.0;EPP=45.3834;EPPR=3.15506;DPRA=0.0;ODDS=65.7944;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996622;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.21;Dels=0.0;FS=6.295;HaplotypeScore=6.8297;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.342;QD=25.98;ReadPosRankSum=-0.513;SOR=0.9365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:104:3828:-344.554,-28.1482,0.0:102:100:102:0,100:3894,299,0:1:.:1:.:.:.:-0.00690701	0/1:129.501:328:135:5122:192:7108:-550.847,0.0,-372.184:192:59:327:135,192:6898,0,4717:.:1:1:.:.:.:-0.0142204
chr15	42041712	.	G	A	7403.05	REJECT	NS=2;DP=330;DPB=370.0;AC=3;AN=4;AF=0.75;RO=113;AO=257;PRO=0.0;PAO=0.0;QR=4294;QA=9894;PQR=0.0;PQA=0.0;SRF=48;SRR=65;SAF=121;SAR=136;SRP=8.56389;SAP=4.91139;AB=0.611684;ABP=34.5377;RUN=1;RPP=3.08634;RPPR=3.02952;RPL=130.0;RPR=127.0;EPP=3.69469;EPPR=17.0192;DPRA=0.0;ODDS=50.2975;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996109;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.479;Dels=0.0;FS=1.003;HaplotypeScore=4.846;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.645;QD=26.12;ReadPosRankSum=0.041;SOR=0.6495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.1465:79:0:0:79:3036:-273.357,-21.418,0.0:79:100:79:0,79:3391,238,0:1:.:1:.:.:.:-0.00690701	0/1:122.1465:291:113:4294:178:6858:-538.027,0.0,-307.442:178:61:291:113,178:6781,0,3948:.:1:1:.:.:.:-0.0142204
chr15	54009339	.	C	T	5129.9	REJECT	NS=2;DP=359;DPB=408.0;AC=2;AN=4;AF=0.5;RO=219;AO=188;PRO=0.0;PAO=0.0;QR=8418;QA=7207;PQR=0.0;PQA=0.0;SRF=107;SRR=112;SAF=67;SAR=121;SRP=3.25818;SAP=36.6912;AB=0.460784;ABP=8.46027;RUN=1;RPP=12.0658;RPPR=12.539;RPL=80.0;RPR=108.0;EPP=53.3238;EPPR=19.6781;DPRA=0.0;ODDS=313.395;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994681;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.219;Dels=0.0;FS=11.1565;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2205;QD=16.48;ReadPosRankSum=0.4005;SOR=1.3595;ClippingRankSum=1.15	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:48:1855:49:1849:-140.154,0.0,-140.691:48:51:96:47,48:1622,0,1625:1:.:1:.:.:.:-0.00690701	0/1:129.501:311:171:6563:139:5358:-397.97,0.0,-506.349:139:45:310:171,139:5061,0,6398:.:1:1:.:.:.:-0.0142204
chr15	63004762	.	T	TA	10922.8	REJECT	NS=2;DP=285;DPB=411.8;AC=4;AN=4;AF=1.0;RO=0;AO=325;PRO=11.0;PAO=19.0;QR=0;QA=12073;PQR=337.0;PQA=626.0;SRF=0;SRR=0;SAF=217;SAR=108;SRP=0.0;SAP=82.3926;AB=0.0;ABP=0.0;RUN=1;RPP=44.7093;RPPR=0.0;RPL=123.0;RPR=202.0;EPP=38.6158;EPPR=0.0;DPRA=0.0;ODDS=56.6564;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.1231;MQMR=0.0;PAIRED=0.996923;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=63004762;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.945;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.125;MQRankSum=-1.575;QD=32.035;ReadPosRankSum=1.693;SOR=1.1915;ClippingRankSum=0.984	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:0:0:83:3048:-277.998,-22.7305,0.0:87:99:88:19,97:3490,262,0:1:.:1:1:.:.:-0.00690701	1/1:129.501:243:0:0:242:9025:-834.197,-67.3681,0.0:243:100:243:64,300:11030,731,0:.:1:1:1:.:.:-0.0142204
chr15	66745890	.	G	A	12881.15	REJECT	NS=2;DP=341;DPB=391.0;AC=4;AN=4;AF=1.0;RO=0;AO=391;PRO=0.0;PAO=0.0;QR=0;QA=14961;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=158;SAR=233;SRP=0.0;SAP=34.2495;AB=0.0;ABP=0.0;RUN=1;RPP=16.3446;RPPR=0.0;RPL=220.0;RPR=171.0;EPP=34.2495;EPPR=0.0;DPRA=0.0;ODDS=66.7202;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994885;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.65;SOR=1.226	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:99:0:0:100:3796:-341.698,-27.1011,0.0:99:100:99:0,99:3972,298,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:291:0:0:291:11165:-1004.24,-78.8015,0.0:291:100:291:0,291:12449,861,0:.:1:1:.:.:.:-0.0142204
chr15	67391394	.	GT	G	6762.62	REJECT	NS=2;DP=186;DPB=167.4;AC=4;AN=4;AF=1.0;RO=0;AO=201;PRO=5.0;PAO=9.0;QR=0;QA=7558;PQR=184.0;PQA=332.0;SRF=0;SRR=0;SAF=69;SAR=132;SRP=0.0;SAP=45.8888;AB=0.0;ABP=0.0;RUN=1;RPP=92.4728;RPPR=0.0;RPL=146.0;RPR=55.0;EPP=3.10753;EPPR=0.0;DPRA=0.0;ODDS=30.5756;GTI=0;TYPE=del;CIGAR=1M1D3M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=67391395;HOMLEN=1;HOMSEQ=T;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.125;QD=28.395;RPA=2,1;RU=T;SOR=1.5835;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:115.838:43:0:0:42:1609:-145.039,-11.4038,0.0:42:100:44:13,41:1649,133,0:1:.:1:1:.:.:-0.00690701	1/1:123.8045:165:0:0:159:5949:-548.552,-44.1011,0.0:159:100:164:45,156:6938,494,0:.:1:1:1:.:.:-0.0142204
chr15	67457335	.	A	G	13997.4	REJECT	NS=2;DP=372;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=15977;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=209;SAR=212;SRP=0.0;SAP=3.05672;AB=0.0;ABP=0.0;RUN=1;RPP=3.6344;RPPR=0.0;RPL=205.0;RPR=216.0;EPP=10.0715;EPPR=0.0;DPRA=0.0;ODDS=64.8472;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992874;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.924;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.765;SOR=0.716	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:97:3700:-333.071,-26.2877,0.0:96:100:96:0,95:3983,285,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:324:0:0:324:12277:-1103.43,-86.9304,0.0:324:100:324:0,324:13708,951,0:.:1:1:.:.:.:-0.0142204
chr15	73533057	.	C	A	1494.94	REJECT	NS=2;DP=364;DPB=418.0;AC=2;AN=4;AF=0.5;RO=338;AO=80;PRO=0.0;PAO=0.0;QR=12735;QA=3102;PQR=0.0;PQA=0.0;SRF=158;SRR=180;SAF=32;SAR=48;SRP=6.11975;SAP=9.95901;AB=0.191388;ABP=348.804;RUN=1;RPP=6.91895;RPPR=3.036;RPL=46.0;RPR=34.0;EPP=3.44459;EPPR=21.7441;DPRA=0.0;ODDS=70.9787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988166;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.55;Dels=0.0;FS=1.681;HaplotypeScore=1.966;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.499;QD=7.46;ReadPosRankSum=2.1885;SOR=0.853;ClippingRankSum=0.912	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6295:105:60:2263:47:1812:-134.12,0.0,-174.683:46:44:105:57,46:1424,0,1889:1:.:1:.:.:.:-0.00690701	0/1:118.6295:310:278:10472:33:1290:-31.866,0.0,-857.716:33:11:310:277,33:535,0,10706:.:1:1:.:.:.:-0.0142204
chr15	78003964	.	C	T	3109.31	PASS	SOMATIC;NS=2;DP=420;DPB=420.0;AC=1;AN=3;AF=0.25;RO=304;AO=116;PRO=0.0;PAO=0.0;QR=11726;QA=4498;PQR=0.0;PQA=0.0;SRF=171;SRR=133;SAF=67;SAR=49;SRP=13.3248;SAP=9.07545;AB=0.371795;ABP=47.5533;RUN=1;RPP=17.6865;RPPR=16.8392;RPL=44.0;RPR=72.0;EPP=24.6501;EPPR=13.3248;DPRA=2.88889;ODDS=68.34;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.045;Dels=0.0;FS=0.898;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.084;QD=13.12;ReadPosRankSum=-1.365;SOR=0.769	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:105:108:4133:0:0:0.0,-29.2537,-371.97:0:0:105:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:312:196:7593:116:4498:-320.45,0.0,-598.404:116:37:312:188,111:38.0:0.369:2:4121,0,7551:.:1:1:.:.:1:-0.0142204
chr15	80259955	.	TGTAA	T	4284.86	REJECT	NS=2;DP=331;DPB=268.167;AC=2;AN=4;AF=0.5;RO=197;AO=169;PRO=25.0;PAO=4.0;QR=7478;QA=6087;PQR=806.5;PQA=19.5;SRF=130;SRR=67;SAF=115;SAR=54;SRP=46.7594;SAP=50.8212;AB=0.459239;ABP=8.32097;RUN=1;RPP=33.8606;RPPR=7.87131;RPL=60.0;RPR=109.0;EPP=7.64877;EPPR=3.90314;DPRA=0.0;ODDS=221.156;GTI=0;TYPE=del;CIGAR=1M4D1M;NUMALT=1;MEANALT=2.0;LEN=4;MQM=60.2367;MQMR=59.8274;PAIRED=0.988166;PAIREDR=0.974619;technology.ILLUMINA=1.0;MQ0=0;END=80259959;HOMLEN=2;HOMSEQ=GT;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=1.6675;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.898;QD=18.415;ReadPosRankSum=1.4815;SOR=0.7835;ClippingRankSum=-0.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3005:86:48:1790:37:1357:-98.5949,0.0,-144.264:37:44:85:37,42:1400,0,2721:1:.:1:1:.:.:-0.00690701	0/1:118.3005:288:149:5688:132:4730:-344.264,0.0,-494.548:132:47:280:107,156:8364,0,9577:.:1:1:1:.:.:-0.0142204
chr15	80259964	.	C	T	5078.72	REJECT	NS=2;DP=343;DPB=390.0;AC=2;AN=4;AF=0.5;RO=207;AO=180;PRO=0.0;PAO=0.0;QR=7797;QA=6955;PQR=0.0;PQA=0.0;SRF=133;SRR=74;SAF=118;SAR=62;SRP=39.5267;SAP=40.8422;AB=0.461538;ABP=8.02139;RUN=1;RPP=24.2907;RPPR=8.55962;RPL=69.0;RPR=111.0;EPP=13.8677;EPPR=9.56668;DPRA=0.0;ODDS=263.391;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.1111;MQMR=59.8357;PAIRED=0.988889;PAIREDR=0.975845;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.3945;Dels=0.0;FS=0.4575;HaplotypeScore=3.8982;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.187;QD=16.765;ReadPosRankSum=1.615;SOR=0.7495;ClippingRankSum=-0.918	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6335:90:48:1735:40:1559:-116.525,0.0,-132.349:40:44:89:50,40:1499,0,2641:1:.:1:.:.:.:-0.00690701	0/1:117.6335:297:159:6062:140:5396:-404.372,0.0,-463.427:140:47:297:156,140:5171,0,5769:.:1:1:.:.:.:-0.0142204
chr15	80260014	.	T	C	5482.57	REJECT	NS=2;DP=363;DPB=416.0;AC=2;AN=4;AF=0.5;RO=218;AO=198;PRO=0.0;PAO=0.0;QR=8270;QA=7473;PQR=0.0;PQA=0.0;SRF=100;SRR=118;SAF=89;SAR=109;SRP=6.23763;SAP=7.39711;AB=0.475962;ABP=5.09825;RUN=1;RPP=24.2425;RPPR=4.44467;RPL=121.0;RPR=77.0;EPP=30.4279;EPPR=25.9602;DPRA=0.0;ODDS=277.938;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0404;MQMR=59.9587;PAIRED=0.989899;PAIREDR=0.986239;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1285;Dels=0.0;FS=2.5695;HaplotypeScore=5.8629;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.3385;QD=15.885;ReadPosRankSum=-0.8285;SOR=0.678;ClippingRankSum=-0.173	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:61:2278:43:1664:-121.606,0.0,-176.859:42:41:103:60,42:1457,0,2084:1:.:1:.:.:.:-0.00690701	0/1:129.501:311:157:5992:155:5809:-438.018,0.0,-454.5:155:50:311:155,155:5533,0,5686:.:1:1:.:.:.:-0.0142204
chr15	80263217	.	C	T	6830.475	REJECT	NS=2;DP=369;DPB=424.0;AC=2;AN=4;AF=0.5;RO=180;AO=243;PRO=0.0;PAO=0.0;QR=6996;QA=9115;PQR=0.0;PQA=0.0;SRF=96;SRR=84;SAF=125;SAR=118;SRP=4.74748;SAP=3.44817;AB=0.573113;ABP=22.697;RUN=1;RPP=8.59536;RPPR=6.09862;RPL=109.0;RPR=134.0;EPP=3.44817;EPPR=4.74748;DPRA=0.0;ODDS=318.126;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8;Dels=0.0;FS=2.8465;HaplotypeScore=7.7765;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.626;QD=20.52;ReadPosRankSum=0.2725;SOR=0.621;ClippingRankSum=-1.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:48:1874:62:2304:-177.575,0.0,-138.852:61:56:108:47,60:2145,0,1630:1:.:1:.:.:.:-0.00690701	0/1:129.501:314:132:5122:181:6811:-527.862,0.0,-375.931:181:58:313:132,181:6703,0,4816:.:1:1:.:.:.:-0.0142204
chr15	80263345	.	A	C	5941.935	REJECT	NS=2;DP=357;DPB=409.0;AC=2;AN=4;AF=0.5;RO=197;AO=211;PRO=0.0;PAO=0.0;QR=7570;QA=7994;PQR=0.0;PQA=0.0;SRF=98;SRR=99;SAF=93;SAR=118;SRP=3.02132;SAP=9.44239;AB=0.515892;ABP=3.90756;RUN=1;RPP=4.74954;RPPR=3.55041;RPL=112.0;RPR=99.0;EPP=3.02059;EPPR=3.28587;DPRA=0.0;ODDS=320.09;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994924;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2415;Dels=0.0;FS=3.3455;HaplotypeScore=5.8462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5015;QD=17.435;ReadPosRankSum=-0.656;SOR=0.857;ClippingRankSum=0.003	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0485:102:52:1973:50:1860:-139.772,0.0,-149.982:50:49:102:52,50:1630,0,1732:1:.:1:.:.:.:-0.00690701	0/1:118.0485:306:145:5597:161:6134:-468.838,0.0,-420.579:161:53:305:144,161:5895,0,5365:.:1:1:.:.:.:-0.0142204
chr15	80263406	.	C	T	4927.99	REJECT	NS=2;DP=291;DPB=332.0;AC=2;AN=4;AF=0.5;RO=160;AO=172;PRO=0.0;PAO=0.0;QR=6139;QA=6628;PQR=0.0;PQA=0.0;SRF=58;SRR=102;SAF=68;SAR=104;SRP=29.2851;SAP=19.3721;AB=0.518072;ABP=3.95214;RUN=1;RPP=12.9082;RPPR=18.6992;RPL=100.0;RPR=72.0;EPP=4.82828;EPPR=15.2248;DPRA=0.0;ODDS=266.969;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.875;PAIRED=0.994186;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6825;Dels=0.0;FS=2.0575;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4965;QD=18.29;ReadPosRankSum=2.015;SOR=0.4925;ClippingRankSum=-1.854	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.912:79:41:1554:40:1565:-118.946,0.0,-117.956:39:49:79:40,38:1359,0,1415:1:.:1:.:.:.:-0.00690701	0/1:119.912:250:119:4585:132:5063:-387.433,0.0,-344.447:132:53:250:118,132:4908,0,4345:.:1:1:.:.:.:-0.0142204
chr15	88576407	.	T	TTA	280.332	REJECT	NS=2;DP=59;DPB=100.978;AC=2;AN=4;AF=0.5;RO=17;AO=18;PRO=17.3167;PAO=17.65;QR=640;QA=484;PQR=633.633;PQA=638.967;SRF=1;SRR=16;SAF=0;SAR=18;SRP=31.7504;SAP=42.0968;AB=0.305085;ABP=22.4799;RUN=1;RPP=4.9405;RPPR=4.1599;RPL=7.0;RPR=11.0;EPP=4.9405;EPPR=3.13803;DPRA=0.0;ODDS=2.0219;GTI=0;TYPE=ins;CIGAR=1M2I44M;NUMALT=5;MEANALT=7.0;LEN=2;MQM=58.8889;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.131;FS=3.452;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-0.02;QD=8.47;RPA=20,21;RU=TA;ReadPosRankSum=-0.099;SOR=2.03;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:9.25076:15:7:262:2:73:-4.1377,0.0,-21.1738:2:14:14:.:.:.:.:1:.:.:.:-0.00690701	0/1:112.1895:67:10:378:16:411:-33.3917,0.0,-26.2672:23:54:41:14,30:800,0,347:.:1:1:.:.:.:-0.0142204
chr15	88576407	.	T	TTATA	280.332	REJECT	NS=2;DP=59;DPB=100.978;AC=2;AN=2;AF=0.0;RO=17;AO=11;PRO=17.3167;PAO=17.65;QR=640;QA=289;PQR=633.633;PQA=638.967;SRF=1;SRR=16;SAF=0;SAR=11;SRP=31.7504;SAP=26.8965;AB=0.186441;ABP=53.3958;RUN=1;RPP=7.94546;RPPR=4.1599;RPL=3.0;RPR=8.0;EPP=7.94546;EPPR=3.13803;DPRA=0.0;ODDS=2.0219;GTI=0;TYPE=ins;CIGAR=1M4I44M;NUMALT=5;MEANALT=7.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.25076:15:7:262:2:61:-4.1377,-1.07957,-22.2541:2:14:14:.:.:1:.:.:.:-0.00690701	./1:125.379:44:10:378:9:228:-33.3917,-14.497,-42.6322:9:23:39:.:.:1:.:.:.:-0.0142204
chr15	88576407	.	T	TTATATA	280.332	REJECT	NS=2;DP=59;DPB=100.978;AC=2;AN=2;AF=0.0;RO=17;AO=3;PRO=17.3167;PAO=17.65;QR=640;QA=88;PQR=633.633;PQA=638.967;SRF=1;SRR=16;SAF=0;SAR=3;SRP=31.7504;SAP=9.52472;AB=0.0508475;ABP=106.394;RUN=1;RPP=3.73412;RPPR=4.1599;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.13803;DPRA=0.0;ODDS=2.0219;GTI=0;TYPE=ins;CIGAR=1M6I44M;NUMALT=5;MEANALT=7.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.25076:15:7:262:1:16:-4.1377,-4.86621,-26.3214:1:7:14:.:.:1:.:.:.:-0.00690701	./1:125.379:44:10:378:2:72:-33.3917,-26.6512,-56.6437:2:5:39:.:.:1:.:.:.:-0.0142204
chr15	88576407	.	TTA	T	280.332	REJECT	NS=2;DP=59;DPB=100.978;AC=2;AN=2;AF=0.0;RO=17;AO=2;PRO=17.3167;PAO=16.5667;QR=640;QA=46;PQR=633.633;PQA=605.133;SRF=1;SRR=16;SAF=0;SAR=2;SRP=31.7504;SAP=7.35324;AB=0.133333;ABP=20.5268;RUN=1;RPP=7.35324;RPPR=4.1599;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=3.13803;DPRA=0.0;ODDS=2.0219;GTI=0;TYPE=del;CIGAR=1M2D42M;NUMALT=5;MEANALT=5.0;LEN=2;MQM=65.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.25076:15:7:262:2:46:-4.1377,-2.4319,-23.6159:2:14:14:.:.:1:.:.:.:-0.00690701	./1:125.379:44:10:378:0:0:-33.3917,-39.3565,-107.843:0:0:39:.:.:1:.:.:.:-0.0142204
chr15	88576407	.	TTATA	T	280.332	REJECT	NS=2;DP=59;DPB=100.978;AC=2;AN=2;AF=0.0;RO=17;AO=2;PRO=17.3167;PAO=17.1667;QR=640;QA=47;PQR=633.633;PQA=618.333;SRF=1;SRR=16;SAF=0;SAR=2;SRP=31.7504;SAP=7.35324;AB=0.0454545;ABP=81.9729;RUN=1;RPP=3.0103;RPPR=4.1599;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=3.13803;DPRA=0.0;ODDS=2.0219;GTI=0;TYPE=del;CIGAR=1M4D40M;NUMALT=5;MEANALT=9.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.25076:15:7:262:0:0:-4.1377,-5.23156,-42.4464:0:0:14:.:.:1:.:.:.:-0.00690701	./1:125.379:44:10:378:2:47:-33.3917,-37.0196,-117.58:2:5:39:.:.:1:.:.:.:-0.0142204
chr15	88579653	.	T	TA	1752.48	REJECT	NS=2;DP=328;DPB=401.636;AC=2;AN=2;AF=0.0;RO=181;AO=18;PRO=52.0;PAO=38.0;QR=6653;QA=565;PQR=1828.0;PQA=1305.0;SRF=65;SRR=116;SAF=7;SAR=11;SRP=34.2147;SAP=4.9405;AB=0.054878;ABP=567.487;RUN=1;RPP=3.49285;RPPR=21.2579;RPL=10.0;RPR=8.0;EPP=4.9405;EPPR=16.0751;DPRA=0.0;ODDS=149.438;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:138.939:81:39:1457:6:179:-68.885,-65.3282,-187.304:6:8:74:.:.:1:.:.:.:-0.00690701	./1:138.939:247:142:5196:12:386:-112.703,-123.485,-589.575:12:5:225:.:.:1:.:.:.:-0.0142204
chr15	88579653	.	TA	T	1343.105	REJECT	NS=2;DP=324;DPB=401.636;AC=2;AN=4;AF=0.5;RO=181;AO=80;PRO=52.0;PAO=41.0;QR=6653;QA=2611;PQR=1828.0;PQA=1465.0;SRF=65;SRR=116;SAF=31;SAR=49;SRP=34.2147;SAP=11.8048;AB=0.243902;ABP=189.863;RUN=1;RPP=3.0103;RPPR=21.2579;RPL=40.0;RPR=40.0;EPP=3.11887;EPPR=16.0751;DPRA=0.0;ODDS=149.438;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=60.225;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.068;FS=2.6645;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.204;QD=4.39;RPA=14,13;RU=A;ReadPosRankSum=-0.3755;SOR=0.6195;STR;ClippingRankSum=0.044	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9695:81:39:1457:26:857:-68.885,0.0,-115.672:30:39:77:46,35:618,0,862:1:.:1:.:.:.:-0.00690701	0/1:118.9695:283:142:5196:54:1754:-112.703,0.0,-502.332:68:27:247:187,82:971,0,3451:.:1:1:.:.:.:-0.0142204
chr15	88579653	.	TAA	T	1752.48	REJECT	NS=2;DP=328;DPB=401.636;AC=2;AN=2;AF=0.0;RO=181;AO=20;PRO=52.0;PAO=33.0;QR=6653;QA=668;PQR=1828.0;PQA=1163.0;SRF=65;SRR=116;SAF=8;SAR=12;SRP=34.2147;SAP=4.74748;AB=0.0609756;ABP=552.128;RUN=1;RPP=3.44459;RPPR=21.2579;RPL=11.0;RPR=9.0;EPP=3.44459;EPPR=16.0751;DPRA=0.0;ODDS=149.438;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=3;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.95;PAIREDR=0.994475;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:138.939:81:39:1457:3:106:-68.885,-64.4316,-186.549:3:4:74:.:.:1:.:.:.:-0.00690701	./1:138.939:247:142:5196:17:562:-112.703,-117.591,-711.122:17:8:225:.:.:1:.:.:.:-0.0142204
chr15	88582349	.	AAC	A	1773.88	REJECT	SOMATIC;NS=2;DP=134;DPB=226.125;AC=1;AN=3;AF=0.25;RO=1;AO=31;PRO=53.6667;PAO=54.6667;QR=39;QA=843;PQR=1919.85;PQA=1908.85;SRF=1;SRR=0;SAF=14;SAR=17;SRP=5.18177;SAP=3.64073;AB=0.231343;ABP=87.0171;RUN=1;RPP=3.08035;RPPR=5.18177;RPL=16.0;RPR=15.0;EPP=4.76149;EPPR=5.18177;DPRA=0.0;ODDS=10.6384;GTI=0;TYPE=del;CIGAR=1M2D45M;NUMALT=4;MEANALT=10.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:46.2022:42:1:39:10:281:-55.0056,-33.0477,-36.6893:10:26:38:.:.:.:.:.:.:-0.00690701	./1:160.002:92:0:0:21:562:-131.237,-81.583,-78.3942:21:26:81:.:.:1:.:.:.:-0.0142204
chr15	88582349	.	AACAC	A	1773.88	REJECT	NS=2;DP=134;DPB=226.125;AC=2;AN=2;AF=0.25;RO=1;AO=27;PRO=53.6667;PAO=51.6667;QR=39;QA=780;PQR=1919.85;PQA=1775.85;SRF=1;SRR=0;SAF=8;SAR=19;SRP=5.18177;SAP=12.7417;AB=0.201493;ABP=106.722;RUN=1;RPP=3.09072;RPPR=5.18177;RPL=14.0;RPR=13.0;EPP=3.09072;EPPR=5.18177;DPRA=0.0;ODDS=10.6384;GTI=0;TYPE=del;CIGAR=1M4D43M;NUMALT=4;MEANALT=10.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.275;FS=11.785;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.605;QD=13.41;RPA=23;RU=AC;ReadPosRankSum=-1.453;SOR=0.899;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:46.2022:42:1:39:11:349:-55.0056,-27.1992,-30.5593:11:29:38:.:.:.:.:1:.:.:.:-0.00690701	./1:129.501:135:0:0:16:431:-131.237,-99.307,-121.897:18:22:81:10,20:4016,1383,2147483647:.:1:.:.:.:.:-0.0142204
chr15	88582349	.	AACACAC	A	1773.88	REJECT	NS=2;DP=134;DPB=226.125;AC=2;AN=2;AF=0.5;RO=1;AO=50;PRO=53.6667;PAO=48.0;QR=39;QA=1530;PQR=1919.85;PQA=1709.85;SRF=1;SRR=0;SAF=26;SAR=24;SRP=5.18177;SAP=3.18402;AB=0.373134;ABP=21.7433;RUN=1;RPP=7.35324;RPPR=5.18177;RPL=30.0;RPR=20.0;EPP=4.57376;EPPR=5.18177;DPRA=0.0;ODDS=10.6384;GTI=0;TYPE=del;CIGAR=1M6D41M;NUMALT=4;MEANALT=10.5;LEN=6;MQM=61.6;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.73;FS=5.8925;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.5135;QD=14.255;RPA=23;RU=AC;ReadPosRankSum=-0.2445;SOR=0.584;STR;ClippingRankSum=-0.578	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:72.6011:45:1:39:15:425:-55.0056,-22.1545,-33.7819:25:55:43:14,35:930,0,175:1:.:1:.:.:.:-0.00690701	./1:129.501:135:0:0:35:1105:-131.237,-46.9654,-101.005:43:53:81:10,51:4016,506,1045:.:1:1:.:.:.:-0.0142204
chr15	88582349	.	AACACACAC	A	1773.88	REJECT	NS=2;DP=134;DPB=226.125;AC=0;AN=4;AF=0.0;RO=1;AO=10;PRO=53.6667;PAO=48.0;QR=39;QA=333;PQR=1919.85;PQA=1711.6;SRF=1;SRR=0;SAF=7;SAR=3;SRP=5.18177;SAP=6.48466;AB=0.0746269;ABP=213.611;RUN=1;RPP=3.87889;RPPR=5.18177;RPL=6.0;RPR=4.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=10.6384;GTI=0;TYPE=del;CIGAR=1M8D39M;NUMALT=4;MEANALT=10.5;LEN=8;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:46.2022:42:1:39:1:40:-55.0056,-55.2019,-95.7723:1:3:38:.:.:.:.:.:.:-0.00690701	0/0:160.002:92:0:0:9:293:-131.237,-111.931,-196.799:9:11:81:.:.:.:.:.:.:-0.0142204
chr15	88583867	.	C	T	13273.5	REJECT	NS=2;DP=356;DPB=413.0;AC=4;AN=4;AF=1.0;RO=0;AO=413;PRO=0.0;PAO=0.0;QR=0;QA=15582;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=224;SAR=189;SRP=0.0;SAP=9.45111;AB=0.0;ABP=0.0;RUN=1;RPP=3.43618;RPPR=0.0;RPL=211.0;RPR=202.0;EPP=3.14175;EPPR=0.0;DPRA=0.0;ODDS=75.3636;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997579;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9129;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.375;SOR=0.9165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.2695:113:0:0:114:4276:-384.813,-30.8549,0.0:113:100:113:0,113:4657,338,0:1:.:1:.:.:.:-0.00690701	1/1:127.2695:299:0:0:299:11306:-1016.93,-80.9339,0.0:299:100:299:0,299:12607,879,0:.:1:1:.:.:.:-0.0142204
chr15	88583988	.	T	G	3630.04	PASS	SOMATIC;NS=2;DP=462;DPB=462.0;AC=1;AN=3;AF=0.25;RO=327;AO=133;PRO=0.0;PAO=0.0;QR=12261;QA=5102;PQR=0.0;PQA=0.0;SRF=159;SRR=168;SAF=64;SAR=69;SRP=3.54819;SAP=3.41847;AB=0.397015;ABP=33.8711;RUN=1;RPP=3.41847;RPPR=3.07007;RPL=64.0;RPR=69.0;EPP=5.76954;EPPR=15.2887;DPRA=2.6378;ODDS=80.0952;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987768;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.588;Dels=0.0;FS=0.411;HaplotypeScore=7.8347;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.689;QD=14.04;ReadPosRankSum=0.174;SOR=0.77	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.848:123:127:4696:0:0:0.0,-34.3589,-422.577:0:0:123:119,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:121.924:333:200:7565:133:5102:-368.716,0.0,-590.27:133:40:331:192,126:38.0:0.389:2:4703,0,7357:.:1:1:.:.:1:-0.0142204
chr15	88585055	.	T	TAAA	203.73	PASS	DP=40;AC=1;AN=4;AF=0.5;BaseQRankSum=0.751;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.31;MQRankSum=0.751;QD=5.09;SOR=3.056;ClippingRankSum=-0.751	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:4,8:12:50.0:174,0,50:8:67:12:1:.:.:.:.:.:-0.00690701	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0142204
chr15	88587797	.	C	CA	614.73	PASS	SOMATIC;DP=135;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-3.235;FS=97.662;MLEAC=1;MLEAF=0.5;MQ=53.52;MQRankSum=0.499;QD=4.55;RPA=1,2;RU=A;ReadPosRankSum=1.763;SOR=7.476;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:83,41:131:99.0:652,0,2395:41:33:124:.:1:.:.:.:.:-0.0142204
chr15	88587802	.	G	C	968.652	REJECT	NS=2;DP=178;DPB=184.0;AC=2;AN=4;AF=0.5;RO=66;AO=110;PRO=9.5;PAO=1.5;QR=2412;QA=2730;PQR=189.5;PQA=50.5;SRF=7;SRR=59;SAF=110;SAR=0;SRP=91.9749;SAP=241.872;AB=0.617978;ABP=24.5298;RUN=1;RPP=241.872;RPPR=91.9749;RPL=110.0;RPR=0.0;EPP=241.872;EPPR=113.69;DPRA=0.0;ODDS=49.9552;GTI=0;TYPE=snp;CIGAR=2M1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=45.7091;MQMR=58.9848;PAIRED=0.990909;PAIREDR=0.939394;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-7.212;Dels=0.0;FS=184.996;HaplotypeScore=67.4887;MLEAC=1;MLEAF=0.5;MQ=53.91;MQRankSum=-3.976;QD=9.49;ReadPosRankSum=-0.13;SOR=8.688	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:144.013:50:17:590:33:813:-51.9232,0.0,-42.8405:33:66:50:.:.:.:.:1:.:.:.:-0.00690701	0/1:121.5065:130:49:1822:77:1917:-146.583,0.0,-137.794:76:59:129:56,76:1290,0,1856:.:1:1:.:.:.:-0.0142204
chr15	88587810	.	A	C	12.99	LowQual	SOMATIC;DP=92;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.095;Dels=0.0;FS=30.02;HaplotypeScore=9.603;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.801;QD=0.14;ReadPosRankSum=-2.71;SOR=4.398	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:82,9:92:41.0:41,0,2583:9:10:91:.:1:.:.:.:.:-0.0142204
chr15	88593717	.	CGT	C	433.332	REJECT	NS=2;DP=185;DPB=251.562;AC=2;AN=4;AF=0.5;RO=128;AO=32;PRO=84.0;PAO=79.0;QR=4788;QA=1024;PQR=2984.5;PQA=2803.5;SRF=63;SRR=65;SAF=13;SAR=19;SRP=3.07816;SAP=5.45321;AB=0.172973;ABP=174.862;RUN=1;RPP=12.7819;RPPR=7.35324;RPL=22.0;RPR=10.0;EPP=9.79615;EPPR=3.62103;DPRA=0.0;ODDS=51.4842;GTI=0;TYPE=del;CIGAR=1M2D29M;NUMALT=1;MEANALT=10.5;LEN=2;MQM=60.625;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.232;FS=4.355;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.196;QD=2.35;ReadPosRankSum=0.343;SOR=0.783;ClippingRankSum=-0.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5815:63:42:1561:13:420:-25.5157,0.0,-128.617:13:23:58:48,14:279,0,1311:1:.:1:.:.:.:-0.00690701	0/1:138.163:121:86:3227:19:604:-24.5563,0.0,-276.521:19:18:105:.:.:.:.:1:.:.:.:-0.0142204
chr15	88597055	.	T	C	2050.85	REJECT	NS=2;DP=384;DPB=439.0;AC=2;AN=4;AF=0.5;RO=338;AO=101;PRO=0.0;PAO=0.0;QR=12937;QA=3926;PQR=0.0;PQA=0.0;SRF=185;SRR=153;SAF=49;SAR=52;SRP=9.58896;SAP=3.2038;AB=0.230068;ABP=280.845;RUN=1;RPP=3.54779;RPPR=8.04709;RPL=53.0;RPR=48.0;EPP=7.84774;EPPR=3.24158;DPRA=0.0;ODDS=182.423;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.2585;Dels=0.0;FS=2.176;HaplotypeScore=4.8942;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.002;QD=10.27;ReadPosRankSum=0.21;SOR=0.637;ClippingRankSum=-0.176	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.4175:107:56:2139:53:2041:-154.161,0.0,-162.98:53:49:107:52,53:1848,0,1819:1:.:1:.:.:.:-0.00690701	0/1:122.4175:330:282:10798:48:1885:-80.1898,0.0,-881.817:48:15:330:282,48:1139,0,11047:.:1:1:.:.:.:-0.0142204
chr15	88597299	.	C	T	3580.0	PASS	SOMATIC;NS=2;DP=487;DPB=487.0;AC=1;AN=3;AF=0.25;RO=353;AO=134;PRO=0.0;PAO=0.0;QR=13573;QA=5187;PQR=0.0;PQA=0.0;SRF=190;SRR=163;SAF=78;SAR=56;SRP=7.49473;SAP=10.8535;AB=0.354497;ABP=72.5204;RUN=1;RPP=3.07512;RPPR=15.467;RPL=66.0;RPR=68.0;EPP=3.07512;EPPR=3.01645;DPRA=3.46789;ODDS=69.0096;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985836;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.842;Dels=0.0;FS=1.287;HaplotypeScore=8.864;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.082;QD=12.32;ReadPosRankSum=0.413;SOR=0.796	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:106:109:4221:0:0:0.0,-29.5445,-379.904:0:0:106:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:378:244:9352:134:5187:-364.157,0.0,-738.736:134:35:378:238,127:38.0:0.34:2:4687,0,9293:.:1:1:.:.:1:-0.0142204
chr15	88599431	.	ATATTTT	A	4098.02	REJECT	SOMATIC;NS=2;DP=222;DPB=169.875;AC=1;AN=4;AF=0.0;RO=14;AO=17;PRO=12.9;PAO=2.5;QR=525;QA=625;PQR=415.5;PQA=46.5;SRF=4;SRR=10;SAF=7;SAR=10;SRP=8.59409;SAP=4.1599;AB=0.0765766;ABP=348.724;RUN=1;RPP=4.1599;RPPR=33.4109;RPL=10.0;RPR=7.0;EPP=6.20364;EPPR=8.59409;DPRA=0.0;ODDS=36.5588;GTI=0;TYPE=del;CIGAR=1M6D1M;NUMALT=5;MEANALT=8.0;LEN=6;MQM=60.0;MQMR=57.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=88599437;HOMLEN=1;HOMSEQ=T;SVLEN=-6;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:3:5:56:160.002:57:2:76:3:112:-133.022,-130.258,-205.942:.:.:.:.:.:.:-0.00690701	0/1:15,25:19:36:99:129.732:165:12:449:14:513:-285.748,-259.094,-433.087:.:.:.:1:.:.:-0.0142204
chr15	88599433	.	ATTTT	A	4098.02	REJECT	NS=2;DP=208;DPB=169.875;AC=2;AN=2;AF=0.5;RO=14;AO=109;PRO=12.9;PAO=5.23333;QR=525;QA=4012;PQR=415.5;PQA=151.167;SRF=4;SRR=10;SAF=32;SAR=77;SRP=8.59409;SAP=43.3519;AB=0.490991;ABP=3.1668;RUN=1;RPP=4.62396;RPPR=33.4109;RPL=50.0;RPR=59.0;EPP=8.76769;EPPR=8.59409;DPRA=0.0;ODDS=36.5588;GTI=0;TYPE=del;CIGAR=3M4D1M;NUMALT=5;MEANALT=8.0;LEN=4;MQM=59.9908;MQMR=57.1429;PAIRED=0.990826;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=-0.016;FS=3.198;MLEAC=1;MLEAF=0.75;MQ=59.075;MQRankSum=0.97;QD=18.485;RPA=10,6;RU=T;ReadPosRankSum=1.32;SOR=0.8085;STR;ClippingRankSum=-0.429	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:48:2:76:20:738:-133.022,-73.0602,-80.0038:16:34:48:27,13:312,0,1008:1:.:1:.:.:.:-0.00690701	./1:114.366:167:12:449:89:3274:-285.748,-10.696,-39.45:120:75:159:8,152:8437,402,0:.:1:1:.:.:.:-0.0142204
chr15	88599434	.	T	TA	630.73	PASS	DP=59;AC=1;AN=4;AF=0.5;ALERT;BaseQRankSum=-0.531;FS=5.368;MLEAC=1;MLEAF=0.5;MQ=59.53;MQRankSum=-0.809;QD=10.69;ReadPosRankSum=0.91;SOR=1.904;ClippingRankSum=-2.375	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23,19:42:99.0:668,0,871:19:45:42:1:.:.:.:.:.:-0.00690701	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0142204
chr15	88599435	.	T	A	4098.02	REJECT	NS=2;DP=222;DPB=169.875;AC=0;AN=4;AF=0.0;RO=14;AO=15;PRO=12.9;PAO=5.56667;QR=525;QA=582;PQR=415.5;PQA=165.167;SRF=4;SRR=10;SAF=4;SAR=11;SRP=8.59409;SAP=10.1038;AB=0.0675676;ABP=363.592;RUN=1;RPP=14.7363;RPPR=33.4109;RPL=12.0;RPR=3.0;EPP=6.62942;EPPR=8.59409;DPRA=0.0;ODDS=36.5588;GTI=0;TYPE=snp;CIGAR=4M1X3M;NUMALT=5;MEANALT=8.0;LEN=1;MQM=57.6;MQMR=57.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:57:2:76:6:225:-133.022,-95.5132,-104.617:6:11:56:.:.:.:.:.:.:-0.00690701	0/0:129.732:165:12:449:9:357:-285.748,-261.215,-312.429:9:6:159:.:.:.:.:.:.:-0.0142204
chr15	88599435	.	TTT	A	4098.02	REJECT	NS=2;DP=222;DPB=169.875;AC=0;AN=4;AF=0.0;RO=14;AO=17;PRO=12.9;PAO=5.9;QR=525;QA=642;PQR=415.5;PQA=177.833;SRF=4;SRR=10;SAF=8;SAR=9;SRP=8.59409;SAP=3.13803;AB=0.0765766;ABP=348.724;RUN=1;RPP=4.1599;RPPR=33.4109;RPL=10.0;RPR=7.0;EPP=4.1599;EPPR=8.59409;DPRA=0.0;ODDS=36.5588;GTI=0;TYPE=complex;CIGAR=3M2D1M1X1M;NUMALT=5;MEANALT=8.0;LEN=6;MQM=60.0;MQMR=57.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:57:2:76:3:120:-133.022,-104.133,-114.051:3:5:56:.:.:.:.:.:.:-0.00690701	0/0:129.732:165:12:449:14:522:-285.748,-238.004,-287.051:14:9:159:.:.:.:.:.:.:-0.0142204
chr15	88599435	.	TTT	ATA	4098.02	REJECT	NS=2;DP=222;DPB=169.875;AC=2;AN=2;AF=0.5;RO=14;AO=43;PRO=12.9;PAO=8.9;QR=525;QA=1498;PQR=415.5;PQA=278.833;SRF=4;SRR=10;SAF=13;SAR=30;SRP=8.59409;SAP=17.6046;AB=0.193694;ABP=183.927;RUN=1;RPP=11.5447;RPPR=33.4109;RPL=28.0;RPR=15.0;EPP=3.46479;EPPR=8.59409;DPRA=0.0;ODDS=36.5588;GTI=0;TYPE=complex;CIGAR=4M1X1M1X1M;NUMALT=5;MEANALT=8.0;LEN=8;MQM=52.2093;MQMR=57.1429;PAIRED=0.976744;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:57:2:76:22:808:-133.022,-48.6876,-53.4713:22:39:56:.:.:1:.:.:.:-0.00690701	./1:129.732:165:12:449:21:690:-285.748,-217.643,-264.279:21:13:159:.:.:1:.:.:.:-0.0142204
chr15	88599437	.	T	A	532.77	PASS	DP=59;AC=1;AN=4;AF=0.5;BaseQRankSum=0.693;FS=1.385;MLEAC=1;MLEAF=0.5;MQ=59.53;MQRankSum=0.51;QD=9.03;ReadPosRankSum=0.484;SOR=1.007;ClippingRankSum=0.745	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:22,19:41:99.0:561,0,660:19:46:41:1:.:.:.:.:.:-0.00690701	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0142204
chr15	88600063	.	G	C	6509.64	REJECT	NS=2;DP=255;DPB=300.0;AC=2;AN=4;AF=0.5;RO=79;AO=220;PRO=0.0;PAO=0.0;QR=2977;QA=8318;PQR=0.0;PQA=0.0;SRF=21;SRR=58;SAF=61;SAR=159;SRP=40.64;SAP=97.8049;AB=0.733333;ABP=144.88;RUN=1;RPP=8.69561;RPPR=5.23675;RPL=122.0;RPR=98.0;EPP=3.04978;EPPR=7.6556;DPRA=0.0;ODDS=91.6923;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.974684;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.119;Dels=0.0;FS=0.487;HaplotypeScore=4.8572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.42;QD=24.145;ReadPosRankSum=1.6595;SOR=0.789;ClippingRankSum=-0.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2695:89:50:1877:39:1460:-107.333,0.0,-144.867:39:44:88:49,39:1372,0,1720:1:.:1:.:.:.:-0.00690701	0/1:121.2695:210:29:1100:181:6858:-560.086,0.0,-42.1062:181:86:210:29,181:7068,0,598:.:1:1:.:.:.:-0.0142204
chr15	88600091	.	A	G	5276.5	REJECT	NS=2;DP=204;DPB=245.0;AC=2;AN=4;AF=0.5;RO=66;AO=179;PRO=0.0;PAO=0.0;QR=2581;QA=6891;PQR=0.0;PQA=0.0;SRF=14;SRR=52;SAF=39;SAR=140;SRP=50.5195;SAP=126.76;AB=0.730612;ABP=116.184;RUN=1;RPP=64.1633;RPPR=13.6703;RPL=125.0;RPR=54.0;EPP=10.5923;EPPR=6.30041;DPRA=0.0;ODDS=66.6473;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.954545;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.003;Dels=0.0;FS=0.522;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1455;QD=25.25;ReadPosRankSum=0.3115;SOR=0.6345;ClippingRankSum=0.83	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:44:1731:37:1406:-104.63,0.0,-133.887:37:46:80:42,37:1332,0,1578:1:.:1:.:.:.:-0.00690701	0/1:129.501:164:22:850:142:5485:-449.053,0.0,-32.0481:142:87:164:22,142:5670,0,464:.:1:1:.:.:.:-0.0142204
chr15	88600730	.	A	C	4648.2	REJECT	NS=2;DP=161;DPB=258.714;AC=2;AN=2;AF=0.25;RO=27;AO=9;PRO=35.55;PAO=39.2167;QR=968;QA=291;PQR=1240.9;PQA=1390.23;SRF=17;SRR=10;SAF=7;SAR=2;SRP=6.95112;SAP=9.04217;AB=0.0535714;ABP=293.832;RUN=1;RPP=3.25157;RPPR=12.7417;RPL=4.0;RPR=5.0;EPP=5.18177;EPPR=3.09072;DPRA=0.0;ODDS=41.1549;GTI=0;TYPE=snp;CIGAR=1X27M;NUMALT=4;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.296;Dels=0.0;FS=3.358;HaplotypeScore=123.78;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.128;QD=23.755;ReadPosRankSum=-0.475;SOR=1.264;ClippingRankSum=-1.098	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.1685:43:16:580:1:40:-59.661,-35.0209,-86.9634:12:26:39:23,23:792,0,1164:1:.:1:.:.:.:-0.00690701	./1:115.1685:141:11:388:8:251:-418.694,-287.201,-325.583:70:46:135:23,132:4819,0,545:.:1:1:.:.:.:-0.0142204
chr15	88600730	.	AAAGA	CAAG	4648.2	REJECT	NS=2;DP=168;DPB=258.714;AC=2;AN=4;AF=0.5;RO=27;AO=94;PRO=35.55;PAO=48.2167;QR=968;QA=3274;PQR=1240.9;PQA=1713.23;SRF=17;SRR=10;SAF=70;SAR=24;SRP=6.95112;SAP=51.8915;AB=0.559524;ABP=8.18047;RUN=1;RPP=29.7148;RPPR=12.7417;RPL=30.0;RPR=64.0;EPP=5.32038;EPPR=3.09072;DPRA=0.0;ODDS=41.1549;GTI=0;TYPE=complex;CIGAR=1X3M1D23M;NUMALT=4;MEANALT=13.0;LEN=27;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:131.337:40:16:580:11:402:-59.661,0.0,-59.6753:11:33:33:.:.:1:.:.:.:-0.00690701	0/1:131.337:128:11:388:83:2872:-418.694,0.0,-58.1295:83:72:116:.:.:1:.:.:.:-0.0142204
chr15	88600730	.	AAAGAA	CAAG	4648.2	REJECT	NS=2;DP=168;DPB=258.714;AC=2;AN=2;AF=0.0;RO=27;AO=12;PRO=35.55;PAO=31.4667;QR=968;QA=408;PQR=1240.9;PQA=1104.73;SRF=17;SRR=10;SAF=7;SAR=5;SRP=6.95112;SAP=3.73412;AB=0.0714286;ABP=271.032;RUN=1;RPP=3.73412;RPPR=12.7417;RPL=5.0;RPR=7.0;EPP=5.9056;EPPR=3.09072;DPRA=0.0;ODDS=41.1549;GTI=0;TYPE=complex;CIGAR=1X3M2D22M;NUMALT=4;MEANALT=13.0;LEN=26;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.337:40:16:580:1:39:-59.661,-43.7602,-118.4:1:3:33:.:.:1:.:.:.:-0.00690701	./1:131.337:128:11:388:11:369:-418.694,-307.191,-394.242:11:9:116:.:.:1:.:.:.:-0.0142204
chr15	88600733	.	GA	G	3663.465	REJECT	NS=2;DP=168;DPB=258.714;AC=2;AN=2;AF=0.25;RO=27;AO=7;PRO=35.55;PAO=34.55;QR=968;QA=224;PQR=1240.9;PQA=1197.9;SRF=17;SRR=10;SAF=5;SAR=2;SRP=6.95112;SAP=5.80219;AB=0.0416667;ABP=309.55;RUN=1;RPP=3.32051;RPPR=12.7417;RPL=3.0;RPR=4.0;EPP=5.80219;EPPR=3.09072;DPRA=0.0;ODDS=41.1549;GTI=0;TYPE=del;CIGAR=4M1D23M;NUMALT=4;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.08;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.34;QD=15.435;RPA=12,11;RU=A;ReadPosRankSum=-0.0175;SOR=1.25;STR;ClippingRankSum=1.838	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:115.1685:43:16:580:4:133:-59.661,-54.193,-112.01:15:34:40:20,27:793,0,397:1:.:1:.:.:.:-0.00690701	./1:115.1685:149:11:388:3:91:-418.694,-361.223,-439.92:62:41:135:33,122:2716,0,404:.:1:1:.:.:.:-0.0142204
chr15	88601852	.	G	A	3304.57	PASS	SOMATIC;NS=2;DP=510;DPB=510.0;AC=1;AN=3;AF=0.25;RO=380;AO=129;PRO=0.0;PAO=0.0;QR=14536;QA=4902;PQR=0.0;PQA=0.0;SRF=189;SRR=191;SAF=61;SAR=68;SRP=3.03316;SAP=3.83512;AB=0.335065;ABP=93.9809;RUN=1;RPP=5.8551;RPPR=3.0103;RPL=71.0;RPR=58.0;EPP=7.87507;EPPR=6.87324;DPRA=3.08;ODDS=77.4638;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992248;PAIREDR=0.997368;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.37;Dels=0.0;FS=0.0;HaplotypeScore=4.9202;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.312;QD=11.15;ReadPosRankSum=0.669;SOR=0.677	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:120:124:4716:0:0:0.0,-33.2161,-424.033:0:0:119:115,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:384:256:9820:129:4902:-336.643,0.0,-778.937:128:34:384:246,123:38.0:0.335:2:4311,0,9804:.:1:1:.:.:1:-0.0142204
chr15	88602280	.	AAC	A	2595.07	REJECT	NS=2;DP=193;DPB=256.121;AC=2;AN=3;AF=0.5;RO=42;AO=103;PRO=44.9167;PAO=41.9167;QR=1504;QA=3385;PQR=1613.5;PQA=1500.5;SRF=21;SRR=21;SAF=51;SAR=52;SRP=3.0103;SAP=3.03138;AB=0.530928;ABP=4.62211;RUN=1;RPP=9.10307;RPPR=10.4553;RPL=60.0;RPR=43.0;EPP=10.621;EPPR=3.21711;DPRA=0.0;ODDS=4.47553;GTI=0;TYPE=del;CIGAR=1M2D30M;NUMALT=3;MEANALT=10.5;LEN=2;MQM=60.3883;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.2625;FS=3.682;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-0.266;QD=13.82;RPA=15;RU=AC;ReadPosRankSum=1.768;SOR=0.6825;STR;ClippingRankSum=0.704	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:114.6985:60:25:907:26:856:-62.9821,0.0,-70.9446:29:50:58:25,32:696,0,633:1:.:1:.:.:.:-0.00690701	./1:59.24305:161:17:597:77:2529:-205.496,-3.93665,-38.616:79:62:127:21,82:3873,343,735:.:1:1:.:.:.:-0.0142204
chr15	88602280	.	AACAC	A	2595.07	REJECT	NS=2;DP=194;DPB=256.121;AC=2;AN=2;AF=0.25;RO=42;AO=23;PRO=44.9167;PAO=38.4167;QR=1504;QA=812;PQR=1613.5;PQA=1356.5;SRF=21;SRR=21;SAF=17;SAR=6;SRP=3.0103;SAP=14.4341;AB=0.118557;ABP=248.185;RUN=1;RPP=3.10471;RPPR=10.4553;RPL=12.0;RPR=11.0;EPP=5.3706;EPPR=3.21711;DPRA=0.0;ODDS=4.47553;GTI=0;TYPE=del;CIGAR=1M4D28M;NUMALT=3;MEANALT=10.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.534;FS=6.317;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.862;QD=19.98;RPA=15;RU=AC;ReadPosRankSum=1.621;SOR=0.591;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.397:63:25:907:3:106:-62.9821,-63.4698,-165.094:3:5:59:.:.:.:.:1:.:.:.:-0.00690701	./1:59.24305:161:17:597:20:706:-205.496,-151.293,-244.476:26:20:127:21,33:3873,2223,3405:.:1:1:.:.:.:-0.0142204
chr15	88602280	.	AACACAC	A	2595.07	REJECT	NS=2;DP=194;DPB=256.121;AC=1;AN=3;AF=0.0;RO=42;AO=10;PRO=44.9167;PAO=33.75;QR=1504;QA=295;PQR=1613.5;PQA=1199.5;SRF=21;SRR=21;SAF=5;SAR=5;SRP=3.0103;SAP=3.0103;AB=0.0515464;ABP=341.894;RUN=1;RPP=6.48466;RPPR=10.4553;RPL=3.0;RPR=7.0;EPP=3.87889;EPPR=3.21711;DPRA=0.0;ODDS=4.47553;GTI=0;TYPE=del;CIGAR=1M6D26M;NUMALT=3;MEANALT=10.5;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:130.397:63:25:907:5:139:-62.9821,-61.8497,-172.393:5:8:59:.:.:1:.:.:.:-0.00690701	0/0:19.4861:131:17:597:5:156:-205.496,-207.441,-366.215:5:4:119:.:.:.:.:.:.:-0.0142204
chr15	88602841	.	T	C	10185.3	REJECT	NS=2;DP=374;DPB=427.0;AC=2;AN=4;AF=0.5;RO=93;AO=333;PRO=0.0;PAO=0.0;QR=3450;QA=12680;PQR=0.0;PQA=0.0;SRF=50;SRR=43;SAF=171;SAR=162;SRP=4.15441;SAP=3.5385;AB=0.779859;ABP=293.494;RUN=1;RPP=3.5385;RPPR=3.03365;RPL=171.0;RPR=162.0;EPP=5.88603;EPPR=4.15441;DPRA=0.0;ODDS=162.781;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0095;Dels=0.0;FS=0.0;HaplotypeScore=2.9046;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.165;QD=26.495;ReadPosRankSum=-0.254;SOR=0.6815;ClippingRankSum=0.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.6475:105:46:1688:59:2255:-174.55,0.0,-123.491:58:56:104:46,58:2084,0,1521:1:.:1:.:.:.:-0.00690701	0/1:121.6475:321:47:1762:274:10425:-850.754,0.0,-71.601:274:85:321:47,274:10752,0,1001:.:1:1:.:.:.:-0.0142204
chr15	88602867	.	T	G	10735.1	REJECT	NS=2;DP=395;DPB=447.0;AC=2;AN=4;AF=0.5;RO=93;AO=354;PRO=0.0;PAO=0.0;QR=3575;QA=13373;PQR=0.0;PQA=0.0;SRF=43;SRR=50;SAF=163;SAR=191;SRP=4.15441;SAP=7.81944;AB=0.791946;ABP=333.934;RUN=1;RPP=14.8859;RPPR=3.59403;RPL=155.0;RPR=199.0;EPP=5.97921;EPPR=3.22044;DPRA=0.0;ODDS=164.805;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.078;Dels=0.0;FS=0.0;HaplotypeScore=9.7347;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8405;QD=26.065;ReadPosRankSum=-1.29;SOR=0.7185;ClippingRankSum=-0.072	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:45:1740:57:2057:-157.523,0.0,-129.012:56:55:101:45,56:1884,0,1534:1:.:1:.:.:.:-0.00690701	0/1:129.501:344:48:1835:297:11316:-924.374,0.0,-71.9994:297:86:344:47,297:11643,0,979:.:1:1:.:.:.:-0.0142204
chr15	88603103	.	C	T	10170.8	REJECT	NS=2;DP=370;DPB=420.0;AC=2;AN=4;AF=0.5;RO=87;AO=333;PRO=0.0;PAO=0.0;QR=3362;QA=12654;PQR=0.0;PQA=0.0;SRF=49;SRR=38;SAF=171;SAR=162;SRP=6.03039;SAP=3.5385;AB=0.792857;ABP=315.888;RUN=1;RPP=7.76406;RPPR=3.23494;RPL=180.0;RPR=153.0;EPP=8.49441;EPPR=6.03039;DPRA=0.0;ODDS=130.694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996997;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.488;Dels=0.0;FS=8.896;HaplotypeScore=4.871;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2055;QD=25.845;ReadPosRankSum=0.5335;SOR=0.3525;ClippingRankSum=-1.477	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.746:99:46:1774:54:2034:-155.985,0.0,-132.587:53:54:99:46,53:1787,0,1693:1:.:1:.:.:.:-0.00690701	0/1:120.746:320:41:1588:279:10620:-868.546,0.0,-56.1988:279:87:320:41,279:10883,0,838:.:1:1:.:.:.:-0.0142204
chr15	88603614	.	CA	C	177.027	REJECT	NS=2;DP=42;DPB=104.6;AC=2;AN=3;AF=0.25;RO=5;AO=14;PRO=44.5833;PAO=39.0833;QR=169;QA=352;PQR=1485.58;PQA=1269.58;SRF=3;SRR=2;SAF=9;SAR=5;SRP=3.44459;SAP=5.49198;AB=0.451613;ABP=3.64073;RUN=1;RPP=18.5208;RPPR=13.8677;RPL=2.0;RPR=12.0;EPP=5.49198;EPPR=3.44459;DPRA=2.81818;ODDS=5.35909;GTI=0;TYPE=del;CIGAR=1M1D28M;NUMALT=3;MEANALT=12.0;LEN=1;MQM=58.5714;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=55.44;MQRankSum=-0.256;QD=2.12;RPA=20,19;RU=A;ReadPosRankSum=-1.077;SOR=0.165;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.8114:11:2:72:0:0:0.0,-1.90146,-22.6427:0:0:3:.:.:.:.:1:.:.:.:-0.00690701	0/1:129.501:52:3:97:14:352:-23.6562,0.0,-47.6116:16:61:27:13,19:196,0,132:.:1:1:.:.:.:-0.0142204
chr15	88603614	.	CAA	C	177.027	REJECT	NS=2;DP=42;DPB=104.6;AC=2;AN=2;AF=0.0;RO=5;AO=3;PRO=44.5833;PAO=32.75;QR=169;QA=104;PQR=1485.58;PQA=1084.42;SRF=3;SRR=2;SAF=3;SAR=0;SRP=3.44459;SAP=9.52472;AB=0.0967742;ABP=46.79;RUN=1;RPP=9.52472;RPPR=13.8677;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=3.44459;DPRA=2.81818;ODDS=5.35909;GTI=0;TYPE=del;CIGAR=1M2D27M;NUMALT=3;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.8114:11:2:72:0:0:0.0,-3.08677,-62.0701:0:0:3:.:.:1:.:.:.:-0.00690701	./1:160.002:31:3:97:3:104:-23.6562,-30.0065,-179.187:3:14:22:.:.:1:.:.:.:-0.0142204
chr15	88603636	.	T	G	177.027	REJECT	NS=2;DP=42;DPB=104.6;AC=2;AN=2;AF=0.0;RO=5;AO=3;PRO=44.5833;PAO=24.5833;QR=169;QA=32;PQR=1485.58;PQA=796.417;SRF=3;SRR=2;SAF=3;SAR=0;SRP=3.44459;SAP=9.52472;AB=0.0645161;ABP=54.0749;RUN=1;RPP=3.73412;RPPR=13.8677;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.44459;DPRA=0.0;ODDS=5.35909;GTI=0;TYPE=snp;CIGAR=22M1X7M;NUMALT=3;MEANALT=10.5;LEN=1;MQM=53.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:21.8114:11:2:72:1:15:0.0,-10.3246,-131.288:1:33:3:.:.:1:.:.:.:-0.00690701	./1:160.002:31:3:97:2:17:-23.6562,-55.7169,-400.092:2:9:22:.:.:1:.:.:.:-0.0142204
chr15	88603957	.	G	A	9047.5	REJECT	NS=2;DP=350;DPB=407.0;AC=2;AN=4;AF=0.5;RO=98;AO=309;PRO=0.0;PAO=0.0;QR=3635;QA=11363;PQR=0.0;PQA=0.0;SRF=45;SRR=53;SAF=165;SAR=144;SRP=4.4284;SAP=6.10939;AB=0.759214;ABP=240.544;RUN=1;RPP=3.86062;RPPR=10.1895;RPL=149.0;RPR=160.0;EPP=12.6308;EPPR=3.36483;DPRA=0.0;ODDS=161.113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.533;Dels=0.0;FS=10.6;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.645;QD=24.985;ReadPosRankSum=0.4985;SOR=0.9225;ClippingRankSum=-0.128	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.6775:109:52:1961:60:2233:-170.651,0.0,-146.172:58:53:109:50,57:2036,0,1736:1:.:1:.:.:.:-0.00690701	0/1:119.6775:294:46:1674:249:9130:-741.785,0.0,-70.8382:248:84:294:46,248:9203,0,999:.:1:1:.:.:.:-0.0142204
chr15	88605045	.	C	G	7790.68	REJECT	NS=2;DP=286;DPB=332.0;AC=2;AN=4;AF=0.5;RO=76;AO=255;PRO=0.0;PAO=0.0;QR=2879;QA=9735;PQR=0.0;PQA=0.0;SRF=38;SRR=38;SAF=141;SAR=114;SRP=3.0103;SAP=9.21816;AB=0.768072;ABP=210.242;RUN=1;RPP=3.01882;RPPR=5.8675;RPL=127.0;RPR=128.0;EPP=6.08442;EPPR=3.12459;DPRA=0.0;ODDS=99.9081;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988235;PAIREDR=0.986842;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4275;Dels=0.0;FS=2.6605;HaplotypeScore=7.8563;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.553;QD=24.86;ReadPosRankSum=0.8425;SOR=0.859;ClippingRankSum=0.922	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:45:1669:46:1726:-130.741,0.0,-125.605:44:49:89:45,42:1409,0,1533:1:.:1:.:.:.:-0.00690701	0/1:129.501:241:31:1210:209:8009:-655.46,0.0,-43.8241:209:87:240:31,209:8274,0,638:.:1:1:.:.:.:-0.0142204
chr15	88608074	.	G	A	10949.9	REJECT	NS=2;DP=402;DPB=463.0;AC=2;AN=4;AF=0.5;RO=99;AO=364;PRO=0.0;PAO=0.0;QR=3772;QA=13639;PQR=0.0;PQA=0.0;SRF=45;SRR=54;SAF=179;SAR=185;SRP=4.78696;SAP=3.22506;AB=0.786177;ABP=332.366;RUN=1;RPP=3.3921;RPPR=3.20771;RPL=178.0;RPR=186.0;EPP=3.22506;EPPR=3.55865;DPRA=0.0;ODDS=102.078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997253;PAIREDR=0.989899;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1275;Dels=0.0;FS=1.999;HaplotypeScore=7.8148;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.204;QD=25.775;ReadPosRankSum=-0.102;SOR=0.529;ClippingRankSum=1.07	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3855:119:59:2245:62:2286:-172.957,0.0,-169.274:62:52:119:56,62:2098,0,1969:1:.:1:.:.:.:-0.00690701	0/1:117.3855:342:40:1527:302:11353:-928.549,0.0,-44.7793:302:88:342:40,302:11661,0,709:.:1:1:.:.:.:-0.0142204
chr15	88608148	.	T	G	11222.0	REJECT	NS=2;DP=413;DPB=475.0;AC=2;AN=4;AF=0.5;RO=108;AO=367;PRO=0.0;PAO=0.0;QR=4115;QA=13979;PQR=0.0;PQA=0.0;SRF=57;SRR=51;SAF=188;SAR=179;SRP=3.73412;SAP=3.48956;AB=0.772632;ABP=309.672;RUN=1;RPP=3.01622;RPPR=3.332;RPL=183.0;RPR=184.0;EPP=4.01024;EPPR=5.02092;DPRA=0.0;ODDS=150.611;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99455;PAIREDR=0.981481;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5455;Dels=0.0;FS=2.9975;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2345;QD=25.83;ReadPosRankSum=-0.2955;SOR=0.6905;ClippingRankSum=1.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:61:2324:63:2376:-180.244,0.0,-175.556:62:51:122:59,62:2206,0,2128:1:.:1:.:.:.:-0.00690701	0/1:129.501:351:47:1791:304:11603:-948.551,0.0,-66.0481:304:87:351:47,304:11897,0,941:.:1:1:.:.:.:-0.0142204
chr15	88610457	.	C	T	9283.93	REJECT	NS=2;DP=352;DPB=411.0;AC=2;AN=4;AF=0.5;RO=103;AO=307;PRO=0.0;PAO=0.0;QR=3954;QA=11632;PQR=0.0;PQA=0.0;SRF=50;SRR=53;SAF=146;SAR=161;SRP=3.20004;SAP=4.60177;AB=0.746959;ABP=220.733;RUN=1;RPP=3.86616;RPPR=3.03138;RPL=159.0;RPR=148.0;EPP=6.75202;EPPR=3.03138;DPRA=0.0;ODDS=92.8888;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8935;Dels=0.0;FS=3.0795;HaplotypeScore=8.884;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1935;QD=23.96;ReadPosRankSum=-0.087;SOR=0.488;ClippingRankSum=0.738	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7325:117:68:2620:50:1881:-137.317,0.0,-203.814:49:42:117:67,49:1623,0,2515:1:.:1:.:.:.:-0.00690701	0/1:118.7325:293:35:1334:257:9751:-798.021,0.0,-40.9329:257:88:292:35,257:10039,0,634:.:1:1:.:.:.:-0.0142204
chr15	88610905	.	T	G	9673.67	REJECT	NS=2;DP=357;DPB=413.0;AC=2;AN=4;AF=0.5;RO=96;AO=317;PRO=0.0;PAO=0.0;QR=3680;QA=12072;PQR=0.0;PQA=0.0;SRF=41;SRR=55;SAF=161;SAR=156;SRP=7.44372;SAP=3.18155;AB=0.767554;ABP=259.807;RUN=1;RPP=5.48318;RPPR=5.27225;RPL=168.0;RPR=149.0;EPP=3.83916;EPPR=6.26751;DPRA=0.0;ODDS=147.236;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.019;Dels=0.0;FS=6.897;HaplotypeScore=7.7788;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.862;QD=25.58;ReadPosRankSum=-0.9855;SOR=0.6045;ClippingRankSum=1.519	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.397:110:53:2042:58:2219:-169.627,0.0,-153.711:57:52:110:53,57:1960,0,1913:1:.:1:.:.:.:-0.00690701	0/1:117.397:302:43:1638:259:9853:-804.434,0.0,-65.6009:259:86:302:43,259:10176,0,946:.:1:1:.:.:.:-0.0142204
chr15	88611101	.	T	C	9564.43	REJECT	NS=2;DP=370;DPB=420.0;AC=2;AN=4;AF=0.5;RO=107;AO=313;PRO=0.0;PAO=0.0;QR=3993;QA=11972;PQR=0.0;PQA=0.0;SRF=55;SRR=52;SAF=168;SAR=145;SRP=3.19295;SAP=6.6803;AB=0.745238;ABP=222.412;RUN=1;RPP=3.18374;RPPR=4.00471;RPL=154.0;RPR=159.0;EPP=3.18374;EPPR=3.03059;DPRA=0.0;ODDS=191.927;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99361;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.467;Dels=0.0;FS=2.534;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.02;QD=24.51;ReadPosRankSum=0.8295;SOR=0.598;ClippingRankSum=0.101	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.4765:96:56:2090:42:1571:-114.873,0.0,-161.599:41:43:96:54,41:1572,0,3645:1:.:1:.:.:.:-0.00690701	0/1:121.4765:321:51:1903:271:10401:-848.31,0.0,-83.9806:270:84:321:51,270:10602,0,1160:.:1:1:.:.:.:-0.0142204
chr15	88611122	.	T	C	10238.9	REJECT	NS=2;DP=376;DPB=426.0;AC=2;AN=4;AF=0.5;RO=95;AO=331;PRO=0.0;PAO=0.0;QR=3577;QA=12738;PQR=0.0;PQA=0.0;SRF=48;SRR=47;SAF=168;SAR=163;SRP=3.03316;SAP=3.17431;AB=0.776995;ABP=286.912;RUN=1;RPP=4.119;RPPR=4.13032;RPL=172.0;RPR=159.0;EPP=3.54169;EPPR=3.03316;DPRA=0.0;ODDS=154.104;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993958;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.345;Dels=0.0;FS=0.0;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4495;QD=26.22;ReadPosRankSum=-0.533;SOR=0.6695;ClippingRankSum=-0.181	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:49:1837:49:1889:-143.483,0.0,-138.801:48:50:96:47,47:1775,0,3378:1:.:1:.:.:.:-0.00690701	0/1:129.501:327:46:1740:282:10849:-886.965,0.0,-67.674:281:86:327:46,281:11161,0,963:.:1:1:.:.:.:-0.0142204
chr15	88611208	.	T	C	11367.2	REJECT	NS=2;DP=404;DPB=454.0;AC=2;AN=4;AF=0.5;RO=85;AO=369;PRO=0.0;PAO=0.0;QR=3171;QA=14077;PQR=0.0;PQA=0.0;SRF=40;SRR=45;SAF=190;SAR=179;SRP=3.64897;SAP=3.72235;AB=0.812775;ABP=388.786;RUN=1;RPP=3.29865;RPPR=10.3933;RPL=188.0;RPR=181.0;EPP=3.01618;EPPR=6.10145;DPRA=0.0;ODDS=84.3777;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99729;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.2055;Dels=0.0;FS=1.052;HaplotypeScore=9.7093;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.805;QD=26.925;ReadPosRankSum=0.747;SOR=0.733;ClippingRankSum=0.864	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.593:97:45:1680:54:2060:-158.6,0.0,-124.409:53:54:97:44,52:1896,0,1472:1:.:1:.:.:.:-0.00690701	0/1:117.593:355:40:1491:315:12017:-984.668,0.0,-38.0401:315:89:355:40,315:12307,0,623:.:1:1:.:.:.:-0.0142204
chr15	88611937	.	G	A	8863.92	REJECT	NS=2;DP=335;DPB=387.0;AC=2;AN=4;AF=0.5;RO=85;AO=301;PRO=0.0;PAO=0.0;QR=3230;QA=11110;PQR=0.0;PQA=0.0;SRF=42;SRR=43;SAF=167;SAR=134;SRP=3.03585;SAP=10.8666;AB=0.777778;ABP=262.381;RUN=1;RPP=4.2295;RPPR=6.10145;RPL=144.0;RPR=157.0;EPP=16.3493;EPPR=6.10145;DPRA=0.0;ODDS=116.552;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9934;MQMR=60.0;PAIRED=0.996678;PAIREDR=0.988235;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0895;Dels=0.0;FS=3.657;HaplotypeScore=9.7246;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.404;QD=25.53;ReadPosRankSum=-1.058;SOR=0.733;ClippingRankSum=-1.745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.096:102:47:1807:56:2019:-153.821,0.0,-135.154:55:54:102:47,55:1909,0,1648:1:.:1:.:.:.:-0.00690701	0/1:119.096:284:38:1423:245:9091:-741.125,0.0,-51.8474:245:87:283:38,245:9293,0,749:.:1:1:.:.:.:-0.0142204
chr15	88612019	.	A	G	9770.84	REJECT	NS=2;DP=333;DPB=386.0;AC=2;AN=4;AF=0.5;RO=68;AO=316;PRO=0.0;PAO=0.0;QR=2500;QA=12089;PQR=0.0;PQA=0.0;SRF=36;SRR=32;SAF=160;SAR=156;SRP=3.52123;SAP=3.12025;AB=0.818653;ABP=343.448;RUN=1;RPP=3.0103;RPPR=3.13803;RPL=158.0;RPR=158.0;EPP=3.99983;EPPR=3.13803;DPRA=0.0;ODDS=34.4917;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8725;Dels=0.0;FS=1.185;HaplotypeScore=6.8788;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2125;QD=23.51;ReadPosRankSum=-0.2555;SOR=0.641;ClippingRankSum=0.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.724:104:41:1483:63:2396:-187.51,0.0,-105.323:62:60:103:41,62:2221,0,1326:1:.:1:.:.:.:-0.00690701	0/1:115.2075:280:27:1017:253:9693:-796.029,0.0,-15.6677:252:90:279:27,252:9995,0,315:.:1:1:.:.:.:-0.0142204
chr15	88612340	.	C	T	10303.5	REJECT	NS=2;DP=376;DPB=425.0;AC=2;AN=4;AF=0.5;RO=93;AO=330;PRO=0.0;PAO=0.0;QR=3486;QA=12804;PQR=0.0;PQA=0.0;SRF=34;SRR=59;SAF=171;SAR=159;SRP=17.6035;SAP=3.95785;AB=0.776471;ABP=285.174;RUN=1;RPP=3.66832;RPPR=6.95631;RPL=160.0;RPR=170.0;EPP=5.64239;EPPR=3.03365;DPRA=0.0;ODDS=128.083;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993939;PAIREDR=0.967742;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.026;Dels=0.0;FS=10.3705;HaplotypeScore=3.9635;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2205;QD=25.245;ReadPosRankSum=1.2705;SOR=0.525;ClippingRankSum=-0.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:50:1872:44:1681:-125.848,0.0,-143.059:44:47:92:47,44:1529,0,1657:1:.:1:.:.:.:-0.00690701	0/1:129.501:328:43:1614:286:11123:-911.303,0.0,-56.0622:285:87:328:43,285:11408,0,806:.:1:1:.:.:.:-0.0142204
chr15	88612515	.	G	A	1549.865	REJECT	NS=2;DP=401;DPB=454.0;AC=2;AN=4;AF=0.5;RO=370;AO=83;PRO=0.0;PAO=0.0;QR=14089;QA=3199;PQR=0.0;PQA=0.0;SRF=191;SRR=179;SAF=47;SAR=36;SRP=3.85541;SAP=6.17594;AB=0.182819;ABP=399.73;RUN=1;RPP=3.03646;RPPR=4.51272;RPL=42.0;RPR=41.0;EPP=3.03646;EPPR=6.97764;DPRA=0.0;ODDS=85.1693;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997297;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.61;Dels=0.0;FS=3.1785;HaplotypeScore=4.8965;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9755;QD=8.535;ReadPosRankSum=0.819;SOR=0.9295;ClippingRankSum=-0.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:58:2150:45:1722:-127.116,0.0,-165.61:44:44:100:54,43:1534,0,1851:1:.:1:.:.:.:-0.00690701	0/1:129.501:349:312:11939:38:1477:-38.0769,0.0,-979.003:38:11:349:311,38:626,0,12227:.:1:1:.:.:.:-0.0142204
chr15	88614533	.	T	C	7560.42	REJECT	NS=2;DP=276;DPB=319.0;AC=2;AN=4;AF=0.5;RO=70;AO=249;PRO=0.0;PAO=0.0;QR=2680;QA=9435;PQR=0.0;PQA=0.0;SRF=34;SRR=36;SAF=132;SAR=117;SRP=3.13438;SAP=4.97247;AB=0.780564;ABP=221.117;RUN=1;RPP=3.01902;RPPR=4.99565;RPL=125.0;RPR=124.0;EPP=3.43762;EPPR=3.0103;DPRA=0.0;ODDS=121.605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985714;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.617;Dels=0.0;FS=1.4905;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.43;QD=26.685;ReadPosRankSum=0.477;SOR=0.7265;ClippingRankSum=-0.619	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:36:1382:50:1898:-147.561,0.0,-101.115:48:57:84:35,47:1698,0,1215:1:.:1:.:.:.:-0.00690701	0/1:129.501:233:34:1298:199:7537:-614.91,0.0,-53.6874:199:85:233:34,199:7720,0,756:.:1:1:.:.:.:-0.0142204
chr15	88615235	.	C	T	204.809	REJECT	NS=2;DP=63;DPB=104.414;AC=2;AN=2;AF=0.0;RO=16;AO=6;PRO=25.6;PAO=3.6;QR=564;QA=74;PQR=909.167;PQA=132.0;SRF=5;SRR=11;SAF=0;SAR=6;SRP=7.89611;SAP=16.0391;AB=0.0952381;ABP=92.6611;RUN=1;RPP=8.80089;RPPR=3.55317;RPL=1.0;RPR=5.0;EPP=8.80089;EPPR=3.0103;DPRA=0.0;ODDS=9.12803;GTI=0;TYPE=snp;CIGAR=1M1X27M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:39.6185:15:3:107:2:28:-7.47361,-23.414,-217.133:2:20:10:.:.:1:.:.:.:-0.00690701	./1:69.6491:48:13:457:4:46:-19.7851,-60.1035,-526.875:4:10:39:.:.:1:.:.:.:-0.0142204
chr15	88615235	.	C	CT	204.809	REJECT	NS=2;DP=63;DPB=104.414;AC=2;AN=3;AF=0.25;RO=16;AO=13;PRO=25.6;PAO=21.6;QR=564;QA=285;PQR=909.167;PQA=749.167;SRF=5;SRR=11;SAF=2;SAR=11;SRP=7.89611;SAP=16.5402;AB=0.270833;ABP=24.906;RUN=1;RPP=3.17734;RPPR=3.55317;RPL=7.0;RPR=6.0;EPP=7.18621;EPPR=3.0103;DPRA=0.0;ODDS=9.12803;GTI=0;TYPE=ins;CIGAR=2M1I27M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=57.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.421;FS=1.494;MLEAC=1;MLEAF=0.5;MQ=59.12;MQRankSum=1.346;QD=1.16;RPA=19,20;RU=T;ReadPosRankSum=1.59;SOR=1.022;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:39.6185:15:3:107:0:0:-7.47361,-4.68183,-16.1443:0:0:10:.:.:.:.:1:.:.:.:-0.00690701	0/1:84.32455:71:13:457:13:285:-19.7851,0.0,-50.7793:15:33:47:37,18:147,0,340:.:1:1:.:.:.:-0.0142204
chr15	88615235	.	CT	C	204.809	REJECT	NS=2;DP=63;DPB=104.414;AC=2;AN=3;AF=0.25;RO=16;AO=11;PRO=25.6;PAO=18.1;QR=564;QA=280;PQR=909.167;PQA=645.167;SRF=5;SRR=11;SAF=2;SAR=9;SRP=7.89611;SAP=12.6832;AB=0.174603;ABP=60.9507;RUN=1;RPP=4.78696;RPPR=3.55317;RPL=7.0;RPR=4.0;EPP=4.78696;EPPR=3.0103;DPRA=0.0;ODDS=9.12803;GTI=0;TYPE=del;CIGAR=2M1D26M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:39.6185:15:3:107:5:122:-7.47361,0.0,-23.1048:5:50:10:.:.:1:.:.:.:-0.00690701	./1:69.6491:48:13:457:6:158:-19.7851,-8.2851,-77.896:6:15:39:.:.:1:.:.:.:-0.0142204
chr15	88615235	.	CTT	C	204.809	REJECT	NS=2;DP=63;DPB=104.414;AC=2;AN=2;AF=0.0;RO=16;AO=3;PRO=25.6;PAO=16.1;QR=564;QA=45;PQR=909.167;PQA=575.5;SRF=5;SRR=11;SAF=0;SAR=3;SRP=7.89611;SAP=9.52472;AB=0.0625;ABP=82.8119;RUN=1;RPP=3.73412;RPPR=3.55317;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=3.0103;DPRA=0.0;ODDS=9.12803;GTI=0;TYPE=del;CIGAR=2M2D25M;NUMALT=4;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:39.6185:15:3:107:0:0:-7.47361,-8.39021,-51.2038:0:0:10:.:.:1:.:.:.:-0.00690701	./1:69.6491:48:13:457:3:45:-19.7851,-24.134,-102.947:3:8:39:.:.:1:.:.:.:-0.0142204
chr15	88616092	.	G	A	9237.0	REJECT	NS=2;DP=359;DPB=419.0;AC=2;AN=4;AF=0.5;RO=116;AO=303;PRO=0.0;PAO=0.0;QR=4502;QA=11615;PQR=0.0;PQA=0.0;SRF=53;SRR=63;SAF=135;SAR=168;SRP=4.88226;SAP=10.8147;AB=0.72315;ABP=184.238;RUN=1;RPP=3.0748;RPPR=3.68421;RPL=153.0;RPR=150.0;EPP=8.23473;EPPR=7.80251;DPRA=0.0;ODDS=203.436;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9967;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3585;Dels=0.0;FS=2.1835;HaplotypeScore=5.8794;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2145;QD=23.585;ReadPosRankSum=1.208;SOR=0.707;ClippingRankSum=1.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:67:2604:52:1986:-146.48,0.0,-202.109:51:44:116:63,51:1678,0,2212:1:.:1:.:.:.:-0.00690701	0/1:129.501:300:49:1898:251:9629:-784.846,0.0,-89.4687:251:84:300:49,251:9875,0,1238:.:1:1:.:.:.:-0.0142204
chr15	88617721	.	C	T	8825.85	REJECT	NS=2;DP=322;DPB=373.0;AC=2;AN=4;AF=0.5;RO=83;AO=289;PRO=0.0;PAO=0.0;QR=3131;QA=11028;PQR=0.0;PQA=0.0;SRF=46;SRR=37;SAF=158;SAR=131;SRP=5.12945;SAP=8.48782;AB=0.774799;ABP=247.665;RUN=1;RPP=18.2256;RPPR=3.03646;RPL=167.0;RPR=122.0;EPP=6.98507;EPPR=14.5479;DPRA=0.0;ODDS=119.641;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.9639;PAIRED=0.99654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.842;Dels=0.0;FS=2.975;HaplotypeScore=7.7892;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=1.0405;QD=26.11;ReadPosRankSum=0.411;SOR=0.783;ClippingRankSum=1.676	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.561:99:46:1716:54:2037:-156.271,0.0,-127.385:54:54:99:45,54:1873,0,1504:1:.:1:.:.:.:-0.00690701	0/1:122.561:272:37:1415:235:8991:-735.067,0.0,-53.6286:234:86:271:37,234:9164,0,791:.:1:1:.:.:.:-0.0142204
chr15	88619903	.	TA	T	523.375	REJECT	NS=2;DP=118;DPB=224.692;AC=2;AN=4;AF=0.5;RO=27;AO=36;PRO=106.5;PAO=48.5;QR=994;QA=970;PQR=3755.33;PQA=1659.33;SRF=4;SRR=23;SAF=12;SAR=24;SRP=32.0437;SAP=11.6962;AB=0.305085;ABP=41.9496;RUN=1;RPP=9.04217;RPPR=9.52472;RPL=13.0;RPR=23.0;EPP=5.18177;EPPR=3.09072;DPRA=0.0;ODDS=20.9235;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=3;MEANALT=15.5;LEN=1;MQM=60.1667;MQMR=59.5185;PAIRED=1.0;PAIREDR=0.962963;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.684;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.01;QD=3.18;ReadPosRankSum=-0.212;SOR=0.836;ClippingRankSum=0.048	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:89.86795:25:8:285:9:200:-11.7747,0.0,-62.7119:11:50:22:9,13:174,0,89:1:.:1:.:.:.:-0.00690701	0/1:160.002:89:19:709:27:770:-47.1681,0.0,-184.095:27:42:64:.:.:.:.:1:.:.:.:-0.0142204
chr15	88619903	.	TAA	T	523.375	REJECT	NS=2;DP=118;DPB=224.692;AC=2;AN=2;AF=0.0;RO=27;AO=16;PRO=106.5;PAO=43.5;QR=994;QA=394;PQR=3755.33;PQA=1476.83;SRF=4;SRR=23;SAF=4;SAR=12;SRP=32.0437;SAP=11.6962;AB=0.135593;ABP=139.114;RUN=1;RPP=3.55317;RPPR=9.52472;RPL=7.0;RPR=9.0;EPP=7.89611;EPPR=3.09072;DPRA=0.0;ODDS=20.9235;GTI=0;TYPE=del;CIGAR=1M2D23M;NUMALT=3;MEANALT=15.5;LEN=2;MQM=60.0;MQMR=59.5185;PAIRED=1.0;PAIREDR=0.962963;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.618;FS=21.549;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=0.722;QD=1.97;RPA=19,17;RU=A;ReadPosRankSum=0.029;SOR=1.622;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.7359:29:8:285:5:120:-11.7747,-8.8264,-78.9798:5:23:22:.:.:.:.:1:.:.:.:-0.00690701	./1:129.501:141:19:709:11:274:-47.1681,-42.4873,-286.888:21:23:84:73,31:418,0,1512:.:1:1:.:.:.:-0.0142204
chr15	88619903	.	TAAA	T	523.375	REJECT	NS=2;DP=118;DPB=224.692;AC=2;AN=2;AF=0.0;RO=27;AO=7;PRO=106.5;PAO=38.5;QR=994;QA=133;PQR=3755.33;PQA=1301.5;SRF=4;SRR=23;SAF=1;SAR=6;SRP=32.0437;SAP=10.7656;AB=0.0786517;ABP=140.252;RUN=1;RPP=3.32051;RPPR=9.52472;RPL=4.0;RPR=3.0;EPP=5.80219;EPPR=3.09072;DPRA=0.0;ODDS=20.9235;GTI=0;TYPE=del;CIGAR=1M3D22M;NUMALT=3;MEANALT=22.0;LEN=3;MQM=60.0;MQMR=59.5185;PAIRED=1.0;PAIREDR=0.962963;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.7359:29:8:285:0:0:-11.7747,-21.5362,-129.216:0:0:22:.:.:1:.:.:.:-0.00690701	./1:160.002:89:19:709:7:133:-47.1681,-63.6433,-353.929:7:11:64:.:.:1:.:.:.:-0.0142204
chr15	88623124	.	A	T	12951.2	REJECT	NS=2;DP=466;DPB=534.0;AC=2;AN=4;AF=0.5;RO=107;AO=427;PRO=0.0;PAO=0.0;QR=4068;QA=16099;PQR=0.0;PQA=0.0;SRF=55;SRR=52;SAF=217;SAR=210;SRP=3.19295;SAP=3.25949;AB=0.799625;ABP=419.412;RUN=1;RPP=3.05607;RPPR=7.57648;RPL=215.0;RPR=212.0;EPP=20.7126;EPPR=3.51765;DPRA=0.0;ODDS=53.0665;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997658;PAIREDR=0.981308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5375;Dels=0.0;FS=0.3105;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.612;QD=25.71;ReadPosRankSum=1.029;SOR=0.672;ClippingRankSum=0.214	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:132:68:2600:66:2473:-186.24,0.0,-197.677:66:49:132:65,66:2229,0,2355:1:.:1:.:.:.:-0.00690701	0/1:129.501:399:39:1468:361:13626:-1117.23,0.0,-23.7824:360:90:399:39,360:13942,0,465:.:1:1:.:.:.:-0.0142204
chr15	88624621	.	C	G	9847.4	REJECT	NS=2;DP=348;DPB=405.0;AC=2;AN=4;AF=0.5;RO=83;AO=321;PRO=0.0;PAO=0.0;QR=3213;QA=12239;PQR=0.0;PQA=0.0;SRF=33;SRR=50;SAF=161;SAR=160;SRP=10.5712;SAP=3.01706;AB=0.792593;ABP=304.169;RUN=1;RPP=7.23824;RPPR=3.03646;RPL=148.0;RPR=173.0;EPP=3.55824;EPPR=3.24576;DPRA=0.0;ODDS=108.505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996885;PAIREDR=0.987952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.97;Dels=0.0;FS=5.488;HaplotypeScore=7.8877;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.718;QD=26.79;ReadPosRankSum=0.3575;SOR=0.493;ClippingRankSum=-0.393	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.086:110:47:1811:66:2506:-194.925,0.0,-132.375:64:58:110:45,63:2146,0,1547:1:.:1:.:.:.:-0.00690701	0/1:119.086:292:36:1402:255:9733:-796.648,0.0,-47.3134:255:88:291:36,255:9999,0,713:.:1:1:.:.:.:-0.0142204
chr15	88625508	.	C	A	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=2;AF=0.0;RO=40;AO=10;PRO=40.1524;PAO=13.1524;QR=1435;QA=134;PQR=1313.37;PQA=448.369;SRF=19;SRR=21;SAF=0;SAR=10;SRP=3.22745;SAP=24.725;AB=0.0980392;ABP=146.157;RUN=1;RPP=10.8276;RPPR=45.5712;RPL=2.0;RPR=8.0;EPP=10.8276;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=snp;CIGAR=1X25M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=56.4;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.31831:34:14:501:3:56:-1.42238,-18.6165,-251.563:3:11:27:.:.:1:.:.:.:-0.00690701	./1:93.3524:68:26:934:7:78:-13.7254,-55.6171,-533.71:7:12:57:.:.:1:.:.:.:-0.0142204
chr15	88625508	.	C	CA	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=3;AF=0.25;RO=40;AO=8;PRO=40.1524;PAO=30.1524;QR=1435;QA=227;PQR=1313.37;PQA=1020.37;SRF=19;SRR=21;SAF=2;SAR=6;SRP=3.22745;SAP=7.35324;AB=0.0784314;ABP=160.463;RUN=1;RPP=7.35324;RPPR=45.5712;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=58.75;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.31831:34:14:501:3:82:-1.42238,0.0,-51.7938:3:11:27:.:.:1:.:.:.:-0.00690701	./1:93.3524:68:26:934:5:145:-13.7254,-10.4194,-98.1443:5:9:57:.:.:1:.:.:.:-0.0142204
chr15	88625508	.	CA	C	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=3;AF=0.25;RO=40;AO=13;PRO=40.1524;PAO=19.6524;QR=1435;QA=406;PQR=1313.37;PQA=662.369;SRF=19;SRR=21;SAF=7;SAR=6;SRP=3.22745;SAP=3.17734;AB=0.127451;ABP=125.975;RUN=1;RPP=16.5402;RPPR=45.5712;RPL=2.0;RPR=11.0;EPP=4.51363;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=6;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.416;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=55.6;MQRankSum=1.769;QD=0.89;RPA=18,17;RU=A;ReadPosRankSum=1.172;SOR=0.673;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.31831:34:14:501:2:44:-1.42238,-6.94546,-99.3554:2:7:27:.:.:.:.:1:.:.:.:-0.00690701	0/1:96.1762:90:26:934:11:362:-13.7254,0.0,-180.05:18:25:70:57,26:140,0,763:.:1:1:.:.:.:-0.0142204
chr15	88625508	.	CAA	C	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=2;AF=0.0;RO=40;AO=6;PRO=40.1524;PAO=15.819;QR=1435;QA=163;PQR=1313.37;PQA=540.786;SRF=19;SRR=21;SAF=2;SAR=4;SRP=3.22745;SAP=4.45795;AB=0.0588235;ABP=175.451;RUN=1;RPP=8.80089;RPPR=45.5712;RPL=1.0;RPR=5.0;EPP=3.0103;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=del;CIGAR=1M2D23M;NUMALT=6;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.31831:34:14:501:2:29:-1.42238,-9.92471,-119.949:2:7:27:.:.:1:.:.:.:-0.00690701	./1:93.3524:68:26:934:4:134:-13.7254,-27.2784,-267.955:4:7:57:.:.:1:.:.:.:-0.0142204
chr15	88625508	.	CAAA	C	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=2;AF=0.0;RO=40;AO=5;PRO=40.1524;PAO=16.119;QR=1435;QA=128;PQR=1313.37;PQA=554.286;SRF=19;SRR=21;SAF=2;SAR=3;SRP=3.22745;SAP=3.44459;AB=0.0490196;ABP=183.2;RUN=1;RPP=3.44459;RPPR=45.5712;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=del;CIGAR=1M3D22M;NUMALT=6;MEANALT=12.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=0.8;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.31831:34:14:501:1:35:-1.42238,-11.5539,-146.14:1:4:27:.:.:1:.:.:.:-0.00690701	./1:93.3524:68:26:934:4:93:-13.7254,-29.1683,-278.166:4:7:57:.:.:1:.:.:.:-0.0142204
chr15	88625508	.	CAAAA	C	94.7171	REJECT	NS=2;DP=102;DPB=169.423;AC=2;AN=2;AF=0.0;RO=40;AO=2;PRO=40.1524;PAO=14.9524;QR=1435;QA=53;PQR=1313.37;PQA=513.452;SRF=19;SRR=21;SAF=2;SAR=0;SRP=3.22745;SAP=7.35324;AB=0.0588235;ABP=60.4905;RUN=1;RPP=3.0103;RPPR=45.5712;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=3.22745;DPRA=0.0;ODDS=1.18901;GTI=0;TYPE=del;CIGAR=1M4D21M;NUMALT=6;MEANALT=13.0;LEN=4;MQM=50.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.31831:34:14:501:2:53:-1.42238,-11.8323,-163.451:2:7:27:.:.:1:.:.:.:-0.00690701	./1:93.3524:68:26:934:0:0:-13.7254,-39.3375,-289.664:0:0:57:.:.:1:.:.:.:-0.0142204
chr15	88626015	.	C	T	10899.4	REJECT	NS=2;DP=407;DPB=471.0;AC=2;AN=4;AF=0.5;RO=114;AO=357;PRO=0.0;PAO=0.0;QR=4399;QA=13617;PQR=0.0;PQA=0.0;SRF=52;SRR=62;SAF=165;SAR=192;SRP=4.9151;SAP=7.44448;AB=0.757962;ABP=275.247;RUN=1;RPP=6.22797;RPPR=3.08649;RPL=190.0;RPR=167.0;EPP=4.76816;EPPR=3.08649;DPRA=0.0;ODDS=186.752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985994;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9725;Dels=0.0;FS=0.997;HaplotypeScore=4.9312;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0325;QD=24.955;ReadPosRankSum=-0.7845;SOR=0.6645;ClippingRankSum=0.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.127:125:64:2453:63:2367:-178.62,0.0,-186.348:61:49:125:63,60:2051,0,2281:1:.:1:.:.:.:-0.00690701	0/1:118.127:343:50:1946:294:11250:-918.686,0.0,-81.8684:293:85:343:50,293:11552,0,1161:.:1:1:.:.:.:-0.0142204
chr15	88626522	.	G	C	3152.05	REJECT	NS=2;DP=123;DPB=145.0;AC=2;AN=4;AF=0.5;RO=37;AO=108;PRO=0.0;PAO=0.0;QR=1375;QA=4150;PQR=0.0;PQA=0.0;SRF=6;SRR=31;SAF=16;SAR=92;SRP=39.6906;SAP=119.144;AB=0.744828;ABP=78.5027;RUN=1;RPP=5.9056;RPPR=3.5385;RPL=60.0;RPR=48.0;EPP=8.15749;EPPR=3.06899;DPRA=0.0;ODDS=22.3044;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.963;MQMR=59.7838;PAIRED=0.990741;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.073;Dels=0.0;FS=0.0;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.8115;QD=25.045;ReadPosRankSum=0.38;SOR=0.66;ClippingRankSum=0.859	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.304:42:24:929:19:711:-52.4239,0.0,-72.0523:19:44:42:23,19:675,0,868:1:.:1:.:.:.:-0.00690701	0/1:97.933:102:13:446:89:3439:-281.917,0.0,-12.4953:89:87:102:13,89:3567,0,165:.:1:1:.:.:.:-0.0142204
chr15	88627317	.	C	T	511.257	REJECT	NS=2;DP=173;DPB=249.864;AC=2;AN=2;AF=0.0;RO=88;AO=6;PRO=55.75;PAO=18.5833;QR=3150;QA=76;PQR=1952.67;PQA=620.667;SRF=51;SRR=37;SAF=0;SAR=6;SRP=7.84676;SAP=16.0391;AB=0.0346821;ABP=328.367;RUN=1;RPP=4.45795;RPPR=6.56362;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=7.84676;DPRA=0.0;ODDS=12.5663;GTI=0;TYPE=snp;CIGAR=1X21M;NUMALT=3;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=59.7727;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.5746:44:22:771:2:32:-18.162,-39.4087,-295.065:2:5:37:.:.:1:.:.:.:-0.00690701	./1:143.365:129:66:2379:4:44:-39.3895,-93.7716,-735.0:4:4:100:.:.:1:.:.:.:-0.0142204
chr15	88627317	.	C	CT	511.257	REJECT	NS=2;DP=173;DPB=249.864;AC=2;AN=2;AF=0.0;RO=88;AO=15;PRO=55.75;PAO=47.75;QR=3150;QA=530;PQR=1952.67;PQA=1645.67;SRF=51;SRR=37;SAF=12;SAR=3;SRP=7.84676;SAP=14.7363;AB=0.0867052;ABP=259.683;RUN=1;RPP=4.31318;RPPR=6.56362;RPL=9.0;RPR=6.0;EPP=4.31318;EPPR=7.84676;DPRA=0.0;ODDS=12.5663;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=3;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=59.7727;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.5746:44:22:771:6:225:-18.162,-3.15222,-73.2055:6:16:37:.:.:1:.:.:.:-0.00690701	./1:143.365:129:66:2379:9:305:-39.3895,-25.7115,-248.079:9:9:100:.:.:1:.:.:.:-0.0142204
chr15	88627317	.	CT	C	511.257	REJECT	NS=2;DP=173;DPB=249.864;AC=2;AN=4;AF=0.5;RO=88;AO=28;PRO=55.75;PAO=41.9167;QR=3150;QA=946;PQR=1952.67;PQA=1493.0;SRF=51;SRR=37;SAF=19;SAR=9;SRP=7.84676;SAP=10.7656;AB=0.16185;ABP=174.833;RUN=1;RPP=10.7656;RPPR=6.56362;RPL=19.0;RPR=9.0;EPP=4.25114;EPPR=7.84676;DPRA=0.0;ODDS=12.5663;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=3;MEANALT=16.5;LEN=1;MQM=60.7143;MQMR=59.7727;PAIRED=0.964286;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:54.5746:44:22:771:7:232:-18.162,0.0,-76.0046:7:19:37:.:.:1:.:.:.:-0.00690701	0/1:143.365:129:66:2379:21:714:-39.3895,0.0,-265.16:21:21:100:.:.:1:.:.:.:-0.0142204
chr15	88628979	.	G	C	9811.29	REJECT	NS=2;DP=370;DPB=421.0;AC=2;AN=4;AF=0.5;RO=92;AO=329;PRO=0.0;PAO=0.0;QR=3500;QA=12280;PQR=0.0;PQA=0.0;SRF=47;SRR=45;SAF=182;SAR=147;SRP=3.10471;SAP=11.0956;AB=0.781473;ABP=292.724;RUN=1;RPP=3.33371;RPPR=12.4515;RPL=161.0;RPR=168.0;EPP=25.9857;EPPR=3.10471;DPRA=0.0;ODDS=125.053;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98913;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.327;Dels=0.0;FS=1.116;HaplotypeScore=13.662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4935;QD=24.27;ReadPosRankSum=0.5735;SOR=0.7655;ClippingRankSum=-0.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:50:1918:50:1902:-144.108,0.0,-145.545:49:49:99:50,49:1587,0,1821:1:.:1:.:.:.:-0.00690701	0/1:129.501:320:42:1582:279:10378:-846.536,0.0,-55.4909:279:87:320:41,279:10521,0,818:.:1:1:.:.:.:-0.0142204
chr15	88631907	.	G	A	3325.35	PASS	SOMATIC;NS=2;DP=467;DPB=467.0;AC=1;AN=3;AF=0.25;RO=344;AO=123;PRO=0.0;PAO=0.0;QR=13068;QA=4801;PQR=0.0;PQA=0.0;SRF=189;SRR=155;SAF=71;SAR=52;SRP=10.3075;SAP=9.38348;AB=0.360704;ABP=60.4811;RUN=1;RPP=9.38348;RPPR=15.2311;RPL=52.0;RPR=71.0;EPP=4.44029;EPPR=3.23755;DPRA=2.70635;ODDS=78.6231;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8455;MQMR=59.9419;PAIRED=0.99187;PAIREDR=0.991279;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.081;Dels=0.0;FS=1.879;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.204;QD=12.72;ReadPosRankSum=-0.256;SOR=0.814	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:124:126:4743:0:0:0.0,-33.7196,-426.408:0:0:124:123,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:339:218:8325:123:4801:-339.253,0.0,-656.384:122:36:339:210,119:39.0:0.364:2:4341,0,8194:.:1:1:.:.:1:-0.0142204
chr15	88632886	.	C	G	8878.43	REJECT	NS=2;DP=334;DPB=387.0;AC=2;AN=4;AF=0.5;RO=95;AO=291;PRO=0.0;PAO=0.0;QR=3607;QA=11106;PQR=0.0;PQA=0.0;SRF=53;SRR=42;SAF=148;SAR=143;SRP=5.77607;SAP=3.19685;AB=0.751938;ABP=216.37;RUN=1;RPP=3.07746;RPPR=3.21602;RPL=144.0;RPR=147.0;EPP=6.95775;EPPR=11.2619;DPRA=0.0;ODDS=144.211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993127;PAIREDR=0.978947;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.217;Dels=0.0;FS=13.1795;HaplotypeScore=6.8988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.335;QD=25.135;ReadPosRankSum=-0.133;SOR=0.4105;ClippingRankSum=-1.203	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:54:2053:51:1962:-148.159,0.0,-156.318:51:49:104:53,51:1816,0,1824:1:.:1:.:.:.:-0.00690701	0/1:129.501:282:41:1554:240:9144:-746.396,0.0,-63.6958:240:85:281:41,240:9358,0,901:.:1:1:.:.:.:-0.0142204
chr15	88632927	.	G	C	9035.92	REJECT	NS=2;DP=328;DPB=381.0;AC=2;AN=4;AF=0.5;RO=86;AO=293;PRO=0.0;PAO=0.0;QR=3323;QA=11271;PQR=0.0;PQA=0.0;SRF=45;SRR=41;SAF=129;SAR=164;SRP=3.41429;SAP=12.089;AB=0.769029;ABP=242.528;RUN=1;RPP=3.90705;RPPR=4.62628;RPL=152.0;RPR=141.0;EPP=6.93081;EPPR=3.1113;DPRA=0.0;ODDS=130.112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996587;PAIREDR=0.988372;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4625;Dels=0.0;FS=6.328;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4855;QD=26.195;ReadPosRankSum=0.964;SOR=0.7035;ClippingRankSum=0.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6415:105:48:1861:57:2222:-171.531,0.0,-139.037:57:54:105:48,57:2016,0,1692:1:.:1:.:.:.:-0.00690701	0/1:118.6415:275:38:1462:236:9049:-739.745,0.0,-57.3066:236:86:274:38,236:9280,0,831:.:1:1:.:.:.:-0.0142204
chr15	88635680	.	T	C	9936.37	REJECT	NS=2;DP=365;DPB=414.0;AC=2;AN=4;AF=0.5;RO=89;AO=325;PRO=0.0;PAO=0.0;QR=3419;QA=12375;PQR=0.0;PQA=0.0;SRF=41;SRR=48;SAF=162;SAR=163;SRP=4.20583;SAP=3.01698;AB=0.785024;ABP=295.142;RUN=1;RPP=7.88108;RPPR=5.96253;RPL=176.0;RPR=149.0;EPP=8.6294;EPPR=3.0347;DPRA=0.0;ODDS=139.945;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.809;Dels=0.0;FS=0.687;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1445;QD=25.93;ReadPosRankSum=-0.548;SOR=0.745;ClippingRankSum=-1.733	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8145:96:46:1782:52:1906:-145.007,0.0,-133.894:51:53:96:45,50:1734,0,1599:1:.:1:.:.:.:-0.00690701	0/1:118.8145:316:43:1637:273:10469:-856.042,0.0,-61.6914:273:86:316:43,273:10740,0,888:.:1:1:.:.:.:-0.0142204
chr15	88636264	.	G	GT	232.966	REJECT	NS=2;DP=179;DPB=217.261;AC=2;AN=2;AF=0.0;RO=115;AO=16;PRO=34.1667;PAO=25.1667;QR=4186;QA=479;PQR=1179.67;PQA=864.667;SRF=64;SRR=51;SAF=6;SAR=10;SRP=6.20142;SAP=5.18177;AB=0.0909091;ABP=194.889;RUN=1;RPP=22.5536;RPPR=31.7304;RPL=14.0;RPR=2.0;EPP=11.6962;EPPR=16.7755;DPRA=0.0;ODDS=3.65391;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=2;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.9217;PAIRED=1.0;PAIREDR=0.982609;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:15.958:47:34:1248:4:106:0.0,-1.83848,-114.908:4:10:40:.:.:1:.:.:.:-0.00690701	./1:130.491:132:81:2938:12:373:-28.3254,-15.2894,-275.598:12:11:107:.:.:1:.:.:.:-0.0142204
chr15	88636264	.	GT	G	232.966	REJECT	NS=2;DP=179;DPB=217.261;AC=2;AN=3;AF=0.25;RO=115;AO=16;PRO=34.1667;PAO=28.6667;QR=4186;QA=566;PQR=1179.67;PQA=958.667;SRF=64;SRR=51;SAF=10;SAR=6;SRP=6.20142;SAP=5.18177;AB=0.106061;ABP=180.939;RUN=1;RPP=11.6962;RPPR=31.7304;RPL=12.0;RPR=4.0;EPP=5.18177;EPPR=16.7755;DPRA=0.0;ODDS=3.65391;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=2;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.9217;PAIRED=1.0;PAIREDR=0.982609;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.992;FS=5.587;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-0.812;QD=0.84;RPA=13,12;RU=T;ReadPosRankSum=-0.689;SOR=1.302;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:15.958:47:34:1248:2:79:0.0,-0.943419,-114.387:2:5:40:.:.:.:.:1:.:.:.:-0.00690701	0/1:114.7455:153:81:2938:14:487:-28.3254,0.0,-264.77:20:16:125:117,27:185,0,2152:.:1:1:.:.:.:-0.0142204
chr15	88636305	.	G	T	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=2;AF=0.0;RO=52;AO=23;PRO=35.3167;PAO=25.0167;QR=1801;QA=597;PQR=1161.17;PQA=683.367;SRF=27;SRR=25;SAF=0;SAR=23;SRP=3.17734;SAP=52.9542;AB=0.156463;ABP=153.699;RUN=1;RPP=5.3706;RPPR=31.2394;RPL=9.0;RPR=14.0;EPP=5.3706;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=snp;CIGAR=1X21M;NUMALT=6;MEANALT=17.5;LEN=1;MQM=57.6522;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.809;Dels=0.01;FS=28.991;HaplotypeScore=63.9349;MLEAC=1;MLEAF=0.5;MQ=59.24;MQRankSum=0.979;QD=1.56;ReadPosRankSum=0.57;SOR=1.738	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.461:29:11:365:3:62:-96.3905,-105.927,-338.561:3:13:23:.:.:.:.:1:.:.:.:-0.00690701	./1:119.7305:146:41:1436:20:535:-178.326,-166.167,-673.67:25:20:133:144,31:305,0,3251:.:1:1:.:.:.:-0.0142204
chr15	88636305	.	G	GT	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=2;AF=0.0;RO=52;AO=14;PRO=35.3167;PAO=29.9833;QR=1801;QA=386;PQR=1161.17;PQA=958.5;SRF=27;SRR=25;SAF=7;SAR=7;SRP=3.17734;SAP=3.0103;AB=0.0952381;ABP=212.195;RUN=1;RPP=3.63072;RPPR=31.2394;RPL=6.0;RPR=8.0;EPP=25.3454;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=6;MEANALT=17.5;LEN=1;MQM=59.4286;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.461:29:11:365:1:40:-96.3905,-96.3139,-128.92:1:4:23:.:.:1:.:.:.:-0.00690701	./1:140.461:118:41:1436:13:346:-178.326,-152.016,-280.555:13:14:92:.:.:1:.:.:.:-0.0142204
chr15	88636305	.	GT	G	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=2;AF=0.0;RO=52;AO=9;PRO=35.3167;PAO=26.15;QR=1801;QA=284;PQR=1161.17;PQA=835.333;SRF=27;SRR=25;SAF=6;SAR=3;SRP=3.17734;SAP=5.18177;AB=0.0612245;ABP=248.83;RUN=1;RPP=5.18177;RPPR=31.2394;RPL=3.0;RPR=6.0;EPP=9.04217;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=6;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.461:29:11:365:3:73:-96.3905,-99.3024,-190.319:3:13:23:.:.:1:.:.:.:-0.00690701	./1:140.461:118:41:1436:6:211:-178.326,-177.589,-384.429:6:7:92:.:.:1:.:.:.:-0.0142204
chr15	88636305	.	GTTTTTTTTTTTTTGTTGGG	TTTTTTTTTTTTTTGTTGGT	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=2;AF=0.0;RO=52;AO=2;PRO=35.3167;PAO=7.5;QR=1801;QA=28;PQR=1161.17;PQA=96.3333;SRF=27;SRR=25;SAF=0;SAR=2;SRP=3.17734;SAP=7.35324;AB=0.0689655;ABP=49.8093;RUN=1;RPP=7.35324;RPPR=31.2394;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=complex;CIGAR=1X18M1X2M;NUMALT=6;MEANALT=12.0;LEN=22;MQM=50.0;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.461:29:11:365:2:28:-96.3905,-139.304,-664.656:2:9:23:.:.:1:.:.:.:-0.00690701	./1:140.461:118:41:1436:0:0:-178.326,-261.41,-1322.89:0:0:92:.:.:1:.:.:.:-0.0142204
chr15	88636319	.	G	T	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=2;AF=0.0;RO=52;AO=7;PRO=35.3167;PAO=19.0667;QR=1801;QA=98;PQR=1161.17;PQA=547.667;SRF=27;SRR=25;SAF=7;SAR=0;SRP=3.17734;SAP=18.2106;AB=0.047619;ABP=264.311;RUN=1;RPP=3.32051;RPPR=31.2394;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=snp;CIGAR=14M1X7M;NUMALT=6;MEANALT=17.5;LEN=1;MQM=59.0;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.461:29:11:365:2:28:-96.3905,-111.769,-328.411:2:9:23:.:.:1:.:.:.:-0.00690701	./1:140.461:118:41:1436:5:70:-178.326,-191.832,-745.71:5:5:92:.:.:1:.:.:.:-0.0142204
chr15	88636319	.	GTTGGGGA	TTTGGGGG	2669.97	REJECT	NS=2;DP=147;DPB=221.864;AC=2;AN=4;AF=0.5;RO=52;AO=8;PRO=35.3167;PAO=13.9667;QR=1801;QA=64;PQR=1161.17;PQA=428.633;SRF=27;SRR=25;SAF=8;SAR=0;SRP=3.17734;SAP=20.3821;AB=0.0544218;ABP=256.511;RUN=1;RPP=12.7819;RPPR=31.2394;RPL=7.0;RPR=1.0;EPP=12.7819;EPPR=27.0635;DPRA=0.0;ODDS=69.3362;GTI=0;TYPE=complex;CIGAR=14M1X6M1X;NUMALT=6;MEANALT=17.5;LEN=22;MQM=57.5;MQMR=59.8846;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:140.461:29:11:365:1:14:-96.3905,0.0,-319.643:1:4:23:.:.:1:.:.:.:-0.00690701	0/1:140.461:118:41:1436:7:50:-178.326,0.0,-686.832:7:8:92:.:.:1:.:.:.:-0.0142204
chr15	88637734	.	G	A	520.529	REJECT	NS=2;DP=82;DPB=89.75;AC=2;AN=2;AF=0.0;RO=58;AO=5;PRO=7.5;PAO=6.0;QR=2020;QA=56;PQR=146.0;PQA=142.0;SRF=31;SRR=27;SAF=5;SAR=0;SRP=3.60933;SAP=13.8677;AB=0.0609756;ABP=140.29;RUN=1;RPP=3.44459;RPPR=96.6082;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=3.0103;DPRA=0.0;ODDS=2.5537;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=3;MEANALT=3.5;LEN=1;MQM=33.6;MQMR=58.9138;PAIRED=1.0;PAIREDR=0.913793;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-2.556;Dels=0.0;FS=13.341;HaplotypeScore=18.2776;MLEAC=1;MLEAF=0.5;MQ=52.28;MQRankSum=-3.049;QD=0.7;ReadPosRankSum=-0.652;SOR=4.139	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.4159:30:22:783:3:28:-10.9391,-15.4547,-79.3995:3:10:30:.:.:.:.:1:.:.:.:-0.00690701	./1:82.88055:55:36:1237:2:28:-48.3601,-45.7353,-154.829:6:10:54:48,10:69,0,1262:.:1:1:.:.:.:-0.0142204
chr15	88637734	.	GAAT	AAAA	520.529	REJECT	NS=2;DP=82;DPB=89.75;AC=2;AN=3;AF=0.25;RO=58;AO=8;PRO=7.5;PAO=1.0;QR=2020;QA=173;PQR=146.0;PQA=37.0;SRF=31;SRR=27;SAF=8;SAR=0;SRP=3.60933;SAP=20.3821;AB=0.097561;ABP=118.363;RUN=1;RPP=4.09604;RPPR=96.6082;RPL=5.0;RPR=3.0;EPP=4.09604;EPPR=3.0103;DPRA=0.0;ODDS=2.5537;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=3;MEANALT=3.5;LEN=4;MQM=35.25;MQMR=58.9138;PAIRED=1.0;PAIREDR=0.913793;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.4159:30:22:783:2:39:-10.9391,-2.35847,-77.6842:2:7:30:.:.:1:.:.:.:-0.00690701	0/1:96.7611:52:36:1237:6:134:-48.3601,0.0,-128.912:6:12:51:.:.:1:.:.:.:-0.0142204
chr15	88637737	.	T	A	520.529	REJECT	NS=2;DP=82;DPB=89.75;AC=2;AN=3;AF=0.25;RO=58;AO=10;PRO=7.5;PAO=2.5;QR=2020;QA=196;PQR=146.0;PQA=41.0;SRF=31;SRR=27;SAF=10;SAR=0;SRP=3.60933;SAP=24.725;AB=0.121951;ABP=104.805;RUN=1;RPP=6.48466;RPPR=96.6082;RPL=7.0;RPR=3.0;EPP=6.48466;EPPR=3.0103;DPRA=0.0;ODDS=2.5537;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=3;MEANALT=3.5;LEN=1;MQM=38.4;MQMR=58.9138;PAIRED=1.0;PAIREDR=0.913793;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-3.673;Dels=0.0;FS=15.386;HaplotypeScore=18.2789;MLEAC=1;MLEAF=0.5;MQ=55.3;MQRankSum=-4.382;QD=0.79;ReadPosRankSum=0.466;SOR=4.687	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.4159:30:22:783:3:62:-10.9391,0.0,-75.0539:3:10:30:.:.:.:.:1:.:.:.:-0.00690701	./1:85.88055:55:36:1237:7:134:-48.3601,-9.74885,-130.474:10:18:55:46,13:75,0,1447:.:1:1:.:.:.:-0.0142204
chr15	88639672	.	G	A	9045.79	REJECT	NS=2;DP=333;DPB=392.0;AC=2;AN=4;AF=0.5;RO=87;AO=303;PRO=0.0;PAO=0.0;QR=3190;QA=11308;PQR=0.0;PQA=0.0;SRF=49;SRR=38;SAF=148;SAR=155;SRP=6.03039;SAP=3.36146;AB=0.772959;ABP=256.696;RUN=1;RPP=5.59743;RPPR=3.03526;RPL=161.0;RPR=142.0;EPP=9.03739;EPPR=5.03202;DPRA=0.0;ODDS=115.452;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5345;Dels=0.0;FS=4.6565;HaplotypeScore=7.8865;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0595;QD=26.055;ReadPosRankSum=0.355;SOR=0.597;ClippingRankSum=0.475	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:49:1796:67:2423:-186.697,0.0,-130.238:67:58:116:49,67:2238,0,1530:1:.:1:.:.:.:-0.00690701	0/1:129.501:275:38:1394:236:8885:-725.095,0.0,-51.1825:236:86:274:38,236:9164,0,703:.:1:1:.:.:.:-0.0142204
chr15	88641838	.	C	A	3372.33	PASS	SOMATIC;NS=2;DP=474;DPB=474.0;AC=1;AN=3;AF=0.25;RO=345;AO=128;PRO=0.0;PAO=0.0;QR=12976;QA=4867;PQR=0.0;PQA=0.0;SRF=186;SRR=159;SAF=63;SAR=65;SRP=7.59872;SAP=3.07816;AB=0.368876;ABP=54.8315;RUN=1;RPP=3.0103;RPPR=3.16765;RPL=64.0;RPR=64.0;EPP=18.2785;EPPR=6.94413;DPRA=2.73228;ODDS=80.1632;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994203;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.446;Dels=0.0;FS=3.612;HaplotypeScore=4.8877;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.376;QD=12.57;ReadPosRankSum=0.322;SOR=0.579	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.993:123:127:4778:0:0:0.0,-34.3885,-429.977:0:0:123:120,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:122.9965:347:218:8198:128:4867:-344.101,0.0,-643.687:128:37:346:211,126:38.0:0.38:2:4389,0,8066:.:1:1:.:.:1:-0.0142204
chr15	88642435	.	A	G	9380.73	REJECT	NS=2;DP=361;DPB=407.0;AC=2;AN=4;AF=0.5;RO=99;AO=308;PRO=0.0;PAO=0.0;QR=3715;QA=11727;PQR=0.0;PQA=0.0;SRF=45;SRR=54;SAF=154;SAR=154;SRP=4.78696;SAP=3.0103;AB=0.756757;ABP=236.062;RUN=1;RPP=3.1231;RPPR=4.78696;RPL=152.0;RPR=156.0;EPP=5.83039;EPPR=5.66432;DPRA=0.0;ODDS=160.967;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.922;Dels=0.0;FS=2.7515;HaplotypeScore=9.7282;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.5855;QD=23.515;ReadPosRankSum=0.057;SOR=0.718;ClippingRankSum=-0.471	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.909:89:53:1969:37:1400:-101.658,0.0,-152.887:36:41:89:52,36:1242,0,1865:1:.:1:.:.:.:-0.00690701	0/1:118.909:316:46:1746:271:10327:-843.037,0.0,-71.212:270:85:316:46,269:10500,0,1015:.:1:1:.:.:.:-0.0142204
chr15	88646922	.	A	G	9706.73	REJECT	NS=2;DP=338;DPB=392.0;AC=2;AN=4;AF=0.5;RO=76;AO=316;PRO=0.0;PAO=0.0;QR=2920;QA=12044;PQR=0.0;PQA=0.0;SRF=39;SRR=37;SAF=159;SAR=157;SRP=3.12459;SAP=3.03779;AB=0.806122;ABP=322.084;RUN=1;RPP=3.03779;RPPR=4.03889;RPL=159.0;RPR=157.0;EPP=5.759;EPPR=4.83891;DPRA=0.0;ODDS=94.428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.18;Dels=0.0;FS=0.727;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3975;QD=27.665;ReadPosRankSum=2.1085;SOR=0.62;ClippingRankSum=0.679	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.374:103:42:1594:63:2383:-186.053,0.0,-115.019:61:59:103:42,59:2143,0,1429:1:.:1:.:.:.:-0.00690701	0/1:121.374:286:34:1326:253:9661:-791.245,0.0,-41.5622:252:88:286:34,251:9829,0,648:.:1:1:.:.:.:-0.0142204
chr15	88650023	.	G	A	1444.48	REJECT	NS=2;DP=61;DPB=71.0;AC=2;AN=4;AF=0.5;RO=20;AO=51;PRO=0.0;PAO=0.0;QR=725;QA=1979;PQR=0.0;PQA=0.0;SRF=4;SRR=16;SAF=8;SAR=43;SRP=18.6449;SAP=55.1682;AB=0.71831;ABP=32.4016;RUN=1;RPP=15.3153;RPPR=13.8677;RPL=34.0;RPR=17.0;EPP=29.6215;EPPR=13.8677;DPRA=0.0;ODDS=20.0239;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9804;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.481;Dels=0.0;FS=1.043;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.673;QD=23.225;ReadPosRankSum=-0.08;SOR=1.0595;ClippingRankSum=-0.656	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.328:20:12:442:8:313:-22.8638,0.0,-34.5168:8:40:20:12,8:291,0,429:1:.:1:.:.:.:-0.00690701	0/1:92.98145:51:8:283:43:1666:-136.291,0.0,-11.6602:43:84:51:8,43:1727,0,150:.:1:1:.:.:.:-0.0142204
chr15	88650170	.	T	TA	151.48	REJECT	NS=2;DP=83;DPB=97.2857;AC=2;AN=2;AF=0.0;RO=50;AO=8;PRO=7.75;PAO=7.75;QR=1776;QA=266;PQR=265.5;PQA=265.5;SRF=46;SRR=4;SAF=6;SAR=2;SRP=79.6198;SAP=7.35324;AB=0.0963855;ABP=120.453;RUN=1;RPP=7.35324;RPPR=24.0302;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=17.0814;DPRA=0.0;ODDS=2.49659;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.875;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.1804:27:20:716:2:43:-0.789922,-2.88492,-61.532:2:8:25:.:.:1:.:.:.:-0.00690701	./1:100.3:56:30:1060:6:223:-22.1237,-11.8001,-97.5333:6:13:48:.:.:1:.:.:.:-0.0142204
chr15	88650170	.	TA	T	151.48	REJECT	NS=2;DP=83;DPB=97.2857;AC=2;AN=4;AF=0.5;RO=50;AO=11;PRO=7.75;PAO=8.75;QR=1776;QA=406;PQR=265.5;PQA=300.5;SRF=46;SRR=4;SAF=11;SAR=0;SRP=79.6198;SAP=26.8965;AB=0.13253;ABP=100.36;RUN=1;RPP=7.94546;RPPR=24.0302;RPL=3.0;RPR=8.0;EPP=7.94546;EPPR=17.0814;DPRA=0.0;ODDS=2.49659;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.9091;MQMR=60.0;PAIRED=0.909091;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.714;FS=2.588;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.224;QD=2.13;RPA=14,13;RU=A;ReadPosRankSum=-0.352;SOR=0.211;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.1804:27:20:716:2:75:-0.789922,0.0,-58.6365:2:8:25:.:.:.:.:1:.:.:.:-0.00690701	0/1:99.65:58:30:1060:9:331:-22.1237,0.0,-84.6481:12:24:51:39,16:167,0,690:.:1:1:.:.:.:-0.0142204
chr15	88650170	.	TAA	T	151.48	REJECT	NS=2;DP=83;DPB=97.2857;AC=2;AN=2;AF=0.0;RO=50;AO=4;PRO=7.75;PAO=6.75;QR=1776;QA=144;PQR=265.5;PQA=232.5;SRF=46;SRR=4;SAF=3;SAR=1;SRP=79.6198;SAP=5.18177;AB=0.0481928;ABP=150.173;RUN=1;RPP=3.0103;RPPR=24.0302;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=17.0814;DPRA=0.0;ODDS=2.49659;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=3;MEANALT=7.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.1804:27:20:716:1:39:-0.789922,-3.79116,-69.7386:1:4:25:.:.:1:.:.:.:-0.00690701	./1:100.3:56:30:1060:3:105:-22.1237,-23.2421,-127.082:3:6:48:.:.:1:.:.:.:-0.0142204
chr15	88650278	.	TATG	T	3491.45	REJECT	NS=2;DP=154;DPB=138.5;AC=2;AN=4;AF=0.5;RO=52;AO=127;PRO=10.5;PAO=9.5;QR=1973;QA=4492;PQR=348.0;PQA=309.0;SRF=27;SRR=25;SAF=65;SAR=62;SRP=3.17734;SAP=3.16418;AB=0.709497;ABP=71.2479;RUN=1;RPP=5.8999;RPPR=3.67845;RPL=57.0;RPR=70.0;EPP=6.8574;EPPR=4.51363;DPRA=0.0;ODDS=118.799;GTI=0;TYPE=del;CIGAR=1M3D4M;NUMALT=1;MEANALT=1.0;LEN=3;MQM=60.315;MQMR=60.0;PAIRED=0.992126;PAIREDR=0.980769;technology.ILLUMINA=1.0;MQ0=0;END=88650281;HOMLEN=3;HOMSEQ=ATG;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=0.0215;FS=4.8395;MLEAC=1;MLEAF=0.5;MQ=60.265;MQRankSum=-0.1405;QD=24.705;RPA=2,1;RU=ATG;ReadPosRankSum=1.7665;SOR=0.333;STR;ClippingRankSum=0.263	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.735:56:27:1027:29:1021:-76.5209,0.0,-80.5966:29:52:57:28,35:1114,0,1319:1:.:1:1:.:.:-0.00690701	0/1:120.735:126:25:946:98:3471:-279.063,0.0,-51.8969:98:80:123:26,132:5404,0,1115:.:1:1:1:.:.:-0.0142204
chr15	88650413	.	T	C	2003.0	REJECT	NS=2;DP=87;DPB=97.0;AC=2;AN=4;AF=0.5;RO=29;AO=68;PRO=0.0;PAO=0.0;QR=1096;QA=2630;PQR=0.0;PQA=0.0;SRF=5;SRR=24;SAF=15;SAR=53;SRP=30.0414;SAP=49.1222;AB=0.701031;ABP=37.0599;RUN=1;RPP=4.1599;RPPR=3.08518;RPL=37.0;RPR=31.0;EPP=3.52123;EPPR=4.88226;DPRA=0.0;ODDS=56.4321;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.792;Dels=0.0;FS=2.517;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5435;QD=21.66;ReadPosRankSum=-0.4665;SOR=0.3235;ClippingRankSum=-0.367	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:19:11:393:9:336:-24.9435,0.0,-30.0913:9:46:19:10,9:280,0,337:1:.:1:.:.:.:-0.00690701	0/1:129.501:77:18:703:59:2294:-185.676,0.0,-42.4109:59:77:77:18,59:2344,0,557:.:1:1:.:.:.:-0.0142204
chr15	88650510	.	C	T	1818.16	REJECT	NS=2;DP=68;DPB=81.0;AC=2;AN=4;AF=0.5;RO=18;AO=63;PRO=0.0;PAO=0.0;QR=685;QA=2352;PQR=0.0;PQA=0.0;SRF=9;SRR=9;SAF=34;SAR=29;SRP=3.0103;SAP=3.872;AB=0.777778;ABP=57.2971;RUN=1;RPP=12.9715;RPPR=3.0103;RPL=23.0;RPR=40.0;EPP=21.2438;EPPR=15.074;DPRA=0.0;ODDS=5.06109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.5275;Dels=0.0;FS=0.8715;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.231;QD=23.045;ReadPosRankSum=0.2785;SOR=0.7745;ClippingRankSum=-0.205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.396:26:13:490:13:447:-33.3047,0.0,-37.1897:13:50:26:13,13:419,0,474:1:.:1:.:.:.:-0.00690701	0/1:37.50375:55:5:195:50:1905:-156.721,0.0,-2.6412:50:91:55:5,50:1978,0,53:.:1:1:.:.:.:-0.0142204
chr15	88650694	.	G	A	6558.55	REJECT	NS=2;DP=254;DPB=289.0;AC=2;AN=4;AF=0.5;RO=71;AO=218;PRO=0.0;PAO=0.0;QR=2703;QA=8393;PQR=0.0;PQA=0.0;SRF=48;SRR=23;SAF=160;SAR=58;SRP=22.1254;SAP=106.643;AB=0.754325;ABP=165.375;RUN=1;RPP=43.8101;RPPR=8.17902;RPL=77.0;RPR=141.0;EPP=3.6478;EPPR=3.04088;DPRA=0.0;ODDS=162.986;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995413;PAIREDR=0.985915;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7405;Dels=0.0;FS=6.6395;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.5775;QD=25.605;ReadPosRankSum=-0.2045;SOR=0.9215;ClippingRankSum=1.772	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.8905:69:33:1238:36:1380:-105.576,0.0,-92.7859:36:52:69:33,36:1305,0,1174:1:.:1:.:.:.:-0.00690701	0/1:119.8905:219:38:1465:182:7013:-571.294,0.0,-72.1814:181:83:219:38,181:7191,0,969:.:1:1:.:.:.:-0.0142204
chr15	88650719	.	A	G	7904.77	REJECT	NS=2;DP=305;DPB=348.0;AC=2;AN=4;AF=0.5;RO=87;AO=261;PRO=0.0;PAO=0.0;QR=3361;QA=9998;PQR=0.0;PQA=0.0;SRF=55;SRR=32;SAF=176;SAR=85;SRP=16.2139;SAP=71.9067;AB=0.75;ABP=191.928;RUN=1;RPP=15.6647;RPPR=3.23494;RPL=111.0;RPR=150.0;EPP=4.88226;EPPR=3.03526;DPRA=0.0;ODDS=166.428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992337;PAIREDR=0.988506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.491;Dels=0.0;FS=0.729;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.32;QD=24.2;ReadPosRankSum=0.537;SOR=0.753;ClippingRankSum=-0.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:46:1755:39:1483:-110.477,0.0,-134.967:39:46:85:46,39:1337,0,1668:1:.:1:.:.:.:-0.00690701	0/1:129.501:262:41:1606:222:8515:-694.681,0.0,-73.2498:221:84:262:41,221:8674,0,1028:.:1:1:.:.:.:-0.0142204
chr15	88651194	.	T	C	9021.650000000001	REJECT	NS=2;DP=342;DPB=398.0;AC=2;AN=4;AF=0.5;RO=98;AO=300;PRO=0.0;PAO=0.0;QR=3686;QA=11396;PQR=0.0;PQA=0.0;SRF=47;SRR=51;SAF=149;SAR=151;SRP=3.36483;SAP=3.03925;AB=0.753769;ABP=225.635;RUN=1;RPP=10.4223;RPPR=4.4284;RPL=134.0;RPR=166.0;EPP=3.03925;EPPR=10.1895;DPRA=0.0;ODDS=230.865;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8865;Dels=0.0;FS=0.6425;HaplotypeScore=2.923;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9755;QD=26.015;ReadPosRankSum=0.456;SOR=0.6895;ClippingRankSum=-0.504	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.5415:112:45:1700:67:2581:-201.944,0.0,-122.66:67:60:112:45,67:2355,0,1530:1:.:1:.:.:.:-0.00690701	0/1:120.5415:286:53:1986:233:8815:-715.467,0.0,-101.227:233:81:286:53,233:8968,0,1362:.:1:1:.:.:.:-0.0142204
chr15	88651207	.	C	G	8978.07	REJECT	NS=2;DP=336;DPB=390.0;AC=2;AN=4;AF=0.5;RO=96;AO=294;PRO=0.0;PAO=0.0;QR=3679;QA=11235;PQR=0.0;PQA=0.0;SRF=46;SRR=50;SAF=142;SAR=152;SRP=3.37221;SAP=3.7489;AB=0.753846;ABP=221.293;RUN=1;RPP=8.00321;RPPR=3.10078;RPL=134.0;RPR=160.0;EPP=6.5851;EPPR=7.44372;DPRA=0.0;ODDS=222.419;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0565;Dels=0.0;FS=0.648;HaplotypeScore=4.8239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0875;QD=26.165;ReadPosRankSum=0.9175;SOR=0.7045;ClippingRankSum=1.472	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.2525:107:45:1754:63:2375:-184.485,0.0,-128.621:63:58:107:44,63:2207,0,1604:1:.:1:.:.:.:-0.00690701	0/1:118.2525:282:51:1925:231:8860:-720.55,0.0,-96.7981:231:82:282:51,231:9043,0,1331:.:1:1:.:.:.:-0.0142204
chr15	88651749	.	C	T	10577.9	REJECT	NS=2;DP=375;DPB=432.0;AC=2;AN=4;AF=0.5;RO=88;AO=344;PRO=0.0;PAO=0.0;QR=3413;QA=13133;PQR=0.0;PQA=0.0;SRF=45;SRR=43;SAF=174;SAR=170;SRP=3.109;SAP=3.1113;AB=0.796296;ABP=332.431;RUN=1;RPP=3.91929;RPPR=3.89863;RPL=166.0;RPR=178.0;EPP=3.41429;EPPR=4.58955;DPRA=0.0;ODDS=104.054;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9302;MQMR=60.0;PAIRED=0.997093;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.956;Dels=0.0;FS=1.0995;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7;QD=26.85;ReadPosRankSum=-0.5125;SOR=0.756;ClippingRankSum=0.295	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:50:1943:62:2296:-176.254,0.0,-144.541:61:55:110:49,60:2083,0,1688:1:.:1:.:.:.:-0.00690701	0/1:129.501:319:38:1470:282:10837:-888.078,0.0,-45.5315:281:88:319:38,281:11146,0,680:.:1:1:.:.:.:-0.0142204
chr15	88651839	.	G	C	10691.6	REJECT	NS=2;DP=398;DPB=464.0;AC=2;AN=4;AF=0.5;RO=116;AO=348;PRO=0.0;PAO=0.0;QR=4378;QA=13362;PQR=0.0;PQA=0.0;SRF=55;SRR=61;SAF=158;SAR=190;SRP=3.68421;SAP=9.39992;AB=0.75;ABP=254.901;RUN=1;RPP=3.03526;RPPR=3.30981;RPL=175.0;RPR=173.0;EPP=3.63429;EPPR=3.08518;DPRA=0.0;ODDS=197.285;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.982759;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9715;Dels=0.0;FS=0.717;HaplotypeScore=6.8475;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6305;QD=25.19;ReadPosRankSum=-0.4815;SOR=0.7985;ClippingRankSum=-0.554	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.905:125:65:2406:63:2434:-184.378,0.0,-181.838:62:49:125:61,62:2168,0,2082:1:.:1:.:.:.:-0.00690701	0/1:119.905:334:51:1972:285:10928:-891.897,0.0,-86.3639:283:85:334:51,282:11103,0,1204:.:1:1:.:.:.:-0.0142204
chr15	88652423	.	G	C	9170.76	REJECT	NS=2;DP=331;DPB=369.0;AC=2;AN=4;AF=0.5;RO=71;AO=297;PRO=0.0;PAO=0.0;QR=2655;QA=11373;PQR=0.0;PQA=0.0;SRF=30;SRR=41;SAF=138;SAR=159;SRP=6.71098;SAP=6.23461;AB=0.804878;ABP=300.926;RUN=1;RPP=4.24592;RPPR=3.04088;RPL=155.0;RPR=142.0;EPP=3.0761;EPPR=3.7749;DPRA=0.0;ODDS=82.4509;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996633;PAIREDR=0.985915;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.968;Dels=0.0;FS=0.0;HaplotypeScore=7.8459;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.047;QD=26.185;ReadPosRankSum=1.299;SOR=0.6165;ClippingRankSum=-0.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3845:74:35:1366:40:1532:-117.606,0.0,-102.668:39:53:74:34,39:1362,0,1189:1:.:1:.:.:.:-0.00690701	0/1:119.3845:293:36:1289:257:9841:-806.227,0.0,-36.6291:256:88:292:36,256:10092,0,544:.:1:1:.:.:.:-0.0142204
chr15	88652984	.	A	T	9253.98	REJECT	NS=2;DP=362;DPB=413.0;AC=2;AN=4;AF=0.5;RO=107;AO=306;PRO=0.0;PAO=0.0;QR=3988;QA=11618;PQR=0.0;PQA=0.0;SRF=52;SRR=55;SAF=155;SAR=151;SRP=3.19295;SAP=3.12384;AB=0.74092;ABP=211.225;RUN=1;RPP=12.2071;RPPR=4.00471;RPL=171.0;RPR=135.0;EPP=9.39698;EPPR=4.00471;DPRA=0.0;ODDS=214.73;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993464;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.006;Dels=0.0;FS=1.0835;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.137;QD=23.79;ReadPosRankSum=-0.031;SOR=0.533;ClippingRankSum=-0.821	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7305:101:54:2008:47:1782:-133.051,0.0,-153.392:47:47:101:54,48:1611,0,1891:1:.:1:.:.:.:-0.00690701	0/1:119.7305:312:53:1980:259:9836:-800.24,0.0,-93.6261:259:83:312:53,259:10032,0,1276:.:1:1:.:.:.:-0.0142204
chr15	88653375	.	A	G	9860.4	REJECT	NS=2;DP=359;DPB=413.0;AC=2;AN=4;AF=0.5;RO=90;AO=323;PRO=0.0;PAO=0.0;QR=3331;QA=12289;PQR=0.0;PQA=0.0;SRF=36;SRR=54;SAF=144;SAR=179;SRP=10.8276;SAP=11.2458;AB=0.782082;ABP=288.451;RUN=1;RPP=6.56667;RPPR=3.87889;RPL=150.0;RPR=173.0;EPP=3.82376;EPPR=7.73928;DPRA=0.0;ODDS=118.716;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4065;Dels=0.0;FS=3.285;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1035;QD=26.355;ReadPosRankSum=0.083;SOR=0.4805;ClippingRankSum=0.49	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.442:107:50:1827:58:2165:-165.633,0.0,-135.202:57:53:107:50,57:2011,0,1624:1:.:1:.:.:.:-0.00690701	0/1:119.442:305:40:1504:265:10124:-828.026,0.0,-52.6816:265:87:305:40,265:10452,0,765:.:1:1:.:.:.:-0.0142204
chr15	88653435	.	T	C	10456.1	REJECT	NS=2;DP=392;DPB=451.0;AC=2;AN=4;AF=0.5;RO=105;AO=345;PRO=0.0;PAO=0.0;QR=4001;QA=13059;PQR=0.0;PQA=0.0;SRF=42;SRR=63;SAF=156;SAR=189;SRP=12.1305;SAP=9.8646;AB=0.764967;ABP=278.036;RUN=1;RPP=3.16765;RPPR=7.66346;RPL=170.0;RPR=175.0;EPP=4.42648;EPPR=3.52732;DPRA=0.0;ODDS=125.463;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994203;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8235;Dels=0.0;FS=0.0;HaplotypeScore=8.7972;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.116;QD=24.215;ReadPosRankSum=-0.0295;SOR=0.604;ClippingRankSum=0.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.382:116:63:2384:54:2047:-152.539,0.0,-182.873:53:46:116:63,53:1742,0,2201:1:.:1:.:.:.:-0.00690701	0/1:120.382:333:42:1617:291:11012:-900.312,0.0,-55.2891:290:87:332:42,290:11237,0,821:.:1:1:.:.:.:-0.0142204
chr15	88653528	.	A	C	10547.3	REJECT	NS=2;DP=408;DPB=462.0;AC=2;AN=4;AF=0.5;RO=108;AO=354;PRO=0.0;PAO=0.0;QR=4046;QA=13196;PQR=0.0;PQA=0.0;SRF=56;SRR=52;SAF=179;SAR=175;SRP=3.332;SAP=3.10845;AB=0.766234;ABP=287.445;RUN=1;RPP=6.54354;RPPR=5.9056;RPL=189.0;RPR=165.0;EPP=7.15695;EPPR=5.9056;DPRA=0.0;ODDS=171.783;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991525;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.399;Dels=0.0;FS=2.594;HaplotypeScore=4.7847;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.291;QD=24.17;ReadPosRankSum=0.912;SOR=0.5915;ClippingRankSum=2.084	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.2795:106:57:2145:50:1816:-134.47,0.0,-164.108:49:47:106:56,49:1681,0,1965:1:.:1:.:.:.:-0.00690701	0/1:118.2795:355:51:1901:304:11380:-927.456,0.0,-74.9245:304:86:355:51,304:11602,0,1088:.:1:1:.:.:.:-0.0142204
chr15	88653595	.	T	C	8743.02	REJECT	NS=2;DP=342;DPB=392.0;AC=2;AN=4;AF=0.5;RO=104;AO=288;PRO=0.0;PAO=0.0;QR=3979;QA=10980;PQR=0.0;PQA=0.0;SRF=57;SRR=47;SAF=144;SAR=144;SRP=5.09825;SAP=3.0103;AB=0.734694;ABP=190.555;RUN=1;RPP=3.13094;RPPR=3.09382;RPL=146.0;RPR=142.0;EPP=3.13094;EPPR=3.34437;DPRA=0.0;ODDS=234.803;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8125;MQMR=60.0;PAIRED=0.993056;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.244;Dels=0.0;FS=1.4165;HaplotypeScore=9.1405;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.229;QD=24.265;ReadPosRankSum=0.7785;SOR=0.549;ClippingRankSum=-0.832	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6375:98:51:1954:48:1801:-135.278,0.0,-149.069:47:48:98:51,47:1668,0,1863:1:.:1:.:.:.:-0.00690701	0/1:118.6375:293:53:2025:240:9179:-745.333,0.0,-102.929:240:82:293:53,240:9345,0,1396:.:1:1:.:.:.:-0.0142204
chr15	88653621	.	A	G	8424.82	REJECT	NS=2;DP=333;DPB=380.0;AC=2;AN=4;AF=0.5;RO=105;AO=275;PRO=0.0;PAO=0.0;QR=4062;QA=10585;PQR=0.0;PQA=0.0;SRF=56;SRR=49;SAF=137;SAR=138;SRP=4.02365;SAP=3.0182;AB=0.723684;ABP=168.156;RUN=1;RPP=7.94546;RPPR=13.9504;RPL=150.0;RPR=125.0;EPP=3.20771;EPPR=3.52732;DPRA=0.0;ODDS=248.04;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992727;PAIREDR=0.990476;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0585;Dels=0.0;FS=3.661;HaplotypeScore=5.877;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2355;QD=23.86;ReadPosRankSum=0.919;SOR=0.665;ClippingRankSum=-1.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.5855:91:51:1978:41:1554:-114.95,0.0,-153.128:40:44:91:51,40:1456,0,1750:1:.:1:.:.:.:-0.00690701	0/1:122.5855:287:54:2084:234:9031:-734.3,0.0,-109.444:233:81:287:54,233:9221,0,1466:.:1:1:.:.:.:-0.0142204
chr15	88653811	.	A	G	8454.25	REJECT	NS=2;DP=338;DPB=383.0;AC=2;AN=4;AF=0.5;RO=101;AO=281;PRO=0.0;PAO=0.0;QR=3877;QA=10632;PQR=0.0;PQA=0.0;SRF=55;SRR=46;SAF=146;SAR=135;SRP=4.75178;SAP=3.94535;AB=0.733681;ABP=184.671;RUN=1;RPP=12.4767;RPPR=3.54779;RPL=123.0;RPR=158.0;EPP=5.24359;EPPR=3.2038;DPRA=0.0;ODDS=194.641;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992883;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9935;Dels=0.0;FS=2.2235;HaplotypeScore=11.897;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.017;QD=22.59;ReadPosRankSum=2.3465;SOR=0.6505;ClippingRankSum=-0.631	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:53:2044:36:1356:-97.9546,0.0,-159.888:35:40:88:53,35:1193,0,1944:1:.:1:.:.:.:-0.00690701	0/1:129.501:293:48:1833:245:9276:-755.002,0.0,-85.5754:245:84:293:48,245:9431,0,1204:.:1:1:.:.:.:-0.0142204
chr15	88653838	.	A	C	9201.79	REJECT	NS=2;DP=364;DPB=414.0;AC=2;AN=4;AF=0.5;RO=112;AO=302;PRO=0.0;PAO=0.0;QR=4238;QA=11548;PQR=0.0;PQA=0.0;SRF=51;SRR=61;SAF=148;SAR=154;SRP=4.94911;SAP=3.26915;AB=0.729469;ABP=192.358;RUN=1;RPP=3.47048;RPPR=12.3942;RPL=155.0;RPR=147.0;EPP=4.0457;EPPR=3.32051;DPRA=0.0;ODDS=209.001;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993377;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.996;Dels=0.0;FS=2.2505;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.114;QD=23.245;ReadPosRankSum=1.0275;SOR=0.6415;ClippingRankSum=-0.688	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.746:100:60:2270:40:1558:-113.136,0.0,-177.228:40:40:100:60,41:1443,0,2190:1:.:1:.:.:.:-0.00690701	0/1:117.746:314:52:1968:262:9990:-813.534,0.0,-91.985:262:83:314:52,262:10228,0,1266:.:1:1:.:.:.:-0.0142204
chr15	88653850	.	T	G	9217.61	REJECT	NS=2;DP=369;DPB=420.0;AC=2;AN=4;AF=0.5;RO=117;AO=302;PRO=0.0;PAO=0.0;QR=4454;QA=11588;PQR=0.0;PQA=0.0;SRF=55;SRR=62;SAF=151;SAR=151;SRP=3.91972;SAP=3.0103;AB=0.719048;ABP=178.052;RUN=1;RPP=5.33996;RPPR=11.1951;RPL=160.0;RPR=142.0;EPP=8.6475;EPPR=3.17734;DPRA=0.0;ODDS=246.025;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993377;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.808;Dels=0.0;FS=3.125;HaplotypeScore=3.93;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1815;QD=22.94;ReadPosRankSum=-0.196;SOR=0.8;ClippingRankSum=1.393	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.382:101:60:2292:41:1597:-116.374,0.0,-178.928:41:41:101:60,41:1444,0,2224:1:.:1:.:.:.:-0.00690701	0/1:120.382:318:57:2162:261:9991:-812.498,0.0,-108.372:261:82:318:57,261:10204,0,1492:.:1:1:.:.:.:-0.0142204
chr15	88654165	.	T	A	9602.01	REJECT	NS=2;DP=378;DPB=435.0;AC=2;AN=4;AF=0.5;RO=110;AO=325;PRO=0.0;PAO=0.0;QR=3967;QA=12072;PQR=0.0;PQA=0.0;SRF=48;SRR=62;SAF=150;SAR=175;SRP=6.87947;SAP=7.18621;AB=0.747126;ABP=233.76;RUN=1;RPP=9.43118;RPPR=3.08926;RPL=178.0;RPR=147.0;EPP=9.43118;EPPR=9.40627;DPRA=0.0;ODDS=222.703;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996923;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.348;Dels=0.0;FS=2.33;HaplotypeScore=6.8877;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.014;QD=24.445;ReadPosRankSum=0.1305;SOR=0.657;ClippingRankSum=-0.111	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.994:110:55:1916:58:2119:-160.174,0.0,-141.875:57:52:110:51,57:1953,0,1653:1:.:1:.:.:.:-0.00690701	0/1:119.994:322:55:2051:267:9953:-808.09,0.0,-97.3302:267:83:322:55,267:10137,0,1347:.:1:1:.:.:.:-0.0142204
chr15	88654227	.	A	G	11405.9	REJECT	NS=2;DP=448;DPB=508.0;AC=2;AN=4;AF=0.5;RO=132;AO=376;PRO=0.0;PAO=0.0;QR=4981;QA=14326;PQR=0.0;PQA=0.0;SRF=59;SRR=73;SAF=184;SAR=192;SRP=6.23461;SAP=3.37991;AB=0.740157;ABP=257.5;RUN=1;RPP=41.8427;RPPR=10.9724;RPL=147.0;RPR=229.0;EPP=3.21821;EPPR=4.06314;DPRA=0.0;ODDS=315.338;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994681;PAIREDR=0.984848;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.342;Dels=0.0;FS=0.794;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.906;QD=24.81;ReadPosRankSum=-0.854;SOR=0.6345;ClippingRankSum=-0.4	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:61:2271:57:2174:-163.71,0.0,-172.418:56:48:116:59,56:2118,0,2523:1:.:1:.:.:.:-0.00690701	0/1:129.501:389:71:2710:319:12152:-987.303,0.0,-138.182:319:82:389:70,319:12381,0,1857:.:1:1:.:.:.:-0.0142204
chr15	88654247	.	A	G	11215.3	REJECT	NS=2;DP=442;DPB=503.0;AC=2;AN=4;AF=0.5;RO=134;AO=368;PRO=0.0;PAO=0.0;QR=5061;QA=14074;PQR=0.0;PQA=0.0;SRF=61;SRR=73;SAF=173;SAR=195;SRP=5.34382;SAP=5.86626;AB=0.73161;ABP=237.378;RUN=1;RPP=20.2169;RPPR=3.07512;RPL=157.0;RPR=211.0;EPP=3.10471;EPPR=4.04742;DPRA=0.0;ODDS=321.653;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994565;PAIREDR=0.977612;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.888;Dels=0.0;FS=0.3425;HaplotypeScore=5.863;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.276;QD=24.745;ReadPosRankSum=0.6215;SOR=0.7385;ClippingRankSum=-0.5	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:63:2346:56:2141:-160.476,0.0,-178.883:55:47:118:62,55:2132,0,2663:1:.:1:.:.:.:-0.00690701	0/1:129.501:382:71:2715:312:11933:-969.516,0.0,-140.503:312:81:382:70,312:12178,0,1860:.:1:1:.:.:.:-0.0142204
chr15	88654525	.	T	C	10529.6	REJECT	NS=2;DP=407;DPB=470.0;AC=2;AN=4;AF=0.5;RO=123;AO=346;PRO=0.0;PAO=0.0;QR=4613;QA=13198;PQR=0.0;PQA=0.0;SRF=50;SRR=73;SAF=162;SAR=184;SRP=12.3494;SAP=6.04785;AB=0.73617;ABP=230.71;RUN=1;RPP=3.11071;RPPR=3.16919;RPL=175.0;RPR=171.0;EPP=7.93063;EPPR=9.38348;DPRA=0.0;ODDS=196.771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99711;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.087;Dels=0.0;FS=5.3825;HaplotypeScore=12.5217;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=1.444;QD=24.04;ReadPosRankSum=-0.9855;SOR=0.4905;ClippingRankSum=-1.242	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:125:70:2613:56:2159:-160.16,0.0,-201.022:55:44:125:69,55:1932,0,2449:1:.:1:.:.:.:-0.00690701	0/1:129.501:344:53:2000:290:11039:-900.013,0.0,-87.0305:290:85:343:53,290:11288,0,1221:.:1:1:.:.:.:-0.0142204
chr15	88655122	.	GT	G	8186.365	REJECT	NS=2;DP=99;DPB=211.943;AC=2;AN=3;AF=0.25;RO=13;AO=3;PRO=29.6667;PAO=37.9167;QR=466;QA=91;PQR=1059.5;PQA=1370.5;SRF=4;SRR=9;SAF=1;SAR=2;SRP=7.18621;SAP=3.73412;AB=0.030303;ABP=192.718;RUN=1;RPP=3.73412;RPPR=3.17734;RPL=1.0;RPR=2.0;EPP=9.52472;EPPR=3.17734;DPRA=0.0;ODDS=9.73954;GTI=0;TYPE=del;CIGAR=1M1D33M;NUMALT=5;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.758;FS=0.5425;MLEAC=1;MLEAF=0.5;MQ=59.555;MQRankSum=0.204;QD=13.245;RPA=10,9;RU=T;ReadPosRankSum=1.418;SOR=0.622;STR;ClippingRankSum=0.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:100.467:44:8:287:2:76:-186.304,-15.0336,-122.574:16:30:40:28,30:689,0,619:1:.:1:.:.:.:-0.00690701	0/1:70.64925:138:5:179:1:15:-1097.35,-100.649,-100.416:70:42:105:28,139:3664,0,198:.:1:.:.:.:.:-0.0142204
chr15	88655132	.	TGTTTTTG	GTTTTTGT	12746	REJECT	NS=2;DP=99;DPB=211.943;AC=2;AN=2;AF=0.25;RO=13;AO=13;PRO=29.6667;PAO=40.5;QR=466;QA=399;PQR=1059.5;PQA=1380.08;SRF=4;SRR=9;SAF=7;SAR=6;SRP=7.18621;SAP=3.17734;AB=0.131313;ABP=119.897;RUN=1;RPP=4.51363;RPPR=3.17734;RPL=8.0;RPR=5.0;EPP=11.1951;EPPR=3.17734;DPRA=0.0;ODDS=9.73954;GTI=0;TYPE=complex;CIGAR=1M1D16M1I17M;NUMALT=5;MEANALT=16.5;LEN=35;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:101.934:30:8:287:6:158:-186.304,-9.27781,-133.163:6:26:23:.:.:1:.:.:.:-0.00690701	./1:42.2985:69:5:179:7:241:-1097.35,-59.3513,-60.3874:7:16:44:.:.:1:.:.:.:-0.0142204
chr15	88655132	.	TGTTTTTG	GTTTTTGTT	12746	REJECT	NS=2;DP=99;DPB=211.943;AC=2;AN=3;AF=0.5;RO=13;AO=32;PRO=29.6667;PAO=39.5;QR=466;QA=827;PQR=1059.5;PQA=1411.58;SRF=4;SRR=9;SAF=9;SAR=23;SRP=7.18621;SAP=16.3106;AB=0.323232;ABP=29.8795;RUN=1;RPP=16.3106;RPPR=3.17734;RPL=23.0;RPR=9.0;EPP=4.09604;EPPR=3.17734;DPRA=0.0;ODDS=9.73954;GTI=0;TYPE=complex;CIGAR=1M1D16M2I17M;NUMALT=5;MEANALT=16.5;LEN=36;MQM=58.2812;MQMR=60.0;PAIRED=0.96875;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:101.934:30:8:287:5:179:-186.304,0.0,-123.564:5:22:23:.:.:1:.:.:.:-0.00690701	./1:42.2985:69:5:179:27:648:-1097.35,-19.3256,-14.2914:27:61:44:.:.:1:.:.:.:-0.0142204
chr15	88655132	.	TGTTTTTG	GTTTTTGTTT	12746	REJECT	NS=2;DP=99;DPB=211.943;AC=1;AN=3;AF=0.0;RO=13;AO=4;PRO=29.6667;PAO=39.5;QR=466;QA=132;PQR=1059.5;PQA=1410.08;SRF=4;SRR=9;SAF=3;SAR=1;SRP=7.18621;SAP=5.18177;AB=0.057971;ABP=120.112;RUN=1;RPP=3.0103;RPPR=3.17734;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=3.17734;DPRA=0.0;ODDS=9.73954;GTI=0;TYPE=complex;CIGAR=1M1D16M3I17M;NUMALT=5;MEANALT=24.0;LEN=37;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:101.934:30:8:287:0:0:-186.304,-22.963,-148.697:0:0:23:.:.:1:.:.:.:-0.00690701	0/0:42.2985:69:5:179:4:132:-1097.35,-64.3061,-66.1418:4:9:44:.:.:.:.:.:.:-0.0142204
chr15	88655139	.	G	T	159.77	PASS	SOMATIC;DP=178;AC=1;AN=4;AF=0.5;MQ0=1;ALERT;BaseQRankSum=1.484;Dels=0.01;FS=11.222;HaplotypeScore=86.0804;MLEAC=1;MLEAF=0.5;MQ=58.06;MQRankSum=-2.078;QD=0.9;ReadPosRankSum=0.783;SOR=2.49	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00690701	0/1:158,18:176:99.0:188,0,4386:18:10:176:.:1:.:.:.:.:-0.0142204
chr15	88655139	.	G	GTT	7268.865	REJECT	NS=2;DP=99;DPB=211.943;AC=2;AN=3;AF=0.25;RO=13;AO=2;PRO=29.6667;PAO=27.9167;QR=466;QA=67;PQR=1059.5;PQA=980.25;SRF=4;SRR=9;SAF=1;SAR=1;SRP=7.18621;SAP=3.0103;AB=0.0666667;ABP=51.9408;RUN=1;RPP=7.35324;RPPR=3.17734;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=3.17734;DPRA=0.0;ODDS=9.73954;GTI=0;TYPE=ins;CIGAR=18M2I17M;NUMALT=5;MEANALT=9.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.923077;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=0.58;FS=4.1505;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-0.639;QD=8.025;RPA=12,14;RU=T;ReadPosRankSum=-1.369;SOR=1.1615;STR;ClippingRankSum=0.116	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:100.467:28:8:287:2:67:-186.304,-179.835,-222.787:7:28:25:14,13:390,0,327:1:.:1:.:.:.:-0.00690701	0/1:70.64925:121:5:179:0:0:-1097.35,-1075.94,-1096.74:35:42:63:13,70:1829,0,186:.:1:.:.:.:.:-0.0142204
chr15	88655327	.	CA	TG	2486.54	REJECT	NS=2;DP=111;DPB=134.0;AC=2;AN=4;AF=0.5;RO=36;AO=96;PRO=0.0;PAO=4.0;QR=1305;QA=3337;PQR=0.0;PQA=145.0;SRF=27;SRR=9;SAF=72;SAR=24;SRP=22.5536;SAP=55.1256;AB=0.727273;ABP=62.2323;RUN=1;RPP=4.45795;RPPR=14.8328;RPL=44.0;RPR=52.0;EPP=6.26751;EPPR=27.1378;DPRA=0.0;ODDS=60.5356;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=40.2188;MQMR=52.9444;PAIRED=1.0;PAIREDR=0.972222;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=0.2175;Dels=0.0;FS=1.265;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.5;MQ=45.27;MQRankSum=-5.011;QD=26.625;ReadPosRankSum=1.528;SOR=0.7485;ClippingRankSum=0.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:41:19:668:23:795:-58.0385,0.0,-44.3094:23:57:41:17,24:961,0,1007:1:.:1:.:.:.:-0.00690701	0/1:129.501:90:17:637:73:2542:-202.046,0.0,-32.0257:73:81:90:17,74:2804,0,451:.:1:1:.:.:.:-0.0142204
chr15	88655767	.	C	CCA	8973.17	REJECT	NS=2;DP=356;DPB=575.25;AC=2;AN=4;AF=0.5;RO=102;AO=300;PRO=14.0;PAO=18.0;QR=3893;QA=11131;PQR=446.0;PQA=588.0;SRF=41;SRR=61;SAF=157;SAR=143;SRP=11.5259;SAP=4.429;AB=0.744417;ABP=212.124;RUN=1;RPP=7.17953;RPPR=3.35092;RPL=138.0;RPR=162.0;EPP=3.03925;EPPR=9.90792;DPRA=0.0;ODDS=150.424;GTI=0;TYPE=ins;CIGAR=1M2I3M;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.1667;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990196;technology.ILLUMINA=1.0;MQ0=0;END=88655767;HOMLEN=2;HOMSEQ=CA;SVLEN=2;SVTYPE=INS;BaseQRankSum=0.7355;FS=8.202;MLEAC=1;MLEAF=0.5;MQ=60.235;MQRankSum=0.129;QD=21.8;RPA=1,2;RU=CA;ReadPosRankSum=-0.657;SOR=0.6365;STR;ClippingRankSum=0.141	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:59:2253:49:1830:-135.436,0.0,-173.534:55:49:113:66,73:2129,0,2274:1:.:1:1:.:.:-0.00690701	0/1:129.501:302:43:1640:251:9301:-768.754,0.0,-66.8507:263:85:306:84,357:12358,0,1257:.:1:1:1:.:.:-0.0142204
chr15	88655800	.	A	T	10472.5	REJECT	NS=2;DP=393;DPB=450.0;AC=2;AN=4;AF=0.5;RO=108;AO=342;PRO=0.0;PAO=0.0;QR=3992;QA=13067;PQR=0.0;PQA=0.0;SRF=44;SRR=64;SAF=170;SAR=172;SRP=11.0528;SAP=3.0357;AB=0.76;ABP=267.235;RUN=1;RPP=3.0357;RPPR=3.73412;RPL=170.0;RPR=172.0;EPP=6.08338;EPPR=12.7417;DPRA=0.0;ODDS=155.573;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2632;MQMR=59.7778;PAIRED=0.997076;PAIREDR=0.990741;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.172;Dels=0.0;FS=3.7385;HaplotypeScore=8.7283;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=-0.621;QD=25.33;ReadPosRankSum=0.4845;SOR=0.425;ClippingRankSum=-1.203	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:61:2220:52:1979:-147.906,0.0,-169.189:52:46:112:59,52:1898,0,2032:1:.:1:.:.:.:-0.00690701	0/1:129.501:337:47:1772:290:11088:-906.049,0.0,-68.1511:290:86:337:47,290:11426,0,945:.:1:1:.:.:.:-0.0142204
chr15	88656247	.	C	G	9830.8	REJECT	NS=2;DP=348;DPB=400.0;AC=2;AN=4;AF=0.5;RO=83;AO=317;PRO=0.0;PAO=0.0;QR=3166;QA=12240;PQR=0.0;PQA=0.0;SRF=42;SRR=41;SAF=166;SAR=151;SRP=3.03646;SAP=4.55157;AB=0.7925;ABP=300.263;RUN=1;RPP=3.18155;RPPR=4.29225;RPL=156.0;RPR=161.0;EPP=33.7603;EPPR=4.29225;DPRA=0.0;ODDS=58.0227;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996845;PAIREDR=0.987952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5095;Dels=0.0;FS=1.62;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.412;QD=22.915;ReadPosRankSum=1.4015;SOR=0.657;ClippingRankSum=0.441	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.334:101:52:1979:50:1928:-145.901,0.0,-150.482:49:49:101:51,49:1746,0,1792:1:.:1:.:.:.:-0.00690701	0/1:117.334:297:31:1187:267:10312:-846.787,0.0,-26.0521:266:90:297:30,266:10601,0,390:.:1:1:.:.:.:-0.0142204
chr15	88656542	.	C	T	153.782	REJECT	NS=2;DP=31;DPB=89.2759;AC=2;AN=2;AF=0.0;RO=3;AO=7;PRO=24.2;PAO=11.3333;QR=101;QA=167;PQR=874.0;PQA=280.333;SRF=2;SRR=1;SAF=0;SAR=7;SRP=3.73412;SAP=18.2106;AB=0.225806;ABP=23.254;RUN=1;RPP=5.80219;RPPR=3.73412;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=3.73412;DPRA=0.0;ODDS=5.27356e-15;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=5;MEANALT=9.5;LEN=1;MQM=43.1429;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.24614:10:0:0:2:52:0.0,-17.9731,-283.331:2:33:6:.:.:1:.:.:.:-0.00690701	./1:35.507:21:3:101:5:115:-18.0841,-79.0381,-964.247:5:38:13:.:.:1:.:.:.:-0.0142204
chr15	88656542	.	C	CT	153.782	REJECT	NS=2;DP=31;DPB=89.2759;AC=2;AN=3;AF=0.25;RO=3;AO=2;PRO=24.2;PAO=27.2;QR=101;QA=29;PQR=874.0;PQA=940.5;SRF=2;SRR=1;SAF=0;SAR=2;SRP=3.73412;SAP=7.35324;AB=0.0952381;ABP=32.8939;RUN=1;RPP=7.35324;RPPR=3.73412;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=3.73412;DPRA=0.0;ODDS=5.27356e-15;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=5;MEANALT=12.0;LEN=1;MQM=52.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:1.24614:10:0:0:0:0:0.0,0.0,0.0:0:0:6:.:.:1:.:.:.:-0.00690701	./1:35.507:21:3:101:2:29:-18.0841,-2.33842,-8.50893:2:15:13:.:.:1:.:.:.:-0.0142204
chr15	88656542	.	C	CTT	153.782	REJECT	NS=2;DP=31;DPB=89.2759;AC=2;AN=3;AF=0.25;RO=3;AO=2;PRO=24.2;PAO=25.2;QR=101;QA=78;PQR=874.0;PQA=911.5;SRF=2;SRR=1;SAF=2;SAR=0;SRP=3.73412;SAP=7.35324;AB=0.0952381;ABP=32.8939;RUN=1;RPP=7.35324;RPPR=3.73412;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=3.73412;DPRA=0.0;ODDS=5.27356e-15;GTI=0;TYPE=ins;CIGAR=1M2I28M;NUMALT=5;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.24614:10:0:0:0:0:0.0,0.0,0.0:0:0:6:.:.:1:.:.:.:-0.00690701	0/1:35.507:21:3:101:2:78:-18.0841,0.0,-6.65606:2:15:13:.:.:1:.:.:.:-0.0142204
chr15	88656542	.	CT	C	153.782	REJECT	NS=2;DP=31;DPB=89.2759;AC=2;AN=2;AF=0.0;RO=3;AO=2;PRO=24.2;PAO=16.5333;QR=101;QA=31;PQR=874.0;PQA=562.333;SRF=2;SRR=1;SAF=1;SAR=1;SRP=3.73412;SAP=3.0103;AB=0.2;ABP=10.8276;RUN=1;RPP=7.35324;RPPR=3.73412;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=3.73412;DPRA=0.0;ODDS=5.27356e-15;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=5;MEANALT=7.0;LEN=1;MQM=51.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.24614:10:0:0:2:31:0.0,-2.6361,-56.467:2:33:6:.:.:1:.:.:.:-0.00690701	./1:35.507:21:3:101:0:0:-18.0841,-34.0846,-228.363:0:0:13:.:.:1:.:.:.:-0.0142204
chr15	88656542	.	CTT	C	153.782	REJECT	NS=2;DP=31;DPB=89.2759;AC=2;AN=2;AF=0.0;RO=3;AO=3;PRO=24.2;PAO=15.5333;QR=101;QA=57;PQR=874.0;PQA=547.333;SRF=2;SRR=1;SAF=0;SAR=3;SRP=3.73412;SAP=9.52472;AB=0.0967742;ABP=46.79;RUN=1;RPP=3.73412;RPPR=3.73412;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.73412;DPRA=0.0;ODDS=5.27356e-15;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=5;MEANALT=9.5;LEN=2;MQM=53.3333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:1.24614:10:0:0:2:42:0.0,-1.66094,-55.4827:2:33:6:.:.:1:.:.:.:-0.00690701	./1:35.507:21:3:101:1:15:-18.0841,-34.0846,-228.363:1:8:13:.:.:1:.:.:.:-0.0142204
chr15	88657531	.	T	A	10924.8	REJECT	NS=2;DP=407;DPB=463.0;AC=2;AN=4;AF=0.5;RO=106;AO=357;PRO=0.0;PAO=0.0;QR=4063;QA=13614;PQR=0.0;PQA=0.0;SRF=49;SRR=57;SAF=171;SAR=186;SRP=4.32138;SAP=4.37888;AB=0.771058;ABP=298.485;RUN=1;RPP=3.50299;RPPR=5.05886;RPL=183.0;RPR=174.0;EPP=3.74629;EPPR=3.0103;DPRA=0.0;ODDS=141.434;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9944;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.606;Dels=0.0;FS=2.961;HaplotypeScore=14.6801;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.405;QD=24.645;ReadPosRankSum=-0.636;SOR=0.6605;ClippingRankSum=-0.818	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:61:2321:51:1888:-139.582,0.0,-178.578:50:46:110:59,50:1680,0,2115:1:.:1:.:.:.:-0.00690701	0/1:129.501:351:45:1742:306:11726:-959.58,0.0,-61.6565:306:87:351:45,306:12057,0,915:.:1:1:.:.:.:-0.0142204
chr15	88659669	.	T	TA	529.718	REJECT	NS=2;DP=331;DPB=382.111;AC=2;AN=2;AF=0.0;RO=237;AO=29;PRO=46.0;PAO=38.0;QR=8888;QA=1083;PQR=1513.0;PQA=1236.0;SRF=135;SRR=102;SAF=19;SAR=10;SRP=12.9881;SAP=9.07545;AB=0.0876133;ABP=491.946;RUN=1;RPP=3.68421;RPPR=44.14;RPL=13.0;RPR=16.0;EPP=3.68421;EPPR=7.85717;DPRA=0.0;ODDS=8.99451;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=59.9283;PAIRED=0.965517;PAIREDR=0.995781;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:39.0441:76:59:2220:5:189:-4.32649,-4.93731,-189.973:5:7:71:.:.:1:.:.:.:-0.00690701	./1:149.769:255:178:6668:24:894:-54.9111,-31.1051,-596.464:24:10:238:.:.:1:.:.:.:-0.0142204
chr15	88659669	.	TA	T	529.718	REJECT	NS=2;DP=331;DPB=382.111;AC=2;AN=4;AF=0.5;RO=237;AO=43;PRO=46.0;PAO=34.0;QR=8888;QA=1574;PQR=1513.0;PQA=1087.0;SRF=135;SRR=102;SAF=24;SAR=19;SRP=12.9881;SAP=4.27278;AB=0.129909;ABP=396.795;RUN=1;RPP=11.5447;RPPR=44.14;RPL=15.0;RPR=28.0;EPP=5.48477;EPPR=7.85717;DPRA=0.0;ODDS=8.99451;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=9.0;LEN=1;MQM=60.2326;MQMR=59.9283;PAIRED=1.0;PAIREDR=0.995781;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:39.0441:76:59:2220:7:274:-4.32649,0.0,-210.05:7:10:71:.:.:1:.:.:.:-0.00690701	0/1:149.769:255:178:6668:36:1300:-54.9111,0.0,-585.873:36:15:238:.:.:1:.:.:.:-0.0142204
chr15	88660829	.	A	G	15528.099999999999	REJECT	NS=2;DP=407;DPB=462.0;AC=4;AN=4;AF=1.0;RO=0;AO=462;PRO=0.0;PAO=0.0;QR=0;QA=17744;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=197;SAR=265;SRP=0.0;SAP=24.7438;AB=0.0;ABP=0.0;RUN=1;RPP=3.31111;RPPR=0.0;RPL=235.0;RPR=227.0;EPP=7.24044;EPPR=0.0;DPRA=0.0;ODDS=71.6961;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993506;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.96;SOR=1.226	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:108:4113:-370.189,-29.2622,0.0:105:100:105:0,103:4261,309,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:353:0:0:354:13631:-1225.97,-95.8748,0.0:353:100:353:0,353:15192,1051,0:.:1:1:.:.:.:-0.0142204
chr15	88661739	.	A	G	9404.39	REJECT	NS=2;DP=368;DPB=427.0;AC=2;AN=4;AF=0.5;RO=119;AO=308;PRO=0.0;PAO=0.0;QR=4563;QA=11857;PQR=0.0;PQA=0.0;SRF=65;SRR=54;SAF=149;SAR=159;SRP=5.21827;SAP=3.71532;AB=0.721311;ABP=184.666;RUN=1;RPP=4.81516;RPPR=8.28388;RPL=162.0;RPR=146.0;EPP=41.6174;EPPR=4.48836;DPRA=0.0;ODDS=216.241;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993506;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.637;Dels=0.0;FS=3.8345;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.653;QD=23.49;ReadPosRankSum=1.9765;SOR=0.7095;ClippingRankSum=-0.798	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:68:2576:50:1943:-142.903,0.0,-199.853:50:42:118:68,50:1721,0,2415:1:.:1:.:.:.:-0.00690701	0/1:129.501:309:51:1987:258:9914:-808.002,0.0,-95.061:258:83:309:51,258:10111,0,1318:.:1:1:.:.:.:-0.0142204
chr15	88662371	.	G	A	1820.73	REJECT	NS=2;DP=352;DPB=401.0;AC=2;AN=4;AF=0.5;RO=311;AO=90;PRO=0.0;PAO=0.0;QR=11946;QA=3465;PQR=0.0;PQA=0.0;SRF=156;SRR=155;SAF=50;SAR=40;SRP=3.01728;SAP=5.42305;AB=0.224439;ABP=267.491;RUN=1;RPP=4.55446;RPPR=3.01728;RPL=49.0;RPR=41.0;EPP=4.55446;EPPR=6.08946;DPRA=0.0;ODDS=156.427;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990354;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.686;Dels=0.0;FS=5.4275;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0645;QD=10.655;ReadPosRankSum=1.178;SOR=1.256;ClippingRankSum=0.148	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.9985:94:49:1873:47:1793:-135.381,0.0,-142.58:47:50:94:45,47:1699,0,1632:1:.:1:.:.:.:-0.00690701	0/1:121.9985:304:262:10073:43:1672:-67.7633,0.0,-823.418:43:14:304:260,43:982,0,10293:.:1:1:.:.:.:-0.0142204
chr15	88667948	.	T	C	9960.89	REJECT	NS=2;DP=369;DPB=424.0;AC=2;AN=4;AF=0.5;RO=97;AO=327;PRO=0.0;PAO=0.0;QR=3713;QA=12478;PQR=0.0;PQA=0.0;SRF=40;SRR=57;SAF=187;SAR=140;SRP=9.47994;SAP=17.6794;AB=0.771226;ABP=273.932;RUN=1;RPP=3.54819;RPPR=19.3299;RPL=168.0;RPR=159.0;EPP=4.50443;EPPR=6.79359;DPRA=0.0;ODDS=240.966;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8716;MQMR=60.0;PAIRED=0.993884;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.157;Dels=0.0;FS=10.4505;HaplotypeScore=10.7896;MLEAC=1;MLEAF=0.5;MQ=59.955;MQRankSum=-0.524;QD=27.275;ReadPosRankSum=1.706;SOR=0.6725;ClippingRankSum=-0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1415:107:39:1505:70:2662:-210.042,0.0,-105.944:69:65:107:36,69:2436,0,1162:1:.:1:.:.:.:-0.00690701	0/1:119.1415:314:58:2208:257:9816:-797.397,0.0,-113.329:256:82:314:58,256:9956,0,1523:.:1:1:.:.:.:-0.0142204
chr15	88668501	.	C	T	10804.9	REJECT	NS=2;DP=412;DPB=464.0;AC=2;AN=4;AF=0.5;RO=111;AO=353;PRO=0.0;PAO=0.0;QR=4257;QA=13487;PQR=0.0;PQA=0.0;SRF=54;SRR=57;SAF=180;SAR=173;SRP=3.18637;SAP=3.31172;AB=0.760776;ABP=277.084;RUN=1;RPP=6.85497;RPPR=3.18637;RPL=189.0;RPR=164.0;EPP=4.78808;EPPR=3.02986;DPRA=0.0;ODDS=226.406;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991501;PAIREDR=0.981982;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.611;Dels=0.0;FS=11.65;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4845;QD=24.655;ReadPosRankSum=0.355;SOR=0.5395;ClippingRankSum=-1.342	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.058:100:54:2067:47:1779:-132.759,0.0,-158.692:47:47:100:52,47:1647,0,1872:1:.:1:.:.:.:-0.00690701	0/1:128.058:361:57:2190:306:11708:-954.74,0.0,-98.6673:304:84:361:57,303:11953,0,1352:.:1:1:.:.:.:-0.0142204
chr15	88669163	.	T	C	10587.7	REJECT	NS=2;DP=416;DPB=486.0;AC=2;AN=4;AF=0.5;RO=134;AO=352;PRO=0.0;PAO=0.0;QR=5018;QA=13321;PQR=0.0;PQA=0.0;SRF=78;SRR=56;SAF=154;SAR=198;SRP=10.8535;SAP=14.9534;AB=0.72428;ABP=215.35;RUN=1;RPP=4.21942;RPPR=3.59368;RPL=169.0;RPR=183.0;EPP=5.00904;EPPR=8.26073;DPRA=0.0;ODDS=233.435;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997159;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1325;Dels=0.0;FS=8.666;HaplotypeScore=4.8709;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.2295;QD=23.5;ReadPosRankSum=0.028;SOR=0.6795;ClippingRankSum=-0.694	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:138:77:2840:63:2381:-176.383,0.0,-217.628:62:45:138:75,62:2029,0,2484:1:.:1:.:.:.:-0.00690701	0/1:129.501:346:57:2178:289:10940:-890.313,0.0,-102.218:289:84:346:57,289:11240,0,1417:.:1:1:.:.:.:-0.0142204
chr15	88669382	.	G	C	10602.5	REJECT	NS=2;DP=414;DPB=473.0;AC=2;AN=4;AF=0.5;RO=124;AO=349;PRO=0.0;PAO=0.0;QR=4677;QA=13316;PQR=0.0;PQA=0.0;SRF=48;SRR=76;SAF=146;SAR=203;SRP=16.7396;SAP=23.2255;AB=0.737844;ABP=235.422;RUN=1;RPP=12.4739;RPPR=3.29049;RPL=155.0;RPR=194.0;EPP=3.0663;EPPR=3.0103;DPRA=0.0;ODDS=237.706;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994269;PAIREDR=0.991935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.097;Dels=0.0;FS=1.679;HaplotypeScore=3.8903;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.178;QD=23.45;ReadPosRankSum=1.2765;SOR=0.679;ClippingRankSum=-0.408	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.706:115:65:2458:52:1929:-141.915,0.0,-189.553:51:44:115:63,50:1663,0,2313:1:.:1:.:.:.:-0.00690701	0/1:117.706:356:59:2219:297:11387:-927.721,0.0,-103.591:297:83:356:59,297:11662,0,1429:.:1:1:.:.:.:-0.0142204
chr15	88670113	.	T	A	9367.75	REJECT	NS=2;DP=363;DPB=417.0;AC=2;AN=4;AF=0.5;RO=106;AO=309;PRO=0.0;PAO=0.0;QR=4081;QA=11743;PQR=0.0;PQA=0.0;SRF=53;SRR=53;SAF=150;SAR=159;SRP=3.0103;SAP=3.57952;AB=0.741007;ABP=213.393;RUN=1;RPP=10.6632;RPPR=5.96022;RPL=171.0;RPR=138.0;EPP=3.01733;EPPR=3.09224;DPRA=0.0;ODDS=179.949;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996764;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.443;Dels=0.0;FS=3.1245;HaplotypeScore=6.8983;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8625;QD=24.37;ReadPosRankSum=0.0605;SOR=0.506;ClippingRankSum=-0.268	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:60:2281:47:1819:-134.719,0.0,-176.305:47:45:105:56,47:1731,0,2022:1:.:1:.:.:.:-0.00690701	0/1:129.501:310:46:1800:262:9924:-809.208,0.0,-78.5317:262:85:308:46,262:10109,0,1116:.:1:1:.:.:.:-0.0142204
chr15	88670730	.	C	G	2545.82	PASS	SOMATIC;NS=2;DP=423;DPB=423.0;AC=1;AN=3;AF=0.25;RO=322;AO=100;PRO=0.0;PAO=0.0;QR=12027;QA=3800;PQR=0.0;PQA=0.0;SRF=155;SRR=167;SAF=42;SAR=58;SRP=3.98139;SAP=8.56927;AB=0.332226;ABP=76.6023;RUN=1;RPP=5.18177;RPPR=4.33207;RPL=45.0;RPR=55.0;EPP=3.79203;EPPR=9.91585;DPRA=2.46721;ODDS=76.9836;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99;PAIREDR=0.987578;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.839;Dels=0.0;FS=4.852;HaplotypeScore=4.7847;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.911;QD=11.17;ReadPosRankSum=-0.263;SOR=0.97	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:119:122:4473:0:0:0.0,-33.0076,-402.539:0:0:119:116,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:300:200:7554:100:3800:-260.6,0.0,-598.227:100:33:299:194,96:38.0:0.329:2:3378,0,7446:.:1:1:.:.:1:-0.0142204
chr15	88670758	.	T	G	9590.74	REJECT	NS=2;DP=367;DPB=431.0;AC=2;AN=4;AF=0.5;RO=115;AO=316;PRO=0.0;PAO=0.0;QR=4374;QA=12037;PQR=0.0;PQA=0.0;SRF=56;SRR=59;SAF=152;SAR=164;SRP=3.18024;SAP=3.99983;AB=0.733179;ABP=206.559;RUN=1;RPP=6.33623;RPPR=4.53977;RPL=169.0;RPR=147.0;EPP=5.23675;EPPR=14.8118;DPRA=0.0;ODDS=155.943;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993671;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.194;Dels=0.0;FS=2.6475;HaplotypeScore=9.7873;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9675;QD=24.15;ReadPosRankSum=0.473;SOR=0.6465;ClippingRankSum=1.055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4095:124:70:2700:56:2126:-157.181,0.0,-208.84:55:44:124:67,55:1874,0,2414:1:.:1:.:.:.:-0.00690701	0/1:120.4095:304:45:1674:260:9911:-808.891,0.0,-67.9804:259:85:304:45,259:10149,0,949:.:1:1:.:.:.:-0.0142204
chr15	88671372	.	G	T	7432.46	REJECT	NS=2;DP=436;DPB=502.0;AC=2;AN=4;AF=0.5;RO=235;AO=266;PRO=0.0;PAO=0.0;QR=8940;QA=10161;PQR=0.0;PQA=0.0;SRF=143;SRR=92;SAF=140;SAR=126;SRP=27.0443;SAP=4.61033;AB=0.52988;ABP=6.90338;RUN=1;RPP=12.4472;RPPR=9.74648;RPL=116.0;RPR=150.0;EPP=4.61033;EPPR=5.08937;DPRA=0.0;ODDS=390.538;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992481;PAIREDR=0.991489;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6375;Dels=0.0;FS=7.9955;HaplotypeScore=4.8814;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9055;QD=19.325;ReadPosRankSum=0.671;SOR=0.3715;ClippingRankSum=-1.009	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2875:129:61:2311:70:2690:-206.569,0.0,-172.482:69:53:129:59,69:2539,0,2040:1:.:1:.:.:.:-0.00690701	0/1:117.2875:370:174:6629:196:7471:-571.741,0.0,-496.052:195:53:369:174,195:7185,0,6343:.:1:1:.:.:.:-0.0142204
chr15	88674252	.	C	A	3267.58	PASS	SOMATIC;NS=2;DP=436;DPB=436.0;AC=1;AN=3;AF=0.25;RO=313;AO=122;PRO=0.0;PAO=0.0;QR=11762;QA=4707;PQR=0.0;PQA=0.0;SRF=142;SRR=171;SAF=56;SAR=66;SRP=8.84483;SAP=4.7902;AB=0.370821;ABP=50.6969;RUN=1;RPP=10.1299;RPPR=25.5506;RPL=51.0;RPR=71.0;EPP=16.9647;EPPR=4.18276;DPRA=3.07477;ODDS=67.0714;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.98722;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.232;Dels=0.0;FS=0.0;HaplotypeScore=8.6899;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.287;QD=13.07;ReadPosRankSum=-1.551;SOR=0.636	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:145.929:104:106:4025:0:0:0.0,-28.7028,-362.258:0:0:103:101,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:122.4645:329:207:7737:122:4707:-334.342,0.0,-606.796:122:37:329:201,120:38.0:0.376:2:4329,0,7557:.:1:1:.:.:1:-0.0142204
chr15	88674576	.	T	C	11135.2	REJECT	NS=2;DP=406;DPB=461.0;AC=2;AN=4;AF=0.5;RO=97;AO=364;PRO=0.0;PAO=0.0;QR=3568;QA=13842;PQR=0.0;PQA=0.0;SRF=50;SRR=47;SAF=181;SAR=183;SRP=3.21178;SAP=3.03416;AB=0.789588;ABP=338.807;RUN=1;RPP=3.03416;RPPR=8.04722;RPL=183.0;RPR=181.0;EPP=6.44648;EPPR=6.79359;DPRA=0.0;ODDS=120.323;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991758;PAIREDR=0.989691;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8225;Dels=0.0;FS=1.8285;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.276;QD=26.14;ReadPosRankSum=0.0505;SOR=0.86;ClippingRankSum=-1.025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:52:1912:57:2149:-163.908,0.0,-142.577:55:52:106:50,54:1942,0,1600:1:.:1:.:.:.:-0.00690701	0/1:129.501:352:45:1656:307:11693:-956.396,0.0,-53.6521:307:87:352:45,307:12015,0,758:.:1:1:.:.:.:-0.0142204
chr15	88674990	.	G	A	9532.06	REJECT	NS=2;DP=355;DPB=405.0;AC=2;AN=4;AF=0.5;RO=89;AO=316;PRO=0.0;PAO=0.0;QR=3285;QA=11899;PQR=0.0;PQA=0.0;SRF=39;SRR=50;SAF=144;SAR=172;SRP=5.96253;SAP=8.39775;AB=0.780247;ABP=279.291;RUN=1;RPP=3.0103;RPPR=3.0347;RPL=158.0;RPR=158.0;EPP=10.047;EPPR=5.96253;DPRA=0.0;ODDS=99.9182;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996835;PAIREDR=0.977528;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.417;Dels=0.0;FS=3.7325;HaplotypeScore=7.8982;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2745;QD=25.77;ReadPosRankSum=1.0295;SOR=0.6225;ClippingRankSum=0.496	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.328:96:51:1879:48:1818:-136.857,0.0,-142.309:47:49:96:46,47:1688,0,1553:1:.:1:.:.:.:-0.00690701	0/1:119.328:305:38:1406:268:10081:-823.936,0.0,-43.645:267:88:305:38,267:10305,0,640:.:1:1:.:.:.:-0.0142204
chr15	88675488	.	C	G	10904.1	REJECT	NS=2;DP=406;DPB=462.0;AC=2;AN=4;AF=0.5;RO=104;AO=358;PRO=0.0;PAO=0.0;QR=3910;QA=13586;PQR=0.0;PQA=0.0;SRF=58;SRR=46;SAF=186;SAR=172;SRP=6.01695;SAP=4.19915;AB=0.774892;ABP=306.246;RUN=1;RPP=3.03456;RPPR=3.34437;RPL=180.0;RPR=178.0;EPP=3.22866;EPPR=4.34659;DPRA=0.0;ODDS=129.992;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997207;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.046;Dels=0.0;FS=6.501;HaplotypeScore=3.9216;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.713;QD=24.795;ReadPosRankSum=-1.0505;SOR=0.452;ClippingRankSum=-0.585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5695:110:60:2214:51:1893:-140.334,0.0,-169.216:50:45:110:60,50:1721,0,1949:1:.:1:.:.:.:-0.00690701	0/1:118.5695:350:44:1696:307:11693:-956.65,0.0,-57.5014:306:87:350:44,306:11998,0,850:.:1:1:.:.:.:-0.0142204
chr15	88676794	.	C	T	9357.89	REJECT	NS=2;DP=364;DPB=427.0;AC=2;AN=4;AF=0.5;RO=119;AO=307;PRO=0.0;PAO=0.0;QR=4555;QA=11770;PQR=0.0;PQA=0.0;SRF=63;SRR=56;SAF=138;SAR=169;SRP=3.90444;SAP=9.80765;AB=0.71897;ABP=180.842;RUN=1;RPP=3.58323;RPPR=3.17453;RPL=149.0;RPR=158.0;EPP=8.16666;EPPR=4.48836;DPRA=0.0;ODDS=203.074;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9739;MQMR=60.0;PAIRED=0.993485;PAIREDR=0.97479;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6325;Dels=0.0;FS=3.179;HaplotypeScore=3.8464;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.6325;QD=23.74;ReadPosRankSum=0.5795;SOR=0.6255;ClippingRankSum=-0.019	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.305:120:70:2653:51:1954:-143.068,0.0,-205.978:50:42:120:69,50:1767,0,2427:1:.:1:.:.:.:-0.00690701	0/1:117.305:303:49:1902:256:9816:-800.298,0.0,-88.4665:255:84:303:48,254:9990,0,1192:.:1:1:.:.:.:-0.0142204
chr15	88677388	.	G	C	10693.9	REJECT	NS=2;DP=384;DPB=439.0;AC=2;AN=4;AF=0.5;RO=92;AO=344;PRO=0.0;PAO=0.0;QR=3474;QA=13282;PQR=0.0;PQA=0.0;SRF=53;SRR=39;SAF=174;SAR=170;SRP=7.63648;SAP=3.1113;AB=0.783599;ABP=309.692;RUN=1;RPP=6.64625;RPPR=3.38795;RPL=160.0;RPR=184.0;EPP=7.95924;EPPR=5.3706;DPRA=0.0;ODDS=119.18;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994186;PAIREDR=0.978261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7805;Dels=0.0;FS=4.4935;HaplotypeScore=2.9984;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.338;QD=26.305;ReadPosRankSum=0.374;SOR=0.5165;ClippingRankSum=0.748	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.7575:108:50:1907:59:2274:-175.143,0.0,-142.088:58:54:107:49,57:1985,0,1677:1:.:1:.:.:.:-0.00690701	0/1:124.7575:329:42:1567:285:11008:-901.515,0.0,-52.4008:285:87:327:42,285:11318,0,777:.:1:1:.:.:.:-0.0142204
chr15	88677816	.	C	G	6562.360000000001	REJECT	NS=2;DP=416;DPB=478.0;AC=2;AN=4;AF=0.5;RO=238;AO=240;PRO=0.0;PAO=0.0;QR=9155;QA=9156;PQR=0.0;PQA=0.0;SRF=117;SRR=121;SAF=104;SAR=136;SRP=3.15628;SAP=12.2752;AB=0.502092;ABP=3.02847;RUN=1;RPP=5.94179;RPPR=3.92268;RPL=111.0;RPR=129.0;EPP=5.94179;EPPR=5.346;DPRA=0.0;ODDS=351.47;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991667;PAIREDR=0.983193;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.269;Dels=0.0;FS=3.1105;HaplotypeScore=5.773;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.621;QD=18.83;ReadPosRankSum=0.0475;SOR=0.962;ClippingRankSum=-0.889	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:54:2069:69:2587:-199.497,0.0,-152.886:68:56:121:51,68:2466,0,1789:1:.:1:.:.:.:-0.00690701	0/1:129.501:354:184:7086:171:6569:-494.675,0.0,-541.186:171:48:354:183,171:6288,0,6842:.:1:1:.:.:.:-0.0142204
chr15	88679785	.	G	A	13990.55	REJECT	NS=2;DP=367;DPB=415.0;AC=4;AN=4;AF=1.0;RO=0;AO=415;PRO=0.0;PAO=0.0;QR=0;QA=15960;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=169;SAR=246;SRP=0.0;SAP=34.0336;AB=0.0;ABP=0.0;RUN=1;RPP=7.4108;RPPR=0.0;RPL=222.0;RPR=193.0;EPP=3.14111;EPPR=0.0;DPRA=0.0;ODDS=64.2123;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99759;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8483;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.43;SOR=1.095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:96:3668:-330.168,-26.012,0.0:96:100:96:0,96:3946,288,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:319:0:0:319:12292:-1105.55,-86.3749,0.0:319:100:319:0,319:13730,945,0:.:1:1:.:.:.:-0.0142204
chr15	88680684	.	G	A	1419.5	REJECT	NS=1;DP=107;DPB=107.0;AC=1;AN=4;AF=0.5;RO=56;AO=51;PRO=0.0;PAO=0.0;QR=2146;QA=1957;PQR=0.0;PQA=0.0;SRF=33;SRR=23;SAF=29;SAR=22;SRP=6.88793;SAP=5.09662;AB=0.476636;ABP=3.51765;RUN=1;RPP=3.3935;RPPR=8.59409;RPL=24.0;RPR=27.0;EPP=4.07475;EPPR=3.16541;DPRA=0.0;ODDS=326.853;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;BaseQRankSum=-0.322;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.172;QD=16.25;ReadPosRankSum=-0.316;SOR=0.644;ClippingRankSum=-1.799	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:56:2146:51:1957:-147.16,0.0,-164.146:50:48:105:54,50:1734,0,1885:1:.:1:.:.:.:-0.00690701	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0142204
chr15	90035012	.	T	TA	286.187	REJECT	NS=2;DP=235;DPB=277.235;AC=2;AN=2;AF=0.0;RO=180;AO=18;PRO=34.1667;PAO=30.1667;QR=6644;QA=650;PQR=1198.83;PQA=1050.83;SRF=155;SRR=25;SAF=14;SAR=4;SRP=206.887;SAP=15.074;AB=0.0765957;ABP=368.936;RUN=1;RPP=15.074;RPPR=40.8422;RPL=4.0;RPR=14.0;EPP=3.49285;EPPR=6.91895;DPRA=0.0;ODDS=14.7076;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.944444;PAIREDR=0.988889;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:63.7862:59:44:1593:6:201:-9.76279,-5.76059,-141.713:6:11:56:.:.:1:.:.:.:-0.00690701	./1:136.758:176:136:5051:12:449:-27.3229,-24.5877,-448.028:12:7:169:.:.:1:.:.:.:-0.0142204
chr15	90035012	.	TA	T	286.187	REJECT	NS=2;DP=235;DPB=277.235;AC=2;AN=4;AF=0.5;RO=180;AO=27;PRO=34.1667;PAO=29.6667;QR=6644;QA=1023;PQR=1198.83;PQA=1031.33;SRF=155;SRR=25;SAF=23;SAR=4;SRP=206.887;SAP=32.0437;AB=0.114894;ABP=305.732;RUN=1;RPP=9.52472;RPPR=40.8422;RPL=9.0;RPR=18.0;EPP=3.09072;EPPR=6.91895;DPRA=0.0;ODDS=14.7076;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=59.6296;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988889;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:63.7862:59:44:1593:6:229:-9.76279,0.0,-135.666:6:11:56:.:.:1:.:.:.:-0.00690701	0/1:136.758:176:136:5051:21:794:-27.3229,0.0,-427.757:21:12:169:.:.:1:.:.:.:-0.0142204
chr15	91312823	.	T	C	2577.83	PASS	SOMATIC;NS=2;DP=354;DPB=354.0;AC=1;AN=3;AF=0.25;RO=256;AO=98;PRO=0.0;PAO=0.0;QR=9939;QA=3790;PQR=0.0;PQA=0.0;SRF=85;SRR=171;SAF=39;SAR=59;SRP=65.7455;SAP=11.8735;AB=0.351254;ABP=56.6278;RUN=1;RPP=15.7732;RPPR=8.74434;RPL=61.0;RPR=37.0;EPP=5.22609;EPPR=3.55317;DPRA=3.72;ODDS=47.8061;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.426;Dels=0.0;FS=1.004;HaplotypeScore=5.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.758;QD=12.04;ReadPosRankSum=-1.142;SOR=0.54	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:74:75:2918:0:0:0.0,-20.336,-262.743:0:0:74:73,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:279:181:7021:98:3790:-265.322,0.0,-555.949:98:35:279:174,93:38.0:0.348:2:3388,0,7016:.:1:1:.:.:1:-0.0142204
chr15	91337479	.	G	A	2155.37	PASS	SOMATIC;NS=2;DP=363;DPB=363.0;AC=1;AN=3;AF=0.25;RO=280;AO=83;PRO=0.0;PAO=0.0;QR=10691;QA=3239;PQR=0.0;PQA=0.0;SRF=139;SRR=141;SAF=43;SAR=40;SRP=3.04132;SAP=3.24576;AB=0.321705;ABP=74.2481;RUN=1;RPP=10.5712;RPPR=3.04132;RPL=33.0;RPR=50.0;EPP=4.29225;EPPR=10.9517;DPRA=2.45714;ODDS=66.5113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9714;PAIRED=0.987952;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.714;Dels=0.0;FS=1.624;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.231;QD=10.94;ReadPosRankSum=0.332;SOR=0.631	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:103:105:4010:0:0:0.0,-28.4595,-360.932:0:0:103:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:257:175:6681:83:3239:-221.491,0.0,-531.061:82:32:257:170,79:39.0:0.315:2:2841,0,6653:.:1:1:.:.:1:-0.0142204
chr15	91337623	.	AT	A	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:40,0:40:0.25,0.0:60.0,0.0:38.485,0.0:0.0,0.0:0,0:0,0:6,34,0,0:0:0:40:.:.:.:.:0:.:-0.00690701	0/1:69,30:99:0.15942,0.133333:60.0,61.0:38.4703,38.19:0.0,0.00333333:29,12:70,13:18,51,3,27:30:30:99:.:.:.:.:1:.:-0.0142204
chr15	91341599	.	T	G	1725.26	PASS	SOMATIC;NS=2;DP=251;DPB=251.0;AC=1;AN=3;AF=0.25;RO=185;AO=66;PRO=0.0;PAO=0.0;QR=6980;QA=2568;PQR=0.0;PQA=0.0;SRF=63;SRR=122;SAF=26;SAR=40;SRP=43.8692;SAP=9.45891;AB=0.358696;ABP=34.9215;RUN=1;RPP=32.6213;RPPR=174.862;RPL=48.0;RPR=18.0;EPP=4.19474;EPPR=5.65128;DPRA=2.74627;ODDS=42.7662;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994595;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.063;Dels=0.0;FS=3.727;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.264;QD=12.57;ReadPosRankSum=-0.296;SOR=0.455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:66:67:2508:0:0:0.0,-18.1472,-225.858:0:0:66:65,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:184:118:4472:66:2568:-181.209,0.0,-352.48:66:36:184:116,64:38.0:0.352:2:2341,0,4410:.:1:1:.:.:1:-0.0142204
chr15	91346923	.	C	A	3138.1	PASS	SOMATIC;NS=2;DP=410;DPB=410.0;AC=1;AN=3;AF=0.25;RO=292;AO=117;PRO=0.0;PAO=0.0;QR=10930;QA=4516;PQR=0.0;PQA=0.0;SRF=118;SRR=174;SAF=45;SAR=72;SRP=26.3313;SAP=16.5402;AB=0.370253;ABP=49.2159;RUN=1;RPP=3.91972;RPPR=41.5614;RPL=62.0;RPR=55.0;EPP=7.18621;EPPR=3.48624;DPRA=3.3617;ODDS=59.5597;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.253;Dels=0.0;FS=4.588;HaplotypeScore=6.8038;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.207;QD=13.11;ReadPosRankSum=0.083;SOR=0.938	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:92:94:3527:0:0:0.0,-25.4405,-317.47:0:0:92:90,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:129.501:316:198:7403:117:4516:-320.943,0.0,-580.569:117:37:315:190,110:38.0:0.364:2:4170,0,7262:.:1:1:.:.:1:-0.0142204
chr15	91354505	.	C	T	2948.65	PASS	SOMATIC;NS=2;DP=414;DPB=414.0;AC=1;AN=3;AF=0.25;RO=302;AO=112;PRO=0.0;PAO=0.0;QR=11389;QA=4257;PQR=0.0;PQA=0.0;SRF=153;SRR=149;SAF=62;SAR=50;SRP=3.12534;SAP=5.80219;AB=0.366013;ABP=50.7259;RUN=1;RPP=9.29206;RPPR=5.33996;RPL=47.0;RPR=65.0;EPP=4.94911;EPPR=4.0457;DPRA=2.83333;ODDS=68.3131;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.684;Dels=0.0;FS=6.309;HaplotypeScore=6.8165;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.267;QD=12.52;ReadPosRankSum=-0.362;SOR=0.857	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:149.884:105:108:4062:0:0:0.0,-29.242,-365.583:0:0:105:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:124.442:306:194:7327:112:4257:-301.206,0.0,-576.175:112:37:306:184,105:37.0:0.363:2:3859,0,7295:.:1:1:.:.:1:-0.0142204
chr15	93510603	.	A	G	8283.715	REJECT	NS=2;DP=379;DPB=431.0;AC=3;AN=4;AF=0.75;RO=133;AO=298;PRO=0.0;PAO=0.0;QR=5140;QA=11365;PQR=0.0;PQA=0.0;SRF=69;SRR=64;SAF=159;SAR=139;SRP=3.41847;SAP=5.92503;AB=0.594512;ABP=28.4589;RUN=1;RPP=4.43852;RPPR=3.41847;RPL=142.0;RPR=156.0;EPP=10.472;EPPR=13.2146;DPRA=0.0;ODDS=65.2298;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996644;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.427;Dels=0.0;FS=0.426;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.693;QD=26.9;ReadPosRankSum=1.228;SOR=0.821	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.529:101:0:0:103:3919:-352.744,-27.903,0.0:101:100:101:0,99:3844,297,0:1:.:1:.:.:.:-0.00690701	0/1:119.529:327:133:5140:195:7446:-580.882,0.0,-373.848:194:59:327:133,194:7330,0,4779:.:1:1:.:.:.:-0.0142204
chr15	93521604	.	A	G	6512.305	REJECT	NS=2;DP=289;DPB=327.0;AC=3;AN=4;AF=0.75;RO=89;AO=238;PRO=0.0;PAO=0.0;QR=3458;QA=8849;PQR=0.0;PQA=0.0;SRF=28;SRR=61;SAF=78;SAR=160;SRP=29.5803;SAP=64.359;AB=0.646825;ABP=50.1967;RUN=1;RPP=13.5575;RPPR=4.20583;RPL=136.0;RPR=102.0;EPP=22.3163;EPPR=10.0615;DPRA=0.0;ODDS=47.777;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995798;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.49;Dels=0.0;FS=0.5405;HaplotypeScore=1.9573;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.855;QD=28.33;ReadPosRankSum=-1.935;SOR=1.1745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:73:0:0:75:2825:-254.376,-20.3233,0.0:73:100:73:0,71:2856,214,0:1:.:1:.:.:.:-0.00690701	0/1:129.501:252:89:3458:163:6024:-473.666,0.0,-242.838:163:65:252:89,163:5922,0,3127:.:1:1:.:.:.:-0.0142204
chr15	93536197	.	C	T	6757.55	REJECT	NS=2;DP=401;DPB=457.0;AC=2;AN=4;AF=0.5;RO=215;AO=242;PRO=0.0;PAO=0.0;QR=8267;QA=9232;PQR=0.0;PQA=0.0;SRF=103;SRR=112;SAF=126;SAR=116;SRP=3.82839;SAP=3.9076;AB=0.52954;ABP=6.4742;RUN=1;RPP=3.15387;RPPR=3.50519;RPL=123.0;RPR=119.0;EPP=3.0103;EPPR=5.28277;DPRA=0.0;ODDS=301.287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983471;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.402;Dels=0.0;FS=1.5235;HaplotypeScore=7.8772;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.118;QD=19.535;ReadPosRankSum=0.979;SOR=0.692;ClippingRankSum=-0.368	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7815:105:46:1790:63:2409:-187.275,0.0,-131.568:60:57:105:44,58:2134,0,1619:1:.:1:.:.:.:-0.00690701	0/1:121.7815:347:169:6477:179:6823:-519.434,0.0,-488.319:178:51:347:169,177:6539,0,6197:.:1:1:.:.:.:-0.0142204
chr15	93567864	.	A	C	7446.17	REJECT	NS=2;DP=419;DPB=482.0;AC=2;AN=4;AF=0.5;RO=220;AO=261;PRO=0.0;PAO=0.0;QR=8309;QA=9934;PQR=0.0;PQA=0.0;SRF=90;SRR=130;SAF=101;SAR=160;SRP=18.8028;SAP=31.9716;AB=0.541494;ABP=10.2185;RUN=1;RPP=6.01375;RPPR=3.36563;RPL=140.0;RPR=121.0;EPP=21.3888;EPPR=3.04978;DPRA=0.0;ODDS=404.991;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992337;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4515;Dels=0.0;FS=6.819;HaplotypeScore=6.8656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.084;QD=18.415;ReadPosRankSum=0.7225;SOR=0.6725;ClippingRankSum=-1.569	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.8965:122:63:2348:61:2330:-176.094,0.0,-177.739:59:48:122:63,58:1979,0,2026:1:.:1:.:.:.:-0.00690701	0/1:117.8965:357:157:5961:200:7604:-587.235,0.0,-439.504:199:56:356:156,199:7400,0,5590:.:1:1:.:.:.:-0.0142204
chr15	99093865	.	T	C	13647.599999999999	REJECT	NS=2;DP=364;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15452;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=193;SAR=217;SRP=0.0;SAP=6.06095;AB=0.0;ABP=0.0;RUN=1;RPP=7.16258;RPPR=0.0;RPL=219.0;RPR=191.0;EPP=6.59058;EPPR=0.0;DPRA=0.0;ODDS=59.8315;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.980488;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9552;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.69;SOR=0.789	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.865:86:0:0:89:3296:-296.737,-24.1094,0.0:86:100:86:0,83:3230,249,0:1:.:1:.:.:.:-0.00690701	1/1:126.865:319:0:0:321:12156:-1093.39,-86.9138,0.0:319:100:319:0,318:13475,942,0:.:1:1:.:.:.:-0.0142204
chr15	99100484	.	A	G	9708.435000000001	REJECT	NS=2;DP=393;DPB=447.0;AC=3;AN=4;AF=0.75;RO=115;AO=332;PRO=0.0;PAO=0.0;QR=4454;QA=12904;PQR=0.0;PQA=0.0;SRF=52;SRR=63;SAF=180;SAR=152;SRP=5.29507;SAP=8.13811;AB=0.662757;ABP=81.4699;RUN=1;RPP=3.66436;RPPR=4.53977;RPL=161.0;RPR=171.0;EPP=5.12945;EPPR=3.48236;DPRA=0.0;ODDS=67.1043;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.322;Dels=0.0;FS=3.0085;HaplotypeScore=2.9971;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.193;QD=28.39;ReadPosRankSum=1.029;SOR=0.8265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.3495:105:0:0:106:4099:-368.915,-28.7171,0.0:105:100:105:0,105:4378,315,0:1:.:1:.:.:.:-0.00690701	0/1:122.3495:340:115:4454:226:8805:-699.532,0.0,-308.253:226:66:340:114,226:8828,0,3940:.:1:1:.:.:.:-0.0142204
chr15	99251356	.	C	T	857.673	REJECT	NS=2;DP=232;DPB=264.0;AC=2;AN=4;AF=0.5;RO=213;AO=51;PRO=0.0;PAO=0.0;QR=8193;QA=1867;PQR=0.0;PQA=0.0;SRF=74;SRR=139;SAF=17;SAR=34;SRP=46.0829;SAP=15.3153;AB=0.193182;ABP=218.874;RUN=1;RPP=43.9277;RPPR=48.7743;RPL=41.0;RPR=10.0;EPP=4.07475;EPPR=3.50984;DPRA=0.0;ODDS=27.6656;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6395;Dels=0.0;FS=2.2205;HaplotypeScore=3.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.176;QD=8.095;ReadPosRankSum=-0.923;SOR=0.8355;ClippingRankSum=-1.73	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.858:65:35:1359:30:1103:-81.7126,0.0,-104.788:30:46:65:35,30:995,0,1210:1:.:1:.:.:.:-0.00690701	0/1:109.556:199:178:6834:21:764:-14.8435,0.0,-560.895:21:11:199:178,21:293,0,7031:.:1:1:.:.:.:-0.0142204
chr15	99456253	.	T	C	4796.985000000001	REJECT	NS=2;DP=135;DPB=159.0;AC=4;AN=4;AF=1.0;RO=1;AO=158;PRO=0.0;PAO=0.0;QR=34;QA=5945;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=136;SAR=22;SRP=5.18177;SAP=181.621;AB=0.0;ABP=0.0;RUN=1;RPP=43.0863;RPPR=5.18177;RPL=52.0;RPR=106.0;EPP=5.70403;EPPR=5.18177;DPRA=0.0;ODDS=33.0244;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.685;SOR=3.5285	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.1335:46:0:0:46:1744:-157.168,-12.4673,0.0:46:100:46:0,46:1940,138,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:112:1:34:112:4201:-374.985,-27.5134,0.0:111:99:112:0,111:4568,316,0:.:1:1:.:.:.:-0.0142204
chr15	99467934	.	A	C	5447.82	REJECT	NS=2;DP=237;DPB=274.0;AC=3;AN=4;AF=0.75;RO=73;AO=201;PRO=0.0;PAO=0.0;QR=2806;QA=7614;PQR=0.0;PQA=0.0;SRF=20;SRR=53;SAF=59;SAR=142;SRP=35.4039;SAP=77.4345;AB=0.635;ABP=34.6704;RUN=1;RPP=54.445;RPPR=31.5964;RPL=135.0;RPR=66.0;EPP=4.83607;EPPR=6.60959;DPRA=0.0;ODDS=47.1494;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.698;Dels=0.0;FS=0.6315;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.464;QD=27.29;ReadPosRankSum=-0.208;SOR=1.3105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.311:74:0:0:74:2783:-250.606,-20.0507,0.0:74:100:74:0,74:3058,222,0:1:.:1:.:.:.:-0.00690701	0/1:120.311:200:73:2806:127:4831:-380.44,0.0,-198.276:127:64:200:73,127:4800,0,2558:.:1:1:.:.:.:-0.0142204
chr15	99478225	.	G	A	2382.33	PASS	SOMATIC;NS=2;DP=386;DPB=386.0;AC=1;AN=3;AF=0.25;RO=294;AO=92;PRO=0.0;PAO=0.0;QR=11155;QA=3526;PQR=0.0;PQA=0.0;SRF=136;SRR=158;SAF=42;SAR=50;SRP=6.5851;SAP=4.52089;AB=0.340741;ABP=62.4926;RUN=1;RPP=7.63648;RPPR=8.00321;RPL=53.0;RPR=39.0;EPP=3.86001;EPPR=3.27619;DPRA=2.32759;ODDS=73.254;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986395;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.278;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.904;QD=11.63;ReadPosRankSum=0.114;SOR=0.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.746:112:116:4350:0:0:0.0,-31.3878,-391.454:0:0:112:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.00690701	0/1:120.373:268:178:6805:92:3526:-244.045,0.0,-538.994:92:34:268:172,90:38.0:0.344:2:3146,0,6727:.:1:1:.:.:1:-0.0142204
chr15	99604346	.	T	C	14412.15	REJECT	NS=2;DP=380;DPB=429.0;AC=4;AN=4;AF=1.0;RO=0;AO=429;PRO=0.0;PAO=0.0;QR=0;QA=16463;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=184;SAR=245;SRP=0.0;SAP=21.8449;AB=0.0;ABP=0.0;RUN=1;RPP=3.62277;RPPR=0.0;RPL=220.0;RPR=209.0;EPP=46.789;EPPR=0.0;DPRA=0.0;ODDS=65.4855;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0233;MQMR=0.0;PAIRED=0.990676;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.015;QD=29.39;SOR=1.096	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.8425:97:0:0:98:3777:-339.985,-26.5649,0.0:97:100:97:0,96:3806,288,0:1:.:1:.:.:.:-0.00690701	1/1:126.8425:331:0:0:331:12686:-1140.96,-89.5984,0.0:331:100:331:0,331:14149,978,0:.:1:1:.:.:.:-0.0142204
chr15	99604404	.	A	G	9516.52	REJECT	NS=2;DP=259;DPB=296.0;AC=4;AN=4;AF=1.0;RO=0;AO=295;PRO=0.0;PAO=0.0;QR=0;QA=11181;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=69;SAR=226;SRP=0.0;SAP=184.45;AB=0.0;ABP=0.0;RUN=1;RPP=137.163;RPPR=0.0;RPL=215.0;RPR=80.0;EPP=6.25647;EPPR=0.0;DPRA=0.0;ODDS=49.7963;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0339;MQMR=0.0;PAIRED=0.99661;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.025;QD=28.635;SOR=2.515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.672:72:0:0:73:2722:-245.072,-19.7512,0.0:72:100:72:0,71:2985,213,0:1:.:1:.:.:.:-0.00690701	1/1:125.672:222:0:0:222:8459:-760.899,-60.0892,0.0:222:100:222:0,222:9374,647,0:.:1:1:.:.:.:-0.0142204
chr15	99605041	.	A	G	14224.3	REJECT	NS=2;DP=375;DPB=428.0;AC=4;AN=4;AF=1.0;RO=0;AO=428;PRO=0.0;PAO=0.0;QR=0;QA=16340;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=218;SAR=210;SRP=0.0;SAP=3.33501;AB=0.0;ABP=0.0;RUN=1;RPP=4.65412;RPPR=0.0;RPL=205.0;RPR=223.0;EPP=37.1247;EPPR=0.0;DPRA=0.0;ODDS=70.4243;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992991;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.525;SOR=0.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.768:106:0:0:106:3969:-357.25,-28.7098,0.0:106:100:106:0,106:4282,318,0:1:.:1:.:.:.:-0.00690701	1/1:127.768:322:0:0:322:12371:-1112.69,-87.2067,0.0:322:100:322:0,322:13856,960,0:.:1:1:.:.:.:-0.0142204
chr15	99605101	.	A	G	10067.785	REJECT	NS=2;DP=271;DPB=312.0;AC=4;AN=4;AF=1.0;RO=1;AO=311;PRO=0.0;PAO=0.0;QR=34;QA=11757;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=102;SAR=209;SRP=5.18177;SAP=82.9498;AB=0.0;ABP=0.0;RUN=1;RPP=74.236;RPPR=5.18177;RPL=206.0;RPR=105.0;EPP=8.10034;EPPR=5.18177;DPRA=0.0;ODDS=50.4325;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993569;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.887;Dels=0.0;FS=2.3335;HaplotypeScore=4.8376;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.225;QD=29.33;ReadPosRankSum=1.014;SOR=1.532;ClippingRankSum=1.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:82:1:34:81:2988:-265.938,-19.1244,0.0:81:99:82:1,81:3168,206,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:230:0:0:230:8769:-788.847,-62.2919,0.0:230:100:230:0,230:9806,683,0:.:1:1:.:.:.:-0.0142204
chr15	99606243	.	A	G	13691.15	REJECT	NS=2;DP=362;DPB=415.0;AC=4;AN=4;AF=1.0;RO=0;AO=415;PRO=0.0;PAO=0.0;QR=0;QA=15848;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=229;SAR=186;SRP=0.0;SAP=12.6851;AB=0.0;ABP=0.0;RUN=1;RPP=15.5734;RPPR=0.0;RPL=183.0;RPR=232.0;EPP=3.64343;EPPR=0.0;DPRA=0.0;ODDS=69.1737;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9639;MQMR=0.0;PAIRED=0.995181;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8464;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.235;SOR=0.8405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:104:3961:-356.5,-28.1667,0.0:101:100:101:0,99:4078,297,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:310:0:0:311:11887:-1069.15,-84.204,0.0:310:100:310:0,310:13219,915,0:.:1:1:.:.:.:-0.0142204
chr15	99606489	.	G	A	14874.05	REJECT	NS=2;DP=389;DPB=451.0;AC=4;AN=4;AF=1.0;RO=0;AO=451;PRO=0.0;PAO=0.0;QR=0;QA=17425;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=178;SAR=273;SRP=0.0;SAP=46.4638;AB=0.0;ABP=0.0;RUN=1;RPP=11.9129;RPPR=0.0;RPL=247.0;RPR=204.0;EPP=6.52029;EPPR=0.0;DPRA=0.0;ODDS=80.9822;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991131;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8546;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.22;SOR=1.1565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:121:0:0:123:4707:-423.544,-33.295,0.0:121:100:121:0,119:4993,356,0:1:.:1:.:.:.:-0.00690701	1/1:129.501:327:0:0:328:12718:-1143.87,-88.8513,0.0:327:100:327:0,327:14201,978,0:.:1:1:.:.:.:-0.0142204
chr15	100514417	.	CC	TG	4828.945	REJECT	NS=2;DP=302;DPB=346.0;AC=2;AN=4;AF=0.5;RO=179;AO=163;PRO=3.0;PAO=3.0;QR=6856;QA=6258;PQR=0.0;PQA=119.0;SRF=106;SRR=73;SAF=97;SAR=66;SRP=16.2211;SAP=15.8127;AB=0.475219;ABP=4.83991;RUN=1;RPP=46.2932;RPPR=23.4027;RPL=53.0;RPR=110.0;EPP=32.4384;EPPR=8.36013;DPRA=0.0;ODDS=259.684;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.993865;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=1.635;Dels=0.0;FS=0.483;HaplotypeScore=8.8875;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4545;QD=18.16;ReadPosRankSum=1.7185;SOR=0.704;ClippingRankSum=0.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:45:1749:37:1416:-115.429,0.0,-134.699:39:46:84:45,41:1579,0,2370:1:.:1:.:.:.:-0.00690701	0/1:129.501:261:134:5107:126:4842:-385.638,0.0,-387.884:127:48:261:134,128:4821,0,4915:.:1:1:.:.:.:-0.0142204
chr15	100514494	.	T	C	5870.17	REJECT	NS=2;DP=369;DPB=421.0;AC=2;AN=4;AF=0.5;RO=213;AO=208;PRO=0.0;PAO=0.0;QR=8037;QA=7872;PQR=0.0;PQA=0.0;SRF=96;SRR=117;SAF=94;SAR=114;SRP=7.50617;SAP=7.18621;AB=0.494062;ABP=3.13925;RUN=1;RPP=3.67845;RPPR=38.4981;RPL=108.0;RPR=100.0;EPP=9.02361;EPPR=4.73321;DPRA=0.0;ODDS=294.206;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.65;Dels=0.0;FS=0.5795;HaplotypeScore=6.7988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.776;QD=16.545;ReadPosRankSum=0.6215;SOR=0.6715;ClippingRankSum=0.091	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0365:103:56:2152:48:1741:-128.532,0.0,-165.543:47:45:103:56,46:1511,0,1889:1:.:1:.:.:.:-0.00690701	0/1:119.0365:317:157:5885:160:6131:-465.641,0.0,-443.496:160:50:317:157,160:5908,0,5564:.:1:1:.:.:.:-0.0142204
chr15	102005895	.	A	AG	7256.605	REJECT	NS=2;DP=308;DPB=414.375;AC=2;AN=4;AF=0.5;RO=89;AO=257;PRO=29.0;PAO=34.0;QR=3337;QA=9160;PQR=959.5;PQA=1143.5;SRF=58;SRR=31;SAF=140;SAR=117;SRP=20.7969;SAP=7.47998;AB=0.73639;ABP=172.404;RUN=1;RPP=3.01875;RPPR=7.13366;RPL=129.0;RPR=128.0;EPP=4.03267;EPPR=3.0347;DPRA=0.0;ODDS=66.1807;GTI=0;TYPE=ins;CIGAR=1M1I7M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988327;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.019;FS=5.9455;MLEAC=1;MLEAF=0.5;MQ=60.095;MQRankSum=-0.3235;QD=17.535;RPA=5,6;RU=G;ReadPosRankSum=-1.9095;SOR=0.3235;STR;ClippingRankSum=1.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:60:2246:35:1278:-95.6897,0.0,-175.887:35:37:95:59,36:885,0,1591:1:.:1:.:.:.:-0.00690701	0/1:129.501:260:29:1091:222:7882:-649.918,0.0,-29.5139:222:88:251:29,222:7162,0,312:.:1:1:.:.:.:-0.0142204
chr15	102005913	.	A	C	8963.54	REJECT	NS=2;DP=341;DPB=397.0;AC=2;AN=4;AF=0.5;RO=98;AO=298;PRO=0.0;PAO=0.0;QR=3800;QA=11257;PQR=0.0;PQA=0.0;SRF=58;SRR=40;SAF=145;SAR=153;SRP=10.1895;SAP=3.47666;AB=0.75063;ABP=219.616;RUN=1;RPP=17.1176;RPPR=5.22609;RPL=127.0;RPR=171.0;EPP=15.8643;EPPR=17.989;DPRA=0.0;ODDS=83.4466;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.1342;MQMR=60.0;PAIRED=0.986577;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.095;Dels=0.0;FS=7.481;HaplotypeScore=3.8982;MLEAC=1;MLEAF=0.5;MQ=60.105;MQRankSum=1.019;QD=23.67;ReadPosRankSum=-1.1445;SOR=0.649;ClippingRankSum=1.36	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.378:107:65:2520:43:1648:-119.061,0.0,-197.534:42:40:107:64,42:1447,0,2372:1:.:1:.:.:.:-0.00690701	0/1:118.378:287:33:1280:255:9609:-786.343,0.0,-37.5407:253:88:286:33,252:9774,0,595:.:1:1:.:.:.:-0.0142204
chr16	338332	.	A	AC	625.094	REJECT	NS=2;DP=160;DPB=175.143;AC=2;AN=4;AF=0.5;RO=121;AO=36;PRO=9.0;PAO=10.0;QR=4488;QA=1276;PQR=313.5;PQA=327.5;SRF=14;SRR=107;SAF=4;SAR=32;SRP=158.226;SAP=50.3001;AB=0.225;ABP=108.11;RUN=1;RPP=18.4519;RPPR=46.0988;RPL=26.0;RPR=10.0;EPP=18.4519;EPPR=14.2266;DPRA=0.0;ODDS=34.68;GTI=0;TYPE=ins;CIGAR=1M1I6M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.63;FS=4.576;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.17;QD=11.42;ReadPosRankSum=-0.69;SOR=0.177;ClippingRankSum=0.23	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.959:47:24:886:20:708:-54.8503,0.0,-69.6433:22:47:46:25,24:631,0,669:1:.:1:.:.:.:-0.0183821	0/1:134.636:114:97:3602:16:568:-20.891,0.0,-293.589:16:14:113:.:.:.:.:1:.:.:.:-0.631719
chr16	359953	.	A	G	1205.45	REJECT	NS=2;DP=235;DPB=271.0;AC=2;AN=4;AF=0.5;RO=205;AO=66;PRO=0.0;PAO=0.0;QR=7824;QA=2489;PQR=0.0;PQA=0.0;SRF=136;SRR=69;SAF=45;SAR=21;SRP=50.5602;SAP=21.9613;AB=0.243542;ABP=157.826;RUN=1;RPP=6.30041;RPPR=94.6253;RPL=28.0;RPR=38.0;EPP=3.53672;EPPR=3.52933;DPRA=0.0;ODDS=148.154;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984848;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1135;Dels=0.0;FS=0.4765;HaplotypeScore=6.8047;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3265;QD=9.06;ReadPosRankSum=0.786;SOR=0.786;ClippingRankSum=-0.048	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:41:1591:31:1167:-85.574,0.0,-123.747:30:42:71:41,29:1009,0,1531:1:.:1:.:.:.:-0.0183821	0/1:129.501:199:164:6233:35:1322:-65.0545,0.0,-506.846:35:18:199:164,35:885,0,6351:.:1:1:.:.:.:-0.631719
chr16	396264	.	A	G	1704.275	REJECT	NS=2;DP=337;DPB=383.0;AC=2;AN=4;AF=0.5;RO=295;AO=88;PRO=0.0;PAO=0.0;QR=11231;QA=3366;PQR=0.0;PQA=0.0;SRF=173;SRR=122;SAF=50;SAR=38;SRP=22.1561;SAP=6.56362;AB=0.229765;ABP=245.949;RUN=1;RPP=3.40511;RPPR=5.13761;RPL=42.0;RPR=46.0;EPP=4.58955;EPPR=4.66651;DPRA=0.0;ODDS=169.06;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.965909;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7355;Dels=0.0;FS=2.9495;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.639;QD=9.91;ReadPosRankSum=0.3165;SOR=0.51;ClippingRankSum=0.004	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.971:88:45:1665:44:1662:-125.507,0.0,-125.799:44:49:88:44,44:1506,0,1570:1:.:1:.:.:.:-0.0183821	0/1:120.971:292:250:9566:44:1704:-73.6343,0.0,-780.821:42:14:292:250,41:910,0,9847:.:1:1:.:.:.:-0.631719
chr16	397044	.	G	T	1776.7150000000001	REJECT	NS=2;DP=283;DPB=328.0;AC=2;AN=4;AF=0.5;RO=248;AO=80;PRO=0.0;PAO=0.0;QR=9530;QA=3071;PQR=0.0;PQA=0.0;SRF=103;SRR=145;SAF=35;SAR=45;SRP=18.4558;SAP=5.72464;AB=0.243902;ABP=189.863;RUN=1;RPP=34.3881;RPPR=64.7922;RPL=57.0;RPR=23.0;EPP=3.44459;EPPR=7.24817;DPRA=0.0;ODDS=63.799;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9875;PAIREDR=0.995968;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.318;Dels=0.0;FS=1.438;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.348;QD=11.04;ReadPosRankSum=0.8015;SOR=0.682;ClippingRankSum=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:37:1429:52:2009:-156.738,0.0,-104.508:52:58:88:36,52:1796,0,1280:1:.:1:.:.:.:-0.0183821	0/1:129.501:239:211:8101:28:1062:-30.7897,0.0,-663.995:28:12:239:211,28:505,0,8353:.:1:1:.:.:.:-0.631719
chr16	2105400	.	C	T	2766.8	PASS	SOMATIC;NS=2;DP=368;DPB=368.0;AC=1;AN=3;AF=0.25;RO=262;AO=106;PRO=0.0;PAO=0.0;QR=9912;QA=4053;PQR=0.0;PQA=0.0;SRF=173;SRR=89;SAF=78;SAR=28;SRP=61.4909;SAP=54.2243;AB=0.386861;ABP=33.4743;RUN=1;RPP=29.5596;RPPR=53.4349;RPL=35.0;RPR=71.0;EPP=8.25461;EPPR=29.0017;DPRA=2.91489;ODDS=59.4939;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992366;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.292;Dels=0.0;FS=6.471;HaplotypeScore=4.8784;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.048;QD=13.49;ReadPosRankSum=0.503;SOR=1.143	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.107:90:94:3521:0:0:0.0,-25.4119,-316.891:0:0:90:87,0:.:0.0:0:.:.:.:0:.:.:0:-0.0183821	0/1:119.5535:273:168:6391:106:4053:-290.37,0.0,-500.678:106:39:273:160,102:38.0:0.391:2:3710,0,6284:.:1:1:.:.:1:-0.631719
chr16	2138218	.	A	C	2981.37	PASS	SOMATIC;NS=2;DP=430;DPB=430.0;AC=1;AN=3;AF=0.25;RO=316;AO=114;PRO=0.0;PAO=0.0;QR=11991;QA=4357;PQR=0.0;PQA=0.0;SRF=145;SRR=171;SAF=59;SAR=55;SRP=7.6556;SAP=3.31507;AB=0.349693;ABP=66.9821;RUN=1;RPP=3.31507;RPPR=4.35716;RPL=55.0;RPR=59.0;EPP=4.9151;EPPR=3.12025;DPRA=3.13462;ODDS=65.879;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=0.993671;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.803;Dels=0.0;FS=0.886;HaplotypeScore=2.9465;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.351;QD=11.98;ReadPosRankSum=2.063;SOR=0.739	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:101:104:3962:0:0:0.0,-28.1849,-356.622:0:0:101:99,0:.:0.0:0:.:.:.:0:.:.:0:-0.0183821	0/1:129.501:325:212:8029:114:4357:-303.644,0.0,-633.882:114:35:325:205,109:38.0:0.343:2:3923,0,7918:.:1:1:.:.:1:-0.631719
chr16	2138422	.	C	G	1883.0	PASS	SOMATIC;NS=2;DP=328;DPB=328.0;AC=1;AN=3;AF=0.25;RO=249;AO=79;PRO=0.0;PAO=0.0;QR=9540;QA=2962;PQR=0.0;PQA=0.0;SRF=138;SRR=111;SAF=41;SAR=38;SRP=9.36774;SAP=3.25768;AB=0.303846;ABP=89.9026;RUN=1;RPP=29.4253;RPPR=60.2273;RPL=24.0;RPR=55.0;EPP=3.03779;EPPR=5.5306;DPRA=3.82353;ODDS=42.5392;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987952;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.996;Dels=0.0;FS=3.023;HaplotypeScore=5.8707;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.421;QD=9.69;ReadPosRankSum=1.478;SOR=0.518	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:67:68:2556:0:0:0.0,-18.0486,-229.809:0:0:67:66,0:.:0.0:0:.:.:.:0:.:.:0:-0.0183821	0/1:129.501:257:181:6984:79:2962:-196.025,0.0,-557.811:79:30:257:174,76:37.0:0.303:2:2519,0,6915:.:1:1:.:.:1:-0.631719
chr16	2222286	.	C	T	2812.06	PASS	SOMATIC;NS=2;DP=402;DPB=402.0;AC=1;AN=3;AF=0.25;RO=293;AO=109;PRO=0.0;PAO=0.0;QR=11198;QA=4073;PQR=0.0;PQA=0.0;SRF=140;SRR=153;SAF=46;SAR=63;SRP=4.26279;SAP=8.76769;AB=0.37457;ABP=42.7759;RUN=1;RPP=3.98647;RPPR=8.41304;RPL=51.0;RPR=58.0;EPP=7.4927;EPPR=4.67781;DPRA=2.62162;ODDS=70.1393;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.023;Dels=0.0;FS=4.879;HaplotypeScore=4.9567;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.92;QD=12.39;ReadPosRankSum=-0.061;SOR=1.021	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.222:109:111:4196:0:0:0.0,-30.0352,-377.607:0:0:109:108,0:.:0.0:0:.:.:.:0:.:.:0:-0.0183821	0/1:119.111:291:182:7002:109:4073:-287.55,0.0,-551.045:109:37:291:174,104:37.0:0.375:2:3634,0,6994:.:1:1:.:.:1:-0.631719
chr16	2223860	.	T	TC	148.73	PASS	DP=80;AC=1;AN=4;AF=0.5;BaseQRankSum=-2.788;FS=131.562;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=0.788;QD=1.86;ReadPosRankSum=-1.045;SOR=6.438;ClippingRankSum=1.134	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52,24:76:99.0:186,0,4985:24:32:76:1:.:.:.:.:.:-0.0183821	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.631719
chr16	2223864	.	G	C	509.75	PASS	DP=182;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-6.607;Dels=0.0;FS=199.2505;HaplotypeScore=89.065;MLEAC=1;MLEAF=0.5;MQ=59.265;MQRankSum=-0.51;QD=4.635;ReadPosRankSum=-1.001;SOR=7.7465;ClippingRankSum=-1.219	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52,27:79:99.0:660,0,5200:27:34:79:1:.:.:.:.:.:-0.0183821	0/1:196,90:286:99.0:425,0,6123:90:31:286:.:1:.:.:.:.:-0.631719
chr16	2223864	.	GCCCA	CCCCC	246.535	REJECT	NS=2;DP=341;DPB=384.444;AC=2;AN=4;AF=0.5;RO=199;AO=66;PRO=59.6667;PAO=11.6667;QR=7242;QA=1455;PQR=1908.33;PQA=320.333;SRF=25;SRR=174;SAF=66;SAR=0;SRP=245.266;SAP=146.327;AB=0.193548;ABP=281.169;RUN=1;RPP=113.69;RPPR=12.1872;RPL=62.0;RPR=4.0;EPP=113.69;EPPR=8.78271;DPRA=0.0;ODDS=4.20892;GTI=0;TYPE=complex;CIGAR=4M1X3M1X;NUMALT=2;MEANALT=10.5;LEN=9;MQM=57.6515;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984925;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18.3432:91:49:1805:17:387:-14.4216,0.0,-167.657:17:22:77:.:.:1:.:.:.:-0.0183821	0/1:160.002:250:150:5437:49:1068:-60.4149,0.0,-544.125:49:22:222:.:.:1:.:.:.:-0.631719
chr16	2223864	.	GCCCA	CCCCCC	246.535	REJECT	NS=2;DP=341;DPB=384.444;AC=2;AN=2;AF=0.0;RO=199;AO=34;PRO=59.6667;PAO=11.6667;QR=7242;QA=584;PQR=1908.33;PQA=320.333;SRF=25;SRR=174;SAF=34;SAR=0;SRP=245.266;SAP=76.8404;AB=0.0997067;ABP=477.608;RUN=1;RPP=15.5282;RPPR=12.1872;RPL=24.0;RPR=10.0;EPP=15.5282;EPPR=8.78271;DPRA=0.0;ODDS=4.20892;GTI=0;TYPE=complex;CIGAR=1M1I3M1X3M1X;NUMALT=2;MEANALT=10.5;LEN=10;MQM=56.5;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984925;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:18.3432:91:49:1805:11:188:-14.4216,-15.9861,-185.3:11:14:77:.:.:1:.:.:.:-0.0183821	./1:160.002:250:150:5437:23:396:-60.4149,-53.1137,-603.473:23:10:222:.:.:1:.:.:.:-0.631719
chr16	2223868	.	A	C	635.27	PASS	DP=184;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-7.272;Dels=0.0;FS=203.2055;HaplotypeScore=88.0318;MLEAC=1;MLEAF=0.5;MQ=59.275;MQRankSum=0.307;QD=4.665;ReadPosRankSum=-0.8145;SOR=7.7505;ClippingRankSum=0.395	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:54,26:80:99.0:575,0,4571:26:33:80:1:.:.:.:.:.:-0.0183821	0/1:199,88:289:99.0:752,0,6373:88:31:287:.:1:.:.:.:.:-0.631719
chr16	2223872	.	T	C	814.662	REJECT	NS=2;DP=333;DPB=383.0;AC=2;AN=4;AF=0.5;RO=233;AO=139;PRO=12.5;PAO=4.5;QR=8192;QA=2739;PQR=195.0;PQA=82.0;SRF=34;SRR=199;SAF=139;SAR=0;SRP=256.737;SAP=304.845;AB=0.369681;ABP=58.4752;RUN=1;RPP=216.861;RPPR=7.94038;RPL=128.0;RPR=11.0;EPP=216.861;EPPR=3.01962;DPRA=0.0;ODDS=61.4969;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=57.777;MQMR=59.9785;PAIRED=1.0;PAIREDR=0.982833;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-6.985;Dels=0.0;FS=227.2305;HaplotypeScore=93.7086;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-0.2175;QD=7.07;ReadPosRankSum=-1.654;SOR=7.8965;ClippingRankSum=1.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7985:87:54:1875:43:875:-52.3095,0.0,-144.874:35:39:87:51,27:923,0,3246:1:.:1:.:.:.:-0.0183821	0/1:119.7985:285:179:6317:96:1864:-120.685,0.0,-501.532:96:34:282:193,97:890,0,6127:.:1:1:.:.:.:-0.631719
chr16	2237549	.	C	T	3968.46	REJECT	NS=1;DP=119;DPB=119.0;AC=2;AN=4;AF=1.0;RO=0;AO=119;PRO=0.0;PAO=0.0;QR=0;QA=4491;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=52;SAR=67;SRP=0.0;SAP=7.11603;AB=0.0;ABP=0.0;RUN=1;RPP=18.3566;RPPR=0.0;RPL=45.0;RPR=74.0;EPP=22.882;EPPR=0.0;DPRA=0.0;ODDS=78.8434;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991597;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.25;SOR=1.035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:119:4491:-404.197,-32.2412,0.0:116:100:116:0,113:4426,339,0:1:.:1:.:.:.:-0.0183821	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.631719
chr16	2496724	.	T	G	12965.05	REJECT	NS=2;DP=345;DPB=396.0;AC=4;AN=4;AF=1.0;RO=0;AO=393;PRO=0.0;PAO=0.0;QR=0;QA=15033;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=212;SAR=181;SRP=0.0;SAP=8.32019;AB=0.0;ABP=0.0;RUN=1;RPP=15.2159;RPPR=0.0;RPL=173.0;RPR=220.0;EPP=8.32019;EPPR=0.0;DPRA=0.0;ODDS=66.0814;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992366;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=59.975;QD=29.885;SOR=0.9525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0605:98:0:0:99:3747:-337.28,-26.8237,0.0:98:100:98:0,97:4038,291,0:1:.:1:.:.:.:-0.0183821	1/1:126.0605:296:0:0:294:11286:-1015.12,-79.6088,0.0:293:100:293:0,292:12499,864,0:.:1:1:.:.:.:-0.631719
chr16	2496760	.	T	C	13750.7	REJECT	NS=2;DP=360;DPB=414.0;AC=4;AN=4;AF=1.0;RO=0;AO=414;PRO=0.0;PAO=0.0;QR=0;QA=15983;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=206;SAR=208;SRP=0.0;SAP=3.03128;AB=0.0;ABP=0.0;RUN=1;RPP=14.1089;RPPR=0.0;RPL=230.0;RPR=184.0;EPP=6.55599;EPPR=0.0;DPRA=0.0;ODDS=70.4749;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995169;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9637;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.825;SOR=0.7095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:106:4107:-369.651,-28.7318,0.0:106:100:106:0,106:4283,318,0:1:.:1:.:.:.:-0.0183821	1/1:129.501:307:0:0:308:11876:-1067.8,-83.0438,0.0:307:100:307:0,306:13212,912,0:.:1:1:.:.:.:-0.631719
chr16	2607730	.	C	T	1036.71	REJECT	NS=2;DP=196;DPB=196.0;AC=2;AN=4;AF=0.5;RO=119;AO=77;PRO=0.0;PAO=0.0;QR=4396;QA=2797;PQR=0.0;PQA=0.0;SRF=118;SRR=1;SAF=77;SAR=0;SRP=252.803;SAP=170.214;AB=0.392857;ABP=22.5536;RUN=1;RPP=5.29458;RPPR=5.21827;RPL=34.0;RPR=43.0;EPP=5.29458;EPPR=6.09416;DPRA=0.0;ODDS=86.0986;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=27.9091;MQMR=26.9664;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=334;BaseQRankSum=-1.9475;Dels=0.0;FS=1.694;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.5;MQ=21.59;MQRankSum=0.136;QD=8.245;ReadPosRankSum=-1.4025;SOR=1.108;ClippingRankSum=0.817	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.9985:50:26:973:26:941:-49.5751,0.0,-43.4183:26:52:50:22,26:707,0,526:1:.:1:.:.:.:-0.0183821	0/1:121.9985:311:93:3423:51:1856:-82.1136,0.0,-176.687:85:30:311:359,119:1152,0,2317:.:1:1:.:.:.:-0.631719
chr16	2642822	.	C	T	1960.42	REJECT	NS=2;DP=413;DPB=466.0;AC=2;AN=4;AF=0.5;RO=359;AO=106;PRO=0.0;PAO=0.0;QR=13715;QA=3932;PQR=0.0;PQA=0.0;SRF=196;SRR=163;SAF=58;SAR=48;SRP=9.5973;SAP=5.05886;AB=0.227468;ABP=303.643;RUN=1;RPP=5.05886;RPPR=4.37125;RPL=48.0;RPR=58.0;EPP=21.4473;EPPR=8.82307;DPRA=0.0;ODDS=179.179;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991643;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4575;Dels=0.0;FS=1.87;HaplotypeScore=5.87;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4715;QD=9.97;ReadPosRankSum=-0.129;SOR=0.542;ClippingRankSum=0.914	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.519:103:52:1953:53:1953:-147.352,0.0,-147.371:51:50:103:51,50:1749,0,1783:1:.:1:.:.:.:-0.00057019	0/1:118.519:360:307:11762:53:1979:-80.5495,0.0,-960.382:53:15:360:307,53:1134,0,12030:.:1:1:.:.:.:-0.0160207
chr16	2750455	.	A	G	877.782	REJECT	NS=1;DP=87;DPB=87.0;AC=1;AN=4;AF=0.5;RO=51;AO=36;PRO=0.0;PAO=0.0;QR=1751;QA=1290;PQR=0.0;PQA=0.0;SRF=32;SRR=19;SAF=19;SAR=17;SRP=10.206;SAP=3.25157;AB=0.413793;ABP=8.62618;RUN=1;RPP=6.8707;RPPR=6.45911;RPL=14.0;RPR=22.0;EPP=5.18177;EPPR=3.05288;DPRA=0.0;ODDS=202.117;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.938;FS=4.475;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.371;QD=12.27;ReadPosRankSum=-1.28;SOR=0.321;ClippingRankSum=-1.427	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.606:83:51:1751:36:1290:-93.03,0.0,-134.117:34:41:83:47,33:1022,0,1514:1:.:1:.:.:.:-0.00057019	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0160207
chr16	2750618	.	C	G	929.976	REJECT	NS=2;DP=244;DPB=283.0;AC=2;AN=4;AF=0.5;RO=230;AO=52;PRO=0.0;PAO=0.0;QR=8837;QA=1974;PQR=0.0;PQA=0.0;SRF=137;SRR=93;SAF=33;SAR=19;SRP=21.2884;SAP=11.1951;AB=0.183746;ABP=248.862;RUN=1;RPP=23.2217;RPPR=82.9205;RPL=15.0;RPR=37.0;EPP=5.68288;EPPR=4.86077;DPRA=0.0;ODDS=16.1139;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986957;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1745;Dels=0.0;FS=2.3285;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.147;QD=8.15;ReadPosRankSum=-0.065;SOR=0.967;ClippingRankSum=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:43:1657:32:1251:-92.3123,0.0,-128.862:32:43:74:42,32:1181,0,1550:1:.:1:.:.:.:-0.00057019	0/1:84.49095:207:187:7180:20:723:-8.98057,0.0,-589.866:20:10:206:185,20:177,0,7318:.:1:1:.:.:.:-0.0160207
chr16	2750639	.	T	TGA	1020.54	REJECT	NS=2;DP=371;DPB=411.0;AC=2;AN=4;AF=0.5;RO=307;AO=63;PRO=8.0;PAO=8.0;QR=11626;QA=2327;PQR=208.0;PQA=208.0;SRF=179;SRR=128;SAF=42;SAR=21;SRP=21.4077;SAP=18.2106;AB=0.169811;ABP=354.338;RUN=1;RPP=3.32051;RPPR=3.01737;RPL=30.0;RPR=33.0;EPP=5.80219;EPPR=4.60177;DPRA=0.0;ODDS=19.3472;GTI=0;TYPE=ins;CIGAR=1M2I3M;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986971;technology.ILLUMINA=1.0;END=2750639;HOMLEN=3;HOMSEQ=GAG;SVLEN=2;SVTYPE=INS;BaseQRankSum=1.746;FS=8.666;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.782;QD=15.83;ReadPosRankSum=0.711;SOR=1.537;ClippingRankSum=1.24	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:48,50:39:42:92:118.5775:91:54:2048:37:1384:-99.9195,0.0,-159.727:1494,0,2077:1:.:1:1:.:.:-0.00057019	0/1:131,44:35:17:227:84.0239:280:253:9578:26:943:-9.26392,0.0,-786.036:.:.:.:1:1:.:.:-0.0160207
chr16	2750696	.	G	A	3092.13	PASS	SOMATIC;NS=2;DP=419;DPB=419.0;AC=1;AN=3;AF=0.25;RO=301;AO=118;PRO=0.0;PAO=0.0;QR=11415;QA=4533;PQR=0.0;PQA=0.0;SRF=133;SRR=168;SAF=53;SAR=65;SRP=11.8477;SAP=5.66023;AB=0.354545;ABP=63.6536;RUN=1;RPP=7.72129;RPPR=3.01751;RPL=51.0;RPR=67.0;EPP=3.08391;EPPR=52.7089;DPRA=0.0;ODDS=49.1579;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993355;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.501;Dels=0.0;FS=0.0;HaplotypeScore=6.8127;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.434;QD=12.22;ReadPosRankSum=0.378;SOR=0.691	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.493:86:88:3358:1:35:0.0,-20.9517,-299.125:1:1:86:83,1:.:0.012:0:.:.:.:0:.:.:0:-0.00057019	0/1:120.2465:329:213:8057:117:4498:-315.26,0.0,-635.305:117:36:329:199,113:38.0:0.37:2:4048,0,7948:.:1:1:.:.:1:-0.0160207
chr16	2752154	.	A	G	1407.55	REJECT	NS=1;DP=94;DPB=94.0;AC=1;AN=4;AF=0.5;RO=44;AO=50;PRO=0.0;PAO=0.0;QR=1663;QA=1929;PQR=0.0;PQA=0.0;SRF=28;SRR=16;SAF=30;SAR=20;SRP=10.1169;SAP=7.35324;AB=0.531915;ABP=3.84193;RUN=1;RPP=3.18402;RPPR=4.78696;RPL=24.0;RPR=26.0;EPP=24.0302;EPPR=3.20771;DPRA=0.0;ODDS=272.982;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.148;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.894;QD=18.23;ReadPosRankSum=-0.298;SOR=0.703;ClippingRankSum=0.727	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:44:1663:50:1929:-148.18,0.0,-124.218:48:52:92:44,47:1705,0,1577:1:.:1:.:.:.:-0.00057019	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0160207
chr16	2753180	.	T	C	2334.55	REJECT	NS=2;DP=355;DPB=410.0;AC=2;AN=4;AF=0.5;RO=302;AO=107;PRO=0.0;PAO=0.0;QR=11633;QA=4158;PQR=0.0;PQA=0.0;SRF=127;SRR=175;SAF=50;SAR=57;SRP=19.5768;SAP=4.00471;AB=0.260976;ABP=206.472;RUN=1;RPP=6.44001;RPPR=5.33996;RPL=47.0;RPR=60.0;EPP=20.0777;EPPR=19.5768;DPRA=0.0;ODDS=156.023;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=0.993377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.7845;Dels=0.0;FS=1.039;HaplotypeScore=4.846;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.208;QD=11.77;ReadPosRankSum=-1.2525;SOR=0.5865;ClippingRankSum=-0.634	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:44:1709:64:2475:-193.49,0.0,-124.539:62:59:106:43,61:2142,0,1444:1:.:1:.:.:.:-0.00057019	0/1:129.501:301:258:9924:43:1683:-69.8358,0.0,-811.101:43:14:300:256,43:994,0,10130:.:1:1:.:.:.:-0.0160207
chr16	3777836	.	T	C	7592.05	REJECT	NS=2;DP=532;DPB=615.0;AC=2;AN=4;AF=0.5;RO=334;AO=281;PRO=0.0;PAO=0.0;QR=12636;QA=10660;PQR=0.0;PQA=0.0;SRF=170;SRR=164;SAF=145;SAR=136;SRP=3.24435;SAP=3.63624;AB=0.456911;ABP=12.9285;RUN=1;RPP=11.4257;RPPR=9.66775;RPL=124.0;RPR=157.0;EPP=3.07985;EPPR=3.42639;DPRA=0.0;ODDS=489.147;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992883;PAIREDR=0.991018;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5965;Dels=0.0;FS=0.846;HaplotypeScore=10.6554;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.21;QD=16.135;ReadPosRankSum=0.852;SOR=0.6675;ClippingRankSum=-1.645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:158:85:3119:76:2856:-213.406,0.0,-237.427:75:47:158:82,74:2536,0,2784:1:.:1:.:.:.:-0.00057019	0/1:129.501:452:249:9517:205:7804:-578.906,0.0,-733.391:204:45:452:246,204:7361,0,9198:.:1:1:.:.:.:-0.0160207
chr16	3808052	.	T	TA	429.677	REJECT	NS=2;DP=210;DPB=238.444;AC=2;AN=3;AF=0.25;RO=139;AO=29;PRO=27.1667;PAO=19.1667;QR=5199;QA=977;PQR=985.833;PQA=691.833;SRF=16;SRR=123;SAF=5;SAR=24;SRP=181.868;SAP=30.0414;AB=0.138095;ABP=241.914;RUN=1;RPP=3.68421;RPPR=4.27569;RPL=13.0;RPR=16.0;EPP=15.6647;EPPR=11.2744;DPRA=0.0;ODDS=6.98576;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:87.1207:65:42:1582:9:303:-20.1987,-7.82433,-148.555:9:15:62:.:.:1:.:.:.:-0.00057019	0/1:30.3428:145:97:3617:20:674:-30.8329,0.0,-309.02:20:15:135:.:.:1:.:.:.:-0.0160207
chr16	3808052	.	TA	T	429.677	REJECT	NS=2;DP=210;DPB=238.444;AC=2;AN=3;AF=0.25;RO=139;AO=29;PRO=27.1667;PAO=15.6667;QR=5199;QA=1070;PQR=985.833;PQA=550.333;SRF=16;SRR=123;SAF=8;SAR=21;SRP=181.868;SAP=15.6647;AB=0.138095;ABP=241.914;RUN=1;RPP=15.6647;RPPR=4.27569;RPL=21.0;RPR=8.0;EPP=3.68421;EPPR=11.2744;DPRA=0.0;ODDS=6.98576;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.1207:65:42:1582:11:408:-20.1987,0.0,-153.314:11:18:62:.:.:1:.:.:.:-0.00057019	./1:30.3428:145:97:3617:18:662:-30.8329,-3.70454,-345.44:18:13:135:.:.:1:.:.:.:-0.0160207
chr16	6000642	.	G	C	1654.96	REJECT	NS=2;DP=375;DPB=425.0;AC=2;AN=4;AF=0.5;RO=339;AO=86;PRO=0.0;PAO=0.0;QR=12967;QA=3267;PQR=0.0;PQA=0.0;SRF=179;SRR=160;SAF=43;SAR=43;SRP=5.32269;SAP=3.0103;AB=0.202353;ABP=330.054;RUN=1;RPP=17.5541;RPPR=15.9815;RPL=55.0;RPR=31.0;EPP=3.1113;EPPR=7.01375;DPRA=0.0;ODDS=99.0331;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988372;PAIREDR=0.988201;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5905;Dels=0.0;FS=3.957;HaplotypeScore=5.8658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6745;QD=9.285;ReadPosRankSum=-0.3035;SOR=0.7495;ClippingRankSum=-0.374	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3565:95:50:1936:47:1784:-134.294,0.0,-147.988:46:48:95:48,46:1615,0,1673:1:.:1:.:.:.:-0.00057019	0/1:118.3565:327:289:11031:39:1483:-44.9884,0.0,-903.34:39:12:327:287,39:694,0,11219:.:1:1:.:.:.:-0.0160207
chr16	8988386	.	C	CG	4285.59	REJECT	NS=2;DP=203;DPB=263.267;AC=2;AN=2;AF=0.5;RO=24;AO=67;PRO=25.8333;PAO=25.8333;QR=899;QA=2399;PQR=862.833;PQA=862.833;SRF=12;SRR=12;SAF=46;SAR=21;SRP=3.0103;SAP=23.2666;AB=0.29386;ABP=87.1644;RUN=1;RPP=20.1552;RPPR=39.2015;RPL=22.0;RPR=45.0;EPP=10.3026;EPPR=4.45795;DPRA=0.0;ODDS=68.0639;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.677;FS=3.4765;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=-0.9225;QD=19.75;RPA=9;RU=G;ReadPosRankSum=1.102;SOR=1.2775;STR;ClippingRankSum=0.359	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:47:7:263:18:615:-85.8119,-37.1924,-54.1365:19:41:46:6,20:854,448,655:1:.:1:.:.:.:-0.00057019	./1:129.501:179:17:636:49:1784:-392.558,-249.933,-289.323:54:31:172:17,59:3929,2746,3785:.:1:1:.:.:.:-0.0160207
chr16	8988386	.	CG	C	4285.59	REJECT	NS=2;DP=203;DPB=263.267;AC=2;AN=2;AF=0.5;RO=24;AO=121;PRO=25.8333;PAO=24.3333;QR=899;QA=4400;PQR=862.833;PQA=806.333;SRF=12;SRR=12;SAF=74;SAR=47;SRP=3.0103;SAP=16.093;AB=0.530702;ABP=4.877;RUN=1;RPP=9.48883;RPPR=39.2015;RPL=51.0;RPR=70.0;EPP=20.2565;EPPR=4.45795;DPRA=0.0;ODDS=68.0639;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.4959;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.677;FS=3.4765;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=-0.9225;QD=19.75;RPA=9;RU=G;ReadPosRankSum=1.102;SOR=1.2775;STR;ClippingRankSum=0.359	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:47:7:263:21:718:-85.8119,-28.7244,-45.2281:20:44:46:6,20:854,401,632:1:.:1:.:.:.:-0.00057019	./1:129.501:179:17:636:100:3682:-392.558,-94.6111,-138.907:101:58:172:17,102:3929,1200,1834:.:1:1:.:.:.:-0.0160207
chr16	8995927	.	G	A	3706.52	REJECT	NS=2;DP=279;DPB=314.0;AC=2;AN=4;AF=0.5;RO=178;AO=136;PRO=0.0;PAO=0.0;QR=6817;QA=5291;PQR=0.0;PQA=0.0;SRF=111;SRR=67;SAF=88;SAR=48;SRP=26.6281;SAP=28.557;AB=0.433121;ABP=15.2093;RUN=1;RPP=17.3803;RPPR=10.0371;RPL=53.0;RPR=83.0;EPP=4.60697;EPPR=33.5085;DPRA=0.0;ODDS=230.007;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992647;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0535;Dels=0.0;FS=1.6855;HaplotypeScore=8.8867;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9065;QD=16.31;ReadPosRankSum=1.113;SOR=0.945;ClippingRankSum=0.257	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5475:68:35:1333:34:1344:-102.324,0.0,-101.33:34:50:68:33,34:1224,0,1156:1:.:1:.:.:.:-0.00057019	0/1:119.5475:244:143:5484:102:3947:-288.671,0.0,-426.955:101:41:244:143,101:3631,0,5402:.:1:1:.:.:.:-0.0160207
chr16	9004564	.	C	A	11291.0	REJECT	NS=2;DP=307;DPB=354.0;AC=4;AN=4;AF=1.0;RO=1;AO=353;PRO=0.0;PAO=0.0;QR=14;QA=13300;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=196;SAR=157;SRP=5.18177;SAP=12.3667;AB=0.0;ABP=0.0;RUN=1;RPP=256.507;RPPR=5.18177;RPL=75.0;RPR=278.0;EPP=7.49473;EPPR=5.18177;DPRA=0.0;ODDS=60.8682;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994334;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.694;Dels=0.0;FS=1.8965;HaplotypeScore=7.7654;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.019;QD=33.4;ReadPosRankSum=0.476;SOR=0.852;ClippingRankSum=-1.504	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.009:91:1:14:91:3406:-305.362,-23.6566,0.0:90:99:91:1,90:3597,262,0:1:.:1:.:.:.:-0.00057019	1/1:125.009:261:0:0:262:9894:-889.943,-70.9118,0.0:261:100:261:0,261:10972,765,0:.:1:1:.:.:.:-0.0160207
chr16	9010446	.	A	AC	8724.28	REJECT	NS=2;DP=249;DPB=381.0;AC=4;AN=4;AF=1.0;RO=0;AO=281;PRO=7.5;PAO=7.5;QR=0;QA=9930;PQR=264.5;PQA=264.5;SRF=0;SRR=0;SAF=78;SAR=203;SRP=0.0;SAP=123.755;AB=0.0;ABP=0.0;RUN=1;RPP=48.8276;RPPR=0.0;RPL=179.0;RPR=102.0;EPP=4.74902;EPPR=0.0;DPRA=0.0;ODDS=53.5706;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0356;MQMR=0.0;PAIRED=0.989324;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=9010446;HOMLEN=0;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.19;QD=33.49;SOR=1.9915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.121:80:0:0:79:2802:-252.313,-21.3904,0.0:79:100:82:16,80:3303,247,0:1:.:1:1:.:.:-0.00057019	1/1:122.121:209:0:0:202:7128:-641.341,-54.6359,0.0:202:100:215:55,206:9738,647,0:.:1:1:1:.:.:-0.0160207
chr16	9017061	.	T	A	179.395	REJECT	NS=2;DP=6;DPB=6.0;AC=4;AN=4;AF=1.0;RO=0;AO=6;PRO=0.0;PAO=0.0;QR=0;QA=225;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=2;SAR=4;SRP=0.0;SAP=4.45795;AB=0.0;ABP=0.0;RUN=1;RPP=16.0391;RPPR=0.0;RPL=0.0;RPR=6.0;EPP=4.45795;EPPR=0.0;DPRA=0.0;ODDS=5.01053;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.92;SOR=1.022	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:21.7905:1:0:0:1:40:-3.99559,-0.300986,0.0:1:100:1:.:.:.:.:1:.:.:.:-0.00057019	1/1:23.812:5:0:0:5:185:-17.0072,-1.38422,0.0:5:100:5:0,5:209,15,0:.:1:1:.:.:.:-0.0160207
chr16	9017061	.	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	2964.73	PASS	DP=31;AC=4;AN=4;AF=1.0;END=9017061;HOMLEN=2;HOMSEQ=AC;SVLEN=35;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.43;SOR=1.765	GT:AD:GMIMUT:GMIMAF:GMICOV:DP:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:0,41:41:99:42:30:99.0:3002,200,0:1:.:.:1:.:.:-0.00057019	1/1:5,167:167:97:172:.:.:.:.:.:.:1:.:.:-0.0160207
chr16	9030444	.	C	G	13402.25	REJECT	NS=2;DP=356;DPB=402.0;AC=4;AN=4;AF=1.0;RO=0;AO=402;PRO=0.0;PAO=0.0;QR=0;QA=15241;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=193;SAR=209;SRP=0.0;SAP=4.39313;AB=0.0;ABP=0.0;RUN=1;RPP=14.4402;RPPR=0.0;RPL=224.0;RPR=178.0;EPP=57.027;EPPR=0.0;DPRA=0.0;ODDS=60.7554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992537;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.495;SOR=0.819	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.4395:89:0:0:92:3381:-303.952,-24.5107,0.0:89:100:89:0,86:3475,258,0:1:.:1:.:.:.:-0.00057019	1/1:126.4395:310:0:0:310:11860:-1066.74,-83.9455,0.0:310:100:310:0,310:13235,918,0:.:1:1:.:.:.:-0.0160207
chr16	9916204	.	C	G	8972.685000000001	REJECT	NS=2;DP=365;DPB=425.0;AC=3;AN=4;AF=0.75;RO=104;AO=321;PRO=0.0;PAO=0.0;QR=3971;QA=12284;PQR=0.0;PQA=0.0;SRF=51;SRR=53;SAF=170;SAR=151;SRP=3.09382;SAP=5.45236;AB=0.661238;ABP=72.3347;RUN=1;RPP=3.34177;RPPR=15.0369;RPL=164.0;RPR=157.0;EPP=3.17942;EPPR=3.09382;DPRA=0.0;ODDS=74.5627;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993769;PAIREDR=0.971154;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.736;Dels=0.0;FS=2.016;HaplotypeScore=6.7877;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.032;QD=26.385;ReadPosRankSum=-0.195;SOR=0.797	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:117:0:0:118:4492:-404.25,-31.9562,0.0:117:100:117:0,116:4663,348,0:1:.:1:.:.:.:-0.00057019	0/1:129.501:306:104:3971:203:7792:-617.732,0.0,-274.025:203:66:306:102,203:7816,0,3412:.:1:1:.:.:.:-0.0160207
chr16	9943666	.	C	T	8537.93	REJECT	NS=2;DP=374;DPB=432.0;AC=3;AN=4;AF=0.75;RO=116;AO=316;PRO=0.0;PAO=0.0;QR=4384;QA=11791;PQR=0.0;PQA=0.0;SRF=63;SRR=53;SAF=161;SAR=155;SRP=4.88226;SAP=3.25768;AB=0.632911;ABP=51.4974;RUN=1;RPP=10.047;RPPR=7.80251;RPL=142.0;RPR=174.0;EPP=3.69747;EPPR=12.0706;DPRA=0.0;ODDS=73.2417;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990506;PAIREDR=0.991379;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.156;Dels=0.0;FS=1.601;HaplotypeScore=2.9317;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.902;QD=29.345;ReadPosRankSum=0.157;SOR=0.659	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4314:-388.232,-31.3825,0.0:114:100:114:0,113:4536,338,0:1:.:1:.:.:.:-0.00057019	0/1:129.501:316:116:4384:200:7477:-587.393,0.0,-309.159:200:63:316:116,200:7415,0,3963:.:1:1:.:.:.:-0.0160207
chr16	10528356	.	C	G	3658.79	REJECT	NS=2;DP=233;DPB=269.0;AC=2;AN=4;AF=0.5;RO=135;AO=134;PRO=0.0;PAO=0.0;QR=5118;QA=5087;PQR=0.0;PQA=0.0;SRF=95;SRR=40;SAF=94;SAR=40;SRP=51.6674;SAP=50.2641;AB=0.498141;ABP=3.01837;RUN=1;RPP=73.5994;RPPR=55.2704;RPL=34.0;RPR=100.0;EPP=4.6308;EPPR=3.15506;DPRA=0.0;ODDS=208.027;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992537;PAIREDR=0.985185;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.629;Dels=0.0;FS=0.2835;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3305;QD=17.125;ReadPosRankSum=0.145;SOR=0.6905;ClippingRankSum=1.263	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:127.768:70:37:1396:34:1268:-94.9443,0.0,-106.48:34:48:70:36,34:1130,0,1187:1:.:1:.:.:.:-0.00057019	0/1:127.768:197:98:3722:100:3819:-290.326,0.0,-281.216:100:51:197:97,100:3674,0,3536:.:1:1:.:.:.:-0.0160207
chr16	11348706	.	C	G	5542.54	REJECT	NS=2;DP=369;DPB=412.0;AC=2;AN=4;AF=0.5;RO=214;AO=197;PRO=0.0;PAO=0.0;QR=8096;QA=7552;PQR=0.0;PQA=0.0;SRF=134;SRR=80;SAF=129;SAR=68;SRP=32.5991;SAP=44.0258;AB=0.478155;ABP=4.71796;RUN=1;RPP=3.55041;RPPR=20.9097;RPL=95.0;RPR=102.0;EPP=38.8231;EPPR=9.86972;DPRA=0.0;ODDS=257.092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985981;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1875;Dels=0.0;FS=3.1665;HaplotypeScore=5.8346;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.5795;QD=17.405;ReadPosRankSum=0.8405;SOR=0.72;ClippingRankSum=1.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:46:1745:39:1504:-112.379,0.0,-134.055:39:47:83:42,39:1407,0,1370:1:.:1:.:.:.:-0.00057019	0/1:129.501:327:168:6351:158:6048:-455.729,0.0,-482.957:158:48:326:168,158:5846,0,6085:.:1:1:.:.:.:-0.0160207
chr16	19509305	.	C	G	7407.47	REJECT	NS=2;DP=279;DPB=320.0;AC=2;AN=4;AF=0.5;RO=75;AO=245;PRO=0.0;PAO=0.0;QR=2866;QA=9377;PQR=0.0;PQA=0.0;SRF=13;SRR=62;SAF=96;SAR=149;SRP=72.5264;SAP=27.9069;AB=0.765625;ABP=199.121;RUN=1;RPP=76.4061;RPPR=13.4623;RPL=168.0;RPR=77.0;EPP=3.23188;EPPR=3.03925;DPRA=0.0;ODDS=117.858;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3895;Dels=0.0;FS=24.783;HaplotypeScore=12.6521;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.496;QD=25.03;ReadPosRankSum=-0.4175;SOR=0.1265;ClippingRankSum=0.942	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.3285:81:39:1504:43:1652:-126.5,0.0,-113.188:43:52:81:38,43:1371,0,1371:1:.:1:.:.:.:-0.00057019	0/1:120.3285:238:36:1362:202:7725:-630.436,0.0,-58.0724:202:85:238:36,202:7996,0,820:.:1:1:.:.:.:-0.0160207
chr16	21008081	.	A	G	1243.925	REJECT	NS=2;DP=226;DPB=257.0;AC=2;AN=4;AF=0.5;RO=197;AO=60;PRO=0.0;PAO=0.0;QR=7558;QA=2279;PQR=0.0;PQA=0.0;SRF=107;SRR=90;SAF=40;SAR=20;SRP=6.19586;SAP=17.4868;AB=0.233463;ABP=161.595;RUN=1;RPP=20.5268;RPPR=90.3211;RPL=19.0;RPR=41.0;EPP=6.62942;EPPR=19.7758;DPRA=0.0;ODDS=78.7762;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8985;PAIRED=1.0;PAIREDR=0.994924;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.147;Dels=0.0;FS=6.1295;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=59.955;MQRankSum=-0.4945;QD=11.31;ReadPosRankSum=1.1455;SOR=1.2185;ClippingRankSum=3.027	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.858:61:27:1046:34:1283:-99.0237,0.0,-77.6825:34:56:61:27,34:1249,0,992:1:.:1:.:.:.:-0.00057019	0/1:119.858:196:170:6512:26:996:-36.5228,0.0,-532.657:26:13:196:170,26:539,0,6680:.:1:1:.:.:.:-0.0160207
chr16	23517300	.	C	T	1422.855	REJECT	NS=2;DP=362;DPB=411.0;AC=2;AN=4;AF=0.5;RO=332;AO=79;PRO=0.0;PAO=0.0;QR=12619;QA=3079;PQR=0.0;PQA=0.0;SRF=155;SRR=177;SAF=34;SAR=45;SRP=6.17594;SAP=6.33623;AB=0.192214;ABP=341.195;RUN=1;RPP=3.03779;RPPR=4.29225;RPL=39.0;RPR=40.0;EPP=3.03779;EPPR=4.68469;DPRA=0.0;ODDS=98.6873;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974684;PAIREDR=0.990964;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6815;Dels=0.0;FS=2.9525;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.197;QD=7.68;ReadPosRankSum=-0.099;SOR=0.828;ClippingRankSum=-0.205	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8235:94:55:2049:42:1647:-121.969,0.0,-158.159:40:42:94:53,38:1274,0,1905:1:.:1:.:.:.:-0.00057019	0/1:118.8235:313:277:10570:37:1432:-43.8054,0.0,-865.662:37:12:313:276,37:690,0,10762:.:1:1:.:.:.:-0.0160207
chr16	23518214	.	T	TC	11856.2	REJECT	NS=2;DP=353;DPB=464.182;AC=4;AN=4;AF=1.0;RO=1;AO=373;PRO=28.0;PAO=54.0;QR=39;QA=13529;PQR=919.5;PQA=1829.5;SRF=1;SRR=0;SAF=198;SAR=175;SRP=5.18177;SAP=6.08995;AB=0.0;ABP=0.0;RUN=1;RPP=4.32017;RPPR=5.18177;RPL=194.0;RPR=179.0;EPP=12.7965;EPPR=5.18177;DPRA=0.0;ODDS=57.4381;GTI=0;TYPE=ins;CIGAR=1M1I10M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991957;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.613;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.52;MQRankSum=-0.973;QD=30.895;RPA=5,6;RU=C;ReadPosRankSum=1.194;SOR=0.759;STR;ClippingRankSum=0.973	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.3445:96:1:39:89:3221:-302.035,-22.1669,0.0:93:98:95:2,98:3052,256,0:1:.:1:.:.:.:-0.00057019	1/1:119.3445:306:0:0:284:10308:-993.3,-82.4075,0.0:294:100:294:0,305:10843,918,0:.:1:1:.:.:.:-0.0160207
chr16	23750116	.	G	A	9602.935000000001	REJECT	NS=2;DP=391;DPB=443.0;AC=3;AN=4;AF=0.75;RO=112;AO=331;PRO=0.0;PAO=0.0;QR=4324;QA=12666;PQR=0.0;PQA=0.0;SRF=60;SRR=52;SAF=180;SAR=151;SRP=4.25114;SAP=8.52755;AB=0.674487;ABP=93.1869;RUN=1;RPP=11.0467;RPPR=4.25114;RPL=148.0;RPR=183.0;EPP=39.9122;EPPR=5.80219;DPRA=0.0;ODDS=56.3246;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987915;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5145;Dels=0.0;FS=2.828;HaplotypeScore=11.6952;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.4155;QD=28.285;ReadPosRankSum=0.1185;SOR=0.606;ClippingRankSum=-0.6	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.6315:101:1:40:101:3761:-334.934,-24.0248,0.0:100:99:101:1,100:3882,258,0:1:.:1:.:.:.:-0.00057019	0/1:121.6315:340:111:4284:230:8905:-708.583,0.0,-292.925:229:67:340:111,228:8909,0,3759:.:1:1:.:.:.:-0.0160207
chr16	27003637	.	C	T	1916.405	REJECT	NS=2;DP=375;DPB=425.0;AC=2;AN=4;AF=0.5;RO=329;AO=96;PRO=0.0;PAO=0.0;QR=12643;QA=3710;PQR=0.0;PQA=0.0;SRF=148;SRR=181;SAF=43;SAR=53;SRP=10.1979;SAP=5.27225;AB=0.225882;ABP=280.392;RUN=1;RPP=16.0391;RPPR=11.0956;RPL=60.0;RPR=36.0;EPP=13.9581;EPPR=12.046;DPRA=0.0;ODDS=137.264;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993921;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0345;Dels=0.0;FS=2.3555;HaplotypeScore=6.7902;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1215;QD=10.445;ReadPosRankSum=0.7325;SOR=0.7545;ClippingRankSum=-0.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.365:96:45:1667:53:2038:-156.901,0.0,-123.501:52:54:96:44,51:1756,0,1566:1:.:1:.:.:.:-0.00057019	0/1:117.365:326:284:10976:43:1672:-61.7953,0.0,-898.648:43:13:326:282,43:905,0,11248:.:1:1:.:.:.:-0.0160207
chr16	27003656	.	A	G	12577.349999999999	REJECT	NS=2;DP=338;DPB=380.0;AC=4;AN=4;AF=1.0;RO=0;AO=380;PRO=0.0;PAO=0.0;QR=0;QA=14312;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=151;SAR=229;SRP=0.0;SAP=37.7767;AB=0.0;ABP=0.0;RUN=1;RPP=53.5027;RPPR=0.0;RPL=237.0;RPR=143.0;EPP=14.0734;EPPR=0.0;DPRA=0.0;ODDS=55.3922;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994737;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.585;SOR=1.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:81:0:0:82:3041:-273.751,-22.1815,0.0:81:100:81:0,81:3136,242,0:1:.:1:.:.:.:-0.00057019	1/1:129.501:297:0:0:298:11271:-1013.79,-80.6639,0.0:297:100:297:0,296:12446,867,0:.:1:1:.:.:.:-0.0160207
chr16	31191482	.	A	G	3012.14	REJECT	NS=1;DP=89;DPB=89.0;AC=2;AN=4;AF=1.0;RO=0;AO=89;PRO=0.0;PAO=0.0;QR=0;QA=3434;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=56;SAR=33;SRP=0.0;SAP=15.9171;AB=0.0;ABP=0.0;RUN=1;RPP=29.5803;RPPR=0.0;RPL=28.0;RPR=61.0;EPP=10.0615;EPPR=0.0;DPRA=0.0;ODDS=60.1186;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.82;SOR=1.338	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:89:3434:-309.117,-24.1092,0.0:89:100:89:0,89:3645,267,0:1:.:1:.:.:.:-0.00057019	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0160207
chr16	31193942	.	C	A	12236.3	REJECT	NS=2;DP=456;DPB=517.0;AC=2;AN=4;AF=0.5;RO=119;AO=398;PRO=0.0;PAO=0.0;QR=4470;QA=15255;PQR=0.0;PQA=0.0;SRF=51;SRR=68;SAF=188;SAR=210;SRP=8.28388;SAP=5.65098;AB=0.769826;ABP=329.953;RUN=1;RPP=11.7398;RPPR=5.21827;RPL=179.0;RPR=219.0;EPP=11.7398;EPPR=6.09416;DPRA=0.0;ODDS=177.926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.995;MQMR=60.0;PAIRED=0.997487;PAIREDR=0.983193;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.548;Dels=0.0;FS=2.0705;HaplotypeScore=6.8435;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.532;QD=25.045;ReadPosRankSum=0.225;SOR=0.5195;ClippingRankSum=0.344	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.339:121:64:2407:58:2181:-163.25,0.0,-183.56:58:48:121:62,58:1987,0,2084:1:.:1:.:.:.:-0.00057019	0/1:118.339:395:55:2063:340:13074:-1068.88,0.0,-78.5874:340:86:395:55,340:13452,0,1131:.:1:1:.:.:.:-0.0160207
chr16	31195279	.	C	T	1782.82	REJECT	NS=2;DP=370;DPB=423.0;AC=2;AN=4;AF=0.5;RO=334;AO=88;PRO=0.0;PAO=0.0;QR=12868;QA=3317;PQR=0.0;PQA=0.0;SRF=163;SRR=171;SAF=41;SAR=47;SRP=3.42639;SAP=3.89863;AB=0.208038;ABP=316.2;RUN=1;RPP=5.47788;RPPR=3.03631;RPL=39.0;RPR=49.0;EPP=3.40511;EPPR=29.6401;DPRA=0.0;ODDS=73.6773;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977273;PAIREDR=0.994012;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0435;Dels=0.0;FS=0.712;HaplotypeScore=11.7919;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.347;QD=9.58;ReadPosRankSum=0.885;SOR=0.744;ClippingRankSum=0.874	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4255:102:50:1929:54:1997:-151.581,0.0,-145.455:53:52:102:48,53:1820,0,1728:1:.:1:.:.:.:-0.00057019	0/1:118.4255:318:284:10939:34:1320:-32.5879,0.0,-897.774:34:11:317:283,34:534,0,11262:.:1:1:.:.:.:-0.0160207
chr16	31195759	.	CT	C	45.74	PASS	DP=18;AC=1;AN=4;AF=0.5;BaseQRankSum=0.736;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.07;MQRankSum=-0.736;QD=2.54;ReadPosRankSum=-0.736;SOR=0.941;ClippingRankSum=0.736	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3,5:8:33.0:80,0,33:5:63:8:1:.:.:.:.:.:-1.32166	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0160207
chr16	31195965	.	C	G	714.591	REJECT	NS=2;DP=142;DPB=167.0;AC=2;AN=4;AF=0.5;RO=128;AO=39;PRO=0.0;PAO=0.0;QR=4840;QA=1468;PQR=0.0;PQA=0.0;SRF=123;SRR=5;SAF=38;SAR=1;SRP=239.226;SAP=79.2345;AB=0.233533;ABP=106.006;RUN=1;RPP=4.40227;RPPR=35.8538;RPL=17.0;RPR=22.0;EPP=5.73856;EPPR=38.9075;DPRA=0.0;ODDS=32.9485;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.9744;MQMR=52.9766;PAIRED=1.0;PAIREDR=0.992188;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.486;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=54.705;MQRankSum=1.6395;QD=9.875;ReadPosRankSum=0.0285;SOR=0.9035;ClippingRankSum=-1.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.314:48:25:923:24:909:-68.466,0.0,-66.2869:24:49:48:24,24:880,0,832:1:.:1:.:.:.:-1.32166	0/1:118.5075:118:103:3917:15:559:-17.6393,0.0,-317.524:15:13:118:103,15:264,0,4021:.:1:1:.:.:.:-0.0160207
chr16	31196105	.	T	C	9328.25	REJECT	NS=2;DP=346;DPB=404.0;AC=2;AN=4;AF=0.5;RO=99;AO=305;PRO=0.0;PAO=0.0;QR=3720;QA=11683;PQR=0.0;PQA=0.0;SRF=51;SRR=48;SAF=175;SAR=130;SRP=3.20771;SAP=17.4275;AB=0.75495;ABP=231.101;RUN=1;RPP=7.46004;RPPR=16.7191;RPL=140.0;RPR=165.0;EPP=8.20047;EPPR=3.55865;DPRA=0.0;ODDS=158.303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0328;MQMR=60.0;PAIRED=0.993443;PAIREDR=0.969697;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.833;Dels=0.0;FS=2.6295;HaplotypeScore=4.8991;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.402;QD=25.0;ReadPosRankSum=-0.3525;SOR=0.6205;ClippingRankSum=-0.138	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.372:111:56:2081:58:2218:-168.745,0.0,-156.414:56:50:111:54,54:1873,0,1825:1:.:1:.:.:.:0.000923847	0/1:122.372:289:43:1639:247:9465:-772.808,0.0,-68.8996:247:85:289:42,247:9718,0,926:.:1:1:.:.:.:-0.0160207
chr16	31196141	.	GTCTTTTTACTT	G	6380.57	REJECT	NS=2;DP=322;DPB=186.538;AC=2;AN=4;AF=0.5;RO=108;AO=246;PRO=79.5;PAO=8.5;QR=4047;QA=8370;PQR=2846.0;PQA=214.0;SRF=57;SRR=51;SAF=117;SAR=129;SRP=3.73412;SAP=4.28141;AB=0.694915;ABP=119.828;RUN=1;RPP=18.5813;RPPR=3.09072;RPL=102.0;RPR=144.0;EPP=23.348;EPPR=3.0103;DPRA=0.0;ODDS=218.795;GTI=0;TYPE=del;CIGAR=1M11D1M;NUMALT=1;MEANALT=1.0;LEN=11;MQM=60.2439;MQMR=60.0;PAIRED=0.99187;PAIREDR=0.972222;technology.ILLUMINA=1.0;MQ0=0;END=31196152;HOMLEN=6;HOMSEQ=TCTTTT;SVLEN=-11;SVTYPE=DEL;BaseQRankSum=0.3605;FS=3.0595;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=-0.2115;QD=19.18;ReadPosRankSum=1.4505;SOR=0.7525;ClippingRankSum=1.379	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.396:122:66:2481:43:1392:-96.9065,0.0,-271.292:62:46:136:72,78:2008,0,2903:1:.:1:1:.:.:0.000923847	0/1:119.396:267:42:1566:203:6978:-551.057,0.0,-224.829:203:83:246:47,325:26467,0,4879:.:1:1:1:.:.:-0.0160207
chr16	31196224	.	G	T	407.549	REJECT	NS=2;DP=291;DPB=382.333;AC=2;AN=2;AF=0.0;RO=195;AO=15;PRO=75.8333;PAO=23.5;QR=7214;QA=313;PQR=2613.17;PQA=720.0;SRF=81;SRR=114;SAF=0;SAR=15;SRP=15.1371;SAP=35.5824;AB=0.0515464;ABP=511.336;RUN=1;RPP=35.5824;RPPR=3.02144;RPL=0.0;RPR=15.0;EPP=35.5824;EPPR=5.51585;DPRA=0.0;ODDS=31.315;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.2051;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.247:75:48:1766:4:107:-14.52,-36.8735,-376.125:4:6:66:.:.:1:.:.:.:0.000923847	./1:160.002:216:147:5448:11:206:-31.6465,-87.153,-920.122:11:6:199:.:.:1:.:.:.:-0.0160207
chr16	31196224	.	G	GT	407.549	REJECT	NS=2;DP=291;DPB=382.333;AC=2;AN=4;AF=0.5;RO=195;AO=41;PRO=75.8333;PAO=47.8333;QR=7214;QA=1198;PQR=2613.17;PQA=1545.17;SRF=81;SRR=114;SAF=18;SAR=23;SRP=15.1371;SAP=4.33437;AB=0.140893;ABP=328.962;RUN=1;RPP=3.06326;RPPR=3.02144;RPL=20.0;RPR=21.0;EPP=5.60547;EPPR=5.51585;DPRA=0.0;ODDS=31.315;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.2051;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.435;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.631;QD=0.78;ReadPosRankSum=-0.681;SOR=0.754;ClippingRankSum=-0.927	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.1235:72:48:1766:10:285:-14.52,0.0,-160.239:11:17:68:57,13:107,0,1239:1:.:1:.:.:.:0.000923847	0/1:160.002:216:147:5448:31:913:-31.6465,0.0,-523.952:31:16:199:.:.:.:.:1:.:.:.:-0.0160207
chr16	31196224	.	GT	G	407.549	REJECT	NS=2;DP=291;DPB=382.333;AC=2;AN=2;AF=0.0;RO=195;AO=14;PRO=75.8333;PAO=41.8333;QR=7214;QA=496;PQR=2613.17;PQA=1396.67;SRF=81;SRR=114;SAF=5;SAR=9;SRP=15.1371;SAP=5.49198;AB=0.04811;ABP=519.157;RUN=1;RPP=5.49198;RPPR=3.02144;RPL=9.0;RPR=5.0;EPP=3.63072;EPPR=5.51585;DPRA=0.0;ODDS=31.315;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.2051;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.247:75:48:1766:4:159:-14.52,-14.6794,-196.201:4:6:66:.:.:1:.:.:.:0.000923847	./1:160.002:216:147:5448:10:337:-31.6465,-44.2734,-629.685:10:5:199:.:.:1:.:.:.:-0.0160207
chr16	31199399	.	G	T	14125.65	REJECT	NS=2;DP=369;DPB=415.0;AC=4;AN=4;AF=1.0;RO=0;AO=415;PRO=0.0;PAO=0.0;QR=0;QA=15979;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=236;SAR=179;SRP=0.0;SAP=20.0106;AB=0.0;ABP=0.0;RUN=1;RPP=3.14111;RPPR=0.0;RPL=210.0;RPR=205.0;EPP=3.64343;EPPR=0.0;DPRA=0.0;ODDS=61.7165;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99759;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.7143;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.56;SOR=1.0265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.29:89:0:0:92:3509:-315.869,-24.9281,0.0:89:100:89:0,87:3412,261,0:1:.:1:.:.:.:0.000923847	1/1:129.29:323:0:0:323:12470:-1121.58,-87.4888,0.0:323:100:323:0,323:13965,963,0:.:1:1:.:.:.:-0.0160207
chr16	31202698	.	A	AT	800.113	REJECT	NS=2;DP=268;DPB=344.522;AC=2;AN=3;AF=0.25;RO=121;AO=38;PRO=65.8333;PAO=62.8333;QR=4278;QA=1238;PQR=2273.33;PQA=2140.33;SRF=92;SRR=29;SAF=24;SAR=14;SRP=74.2382;SAP=8.7247;AB=0.141791;ABP=301.701;RUN=1;RPP=3.9246;RPPR=24.9942;RPL=17.0;RPR=21.0;EPP=6.66752;EPPR=6.04318;DPRA=0.0;ODDS=3.66782;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=2;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=59.9835;PAIRED=1.0;PAIREDR=0.991736;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.062;FS=7.995;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-1.037;QD=0.2;RPA=17,18;RU=T;ReadPosRankSum=0.629;SOR=0.228;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:16.0386:60:28:993:9:334:-19.951,0.0,-79.5177:9:19:47:.:.:.:.:1:.:.:.:0.000923847	./1:107.825:236:93:3285:29:904:-67.4746,-15.2642,-294.622:32:18:181:167,36:89,0,2138:.:1:1:.:.:.:-0.0160207
chr16	31202698	.	AT	A	800.113	REJECT	NS=2;DP=268;DPB=344.522;AC=2;AN=3;AF=0.25;RO=121;AO=47;PRO=65.8333;PAO=50.3333;QR=4278;QA=1567;PQR=2273.33;PQA=1726.33;SRF=92;SRR=29;SAF=31;SAR=16;SRP=74.2382;SAP=13.4056;AB=0.175373;ABP=248.322;RUN=1;RPP=4.16534;RPPR=24.9942;RPL=21.0;RPR=26.0;EPP=10.8184;EPPR=6.04318;DPRA=0.0;ODDS=3.66782;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=2;MEANALT=21.0;LEN=1;MQM=59.7447;MQMR=59.9835;PAIRED=0.978723;PAIREDR=0.991736;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.069;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.652;QD=1.7;ReadPosRankSum=-0.034;SOR=0.346;ClippingRankSum=0.481	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:57.5193:58:28:993:10:347:-19.951,-1.98551,-109.399:13:25:51:40,16:156,0,619:1:.:1:.:.:.:0.000923847	0/1:126.65:208:93:3285:37:1220:-67.4746,0.0,-373.762:37:23:159:.:.:.:.:1:.:.:.:-0.0160207
chr16	31526823	.	G	A	8698.255000000001	REJECT	NS=2;DP=360;DPB=420.0;AC=3;AN=4;AF=0.75;RO=109;AO=311;PRO=0.0;PAO=0.0;QR=4182;QA=12061;PQR=0.0;PQA=0.0;SRF=44;SRR=65;SAF=122;SAR=189;SRP=11.7958;SAP=34.3535;AB=0.640264;ABP=54.7888;RUN=1;RPP=24.1315;RPPR=11.7958;RPL=183.0;RPR=128.0;EPP=36.2527;EPPR=5.42083;DPRA=0.0;ODDS=73.9752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9871;MQMR=60.0;PAIRED=0.993569;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.06;Dels=0.0;FS=0.223;HaplotypeScore=5.8989;MLEAC=1;MLEAF=0.75;MQ=59.985;MQRankSum=0.766;QD=29.565;ReadPosRankSum=0.168;SOR=0.996	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:116:0:0:117:4487:-403.809,-31.7011,0.0:116:100:116:0,116:4642,348,0:1:.:1:.:.:.:0.000923847	0/1:129.501:302:109:4182:194:7574:-599.181,0.0,-294.056:193:64:302:108,193:7540,0,3705:.:1:1:.:.:.:-0.0160207
chr16	33601187	.	C	T	3770.58	REJECT	NS=2;DP=370;DPB=416.0;AC=2;AN=4;AF=0.5;RO=271;AO=144;PRO=0.0;PAO=0.0;QR=10439;QA=5548;PQR=0.0;PQA=0.0;SRF=130;SRR=141;SAF=82;SAR=62;SRP=3.97985;SAP=9.04217;AB=0.346154;ABP=88.5329;RUN=1;RPP=5.18177;RPPR=16.4798;RPL=66.0;RPR=78.0;EPP=32.2045;EPPR=19.2362;DPRA=0.0;ODDS=110.416;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99631;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2005;Dels=0.0;FS=5.804;HaplotypeScore=101.706;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1295;QD=9.995;ReadPosRankSum=-0.4495;SOR=0.8545;ClippingRankSum=-1.068	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:70:2689:22:820:-48.8999,0.0,-217.128:21:23:89:66,20:603,0,2684:1:.:1:.:.:.:0.000923847	0/1:129.501:324:201:7750:122:4728:-337.756,0.0,-609.565:122:38:323:201,122:4342,0,7719:.:1:1:.:.:.:-0.0160207
chr16	33601195	.	C	T	4015.9300000000003	REJECT	NS=2;DP=384;DPB=433.0;AC=2;AN=4;AF=0.5;RO=270;AO=162;PRO=0.0;PAO=0.0;QR=10159;QA=6175;PQR=0.0;PQA=0.0;SRF=129;SRR=141;SAF=79;SAR=83;SRP=4.16842;SAP=3.22477;AB=0.374134;ABP=62.5929;RUN=1;RPP=5.63751;RPPR=5.06918;RPL=74.0;RPR=88.0;EPP=39.2551;EPPR=10.2485;DPRA=0.0;ODDS=308.973;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993827;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4275;Dels=0.0;FS=0.0;HaplotypeScore=100.673;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4305;QD=14.45;ReadPosRankSum=0.118;SOR=0.664;ClippingRankSum=0.528	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.886:94:48:1787:49:1909:-145.551,0.0,-134.576:48:51:94:44,47:1645,0,1646:1:.:1:.:.:.:0.000923847	0/1:118.886:336:222:8372:113:4266:-293.418,0.0,-662.295:113:34:335:222,113:3769,0,8305:.:1:1:.:.:.:-0.0160207
chr16	46582406	.	A	G	889.0385	REJECT	NS=2;DP=248;DPB=282.0;AC=2;AN=4;AF=0.5;RO=231;AO=51;PRO=0.0;PAO=0.0;QR=8944;QA=1976;PQR=0.0;PQA=0.0;SRF=146;SRR=85;SAF=32;SAR=19;SRP=37.9889;SAP=10.206;AB=0.180851;ABP=252.499;RUN=1;RPP=10.206;RPPR=58.7448;RPL=19.0;RPR=32.0;EPP=3.05288;EPPR=8.8855;DPRA=0.0;ODDS=61.6599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.178;Dels=0.0;FS=5.5445;HaplotypeScore=5.9325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.336;QD=7.23;ReadPosRankSum=1.106;SOR=0.6945;ClippingRankSum=0.106	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:66:41:1564:26:1018:-73.5036,0.0,-122.689:25:38:66:41,25:858,0,1536:1:.:1:.:.:.:2.26394e-05	0/1:129.501:214:190:7380:25:958:-27.9205,0.0,-605.634:25:12:214:189,25:433,0,7597:.:1:1:.:.:.:-0.0352835
chr16	50827601	.	A	G	8906.244999999999	REJECT	NS=2;DP=239;DPB=275.0;AC=4;AN=4;AF=1.0;RO=0;AO=275;PRO=0.0;PAO=0.0;QR=0;QA=10464;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=75;SAR=200;SRP=0.0;SAP=126.389;AB=0.0;ABP=0.0;RUN=1;RPP=134.412;RPPR=0.0;RPL=202.0;RPR=73.0;EPP=4.78696;EPPR=0.0;DPRA=0.0;ODDS=48.5964;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985455;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.07;SOR=1.839	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:69:0:0:71:2659:-239.436,-19.2301,0.0:69:100:69:0,68:2820,204,0:1:.:1:.:.:.:2.26394e-05	1/1:129.501:204:0:0:204:7805:-702.136,-55.2434,0.0:204:100:204:0,204:8730,605,0:.:1:1:.:.:.:-0.0352835
chr16	51057736	.	G	T	15049.349999999999	REJECT	NS=2;DP=396;DPB=455.0;AC=4;AN=4;AF=1.0;RO=0;AO=454;PRO=0.0;PAO=0.0;QR=0;QA=17483;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=200;SAR=254;SRP=0.0;SAP=16.9575;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=227.0;RPR=227.0;EPP=30.6368;EPPR=0.0;DPRA=0.0;ODDS=76.0856;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991189;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.965;SOR=0.884	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:115:4418:-397.624,-31.1685,0.0:113:100:113:0,111:4625,334,0:1:.:1:.:.:.:2.26394e-05	1/1:129.501:339:0:0:339:13065:-1175.02,-91.7721,0.0:338:100:338:0,337:14485,996,0:.:1:1:.:.:.:-0.0352835
chr16	51098427	.	G	C	1721.695	REJECT	NS=2;DP=364;DPB=426.0;AC=2;AN=4;AF=0.5;RO=336;AO=90;PRO=0.0;PAO=0.0;QR=12877;QA=3487;PQR=0.0;PQA=0.0;SRF=131;SRR=205;SAF=37;SAR=53;SRP=38.4001;SAP=9.18693;AB=0.211268;ABP=311.482;RUN=1;RPP=9.18693;RPPR=72.911;RPL=53.0;RPR=37.0;EPP=19.3205;EPPR=7.3791;DPRA=0.0;ODDS=149.214;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.988095;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5605;Dels=0.0;FS=2.481;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1365;QD=8.035;ReadPosRankSum=0.3485;SOR=0.5395;ClippingRankSum=-0.841	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.429:119:74:2831:47:1826:-131.544,0.0,-221.985:46:39:119:72,46:1572,0,2571:1:.:1:.:.:.:2.26394e-05	0/1:123.429:304:262:10046:43:1661:-66.8121,0.0,-820.974:43:14:304:260,43:969,0,10207:.:1:1:.:.:.:-0.0352835
chr16	56855496	.	C	G	5257.87	REJECT	NS=2;DP=338;DPB=383.0;AC=2;AN=4;AF=0.5;RO=196;AO=187;PRO=0.0;PAO=0.0;QR=7419;QA=7114;PQR=0.0;PQA=0.0;SRF=93;SRR=103;SAF=84;SAR=103;SRP=4.11819;SAP=7.20229;AB=0.488251;ABP=3.46954;RUN=1;RPP=5.62303;RPPR=10.4997;RPL=101.0;RPR=86.0;EPP=40.7382;EPPR=20.7366;DPRA=0.0;ODDS=259.846;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994652;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6175;Dels=0.0;FS=0.848;HaplotypeScore=9.7562;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.381;QD=16.995;ReadPosRankSum=0.479;SOR=0.805;ClippingRankSum=0.625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:48:1760:41:1540:-114.526,0.0,-134.355:41:46:88:46,41:1400,0,1556:1:.:1:.:.:.:2.26394e-05	0/1:129.501:293:148:5659:146:5574:-421.755,0.0,-429.393:145:49:293:148,145:5366,0,5433:.:1:1:.:.:.:-0.0352835
chr16	56864618	.	C	T	1478.38	PASS	SOMATIC;NS=2;DP=269;DPB=269.0;AC=1;AN=3;AF=0.25;RO=207;AO=62;PRO=0.0;PAO=0.0;QR=7960;QA=2385;PQR=0.0;PQA=0.0;SRF=63;SRR=144;SAF=11;SAR=51;SRP=71.8365;SAP=59.0483;AB=0.306931;ABP=68.4125;RUN=1;RPP=14.358;RPPR=42.0444;RPL=40.0;RPR=22.0;EPP=3.57068;EPPR=9.56668;DPRA=3.01493;ODDS=42.7712;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983871;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.281;Dels=0.0;FS=11.198;HaplotypeScore=3.9574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.191;QD=9.99;ReadPosRankSum=0.038;SOR=1.598	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:67:67:2551:0:0:0.0,-18.1493,-229.725:0:0:67:67,0:.:0.0:0:.:.:.:0:.:.:0:2.26394e-05	0/1:129.501:201:140:5409:62:2385:-159.85,0.0,-431.861:61:31:201:135,59:38.0:0.307:2:2037,0,5438:.:1:1:.:.:1:-0.0352835
chr16	56868700	.	A	G	2387.96	PASS	SOMATIC;NS=2;DP=373;DPB=373.0;AC=1;AN=3;AF=0.25;RO=279;AO=94;PRO=0.0;PAO=0.0;QR=10791;QA=3558;PQR=0.0;PQA=0.0;SRF=136;SRR=143;SAF=42;SAR=52;SRP=3.39167;SAP=5.32038;AB=0.338129;ABP=66.2798;RUN=1;RPP=8.9241;RPPR=4.76149;RPL=55.0;RPR=39.0;EPP=3.0103;EPPR=16.0936;DPRA=2.92632;ODDS=60.2774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.957447;PAIREDR=0.992832;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.697;Dels=0.0;FS=0.465;HaplotypeScore=6.8986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.382;QD=11.07;ReadPosRankSum=0.45;SOR=0.735	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:95:3666:0:0:0.0,-25.7522,-330.002:0:0:93:92,0:.:0.0:0:.:.:.:0:.:.:0:2.26394e-05	0/1:129.501:276:184:7125:94:3558:-244.746,0.0,-565.579:92:34:276:174,90:37.0:0.352:2:3084,0,7157:.:1:1:.:.:1:-0.0352835
chr16	56873495	.	C	T	2571.56	PASS	SOMATIC;NS=2;DP=411;DPB=411.0;AC=1;AN=3;AF=0.25;RO=306;AO=104;PRO=0.0;PAO=0.0;QR=11591;QA=3824;PQR=0.0;PQA=0.0;SRF=162;SRR=144;SAF=52;SAR=52;SRP=5.30951;SAP=3.0103;AB=0.346667;ABP=64.2748;RUN=1;RPP=4.34659;RPPR=11.2136;RPL=56.0;RPR=48.0;EPP=8.35546;EPPR=11.2136;DPRA=2.7027;ODDS=70.2523;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0962;MQMR=59.9967;PAIRED=0.990385;PAIREDR=0.993464;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.596;Dels=0.0;FS=0.922;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.391;QD=11.02;ReadPosRankSum=1.422;SOR=0.673	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.539:108:111:4240:0:0:0.0,-30.0842,-381.625:0:0:108:105,0:.:0.0:0:.:.:.:0:.:.:0:2.26394e-05	0/1:121.2695:298:195:7351:104:3824:-263.018,0.0,-580.296:103:35:297:186,99:36.0:0.347:2:3311,0,7313:.:1:1:.:.:1:-0.0352835
chr16	56876467	.	C	T	1360.34	REJECT	NS=2;DP=262;DPB=363.238;AC=2;AN=2;AF=0.0;RO=82;AO=36;PRO=57.7167;PAO=12.2167;QR=2909;QA=438;PQR=2049.62;PQA=347.95;SRF=54;SRR=28;SAF=0;SAR=36;SRP=20.9117;SAP=81.1833;AB=0.137405;ABP=302.209;RUN=1;RPP=37.7539;RPPR=111.478;RPL=6.0;RPR=30.0;EPP=37.7539;EPPR=54.2782;DPRA=0.0;ODDS=9.27647;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=59.3611;MQMR=59.7927;PAIRED=1.0;PAIREDR=0.987805;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2876:60:24:861:6:117:-18.5088,-47.7367,-483.926:6:12:49:.:.:1:.:.:.:2.26394e-05	./1:160.002:202:58:2048:30:321:-134.558,-215.973,-1338.46:30:18:169:.:.:1:.:.:.:-0.0352835
chr16	56876467	.	C	CT	1360.34	REJECT	NS=2;DP=262;DPB=363.238;AC=2;AN=3;AF=0.25;RO=82;AO=25;PRO=57.7167;PAO=46.7167;QR=2909;QA=741;PQR=2049.62;PQA=1626.62;SRF=54;SRR=28;SAF=15;SAR=10;SRP=20.9117;SAP=5.18177;AB=0.0954198;ABP=375.509;RUN=1;RPP=28.1125;RPPR=111.478;RPL=21.0;RPR=4.0;EPP=5.18177;EPPR=54.2782;DPRA=0.0;ODDS=9.27647;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=59.7927;PAIRED=0.96;PAIREDR=0.987805;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40.2876:60:24:861:8:246:-18.5088,0.0,-80.6954:8:16:49:.:.:1:.:.:.:2.26394e-05	./1:160.002:202:58:2048:17:495:-134.558,-113.03,-306.351:17:10:169:.:.:1:.:.:.:-0.0352835
chr16	56876467	.	CT	C	1360.34	REJECT	NS=2;DP=262;DPB=363.238;AC=2;AN=3;AF=0.25;RO=82;AO=60;PRO=57.7167;PAO=48.05;QR=2909;QA=1903;PQR=2049.62;PQA=1638.62;SRF=54;SRR=28;SAF=37;SAR=23;SRP=20.9117;SAP=10.1038;AB=0.229008;ABP=170.131;RUN=1;RPP=79.5909;RPPR=111.478;RPL=53.0;RPR=7.0;EPP=31.3842;EPPR=54.2782;DPRA=0.0;ODDS=9.27647;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=59.7927;PAIRED=0.983333;PAIREDR=0.987805;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2876:60:24:861:9:278:-18.5088,-3.7056,-119.044:9:18:49:.:.:1:.:.:.:2.26394e-05	0/1:160.002:202:58:2048:51:1625:-134.558,0.0,-246.638:51:30:169:.:.:1:.:.:.:-0.0352835
chr16	56876467	.	CTT	C	1360.34	REJECT	NS=2;DP=262;DPB=363.238;AC=2;AN=2;AF=0.0;RO=82;AO=15;PRO=57.7167;PAO=31.3;QR=2909;QA=415;PQR=2049.62;PQA=1097.2;SRF=54;SRR=28;SAF=8;SAR=7;SRP=20.9117;SAP=3.15506;AB=0.0572519;ABP=449.107;RUN=1;RPP=10.1038;RPPR=111.478;RPL=11.0;RPR=4.0;EPP=3.15506;EPPR=54.2782;DPRA=0.0;ODDS=9.27647;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=4;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=59.7927;PAIRED=1.0;PAIREDR=0.987805;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.29;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-0.167;QD=0.8;RPA=15,13;RU=T;ReadPosRankSum=-0.105;SOR=0.732;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2876:60:24:861:2:54:-18.5088,-29.3706,-193.842:2:4:49:.:.:.:.:1:.:.:.:2.26394e-05	./1:129.501:254:58:2048:13:361:-134.558,-138.19,-523.698:21:12:170:142,29:290,0,3577:.:1:1:.:.:.:-0.0352835
chr16	57052730	.	C	G	5770.465	REJECT	NS=2;DP=407;DPB=468.0;AC=2;AN=4;AF=0.5;RO=258;AO=210;PRO=0.0;PAO=0.0;QR=9800;QA=7996;PQR=0.0;PQA=0.0;SRF=139;SRR=119;SAF=125;SAR=85;SRP=6.37692;SAP=19.5549;AB=0.448718;ABP=13.7006;RUN=1;RPP=5.03701;RPPR=3.0103;RPL=98.0;RPR=112.0;EPP=23.0292;EPPR=27.553;DPRA=0.0;ODDS=319.641;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995238;PAIREDR=0.996124;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.549;Dels=0.0;FS=3.826;HaplotypeScore=4.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.706;QD=15.225;ReadPosRankSum=0.617;SOR=1.039;ClippingRankSum=0.827	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:69:2585:51:1924:-140.657,0.0,-200.147:51:43:118:66,51:1664,0,2326:1:.:1:.:.:.:2.26394e-05	0/1:129.501:347:189:7215:159:6072:-451.904,0.0,-554.7:159:46:347:188,159:5743,0,6987:.:1:1:.:.:.:-0.0352835
chr16	67117201	.	A	AT	345.665	REJECT	NS=2;DP=99;DPB=147.0;AC=2;AN=3;AF=0.25;RO=52;AO=19;PRO=35.5833;PAO=26.5833;QR=1908;QA=618;PQR=1270.0;PQA=946.0;SRF=13;SRR=39;SAF=7;SAR=12;SRP=31.2394;SAP=5.8675;AB=0.191919;ABP=84.627;RUN=1;RPP=5.8675;RPPR=16.5402;RPL=12.0;RPR=7.0;EPP=3.12459;EPPR=5.68288;DPRA=0.0;ODDS=2.82244;GTI=1;TYPE=ins;CIGAR=1M1I21M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.25085:24:12:432:4:151:-9.89317,-0.624318,-35.2268:4:18:22:.:.:1:.:.:.:-0.452991	0/1:160.002:75:40:1476:15:467:-30.3621,0.0,-150.071:15:22:67:.:.:1:.:.:.:-0.0352835
chr16	67117201	.	AT	A	345.665	REJECT	NS=2;DP=99;DPB=147.0;AC=2;AN=3;AF=0.25;RO=52;AO=14;PRO=35.5833;PAO=22.9167;QR=1908;QA=456;PQR=1270.0;PQA=783.0;SRF=13;SRR=39;SAF=1;SAR=13;SRP=31.2394;SAP=25.3454;AB=0.141414;ABP=113.58;RUN=1;RPP=3.63072;RPPR=16.5402;RPL=8.0;RPR=6.0;EPP=3.0103;EPPR=5.68288;DPRA=0.0;ODDS=2.82244;GTI=1;TYPE=del;CIGAR=1M1D20M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=58.5714;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.25085:24:12:432:4:132:-9.89317,0.0,-50.5783:4:18:22:.:.:1:.:.:.:-0.452991	./1:160.002:75:40:1476:10:324:-30.3621,-25.0516,-262.562:10:15:67:.:.:1:.:.:.:-0.0352835
chr16	67117217	.	G	T	345.665	REJECT	NS=2;DP=99;DPB=147.0;AC=2;AN=2;AF=0.0;RO=52;AO=4;PRO=35.5833;PAO=18.9167;QR=1908;QA=56;PQR=1270.0;PQA=666.0;SRF=13;SRR=39;SAF=4;SAR=0;SRP=31.2394;SAP=11.6962;AB=0.040404;ABP=184.646;RUN=1;RPP=11.6962;RPPR=16.5402;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=5.68288;DPRA=0.0;ODDS=2.82244;GTI=1;TYPE=snp;CIGAR=16M1X5M;NUMALT=3;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.25085:24:12:432:2:28:-9.89317,-14.4241,-84.484:2:9:22:.:.:1:.:.:.:-0.452991	./1:160.002:75:40:1476:2:28:-30.3621,-52.7745,-324.335:2:3:67:.:.:1:.:.:.:-0.0352835
chr16	67118943	.	ATTAT	A	1412.18	REJECT	NS=2;DP=353;DPB=362.091;AC=2;AN=4;AF=0.5;RO=275;AO=77;PRO=53.5;PAO=21.5;QR=10560;QA=2852;PQR=1894.5;PQA=724.5;SRF=93;SRR=182;SAF=18;SAR=59;SRP=65.5566;SAP=50.4161;AB=0.21813;ABP=246.615;RUN=1;RPP=13.1908;RPPR=3.08137;RPL=48.0;RPR=29.0;EPP=3.26411;EPPR=13.8203;DPRA=0.0;ODDS=63.2848;GTI=0;TYPE=del;CIGAR=1M4D6M;NUMALT=1;MEANALT=1.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=67118947;HOMLEN=3;HOMSEQ=TTA;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=0.586;FS=10.399;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.145;QD=17.96;ReadPosRankSum=0.577;SOR=1.668;ClippingRankSum=-0.414	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:51,56:49:51:100:121.1825:93:43:1625:44:1637:-121.614,0.0,-147.366:1905,0,2562:1:.:1:1:.:.:-0.452991	0/1:249,52:42:14:283:143.365:266:232:8935:33:1215:-30.996,0.0,-803.89:.:.:.:1:1:.:.:-0.0352835
chr16	67120715	.	T	A	3042.225	REJECT	NS=2;DP=507;DPB=582.0;AC=2;AN=4;AF=0.5;RO=429;AO=153;PRO=0.0;PAO=0.0;QR=16177;QA=5722;PQR=0.0;PQA=0.0;SRF=221;SRR=208;SAF=79;SAR=74;SRP=3.86573;SAP=3.36512;AB=0.262887;ABP=287.227;RUN=1;RPP=4.72761;RPPR=4.14918;RPL=82.0;RPR=71.0;EPP=6.20364;EPPR=11.519;DPRA=0.0;ODDS=302.44;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997669;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.48;Dels=0.0;FS=1.405;HaplotypeScore=11.7486;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.246;QD=11.05;ReadPosRankSum=-0.2885;SOR=0.6855;ClippingRankSum=-1.508	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:145:69:2604:80:2949:-224.998,0.0,-193.985:77:53:145:67,75:2601,0,2329:1:.:1:.:.:.:0.00488421	0/1:129.501:433:360:13573:73:2773:-132.568,0.0,-1103.49:73:17:433:360,73:1809,0,13847:.:1:1:.:.:.:-0.0352835
chr16	67120890	.	TT	GA	18544.949999999997	REJECT	NS=2;DP=487;DPB=554.0;AC=4;AN=4;AF=1.0;RO=0;AO=545;PRO=0.0;PAO=12.0;QR=0;QA=20530;PQR=0.0;PQA=443.0;SRF=0;SRR=0;SAF=288;SAR=257;SRP=0.0;SAP=6.83926;AB=0.0;ABP=0.0;RUN=1;RPP=3.90678;RPPR=0.0;RPL=265.0;RPR=280.0;EPP=3.10991;EPPR=0.0;DPRA=0.0;ODDS=86.5717;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=2.5;LEN=2;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=-1.065;Dels=0.0;FS=0.0;HaplotypeScore=6.9231;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.472;QD=30.955;ReadPosRankSum=1.399;SOR=0.5185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.4965:132:0:0:129:4810:-443.261,-35.7226,0.0:132:100:132:0,136:6133,415,0:1:.:1:.:.:.:0.00488421	1/1:123.4965:422:0:0:416:15720:-1443.23,-115.033,0.0:420:100:421:1,425:18302,1222,0:.:1:1:.:.:.:-0.0352835
chr16	67123241	.	C	G	3148.105	REJECT	NS=2;DP=589;DPB=673.0;AC=2;AN=4;AF=0.5;RO=525;AO=148;PRO=0.0;PAO=0.0;QR=20031;QA=5649;PQR=0.0;PQA=0.0;SRF=269;SRR=256;SAF=70;SAR=78;SRP=3.70931;SAP=3.94932;AB=0.219911;ABP=461.598;RUN=1;RPP=4.47751;RPPR=3.21297;RPL=69.0;RPR=79.0;EPP=10.1116;EPPR=8.67267;DPRA=0.0;ODDS=168.289;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993243;PAIREDR=0.998095;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.2715;Dels=0.0;FS=3.06;HaplotypeScore=7.8579;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5215;QD=10.4;ReadPosRankSum=0.3015;SOR=0.889;ClippingRankSum=-0.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:167:82:3145:86:3302:-251.562,0.0,-237.467:86:51:167:80,86:3133,0,2772:1:.:1:.:.:.:0.00488421	0/1:129.501:505:443:16886:62:2347:-74.3823,0.0,-1381.88:62:12:505:443,62:1144,0,17274:.:1:1:.:.:.:-0.0352835
chr16	67123926	.	C	T	2778.13	REJECT	NS=2;DP=574;DPB=660.0;AC=2;AN=4;AF=0.5;RO=518;AO=141;PRO=0.0;PAO=0.0;QR=19560;QA=5366;PQR=0.0;PQA=0.0;SRF=286;SRR=232;SAF=67;SAR=74;SRP=15.2343;SAP=3.76493;AB=0.213636;ABP=473.114;RUN=1;RPP=4.87376;RPPR=4.68711;RPL=65.0;RPR=76.0;EPP=4.87376;EPPR=7.30294;DPRA=0.0;ODDS=208.504;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990347;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.605;Dels=0.0;FS=7.1745;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.091;QD=8.96;ReadPosRankSum=0.195;SOR=0.5695;ClippingRankSum=-0.792	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5215:169:94:3549:76:2880:-213.103,0.0,-273.253:76:45:169:92,76:2604,0,3139:1:.:1:.:.:.:0.00488421	0/1:117.5215:489:424:16011:65:2486:-91.2131,0.0,-1307.56:65:13:489:424,65:1337,0,16388:.:1:1:.:.:.:-0.0352835
chr16	67126356	.	T	G	2271.02	REJECT	NS=2;DP=446;DPB=512.0;AC=2;AN=4;AF=0.5;RO=396;AO=116;PRO=0.0;PAO=0.0;QR=15143;QA=4424;PQR=0.0;PQA=0.0;SRF=190;SRR=206;SAF=58;SAR=58;SRP=4.41408;SAP=3.0103;AB=0.226562;ABP=335.517;RUN=1;RPP=4.20835;RPPR=3.20771;RPL=62.0;RPR=54.0;EPP=4.20835;EPPR=9.34924;DPRA=0.0;ODDS=213.366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.979798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5815;Dels=0.0;FS=1.228;HaplotypeScore=3.924;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2575;QD=9.63;ReadPosRankSum=0.1815;SOR=0.6525;ClippingRankSum=-0.038	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.971:124:68:2633:59:2227:-165.983,0.0,-202.561:58:47:124:64,58:2036,0,2365:1:.:1:.:.:.:0.00488421	0/1:120.971:383:328:12510:57:2197:-93.3765,0.0,-1020.87:57:15:383:324,57:1343,0,12628:.:1:1:.:.:.:-0.0352835
chr16	67126740	.	C	T	23.79	LowQual	SOMATIC;DP=8;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.322;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=57.66;MQRankSum=0.684;QD=2.97;ReadPosRankSum=-0.684;SOR=1.27	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:0.00488421	0/1:5,3:8:52.0:52,0,105:3:38:8:.:1:.:.:.:.:-0.0352835
chr16	67128020	.	C	T	284.631	REJECT	NS=2;DP=127;DPB=224.621;AC=2;AN=2;AF=0.0;RO=37;AO=10;PRO=99.25;PAO=22.0833;QR=1253;QA=80;PQR=3423.58;PQA=664.25;SRF=11;SRR=26;SAF=0;SAR=10;SRP=16.2152;SAP=24.725;AB=0.0787402;ABP=198.768;RUN=1;RPP=3.87889;RPPR=3.06899;RPL=4.0;RPR=6.0;EPP=3.87889;EPPR=10.1116;DPRA=0.0;ODDS=27.7528;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=3;MEANALT=20.5;LEN=1;MQM=52.4;MQMR=57.3784;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:14:475:3:18:-20.6725,-47.2343,-333.041:3:10:31:.:.:1:.:.:.:0.00488421	./1:117.995:86:23:778:7:62:-12.991,-91.8031,-982.171:7:14:51:.:.:1:.:.:.:-0.0352835
chr16	67128020	.	CT	C	284.631	REJECT	NS=2;DP=127;DPB=224.621;AC=2;AN=4;AF=0.5;RO=37;AO=25;PRO=99.25;PAO=66.75;QR=1253;QA=552;PQR=3423.58;PQA=2193.08;SRF=11;SRR=26;SAF=10;SAR=15;SRP=16.2152;SAP=5.18177;AB=0.19685;ABP=104.386;RUN=1;RPP=3.79203;RPPR=3.06899;RPL=14.0;RPR=11.0;EPP=5.18177;EPPR=10.1116;DPRA=0.0;ODDS=27.7528;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=3;MEANALT=20.5;LEN=1;MQM=59.08;MQMR=57.3784;PAIRED=0.96;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.144;FS=5.315;MLEAC=1;MLEAF=0.5;MQ=58.77;MQRankSum=-0.818;QD=1.19;ReadPosRankSum=0.048;SOR=0.086;ClippingRankSum=0.048	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:33:14:475:11:305:-20.6725,0.0,-68.6929:10:37:28:15,10:111,0,180:1:.:1:.:.:.:0.00488421	0/1:117.995:86:23:778:14:247:-12.991,0.0,-142.347:14:27:51:.:.:.:.:1:.:.:.:-0.0352835
chr16	67128020	.	CTT	C	284.631	REJECT	NS=2;DP=127;DPB=224.621;AC=2;AN=2;AF=0.0;RO=37;AO=10;PRO=99.25;PAO=55.9167;QR=1253;QA=276;PQR=3423.58;PQA=1858.08;SRF=11;SRR=26;SAF=6;SAR=4;SRP=16.2152;SAP=3.87889;AB=0.0787402;ABP=198.768;RUN=1;RPP=10.8276;RPPR=3.06899;RPL=8.0;RPR=2.0;EPP=3.87889;EPPR=10.1116;DPRA=0.0;ODDS=27.7528;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=3;MEANALT=20.5;LEN=2;MQM=59.7;MQMR=57.3784;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:14:475:3:46:-20.6725,-26.8289,-125.521:3:10:31:.:.:1:.:.:.:0.00488421	./1:117.995:86:23:778:7:230:-12.991,-11.1722,-198.825:7:14:51:.:.:1:.:.:.:-0.0352835
chr16	67128081	.	G	T	1649.5900000000001	REJECT	NS=2;DP=215;DPB=254.0;AC=2;AN=4;AF=0.5;RO=172;AO=82;PRO=0.0;PAO=0.0;QR=5898;QA=2959;PQR=0.0;PQA=0.0;SRF=92;SRR=80;SAF=49;SAR=33;SRP=4.82828;SAP=9.78953;AB=0.322835;ABP=72.258;RUN=1;RPP=23.7717;RPPR=48.4597;RPL=27.0;RPR=55.0;EPP=69.2137;EPPR=42.6018;DPRA=0.0;ODDS=167.682;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7561;MQMR=60.1744;PAIRED=1.0;PAIREDR=0.994186;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.296;Dels=0.0;FS=1.0585;HaplotypeScore=9.6506;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.2705;QD=13.655;ReadPosRankSum=0.352;SOR=0.8895;ClippingRankSum=0.032	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:32:1039:45:1574:-120.902,0.0,-72.7489:43:60:72:26,42:1488,0,741:1:.:1:.:.:.:0.00488421	0/1:129.501:176:140:4859:37:1385:-78.2824,0.0,-389.298:37:21:176:139,37:1056,0,4890:.:1:1:.:.:.:-0.0352835
chr16	67129657	.	A	G	81.8066	REJECT;LowQual	NS=2;DP=13;DPB=15.0;AC=3;AN=4;AF=0.5;RO=10;AO=5;PRO=0.0;PAO=0.0;QR=351;QA=182;PQR=0.0;PQA=0.0;SRF=0;SRR=10;SAF=1;SAR=4;SRP=24.725;SAP=6.91895;AB=0.333333;ABP=6.62942;RUN=1;RPP=3.44459;RPPR=10.8276;RPL=3.0;RPR=2.0;EPP=6.91895;EPPR=10.8276;DPRA=0.0;ODDS=3.34536;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.8;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.118;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.825;QD=16.705;ReadPosRankSum=-0.825;SOR=0.6325	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:11.84205:3:1:27:3:108:-8.87017,0.0,-1.38399:3:87:3:0,3:122,9,0:1:.:1:.:.:.:-3.14118	0/1:39.7029:11:9:324:2:74:-3.71349,0.0,-26.4257:2:18:11:9,2:50,0,334:.:1:1:.:.:.:-0.0352835
chr16	67130213	.	C	CA	51.1969	REJECT	NS=2;DP=185;DPB=288.929;AC=2;AN=3;AF=0.25;RO=144;AO=17;PRO=79.0;PAO=68.0;QR=5375;QA=600;PQR=2789.67;PQA=2383.67;SRF=120;SRR=24;SAF=16;SAR=1;SRP=141.985;SAP=31.7504;AB=0.0918919;ABP=270.641;RUN=1;RPP=9.26925;RPPR=18.4519;RPL=5.0;RPR=12.0;EPP=6.20364;EPPR=3.0103;DPRA=0.0;ODDS=0.00337105;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.64406:45:33:1223:4:144:-2.74341,-0.894897,-112.881:4:10:41:.:.:1:.:.:.:-3.14118	0/1:51.0155:140:111:4152:13:456:-11.4677,0.0,-367.567:13:10:133:.:.:1:.:.:.:-0.0352835
chr16	67130213	.	CA	C	51.1969	REJECT	NS=2;DP=185;DPB=288.929;AC=2;AN=3;AF=0.25;RO=144;AO=13;PRO=79.0;PAO=67.0;QR=5375;QA=471;PQR=2789.67;PQA=2352.67;SRF=120;SRR=24;SAF=10;SAR=3;SRP=141.985;SAP=11.1951;AB=0.0702703;ABP=299.751;RUN=1;RPP=11.1951;RPPR=18.4519;RPL=3.0;RPR=10.0;EPP=3.17734;EPPR=3.0103;DPRA=0.0;ODDS=0.00337105;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2.64406:45:33:1223:4:160:-2.74341,0.0,-116.308:4:10:41:.:.:1:.:.:.:-3.14118	./1:51.0155:140:111:4152:9:311:-11.4677,-10.1769,-397.985:9:7:133:.:.:1:.:.:.:-0.0352835
chr16	67131448	.	C	CA	20.3618	REJECT	NS=2;DP=100;DPB=213.56;AC=2;AN=3;AF=0.25;RO=30;AO=7;PRO=76.3333;PAO=75.3333;QR=1046;QA=183;PQR=2514.83;PQA=2482.83;SRF=22;SRR=8;SAF=3;SAR=4;SRP=17.1973;SAP=3.32051;AB=0.07;ABP=163.612;RUN=1;RPP=10.7656;RPPR=31.9633;RPL=1.0;RPR=6.0;EPP=3.32051;EPPR=7.64277;DPRA=0.0;ODDS=0.914949;GTI=1;TYPE=ins;CIGAR=1M1I24M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.8;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:20.3597:34:10:343:4:102:-5.39102,0.0,-27.1289:4:17:23:.:.:1:.:.:.:-0.493592	./1:1.38434e-05:66:20:703:3:81:-0.924261,-0.137342,-59.7482:3:7:41:.:.:1:.:.:.:-0.0352835
chr16	67131448	.	CA	C	20.3618	REJECT	NS=2;DP=100;DPB=213.56;AC=2;AN=3;AF=0.25;RO=30;AO=20;PRO=76.3333;PAO=38.8333;QR=1046;QA=620;PQR=2514.83;PQA=1223.83;SRF=22;SRR=8;SAF=14;SAR=6;SRP=17.1973;SAP=9.95901;AB=0.2;ABP=81.1833;RUN=1;RPP=46.4397;RPPR=31.9633;RPL=0.0;RPR=20.0;EPP=9.95901;EPPR=7.64277;DPRA=0.0;ODDS=0.914949;GTI=1;TYPE=del;CIGAR=1M1D23M;NUMALT=3;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.8;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.3597:34:10:343:6:174:-5.39102,-3.76456,-125.369:6:26:23:.:.:1:.:.:.:-0.493592	0/1:1.38434e-05:66:20:703:14:446:-0.924261,0.0,-360.682:14:34:41:.:.:1:.:.:.:-0.0352835
chr16	67131448	.	CAA	C	20.3618	REJECT	NS=2;DP=100;DPB=213.56;AC=2;AN=2;AF=0.0;RO=30;AO=7;PRO=76.3333;PAO=35.5;QR=1046;QA=198;PQR=2514.83;PQA=1124.5;SRF=22;SRR=8;SAF=4;SAR=3;SRP=17.1973;SAP=3.32051;AB=0.07;ABP=163.612;RUN=1;RPP=18.2106;RPPR=31.9633;RPL=0.0;RPR=7.0;EPP=3.32051;EPPR=7.64277;DPRA=0.0;ODDS=0.914949;GTI=1;TYPE=del;CIGAR=1M2D22M;NUMALT=3;MEANALT=18.0;LEN=2;MQM=60.0;MQMR=59.8;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.3597:34:10:343:3:93:-5.39102,-11.87,-147.42:3:13:23:.:.:1:.:.:.:-0.493592	./1:1.38434e-05:66:20:703:4:105:-0.924261,-34.4575,-455.565:4:10:41:.:.:1:.:.:.:-0.0352835
chr16	67131601	.	T	C	2715.955	REJECT	NS=2;DP=477;DPB=547.0;AC=2;AN=4;AF=0.5;RO=413;AO=134;PRO=0.0;PAO=0.0;QR=15587;QA=5030;PQR=0.0;PQA=0.0;SRF=234;SRR=179;SAF=82;SAR=52;SRP=18.9152;SAP=17.5948;AB=0.244973;ABP=312.022;RUN=1;RPP=5.34382;RPPR=7.43211;RPL=61.0;RPR=73.0;EPP=3.26958;EPPR=12.732;DPRA=0.0;ODDS=205.509;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.954;PAIRED=0.992537;PAIREDR=0.997579;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.213;Dels=0.0;FS=1.669;HaplotypeScore=9.8279;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.0295;QD=10.555;ReadPosRankSum=-0.6815;SOR=0.856;ClippingRankSum=0.92	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.198:138:65:2461:75:2794:-213.507,0.0,-183.56:74:54:138:62,74:2491,0,2091:1:.:1:.:.:.:-0.493592	0/1:122.198:407:348:13126:59:2236:-90.9129,0.0,-1070.37:59:14:407:348,59:1301,0,13458:.:1:1:.:.:.:-0.0352835
chr16	67132017	.	TTTTGTTTG	T	612.137	REJECT	NS=2;DP=134;DPB=246.953;AC=2;AN=4;AF=0.5;RO=91;AO=32;PRO=140.5;PAO=96.5;QR=3466;QA=1094;PQR=5209.5;PQA=3574.5;SRF=10;SRR=81;SAF=4;SAR=28;SRP=123.3;SAP=42.0968;AB=0.238806;ABP=82.4149;RUN=1;RPP=4.09604;RPPR=4.17955;RPL=14.0;RPR=18.0;EPP=4.09604;EPPR=3.60686;DPRA=0.0;ODDS=39.241;GTI=0;TYPE=del;CIGAR=1M8D34M;NUMALT=1;MEANALT=6.0;LEN=8;MQM=60.625;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978022;technology.ILLUMINA=1.0;END=67132025;HOMLEN=27;HOMSEQ=TTTGTTTGTTTGTTTGTTTGTTTGTTT;SVLEN=-8;SVTYPE=DEL;BaseQRankSum=1.915;FS=1.632;MLEAC=1;MLEAF=0.5;MQ=60.8;MQRankSum=1.886;QD=10.7;ReadPosRankSum=-0.907;SOR=1.179;ClippingRankSum=0.102	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:35:12:441:16:535:-52.0284,0.0,-43.1453:20:53:38:30,21:754,0,896:1:.:1:1:.:.:-0.493592	0/1:160.002:102:79:3025:16:559:-18.4826,0.0,-387.878:16:17:95:.:.:.:.:1:.:.:.:-0.0352835
chr16	68857441	.	T	C	6049.280000000001	REJECT	NS=2;DP=361;DPB=408.0;AC=2;AN=4;AF=0.5;RO=196;AO=212;PRO=0.0;PAO=0.0;QR=7440;QA=8109;PQR=0.0;PQA=0.0;SRF=94;SRR=102;SAF=87;SAR=125;SRP=3.71935;SAP=17.8009;AB=0.519608;ABP=4.37279;RUN=1;RPP=3.05127;RPPR=5.84651;RPL=107.0;RPR=105.0;EPP=26.6097;EPPR=4.60567;DPRA=0.0;ODDS=267.434;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995283;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.55;Dels=0.0;FS=5.178;HaplotypeScore=8.9095;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.082;QD=18.46;ReadPosRankSum=0.0745;SOR=1.046;ClippingRankSum=-1.419	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.562:91:43:1570:49:1852:-141.817,0.0,-116.414:48:53:91:42,48:1635,0,1361:1:.:1:.:.:.:-8.39515e-05	0/1:118.562:315:153:5870:163:6257:-477.201,0.0,-442.414:162:51:315:153,162:6036,0,5624:.:1:1:.:.:.:-0.0352835
chr16	72821381	.	A	G	237.8	REJECT	NS=2;DP=412;DPB=412.0;AC=2;AN=4;AF=0.5;RO=274;AO=135;PRO=0.0;PAO=0.0;QR=7574;QA=2345;PQR=0.0;PQA=0.0;SRF=190;SRR=84;SAF=3;SAR=132;SRP=92.0565;SAP=270.68;AB=0.32767;ABP=109.286;RUN=1;RPP=173.656;RPPR=3.2956;RPL=16.0;RPR=119.0;EPP=180.347;EPPR=4.56362;DPRA=0.0;ODDS=26.0322;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=57.563;MQMR=59.9818;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=1;BaseQRankSum=-9.004;Dels=0.0;FS=143.031;HaplotypeScore=69.9734;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-1.858;QD=0.61;ReadPosRankSum=-2.168;SOR=6.78	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.006:117:73:1887:42:748:-37.7252,0.0,-139.995:42:37:115:.:.:.:.:1:.:.:.:-8.39515e-05	0/1:115.6855:295:201:5687:93:1597:-64.8189,0.0,-434.543:93:32:294:201,94:210,0,5129:.:1:1:.:.:.:-0.0352835
chr16	72821625	.	C	T	3878.54	REJECT	NS=2;DP=256;DPB=295.0;AC=2;AN=4;AF=0.5;RO=148;AO=147;PRO=0.0;PAO=0.0;QR=5438;QA=5548;PQR=0.0;PQA=0.0;SRF=59;SRR=89;SAF=72;SAR=75;SRP=16.2152;SAP=3.14325;AB=0.498305;ABP=3.01766;RUN=1;RPP=4.20683;RPPR=7.76406;RPL=69.0;RPR=78.0;EPP=4.20683;EPPR=6.76636;DPRA=0.0;ODDS=193.979;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4465;Dels=0.0;FS=4.9445;HaplotypeScore=8.7569;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4755;QD=18.805;ReadPosRankSum=-0.101;SOR=0.723;ClippingRankSum=0.243	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:31:1173:46:1737:-135.537,0.0,-84.7488:45:59:76:31,45:1619,0,1052:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:217:117:4265:101:3811:-284.293,0.0,-324.65:101:46:217:116,101:3648,0,4012:.:1:1:.:.:.:-0.0352835
chr16	72822012	.	TGCTGCTGCTGCTGTAGTTGCC	T	1577.71	REJECT	NS=2;DP=178;DPB=166.609;AC=2;AN=4;AF=0.5;RO=95;AO=81;PRO=122.0;PAO=6.0;QR=3640;QA=2710;PQR=4475.5;PQA=146.5;SRF=54;SRR=41;SAF=48;SAR=33;SRP=6.87324;SAP=9.04217;AB=0.455056;ABP=6.13332;RUN=1;RPP=12.6881;RPPR=3.03316;RPL=31.0;RPR=50.0;EPP=3.03711;EPPR=8.15326;DPRA=0.0;ODDS=66.8749;GTI=0;TYPE=del;CIGAR=1M21D1M;NUMALT=1;MEANALT=1.5;LEN=21;MQM=62.0988;MQMR=60.0;PAIRED=1.0;PAIREDR=0.978947;technology.ILLUMINA=1.0;MQ0=0;END=72822033;HOMLEN=13;HOMSEQ=GCTGCTGCTGCTG;SVLEN=-21;SVTYPE=DEL;BaseQRankSum=1.7275;FS=4.0125;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=0.5825;QD=11.415;ReadPosRankSum=1.478;SOR=0.9125;ClippingRankSum=0.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.8935:55:24:912:16:557:-30.1047,0.0,-176.191:31:44:70:38,53:1188,0,6530:1:.:1:1:.:.:-8.39515e-05	0/1:122.8935:174:71:2728:65:2153:-134.695,0.0,-461.964:66:48:148:90,122:12514,0,15967:.:1:1:1:.:.:-0.0352835
chr16	72827758	.	T	C	12914.15	REJECT	NS=2;DP=346;DPB=399.0;AC=4;AN=4;AF=1.0;RO=1;AO=397;PRO=0.0;PAO=0.0;QR=14;QA=15028;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=226;SAR=171;SRP=5.18177;SAP=19.5562;AB=0.0;ABP=0.0;RUN=1;RPP=9.71069;RPPR=5.18177;RPL=181.0;RPR=216.0;EPP=20.7814;EPPR=5.18177;DPRA=0.0;ODDS=68.3794;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987406;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.664;Dels=0.0;FS=1.9055;HaplotypeScore=2.966;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.629;QD=26.47;ReadPosRankSum=-1.458;SOR=0.8945;ClippingRankSum=-0.909	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:1:14:103:3886:-348.541,-26.9186,0.0:101:99:102:1,100:4139,294,0:1:.:1:.:.:.:-8.39515e-05	1/1:129.501:294:0:0:294:11142:-1002.2,-79.6009,0.0:293:100:293:0,293:12423,870,0:.:1:1:.:.:.:-0.0352835
chr16	72830425	.	C	T	1749.14	PASS	SOMATIC;NS=2;DP=280;DPB=280.0;AC=2;AN=3;AF=0.25;RO=189;AO=75;PRO=0.0;PAO=0.0;QR=6471;QA=2612;PQR=0.0;PQA=0.0;SRF=130;SRR=59;SAF=47;SAR=28;SRP=60.9277;SAP=13.4623;AB=0.348837;ABP=45.6823;RUN=1;RPP=3.03925;RPPR=11.386;RPL=38.0;RPR=37.0;EPP=13.4623;EPPR=5.59539;DPRA=3.30769;ODDS=34.8041;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994709;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;VT=SNP;BaseQRankSum=-1.705;Dels=0.0;FS=4.565;HaplotypeScore=18.2977;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.296;QD=10.49;ReadPosRankSum=1.053;SOR=0.42	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.971:61:62:2073:0:0:0.0,-15.933,-185.852:0:0:60:56,0:.:0.0:0:.:.:.:1:.:.:0:-8.39515e-05	0/1:119.3225:215:127:4398:75:2612:-181.988,0.0,-341.034:75:37:202:123,73:35.0:0.374:2:2283,0,4215:.:1:1:.:.:1:-0.0352835
chr16	72830425	.	C	G	1749.14	REJECT	NS=2;DP=280;DPB=280.0;AC=2;AN=2;AF=0.0;RO=189;AO=15;PRO=0.0;PAO=0.0;QR=6471;QA=109;PQR=0.0;PQA=0.0;SRF=130;SRR=59;SAF=0;SAR=15;SRP=60.9277;SAP=35.5824;AB=0.0604651;ABP=363.788;RUN=1;RPP=35.5824;RPPR=11.386;RPL=0.0;RPR=15.0;EPP=35.5824;EPPR=5.59539;DPRA=0.0;ODDS=34.8041;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=59.8;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994709;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.971:65:62:2073:2:31:0.0,-13.6809,-183.08:2:3:64:.:.:1:.:.:.:-8.39515e-05	./1:139.645:215:127:4398:13:78:-181.988,-211.209,-572.529:13:6:215:.:.:1:.:.:.:-0.0352835
chr16	72832135	.	T	A	10873.5	REJECT	NS=2;DP=285;DPB=328.0;AC=4;AN=4;AF=1.0;RO=0;AO=328;PRO=0.0;PAO=0.0;QR=0;QA=12646;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=171;SAR=157;SRP=0.0;SAP=4.30789;AB=0.0;ABP=0.0;RUN=1;RPP=3.67233;RPPR=0.0;RPL=159.0;RPR=169.0;EPP=3.11623;EPPR=0.0;DPRA=0.0;ODDS=57.3757;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996951;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9326;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.995;SOR=1.0885	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9575:84:0:0:85:3261:-293.588,-23.0429,0.0:84:100:84:0,84:3573,252,0:1:.:1:.:.:.:-8.39515e-05	1/1:124.9575:242:0:0:243:9385:-844.205,-65.8217,0.0:242:100:242:0,242:10440,719,0:.:1:1:.:.:.:-0.0352835
chr16	72991660	.	C	G	13698.25	REJECT	NS=2;DP=367;DPB=424.0;AC=4;AN=4;AF=1.0;RO=0;AO=424;PRO=0.0;PAO=0.0;QR=0;QA=16051;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=205;SAR=219;SRP=0.0;SAP=4.01409;AB=0.0;ABP=0.0;RUN=1;RPP=28.1051;RPPR=0.0;RPL=247.0;RPR=177.0;EPP=9.64763;EPPR=0.0;DPRA=0.0;ODDS=74.7814;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9929;MQMR=0.0;PAIRED=0.995283;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.709;MLEAC=2;MLEAF=1.0;MQ=59.995;QD=22.465;SOR=0.751	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:112:0:0:113:4248:-382.319,-30.6021,0.0:112:100:112:0,112:4621,336,0:1:.:1:.:.:.:-8.39515e-05	1/1:129.501:310:0:0:311:11803:-1061.56,-84.1632,0.0:310:100:310:0,310:13061,906,0:.:1:1:.:.:.:-0.0352835
chr16	72991715	.	A	G	11901.75	REJECT	NS=2;DP=319;DPB=368.0;AC=4;AN=4;AF=1.0;RO=0;AO=368;PRO=0.0;PAO=0.0;QR=0;QA=13979;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=182;SRP=0.0;SAP=3.10471;AB=0.0;ABP=0.0;RUN=1;RPP=5.3706;RPPR=0.0;RPL=174.0;RPR=194.0;EPP=12.4515;EPPR=0.0;DPRA=0.0;ODDS=68.5236;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9918;MQMR=0.0;PAIRED=0.991848;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.02;FS=0.0;HaplotypeScore=20.3487;MLEAC=2;MLEAF=1.0;MQ=59.995;QD=31.1;SOR=0.722	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:103:3875:-348.764,-27.8844,0.0:102:100:102:0,101:4253,303,0:1:.:1:.:.:.:-8.39515e-05	1/1:129.501:265:0:0:265:10104:-908.836,-71.7412,0.0:265:100:265:0,265:11309,786,0:.:1:1:.:.:.:-0.0352835
chr16	72993860	.	G	A	1858.62	PASS	SOMATIC;NS=2;DP=302;DPB=302.0;AC=1;AN=3;AF=0.25;RO=229;AO=73;PRO=0.0;PAO=0.0;QR=8597;QA=2774;PQR=0.0;PQA=0.0;SRF=139;SRR=90;SAF=45;SAR=28;SRP=25.7776;SAP=11.607;AB=0.347619;ABP=45.3644;RUN=1;RPP=11.607;RPPR=4.61283;RPL=28.0;RPR=45.0;EPP=4.46786;EPPR=4.61283;DPRA=2.28261;ODDS=57.4986;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.448;Dels=0.0;FS=4.198;HaplotypeScore=3.8073;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.911;QD=11.58;ReadPosRankSum=-0.811;SOR=1.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:151.764:91:92:3405:0:0:0.0,-24.5454,-306.159:0:0:91:91,0:.:0.0:0:.:.:.:0:.:.:0:-8.39515e-05	0/1:125.382:210:137:5192:73:2774:-192.686,0.0,-410.224:73:35:210:135,72:37.0:0.348:2:2461,0,5188:.:1:1:.:.:1:-0.0352835
chr16	75007460	.	CA	C	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:53,0:53:0.0943396,0.0:60.0,0.0:38.6096,0.0:0.0,0.0:0,0:0,0:41,12,0,0:0:0:53:.:.:.:.:0:.:-8.39515e-05	0/1:105,69:174:0.104762,1.05797:60.0,60.1449:38.4902,38.1686:0.00292969,0.101173:66,17:34,17:73,32,50,19:69:40:174:.:.:.:.:1:.:-0.0352835
chr16	75007466	.	G	A	2020.32	PASS	SOMATIC;NS=2;DP=249;DPB=249.0;AC=1;AN=4;AF=0.25;RO=173;AO=76;PRO=0.0;PAO=0.0;QR=6717;QA=2928;PQR=0.0;PQA=0.0;SRF=123;SRR=50;SAF=54;SAR=22;SRP=69.8992;SAP=32.268;AB=0.397906;ABP=20.3025;RUN=1;RPP=16.8392;RPPR=77.4303;RPL=27.0;RPR=49.0;EPP=5.8675;EPPR=3.02285;DPRA=3.2931;ODDS=37.2239;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1316;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.317;Dels=0.0;FS=0.595;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.175;QD=13.99;ReadPosRankSum=1.627;SOR=0.843	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:135.955:58:58:2244:0:0:0.0,-15.7402,-202.158:0:0:58:.:.:.:.:0:.:.:.:-8.39515e-05	0/1:129.501:191:115:4473:76:2928:-211.671,0.0,-350.655:76:40:191:115,76:2701,0,4432:.:1:1:.:.:.:-0.0352835
chr16	76501609	.	C	A	2764.01	PASS	SOMATIC;NS=2;DP=391;DPB=391.0;AC=1;AN=3;AF=0.25;RO=287;AO=103;PRO=0.0;PAO=0.0;QR=10826;QA=4021;PQR=0.0;PQA=0.0;SRF=183;SRR=104;SAF=64;SAR=39;SRP=50.2304;SAP=16.1867;AB=0.363958;ABP=48.5038;RUN=1;RPP=4.04333;RPPR=9.3734;RPL=48.0;RPR=55.0;EPP=23.2703;EPPR=10.2813;DPRA=2.62037;ODDS=67.6678;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.993031;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.718;Dels=0.0;FS=0.466;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.446;QD=13.04;ReadPosRankSum=0.819;SOR=0.626	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.949:103:107:4033:0:0:0.0,-28.9618,-362.954:0:0:102:97,0:.:0.0:0:.:.:.:0:.:.:0:-8.39515e-05	0/1:120.4745:282:180:6793:103:4021:-285.05,0.0,-534.374:103:36:282:174,96:39.0:0.345:2:3705,0,6651:.:1:1:.:.:1:-0.0352835
chr16	76501643	.	C	T	3193.99	PASS	SOMATIC;NS=2;DP=435;DPB=435.0;AC=1;AN=3;AF=0.25;RO=317;AO=118;PRO=0.0;PAO=0.0;QR=12008;QA=4598;PQR=0.0;PQA=0.0;SRF=165;SRR=152;SAF=54;SAR=64;SRP=4.16796;SAP=4.85053;AB=0.37224;ABP=47.9536;RUN=1;RPP=3.0103;RPPR=4.98997;RPL=59.0;RPR=59.0;EPP=38.6372;EPPR=72.8879;DPRA=2.68644;ODDS=74.5704;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991525;PAIREDR=0.996845;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.754;Dels=0.0;FS=6.114;HaplotypeScore=3.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.462;QD=13.22;ReadPosRankSum=-0.43;SOR=0.773	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:113:118:4456:0:0:0.0,-31.9596,-401.02:0:0:113:109,0:.:0.0:0:.:.:.:0:.:.:0:-8.39515e-05	0/1:129.501:317:199:7552:118:4598:-328.48,0.0,-593.4:118:37:317:190,108:38.0:0.352:2:4219,0,7504:.:1:1:.:.:1:-0.0352835
chr16	89805261	.	A	G	10249.335	REJECT	NS=2;DP=426;DPB=499.0;AC=3;AN=4;AF=0.75;RO=126;AO=373;PRO=0.0;PAO=0.0;QR=4824;QA=14209;PQR=0.0;PQA=0.0;SRF=72;SRR=54;SAF=208;SAR=165;SRP=8.59409;SAP=13.7745;AB=0.644068;ABP=66.8295;RUN=1;RPP=5.11191;RPPR=14.6604;RPL=177.0;RPR=196.0;EPP=5.57764;EPPR=4.73369;DPRA=0.0;ODDS=91.2547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994638;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.813;Dels=0.0;FS=0.4265;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.077;QD=27.18;ReadPosRankSum=0.509;SOR=0.819	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:143:0:0:145:5442:-489.598,-39.2055,0.0:143:100:143:0,141:5698,421,0:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:354:126:4824:228:8767:-692.665,0.0,-337.984:228:64:354:126,228:8780,0,4311:.:1:1:.:.:.:-0.0352835
chr16	89805977	.	G	A	4408.18	REJECT	NS=2;DP=284;DPB=325.0;AC=2;AN=4;AF=0.5;RO=168;AO=157;PRO=0.0;PAO=0.0;QR=6415;QA=6045;PQR=0.0;PQA=0.0;SRF=47;SRR=121;SAF=46;SAR=111;SRP=73.79;SAP=61.4464;AB=0.483077;ABP=3.81876;RUN=1;RPP=33.5631;RPPR=16.2459;RPL=102.0;RPR=55.0;EPP=3.68802;EPPR=4.30284;DPRA=0.0;ODDS=233.986;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987261;PAIREDR=0.994048;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.021;Dels=0.0;FS=0.5475;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.392;QD=16.4;ReadPosRankSum=-1.171;SOR=0.6385;ClippingRankSum=0.586	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:80:45:1669:37:1418:-105.462,0.0,-128.05:36:45:80:43,36:1182,0,1515:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:243:123:4746:120:4627:-350.38,0.0,-361.099:120:49:243:123,120:4450,0,4604:.:1:1:.:.:.:-0.0352835
chr16	89806347	.	A	T	6140.765	REJECT	NS=2;DP=366;DPB=414.0;AC=2;AN=4;AF=0.5;RO=199;AO=215;PRO=0.0;PAO=0.0;QR=7563;QA=8406;PQR=0.0;PQA=0.0;SRF=121;SRR=78;SAF=127;SAR=88;SRP=23.1864;SAP=18.3722;AB=0.519324;ABP=4.35305;RUN=1;RPP=3.50519;RPPR=5.46548;RPL=111.0;RPR=104.0;EPP=3.2628;EPPR=3.2831;DPRA=0.0;ODDS=233.95;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.127;Dels=0.0;FS=1.836;HaplotypeScore=5.9656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.053;QD=20.365;ReadPosRankSum=-0.1435;SOR=0.7555;ClippingRankSum=-1.584	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:37:1419:58:2268:-178.395,0.0,-101.985:58:61:95:37,58:2135,0,1309:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:319:162:6144:157:6138:-465.688,0.0,-466.202:157:49:319:162,157:5946,0,5868:.:1:1:.:.:.:-0.0352835
chr16	89815217	.	C	T	2937.08	REJECT	NS=2;DP=167;DPB=189.0;AC=2;AN=4;AF=0.5;RO=82;AO=107;PRO=0.0;PAO=0.0;QR=3132;QA=4050;PQR=0.0;PQA=0.0;SRF=26;SRR=56;SAF=44;SAR=63;SRP=26.8435;SAP=10.3365;AB=0.566138;ABP=10.1911;RUN=1;RPP=123.334;RPPR=140.29;RPL=92.0;RPR=15.0;EPP=3.51765;EPPR=30.1272;DPRA=0.0;ODDS=100.109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.443;Dels=0.0;FS=2.63;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.687;QD=20.245;ReadPosRankSum=1.629;SOR=0.4575;ClippingRankSum=-0.128	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.672:42:18:673:25:924:-71.63,0.0,-49.0127:25:59:42:17,25:868,0,590:1:.:1:.:.:.:-8.39515e-05	0/1:120.672:145:64:2459:82:3126:-241.719,0.0,-181.723:81:56:145:64,81:3001,0,2334:.:1:1:.:.:.:-0.0352835
chr16	89831510	.	C	A	1246.77	REJECT	NS=2;DP=192;DPB=221.0;AC=2;AN=4;AF=0.5;RO=163;AO=57;PRO=0.0;PAO=0.0;QR=6204;QA=2219;PQR=0.0;PQA=0.0;SRF=55;SRR=108;SAF=23;SAR=34;SRP=40.4316;SAP=7.61992;AB=0.257919;ABP=115.504;RUN=1;RPP=87.1644;RPPR=191.662;RPL=52.0;RPR=5.0;EPP=9.44853;EPPR=8.88527;DPRA=0.0;ODDS=72.8679;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993865;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0835;Dels=0.0;FS=2.107;HaplotypeScore=5.9286;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1825;QD=12.4;ReadPosRankSum=0.2465;SOR=0.446;ClippingRankSum=-0.071	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:58:24:906:34:1326:-103.723,0.0,-65.8786:34:59:58:24,34:1313,0,836:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:163:139:5298:23:893:-36.8416,0.0,-432.797:23:14:162:139,23:521,0,5453:.:1:1:.:.:.:-0.0352835
chr16	89836323	.	C	T	5465.605	REJECT	NS=2;DP=352;DPB=401.0;AC=2;AN=4;AF=0.5;RO=205;AO=196;PRO=0.0;PAO=0.0;QR=7875;QA=7413;PQR=0.0;PQA=0.0;SRF=86;SRR=119;SAF=96;SAR=100;SRP=14.5456;SAP=3.18756;AB=0.488778;ABP=3.44893;RUN=1;RPP=24.4591;RPPR=26.4092;RPL=120.0;RPR=76.0;EPP=9.39177;EPPR=7.68161;DPRA=0.0;ODDS=282.297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7915;Dels=0.0;FS=4.5975;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4665;QD=16.695;ReadPosRankSum=0.253;SOR=0.5155;ClippingRankSum=0.316	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:54:2039:44:1675:-124.238,0.0,-156.978:43:45:96:52,42:1481,0,1861:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:303:151:5836:152:5738:-434.048,0.0,-442.881:152:50:303:151,152:5465,0,5642:.:1:1:.:.:.:-0.0352835
chr16	89838078	.	A	G	4110.435	REJECT	NS=2;DP=271;DPB=315.0;AC=2;AN=4;AF=0.5;RO=160;AO=155;PRO=0.0;PAO=0.0;QR=6103;QA=5945;PQR=0.0;PQA=0.0;SRF=116;SRR=44;SAF=105;SAR=50;SRP=73.366;SAP=45.389;AB=0.492063;ABP=3.18264;RUN=1;RPP=26.5603;RPPR=10.8276;RPL=57.0;RPR=98.0;EPP=3.36054;EPPR=20.5992;DPRA=0.0;ODDS=233.272;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1685;Dels=0.0;FS=3.7;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.264;QD=18.145;ReadPosRankSum=1.7905;SOR=0.4345;ClippingRankSum=1.217	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:38:1432:50:1905:-147.653,0.0,-105.072:50:57:88:38,50:1749,0,1338:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:227:122:4671:105:4040:-301.945,0.0,-358.703:105:46:227:122,105:3879,0,4534:.:1:1:.:.:.:-0.0352835
chr16	89845194	.	A	G	4672.25	REJECT	NS=2;DP=328;DPB=390.0;AC=2;AN=4;AF=0.5;RO=207;AO=183;PRO=0.0;PAO=0.0;QR=7943;QA=6806;PQR=0.0;PQA=0.0;SRF=123;SRR=84;SAF=125;SAR=58;SRP=18.9659;SAP=56.2766;AB=0.469231;ABP=6.2174;RUN=1;RPP=17.5461;RPPR=11.8326;RPL=74.0;RPR=109.0;EPP=3.30695;EPPR=6.79726;DPRA=0.0;ODDS=328.802;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978142;PAIREDR=0.937198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.453;Dels=0.0;FS=5.938;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6255;QD=15.385;ReadPosRankSum=1.6205;SOR=1.2405;ClippingRankSum=0.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:60:2338:53:1959:-145.69,0.0,-179.823:52:48:109:54,51:1604,0,2003:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:271:147:5605:130:4847:-360.979,0.0,-429.197:128:47:271:139,127:4435,0,5150:.:1:1:.:.:.:-0.0352835
chr16	89849480	.	C	T	9735.085	REJECT	NS=2;DP=387;DPB=444.0;AC=3;AN=4;AF=0.75;RO=106;AO=337;PRO=0.0;PAO=0.0;QR=4084;QA=13063;PQR=0.0;PQA=0.0;SRF=50;SRR=56;SAF=114;SAR=223;SRP=3.74778;SAP=79.566;AB=0.683735;ABP=100.36;RUN=1;RPP=9.20254;RPPR=5.05886;RPL=184.0;RPR=153.0;EPP=8.42932;EPPR=3.09224;DPRA=0.0;ODDS=69.8401;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997033;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.281;Dels=0.0;FS=5.712;HaplotypeScore=5.9324;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.797;QD=27.115;ReadPosRankSum=0.061;SOR=1.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.629:111:1:2:110:4290:-386.322,-29.9162,0.0:110:99:110:0,110:4627,331,0:1:.:1:.:.:.:-8.39515e-05	0/1:119.629:331:105:4082:227:8773:-699.126,0.0,-277.211:226:68:331:105,226:8793,0,3593:.:1:1:.:.:.:-0.0352835
chr16	89857964	.	T	C	3483.0150000000003	REJECT	NS=2;DP=221;DPB=259.0;AC=2;AN=4;AF=0.5;RO=128;AO=131;PRO=0.0;PAO=0.0;QR=4843;QA=5046;PQR=0.0;PQA=0.0;SRF=39;SRR=89;SAF=37;SAR=94;SRP=45.4219;SAP=56.8661;AB=0.505792;ABP=3.08576;RUN=1;RPP=53.1531;RPPR=27.5072;RPL=93.0;RPR=38.0;EPP=3.4247;EPPR=4.09604;DPRA=0.0;ODDS=221.011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5885;Dels=0.0;FS=1.0865;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.376;QD=18.84;ReadPosRankSum=0.052;SOR=0.9065;ClippingRankSum=0.363	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.545:75:34:1298:42:1585:-122.113,0.0,-96.2924:41:54:75:34,40:1485,0,1160:1:.:1:.:.:.:-8.39515e-05	0/1:121.545:183:94:3545:89:3461:-261.784,0.0,-269.384:89:49:183:94,89:3320,0,3428:.:1:1:.:.:.:-0.0352835
chr16	89866043	.	T	C	6019.1900000000005	REJECT	NS=2;DP=359;DPB=419.0;AC=2;AN=4;AF=0.5;RO=196;AO=223;PRO=0.0;PAO=0.0;QR=7488;QA=8448;PQR=0.0;PQA=0.0;SRF=97;SRR=99;SAF=101;SAR=122;SRP=3.05462;SAP=7.30456;AB=0.53222;ABP=6.78835;RUN=1;RPP=3.09794;RPPR=4.11819;RPL=113.0;RPR=110.0;EPP=21.015;EPPR=7.44188;DPRA=0.0;ODDS=334.383;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991031;PAIREDR=0.984694;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.026;Dels=0.0;FS=1.7155;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.05;QD=18.32;ReadPosRankSum=0.4925;SOR=0.845;ClippingRankSum=-0.99	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:51:1973:65:2513:-194.727,0.0,-146.132:65:56:115:50,65:2091,0,1742:1:.:1:.:.:.:-8.39515e-05	0/1:129.501:301:145:5515:158:5935:-451.794,0.0,-414.43:157:52:301:143,157:5685,0,5177:.:1:1:.:.:.:-0.0352835
chr16	89869761	.	T	C	6301.22	REJECT	NS=2;DP=261;DPB=295.0;AC=3;AN=4;AF=0.75;RO=72;AO=222;PRO=0.0;PAO=0.0;QR=2741;QA=8446;PQR=0.0;PQA=0.0;SRF=15;SRR=57;SAF=47;SAR=175;SRP=56.2114;SAP=163.269;AB=0.681223;ABP=68.3346;RUN=1;RPP=48.2395;RPPR=20.3821;RPL=145.0;RPR=77.0;EPP=3.04943;EPPR=6.02623;DPRA=0.0;ODDS=42.1818;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986486;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.466;Dels=0.0;FS=0.318;HaplotypeScore=9.7168;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.113;QD=24.855;ReadPosRankSum=0.381;SOR=1.857	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.3285:66:0:0:66:2527:-227.582,-17.8934,0.0:66:100:66:0,66:2792,198,0:1:.:1:.:.:.:-8.39515e-05	0/1:120.3285:228:72:2741:156:5919:-470.724,0.0,-184.822:155:68:227:72,155:5920,0,2389:.:1:1:.:.:.:-0.0352835
chr16	89882807	.	G	T	1433.63	REJECT	NS=1;DP=99;DPB=99.0;AC=1;AN=4;AF=0.5;RO=43;AO=55;PRO=0.0;PAO=0.0;QR=1616;QA=1955;PQR=0.0;PQA=0.0;SRF=23;SRR=20;SAF=29;SAR=26;SRP=3.46479;SAP=3.36563;AB=0.555556;ABP=5.66432;RUN=1;RPP=17.2631;RPPR=11.5447;RPL=18.0;RPR=37.0;EPP=3.99733;EPPR=5.48477;DPRA=0.0;ODDS=260.361;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.963636;PAIREDR=0.976744;technology.ILLUMINA=1.0;BaseQRankSum=-1.237;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.378;QD=22.11;ReadPosRankSum=0.363;SOR=0.659;ClippingRankSum=-0.178	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:43:1616:55:1955:-149.834,0.0,-118.959:55:56:97:41,55:2151,0,2529:1:.:1:.:.:.:-8.39515e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-1.09122
chr16	89882826	.	C	T	1695.79	REJECT	NS=1;DP=103;DPB=103.0;AC=1;AN=4;AF=0.5;RO=43;AO=60;PRO=0.0;PAO=0.0;QR=1587;QA=2266;PQR=0.0;PQA=0.0;SRF=21;SRR=22;SAF=27;SAR=33;SRP=3.0608;SAP=4.31318;AB=0.582524;ABP=9.10307;RUN=1;RPP=14.7363;RPPR=14.3727;RPL=21.0;RPR=39.0;EPP=5.32654;EPPR=4.27278;DPRA=0.0;ODDS=250.867;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.966667;PAIREDR=0.976744;technology.ILLUMINA=1.0;BaseQRankSum=0.867;FS=1.619;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.813;QD=22.04;ReadPosRankSum=-0.629;SOR=0.906;ClippingRankSum=1.424	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:102:43:1587:60:2266:-176.073,0.0,-114.963:60:58:102:42,60:2276,0,2593:1:.:1:.:.:.:-8.39515e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-1.09122
chr17	1249777	.	A	G	8559.67	REJECT	NS=2;DP=560;DPB=645.0;AC=2;AN=4;AF=0.5;RO=339;AO=306;PRO=0.0;PAO=0.0;QR=12706;QA=11762;PQR=0.0;PQA=0.0;SRF=193;SRR=146;SAF=155;SAR=151;SRP=17.1601;SAP=3.12384;AB=0.474419;ABP=6.67655;RUN=1;RPP=3.03869;RPPR=3.78537;RPL=154.0;RPR=152.0;EPP=3.46446;EPPR=5.32269;DPRA=0.0;ODDS=513.499;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996732;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.5175;Dels=0.0;FS=9.115;HaplotypeScore=6.8876;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3655;QD=17.225;ReadPosRankSum=1.0495;SOR=0.7855;ClippingRankSum=-0.936	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.7985:166:89:3364:78:2984:-223.238,0.0,-257.455:77:47:166:88,77:2819,0,3138:1:.:1:.:.:.:-0.0664495	0/1:119.7985:477:250:9342:228:8778:-660.003,0.0,-710.79:228:48:477:248,228:8379,0,8954:.:1:1:.:.:.:-0.107524
chr17	1250465	.	CAA	C	14.4429	REJECT	SOMATIC;NS=1;DP=6;DPB=9.48;AC=1;AN=4;AF=0.5;RO=1;AO=3;PRO=3.0;PAO=4.0;QR=33;QA=32;PQR=103.5;PQA=138.5;SRF=1;SRR=0;SAF=1;SAR=2;SRP=5.18177;SAP=3.73412;AB=0.5;ABP=3.0103;RUN=1;RPP=9.52472;RPPR=5.18177;RPL=3.0;RPR=0.0;EPP=3.73412;EPPR=5.18177;DPRA=0.0;ODDS=1.05638;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=1;MEANALT=3.0;LEN=2;MQM=27.3333;MQMR=60.0;PAIRED=0.666667;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0664495	0/1:1.24201:6:1:33:3:32:-4.59503,0.0,-2.44431:3:75:4:.:.:1:.:.:.:-0.107524
chr17	1250625	.	C	CA	223.229	REJECT	NS=2;DP=60;DPB=75.0;AC=2;AN=4;AF=0.5;RO=31;AO=14;PRO=11.8333;PAO=10.8333;QR=1077;QA=508;PQR=429.5;PQA=392.5;SRF=30;SRR=1;SAF=14;SAR=0;SRP=61.9202;SAP=33.4109;AB=0.233333;ABP=40.0701;RUN=1;RPP=18.5208;RPPR=14.8483;RPL=2.0;RPR=12.0;EPP=18.5208;EPPR=11.486;DPRA=0.0;ODDS=13.9072;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.244;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.38;QD=5.15;ReadPosRankSum=0.135;SOR=1.022;ClippingRankSum=-1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:90.07315:14:5:166:6:213:-16.2673,0.0,-12.0171:6:46:14:8,7:130,0,115:1:.:1:.:.:.:-0.0664495	0/1:60.3984:46:26:911:8:295:-17.0818,0.0,-75.9236:8:20:41:.:.:.:.:1:.:.:.:-0.107524
chr17	1250625	.	CA	C	223.229	REJECT	NS=2;DP=60;DPB=75.0;AC=2;AN=2;AF=0.0;RO=31;AO=9;PRO=11.8333;PAO=10.3333;QR=1077;QA=311;PQR=429.5;PQA=374.0;SRF=30;SRR=1;SAF=9;SAR=0;SRP=61.9202;SAP=22.5536;AB=0.15;ABP=66.8516;RUN=1;RPP=22.5536;RPPR=14.8483;RPL=0.0;RPR=9.0;EPP=22.5536;EPPR=11.486;DPRA=0.0;ODDS=13.9072;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=57.7778;MQMR=60.0;PAIRED=1.0;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:81.1463:14:5:166:2:54:-16.2673,-13.2891,-26.4075:2:15:13:.:.:1:.:.:.:-0.0664495	./1:60.3984:46:26:911:7:257:-17.0818,-3.82272,-86.142:7:17:41:.:.:1:.:.:.:-0.107524
chr17	1252321	.	C	G	286.932	REJECT	NS=2;DP=24;DPB=24.0;AC=2;AN=4;AF=0.5;RO=11;AO=13;PRO=0.0;PAO=0.0;QR=335;QA=446;PQR=0.0;PQA=0.0;SRF=3;SRR=8;SAF=6;SAR=7;SRP=7.94546;SAP=3.17734;AB=0.541667;ABP=3.37221;RUN=1;RPP=11.1951;RPPR=3.20771;RPL=10.0;RPR=3.0;EPP=4.51363;EPPR=4.78696;DPRA=0.0;ODDS=11.1899;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.358;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.231;QD=9.15;ReadPosRankSum=0.358;SOR=1.609;ClippingRankSum=-1.231	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61.2985:5:4:149:2:75:-5.2149,0.0,-11.9931:2:36:5:3,2:74,0,115:1:.:1:.:.:.:-0.0664495	0/1:113.883:18:7:186:11:371:-28.7191,0.0,-11.9396:11:61:18:.:.:.:.:1:.:.:.:-0.107524
chr17	1252330	.	GA	G	57.7769	REJECT	NS=2;DP=18;DPB=23.1111;AC=2;AN=4;AF=0.5;RO=8;AO=5;PRO=7.5;PAO=3.5;QR=275;QA=163;PQR=237.0;PQA=119.0;SRF=6;SRR=2;SAF=2;SAR=3;SRP=7.35324;SAP=3.44459;AB=0.277778;ABP=10.7311;RUN=1;RPP=6.91895;RPPR=7.35324;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=7.35324;DPRA=0.0;ODDS=5.04299;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:25.2054:7:2:58:3:94:-7.21353,0.0,-3.93582:3:60:5:.:.:1:.:.:.:-0.0664495	0/1:21.9413:11:6:217:2:69:-2.97859,0.0,-27.0239:2:25:8:.:.:1:.:.:.:-0.107524
chr17	1252536	.	C	T	2149.6	REJECT	NS=2;DP=159;DPB=179.0;AC=2;AN=4;AF=0.5;RO=92;AO=87;PRO=0.0;PAO=0.0;QR=3487;QA=3246;PQR=0.0;PQA=0.0;SRF=92;SRR=0;SAF=86;SAR=1;SRP=202.786;SAP=183.342;AB=0.486034;ABP=3.31358;RUN=1;RPP=3.63429;RPPR=6.40913;RPL=41.0;RPR=46.0;EPP=3.23494;EPPR=6.40913;DPRA=0.0;ODDS=110.078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.965517;PAIREDR=0.978261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.452;Dels=0.0;FS=1.6175;HaplotypeScore=4.7738;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4035;QD=16.845;ReadPosRankSum=0.5325;SOR=0.4635;ClippingRankSum=0.501	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.833:38:19:719:20:731:-55.3375,0.0,-54.2496:19:51:38:18,19:660,0,643:1:.:1:.:.:.:-0.0664495	0/1:125.833:139:73:2768:67:2515:-188.396,0.0,-211.164:66:47:139:73,66:2339,0,2686:.:1:1:.:.:.:-0.107524
chr17	1252843	.	T	G	6887.51	REJECT	NS=2;DP=469;DPB=542.0;AC=2;AN=4;AF=0.5;RO=288;AO=253;PRO=0.0;PAO=0.0;QR=10829;QA=9507;PQR=0.0;PQA=0.0;SRF=108;SRR=180;SAF=96;SAR=157;SRP=42.0968;SAP=34.9473;AB=0.46679;ABP=8.2026;RUN=1;RPP=4.46081;RPPR=11.7263;RPL=120.0;RPR=133.0;EPP=8.37461;EPPR=13.8978;DPRA=0.0;ODDS=399.294;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.1581;MQMR=59.9861;PAIRED=1.0;PAIREDR=0.986111;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8155;Dels=0.0;FS=2.913;HaplotypeScore=10.698;MLEAC=1;MLEAF=0.5;MQ=60.055;MQRankSum=-0.2125;QD=16.105;ReadPosRankSum=-0.181;SOR=0.7805;ClippingRankSum=-0.728	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.373:142:80:2997:63:2375:-175.003,0.0,-230.949:63:44:142:78,63:2153,0,2743:1:.:1:.:.:.:-0.0664495	0/1:120.373:397:208:7832:190:7132:-533.715,0.0,-596.694:190:48:396:205,190:6817,0,7412:.:1:1:.:.:.:-0.107524
chr17	1252911	.	A	AT	2480.26	REJECT	NS=2;DP=221;DPB=299.35;AC=2;AN=2;AF=0.0;RO=84;AO=16;PRO=49.9167;PAO=42.9167;QR=3110;QA=457;PQR=1752.0;PQA=1501.0;SRF=18;SRR=66;SAF=1;SAR=15;SRP=62.5707;SAP=29.6108;AB=0.0723982;ABP=353.993;RUN=1;RPP=16.582;RPPR=13.3506;RPL=13.0;RPR=3.0;EPP=11.6962;EPPR=6.73282;DPRA=0.0;ODDS=145.271;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=7.0;LEN=1;MQM=56.875;MQMR=59.5238;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.536:58:22:813:4:109:-95.9139,-94.2339,-169.275:4:7:58:.:.:1:.:.:.:-0.0664495	./1:136.536:163:62:2297:12:348:-164.052,-149.109,-352.062:12:8:155:.:.:1:.:.:.:-0.107524
chr17	1252911	.	AT	A	1943.9950000000001	REJECT	NS=2;DP=221;DPB=299.35;AC=2;AN=4;AF=0.5;RO=84;AO=90;PRO=49.9167;PAO=47.4167;QR=3110;QA=3087;PQR=1752.0;PQA=1699.5;SRF=18;SRR=66;SAF=21;SAR=69;SRP=62.5707;SAP=58.6;AB=0.40724;ABP=19.5272;RUN=1;RPP=9.18693;RPPR=13.3506;RPL=53.0;RPR=37.0;EPP=3.10681;EPPR=6.73282;DPRA=0.0;ODDS=145.271;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=7.0;LEN=1;MQM=58.9444;MQMR=59.5238;PAIRED=0.988889;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.7205;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=59.675;MQRankSum=0.3195;QD=6.8;RPA=14,13;RU=T;ReadPosRankSum=-0.0975;SOR=0.435;STR;ClippingRankSum=-1.745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.768:60:22:813:31:1098:-95.9139,0.0,-66.505:33:55:60:26,36:742,0,441:1:.:1:.:.:.:-0.0664495	0/1:117.768:211:62:2297:59:1989:-164.052,0.0,-251.005:76:44:171:94,93:1445,0,1458:.:1:1:.:.:.:-0.107524
chr17	1252911	.	ATT	A	2480.26	PASS	SOMATIC;NS=2;DP=221;DPB=299.35;AC=2;AN=2;AF=0.0;RO=84;AO=23;PRO=49.9167;PAO=31.75;QR=3110;QA=764;PQR=1752.0;PQA=1134.5;SRF=18;SRR=66;SAF=5;SAR=18;SRP=62.5707;SAP=18.9659;AB=0.104072;ABP=303.921;RUN=1;RPP=3.86001;RPPR=13.3506;RPL=10.0;RPR=13.0;EPP=18.9659;EPPR=6.73282;DPRA=0.0;ODDS=145.271;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=7.0;LEN=2;MQM=59.6087;MQMR=59.5238;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:136.536:58:22:813:1:31:-95.9139,-103.608,-215.512:1:2:58:.:.:1:.:.:.:-0.0664495	./1:136.536:163:62:2297:22:733:-164.052,-131.467,-432.771:22:14:155:.:.:1:.:.:.:-0.107524
chr17	1253070	.	G	T	1218.89	REJECT	NS=2;DP=105;DPB=121.0;AC=2;AN=4;AF=0.5;RO=70;AO=51;PRO=0.0;PAO=0.0;QR=2584;QA=1913;PQR=0.0;PQA=0.0;SRF=32;SRR=38;SAF=11;SAR=40;SRP=4.12706;SAP=38.8183;AB=0.421488;ABP=9.48883;RUN=1;RPP=43.9277;RPPR=3.13438;RPL=41.0;RPR=10.0;EPP=29.6215;EPPR=47.8047;DPRA=0.0;ODDS=90.4597;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.2549;MQMR=59.5714;PAIRED=1.0;PAIREDR=0.985714;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5765;Dels=0.0;FS=9.9675;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-0.4565;QD=15.475;ReadPosRankSum=-1.4125;SOR=1.833;ClippingRankSum=1.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.448:33:17:599:15:566:-42.1203,0.0,-45.3605:16:48:33:17,17:608,0,548:1:.:1:.:.:.:-0.0664495	0/1:119.448:89:53:1985:36:1347:-95.6653,0.0,-154.546:36:40:89:53,36:1265,0,1970:.:1:1:.:.:.:-0.107524
chr17	1253130	.	A	G	1169.1100000000001	REJECT	NS=2;DP=98;DPB=114.0;AC=2;AN=4;AF=0.5;RO=65;AO=49;PRO=0.0;PAO=0.0;QR=2429;QA=1813;PQR=0.0;PQA=0.0;SRF=49;SRR=16;SAF=33;SAR=16;SRP=39.3908;SAP=15.8176;AB=0.429825;ABP=7.88659;RUN=1;RPP=10.4997;RPPR=5.71629;RPL=18.0;RPR=31.0;EPP=4.11819;EPPR=3.04371;DPRA=0.0;ODDS=83.1113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=46.3061;MQMR=58.5231;PAIRED=0.979592;PAIREDR=0.953846;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1775;Dels=0.0;FS=1.676;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=53.725;MQRankSum=-3.8995;QD=14.235;ReadPosRankSum=3.0765;SOR=0.551;ClippingRankSum=1.026	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.537:30:16:583:15:530:-36.3295,0.0,-44.108:15:50:30:14,15:478,0,481:1:.:1:.:.:.:-0.0664495	0/1:121.537:83:49:1846:34:1283:-88.884,0.0,-143.585:34:41:83:49,34:1187,0,1780:.:1:1:.:.:.:-0.107524
chr17	1253252	.	A	AT	572.47	REJECT	NS=2;DP=135;DPB=174.118;AC=2;AN=3;AF=0.25;RO=62;AO=19;PRO=16.1;PAO=13.4333;QR=2301;QA=667;PQR=586.45;PQA=485.117;SRF=25;SRR=37;SAF=11;SAR=8;SRP=8.05372;SAP=4.03889;AB=0.140741;ABP=154.354;RUN=1;RPP=4.03889;RPPR=14.358;RPL=11.0;RPR=8.0;EPP=3.12459;EPPR=11.9764;DPRA=0.0;ODDS=1.28206;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=59.8548;PAIRED=1.0;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:6.63139:29:10:367:5:160:-12.6992,0.0,-34.9886:5:20:25:.:.:1:.:.:.:-0.0664495	./1:79.5528:106:52:1934:14:507:-52.1397,-10.8099,-177.685:14:14:98:.:.:1:.:.:.:-0.107524
chr17	1253252	.	A	ATT	572.47	REJECT	NS=2;DP=135;DPB=174.118;AC=2;AN=3;AF=0.25;RO=62;AO=27;PRO=16.1;PAO=10.9333;QR=2301;QA=844;PQR=586.45;PQA=390.617;SRF=25;SRR=37;SAF=8;SAR=19;SRP=8.05372;SAP=12.7417;AB=0.2;ABP=108.544;RUN=1;RPP=9.52472;RPPR=14.358;RPL=18.0;RPR=9.0;EPP=3.09072;EPPR=11.9764;DPRA=0.0;ODDS=1.28206;GTI=0;TYPE=ins;CIGAR=1M2I16M;NUMALT=4;MEANALT=9.5;LEN=2;MQM=58.8148;MQMR=59.8548;PAIRED=0.962963;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.85;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-0.592;QD=4.93;RPA=12,14;RU=T;ReadPosRankSum=-0.934;SOR=0.9;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.63139:29:10:367:5:171:-12.6992,-1.89014,-37.1429:5:20:25:.:.:.:.:1:.:.:.:-0.0664495	0/1:89.2764:123:52:1934:22:673:-52.1397,0.0,-164.767:27:28:96:63,32:727,0,1892:.:1:1:.:.:.:-0.107524
chr17	1253252	.	A	ATTT	572.47	REJECT	NS=2;DP=135;DPB=174.118;AC=2;AN=2;AF=0.0;RO=62;AO=7;PRO=16.1;PAO=10.9333;QR=2301;QA=240;PQR=586.45;PQA=390.617;SRF=25;SRR=37;SAF=3;SAR=4;SRP=8.05372;SAP=3.32051;AB=0.0518519;ABP=238.511;RUN=1;RPP=5.80219;RPPR=14.358;RPL=5.0;RPR=2.0;EPP=3.32051;EPPR=11.9764;DPRA=0.0;ODDS=1.28206;GTI=0;TYPE=ins;CIGAR=1M3I16M;NUMALT=4;MEANALT=9.5;LEN=3;MQM=60.0;MQMR=59.8548;PAIRED=0.857143;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.63139:29:10:367:2:78:-12.6992,-9.46815,-45.5326:2:8:25:.:.:1:.:.:.:-0.0664495	./1:79.5528:106:52:1934:5:162:-52.1397,-41.1267,-210.449:5:5:98:.:.:1:.:.:.:-0.107524
chr17	1253252	.	AT	A	572.47	REJECT	NS=2;DP=135;DPB=174.118;AC=2;AN=2;AF=0.0;RO=62;AO=8;PRO=16.1;PAO=7.6;QR=2301;QA=305;PQR=586.45;PQA=275.2;SRF=25;SRR=37;SAF=4;SAR=4;SRP=8.05372;SAP=3.0103;AB=0.0592593;ABP=230.79;RUN=1;RPP=12.7819;RPPR=14.358;RPL=7.0;RPR=1.0;EPP=4.09604;EPPR=11.9764;DPRA=0.0;ODDS=1.28206;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=4;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=59.8548;PAIRED=0.875;PAIREDR=0.967742;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.63139:29:10:367:3:115:-12.6992,-10.7469,-93.4301:3:12:25:.:.:1:.:.:.:-0.0664495	./1:79.5528:106:52:1934:5:190:-52.1397,-58.0526,-297.624:5:5:98:.:.:1:.:.:.:-0.107524
chr17	1253540	.	C	A	12554.6	REJECT	NS=2;DP=334;DPB=372.0;AC=4;AN=4;AF=1.0;RO=0;AO=372;PRO=0.0;PAO=0.0;QR=0;QA=14301;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=273;SAR=99;SRP=0.0;SAP=179.74;AB=0.0;ABP=0.0;RUN=1;RPP=34.9753;RPPR=0.0;RPL=149.0;RPR=223.0;EPP=33.2708;EPPR=0.0;DPRA=0.0;ODDS=51.7513;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.086;MQMR=0.0;PAIRED=0.991935;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8795;MLEAC=2;MLEAF=1.0;MQ=59.125;QD=32.575;SOR=2.186	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:74:0:0:76:2934:-264.016,-20.6002,0.0:74:100:74:0,73:3122,220,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:296:0:0:296:11367:-1020.16,-80.1501,0.0:296:100:296:0,296:12663,876,0:.:1:1:.:.:.:-0.107524
chr17	1253963	.	T	C	729.859	REJECT	NS=2;DP=47;DPB=58.0;AC=2;AN=4;AF=0.5;RO=27;AO=31;PRO=0.0;PAO=0.0;QR=992;QA=1132;PQR=0.0;PQA=0.0;SRF=1;SRR=26;SAF=0;SAR=31;SRP=53.2759;SAP=70.3259;AB=0.534483;ABP=3.60933;RUN=1;RPP=3.64073;RPPR=6.95112;RPL=17.0;RPR=14.0;EPP=3.64073;EPPR=9.52472;DPRA=0.0;ODDS=36.6947;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6129;MQMR=55.7037;PAIRED=0.935484;PAIREDR=0.962963;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9995;Dels=0.0;FS=0.0;HaplotypeScore=2.913;MLEAC=1;MLEAF=0.5;MQ=59.0;MQRankSum=0.3185;QD=17.52;ReadPosRankSum=0.0375;SOR=1.457;ClippingRankSum=0.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0935:19:13:481:8:273:-19.0019,0.0,-36.2222:7:38:19:11,7:250,0,421:1:.:1:.:.:.:-0.0664495	0/1:121.1025:37:14:511:23:859:-67.4338,0.0,-35.9232:23:62:37:14,23:869,0,449:.:1:1:.:.:.:-0.107524
chr17	1254672	.	C	CA	281.935	REJECT	NS=2;DP=299;DPB=440.897;AC=2;AN=3;AF=0.25;RO=208;AO=24;PRO=85.0833;PAO=67.0833;QR=7515;QA=797;PQR=3006.42;PQA=2365.42;SRF=132;SRR=76;SAF=17;SAR=7;SRP=35.7494;SAP=12.0581;AB=0.0802676;ABP=460.552;RUN=1;RPP=4.45795;RPPR=57.1301;RPL=10.0;RPR=14.0;EPP=3.37221;EPPR=7.18621;DPRA=0.0;ODDS=1.34147;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.0354:75:49:1792:6:183:-14.5136,-7.64623,-172.893:6:9:69:.:.:1:.:.:.:-0.0664495	0/1:6.83469:224:159:5723:18:614:-21.6687,0.0,-525.531:18:9:205:.:.:1:.:.:.:-0.107524
chr17	1254672	.	CA	C	281.935	REJECT	NS=2;DP=299;DPB=440.897;AC=2;AN=3;AF=0.25;RO=208;AO=32;PRO=85.0833;PAO=55.0833;QR=7515;QA=1130;PQR=3006.42;PQA=1964.92;SRF=132;SRR=76;SAF=25;SAR=7;SRP=35.7494;SAP=24.9965;AB=0.107023;ABP=404.079;RUN=1;RPP=3.28173;RPPR=57.1301;RPL=15.0;RPR=17.0;EPP=7.35324;EPPR=7.18621;DPRA=0.0;ODDS=1.34147;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=3;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.053;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.765;QD=0.81;ReadPosRankSum=1.014;SOR=0.538;ClippingRankSum=0.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:76.5177:81:49:1792:10:337:-14.5136,0.0,-176.57:14:17:78:69,18:115,0,1419:1:.:1:.:.:.:-0.0664495	./1:6.83469:224:159:5723:22:793:-21.6687,-1.10583,-586.863:22:11:205:.:.:.:.:1:.:.:.:-0.107524
chr17	1254672	.	CAA	C	281.935	REJECT	NS=2;DP=299;DPB=440.897;AC=2;AN=2;AF=0.0;RO=208;AO=10;PRO=85.0833;PAO=49.75;QR=7515;QA=346;PQR=3006.42;PQA=1765.25;SRF=132;SRR=76;SAF=7;SAR=3;SRP=35.7494;SAP=6.48466;AB=0.0334448;ABP=568.327;RUN=1;RPP=6.48466;RPPR=57.1301;RPL=3.0;RPR=7.0;EPP=3.87889;EPPR=7.18621;DPRA=0.0;ODDS=1.34147;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=3;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:54.0354:75:49:1792:4:120:-14.5136,-19.446,-216.535:4:6:69:.:.:1:.:.:.:-0.0664495	./1:6.83469:224:159:5723:6:226:-21.6687,-61.2009,-698.509:6:3:205:.:.:1:.:.:.:-0.107524
chr17	1254875	.	A	G	8592.755000000001	REJECT	NS=2;DP=533;DPB=614.0;AC=2;AN=4;AF=0.5;RO=307;AO=307;PRO=0.0;PAO=0.0;QR=11722;QA=11784;PQR=0.0;PQA=0.0;SRF=107;SRR=200;SAF=108;SAR=199;SRP=64.1864;SAP=61.5835;AB=0.5;ABP=3.0103;RUN=1;RPP=3.01737;RPPR=6.75202;RPL=154.0;RPR=153.0;EPP=3.18713;EPPR=3.01737;DPRA=0.0;ODDS=533.288;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990228;PAIREDR=0.993485;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5015;Dels=0.0;FS=1.7215;HaplotypeScore=9.7354;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.247;QD=17.875;ReadPosRankSum=-0.344;SOR=0.618;ClippingRankSum=-0.202	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.027:157:80:3077:80:3068:-232.693,0.0,-233.505:79:50:157:77,78:2739,0,2757:1:.:1:.:.:.:-0.0664495	0/1:123.027:453:227:8645:227:8716:-660.953,0.0,-654.558:226:50:453:226,226:8400,0,8228:.:1:1:.:.:.:-0.107524
chr17	1255246	.	A	AT	628.5585	REJECT	NS=2;DP=120;DPB=154.7;AC=2;AN=4;AF=0.5;RO=49;AO=33;PRO=13.7833;PAO=13.1167;QR=1788;QA=1122;PQR=460.017;PQA=434.017;SRF=44;SRR=5;SAF=30;SAR=3;SRP=70.4146;SAP=50.9801;AB=0.255814;ABP=69.821;RUN=1;RPP=3.0761;RPPR=8.37251;RPL=17.0;RPR=16.0;EPP=4.65535;EPPR=15.8176;DPRA=0.0;ODDS=12.0828;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.689;FS=1.591;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.5395;QD=3.8;RPA=14,15;RU=T;ReadPosRankSum=0.073;SOR=0.891;STR;ClippingRankSum=-0.355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:75.7374:33:16:591:8:235:-14.6653,0.0,-46.7928:9:28:32:20,10:150,0,351:1:.:1:.:.:.:-0.0664495	0/1:117.5705:101:33:1197:25:887:-72.7594,0.0,-94.3982:32:37:84:55,39:524,0,820:.:1:1:.:.:.:-0.107524
chr17	1255246	.	A	ATT	770.387	REJECT	NS=2;DP=129;DPB=154.7;AC=2;AN=2;AF=0.0;RO=49;AO=4;PRO=13.7833;PAO=13.1167;QR=1788;QA=140;PQR=460.017;PQA=434.017;SRF=44;SRR=5;SAF=4;SAR=0;SRP=70.4146;SAP=11.6962;AB=0.0310078;ABP=249.464;RUN=1;RPP=5.18177;RPPR=8.37251;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=15.8176;DPRA=0.0;ODDS=12.0828;GTI=0;TYPE=ins;CIGAR=1M2I19M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.4748:37:16:591:2:70:-14.6653,-13.2413,-61.6213:2:6:35:.:.:1:.:.:.:-0.0664495	./1:136.141:92:33:1197:2:70:-72.7594,-67.3013,-167.908:2:3:74:.:.:1:.:.:.:-0.107524
chr17	1255246	.	AT	A	770.387	REJECT	NS=2;DP=129;DPB=154.7;AC=2;AN=2;AF=0.0;RO=49;AO=18;PRO=13.7833;PAO=11.5333;QR=1788;QA=654;PQR=460.017;PQA=373.767;SRF=44;SRR=5;SAF=17;SAR=1;SRP=70.4146;SAP=33.8935;AB=0.139535;ABP=148.6;RUN=1;RPP=4.9405;RPPR=8.37251;RPL=7.0;RPR=11.0;EPP=7.35324;EPPR=15.8176;DPRA=0.0;ODDS=12.0828;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=59.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.4748:37:16:591:5:196:-14.6653,-4.87979,-77.3105:5:14:35:.:.:1:.:.:.:-0.0664495	./1:136.141:92:33:1197:13:458:-72.7594,-47.5267,-185.202:13:18:74:.:.:1:.:.:.:-0.107524
chr17	1255246	.	ATT	A	770.387	REJECT	NS=2;DP=129;DPB=154.7;AC=2;AN=2;AF=0.0;RO=49;AO=3;PRO=13.7833;PAO=11.3333;QR=1788;QA=119;PQR=460.017;PQA=366.967;SRF=44;SRR=5;SAF=2;SAR=1;SRP=70.4146;SAP=3.73412;AB=0.0232558;ABP=257.679;RUN=1;RPP=3.73412;RPPR=8.37251;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=15.8176;DPRA=0.0;ODDS=12.0828;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.4748:37:16:591:2:79:-14.6653,-14.6044,-87.8494:2:6:35:.:.:1:.:.:.:-0.0664495	./1:136.141:92:33:1197:1:40:-72.7594,-83.255,-238.12:1:1:74:.:.:1:.:.:.:-0.107524
chr17	1255261	.	A	TT	770.387	REJECT	NS=2;DP=129;DPB=154.7;AC=2;AN=2;AF=0.0;RO=49;AO=2;PRO=13.7833;PAO=8.11667;QR=1788;QA=62;PQR=460.017;PQA=268.217;SRF=44;SRR=5;SAF=1;SAR=1;SRP=70.4146;SAP=3.0103;AB=0.0540541;ABP=66.922;RUN=1;RPP=3.0103;RPPR=8.37251;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=15.8176;DPRA=0.0;ODDS=12.0828;GTI=0;TYPE=complex;CIGAR=1M1I14M1X4M;NUMALT=5;MEANALT=7.0;LEN=21;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.4748:37:16:591:2:62:-14.6653,-24.8089,-180.884:2:6:35:.:.:1:.:.:.:-0.0664495	./1:136.141:92:33:1197:0:0:-72.7594,-96.0793,-429.007:0:0:74:.:.:1:.:.:.:-0.107524
chr17	1255502	.	G	C	9392.11	REJECT	NS=2;DP=573;DPB=658.0;AC=2;AN=4;AF=0.5;RO=327;AO=331;PRO=0.0;PAO=0.0;QR=12547;QA=12771;PQR=0.0;PQA=0.0;SRF=181;SRR=146;SAF=157;SAR=174;SRP=11.145;SAP=4.90624;AB=0.50304;ABP=3.0631;RUN=1;RPP=8.52755;RPPR=3.81381;RPL=151.0;RPR=180.0;EPP=6.48072;EPPR=3.07007;DPRA=0.0;ODDS=548.538;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996979;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.654;Dels=0.0;FS=4.5855;HaplotypeScore=6.8902;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.241;QD=17.975;ReadPosRankSum=0.6795;SOR=0.6685;ClippingRankSum=-0.947	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0465:165:82:3153:84:3202:-243.113,0.0,-238.731:83:51:165:81,83:2848,0,2817:1:.:1:.:.:.:-0.0664495	0/1:119.0465:490:245:9394:247:9569:-727.293,0.0,-711.608:246:50:490:242,246:9183,0,8951:.:1:1:.:.:.:-0.107524
chr17	1255823	.	C	CT	818.918	REJECT	NS=2;DP=266;DPB=365.381;AC=2;AN=2;AF=0.0;RO=119;AO=24;PRO=74.3333;PAO=54.3333;QR=4273;QA=585;PQR=2657.75;PQA=1951.75;SRF=38;SRR=81;SAF=4;SAR=20;SRP=36.7502;SAP=26.1727;AB=0.0902256;ABP=390.969;RUN=1;RPP=8.80089;RPPR=8.28388;RPL=16.0;RPR=8.0;EPP=8.80089;EPPR=7.11603;DPRA=0.0;ODDS=40.9424;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:61:28:990:3:82:-19.8457,-22.4913,-120.981:3:6:47:.:.:1:.:.:.:-0.0664495	./1:160.002:205:91:3283:21:503:-72.1932,-58.0898,-366.633:21:12:171:.:.:1:.:.:.:-0.107524
chr17	1255823	.	CT	C	818.918	REJECT	NS=2;DP=266;DPB=365.381;AC=2;AN=4;AF=0.5;RO=119;AO=56;PRO=74.3333;PAO=49.8333;QR=4273;QA=1583;PQR=2657.75;PQA=1791.25;SRF=38;SRR=81;SAF=13;SAR=43;SRP=36.7502;SAP=37.909;AB=0.210526;ABP=196.614;RUN=1;RPP=15.5738;RPPR=8.28388;RPL=37.0;RPR=19.0;EPP=3.63072;EPPR=7.11603;DPRA=0.0;ODDS=40.9424;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=17.0;LEN=1;MQM=60.3214;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.735;FS=4.544;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.523;QD=2.94;ReadPosRankSum=0.777;SOR=1.445;ClippingRankSum=-1.395	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:63:28:990:11:302:-19.8457,0.0,-123.656:18:31:56:40,26:334,0,752:1:.:1:.:.:.:-0.0664495	0/1:160.002:205:91:3283:45:1281:-72.1932,0.0,-357.135:45:26:171:.:.:.:.:1:.:.:.:-0.107524
chr17	1255823	.	CTT	C	818.918	REJECT	NS=2;DP=266;DPB=365.381;AC=2;AN=2;AF=0.0;RO=119;AO=19;PRO=74.3333;PAO=40.5;QR=4273;QA=467;PQR=2657.75;PQA=1452.25;SRF=38;SRR=81;SAF=5;SAR=14;SRP=36.7502;SAP=12.2676;AB=0.0714286;ABP=427.378;RUN=1;RPP=5.8675;RPPR=8.28388;RPL=12.0;RPR=7.0;EPP=5.8675;EPPR=7.11603;DPRA=0.0;ODDS=40.9424;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=3;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.377;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.183;QD=0.29;RPA=14,12;RU=T;ReadPosRankSum=-1.726;SOR=0.631;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:61:28:990:5:115:-19.8457,-30.9028,-246.339:5:11:47:.:.:.:.:1:.:.:.:-0.0664495	./1:129.501:267:91:3283:14:352:-72.1932,-84.5724,-525.256:19:10:184:174,24:134,0,4684:.:1:1:.:.:.:-0.107524
chr17	1256745	.	G	A	67.9303	REJECT	NS=2;DP=7;DPB=19.94;AC=2;AN=4;AF=0.5;RO=3;AO=2;PRO=18.5;PAO=14.5;QR=106;QA=79;PQR=648.5;PQA=463.5;SRF=2;SRR=1;SAF=1;SAR=1;SRP=3.73412;SAP=3.0103;AB=0.5;ABP=3.0103;RUN=1;RPP=3.0103;RPPR=3.73412;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=9.52472;DPRA=0.0;ODDS=7.77175;GTI=0;TYPE=snp;CIGAR=14M1X35M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33.7525:3:2:73:0:0:-3.8012,0.0,-18.213:0:0:2:.:.:1:.:.:.:-0.0664495	0/1:48.6177:4:1:33:2:79:-6.49679,0.0,-11.3038:2:67:3:.:.:1:.:.:.:-0.107524
chr17	1257057	.	C	CA	2177.43	REJECT	NS=2;DP=280;DPB=357.864;AC=2;AN=2;AF=0.0;RO=71;AO=19;PRO=44.2167;PAO=45.2167;QR=2515;QA=636;PQR=1548.97;PQA=1544.97;SRF=44;SRR=27;SAF=15;SAR=4;SRP=11.8491;SAP=16.8392;AB=0.0678571;ABP=457.189;RUN=1;RPP=16.8392;RPPR=28.7315;RPL=4.0;RPR=15.0;EPP=4.03889;EPPR=8.17902;DPRA=0.0;ODDS=63.3611;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=4;MEANALT=19.0;LEN=1;MQM=59.8421;MQMR=60.0;PAIRED=1.0;PAIREDR=0.971831;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.139:55:12:427:2:75:-48.5757,-41.5671,-78.5664:2:4:46:.:.:1:.:.:.:-0.0664495	./1:131.139:225:59:2088:17:561:-181.831,-149.25,-321.729:17:9:185:.:.:1:.:.:.:-0.107524
chr17	1257057	.	CA	C	2177.43	REJECT	NS=2;DP=280;DPB=357.864;AC=2;AN=2;AF=0.0;RO=71;AO=29;PRO=44.2167;PAO=31.2167;QR=2515;QA=950;PQR=1548.97;PQA=1046.97;SRF=44;SRR=27;SAF=22;SAR=7;SRP=11.8491;SAP=19.8579;AB=0.103571;ABP=385.22;RUN=1;RPP=12.0706;RPPR=28.7315;RPL=9.0;RPR=20.0;EPP=3.68421;EPPR=8.17902;DPRA=0.0;ODDS=63.3611;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=4;MEANALT=19.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.971831;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.139:55:12:427:6:206:-48.5757,-39.5153,-126.356:6:13:46:.:.:1:.:.:.:-0.0664495	./1:131.139:225:59:2088:23:744:-181.831,-145.323,-399.576:23:12:185:.:.:1:.:.:.:-0.107524
chr17	1257057	.	CAA	C	2177.43	REJECT	NS=2;DP=275;DPB=357.864;AC=2;AN=4;AF=0.5;RO=71;AO=96;PRO=44.2167;PAO=33.55;QR=2515;QA=3103;PQR=1548.97;PQA=1155.3;SRF=44;SRR=27;SAF=67;SAR=29;SRP=11.8491;SAP=35.6729;AB=0.342857;ABP=63.067;RUN=1;RPP=39.2015;RPPR=28.7315;RPL=28.0;RPR=68.0;EPP=3.8246;EPPR=8.17902;DPRA=0.0;ODDS=63.3611;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=4;MEANALT=19.0;LEN=2;MQM=60.1042;MQMR=60.0;PAIRED=0.989583;PAIREDR=0.971831;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.093;FS=1.821;MLEAC=1;MLEAF=0.5;MQ=59.935;MQRankSum=-0.363;QD=9.865;RPA=14,12;RU=A;ReadPosRankSum=0.1415;SOR=1.0455;STR;ClippingRankSum=-0.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.0695:53:12:427:23:705:-48.5757,0.0,-91.5918:25:51:48:24,27:776,0,590:1:.:1:.:.:.:-0.0664495	0/1:115.0695:247:59:2088:73:2398:-181.831,0.0,-242.369:83:41:200:123,93:2440,0,2917:.:1:1:.:.:.:-0.107524
chr17	1257057	.	CAAA	C	2177.43	REJECT	NS=2;DP=280;DPB=357.864;AC=2;AN=2;AF=0.0;RO=71;AO=16;PRO=44.2167;PAO=29.8;QR=2515;QA=530;PQR=1548.97;PQA=1000.8;SRF=44;SRR=27;SAF=11;SAR=5;SRP=11.8491;SAP=7.89611;AB=0.0571429;ABP=479.99;RUN=1;RPP=3.0103;RPPR=28.7315;RPL=8.0;RPR=8.0;EPP=3.55317;EPPR=8.17902;DPRA=0.0;ODDS=63.3611;GTI=0;TYPE=del;CIGAR=1M3D18M;NUMALT=4;MEANALT=19.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.971831;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.139:55:12:427:3:96:-48.5757,-50.503,-160.029:3:7:46:.:.:1:.:.:.:-0.0664495	./1:131.139:225:59:2088:13:434:-181.831,-174.588,-504.143:13:7:185:.:.:1:.:.:.:-0.107524
chr17	1265304	.	TA	T	684.881	REJECT	NS=1;DP=56;DPB=71.7037;AC=1;AN=3;AF=0.0;RO=16;AO=7;PRO=9.25;PAO=5.75;QR=598;QA=246;PQR=323.0;PQA=200.0;SRF=5;SRR=11;SAF=1;SAR=6;SRP=7.89611;SAP=10.7656;AB=0.125;ABP=71.4117;RUN=1;RPP=5.80219;RPPR=16.582;RPL=5.0;RPR=2.0;EPP=3.32051;EPPR=5.18177;DPRA=0.0;ODDS=47.6871;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.892;FS=3.148;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-0.561;QD=1.87;ReadPosRankSum=-1.417;SOR=1.248;ClippingRankSum=-0.789	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:129.501:59:16:598:7:246:-75.6794,-49.8807,-152.249:11:19:54:47,15:181,0,982:1:.:1:.:.:.:-0.0664495	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.107524
chr17	1265317	.	ATTTTTTTT	TTTTTTTA	684.881	REJECT	NS=1;DP=56;DPB=71.7037;AC=1;AN=3;AF=0.0;RO=16;AO=4;PRO=9.25;PAO=4.75;QR=598;QA=147;PQR=323.0;PQA=160.0;SRF=5;SRR=11;SAF=1;SAR=3;SRP=7.89611;SAP=5.18177;AB=0.0714286;ABP=92.3509;RUN=1;RPP=3.0103;RPPR=16.582;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=5.18177;DPRA=0.0;ODDS=47.6871;GTI=0;TYPE=complex;CIGAR=1M1D19M1X5M;NUMALT=3;MEANALT=10.0;LEN=26;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:56:16:598:4:147:-75.6794,-61.3106,-164.754:4:9:47:.:.:1:.:.:.:-0.0664495	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.107524
chr17	1265325	.	T	A	684.881	REJECT	NS=1;DP=56;DPB=71.7037;AC=1;AN=4;AF=0.5;RO=16;AO=20;PRO=9.25;PAO=13.25;QR=598;QA=791;PQR=323.0;PQA=461.0;SRF=5;SRR=11;SAF=3;SAR=17;SRP=7.89611;SAP=24.2907;AB=0.357143;ABP=12.937;RUN=1;RPP=9.95901;RPPR=16.582;RPL=14.0;RPR=6.0;EPP=3.44459;EPPR=5.18177;DPRA=0.0;ODDS=47.6871;GTI=0;TYPE=snp;CIGAR=21M1X5M;NUMALT=3;MEANALT=10.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:56:16:598:20:791:-75.6794,0.0,-45.8858:20:43:47:.:.:1:.:.:.:-0.0664495	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.107524
chr17	4531882	.	T	C	6228.13	REJECT	NS=2;DP=386;DPB=449.0;AC=2;AN=4;AF=0.5;RO=221;AO=227;PRO=0.0;PAO=0.0;QR=8448;QA=8647;PQR=0.0;PQA=0.0;SRF=96;SRR=125;SAF=94;SAR=133;SRP=11.2737;SAP=17.5601;AB=0.505568;ABP=3.13121;RUN=1;RPP=3.01987;RPPR=3.49176;RPL=113.0;RPR=114.0;EPP=19.0907;EPPR=16.4616;DPRA=0.0;ODDS=390.349;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991189;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.207;Dels=0.0;FS=5.325;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8575;QD=17.815;ReadPosRankSum=-0.456;SOR=0.8315;ClippingRankSum=0.053	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:121:59:2259:63:2351:-178.534,0.0,-170.267:63:52:121:57,63:2088,0,1807:1:.:1:.:.:.:-0.0664495	0/1:129.501:325:162:6189:164:6296:-478.012,0.0,-468.377:163:50:325:162,162:6011,0,5936:.:1:1:.:.:.:-0.107524
chr17	5031541	.	A	G	18061.8	REJECT	NS=2;DP=476;DPB=543.0;AC=4;AN=4;AF=1.0;RO=0;AO=542;PRO=0.0;PAO=0.0;QR=0;QA=20657;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=260;SAR=282;SRP=0.0;SAP=4.9494;AB=0.0;ABP=0.0;RUN=1;RPP=6.15132;RPPR=0.0;RPL=285.0;RPR=257.0;EPP=10.7667;EPPR=0.0;DPRA=0.0;ODDS=87.7152;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9354;MQMR=0.0;PAIRED=0.99631;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.0;MQ=59.925;QD=26.575;SOR=0.7965	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.2865:131:0:0:134:4898:-440.697,-36.2192,0.0:131:100:131:0,129:5173,386,0:1:.:1:.:.:.:-0.0664495	1/1:123.2865:409:0:0:408:15759:-1417.27,-110.486,0.0:408:100:408:0,408:17629,1213,0:.:1:1:.:.:.:-0.107524
chr17	5032026	.	A	G	4077.3	REJECT	NS=2;DP=119;DPB=137.0;AC=4;AN=4;AF=1.0;RO=0;AO=137;PRO=0.0;PAO=0.0;QR=0;QA=5111;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=121;SAR=16;SRP=0.0;SAP=177.758;AB=0.0;ABP=0.0;RUN=1;RPP=4.92817;RPPR=0.0;RPL=63.0;RPR=74.0;EPP=3.15295;EPPR=0.0;DPRA=0.0;ODDS=28.0858;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=46.3139;MQMR=0.0;PAIRED=0.992701;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=2;Dels=0.0;FS=0.0;HaplotypeScore=2.9242;MLEAC=2;MLEAF=1.0;MQ=46.295;QD=31.065;SOR=4.004	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:110.4605:37:0:0:38:1484:-128.378,-10.3225,0.0:37:100:37:0,37:1621,111,0:1:.:1:.:.:.:-0.0664495	1/1:124.8975:100:0:0:99:3627:-312.114,-26.3038,0.0:100:100:100:0,101:4011,283,0:.:1:1:.:.:.:-0.107524
chr17	5032168	.	G	A	9833.585	REJECT	NS=2;DP=263;DPB=305.0;AC=4;AN=4;AF=1.0;RO=0;AO=304;PRO=0.0;PAO=0.0;QR=0;QA=11477;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=190;SAR=114;SRP=0.0;SAP=44.2683;AB=0.0;ABP=0.0;RUN=1;RPP=3.26745;RPPR=0.0;RPL=155.0;RPR=149.0;EPP=3.26745;EPPR=0.0;DPRA=0.0;ODDS=55.4035;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.0;SOR=1.4755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:79:0:0:82:3054:-274.933,-22.1864,0.0:79:100:79:0,76:3165,227,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:222:0:0:222:8423:-757.731,-60.1166,0.0:222:100:222:0,222:9451,659,0:.:1:1:.:.:.:-0.107524
chr17	5032410	.	G	A	15180.15	REJECT	NS=2;DP=407;DPB=461.0;AC=4;AN=4;AF=1.0;RO=0;AO=461;PRO=0.0;PAO=0.0;QR=0;QA=17351;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=254;SAR=207;SRP=0.0;SAP=13.4155;AB=0.0;ABP=0.0;RUN=1;RPP=9.45877;RPPR=0.0;RPL=212.0;RPR=249.0;EPP=12.5488;EPPR=0.0;DPRA=0.0;ODDS=71.0687;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9436;MQMR=0.0;PAIRED=0.991323;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8989;MLEAC=2;MLEAF=1.0;MQ=59.93;QD=27.535;SOR=0.8985	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:107:4044:-363.951,-28.9897,0.0:106:100:106:0,106:4292,318,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:354:0:0:354:13307:-1196.83,-95.8174,0.0:354:100:354:0,354:14850,1041,0:.:1:1:.:.:.:-0.107524
chr17	5036191	.	G	A	1081.05	REJECT	NS=2;DP=233;DPB=265.0;AC=2;AN=4;AF=0.5;RO=186;AO=79;PRO=0.0;PAO=0.0;QR=6941;QA=2986;PQR=0.0;PQA=0.0;SRF=122;SRR=64;SAF=59;SAR=20;SRP=42.2836;SAP=44.818;AB=0.298113;ABP=96.8261;RUN=1;RPP=80.2213;RPPR=53.8648;RPL=13.0;RPR=66.0;EPP=7.6556;EPPR=32.1968;DPRA=0.0;ODDS=89.0255;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=32.557;MQMR=60.0;PAIRED=0.860759;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=7;BaseQRankSum=0.089;Dels=0.0;FS=4.7765;HaplotypeScore=3.8989;MLEAC=1;MLEAF=0.5;MQ=54.705;MQRankSum=-8.383;QD=6.37;ReadPosRankSum=-0.3015;SOR=1.3155;ClippingRankSum=-1.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:65:44:1666:27:991:-45.569,0.0,-131.555:22:34:65:42,18:470,0,1528:1:.:1:.:.:.:-0.0664495	0/1:129.501:197:142:5275:52:1995:-81.0641,0.0,-423.357:55:28:197:142,59:1110,0,5283:.:1:1:.:.:.:-0.107524
chr17	5036205	.	A	C	1248.55	REJECT	NS=2;DP=263;DPB=303.0;AC=2;AN=4;AF=0.5;RO=214;AO=88;PRO=0.0;PAO=0.0;QR=8191;QA=3404;PQR=0.0;PQA=0.0;SRF=134;SRR=80;SAF=60;SAR=28;SRP=32.5991;SAP=28.2783;AB=0.290429;ABP=118.6;RUN=1;RPP=74.965;RPPR=49.9303;RPL=17.0;RPR=71.0;EPP=3.109;EPPR=13.4009;DPRA=0.0;ODDS=114.574;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=33.25;MQMR=60.0;PAIRED=0.840909;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=6;BaseQRankSum=-0.082;Dels=0.0;FS=2.3815;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=54.955;MQRankSum=-9.033;QD=7.495;ReadPosRankSum=1.582;SOR=0.9895;ClippingRankSum=0.109	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.0805:81:56:2195:30:1166:-52.6838,0.0,-175.079:26:32:81:54,22:758,0,2216:1:.:1:.:.:.:-0.0664495	0/1:121.0805:220:158:5996:58:2238:-92.5615,0.0,-482.286:61:28:219:158,64:1230,0,6074:.:1:1:.:.:.:-0.107524
chr17	5036210	.	TC	GT	962.77	PASS	DP=148;AC=2;AN=4;AF=0.5;MQ0=6;JOINED;BaseQRankSum=-0.9505;Dels=0.0;FS=3.505;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=54.94;MQRankSum=-8.9875;QD=7.74;ReadPosRankSum=2.198;SOR=1.0955;ClippingRankSum=-0.704	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,22:75:99.0:797,0,2262:22:29:75:1:.:.:.:.:.:-0.0664495	0/1:158,63:221:99.0:1185,0,6045:63:29:221:.:1:.:.:.:.:-0.107524
chr17	5036210	.	TCGGC	GTGGT	1423.48	REJECT	NS=2;DP=295;DPB=309.2;AC=2;AN=4;AF=0.5;RO=207;AO=87;PRO=21.0;PAO=4.0;QR=7846;QA=3163;PQR=694.0;PQA=148.0;SRF=124;SRR=83;SAF=59;SAR=28;SRP=20.6443;SAP=26.9963;AB=0.294915;ABP=110.782;RUN=1;RPP=18.61;RPPR=32.4773;RPL=31.0;RPR=56.0;EPP=4.23331;EPPR=3.27256;DPRA=0.0;ODDS=128.76;GTI=0;TYPE=complex;CIGAR=2X2M1X;NUMALT=1;MEANALT=1.5;LEN=5;MQM=33.1724;MQMR=60.0;PAIRED=0.83908;PAIREDR=0.990338;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:143.553:85:54:2063:30:1084:-57.3108,0.0,-169.157:30:36:84:.:.:1:.:.:.:-0.0664495	0/1:143.553:210:153:5783:57:2079:-94.6533,0.0,-515.067:57:27:210:.:.:1:.:.:.:-0.107524
chr17	5036214	.	C	T	1000.77	PASS	DP=156;AC=2;AN=4;AF=0.5;MQ0=6;BaseQRankSum=-3.0875;Dels=0.0;FS=2.376;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=55.035;MQRankSum=-9.174;QD=7.745;ReadPosRankSum=1.995;SOR=1.0095;ClippingRankSum=-0.877	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56,24:80:99.0:866,0,2283:24:30:80:1:.:.:.:.:.:-0.0664495	0/1:166,66:232:99.0:1192,0,6450:66:28:232:.:1:.:.:.:.:-0.107524
chr17	5036224	.	C	G	1998.18	REJECT	NS=2;DP=324;DPB=371.0;AC=2;AN=4;AF=0.5;RO=249;AO=121;PRO=0.0;PAO=0.0;QR=9207;QA=4494;PQR=0.0;PQA=0.0;SRF=139;SRR=110;SAF=74;SAR=47;SRP=10.3445;SAP=16.093;AB=0.326146;ABP=100.41;RUN=1;RPP=24.9942;RPPR=39.8556;RPL=43.0;RPR=78.0;EPP=5.18177;EPPR=3.22832;DPRA=0.0;ODDS=163.548;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=38.4132;MQMR=60.0;PAIRED=0.809917;PAIREDR=0.991968;technology.ILLUMINA=1.0;MQ0=6;BaseQRankSum=1.2825;Dels=0.0;FS=3.011;HaplotypeScore=7.6554;MLEAC=1;MLEAF=0.5;MQ=55.355;MQRankSum=-7.514;QD=8.85;ReadPosRankSum=0.5545;SOR=1.032;ClippingRankSum=0.896	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.537:93:60:2221:40:1456:-72.3999,0.0,-173.663:34:36:93:58,29:974,0,2341:1:.:1:.:.:.:-0.0664495	0/1:121.537:274:189:6986:81:3038:-147.516,0.0,-556.739:84:31:273:189,87:1920,0,6884:.:1:1:.:.:.:-0.107524
chr17	5036274	.	C	A	3051.325	REJECT	NS=2;DP=357;DPB=403.0;AC=2;AN=4;AF=0.5;RO=262;AO=140;PRO=0.0;PAO=0.0;QR=9960;QA=5295;PQR=0.0;PQA=0.0;SRF=132;SRR=130;SAF=73;SAR=67;SRP=3.04345;SAP=3.56868;AB=0.347395;ABP=84.5294;RUN=1;RPP=6.98099;RPPR=32.8473;RPL=78.0;RPR=62.0;EPP=4.56135;EPPR=11.4973;DPRA=0.0;ODDS=173.186;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=44.8071;MQMR=60.0;PAIRED=0.771429;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=5;BaseQRankSum=0.4545;Dels=0.0;FS=0.458;HaplotypeScore=5.8657;MLEAC=1;MLEAF=0.5;MQ=56.015;MQRankSum=-5.9475;QD=10.545;ReadPosRankSum=0.8575;SOR=0.724;ClippingRankSum=0.85	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:61:2314:36:1329:-75.99,0.0,-182.427:33:35:94:60,31:1055,0,2400:1:.:1:.:.:.:-0.0664495	0/1:129.501:308:201:7646:104:3966:-235.619,0.0,-605.794:106:34:307:201,109:3079,0,7613:.:1:1:.:.:.:-0.107524
chr17	5036281	.	G	C	2922.45	REJECT	NS=2;DP=344;DPB=391.0;AC=2;AN=4;AF=0.5;RO=254;AO=137;PRO=0.0;PAO=0.0;QR=9749;QA=5078;PQR=0.0;PQA=0.0;SRF=123;SRR=131;SAF=65;SAR=72;SRP=3.55744;SAP=3.78696;AB=0.350384;ABP=79.034;RUN=1;RPP=7.591;RPPR=42.5414;RPL=77.0;RPR=60.0;EPP=5.68898;EPPR=12.8931;DPRA=0.0;ODDS=189.36;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=46.1241;MQMR=60.0;PAIRED=0.759124;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=3;BaseQRankSum=-0.6695;Dels=0.0;FS=0.2335;HaplotypeScore=8.8318;MLEAC=1;MLEAF=0.5;MQ=56.285;MQRankSum=-5.681;QD=10.735;ReadPosRankSum=1.4225;SOR=0.719;ClippingRankSum=0.35	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:59:2222:38:1416:-83.128,0.0,-174.135:35:37:94:59,33:1117,0,2409:1:.:1:.:.:.:-0.0664495	0/1:129.501:295:195:7527:99:3662:-221.787,0.0,-597.658:100:34:295:195,102:2890,0,7567:.:1:1:.:.:.:-0.107524
chr17	5036329	.	A	G	1823.8	REJECT	NS=2;DP=167;DPB=190.0;AC=2;AN=4;AF=0.5;RO=112;AO=78;PRO=0.0;PAO=0.0;QR=4354;QA=2955;PQR=0.0;PQA=0.0;SRF=43;SRR=69;SAF=31;SAR=47;SRP=16.1167;SAP=10.1372;AB=0.410526;ABP=16.222;RUN=1;RPP=61.9184;RPPR=114.996;RPL=62.0;RPR=16.0;EPP=3.45573;EPPR=3.70827;DPRA=0.0;ODDS=106.287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.5897;MQMR=60.0;PAIRED=0.717949;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3185;Dels=0.0;FS=0.5945;HaplotypeScore=2.9304;MLEAC=1;MLEAF=0.5;MQ=55.95;MQRankSum=-3.3585;QD=12.145;ReadPosRankSum=-0.897;SOR=0.5715;ClippingRankSum=1.482	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:45:26:990:19:715:-48.1654,0.0,-77.0336:19:42:45:26,19:538,0,902:1:.:1:.:.:.:-0.0664495	0/1:129.501:145:86:3364:59:2240:-146.604,0.0,-263.422:59:41:145:86,59:1907,0,3344:.:1:1:.:.:.:-0.107524
chr17	5036740	.	C	G	866.709	REJECT	NS=2;DP=311;DPB=355.0;AC=2;AN=4;AF=0.5;RO=278;AO=77;PRO=0.0;PAO=0.0;QR=10438;QA=2954;PQR=0.0;PQA=0.0;SRF=191;SRR=87;SAF=54;SAR=23;SRP=87.4946;SAP=30.1114;AB=0.216901;ABP=250.136;RUN=1;RPP=65.3062;RPPR=43.5028;RPL=15.0;RPR=62.0;EPP=3.71532;EPPR=29.2867;DPRA=0.0;ODDS=65.0842;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=35.8831;MQMR=59.946;PAIRED=0.818182;PAIREDR=0.996403;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4095;Dels=0.0;FS=8.0625;HaplotypeScore=3.9549;MLEAC=1;MLEAF=0.5;MQ=56.66;MQRankSum=-7.8885;QD=4.595;ReadPosRankSum=0.628;SOR=1.436;ClippingRankSum=1.659	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5975:84:65:2452:22:862:-32.3471,0.0,-197.664:19:23:84:65,17:489,0,2760:1:.:1:.:.:.:-0.0664495	0/1:118.5975:268:213:7986:55:2092:-69.1622,0.0,-646.08:55:21:268:213,55:984,0,8107:.:1:1:.:.:.:-0.107524
chr17	5036748	.	G	T	1011.12	REJECT	NS=2;DP=328;DPB=375.0;AC=2;AN=4;AF=0.5;RO=289;AO=85;PRO=0.0;PAO=0.0;QR=11071;QA=3246;PQR=0.0;PQA=0.0;SRF=193;SRR=96;SAF=56;SAR=29;SRP=73.7071;SAP=21.6339;AB=0.226667;ABP=246.36;RUN=1;RPP=59.443;RPPR=54.7725;RPL=19.0;RPR=66.0;EPP=4.26209;EPPR=30.9689;DPRA=0.0;ODDS=66.7623;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=35.3294;MQMR=59.9377;PAIRED=0.823529;PAIREDR=0.99654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0095;Dels=0.0;FS=7.851;HaplotypeScore=2.9242;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-7.787;QD=4.585;ReadPosRankSum=1.167;SOR=1.3875;ClippingRankSum=-0.954	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3845:90:70:2678:24:908:-32.0567,0.0,-216.109:20:23:90:69,17:480,0,2833:1:.:1:.:.:.:-0.0664495	0/1:119.3845:281:219:8393:61:2338:-82.439,0.0,-679.46:61:22:280:219,61:1147,0,8577:.:1:1:.:.:.:-0.107524
chr17	5036761	.	A	C	950.836	REJECT	NS=2;DP=418;DPB=418.0;AC=2;AN=4;AF=0.5;RO=327;AO=90;PRO=0.0;PAO=0.0;QR=12525;QA=3418;PQR=0.0;PQA=0.0;SRF=199;SRR=128;SAF=58;SAR=32;SRP=36.4855;SAP=19.3205;AB=0.215311;ABP=297.271;RUN=1;RPP=34.2795;RPPR=50.9886;RPL=27.0;RPR=63.0;EPP=21.9262;EPPR=26.1262;DPRA=0.0;ODDS=64.4012;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=34.2;MQMR=58.7492;PAIRED=0.833333;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.377;Dels=0.0;FS=1.21;HaplotypeScore=5.899;MLEAC=1;MLEAF=0.5;MQ=55.39;MQRankSum=-10.129;QD=3.34;ReadPosRankSum=1.972;SOR=0.502	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:104:78:2999:26:993:-30.0751,0.0,-243.038:26:25:104:.:.:.:.:1:.:.:.:-0.0664495	0/1:129.501:314:249:9526:64:2425:-77.2545,0.0,-770.115:64:20:313:249,64:1077,0,9698:.:1:1:.:.:.:-0.107524
chr17	5036784	.	C	T	1107.17	REJECT	NS=2;DP=467;DPB=474.0;AC=2;AN=3;AF=0.25;RO=372;AO=34;PRO=9.5;PAO=4.0;QR=14078;QA=947;PQR=259.0;PQA=48.0;SRF=202;SRR=170;SAF=19;SAR=15;SRP=8.98769;SAP=4.03217;AB=0.0728051;ABP=743.268;RUN=1;RPP=5.30951;RPPR=28.4375;RPL=20.0;RPR=14.0;EPP=19.3602;EPPR=4.15441;DPRA=0.0;ODDS=33.0394;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=33.0882;MQMR=57.9409;PAIRED=0.735294;PAIREDR=0.989247;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.992;FS=23.303;MLEAC=1;MLEAF=0.5;MQ=56.2;MQRankSum=-4.751;QD=0.32;ReadPosRankSum=-1.395;SOR=3.607;ClippingRankSum=0.532	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:98.194:116:94:3500:19:538:-17.4894,0.0,-290.878:15:13:116:98,12:65,0,3504:1:.:1:.:.:.:-0.0664495	./1:139.46:344:278:10578:15:409:-102.286,-148.657,-1026.97:15:4:343:.:.:.:.:1:.:.:.:-0.107524
chr17	5036784	.	CGG	TGT	1107.17	REJECT	NS=2;DP=467;DPB=474.0;AC=2;AN=3;AF=0.25;RO=372;AO=59;PRO=9.5;PAO=1.5;QR=14078;QA=2198;PQR=259.0;PQA=58.0;SRF=202;SRR=170;SAF=31;SAR=28;SRP=8.98769;SAP=3.34154;AB=0.126338;ABP=569.365;RUN=1;RPP=4.81373;RPPR=28.4375;RPL=33.0;RPR=26.0;EPP=16.2968;EPPR=4.15441;DPRA=0.0;ODDS=33.0394;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=2;MEANALT=3.0;LEN=3;MQM=32.7458;MQMR=57.9409;PAIRED=0.898305;PAIREDR=0.989247;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;JOINED;BaseQRankSum=0.453;Dels=0.0;FS=4.238;HaplotypeScore=19.5655;MLEAC=1;MLEAF=0.5;MQ=54.75;MQRankSum=-10.242;QD=2.83;ReadPosRankSum=3.668;SOR=0.508	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.388:123:94:3500:9:339:-17.4894,-22.6309,-321.917:9:7:122:.:.:.:.:1:.:.:.:-0.0664495	0/1:119.23:346:278:10578:50:1859:-102.286,0.0,-870.695:57:17:345:282,65:1014,0,11001:.:1:1:.:.:.:-0.107524
chr17	5036823	.	T	C	396.069	REJECT	NS=2;DP=426;DPB=426.0;AC=2;AN=4;AF=0.5;RO=351;AO=75;PRO=0.0;PAO=0.0;QR=13027;QA=2829;PQR=0.0;PQA=0.0;SRF=169;SRR=182;SAF=23;SAR=52;SRP=4.05582;SAP=27.3597;AB=0.176056;ABP=391.306;RUN=1;RPP=21.1059;RPPR=43.6001;RPL=50.0;RPR=25.0;EPP=3.73412;EPPR=5.73856;DPRA=0.0;ODDS=31.7889;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=28.76;MQMR=54.3105;PAIRED=0.813333;PAIREDR=0.988604;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.053;Dels=0.0;FS=15.283;HaplotypeScore=2.9628;MLEAC=1;MLEAF=0.5;MQ=51.64;MQRankSum=-8.31;QD=1.83;ReadPosRankSum=-3.085;SOR=1.664	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:132.186:118:94:3431:24:913:-14.2331,0.0,-277.437:24:20:118:.:.:.:.:1:.:.:.:-0.0664495	0/1:129.501:308:257:9596:51:1916:-35.1415,0.0,-769.215:51:17:308:257,51:591,0,9724:.:1:1:.:.:.:-0.107524
chr17	5036834	.	G	A	202.76999999999998	PASS	DP=188;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.0395;Dels=0.0;FS=20.192;HaplotypeScore=5.8956;MLEAC=1;MLEAF=0.5;MQ=52.315;MQRankSum=-6.159;QD=0.915;ReadPosRankSum=0.146;SOR=3.1885;ClippingRankSum=0.631	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:80,8:88:83.0:83,0,3401:8:9:88:1:.:.:.:.:.:-0.0664495	0/1:250,39:289:99.0:379,0,9848:39:13:289:.:1:.:.:.:.:-0.107524
chr17	5036834	.	GGAAG	AGAAA	304.109	REJECT	NS=2;DP=359;DPB=378.4;AC=2;AN=4;AF=0.5;RO=308;AO=49;PRO=30.0;PAO=10.0;QR=11685;QA=1820;PQR=1011.0;PQA=272.0;SRF=145;SRR=163;SAF=11;SAR=38;SRP=5.29458;SAP=35.3165;AB=0.13649;ABP=415.052;RUN=1;RPP=10.4997;RPPR=88.3181;RPL=31.0;RPR=18.0;EPP=4.11819;EPPR=12.1474;DPRA=0.0;ODDS=26.8134;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=2.0;LEN=5;MQM=25.5714;MQMR=52.6818;PAIRED=0.979592;PAIREDR=0.987013;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.403:90:71:2665:18:664:-13.6477,0.0,-245.529:18:20:89:.:.:1:.:.:.:-0.0664495	0/1:136.211:269:237:9020:31:1156:-26.0921,0.0,-776.746:31:12:268:.:.:1:.:.:.:-0.107524
chr17	5036838	.	G	A	98.77000000000001	PASS	DP=178;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.1025;Dels=0.0;FS=16.7785;HaplotypeScore=4.9291;MLEAC=1;MLEAF=0.5;MQ=51.93;MQRankSum=-6.346;QD=0.65;ReadPosRankSum=1.001;SOR=3.1105;ClippingRankSum=-1.034	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:72,8:80:95.0:95,0,3277:8:10:80:1:.:.:.:.:.:-0.0664495	0/1:245,31:276:99.0:159,0,9663:31:11:276:.:1:.:.:.:.:-0.107524
chr17	5036843	.	C	A	56.8097	REJECT;LowQual	NS=2;DP=310;DPB=356.0;AC=2;AN=4;AF=0.375;RO=307;AO=49;PRO=0.0;PAO=0.0;QR=11789;QA=1790;PQR=0.0;PQA=0.0;SRF=134;SRR=173;SAF=9;SAR=40;SRP=13.7686;SAP=45.5977;AB=0.217391;ABP=66.8327;RUN=1;RPP=6.59988;RPPR=69.562;RPL=29.0;RPR=20.0;EPP=4.11819;EPPR=8.16666;DPRA=0.0;ODDS=13.0809;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=26.0612;MQMR=52.5016;PAIRED=1.0;PAIREDR=0.990228;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.809;Dels=0.0;FS=20.9915;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=51.65;MQRankSum=-6.465;QD=1.08;ReadPosRankSum=0.646;SOR=3.5105;ClippingRankSum=-0.458	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:77.90485:86:72:2762:20:739:-11.8179,0.0,-223.845:15:17:86:70,10:193,0,2920:1:.:1:.:.:.:-0.0664495	0/1:76.08035:264:235:9027:29:1051:0.0,-5.86112,-730.526:29:11:264:235,29:54,0,9218:.:1:0:.:.:.:-0.107524
chr17	5058808	.	G	A	14376.5	REJECT	NS=2;DP=376;DPB=431.0;AC=4;AN=4;AF=1.0;RO=0;AO=431;PRO=0.0;PAO=0.0;QR=0;QA=16605;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=249;SAR=182;SRP=0.0;SAP=25.6269;AB=0.0;ABP=0.0;RUN=1;RPP=3.01534;RPPR=0.0;RPL=215.0;RPR=216.0;EPP=3.05564;EPPR=0.0;DPRA=0.0;ODDS=72.2785;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7285;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7768;MLEAC=2;MLEAF=1.0;MQ=59.76;QD=29.725;SOR=1.036	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:0:0:109:4147:-373.199,-29.5151,0.0:107:100:107:0,106:4363,318,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:322:0:0:322:12458:-1120.34,-87.2103,0.0:322:100:322:0,322:13911,957,0:.:1:1:.:.:.:-0.107524
chr17	5066305	.	A	T	12101.2	REJECT	NS=2;DP=321;DPB=368.0;AC=4;AN=4;AF=1.0;RO=0;AO=368;PRO=0.0;PAO=0.0;QR=0;QA=14094;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=121;SAR=247;SRP=0.0;SAP=96.6905;AB=0.0;ABP=0.0;RUN=1;RPP=13.4192;RPPR=0.0;RPL=205.0;RPR=163.0;EPP=14.4341;EPPR=0.0;DPRA=0.0;ODDS=61.136;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.4049;MQMR=0.0;PAIRED=0.98913;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.7956;MLEAC=2;MLEAF=1.0;MQ=59.495;QD=25.99;SOR=1.553	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.251:90:0:0:91:3492:-311.933,-24.676,0.0:90:100:90:0,89:3632,268,0:1:.:1:.:.:.:-0.0664495	1/1:122.251:276:0:0:277:10602:-950.789,-75.0252,0.0:276:100:276:0,275:11762,819,0:.:1:1:.:.:.:-0.107524
chr17	5072316	.	C	T	8670.445	REJECT	NS=2;DP=235;DPB=267.0;AC=4;AN=4;AF=1.0;RO=0;AO=267;PRO=0.0;PAO=0.0;QR=0;QA=10111;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=76;SAR=191;SRP=0.0;SAP=110.567;AB=0.0;ABP=0.0;RUN=1;RPP=31.3208;RPPR=0.0;RPL=163.0;RPR=104.0;EPP=11.867;EPPR=0.0;DPRA=0.0;ODDS=44.5676;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=55.9551;MQMR=0.0;PAIRED=0.985019;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=2;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=56.355;QD=31.885;SOR=2.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:63:0:0:65:2424:-211.986,-17.4804,0.0:63:100:63:0,62:2508,185,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:203:0:0:202:7687:-684.862,-54.6876,0.0:202:99:203:2,202:8588,596,0:.:1:1:.:.:.:-0.107524
chr17	6005356	.	G	A	3710.3900000000003	REJECT	NS=2;DP=221;DPB=251.0;AC=2;AN=4;AF=0.5;RO=121;AO=130;PRO=0.0;PAO=0.0;QR=4578;QA=4999;PQR=0.0;PQA=0.0;SRF=75;SRR=46;SAF=69;SAR=61;SRP=18.1029;SAP=4.07933;AB=0.517928;ABP=3.71105;RUN=1;RPP=48.1769;RPPR=39.3511;RPL=39.0;RPR=91.0;EPP=4.68066;EPPR=12.5038;DPRA=0.0;ODDS=186.085;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.326;Dels=0.0;FS=5.9765;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1705;QD=18.615;ReadPosRankSum=0.351;SOR=0.688;ClippingRankSum=0.518	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.091:60:29:1112:31:1171:-89.2254,0.0,-83.8869:31:52:60:29,31:1098,0,938:1:.:1:.:.:.:-0.0664495	0/1:124.091:191:92:3466:99:3828:-293.025,0.0,-260.095:99:52:191:92,99:3733,0,3311:.:1:1:.:.:.:-0.107524
chr17	7472884	.	G	A	13693.9	REJECT	NS=2;DP=361;DPB=407.0;AC=4;AN=4;AF=1.0;RO=1;AO=406;PRO=0.0;PAO=0.0;QR=2;QA=15557;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=173;SAR=233;SRP=5.18177;SAP=22.2647;AB=0.0;ABP=0.0;RUN=1;RPP=10.7335;RPPR=5.18177;RPL=222.0;RPR=184.0;EPP=5.14968;EPPR=5.18177;DPRA=0.0;ODDS=60.8883;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980296;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.8;SOR=1.0805	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:86:1:2:87:3308:-298.012,-23.6653,0.0:85:99:86:0,84:3498,253,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:317:0:0:319:12249:-1101.7,-86.3772,0.0:317:100:317:0,315:13481,930,0:.:1:1:.:.:.:-0.107524
chr17	7473457	.	C	A	13289.5	REJECT	NS=2;DP=352;DPB=400.0;AC=4;AN=4;AF=1.0;RO=0;AO=400;PRO=0.0;PAO=0.0;QR=0;QA=15254;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=195;SAR=205;SRP=0.0;SAP=3.55317;AB=0.0;ABP=0.0;RUN=1;RPP=3.03201;RPPR=0.0;RPL=199.0;RPR=201.0;EPP=3.79203;EPPR=0.0;DPRA=0.0;ODDS=63.5695;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8288;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.12;SOR=0.79	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0335:94:0:0:95:3635:-327.191,-25.7328,0.0:94:100:94:0,94:3906,282,0:1:.:1:.:.:.:-0.0664495	1/1:126.0335:304:0:0:305:11619:-1045.06,-82.5788,0.0:304:100:304:0,304:12928,897,0:.:1:1:.:.:.:-0.107524
chr17	7474277	.	C	T	13581.2	REJECT	NS=2;DP=367;DPB=422.0;AC=4;AN=4;AF=1.0;RO=0;AO=420;PRO=0.0;PAO=0.0;QR=0;QA=15832;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=198;SAR=222;SRP=0.0;SAP=5.98832;AB=0.0;ABP=0.0;RUN=1;RPP=3.19643;RPPR=0.0;RPL=207.0;RPR=213.0;EPP=31.3222;EPPR=0.0;DPRA=0.0;ODDS=72.297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997619;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8378;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.15;SOR=0.8165	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:0:0:109:4117:-370.546,-29.5231,0.0:107:100:107:0,106:4188,318,0:1:.:1:.:.:.:-0.0664495	1/1:129.501:313:0:0:311:11715:-1053.7,-84.1751,0.0:311:100:311:0,311:13022,909,0:.:1:1:.:.:.:-0.107524
chr17	7578115	.	T	C	4111.915	REJECT	NS=2;DP=252;DPB=290.0;AC=2;AN=4;AF=0.5;RO=142;AO=148;PRO=0.0;PAO=0.0;QR=5448;QA=5717;PQR=0.0;PQA=0.0;SRF=98;SRR=44;SAF=102;SAR=46;SRP=47.6019;SAP=49.022;AB=0.510345;ABP=3.27986;RUN=1;RPP=36.8148;RPPR=77.9414;RPL=50.0;RPR=98.0;EPP=6.76636;EPPR=3.07147;DPRA=0.0;ODDS=211.809;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992958;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5225;Dels=0.0;FS=5.083;HaplotypeScore=4.9098;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0075;QD=19.18;ReadPosRankSum=1.3295;SOR=1.0015;ClippingRankSum=1.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:34:1277:40:1546:-119.141,0.0,-94.9366:40:54:73:33,40:1467,0,1092:1:.:1:.:.:.:-0.0664495	0/1:129.501:215:108:4171:108:4171:-316.695,0.0,-316.718:108:50:215:107,108:4037,0,3980:.:1:1:.:.:.:-0.107524
chr17	7579472	.	G	C	6696.665000000001	REJECT	NS=2;DP=411;DPB=473.0;AC=2;AN=4;AF=0.5;RO=224;AO=247;PRO=0.0;PAO=0.0;QR=8604;QA=9320;PQR=0.0;PQA=0.0;SRF=109;SRR=115;SAF=118;SAR=129;SRP=3.35929;SAP=4.07406;AB=0.522199;ABP=5.03487;RUN=1;RPP=11.4588;RPPR=4.40625;RPL=108.0;RPR=139.0;EPP=16.382;EPPR=3.97971;DPRA=0.0;ODDS=348.109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991071;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.2145;Dels=0.0;FS=2.074;HaplotypeScore=10.8093;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.308;QD=18.725;ReadPosRankSum=0.2975;SOR=0.5885;ClippingRankSum=0.447	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:53:2057:70:2657:-205.792,0.0,-151.777:69:56:122:53,68:2352,0,1888:1:.:1:.:.:.:-0.0664495	0/1:129.501:349:171:6547:177:6663:-505.037,0.0,-495.054:177:51:348:171,177:6398,0,6330:.:1:1:.:.:.:-0.107524
chr17	7579643	.	CCCCCAGCCCTCCAGGT	C	1000.74	REJECT	NS=2;DP=347;DPB=320.667;AC=2;AN=4;AF=0.5;RO=242;AO=87;PRO=85.1667;PAO=3.66667;QR=9078;QA=2641;PQR=3059.5;PQA=110.0;SRF=136;SRR=106;SAF=45;SAR=42;SRP=11.086;SAP=3.23494;AB=0.25072;ABP=190.301;RUN=1;RPP=73.1214;RPPR=35.3132;RPL=17.0;RPR=70.0;EPP=3.23494;EPPR=4.30242;DPRA=0.0;ODDS=63.3287;GTI=0;TYPE=del;CIGAR=1M16D1M;NUMALT=2;MEANALT=4.0;LEN=16;MQM=60.9195;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995868;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=7579659;HOMLEN=25;HOMSEQ=CCCCAGCCCTCCAGGTCCCCAGCCC;SVLEN=-16;SVTYPE=DEL;BaseQRankSum=0.499;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=1.874;QD=13.94;ReadPosRankSum=1.585;SOR=0.796;ClippingRankSum=0.158	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:63,63:48:47:102:129.501:100:71:2662:26:748:-30.7604,0.0,-324.935:1835,0,7605:1:.:1:1:.:.:-0.0664495	0/1:174,203:132:39:311:160.002:249:171:6416:61:1893:-82.2927,0.0,-789.661:.:.:.:1:1:.:.:-0.107524
chr17	7579651	.	CCTCCAGGT	C	1000.74	REJECT	NS=2;DP=347;DPB=320.667;AC=2;AN=2;AF=0.0;RO=242;AO=14;PRO=85.1667;PAO=22.1667;QR=9078;QA=411;PQR=3059.5;PQA=765.5;SRF=136;SRR=106;SAF=6;SAR=8;SRP=11.086;SAP=3.63072;AB=0.0403458;ABP=639.815;RUN=1;RPP=25.3454;RPPR=35.3132;RPL=1.0;RPR=13.0;EPP=3.0103;EPPR=4.30242;DPRA=0.0;ODDS=63.3287;GTI=0;TYPE=del;CIGAR=9M8D1M;NUMALT=2;MEANALT=4.0;LEN=8;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995868;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:98:71:2662:1:38:-30.7604,-51.1921,-318.168:1:1:98:.:.:1:.:.:.:-0.0664495	./1:160.002:249:171:6416:13:373:-82.2927,-105.649,-781.188:13:5:245:.:.:1:.:.:.:-0.107524
chr17	7580256	.	A	AT	2090.4	REJECT	NS=2;DP=263;DPB=345.125;AC=2;AN=2;AF=0.0;RO=82;AO=16;PRO=54.25;PAO=47.25;QR=2773;QA=403;PQR=1924.83;PQA=1675.83;SRF=20;SRR=62;SAF=2;SAR=14;SRP=49.7234;SAP=22.5536;AB=0.0608365;ABP=443.588;RUN=1;RPP=3.0103;RPPR=3.11623;RPL=8.0;RPR=8.0;EPP=5.18177;EPPR=26.8435;DPRA=0.0;ODDS=147.474;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=19.0;LEN=1;MQM=57.5;MQMR=59.7439;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:69:26:880:1:27:-68.551,-70.9192,-151.323:1:2:59:.:.:1:.:.:.:-0.0664495	./1:160.002:194:56:1893:15:376:-149.836,-134.0,-303.138:15:10:155:.:.:1:.:.:.:-0.107524
chr17	7580256	.	AT	A	1768.065	REJECT	NS=2;DP=263;DPB=345.125;AC=2;AN=4;AF=0.5;RO=82;AO=88;PRO=54.25;PAO=53.25;QR=2773;QA=2565;PQR=1924.83;PQA=1843.83;SRF=20;SRR=62;SAF=28;SAR=60;SRP=49.7234;SAP=28.2783;AB=0.334601;ABP=65.5041;RUN=1;RPP=7.84676;RPPR=3.11623;RPL=51.0;RPR=37.0;EPP=11.0053;EPPR=26.8435;DPRA=0.0;ODDS=147.474;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=19.0;LEN=1;MQM=59.3409;MQMR=59.7439;PAIRED=0.965909;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.882;FS=2.3205;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=0.3125;QD=4.92;RPA=16,15;RU=T;ReadPosRankSum=-0.0665;SOR=0.456;STR;ClippingRankSum=0.243	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:26:880:24:738:-68.551,0.0,-78.833:31:49:63:29,38:546,0,505:1:.:1:.:.:.:-0.0664495	0/1:129.501:247:56:1893:64:1827:-149.836,0.0,-247.65:87:45:187:109,111:1483,0,1445:.:1:1:.:.:.:-0.107524
chr17	7580256	.	ATT	A	2090.4	REJECT	NS=2;DP=263;DPB=345.125;AC=2;AN=2;AF=0.0;RO=82;AO=28;PRO=54.25;PAO=35.25;QR=2773;QA=870;PQR=1924.83;PQA=1228.5;SRF=20;SRR=62;SAF=7;SAR=21;SRP=49.7234;SAP=18.2106;AB=0.106464;ABP=356.795;RUN=1;RPP=10.7656;RPPR=3.11623;RPL=19.0;RPR=9.0;EPP=4.25114;EPPR=26.8435;DPRA=0.0;ODDS=147.474;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=3;MEANALT=19.0;LEN=2;MQM=59.8929;MQMR=59.7439;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:69:26:880:8:233:-68.551,-61.3907,-184.194:8:14:59:.:.:1:.:.:.:-0.0664495	./1:160.002:194:56:1893:20:637:-149.836,-123.223,-453.069:20:13:155:.:.:1:.:.:.:-0.107524
chr17	7582141	.	C	T	451.142	REJECT	NS=2;DP=201;DPB=228.444;AC=2;AN=2;AF=0.0;RO=115;AO=13;PRO=16.3;PAO=9.96667;QR=4224;QA=260;PQR=558.483;PQA=317.233;SRF=73;SRR=42;SAF=1;SAR=12;SRP=21.1563;SAP=23.2217;AB=0.0646766;ABP=333.863;RUN=1;RPP=31.2394;RPPR=16.7755;RPL=0.0;RPR=13.0;EPP=23.2217;EPPR=18.8904;DPRA=0.0;ODDS=20.9453;GTI=0;TYPE=snp;CIGAR=1X17M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.959:42:22:817:2:28:-13.0321,-22.9916,-160.035:2:5:39:.:.:1:.:.:.:-0.0664495	./1:160.002:159:93:3407:11:232:-40.1865,-56.9675,-448.726:11:7:152:.:.:1:.:.:.:-0.107524
chr17	7582141	.	C	CT	451.142	REJECT	NS=2;DP=201;DPB=228.444;AC=2;AN=2;AF=0.0;RO=115;AO=18;PRO=16.3;PAO=15.3;QR=4224;QA=573;PQR=558.483;PQA=525.483;SRF=73;SRR=42;SAF=13;SAR=5;SRP=21.1563;SAP=10.7311;AB=0.0895522;ABP=297.131;RUN=1;RPP=15.074;RPPR=16.7755;RPL=4.0;RPR=14.0;EPP=3.0103;EPPR=18.8904;DPRA=0.0;ODDS=20.9453;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.888889;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.959:42:22:817:4:131:-13.0321,-8.28382,-74.8693:4:10:39:.:.:1:.:.:.:-0.0664495	./1:160.002:159:93:3407:14:442:-40.1865,-26.6245,-310.039:14:9:152:.:.:1:.:.:.:-0.107524
chr17	7582141	.	CT	C	371.43600000000004	REJECT	NS=2;DP=186;DPB=228.444;AC=2;AN=4;AF=0.5;RO=115;AO=35;PRO=16.3;PAO=12.6333;QR=4224;QA=1079;PQR=558.483;PQA=421.15;SRF=73;SRR=42;SAF=20;SAR=15;SRP=21.1563;SAP=4.56135;AB=0.174129;ABP=188.407;RUN=1;RPP=10.5174;RPPR=16.7755;RPL=12.0;RPR=23.0;EPP=25.4075;EPPR=18.8904;DPRA=0.0;ODDS=20.9453;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=60.5714;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.1585;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.065;MQRankSum=0.4825;QD=2.035;RPA=13,12;RU=T;ReadPosRankSum=0.2345;SOR=0.6085;STR;ClippingRankSum=-0.915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:94.9795:40:22:817:8:241:-13.0321,0.0,-72.0097:10:26:38:26,12:141,0,554:1:.:1:.:.:.:-0.0664495	0/1:129.501:164:93:3407:27:838:-40.1865,0.0,-305.556:31:20:156:125,36:329,0,2324:.:1:1:.:.:.:-0.107524
chr17	7582141	.	CTT	C	451.142	REJECT	NS=2;DP=201;DPB=228.444;AC=2;AN=2;AF=0.0;RO=115;AO=10;PRO=16.3;PAO=11.8;QR=4224;QA=303;PQR=558.483;PQA=389.65;SRF=73;SRR=42;SAF=5;SAR=5;SRP=21.1563;SAP=3.0103;AB=0.0497512;ABP=356.939;RUN=1;RPP=3.0103;RPPR=16.7755;RPL=5.0;RPR=5.0;EPP=10.8276;EPPR=18.8904;DPRA=0.0;ODDS=20.9453;GTI=0;TYPE=del;CIGAR=1M2D15M;NUMALT=4;MEANALT=8.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:90.959:42:22:817:3:101:-13.0321,-11.2562,-84.5862:3:8:39:.:.:1:.:.:.:-0.0664495	./1:160.002:159:93:3407:7:202:-40.1865,-54.7944,-399.902:7:5:152:.:.:1:.:.:.:-0.107524
chr17	7582240	.	G	T	216.711	REJECT	NS=2;DP=100;DPB=146.238;AC=2;AN=2;AF=0.0;RO=50;AO=8;PRO=25.3833;PAO=10.8;QR=1750;QA=124;PQR=874.617;PQA=214.2;SRF=15;SRR=35;SAF=0;SAR=8;SRP=20.3821;SAP=20.3821;AB=0.08;ABP=156.229;RUN=1;RPP=7.35324;RPPR=14.1282;RPL=6.0;RPR=2.0;EPP=7.35324;EPPR=7.35324;DPRA=0.0;ODDS=15.0499;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=45.75;MQMR=59.02;PAIRED=1.0;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:65.359:25:13:437:3:42:-7.10461,-21.5943,-215.509:3:14:22:.:.:1:.:.:.:-0.0664495	./1:133.737:75:37:1313:5:82:-19.2966,-57.0524,-594.191:5:8:66:.:.:1:.:.:.:-0.107524
chr17	7582240	.	G	GT	216.711	REJECT	NS=2;DP=100;DPB=146.238;AC=2;AN=4;AF=0.5;RO=50;AO=16;PRO=25.3833;PAO=19.8833;QR=1750;QA=469;PQR=874.617;PQA=655.617;SRF=15;SRR=35;SAF=9;SAR=7;SRP=20.3821;SAP=3.55317;AB=0.16;ABP=103.419;RUN=1;RPP=3.55317;RPPR=14.1282;RPL=9.0;RPR=7.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=15.0499;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=59.1875;MQMR=59.02;PAIRED=1.0;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:65.359:25:13:437:3:93:-7.10461,0.0,-37.6408:3:14:22:.:.:1:.:.:.:-0.0664495	0/1:133.737:75:37:1313:13:376:-19.2966,0.0,-123.778:13:20:66:.:.:1:.:.:.:-0.107524
chr17	7582240	.	G	GTT	216.711	REJECT	NS=2;DP=100;DPB=146.238;AC=2;AN=2;AF=0.0;RO=50;AO=4;PRO=25.3833;PAO=17.8833;QR=1750;QA=119;PQR=874.617;PQA=600.617;SRF=15;SRR=35;SAF=2;SAR=2;SRP=20.3821;SAP=3.0103;AB=0.0533333;ABP=132.98;RUN=1;RPP=3.0103;RPPR=14.1282;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=7.35324;DPRA=0.0;ODDS=15.0499;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=4;MEANALT=11.0;LEN=2;MQM=56.0;MQMR=59.02;PAIRED=0.75;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:65.359:25:13:437:0:0:-7.10461,-10.904,-49.6186:0:0:22:.:.:1:.:.:.:-0.0664495	./1:133.737:75:37:1313:4:119:-19.2966,-21.7889,-148.226:4:6:66:.:.:1:.:.:.:-0.107524
chr17	7582240	.	GT	G	216.711	REJECT	NS=2;DP=100;DPB=146.238;AC=2;AN=2;AF=0.0;RO=50;AO=10;PRO=25.3833;PAO=14.05;QR=1750;QA=278;PQR=874.617;PQA=475.95;SRF=15;SRR=35;SAF=3;SAR=7;SRP=20.3821;SAP=6.48466;AB=0.1;ABP=141.985;RUN=1;RPP=3.0103;RPPR=14.1282;RPL=5.0;RPR=5.0;EPP=3.87889;EPPR=7.35324;DPRA=0.0;ODDS=15.0499;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=8.5;LEN=1;MQM=59.7;MQMR=59.02;PAIRED=1.0;PAIREDR=0.98;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:65.359:25:13:437:3:44:-7.10461,-9.3776,-64.3595:3:14:22:.:.:1:.:.:.:-0.0664495	./1:133.737:75:37:1313:7:234:-19.2966,-18.5622,-218.989:7:11:66:.:.:1:.:.:.:-0.107524
chr17	7582606	.	T	TTTTTA	555.396	REJECT	NS=2;DP=56;DPB=194.24;AC=2;AN=4;AF=0.5;RO=32;AO=21;PRO=135.5;PAO=131.5;QR=1215;QA=738;PQR=4934.0;PQA=4784.0;SRF=8;SRR=24;SAF=3;SAR=18;SRP=20.3821;SAP=26.2761;AB=0.375;ABP=10.6105;RUN=1;RPP=3.94093;RPPR=9.79615;RPL=12.0;RPR=9.0;EPP=3.1137;EPPR=3.28173;DPRA=0.0;ODDS=30.1367;GTI=0;TYPE=ins;CIGAR=1M5I49M;NUMALT=1;MEANALT=2.5;LEN=5;MQM=60.4762;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;END=7582606;HOMLEN=44;HOMSEQ=TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT;SVLEN=5;SVTYPE=INS;BaseQRankSum=-0.222;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=3.065;QD=4.58;ReadPosRankSum=1.111;SOR=0.495;ClippingRankSum=-0.844	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:10,8:7:45:15:114.626:15:7:268:6:206:-14.2132,0.0,-29.8931:303,0,500:1:.:1:.:.:.:-0.0664495	0/1:151,44:29:30:117:138.939:43:25:947:15:532:-48.4528,0.0,-89.2182:.:.:.:1:1:.:.:-0.107524
chr17	7583227	.	G	A	2352.025	REJECT	NS=2;DP=489;DPB=557.0;AC=2;AN=4;AF=0.5;RO=441;AO=116;PRO=0.0;PAO=0.0;QR=16959;QA=4384;PQR=0.0;PQA=0.0;SRF=225;SRR=216;SAF=51;SAR=65;SRP=3.40914;SAP=6.67934;AB=0.208259;ABP=414.791;RUN=1;RPP=3.68421;RPPR=5.61508;RPL=61.0;RPR=55.0;EPP=10.4981;EPPR=7.74224;DPRA=0.0;ODDS=83.2783;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997732;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.936;Dels=0.0;FS=3.882;HaplotypeScore=5.7708;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.863;QD=9.56;ReadPosRankSum=0.791;SOR=1.0275;ClippingRankSum=0.555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8145:133:64:2453:72:2707:-206.749,0.0,-184.274:70:52:133:63,68:2365,0,2157:1:.:1:.:.:.:-0.0664495	0/1:118.8145:421:377:14506:44:1677:-36.8508,0.0,-1190.58:44:10:421:377,44:626,0,14899:.:1:1:.:.:.:-0.107524
chr17	7583814	.	C	T	426.859	REJECT	NS=2;DP=176;DPB=243.238;AC=2;AN=2;AF=0.0;RO=87;AO=22;PRO=50.0833;PAO=1.25;QR=3128;QA=328;PQR=1796.22;PQA=31.55;SRF=35;SRR=52;SAF=0;SAR=22;SRP=10.2236;SAP=50.7827;AB=0.125;ABP=217.986;RUN=1;RPP=17.2236;RPPR=121.842;RPL=17.0;RPR=5.0;EPP=17.2236;EPPR=6.03039;DPRA=0.0;ODDS=43.0416;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=58.9545;MQMR=59.1954;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.247:46:19:683:5:84:-25.9005,-56.5623,-455.313:5:13:40:.:.:1:.:.:.:-0.0664495	./1:133.247:130:68:2445:17:244:-29.8458,-111.098,-1190.1:17:15:117:.:.:1:.:.:.:-0.107524
chr17	7583814	.	C	CT	426.859	REJECT	NS=2;DP=176;DPB=243.238;AC=2;AN=2;AF=0.0;RO=87;AO=10;PRO=50.0833;PAO=33.0833;QR=3128;QA=362;PQR=1796.22;PQA=1185.22;SRF=35;SRR=52;SAF=7;SAR=3;SRP=10.2236;SAP=6.48466;AB=0.0568182;ABP=303.266;RUN=1;RPP=10.8276;RPPR=121.842;RPL=8.0;RPR=2.0;EPP=3.0103;EPPR=6.03039;DPRA=0.0;ODDS=43.0416;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.1954;PAIRED=0.8;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.247:46:19:683:1:39:-25.9005,-25.9277,-96.3388:1:3:40:.:.:1:.:.:.:-0.0664495	./1:133.247:130:68:2445:9:323:-29.8458,-22.204,-263.186:9:8:117:.:.:1:.:.:.:-0.107524
chr17	7583814	.	CT	C	426.859	REJECT	NS=2;DP=176;DPB=243.238;AC=2;AN=4;AF=0.5;RO=87;AO=29;PRO=50.0833;PAO=30.0833;QR=3128;QA=960;PQR=1796.22;PQA=1060.22;SRF=35;SRR=52;SAF=12;SAR=17;SRP=10.2236;SAP=4.88226;AB=0.164773;ABP=174.803;RUN=1;RPP=65.983;RPPR=121.842;RPL=29.0;RPR=0.0;EPP=4.88226;EPPR=6.03039;DPRA=0.0;ODDS=43.0416;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=59.1954;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.501;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.661;QD=3.17;ReadPosRankSum=1.381;SOR=0.77;ClippingRankSum=-1.381	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.1235:43:19:683:11:355:-25.9005,0.0,-86.0009:14:34:40:24,17:259,0,454:1:.:1:.:.:.:-0.0664495	0/1:133.247:130:68:2445:18:605:-29.8458,0.0,-280.936:18:15:117:.:.:.:.:1:.:.:.:-0.107524
chr17	7583814	.	CTT	C	426.859	REJECT	NS=2;DP=176;DPB=243.238;AC=2;AN=2;AF=0.0;RO=87;AO=9;PRO=50.0833;PAO=23.5;QR=3128;QA=295;PQR=1796.22;PQA=831.8;SRF=35;SRR=52;SAF=3;SAR=6;SRP=10.2236;SAP=5.18177;AB=0.0511364;ABP=311.014;RUN=1;RPP=22.5536;RPPR=121.842;RPL=9.0;RPR=0.0;EPP=5.18177;EPPR=6.03039;DPRA=0.0;ODDS=43.0416;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=4;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=59.1954;PAIRED=1.0;PAIREDR=0.965517;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.247:46:19:683:4:139:-25.9005,-24.2275,-129.663:4:10:40:.:.:1:.:.:.:-0.0664495	./1:133.247:130:68:2445:5:156:-29.8458,-47.8774,-412.514:5:4:117:.:.:1:.:.:.:-0.107524
chr17	7585116	.	CT	C	43.3047	REJECT	NS=2;DP=10;DPB=13.3333;AC=2;AN=4;AF=0.5;RO=5;AO=4;PRO=3.5;PAO=2.5;QR=176;QA=129;PQR=124.5;PQA=90.5;SRF=5;SRR=0;SAF=4;SAR=0;SRP=13.8677;SAP=11.6962;AB=0.4;ABP=3.87889;RUN=1;RPP=5.18177;RPPR=3.44459;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=3.44459;DPRA=0.0;ODDS=3.01415;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=56.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:13.2895:3:2:69:1:35:-2.38821,0.0,-5.4265:1:33:3:.:.:1:.:.:.:-1.48414	0/1:41.8204:7:3:107:3:94:-6.63067,0.0,-10.8302:3:50:6:.:.:1:.:.:.:-0.107524
chr17	7585525	.	C	T	38.8631	REJECT	NS=2;DP=54;DPB=127.759;AC=2;AN=2;AF=0.0;RO=7;AO=19;PRO=39.5167;PAO=19.1;QR=236;QA=354;PQR=1423.48;PQA=451.15;SRF=2;SRR=5;SAF=0;SAR=19;SRP=5.80219;SAP=44.2683;AB=0.351852;ABP=13.3047;RUN=1;RPP=28.7251;RPPR=10.7656;RPL=2.0;RPR=17.0;EPP=28.7251;EPPR=3.32051;DPRA=0.0;ODDS=4.40876;GTI=0;TYPE=snp;CIGAR=1X28M;NUMALT=4;MEANALT=10.5;LEN=1;MQM=50.0526;MQMR=52.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.0761:15:2:69:5:130:-2.34067,-28.3163,-465.618:5:56:9:.:.:1:.:.:.:-1.48414	./1:37.5111:39:5:167:14:224:-5.11915,-53.7305,-858.953:14:47:30:.:.:1:.:.:.:-0.107524
chr17	7585525	.	C	CT	38.8631	REJECT	NS=2;DP=54;DPB=127.759;AC=2;AN=4;AF=0.5;RO=7;AO=4;PRO=39.5167;PAO=39.0167;QR=236;QA=83;PQR=1423.48;PQA=1339.48;SRF=2;SRR=5;SAF=2;SAR=2;SRP=5.80219;SAP=3.0103;AB=0.0740741;ABP=88.0998;RUN=1;RPP=3.0103;RPPR=10.7656;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=3.32051;DPRA=0.0;ODDS=4.40876;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=4;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=52.1429;PAIRED=0.75;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:19.0761:15:2:69:1:35:-2.34067,0.0,-5.40515:1:11:9:.:.:1:.:.:.:-1.48414	0/1:37.5111:39:5:167:3:48:-5.11915,0.0,-24.0618:3:10:30:.:.:1:.:.:.:-0.107524
chr17	7585525	.	CT	C	38.8631	REJECT	NS=2;DP=54;DPB=127.759;AC=2;AN=2;AF=0.0;RO=7;AO=4;PRO=39.5167;PAO=29.85;QR=236;QA=110;PQR=1423.48;PQA=1070.15;SRF=2;SRR=5;SAF=2;SAR=2;SRP=5.80219;SAP=3.0103;AB=0.0740741;ABP=88.0998;RUN=1;RPP=11.6962;RPPR=10.7656;RPL=4.0;RPR=0.0;EPP=3.0103;EPPR=3.32051;DPRA=0.0;ODDS=4.40876;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=4;MEANALT=10.5;LEN=1;MQM=50.0;MQMR=52.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.0761:15:2:69:1:40:-2.34067,-3.61514,-49.8983:1:11:9:.:.:1:.:.:.:-1.48414	./1:37.5111:39:5:167:3:70:-5.11915,-11.8269,-146.895:3:10:30:.:.:1:.:.:.:-0.107524
chr17	7585548	.	G	T	38.8631	REJECT	NS=2;DP=54;DPB=127.759;AC=2;AN=2;AF=0.0;RO=7;AO=5;PRO=39.5167;PAO=31.5167;QR=236;QA=34;PQR=1423.48;PQA=1085.73;SRF=2;SRR=5;SAF=5;SAR=0;SRP=5.80219;SAP=13.8677;AB=0.128205;ABP=49.8362;RUN=1;RPP=6.91895;RPPR=10.7656;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=3.32051;DPRA=0.0;ODDS=4.40876;GTI=0;TYPE=snp;CIGAR=23M1X5M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=52.1429;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:19.0761:15:2:69:0:0:-2.34067,-7.22489,-61.5467:0:0:9:.:.:1:.:.:.:-1.48414	./1:37.5111:39:5:167:5:34:-5.11915,-25.635,-266.086:5:17:30:.:.:1:.:.:.:-0.107524
chr17	7586422	.	A	AT	79.806	REJECT	NS=2;DP=27;DPB=30.1364;AC=2;AN=3;AF=0.25;RO=12;AO=4;PRO=4.33333;PAO=3.33333;QR=422;QA=104;PQR=127.667;PQA=113.667;SRF=0;SRR=12;SAF=0;SAR=4;SRP=29.068;SAP=11.6962;AB=0.210526;ABP=16.8392;RUN=1;RPP=3.0103;RPPR=5.9056;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=5.9056;DPRA=0.0;ODDS=6.4298;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=58.0;MQMR=59.5;PAIRED=0.75;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:52.1647:8:3:93:0:0:-8.65643,-9.47903,-17.1386:0:0:6:.:.:1:.:.:.:-1.48414	0/1:27.6109:19:9:329:4:104:-5.5919,0.0,-27.2074:4:27:15:.:.:1:.:.:.:-0.107524
chr17	7586422	.	AT	A	79.806	REJECT	NS=2;DP=27;DPB=30.1364;AC=2;AN=3;AF=0.25;RO=12;AO=5;PRO=4.33333;PAO=3.33333;QR=422;QA=186;PQR=127.667;PQA=113.667;SRF=0;SRR=12;SAF=0;SAR=5;SRP=29.068;SAP=13.8677;AB=0.185185;ABP=26.2531;RUN=1;RPP=13.8677;RPPR=5.9056;RPL=5.0;RPR=0.0;EPP=13.8677;EPPR=5.9056;DPRA=0.0;ODDS=6.4298;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=59.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:52.1647:8:3:93:3:113:-8.65643,0.0,-6.8358:3:50:6:.:.:1:.:.:.:-1.48414	./1:27.6109:19:9:329:2:73:-5.5919,-2.24444,-29.9644:2:13:15:.:.:1:.:.:.:-0.107524
chr17	7587687	.	A	G	1566.75	PASS	SOMATIC;NS=2;DP=233;DPB=233.0;AC=1;AN=3;AF=0.25;RO=169;AO=64;PRO=0.0;PAO=0.0;QR=6484;QA=2412;PQR=0.0;PQA=0.0;SRF=127;SRR=42;SAF=52;SAR=12;SRP=95.844;SAP=57.2971;AB=0.353591;ABP=36.7101;RUN=1;RPP=9.66043;RPPR=12.3772;RPL=25.0;RPR=39.0;EPP=3.14602;EPPR=3.02315;DPRA=3.48077;ODDS=33.4792;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.23;Dels=0.0;FS=3.392;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.47;QD=11.69;ReadPosRankSum=-0.663;SOR=1.061	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:133.771:52:52:1997:0:0:0.0,-14.1139,-179.948:0:0:52:52,0:.:0.0:0:.:.:.:0:.:.:0:-1.48414	0/1:119.3615:181:117:4487:64:2412:-167.979,0.0,-354.672:64:35:181:114,62:37.0:0.351:2:2145,0,4471:.:1:1:.:.:1:-0.107524
chr17	7587999	.	T	TA	1306.82	REJECT	NS=2;DP=338;DPB=458.136;AC=2;AN=2;AF=0.0;RO=129;AO=16;PRO=79.0167;PAO=65.0167;QR=4758;QA=514;PQR=2786.62;PQA=2301.62;SRF=42;SRR=87;SAF=3;SAR=13;SRP=37.0974;SAP=16.582;AB=0.0473373;ABP=604.572;RUN=1;RPP=3.55317;RPPR=17.167;RPL=9.0;RPR=7.0;EPP=11.6962;EPPR=11.915;DPRA=0.0;ODDS=23.7268;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=4;MEANALT=27.5;LEN=1;MQM=59.8125;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:103.02:88:35:1278:2:74:-32.6048,-30.4817,-136.933:2:3:69:.:.:1:.:.:.:0.253398	./1:160.002:250:94:3480:14:440:-105.942,-94.6371,-427.129:14:7:206:.:.:1:.:.:.:-0.107524
chr17	7587999	.	TA	T	1306.82	REJECT	NS=2;DP=338;DPB=458.136;AC=2;AN=4;AF=0.5;RO=129;AO=72;PRO=79.0167;PAO=40.0167;QR=4758;QA=2408;PQR=2786.62;PQA=1392.62;SRF=42;SRR=87;SAF=25;SAR=47;SRP=37.0974;SAP=17.6074;AB=0.213018;ABP=244.802;RUN=1;RPP=7.35324;RPPR=17.167;RPL=30.0;RPR=42.0;EPP=8.92153;EPPR=11.915;DPRA=0.0;ODDS=23.7268;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=4;MEANALT=27.5;LEN=1;MQM=60.1389;MQMR=60.0;PAIRED=0.986111;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:103.02:88:35:1278:17:576:-32.6048,0.0,-160.157:17:25:69:.:.:1:.:.:.:0.253398	0/1:160.002:250:94:3480:55:1832:-105.942,0.0,-543.245:55:27:206:.:.:1:.:.:.:-0.107524
chr17	7587999	.	TAA	T	1306.82	REJECT	NS=2;DP=338;DPB=458.136;AC=2;AN=2;AF=0.0;RO=129;AO=38;PRO=79.0167;PAO=35.35;QR=4758;QA=1191;PQR=2786.62;PQA=1190.95;SRF=42;SRR=87;SAF=14;SAR=24;SRP=37.0974;SAP=8.7247;AB=0.112426;ABP=444.012;RUN=1;RPP=5.06748;RPPR=17.167;RPL=22.0;RPR=16.0;EPP=3.23888;EPPR=11.915;DPRA=0.0;ODDS=23.7268;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=4;MEANALT=27.5;LEN=2;MQM=59.4737;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.231;FS=0.752;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=0.239;QD=2.0;RPA=15,13;RU=A;ReadPosRankSum=1.646;SOR=0.57;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:103.02:88:35:1278:13:459:-32.6048,-10.27,-206.599:13:19:69:.:.:.:.:1:.:.:.:0.253398	./1:129.501:303:94:3480:25:732:-105.942,-103.919,-748.971:41:17:231:200,57:755,0,5169:.:1:1:.:.:.:-0.107524
chr17	7587999	.	TAAA	T	1306.82	REJECT	NS=2;DP=338;DPB=458.136;AC=2;AN=2;AF=0.0;RO=129;AO=20;PRO=79.0167;PAO=31.6;QR=4758;QA=615;PQR=2786.62;PQA=1078.2;SRF=42;SRR=87;SAF=8;SAR=12;SRP=37.0974;SAP=4.74748;AB=0.0591716;ABP=573.529;RUN=1;RPP=3.0103;RPPR=17.167;RPL=10.0;RPR=10.0;EPP=3.0103;EPPR=11.915;DPRA=0.0;ODDS=23.7268;GTI=0;TYPE=del;CIGAR=1M3D18M;NUMALT=4;MEANALT=27.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:103.02:88:35:1278:2:76:-32.6048,-46.3637,-270.412:2:3:69:.:.:1:.:.:.:0.253398	./1:160.002:250:94:3480:18:539:-105.942,-127.437,-884.443:18:9:206:.:.:1:.:.:.:-0.107524
chr17	7589621	.	C	CT	381.092	REJECT	NS=2;DP=502;DPB=617.5;AC=2;AN=3;AF=0.25;RO=378;AO=49;PRO=105.333;PAO=65.3333;QR=13938;QA=1609;PQR=3778.0;PQA=2335.0;SRF=196;SRR=182;SAF=23;SAR=26;SRP=4.13625;SAP=3.40914;AB=0.0976096;ABP=709.024;RUN=1;RPP=15.8176;RPPR=8.89281;RPL=33.0;RPR=16.0;EPP=3.05462;EPPR=10.4553;DPRA=0.0;ODDS=1.78242;GTI=1;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:0.675284:120:93:3427:11:336:-1.86447,0.0,-318.512:11:10:111:.:.:1:.:.:.:0.253398	./1:133.439:382:285:10511:38:1273:-42.6949,-20.6573,-965.581:38:10:364:.:.:1:.:.:.:-0.107524
chr17	7589621	.	CT	C	381.092	REJECT	NS=2;DP=502;DPB=617.5;AC=2;AN=3;AF=0.25;RO=378;AO=48;PRO=105.333;PAO=61.3333;QR=13938;QA=1684;PQR=3778.0;PQA=2192.0;SRF=196;SRR=182;SAF=22;SAR=26;SRP=4.13625;SAP=3.73412;AB=0.0956175;ABP=716.032;RUN=1;RPP=5.9056;RPPR=8.89281;RPL=28.0;RPR=20.0;EPP=5.9056;EPPR=10.4553;DPRA=0.0;ODDS=1.78242;GTI=1;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.2083;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992063;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.675284:120:93:3427:7:221:-1.86447,-13.6809,-343.44:7:6:111:.:.:1:.:.:.:0.253398	0/1:133.439:382:285:10511:41:1463:-42.6949,0.0,-1006.0:41:11:364:.:.:1:.:.:.:-0.107524
chr17	8108331	.	A	G	14011.55	REJECT	NS=2;DP=369;DPB=420.0;AC=4;AN=4;AF=1.0;RO=0;AO=420;PRO=0.0;PAO=0.0;QR=0;QA=16047;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=186;SAR=234;SRP=0.0;SAP=14.9224;AB=0.0;ABP=0.0;RUN=1;RPP=4.02365;RPPR=0.0;RPL=217.0;RPR=203.0;EPP=3.03098;EPPR=0.0;DPRA=0.0;ODDS=66.6584;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995238;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.895;SOR=0.943	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:98:0:0:100:3804:-342.377,-27.0743,0.0:98:100:98:0,96:4396,298,0:1:.:1:.:.:.:0.000295696	1/1:129.501:319:0:0:320:12243:-1101.18,-86.6549,0.0:319:100:319:0,319:13671,948,0:.:1:1:.:.:.:-0.107524
chr17	8108339	.	G	A	13773.75	REJECT	NS=2;DP=364;DPB=412.0;AC=4;AN=4;AF=1.0;RO=0;AO=412;PRO=0.0;PAO=0.0;QR=0;QA=15768;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=175;SAR=237;SRP=0.0;SAP=23.2703;AB=0.0;ABP=0.0;RUN=1;RPP=4.71796;RPPR=0.0;RPL=215.0;RPR=197.0;EPP=3.76926;EPPR=0.0;DPRA=0.0;ODDS=64.2145;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997573;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.365;SOR=1.078	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:96:3677:-330.983,-26.013,0.0:93:100:93:0,91:4265,289,0:1:.:1:.:.:.:0.000295696	1/1:129.501:316:0:0:316:12091:-1087.48,-85.5472,0.0:316:100:316:0,316:13456,930,0:.:1:1:.:.:.:-0.107524
chr17	9001373	.	G	A	9722.83	REJECT	NS=2;DP=378;DPB=432.0;AC=2;AN=4;AF=0.5;RO=115;AO=317;PRO=0.0;PAO=0.0;QR=4447;QA=12283;PQR=0.0;PQA=0.0;SRF=56;SRR=59;SAF=201;SAR=116;SRP=3.18024;SAP=52.5021;AB=0.733796;ABP=208.114;RUN=1;RPP=10.47;RPPR=21.1563;RPL=142.0;RPR=175.0;EPP=37.5415;EPPR=12.9991;DPRA=0.0;ODDS=311.596;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.586;Dels=0.0;FS=11.952;HaplotypeScore=13.7163;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4585;QD=24.515;ReadPosRankSum=0.6465;SOR=1.319;ClippingRankSum=-1.301	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.994:105:50:1922:56:2200:-169.279,0.0,-144.258:56:53:105:49,56:1881,0,1782:1:.:1:.:.:.:0.000295696	0/1:119.994:325:65:2525:261:10083:-818.563,0.0,-138.833:260:80:325:65,260:10226,0,1857:.:1:1:.:.:.:-0.107524
chr17	9001410	.	A	G	15800.9	REJECT	NS=2;DP=411;DPB=470.0;AC=4;AN=4;AF=1.0;RO=1;AO=469;PRO=0.0;PAO=0.0;QR=34;QA=18180;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=230;SAR=239;SRP=5.18177;SAP=3.38533;AB=0.0;ABP=0.0;RUN=1;RPP=5.90405;RPPR=5.18177;RPL=247.0;RPR=222.0;EPP=13.238;EPPR=5.18177;DPRA=0.0;ODDS=71.6978;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995736;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.276;Dels=0.0;FS=0.0;HaplotypeScore=7.8147;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.611;QD=30.565;ReadPosRankSum=0.972;SOR=0.4845;ClippingRankSum=0.213	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:1:34:115:4423:-394.98,-28.3598,0.0:114:99:115:1,113:4661,303,0:1:.:1:.:.:.:0.000295696	1/1:129.501:353:0:0:354:13757:-1237.27,-95.879,0.0:353:100:353:0,352:15355,1054,0:.:1:1:.:.:.:-0.107524
chr17	10503956	.	A	T	10008.085	REJECT	NS=2;DP=267;DPB=307.0;AC=4;AN=4;AF=1.0;RO=1;AO=306;PRO=0.0;PAO=0.0;QR=36;QA=11675;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=201;SAR=105;SRP=5.18177;SAP=68.4099;AB=0.0;ABP=0.0;RUN=1;RPP=92.0265;RPPR=5.18177;RPL=97.0;RPR=209.0;EPP=15.5282;EPPR=5.18177;DPRA=0.0;ODDS=48.2009;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993464;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.687;Dels=0.0;FS=0.0;HaplotypeScore=3.9327;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.182;QD=32.045;ReadPosRankSum=0.41;SOR=1.0685;ClippingRankSum=-0.912	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.3775:77:1:36:78:2941:-261.549,-18.1552,0.0:76:99:77:1,75:3161,218,0:1:.:1:.:.:.:0.000295696	1/1:122.3775:228:0:0:228:8734:-785.674,-61.7519,0.0:228:100:228:0,228:9773,677,0:.:1:1:.:.:.:-0.107524
chr17	16062134	.	G	C	1699.21	REJECT	NS=2;DP=337;DPB=392.0;AC=2;AN=4;AF=0.5;RO=309;AO=83;PRO=0.0;PAO=0.0;QR=11567;QA=3130;PQR=0.0;PQA=0.0;SRF=133;SRR=176;SAF=34;SAR=49;SRP=16.004;SAP=8.89682;AB=0.211735;ABP=285.944;RUN=1;RPP=6.17594;RPPR=3.01733;RPL=47.0;RPR=36.0;EPP=3.66436;EPPR=19.8831;DPRA=0.0;ODDS=44.5618;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.066;Dels=0.0;FS=5.2105;HaplotypeScore=3.882;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.28;QD=8.635;ReadPosRankSum=0.7295;SOR=0.9555;ClippingRankSum=0.332	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.466:107:54:2005:55:2061:-156.369,0.0,-150.943:54:50:107:52,54:1748,0,1804:1:.:1:.:.:.:0.000295696	0/1:118.466:282:255:9562:28:1069:-19.993,0.0,-783.472:28:10:282:254,28:367,0,9741:.:1:1:.:.:.:-0.107524
chr17	16068252	.	C	A	71.77	PASS	DP=38;AC=1;AN=4;AF=0.5;BaseQRankSum=-0.907;FS=5.058;MLEAC=1;MLEAF=0.5;MQ=57.25;MQRankSum=-3.584;QD=1.89;ReadPosRankSum=-0.777;SOR=1.911;ClippingRankSum=-0.993	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33,5:38:99.0:100,0,1332:5:13:38:1:.:.:.:.:.:0.000295696	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.107524
chr17	16068278	.	A	G	179.1665	REJECT	NS=2;DP=252;DPB=274.0;AC=2;AN=4;AF=0.5;RO=222;AO=52;PRO=0.0;PAO=0.0;QR=8473;QA=1961;PQR=0.0;PQA=0.0;SRF=150;SRR=72;SAF=52;SAR=0;SRP=62.5204;SAP=115.927;AB=0.189781;ABP=232.045;RUN=1;RPP=35.7494;RPPR=6.92286;RPL=12.0;RPR=40.0;EPP=35.7494;EPPR=3.1668;DPRA=0.0;ODDS=2.19874;GTI=1;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=25.4808;MQMR=59.6982;PAIRED=1.0;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=12;BaseQRankSum=0.6525;Dels=0.0;FS=25.333;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=54.765;MQRankSum=-7.3425;QD=3.715;ReadPosRankSum=-1.6955;SOR=4.6935;ClippingRankSum=1.371	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:104.278:54:42:1613:14:540:-19.4281,0.0,-130.252:12:23:54:42,11:365,0,1752:1:.:1:.:.:.:0.000295696	0/1:49.728458:224:180:6860:38:1421:-17.16,0.0,-559.63:44:19:224:180,50:277,0,7018:.:1:1:.:.:.:-0.107524
chr17	16068287	.	A	T	348.3275	REJECT	NS=2;DP=259;DPB=282.0;AC=2;AN=4;AF=0.5;RO=220;AO=62;PRO=0.0;PAO=0.0;QR=8376;QA=2355;PQR=0.0;PQA=0.0;SRF=145;SRR=75;SAF=61;SAR=1;SRP=51.3749;SAP=129.096;AB=0.219858;ABP=195.24;RUN=1;RPP=43.4978;RPPR=3.642;RPL=14.0;RPR=48.0;EPP=38.8746;EPPR=4.94488;DPRA=0.0;ODDS=37.7935;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=25.7903;MQMR=59.0545;PAIRED=1.0;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=12;BaseQRankSum=-0.594;Dels=0.0;FS=36.5845;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=53.445;MQRankSum=-7.9375;QD=4.535;ReadPosRankSum=-1.6325;SOR=4.5465;ClippingRankSum=-0.312	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.36:57:42:1643:17:644:-24.9494,0.0,-132.068:15:27:57:42,14:416,0,1720:1:.:1:.:.:.:0.000295696	0/1:115.569:229:178:6733:45:1711:-35.007,0.0,-546.671:51:22:229:179,57:535,0,6883:.:1:1:.:.:.:-0.107524
chr17	16068340	.	C	T	1094.77	PASS	DP=155;AC=2;AN=4;AF=0.5;MQ0=5;BaseQRankSum=3.2145;Dels=0.0;FS=58.959;HaplotypeScore=4.9151;MLEAC=1;MLEAF=0.5;MQ=49.85;MQRankSum=-9.4605;QD=9.575;ReadPosRankSum=2.262;SOR=5.2485;ClippingRankSum=3.365	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:41,26:67:99.0:968,0,1618:26:39:67:1:.:.:.:.:.:0.000295696	0/1:171,73:244:99.0:1278,0,6699:73:30:244:.:1:.:.:.:.:-0.107524
chr17	16068340	.	CTCG	TTCA	1591.94	REJECT	NS=2;DP=300;DPB=309.75;AC=2;AN=4;AF=0.5;RO=203;AO=96;PRO=14.0;PAO=8.0;QR=7726;QA=3666;PQR=351.0;PQA=280.0;SRF=123;SRR=80;SAF=92;SAR=4;SRP=22.7889;SAP=178.176;AB=0.32;ABP=87.4371;RUN=1;RPP=4.45795;RPPR=3.27772;RPL=52.0;RPR=44.0;EPP=6.26751;EPPR=4.81808;DPRA=0.0;ODDS=144.994;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.5;LEN=4;MQM=27.8542;MQMR=56.1823;PAIRED=0.989583;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:139.283:67:38:1428:29:1081:-70.9984,0.0,-118.792:29:43:67:.:.:1:.:.:.:0.000295696	0/1:139.283:233:165:6298:67:2585:-115.522,0.0,-522.939:67:29:232:.:.:1:.:.:.:-0.107524
chr17	16068343	.	G	A	1174.77	PASS	DP=158;AC=2;AN=4;AF=0.5;MQ0=6;BaseQRankSum=1.7815;Dels=0.0;FS=52.103;HaplotypeScore=5.9237;MLEAC=1;MLEAF=0.5;MQ=49.51;MQRankSum=-9.631;QD=10.03;ReadPosRankSum=1.5635;SOR=4.785;ClippingRankSum=-0.748	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40,27:67:99.0:1002,0,1618:27:40:67:1:.:.:.:.:.:0.000295696	0/1:170,79:249:99.0:1404,0,6578:79:32:249:.:1:.:.:.:.:-0.107524
chr17	16068362	.	C	T	1479.14	REJECT	NS=2;DP=289;DPB=320.0;AC=2;AN=4;AF=0.5;RO=208;AO=111;PRO=0.0;PAO=0.0;QR=8024;QA=4108;PQR=0.0;PQA=0.0;SRF=124;SRR=84;SAF=99;SAR=12;SRP=19.7139;SAP=151.081;AB=0.346875;ABP=68.1816;RUN=1;RPP=5.3774;RPPR=4.51363;RPL=50.0;RPR=61.0;EPP=4.59489;EPPR=11.1951;DPRA=0.0;ODDS=112.731;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=27.8468;MQMR=54.5529;PAIRED=0.990991;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=10;BaseQRankSum=-1.859;Dels=0.0;FS=45.4815;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=47.87;MQRankSum=-9.6765;QD=8.815;ReadPosRankSum=0.086;SOR=4.5225;ClippingRankSum=-0.993	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:37:1417:34:1187:-57.3027,0.0,-108.936:30:45:67:36,27:773,0,1362:1:.:1:.:.:.:0.000295696	0/1:129.501:253:171:6607:77:2921:-113.367,0.0,-527.507:82:32:253:171,87:1573,0,6704:.:1:1:.:.:.:-0.107524
chr17	16068377	.	C	G	1778.09	REJECT	NS=2;DP=309;DPB=347.0;AC=2;AN=4;AF=0.5;RO=218;AO=129;PRO=0.0;PAO=0.0;QR=8290;QA=4967;PQR=0.0;PQA=0.0;SRF=121;SRR=97;SAF=100;SAR=29;SRP=8.74777;SAP=87.8661;AB=0.371758;ABP=52.5787;RUN=1;RPP=10.4337;RPPR=13.2102;RPL=54.0;RPR=75.0;EPP=13.531;EPPR=4.96263;DPRA=0.0;ODDS=131.604;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=26.7054;MQMR=54.0183;PAIRED=0.984496;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=9;BaseQRankSum=1.477;Dels=0.0;FS=25.0175;HaplotypeScore=9.6021;MLEAC=1;MLEAF=0.5;MQ=47.665;MQRankSum=-10.174;QD=9.63;ReadPosRankSum=-0.8635;SOR=2.6025;ClippingRankSum=-0.853	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:48:1760:37:1410:-62.1826,0.0,-135.914:32:40:79:47,27:965,0,1923:1:.:1:.:.:.:0.000295696	0/1:129.501:266:170:6530:92:3557:-132.079,0.0,-516.192:96:36:266:170,101:1816,0,6560:.:1:1:.:.:.:-0.107524
chr17	16068383	.	G	A	2201.54	REJECT	NS=2;DP=326;DPB=368.0;AC=2;AN=4;AF=0.5;RO=218;AO=150;PRO=0.0;PAO=0.0;QR=8370;QA=5716;PQR=0.0;PQA=0.0;SRF=116;SRR=102;SAF=105;SAR=45;SRP=4.96263;SAP=55.1256;AB=0.407609;ABP=30.2953;RUN=1;RPP=26.1727;RPPR=13.2102;RPL=55.0;RPR=95.0;EPP=19.7451;EPPR=6.99465;DPRA=0.0;ODDS=157.107;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=27.54;MQMR=54.7936;PAIRED=0.966667;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=10;BaseQRankSum=1.0405;Dels=0.0;FS=17.116;HaplotypeScore=7.6048;MLEAC=1;MLEAF=0.5;MQ=48.06;MQRankSum=-10.169;QD=10.725;ReadPosRankSum=-2.145;SOR=1.9855;ClippingRankSum=0.217	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:50:1931:41:1532:-72.099,0.0,-149.598:35:41:85:49,30:1118,0,1955:1:.:1:.:.:.:0.000295696	0/1:129.501:280:168:6439:109:4184:-165.721,0.0,-507.001:112:40:280:168,116:2205,0,6459:.:1:1:.:.:.:-0.107524
chr17	16068396	.	G	A	2791.605	REJECT	NS=2;DP=375;DPB=429.0;AC=2;AN=4;AF=0.5;RO=248;AO=181;PRO=0.0;PAO=0.0;QR=9605;QA=6904;PQR=0.0;PQA=0.0;SRF=123;SRR=125;SAF=102;SAR=79;SRP=3.04532;SAP=9.35676;AB=0.421911;ABP=25.7323;RUN=1;RPP=74.141;RPPR=18.4558;RPL=52.0;RPR=129.0;EPP=47.6515;EPPR=11.9764;DPRA=0.0;ODDS=194.032;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=29.5801;MQMR=55.7258;PAIRED=0.944751;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=12;BaseQRankSum=0.344;Dels=0.0;FS=5.851;HaplotypeScore=5.8237;MLEAC=1;MLEAF=0.5;MQ=48.935;MQRankSum=-9.455;QD=8.615;ReadPosRankSum=-1.3185;SOR=0.9995;ClippingRankSum=0.421	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6595:106:65:2499:49:1848:-87.2104,0.0,-192.164:42:39:106:64,35:910,0,2355:1:.:1:.:.:.:0.000295696	0/1:117.6595:318:183:7106:132:5056:-216.778,0.0,-556.781:135:42:318:183,138:2756,0,7081:.:1:1:.:.:.:-0.107524
chr17	16068463	.	C	T	183.136	REJECT	NS=2;DP=435;DPB=435.0;AC=1;AN=4;AF=0.25;RO=400;AO=35;PRO=0.0;PAO=0.0;QR=15283;QA=1341;PQR=0.0;PQA=0.0;SRF=124;SRR=276;SAF=5;SAR=30;SRP=128.435;SAP=41.7866;AB=0.156522;ABP=120.855;RUN=1;RPP=6.05036;RPPR=128.435;RPL=21.0;RPR=14.0;EPP=3.56868;EPPR=3.79203;DPRA=0.0;ODDS=42.1685;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=40.9429;MQMR=46.9875;PAIRED=0.942857;PAIREDR=0.9625;technology.ILLUMINA=1.0;BaseQRankSum=1.238;FS=2.62;MLEAC=1;MLEAF=0.5;MQ=49.26;MQRankSum=-0.704;QD=2.28;ReadPosRankSum=1.688;SOR=1.224;ClippingRankSum=-0.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:97:3642:18:698:-24.3887,0.0,-247.839:17:16:108:86,16:275,0,3002:1:.:1:.:.:.:0.000295696	0/0:160.002:320:303:11641:17:643:0.0,-35.367,-874.573:17:5:320:.:.:.:.:0:.:.:.:-0.107524
chr17	16097825	.	T	G	263.77	PASS	SOMATIC;DP=324;AC=1;AN=4;AF=0.5;MQ0=5;BaseQRankSum=-0.308;Dels=0.0;FS=56.793;HaplotypeScore=11.6376;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-6.358;QD=0.81;ReadPosRankSum=-5.074;SOR=4.697	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:0.000295696	0/1:288,36:324:99.0:292,0,11082:36:11:324:.:1:.:.:.:.:-0.107524
chr17	16097870	.	C	A	855.482	REJECT	NS=2;DP=402;DPB=448.0;AC=2;AN=4;AF=0.5;RO=363;AO=85;PRO=0.0;PAO=0.0;QR=13791;QA=3279;PQR=0.0;PQA=0.0;SRF=127;SRR=236;SAF=68;SAR=17;SRP=74.0827;SAP=69.4574;AB=0.189732;ABP=377.609;RUN=1;RPP=3.64897;RPPR=46.2304;RPL=40.0;RPR=45.0;EPP=7.3277;EPPR=19.8138;DPRA=0.0;ODDS=35.7661;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=36.2588;MQMR=57.4077;PAIRED=0.988235;PAIREDR=0.997245;technology.ILLUMINA=1.0;MQ0=7;BaseQRankSum=0.3265;Dels=0.0;FS=58.754;HaplotypeScore=15.3891;MLEAC=1;MLEAF=0.5;MQ=55.47;MQRankSum=-6.394;QD=2.23;ReadPosRankSum=4.112;SOR=2.3575;ClippingRankSum=0.234	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.893:93:82:3137:16:598:-16.6861,0.0,-256.19:14:14:93:77,12:132,0,2979:1:.:1:.:.:.:0.000295696	0/1:129.501:353:281:10654:69:2681:-81.8661,0.0,-857.682:70:20:353:285,72:1211,0,10785:.:1:1:.:.:.:-0.107524
chr17	17017170	.	G	T	1578.43	REJECT	NS=1;DP=135;DPB=135.0;AC=1;AN=4;AF=0.5;RO=70;AO=65;PRO=0.0;PAO=0.0;QR=2453;QA=2414;PQR=0.0;PQA=0.0;SRF=17;SRR=53;SAF=18;SAR=47;SRP=43.2136;SAP=31.1058;AB=0.481481;ABP=3.41242;RUN=1;RPP=96.8513;RPPR=38.8706;RPL=59.0;RPR=6.0;EPP=39.3908;EPPR=43.2136;DPRA=0.0;ODDS=363.447;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.6154;MQMR=59.4286;PAIRED=0.984615;PAIREDR=0.985714;technology.ILLUMINA=1.0;BaseQRankSum=0.065;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.08;QD=17.39;ReadPosRankSum=-2.809;SOR=0.652;ClippingRankSum=1.618	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:124:70:2453:65:2414:-180.118,0.0,-184.33:61:49:124:56,58:2045,0,2058:1:.:1:.:.:.:0.000295696	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.107524
chr17	17017198	.	TC	T	615.873	REJECT	NS=1;DP=66;DPB=70.3333;AC=1;AN=3;AF=0.0;RO=33;AO=4;PRO=5.33333;PAO=2.33333;QR=1117;QA=160;PQR=173.0;PQA=70.0;SRF=14;SRR=19;SAF=4;SAR=0;SRP=4.65535;SAP=11.6962;AB=0.0606061;ABP=113.69;RUN=1;RPP=3.0103;RPPR=58.3499;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=4.65535;DPRA=0.0;ODDS=116.733;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=57.1515;PAIRED=1.0;PAIREDR=0.969697;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:139.152:66:33:1117:4:160:-68.8852,-53.9382,-152.631:4:6:65:.:.:1:.:.:.:0.000295696	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.107524
chr17	17017199	.	C	T	615.873	REJECT	NS=1;DP=66;DPB=70.3333;AC=1;AN=4;AF=0.5;RO=33;AO=28;PRO=5.33333;PAO=2.33333;QR=1117;QA=840;PQR=173.0;PQA=70.0;SRF=14;SRR=19;SAF=6;SAR=22;SRP=4.65535;SAP=22.8638;AB=0.424242;ABP=6.30041;RUN=1;RPP=10.7656;RPPR=58.3499;RPL=19.0;RPR=9.0;EPP=3.32051;EPPR=4.65535;DPRA=0.0;ODDS=116.733;GTI=0;TYPE=snp;CIGAR=1M1X1M;NUMALT=2;MEANALT=3.0;LEN=1;MQM=53.9286;MQMR=57.1515;PAIRED=1.0;PAIREDR=0.969697;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:139.152:66:33:1117:28:840:-68.8852,0.0,-92.5236:28:43:65:.:.:1:.:.:.:0.000295696	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.107524
chr17	17017873	.	C	G	814.641	REJECT	NS=2;DP=246;DPB=281.0;AC=2;AN=4;AF=0.5;RO=233;AO=48;PRO=0.0;PAO=0.0;QR=8844;QA=1838;PQR=0.0;PQA=0.0;SRF=140;SRR=93;SAF=30;SAR=18;SRP=23.5973;SAP=9.52472;AB=0.170819;ABP=267.489;RUN=1;RPP=21.1059;RPPR=134.985;RPL=14.0;RPR=34.0;EPP=5.9056;EPPR=8.83507;DPRA=0.0;ODDS=17.1517;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982833;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0965;Dels=0.0;FS=4.96;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2155;QD=7.965;ReadPosRankSum=1.373;SOR=0.9255;ClippingRankSum=1.253	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.403:66:37:1392:29:1097:-80.9075,0.0,-107.484:29:44:66:37,29:1024,0,1279:1:.:1:.:.:.:0.000295696	0/1:86.74455:213:196:7452:19:741:-8.43507,0.0,-612.159:19:9:213:193,19:206,0,7551:.:1:1:.:.:.:-0.107524
chr17	17017961	.	G	A	2903.95	PASS	SOMATIC;NS=2;DP=423;DPB=423.0;AC=1;AN=3;AF=0.25;RO=309;AO=114;PRO=0.0;PAO=0.0;QR=11689;QA=4273;PQR=0.0;PQA=0.0;SRF=137;SRR=172;SAF=54;SAR=60;SRP=11.6189;SAP=3.69603;AB=0.352941;ABP=63.6838;RUN=1;RPP=13.982;RPPR=5.04122;RPL=69.0;RPR=45.0;EPP=4.22937;EPPR=5.5472;DPRA=3.23;ODDS=63.3891;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993528;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.238;Dels=0.0;FS=0.433;HaplotypeScore=6.7953;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.776;QD=11.67;ReadPosRankSum=0.26;SOR=0.551	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:97:100:3832:0:0:0.0,-27.1036,-344.937:0:0:97:95,0:.:0.0:0:.:.:.:0:.:.:0:0.000295696	0/1:129.501:323:209:7857:114:4273:-296.937,0.0,-619.254:114:35:323:200,112:37.0:0.364:2:3798,0,7757:.:1:1:.:.:1:-0.107524
chr17	17018177	.	G	A	2239.25	REJECT	NS=2;DP=412;DPB=472.0;AC=2;AN=4;AF=0.5;RO=364;AO=108;PRO=0.0;PAO=0.0;QR=14056;QA=4243;PQR=0.0;PQA=0.0;SRF=131;SRR=233;SAF=39;SAR=69;SRP=65.0762;SAP=21.1059;AB=0.228814;ABP=304.514;RUN=1;RPP=4.2971;RPPR=8.37933;RPL=50.0;RPR=58.0;EPP=3.09072;EPPR=21.7184;DPRA=0.0;ODDS=168.756;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997253;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.354;Dels=0.0;FS=1.4065;HaplotypeScore=4.8797;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.852;QD=10.165;ReadPosRankSum=0.769;SOR=0.599;ClippingRankSum=0.922	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.795:117:59:2299:60:2358:-179.944,0.0,-174.644:58:49:117:59,57:2044,0,2158:1:.:1:.:.:.:0.000295696	0/1:122.795:352:305:11757:48:1885:-73.9293,0.0,-961.809:48:14:352:304,48:1066,0,12043:.:1:1:.:.:.:-0.107524
chr17	17122327	.	G	A	1536.275	REJECT	NS=2;DP=217;DPB=255.0;AC=2;AN=4;AF=0.5;RO=184;AO=71;PRO=0.0;PAO=0.0;QR=7134;QA=2735;PQR=0.0;PQA=0.0;SRF=157;SRR=27;SAF=67;SAR=4;SRP=202.455;SAP=124.399;AB=0.278431;ABP=111.746;RUN=1;RPP=4.50892;RPPR=12.2627;RPL=32.0;RPR=39.0;EPP=3.04088;EPPR=3.43515;DPRA=0.0;ODDS=103.882;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0365;Dels=0.0;FS=3.038;HaplotypeScore=4.9317;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2635;QD=11.97;ReadPosRankSum=0.54;SOR=1.42;ClippingRankSum=1.947	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:33:1282:42:1627:-126.162,0.0,-95.0959:41:55:74:33,41:1529,0,1216:1:.:1:.:.:.:0.000295696	0/1:129.501:180:151:5852:29:1108:-50.9039,0.0,-477.724:29:16:180:151,29:687,0,6034:.:1:1:.:.:.:-0.107524
chr17	17127471	.	G	A	1396.365	REJECT	NS=2;DP=301;DPB=345.0;AC=2;AN=4;AF=0.5;RO=270;AO=75;PRO=0.0;PAO=0.0;QR=10374;QA=2831;PQR=0.0;PQA=0.0;SRF=86;SRR=184;SAF=19;SAR=56;SRP=80.2504;SAP=42.6469;AB=0.217391;ABP=242.344;RUN=1;RPP=18.3264;RPPR=44.7026;RPL=49.0;RPR=26.0;EPP=3.03925;EPPR=4.16842;DPRA=0.0;ODDS=115.839;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973333;PAIREDR=0.996296;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.311;Dels=0.0;FS=4.25;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.634;QD=8.96;ReadPosRankSum=-0.9295;SOR=1.051;ClippingRankSum=-0.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:47:1781:38:1469:-109.228,0.0,-137.294:38:45:84:46,38:1318,0,1684:1:.:1:.:.:.:0.000295696	0/1:129.501:259:223:8593:37:1362:-52.1013,0.0,-702.548:36:14:259:222,36:691,0,8815:.:1:1:.:.:.:-0.107524
chr17	17238410	.	G	T	67.0144	REJECT	NS=2;DP=275;DPB=313.125;AC=2;AN=2;AF=0.0;RO=204;AO=15;PRO=29.4167;PAO=7.08333;QR=7524;QA=230;PQR=1051.5;PQA=251.167;SRF=42;SRR=162;SAF=0;SAR=15;SRP=156.291;SAP=35.5824;AB=0.0322581;ABP=120.83;RUN=1;RPP=14.7363;RPPR=55.1682;RPL=3.0;RPR=12.0;EPP=14.7363;EPPR=3.05288;DPRA=0.0;ODDS=6.24554;GTI=0;TYPE=snp;CIGAR=1X15M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995098;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:35.792:62:39:1445:2:16:-11.1224,-29.7529,-249.42:2:4:57:.:.:1:.:.:.:0.000295696	./1:27.1336:213:165:6079:13:214:0.0,-66.572,-969.954:13:6:205:.:.:1:.:.:.:-0.107524
chr17	17238410	.	G	GT	67.0144	REJECT	NS=2;DP=275;DPB=313.125;AC=2;AN=3;AF=0.25;RO=204;AO=25;PRO=29.4167;PAO=28.4167;QR=7524;QA=752;PQR=1051.5;PQA=1013.5;SRF=42;SRR=162;SAF=11;SAR=14;SRP=156.291;SAP=3.79203;AB=0.145161;ABP=70.8163;RUN=1;RPP=17.6895;RPPR=55.1682;RPL=19.0;RPR=6.0;EPP=10.0459;EPPR=3.05288;DPRA=0.0;ODDS=6.24554;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995098;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.158;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.133;QD=0.7;ReadPosRankSum=-1.743;SOR=0.631;ClippingRankSum=-0.352	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:60.396:59:39:1445:9:268:-11.1224,0.0,-117.178:9:17:56:46,10:85,0,1050:1:.:1:.:.:.:0.000295696	./1:27.1336:213:165:6079:16:484:0.0,-0.1874,-506.887:16:8:205:.:.:.:.:1:.:.:.:-0.107524
chr17	17238410	.	GT	G	67.0144	REJECT	NS=2;DP=275;DPB=313.125;AC=2;AN=2;AF=0.0;RO=204;AO=18;PRO=29.4167;PAO=25.0833;QR=7524;QA=591;PQR=1051.5;PQA=890.833;SRF=42;SRR=162;SAF=6;SAR=12;SRP=156.291;SAP=7.35324;AB=0.112903;ABP=83.705;RUN=1;RPP=15.074;RPPR=55.1682;RPL=14.0;RPR=4.0;EPP=3.49285;EPPR=3.05288;DPRA=0.0;ODDS=6.24554;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995098;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:35.792:62:39:1445:7:223:-11.1224,-3.51519,-121.223:7:12:57:.:.:1:.:.:.:0.000295696	./1:27.1336:213:165:6079:11:368:0.0,-17.2856,-546.71:11:5:205:.:.:1:.:.:.:-0.107524
chr17	29508775	.	G	A	2412.72	PASS	SOMATIC;NS=2;DP=395;DPB=395.0;AC=1;AN=3;AF=0.25;RO=287;AO=101;PRO=0.0;PAO=0.0;QR=10166;QA=3621;PQR=0.0;PQA=0.0;SRF=126;SRR=161;SAF=42;SAR=59;SRP=12.2788;SAP=9.22372;AB=0.348276;ABP=60.9961;RUN=1;RPP=18.6836;RPPR=31.1638;RPL=64.0;RPR=37.0;EPP=4.06379;EPPR=3.07839;DPRA=2.7619;ODDS=64.9677;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.099;MQMR=59.9303;PAIRED=0.990099;PAIREDR=0.996516;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.213;Dels=0.0;FS=0.0;HaplotypeScore=34.9411;MLEAC=1;MLEAF=0.5;MQ=60.01;MQRankSum=0.348;QD=10.75;ReadPosRankSum=0.165;SOR=0.679	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:101:103:3627:0:0:0.0,-27.7891,-326.365:0:0:99:96,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:290:184:6539:101:3621:-248.744,0.0,-511.105:101:35:285:177,96:36.0:0.351:2:3146,0,6181:.:1:1:.:.:1:-0.0533013
chr17	29508819	.	A	AT	671.459	REJECT	NS=2;DP=151;DPB=202.552;AC=2;AN=2;AF=0.0;RO=60;AO=27;PRO=42.1667;PAO=29.1667;QR=2222;QA=611;PQR=1525.0;PQA=1004.0;SRF=6;SRR=54;SAF=1;SAR=26;SRP=86.3948;SAP=53.2759;AB=0.178808;ABP=138.317;RUN=1;RPP=3.73412;RPPR=3.58936;RPL=15.0;RPR=12.0;EPP=3.09072;EPPR=8.22183;DPRA=0.0;ODDS=33.6645;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=3;MEANALT=14.0;LEN=1;MQM=59.7407;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:135.929:44:23:852:3:61:-23.9182,-25.3924,-122.403:3:8:37:.:.:1:.:.:.:-0.00997748	./1:128.489:107:37:1370:24:550:-52.0173,-10.6731,-146.076:24:27:89:.:.:1:.:.:.:-0.0533013
chr17	29508819	.	AT	A	671.459	REJECT	NS=2;DP=151;DPB=202.552;AC=2;AN=4;AF=0.5;RO=60;AO=32;PRO=42.1667;PAO=24.6667;QR=2222;QA=1058;PQR=1525.0;PQA=802.5;SRF=6;SRR=54;SAF=5;SAR=27;SRP=86.3948;SAP=35.8538;AB=0.211921;ABP=111.857;RUN=1;RPP=7.35324;RPPR=3.58936;RPL=20.0;RPR=12.0;EPP=3.28173;EPPR=8.22183;DPRA=0.0;ODDS=33.6645;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=3;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.936;FS=1.56;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.726;QD=1.69;ReadPosRankSum=0.593;SOR=1.204;ClippingRankSum=-0.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4645:48:23:852:10:349:-23.9182,0.0,-100.95:12:27:45:38,15:159,0,733:1:.:1:.:.:.:-0.00997748	0/1:128.489:107:37:1370:22:709:-52.0173,0.0,-217.681:22:25:89:.:.:.:.:1:.:.:.:-0.0533013
chr17	29508819	.	ATT	A	671.459	REJECT	NS=2;DP=151;DPB=202.552;AC=2;AN=2;AF=0.0;RO=60;AO=7;PRO=42.1667;PAO=17.0;QR=2222;QA=166;PQR=1525.0;PQA=606.5;SRF=6;SRR=54;SAF=0;SAR=7;SRP=86.3948;SAP=18.2106;AB=0.0463576;ABP=272.92;RUN=1;RPP=5.80219;RPPR=3.58936;RPL=2.0;RPR=5.0;EPP=5.80219;EPPR=8.22183;DPRA=0.0;ODDS=33.6645;GTI=0;TYPE=del;CIGAR=1M2D26M;NUMALT=3;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:135.929:44:23:852:1:14:-23.9182,-32.9648,-146.089:1:3:37:.:.:1:.:.:.:-0.00997748	./1:128.489:107:37:1370:6:152:-52.0173,-55.6968,-288.477:6:7:89:.:.:1:.:.:.:-0.0533013
chr17	29545987	.	A	AT	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:60,0:60:0.7,0.0:60.0,0.0:37.445,0.0:0.00676819,0.0:0,0:0,0:39,21,0,0:0:0:60:.:.:.:.:0:.:-0.00997748	0/1:97,55:152:0.185567,0.0909091:60.0,60.0:38.0663,39.044:0.00320856,0.0:78,11:21,11:64,33,42,13:55:36:152:.:.:.:.:1:.:-0.0533013
chr17	29546175	.	T	C	1214.57	PASS	SOMATIC;NS=2;DP=188;DPB=188.0;AC=1;AN=3;AF=0.25;RO=139;AO=49;PRO=0.0;PAO=0.0;QR=5320;QA=1897;PQR=0.0;PQA=0.0;SRF=33;SRR=106;SAF=8;SAR=41;SRP=86.2605;SAP=51.2702;AB=0.35;ABP=30.3709;RUN=1;RPP=15.8176;RPPR=86.2605;RPL=33.0;RPR=16.0;EPP=4.11819;EPPR=14.3988;DPRA=2.91667;ODDS=30.9864;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.4898;MQMR=60.0;PAIRED=0.979592;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.507;Dels=0.0;FS=6.788;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.288;QD=12.03;ReadPosRankSum=1.411;SOR=1.372	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:133.319:47:48:1850:0:0:0.0,-13.0312,-166.731:0:0:47:46,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.162:140:91:3470:49:1897:-132.708,0.0,-274.322:49:35:140:88,47:38.0:0.348:2:1712,0,3466:.:1:1:.:.:1:-0.0533013
chr17	29553485	.	G	A	8573.28	REJECT	NS=2;DP=386;DPB=440.0;AC=3;AN=4;AF=0.75;RO=127;AO=313;PRO=0.0;PAO=0.0;QR=4807;QA=11705;PQR=0.0;PQA=0.0;SRF=79;SRR=48;SAF=197;SAR=116;SRP=19.4417;SAP=48.528;AB=0.61747;ABP=42.8032;RUN=1;RPP=10.5654;RPPR=3.0274;RPL=140.0;RPR=173.0;EPP=13.5624;EPPR=7.95168;DPRA=0.0;ODDS=68.2316;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9393;MQMR=60.0;PAIRED=0.99361;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.361;Dels=0.0;FS=0.976;HaplotypeScore=8.8061;MLEAC=1;MLEAF=0.75;MQ=59.87;MQRankSum=-0.363;QD=28.88;ReadPosRankSum=-1.422;SOR=0.937	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.823:106:0:0:108:3975:-357.697,-29.2066,0.0:106:100:106:0,104:4138,311,0:1:.:1:.:.:.:-0.00997748	0/1:119.823:332:127:4807:205:7730:-605.794,0.0,-342.474:205:62:332:127,205:7663,0,4375:.:1:1:.:.:.:-0.0533013
chr17	29559932	.	C	A	6551.675	REJECT	NS=2;DP=266;DPB=302.0;AC=3;AN=4;AF=0.75;RO=75;AO=227;PRO=0.0;PAO=0.0;QR=2837;QA=8708;PQR=0.0;PQA=0.0;SRF=39;SRR=36;SAF=105;SAR=122;SRP=3.27088;SAP=5.77486;AB=0.675325;ABP=64.6858;RUN=1;RPP=29.8811;RPPR=38.4777;RPL=140.0;RPR=87.0;EPP=12.2032;EPPR=15.7786;DPRA=0.0;ODDS=45.3298;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.05;Dels=0.0;FS=1.221;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.021;QD=25.535;ReadPosRankSum=-1.0;SOR=0.8115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.9065:71:0:0:71:2729:-245.768,-19.2605,0.0:71:100:71:0,71:3052,214,0:1:.:1:.:.:.:-0.00997748	0/1:118.9065:230:75:2837:156:5979:-475.289,0.0,-192.633:156:68:230:74,156:6017,0,2448:.:1:1:.:.:.:-0.0533013
chr17	29653293	.	T	C	1230.29	PASS	SOMATIC;NS=2;DP=227;DPB=227.0;AC=1;AN=3;AF=0.25;RO=174;AO=53;PRO=0.0;PAO=0.0;QR=6705;QA=2029;PQR=0.0;PQA=0.0;SRF=58;SRR=116;SAF=18;SAR=35;SRP=44.9921;SAP=14.851;AB=0.297753;ABP=66.2514;RUN=1;RPP=53.2;RPPR=104.096;RPL=44.0;RPR=9.0;EPP=3.05127;EPPR=7.05373;DPRA=3.63265;ODDS=31.5647;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994253;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.032;Dels=0.0;FS=1.369;HaplotypeScore=3.8574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.038;QD=9.79;ReadPosRankSum=0.216;SOR=0.565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.461:48:49:1859:0:0:0.0,-13.2824,-167.511:0:0:48:47,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:178:125:4846:53:2029:-134.323,0.0,-387.761:53:30:178:123,51:38.0:0.292:2:1771,0,4889:.:1:1:.:.:1:-0.0533013
chr17	29800531	.	C	T	4800.525	REJECT	NS=2;DP=216;DPB=244.0;AC=3;AN=4;AF=0.75;RO=67;AO=176;PRO=0.0;PAO=0.0;QR=2635;QA=6523;PQR=0.0;PQA=0.0;SRF=55;SRR=12;SAF=135;SAR=41;SRP=62.9365;SAP=112.028;AB=0.645503;ABP=37.7653;RUN=1;RPP=33.8551;RPPR=3.30199;RPL=63.0;RPR=113.0;EPP=15.6443;EPPR=17.3031;DPRA=0.0;ODDS=34.6957;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988636;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.856;Dels=0.0;FS=1.695;HaplotypeScore=3.9658;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.423;QD=27.595;ReadPosRankSum=-0.951;SOR=1.5225	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.14:54:0:0:54:1990:-179.307,-14.6422,0.0:53:100:53:0,53:2534,172,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:188:67:2635:122:4533:-356.65,0.0,-185.863:121:64:188:67,121:4483,0,2395:.:1:1:.:.:.:-0.0533013
chr17	29800551	.	T	C	5741.225	REJECT	NS=2;DP=248;DPB=288.0;AC=3;AN=4;AF=0.75;RO=74;AO=214;PRO=0.0;PAO=0.0;QR=2849;QA=8107;PQR=0.0;PQA=0.0;SRF=55;SRR=19;SAF=146;SAR=68;SRP=41.0404;SAP=64.7451;AB=0.645933;ABP=41.6708;RUN=1;RPP=100.463;RPPR=10.5224;RPL=58.0;RPR=156.0;EPP=3.37559;EPPR=8.76177;DPRA=0.0;ODDS=50.2718;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.511;Dels=0.0;FS=2.3285;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.011;QD=26.67;ReadPosRankSum=0.896;SOR=1.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.055:78:0:0:79:2989:-269.123,-21.4068,0.0:78:100:78:0,77:3282,231,0:1:.:1:.:.:.:-0.00997748	0/1:120.055:208:74:2849:135:5118:-403.802,0.0,-199.723:134:64:208:74,134:5002,0,2591:.:1:1:.:.:.:-0.0533013
chr17	29800656	.	C	T	8596.075	REJECT	NS=2;DP=408;DPB=461.0;AC=3;AN=4;AF=0.75;RO=144;AO=317;PRO=0.0;PAO=0.0;QR=5536;QA=11757;PQR=0.0;PQA=0.0;SRF=72;SRR=72;SAF=185;SAR=132;SRP=3.0103;SAP=22.2521;AB=0.594366;ABP=30.4687;RUN=1;RPP=8.004;RPPR=9.04217;RPL=145.0;RPR=172.0;EPP=3.01715;EPPR=3.25157;DPRA=0.0;ODDS=67.0298;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990536;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.542;Dels=0.0;FS=4.8965;HaplotypeScore=13.7978;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.888;QD=24.195;ReadPosRankSum=-0.517;SOR=1.108	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:106:3926:-353.356,-28.6847,0.0:103:100:103:0,100:4105,300,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:355:144:5536:211:7831:-608.23,0.0,-401.855:211:59:355:144,211:7688,0,5175:.:1:1:.:.:.:-0.0533013
chr17	29800755	.	T	C	9245.585	REJECT	NS=2;DP=405;DPB=463.0;AC=3;AN=4;AF=0.75;RO=130;AO=333;PRO=0.0;PAO=0.0;QR=4901;QA=12503;PQR=0.0;PQA=0.0;SRF=46;SRR=84;SAF=125;SAR=208;SRP=27.1303;SAP=47.933;AB=0.627507;ABP=52.2946;RUN=1;RPP=5.36436;RPPR=3.07711;RPL=176.0;RPR=157.0;EPP=15.0675;EPPR=11.0949;DPRA=0.0;ODDS=71.92;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990991;PAIREDR=0.992308;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.822;Dels=0.0;FS=0.0;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.89;QD=25.305;ReadPosRankSum=-0.331;SOR=0.9685	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.284:112:0:0:114:4159:-374.262,-30.8085,0.0:112:100:112:0,111:4353,332,0:1:.:1:.:.:.:-0.00997748	0/1:119.284:348:130:4901:219:8344:-655.996,0.0,-346.324:219:63:348:129,219:8336,0,4423:.:1:1:.:.:.:-0.0533013
chr17	29803805	.	T	C	7988.71	REJECT	NS=2;DP=347;DPB=397.0;AC=3;AN=4;AF=0.75;RO=109;AO=288;PRO=0.0;PAO=0.0;QR=4154;QA=10935;PQR=0.0;PQA=0.0;SRF=56;SRR=53;SAF=160;SAR=128;SRP=3.1896;SAP=10.7311;AB=0.632997;ABP=48.6405;RUN=1;RPP=20.3821;RPPR=3.98647;RPL=120.0;RPR=168.0;EPP=33.8935;EPPR=7.4927;DPRA=0.0;ODDS=63.3175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989583;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.369;Dels=0.0;FS=3.2545;HaplotypeScore=5.9656;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.214;QD=28.395;ReadPosRankSum=-1.1;SOR=0.9045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:100:3761:-338.513,-27.0725,0.0:97:100:97:0,95:3761,285,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:297:109:4154:188:7174:-565.225,0.0,-293.235:188:63:297:109,188:7083,0,3760:.:1:1:.:.:.:-0.0533013
chr17	30293149	.	C	CT	860.88	REJECT	NS=2;DP=232;DPB=327.762;AC=2;AN=4;AF=0.5;RO=93;AO=45;PRO=57.75;PAO=54.75;QR=3289;QA=1691;PQR=2036.25;PQA=1931.25;SRF=68;SRR=25;SAF=41;SAR=4;SRP=46.1829;SAP=69.0713;AB=0.188285;ABP=204.721;RUN=1;RPP=3.05855;RPPR=5.83555;RPL=23.0;RPR=22.0;EPP=4.21667;EPPR=11.4393;DPRA=0.0;ODDS=47.4907;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=59.9111;MQMR=59.871;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=2.366;FS=2.0965;MLEAC=1;MLEAF=0.5;MQ=59.105;MQRankSum=0.113;QD=3.8;RPA=14,15;RU=T;ReadPosRankSum=-0.6025;SOR=0.9515;STR;ClippingRankSum=1.073	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.731:67:31:1086:15:551:-39.7373,0.0,-90.9007:19:31:60:40,23:371,0,702:1:.:1:.:.:.:-0.00997748	0/1:115.731:196:62:2203:30:1140:-79.9168,0.0,-182.053:44:29:147:111,58:689,0,1583:.:1:1:.:.:.:-0.0533013
chr17	30293149	.	CT	C	1070.03	REJECT	NS=2;DP=239;DPB=327.762;AC=2;AN=2;AF=0.0;RO=93;AO=36;PRO=57.75;PAO=38.25;QR=3289;QA=1157;PQR=2036.25;PQA=1310.75;SRF=68;SRR=25;SAF=23;SAR=13;SRP=46.1829;SAP=9.04217;AB=0.150628;ABP=256.4;RUN=1;RPP=5.18177;RPPR=5.83555;RPL=15.0;RPR=21.0;EPP=3.9754;EPPR=11.4393;DPRA=0.0;ODDS=47.4907;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=3;MEANALT=18.5;LEN=1;MQM=57.7778;MQMR=59.871;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:132.462:71:31:1086:11:383:-39.7373,-21.558,-160.335:11:19:57:.:.:1:.:.:.:-0.00997748	./1:132.462:168:62:2203:25:774:-79.9168,-43.9762,-366.72:25:20:126:.:.:1:.:.:.:-0.0533013
chr17	30293149	.	CTT	C	1070.03	REJECT	NS=2;DP=239;DPB=327.762;AC=2;AN=2;AF=0.0;RO=93;AO=9;PRO=57.75;PAO=35.25;QR=3289;QA=301;PQR=2036.25;PQA=1197.75;SRF=68;SRR=25;SAF=7;SAR=2;SRP=46.1829;SAP=9.04217;AB=0.0535714;ABP=293.832;RUN=1;RPP=9.04217;RPPR=5.83555;RPL=2.0;RPR=7.0;EPP=3.25157;EPPR=11.4393;DPRA=0.0;ODDS=47.4907;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=3;MEANALT=26.0;LEN=2;MQM=54.0;MQMR=59.871;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:132.462:71:31:1086:0:0:-39.7373,-53.0015,-194.748:0:0:57:.:.:1:.:.:.:-0.00997748	./1:132.462:168:62:2203:9:301:-79.9168,-90.7169,-472.982:9:7:126:.:.:1:.:.:.:-0.0533013
chr17	30302736	.	A	AT	187.626	REJECT	NS=2;DP=190;DPB=226.647;AC=2;AN=2;AF=0.0;RO=152;AO=13;PRO=31.1667;PAO=19.1667;QR=5733;QA=498;PQR=1111.83;PQA=681.833;SRF=41;SRR=111;SAF=2;SAR=11;SRP=73.0117;SAP=16.5402;AB=0.0684211;ABP=310.399;RUN=1;RPP=3.17734;RPPR=61.5258;RPL=7.0;RPR=6.0;EPP=4.51363;EPPR=4.4389;DPRA=0.0;ODDS=10.1493;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=60.0;MQMR=58.8355;PAIRED=1.0;PAIREDR=0.993421;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:44.0781:50:37:1388:5:186:-11.8026,-4.73409,-130.218:5:10:49:.:.:1:.:.:.:-0.00997748	./1:114.422:140:115:4345:8:312:-14.1099,-19.2017,-404.644:8:6:136:.:.:1:.:.:.:-0.0533013
chr17	30302736	.	AT	A	187.626	REJECT	NS=2;DP=190;DPB=226.647;AC=2;AN=4;AF=0.5;RO=152;AO=20;PRO=31.1667;PAO=19.6667;QR=5733;QA=726;PQR=1111.83;PQA=713.333;SRF=41;SRR=111;SAF=3;SAR=17;SRP=73.0117;SAP=24.2907;AB=0.105263;ABP=260.158;RUN=1;RPP=6.91895;RPPR=61.5258;RPL=13.0;RPR=7.0;EPP=3.0103;EPPR=4.4389;DPRA=0.0;ODDS=10.1493;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=4.5;LEN=1;MQM=57.4;MQMR=58.8355;PAIRED=1.0;PAIREDR=0.993421;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:44.0781:50:37:1388:7:245:-11.8026,0.0,-129.274:7:14:49:.:.:1:.:.:.:-0.00997748	0/1:114.422:140:115:4345:13:481:-14.1099,0.0,-396.498:13:10:136:.:.:1:.:.:.:-0.0533013
chr17	30321567	.	T	G	2925.88	REJECT	NS=2;DP=211;DPB=231.0;AC=2;AN=4;AF=0.5;RO=113;AO=116;PRO=0.0;PAO=0.0;QR=4216;QA=4156;PQR=0.0;PQA=0.0;SRF=93;SRR=20;SAF=91;SAR=25;SRP=105.415;SAP=84.5528;AB=0.502165;ABP=3.0197;RUN=1;RPP=49.8093;RPPR=21.4774;RPL=33.0;RPR=83.0;EPP=7.80251;EPPR=9.94748;DPRA=0.0;ODDS=114.672;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=59.9381;PAIRED=0.982759;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.435;Dels=0.0;FS=5.606;HaplotypeScore=19.4747;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.1705;QD=16.97;ReadPosRankSum=0.2505;SOR=1.064;ClippingRankSum=1.005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:40:18:676:22:825:-63.5481,0.0,-50.0876:22:55:39:17,22:724,0,569:1:.:1:.:.:.:-0.00997748	0/1:129.501:191:95:3540:94:3331:-248.583,0.0,-267.251:94:49:190:97,94:3120,0,3460:.:1:1:.:.:.:-0.0533013
chr17	30321762	.	G	C	3378.4	REJECT	NS=2;DP=230;DPB=255.0;AC=2;AN=4;AF=0.5;RO=132;AO=122;PRO=0.0;PAO=0.0;QR=4969;QA=4651;PQR=0.0;PQA=0.0;SRF=35;SRR=97;SAF=40;SAR=82;SRP=66.2462;SAP=34.4077;AB=0.478431;ABP=4.04068;RUN=1;RPP=31.4886;RPPR=44.1367;RPL=81.0;RPR=41.0;EPP=4.14943;EPPR=5.37918;DPRA=0.0;ODDS=145.272;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991803;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1605;Dels=0.0;FS=2.4265;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1775;QD=16.675;ReadPosRankSum=1.1175;SOR=0.44;ClippingRankSum=0.743	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.508:49:24:884:26:940:-71.1576,0.0,-66.1227:25:52:49:23,25:807,0,824:1:.:1:.:.:.:-0.00997748	0/1:120.508:205:108:4085:96:3711:-278.577,0.0,-312.253:96:47:204:108,96:3540,0,3971:.:1:1:.:.:.:-0.0533013
chr17	33433487	.	C	T	2863.24	REJECT	NS=1;DP=87;DPB=87.0;AC=2;AN=4;AF=1.0;RO=0;AO=87;PRO=0.0;PAO=0.0;QR=0;QA=3344;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=12;SAR=75;SRP=0.0;SAP=102.074;AB=0.0;ABP=0.0;RUN=1;RPP=7.22845;RPPR=0.0;RPL=50.0;RPR=37.0;EPP=5.03202;EPPR=0.0;DPRA=0.0;ODDS=58.8694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.977011;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.89;SOR=3.528	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:87:3344:-301.021,-23.5667,0.0:83:100:83:0,79:3399,237,0:1:.:1:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0533013
chr17	33445549	.	G	A	5453.355	REJECT	NS=2;DP=349;DPB=404.0;AC=2;AN=4;AF=0.5;RO=205;AO=199;PRO=0.0;PAO=0.0;QR=7828;QA=7655;PQR=0.0;PQA=0.0;SRF=111;SRR=94;SAF=114;SAR=85;SRP=6.07155;SAP=12.1872;AB=0.492574;ABP=3.2038;RUN=1;RPP=3.54498;RPPR=4.80044;RPL=96.0;RPR=103.0;EPP=16.3774;EPPR=8.61376;DPRA=0.0;ODDS=330.425;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995122;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8705;Dels=0.0;FS=4.8805;HaplotypeScore=11.6585;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.4625;QD=18.39;ReadPosRankSum=2.3955;SOR=0.7085;ClippingRankSum=-0.158	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:51:1930:57:2192:-168.025,0.0,-144.453:57:53:107:49,57:2059,0,1755:1:.:1:.:.:.:-0.00997748	0/1:129.501:295:154:5898:142:5463:-411.221,0.0,-450.334:142:48:295:153,142:5226,0,5666:.:1:1:.:.:.:-0.0533013
chr17	37745821	.	A	AAAAT	6488.67	REJECT	NS=2;DP=175;DPB=334.25;AC=4;AN=4;AF=1.0;RO=3;AO=184;PRO=47.0;PAO=72.0;QR=116;QA=6647;PQR=1591.0;PQA=2476.0;SRF=2;SRR=1;SAF=144;SAR=40;SRP=3.73412;SAP=130.655;AB=0.0;ABP=0.0;RUN=1;RPP=20.0516;RPPR=3.73412;RPL=73.0;RPR=111.0;EPP=16.6528;EPPR=9.52472;DPRA=0.0;ODDS=41.112;GTI=0;TYPE=ins;CIGAR=1M4I11M;NUMALT=1;MEANALT=3.0;LEN=4;MQM=59.837;MQMR=60.0;PAIRED=0.98913;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=37745821;HOMLEN=10;HOMSEQ=AAATAAATAA;SVLEN=4;SVTYPE=INS;BaseQRankSum=-0.136;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.235;MQRankSum=0.722;QD=30.415;RPA=2,3;RU=AAAT;ReadPosRankSum=-0.293;SOR=2.5335;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.986:63:0:0:56:2040:-193.145,-15.9797,0.0:70:100:70:4,113:3358,230,0:1:.:1:1:.:.:-0.00997748	1/1:118.986:146:3:116:128:4607:-474.198,-30.9236,0.0:138:98:141:15,223:8529,232,0:.:1:1:1:.:.:-0.0533013
chr17	37745828	.	A	ATAAG	.	PASS	SOMATIC;AC=1;AN=4;END=37745828;HOMLEN=7;HOMSEQ=TAAGTAA;SVLEN=4;SVTYPE=INS	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.00997748	0/1:42,27:27:39:69:.:.:.:1:.:.:-0.0533013
chr17	37745979	.	A	G	13150.2	REJECT	NS=2;DP=351;DPB=408.0;AC=4;AN=4;AF=1.0;RO=1;AO=407;PRO=0.0;PAO=0.0;QR=16;QA=15554;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=153;SAR=254;SRP=5.18177;SAP=57.4358;AB=0.0;ABP=0.0;RUN=1;RPP=3.27173;RPPR=5.18177;RPL=207.0;RPR=200.0;EPP=8.13754;EPPR=5.18177;DPRA=0.0;ODDS=73.6;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990172;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.701;Dels=0.0;FS=2.2165;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.014;QD=26.475;ReadPosRankSum=1.108;SOR=1.2685;ClippingRankSum=1.701	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.7155:112:1:16:112:4287:-384.422,-29.1859,0.0:111:99:112:1,110:4544,324,0:1:.:1:.:.:.:-0.00997748	1/1:124.7155:294:0:0:295:11267:-1013.37,-79.8472,0.0:294:100:294:0,294:12444,858,0:.:1:1:.:.:.:-0.0533013
chr17	37749811	.	T	C	6045.945	REJECT	NS=2;DP=389;DPB=445.0;AC=2;AN=4;AF=0.5;RO=224;AO=221;PRO=0.0;PAO=0.0;QR=8563;QA=8413;PQR=0.0;PQA=0.0;SRF=112;SRR=112;SAF=112;SAR=109;SRP=3.0103;SAP=3.09873;AB=0.496629;ABP=3.05422;RUN=1;RPP=3.25594;RPPR=3.16541;RPL=113.0;RPR=108.0;EPP=8.20808;EPPR=21.778;DPRA=0.0;ODDS=341.958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.434;Dels=0.0;FS=3.1155;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.493;QD=18.075;ReadPosRankSum=1.07;SOR=0.48;ClippingRankSum=2.2	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:52:1986:60:2289:-175.663,0.0,-148.394:59:53:111:52,58:2091,0,1829:1:.:1:.:.:.:-0.00997748	0/1:129.501:333:172:6577:161:6124:-460.614,0.0,-501.788:161:48:333:172,161:5824,0,6375:.:1:1:.:.:.:-0.0533013
chr17	37855834	.	C	A	1966.24	REJECT	NS=2;DP=378;DPB=427.0;AC=2;AN=4;AF=0.5;RO=330;AO=97;PRO=0.0;PAO=0.0;QR=12545;QA=3736;PQR=0.0;PQA=0.0;SRF=154;SRR=176;SAF=45;SAR=52;SRP=6.19513;SAP=4.10723;AB=0.227166;ABP=279.092;RUN=1;RPP=8.04722;RPPR=5.14229;RPL=56.0;RPR=41.0;EPP=5.71904;EPPR=61.1531;DPRA=0.0;ODDS=151.622;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8727;PAIRED=0.989691;PAIREDR=0.99697;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.326;Dels=0.0;FS=1.4655;HaplotypeScore=6.8881;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.6345;QD=10.87;ReadPosRankSum=0.7145;SOR=0.6485;ClippingRankSum=-1.611	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:45:1752:52:2000:-153.731,0.0,-131.418:52:54:96:43,52:1820,0,1473:1:.:1:.:.:.:-0.00997748	0/1:129.501:329:285:10793:45:1736:-66.7966,0.0,-881.243:45:14:329:284,45:975,0,11031:.:1:1:.:.:.:-0.0533013
chr17	37868715	.	C	T	4252.88	REJECT	NS=2;DP=236;DPB=269.0;AC=2;AN=4;AF=0.5;RO=121;AO=148;PRO=0.0;PAO=0.0;QR=4549;QA=5696;PQR=0.0;PQA=0.0;SRF=43;SRR=78;SAF=55;SAR=93;SRP=24.9942;SAP=24.1968;AB=0.550186;ABP=8.89507;RUN=1;RPP=24.1968;RPPR=27.5784;RPL=93.0;RPR=55.0;EPP=3.0103;EPPR=6.04318;DPRA=0.0;ODDS=172.376;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986486;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1705;Dels=0.0;FS=1.0775;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.049;QD=19.805;ReadPosRankSum=0.0405;SOR=0.7635;ClippingRankSum=1.062	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.4395:65:29:1046:37:1394:-107.68,0.0,-76.3295:36:56:65:28,36:1255,0,875:1:.:1:.:.:.:-0.00997748	0/1:121.4395:203:92:3503:111:4302:-332.027,0.0,-260.146:111:55:203:92,111:4238,0,3296:.:1:1:.:.:.:-0.0533013
chr17	37884037	.	C	G	6368.82	REJECT	NS=2;DP=373;DPB=429.0;AC=2;AN=4;AF=0.5;RO=199;AO=228;PRO=0.0;PAO=0.0;QR=7548;QA=8620;PQR=0.0;PQA=0.0;SRF=106;SRR=93;SAF=110;SAR=118;SRP=4.85441;SAP=3.61984;AB=0.531469;ABP=6.70028;RUN=1;RPP=3.0484;RPPR=3.54498;RPL=115.0;RPR=113.0;EPP=11.5819;EPPR=21.3532;DPRA=0.0;ODDS=356.366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995614;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.622;Dels=0.0;FS=1.874;HaplotypeScore=8.8623;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7835;QD=18.575;ReadPosRankSum=0.08;SOR=0.7395;ClippingRankSum=0.047	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:54:2072:57:2174:-165.585,0.0,-156.418:56:51:109:52,55:1914,0,1768:1:.:1:.:.:.:-0.00997748	0/1:129.501:318:145:5476:171:6446:-494.256,0.0,-406.998:171:54:316:145,171:6238,0,5143:.:1:1:.:.:.:-0.0533013
chr17	37922259	.	G	A	5160.405000000001	REJECT	NS=2;DP=368;DPB=414.0;AC=2;AN=4;AF=0.5;RO=225;AO=189;PRO=0.0;PAO=0.0;QR=8740;QA=7205;PQR=0.0;PQA=0.0;SRF=103;SRR=122;SAF=93;SAR=96;SRP=6.49431;SAP=3.1137;AB=0.456522;ABP=9.80795;RUN=1;RPP=3.57327;RPPR=3.09716;RPL=91.0;RPR=98.0;EPP=12.6728;EPPR=9.04217;DPRA=0.0;ODDS=289.376;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991111;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0305;Dels=0.0;FS=0.933;HaplotypeScore=7.994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5545;QD=17.415;ReadPosRankSum=-0.0075;SOR=0.607;ClippingRankSum=0.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.378:89:43:1662:48:1820:-139.17,0.0,-124.966:48:54:89:40,48:1719,0,1418:1:.:1:.:.:.:-0.00997748	0/1:118.378:322:182:7078:141:5385:-396.877,0.0,-549.119:141:44:322:181,141:5059,0,6903:.:1:1:.:.:.:-0.0533013
chr17	37976469	.	C	T	5991.735000000001	REJECT	NS=2;DP=387;DPB=444.0;AC=2;AN=4;AF=0.5;RO=227;AO=217;PRO=0.0;PAO=0.0;QR=8711;QA=8194;PQR=0.0;PQA=0.0;SRF=111;SRR=116;SAF=110;SAR=107;SRP=3.24945;SAP=3.10036;AB=0.488739;ABP=3.49937;RUN=1;RPP=9.26454;RPPR=4.62695;RPL=121.0;RPR=96.0;EPP=21.5128;EPPR=9.98388;DPRA=0.0;ODDS=329.524;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995392;PAIREDR=0.986784;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.165;Dels=0.0;FS=5.1905;HaplotypeScore=16.438;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.177;QD=16.315;ReadPosRankSum=0.6185;SOR=0.5775;ClippingRankSum=-0.069	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:61:2351:52:1950:-144.873,0.0,-180.991:51:45:111:60,50:1666,0,2189:1:.:1:.:.:.:-0.00997748	0/1:129.501:330:166:6360:165:6244:-471.985,0.0,-482.42:165:50:330:165,165:5929,0,6047:.:1:1:.:.:.:-0.0533013
chr17	38020419	.	T	C	3910.98	REJECT	NS=2;DP=263;DPB=300.0;AC=2;AN=4;AF=0.5;RO=154;AO=146;PRO=0.0;PAO=0.0;QR=5779;QA=5475;PQR=0.0;PQA=0.0;SRF=40;SRR=114;SAF=29;SAR=117;SRP=80.2245;SAP=118.188;AB=0.486667;ABP=3.47355;RUN=1;RPP=5.92543;RPPR=7.57885;RPL=80.0;RPR=66.0;EPP=22.2858;EPPR=27.8835;DPRA=0.0;ODDS=214.208;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993151;PAIREDR=0.993506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7475;Dels=0.0;FS=3.8765;HaplotypeScore=2.8925;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0825;QD=17.11;ReadPosRankSum=1.2635;SOR=0.9495;ClippingRankSum=-0.615	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:39:1405:35:1298:-96.8644,0.0,-106.488:35:48:72:36,35:1212,0,1204:1:.:1:.:.:.:-0.00997748	0/1:129.501:226:115:4374:111:4177:-314.546,0.0,-332.678:111:49:226:115,111:3994,0,4236:.:1:1:.:.:.:-0.0533013
chr17	38548371	.	T	TA	462.103	REJECT	NS=2;DP=344;DPB=388.438;AC=2;AN=2;AF=0.0;RO=270;AO=20;PRO=39.1667;PAO=32.1667;QR=10114;QA=652;PQR=1358.83;PQA=1096.83;SRF=145;SRR=125;SAF=16;SAR=4;SRP=6.2273;SAP=18.6449;AB=0.0581395;ABP=586.379;RUN=1;RPP=6.91895;RPPR=3.04247;RPL=7.0;RPR=13.0;EPP=3.44459;EPPR=3.52502;DPRA=0.0;ODDS=28.2737;GTI=0;TYPE=ins;CIGAR=1M1I15M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:122.104:84:65:2438:5:167:-11.8917,-16.3767,-223.356:5:6:80:.:.:1:.:.:.:-0.00997748	./1:160.002:260:205:7676:15:485:-40.0471,-54.3989,-703.536:15:6:254:.:.:1:.:.:.:-0.0533013
chr17	38548371	.	TA	T	462.103	REJECT	NS=2;DP=344;DPB=388.438;AC=2;AN=4;AF=0.5;RO=270;AO=44;PRO=39.1667;PAO=28.6667;QR=10114;QA=1554;PQR=1358.83;PQA=962.333;SRF=145;SRR=125;SAF=22;SAR=22;SRP=6.2273;SAP=3.0103;AB=0.127907;ABP=416.701;RUN=1;RPP=4.78696;RPPR=3.04247;RPL=25.0;RPR=19.0;EPP=7.94546;EPPR=3.52502;DPRA=0.0;ODDS=28.2737;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=60.9091;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.104:84:65:2438:10:347:-11.8917,0.0,-224.602:10:13:80:.:.:1:.:.:.:-0.00997748	0/1:160.002:260:205:7676:34:1207:-40.0471,0.0,-669.263:34:13:254:.:.:1:.:.:.:-0.0533013
chr17	38556770	.	T	C	11178.45	REJECT	NS=2;DP=297;DPB=346.0;AC=4;AN=4;AF=1.0;RO=0;AO=346;PRO=0.0;PAO=0.0;QR=0;QA=13225;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=131;SRP=0.0;SAP=47.2933;AB=0.0;ABP=0.0;RUN=1;RPP=14.081;RPPR=0.0;RPL=152.0;RPR=194.0;EPP=3.41196;EPPR=0.0;DPRA=0.0;ODDS=63.6118;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985549;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8323;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.43;SOR=1.2815	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.853:94:0:0:95:3632:-326.95,-25.7512,0.0:94:100:94:0,93:3889,280,0:1:.:1:.:.:.:-0.00997748	1/1:124.853:250:0:0:251:9593:-862.469,-67.5569,0.0:250:100:250:0,249:10588,728,0:.:1:1:.:.:.:-0.0533013
chr17	38670513	.	A	G	2957.94	PASS	SOMATIC;NS=2;DP=384;DPB=384.0;AC=1;AN=3;AF=0.25;RO=273;AO=110;PRO=0.0;PAO=0.0;QR=10604;QA=4246;PQR=0.0;PQA=0.0;SRF=143;SRR=130;SAF=58;SAR=52;SRP=4.35454;SAP=3.72096;AB=0.369128;ABP=47.3433;RUN=1;RPP=3.08926;RPPR=7.98162;RPL=54.0;RPR=56.0;EPP=3.72096;EPPR=4.35454;DPRA=3.46512;ODDS=54.0193;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996337;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.797;Dels=0.0;FS=0.0;HaplotypeScore=6.963;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.287;QD=12.96;ReadPosRankSum=0.681;SOR=0.688	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.29:84:85:3274:0:0:0.0,-23.0343,-294.74:0:0:83:82,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.645:297:188:7330:110:4246:-301.177,0.0,-578.939:110:37:297:179,105:38.0:0.37:2:3877,0,7274:.:1:1:.:.:1:-0.0533013
chr17	40475650	.	G	GA	2704.08	PASS	SOMATIC;NS=2;DP=289;DPB=334.857;AC=1;AN=4;AF=0.25;RO=195;AO=91;PRO=46.5;PAO=32.5;QR=7422;QA=3432;PQR=1656.0;PQA=1153.0;SRF=74;SRR=121;SAF=34;SAR=57;SRP=27.6092;SAP=15.6335;AB=0.423256;ABP=14.0091;RUN=1;RPP=20.4059;RPPR=19.9478;RPL=59.0;RPR=32.0;EPP=3.03416;EPPR=34.2906;DPRA=2.90541;ODDS=52.1743;GTI=0;TYPE=ins;CIGAR=1M1I13M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=40475650;HOMLEN=3;HOMSEQ=AAA;SVLEN=1;SVTYPE=INS;BaseQRankSum=1.541;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.089;QD=12.45;RPA=3,4;RU=A;ReadPosRankSum=-0.049;SOR=0.617;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:140.958:81:73:2771:0:0:0.0,-22.233,-277.758:0:0:81:89,0:0.11236,0.0:60.0,0.0:38.1346,0.0:0.0,0.0:0,0:0,0:29,60,0,0:.:.:.:0:.:0:.:-0.00997748	0/1:119.979:261:122:4651:91:3432:-278.53,0.0,-405.245:102:42:233:140,102:0.106918,0.0882353:60.0,60.1961:38.5565,38.6769:0.00130634,0.0:41,20:57,21:62,97,42,60:3288,0,4788:.:1:1:1:1:.:-0.0533013
chr17	40854534	.	G	GT	2396.18	PASS	SOMATIC;NS=2;DP=343;DPB=381.333;AC=1;AN=4;AF=0.25;RO=244;AO=96;PRO=4.0;PAO=6.0;QR=9180;QA=3479;PQR=88.0;PQA=162.0;SRF=148;SRR=96;SAF=63;SAR=33;SRP=27.0745;SAP=23.3679;AB=0.360902;ABP=47.7132;RUN=1;RPP=10.339;RPPR=6.57009;RPL=39.0;RPR=57.0;EPP=3.37221;EPPR=17.2495;DPRA=3.45455;ODDS=48.3925;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.4167;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=40854534;HOMLEN=1;HOMSEQ=T;SVLEN=1;SVTYPE=INS;BaseQRankSum=1.242;FS=4.434;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=-1.208;QD=12.31;RPA=1,2;RU=T;ReadPosRankSum=0.317;SOR=0.972;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:77:76:2814:0:0:0.0,-20.5906,-253.402:0:0:77:78,0:0.179487,0.0:60.0,0.0:37.31,0.0:0.00131926,0.0:0,0:0,0:48,30,0,0:.:.:.:0:.:0:.:-0.00997748	0/1:129.501:268:168:6366:96:3479:-247.577,0.0,-500.705:99:36:268:169,100:0.0795455,0.15:60.0,60.8:38.1464,38.1396:0.00179964,0.00103413:62,21:36,21:107,69,66,34:3337,0,6265:.:1:1:1:1:.:-0.0533013
chr17	41096398	.	C	T	13293.8	REJECT	NS=2;DP=348;DPB=402.0;AC=4;AN=4;AF=1.0;RO=0;AO=402;PRO=0.0;PAO=0.0;QR=0;QA=15433;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=227;SAR=175;SRP=0.0;SAP=17.6164;AB=0.0;ABP=0.0;RUN=1;RPP=13.4679;RPPR=0.0;RPL=179.0;RPR=223.0;EPP=10.8103;EPPR=0.0;DPRA=0.0;ODDS=69.1705;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99005;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8656;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.85;SOR=0.9975	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.86:101:0:0:104:3933:-353.982,-28.1653,0.0:101:100:101:0,99:4118,297,0:1:.:1:.:.:.:-0.00997748	1/1:123.86:296:0:0:298:11500:-1034.39,-80.7252,0.0:296:100:296:0,295:12807,885,0:.:1:1:.:.:.:-0.0533013
chr17	41098108	.	G	A	13221.4	REJECT	NS=2;DP=347;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=400;PRO=0.0;PAO=0.0;QR=0;QA=15480;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=163;SAR=237;SRP=0.0;SAP=32.7378;AB=0.0;ABP=0.0;RUN=1;RPP=9.28586;RPPR=0.0;RPL=217.0;RPR=183.0;EPP=71.1077;EPPR=0.0;DPRA=0.0;ODDS=71.6997;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9925;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.755;SOR=1.1475	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:108:4181:-376.286,-29.2637,0.0:106:100:106:0,104:4237,313,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:293:0:0:292:11299:-1016.31,-79.1022,0.0:292:100:292:0,292:12692,876,0:.:1:1:.:.:.:-0.0533013
chr17	41098676	.	C	CT	12275.3	REJECT	NS=2;DP=336;DPB=471.4;AC=4;AN=4;AF=1.0;RO=2;AO=372;PRO=10.0;PAO=18.0;QR=78;QA=13633;PQR=273.5;PQA=537.5;SRF=1;SRR=1;SAF=212;SAR=160;SRP=3.0103;SAP=18.7943;AB=0.0;ABP=0.0;RUN=1;RPP=56.8068;RPPR=3.0103;RPL=138.0;RPR=234.0;EPP=56.8068;EPPR=7.35324;DPRA=0.0;ODDS=56.6651;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.1237;MQMR=60.0;PAIRED=0.991935;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41098676;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=-1.081;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.14;MQRankSum=0.48;QD=29.51;ReadPosRankSum=-0.522;SOR=1.035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:84:3082:-277.191,-22.7343,0.0:84:100:84:14,87:3342,250,0:1:.:1:1:.:.:-0.00997748	1/1:129.501:294:2:78:288:10551:-965.716,-73.5308,0.0:292:99:294:54,308:13209,874,0:.:1:1:1:.:.:-0.0533013
chr17	41103938	.	T	C	13277.2	REJECT	NS=2;DP=353;DPB=400.0;AC=4;AN=4;AF=1.0;RO=0;AO=400;PRO=0.0;PAO=0.0;QR=0;QA=15211;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=190;SAR=210;SRP=0.0;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=4.07432;RPPR=0.0;RPL=193.0;RPR=207.0;EPP=3.20573;EPPR=0.0;DPRA=0.0;ODDS=62.3428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.785;SOR=0.8295	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.4715:92:0:0:93:3565:-320.907,-25.2001,0.0:92:100:92:0,91:3684,273,0:1:.:1:.:.:.:-0.00997748	1/1:126.4715:307:0:0:307:11646:-1047.49,-83.1039,0.0:307:100:307:0,307:12944,900,0:.:1:1:.:.:.:-0.0533013
chr17	41104750	.	C	A	15246.3	REJECT	NS=2;DP=402;DPB=463.0;AC=4;AN=4;AF=1.0;RO=0;AO=462;PRO=0.0;PAO=0.0;QR=0;QA=17837;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=229;SRP=0.0;SAP=3.0855;AB=0.0;ABP=0.0;RUN=1;RPP=39.4083;RPPR=0.0;RPL=187.0;RPR=275.0;EPP=132.528;EPPR=0.0;DPRA=0.0;ODDS=79.2078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989177;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9663;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.74;SOR=0.8125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:118:0:0:120:4641:-417.673,-32.5244,0.0:118:100:118:0,117:4747,351,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:342:0:0:342:13196:-1186.88,-92.6347,0.0:341:100:341:0,340:14687,1014,0:.:1:1:.:.:.:-0.0533013
chr17	41223094	.	T	C	1555.745	REJECT	NS=2;DP=394;DPB=435.0;AC=2;AN=4;AF=0.5;RO=344;AO=91;PRO=0.0;PAO=0.0;QR=13043;QA=3426;PQR=0.0;PQA=0.0;SRF=158;SRR=186;SAF=50;SAR=41;SRP=7.95924;SAP=4.94315;AB=0.209195;ABP=322.536;RUN=1;RPP=5.89764;RPPR=4.24753;RPL=51.0;RPR=40.0;EPP=3.03416;EPPR=3.64154;DPRA=0.0;ODDS=208.572;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997093;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2165;Dels=0.0;FS=4.944;HaplotypeScore=7.8319;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.172;QD=8.835;ReadPosRankSum=0.935;SOR=0.8595;ClippingRankSum=0.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:81:45:1723:37:1351:-99.4089,0.0,-132.94:36:44:81:45,35:1155,0,1654:1:.:1:.:.:.:-0.00997748	0/1:129.501:353:299:11320:54:2075:-91.0804,0.0,-922.55:54:15:353:299,54:1295,0,11542:.:1:1:.:.:.:-0.0533013
chr17	41231221	.	A	C	2594.895	REJECT	NS=2;DP=473;DPB=539.0;AC=2;AN=4;AF=0.5;RO=413;AO=126;PRO=0.0;PAO=0.0;QR=16105;QA=4795;PQR=0.0;PQA=0.0;SRF=243;SRR=170;SAF=76;SAR=50;SRP=31.0291;SAP=14.6604;AB=0.233766;ABP=334.851;RUN=1;RPP=53.2644;RPPR=171.476;RPL=36.0;RPR=90.0;EPP=8.59409;EPPR=7.43211;DPRA=0.0;ODDS=124.282;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984127;PAIREDR=0.990315;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.443;Dels=0.0;FS=1.8545;HaplotypeScore=15.7279;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.147;QD=10.69;ReadPosRankSum=0.604;SOR=0.89;ClippingRankSum=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:127:52:2021:77:2915:-227.378,0.0,-146.907:76:60:127:51,75:2490,0,1658:1:.:1:.:.:.:-0.00997748	0/1:129.501:408:361:14084:49:1880:-58.0407,0.0,-1155.55:48:12:408:358,48:842,0,14388:.:1:1:.:.:.:-0.0533013
chr17	41231516	.	C	T	604.547	REJECT	NS=2;DP=174;DPB=174.0;AC=1;AN=4;AF=0.25;RO=143;AO=31;PRO=0.0;PAO=0.0;QR=5439;QA=1191;PQR=0.0;PQA=0.0;SRF=53;SRR=90;SAF=6;SAR=25;SRP=23.7987;SAP=28.2974;AB=0.469388;ABP=3.40914;RUN=1;RPP=4.76149;RPPR=14.0803;RPL=18.0;RPR=13.0;EPP=4.76149;EPPR=15.781;DPRA=0.0;ODDS=19.0958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.2903;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986014;technology.ILLUMINA=1.0;BaseQRankSum=0.907;FS=2.851;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=0.271;QD=16.18;ReadPosRankSum=2.322;SOR=1.329;ClippingRankSum=1.167	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.2255:46:26:973:23:887:-66.6031,0.0,-74.3862:21:46:46:24,20:740,0,841:1:.:1:.:.:.:-0.00997748	0/0:82.9318:125:117:4466:8:304:0.0,-6.64059,-374.676:8:6:125:.:.:.:.:0:.:.:.:-0.0533013
chr17	41234470	.	A	G	1569.1	REJECT	NS=2;DP=358;DPB=404.0;AC=2;AN=4;AF=0.5;RO=319;AO=85;PRO=0.0;PAO=0.0;QR=12025;QA=3162;PQR=0.0;PQA=0.0;SRF=195;SRR=124;SAF=53;SAR=32;SRP=37.325;SAP=14.2764;AB=0.210396;ABP=297.32;RUN=1;RPP=3.24022;RPPR=3.07156;RPL=44.0;RPR=41.0;EPP=6.10145;EPPR=10.4233;DPRA=0.0;ODDS=89.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99373;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.439;Dels=0.0;FS=4.0355;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.624;QD=9.07;ReadPosRankSum=0.7355;SOR=0.595;ClippingRankSum=-0.481	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:42:1497:48:1771:-135.079,0.0,-110.418:48:53:90:42,48:1484,0,1355:1:.:1:.:.:.:-0.00997748	0/1:129.501:313:277:10528:37:1391:-40.1107,0.0,-861.919:37:12:313:276,37:643,0,10759:.:1:1:.:.:.:-0.0533013
chr17	41244000	.	T	C	1865.37	REJECT	NS=2;DP=339;DPB=391.0;AC=2;AN=4;AF=0.5;RO=305;AO=85;PRO=0.0;PAO=0.0;QR=11649;QA=3318;PQR=0.0;PQA=0.0;SRF=135;SRR=170;SAF=43;SAR=42;SRP=11.7318;SAP=3.03585;AB=0.217391;ABP=274.256;RUN=1;RPP=12.2327;RPPR=4.21351;RPL=52.0;RPR=33.0;EPP=3.24022;EPPR=3.58699;DPRA=0.0;ODDS=53.0838;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988235;PAIREDR=0.990164;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.375;Dels=0.0;FS=2.1905;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.3045;QD=10.13;ReadPosRankSum=1.0865;SOR=0.557;ClippingRankSum=0.75	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.737:102:46:1759:56:2188:-169.294,0.0,-130.678:56:55:102:46,56:1952,0,1579:1:.:1:.:.:.:-0.00997748	0/1:118.737:287:259:9890:29:1130:-23.68,0.0,-811.562:29:10:287:258,29:429,0,10076:.:1:1:.:.:.:-0.0533013
chr17	41244435	.	T	C	1963.0349999999999	REJECT	NS=2;DP=369;DPB=425.0;AC=2;AN=4;AF=0.5;RO=328;AO=97;PRO=0.0;PAO=0.0;QR=12553;QA=3596;PQR=0.0;PQA=0.0;SRF=162;SRR=166;SAF=43;SAR=54;SRP=3.11623;SAP=5.71904;AB=0.228235;ABP=275.65;RUN=1;RPP=4.10723;RPPR=3.434;RPL=45.0;RPR=52.0;EPP=3.03269;EPPR=15.8273;DPRA=0.0;ODDS=102.42;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.993902;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.407;Dels=0.0;FS=2.622;HaplotypeScore=4.8785;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.688;QD=10.215;ReadPosRankSum=0.8745;SOR=0.9625;ClippingRankSum=-0.478	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:52:1959:59:2147:-163.182,0.0,-146.284:56:52:107:50,54:1929,0,1655:1:.:1:.:.:.:-0.00997748	0/1:129.501:313:276:10594:38:1449:-45.3067,0.0,-867.829:38:12:313:275,38:700,0,10856:.:1:1:.:.:.:-0.0533013
chr17	41244936	.	G	A	1705.2649999999999	REJECT	NS=2;DP=334;DPB=383.0;AC=2;AN=4;AF=0.5;RO=299;AO=84;PRO=0.0;PAO=0.0;QR=11358;QA=3201;PQR=0.0;PQA=0.0;SRF=145;SRR=154;SAF=39;SAR=45;SRP=3.59856;SAP=3.94093;AB=0.219321;ABP=265.089;RUN=1;RPP=3.0103;RPPR=3.01756;RPL=42.0;RPR=42.0;EPP=3.1137;EPPR=8.30463;DPRA=0.0;ODDS=90.6178;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.5;MQMR=60.0;PAIRED=0.97619;PAIREDR=0.989967;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0405;Dels=0.0;FS=3.6235;HaplotypeScore=4.8634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.538;QD=9.56;ReadPosRankSum=0.608;SOR=0.882;ClippingRankSum=-0.316	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:47:1744:50:1894:-144.031,0.0,-130.721:49:52:96:46,49:1653,0,1552:1:.:1:.:.:.:-0.00997748	0/1:129.501:286:252:9614:34:1307:-40.1332,0.0,-787.315:34:12:286:252,34:606,0,9875:.:1:1:.:.:.:-0.0533013
chr17	41245237	.	A	G	1753.59	REJECT	NS=2;DP=350;DPB=404.0;AC=2;AN=4;AF=0.5;RO=310;AO=94;PRO=0.0;PAO=0.0;QR=12017;QA=3575;PQR=0.0;PQA=0.0;SRF=159;SRR=151;SAF=57;SAR=37;SRP=3.4586;SAP=12.2506;AB=0.232673;ABP=253.783;RUN=1;RPP=6.33681;RPPR=6.4006;RPL=41.0;RPR=53.0;EPP=5.32038;EPPR=3.4586;DPRA=0.0;ODDS=202.941;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978723;PAIREDR=0.996774;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.5705;Dels=0.0;FS=6.57;HaplotypeScore=8.7584;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.426;QD=8.995;ReadPosRankSum=0.4325;SOR=0.9285;ClippingRankSum=0.171	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:63:2437:44:1682:-122.388,0.0,-190.349:42:40:104:61,41:1484,0,2253:1:.:1:.:.:.:-0.00997748	0/1:129.501:297:247:9580:50:1893:-89.7912,0.0,-781.264:50:17:297:247,50:1214,0,9870:.:1:1:.:.:.:-0.0533013
chr17	41245466	.	G	A	2247.92	REJECT	NS=2;DP=396;DPB=451.0;AC=2;AN=4;AF=0.5;RO=336;AO=114;PRO=0.0;PAO=0.0;QR=12640;QA=4352;PQR=0.0;PQA=0.0;SRF=177;SRR=159;SAF=58;SAR=56;SRP=5.10422;SAP=3.08649;AB=0.252772;ABP=242.445;RUN=1;RPP=3.31507;RPPR=3.24296;RPL=55.0;RPR=59.0;EPP=3.31507;EPPR=3.94093;DPRA=0.0;ODDS=260.734;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994048;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.446;Dels=0.0;FS=1.216;HaplotypeScore=4.9634;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1665;QD=10.805;ReadPosRankSum=0.526;SOR=0.6795;ClippingRankSum=0.249	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:55:2061:54:2062:-156.069,0.0,-155.973:54:50:108:54,54:1884,0,1781:1:.:1:.:.:.:-0.00997748	0/1:129.501:342:281:10579:60:2290:-113.69,0.0,-859.189:60:18:341:281,60:1542,0,10745:.:1:1:.:.:.:-0.0533013
chr17	41251931	.	G	A	1647.36	PASS	SOMATIC;NS=2;DP=256;DPB=256.0;AC=1;AN=3;AF=0.25;RO=192;AO=64;PRO=0.0;PAO=0.0;QR=7322;QA=2501;PQR=0.0;PQA=0.0;SRF=66;SRR=126;SAF=21;SAR=43;SRP=43.7254;SAP=19.4321;AB=0.353591;ABP=36.7101;RUN=1;RPP=46.9826;RPPR=155.194;RPL=50.0;RPR=14.0;EPP=4.23175;EPPR=29.068;DPRA=2.41333;ODDS=47.7786;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994792;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.079;Dels=0.0;FS=0.6;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.515;QD=12.37;ReadPosRankSum=0.31;SOR=0.744	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:150.653:74:75:2832:0:0:0.0,-20.324,-255.008:0:0:74:73,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:124.8265:181:117:4490:64:2501:-175.972,0.0,-354.911:64:35:181:113,63:39.0:0.364:2:2268,0,4468:.:1:1:.:.:1:-0.0533013
chr17	41277187	.	G	C	1566.75	REJECT	NS=2;DP=378;DPB=429.0;AC=2;AN=4;AF=0.5;RO=339;AO=89;PRO=0.0;PAO=0.0;QR=12181;QA=3157;PQR=0.0;PQA=0.0;SRF=183;SRR=156;SAF=36;SAR=53;SRP=7.67993;SAP=10.0615;AB=0.207459;ABP=321.903;RUN=1;RPP=3.22989;RPPR=3.32417;RPL=46.0;RPR=43.0;EPP=3.22989;EPPR=3.06795;DPRA=0.0;ODDS=112.518;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99705;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.308;Dels=0.0;FS=7.047;HaplotypeScore=16.4565;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9045;QD=8.885;ReadPosRankSum=-1.331;SOR=1.099;ClippingRankSum=-0.943	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:53:1917:47:1635:-120.122,0.0,-145.532:46:47:99:52,46:1532,0,1743:1:.:1:.:.:.:-0.00997748	0/1:129.501:327:286:10264:42:1522:-49.1186,0.0,-834.475:42:13:327:285,42:824,0,10271:.:1:1:.:.:.:-0.0533013
chr17	41371844	.	A	G	2405.795	REJECT	NS=2;DP=390;DPB=450.0;AC=2;AN=4;AF=0.5;RO=338;AO=111;PRO=0.0;PAO=0.0;QR=12145;QA=4173;PQR=0.0;PQA=0.0;SRF=234;SRR=104;SAF=70;SAR=41;SRP=111.584;SAP=19.4626;AB=0.246667;ABP=253.859;RUN=1;RPP=3.18637;RPPR=3.24158;RPL=57.0;RPR=54.0;EPP=11.6375;EPPR=46.2085;DPRA=0.0;ODDS=110.956;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.955;MQMR=59.9349;PAIRED=1.0;PAIREDR=0.988166;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.0545;Dels=0.0;FS=2.4665;HaplotypeScore=14.6282;MLEAC=1;MLEAF=0.5;MQ=59.975;MQRankSum=-0.203;QD=11.685;ReadPosRankSum=-0.0165;SOR=0.437;ClippingRankSum=0.208	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:45:1625:71:2628:-205.102,0.0,-115.635:69:60:113:44,67:2377,0,1312:1:.:1:.:.:.:-0.00997748	0/1:129.501:332:293:10520:40:1545:-49.3728,0.0,-856.114:40:12:331:290,40:824,0,10428:.:1:1:.:.:.:-0.0533013
chr17	41371958	.	T	C	2018.5049999999999	REJECT	NS=2;DP=411;DPB=469.0;AC=2;AN=4;AF=0.5;RO=365;AO=104;PRO=0.0;PAO=0.0;QR=13925;QA=3983;PQR=0.0;PQA=0.0;SRF=165;SRR=200;SAF=39;SAR=65;SRP=10.2981;SAP=17.1249;AB=0.221748;ABP=318.411;RUN=1;RPP=4.34659;RPPR=5.15798;RPL=48.0;RPR=56.0;EPP=3.76196;EPPR=28.1458;DPRA=0.0;ODDS=147.657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990385;PAIREDR=0.983562;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7495;Dels=0.0;FS=2.781;HaplotypeScore=4.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0945;QD=9.45;ReadPosRankSum=0.4235;SOR=0.994;ClippingRankSum=-1.217	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:56:2062:57:2192:-166.682,0.0,-154.977:56:50:110:53,55:1824,0,1681:1:.:1:.:.:.:-0.00997748	0/1:129.501:354:309:11863:47:1791:-64.6847,0.0,-970.556:47:13:354:306,47:990,0,12055:.:1:1:.:.:.:-0.0533013
chr17	41375503	.	T	A	228.29	REJECT	NS=2;DP=243;DPB=243.0;AC=1;AN=4;AF=0.25;RO=215;AO=28;PRO=0.0;PAO=0.0;QR=7807;QA=1068;PQR=0.0;PQA=0.0;SRF=189;SRR=26;SAF=27;SAR=1;SRP=271.354;SAP=55.4358;AB=0.213333;ABP=56.5443;RUN=1;RPP=34.0313;RPPR=27.2601;RPL=24.0;RPR=4.0;EPP=40.5458;EPPR=3.2628;DPRA=0.0;ODDS=41.7467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=51.5357;MQMR=59.4512;PAIRED=1.0;PAIREDR=0.995349;technology.ILLUMINA=1.0;BaseQRankSum=0.913;FS=6.181;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-0.205;QD=14.0;ReadPosRankSum=-1.875;SOR=0.122;ClippingRankSum=0.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:69:59:2080:16:623:-33.122,0.0,-166.704:20:29:69:39,24:910,0,1495:1:.:1:.:.:.:-0.00997748	0/0:160.002:168:156:5727:12:445:0.0,-10.1095,-480.058:12:7:168:.:.:.:.:0:.:.:.:-0.0533013
chr17	41375505	.	ACACT	TCACA	505.215	REJECT	NS=2;DP=199;DPB=223.6;AC=2;AN=4;AF=0.5;RO=168;AO=25;PRO=30.0;PAO=8.0;QR=6150;QA=899;PQR=1000.0;PQA=265.0;SRF=152;SRR=16;SAF=18;SAR=7;SRP=242.079;SAP=13.5202;AB=0.125628;ABP=245.266;RUN=1;RPP=57.2971;RPPR=4.87156;RPL=0.0;RPR=25.0;EPP=13.5202;EPPR=6.31921;DPRA=0.0;ODDS=21.9781;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=3.5;LEN=5;MQM=57.92;MQMR=59.7024;PAIRED=0.96;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:135.919:54:37:1328:14:493:-50.3727,0.0,-144.541:14:27:51:.:.:1:.:.:.:-0.00997748	0/1:95.4494:145:131:4822:11:406:-13.6634,0.0,-429.656:11:8:142:.:.:1:.:.:.:-0.0533013
chr17	41375509	.	T	TCTCACA	229.73	PASS	DP=69;AC=1;AN=4;AF=0.5;BaseQRankSum=0.01;FS=4.207;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=0.166;QD=3.33;ReadPosRankSum=-0.44;SOR=0.175;ClippingRankSum=-0.656	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:45,12:57:99.0:267,0,1722:12:21:57:1:.:.:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0533013
chr17	41375555	.	T	G	1746.2150000000001	REJECT	NS=2;DP=321;DPB=378.0;AC=2;AN=4;AF=0.5;RO=282;AO=94;PRO=0.0;PAO=0.0;QR=10540;QA=3428;PQR=0.0;PQA=0.0;SRF=181;SRR=101;SAF=61;SAR=33;SRP=52.2919;SAP=21.1213;AB=0.248677;ABP=210.392;RUN=1;RPP=14.1911;RPPR=40.7416;RPL=36.0;RPR=58.0;EPP=3.37991;EPPR=30.7312;DPRA=0.0;ODDS=154.494;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.0638;MQMR=60.0;PAIRED=0.978723;PAIREDR=0.996454;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7505;Dels=0.0;FS=0.3925;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=0.139;QD=8.83;ReadPosRankSum=-0.022;SOR=0.656;ClippingRankSum=0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.671:107:58:2121:51:1859:-137.793,0.0,-161.402:49:47:106:55,48:1541,0,1784:1:.:1:.:.:.:-0.00997748	0/1:119.671:265:224:8419:43:1569:-68.7029,0.0,-685.048:42:16:265:222,42:887,0,8492:.:1:1:.:.:.:-0.0533013
chr17	41375597	.	A	G	1898.335	REJECT	NS=2;DP=413;DPB=477.0;AC=2;AN=4;AF=0.5;RO=365;AO=110;PRO=0.0;PAO=0.0;QR=13689;QA=4154;PQR=0.0;PQA=0.0;SRF=190;SRR=175;SAF=61;SAR=49;SRP=4.34888;SAP=5.85295;AB=0.230608;ABP=303.689;RUN=1;RPP=3.72096;RPPR=3.73016;RPL=52.0;RPR=58.0;EPP=23.2247;EPPR=21.0067;DPRA=0.0;ODDS=248.786;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.954545;PAIREDR=0.994521;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0925;Dels=0.0;FS=4.598;HaplotypeScore=9.6898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.17;QD=7.9;ReadPosRankSum=0.3495;SOR=0.9445;ClippingRankSum=-0.353	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4015:120:72:2698:51:1902:-137.845,0.0,-209.523:49:41:120:70,48:1454,0,2299:1:.:1:.:.:.:-0.00997748	0/1:117.4015:351:293:10991:59:2252:-107.289,0.0,-893.259:57:16:349:291,56:1396,0,11092:.:1:1:.:.:.:-0.0533013
chr17	43131480	.	A	T	5817.115	REJECT	NS=2;DP=360;DPB=410.0;AC=2;AN=4;AF=0.5;RO=207;AO=203;PRO=0.0;PAO=0.0;QR=7875;QA=7783;PQR=0.0;PQA=0.0;SRF=104;SRR=103;SAF=105;SAR=98;SRP=3.02079;SAP=3.53445;AB=0.495122;ABP=3.09504;RUN=1;RPP=7.72764;RPPR=5.3706;RPL=112.0;RPR=91.0;EPP=6.10171;EPPR=20.6443;DPRA=0.0;ODDS=301.08;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.697;Dels=0.0;FS=0.43;HaplotypeScore=1.9652;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2235;QD=17.21;ReadPosRankSum=-0.195;SOR=0.732;ClippingRankSum=2.418	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.888:99:55:2091:45:1766:-131.854,0.0,-161.116:44:45:99:54,44:1564,0,1814:1:.:1:.:.:.:-0.00997748	0/1:117.888:310:152:5784:158:6017:-457.28,0.0,-436.294:158:51:310:152,158:5840,0,5527:.:1:1:.:.:.:-0.0533013
chr17	46505696	.	A	G	5344.985000000001	REJECT	NS=2;DP=347;DPB=401.0;AC=2;AN=4;AF=0.5;RO=208;AO=193;PRO=0.0;PAO=0.0;QR=8082;QA=7422;PQR=0.0;PQA=0.0;SRF=91;SRR=117;SAF=82;SAR=111;SRP=10.0676;SAP=12.4725;AB=0.481297;ABP=4.22871;RUN=1;RPP=3.56161;RPPR=3.17734;RPL=100.0;RPR=93.0;EPP=10.0423;EPPR=12.4061;DPRA=0.0;ODDS=330.97;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994819;PAIREDR=0.980769;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0155;Dels=0.0;FS=2.3725;HaplotypeScore=5.8571;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1775;QD=16.91;ReadPosRankSum=0.4385;SOR=0.8965;ClippingRankSum=-0.044	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:103:54:2111:51:1935:-145.694,0.0,-161.555:50:49:103:52,49:1682,0,1775:1:.:1:.:.:.:-0.00997748	0/1:129.501:295:154:5971:142:5487:-413.353,0.0,-456.884:141:48:295:153,141:5205,0,5751:.:1:1:.:.:.:-0.0533013
chr17	46805590	.	G	A	11146.6	REJECT	NS=2;DP=425;DPB=491.0;AC=2;AN=4;AF=0.5;RO=114;AO=375;PRO=0.0;PAO=0.0;QR=4401;QA=13938;PQR=0.0;PQA=0.0;SRF=54;SRR=60;SAF=192;SAR=183;SRP=3.69603;SAP=3.47934;AB=0.763747;ABP=299.679;RUN=1;RPP=4.31318;RPPR=3.69603;RPL=180.0;RPR=195.0;EPP=3.98891;EPPR=12.2295;DPRA=0.0;ODDS=171.897;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997333;PAIREDR=0.991228;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-2.507;Dels=0.0;FS=2.9075;HaplotypeScore=8.7085;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1465;QD=24.62;ReadPosRankSum=-0.8935;SOR=0.722;ClippingRankSum=-0.919	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.603:131:64:2485:67:2466:-186.436,0.0,-188.146:67:51:131:64,67:2199,0,2316:1:.:1:.:.:.:-0.00997748	0/1:117.603:359:50:1916:308:11472:-934.952,0.0,-75.8387:308:86:358:50,308:11757,0,1071:.:1:1:.:.:.:-0.0533013
chr17	48263021	.	C	T	6198.535	REJECT	NS=2;DP=269;DPB=305.0;AC=3;AN=4;AF=0.75;RO=79;AO=226;PRO=0.0;PAO=0.0;QR=2969;QA=8337;PQR=0.0;PQA=0.0;SRF=33;SRR=46;SAF=99;SAR=127;SRP=7.6556;SAP=10.5432;AB=0.660944;ABP=55.4332;RUN=1;RPP=35.3326;RPPR=15.1321;RPL=142.0;RPR=84.0;EPP=5.47002;EPPR=3.03779;DPRA=0.0;ODDS=45.8779;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995575;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.39;Dels=0.0;FS=0.0;HaplotypeScore=11.7464;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.408;QD=26.915;ReadPosRankSum=-0.68;SOR=0.882	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.9865:70:0:0:72:2669:-240.345,-19.4986,0.0:70:100:70:0,68:2874,204,0:1:.:1:.:.:.:-0.00997748	0/1:119.9865:233:79:2969:154:5668:-446.838,0.0,-204.789:154:66:233:79,154:5653,0,2628:.:1:1:.:.:.:-0.0533013
chr17	48265426	.	A	G	9098.635	REJECT	NS=2;DP=373;DPB=432.0;AC=3;AN=4;AF=0.75;RO=106;AO=326;PRO=0.0;PAO=0.0;QR=4070;QA=12432;PQR=0.0;PQA=0.0;SRF=47;SRR=59;SAF=141;SAR=185;SRP=5.96022;SAP=15.9059;AB=0.66242;ABP=74.9593;RUN=1;RPP=4.71551;RPPR=5.96022;RPL=155.0;RPR=171.0;EPP=5.16845;EPPR=3.74778;DPRA=0.0;ODDS=74.5642;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996933;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.965;Dels=0.0;FS=0.0;HaplotypeScore=6.8297;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.199;QD=25.9;ReadPosRankSum=1.232;SOR=0.91	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:117:0:0:118:4462:-401.553,-31.9568,0.0:117:100:117:0,116:4811,348,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:314:106:4070:208:7970:-631.814,0.0,-281.062:208:66:314:106,208:7968,0,3625:.:1:1:.:.:.:-0.0533013
chr17	48265495	.	T	C	9485.91	REJECT	NS=2;DP=256;DPB=296.4;AC=4;AN=4;AF=1.0;RO=0;AO=271;PRO=3.5;PAO=14.0;QR=0;QA=10035;PQR=92.0;PQA=400.5;SRF=0;SRR=0;SAF=75;SAR=196;SRP=0.0;SAP=120.326;AB=0.0;ABP=0.0;RUN=1;RPP=16.4798;RPPR=0.0;RPL=156.0;RPR=115.0;EPP=4.81318;EPPR=0.0;DPRA=0.0;ODDS=24.1717;GTI=0;TYPE=snp;CIGAR=1X4M;NUMALT=2;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=13.5144;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.11;SOR=1.993	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:101.988:74:0:0:67:2547:-258.693,-20.8664,0.0:71:96:74:0,75:3095,226,0:1:.:1:.:.:.:-0.00997748	1/1:125.8895:220:0:0:204:7488:-752.893,-61.4599,0.0:215:98:219:0,227:9060,644,0:.:1:1:.:.:.:-0.0533013
chr17	48265495	.	TGGGA	CGGGG	9940.05	REJECT	NS=2;DP=285;DPB=296.4;AC=0;AN=4;AF=0.0;RO=0;AO=13;PRO=3.5;PAO=10.5;QR=0;QA=110;PQR=92.0;PQA=308.5;SRF=0;SRR=0;SAF=13;SAR=0;SRP=0.0;SAP=31.2394;AB=0.0;ABP=0.0;RUN=1;RPP=31.2394;RPPR=0.0;RPL=13.0;RPR=0.0;EPP=31.2394;EPPR=0.0;DPRA=0.0;ODDS=24.1717;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=2;MEANALT=2.5;LEN=5;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:104.976:73:0:0:6:36:-258.693,-217.081,-218.657:6:8:73:.:.:.:.:.:.:-0.00997748	0/0:152.779:212:0:0:7:74:-752.893,-663.371,-680.248:7:3:211:.:.:.:.:.:.:-0.0533013
chr17	48265542	.	G	T	1020.72	PASS	SOMATIC;NS=2;DP=203;DPB=203.0;AC=1;AN=3;AF=0.25;RO=156;AO=47;PRO=0.0;PAO=0.0;QR=5927;QA=1694;PQR=0.0;PQA=0.0;SRF=36;SRR=120;SAF=8;SAR=39;SRP=101.228;SAP=47.41;AB=0.313333;ABP=48.4085;RUN=1;RPP=5.27418;RPPR=27.5646;RPL=27.0;RPR=20.0;EPP=4.16534;EPPR=3.06598;DPRA=2.83019;ODDS=34.1071;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.401;Dels=0.0;FS=5.255;HaplotypeScore=5.799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.276;QD=9.05;ReadPosRankSum=1.029;SOR=1.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.44:52:53:2076:0:0:0.0,-14.3865,-187.05:0:0:52:52,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:118.967:150:103:3851:47:1694:-111.807,0.0,-305.943:47:31:150:101,45:36.0:0.306:2:1385,0,3870:.:1:1:.:.:1:-0.0533013
chr17	48266160	.	CAG	C	17.5267	REJECT	NS=2;DP=275;DPB=344.238;AC=2;AN=3;AF=0.25;RO=229;AO=23;PRO=64.8333;PAO=43.8333;QR=8617;QA=838;PQR=2307.0;PQA=1545.0;SRF=96;SRR=133;SAF=5;SAR=18;SRP=15.9917;SAP=18.9659;AB=0.0882353;ABP=303.44;RUN=1;RPP=3.86001;RPPR=14.6263;RPL=10.0;RPR=13.0;EPP=3.86001;EPPR=3.01978;DPRA=0.0;ODDS=4.01767;GTI=0;TYPE=del;CIGAR=1M2D18M;NUMALT=2;MEANALT=6.5;LEN=2;MQM=60.4348;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991266;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.9432:71:59:2226:5:184:0.0,-2.41233,-202.927:5:7:68:.:.:1:.:.:.:-0.00997748	0/1:17.5267:204:170:6391:18:654:-6.79884,0.0,-572.428:18:9:194:.:.:1:.:.:.:-0.0533013
chr17	48266160	.	CAGAG	C	17.5267	REJECT	NS=2;DP=275;DPB=344.238;AC=2;AN=2;AF=0.0;RO=229;AO=10;PRO=64.8333;PAO=38.3333;QR=8617;QA=385;PQR=2307.0;PQA=1340.0;SRF=96;SRR=133;SAF=3;SAR=7;SRP=15.9917;SAP=6.48466;AB=0.0294118;ABP=395.408;RUN=1;RPP=6.48466;RPPR=14.6263;RPL=7.0;RPR=3.0;EPP=10.8276;EPPR=3.01978;DPRA=0.0;ODDS=4.01767;GTI=0;TYPE=del;CIGAR=1M4D16M;NUMALT=2;MEANALT=6.5;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991266;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.9432:71:59:2226:4:152:0.0,-5.5667,-212.652:4:6:68:.:.:1:.:.:.:-0.00997748	./1:17.5267:204:170:6391:6:233:-6.79884,-42.1938,-666.691:6:3:194:.:.:1:.:.:.:-0.0533013
chr17	48266669	.	G	C	12015.05	REJECT	NS=2;DP=318;DPB=364.0;AC=4;AN=4;AF=1.0;RO=0;AO=364;PRO=0.0;PAO=0.0;QR=0;QA=13870;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=163;SAR=201;SRP=0.0;SAP=11.6246;AB=0.0;ABP=0.0;RUN=1;RPP=4.53749;RPPR=0.0;RPL=190.0;RPR=174.0;EPP=7.04303;EPPR=0.0;DPRA=0.0;ODDS=61.7044;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994505;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9571;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.825;SOR=0.986	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:92:3493:-314.435,-24.9228,0.0:91:100:91:0,90:3703,270,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:272:0:0:272:10377:-933.448,-73.6808,0.0:272:100:272:0,272:11635,813,0:.:1:1:.:.:.:-0.0533013
chr17	48267291	.	G	C	4750.965	REJECT	NS=2;DP=308;DPB=355.0;AC=2;AN=4;AF=0.5;RO=182;AO=172;PRO=0.0;PAO=0.0;QR=6892;QA=6503;PQR=0.0;PQA=0.0;SRF=89;SRR=93;SAF=82;SAR=90;SRP=3.2012;SAP=3.81829;AB=0.484507;ABP=3.75044;RUN=1;RPP=3.46479;RPPR=3.0103;RPL=89.0;RPR=83.0;EPP=7.10075;EPPR=3.05802;DPRA=0.0;ODDS=276.777;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.479;Dels=0.0;FS=1.3365;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0635;QD=16.72;ReadPosRankSum=-0.536;SOR=0.8275;ClippingRankSum=0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:50:1885:44:1620:-120.365,0.0,-144.251:44:47:94:50,44:1488,0,1748:1:.:1:.:.:.:-0.00997748	0/1:129.501:261:132:5007:128:4883:-368.835,0.0,-379.976:128:49:260:132,128:4703,0,4804:.:1:1:.:.:.:-0.0533013
chr17	48268223	.	A	G	13445.599999999999	REJECT	NS=2;DP=356;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=405;PRO=0.0;PAO=0.0;QR=0;QA=15485;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=226;SAR=179;SRP=0.0;SAP=14.8542;AB=0.0;ABP=0.0;RUN=1;RPP=12.924;RPPR=0.0;RPL=181.0;RPR=224.0;EPP=47.4102;EPPR=0.0;DPRA=0.0;ODDS=64.8127;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997531;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.755;SOR=1.091	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.7535:97:0:0:97:3719:-334.748,-26.2727,0.0:97:100:97:0,97:3809,291,0:1:.:1:.:.:.:-0.00997748	1/1:123.7535:308:0:0:308:11766:-1058.24,-83.3623,0.0:308:100:308:0,308:13098,906,0:.:1:1:.:.:.:-0.0533013
chr17	48269302	.	G	A	8828.635	REJECT	NS=2;DP=376;DPB=437.0;AC=3;AN=4;AF=0.75;RO=114;AO=323;PRO=0.0;PAO=0.0;QR=4309;QA=12209;PQR=0.0;PQA=0.0;SRF=54;SRR=60;SAF=168;SAR=155;SRP=3.69603;SAP=4.14646;AB=0.638095;ABP=55.1877;RUN=1;RPP=6.56667;RPPR=10.6295;RPL=173.0;RPR=150.0;EPP=9.47093;EPPR=3.0103;DPRA=0.0;ODDS=77.0752;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993808;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.278;Dels=0.0;FS=0.6965;HaplotypeScore=7.768;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.176;QD=27.06;ReadPosRankSum=0.624;SOR=0.813	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.019:119:0:0:122:4601:-414.079,-33.0474,0.0:119:100:119:0,117:4743,351,0:1:.:1:.:.:.:-0.00997748	0/1:121.019:315:114:4309:201:7608:-599.019,0.0,-302.299:201:64:315:114,201:7625,0,3877:.:1:1:.:.:.:-0.0533013
chr17	48269426	.	C	T	6494.555	REJECT	NS=2;DP=289;DPB=328.0;AC=3;AN=4;AF=0.75;RO=94;AO=234;PRO=0.0;PAO=0.0;QR=3510;QA=8869;PQR=0.0;PQA=0.0;SRF=41;SRR=53;SAF=69;SAR=165;SRP=6.33681;SAP=88.5329;AB=0.625498;ABP=37.3472;RUN=1;RPP=45.9201;RPPR=16.3163;RPL=151.0;RPR=83.0;EPP=3.34437;EPPR=14.1911;DPRA=0.0;ODDS=49.0087;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995726;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.259;Dels=0.0;FS=6.9875;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.012;QD=29.265;ReadPosRankSum=-1.946;SOR=1.6895	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:75:0:0:77:2879:-259.233,-20.8583,0.0:75:100:75:0,74:3062,222,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:250:94:3510:157:5990:-470.863,0.0,-247.782:156:62:250:94,156:5905,0,3162:.:1:1:.:.:.:-0.0533013
chr17	48273464	.	T	C	2538.935	REJECT	NS=2;DP=180;DPB=213.0;AC=2;AN=4;AF=0.5;RO=113;AO=99;PRO=0.0;PAO=0.0;QR=4336;QA=3800;PQR=0.0;PQA=0.0;SRF=65;SRR=48;SAF=59;SAR=40;SRP=8.56389;SAP=10.9285;AB=0.464789;ABP=5.30411;RUN=1;RPP=51.4626;RPPR=49.1493;RPL=26.0;RPR=73.0;EPP=3.03223;EPPR=6.2579;DPRA=0.0;ODDS=196.523;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.229;Dels=0.0;FS=1.7125;HaplotypeScore=5.8371;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.347;QD=17.52;ReadPosRankSum=-0.501;SOR=0.911;ClippingRankSum=1.951	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:64:30:1166:34:1305:-100.183,0.0,-87.6599:34:53:63:29,34:1237,0,1075:1:.:1:.:.:.:-0.00997748	0/1:129.501:148:83:3170:65:2495:-184.4,0.0,-245.142:65:44:148:83,65:2374,0,3104:.:1:1:.:.:.:-0.0533013
chr17	48276971	.	G	C	10505.2	REJECT	NS=2;DP=391;DPB=454.0;AC=2;AN=4;AF=0.5;RO=105;AO=349;PRO=0.0;PAO=0.0;QR=3992;QA=13156;PQR=0.0;PQA=0.0;SRF=52;SRR=53;SAF=164;SAR=185;SRP=3.03098;SAP=5.75419;AB=0.768722;ABP=287.77;RUN=1;RPP=32.6332;RPPR=4.02365;RPL=209.0;RPR=140.0;EPP=6.30173;EPPR=3.03098;DPRA=0.0;ODDS=119.794;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994269;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.332;Dels=0.0;FS=1.034;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3655;QD=25.375;ReadPosRankSum=1.025;SOR=0.738;ClippingRankSum=-0.302	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.124:123:63:2427:62:2373:-179.676,0.0,-184.548:61:50:123:61,61:2126,0,2157:1:.:1:.:.:.:-0.00997748	0/1:118.124:329:42:1565:287:10783:-880.827,0.0,-52.1126:287:87:329:42,287:11068,0,764:.:1:1:.:.:.:-0.0533013
chr17	56432362	.	C	G	1748.555	REJECT	NS=2;DP=286;DPB=329.0;AC=2;AN=4;AF=0.5;RO=238;AO=91;PRO=0.0;PAO=0.0;QR=9026;QA=3461;PQR=0.0;PQA=0.0;SRF=86;SRR=152;SAF=37;SAR=54;SRP=42.7537;SAP=9.90651;AB=0.276596;ABP=145.634;RUN=1;RPP=11.6246;RPPR=73.6653;RPL=55.0;RPR=36.0;EPP=4.17955;EPPR=3.15628;DPRA=0.0;ODDS=233.636;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.754;Dels=0.0;FS=1.4505;HaplotypeScore=5.877;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0825;QD=10.195;ReadPosRankSum=-0.2385;SOR=0.543;ClippingRankSum=0.84	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.4215:85:44:1674:42:1583:-119.194,0.0,-127.429:41:48:85:44,41:1292,0,1468:1:.:1:.:.:.:-0.00997748	0/1:118.4215:243:194:7352:49:1878:-103.137,0.0,-595.55:49:20:243:195,49:1374,0,7500:.:1:1:.:.:.:-0.0533013
chr17	56436211	.	T	A	3426.11	REJECT	NS=2;DP=218;DPB=253.0;AC=2;AN=4;AF=0.5;RO=129;AO=124;PRO=0.0;PAO=0.0;QR=4896;QA=4718;PQR=0.0;PQA=0.0;SRF=46;SRR=83;SAF=44;SAR=80;SRP=26.0548;SAP=25.7057;AB=0.490119;ABP=3.22487;RUN=1;RPP=54.0749;RPPR=31.3068;RPL=89.0;RPR=35.0;EPP=4.76149;EPPR=3.02713;DPRA=0.0;ODDS=175.553;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984496;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5885;Dels=0.0;FS=3.0295;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.758;QD=16.41;ReadPosRankSum=0.063;SOR=0.9185;ClippingRankSum=-0.012	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.5295:70:40:1529:31:1106:-80.3566,0.0,-118.469:31:44:70:39,31:1004,0,1435:1:.:1:.:.:.:-0.00997748	0/1:121.5295:182:89:3367:93:3612:-275.686,0.0,-253.6:93:51:182:89,93:3520,0,3174:.:1:1:.:.:.:-0.0533013
chr17	56438301	.	G	A	3981.52	REJECT	NS=2;DP=300;DPB=343.0;AC=2;AN=4;AF=0.5;RO=196;AO=147;PRO=0.0;PAO=0.0;QR=7457;QA=5646;PQR=0.0;PQA=0.0;SRF=56;SRR=140;SAF=34;SAR=113;SRP=81.1833;SAP=95.2019;AB=0.428571;ABP=18.2106;RUN=1;RPP=17.2061;RPPR=24.4591;RPL=89.0;RPR=58.0;EPP=3.02507;EPPR=5.84651;DPRA=0.0;ODDS=219.899;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994898;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.591;Dels=0.0;FS=5.681;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1555;QD=14.69;ReadPosRankSum=-0.0185;SOR=0.83;ClippingRankSum=0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.273:84:50:1890:35:1347:-98.2418,0.0,-147.114:34:41:84:49,34:1184,0,1825:1:.:1:.:.:.:-0.00997748	0/1:129.273:258:146:5567:112:4299:-316.831,0.0,-430.888:112:43:258:146,112:4059,0,5437:.:1:1:.:.:.:-0.0533013
chr17	56448297	.	C	T	2441.95	PASS	SOMATIC;NS=2;DP=338;DPB=338.0;AC=1;AN=3;AF=0.25;RO=245;AO=93;PRO=0.0;PAO=0.0;QR=9115;QA=3548;PQR=0.0;PQA=0.0;SRF=150;SRR=95;SAF=55;SAR=38;SRP=29.8213;SAP=9.75821;AB=0.367589;ABP=41.5389;RUN=1;RPP=3.22044;RPPR=3.01916;RPL=45.0;RPR=48.0;EPP=9.75821;EPPR=8.54977;DPRA=2.97647;ODDS=53.0343;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989247;PAIREDR=0.995918;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.523;Dels=0.0;FS=0.0;HaplotypeScore=13.5796;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.104;QD=12.41;ReadPosRankSum=0.802;SOR=0.661	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:83:85:3148:0:0:0.0,-22.6065,-282.987:0:0:83:81,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:253:160:5967:93:3548:-250.684,0.0,-468.246:92:36:253:159,90:38.0:0.363:2:3194,0,5988:.:1:1:.:.:1:-0.0533013
chr17	56492800	.	T	C	3125.05	PASS	SOMATIC;NS=2;DP=429;DPB=429.0;AC=1;AN=3;AF=0.25;RO=313;AO=116;PRO=0.0;PAO=0.0;QR=12045;QA=4508;PQR=0.0;PQA=0.0;SRF=130;SRR=183;SAF=56;SAR=60;SRP=22.4981;SAP=3.30981;AB=0.363636;ABP=54.5334;RUN=1;RPP=15.6647;RPPR=27.1601;RPL=71.0;RPR=45.0;EPP=3.08518;EPPR=5.01527;DPRA=2.9;ODDS=69.6542;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.98722;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.268;Dels=0.0;FS=3.864;HaplotypeScore=6.8558;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.414;QD=12.86;ReadPosRankSum=0.729;SOR=0.491	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.754:106:110:4251:0:0:0.0,-29.8245,-382.619:0:0:106:103,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:118.877:318:203:7794:116:4508:-319.076,0.0,-614.612:116:36:318:193,112:38.0:0.372:2:4119,0,7690:.:1:1:.:.:1:-0.0533013
chr17	56769979	.	C	T	956.133	REJECT	NS=2;DP=208;DPB=240.0;AC=2;AN=4;AF=0.5;RO=189;AO=50;PRO=0.0;PAO=0.0;QR=7191;QA=1903;PQR=0.0;PQA=0.0;SRF=119;SRR=70;SAF=32;SAR=18;SRP=30.596;SAP=11.5225;AB=0.208333;ABP=180.347;RUN=1;RPP=47.4821;RPPR=115.617;RPL=9.0;RPR=41.0;EPP=5.78978;EPPR=7.15793;DPRA=0.0;ODDS=41.5342;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989418;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0425;Dels=0.0;FS=0.972;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2325;QD=9.705;ReadPosRankSum=-0.2465;SOR=0.924;ClippingRankSum=-1.53	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4245:61:32:1211:30:1144:-86.2312,0.0,-92.265:30:49:61:30,30:1106,0,1073:1:.:1:.:.:.:-0.00997748	0/1:119.4245:176:157:5980:20:759:-20.354,0.0,-490.073:20:11:176:156,20:334,0,6104:.:1:1:.:.:.:-0.0533013
chr17	59760996	.	A	G	13648.3	REJECT	NS=2;DP=362;DPB=417.0;AC=4;AN=4;AF=1.0;RO=0;AO=417;PRO=0.0;PAO=0.0;QR=0;QA=15852;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=202;SRP=0.0;SAP=3.89035;AB=0.0;ABP=0.0;RUN=1;RPP=3.05717;RPPR=0.0;RPL=210.0;RPR=207.0;EPP=3.01551;EPPR=0.0;DPRA=0.0;ODDS=72.8313;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992806;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.565;SOR=0.789	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:110:4136:-372.194,-29.7552,0.0:109:100:109:0,108:4314,323,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:307:0:0:307:11716:-1053.81,-83.1311,0.0:307:100:307:0,307:13108,912,0:.:1:1:.:.:.:-0.0533013
chr17	59763114	.	A	T	2685.4700000000003	REJECT	NS=2;DP=217;DPB=245.0;AC=2;AN=4;AF=0.5;RO=141;AO=103;PRO=0.0;PAO=0.0;QR=5372;QA=3965;PQR=0.0;PQA=0.0;SRF=108;SRR=33;SAF=73;SAR=30;SRP=89.6382;SAP=41.9914;AB=0.420408;ABP=16.4912;RUN=1;RPP=20.7405;RPPR=21.8759;RPL=37.0;RPR=66.0;EPP=5.56125;EPPR=3.76493;DPRA=0.0;ODDS=157.753;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.8156;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5945;Dels=0.0;FS=2.863;HaplotypeScore=10.6983;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.4805;QD=16.615;ReadPosRankSum=-0.0785;SOR=0.4005;ClippingRankSum=1.378	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:55:26:961:30:1139:-87.4417,0.0,-71.3925:30:54:55:25,30:1105,0,848:1:.:1:.:.:.:-0.00997748	0/1:129.501:189:115:4411:73:2826:-203.304,0.0,-344.902:73:39:188:115,73:2608,0,4350:.:1:1:.:.:.:-0.0533013
chr17	59763347	.	A	G	14914.65	REJECT	NS=2;DP=400;DPB=456.0;AC=4;AN=4;AF=1.0;RO=0;AO=455;PRO=0.0;PAO=0.0;QR=0;QA=17128;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=235;SRP=0.0;SAP=4.0841;AB=0.0;ABP=0.0;RUN=1;RPP=3.12961;RPPR=0.0;RPL=225.0;RPR=230.0;EPP=5.11496;EPPR=0.0;DPRA=0.0;ODDS=71.0043;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.986813;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.681;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.41;SOR=0.7455	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.451:105:0:0:107:3997:-359.736,-28.9617,0.0:104:100:104:0,102:4091,305,0:1:.:1:.:.:.:-0.00997748	1/1:125.451:346:0:0:348:13131:-1181.02,-94.1985,0.0:346:100:346:0,345:14496,1014,0:.:1:1:.:.:.:-0.0533013
chr17	59763465	.	T	C	11896.5	REJECT	NS=2;DP=315;DPB=354.0;AC=4;AN=4;AF=1.0;RO=0;AO=354;PRO=0.0;PAO=0.0;QR=0;QA=13477;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=147;SAR=207;SRP=0.0;SAP=25.0931;AB=0.0;ABP=0.0;RUN=1;RPP=15.9901;RPPR=0.0;RPL=154.0;RPR=200.0;EPP=6.54354;EPPR=0.0;DPRA=0.0;ODDS=51.7333;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988701;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8659;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.995;SOR=1.0915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.1:76:0:0:76:2870:-258.42,-20.5924,0.0:76:100:76:0,76:3139,228,0:1:.:1:.:.:.:-0.00997748	1/1:124.1:277:0:0:278:10607:-954.078,-75.2752,0.0:277:100:277:0,276:11776,819,0:.:1:1:.:.:.:-0.0533013
chr17	59924512	.	C	T	2427.31	PASS	SOMATIC;NS=2;DP=407;DPB=407.0;AC=1;AN=3;AF=0.25;RO=309;AO=98;PRO=0.0;PAO=0.0;QR=11748;QA=3695;PQR=0.0;PQA=0.0;SRF=177;SRR=132;SAF=54;SAR=44;SRP=17.2408;SAP=5.22609;AB=0.316129;ABP=94.044;RUN=1;RPP=4.4284;RPPR=3.86062;RPL=53.0;RPR=45.0;EPP=4.4284;EPPR=17.2408;DPRA=3.19588;ODDS=60.5078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987055;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.693;Dels=0.0;FS=1.476;HaplotypeScore=4.8981;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.965;QD=10.27;ReadPosRankSum=-0.444;SOR=0.595	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.421:91:97:3545:0:0:0.0,-25.8522,-318.681:0:0:91:86,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.7105:308:212:8203:98:3695:-248.392,0.0,-653.862:98:32:308:200,94:37.0:0.324:2:3190,0,8181:.:1:1:.:.:1:-0.0533013
chr17	61502459	.	TTTGTATCTGCTG	T	5437.22	REJECT	NS=2;DP=331;DPB=206.786;AC=3;AN=4;AF=0.5;RO=137;AO=216;PRO=69.0;PAO=5.0;QR=5194;QA=7380;PQR=2453.5;PQA=95.5;SRF=81;SRR=56;SAF=117;SAR=99;SRP=12.9167;SAP=6.26751;AB=0.610169;ABP=40.3302;RUN=1;RPP=4.45795;RPPR=3.02615;RPL=102.0;RPR=114.0;EPP=12.0581;EPPR=6.57659;DPRA=0.0;ODDS=71.0127;GTI=0;TYPE=del;CIGAR=1M12D1M;NUMALT=1;MEANALT=1.5;LEN=12;MQM=60.3704;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992701;technology.ILLUMINA=1.0;MQ0=0;END=61502471;HOMLEN=8;HOMSEQ=TTGTATCT;SVLEN=-12;SVTYPE=DEL;BaseQRankSum=2.216;FS=1.3215;MLEAC=1;MLEAF=0.75;MQ=60.305;MQRankSum=-0.433;QD=23.64;ReadPosRankSum=3.405;SOR=0.6135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:77:2557:-204.772,0.0,-31.2664:100:100:100:0,114:4440,302,0:1:.:1:1:.:.:-0.00997748	0/1:129.501:292:137:5194:139:4823:-346.42,0.0,-535.401:139:50:278:96,183:19121,0,18418:.:1:1:1:.:.:-0.0533013
chr17	62007498	.	A	G	9237.71	REJECT	NS=2;DP=356;DPB=409.0;AC=2;AN=4;AF=0.5;RO=107;AO=302;PRO=0.0;PAO=0.0;QR=3998;QA=11618;PQR=0.0;PQA=0.0;SRF=69;SRR=38;SAF=173;SAR=129;SRP=22.513;SAP=16.9307;AB=0.738386;ABP=204.894;RUN=1;RPP=7.15192;RPPR=5.46589;RPL=139.0;RPR=163.0;EPP=27.1985;EPPR=3.51765;DPRA=0.0;ODDS=191.64;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.1395;Dels=0.0;FS=6.014;HaplotypeScore=11.7307;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0395;QD=24.42;ReadPosRankSum=1.2615;SOR=0.73;ClippingRankSum=1.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:57:2136:49:1914:-143.542,0.0,-163.539:49:46:105:55,49:1704,0,1829:1:.:1:.:.:.:-0.00997748	0/1:129.501:303:50:1862:253:9704:-790.777,0.0,-85.4597:253:83:303:50,253:9946,0,1169:.:1:1:.:.:.:-0.0533013
chr17	63532517	.	G	A	5910.4400000000005	REJECT	NS=2;DP=381;DPB=436.0;AC=2;AN=4;AF=0.5;RO=223;AO=213;PRO=0.0;PAO=0.0;QR=8639;QA=8103;PQR=0.0;PQA=0.0;SRF=119;SRR=104;SAF=106;SAR=107;SRP=5.20125;SAP=3.02049;AB=0.488532;ABP=3.50834;RUN=1;RPP=3.50984;RPPR=6.52555;RPL=110.0;RPR=103.0;EPP=3.02049;EPPR=3.48744;DPRA=0.0;ODDS=352.183;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995305;PAIREDR=0.991031;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6245;Dels=0.0;FS=1.852;HaplotypeScore=5.9234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.581;QD=17.65;ReadPosRankSum=0.159;SOR=0.6215;ClippingRankSum=-2.305	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2035:105:54:2032:54:2045:-154.819,0.0,-153.628:52:50:105:52,51:1845,0,1798:1:.:1:.:.:.:-0.00997748	0/1:119.2035:327:169:6607:159:6058:-456.032,0.0,-505.417:159:48:327:168,159:5802,0,6393:.:1:1:.:.:.:-0.0533013
chr17	63533768	.	G	A	5434.015	REJECT	NS=2;DP=328;DPB=374.0;AC=2;AN=4;AF=0.5;RO=179;AO=195;PRO=0.0;PAO=0.0;QR=6902;QA=7368;PQR=0.0;PQA=0.0;SRF=79;SRR=100;SAF=91;SAR=104;SRP=8.36013;SAP=4.89224;AB=0.52139;ABP=4.49666;RUN=1;RPP=3.55595;RPPR=3.02243;RPL=94.0;RPR=101.0;EPP=4.89224;EPPR=5.7398;DPRA=0.0;ODDS=295.547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8495;Dels=0.0;FS=0.612;HaplotypeScore=5.998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4695;QD=18.505;ReadPosRankSum=-0.985;SOR=0.6595;ClippingRankSum=0.528	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.442:92:44:1711:48:1814:-138.356,0.0,-129.112:48:52:92:44,48:1699,0,1563:1:.:1:.:.:.:-0.00997748	0/1:124.442:282:135:5191:147:5554:-423.232,0.0,-390.565:147:52:282:135,147:5345,0,4965:.:1:1:.:.:.:-0.0533013
chr17	63533789	.	T	C	11612.95	REJECT	NS=2;DP=308;DPB=352.0;AC=4;AN=4;AF=1.0;RO=0;AO=352;PRO=0.0;PAO=0.0;QR=0;QA=13337;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=166;SAR=186;SRP=0.0;SAP=5.47788;AB=0.0;ABP=0.0;RUN=1;RPP=3.89863;RPPR=0.0;RPL=170.0;RPR=182.0;EPP=4.58955;EPPR=0.0;DPRA=0.0;ODDS=58.5657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.465;SOR=0.7895	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.0305:87:0:0:87:3244:-292.045,-23.5597,0.0:87:100:87:0,87:3729,261,0:1:.:1:.:.:.:-0.00997748	1/1:125.0305:265:0:0:265:10093:-907.87,-71.7563,0.0:265:100:265:0,265:11301,789,0:.:1:1:.:.:.:-0.0533013
chr17	63534221	.	C	T	924.681	REJECT	NS=2;DP=169;DPB=194.0;AC=2;AN=4;AF=0.5;RO=149;AO=45;PRO=0.0;PAO=0.0;QR=5671;QA=1758;PQR=0.0;PQA=0.0;SRF=113;SRR=36;SAF=38;SAR=7;SRP=89.4174;SAP=49.3833;AB=0.231959;ABP=124.075;RUN=1;RPP=6.91895;RPPR=25.1768;RPL=18.0;RPR=27.0;EPP=3.44459;EPPR=4.77371;DPRA=0.0;ODDS=70.5303;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.973154;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5385;Dels=0.0;FS=4.9875;HaplotypeScore=7.8592;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2565;QD=11.3;ReadPosRankSum=0.6845;SOR=1.55;ClippingRankSum=-0.557	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:46:23:885:24:946:-72.4955,0.0,-67.0043:24:52:46:21,24:925,0,705:1:.:1:.:.:.:-0.00997748	0/1:129.501:146:126:4786:21:812:-33.2357,0.0,-390.834:21:14:146:124,21:479,0,4853:.:1:1:.:.:.:-0.0533013
chr17	63534250	.	T	C	8332.135	REJECT	NS=2;DP=225;DPB=262.0;AC=4;AN=4;AF=1.0;RO=0;AO=262;PRO=0.0;PAO=0.0;QR=0;QA=9893;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=184;SAR=78;SRP=0.0;SAP=96.135;AB=0.0;ABP=0.0;RUN=1;RPP=43.6218;RPPR=0.0;RPL=96.0;RPR=166.0;EPP=3.83911;EPPR=0.0;DPRA=0.0;ODDS=48.3173;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.980916;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8463;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.68;SOR=1.779	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:69:0:0:72:2681:-241.017,-19.1089,0.0:69:100:69:0,67:2794,202,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:189:0:0:190:7212:-648.779,-51.42,0.0:189:100:189:0,188:7971,554,0:.:1:1:.:.:.:-0.0533013
chr17	63545622	.	T	C	3573.04	REJECT	NS=2;DP=201;DPB=228.0;AC=2;AN=4;AF=0.5;RO=102;AO=126;PRO=0.0;PAO=0.0;QR=3976;QA=4808;PQR=0.0;PQA=0.0;SRF=76;SRR=26;SAF=86;SAR=40;SRP=56.2327;SAP=39.4772;AB=0.552632;ABP=8.49612;RUN=1;RPP=33.4109;RPPR=22.1704;RPL=42.0;RPR=84.0;EPP=3.63072;EPPR=3.7767;DPRA=0.0;ODDS=143.352;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2675;Dels=0.0;FS=5.695;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1395;QD=20.13;ReadPosRankSum=-0.0675;SOR=0.7705;ClippingRankSum=-0.46	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:53:22:860:31:1127:-87.1692,0.0,-63.1317:31:58:53:22,31:1083,0,807:1:.:1:.:.:.:-0.00997748	0/1:129.501:175:80:3116:95:3681:-283.746,0.0,-232.929:95:54:175:80,95:3591,0,2974:.:1:1:.:.:.:-0.0533013
chr17	63554591	.	G	A	5181.14	REJECT	NS=2;DP=318;DPB=354.0;AC=2;AN=4;AF=0.5;RO=171;AO=183;PRO=0.0;PAO=0.0;QR=6424;QA=7017;PQR=0.0;PQA=0.0;SRF=82;SRR=89;SAF=93;SAR=90;SRP=3.63253;SAP=3.11709;AB=0.516949;ABP=3.89361;RUN=1;RPP=3.02217;RPPR=5.15638;RPL=91.0;RPR=92.0;EPP=3.30695;EPPR=5.15638;DPRA=0.0;ODDS=154.381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9345;Dels=0.0;FS=1.606;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3085;QD=20.215;ReadPosRankSum=0.7855;SOR=0.7645;ClippingRankSum=-0.185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.537:71:26:967:45:1717:-135.381,0.0,-67.8382:45:63:71:26,45:1623,0,868:1:.:1:.:.:.:-0.00997748	0/1:120.537:282:145:5457:138:5300:-400.102,0.0,-414.224:138:49:282:144,138:5096,0,5190:.:1:1:.:.:.:-0.0533013
chr17	64550701	.	AGGTG	A	3855.98	REJECT	NS=2;DP=307;DPB=293.1;AC=2;AN=4;AF=0.5;RO=169;AO=152;PRO=40.0;PAO=24.0;QR=6380;QA=5457;PQR=1380.5;PQA=804.5;SRF=52;SRR=117;SAF=49;SAR=103;SRP=57.2971;SAP=44.6683;AB=0.470588;ABP=5.43724;RUN=1;RPP=35.9253;RPPR=54.0078;RPL=100.0;RPR=52.0;EPP=9.92473;EPPR=4.05106;DPRA=0.0;ODDS=175.539;GTI=0;TYPE=del;CIGAR=1M4D5M;NUMALT=1;MEANALT=2.0;LEN=4;MQM=60.1974;MQMR=60.0;PAIRED=0.960526;PAIREDR=0.982249;technology.ILLUMINA=1.0;MQ0=0;END=64550705;HOMLEN=4;HOMSEQ=GGTG;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=1.117;FS=7.631;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.4485;QD=16.285;RPA=2,1;RU=GGTG;ReadPosRankSum=1.2955;SOR=1.106;STR;ClippingRankSum=0.155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:45:1689:31:1119:-79.0781,0.0,-143.82:31:41:76:34,29:1193,0,2443:1:.:1:1:.:.:-0.00997748	0/1:129.501:269:124:4691:121:4338:-320.634,0.0,-390.9:121:49:245:99,133:7397,0,8209:.:1:1:1:.:.:-0.0533013
chr17	64685078	.	G	A	8022.780000000001	REJECT	NS=2;DP=333;DPB=390.0;AC=3;AN=4;AF=0.75;RO=98;AO=292;PRO=0.0;PAO=0.0;QR=3712;QA=11200;PQR=0.0;PQA=0.0;SRF=56;SRR=42;SAF=173;SAR=119;SRP=7.35324;SAP=24.6953;AB=0.646209;ABP=54.4436;RUN=1;RPP=8.84055;RPPR=3.80798;RPL=132.0;RPR=160.0;EPP=4.46786;EPPR=5.22609;DPRA=0.0;ODDS=71.4998;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989726;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.227;Dels=0.0;FS=0.232;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.549;QD=26.675;ReadPosRankSum=-0.116;SOR=0.9845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:113:4321:-388.906,-30.626,0.0:111:100:111:0,110:4554,331,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:276:98:3712:179:6879:-543.743,0.0,-258.879:178:64:276:98,178:6835,0,3319:.:1:1:.:.:.:-0.0533013
chr17	64685390	.	G	C	16464.25	REJECT	NS=2;DP=434;DPB=509.0;AC=4;AN=4;AF=1.0;RO=0;AO=507;PRO=0.0;PAO=0.0;QR=0;QA=19555;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=271;SAR=236;SRP=0.0;SAP=8.25695;AB=0.0;ABP=0.0;RUN=1;RPP=3.04885;RPPR=0.0;RPL=255.0;RPR=252.0;EPP=5.276;EPPR=0.0;DPRA=0.0;ODDS=96.0225;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990138;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.84;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.065;SOR=0.8145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:146:0:0:147:5658:-509.105,-39.827,0.0:146:100:146:0,145:6012,436,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:360:0:0:360:13897:-1249.87,-97.49,0.0:358:100:358:0,357:15418,1063,0:.:1:1:.:.:.:-0.0533013
chr17	64686048	.	G	A	15513.8	REJECT	NS=2;DP=415;DPB=478.0;AC=4;AN=4;AF=1.0;RO=0;AO=477;PRO=0.0;PAO=0.0;QR=0;QA=17977;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=244;SRP=0.0;SAP=3.56113;AB=0.0;ABP=0.0;RUN=1;RPP=7.38511;RPPR=0.0;RPL=223.0;RPR=254.0;EPP=3.77965;EPPR=0.0;DPRA=0.0;ODDS=81.6706;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997904;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7563;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.61;SOR=0.7435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9665:124:0:0:124:4666:-419.938,-33.594,0.0:123:100:123:0,123:5113,369,0:1:.:1:.:.:.:-0.00997748	1/1:124.9665:353:0:0:353:13311:-1197.22,-95.5481,0.0:353:100:353:0,353:14933,1044,0:.:1:1:.:.:.:-0.0533013
chr17	64686545	.	C	T	2521.67	PASS	SOMATIC;NS=2;DP=402;DPB=402.0;AC=1;AN=3;AF=0.25;RO=304;AO=98;PRO=0.0;PAO=0.0;QR=11692;QA=3761;PQR=0.0;PQA=0.0;SRF=104;SRR=200;SAF=40;SAR=58;SRP=68.8402;SAP=10.1895;AB=0.34386;ABP=63.362;RUN=1;RPP=13.7347;RPPR=3.26745;RPL=38.0;RPR=60.0;EPP=22.9524;EPPR=3.7246;DPRA=2.4359;ODDS=73.9923;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9605;PAIRED=1.0;PAIREDR=0.996711;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.745;Dels=0.0;FS=3.587;HaplotypeScore=6.7538;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.589;QD=11.7;ReadPosRankSum=-0.679;SOR=0.468	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.758:115:117:4517:0:0:0.0,-31.7085,-406.517:0:0:115:114,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:122.879:285:187:7175:98:3761:-261.117,0.0,-568.186:98:34:285:182,94:38.0:0.34:2:3362,0,7159:.:1:1:.:.:1:-0.0533013
chr17	64686679	.	A	G	1172.59	PASS	SOMATIC;NS=2;DP=197;DPB=197.0;AC=1;AN=3;AF=0.25;RO=149;AO=48;PRO=0.0;PAO=0.0;QR=5753;QA=1861;PQR=0.0;PQA=0.0;SRF=35;SRR=114;SAF=12;SAR=36;SRP=93.9644;SAP=29.068;AB=0.315789;ABP=47.8112;RUN=1;RPP=4.6389;RPPR=8.27138;RPL=27.0;RPR=21.0;EPP=17.6677;EPPR=20.863;DPRA=3.37778;ODDS=29.1113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986577;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.39;Dels=0.0;FS=1.693;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.313;QD=10.64;ReadPosRankSum=1.125;SOR=0.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:126.04:44:45:1707:0:0:0.0,-12.2169,-153.867:0:0:44:44,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:151:104:4046:48:1861:-126.252,0.0,-322.856:48:32:151:99,45:38.0:0.304:2:1635,0,4044:.:1:1:.:.:1:-0.0533013
chr17	64686818	.	T	C	1137.005	REJECT	NS=2;DP=35;DPB=42.0;AC=4;AN=4;AF=1.0;RO=0;AO=41;PRO=0.0;PAO=0.0;QR=0;QA=1501;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=0;SAR=41;SRP=0.0;SAP=92.0407;AB=0.0;ABP=0.0;RUN=1;RPP=5.60547;RPPR=0.0;RPL=24.0;RPR=17.0;EPP=5.60547;EPPR=0.0;DPRA=0.0;ODDS=13.1179;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.655;SOR=6.0435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:49.4851:14:0:0:14:530:-48.0384,-3.82196,0.0:14:100:14:0,14:595,42,0:1:.:1:.:.:.:-0.00997748	1/1:84.95825:28:0:0:27:971:-87.6508,-7.31659,0.0:27:100:27:0,27:1092,78,0:.:1:1:.:.:.:-0.0533013
chr17	64686866	.	T	A	1072.955	REJECT	NS=2;DP=31;DPB=38.0;AC=4;AN=4;AF=1.0;RO=0;AO=38;PRO=0.0;PAO=0.0;QR=0;QA=1417;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=1;SAR=37;SRP=0.0;SAP=77.0689;AB=0.0;ABP=0.0;RUN=1;RPP=3.0103;RPPR=0.0;RPL=19.0;RPR=19.0;EPP=3.23888;EPPR=0.0;DPRA=0.0;ODDS=13.1172;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.175;SOR=5.1755	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:49.4836:14:0:0:14:521:-47.2253,-3.82166,0.0:14:100:14:0,14:588,42,0:1:.:1:.:.:.:-0.00997748	1/1:78.0262:24:0:0:24:896:-80.9517,-6.53018,0.0:24:100:24:0,24:1009,72,0:.:1:1:.:.:.:-0.0533013
chr17	64687199	.	C	T	683.157	PASS	SOMATIC;NS=2;DP=120;DPB=120.0;AC=1;AN=3;AF=0.25;RO=90;AO=30;PRO=0.0;PAO=0.0;QR=3398;QA=1149;PQR=0.0;PQA=0.0;SRF=90;SRR=0;SAF=30;SAR=0;SRP=198.443;SAP=68.1545;AB=0.361446;ABP=16.8502;RUN=1;RPP=3.29983;RPPR=19.3205;RPL=14.0;RPR=16.0;EPP=3.29983;EPPR=19.3205;DPRA=2.24324;ODDS=24.0806;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.294;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.024;QD=12.25;ReadPosRankSum=1.009;SOR=0.285	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:104.579:37:37:1386:0:0:0.0,-10.0321,-124.98:0:0:37:37,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:118.786:83:53:2012:30:1149:-80.9581,0.0,-158.641:30:36:83:53,30:38.0:0.361:2:1045,0,1997:.:1:1:.:.:1:-0.0533013
chr17	64687216	.	G	A	873.639	PASS	SOMATIC;NS=2;DP=132;DPB=132.0;AC=1;AN=3;AF=0.25;RO=94;AO=38;PRO=0.0;PAO=0.0;QR=3585;QA=1404;PQR=0.0;PQA=0.0;SRF=94;SRR=0;SAF=37;SAR=1;SRP=207.129;SAP=77.0689;AB=0.404255;ABP=10.4949;RUN=1;RPP=3.0103;RPPR=10.4949;RPL=19.0;RPR=19.0;EPP=3.23888;EPPR=10.4949;DPRA=2.47368;ODDS=24.7466;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.767;Dels=0.0;FS=3.933;HaplotypeScore=2.9457;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.189;QD=13.45;ReadPosRankSum=-1.822;SOR=0.105	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:107.47:38:38:1442:0:0:0.0,-10.3213,-130.043:0:0:38:38,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.413:94:56:2143:38:1404:-100.902,0.0,-167.471:38:40:94:56,37:37.0:0.398:2:1293,0,2133:.:1:1:.:.:1:-0.0533013
chr17	64687446	.	A	G	2607.68	PASS	SOMATIC;NS=2;DP=439;DPB=439.0;AC=1;AN=3;AF=0.25;RO=330;AO=108;PRO=0.0;PAO=0.0;QR=12205;QA=3934;PQR=0.0;PQA=0.0;SRF=202;SRR=128;SAF=68;SAR=40;SRP=39.0436;SAP=18.7736;AB=0.338558;ABP=75.2271;RUN=1;RPP=3.332;RPPR=5.64239;RPL=52.0;RPR=56.0;EPP=5.9056;EPPR=3.11558;DPRA=2.65833;ODDS=75.7896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.99697;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.413;Dels=0.0;FS=2.029;HaplotypeScore=16.489;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.354;QD=10.62;ReadPosRankSum=0.296;SOR=0.825	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.677:118:120:4461:0:0:0.0,-32.489,-401.464:0:0:118:116,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:120.8385:318:210:7744:108:3934:-267.889,0.0,-610.484:107:34:317:205,105:36.0:0.342:2:3404,0,7508:.:1:1:.:.:1:-0.0533013
chr17	64687878	.	CA	C	2943.49	PASS	SOMATIC;NS=2;DP=416;DPB=389.0;AC=1;AN=4;AF=0.25;RO=294;AO=118;PRO=19.0;PAO=9.0;QR=11191;QA=4296;PQR=434.5;PQA=93.5;SRF=147;SRR=147;SAF=61;SAR=57;SRP=3.0103;SAP=3.30474;AB=0.371069;ABP=48.9253;RUN=1;RPP=3.30474;RPPR=13.6756;RPL=57.0;RPR=61.0;EPP=3.67278;EPPR=3.12848;DPRA=3.2449;ODDS=64.62;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.339;MQMR=60.0;PAIRED=0.983051;PAIREDR=0.996599;technology.ILLUMINA=1.0;MQ0=0;END=64687879;HOMLEN=0;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=0.623;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.451;QD=13.59;ReadPosRankSum=0.148;SOR=0.73	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:100:98:3662:0:0:0.0,-27.6382,-341.441:0:0:100:102,0:0.137255,0.0:60.0,0.0:37.6976,0.0:0.00100806,0.0:0,0:0,0:48,54,0,0:.:.:.:0:.:0:.:-0.00997748	0/1:129.501:325:196:7529:118:4296:-299.753,0.0,-609.541:120:38:322:205,120:0.102439,0.1:60.0,60.5:38.5793,37.9831:0.00201511,0.000846024:52,24:47,23:103,102,62,58:4455,0,8038:.:1:1:1:1:.:-0.0533013
chr17	64688009	.	A	G	4009.28	PASS	SOMATIC;NS=2;DP=521;DPB=521.0;AC=1;AN=3;AF=0.25;RO=371;AO=150;PRO=0.0;PAO=0.0;QR=14258;QA=5747;PQR=0.0;PQA=0.0;SRF=191;SRR=180;SAF=78;SAR=72;SRP=3.71852;SAP=3.53145;AB=0.36855;ABP=64.0943;RUN=1;RPP=3.24192;RPPR=6.10655;RPL=73.0;RPR=77.0;EPP=5.09491;EPPR=3.71852;DPRA=3.57018;ODDS=72.1237;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.457;Dels=0.0;FS=0.0;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.275;QD=12.74;ReadPosRankSum=0.435;SOR=0.687	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:112:114:4371:0:0:0.0,-30.897,-393.396:0:0:112:111,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:407:257:9887:150:5747:-406.645,0.0,-778.989:150:37:407:245,145:38.0:0.374:2:5212,0,9841:.:1:1:.:.:1:-0.0533013
chr17	64688343	.	A	G	17372.199999999997	REJECT	NS=2;DP=465;DPB=524.0;AC=4;AN=4;AF=1.0;RO=0;AO=524;PRO=0.0;PAO=0.0;QR=0;QA=19762;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=229;SAR=295;SRP=0.0;SAP=21.0617;AB=0.0;ABP=0.0;RUN=1;RPP=5.81167;RPPR=0.0;RPL=249.0;RPR=275.0;EPP=4.07117;EPPR=0.0;DPRA=0.0;ODDS=77.795;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994275;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.73;SOR=1.013	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.3315:117:0:0:118:4390:-395.035,-31.9109,0.0:117:100:117:0,116:4679,347,0:1:.:1:.:.:.:-0.00997748	1/1:126.3315:406:0:0:406:15372:-1382.49,-109.877,0.0:406:100:406:0,406:17063,1186,0:.:1:1:.:.:.:-0.0533013
chr17	64688759	.	C	T	8904.385	REJECT	NS=2;DP=405;DPB=458.0;AC=3;AN=4;AF=0.75;RO=141;AO=317;PRO=0.0;PAO=0.0;QR=5318;QA=12046;PQR=0.0;PQA=0.0;SRF=66;SRR=75;SAF=174;SAR=143;SRP=4.25774;SAP=9.59322;AB=0.601695;ABP=34.8095;RUN=1;RPP=3.34595;RPPR=14.2373;RPL=155.0;RPR=162.0;EPP=3.07195;EPPR=3.0257;DPRA=0.0;ODDS=65.8877;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996845;PAIREDR=0.985816;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.509;Dels=0.0;FS=3.1755;HaplotypeScore=9.7836;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.728;QD=26.87;ReadPosRankSum=-1.551;SOR=0.8875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:104:3968:-357.171,-28.1887,0.0:103:100:103:0,102:4080,306,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:353:141:5318:213:8078:-630.747,0.0,-382.47:213:60:353:140,213:8024,0,4850:.:1:1:.:.:.:-0.0533013
chr17	64689940	.	T	C	2795.74	PASS	SOMATIC;NS=2;DP=427;DPB=427.0;AC=1;AN=3;AF=0.25;RO=320;AO=107;PRO=0.0;PAO=0.0;QR=12063;QA=4126;PQR=0.0;PQA=0.0;SRF=185;SRR=135;SAF=68;SAR=39;SRP=19.9749;SAP=20.0777;AB=0.342949;ABP=69.8527;RUN=1;RPP=3.51765;RPPR=13.8677;RPL=51.0;RPR=56.0;EPP=4.00471;EPPR=3.68889;DPRA=2.71304;ODDS=72.7178;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.582;Dels=0.0;FS=4.788;HaplotypeScore=6.789;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.005;QD=11.87;ReadPosRankSum=-0.848;SOR=0.962	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:112:115:4367:0:0:0.0,-31.155,-393.032:0:0:112:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:310:205:7696:107:4126:-286.651,0.0,-607.749:107:34:310:199,104:38.0:0.34:2:3709,0,7552:.:1:1:.:.:1:-0.0533013
chr17	64690885	.	TA	T	269.196	REJECT	NS=2;DP=86;DPB=219.091;AC=2;AN=3;AF=0.5;RO=2;AO=15;PRO=60.7952;PAO=56.2952;QR=75;QA=285;PQR=2009.47;PQA=1866.97;SRF=0;SRR=2;SAF=1;SAR=14;SRP=7.35324;SAP=27.4756;AB=0.174419;ABP=82.1933;RUN=1;RPP=4.31318;RPPR=7.35324;RPL=6.0;RPR=9.0;EPP=3.15506;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=del;CIGAR=1M1D31M;NUMALT=7;MEANALT=13.0;LEN=1;MQM=58.1333;MQMR=57.0;PAIRED=0.733333;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.4986:27:0:0:6:115:-20.0126,-11.4375,-10.1381:6:24:25:.:.:1:.:.:.:-0.00997748	0/1:97.2648:59:2:75:9:170:-17.0008,0.0,-14.0273:9:20:45:.:.:1:.:.:.:-0.0533013
chr17	64690885	.	TAA	T	269.196	REJECT	NS=2;DP=86;DPB=219.091;AC=2;AN=2;AF=0.25;RO=2;AO=18;PRO=60.7952;PAO=48.7952;QR=75;QA=378;PQR=2009.47;PQA=1564.47;SRF=0;SRR=2;SAF=0;SAR=18;SRP=7.35324;SAP=42.0968;AB=0.209302;ABP=66.1345;RUN=1;RPP=3.49285;RPPR=7.35324;RPL=8.0;RPR=10.0;EPP=3.49285;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=del;CIGAR=1M2D30M;NUMALT=7;MEANALT=13.0;LEN=2;MQM=60.2778;MQMR=57.0;PAIRED=0.944444;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.931;FS=26.892;MLEAC=1;MLEAF=0.5;MQ=56.42;MQRankSum=-0.71;QD=4.21;RPA=24,22;RU=A;ReadPosRankSum=-0.347;SOR=2.656;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.4986:27:0:0:8:166:-20.0126,-8.46394,-16.0075:8:32:25:.:.:.:.:1:.:.:.:-0.00997748	./1:98.1324:112:2:75:10:212:-17.0008,-9.94392,-113.672:26:46:53:18,43:749,0,173:.:1:1:.:.:.:-0.0533013
chr17	64690885	.	TAAA	T	269.196	REJECT	SOMATIC;NS=2;DP=86;DPB=219.091;AC=1;AN=3;AF=0.0;RO=2;AO=11;PRO=60.7952;PAO=39.7119;QR=75;QA=278;PQR=2009.47;PQA=1336.3;SRF=0;SRR=2;SAF=1;SAR=10;SRP=7.35324;SAP=19.0002;AB=0.127907;ABP=106.433;RUN=1;RPP=3.20771;RPPR=7.35324;RPL=6.0;RPR=5.0;EPP=3.20771;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=del;CIGAR=1M3D29M;NUMALT=7;MEANALT=13.0;LEN=3;MQM=59.8182;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.4986:27:0:0:4:85:-20.0126,-18.1869,-56.2422:4:16:25:.:.:.:.:.:.:-0.00997748	./1:97.2648:59:2:75:7:193:-17.0008,-26.5987,-297.857:7:16:45:.:.:1:.:.:.:-0.0533013
chr17	64690885	.	TAAAA	T	269.196	REJECT	SOMATIC;NS=2;DP=86;DPB=219.091;AC=1;AN=3;AF=0.0;RO=2;AO=11;PRO=60.7952;PAO=35.7619;QR=75;QA=213;PQR=2009.47;PQA=1161.25;SRF=0;SRR=2;SAF=1;SAR=10;SRP=7.35324;SAP=19.0002;AB=0.127907;ABP=106.433;RUN=1;RPP=7.94546;RPPR=7.35324;RPL=8.0;RPR=3.0;EPP=4.78696;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=del;CIGAR=1M4D28M;NUMALT=7;MEANALT=13.0;LEN=4;MQM=59.0909;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.4986:27:0:0:4:73:-20.0126,-29.0202,-162.925:4:16:25:.:.:.:.:.:.:-0.00997748	./1:97.2648:59:2:75:7:140:-17.0008,-40.9114,-442.887:7:16:45:.:.:1:.:.:.:-0.0533013
chr17	64690885	.	TAAAAAA	T	269.196	REJECT	SOMATIC;NS=2;DP=86;DPB=219.091;AC=1;AN=3;AF=0.0;RO=2;AO=7;PRO=60.7952;PAO=28.9286;QR=75;QA=162;PQR=2009.47;PQA=970.75;SRF=0;SRR=2;SAF=3;SAR=4;SRP=7.35324;SAP=3.32051;AB=0.0813953;ABP=133.905;RUN=1;RPP=5.80219;RPPR=7.35324;RPL=2.0;RPR=5.0;EPP=3.32051;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=del;CIGAR=1M6D26M;NUMALT=7;MEANALT=13.0;LEN=6;MQM=60.0;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.4986:27:0:0:1:34:-20.0126,-46.3563,-331.743:1:4:25:.:.:.:.:.:.:-0.00997748	./1:97.2648:59:2:75:6:128:-17.0008,-77.0446,-717.426:6:13:45:.:.:1:.:.:.:-0.0533013
chr17	64690886	.	A	T	269.196	REJECT	SOMATIC;NS=2;DP=86;DPB=219.091;AC=1;AN=3;AF=0.0;RO=2;AO=4;PRO=60.7952;PAO=24.7833;QR=75;QA=116;PQR=2009.47;PQA=845.74;SRF=0;SRR=2;SAF=3;SAR=1;SRP=7.35324;SAP=5.18177;AB=0.0677966;ABP=98.7391;RUN=1;RPP=11.6962;RPPR=7.35324;RPL=0.0;RPR=4.0;EPP=5.18177;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=snp;CIGAR=1M1X31M;NUMALT=7;MEANALT=18.0;LEN=1;MQM=59.25;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.4986:27:0:0:0:0:-20.0126,-71.632,-576.702:0:0:25:.:.:.:.:.:.:-0.00997748	./1:97.2648:59:2:75:4:116:-17.0008,-130.817,-1334.13:4:9:45:.:.:1:.:.:.:-0.0533013
chr17	64690906	.	AAAAGGTATC	GGTATT	269.196	REJECT	SOMATIC;NS=2;DP=86;DPB=219.091;AC=1;AN=3;AF=0.0;RO=2;AO=2;PRO=60.7952;PAO=13.9286;QR=75;QA=32;PQR=2009.47;PQA=429.06;SRF=0;SRR=2;SAF=2;SAR=0;SRP=7.35324;SAP=7.35324;AB=0.0740741;ABP=45.5551;RUN=1;RPP=7.35324;RPPR=7.35324;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=7.35324;DPRA=0.0;ODDS=15.5437;GTI=0;TYPE=complex;CIGAR=1M4D25M1X2M;NUMALT=7;MEANALT=8.0;LEN=29;MQM=49.0;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.4986:27:0:0:2:32:-20.0126,-107.217,-1035.87:2:8:25:.:.:.:.:.:.:-0.00997748	./1:97.2648:59:2:75:0:0:-17.0008,-239.069,-2651.83:0:0:45:.:.:1:.:.:.:-0.0533013
chr17	64691905	.	G	A	17985.8	REJECT	NS=2;DP=467;DPB=540.0;AC=4;AN=4;AF=1.0;RO=1;AO=539;PRO=0.0;PAO=0.0;QR=30;QA=20931;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=260;SAR=279;SRP=5.18177;SAP=4.46466;AB=0.0;ABP=0.0;RUN=1;RPP=6.88189;RPPR=5.18177;RPL=285.0;RPR=254.0;EPP=3.11102;EPPR=5.18177;DPRA=0.0;ODDS=90.0567;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988868;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.437;Dels=0.0;FS=0.0;HaplotypeScore=6.8983;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.012;QD=26.8;ReadPosRankSum=1.413;SOR=0.5225;ClippingRankSum=0.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:142:1:30:143:5553:-496.979,-36.333,0.0:141:99:142:1,140:5907,390,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:395:0:0:396:15378:-1383.03,-107.255,0.0:395:100:395:0,395:17240,1183,0:.:1:1:.:.:.:-0.0533013
chr17	64692964	.	C	T	3441.17	PASS	SOMATIC;NS=2;DP=490;DPB=490.0;AC=1;AN=3;AF=0.25;RO=360;AO=130;PRO=0.0;PAO=0.0;QR=13930;QA=4955;PQR=0.0;PQA=0.0;SRF=174;SRR=186;SAF=59;SAR=71;SRP=3.87889;SAP=5.41562;AB=0.367232;ABP=57.2112;RUN=1;RPP=3.61163;RPPR=5.42305;RPL=62.0;RPR=68.0;EPP=3.27756;EPPR=4.55446;DPRA=2.60294;ODDS=85.8721;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.812;Dels=0.0;FS=1.3;HaplotypeScore=6.8703;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.18;QD=12.49;ReadPosRankSum=1.198;SOR=0.772	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:133:136:5282:0:0:0.0,-36.8678,-475.318:0:0:133:130,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:354:224:8648:130:4955:-349.785,0.0,-681.945:130:37:354:218,124:38.0:0.358:2:4448,0,8610:.:1:1:.:.:1:-0.0533013
chr17	64694935	.	T	A	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=2;AF=0.0;RO=17;AO=3;PRO=19.3929;PAO=4.97619;QR=621;QA=48;PQR=683.381;PQA=130.381;SRF=2;SRR=15;SAF=0;SAR=3;SRP=24.5973;SAP=9.52472;AB=0.0666667;ABP=76.4061;RUN=1;RPP=9.52472;RPPR=9.26925;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=snp;CIGAR=1X26M;NUMALT=6;MEANALT=16.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.2074:26:7:254:0:0:-5.48841,-17.436,-141.28:0:0:20:.:.:1:.:.:.:-0.00997748	./1:3.13729:45:10:367:3:48:-1.72541,-18.3935,-291.127:3:10:31:.:.:1:.:.:.:-0.0533013
chr17	64694935	.	TAC	AAA	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=2;AF=0.0;RO=17;AO=6;PRO=19.3929;PAO=3.47619;QR=621;QA=120;PQR=683.381;PQA=93.381;SRF=2;SRR=15;SAF=0;SAR=6;SRP=24.5973;SAP=16.0391;AB=0.084507;ABP=109.474;RUN=1;RPP=4.45795;RPPR=9.26925;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=complex;CIGAR=1X1M1X24M;NUMALT=6;MEANALT=13.5;LEN=27;MQM=58.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.2074:26:7:254:1:14:-5.48841,-16.9874,-146.887:1:5:20:.:.:1:.:.:.:-0.00997748	./1:3.13729:45:10:367:5:106:-1.72541,-15.059,-287.512:5:16:31:.:.:1:.:.:.:-0.0533013
chr17	64694935	.	TACA	AAC	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=2;AF=0.0;RO=17;AO=5;PRO=19.3929;PAO=2.47619;QR=621;QA=92;PQR=683.381;PQA=79.381;SRF=2;SRR=15;SAF=0;SAR=5;SRP=24.5973;SAP=13.8677;AB=0.0704225;ABP=116.814;RUN=1;RPP=3.44459;RPPR=9.26925;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=complex;CIGAR=1X2M1D23M;NUMALT=6;MEANALT=13.5;LEN=26;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.2074:26:7:254:2:28:-5.48841,-15.9953,-145.639:2:10:20:.:.:1:.:.:.:-0.00997748	./1:3.13729:45:10:367:3:64:-1.72541,-19.2916,-292.536:3:10:31:.:.:1:.:.:.:-0.0533013
chr17	64694937	.	C	A	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=2;AF=0.0;RO=17;AO=6;PRO=19.3929;PAO=5.39286;QR=621;QA=97;PQR=683.381;PQA=146.214;SRF=2;SRR=15;SAF=0;SAR=6;SRP=24.5973;SAP=16.0391;AB=0.084507;ABP=109.474;RUN=1;RPP=4.45795;RPPR=9.26925;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=snp;CIGAR=2M1X24M;NUMALT=6;MEANALT=13.5;LEN=1;MQM=56.6667;MQMR=60.0;PAIRED=0.833333;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=-0.225;Dels=0.02;FS=10.603;HaplotypeScore=62.8073;MLEAC=1;MLEAF=0.5;MQ=58.5;MQRankSum=-0.494;QD=1.45;ReadPosRankSum=2.073;SOR=3.142	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.2074:26:7:254:2:28:-5.48841,-13.8225,-120.735:2:10:20:.:.:.:.:1:.:.:.:-0.00997748	./1:51.068645:62:10:367:4:69:-1.72541,-16.8684,-255.546:9:15:55:65,14:146,0,1553:.:1:1:.:.:.:-0.0533013
chr17	64694937	.	C	CA	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=2;AF=0.0;RO=17;AO=5;PRO=19.3929;PAO=17.8929;QR=621;QA=86;PQR=683.381;PQA=630.381;SRF=2;SRR=15;SAF=0;SAR=5;SRP=24.5973;SAP=13.8677;AB=0.0704225;ABP=116.814;RUN=1;RPP=3.44459;RPPR=9.26925;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=ins;CIGAR=3M1I24M;NUMALT=6;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;ALERT;BaseQRankSum=1.85;FS=14.916;MLEAC=1;MLEAF=0.5;MQ=58.5;MQRankSum=-0.91;QD=0.79;RPA=17,18;RU=A;ReadPosRankSum=-0.822;SOR=0.016;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:26.2074:26:7:254:3:58:-5.48841,-3.51317,-30.0557:3:15:20:.:.:.:.:1:.:.:.:-0.00997748	./1:51.068645:62:10:367:2:28:-1.72541,-0.117227,-35.3521:9:19:41:34,17:101,0,361:.:1:1:.:.:.:-0.0533013
chr17	64694937	.	CA	C	26.5478	REJECT	NS=2;DP=71;DPB=98.2963;AC=2;AN=4;AF=0.5;RO=17;AO=9;PRO=19.3929;PAO=13.3929;QR=621;QA=214;PQR=683.381;PQA=441.881;SRF=2;SRR=15;SAF=3;SAR=6;SRP=24.5973;SAP=5.18177;AB=0.126761;ABP=88.9211;RUN=1;RPP=3.25157;RPPR=9.26925;RPL=4.0;RPR=5.0;EPP=9.04217;EPPR=9.26925;DPRA=0.0;ODDS=0.216742;GTI=0;TYPE=del;CIGAR=3M1D23M;NUMALT=6;MEANALT=13.5;LEN=1;MQM=58.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=0.941176;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.933;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.644;QD=3.87;ReadPosRankSum=0.489;SOR=0.941;ClippingRankSum=0.4	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:62.6037:24:7:254:5:109:-5.48841,0.0,-32.5066:7:35:21:12,10:161,0,158:1:.:1:.:.:.:-0.00997748	0/1:3.13729:45:10:367:4:105:-1.72541,0.0,-83.305:4:13:31:.:.:.:.:1:.:.:.:-0.0533013
chr17	64695287	.	C	T	454.975	PASS	SOMATIC;NS=2;DP=85;DPB=85.0;AC=1;AN=3;AF=0.25;RO=62;AO=21;PRO=0.0;PAO=0.0;QR=1954;QA=725;PQR=0.0;PQA=0.0;SRF=30;SRR=32;SAF=8;SAR=13;SRP=3.15039;SAP=5.59539;AB=0.375;ABP=10.6105;RUN=1;RPP=3.1137;RPPR=19.9618;RPL=11.0;RPR=10.0;EPP=11.386;EPPR=9.87495;DPRA=1.93103;ODDS=18.969;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=59.871;PAIRED=0.904762;PAIREDR=0.967742;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.038;Dels=0.0;FS=0.0;HaplotypeScore=10.6648;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.266;QD=10.33;ReadPosRankSum=-1.862;SOR=0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:82.3814:29:29:881:0:0:0.0,-7.81217,-79.4742:0:0:29:29,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:125.4745:54:33:1073:21:725:-50.7469,0.0,-82.0611:19:37:52:32,17:36.0:0.333:2:586,0,970:.:1:1:.:.:1:-0.0533013
chr17	64695328	.	CA	C	140.506	REJECT	NS=2;DP=49;DPB=100.189;AC=2;AN=3;AF=0.25;RO=3;AO=5;PRO=37.9833;PAO=23.9833;QR=112;QA=130;PQR=1351.93;PQA=832.933;SRF=0;SRR=3;SAF=2;SAR=3;SRP=9.52472;SAP=3.44459;AB=0.102041;ABP=70.4146;RUN=1;RPP=3.44459;RPPR=9.52472;RPL=2.0;RPR=3.0;EPP=6.91895;EPPR=9.52472;DPRA=0.0;ODDS=14.5941;GTI=0;TYPE=del;CIGAR=1M1D35M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.8;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:60.7696:13:1:35:2:72:-7.17036,0.0,-24.0142:2:40:5:.:.:1:.:.:.:-0.00997748	./1:64.1588:36:2:77:3:58:-11.8688,-7.28696,-35.7032:3:18:17:.:.:1:.:.:.:-0.0533013
chr17	64695328	.	CAA	C	140.506	REJECT	NS=2;DP=49;DPB=100.189;AC=2;AN=3;AF=0.25;RO=3;AO=9;PRO=37.9833;PAO=21.4833;QR=112;QA=217;PQR=1351.93;PQA=743.433;SRF=0;SRR=3;SAF=4;SAR=5;SRP=9.52472;SAP=3.25157;AB=0.183673;ABP=45.5977;RUN=1;RPP=5.18177;RPPR=9.52472;RPL=3.0;RPR=6.0;EPP=9.04217;EPPR=9.52472;DPRA=0.0;ODDS=14.5941;GTI=0;TYPE=del;CIGAR=1M2D34M;NUMALT=4;MEANALT=17.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.917;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=1.895;QD=6.15;RPA=20,18;RU=A;ReadPosRankSum=-0.11;SOR=0.593;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:60.7696:13:1:35:1:36:-7.17036,-6.85388,-31.6776:1:20:5:.:.:.:.:1:.:.:.:-0.00997748	0/1:81.5794:50:2:77:8:181:-11.8688,0.0,-33.5068:16:51:30:19,24:437,0,263:.:1:1:.:.:.:-0.0533013
chr17	64695328	.	CAAA	C	140.506	REJECT	NS=2;DP=49;DPB=100.189;AC=2;AN=2;AF=0.0;RO=3;AO=3;PRO=37.9833;PAO=18.15;QR=112;QA=81;PQR=1351.93;PQA=646.1;SRF=0;SRR=3;SAF=2;SAR=1;SRP=9.52472;SAP=3.73412;AB=0.0612245;ABP=84.9501;RUN=1;RPP=9.52472;RPPR=9.52472;RPL=0.0;RPR=3.0;EPP=3.73412;EPPR=9.52472;DPRA=0.0;ODDS=14.5941;GTI=0;TYPE=del;CIGAR=1M3D33M;NUMALT=4;MEANALT=17.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:60.7696:13:1:35:1:34:-7.17036,-7.0338,-31.8576:1:20:5:.:.:1:.:.:.:-0.00997748	./1:64.1588:36:2:77:2:47:-11.8688,-17.1232,-113.93:2:12:17:.:.:1:.:.:.:-0.0533013
chr17	64695328	.	CAAAAAA	C	140.506	REJECT	NS=2;DP=49;DPB=100.189;AC=2;AN=2;AF=0.0;RO=3;AO=2;PRO=37.9833;PAO=17.4;QR=112;QA=48;PQR=1351.93;PQA=620.6;SRF=0;SRR=3;SAF=1;SAR=1;SRP=9.52472;SAP=3.0103;AB=0.0555556;ABP=64.7766;RUN=1;RPP=7.35324;RPPR=9.52472;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=9.52472;DPRA=0.0;ODDS=14.5941;GTI=0;TYPE=del;CIGAR=1M6D30M;NUMALT=4;MEANALT=23.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:60.7696:13:1:35:0:0:-7.17036,-12.0008,-57.6611:0:0:5:.:.:1:.:.:.:-0.00997748	./1:64.1588:36:2:77:2:48:-11.8688,-18.1182,-127.888:2:12:17:.:.:1:.:.:.:-0.0533013
chr17	64695640	.	G	A	1384.89	REJECT	NS=2;DP=333;DPB=380.0;AC=2;AN=4;AF=0.5;RO=308;AO=72;PRO=0.0;PAO=0.0;QR=11623;QA=2752;PQR=0.0;PQA=0.0;SRF=164;SRR=144;SAF=35;SAR=37;SRP=5.83039;SAP=3.13094;AB=0.189474;ABP=321.28;RUN=1;RPP=8.92153;RPPR=5.83039;RPL=29.0;RPR=43.0;EPP=7.35324;EPPR=4.02553;DPRA=0.0;ODDS=1.47438;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.972222;PAIREDR=0.987013;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2235;Dels=0.0;FS=0.8905;HaplotypeScore=3.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3655;QD=10.22;ReadPosRankSum=0.6215;SOR=0.5935;ClippingRankSum=0.075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.4835:86:40:1469:48:1849:-142.635,0.0,-108.391:47:55:86:38,47:1740,0,1350:1:.:1:.:.:.:-0.00997748	0/1:53.14919:289:268:10154:24:903:-2.1793,0.0,-834.266:23:8:289:264,23:114,0,10270:.:1:1:.:.:.:-0.0533013
chr17	64696212	.	T	A	10308.985	REJECT	NS=2;DP=272;DPB=314.0;AC=4;AN=4;AF=1.0;RO=1;AO=313;PRO=0.0;PAO=0.0;QR=39;QA=12071;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=183;SAR=130;SRP=5.18177;SAP=22.4981;AB=0.0;ABP=0.0;RUN=1;RPP=3.18374;RPPR=5.18177;RPL=154.0;RPR=159.0;EPP=6.6803;EPPR=5.18177;DPRA=0.0;ODDS=55.5257;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99361;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.292;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.177;QD=29.745;ReadPosRankSum=1.447;SOR=0.7145	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:82:0:0:82:3147:-283.354,-22.2395,0.0:82:100:82:0,82:3386,247,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:231:1:39:231:8924:-799.233,-59.3322,0.0:230:100:231:1,230:9875,643,0:.:1:1:.:.:.:-0.0533013
chr17	64696485	.	A	G	2049.19	PASS	SOMATIC;NS=2;DP=293;DPB=293.0;AC=1;AN=3;AF=0.25;RO=214;AO=79;PRO=0.0;PAO=0.0;QR=8282;QA=3013;PQR=0.0;PQA=0.0;SRF=116;SRR=98;SAF=42;SAR=37;SRP=6.29795;SAP=3.69747;AB=0.359091;ABP=40.9518;RUN=1;RPP=7.6556;RPPR=9.86972;RPL=46.0;RPR=33.0;EPP=12.9331;EPPR=9.86972;DPRA=3.0137;ODDS=46.5561;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987342;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.671;Dels=0.0;FS=0.0;HaplotypeScore=4.8563;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.76;QD=12.29;ReadPosRankSum=0.592;SOR=0.663	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.001:72:73:2808:0:0:0.0,-19.7931,-252.858:0:0:72:71,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.0005:220:141:5474:79:3013:-211.457,0.0,-432.815:79:36:220:135,76:38.0:0.36:2:2731,0,5467:.:1:1:.:.:1:-0.0533013
chr17	64698065	.	C	G	2346.73	PASS	SOMATIC;NS=2;DP=305;DPB=305.0;AC=1;AN=3;AF=0.25;RO=216;AO=88;PRO=0.0;PAO=0.0;QR=8320;QA=3383;PQR=0.0;PQA=0.0;SRF=81;SRR=135;SAF=32;SAR=56;SRP=32.3252;SAP=17.2236;AB=0.37931;ABP=32.3626;RUN=1;RPP=7.84676;RPPR=26.1727;RPL=51.0;RPR=37.0;EPP=3.89863;EPPR=7.87601;DPRA=3.17808;ODDS=46.5346;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99537;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.108;Dels=0.0;FS=2.359;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.643;QD=13.35;ReadPosRankSum=-0.319;SOR=0.857	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:71:73:2805:0:0:0.0,-19.7837,-252.569:0:0:71:70,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:231:143:5515:88:3383:-241.753,0.0,-433.525:88:38:230:137,86:38.0:0.392:2:3113,0,5442:.:1:1:.:.:1:-0.0533013
chr17	64698381	.	G	T	1315.76	PASS	SOMATIC;NS=2;DP=160;DPB=160.0;AC=1;AN=3;AF=0.25;RO=109;AO=51;PRO=0.0;PAO=0.0;QR=4194;QA=1961;PQR=0.0;PQA=0.0;SRF=88;SRR=21;SAF=40;SAR=11;SRP=92.4391;SAP=38.8183;AB=0.41129;ABP=11.486;RUN=1;RPP=21.7871;RPPR=3.98647;RPL=15.0;RPR=36.0;EPP=12.5903;EPPR=11.7958;DPRA=3.44444;ODDS=23.5025;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980392;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.35;Dels=0.0;FS=1.868;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.792;QD=14.56;ReadPosRankSum=1.422;SOR=0.479	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:102.069:36:36:1388:0:0:0.0,-9.78102,-125.192:0:0:36:36,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:120.159:124:73:2806:51:1961:-142.882,0.0,-218.915:51:41:124:73,51:38.0:0.411:2:1834,0,2763:.:1:1:.:.:1:-0.0533013
chr17	64699908	.	A	G	3608.2	REJECT	NS=2;DP=111;DPB=131.0;AC=4;AN=4;AF=1.0;RO=0;AO=129;PRO=0.0;PAO=0.0;QR=0;QA=4459;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=113;SAR=16;SRP=0.0;SAP=161.393;AB=0.0;ABP=0.0;RUN=1;RPP=10.4337;RPPR=0.0;RPL=54.0;RPR=75.0;EPP=4.37378;EPPR=0.0;DPRA=0.0;ODDS=28.0384;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.4186;MQMR=0.0;PAIRED=0.984496;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=66.5153;MLEAC=2;MLEAF=1.0;MQ=59.515;QD=30.85;SOR=3.6185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:110.387:39:0:0:38:1321:-118.714,-10.3018,0.0:38:100:38:0,39:1689,117,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:92:0:0:91:3138:-282.038,-24.5984,0.0:91:100:91:0,91:3457,256,0:.:1:1:.:.:.:-0.0533013
chr17	64699915	.	G	GA	1739.625	REJECT	NS=2;DP=103;DPB=182.407;AC=2;AN=3;AF=0.5;RO=14;AO=63;PRO=44.3333;PAO=56.3333;QR=520;QA=2122;PQR=1580.0;PQA=1985.5;SRF=11;SRR=3;SAF=55;SAR=8;SRP=12.937;SAP=79.1497;AB=0.605769;ABP=13.116;RUN=1;RPP=18.2106;RPPR=5.49198;RPL=21.0;RPR=42.0;EPP=12.9715;EPPR=3.63072;DPRA=0.0;ODDS=7.04526;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984127;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.601;FS=3.811;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=-0.1885;QD=15.71;RPA=11,12;RU=A;ReadPosRankSum=-0.4945;SOR=2.035;STR;ClippingRankSum=-0.671	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:15.80045:35:2:76:20:724:-78.9031,-7.56381,-13.1321:27:79:34:5,35:703,0,1:1:.:1:.:.:.:-0.00997748	0/1:93.45185:88:12:444:43:1398:-148.346,0.0,-24.6783:58:74:77:16,74:1451,0,130:.:1:1:.:.:.:-0.0533013
chr17	64699915	.	G	GAA	2065.52	REJECT	NS=2;DP=104;DPB=182.407;AC=2;AN=2;AF=0.25;RO=14;AO=16;PRO=44.3333;PAO=42.3333;QR=520;QA=581;PQR=1580.0;PQA=1502.5;SRF=11;SRR=3;SAF=14;SAR=2;SRP=12.937;SAP=22.5536;AB=0.153846;ABP=111.25;RUN=1;RPP=16.582;RPPR=5.49198;RPL=3.0;RPR=13.0;EPP=7.89611;EPPR=3.63072;DPRA=0.0;ODDS=7.04526;GTI=0;TYPE=ins;CIGAR=1M2I26M;NUMALT=2;MEANALT=7.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:30.6009:31:2:76:6:233:-78.9031,-55.7588,-65.9292:6:21:28:.:.:1:.:.:.:-0.00997748	./1:87.9037:73:12:444:10:348:-148.346,-117.5,-154.023:10:15:65:.:.:1:.:.:.:-0.0533013
chr17	64700277	.	T	TA	2806.7	REJECT	NS=2;DP=266;DPB=382.222;AC=2;AN=2;AF=0.0;RO=50;AO=15;PRO=69.0833;PAO=64.0833;QR=1800;QA=436;PQR=2395.77;PQA=2234.77;SRF=25;SRR=25;SAF=5;SAR=10;SRP=3.0103;SAP=6.62942;AB=0.056391;ABP=457.681;RUN=1;RPP=10.1038;RPPR=32.3686;RPL=4.0;RPR=11.0;EPP=3.15506;EPPR=14.1282;DPRA=0.0;ODDS=57.9809;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=4;MEANALT=30.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:74:9:311:1:27:-98.145,-98.6939,-126.593:1:2:62:.:.:1:.:.:.:-0.00997748	./1:160.002:192:41:1489:14:409:-190.373,-163.617,-299.171:14:10:144:.:.:1:.:.:.:-0.0533013
chr17	64700277	.	TA	T	2806.7	REJECT	NS=2;DP=266;DPB=382.222;AC=2;AN=4;AF=0.5;RO=50;AO=97;PRO=69.0833;PAO=67.0833;QR=1800;QA=3348;PQR=2395.77;PQA=2272.77;SRF=25;SRR=25;SAF=49;SAR=48;SRP=3.0103;SAP=3.03269;AB=0.364662;ABP=45.3295;RUN=1;RPP=21.8372;RPPR=32.3686;RPL=34.0;RPR=63.0;EPP=6.79359;EPPR=14.1282;DPRA=0.0;ODDS=57.9809;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=4;MEANALT=30.0;LEN=1;MQM=60.1237;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.755;FS=10.201;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.252;QD=10.84;ReadPosRankSum=1.09;SOR=0.707;ClippingRankSum=1.617	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:108.501:69:9:311:36:1183:-98.145,0.0,-53.1289:45:70:63:11,54:946,0,57:1:.:1:.:.:.:-0.00997748	0/1:160.002:192:41:1489:61:2165:-190.373,0.0,-211.786:61:42:144:.:.:.:.:1:.:.:.:-0.0533013
chr17	64700277	.	TAA	T	2806.7	REJECT	NS=2;DP=266;DPB=382.222;AC=2;AN=2;AF=0.0;RO=50;AO=33;PRO=69.0833;PAO=47.75;QR=1800;QA=1050;PQR=2395.77;PQA=1622.1;SRF=25;SRR=25;SAF=12;SAR=21;SRP=3.0103;SAP=8.34028;AB=0.12406;ABP=329.548;RUN=1;RPP=4.65535;RPPR=32.3686;RPL=14.0;RPR=19.0;EPP=4.65535;EPPR=14.1282;DPRA=0.0;ODDS=57.9809;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=4;MEANALT=30.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.939394;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.733;FS=11.71;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-0.443;QD=2.41;RPA=16,14;RU=A;ReadPosRankSum=1.149;SOR=1.154;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:74:9:311:12:410:-98.145,-73.7036,-169.993:12:19:62:.:.:.:.:1:.:.:.:-0.00997748	./1:129.501:241:41:1489:21:640:-190.373,-166.3,-497.431:32:22:146:105,43:742,0,2355:.:1:1:.:.:.:-0.0533013
chr17	64700277	.	TAAA	T	2806.7	REJECT	NS=2;DP=266;DPB=382.222;AC=2;AN=2;AF=0.0;RO=50;AO=11;PRO=69.0833;PAO=44.0;QR=1800;QA=384;PQR=2395.77;PQA=1517.6;SRF=25;SRR=25;SAF=9;SAR=2;SRP=3.0103;SAP=12.6832;AB=0.0413534;ABP=489.028;RUN=1;RPP=7.94546;RPPR=32.3686;RPL=8.0;RPR=3.0;EPP=7.94546;EPPR=14.1282;DPRA=0.0;ODDS=57.9809;GTI=0;TYPE=del;CIGAR=1M3D23M;NUMALT=4;MEANALT=30.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:74:9:311:4:124:-98.145,-100.532,-231.389:4:6:62:.:.:1:.:.:.:-0.00997748	./1:160.002:192:41:1489:7:260:-190.373,-205.73,-636.895:7:5:144:.:.:1:.:.:.:-0.0533013
chr17	64701109	.	G	A	3947.81	PASS	SOMATIC;NS=2;DP=518;DPB=518.0;AC=1;AN=3;AF=0.25;RO=374;AO=144;PRO=0.0;PAO=0.0;QR=14357;QA=5573;PQR=0.0;PQA=0.0;SRF=185;SRR=189;SAF=79;SAR=65;SRP=3.1032;SAP=5.96592;AB=0.38814;ABP=43.3318;RUN=1;RPP=3.55317;RPPR=3.84637;RPL=75.0;RPR=69.0;EPP=5.18177;EPPR=4.14829;DPRA=2.52381;ODDS=92.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997326;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.421;Dels=0.0;FS=4.068;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.743;QD=13.76;ReadPosRankSum=-1.744;SOR=0.883	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:143:147:5637:0:0:0.0,-39.8171,-507.204:0:0:143:140,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:371:227:8720:144:5573:-400.754,0.0,-683.788:144:39:371:219,141:38.0:0.396:2:5134,0,8636:.:1:1:.:.:1:-0.0533013
chr17	64701623	.	G	A	16619.5	REJECT	NS=2;DP=433;DPB=503.0;AC=4;AN=4;AF=1.0;RO=0;AO=503;PRO=0.0;PAO=0.0;QR=0;QA=19417;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=270;SAR=233;SRP=0.0;SAP=8.92033;AB=0.0;ABP=0.0;RUN=1;RPP=3.98163;RPPR=0.0;RPL=244.0;RPR=259.0;EPP=4.25793;EPPR=0.0;DPRA=0.0;ODDS=89.7576;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994036;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.895;SOR=0.8185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:136:0:0:137:5244:-471.871,-37.1062,0.0:136:100:136:0,136:5467,408,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:365:0:0:366:14173:-1274.7,-99.1362,0.0:365:100:365:0,364:15853,1093,0:.:1:1:.:.:.:-0.0533013
chr17	64702597	.	C	CA	699.74	PASS	DP=76;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.8805;FS=9.25;MLEAC=1;MLEAF=0.5;MQ=54.35;MQRankSum=-0.6115;QD=9.915;RPA=14,15;RU=A;ReadPosRankSum=-0.5745;SOR=1.3335;STR;ClippingRankSum=-0.392	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:7,28:35:46.0:539,0,46:28:80:35:1:.:.:.:.:.:-0.00997748	0/1:32,59:110:99.0:935,0,351:59:65:91:.:1:.:.:.:.:-0.0533013
chr17	64702755	.	C	A	1213.33	REJECT	NS=2;DP=206;DPB=277.818;AC=2;AN=2;AF=0.0;RO=45;AO=12;PRO=33.6333;PAO=25.0833;QR=1607;QA=134;PQR=1156.0;PQA=818.0;SRF=28;SRR=17;SAF=0;SAR=12;SRP=8.84915;SAP=29.068;AB=0.0582524;ABP=352.175;RUN=1;RPP=21.1059;RPPR=38.1882;RPL=1.0;RPR=11.0;EPP=21.1059;EPPR=3.05855;DPRA=0.0;ODDS=67.9769;GTI=0;TYPE=snp;CIGAR=1X21M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.973:62:11:383:3:42:-41.9447,-50.9063,-182.569:3:6:48:.:.:1:.:.:.:-0.00997748	./1:140.973:144:34:1224:9:92:-93.0631,-134.549,-666.125:9:8:112:.:.:1:.:.:.:-0.0533013
chr17	64702755	.	C	CA	1103.53	REJECT	NS=2;DP=192;DPB=277.818;AC=2;AN=4;AF=0.5;RO=45;AO=58;PRO=33.6333;PAO=35.1333;QR=1607;QA=1728;PQR=1156.0;PQA=1184.0;SRF=28;SRR=17;SAF=34;SAR=24;SRP=8.84915;SAP=6.75422;AB=0.281553;ABP=88.3934;RUN=1;RPP=75.4926;RPPR=38.1882;RPL=7.0;RPR=51.0;EPP=3.60933;EPPR=3.05855;DPRA=0.0;ODDS=67.9769;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=60.1379;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.0375;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.375;MQRankSum=0.286;QD=7.05;RPA=14,15;RU=A;ReadPosRankSum=0.2755;SOR=0.7295;STR;ClippingRankSum=0.963	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.9865:58:11:383:18:493:-41.9447,0.0,-32.5087:24:47:51:24,30:576,0,320:1:.:1:.:.:.:-0.00997748	0/1:119.9865:161:34:1224:40:1235:-93.0631,0.0,-90.5777:54:42:127:74,69:1031,0,1031:.:1:1:.:.:.:-0.0533013
chr17	64702755	.	CA	C	1213.33	REJECT	NS=2;DP=206;DPB=277.818;AC=2;AN=2;AF=0.0;RO=45;AO=15;PRO=33.6333;PAO=27.3833;QR=1607;QA=439;PQR=1156.0;PQA=922.667;SRF=28;SRR=17;SAF=9;SAR=6;SRP=8.84915;SAP=4.31318;AB=0.0728155;ABP=329.532;RUN=1;RPP=4.31318;RPPR=38.1882;RPL=6.0;RPR=9.0;EPP=6.62942;EPPR=3.05855;DPRA=0.0;ODDS=67.9769;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=59.9333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.973:62:11:383:5:147:-41.9447,-38.7363,-131.382:5:10:48:.:.:1:.:.:.:-0.00997748	./1:140.973:144:34:1224:10:292:-93.0631,-96.599,-398.282:10:9:112:.:.:1:.:.:.:-0.0533013
chr17	64702770	.	GAGT	AGAGG	1213.33	REJECT	NS=2;DP=206;DPB=277.818;AC=2;AN=2;AF=0.0;RO=45;AO=18;PRO=33.6333;PAO=12.3833;QR=1607;QA=288;PQR=1156.0;PQA=403.667;SRF=28;SRR=17;SAF=18;SAR=0;SRP=8.84915;SAP=42.0968;AB=0.0873786;ABP=307.649;RUN=1;RPP=3.0103;RPPR=38.1882;RPL=9.0;RPR=9.0;EPP=3.0103;EPPR=3.05855;DPRA=0.0;ODDS=67.9769;GTI=0;TYPE=complex;CIGAR=1M1I17M1X3M;NUMALT=5;MEANALT=20.5;LEN=23;MQM=57.1111;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.973:62:11:383:7:112:-41.9447,-51.6669,-306.367:7:15:48:.:.:1:.:.:.:-0.00997748	./1:140.973:144:34:1224:11:176:-93.0631,-159.3,-1008.09:11:10:112:.:.:1:.:.:.:-0.0533013
chr17	64702773	.	T	G	1213.33	REJECT	NS=2;DP=206;DPB=277.818;AC=2;AN=2;AF=0.0;RO=45;AO=12;PRO=33.6333;PAO=12.3833;QR=1607;QA=189;PQR=1156.0;PQA=403.667;SRF=28;SRR=17;SAF=12;SAR=0;SRP=8.84915;SAP=29.068;AB=0.0582524;ABP=352.175;RUN=1;RPP=5.9056;RPPR=38.1882;RPL=8.0;RPR=4.0;EPP=5.9056;EPPR=3.05855;DPRA=0.0;ODDS=67.9769;GTI=0;TYPE=snp;CIGAR=18M1X3M;NUMALT=5;MEANALT=20.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.973:62:11:383:4:50:-41.9447,-61.843,-312.307:4:8:48:.:.:1:.:.:.:-0.00997748	./1:140.973:144:34:1224:8:139:-93.0631,-161.818,-1011.39:8:7:112:.:.:1:.:.:.:-0.0533013
chr17	64703379	.	T	C	16483.85	REJECT	NS=2;DP=430;DPB=489.0;AC=4;AN=4;AF=1.0;RO=0;AO=489;PRO=0.0;PAO=0.0;QR=0;QA=18910;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=245;SAR=244;SRP=0.0;SAP=3.01474;AB=0.0;ABP=0.0;RUN=1;RPP=8.45008;RPPR=0.0;RPL=262.0;RPR=227.0;EPP=3.76077;EPPR=0.0;DPRA=0.0;ODDS=77.3575;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99591;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=24.11;SOR=0.8865	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.8545:116:0:0:117:4546:-409.137,-31.7209,0.0:116:100:116:0,115:4822,346,0:1:.:1:.:.:.:-0.00997748	1/1:127.8545:371:0:0:372:14364:-1291.9,-100.754,0.0:371:100:371:0,371:16035,1108,0:.:1:1:.:.:.:-0.0533013
chr17	64704385	.	A	G	2959.53	PASS	SOMATIC;NS=2;DP=494;DPB=494.0;AC=1;AN=3;AF=0.25;RO=376;AO=117;PRO=0.0;PAO=0.0;QR=14250;QA=4446;PQR=0.0;PQA=0.0;SRF=181;SRR=195;SAF=55;SAR=62;SRP=4.14224;SAP=3.91972;AB=0.325;ABP=98.7722;RUN=1;RPP=12.8283;RPPR=3.1027;RPL=47.0;RPR=70.0;EPP=7.18621;EPPR=3.21821;DPRA=2.68657;ODDS=84.5167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982906;PAIREDR=0.99734;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.705;Dels=0.0;FS=1.357;HaplotypeScore=7.956;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.247;QD=10.75;ReadPosRankSum=-0.794;SOR=0.82	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:131:134:5090:0:0:0.0,-36.2792,-458.008:0:0:131:128,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:359:242:9160:117:4446:-302.712,0.0,-726.664:116:32:358:237,112:38.0:0.32:2:3888,0,9084:.:1:1:.:.:1:-0.0533013
chr17	64705200	.	T	C	16526.8	REJECT	NS=2;DP=434;DPB=501.0;AC=4;AN=4;AF=1.0;RO=0;AO=500;PRO=0.0;PAO=0.0;QR=0;QA=19226;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=267;SAR=233;SRP=0.0;SAP=8.03074;AB=0.0;ABP=0.0;RUN=1;RPP=4.41741;RPPR=0.0;RPL=259.0;RPR=241.0;EPP=5.51184;EPPR=0.0;DPRA=0.0;ODDS=85.4246;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.919;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.935;SOR=0.877	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.724:129:0:0:130:4982:-448.329,-35.2244,0.0:129:100:129:0,128:5447,385,0:1:.:1:.:.:.:-0.00997748	1/1:123.724:369:0:0:370:14244:-1281.08,-100.199,0.0:369:100:369:0,368:15840,1096,0:.:1:1:.:.:.:-0.0533013
chr17	64705419	.	C	T	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=32.1829;PAO=18.711;QR=0;QA=38;PQR=1170.33;PQA=445.17;SRF=0;SRR=0;SAF=0;SAR=2;SRP=0.0;SAP=7.35324;AB=0.0;ABP=0.0;RUN=1;RPP=7.35324;RPPR=0.0;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=snp;CIGAR=1X38M;NUMALT=10;MEANALT=7.0;LEN=1;MQM=45.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:0:0:-2.78296,-74.4333,-870.495:0:0:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:2:38:0.0,-164.055,-2116.78:2:25:8:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=20.6829;QR=0;QA=40;PQR=1170.33;PQA=746.326;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.142857;ABP=10.7656;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.875;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M5D33M;NUMALT=10;MEANALT=5.0;LEN=5;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:1:40:-2.78296,-1.62123,-22.9793:1:14:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:0:0:0.0,-2.9818,-37.0835:0:0:8:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=3;AF=0.25;RO=0;AO=1;PRO=32.1829;PAO=20.3495;QR=0;QA=39;PQR=1170.33;PQA=705.993;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M6D32M;NUMALT=10;MEANALT=7.0;LEN=6;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:9.47389:7:0:0:0:0:-2.78296,0.0,-30.2765:0:0:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:39:0.0,-1.91615,-72.5421:1:13:8:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=4;PRO=32.1829;PAO=15.0995;QR=0;QA=105;PQR=1170.33;PQA=536.493;SRF=0;SRR=0;SAF=2;SAR=2;SRP=0.0;SAP=3.0103;AB=0.428571;ABP=3.32051;RUN=1;RPP=3.0103;RPPR=0.0;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M7D31M;NUMALT=10;MEANALT=6.0;LEN=7;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.495;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.61;MQRankSum=0.198;QD=1.27;ReadPosRankSum=0.922;SOR=1.022;ClippingRankSum=1.495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:50.736945:10:0:0:3:66:-2.78296,-1.71695,-44.3585:4:40:10:8,5:92,0,150:1:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:39:0.0,-11.6692,-180.259:1:13:8:.:.:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=32.1829;PAO=13.6995;QR=0;QA=31;PQR=1170.33;PQA=480.493;SRF=0;SRR=0;SAF=0;SAR=2;SRP=0.0;SAP=7.35324;AB=0.142857;ABP=10.7656;RUN=1;RPP=7.35324;RPPR=0.0;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M8D30M;NUMALT=10;MEANALT=6.0;LEN=8;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:1:15:-2.78296,-9.84299,-101.203:1:14:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:16:0.0,-23.056,-331.743:1:13:8:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=12.1995;QR=0;QA=15;PQR=1170.33;PQA=426.993;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M9D29M;NUMALT=10;MEANALT=7.0;LEN=9;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:0:0:-2.78296,-12.5521,-120.933:0:0:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:15:0.0,-29.2794,-376.565:1:13:8:.:.:1:.:.:.:-0.0533013
chr17	64705419	.	CTTTTTTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=10.771;QR=0;QA=14;PQR=1170.33;PQA=373.136;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=del;CIGAR=1M11D27M;NUMALT=10;MEANALT=7.0;LEN=11;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:0:0:-2.78296,-18.2518,-192.84:0:0:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:14:0.0,-42.6516,-542.347:1:13:8:.:.:1:.:.:.:-0.0533013
chr17	64705428	.	TTTTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=7.61818;QR=0;QA=39;PQR=1170.33;PQA=262.427;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=2.09051;GTI=0;TYPE=complex;CIGAR=1M6D8M1X23M;NUMALT=10;MEANALT=7.0;LEN=33;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:0:0:-2.78296,-43.2104,-483.584:0:0:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:1:39:0.0,-73.7359,-929.334:1:13:8:.:.:1:.:.:.:-0.0533013
chr17	64705431	.	TTTTT	C	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=8.39596;QR=0;QA=15;PQR=1170.33;PQA=289.761;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.142857;ABP=10.7656;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.875;ODDS=2.09051;GTI=0;TYPE=complex;CIGAR=1M4D11M1X22M;NUMALT=10;MEANALT=5.0;LEN=35;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:1:15:-2.78296,-32.3648,-370.318:1:14:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:0:0:0.0,-69.6562,-845.343:0:0:8:.:.:1:.:.:.:-0.0533013
chr17	64705441	.	TTTTTTGAG	AA	9.61225	REJECT	NS=2;DP=15;DPB=79.3333;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.1829;PAO=15.29;QR=0;QA=14;PQR=1170.33;PQA=547.883;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.142857;ABP=10.7656;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.875;ODDS=2.09051;GTI=0;TYPE=complex;CIGAR=22M7D1M1X8M;NUMALT=10;MEANALT=5.0;LEN=32;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.47389:7:0:0:1:14:-2.78296,-17.2592,-184.414:1:14:7:.:.:1:.:.:.:-0.00997748	./1:25.7277:8:0:0:0:0:0.0,-34.9437,-405.861:0:0:8:.:.:1:.:.:.:-0.0533013
chr17	64705556	.	G	C	497.144	PASS	SOMATIC;NS=2;DP=90;DPB=90.0;AC=1;AN=3;AF=0.25;RO=66;AO=24;PRO=0.0;PAO=0.0;QR=2315;QA=797;PQR=0.0;PQA=0.0;SRF=33;SRR=33;SAF=14;SAR=10;SRP=3.0103;SAP=4.45795;AB=0.375;ABP=11.6962;RUN=1;RPP=3.37221;RPPR=3.53672;RPL=13.0;RPR=11.0;EPP=6.26751;EPPR=3.1419;DPRA=2.46154;ODDS=17.1952;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.875;MQMR=60.0;PAIRED=0.958333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.006;Dels=0.0;FS=3.541;HaplotypeScore=15.4555;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.364;QD=9.89;ReadPosRankSum=-0.25;SOR=1.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:74.6779:26:26:911:0:0:0.0,-7.04182,-82.2469:0:0:26:26,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:64:40:1404:24:797:-54.4574,0.0,-109.176:24:38:64:40,23:33.0:0.375:2:651,0,1379:.:1:1:.:.:1:-0.0533013
chr17	64705799	.	G	GT	316.205	REJECT	NS=2;DP=300;DPB=428.69;AC=2;AN=4;AF=0.5;RO=236;AO=28;PRO=118.333;PAO=72.3333;QR=8773;QA=1003;PQR=4250.0;PQA=2517.0;SRF=161;SRR=75;SAF=20;SAR=8;SRP=71.062;SAP=14.1779;AB=0.0933333;ABP=433.946;RUN=1;RPP=3.32051;RPPR=3.15752;RPL=15.0;RPR=13.0;EPP=5.80219;EPPR=3.0471;DPRA=0.0;ODDS=25.7367;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:111.699:73:54:2013:9:329:-15.8505,0.0,-206.682:9:13:71:.:.:1:.:.:.:-0.00997748	0/1:160.002:227:182:6760:19:674:-21.9599,0.0,-686.176:19:9:211:.:.:1:.:.:.:-0.0533013
chr17	64705799	.	GT	G	316.205	REJECT	NS=2;DP=300;DPB=428.69;AC=2;AN=2;AF=0.0;RO=236;AO=18;PRO=118.333;PAO=63.3333;QR=8773;QA=651;PQR=4250.0;PQA=2240.0;SRF=161;SRR=75;SAF=11;SAR=7;SRP=71.062;SAP=4.9405;AB=0.06;ABP=507.487;RUN=1;RPP=3.49285;RPPR=3.15752;RPL=8.0;RPR=10.0;EPP=3.0103;EPPR=3.0471;DPRA=0.0;ODDS=25.7367;GTI=0;TYPE=del;CIGAR=1M1D27M;NUMALT=2;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:111.699:73:54:2013:8:292:-15.8505,-10.1694,-217.923:8:11:71:.:.:1:.:.:.:-0.00997748	./1:160.002:227:182:6760:10:359:-21.9599,-39.2099,-741.742:10:5:211:.:.:1:.:.:.:-0.0533013
chr17	64706781	.	A	G	3399.06	PASS	SOMATIC;NS=2;DP=448;DPB=448.0;AC=1;AN=4;AF=0.25;RO=316;AO=131;PRO=0.0;PAO=0.0;QR=11884;QA=4905;PQR=0.0;PQA=0.0;SRF=127;SRR=189;SAF=60;SAR=71;SRP=29.4253;SAP=5.01601;AB=0.373219;ABP=52.0138;RUN=1;RPP=3.82253;RPPR=3.12025;RPL=62.0;RPR=69.0;EPP=8.99428;EPPR=17.5509;DPRA=3.61856;ODDS=60.8036;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987342;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.138;Dels=0.0;FS=4.304;HaplotypeScore=16.6492;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.295;QD=12.54;ReadPosRankSum=0.99;SOR=0.503	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:97:96:3518:0:0:0.0,-25.9807,-316.672:0:0:96:.:.:.:.:0:.:.:.:-0.00997748	0/1:129.501:349:220:8366:131:4905:-346.129,0.0,-657.55:131:37:349:217,131:4391,0,8181:.:1:1:.:.:.:-0.0533013
chr17	64706992	.	C	CA	43.3911	PASS	SOMATIC;NS=2;DP=85;DPB=113.542;AC=2;AN=2;AF=0.0;RO=63;AO=7;PRO=28.0;PAO=19.0;QR=2343;QA=203;PQR=971.333;PQA=621.333;SRF=26;SRR=37;SAF=4;SAR=3;SRP=7.18091;SAP=3.32051;AB=0.107692;ABP=89.9026;RUN=1;RPP=10.7656;RPPR=8.83536;RPL=6.0;RPR=1.0;EPP=3.32051;EPPR=15.4532;DPRA=0.0;ODDS=1.86888;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:8.79816:20:16:592:0:0:-1.77974,-7.48448,-70.7106:0:0:18:.:.:1:.:.:.:-0.00997748	./1:18.6203:65:47:1751:7:203:-9.66461,-3.87312,-165.093:7:11:62:.:.:1:.:.:.:-0.0533013
chr17	64706992	.	CA	C	43.3911	REJECT	NS=2;DP=85;DPB=113.542;AC=2;AN=4;AF=0.5;RO=63;AO=10;PRO=28.0;PAO=20.0;QR=2343;QA=300;PQR=971.333;PQA=662.333;SRF=26;SRR=37;SAF=0;SAR=10;SRP=7.18091;SAP=24.725;AB=0.117647;ABP=110.945;RUN=1;RPP=6.48466;RPPR=8.83536;RPL=7.0;RPR=3.0;EPP=6.48466;EPPR=15.4532;DPRA=0.0;ODDS=1.86888;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984127;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8.79816:20:16:592:2:52:-1.77974,0.0,-62.4268:2:11:18:.:.:1:.:.:.:-0.00997748	0/1:18.6203:65:47:1751:8:248:-9.66461,0.0,-160.934:8:13:62:.:.:1:.:.:.:-0.0533013
chr17	64707202	.	T	C	2271.63	PASS	SOMATIC;NS=2;DP=314;DPB=314.0;AC=1;AN=3;AF=0.25;RO=224;AO=90;PRO=0.0;PAO=0.0;QR=8548;QA=3428;PQR=0.0;PQA=0.0;SRF=176;SRR=48;SAF=71;SAR=19;SRP=161.838;SAP=68.251;AB=0.376569;ABP=34.6375;RUN=1;RPP=37.8504;RPPR=96.1122;RPL=26.0;RPR=64.0;EPP=12.6613;EPPR=11.735;DPRA=3.18667;ODDS=47.7575;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7778;MQMR=59.9688;PAIRED=1.0;PAIREDR=0.995536;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.775;Dels=0.0;FS=0.0;HaplotypeScore=7.7654;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.706;QD=13.01;ReadPosRankSum=2.038;SOR=0.7	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.124:73:75:2844:0:0:0.0,-20.3149,-256.067:0:0:73:72,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:118.562:239:149:5704:90:3428:-243.642,0.0,-448.369:90:38:239:143,88:38.0:0.384:2:3137,0,5645:.:1:1:.:.:1:-0.0533013
chr17	64707461	.	A	G	4405.94	PASS	SOMATIC;NS=2;DP=563;DPB=563.0;AC=1;AN=3;AF=0.25;RO=397;AO=165;PRO=0.0;PAO=0.0;QR=15360;QA=6263;PQR=0.0;PQA=0.0;SRF=197;SRR=200;SAF=78;SAR=87;SRP=3.05953;SAP=4.0763;AB=0.392857;ABP=44.8887;RUN=1;RPP=14.0782;RPPR=24.7196;RPL=68.0;RPR=97.0;EPP=25.133;EPPR=32.1584;DPRA=2.93706;ODDS=89.565;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993939;PAIREDR=0.992443;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.333;Dels=0.0;FS=0.0;HaplotypeScore=8.7974;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.681;QD=13.6;ReadPosRankSum=-0.196;SOR=0.74	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.355:140:142:5446:0:0:0.0,-38.4716,-490.042:0:0:139:136,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.6775:419:255:9914:165:6263:-449.525,0.0,-777.889:165:39:419:244,157:38.0:0.391:2:5725,0,9802:.:1:1:.:.:1:-0.0533013
chr17	64707598	.	A	G	4022.49	PASS	SOMATIC;NS=2;DP=554;DPB=554.0;AC=1;AN=3;AF=0.25;RO=400;AO=154;PRO=0.0;PAO=0.0;QR=14797;QA=5840;PQR=0.0;PQA=0.0;SRF=194;SRR=206;SAF=81;SAR=73;SRP=3.79203;SAP=3.91273;AB=0.357309;ABP=79.2335;RUN=1;RPP=8.65049;RPPR=4.40004;RPL=87.0;RPR=67.0;EPP=5.77399;EPPR=8.56927;DPRA=3.50407;ODDS=77.6305;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993506;PAIREDR=0.995;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.913;Dels=0.0;FS=0.543;HaplotypeScore=25.2012;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.927;QD=12.11;ReadPosRankSum=0.564;SOR=0.788	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:122:123:4538:0:0:0.0,-33.2885,-408.38:0:0:122:122,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:429:277:10259:154:5840:-408.628,0.0,-806.009:153:36:429:266,148:38.0:0.36:2:5225,0,10026:.:1:1:.:.:1:-0.0533013
chr17	64708358	.	C	G	17061.55	REJECT	NS=2;DP=452;DPB=510.0;AC=4;AN=4;AF=1.0;RO=0;AO=509;PRO=0.0;PAO=0.0;QR=0;QA=19373;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=287;SAR=222;SRP=0.0;SAP=21.0348;AB=0.0;ABP=0.0;RUN=1;RPP=3.11695;RPPR=0.0;RPL=252.0;RPR=257.0;EPP=14.9939;EPPR=0.0;DPRA=0.0;ODDS=76.0364;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7927;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.91;SOR=0.9225	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:115:4349:-391.397,-31.1471,0.0:115:100:115:0,115:4799,345,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:394:0:0:394:15024:-1351.2,-106.66,0.0:394:100:394:0,394:16799,1165,0:.:1:1:.:.:.:-0.0533013
chr17	64708396	.	T	C	18084.1	REJECT	NS=2;DP=478;DPB=535.0;AC=4;AN=4;AF=1.0;RO=1;AO=534;PRO=0.0;PAO=0.0;QR=38;QA=20450;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=279;SAR=255;SRP=5.18177;SAP=5.35256;AB=0.0;ABP=0.0;RUN=1;RPP=9.51658;RPPR=5.18177;RPL=247.0;RPR=287.0;EPP=13.1764;EPPR=5.18177;DPRA=0.0;ODDS=74.2113;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994382;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.983;Dels=0.0;FS=0.0;HaplotypeScore=7.7393;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.177;QD=31.385;ReadPosRankSum=-1.049;SOR=0.5365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:112:4278:-385.035,-30.3545,0.0:111:100:111:0,111:4613,334,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:422:1:38:422:16172:-1450.99,-111.101,0.0:421:100:422:1,420:17890,1200,0:.:1:1:.:.:.:-0.0533013
chr17	64708436	.	T	A	18457.8	REJECT	NS=2;DP=506;DPB=573.0;AC=4;AN=4;AF=1.0;RO=0;AO=573;PRO=0.0;PAO=0.0;QR=0;QA=21151;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=268;SAR=305;SRP=0.0;SAP=8.19834;AB=0.0;ABP=0.0;RUN=1;RPP=3.19599;RPPR=0.0;RPL=283.0;RPR=290.0;EPP=37.2119;EPPR=0.0;DPRA=0.0;ODDS=86.0099;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99651;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8796;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.955;SOR=0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:130:0:0:131:4849:-436.397,-35.4786,0.0:130:100:130:0,130:5044,390,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:441:0:0:442:16302:-1466.18,-119.571,0.0:441:100:441:0,440:18002,1276,0:.:1:1:.:.:.:-0.0533013
chr17	64708866	.	A	G	16120.35	REJECT	NS=2;DP=426;DPB=492.0;AC=4;AN=4;AF=1.0;RO=0;AO=491;PRO=0.0;PAO=0.0;QR=0;QA=18735;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=247;SRP=0.0;SAP=3.0501;AB=0.0;ABP=0.0;RUN=1;RPP=3.0501;RPPR=0.0;RPL=244.0;RPR=247.0;EPP=9.737;EPPR=0.0;DPRA=0.0;ODDS=84.7052;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995927;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8043;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.475;SOR=0.824	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.134:128:0:0:129:4865:-437.764,-34.912,0.0:128:100:128:0,127:4956,380,0:1:.:1:.:.:.:-0.00997748	1/1:125.134:361:0:0:362:13870:-1247.43,-98.0108,0.0:361:100:361:0,361:15467,1069,0:.:1:1:.:.:.:-0.0533013
chr17	64709029	.	T	C	8320.46	REJECT	NS=2;DP=345;DPB=406.0;AC=3;AN=4;AF=0.75;RO=101;AO=305;PRO=0.0;PAO=0.0;QR=3924;QA=11647;PQR=0.0;PQA=0.0;SRF=46;SRR=55;SAF=146;SAR=159;SRP=4.75178;SAP=4.21351;AB=0.652921;ABP=62.1176;RUN=1;RPP=5.06786;RPPR=3.0318;RPL=161.0;RPR=144.0;EPP=6.77656;EPPR=3.0318;DPRA=0.0;ODDS=72.7085;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.963934;PAIREDR=0.970297;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.714;Dels=0.0;FS=1.7135;HaplotypeScore=3.9649;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.735;QD=28.635;ReadPosRankSum=-0.03;SOR=0.7955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:111:0:0:115:4413:-397.15,-31.1509,0.0:111:100:111:0,108:4392,324,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:287:101:3924:190:7234:-571.863,0.0,-274.159:188:65:287:98,186:7045,0,3420:.:1:1:.:.:.:-0.0533013
chr17	64709167	.	C	CTTT	208.285	REJECT	NS=2;DP=22;DPB=109.241;AC=2;AN=3;AF=0.25;RO=4;AO=5;PRO=62.0;PAO=63.5;QR=140;QA=87;PQR=2158.0;PQA=2160.0;SRF=1;SRR=3;SAF=1;SAR=4;SRP=5.18177;SAP=6.91895;AB=0.227273;ABP=17.2236;RUN=1;RPP=13.8677;RPPR=3.0103;RPL=5.0;RPR=0.0;EPP=6.91895;EPPR=5.18177;DPRA=0.0;ODDS=0.399576;GTI=0;TYPE=ins;CIGAR=1M3I28M;NUMALT=2;MEANALT=7.0;LEN=3;MQM=45.2;MQMR=44.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:2.96311:5:1:33:1:40:-9.38034,0.0,-0.525716:1:50:2:.:.:1:.:.:.:-0.00997748	./1:23.8735:17:3:107:4:47:-14.7491,-0.269766,-15.523:4:44:9:.:.:1:.:.:.:-0.0533013
chr17	64709167	.	C	CTTTT	208.285	REJECT	NS=2;DP=22;DPB=109.241;AC=2;AN=3;AF=0.25;RO=4;AO=2;PRO=62.0;PAO=62.5;QR=140;QA=55;PQR=2158.0;PQA=2146.0;SRF=1;SRR=3;SAF=1;SAR=1;SRP=5.18177;SAP=3.0103;AB=0.117647;ABP=24.5973;RUN=1;RPP=7.35324;RPPR=3.0103;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=0.399576;GTI=0;TYPE=ins;CIGAR=1M4I28M;NUMALT=2;MEANALT=10.0;LEN=4;MQM=50.0;MQMR=44.5;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:2.96311:5:1:33:0:0:-9.38034,-3.33301,-4.13025:0:0:2:.:.:1:.:.:.:-0.00997748	0/1:23.8735:17:3:107:2:55:-14.7491,0.0,-15.639:2:22:9:.:.:1:.:.:.:-0.0533013
chr17	64709370	.	A	G	3643.395	REJECT	NS=2;DP=161;DPB=184.0;AC=3;AN=4;AF=0.75;RO=47;AO=137;PRO=0.0;PAO=0.0;QR=1787;QA=5158;PQR=0.0;PQA=0.0;SRF=45;SRR=2;SAF=124;SAR=13;SRP=88.4369;SAP=198.3;AB=0.65942;ABP=33.4739;RUN=1;RPP=38.0233;RPPR=16.3625;RPL=45.0;RPR=92.0;EPP=54.5075;EPPR=16.3625;DPRA=0.0;ODDS=29.7364;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992701;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.458;Dels=0.0;FS=3.2805;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.036;QD=29.34;ReadPosRankSum=0.306;SOR=2.508	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:113.7155:46:0:0:46:1749:-157.648,-12.4884,0.0:46:100:46:0,46:1969,138,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:138:47:1787:91:3409:-269.391,0.0,-123.44:91:66:138:47,91:3410,0,1584:.:1:1:.:.:.:-0.0533013
chr17	64709437	.	G	T	1554.8	PASS	SOMATIC;NS=2;DP=247;DPB=247.0;AC=1;AN=3;AF=0.25;RO=183;AO=64;PRO=0.0;PAO=0.0;QR=6869;QA=2416;PQR=0.0;PQA=0.0;SRF=148;SRR=35;SAF=50;SAR=14;SRP=154.527;SAP=46.9826;AB=0.336842;ABP=46.9426;RUN=1;RPP=3.55317;RPPR=3.30695;RPL=30.0;RPR=34.0;EPP=11.6962;EPPR=38.9049;DPRA=3.33333;ODDS=36.5965;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.6406;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.374;Dels=0.0;FS=0.694;HaplotypeScore=7.7449;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0.696;QD=10.96;ReadPosRankSum=-0.814;SOR=0.602	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.719:56:57:2159:0:0:0.0,-15.4677,-194.526:0:0:56:56,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:120.924:190:126:4710:64:2416:-165.864,0.0,-372.326:64:34:190:121,61:37.0:0.333:2:2110,0,4677:.:1:1:.:.:1:-0.0533013
chr17	64710287	.	G	A	3130.96	PASS	SOMATIC;NS=2;DP=437;DPB=437.0;AC=1;AN=3;AF=0.25;RO=315;AO=122;PRO=0.0;PAO=0.0;QR=11813;QA=4577;PQR=0.0;PQA=0.0;SRF=157;SRR=158;SAF=54;SAR=68;SRP=3.01719;SAP=6.49889;AB=0.356725;ABP=63.9893;RUN=1;RPP=6.49889;RPPR=12.4476;RPL=54.0;RPR=68.0;EPP=3.0815;EPPR=7.31878;DPRA=3.6;ODDS=60.2108;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991803;PAIREDR=0.993651;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.912;Dels=0.0;FS=3.671;HaplotypeScore=12.6304;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.354;QD=11.93;ReadPosRankSum=0.941;SOR=0.902	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:140.245:94:95:3565:0:0:0.0,-25.7232,-320.901:0:0:94:94,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.6225:342:220:8248:122:4577:-319.099,0.0,-649.299:122:36:342:212,120:37.0:0.366:2:4110,0,8229:.:1:1:.:.:1:-0.0533013
chr17	64710423	.	A	T	14062.9	REJECT	NS=2;DP=379;DPB=435.0;AC=4;AN=4;AF=1.0;RO=1;AO=433;PRO=0.0;PAO=0.0;QR=27;QA=16292;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=196;SAR=237;SRP=5.18177;SAP=11.4404;AB=0.0;ABP=0.0;RUN=1;RPP=13.1656;RPPR=5.18177;RPL=239.0;RPR=194.0;EPP=6.6662;EPPR=5.18177;DPRA=0.0;ODDS=69.7004;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997691;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8798;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.765;SOR=0.8745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:1:27:111:4101:-366.258,-27.4923,0.0:109:99:110:0,108:4377,323,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:323:0:0:322:12191:-1096.51,-87.1732,0.0:322:100:322:0,322:13582,948,0:.:1:1:.:.:.:-0.0533013
chr17	64710488	.	A	C	2894.03	PASS	SOMATIC;NS=2;DP=446;DPB=446.0;AC=1;AN=3;AF=0.25;RO=334;AO=112;PRO=0.0;PAO=0.0;QR=12755;QA=4269;PQR=0.0;PQA=0.0;SRF=177;SRR=157;SAF=58;SAR=54;SRP=5.61087;SAP=3.32051;AB=0.340426;ABP=75.7777;RUN=1;RPP=3.08785;RPPR=3.66044;RPL=55.0;RPR=57.0;EPP=4.94911;EPPR=17.9896;DPRA=2.81197;ODDS=73.9524;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991071;PAIREDR=0.994012;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.592;Dels=0.0;FS=2.514;HaplotypeScore=6.7819;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.398;QD=11.4;ReadPosRankSum=0.49;SOR=0.564	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:115:117:4466:0:0:0.0,-31.6911,-401.916:0:0:115:113,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:328:217:8289:112:4269:-294.88,0.0,-656.457:111:34:328:212,108:38.0:0.338:2:3767,0,8287:.:1:1:.:.:1:-0.0533013
chr17	64711248	.	G	GT	531.594	REJECT	NS=2;DP=258;DPB=352.818;AC=2;AN=3;AF=0.25;RO=149;AO=37;PRO=83.0;PAO=61.0;QR=5310;QA=1165;PQR=2846.0;PQA=2012.0;SRF=90;SRR=59;SAF=27;SAR=10;SRP=17.0156;SAP=19.9713;AB=0.143411;ABP=287.961;RUN=1;RPP=3.5385;RPPR=3.37464;RPL=17.0;RPR=20.0;EPP=3.5385;EPPR=3.72441;DPRA=0.0;ODDS=2.63821;GTI=1;TYPE=ins;CIGAR=1M1I21M;NUMALT=2;MEANALT=18.5;LEN=1;MQM=60.7027;MQMR=59.9664;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.169;FS=11.27;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.164;QD=1.27;RPA=13,14;RU=T;ReadPosRankSum=-2.012;SOR=1.556;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.29987:52:29:1016:6:152:-5.17984,-0.986285,-105.095:6:15:40:.:.:.:.:1:.:.:.:-0.00997748	0/1:129.501:248:120:4294:31:1013:-55.7062,0.0,-404.752:42:20:202:183,53:409,0,3403:.:1:1:.:.:.:-0.0533013
chr17	64711248	.	GT	G	531.594	REJECT	NS=2;DP=258;DPB=352.818;AC=2;AN=3;AF=0.25;RO=149;AO=23;PRO=83.0;PAO=54.0;QR=5310;QA=731;PQR=2846.0;PQA=1825.0;SRF=90;SRR=59;SAF=12;SAR=11;SRP=17.0156;SAP=3.10471;AB=0.0891473;ABP=381.284;RUN=1;RPP=7.63648;RPPR=3.37464;RPL=8.0;RPR=15.0;EPP=5.3706;EPPR=3.72441;DPRA=0.0;ODDS=2.63821;GTI=1;TYPE=del;CIGAR=1M1D20M;NUMALT=2;MEANALT=18.5;LEN=1;MQM=60.0;MQMR=59.9664;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.413;FS=5.245;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.677;QD=0.89;ReadPosRankSum=-0.224;SOR=1.122;ClippingRankSum=0.251	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:48.649935:51:29:1016:5:117:-5.17984,0.0,-109.785:8:17:45:40,11:97,0,830:1:.:1:.:.:.:-0.00997748	./1:160.002:206:120:4294:18:614:-55.7062,-39.6995,-513.498:18:11:169:.:.:.:.:1:.:.:.:-0.0533013
chr17	64711817	.	G	A	10046.435000000001	REJECT	NS=2;DP=458;DPB=525.0;AC=3;AN=4;AF=0.75;RO=158;AO=367;PRO=0.0;PAO=0.0;QR=5959;QA=13828;PQR=0.0;PQA=0.0;SRF=74;SRR=84;SAF=166;SAR=201;SRP=4.38465;SAP=10.2584;AB=0.6;ABP=37.3196;RUN=1;RPP=13.9505;RPPR=3.2302;RPL=205.0;RPR=162.0;EPP=3.15822;EPPR=6.52863;DPRA=0.0;ODDS=81.9872;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9728;MQMR=60.0;PAIRED=0.989101;PAIREDR=0.993671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.595;Dels=0.0;FS=0.0;HaplotypeScore=15.6466;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.218;QD=27.53;ReadPosRankSum=1.739;SOR=0.869	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:129:0:0:130:4879:-439.019,-35.1806,0.0:129:100:129:0,128:5013,382,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:393:158:5959:237:8949:-697.943,0.0,-429.021:235:60:393:158,234:8830,0,5450:.:1:1:.:.:.:-0.0533013
chr17	64711852	.	G	GT	283.721	REJECT	NS=2;DP=429;DPB=496.857;AC=2;AN=4;AF=0.5;RO=359;AO=43;PRO=73.5;PAO=64.5;QR=13547;QA=1589;PQR=2565.5;PQA=2243.5;SRF=181;SRR=178;SAF=20;SAR=23;SRP=3.06474;SAP=3.46479;AB=0.100233;ABP=598.515;RUN=1;RPP=5.48477;RPPR=4.75837;RPL=18.0;RPR=25.0;EPP=7.10075;EPPR=8.82307;DPRA=0.0;ODDS=30.4455;GTI=0;TYPE=ins;CIGAR=1M1I13M;NUMALT=1;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991643;technology.ILLUMINA=1.0;BaseQRankSum=-1.365;FS=5.41;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.707;QD=0.83;ReadPosRankSum=-1.392;SOR=1.402;ClippingRankSum=-0.32	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.7675:107:87:3263:13:459:-13.3938,0.0,-275.942:15:15:104:91,18:145,0,2183:1:.:1:.:.:.:-0.00997748	0/1:160.002:323:272:10284:30:1130:-20.721,0.0,-862.968:30:10:302:.:.:.:.:1:.:.:.:-0.0533013
chr17	64712271	.	G	GT	300.85	REJECT	NS=2;DP=411;DPB=467.667;AC=2;AN=2;AF=0.0;RO=300;AO=39;PRO=47.5;PAO=41.5;QR=11089;QA=1204;PQR=1665.33;PQA=1441.33;SRF=151;SRR=149;SAF=14;SAR=25;SRP=3.03925;SAP=9.74743;AB=0.0948905;ABP=588.88;RUN=1;RPP=4.40227;RPPR=7.90335;RPL=22.0;RPR=17.0;EPP=3.51141;EPPR=14.5915;DPRA=0.0;ODDS=7.64314;GTI=0;TYPE=ins;CIGAR=1M1I14M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:33.1951:117:86:3163:8:264:-4.40091,-6.65665,-272.108:8:8:105:.:.:1:.:.:.:-0.00997748	./1:127.829:294:214:7926:31:940:-31.6169,-14.1143,-673.224:31:11:280:.:.:1:.:.:.:-0.0533013
chr17	64712271	.	GT	G	300.85	REJECT	NS=2;DP=411;DPB=467.667;AC=2;AN=4;AF=0.5;RO=300;AO=46;PRO=47.5;PAO=37.0;QR=11089;QA=1510;PQR=1665.33;PQA=1275.33;SRF=151;SRR=149;SAF=21;SAR=25;SRP=3.03925;SAP=3.76559;AB=0.111922;ABP=540.653;RUN=1;RPP=6.03148;RPPR=7.90335;RPL=27.0;RPR=19.0;EPP=7.73089;EPPR=14.5915;DPRA=0.0;ODDS=7.64314;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.6522;MQMR=60.0;PAIRED=0.956522;PAIREDR=0.996667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33.1951:117:86:3163:11:359:-4.40091,0.0,-275.439:11:10:105:.:.:1:.:.:.:-0.00997748	0/1:127.829:294:214:7926:35:1151:-31.6169,0.0,-702.044:35:13:280:.:.:1:.:.:.:-0.0533013
chr17	64712333	.	A	C	9230.235	REJECT	NS=2;DP=418;DPB=483.0;AC=3;AN=4;AF=0.75;RO=141;AO=341;PRO=0.0;PAO=0.0;QR=5161;QA=12863;PQR=0.0;PQA=0.0;SRF=76;SRR=65;SAF=188;SAR=153;SRP=4.87376;SAP=10.811;AB=0.600567;ABP=34.0199;RUN=1;RPP=3.32233;RPPR=4.25774;RPL=167.0;RPR=174.0;EPP=3.5261;EPPR=6.47542;DPRA=0.0;ODDS=81.4268;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.1173;MQMR=60.0;PAIRED=0.991202;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=5.601;Dels=0.0;FS=0.6495;HaplotypeScore=18.4724;MLEAC=1;MLEAF=0.75;MQ=60.09;MQRankSum=-0.475;QD=24.755;ReadPosRankSum=0.594;SOR=0.7835	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:129:4832:-434.845,-34.9373,0.0:126:100:126:0,124:5146,373,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:353:141:5161:212:8031:-626.759,0.0,-368.712:212:60:353:141,212:7941,0,4733:.:1:1:.:.:.:-0.0533013
chr17	64712547	.	C	T	3154.4	PASS	SOMATIC;NS=2;DP=482;DPB=482.0;AC=1;AN=3;AF=0.25;RO=360;AO=122;PRO=0.0;PAO=0.0;QR=13899;QA=4683;PQR=0.0;PQA=0.0;SRF=186;SRR=174;SAF=54;SAR=68;SRP=3.87889;SAP=6.49889;AB=0.331522;ABP=93.7401;RUN=1;RPP=3.65106;RPPR=4.96463;RPL=64.0;RPR=58.0;EPP=6.49889;EPPR=23.3015;DPRA=3.22807;ODDS=72.0396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997222;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.482;Dels=0.0;FS=11.195;HaplotypeScore=3.9229;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.326;QD=11.12;ReadPosRankSum=-0.835;SOR=0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:114:4322:0:0:0.0,-30.8604,-388.957:0:0:111:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:367:246:9577:122:4683:-321.499,0.0,-761.675:122:33:367:236,118:38.0:0.336:2:4111,0,9595:.:1:1:.:.:1:-0.0533013
chr17	64712832	.	A	G	3884.17	PASS	SOMATIC;NS=2;DP=498;DPB=498.0;AC=1;AN=3;AF=0.25;RO=353;AO=144;PRO=0.0;PAO=0.0;QR=13422;QA=5552;PQR=0.0;PQA=0.0;SRF=177;SRR=176;SAF=76;SAR=68;SRP=3.01645;SAP=3.9754;AB=0.373057;ABP=57.0383;RUN=1;RPP=13.2042;RPPR=13.3509;RPL=85.0;RPR=59.0;EPP=4.51827;EPPR=19.0103;DPRA=3.44643;ODDS=70.8714;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994334;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.564;Dels=0.0;FS=6.856;HaplotypeScore=7.8313;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.415;QD=13.11;ReadPosRankSum=-0.129;SOR=0.675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:112:112:4211:0:0:0.0,-30.3531,-379.03:0:0:112:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:385:241:9211:144:5552:-395.09,0.0,-724.163:144:38:384:234,141:38.0:0.379:2:5077,0,9092:.:1:1:.:.:1:-0.0533013
chr17	64713025	.	A	G	15643.9	REJECT	NS=2;DP=411;DPB=478.0;AC=4;AN=4;AF=1.0;RO=0;AO=478;PRO=0.0;PAO=0.0;QR=0;QA=18424;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=233;SAR=245;SRP=0.0;SAP=3.66447;AB=0.0;ABP=0.0;RUN=1;RPP=4.82743;RPPR=0.0;RPL=229.0;RPR=249.0;EPP=16.2572;EPPR=0.0;DPRA=0.0;ODDS=87.3153;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997908;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.245;SOR=0.7605	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.07:132:0:0:133:5145:-462.989,-36.0455,0.0:132:100:132:0,132:5467,397,0:1:.:1:.:.:.:-0.00997748	1/1:127.07:345:0:0:345:13279:-1194.29,-93.4148,0.0:345:100:345:0,345:14802,1020,0:.:1:1:.:.:.:-0.0533013
chr17	64713272	.	T	C	3888.05	PASS	SOMATIC;NS=2;DP=480;DPB=480.0;AC=1;AN=3;AF=0.25;RO=334;AO=145;PRO=0.0;PAO=0.0;QR=12556;QA=5518;PQR=0.0;PQA=0.0;SRF=170;SRR=164;SAF=76;SAR=69;SRP=3.24435;SAP=3.74411;AB=0.384615;ABP=46.6068;RUN=1;RPP=3.14508;RPPR=3.03631;RPL=74.0;RPR=71.0;EPP=4.82236;EPPR=6.15698;DPRA=3.66019;ODDS=65.2841;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993103;PAIREDR=0.997006;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.476;Dels=0.0;FS=1.242;HaplotypeScore=6.8127;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.01;QD=13.27;ReadPosRankSum=0.078;SOR=0.762	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:101:103:3911:0:0:0.0,-27.9266,-352.066:0:0:101:99,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:376:231:8645:145:5518:-394.485,0.0,-675.794:144:39:375:223,141:38.0:0.392:2:5016,0,8571:.:1:1:.:.:1:-0.0533013
chr17	64713437	.	A	G	14863.25	REJECT	NS=2;DP=390;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=440;PRO=0.0;PAO=0.0;QR=0;QA=16852;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=208;SAR=232;SRP=0.0;SAP=5.85295;AB=0.0;ABP=0.0;RUN=1;RPP=3.32615;RPPR=0.0;RPL=216.0;RPR=224.0;EPP=3.72096;EPPR=0.0;DPRA=0.0;ODDS=67.3709;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.7934;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.26;SOR=0.809	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3849:-346.476,-27.3837,0.0:100:100:100:0,99:4196,298,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:339:0:0:339:13003:-1169.54,-91.8123,0.0:339:100:339:0,339:14641,1017,0:.:1:1:.:.:.:-0.0533013
chr17	64714367	.	G	A	2591.86	PASS	SOMATIC;NS=2;DP=370;DPB=370.0;AC=1;AN=3;AF=0.25;RO=272;AO=98;PRO=0.0;PAO=0.0;QR=10401;QA=3777;PQR=0.0;PQA=0.0;SRF=98;SRR=174;SAF=43;SAR=55;SRP=49.1222;SAP=6.20103;AB=0.375969;ABP=37.4845;RUN=1;RPP=3.09893;RPPR=7.60871;RPL=48.0;RPR=50.0;EPP=20.3821;EPPR=59.3408;DPRA=0.0;ODDS=62.8725;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.996324;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.597;Dels=0.0;FS=4.532;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.396;QD=13.13;ReadPosRankSum=-1.171;SOR=0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:151.949:108:111:4236:1:39:0.0,-26.8358,-377.738:1:1:108:104,1:.:0.009524:0:.:.:.:0:.:.:0:-0.00997748	0/1:125.4745:258:161:6165:97:3738:-266.37,0.0,-484.672:97:38:258:156,94:38.0:0.377:2:3415,0,6107:.:1:1:.:.:1:-0.0533013
chr17	64714579	.	C	T	691.674	PASS	SOMATIC;NS=2;DP=97;DPB=97.0;AC=1;AN=3;AF=0.25;RO=69;AO=28;PRO=0.0;PAO=0.0;QR=2610;QA=1058;PQR=0.0;PQA=0.0;SRF=10;SRR=59;SAF=7;SAR=21;SRP=78.5712;SAP=18.2106;AB=0.4;ABP=9.09042;RUN=1;RPP=7.97367;RPPR=33.2536;RPL=18.0;RPR=10.0;EPP=10.7656;EPPR=61.1995;DPRA=2.59259;ODDS=17.8521;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.964286;PAIREDR=0.985507;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.055;Dels=0.0;FS=10.222;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.252;QD=13.21;ReadPosRankSum=-0.105;SOR=0.107	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:77.5307:27:27:992:0:0:0.0,-7.3271,-89.5618:0:0:27:27,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:120.5835:70:42:1618:28:1058:-76.2983,0.0,-126.726:28:40:70:42,27:37.0:0.4:2:940,0,1611:.:1:1:.:.:1:-0.0533013
chr17	64715108	.	A	T	7952.5	REJECT	NS=2;DP=361;DPB=408.0;AC=3;AN=4;AF=0.75;RO=123;AO=285;PRO=0.0;PAO=0.0;QR=4731;QA=10810;PQR=0.0;PQA=0.0;SRF=55;SRR=68;SAF=118;SAR=167;SRP=5.99387;SAP=21.304;AB=0.60828;ABP=34.9877;RUN=1;RPP=4.72462;RPPR=17.8575;RPL=150.0;RPR=135.0;EPP=4.29794;EPPR=3.87536;DPRA=0.0;ODDS=59.605;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992982;PAIREDR=0.99187;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.866;Dels=0.0;FS=0.213;HaplotypeScore=3.882;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.215;QD=23.52;ReadPosRankSum=0.815;SOR=1.0665	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:0:0:94:3555:-319.999,-25.4601,0.0:92:100:92:0,90:3637,271,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:314:123:4731:191:7255:-567.508,0.0,-340.527:191:61:314:123,191:7138,0,4370:.:1:1:.:.:.:-0.0533013
chr17	64715283	.	C	T	16120.9	REJECT	NS=2;DP=423;DPB=482.0;AC=4;AN=4;AF=1.0;RO=0;AO=482;PRO=0.0;PAO=0.0;QR=0;QA=18514;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=272;SAR=210;SRP=0.0;SAP=20.328;AB=0.0;ABP=0.0;RUN=1;RPP=8.21823;RPPR=0.0;RPL=258.0;RPR=224.0;EPP=3.17248;EPPR=0.0;DPRA=0.0;ODDS=76.6694;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995851;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9661;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.18;SOR=1.061	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:116:4473:-402.54,-31.4221,0.0:115:100:115:0,115:4548,344,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:365:0:0:366:14041:-1262.85,-99.1151,0.0:365:100:365:0,365:15682,1087,0:.:1:1:.:.:.:-0.0533013
chr17	64715399	.	A	G	3734.41	PASS	SOMATIC;NS=2;DP=496;DPB=496.0;AC=1;AN=3;AF=0.25;RO=357;AO=139;PRO=0.0;PAO=0.0;QR=13726;QA=5350;PQR=0.0;PQA=0.0;SRF=164;SRR=193;SAF=72;SAR=67;SRP=8.12573;SAP=3.40085;AB=0.371658;ABP=56.5191;RUN=1;RPP=3.77578;RPPR=3.16236;RPL=73.0;RPR=66.0;EPP=12.7741;EPPR=37.2247;DPRA=3.06557;ODDS=77.141;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.742;Dels=0.0;FS=4.101;HaplotypeScore=8.7585;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.88;QD=12.94;ReadPosRankSum=1.016;SOR=0.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.736:117:122:4728:0:0:0.0,-33.0759,-425.513:0:0:117:112,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:117.868:374:235:8998:139:5350:-379.917,0.0,-707.992:139:37:374:225,132:38.0:0.37:2:4867,0,8914:.:1:1:.:.:1:-0.0533013
chr17	64715615	.	G	A	4488.935	REJECT	NS=2;DP=183;DPB=208.0;AC=3;AN=4;AF=0.75;RO=52;AO=156;PRO=0.0;PAO=0.0;QR=2017;QA=6070;PQR=0.0;PQA=0.0;SRF=12;SRR=40;SAF=31;SAR=125;SRP=35.7494;SAP=126.005;AB=0.672956;ABP=44.3229;RUN=1;RPP=11.028;RPPR=5.68288;RPL=90.0;RPR=66.0;EPP=3.51141;EPPR=13.7006;DPRA=0.0;ODDS=31.6119;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9359;MQMR=60.0;PAIRED=0.99359;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.163;Dels=0.0;FS=0.0;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.75;MQ=59.905;MQRankSum=0.303;QD=25.44;ReadPosRankSum=1.052;SOR=2.055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.683:48:0:0:49:1917:-172.725,-13.3029,0.0:48:100:48:0,48:2108,144,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:159:52:2017:107:4153:-330.577,0.0,-138.396:107:67:159:52,107:4167,0,1789:.:1:1:.:.:.:-0.0533013
chr17	64716307	.	C	T	1549.56	REJECT	NS=2;DP=414;DPB=462.0;AC=2;AN=4;AF=0.5;RO=374;AO=88;PRO=0.0;PAO=0.0;QR=14277;QA=3375;PQR=0.0;PQA=0.0;SRF=170;SRR=204;SAF=54;SAR=34;SRP=9.72212;SAP=12.8806;AB=0.190476;ABP=387.464;RUN=1;RPP=3.40511;RPPR=14.2509;RPL=46.0;RPR=42.0;EPP=3.40511;EPPR=4.49666;DPRA=0.0;ODDS=151.926;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977273;PAIREDR=0.991979;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8965;Dels=0.0;FS=9.648;HaplotypeScore=5.8266;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.19;QD=8.805;ReadPosRankSum=-0.8555;SOR=1.2385;ClippingRankSum=-0.654	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:52:1968:40:1525:-112.369,0.0,-152.223:39:43:91:52,39:1407,0,1841:1:.:1:.:.:.:-0.00997748	0/1:129.501:368:322:12309:48:1850:-66.2447,0.0,-1006.85:47:13:368:320,47:930,0,12582:.:1:1:.:.:.:-0.0533013
chr17	64716397	.	G	A	3061.88	PASS	SOMATIC;NS=2;DP=439;DPB=439.0;AC=1;AN=3;AF=0.25;RO=323;AO=116;PRO=0.0;PAO=0.0;QR=12408;QA=4410;PQR=0.0;PQA=0.0;SRF=159;SRR=164;SAF=49;SAR=67;SRP=3.17837;SAP=9.07545;AB=0.37299;ABP=46.5864;RUN=1;RPP=3.0103;RPPR=4.14646;RPL=58.0;RPR=58.0;EPP=6.67934;EPPR=4.52294;DPRA=2.42969;ODDS=80.8317;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.990712;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.825;Dels=0.0;FS=5.459;HaplotypeScore=5.7736;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.266;QD=12.68;ReadPosRankSum=-0.59;SOR=1.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.107:126:128:4888:0:0:0.0,-34.6788,-439.871:0:0:126:124,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:119.0535:310:195:7520:116:4410:-312.425,0.0,-592.172:115:37:310:192,113:38.0:0.369:2:3958,0,7493:.:1:1:.:.:1:-0.0533013
chr17	64716626	.	T	C	8280.78	REJECT	NS=2;DP=495;DPB=574.0;AC=2;AN=4;AF=0.5;RO=276;AO=297;PRO=0.0;PAO=0.0;QR=10606;QA=11439;PQR=0.0;PQA=0.0;SRF=155;SRR=121;SAF=160;SAR=137;SRP=12.1053;SAP=6.87801;AB=0.517422;ABP=4.52352;RUN=1;RPP=8.34028;RPPR=3.29354;RPL=162.0;RPR=135.0;EPP=3.89497;EPPR=7.54207;DPRA=0.0;ODDS=486.563;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993266;PAIREDR=0.985507;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.643;Dels=0.0;FS=0.896;HaplotypeScore=13.5855;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1145;QD=18.97;ReadPosRankSum=-0.9045;SOR=0.5885;ClippingRankSum=2.054	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.262:155:73:2832:83:3169:-242.866,0.0,-212.546:83:53:155:72,83:2966,0,2505:1:.:1:.:.:.:-0.00997748	0/1:119.262:417:203:7774:214:8270:-630.824,0.0,-586.253:213:51:416:203,212:7926,0,7464:.:1:1:.:.:.:-0.0533013
chr17	64717112	.	A	G	5092.335	REJECT	NS=2;DP=210;DPB=243.0;AC=3;AN=4;AF=0.75;RO=61;AO=182;PRO=0.0;PAO=0.0;QR=2378;QA=7050;PQR=0.0;PQA=0.0;SRF=12;SRR=49;SAF=41;SAR=141;SRP=51.7438;SAP=122.322;AB=0.657303;ABP=41.2673;RUN=1;RPP=3.43982;RPPR=7.31765;RPL=94.0;RPR=88.0;EPP=18.4731;EPPR=3.90025;DPRA=0.0;ODDS=41.5681;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989011;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.435;Dels=0.0;FS=0.0;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.901;QD=28.39;ReadPosRankSum=0.107;SOR=1.463	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:63:0:0:65:2508:-225.883,-17.6268,0.0:63:100:63:0,62:2464,186,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:178:61:2378:117:4542:-360.399,0.0,-165.707:117:66:178:61,117:4547,0,2136:.:1:1:.:.:.:-0.0533013
chr17	64717237	.	G	A	354.652	REJECT	NS=2;DP=73;DPB=73.0;AC=1;AN=4;AF=0.25;RO=56;AO=17;PRO=0.0;PAO=0.0;QR=2124;QA=660;PQR=0.0;PQA=0.0;SRF=2;SRR=54;SAF=0;SAR=17;SRP=107.861;SAP=39.9253;AB=0.7;ABP=9.95901;RUN=1;RPP=9.26925;RPPR=3.63072;RPL=5.0;RPR=12.0;EPP=9.26925;EPPR=3.63072;DPRA=0.0;ODDS=13.3946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.3529;MQMR=58.6964;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;BaseQRankSum=-1.196;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=-1.031;QD=25.84;ReadPosRankSum=-0.701;SOR=1.721;ClippingRankSum=-0.289	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6175:20:6:238:14:541:-43.3806,0.0,-16.0692:14:70:20:6,14:545,0,206:1:.:1:.:.:.:-0.00997748	0/0:58.1722:53:50:1886:3:119:0.0,-3.66215,-158.435:3:6:53:.:.:.:.:0:.:.:.:-0.0533013
chr17	64717513	.	CA	C	28.2751	REJECT	NS=2;DP=35;DPB=53.9259;AC=2;AN=2;AF=0.0;RO=9;AO=4;PRO=13.1167;PAO=10.1167;QR=323;QA=90;PQR=427.733;PQA=341.067;SRF=8;SRR=1;SAF=2;SAR=2;SRP=14.8328;SAP=3.0103;AB=0.16;ABP=28.1125;RUN=1;RPP=5.18177;RPPR=22.5536;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=14.8328;DPRA=0.0;ODDS=4.1726;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.6194:10:0:0:0:0:-2.64635,-4.97527,-23.9918:0:0:4:.:.:1:.:.:.:-0.00997748	./1:26.5882:25:9:323:4:90:-5.29078,-3.41521,-56.9769:4:21:19:.:.:1:.:.:.:-0.0533013
chr17	64717513	.	CAA	C	34.04755	REJECT	NS=2;DP=35;DPB=53.9259;AC=2;AN=4;AF=0.5;RO=9;AO=6;PRO=13.1167;PAO=9.86667;QR=323;QA=201;PQR=427.733;PQA=334.067;SRF=8;SRR=1;SAF=6;SAR=0;SRP=14.8328;SAP=16.0391;AB=0.171429;ABP=35.8306;RUN=1;RPP=3.0103;RPPR=22.5536;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=14.8328;DPRA=0.0;ODDS=4.1726;GTI=0;TYPE=del;CIGAR=1M2D24M;NUMALT=4;MEANALT=8.5;LEN=2;MQM=58.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.847;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=55.275;MQRankSum=1.08;QD=2.96;RPA=18,16;RU=A;ReadPosRankSum=0.847;SOR=1.041;STR;ClippingRankSum=0.727	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:17.3097:7:0:0:2:73:-2.64635,0.0,-27.4303:2:62:4:1,3:77,0,17:1:.:1:.:.:.:-0.00997748	0/1:62.7941:30:9:323:4:128:-5.29078,0.0,-53.5449:5:23:21:18,6:105,0,398:.:1:1:.:.:.:-0.0533013
chr17	64717531	.	AG	A	28.2751	REJECT	NS=2;DP=35;DPB=53.9259;AC=2;AN=2;AF=0.0;RO=9;AO=2;PRO=13.1167;PAO=6.45;QR=323;QA=4;PQR=427.733;PQA=203.067;SRF=8;SRR=1;SAF=2;SAR=0;SRP=14.8328;SAP=7.35324;AB=0.2;ABP=10.8276;RUN=1;RPP=7.35324;RPPR=22.5536;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=14.8328;DPRA=0.0;ODDS=4.1726;GTI=0;TYPE=del;CIGAR=19M1D7M;NUMALT=4;MEANALT=8.0;LEN=1;MQM=53.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.6194:10:0:0:2:4:-2.64635,-6.91779,-50.3339:2:50:4:.:.:1:.:.:.:-0.00997748	./1:26.5882:25:9:323:0:0:-5.29078,-17.7728,-153.031:0:0:19:.:.:1:.:.:.:-0.0533013
chr17	64717532	.	G	A	28.2751	REJECT	NS=2;DP=35;DPB=53.9259;AC=2;AN=2;AF=0.0;RO=9;AO=2;PRO=13.1167;PAO=6.45;QR=323;QA=28;PQR=427.733;PQA=203.067;SRF=8;SRR=1;SAF=2;SAR=0;SRP=14.8328;SAP=7.35324;AB=0.08;ABP=41.3151;RUN=1;RPP=7.35324;RPPR=22.5536;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=14.8328;DPRA=0.0;ODDS=4.1726;GTI=0;TYPE=snp;CIGAR=19M1X7M;NUMALT=4;MEANALT=9.0;LEN=1;MQM=50.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.6194:10:0:0:0:0:-2.64635,-6.73474,-49.9119:0:0:4:.:.:1:.:.:.:-0.00997748	./1:26.5882:25:9:323:2:28:-5.29078,-15.7914,-150.539:2:11:19:.:.:1:.:.:.:-0.0533013
chr17	64717664	.	A	C	2595.33	REJECT	NS=2;DP=172;DPB=195.0;AC=2;AN=4;AF=0.5;RO=101;AO=94;PRO=0.0;PAO=0.0;QR=3842;QA=3605;PQR=0.0;PQA=0.0;SRF=65;SRR=36;SAF=71;SAR=23;SRP=21.0916;SAP=56.2345;AB=0.482051;ABP=3.55595;RUN=1;RPP=8.9241;RPPR=6.64375;RPL=39.0;RPR=55.0;EPP=7.53805;EPPR=50.5032;DPRA=0.0;ODDS=110.972;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.131;Dels=0.0;FS=8.0515;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1755;QD=16.68;ReadPosRankSum=0.2805;SOR=1.8525;ClippingRankSum=1.516	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.693:43:25:938:19:696:-50.8096,0.0,-72.6207:19:44:43:23,19:648,0,786:1:.:1:.:.:.:-0.00997748	0/1:120.693:150:76:2904:75:2909:-220.836,0.0,-220.38:75:50:150:75,75:2818,0,2756:.:1:1:.:.:.:-0.0533013
chr17	64717818	.	C	T	1997.445	REJECT	NS=2;DP=266;DPB=312.0;AC=2;AN=4;AF=0.5;RO=221;AO=91;PRO=0.0;PAO=0.0;QR=8364;QA=3472;PQR=0.0;PQA=0.0;SRF=125;SRR=96;SAF=67;SAR=24;SRP=11.2737;SAP=47.1318;AB=0.291667;ABP=120.632;RUN=1;RPP=17.9243;RPPR=9.15134;RPL=33.0;RPR=58.0;EPP=3.60686;EPPR=4.67084;DPRA=0.0;ODDS=153.522;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989011;PAIREDR=0.99095;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.054;Dels=0.0;FS=13.482;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7165;QD=12.41;ReadPosRankSum=0.258;SOR=1.8465;ClippingRankSum=-0.238	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:36:1380:53:2013:-157.09,0.0,-100.126:53:60:89:36,53:1860,0,1283:1:.:1:.:.:.:-0.00997748	0/1:129.501:222:185:6984:38:1459:-70.8506,0.0,-567.903:38:17:222:183,38:966,0,7061:.:1:1:.:.:.:-0.0533013
chr17	64717872	.	C	T	8155.89	REJECT	NS=2;DP=317;DPB=365.0;AC=2;AN=4;AF=0.5;RO=98;AO=267;PRO=0.0;PAO=0.0;QR=3795;QA=10248;PQR=0.0;PQA=0.0;SRF=59;SRR=39;SAF=152;SAR=115;SRP=11.8735;SAP=14.1442;AB=0.731507;ABP=172.927;RUN=1;RPP=3.99438;RPPR=10.1895;RPL=128.0;RPR=139.0;EPP=3.0835;EPPR=8.68272;DPRA=0.0;ODDS=223.316;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5065;Dels=0.0;FS=2.3445;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0295;QD=24.01;ReadPosRankSum=0.4915;SOR=0.5535;ClippingRankSum=-1.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:49:1882:44:1690:-126.927,0.0,-144.21:43:47:92:48,43:1496,0,1606:1:.:1:.:.:.:-0.00997748	0/1:129.501:271:49:1913:223:8558:-696.117,0.0,-98.3902:222:82:271:49,221:8688,0,1340:.:1:1:.:.:.:-0.0533013
chr17	64718146	.	T	A	15965.699999999999	REJECT	NS=2;DP=425;DPB=484.0;AC=4;AN=4;AF=1.0;RO=1;AO=483;PRO=0.0;PAO=0.0;QR=27;QA=18395;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=258;SAR=225;SRP=5.18177;SAP=7.90623;AB=0.0;ABP=0.0;RUN=1;RPP=5.82018;RPPR=5.18177;RPL=229.0;RPR=254.0;EPP=7.90623;EPPR=5.18177;DPRA=0.0;ODDS=77.2895;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99793;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.59;Dels=0.0;FS=0.0;HaplotypeScore=3.9277;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.647;QD=28.38;ReadPosRankSum=-1.524;SOR=0.5875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3375:116:0:0:117:4448:-400.309,-31.6914,0.0:116:100:116:0,115:4753,345,0:1:.:1:.:.:.:-0.00997748	1/1:125.3375:367:1:27:366:13947:-1251.93,-96.9127,0.0:366:100:367:1,366:15484,1046,0:.:1:1:.:.:.:-0.0533013
chr17	64718170	.	A	G	7600.035	REJECT	NS=2;DP=444;DPB=502.0;AC=2;AN=4;AF=0.5;RO=235;AO=267;PRO=0.0;PAO=0.0;QR=8932;QA=10163;PQR=0.0;PQA=0.0;SRF=119;SRR=116;SAF=137;SAR=130;SRP=3.09346;SAP=3.40881;AB=0.531873;ABP=7.43976;RUN=1;RPP=3.01843;RPPR=3.01954;RPL=134.0;RPR=133.0;EPP=6.59689;EPPR=21.7219;DPRA=0.0;ODDS=319.396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996255;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5855;Dels=0.0;FS=0.945;HaplotypeScore=8.8625;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6865;QD=19.33;ReadPosRankSum=-0.521;SOR=0.794;ClippingRankSum=-0.216	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2725:114:51:1911:65:2418:-186.197,0.0,-140.588:63:55:114:51,61:2186,0,1688:1:.:1:.:.:.:-0.00997748	0/1:117.2725:386:184:7021:202:7745:-592.067,0.0,-526.929:202:52:386:184,202:7512,0,6657:.:1:1:.:.:.:-0.0533013
chr17	64718335	.	A	G	2871.66	PASS	SOMATIC;NS=2;DP=467;DPB=467.0;AC=1;AN=3;AF=0.25;RO=350;AO=116;PRO=0.0;PAO=0.0;QR=13492;QA=4339;PQR=0.0;PQA=0.0;SRF=192;SRR=158;SAF=69;SAR=47;SRP=10.1824;SAP=12.0706;AB=0.326761;ABP=95.5517;RUN=1;RPP=9.07545;RPPR=8.59409;RPL=49.0;RPR=67.0;EPP=7.80251;EPPR=21.1018;DPRA=3.16964;ODDS=70.9027;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974138;PAIREDR=0.994286;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.087;Dels=0.0;FS=3.73;HaplotypeScore=9.8228;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.442;QD=10.44;ReadPosRankSum=0.022;SOR=0.899	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:112:4349:0:0:0.0,-30.3667,-391.426:0:0:111:110,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:353:238:9143:116:4339:-294.419,0.0,-726.487:115:33:352:231,113:37.0:0.332:2:3715,0,9086:.:1:1:.:.:1:-0.0533013
chr17	64718525	.	A	G	7654.200000000001	REJECT	NS=2;DP=495;DPB=574.0;AC=2;AN=4;AF=0.5;RO=287;AO=286;PRO=0.0;PAO=0.0;QR=10855;QA=10876;PQR=0.0;PQA=0.0;SRF=141;SRR=146;SAF=156;SAR=130;SRP=3.19945;SAP=8.14287;AB=0.498258;ABP=3.02543;RUN=1;RPP=4.954;RPPR=4.28897;RPL=151.0;RPR=135.0;EPP=4.954;EPPR=3.19945;DPRA=0.0;ODDS=450.315;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996503;PAIREDR=0.996516;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.782;Dels=0.0;FS=3.279;HaplotypeScore=10.6616;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.6995;QD=18.135;ReadPosRankSum=1.6875;SOR=0.804;ClippingRankSum=0.926	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.469:155:69:2654:88:3311:-255.385,0.0,-196.288:87:56:155:66,87:2949,0,2232:1:.:1:.:.:.:-0.00997748	0/1:117.469:416:218:8201:198:7565:-567.758,0.0,-624.966:197:47:415:218,197:7177,0,7913:.:1:1:.:.:.:-0.0533013
chr17	64719084	.	A	G	2262.16	REJECT	NS=2;DP=452;DPB=516.0;AC=2;AN=4;AF=0.5;RO=407;AO=109;PRO=0.0;PAO=0.0;QR=15267;QA=4130;PQR=0.0;PQA=0.0;SRF=218;SRR=189;SAF=56;SAR=53;SRP=7.4973;SAP=3.1896;AB=0.21124;ABP=376.722;RUN=1;RPP=3.50834;RPPR=3.27173;RPL=57.0;RPR=52.0;EPP=3.03022;EPPR=8.82046;DPRA=0.0;ODDS=57.1958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981651;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.234;Dels=0.0;FS=1.801;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2345;QD=9.805;ReadPosRankSum=0.3055;SOR=0.5695;ClippingRankSum=-0.749	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:58:2157:70:2679:-206.427,0.0,-159.44:70:55:128:58,70:2393,0,2005:1:.:1:.:.:.:-0.00997748	0/1:129.501:388:349:13110:39:1451:-25.5116,0.0,-1074.07:39:10:388:349,39:470,0,13401:.:1:1:.:.:.:-0.0533013
chr17	64719284	.	A	AG	11666.8	REJECT	NS=2;DP=325;DPB=460.8;AC=4;AN=4;AF=1.0;RO=0;AO=365;PRO=15.0;PAO=23.0;QR=0;QA=13573;PQR=488.5;PQA=777.5;SRF=0;SRR=0;SAF=176;SAR=189;SRP=0.0;SAP=4.01572;AB=0.0;ABP=0.0;RUN=1;RPP=15.0575;RPPR=0.0;RPL=205.0;RPR=160.0;EPP=3.15903;EPPR=0.0;DPRA=0.0;ODDS=69.0638;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99726;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=64719284;HOMLEN=2;HOMSEQ=GG;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.25;QD=26.725;RPA=2,3;RU=G;SOR=0.7725;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.974:102:0:0:100:3650:-342.355,-28.119,0.0:105:100:105:52,132:3763,319,0:1:.:1:1:.:.:-0.00997748	1/1:122.974:275:0:0:265:9923:-904.691,-72.7908,0.0:270:100:270:137,355:10955,813,0:.:1:1:1:.:.:-0.0533013
chr17	64719727	.	C	G	3470.62	REJECT	NS=2;DP=167;DPB=186.0;AC=3;AN=4;AF=0.75;RO=56;AO=129;PRO=0.0;PAO=0.0;QR=1931;QA=4646;PQR=0.0;PQA=0.0;SRF=43;SRR=13;SAF=97;SAR=32;SRP=37.909;SAP=74.1302;AB=0.61745;ABP=20.863;RUN=1;RPP=4.37378;RPPR=5.49198;RPL=60.0;RPR=69.0;EPP=3.83512;EPPR=4.40625;DPRA=0.0;ODDS=24.0316;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9767;MQMR=58.8393;PAIRED=0.992248;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.003;Dels=0.0;FS=0.3655;HaplotypeScore=11.634;MLEAC=1;MLEAF=0.75;MQ=59.85;MQRankSum=2.014;QD=25.015;ReadPosRankSum=-1.552;SOR=1.4035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:100.6845:35:0:0:37:1305:-117.667,-10.0108,0.0:35:100:35:0,33:1251,97,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:149:56:1931:92:3341:-260.62,0.0,-133.019:92:62:148:56,92:3316,0,1655:.:1:1:.:.:.:-0.0533013
chr17	64719741	.	G	A	1353.49	PASS	SOMATIC;NS=2;DP=211;DPB=211.0;AC=1;AN=3;AF=0.25;RO=148;AO=63;PRO=0.0;PAO=0.0;QR=5331;QA=2115;PQR=0.0;PQA=0.0;SRF=100;SRR=48;SAF=47;SAR=16;SRP=42.6837;SAP=36.1339;AB=0.384146;ABP=22.1298;RUN=1;RPP=15.4532;RPPR=42.6837;RPL=22.0;RPR=41.0;EPP=4.69922;EPPR=3.94932;DPRA=3.48936;ODDS=29.3872;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.1746;MQMR=59.8446;PAIRED=1.0;PAIREDR=0.993243;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.154;Dels=0.0;FS=5.369;HaplotypeScore=12.5109;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=-1.851;QD=11.47;ReadPosRankSum=2.497;SOR=1.159	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:126.947:45:47:1637:0:0:0.0,-12.3368,-147.138:0:0:45:43,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:124.8265:164:101:3694:63:2115:-145.034,0.0,-288.385:63:38:164:96,57:35.0:0.359:2:1910,0,3663:.:1:1:.:.:1:-0.0533013
chr17	64719752	.	C	CA	1810.29	REJECT	NS=2;DP=226;DPB=300.5;AC=2;AN=2;AF=0.0;RO=67;AO=32;PRO=40.3333;PAO=36.3333;QR=2329;QA=1071;PQR=1356.25;PQA=1231.25;SRF=38;SRR=29;SAF=25;SAR=7;SRP=5.63551;SAP=24.9965;AB=0.141593;ABP=255.17;RUN=1;RPP=12.7819;RPPR=57.4916;RPL=10.0;RPR=22.0;EPP=3.28173;EPPR=4.59839;DPRA=0.0;ODDS=18.297;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=3;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.41;FS=8.762;MLEAC=1;MLEAF=0.5;MQ=59.39;MQRankSum=0.394;QD=3.77;RPA=13,14;RU=A;ReadPosRankSum=0.717;SOR=1.425;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.525:55:17:601:1:40:-105.646,-106.926,-156.184:1:2:45:.:.:.:.:1:.:.:.:-0.00997748	./1:89.23145:188:50:1728:31:1031:-87.1723,-6.18389,-161.067:47:30:151:118,64:813,0,2244:.:1:1:.:.:.:-0.0533013
chr17	64719752	.	CA	C	1810.29	PASS	SOMATIC;NS=2;DP=226;DPB=300.5;AC=2;AN=2;AF=0.0;RO=67;AO=12;PRO=40.3333;PAO=27.8333;QR=2329;QA=417;PQR=1356.25;PQA=891.25;SRF=38;SRR=29;SAF=10;SAR=2;SRP=5.63551;SAP=14.5915;AB=0.0701754;ABP=277.416;RUN=1;RPP=14.5915;RPPR=57.4916;RPL=2.0;RPR=10.0;EPP=5.9056;EPPR=4.59839;DPRA=0.0;ODDS=18.297;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=3;MEANALT=31.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.525:55:17:601:0:0:-105.646,-111.341,-173.115:0:0:45:.:.:1:.:.:.:-0.00997748	./1:79.4629:171:50:1728:12:417:-87.1723,-73.5769,-285.118:12:10:120:.:.:1:.:.:.:-0.0533013
chr17	64719760	.	A	G	1492.53	REJECT	NS=2;DP=226;DPB=300.5;AC=2;AN=4;AF=0.5;RO=67;AO=54;PRO=40.3333;PAO=39.5;QR=2329;QA=2126;PQR=1356.25;PQA=1349.25;SRF=38;SRR=29;SAF=37;SAR=17;SRP=5.63551;SAP=19.0953;AB=0.238938;ABP=136.796;RUN=1;RPP=49.4959;RPPR=57.4916;RPL=10.0;RPR=44.0;EPP=3.6537;EPPR=4.59839;DPRA=0.0;ODDS=18.297;GTI=0;TYPE=snp;CIGAR=8M1X15M;NUMALT=3;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.5535;Dels=0.0;FS=23.4565;HaplotypeScore=120.321;MLEAC=1;MLEAF=0.5;MQ=59.745;MQRankSum=-1.257;QD=11.875;ReadPosRankSum=-0.7395;SOR=1.663;ClippingRankSum=-0.826	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.2625:57:17:601:27:1063:-105.646,0.0,-71.1861:31:59:52:24,35:1203,0,704:1:.:1:.:.:.:-0.00997748	0/1:89.23145:203:50:1728:27:1063:-87.1723,0.0,-385.97:33:20:178:196,40:1012,0,7596:.:1:1:.:.:.:-0.0533013
chr17	64720413	.	C	CA	1502.18	REJECT	NS=2;DP=198;DPB=287.8;AC=2;AN=4;AF=0.5;RO=60;AO=80;PRO=39.4833;PAO=35.8167;QR=2157;QA=2490;PQR=1372.73;PQA=1234.73;SRF=39;SRR=21;SAF=53;SAR=27;SRP=14.7363;SAP=21.3592;AB=0.380952;ABP=28.8612;RUN=1;RPP=13.8677;RPPR=3.58936;RPL=30.0;RPR=50.0;EPP=5.72464;EPPR=3.15506;DPRA=0.0;ODDS=39.8281;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=4;MEANALT=15.0;LEN=1;MQM=58.55;MQMR=60.0;PAIRED=0.9875;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.7625;FS=0.873;MLEAC=1;MLEAF=0.5;MQ=59.155;MQRankSum=0.4815;QD=9.42;RPA=13,14;RU=A;ReadPosRankSum=-0.008;SOR=1.058;STR;ClippingRankSum=1.579	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.5775:59:8:290:34:1112:-88.0289,0.0,-17.8608:39:69:56:14,44:935,0,100:1:.:1:.:.:.:-0.00997748	0/1:116.5775:168:52:1867:46:1378:-116.085,0.0,-151.767:59:41:141:82,72:1087,0,1290:.:1:1:.:.:.:-0.0533013
chr17	64720413	.	C	CAA	1954.63	REJECT	NS=2;DP=210;DPB=287.8;AC=2;AN=2;AF=0.0;RO=60;AO=12;PRO=39.4833;PAO=35.8167;QR=2157;QA=351;PQR=1372.73;PQA=1240.73;SRF=39;SRR=21;SAF=4;SAR=8;SRP=14.7363;SAP=5.9056;AB=0.0571429;ABP=360.745;RUN=1;RPP=3.73412;RPPR=3.58936;RPL=7.0;RPR=5.0;EPP=9.52472;EPPR=3.15506;DPRA=0.0;ODDS=39.8281;GTI=0;TYPE=ins;CIGAR=1M2I19M;NUMALT=4;MEANALT=15.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.155:60:8:290:3:93:-88.0289,-82.9066,-109.1:3:6:54:.:.:1:.:.:.:-0.00997748	./1:134.155:150:52:1867:9:258:-116.085,-98.33,-260.826:9:7:129:.:.:1:.:.:.:-0.0533013
chr17	64720413	.	CA	C	1954.63	REJECT	NS=2;DP=210;DPB=287.8;AC=2;AN=2;AF=0.0;RO=60;AO=24;PRO=39.4833;PAO=31.9;QR=2157;QA=785;PQR=1372.73;PQA=1096.65;SRF=39;SRR=21;SAF=14;SAR=10;SRP=14.7363;SAP=4.45795;AB=0.114286;ABP=274.382;RUN=1;RPP=12.0581;RPPR=3.58936;RPL=7.0;RPR=17.0;EPP=6.26751;EPPR=3.15506;DPRA=0.0;ODDS=39.8281;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=4;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.155:60:8:290:5:151:-88.0289,-86.6296,-202.182:5:9:54:.:.:1:.:.:.:-0.00997748	./1:134.155:150:52:1867:19:634:-116.085,-83.0703,-311.931:19:15:129:.:.:1:.:.:.:-0.0533013
chr17	64720427	.	GAACT	AGAACG	1954.63	REJECT	NS=2;DP=210;DPB=287.8;AC=2;AN=2;AF=0.0;RO=60;AO=7;PRO=39.4833;PAO=11.9833;QR=2157;QA=104;PQR=1372.73;PQA=377.15;SRF=39;SRR=21;SAF=7;SAR=0;SRP=14.7363;SAP=18.2106;AB=0.0333333;ABP=400.245;RUN=1;RPP=18.2106;RPPR=3.58936;RPL=7.0;RPR=0.0;EPP=18.2106;EPPR=3.15506;DPRA=0.0;ODDS=39.8281;GTI=0;TYPE=complex;CIGAR=1M1I17M1X1M;NUMALT=4;MEANALT=15.0;LEN=21;MQM=57.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.155:60:8:290:4:60:-88.0289,-110.821,-409.186:4:7:54:.:.:1:.:.:.:-0.00997748	./1:134.155:150:52:1867:3:44:-116.085,-186.418,-1202.13:3:2:129:.:.:1:.:.:.:-0.0533013
chr17	64721750	.	A	G	4392.6	REJECT	NS=2;DP=137;DPB=161.0;AC=4;AN=4;AF=1.0;RO=2;AO=158;PRO=0.0;PAO=0.0;QR=18;QA=5387;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=35;SAR=123;SRP=7.35324;SAP=109.44;AB=0.0;ABP=0.0;RUN=1;RPP=37.369;RPPR=7.35324;RPL=104.0;RPR=54.0;EPP=66.5602;EPPR=7.35324;DPRA=0.0;ODDS=32.892;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.5886;MQMR=60.0;PAIRED=0.993671;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=12.6781;MLEAC=2;MLEAF=1.0;MQ=59.865;QD=29.65;SOR=2.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.7305:45:1:16:47:1517:-135.143,-11.5067,0.0:44:99:45:0,42:1605,125,0:1:.:1:.:.:.:-0.00997748	1/1:121.5995:113:1:2:111:3870:-348.479,-30.072,0.0:111:99:112:1,111:4207,304,0:.:1:1:.:.:.:-0.0533013
chr17	64721765	.	CA	C	97.73	PASS	SOMATIC;DP=90;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.097;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-1.04;QD=1.09;RPA=13,12;RU=A;ReadPosRankSum=0.546;SOR=0.685;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.00997748	0/1:60,16:90:99.0:135,0,1160:16:21:76:.:1:.:.:.:.:-0.0533013
chr17	64721778	.	ATTAGC	TTAGT	2817.5	REJECT	SOMATIC;NS=2;DP=94;DPB=123.263;AC=1;AN=3;AF=0.0;RO=14;AO=10;PRO=15.8333;PAO=12.5;QR=512;QA=295;PQR=530.583;PQA=404.75;SRF=6;SRR=8;SAF=4;SAR=6;SRP=3.63072;SAP=3.87889;AB=0.119403;ABP=87.3088;RUN=1;RPP=6.48466;RPPR=3.0103;RPL=7.0;RPR=3.0;EPP=16.9077;EPPR=5.49198;DPRA=0.0;ODDS=6.03284;GTI=0;TYPE=complex;CIGAR=1M1D16M1X;NUMALT=3;MEANALT=6.5;LEN=18;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.928571;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:26.2107:27:0:0:2:30:-112.45,-77.6757,-126.937:2:7:27:.:.:.:.:.:.:-0.00997748	./1:160.002:67:14:512:8:265:-175.977,-59.865,-143.286:8:15:55:.:.:1:.:.:.:-0.0533013
chr17	64721779	.	TTAGC	ATTAGT	2817.5	REJECT	SOMATIC;NS=2;DP=94;DPB=123.263;AC=1;AN=3;AF=0.0;RO=14;AO=8;PRO=15.8333;PAO=12.3333;QR=512;QA=155;PQR=530.583;PQA=423.583;SRF=6;SRR=8;SAF=1;SAR=7;SRP=3.63072;SAP=12.7819;AB=0.0746269;ABP=108.311;RUN=1;RPP=7.35324;RPPR=3.0103;RPL=6.0;RPR=2.0;EPP=12.7819;EPPR=5.49198;DPRA=0.0;ODDS=6.03284;GTI=0;TYPE=complex;CIGAR=1M1I17M1X;NUMALT=3;MEANALT=6.5;LEN=20;MQM=57.5;MQMR=60.0;PAIRED=1.0;PAIREDR=0.928571;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:26.2107:27:0:0:3:62:-112.45,-67.2114,-90.4179:3:11:27:.:.:.:.:.:.:-0.00997748	./1:160.002:67:14:512:5:93:-175.977,-76.8809,-152.246:5:9:55:.:.:1:.:.:.:-0.0533013
chr17	64721783	.	C	T	2493.135	REJECT	NS=2;DP=91;DPB=123.263;AC=3;AN=4;AF=0.75;RO=14;AO=50;PRO=15.8333;PAO=16.3333;QR=512;QA=1728;PQR=530.583;PQA=577.083;SRF=6;SRR=8;SAF=25;SAR=25;SRP=3.63072;SAP=3.0103;AB=0.41791;ABP=6.93191;RUN=1;RPP=14.1282;RPPR=3.0103;RPL=17.0;RPR=33.0;EPP=11.5225;EPPR=5.49198;DPRA=0.0;ODDS=6.03284;GTI=0;TYPE=snp;CIGAR=18M1X;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.928571;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.787;Dels=0.0;FS=0.0;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.75;MQ=59.75;MQRankSum=-1.24;QD=26.135;ReadPosRankSum=-0.054;SOR=0.74	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:62.10535:29:0:0:22:742:-112.45,-10.5233,0.0:27:90:29:0,32:1221,98,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:77:14:512:28:986:-175.977,0.0,-38.2967:44:60:71:27,61:2197,0,778:.:1:1:.:.:.:-0.0533013
chr17	64721928	.	G	A	1325.99	REJECT	NS=2;DP=204;DPB=266.13;AC=2;AN=2;AF=0.0;RO=43;AO=7;PRO=27.85;PAO=18.9167;QR=1553;QA=119;PQR=948.217;PQA=617.083;SRF=32;SRR=11;SAF=1;SAR=6;SRP=25.2805;SAP=10.7656;AB=0.0343137;ABP=387.276;RUN=1;RPP=3.32051;RPPR=14.3727;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=3.46479;DPRA=0.0;ODDS=13.6092;GTI=0;TYPE=snp;CIGAR=1X22M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:58.6695:45:10:367:3:63:-32.8558,-40.7363,-178.675:3:7:43:.:.:1:.:.:.:-0.00997748	./1:90.7727:159:33:1186:4:56:-110.753,-136.593,-468.492:4:3:141:.:.:1:.:.:.:-0.0533013
chr17	64721928	.	G	GA	931.86	REJECT	NS=2;DP=194;DPB=266.13;AC=2;AN=2;AF=0.375;RO=43;AO=48;PRO=27.85;PAO=27.85;QR=1553;QA=1511;PQR=948.217;PQA=949.217;SRF=32;SRR=11;SAF=36;SAR=12;SRP=25.2805;SAP=29.068;AB=0.235294;ABP=127.167;RUN=1;RPP=17.6677;RPPR=14.3727;RPL=15.0;RPR=33.0;EPP=4.6389;EPPR=3.46479;DPRA=0.0;ODDS=13.6092;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.9075;FS=3.1325;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-0.8915;QD=6.4;RPA=15,16;RU=A;ReadPosRankSum=0.6615;SOR=1.024;STR;ClippingRankSum=1.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.83475:45:10:367:14:409:-32.8558,0.0,-29.0898:18:41:44:7,22:571,216,416:1:.:1:.:.:.:-0.00997748	./1:94.88635:171:33:1186:34:1102:-110.753,-23.8111,-118.203:46:29:152:106,58:575,0,1063:.:1:1:.:.:.:-0.0533013
chr17	64721928	.	G	GAA	1325.99	REJECT	NS=2;DP=204;DPB=266.13;AC=2;AN=2;AF=0.0;RO=43;AO=14;PRO=27.85;PAO=24.85;QR=1553;QA=431;PQR=948.217;PQA=837.217;SRF=32;SRR=11;SAF=9;SAR=5;SRP=25.2805;SAP=5.49198;AB=0.0686275;ABP=332.733;RUN=1;RPP=3.63072;RPPR=14.3727;RPL=6.0;RPR=8.0;EPP=3.0103;EPPR=3.46479;DPRA=0.0;ODDS=13.6092;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=59.8571;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:58.6695:45:10:367:3:85:-32.8558,-28.9961,-61.3098:3:7:43:.:.:1:.:.:.:-0.00997748	./1:90.7727:159:33:1186:11:346:-110.753,-92.0823,-193.209:11:8:141:.:.:1:.:.:.:-0.0533013
chr17	64721928	.	GA	G	1325.99	REJECT	NS=2;DP=204;DPB=266.13;AC=2;AN=3;AF=0.25;RO=43;AO=59;PRO=27.85;PAO=22.7667;QR=1553;QA=1898;PQR=948.217;PQA=755.133;SRF=32;SRR=11;SAF=45;SAR=14;SRP=25.2805;SAP=38.3795;AB=0.289216;ABP=81.7368;RUN=1;RPP=13.6468;RPPR=14.3727;RPL=21.0;RPR=38.0;EPP=9.23028;EPPR=3.46479;DPRA=0.0;ODDS=13.6092;GTI=0;TYPE=del;CIGAR=1M1D21M;NUMALT=5;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983051;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=2.54;FS=3.951;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-1.648;QD=9.88;ReadPosRankSum=1.648;SOR=1.645;ClippingRankSum=1.222	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:78.83475:45:10:367:12:351:-32.8558,-7.31287,-67.3045:14:32:44:7,16:571,319,629:1:.:1:.:.:.:-0.00997748	0/1:90.7727:159:33:1186:47:1547:-110.753,0.0,-163.517:47:33:141:.:.:.:.:1:.:.:.:-0.0533013
chr17	64721928	.	GAA	G	1325.99	REJECT	NS=2;DP=204;DPB=266.13;AC=2;AN=2;AF=0.0;RO=43;AO=13;PRO=27.85;PAO=22.7667;QR=1553;QA=470;PQR=948.217;PQA=755.133;SRF=32;SRR=11;SAF=11;SAR=2;SRP=25.2805;SAP=16.5402;AB=0.0637255;ABP=340.27;RUN=1;RPP=3.17734;RPPR=14.3727;RPL=6.0;RPR=7.0;EPP=3.17734;EPPR=3.46479;DPRA=0.0;ODDS=13.6092;GTI=0;TYPE=del;CIGAR=1M2D20M;NUMALT=5;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:58.6695:45:10:367:1:37:-32.8558,-35.4895,-98.3159:1:2:43:.:.:1:.:.:.:-0.00997748	./1:90.7727:159:33:1186:12:433:-110.753,-87.8831,-260.531:12:9:141:.:.:1:.:.:.:-0.0533013
chr17	64722145	.	A	G	16487.199999999997	REJECT	NS=2;DP=435;DPB=500.0;AC=4;AN=4;AF=1.0;RO=0;AO=499;PRO=0.0;PAO=0.0;QR=0;QA=19132;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=250;SAR=249;SRP=0.0;SAP=3.01465;AB=0.0;ABP=0.0;RUN=1;RPP=4.92938;RPPR=0.0;RPL=260.0;RPR=239.0;EPP=3.22353;EPPR=0.0;DPRA=0.0;ODDS=84.7961;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.98998;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9304;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=34.625;SOR=0.882	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9805:127:0:0:129:4952:-445.626,-34.9514,0.0:127:100:127:0,125:5193,376,0:1:.:1:.:.:.:-0.00997748	1/1:124.9805:370:0:0:370:14180:-1275.39,-100.217,0.0:369:100:369:0,369:15838,1102,0:.:1:1:.:.:.:-0.0533013
chr17	64722212	.	T	C	11008.085	REJECT	NS=2;DP=436;DPB=504.0;AC=3;AN=4;AF=0.75;RO=111;AO=392;PRO=0.0;PAO=0.0;QR=4239;QA=14959;PQR=0.0;PQA=0.0;SRF=59;SRR=52;SAF=214;SAR=178;SRP=3.96888;SAP=10.1895;AB=0.699187;ABP=130.174;RUN=1;RPP=5.6914;RPPR=3.18637;RPL=185.0;RPR=207.0;EPP=4.80509;EPPR=5.3774;DPRA=0.0;ODDS=84.511;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.0306;MQMR=59.9369;PAIRED=0.997449;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.327;Dels=0.0;FS=0.9365;HaplotypeScore=5.7969;MLEAC=1;MLEAF=0.75;MQ=59.65;MQRankSum=-1.362;QD=31.43;ReadPosRankSum=-1.362;SOR=0.839	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:134:5087:-457.087,-36.2767,0.0:127:100:127:0,120:5184,322,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:369:111:4239:258:9872:-778.581,0.0,-281.472:258:70:369:111,258:9760,0,3632:.:1:1:.:.:.:-0.0533013
chr17	64722235	.	CGCAGGTGTGCAGGACAGAAAGCTCAGGTGTTT	C	3730.73	PASS	DP=107;AC=2;AN=4;AF=1.0;BaseQRankSum=-0.086;FS=2.332;MLEAC=2;MLEAF=1.0;MQ=58.14;MQRankSum=1.549;QD=34.87;ReadPosRankSum=1.205;SOR=0.719;ClippingRankSum=1.14	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:3,91:94:99.0:3768,137,0:91:97:94:1:.:.:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0533013
chr17	64722267	.	T	C	9583.04	REJECT	NS=2;DP=362;DPB=362.0;AC=4;AN=4;AF=1.0;RO=1;AO=361;PRO=0.0;PAO=0.0;QR=30;QA=12837;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=190;SAR=171;SRP=5.18177;SAP=5.18177;AB=0.0;ABP=0.0;RUN=1;RPP=183.038;RPPR=5.18177;RPL=267.0;RPR=94.0;EPP=4.36371;EPPR=5.18177;DPRA=0.0;ODDS=56.43;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=47.4183;MQMR=18.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=49;BaseQRankSum=1.323;Dels=0.0;FS=0.0;HaplotypeScore=13.9045;MLEAC=2;MLEAF=1.0;MQ=46.71;MQRankSum=1.246;QD=27.41;ReadPosRankSum=1.297;SOR=0.275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:142.831:89:0:0:89:3153:-249.471,-22.6322,0.0:89:100:89:.:.:.:.:1:.:.:.:-0.00997748	1/1:120.9155:297:1:30:272:9684:-731.12,-62.8516,0.0:296:100:297:1,320:8826,639,0:.:1:1:.:.:.:-0.0533013
chr17	64722845	.	C	CT	28.2376	REJECT	NS=2;DP=125;DPB=152.579;AC=2;AN=2;AF=0.0;RO=75;AO=16;PRO=19.4167;PAO=18.4167;QR=2723;QA=269;PQR=660.417;PQA=623.417;SRF=18;SRR=57;SAF=3;SAR=13;SRP=47.0478;SAP=16.582;AB=0.128;ABP=153.259;RUN=1;RPP=3.55317;RPPR=18.3264;RPL=9.0;RPR=7.0;EPP=5.18177;EPPR=3.27088;DPRA=0.0;ODDS=4.75924;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=57.9375;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:23.2361:28:14:496:5:97:-5.03437,-1.71372,-44.4338:5:21:24:.:.:1:.:.:.:-0.00997748	./1:20.0174:97:61:2227:11:172:-2.62641,-3.95431,-188.842:11:13:86:.:.:1:.:.:.:-0.0533013
chr17	64722845	.	CT	C	28.2376	REJECT	NS=2;DP=125;DPB=152.579;AC=2;AN=4;AF=0.5;RO=75;AO=13;PRO=19.4167;PAO=16.9167;QR=2723;QA=361;PQR=660.417;PQA=546.417;SRF=18;SRR=57;SAF=5;SAR=8;SRP=47.0478;SAP=4.51363;AB=0.104;ABP=173.271;RUN=1;RPP=7.18621;RPPR=18.3264;RPL=9.0;RPR=4.0;EPP=3.17734;EPPR=3.27088;DPRA=0.0;ODDS=4.75924;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:23.2361:28:14:496:4:119:-5.03437,0.0,-49.265:4:17:24:.:.:1:.:.:.:-0.00997748	0/1:20.0174:97:61:2227:9:242:-2.62641,0.0,-196.845:9:10:86:.:.:1:.:.:.:-0.0533013
chr17	64722845	.	CTT	C	28.2376	REJECT	NS=2;DP=125;DPB=152.579;AC=2;AN=2;AF=0.0;RO=75;AO=6;PRO=19.4167;PAO=15.25;QR=2723;QA=170;PQR=660.417;PQA=504.75;SRF=18;SRR=57;SAF=1;SAR=5;SRP=47.0478;SAP=8.80089;AB=0.048;ABP=224.831;RUN=1;RPP=4.45795;RPPR=18.3264;RPL=4.0;RPR=2.0;EPP=8.80089;EPPR=3.27088;DPRA=0.0;ODDS=4.75924;GTI=0;TYPE=del;CIGAR=1M2D16M;NUMALT=3;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986667;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:23.2361:28:14:496:1:38:-5.03437,-6.49609,-56.5634:1:4:24:.:.:1:.:.:.:-0.00997748	./1:20.0174:97:61:2227:5:132:-2.62641,-11.3482,-252.311:5:6:86:.:.:1:.:.:.:-0.0533013
chr17	64722900	.	T	G	1483.11	REJECT	NS=2;DP=108;DPB=121.0;AC=2;AN=4;AF=0.5;RO=61;AO=60;PRO=0.0;PAO=0.0;QR=2274;QA=2131;PQR=0.0;PQA=0.0;SRF=18;SRR=43;SAF=11;SAR=49;SRP=25.259;SAP=55.2704;AB=0.495868;ABP=3.02825;RUN=1;RPP=3.15506;RPPR=3.0459;RPL=29.0;RPR=31.0;EPP=3.0103;EPPR=18.709;DPRA=0.0;ODDS=64.129;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7833;MQMR=59.9836;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.905;Dels=0.0;FS=5.5885;HaplotypeScore=5.9285;MLEAC=1;MLEAF=0.5;MQ=59.935;MQRankSum=0.8355;QD=16.41;ReadPosRankSum=-1.14;SOR=2.258;ClippingRankSum=1.752	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:26:11:400:15:504:-38.451,0.0,-29.0775:15:58:26:11,16:501,0,371:1:.:1:.:.:.:-0.00997748	0/1:129.501:95:50:1874:45:1627:-120.681,0.0,-143.357:45:47:95:50,45:1543,0,1815:.:1:1:.:.:.:-0.0533013
chr17	64723014	.	G	A	1416.87	REJECT	NS=2;DP=91;DPB=102.0;AC=2;AN=4;AF=0.5;RO=49;AO=53;PRO=0.0;PAO=0.0;QR=1815;QA=2006;PQR=0.0;PQA=0.0;SRF=33;SRR=16;SAF=38;SAR=15;SRP=15.8176;SAP=24.6841;AB=0.519608;ABP=3.35092;RUN=1;RPP=21.0786;RPPR=6.59988;RPL=16.0;RPR=37.0;EPP=24.6841;EPPR=5.18177;DPRA=0.0;ODDS=52.4381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6335;Dels=0.0;FS=2.0965;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9655;QD=16.615;ReadPosRankSum=-0.6225;SOR=1.2395;ClippingRankSum=0.626	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:22:12:440:10:355:-26.105,0.0,-33.7878:10:45:22:12,10:326,0,420:1:.:1:.:.:.:-0.00997748	0/1:129.501:80:37:1375:43:1651:-126.984,0.0,-102.121:43:54:80:37,43:1604,0,1280:.:1:1:.:.:.:-0.0533013
chr17	64723320	.	GA	G	11195.25	REJECT	NS=2;DP=327;DPB=348.9;AC=4;AN=4;AF=1.0;RO=0;AO=362;PRO=25.5;PAO=30.5;QR=0;QA=13191;PQR=793.5;PQA=983.5;SRF=0;SRR=0;SAF=199;SAR=163;SRP=0.0;SAP=10.7844;AB=0.0;ABP=0.0;RUN=1;RPP=4.54593;RPPR=0.0;RPL=173.0;RPR=189.0;EPP=13.5917;EPPR=0.0;DPRA=0.0;ODDS=63.5549;GTI=0;TYPE=del;CIGAR=1M1D8M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.221;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.375;QD=33.865;RPA=5,4;RU=A;SOR=0.9215;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.2595:94:0:0:94:3430:-311.849,-25.7265,0.0:94:100:94:0,94:3379,283,0:1:.:1:.:.:.:-0.00997748	1/1:124.2595:280:0:0:268:9761:-891.955,-73.5252,0.0:270:100:270:0,272:10451,819,0:.:1:1:.:.:.:-0.0533013
chr17	64723342	.	A	G	1459.1799999999998	REJECT	NS=2;DP=362;DPB=406.0;AC=2;AN=4;AF=0.5;RO=323;AO=82;PRO=0.0;PAO=0.0;QR=12290;QA=3151;PQR=0.0;PQA=0.0;SRF=180;SRR=143;SAF=55;SAR=27;SRP=12.2138;SAP=23.7717;AB=0.20197;ABP=316.237;RUN=1;RPP=9.78953;RPPR=8.6642;RPL=33.0;RPR=49.0;EPP=5.65844;EPPR=7.91124;DPRA=0.0;ODDS=185.651;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.3659;MQMR=60.1548;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4925;Dels=0.0;FS=6.7325;HaplotypeScore=9.7613;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.6735;QD=7.75;ReadPosRankSum=0.3105;SOR=1.2515;ClippingRankSum=-0.15	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:57:2135:30:1174:-82.1357,0.0,-168.629:30:34:86:56,30:1021,0,2020:1:.:1:.:.:.:-0.00997748	0/1:129.501:319:266:10155:52:1977:-91.7215,0.0,-827.296:52:16:318:266,52:1293,0,10365:.:1:1:.:.:.:-0.0533013
chr17	64723450	.	G	A	2829.81	PASS	SOMATIC;NS=2;DP=463;DPB=463.0;AC=1;AN=3;AF=0.25;RO=350;AO=113;PRO=0.0;PAO=0.0;QR=13242;QA=4286;PQR=0.0;PQA=0.0;SRF=155;SRR=195;SAF=60;SAR=53;SRP=12.937;SAP=3.95191;AB=0.316527;ABP=107.393;RUN=1;RPP=3.95191;RPPR=6.58392;RPL=53.0;RPR=60.0;EPP=7.33403;EPPR=3.63072;DPRA=3.36792;ODDS=67.0522;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991429;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.157;Dels=0.0;FS=8.712;HaplotypeScore=2.8517;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.259;QD=10.36;ReadPosRankSum=0.891;SOR=0.619	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.197:104:106:3982:0:0:0.0,-28.6944,-358.387:0:0:104:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:120.0985:356:244:9260:113:4286:-288.849,0.0,-736.236:113:32:356:232,109:37.0:0.323:2:3716,0,9275:.:1:1:.:.:1:-0.0533013
chr17	64723758	.	A	AT	1665.64	REJECT	NS=2;DP=408;DPB=442.625;AC=2;AN=4;AF=0.5;RO=319;AO=87;PRO=26.0;PAO=20.0;QR=12069;QA=3128;PQR=907.0;PQA=701.0;SRF=176;SRR=143;SAF=49;SAR=38;SRP=10.4233;SAP=6.03039;AB=0.213235;ABP=294.435;RUN=1;RPP=3.03526;RPPR=3.07156;RPL=43.0;RPR=44.0;EPP=3.03526;EPPR=7.97269;DPRA=0.0;ODDS=102.533;GTI=0;TYPE=ins;CIGAR=1M1I7M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977011;PAIREDR=0.996865;technology.ILLUMINA=1.0;BaseQRankSum=-1.239;FS=6.613;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.027;QD=12.08;ReadPosRankSum=-0.442;SOR=1.01;ClippingRankSum=-0.254	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:49:1878:48:1676:-127.373,0.0,-142.554:46:48:94:48,44:1185,0,1288:1:.:1:.:.:.:-0.00997748	0/1:160.002:311:270:10191:39:1452:-45.0035,0.0,-852.734:39:13:309:.:.:.:.:1:.:.:.:-0.0533013
chr17	64723927	.	G	A	2989.2700000000004	PASS	DP=190;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.68;Dels=0.0;FS=3.9025;HaplotypeScore=6.8978;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3895;QD=16.115;ReadPosRankSum=-1.3405;SOR=0.74;ClippingRankSum=-0.73	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:49,40:89:99.0:1526,0,2950:40:45:89:1:.:.:.:.:.:-0.00997748	0/1:166,125:291:99.0:4509,0,6239:125:43:291:.:1:.:.:.:.:-0.0533013
chr17	64723927	.	GCCAA	ACCAG	5023.69	REJECT	NS=2;DP=362;DPB=382.0;AC=2;AN=4;AF=0.5;RO=207;AO=152;PRO=22.0;PAO=18.0;QR=7826;QA=5737;PQR=556.0;PQA=642.0;SRF=103;SRR=104;SAF=71;SAR=81;SRP=3.02079;SAP=4.4389;AB=0.41989;ABP=23.1894;RUN=1;RPP=8.7247;RPPR=3.86001;RPL=66.0;RPR=86.0;EPP=4.4389;EPPR=3.27256;DPRA=0.0;ODDS=277.296;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=1;MEANALT=2.5;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=0.993421;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:138.629:87:49:1844:37:1388:-121.643,0.0,-147.379:37:43:86:.:.:1:.:.:.:-0.00997748	0/1:138.629:275:158:5982:115:4349:-387.45,0.0,-498.691:115:42:273:.:.:1:.:.:.:-0.0533013
chr17	64723931	.	A	G	2986.2700000000004	PASS	DP=193;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.26;Dels=0.0;FS=5.1865;HaplotypeScore=8.8638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.381;QD=15.745;ReadPosRankSum=-0.735;SOR=0.8325;ClippingRankSum=-0.407	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,40:93:99.0:1541,0,3010:40:43:93:1:.:.:.:.:.:-0.00997748	0/1:169,124:293:99.0:4488,0,6299:124:42:293:.:1:.:.:.:.:-0.0533013
chr17	64724614	.	G	C	13707.65	REJECT	NS=2;DP=366;DPB=419.0;AC=4;AN=4;AF=1.0;RO=0;AO=419;PRO=0.0;PAO=0.0;QR=0;QA=15856;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=199;SRP=0.0;SAP=5.29579;AB=0.0;ABP=0.0;RUN=1;RPP=17.568;RPPR=0.0;RPL=183.0;RPR=236.0;EPP=3.05694;EPPR=0.0;DPRA=0.0;ODDS=69.79;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99284;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.685;SOR=0.793	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.064:104:0:0:105:3958:-356.241,-28.4344,0.0:104:100:104:0,104:4250,312,0:1:.:1:.:.:.:-0.00997748	1/1:127.064:314:0:0:314:11898:-1070.13,-84.9841,0.0:314:100:314:0,314:13239,921,0:.:1:1:.:.:.:-0.0533013
chr17	64724724	.	A	G	2907.675	REJECT	NS=2;DP=455;DPB=525.0;AC=2;AN=4;AF=0.5;RO=391;AO=134;PRO=0.0;PAO=0.0;QR=14855;QA=5133;PQR=0.0;PQA=0.0;SRF=218;SRR=173;SAF=65;SAR=69;SRP=14.2564;SAP=3.26958;AB=0.255238;ABP=276.198;RUN=1;RPP=13.9649;RPPR=16.3446;RPL=54.0;RPR=80.0;EPP=15.715;EPPR=4.6153;DPRA=0.0;ODDS=206.774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985075;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.1435;Dels=0.0;FS=5.519;HaplotypeScore=4.8771;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7035;QD=11.325;ReadPosRankSum=-0.653;SOR=0.585;ClippingRankSum=-0.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:139:63:2382:77:2950:-227.519,0.0,-176.439:76:55:139:63,76:2729,0,2160:1:.:1:.:.:.:-0.00997748	0/1:129.501:385:328:12473:57:2183:-92.1169,0.0,-1017.56:57:15:385:328,57:1320,0,12737:.:1:1:.:.:.:-0.0533013
chr17	64724943	.	T	C	3711.88	PASS	SOMATIC;NS=2;DP=503;DPB=503.0;AC=1;AN=3;AF=0.25;RO=363;AO=140;PRO=0.0;PAO=0.0;QR=13772;QA=5343;PQR=0.0;PQA=0.0;SRF=180;SRR=183;SAF=73;SAR=67;SRP=3.06414;SAP=3.56868;AB=0.367454;ABP=61.1499;RUN=1;RPP=9.21451;RPPR=3.73412;RPL=60.0;RPR=80.0;EPP=4.56135;EPPR=3.73412;DPRA=3.12295;ODDS=77.0824;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986226;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.714;Dels=0.0;FS=2.843;HaplotypeScore=3.9323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.069;QD=12.69;ReadPosRankSum=1.15;SOR=0.726	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:119:122:4643:0:0:0.0,-33.0505,-417.841:0:0:119:116,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:380:241:9129:140:5343:-377.406,0.0,-718.279:140:37:380:235,135:38.0:0.363:2:4850,0,8976:.:1:1:.:.:1:-0.0533013
chr17	64725031	.	A	G	10978.985	REJECT	NS=2;DP=476;DPB=553.0;AC=3;AN=4;AF=0.75;RO=154;AO=399;PRO=0.0;PAO=0.0;QR=5909;QA=15285;PQR=0.0;PQA=0.0;SRF=79;SRR=75;SAF=195;SAR=204;SRP=3.23591;SAP=3.45113;AB=0.614035;ABP=48.0779;RUN=1;RPP=10.4608;RPPR=3.91273;RPL=181.0;RPR=218.0;EPP=3.14636;EPPR=4.42035;DPRA=0.0;ODDS=97.0156;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997494;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.037;Dels=0.0;FS=0.1865;HaplotypeScore=4.9233;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-2.295;QD=27.235;ReadPosRankSum=0.729;SOR=0.7515	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.443:152:0:0:154:5865:-527.716,-41.7074,0.0:152:100:152:0,150:6108,451,0:1:.:1:.:.:.:-0.00997748	0/1:117.443:399:154:5909:245:9420:-739.18,0.0,-423.37:245:61:399:154,245:9386,0,5410:.:1:1:.:.:.:-0.0533013
chr17	64725479	.	A	G	2918.865	REJECT	NS=2;DP=138;DPB=160.0;AC=3;AN=4;AF=0.75;RO=44;AO=116;PRO=0.0;PAO=0.0;QR=1706;QA=4260;PQR=0.0;PQA=0.0;SRF=35;SRR=9;SAF=95;SAR=21;SRP=36.372;SAP=105.519;AB=0.623932;ABP=18.6189;RUN=1;RPP=5.70592;RPPR=3.0103;RPL=52.0;RPR=64.0;EPP=9.07545;EPPR=3.20771;DPRA=0.0;ODDS=27.8296;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.431;MQMR=59.6818;PAIRED=0.991379;PAIREDR=0.977273;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.543;Dels=0.0;FS=0.0;HaplotypeScore=10.6537;MLEAC=1;MLEAF=0.75;MQ=59.495;MQRankSum=-0.042;QD=24.405;ReadPosRankSum=-1.134;SOR=2.041	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:109.911:42:0:0:43:1614:-145.081,-11.6603,0.0:42:100:42:0,42:1766,126,0:1:.:1:.:.:.:-0.00997748	0/1:129.501:117:44:1706:73:2646:-206.435,0.0,-121.868:73:62:117:44,73:2522,0,1585:.:1:1:.:.:.:-0.0533013
chr17	64725765	.	T	C	11838.15	REJECT	NS=2;DP=309;DPB=346.0;AC=4;AN=4;AF=1.0;RO=0;AO=346;PRO=0.0;PAO=0.0;QR=0;QA=13347;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=140;SAR=206;SRP=0.0;SAP=30.3483;AB=0.0;ABP=0.0;RUN=1;RPP=24.1225;RPPR=0.0;RPL=202.0;RPR=144.0;EPP=4.24038;EPPR=0.0;DPRA=0.0;ODDS=49.2934;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985549;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.804;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.035;SOR=1.111	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:70:0:0:72:2809:-252.956,-19.5328,0.0:70:100:70:0,68:2961,205,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:273:0:0:274:10538:-947.877,-74.2149,0.0:273:100:273:0,273:11787,816,0:.:1:1:.:.:.:-0.0533013
chr17	64725898	.	C	CT	33.77	PASS	DP=22;AC=1;AN=4;AF=0.5;BaseQRankSum=0.55;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.24;MQRankSum=-1.3;QD=1.53;ReadPosRankSum=0.55;SOR=0.368;ClippingRankSum=-0.55	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:3,4:7:21.0:71,0,21:4:57:7:1:.:.:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0533013
chr17	64725975	.	C	T	61.0479	REJECT	NS=2;DP=82;DPB=83.0;AC=2;AN=2;AF=0.0;RO=76;AO=3;PRO=1.0;PAO=0.5;QR=2556;QA=48;PQR=16.5;PQA=0.0;SRF=29;SRR=47;SAF=0;SAR=3;SRP=12.2676;SAP=9.52472;AB=0.0833333;ABP=39.2015;RUN=1;RPP=9.52472;RPPR=3.46745;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=3.12459;DPRA=0.0;ODDS=14.0568;GTI=0;TYPE=snp;CIGAR=1X1M;NUMALT=2;MEANALT=1.5;LEN=1;MQM=55.3333;MQMR=58.7237;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:61.0479:24:22:733:2:32:-7.97986,-12.113,-75.716:2:8:24:.:.:1:.:.:.:-0.00997748	./1:136.525:58:54:1823:1:16:0.0,-13.4121,-162.761:1:2:58:.:.:1:.:.:.:-0.0533013
chr17	64725976	.	C	T	61.0479	REJECT	NS=2;DP=82;DPB=83.0;AC=2;AN=3;AF=0.25;RO=76;AO=3;PRO=1.0;PAO=0.5;QR=2556;QA=48;PQR=16.5;PQA=16.5;SRF=29;SRR=47;SAF=0;SAR=3;SRP=12.2676;SAP=9.52472;AB=0.0;ABP=0.0;RUN=1;RPP=9.52472;RPPR=3.46745;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=3.12459;DPRA=0.0;ODDS=14.0568;GTI=0;TYPE=snp;CIGAR=1M1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=58.7237;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:61.0479:24:22:733:0:0:-7.97986,0.0,-58.3046:0:0:24:.:.:1:.:.:.:-0.00997748	./1:136.525:58:54:1823:3:48:0.0,-11.0691,-159.895:3:5:58:.:.:1:.:.:.:-0.0533013
chr17	64726023	.	T	C	2346.4449999999997	REJECT	NS=2;DP=71;DPB=84.0;AC=4;AN=4;AF=1.0;RO=0;AO=84;PRO=0.0;PAO=0.0;QR=0;QA=2970;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=41;SAR=43;SRP=0.0;SAP=3.1137;AB=0.0;ABP=0.0;RUN=1;RPP=4.66476;RPPR=0.0;RPL=38.0;RPR=46.0;EPP=3.94093;EPPR=0.0;DPRA=0.0;ODDS=20.5285;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=51.7143;MQMR=0.0;PAIRED=0.988095;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=51.925;QD=30.6;SOR=0.9435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:80.577:25:0:0:26:919:-79.8997,-7.04034,0.0:25:100:25:0,24:975,72,0:1:.:1:.:.:.:-0.00997748	1/1:124.361:58:0:0:58:2051:-178.663,-15.5561,0.0:58:100:58:0,58:2170,154,0:.:1:1:.:.:.:-0.0533013
chr17	64726049	.	T	C	2489.84	REJECT	NS=2;DP=75;DPB=90.0;AC=4;AN=4;AF=1.0;RO=1;AO=89;PRO=0.0;PAO=0.0;QR=16;QA=3151;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=54;SAR=35;SRP=5.18177;SAP=11.8182;AB=0.0;ABP=0.0;RUN=1;RPP=11.8182;RPPR=5.18177;RPL=35.0;RPR=54.0;EPP=36.4119;EPPR=5.18177;DPRA=0.0;ODDS=21.7467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=52.4944;MQMR=40.0;PAIRED=0.977528;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.505;Dels=0.0;FS=0.0;HaplotypeScore=3.866;MLEAC=2;MLEAF=1.0;MQ=53.255;MQRankSum=1.562;QD=30.805;ReadPosRankSum=-0.028;SOR=1.0575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:87.22245:27:0:0:28:949:-84.2547,-7.56943,0.0:27:100:27:0,27:1028,80,0:1:.:1:.:.:.:-0.00997748	1/1:122.0935:61:1:16:61:2202:-189.713,-15.2342,0.0:60:98:61:1,60:2343,169,0:.:1:1:.:.:.:-0.0533013
chr17	64726462	.	T	C	3820.0299999999997	REJECT	NS=2;DP=262;DPB=308.0;AC=2;AN=4;AF=0.5;RO=162;AO=146;PRO=0.0;PAO=0.0;QR=6107;QA=5556;PQR=0.0;PQA=0.0;SRF=47;SRR=115;SAF=47;SAR=99;SRP=64.9911;SAP=43.2272;AB=0.474026;ABP=4.81516;RUN=1;RPP=13.0645;RPPR=16.7362;RPL=86.0;RPR=60.0;EPP=5.15203;EPPR=9.49791;DPRA=0.0;ODDS=289.133;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993151;PAIREDR=0.993827;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2835;Dels=0.0;FS=4.1095;HaplotypeScore=6.8362;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3215;QD=16.76;ReadPosRankSum=0.967;SOR=0.744;ClippingRankSum=0.512	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3365:91:47:1759:44:1706:-128.906,0.0,-133.695:44:48:91:47,44:1567,0,1708:1:.:1:.:.:.:-0.00997748	0/1:119.3365:216:115:4348:102:3850:-287.565,0.0,-332.416:101:47:216:115,101:3615,0,4238:.:1:1:.:.:.:-0.0533013
chr17	64726790	.	A	G	3554.66	PASS	SOMATIC;NS=2;DP=481;DPB=481.0;AC=1;AN=3;AF=0.25;RO=347;AO=133;PRO=0.0;PAO=0.0;QR=13360;QA=5118;PQR=0.0;PQA=0.0;SRF=204;SRR=143;SAF=78;SAR=55;SRP=26.2957;SAP=11.6472;AB=0.365385;ABP=60.3038;RUN=1;RPP=3.41847;RPPR=9.82509;RPL=64.0;RPR=69.0;EPP=3.02663;EPPR=9.82509;DPRA=3.11111;ODDS=73.3458;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992481;PAIREDR=0.997118;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.22;Dels=0.0;FS=1.309;HaplotypeScore=3.9318;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.098;QD=12.6;ReadPosRankSum=0.361;SOR=0.614	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:146.122:113:116:4450:0:0:0.0,-31.4277,-400.485:0:0:112:109,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:122.561:364:231:8910:133:5118:-361.727,0.0,-702.8:133:37:364:223,126:38.0:0.358:2:4616,0,8872:.:1:1:.:.:1:-0.0533013
chr17	64726827	.	G	A	15375.8	REJECT	NS=2;DP=408;DPB=451.0;AC=4;AN=4;AF=1.0;RO=1;AO=449;PRO=0.0;PAO=0.0;QR=16;QA=17177;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=246;SAR=203;SRP=5.18177;SAP=11.9525;AB=0.0;ABP=0.0;RUN=1;RPP=14.6221;RPPR=5.18177;RPL=249.0;RPR=200.0;EPP=10.3662;EPPR=5.18177;DPRA=0.0;ODDS=56.0445;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995546;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.561;Dels=0.0;FS=1.587;HaplotypeScore=3.9326;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.604;QD=28.805;ReadPosRankSum=1.347;SOR=0.6825;ClippingRankSum=-1.176	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:1:16:84:3134:-280.689,-21.5617,0.0:82:99:83:1,80:3245,232,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:366:0:0:365:14043:-1263.05,-98.8632,0.0:365:100:365:0,365:15764,1093,0:.:1:1:.:.:.:-0.0533013
chr17	64727100	.	G	C	5699.125	REJECT	NS=2;DP=349;DPB=401.0;AC=2;AN=4;AF=0.5;RO=199;AO=201;PRO=0.0;PAO=0.0;QR=7713;QA=7734;PQR=0.0;PQA=0.0;SRF=69;SRR=130;SAF=83;SAR=118;SRP=43.6136;SAP=16.2444;AB=0.501247;ABP=3.01572;RUN=1;RPP=5.44105;RPPR=6.16385;RPL=108.0;RPR=93.0;EPP=3.10753;EPPR=3.2831;DPRA=0.0;ODDS=323.036;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99005;PAIREDR=0.984925;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7825;Dels=0.0;FS=3.917;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4055;QD=17.43;ReadPosRankSum=0.319;SOR=0.442;ClippingRankSum=0.054	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.716:99:52:2011:49:1870:-140.934,0.0,-153.659:48:49:99:49,48:1628,0,1727:1:.:1:.:.:.:-0.00997748	0/1:118.716:298:147:5702:152:5864:-446.441,0.0,-431.889:151:51:298:146,151:5629,0,5456:.:1:1:.:.:.:-0.0533013
chr17	64727195	.	G	A	393.847	REJECT	NS=2;DP=198;DPB=198.0;AC=1;AN=4;AF=0.25;RO=169;AO=29;PRO=0.0;PAO=0.0;QR=6423;QA=1049;PQR=0.0;PQA=0.0;SRF=38;SRR=131;SAF=10;SAR=19;SRP=114.141;SAP=9.07545;AB=0.4;ABP=6.91895;RUN=1;RPP=9.07545;RPPR=39.103;RPL=19.0;RPR=10.0;EPP=3.68421;EPPR=3.02315;DPRA=0.0;ODDS=9.68432;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9655;MQMR=60.0;PAIRED=0.965517;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-2.375;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.155;QD=11.79;ReadPosRankSum=1.778;SOR=0.725;ClippingRankSum=-0.37	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:44:27:1021:18:623:-44.337,0.0,-79.8279:18:40:44:26,18:547,0,1010:1:.:1:.:.:.:-0.00997748	0/0:42.0587:153:142:5402:11:426:0.0,-3.10249,-447.715:11:7:153:.:.:.:.:0:.:.:.:-0.0533013
chr17	64727205	.	A	G	3230.87	REJECT	NS=2;DP=159;DPB=179.0;AC=3;AN=4;AF=0.75;RO=59;AO=120;PRO=0.0;PAO=0.0;QR=2296;QA=4522;PQR=0.0;PQA=0.0;SRF=9;SRR=50;SAF=26;SAR=94;SRP=64.8789;SAP=86.6844;AB=0.578571;ABP=10.5174;RUN=1;RPP=4.16842;RPPR=22.4799;RPL=64.0;RPR=56.0;EPP=13.4334;EPPR=3.93042;DPRA=0.0;ODDS=25.3509;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.725;MQMR=60.0;PAIRED=0.983333;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.435;Dels=0.0;FS=0.4355;HaplotypeScore=13.9638;MLEAC=1;MLEAF=0.75;MQ=59.915;MQRankSum=1.118;QD=21.8;ReadPosRankSum=-1.401;SOR=1.384	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:104.54:39:0:0:39:1477:-133.181,-10.5838,0.0:39:100:39:0,39:1708,117,0:1:.:1:.:.:.:-0.00997748	0/1:119.3645:140:59:2296:81:3045:-235.364,0.0,-168.705:81:58:140:59,81:2957,0,2165:.:1:1:.:.:.:-0.0533013
chr17	64727468	.	A	G	353.313	REJECT	NS=2;DP=79;DPB=82.75;AC=2;AN=4;AF=0.5;RO=47;AO=19;PRO=2.0;PAO=0.5;QR=1647;QA=652;PQR=64.0;PQA=17.0;SRF=41;SRR=6;SAF=18;SAR=1;SRP=59.6072;SAP=36.0395;AB=0.240506;ABP=49.2159;RUN=1;RPP=12.2676;RPPR=23.3852;RPL=14.0;RPR=5.0;EPP=8.61041;EPPR=16.3625;DPRA=0.0;ODDS=13.1777;GTI=0;TYPE=snp;CIGAR=1M1X2M;NUMALT=2;MEANALT=6.5;LEN=1;MQM=53.2105;MQMR=54.0213;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.588;Dels=0.04;FS=0.0;HaplotypeScore=66.7795;MLEAC=1;MLEAF=0.5;MQ=56.16;MQRankSum=0.416;QD=2.47;ReadPosRankSum=1.144;SOR=1.212	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:64.8667:23:6:206:11:397:-36.4181,0.0,-13.4623:11:55:20:.:.:.:.:1:.:.:.:-0.00997748	0/1:78.11495:68:41:1441:8:255:-8.59517,0.0,-119.549:10:16:65:68,13:236,0,2351:.:1:1:.:.:.:-0.0533013
chr17	64727468	.	AGA	GG	353.313	REJECT	NS=2;DP=79;DPB=82.75;AC=2;AN=2;AF=0.0;RO=47;AO=4;PRO=2.0;PAO=1.5;QR=1647;QA=144;PQR=64.0;PQA=49.0;SRF=41;SRR=6;SAF=4;SAR=0;SRP=59.6072;SAP=11.6962;AB=0.0506329;ABP=141.572;RUN=1;RPP=11.6962;RPPR=23.3852;RPL=0.0;RPR=4.0;EPP=11.6962;EPPR=16.3625;DPRA=0.0;ODDS=13.1777;GTI=0;TYPE=complex;CIGAR=1M1D1M1X;NUMALT=2;MEANALT=6.5;LEN=2;MQM=52.0;MQMR=54.0213;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:64.8667:23:6:206:3:106:-36.4181,-21.21,-36.5682:3:15:20:.:.:1:.:.:.:-0.00997748	./1:57.2299:56:41:1441:1:38:-8.59517,-17.1016,-138.531:1:2:50:.:.:1:.:.:.:-0.0533013
chr17	64727488	.	AGAAT	GGAAG	71.4143	REJECT	NS=2;DP=146;DPB=165.4;AC=2;AN=2;AF=0.0;RO=117;AO=4;PRO=44.0;PAO=0.0;QR=4003;QA=49;PQR=1189.5;PQA=0.0;SRF=76;SRR=41;SAF=4;SAR=0;SRP=25.7458;SAP=11.6962;AB=0.0;ABP=0.0;RUN=1;RPP=11.6962;RPPR=143.488;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=14.61;DPRA=0.0;ODDS=11.4515;GTI=0;TYPE=complex;CIGAR=1X3M1X;NUMALT=2;MEANALT=5.0;LEN=5;MQM=55.0;MQMR=59.4957;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.6114:52:41:1388:4:49:0.0,-3.27873,-139.457:4:8:49:.:.:1:.:.:.:-0.00997748	./1:71.3792:94:76:2615:0:0:-15.3381,-15.554,-351.507:0:0:83:.:.:1:.:.:.:-0.0533013
chr17	64727492	.	T	G	71.4143	REJECT	NS=2;DP=146;DPB=165.4;AC=2;AN=3;AF=0.25;RO=117;AO=11;PRO=44.0;PAO=10.0;QR=4003;QA=185;PQR=1189.5;PQA=229.5;SRF=76;SRR=41;SAF=11;SAR=0;SRP=25.7458;SAP=26.8965;AB=0.0744681;ABP=150.855;RUN=1;RPP=26.8965;RPPR=143.488;RPL=11.0;RPR=0.0;EPP=26.8965;EPPR=14.61;DPRA=0.0;ODDS=11.4515;GTI=0;TYPE=snp;CIGAR=4M1X;NUMALT=2;MEANALT=5.0;LEN=1;MQM=57.0909;MQMR=59.4957;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.6114:52:41:1388:4:75:0.0,-0.934988,-136.721:4:8:49:.:.:1:.:.:.:-0.00997748	0/1:71.3792:94:76:2615:7:110:-15.3381,0.0,-267.106:7:8:83:.:.:1:.:.:.:-0.0533013
chr17	64727631	.	C	T	12179.65	REJECT	NS=2;DP=319;DPB=365.0;AC=4;AN=4;AF=1.0;RO=0;AO=365;PRO=0.0;PAO=0.0;QR=0;QA=14088;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=193;SAR=172;SRP=0.0;SAP=5.63391;AB=0.0;ABP=0.0;RUN=1;RPP=73.6932;RPPR=0.0;RPL=128.0;RPR=237.0;EPP=5.15798;EPPR=0.0;DPRA=0.0;ODDS=60.4674;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991781;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.91;SOR=0.7905	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:89:0:0:90:3463:-311.731,-24.3856,0.0:89:100:89:0,89:3817,267,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:274:0:0:275:10625:-955.696,-74.4886,0.0:274:100:274:0,274:11831,816,0:.:1:1:.:.:.:-0.0533013
chr17	64727722	.	C	G	2688.12	PASS	SOMATIC;NS=2;DP=390;DPB=390.0;AC=1;AN=3;AF=0.25;RO=288;AO=101;PRO=0.0;PAO=0.0;QR=11128;QA=3948;PQR=0.0;PQA=0.0;SRF=121;SRR=167;SAF=48;SAR=53;SRP=18.9646;SAP=3.54779;AB=0.336667;ABP=72.5264;RUN=1;RPP=3.54779;RPPR=11.7263;RPL=48.0;RPR=53.0;EPP=3.0318;EPPR=8.92153;DPRA=3.33333;ODDS=57.1256;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980198;PAIREDR=0.989583;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.074;Dels=0.0;FS=7.703;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.377;QD=11.59;ReadPosRankSum=0.151;SOR=0.389	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:84:90:3474:0:0:0.0,-24.3833,-312.715:0:0:84:79,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:296:198:7654:101:3948:-274.099,0.0,-607.44:99:34:295:192,96:39.0:0.332:2:3458,0,7610:.:1:1:.:.:1:-0.0533013
chr17	64727942	.	G	A	242.724	REJECT	NS=2;DP=42;DPB=42.0;AC=2;AN=4;AF=0.5;RO=29;AO=13;PRO=0.0;PAO=0.0;QR=924;QA=459;PQR=0.0;PQA=0.0;SRF=5;SRR=24;SAF=5;SAR=8;SRP=30.0414;SAP=4.51363;AB=0.309524;ABP=16.2459;RUN=1;RPP=4.51363;RPPR=3.68421;RPL=5.0;RPR=8.0;EPP=11.1951;EPPR=6.67934;DPRA=0.0;ODDS=0.003371;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=48.5385;MQMR=51.8276;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.348;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=54.34;MQRankSum=-0.348;QD=32.49;ReadPosRankSum=0.0;SOR=0.525;ClippingRankSum=-1.393	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:8.750885:10:1:39:10:356:-28.478,0.0,-0.569053:9:90:10:1,9:353,0,14:1:.:1:.:.:.:-0.00997748	0/1:9.76789:31:28:885:3:103:-0.811411,0.0,-70.9743:3:10:31:.:.:.:.:1:.:.:.:-0.0533013
chr17	64728235	.	G	GA	2332.53	REJECT	NS=2;DP=163;DPB=252.385;AC=2;AN=2;AF=0.5;RO=5;AO=27;PRO=41.4667;PAO=64.9667;QR=167;QA=853;PQR=1454.38;PQA=2247.88;SRF=4;SRR=1;SAF=22;SAR=5;SRP=6.91895;SAP=26.2531;AB=0.165644;ABP=161.288;RUN=1;RPP=3.09072;RPPR=3.44459;RPL=14.0;RPR=13.0;EPP=6.95112;EPPR=3.44459;DPRA=0.0;ODDS=34.8143;GTI=0;TYPE=ins;CIGAR=1M1I38M;NUMALT=5;MEANALT=29.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.962963;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.7415;FS=4.0705;MLEAC=1;MLEAF=0.5;MQ=60.005;MQRankSum=-0.3815;QD=16.01;ReadPosRankSum=1.096;SOR=1.587;ClippingRankSum=-0.982	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:110.7315:57:2:64:4:125:-53.9289,-35.2992,-38.6375:9:18:46:3,15:1908,1605,1609:1:.:1:.:.:.:-0.00997748	./1:114.26:140:3:103:23:728:-190.143,-65.8362,-67.495:49:41:111:64,76:3279,1718,2201:.:1:1:.:.:.:-0.0533013
chr17	64728235	.	GA	G	2332.53	PASS	SOMATIC;NS=2;DP=163;DPB=252.385;AC=1;AN=3;AF=0.25;RO=5;AO=20;PRO=41.4667;PAO=41.9667;QR=167;QA=574;PQR=1454.38;PQA=1460.13;SRF=4;SRR=1;SAF=10;SAR=10;SRP=6.91895;SAP=3.0103;AB=0.173913;ABP=109.224;RUN=1;RPP=6.91895;RPPR=3.44459;RPL=7.0;RPR=13.0;EPP=3.44459;EPPR=3.44459;DPRA=0.0;ODDS=34.8143;GTI=0;TYPE=del;CIGAR=1M1D37M;NUMALT=5;MEANALT=39.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:122.463:48:2:64:0:0:-53.9289,-60.9812,-140.043:0:0:26:.:.:.:.:.:.:-0.00997748	./1:129.52:115:3:103:20:574:-190.143,-111.357,-165.442:20:30:67:.:.:1:.:.:.:-0.0533013
chr17	64728235	.	GAAAAAAAAAATCAA	G	2332.53	REJECT	NS=2;DP=163;DPB=252.385;AC=2;AN=2;AF=0.375;RO=5;AO=31;PRO=41.4667;PAO=29.4667;QR=167;QA=838;PQR=1454.38;PQA=1011.88;SRF=4;SRR=1;SAF=23;SAR=8;SRP=6.91895;SAP=18.771;AB=0.190184;ABP=138.907;RUN=1;RPP=8.68415;RPPR=3.44459;RPL=20.0;RPR=11.0;EPP=14.8483;EPPR=3.44459;DPRA=0.0;ODDS=34.8143;GTI=0;TYPE=del;CIGAR=1M14D24M;NUMALT=5;MEANALT=29.5;LEN=14;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=64728249;HOMLEN=10;HOMSEQ=AAAAAAAAAA;SVLEN=-14;SVTYPE=DEL;BaseQRankSum=0.7415;FS=4.0705;MLEAC=1;MLEAF=0.5;MQ=60.005;MQRankSum=-0.3815;QD=16.01;ReadPosRankSum=1.096;SOR=1.587;ClippingRankSum=-0.982	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:110.7315:57:2:64:17:498:-53.9289,-13.9472,-33.4235:49:73:67:8,59:1908,311,730:1:.:1:1:.:.:-0.00997748	./1:114.26:140:3:103:14:340:-190.143,-185.302,-495.889:16:21:156:87,31:3279,1209,17400:.:1:.:1:.:.:-0.0533013
chr17	64728235	.	GAAAAAAAAAATCAAA	G	2332.53	REJECT	NS=2;DP=163;DPB=252.385;AC=0;AN=4;AF=0.0;RO=5;AO=4;PRO=41.4667;PAO=28.1667;QR=167;QA=120;PQR=1454.38;PQA=975.583;SRF=4;SRR=1;SAF=1;SAR=3;SRP=6.91895;SAP=5.18177;AB=0.0245399;ABP=323.069;RUN=1;RPP=3.0103;RPPR=3.44459;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=3.44459;DPRA=0.0;ODDS=34.8143;GTI=0;TYPE=del;CIGAR=1M15D23M;NUMALT=5;MEANALT=29.5;LEN=15;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:122.463:48:2:64:3:90:-53.9289,-47.1894,-85.7388:3:12:26:.:.:.:.:.:.:-0.00997748	0/0:129.52:115:3:103:1:30:-190.143,-220.226,-578.872:1:1:67:.:.:.:.:.:.:-0.0533013
chr17	64728245	.	ATC	TCA	2332.53	PASS	SOMATIC;NS=2;DP=163;DPB=252.385;AC=0;AN=4;AF=0.0;RO=5;AO=6;PRO=41.4667;PAO=32.9667;QR=167;QA=196;PQR=1454.38;PQA=1104.13;SRF=4;SRR=1;SAF=6;SAR=0;SRP=6.91895;SAP=16.0391;AB=0.0521739;ABP=203.333;RUN=1;RPP=3.0103;RPPR=3.44459;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=3.44459;DPRA=0.0;ODDS=34.8143;GTI=0;TYPE=mnp;CIGAR=10M3X26M;NUMALT=5;MEANALT=39.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:122.463:48:2:64:0:0:-53.9289,-61.7951,-150.58:0:0:26:.:.:.:.:.:.:-0.00997748	0/0:129.52:115:3:103:6:196:-190.143,-163.999,-510.321:6:9:67:.:.:.:.:.:.:-0.0533013
chr17	64728525	.	C	T	17593.05	REJECT	NS=2;DP=461;DPB=527.0;AC=4;AN=4;AF=1.0;RO=0;AO=527;PRO=0.0;PAO=0.0;QR=0;QA=20248;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=280;SAR=247;SRP=0.0;SAP=7.49746;AB=0.0;ABP=0.0;RUN=1;RPP=6.97004;RPPR=0.0;RPL=279.0;RPR=248.0;EPP=7.49746;EPPR=0.0;DPRA=0.0;ODDS=85.3913;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9886;MQMR=0.0;PAIRED=0.996205;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.035;SOR=0.8875	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.7085:128:0:0:130:4958:-446.16,-35.2099,0.0:128:100:128:0,126:5326,379,0:1:.:1:.:.:.:-0.00997748	1/1:128.7085:396:0:0:397:15290:-1375.14,-107.517,0.0:396:100:396:0,396:17058,1180,0:.:1:1:.:.:.:-0.0533013
chr17	64728707	.	C	T	4296.61	PASS	SOMATIC;NS=2;DP=537;DPB=537.0;AC=1;AN=3;AF=0.25;RO=376;AO=161;PRO=0.0;PAO=0.0;QR=14233;QA=6038;PQR=0.0;PQA=0.0;SRF=189;SRR=187;SAF=88;SAR=73;SRP=3.0334;SAP=6.04497;AB=0.405542;ABP=33.7774;RUN=1;RPP=3.13169;RPPR=5.32038;RPL=82.0;RPR=79.0;EPP=4.10278;EPPR=4.14224;DPRA=2.83571;ODDS=88.2502;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993789;PAIREDR=0.986702;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.106;Dels=0.0;FS=6.659;HaplotypeScore=13.6249;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.741;QD=14.13;ReadPosRankSum=-0.363;SOR=0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:136.303:137:140:5210:0:0:0.0,-37.9006,-468.837:0:0:137:135,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:117.6515:395:236:9023:161:6038:-435.565,0.0,-704.053:161:41:395:229,156:37.0:0.403:2:5610,0,8848:.:1:1:.:.:1:-0.0533013
chr17	64783081	.	G	A	13328.9	REJECT	NS=2;DP=345;DPB=389.0;AC=4;AN=4;AF=1.0;RO=0;AO=389;PRO=0.0;PAO=0.0;QR=0;QA=15105;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=168;SAR=221;SRP=0.0;SAP=18.6907;AB=0.0;ABP=0.0;RUN=1;RPP=3.01588;RPPR=0.0;RPL=194.0;RPR=195.0;EPP=29.5871;EPPR=0.0;DPRA=0.0;ODDS=59.2476;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994859;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.705;SOR=0.983	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:87:0:0:88:3360:-302.502,-23.8558,0.0:87:100:87:0,86:3342,258,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:301:0:0:301:11745:-1056.41,-81.5619,0.0:301:100:301:0,301:13181,906,0:.:1:1:.:.:.:-0.0533013
chr17	66416357	.	C	T	1544.1	REJECT	NS=2;DP=309;DPB=352.0;AC=2;AN=4;AF=0.5;RO=274;AO=78;PRO=0.0;PAO=0.0;QR=10419;QA=2991;PQR=0.0;PQA=0.0;SRF=158;SRR=116;SAF=43;SAR=35;SRP=16.9901;SAP=4.79202;AB=0.221591;ABP=239.997;RUN=1;RPP=3.45573;RPPR=11.1256;RPL=37.0;RPR=41.0;EPP=12.0303;EPPR=15.6904;DPRA=0.0;ODDS=140.89;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99635;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.2925;Dels=0.0;FS=2.0775;HaplotypeScore=4.8065;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.151;QD=10.225;ReadPosRankSum=0.3725;SOR=0.5775;ClippingRankSum=1.662	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:46:1702:39:1499:-112.312,0.0,-130.189:39:47:83:43,39:1436,0,1540:1:.:1:.:.:.:-0.00997748	0/1:129.501:266:228:8717:39:1492:-62.2876,0.0,-711.78:39:15:266:227,39:901,0,8910:.:1:1:.:.:.:-0.0533013
chr17	66524987	.	G	A	5485.955	REJECT	NS=2;DP=245;DPB=283.0;AC=3;AN=4;AF=0.75;RO=82;AO=201;PRO=0.0;PAO=0.0;QR=3144;QA=7724;PQR=0.0;PQA=0.0;SRF=57;SRR=25;SAF=135;SAR=66;SRP=30.1272;SAP=54.445;AB=0.607656;ABP=24.0497;RUN=1;RPP=88.5836;RPPR=30.1272;RPL=56.0;RPR=145.0;EPP=21.1707;EPPR=3.96363;DPRA=0.0;ODDS=47.1793;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995025;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.116;Dels=0.0;FS=0.928;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.055;QD=27.825;ReadPosRankSum=-0.944;SOR=1.1115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.905:74:0:0:74:2841:-255.825,-20.0637,0.0:74:100:74:0,75:3103,228,0:1:.:1:.:.:.:-0.00997748	0/1:119.905:208:82:3144:127:4883:-382.671,0.0,-226.222:126:61:208:82,126:4830,0,2877:.:1:1:.:.:.:-0.0533013
chr17	66539847	.	C	T	4981.165000000001	REJECT	NS=2;DP=313;DPB=360.0;AC=2;AN=4;AF=0.5;RO=180;AO=180;PRO=0.0;PAO=0.0;QR=6890;QA=6897;PQR=0.0;PQA=0.0;SRF=104;SRR=76;SAF=104;SAR=76;SRP=12.4683;SAP=12.4683;AB=0.5;ABP=3.0103;RUN=1;RPP=3.20332;RPPR=4.74748;RPL=88.0;RPR=92.0;EPP=7.83579;EPPR=4.74748;DPRA=0.0;ODDS=300.467;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994444;PAIREDR=0.994444;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5095;Dels=0.0;FS=2.138;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1505;QD=18.265;ReadPosRankSum=-0.0275;SOR=0.6165;ClippingRankSum=-0.982	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:45:1744:48:1842:-140.594,0.0,-131.8:48:52:92:43,48:1733,0,1546:1:.:1:.:.:.:-0.00997748	0/1:129.501:267:135:5146:132:5055:-382.386,0.0,-390.594:132:49:267:135,132:4835,0,4961:.:1:1:.:.:.:-0.0533013
chr17	72013922	.	G	C	11028.05	REJECT	NS=2;DP=310;DPB=357.0;AC=4;AN=4;AF=1.0;RO=0;AO=357;PRO=0.0;PAO=0.0;QR=0;QA=13124;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=94;SAR=263;SRP=0.0;SAP=176.734;AB=0.0;ABP=0.0;RUN=1;RPP=27.152;RPPR=0.0;RPL=210.0;RPR=147.0;EPP=20.0962;EPPR=0.0;DPRA=0.0;ODDS=62.8854;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994398;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=10.8276;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.015;SOR=2.093	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:91:0:0:94:3516:-316.472,-25.4357,0.0:91:100:91:0,89:3688,266,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:263:0:0:263:9608:-864.148,-71.069,0.0:263:100:263:0,263:10541,740,0:.:1:1:.:.:.:-0.0533013
chr17	74732507	.	A	G	9606.18	REJECT	NS=2;DP=262;DPB=301.0;AC=4;AN=4;AF=1.0;RO=0;AO=300;PRO=0.0;PAO=0.0;QR=0;QA=11347;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=61;SAR=239;SRP=0.0;SAP=232.347;AB=0.0;ABP=0.0;RUN=1;RPP=11.3777;RPPR=0.0;RPL=167.0;RPR=133.0;EPP=14.5915;EPPR=0.0;DPRA=0.0;ODDS=52.9985;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996667;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8399;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.1;SOR=2.6095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.596:77:0:0:78:2987:-268.956,-21.1419,0.0:77:100:77:0,76:3178,228,0:1:.:1:.:.:.:-0.00997748	1/1:125.596:223:0:0:222:8360:-751.228,-59.3014,0.0:222:100:222:0,222:9343,650,0:.:1:1:.:.:.:-0.0533013
chr17	74733099	.	G	A	8728.560000000001	REJECT	NS=2;DP=385;DPB=444.0;AC=3;AN=4;AF=0.75;RO=122;AO=322;PRO=0.0;PAO=0.0;QR=4710;QA=12006;PQR=0.0;PQA=0.0;SRF=62;SRR=60;SAF=178;SAR=144;SRP=3.0815;SAP=10.806;AB=0.624615;ABP=46.8473;RUN=1;RPP=3.1182;RPPR=4.7902;RPL=163.0;RPR=159.0;EPP=3.1182;EPPR=3.65106;DPRA=0.0;ODDS=74.1508;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981366;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.638;Dels=0.0;FS=1.228;HaplotypeScore=4.9022;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.271;QD=27.225;ReadPosRankSum=-0.213;SOR=0.907	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.2:118:0:0:119:4349:-390.945,-31.7773,0.0:118:100:118:0,117:4665,349,0:1:.:1:.:.:.:-0.00997748	0/1:120.2:325:122:4710:203:7657:-600.722,0.0,-335.634:203:62:325:122,203:7636,0,4304:.:1:1:.:.:.:-0.0533013
chr17	78681626	.	C	T	824.027	REJECT	NS=2;DP=203;DPB=236.0;AC=2;AN=4;AF=0.5;RO=189;AO=47;PRO=0.0;PAO=0.0;QR=7270;QA=1771;PQR=0.0;PQA=0.0;SRF=153;SRR=36;SAF=40;SAR=7;SRP=160.287;SAP=53.3238;AB=0.199153;ABP=188.542;RUN=1;RPP=23.3852;RPPR=60.9277;RPL=13.0;RPR=34.0;EPP=8.60069;EPPR=5.59539;DPRA=0.0;ODDS=2.72416;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994709;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3035;Dels=0.0;FS=1.3425;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.268;QD=8.61;ReadPosRankSum=0.372;SOR=0.969;ClippingRankSum=-0.954	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.752:64:33:1297:32:1212:-91.5293,0.0,-99.1884:31:48:64:33,31:1098,0,1101:1:.:1:.:.:.:-0.00997748	0/1:55.5534:170:156:5973:15:559:-3.98543,0.0,-491.072:15:9:170:155,15:113,0,6093:.:1:1:.:.:.:-0.0533013
chr17	78765219	.	A	G	9470.485	REJECT	NS=2;DP=258;DPB=295.0;AC=4;AN=4;AF=1.0;RO=0;AO=295;PRO=0.0;PAO=0.0;QR=0;QA=11051;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=188;SAR=107;SRP=0.0;SAP=51.3053;AB=0.0;ABP=0.0;RUN=1;RPP=53.7197;RPPR=0.0;RPL=106.0;RPR=189.0;EPP=8.37641;EPPR=0.0;DPRA=0.0;ODDS=49.8492;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989831;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=25.395;SOR=1.429	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.307:72:0:0:73:2762:-248.705,-19.7742,0.0:72:100:72:0,72:3008,216,0:1:.:1:.:.:.:-0.00997748	1/1:124.307:221:0:0:222:8289:-745.648,-60.0711,0.0:221:100:221:0,221:9171,644,0:.:1:1:.:.:.:-0.0533013
chr17	78820329	.	C	T	1238.65	REJECT	NS=1;DP=109;DPB=109.0;AC=1;AN=4;AF=0.5;RO=61;AO=48;PRO=0.0;PAO=0.0;QR=2346;QA=1767;PQR=0.0;PQA=0.0;SRF=24;SRR=37;SAF=18;SAR=30;SRP=9.02635;SAP=9.52472;AB=0.440367;ABP=6.37708;RUN=1;RPP=3.19126;RPPR=4.7546;RPL=23.0;RPR=25.0;EPP=4.6389;EPPR=3.90025;DPRA=0.0;ODDS=285.209;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979167;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.826;FS=0.754;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.306;QD=13.66;ReadPosRankSum=0.964;SOR=0.591;ClippingRankSum=-0.457	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:61:2346:48:1767:-129.51,0.0,-181.631:46:43:106:60,44:1463,0,2160:1:.:1:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0533013
chr17	78820374	.	G	A	1029.01	REJECT	NS=1;DP=78;DPB=78.0;AC=1;AN=4;AF=0.5;RO=40;AO=38;PRO=0.0;PAO=0.0;QR=1529;QA=1465;PQR=0.0;PQA=0.0;SRF=15;SRR=25;SAF=12;SAR=26;SRP=8.43898;SAP=14.2105;AB=0.487179;ABP=3.12166;RUN=1;RPP=21.525;RPPR=8.43898;RPL=28.0;RPR=10.0;EPP=5.06748;EPPR=3.0103;DPRA=0.0;ODDS=236.937;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.444;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.056;QD=16.53;ReadPosRankSum=-0.036;SOR=1.071;ClippingRankSum=-1.382	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.0495:77:40:1529:38:1465:-110.764,0.0,-116.528:37:48:77:40,37:1301,0,1363:1:.:1:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0533013
chr17	78865546	.	T	C	1541.325	REJECT	NS=2;DP=324;DPB=377.0;AC=2;AN=4;AF=0.5;RO=298;AO=79;PRO=0.0;PAO=0.0;QR=11352;QA=3047;PQR=0.0;PQA=0.0;SRF=158;SRR=140;SAF=42;SAR=37;SRP=5.37123;SAP=3.69747;AB=0.209549;ABP=279.26;RUN=1;RPP=3.69747;RPPR=11.4339;RPL=37.0;RPR=42.0;EPP=20.1897;EPPR=7.93619;DPRA=0.0;ODDS=108.162;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993289;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.525;Dels=0.0;FS=0.7115;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.186;QD=8.175;ReadPosRankSum=1.0085;SOR=0.696;ClippingRankSum=-0.059	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.558:105:62:2356:44:1701:-124.379,0.0,-183.333:43:41:105:61,43:1463,0,2120:1:.:1:.:.:.:-0.00997748	0/1:118.558:271:236:8996:35:1346:-47.7157,0.0,-735.777:35:13:271:236,35:718,0,9182:.:1:1:.:.:.:-0.0533013
chr17	78865630	.	A	G	1396.58	REJECT	NS=2;DP=303;DPB=352.0;AC=2;AN=4;AF=0.5;RO=281;AO=71;PRO=0.0;PAO=0.0;QR=10815;QA=2689;PQR=0.0;PQA=0.0;SRF=126;SRR=155;SAF=28;SAR=43;SRP=9.50926;SAP=9.89173;AB=0.201705;ABP=275.061;RUN=1;RPP=3.7749;RPPR=33.6814;RPL=38.0;RPR=33.0;EPP=3.7749;EPPR=16.0005;DPRA=0.0;ODDS=77.9115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985915;PAIREDR=0.992883;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.904;Dels=0.0;FS=3.474;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0075;QD=8.245;ReadPosRankSum=-0.466;SOR=0.915;ClippingRankSum=0.033	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:56:2087:41:1530:-111.463,0.0,-161.582:40:42:96:56,40:1417,0,1797:1:.:1:.:.:.:-0.00997748	0/1:129.501:255:225:8728:30:1159:-35.1871,0.0,-715.994:30:12:255:225,30:544,0,8981:.:1:1:.:.:.:-0.0533013
chr17	78896488	.	C	T	1052.94	REJECT	NS=1;DP=87;DPB=87.0;AC=1;AN=4;AF=0.5;RO=46;AO=41;PRO=0.0;PAO=0.0;QR=1791;QA=1540;PQR=0.0;PQA=0.0;SRF=25;SRR=21;SAF=23;SAR=18;SRP=3.76559;SAP=4.33437;AB=0.471264;ABP=3.63429;RUN=1;RPP=47.552;RPPR=25.858;RPL=6.0;RPR=35.0;EPP=4.33437;EPPR=6.03148;DPRA=0.0;ODDS=242.449;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.97561;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.657;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.733;QD=15.93;ReadPosRankSum=0.057;SOR=0.673;ClippingRankSum=-0.198	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:46:1791:41:1540:-115.057,0.0,-137.666:40:46:86:46,39:1398,0,1706:1:.:1:.:.:.:-0.00997748	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0533013
chr17	78897561	.	C	T	11198.5	REJECT	NS=2;DP=296;DPB=345.0;AC=4;AN=4;AF=1.0;RO=0;AO=345;PRO=0.0;PAO=0.0;QR=0;QA=13162;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=172;SAR=173;SRP=0.0;SAP=3.01659;AB=0.0;ABP=0.0;RUN=1;RPP=3.31871;RPPR=0.0;RPL=169.0;RPR=176.0;EPP=3.52012;EPPR=0.0;DPRA=0.0;ODDS=64.8153;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994203;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.962;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.37;SOR=0.802	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:97:3694:-332.497,-26.2738,0.0:97:100:97:0,97:4043,291,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:248:0:0:248:9468:-851.708,-67.1806,0.0:248:100:248:0,248:10625,740,0:.:1:1:.:.:.:-0.0533013
chr17	78897587	.	A	G	11627.75	REJECT	NS=2;DP=313;DPB=362.0;AC=4;AN=4;AF=1.0;RO=1;AO=360;PRO=0.0;PAO=0.0;QR=40;QA=13573;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=180;SAR=180;SRP=5.18177;SAP=3.0103;AB=0.0;ABP=0.0;RUN=1;RPP=20.5992;RPPR=5.18177;RPL=153.0;RPR=207.0;EPP=4.19255;EPPR=5.18177;DPRA=0.0;ODDS=58.5744;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991667;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.661;Dels=0.0;FS=1.5275;HaplotypeScore=4.8377;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.696;QD=29.135;ReadPosRankSum=1.196;SOR=0.4985;ClippingRankSum=1.268	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.0475:97:1:40:96:3577:-318.38,-22.6604,0.0:96:99:97:1,96:3948,246,0:1:.:1:.:.:.:-0.00997748	1/1:124.0475:265:0:0:264:9996:-899.099,-71.426,0.0:264:100:264:0,264:11160,777,0:.:1:1:.:.:.:-0.0533013
chr17	78897674	.	C	T	15568.5	REJECT	NS=2;DP=412;DPB=475.0;AC=4;AN=4;AF=1.0;RO=0;AO=475;PRO=0.0;PAO=0.0;QR=0;QA=18074;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=246;SAR=229;SRP=0.0;SAP=4.33147;AB=0.0;ABP=0.0;RUN=1;RPP=8.61041;RPPR=0.0;RPL=220.0;RPR=255.0;EPP=3.78289;EPPR=0.0;DPRA=0.0;ODDS=82.2051;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993684;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8988;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.835;SOR=0.9795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:124:0:0:125:4628:-416.471,-33.8261,0.0:124:100:124:0,123:4926,368,0:1:.:1:.:.:.:-0.00997748	1/1:129.501:349:0:0:350:13446:-1209.33,-94.7706,0.0:349:100:349:0,349:14958,1032,0:.:1:1:.:.:.:-0.0533013
chr17	78897732	.	CT	TA	1729.92	REJECT	NS=2;DP=402;DPB=456.5;AC=2;AN=4;AF=0.5;RO=370;AO=82;PRO=6.0;PAO=1.0;QR=14265;QA=3038;PQR=72.0;PQA=31.0;SRF=197;SRR=173;SAF=44;SAR=38;SRP=6.39075;SAP=3.96363;AB=0.181015;ABP=403.371;RUN=1;RPP=20.9117;RPPR=5.85082;RPL=54.0;RPR=28.0;EPP=5.65844;EPPR=3.38591;DPRA=0.0;ODDS=113.995;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.987805;PAIREDR=0.997297;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=-0.35;Dels=0.0;FS=0.364;HaplotypeScore=8.7899;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.397;QD=9.42;ReadPosRankSum=0.327;SOR=0.7155;ClippingRankSum=0.082	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.773:102:57:2205:44:1657:-128.709,0.0,-170.831:46:45:102:56,48:1839,0,2220:1:.:1:.:.:.:-0.00997748	0/1:117.773:352:313:12060:38:1381:-51.9075,0.0,-994.522:38:11:351:314,38:533,0,12585:.:1:1:.:.:.:-0.0533013
chr17	78919558	.	C	T	1142.05	REJECT	NS=2;DP=314;DPB=357.0;AC=2;AN=4;AF=0.5;RO=287;AO=70;PRO=0.0;PAO=0.0;QR=11069;QA=2671;PQR=0.0;PQA=0.0;SRF=105;SRR=182;SAF=23;SAR=47;SRP=47.8697;SAP=20.8784;AB=0.196078;ABP=289.432;RUN=1;RPP=6.1124;RPPR=15.7289;RPL=40.0;RPR=30.0;EPP=3.50664;EPPR=15.7289;DPRA=0.0;ODDS=147.742;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1365;Dels=0.0;FS=0.321;HaplotypeScore=4.9659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5365;QD=7.5;ReadPosRankSum=-0.211;SOR=0.738;ClippingRankSum=0.487	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.253:80:52:2029:29:1110:-77.9726,0.0,-160.718:28:35:80:51,28:951,0,1877:1:.:1:.:.:.:-0.00997748	0/1:117.253:274:235:9040:41:1561:-65.6802,0.0,-738.377:41:15:274:231,41:932,0,9107:.:1:1:.:.:.:-0.0533013
chr17	78935197	.	C	T	2629.75	PASS	SOMATIC;NS=2;DP=333;DPB=333.0;AC=1;AN=3;AF=0.25;RO=234;AO=99;PRO=0.0;PAO=0.0;QR=9020;QA=3816;PQR=0.0;PQA=0.0;SRF=153;SRR=81;SAF=74;SAR=25;SRP=51.1168;SAP=55.674;AB=0.392857;ABP=28.1373;RUN=1;RPP=3.55865;RPPR=16.4103;RPL=47.0;RPR=52.0;EPP=16.7191;EPPR=32.1117;DPRA=3.11111;ODDS=51.5388;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991453;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.692;Dels=0.0;FS=6.866;HaplotypeScore=6.9989;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.782;QD=13.92;ReadPosRankSum=0.011;SOR=1.178	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:79:81:3123:0:0:0.0,-21.9571,-281.174:0:0:79:77,0:.:0.0:0:.:.:.:0:.:.:0:-0.00997748	0/1:129.501:252:153:5897:99:3816:-275.013,0.0,-462.166:99:39:252:148,95:38.0:0.391:2:3536,0,5835:.:1:1:.:.:1:-0.0533013
chr17	78938134	.	C	T	1629.0349999999999	REJECT	NS=2;DP=321;DPB=365.0;AC=2;AN=4;AF=0.5;RO=284;AO=81;PRO=0.0;PAO=0.0;QR=10989;QA=3125;PQR=0.0;PQA=0.0;SRF=109;SRR=175;SAF=20;SAR=61;SRP=36.3164;SAP=48.0751;AB=0.221918;ABP=248.173;RUN=1;RPP=3.25157;RPPR=15.2439;RPL=39.0;RPR=42.0;EPP=12.6881;EPPR=54.4222;DPRA=0.0;ODDS=118.429;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8475;Dels=0.0;FS=14.8925;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5835;QD=10.13;ReadPosRankSum=2.1345;SOR=1.718;ClippingRankSum=-0.28	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.1695:88:44:1729:44:1700:-129.188,0.0,-131.785:44:50:88:44,44:1574,0,1592:1:.:1:.:.:.:-0.00997748	0/1:121.1695:277:240:9260:37:1425:-53.1504,0.0,-757.889:37:13:277:240,37:774,0,9538:.:1:1:.:.:.:-0.0533013
chr18	4517485	.	G	A	1936.09	REJECT	NS=2;DP=370;DPB=427.0;AC=2;AN=4;AF=0.5;RO=328;AO=99;PRO=0.0;PAO=0.0;QR=12517;QA=3798;PQR=0.0;PQA=0.0;SRF=162;SRR=166;SAF=48;SAR=51;SRP=3.11623;SAP=3.20771;AB=0.23185;ABP=269.695;RUN=1;RPP=6.71716;RPPR=3.67233;RPL=43.0;RPR=56.0;EPP=9.34924;EPPR=14.6886;DPRA=0.0;ODDS=206.206;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989899;PAIREDR=0.993902;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.509;Dels=0.0;FS=3.2835;HaplotypeScore=3.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.608;QD=9.325;ReadPosRankSum=0.8295;SOR=0.7;ClippingRankSum=1.318	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3425:112:65:2487:48:1848:-135.701,0.0,-193.209:48:42:112:63,48:1702,0,2255:1:.:1:.:.:.:-5.62239e-06	0/1:117.3425:313:263:10030:51:1950:-90.751,0.0,-817.118:50:16:313:263,50:1189,0,10257:.:1:1:.:.:.:-3.6124e-05
chr18	23602146	.	G	A	5412.8150000000005	REJECT	NS=2;DP=401;DPB=467.0;AC=2;AN=4;AF=0.5;RO=260;AO=206;PRO=0.0;PAO=0.0;QR=10037;QA=7793;PQR=0.0;PQA=0.0;SRF=127;SRR=133;SAF=110;SAR=96;SRP=3.31097;SAP=5.07636;AB=0.441113;ABP=17.076;RUN=1;RPP=6.42563;RPPR=11.5626;RPL=112.0;RPR=94.0;EPP=4.06441;EPPR=3.31097;DPRA=0.0;ODDS=372.328;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.988462;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.1565;Dels=0.0;FS=2.3165;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.195;QD=15.11;ReadPosRankSum=-0.4725;SOR=0.739;ClippingRankSum=-0.531	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.4075:128:73:2846:57:2196:-162.38,0.0,-220.881:57:44:128:70,57:1915,0,2645:1:.:1:.:.:.:-0.00133861	0/1:119.4075:336:187:7191:149:5597:-412.425,0.0,-555.81:148:44:335:186,148:5173,0,7031:.:1:1:.:.:.:-0.00739735
chr18	23602401	.	T	A	380.437	REJECT	NS=2;DP=223;DPB=313.28;AC=2;AN=2;AF=0.0;RO=105;AO=11;PRO=55.8667;PAO=26.7833;QR=3821;QA=263;PQR=2004.5;PQA=896.75;SRF=56;SRR=49;SAF=1;SAR=10;SRP=4.02365;SAP=19.0002;AB=0.0465116;ABP=310.248;RUN=1;RPP=3.20771;RPPR=3.03098;RPL=5.0;RPR=6.0;EPP=3.20771;EPPR=6.50534;DPRA=0.0;ODDS=3.32601;GTI=0;TYPE=snp;CIGAR=1X24M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990476;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.3016:51:24:889:3:42:0.0,-17.2007,-276.923:3:7:41:.:.:1:.:.:.:-0.00133861	./1:160.002:172:81:2932:8:221:-46.0383,-96.5809,-900.37:8:6:140:.:.:1:.:.:.:-0.00739735
chr18	23602401	.	T	TA	380.437	REJECT	NS=2;DP=223;DPB=313.28;AC=2;AN=3;AF=0.25;RO=105;AO=30;PRO=55.8667;PAO=45.8667;QR=3821;QA=863;PQR=2004.5;PQA=1541.5;SRF=56;SRR=49;SAF=17;SAR=13;SRP=4.02365;SAP=4.16842;AB=0.145349;ABP=190.918;RUN=1;RPP=26.4622;RPPR=3.03098;RPL=6.0;RPR=24.0;EPP=7.64277;EPPR=6.50534;DPRA=0.0;ODDS=3.32601;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990476;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.631;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.861;QD=1.6;RPA=14,15;RU=A;ReadPosRankSum=-1.826;SOR=0.829;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.3016:51:24:889:5:80:0.0,-1.65112,-82.7742:5:12:41:.:.:.:.:1:.:.:.:-0.00133861	0/1:129.501:209:81:2932:25:783:-46.0383,0.0,-272.319:39:22:169:145,53:434,0,2349:.:1:1:.:.:.:-0.00739735
chr18	23602401	.	TA	T	380.437	REJECT	NS=2;DP=223;DPB=313.28;AC=2;AN=2;AF=0.0;RO=105;AO=30;PRO=55.8667;PAO=35.2;QR=3821;QA=855;PQR=2004.5;PQA=1214.5;SRF=56;SRR=49;SAF=8;SAR=22;SRP=4.02365;SAP=17.1973;AB=0.139535;ABP=197.13;RUN=1;RPP=4.16842;RPPR=3.03098;RPL=17.0;RPR=13.0;EPP=13.4334;EPPR=6.50534;DPRA=0.0;ODDS=3.32601;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=59.5333;MQMR=60.0;PAIRED=0.933333;PAIREDR=0.990476;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.3016:51:24:889:6:131:0.0,-0.134533,-127.736:6:15:41:.:.:1:.:.:.:-0.00133861	./1:160.002:172:81:2932:24:724:-46.0383,-23.3508,-463.388:24:17:140:.:.:1:.:.:.:-0.00739735
chr18	23602416	.	C	A	380.437	REJECT	NS=2;DP=223;DPB=313.28;AC=2;AN=2;AF=0.0;RO=105;AO=5;PRO=55.8667;PAO=26.2833;QR=3821;QA=70;PQR=2004.5;PQA=931.75;SRF=56;SRR=49;SAF=5;SAR=0;SRP=4.02365;SAP=13.8677;AB=0.0116279;ABP=359.334;RUN=1;RPP=6.91895;RPPR=3.03098;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=6.50534;DPRA=0.0;ODDS=3.32601;GTI=0;TYPE=snp;CIGAR=15M1X9M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990476;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:14.3016:51:24:889:3:42:0.0,-18.453,-261.55:3:7:41:.:.:1:.:.:.:-0.00133861	./1:160.002:172:81:2932:2:28:-46.0383,-113.688,-890.486:2:1:140:.:.:1:.:.:.:-0.00739735
chr18	23604916	.	T	TA	9984.415	REJECT	NS=2;DP=287;DPB=384.5;AC=4;AN=4;AF=1.0;RO=0;AO=310;PRO=20.0;PAO=26.0;QR=0;QA=11396;PQR=558.5;PQA=781.5;SRF=0;SRR=0;SAF=158;SAR=152;SRP=0.0;SAP=3.26247;AB=0.0;ABP=0.0;RUN=1;RPP=10.1832;RPPR=0.0;RPL=171.0;RPR=139.0;EPP=7.04504;EPPR=0.0;DPRA=0.0;ODDS=54.8065;GTI=0;TYPE=ins;CIGAR=1M1I7M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.983871;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=23604916;HOMLEN=3;HOMSEQ=AAA;SVLEN=1;SVTYPE=INS;BaseQRankSum=-0.492;FS=1.532;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.706;QD=33.205;RPA=3,4;RU=A;SOR=0.544;STR;ClippingRankSum=-0.321	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.5:82:0:0:80:2962:-269.899,-21.9271,0.0:80:99:80:1,80:2720,238,0:1:.:1:.:.:.:-0.00133861	1/1:122.5:245:0:0:230:8434:-775.483,-63.5698,0.0:230:100:236:108,132:9604,737,0:.:1:1:1:.:.:-0.00739735
chr18	23604930	.	T	TA	11748.3	REJECT	NS=2;DP=308;DPB=469.333;AC=4;AN=4;AF=1.0;RO=0;AO=341;PRO=10.0;PAO=15.0;QR=0;QA=12943;PQR=345.5;PQA=519.5;SRF=0;SRR=0;SAF=184;SAR=157;SRP=0.0;SAP=7.65254;AB=0.0;ABP=0.0;RUN=1;RPP=9.1299;RPPR=0.0;RPL=155.0;RPR=186.0;EPP=4.08648;EPPR=0.0;DPRA=0.0;ODDS=56.1207;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.982405;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=23604930;HOMLEN=0;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.617;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.732;QD=29.605;SOR=0.564;ClippingRankSum=-1.493	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:83:0:0:80:3055:-284.121,-22.4979,0.0:83:99:83:1,86:3423,253,0:1:.:1:.:.:.:-0.00133861	1/1:129.501:268:0:0:261:9888:-895.986,-71.1953,0.0:261:100:268:119,156:12144,807,0:.:1:1:1:.:.:-0.00739735
chr18	23605826	.	G	GA	649.438	REJECT	NS=2;DP=317;DPB=397.316;AC=2;AN=4;AF=0.5;RO=212;AO=50;PRO=70.0;PAO=53.0;QR=7777;QA=1601;PQR=2434.83;PQA=1836.83;SRF=114;SRR=98;SAF=28;SAR=22;SRP=5.63246;SAP=4.57376;AB=0.157729;ABP=325.573;RUN=1;RPP=3.0103;RPPR=3.05127;RPL=25.0;RPR=25.0;EPP=14.1282;EPPR=4.03458;DPRA=0.0;ODDS=34.6768;GTI=0;TYPE=ins;CIGAR=1M1I18M;NUMALT=2;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995283;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.123;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.566;QD=0.91;ReadPosRankSum=-1.156;SOR=0.724;ClippingRankSum=-0.533	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.671:81:54:1970:13:428:-19.5579,0.0,-167.768:13:17:77:66,14:130,0,1320:1:.:1:.:.:.:-0.00133861	0/1:134.96:235:158:5807:37:1173:-51.7982,0.0,-513.236:37:18:210:.:.:.:.:1:.:.:.:-0.00739735
chr18	23605826	.	GA	G	649.438	REJECT	NS=2;DP=317;DPB=397.316;AC=2;AN=2;AF=0.0;RO=212;AO=23;PRO=70.0;PAO=50.0;QR=7777;QA=814;PQR=2434.83;PQA=1689.33;SRF=114;SRR=98;SAF=14;SAR=9;SRP=5.63246;SAP=5.3706;AB=0.0725552;ABP=506.086;RUN=1;RPP=3.86001;RPPR=3.05127;RPL=13.0;RPR=10.0;EPP=5.3706;EPPR=4.03458;DPRA=0.0;ODDS=34.6768;GTI=0;TYPE=del;CIGAR=1M1D17M;NUMALT=2;MEANALT=10.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995283;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:128.342:82:54:1970:8:273:-19.5579,-14.2284,-201.881:8:11:75:.:.:1:.:.:.:-0.00133861	./1:134.96:235:158:5807:15:541:-51.7982,-51.7364,-613.504:15:7:210:.:.:1:.:.:.:-0.00739735
chr18	23608187	.	G	T	5977.115	REJECT	NS=2;DP=376;DPB=430.0;AC=2;AN=4;AF=0.5;RO=221;AO=209;PRO=0.0;PAO=0.0;QR=8308;QA=8029;PQR=0.0;PQA=0.0;SRF=109;SRR=112;SAF=104;SAR=105;SRP=3.09873;SAP=3.02069;AB=0.486047;ABP=3.73749;RUN=1;RPP=3.10381;RPPR=3.25594;RPL=106.0;RPR=103.0;EPP=3.27005;EPPR=5.84992;DPRA=0.0;ODDS=310.736;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=0.99095;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8605;Dels=0.0;FS=0.0;HaplotypeScore=7.7147;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2705;QD=16.875;ReadPosRankSum=-0.344;SOR=0.701;ClippingRankSum=0.64	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:59:2224:48:1828:-135.546,0.0,-171.188:48:45:106:57,48:1651,0,2094:1:.:1:.:.:.:-0.00133861	0/1:129.501:323:162:6084:161:6201:-470.313,0.0,-459.751:161:50:323:162,161:5985,0,5751:.:1:1:.:.:.:-0.00739735
chr18	23610558	.	A	C	5591.42	REJECT	NS=2;DP=388;DPB=447.0;AC=2;AN=4;AF=0.5;RO=238;AO=209;PRO=0.0;PAO=0.0;QR=9071;QA=7916;PQR=0.0;PQA=0.0;SRF=133;SRR=105;SAF=101;SAR=108;SRP=10.1634;SAP=3.5194;AB=0.467562;ABP=7.09578;RUN=1;RPP=8.50651;RPPR=4.79857;RPL=116.0;RPR=93.0;EPP=11.7481;EPPR=8.26563;DPRA=0.0;ODDS=386.096;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995215;PAIREDR=0.995798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.541;Dels=0.0;FS=4.977;HaplotypeScore=6.7793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.87;QD=16.83;ReadPosRankSum=0.1275;SOR=0.623;ClippingRankSum=-0.4	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.2855:116:58:2232:59:2229:-168.899,0.0,-169.185:58:50:116:57,58:2052,0,2054:1:.:1:.:.:.:-0.00133861	0/1:117.2855:330:180:6839:150:5687:-422.156,0.0,-525.79:150:45:330:180,150:5376,0,6661:.:1:1:.:.:.:-0.00739735
chr18	36002816	.	T	C	9339.98	REJECT	NS=2;DP=360;DPB=407.0;AC=2;AN=4;AF=0.5;RO=96;AO=311;PRO=0.0;PAO=0.0;QR=3651;QA=11731;PQR=0.0;PQA=0.0;SRF=50;SRR=46;SAF=164;SAR=147;SRP=3.37221;SAP=5.02816;AB=0.764128;ABP=249.635;RUN=1;RPP=24.1315;RPPR=4.45795;RPL=128.0;RPR=183.0;EPP=27.3154;EPPR=16.0391;DPRA=0.0;ODDS=243.542;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9807;MQMR=60.0;PAIRED=0.990354;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5755;Dels=0.0;FS=1.453;HaplotypeScore=8.826;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0.4055;QD=25.685;ReadPosRankSum=1.2765;SOR=0.8015;ClippingRankSum=-0.054	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:90:40:1499:51:1964:-152.135,0.0,-110.283:50:56:90:39,50:1808,0,1274:1:.:1:.:.:.:-0.00133861	0/1:129.501:315:56:2152:260:9767:-792.954,0.0,-108.03:259:82:315:56,258:9877,0,1477:.:1:1:.:.:.:-0.00739735
chr18	42456653	.	G	A	6051.68	REJECT	NS=2;DP=390;DPB=439.0;AC=2;AN=4;AF=0.5;RO=223;AO=215;PRO=0.0;PAO=0.0;QR=8472;QA=8125;PQR=0.0;PQA=0.0;SRF=96;SRR=127;SAF=96;SAR=119;SRP=12.3681;SAP=8.35313;AB=0.489749;ABP=3.41096;RUN=1;RPP=3.2628;RPPR=3.48744;RPL=110.0;RPR=105.0;EPP=8.35313;EPPR=10.109;DPRA=0.0;ODDS=290.556;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.6512;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6925;Dels=0.0;FS=0.3985;HaplotypeScore=5.8346;MLEAC=1;MLEAF=0.5;MQ=60.305;MQRankSum=-0.2635;QD=16.635;ReadPosRankSum=-1.074;SOR=0.6125;ClippingRankSum=-0.356	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:52:1893:46:1707:-127.139,0.0,-143.869:46:47:97:50,46:1508,0,1665:1:.:1:.:.:.:-0.00133861	0/1:129.501:341:171:6579:169:6418:-485.215,0.0,-499.674:169:50:340:171,169:6118,0,6353:.:1:1:.:.:.:-0.00739735
chr18	42456670	.	C	CTCTT	5030.03	REJECT	NS=2;DP=397;DPB=708.333;AC=2;AN=4;AF=0.5;RO=238;AO=193;PRO=12.5;PAO=18.5;QR=8862;QA=6762;PQR=385.5;PQA=599.5;SRF=95;SRR=143;SAF=77;SAR=116;SRP=24.0316;SAP=20.1233;AB=0.446759;ABP=13.6465;RUN=1;RPP=8.96216;RPPR=10.1634;RPL=108.0;RPR=85.0;EPP=8.96216;EPPR=4.79857;DPRA=0.0;ODDS=215.984;GTI=0;TYPE=ins;CIGAR=1M4I2M;NUMALT=1;MEANALT=1.5;LEN=4;MQM=60.5699;MQMR=60.0;PAIRED=0.994819;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=42456670;HOMLEN=0;SVLEN=4;SVTYPE=INS;BaseQRankSum=1.113;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=-0.644;QD=19.97;ReadPosRankSum=-0.8015;SOR=0.651;ClippingRankSum=1.284	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.5315:91:54:2007:36:1234:-94.9941,0.0,-155.523:36:43:90:41,36:1602,0,3036:1:.:1:1:.:.:-0.00133861	0/1:117.5315:352:184:6855:157:5528:-416.936,0.0,-526.175:173:48:341:152,177:11448,0,12227:.:1:1:1:.:.:-0.00739735
chr18	42529996	.	G	C	4546.365	REJECT	NS=2;DP=270;DPB=308.0;AC=2;AN=4;AF=0.5;RO=147;AO=160;PRO=0.0;PAO=0.0;QR=5636;QA=6084;PQR=0.0;PQA=0.0;SRF=68;SRR=79;SAF=82;SAR=78;SRP=4.7977;SAP=3.22745;AB=0.519481;ABP=4.02553;RUN=1;RPP=7.40753;RPPR=12.2428;RPL=71.0;RPR=89.0;EPP=5.67035;EPPR=3.73412;DPRA=0.0;ODDS=232.934;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993197;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8225;Dels=0.0;FS=5.217;HaplotypeScore=4.9323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.769;QD=18.36;ReadPosRankSum=1.115;SOR=0.9405;ClippingRankSum=1.551	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:73:39:1473:35:1350:-101.498,0.0,-112.581:35:47:73:38,35:1293,0,1330:1:.:1:.:.:.:-0.00133861	0/1:129.501:233:108:4163:125:4734:-362.725,0.0,-311.419:125:54:232:107,125:4545,0,3950:.:1:1:.:.:.:-0.00739735
chr18	42532693	.	C	A	3362.74	PASS	SOMATIC;NS=2;DP=428;DPB=428.0;AC=1;AN=3;AF=0.25;RO=303;AO=125;PRO=0.0;PAO=0.0;QR=11505;QA=4783;PQR=0.0;PQA=0.0;SRF=146;SRR=157;SAF=62;SAR=63;SRP=3.87746;SAP=3.02767;AB=0.383436;ABP=41.484;RUN=1;RPP=5.11229;RPPR=3.87746;RPL=68.0;RPR=57.0;EPP=4.41741;EPPR=5.59743;DPRA=3.19608;ODDS=64.6194;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.9967;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.989;Dels=0.0;FS=0.0;HaplotypeScore=5.8657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.287;QD=13.47;ReadPosRankSum=-0.486;SOR=0.67	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:100:102:3887:0:0:0.0,-27.6379,-349.871:0:0:100:98,0:.:0.0:0:.:.:.:0:.:.:0:-0.00133861	0/1:129.501:325:201:7618:125:4783:-341.941,0.0,-596.927:125:38:325:196,120:38.0:0.375:2:4407,0,7473:.:1:1:.:.:1:-0.00739735
chr18	42532923	.	T	C	1964.485	REJECT	NS=2;DP=328;DPB=379.0;AC=2;AN=4;AF=0.5;RO=279;AO=97;PRO=0.0;PAO=0.0;QR=10667;QA=3657;PQR=0.0;PQA=0.0;SRF=133;SRR=146;SAF=45;SAR=52;SRP=4.32564;SAP=4.10723;AB=0.255937;ABP=199.102;RUN=1;RPP=9.47994;RPPR=5.2596;RPL=40.0;RPR=57.0;EPP=8.04722;EPPR=5.81998;DPRA=0.0;ODDS=182.204;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996416;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.845;Dels=0.0;FS=4.4735;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.372;QD=10.76;ReadPosRankSum=0.2265;SOR=1.033;ClippingRankSum=0.387	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:48:1824:53:1941:-147.359,0.0,-136.846:51:51:99:48,50:1753,0,1596:1:.:1:.:.:.:-0.00133861	0/1:129.501:277:231:8843:44:1716:-79.8929,0.0,-720.924:44:16:275:231,44:1113,0,9030:.:1:1:.:.:.:-0.00739735
chr18	42533130	.	A	G	9547.32	REJECT	NS=2;DP=376;DPB=431.0;AC=2;AN=4;AF=0.5;RO=110;AO=320;PRO=0.0;PAO=0.0;QR=4058;QA=11983;PQR=0.0;PQA=0.0;SRF=66;SRR=44;SAF=167;SAR=153;SRP=12.5648;SAP=4.34033;AB=0.742459;ABP=223.085;RUN=1;RPP=6.29465;RPPR=3.32615;RPL=149.0;RPR=171.0;EPP=3.11887;EPPR=5.85295;DPRA=0.0;ODDS=221.886;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9875;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.446;Dels=0.0;FS=3.1455;HaplotypeScore=13.4774;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.975;QD=23.995;ReadPosRankSum=1.18;SOR=0.457;ClippingRankSum=-0.643	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3215:105:55:2005:52:1938:-145.467,0.0,-151.503:51:49:105:52,51:1711,0,1814:1:.:1:.:.:.:-0.00133861	0/1:118.3215:323:55:2053:268:10045:-816.09,0.0,-97.2349:267:83:322:55,266:10221,0,1329:.:1:1:.:.:.:-0.00739735
chr18	42533315	.	T	A	1676.32	PASS	SOMATIC;NS=2;DP=289;DPB=289.0;AC=1;AN=3;AF=0.25;RO=219;AO=70;PRO=0.0;PAO=0.0;QR=8307;QA=2639;PQR=0.0;PQA=0.0;SRF=66;SRR=153;SAF=25;SAR=45;SRP=78.06;SAP=15.4187;AB=0.316742;ABP=67.4765;RUN=1;RPP=38.8706;RPPR=64.8923;RPL=52.0;RPR=18.0;EPP=3.50664;EPPR=3.09954;DPRA=3.25;ODDS=43.4356;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995434;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.994;Dels=0.0;FS=3.59;HaplotypeScore=5.8016;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.039;QD=10.05;ReadPosRankSum=-0.159;SOR=0.456	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:68:68:2595:0:0:0.0,-18.4379,-233.703:0:0:68:68,0:.:0.0:0:.:.:.:0:.:.:0:-0.00133861	0/1:129.501:221:151:5712:70:2639:-177.547,0.0,-454.017:70:32:221:145,67:37.0:0.319:2:2260,0,5741:.:1:1:.:.:1:-0.00739735
chr18	48577782	.	G	C	8319.77	REJECT	NS=2;DP=360;DPB=415.0;AC=3;AN=4;AF=0.75;RO=113;AO=302;PRO=0.0;PAO=0.0;QR=4378;QA=11502;PQR=0.0;PQA=0.0;SRF=44;SRR=69;SAF=104;SAR=198;SRP=15.0207;SAP=66.5438;AB=0.630719;ABP=48.4267;RUN=1;RPP=15.694;RPPR=13.1759;RPL=172.0;RPR=130.0;EPP=30.6498;EPPR=3.49071;DPRA=0.0;ODDS=69.0074;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996689;PAIREDR=0.99115;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.648;Dels=0.0;FS=0.733;HaplotypeScore=8.7561;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.487;QD=25.87;ReadPosRankSum=0.822;SOR=1.313	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:0:0:109:4188:-376.946,-29.5436,0.0:107:100:107:0,106:4427,319,0:1:.:1:.:.:.:-0.00133861	0/1:129.501:305:113:4378:193:7314:-575.002,0.0,-310.927:193:63:305:112,193:7312,0,3965:.:1:1:.:.:.:-0.00739735
chr18	48584855	.	A	AT	557.924	REJECT	NS=2;DP=101;DPB=152.0;AC=2;AN=2;AF=0.0;RO=20;AO=12;PRO=27.5;PAO=26.5;QR=719;QA=252;PQR=977.083;PQA=906.083;SRF=8;SRR=12;SAF=2;SAR=10;SRP=4.74748;SAP=14.5915;AB=0.118812;ABP=130.482;RUN=1;RPP=29.068;RPPR=30.8051;RPL=12.0;RPR=0.0;EPP=14.5915;EPPR=3.0103;DPRA=0.0;ODDS=11.3265;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=4;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.1344:25:1:38:3:46:-21.469,-12.268,-20.0551:3:18:17:.:.:1:.:.:.:-0.00133861	./1:136.397:76:19:681:9:206:-43.7176,-16.7397,-82.8709:9:16:57:.:.:1:.:.:.:-0.00739735
chr18	48584855	.	A	ATT	557.924	REJECT	NS=2;DP=101;DPB=152.0;AC=2;AN=4;AF=0.5;RO=20;AO=30;PRO=27.5;PAO=23.5;QR=719;QA=702;PQR=977.083;PQA=823.083;SRF=8;SRR=12;SAF=8;SAR=22;SRP=4.74748;SAP=17.1973;AB=0.29703;ABP=39.1513;RUN=1;RPP=31.9633;RPPR=30.8051;RPL=25.0;RPR=5.0;EPP=4.16842;EPPR=3.0103;DPRA=0.0;ODDS=11.3265;GTI=0;TYPE=ins;CIGAR=1M2I24M;NUMALT=4;MEANALT=14.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.3645;FS=1.6175;MLEAC=1;MLEAF=0.5;MQ=60.375;MQRankSum=1.34;QD=7.165;RPA=16,18;RU=T;ReadPosRankSum=-0.1375;SOR=0.5925;STR;ClippingRankSum=-0.51	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:59.0672:21:1:38:11:206:-21.469,0.0,-5.67946:12:71:17:4,14:369,0,69:1:.:1:.:.:.:-0.00133861	0/1:117.6985:115:19:681:19:496:-43.7176,0.0,-64.2339:26:38:66:43,33:676,0,931:.:1:1:.:.:.:-0.00739735
chr18	48584855	.	A	TTT	557.924	REJECT	NS=2;DP=101;DPB=152.0;AC=2;AN=2;AF=0.0;RO=20;AO=6;PRO=27.5;PAO=3.0;QR=719;QA=84;PQR=977.083;PQA=67.0;SRF=8;SRR=12;SAF=0;SAR=6;SRP=4.74748;SAP=16.0391;AB=0.0594059;ABP=173.31;RUN=1;RPP=3.0103;RPPR=30.8051;RPL=3.0;RPR=3.0;EPP=3.0103;EPPR=3.0103;DPRA=0.0;ODDS=11.3265;GTI=0;TYPE=complex;CIGAR=1X2I24M;NUMALT=4;MEANALT=14.0;LEN=27;MQM=68.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.1344:25:1:38:2:28:-21.469,-35.7835,-212.338:2:12:17:.:.:1:.:.:.:-0.00133861	./1:136.397:76:19:681:4:56:-43.7176,-99.3074,-797.447:4:7:57:.:.:1:.:.:.:-0.00739735
chr18	48584855	.	AT	A	557.924	REJECT	NS=2;DP=101;DPB=152.0;AC=2;AN=2;AF=0.0;RO=20;AO=6;PRO=27.5;PAO=14.5;QR=719;QA=193;PQR=977.083;PQA=507.75;SRF=8;SRR=12;SAF=1;SAR=5;SRP=4.74748;SAP=8.80089;AB=0.0789474;ABP=120.041;RUN=1;RPP=8.80089;RPPR=30.8051;RPL=5.0;RPR=1.0;EPP=16.0391;EPPR=3.0103;DPRA=0.0;ODDS=11.3265;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=4;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.1344:25:1:38:0:0:-21.469,-24.7296,-62.5174:0:0:17:.:.:1:.:.:.:-0.00133861	./1:136.397:76:19:681:6:193:-43.7176,-46.058,-302.161:6:11:57:.:.:1:.:.:.:-0.00739735
chr18	49867224	.	T	C	12421.5	REJECT	NS=2;DP=332;DPB=378.0;AC=4;AN=4;AF=1.0;RO=0;AO=378;PRO=0.0;PAO=0.0;QR=0;QA=14335;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=167;SAR=211;SRP=0.0;SAP=14.1319;AB=0.0;ABP=0.0;RUN=1;RPP=31.159;RPPR=0.0;RPL=224.0;RPR=154.0;EPP=29.5735;EPPR=0.0;DPRA=0.0;ODDS=60.8611;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8915;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=59.99;QD=33.135;SOR=1.02	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.9575:91:0:0:92:3497:-314.432,-24.5566,0.0:91:100:91:0,90:3764,271,0:1:.:1:.:.:.:-0.00133861	1/1:124.9575:286:0:0:286:10838:-974.453,-77.0367,0.0:286:100:286:0,286:12090,840,0:.:1:1:.:.:.:-0.00739735
chr18	50450240	.	T	G	4245.78	REJECT	NS=2;DP=283;DPB=320.0;AC=2;AN=4;AF=0.5;RO=166;AO=154;PRO=0.0;PAO=0.0;QR=6394;QA=5888;PQR=0.0;PQA=0.0;SRF=52;SRR=114;SAF=44;SAR=110;SRP=53.2943;SAP=64.4319;AB=0.48125;ABP=3.98746;RUN=1;RPP=64.4319;RPPR=44.0328;RPL=110.0;RPR=44.0;EPP=3.0667;EPPR=3.84749;DPRA=0.0;ODDS=228.721;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7995;Dels=0.0;FS=1.1555;HaplotypeScore=2.9241;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0075;QD=16.925;ReadPosRankSum=-0.8125;SOR=0.762;ClippingRankSum=0.179	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.273:72:39:1502:35:1359:-102.304,0.0,-115.185:34:46:72:38,33:1185,0,1389:1:.:1:.:.:.:-0.00133861	0/1:124.273:246:127:4892:119:4529:-340.762,0.0,-373.415:119:48:246:127,119:4349,0,4760:.:1:1:.:.:.:-0.00739735
chr18	50683691	.	G	A	1164.42	PASS	SOMATIC;NS=2;DP=201;DPB=201.0;AC=1;AN=3;AF=0.25;RO=151;AO=50;PRO=0.0;PAO=0.0;QR=5727;QA=1896;PQR=0.0;PQA=0.0;SRF=98;SRR=53;SAF=40;SAR=10;SRP=32.131;SAP=42.0968;AB=0.342466;ABP=34.4818;RUN=1;RPP=47.4821;RPPR=155.574;RPL=9.0;RPR=41.0;EPP=14.1282;EPPR=4.17513;DPRA=2.65455;ODDS=35.3264;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.066;Dels=0.0;FS=8.994;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.982;QD=11.33;ReadPosRankSum=-0.427;SOR=1.451	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.229:54:55:2064:0:0:0.0,-14.9161,-185.962:0:0:54:53,0:.:0.0:0:.:.:.:0:.:.:0:-0.00133861	0/1:129.501:146:96:3663:50:1896:-131.067,0.0,-290.045:50:34:146:95,49:37.0:0.34:2:1683,0,3652:.:1:1:.:.:1:-0.00739735
chr18	50831933	.	C	T	1899.16	PASS	SOMATIC;NS=2;DP=253;DPB=253.0;AC=1;AN=3;AF=0.25;RO=177;AO=76;PRO=0.0;PAO=0.0;QR=6764;QA=2913;PQR=0.0;PQA=0.0;SRF=125;SRR=52;SAF=62;SAR=14;SRP=68.3876;SAP=68.8402;AB=0.383838;ABP=26.2165;RUN=1;RPP=58.3257;RPPR=51.7028;RPL=16.0;RPR=60.0;EPP=10.3247;EPPR=3.31701;DPRA=3.6;ODDS=35.3538;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983051;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.195;Dels=0.0;FS=11.83;HaplotypeScore=2.8822;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.641;QD=13.51;ReadPosRankSum=0.104;SOR=1.569	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.041:54:55:2138:0:0:0.0,-14.928,-192.628:0:0:54:54,0:.:0.0:0:.:.:.:0:.:.:0:-0.00133861	0/1:119.3785:197:122:4626:76:2913:-208.443,0.0,-362.538:76:39:197:118,74:38.0:0.386:2:2689,0,4536:.:1:1:.:.:1:-0.00739735
chr18	50832102	.	A	G	5391.605	REJECT	NS=2;DP=322;DPB=368.0;AC=2;AN=4;AF=0.5;RO=175;AO=193;PRO=0.0;PAO=0.0;QR=6736;QA=7416;PQR=0.0;PQA=0.0;SRF=65;SRR=110;SAF=86;SAR=107;SRP=28.1373;SAP=7.97206;AB=0.524457;ABP=4.92214;RUN=1;RPP=47.6661;RPPR=25.9535;RPL=128.0;RPR=65.0;EPP=6.26188;EPPR=5.80219;DPRA=0.0;ODDS=260.084;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.984456;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.109;Dels=0.0;FS=5.065;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.064;QD=18.545;ReadPosRankSum=0.2165;SOR=0.4095;ClippingRankSum=0.768	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:92:40:1553:52:1984:-153.653,0.0,-114.874:52:57:92:40,52:1700,0,1428:1:.:1:.:.:.:-0.00133861	0/1:129.501:276:135:5183:141:5432:-413.859,0.0,-391.435:141:51:276:135,141:5250,0,4931:.:1:1:.:.:.:-0.00739735
chr18	50929276	.	A	G	1259.2	REJECT	NS=2;DP=287;DPB=325.0;AC=2;AN=4;AF=0.5;RO=255;AO=69;PRO=0.0;PAO=0.0;QR=9799;QA=2617;PQR=0.0;PQA=0.0;SRF=102;SRR=153;SAF=21;SAR=48;SRP=25.1593;SAP=25.9524;AB=0.212308;ABP=236.654;RUN=1;RPP=14.3712;RPPR=45.9373;RPL=44.0;RPR=25.0;EPP=3.79707;EPPR=14.6681;DPRA=0.0;ODDS=124.35;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.984314;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.15;Dels=0.0;FS=2.9185;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5195;QD=9.34;ReadPosRankSum=0.2875;SOR=1.0875;ClippingRankSum=1.055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.529:73:41:1571:33:1256:-93.0487,0.0,-121.398:33:45:72:38,33:1158,0,1410:1:.:1:.:.:.:-0.00133861	0/1:119.529:249:214:8228:36:1361:-54.705,0.0,-672.426:36:14:249:213,36:772,0,8422:.:1:1:.:.:.:-0.00739735
chr18	50936994	.	T	C	7842.280000000001	REJECT	NS=2;DP=334;DPB=378.0;AC=3;AN=4;AF=0.75;RO=103;AO=275;PRO=0.0;PAO=0.0;QR=4022;QA=10511;PQR=0.0;PQA=0.0;SRF=41;SRR=62;SAF=94;SAR=181;SRP=12.3076;SAP=62.7771;AB=0.646048;ABP=56.924;RUN=1;RPP=19.0002;RPPR=6.5732;RPL=160.0;RPR=115.0;EPP=3.08137;EPPR=10.621;DPRA=0.0;ODDS=55.2631;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989091;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.074;Dels=0.0;FS=1.3845;HaplotypeScore=6.7902;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.946;QD=26.105;ReadPosRankSum=-0.333;SOR=1.3185	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.601:87:0:0:87:3317:-298.613,-23.5745,0.0:87:100:87:0,87:3642,261,0:1:.:1:.:.:.:-0.00133861	0/1:120.601:291:103:4022:188:7194:-568.26,0.0,-282.937:188:65:291:103,188:7179,0,3643:.:1:1:.:.:.:-0.00739735
chr18	50937026	.	A	G	5560.96	REJECT	NS=2;DP=250;DPB=281.0;AC=3;AN=4;AF=0.75;RO=84;AO=197;PRO=0.0;PAO=0.0;QR=3241;QA=7524;PQR=0.0;PQA=0.0;SRF=32;SRR=52;SAF=57;SAR=140;SRP=13.3506;SAP=78.9457;AB=0.61991;ABP=30.6106;RUN=1;RPP=49.5812;RPPR=36.513;RPL=131.0;RPR=66.0;EPP=3.90314;EPPR=4.66476;DPRA=0.0;ODDS=38.4249;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979695;PAIREDR=0.988095;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.712;Dels=0.0;FS=3.6375;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.521;QD=26.61;ReadPosRankSum=-0.125;SOR=1.548	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.8535:60:0:0:60:2275:-204.918,-16.2618,0.0:60:100:60:0,60:2480,180,0:1:.:1:.:.:.:-0.00133861	0/1:129.501:220:84:3241:137:5249:-412.313,0.0,-231.7:136:62:220:84,136:5160,0,2986:.:1:1:.:.:.:-0.00739735
chr18	50942653	.	C	T	7728.27	REJECT	NS=2;DP=336;DPB=391.0;AC=3;AN=4;AF=0.75;RO=108;AO=283;PRO=0.0;PAO=0.0;QR=4061;QA=10797;PQR=0.0;PQA=0.0;SRF=39;SRR=69;SAF=111;SAR=172;SRP=21.1059;SAP=31.5617;AB=0.617021;ABP=36.5526;RUN=1;RPP=3.20213;RPPR=3.73412;RPL=144.0;RPR=139.0;EPP=13.5147;EPPR=5.9056;DPRA=0.0;ODDS=68.974;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.196;Dels=0.0;FS=0.2335;HaplotypeScore=9.7254;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=1.685;QD=25.03;ReadPosRankSum=-2.598;SOR=0.8745	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.219:109:0:0:109:4125:-371.266,-29.5291,0.0:109:100:109:0,109:4244,327,0:1:.:1:.:.:.:-0.00133861	0/1:122.219:282:108:4061:174:6672:-523.795,0.0,-288.916:174:62:282:108,174:6632,0,3662:.:1:1:.:.:.:-0.00739735
chr18	60985879	.	T	C	1259.85	REJECT	NS=2;DP=317;DPB=356.0;AC=2;AN=4;AF=0.5;RO=290;AO=66;PRO=0.0;PAO=0.0;QR=11139;QA=2556;PQR=0.0;PQA=0.0;SRF=132;SRR=158;SAF=35;SAR=31;SRP=8.07208;SAP=3.53672;AB=0.185393;ABP=309.066;RUN=1;RPP=5.11597;RPPR=9.74935;RPL=37.0;RPR=29.0;EPP=4.19474;EPPR=16.2188;DPRA=0.0;ODDS=61.6195;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996552;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.7325;Dels=0.0;FS=2.426;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.531;QD=9.27;ReadPosRankSum=0.033;SOR=0.7555;ClippingRankSum=-0.447	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.364:75:41:1551:37:1410:-105.818,0.0,-118.526:36:47:75:38,35:1269,0,1329:1:.:1:.:.:.:-0.00133861	0/1:120.364:278:249:9588:29:1146:-27.7821,0.0,-787.119:29:10:278:249,29:457,0,9888:.:1:1:.:.:.:-0.00739735
chr18	61084121	.	G	A	6547.56	REJECT	NS=2;DP=366;DPB=418.0;AC=2;AN=4;AF=0.5;RO=189;AO=228;PRO=0.0;PAO=0.0;QR=7304;QA=8826;PQR=0.0;PQA=0.0;SRF=96;SRR=93;SAF=103;SAR=125;SRP=3.1137;SAP=7.61992;AB=0.545455;ABP=10.5118;RUN=1;RPP=5.44844;RPPR=3.02179;RPL=122.0;RPR=106.0;EPP=3.35316;EPPR=9.08812;DPRA=0.0;ODDS=276.1;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982456;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6335;Dels=0.0;FS=4.161;HaplotypeScore=6.8323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3485;QD=19.945;ReadPosRankSum=-0.7595;SOR=0.707;ClippingRankSum=1.396	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:43:1643:58:2223:-172.716,0.0,-120.522:57:57:99:42,56:1981,0,1459:1:.:1:.:.:.:-0.00133861	0/1:129.501:316:146:5661:170:6603:-508.289,0.0,-423.56:169:54:315:146,168:6382,0,5395:.:1:1:.:.:.:-0.00739735
chr18	61085648	.	A	AT	922.277	REJECT	NS=2;DP=218;DPB=264.0;AC=2;AN=2;AF=0.0;RO=128;AO=20;PRO=36.8333;PAO=30.8333;QR=4694;QA=612;PQR=1322.83;PQA=1103.83;SRF=46;SRR=82;SAF=6;SAR=14;SRP=24.9965;SAP=9.95901;AB=0.0917431;ABP=318.611;RUN=1;RPP=18.6449;RPPR=8.50684;RPL=16.0;RPR=4.0;EPP=3.0103;EPPR=22.6214;DPRA=0.0;ODDS=41.2509;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.9219;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.355:46:27:973:4:122:-22.7379,-18.0832,-105.433:4:9:43:.:.:1:.:.:.:-0.00133861	./1:133.355:172:101:3721:16:490:-77.3306,-63.411,-381.778:16:10:154:.:.:1:.:.:.:-0.00739735
chr18	61085648	.	AT	A	746.0035	REJECT	NS=2;DP=218;DPB=264.0;AC=2;AN=4;AF=0.5;RO=128;AO=49;PRO=36.8333;PAO=29.3333;QR=4694;QA=1614;PQR=1322.83;PQA=1033.33;SRF=46;SRR=82;SAF=15;SAR=34;SRP=24.9965;SAP=19.0083;AB=0.224771;ABP=146.447;RUN=1;RPP=10.4997;RPPR=8.50684;RPL=31.0;RPR=18.0;EPP=6.59988;EPPR=22.6214;DPRA=0.0;ODDS=41.2509;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=7.5;LEN=1;MQM=60.0;MQMR=59.9219;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.6755;FS=2.416;MLEAC=1;MLEAF=0.5;MQ=60.005;MQRankSum=-0.5325;QD=2.4;RPA=13,12;RU=T;ReadPosRankSum=0.2735;SOR=0.9855;STR;ClippingRankSum=0.701	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.1775:48:27:973:12:403:-22.7379,0.0,-110.32:13:28:47:36,15:216,0,673:1:.:1:.:.:.:-0.00133861	0/1:116.1775:205:101:3721:37:1211:-77.3306,0.0,-318.657:42:25:166:132,47:607,0,2510:.:1:1:.:.:.:-0.00739735
chr18	63003979	.	A	C	13233.7	REJECT	NS=2;DP=349;DPB=398.0;AC=4;AN=4;AF=1.0;RO=0;AO=398;PRO=0.0;PAO=0.0;QR=0;QA=15260;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=165;SAR=233;SRP=0.0;SAP=28.2387;AB=0.0;ABP=0.0;RUN=1;RPP=17.7632;RPPR=0.0;RPL=225.0;RPR=173.0;EPP=4.07967;EPPR=0.0;DPRA=0.0;ODDS=64.8174;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992462;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.933;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.175;SOR=1.144	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:94:0:0:97:3700:-333.044,-26.2748,0.0:94:100:94:0,92:3803,276,0:1:.:1:.:.:.:-0.00133861	1/1:129.501:301:0:0:301:11560:-1039.72,-81.4917,0.0:301:100:301:0,301:12851,885,0:.:1:1:.:.:.:-0.00739735
chr18	67511067	.	A	G	2272.4	PASS	SOMATIC;NS=2;DP=300;DPB=300.0;AC=1;AN=3;AF=0.25;RO=214;AO=86;PRO=0.0;PAO=0.0;QR=8260;QA=3300;PQR=0.0;PQA=0.0;SRF=148;SRR=66;SAF=57;SAR=29;SRP=71.2392;SAP=22.806;AB=0.383929;ABP=29.2231;RUN=1;RPP=15.2311;RPPR=81.5892;RPL=32.0;RPR=54.0;EPP=9.47422;EPPR=3.65971;DPRA=2.94737;ODDS=48.4512;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985981;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.85;Dels=0.0;FS=0.537;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.579;QD=13.49;ReadPosRankSum=0.506;SOR=0.619	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:75:76:2953:0:0:0.0,-20.6161,-265.908:0:0:75:74,0:.:0.0:0:.:.:.:0:.:.:0:-0.00133861	0/1:129.501:223:138:5307:86:3300:-236.171,0.0,-416.745:86:39:223:131,83:38.0:0.391:2:3036,0,5235:.:1:1:.:.:1:-0.00739735
chr18	72033902	.	C	A	1457.045	REJECT	NS=2;DP=347;DPB=399.0;AC=2;AN=4;AF=0.5;RO=315;AO=84;PRO=0.0;PAO=0.0;QR=12120;QA=3192;PQR=0.0;PQA=0.0;SRF=165;SRR=150;SAF=42;SAR=42;SRP=4.56135;SAP=3.0103;AB=0.210526;ABP=293.416;RUN=1;RPP=6.73282;RPPR=3.01719;RPL=36.0;RPR=48.0;EPP=3.42391;EPPR=12.4476;DPRA=0.0;ODDS=181.266;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993651;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.153;Dels=0.0;FS=1.377;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.657;QD=7.845;ReadPosRankSum=0.817;SOR=0.682;ClippingRankSum=-0.416	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:100:65:2456:37:1408:-99.1027,0.0,-193.426:37:36:100:62,37:1210,0,2111:1:.:1:.:.:.:-0.00133861	0/1:129.501:296:250:9664:47:1784:-80.025,0.0,-788.786:47:16:296:249,47:1137,0,9869:.:1:1:.:.:.:-0.00739735
chr18	73511459	.	C	A	10072.585	REJECT	NS=2;DP=268;DPB=308.0;AC=4;AN=4;AF=1.0;RO=0;AO=307;PRO=0.0;PAO=0.0;QR=0;QA=11742;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=100;SRP=0.0;SAP=83.9914;AB=0.0;ABP=0.0;RUN=1;RPP=72.3347;RPPR=0.0;RPL=104.0;RPR=203.0;EPP=32.8946;EPPR=0.0;DPRA=0.0;ODDS=54.2089;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996743;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9993;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.205;SOR=1.59	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.2325:78:0:0:80:2994:-269.562,-21.6676,0.0:78:100:78:0,77:3083,231,0:1:.:1:.:.:.:-0.00133861	1/1:122.2325:228:0:0:227:8748:-786.979,-61.5142,0.0:227:100:227:0,227:9831,683,0:.:1:1:.:.:.:-0.00739735
chr18	75012021	.	C	T	5531.780000000001	REJECT	NS=2;DP=375;DPB=429.0;AC=2;AN=4;AF=0.5;RO=226;AO=203;PRO=0.0;PAO=0.0;QR=8747;QA=7783;PQR=0.0;PQA=0.0;SRF=93;SRR=133;SAF=86;SAR=117;SRP=18.3836;SAP=13.29;AB=0.473193;ABP=5.68794;RUN=1;RPP=14.6592;RPPR=4.39389;RPL=85.0;RPR=118.0;EPP=12.0064;EPPR=7.66071;DPRA=0.0;ODDS=346.112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986726;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.538;Dels=0.0;FS=0.5685;HaplotypeScore=6.922;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.3345;QD=17.205;ReadPosRankSum=0.7155;SOR=0.6325;ClippingRankSum=-0.844	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0415:106:52:2006:55:2111:-160.998,0.0,-151.561:54:51:106:52,54:1920,0,1780:1:.:1:.:.:.:-0.00133861	0/1:119.0415:321:174:6741:148:5672:-422.929,0.0,-519.112:148:46:321:173,148:5344,0,6554:.:1:1:.:.:.:-0.00739735
chr19	2190947	.	TTGG	T	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:25,0:25:0.24,0.0:60.0,0.0:37.0439,0.0:0.0,0.0:0,0:0,0:23,2,0,0:0:0:25:.:.:.:.:0:.:0.00145514	0/1:30,13:43:0.2,0.153846:60.0,60.0:38.1809,37.0231:0.0,0.00769231:75,6:25,6:26,4,13,0:13:30:43:.:.:.:.:1:.:-0.483792
chr19	2215467	.	C	T	1478.775	REJECT	NS=2;DP=290;DPB=334.0;AC=2;AN=4;AF=0.5;RO=259;AO=75;PRO=0.0;PAO=0.0;QR=9850;QA=2802;PQR=0.0;PQA=0.0;SRF=148;SRR=111;SAF=46;SAR=29;SRP=14.4881;SAP=11.3777;AB=0.224551;ABP=223.122;RUN=1;RPP=18.3264;RPPR=12.1405;RPL=26.0;RPR=49.0;EPP=3.73412;EPPR=4.42721;DPRA=0.0;ODDS=94.0406;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973333;PAIREDR=0.992278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.818;Dels=0.0;FS=2.376;HaplotypeScore=8.784;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.426;QD=9.465;ReadPosRankSum=-0.893;SOR=0.9885;ClippingRankSum=1.731	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:43:1612:43:1577:-118.678,0.0,-121.849:42:50:85:42,42:1447,0,1436:1:.:1:.:.:.:0.00145514	0/1:129.501:247:216:8238:32:1225:-43.0514,0.0,-673.869:32:13:247:215,32:629,0,8419:.:1:1:.:.:.:-25.2792
chr19	2226676	.	G	A	6177.765	REJECT	NS=2;DP=362;DPB=412.0;AC=2;AN=4;AF=0.5;RO=196;AO=216;PRO=0.0;PAO=0.0;QR=7532;QA=8225;PQR=0.0;PQA=0.0;SRF=78;SRR=118;SAF=105;SAR=111;SRP=20.7366;SAP=3.37221;AB=0.524272;ABP=5.11853;RUN=1;RPP=4.01561;RPPR=6.59988;RPL=113.0;RPR=103.0;EPP=3.17115;EPPR=3.40914;DPRA=0.0;ODDS=324.679;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.979592;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.735;Dels=0.0;FS=5.315;HaplotypeScore=3.9462;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0675;QD=18.465;ReadPosRankSum=-0.2735;SOR=0.4165;ClippingRankSum=2.201	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:49:1891:49:1868:-141.582,0.0,-143.662:47:49:96:49,46:1675,0,1714:1:.:1:.:.:.:0.00145514	0/1:129.501:313:147:5641:167:6357:-486.745,0.0,-422.359:167:53:313:146,167:6163,0,5350:.:1:1:.:.:.:-0.216332
chr19	2226772	.	G	C	6257.64	REJECT	NS=2;DP=397;DPB=457.0;AC=2;AN=4;AF=0.5;RO=231;AO=226;PRO=0.0;PAO=0.0;QR=8770;QA=8474;PQR=0.0;PQA=0.0;SRF=116;SRR=115;SAF=109;SAR=117;SRP=3.0197;SAP=3.62523;AB=0.49453;ABP=3.12909;RUN=1;RPP=12.8492;RPPR=13.2472;RPL=129.0;RPR=97.0;EPP=3.3562;EPPR=9.86313;DPRA=0.0;ODDS=336.974;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9248;MQMR=60.0;PAIRED=0.99115;PAIREDR=0.991342;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3625;Dels=0.0;FS=0.5425;HaplotypeScore=10.6551;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.56;QD=16.825;ReadPosRankSum=-0.6975;SOR=0.742;ClippingRankSum=0.458	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:65:2504:54:1996:-147.393,0.0,-193.507:53:44:118:65,52:1812,0,2344:1:.:1:.:.:.:0.00145514	0/1:129.501:337:166:6266:172:6478:-491.164,0.0,-472.492:171:51:337:166,171:6230,0,5992:.:1:1:.:.:.:-0.216332
chr19	2227926	.	T	C	187.77	PASS	DP=63;AC=1;AN=4;AF=0.5;BaseQRankSum=-3.733;FS=56.185;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.989;QD=2.98;ReadPosRankSum=-2.539;SOR=5.131;ClippingRankSum=0.543	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:50,12:62:99.0:216,0,2695:12:19:62:1:.:.:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.216332
chr19	2227932	.	G	C	150.77	PASS	DP=62;AC=1;AN=4;AF=0.5;BaseQRankSum=-4.017;FS=50.57;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.608;QD=2.43;ReadPosRankSum=-3.243;SOR=4.971;ClippingRankSum=0.921	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:51,11:62:99.0:179,0,3249:11:18:62:1:.:.:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.216332
chr19	2227934	.	T	C	148.77	PASS	DP=64;AC=1;AN=4;AF=0.5;BaseQRankSum=-4.324;FS=49.834;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.053;QD=2.32;ReadPosRankSum=-3.113;SOR=4.971;ClippingRankSum=0.712	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,11:64:99.0:177,0,3245:11:17:64:1:.:.:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.216332
chr19	2227935	.	G	T	148.77	PASS	DP=64;AC=1;AN=4;AF=0.5;BaseQRankSum=-4.733;FS=47.561;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.089;QD=2.32;ReadPosRankSum=-3.451;SOR=4.971;ClippingRankSum=0.249	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:53,11:64:99.0:177,0,3245:11:17:64:1:.:.:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.216332
chr19	2227941	.	G	C	139.77	PASS	DP=65;AC=1;AN=4;AF=0.5;BaseQRankSum=-2.213;FS=38.338;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.218;QD=2.15;ReadPosRankSum=-4.09;SOR=4.608;ClippingRankSum=-0.959	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:56,9:65:99.0:168,0,3301:9:14:65:1:.:.:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.216332
chr19	3110349	.	T	G	1074.28	PASS	SOMATIC;NS=2;DP=246;DPB=246.0;AC=1;AN=3;AF=0.25;RO=196;AO=50;PRO=0.0;PAO=0.0;QR=7536;QA=1877;PQR=0.0;PQA=0.0;SRF=55;SRR=141;SAF=9;SAR=41;SRP=84.9501;SAP=47.4821;AB=0.277778;ABP=80.2182;RUN=1;RPP=32.3686;RPPR=20.7366;RPL=38.0;RPR=12.0;EPP=9.26414;EPPR=4.11819;DPRA=2.72727;ODDS=42.2131;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.98;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.736;Dels=0.0;FS=4.836;HaplotypeScore=5.8349;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.873;QD=8.47;ReadPosRankSum=-0.329;SOR=1.228	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.396:66:66:2548:0:0:0.0,-17.907,-229.493:0:0:66:66,0:.:0.0:0:.:.:.:0:.:.:0:0.00145514	0/1:120.698:179:130:4988:50:1877:-120.491,0.0,-400.013:49:28:179:127,48:38.0:0.279:2:1544,0,5051:.:1:1:.:.:1:-0.216332
chr19	3113305	.	G	C	8137.185	REJECT	NS=2;DP=218;DPB=253.0;AC=4;AN=4;AF=1.0;RO=0;AO=253;PRO=0.0;PAO=0.0;QR=0;QA=9649;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=180;SAR=73;SRP=0.0;SAP=101.276;AB=0.0;ABP=0.0;RUN=1;RPP=80.4709;RPPR=0.0;RPL=79.0;RPR=174.0;EPP=11.2585;EPPR=0.0;DPRA=0.0;ODDS=46.7601;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996047;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.355;SOR=1.944	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.1775:67:0:0:68:2576:-232.002,-18.4326,0.0:67:100:67:0,67:2805,201,0:1:.:1:.:.:.:0.00145514	1/1:122.1775:184:0:0:185:7073:-636.288,-50.0719,0.0:184:100:184:0,184:7847,542,0:.:1:1:.:.:.:-0.216332
chr19	3119184	.	T	G	8604.135	REJECT	NS=2;DP=231;DPB=262.0;AC=4;AN=4;AF=1.0;RO=0;AO=260;PRO=0.0;PAO=0.0;QR=0;QA=9848;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=121;SAR=139;SRP=0.0;SAP=5.71629;AB=0.0;ABP=0.0;RUN=1;RPP=46.3061;RPPR=0.0;RPL=94.0;RPR=166.0;EPP=10.5269;EPPR=0.0;DPRA=0.0;ODDS=42.34;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996154;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9574;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.655;SOR=0.863	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:121.8515:60:0:0:61:2272:-204.626,-16.5129,0.0:60:100:60:0,60:2449,180,0:1:.:1:.:.:.:0.00145514	1/1:121.8515:200:0:0:199:7576:-681.531,-53.8687,0.0:198:100:198:0,198:8468,587,0:.:1:1:.:.:.:-0.216332
chr19	3119239	.	C	T	2753.76	PASS	SOMATIC;NS=2;DP=384;DPB=384.0;AC=1;AN=3;AF=0.25;RO=278;AO=106;PRO=0.0;PAO=0.0;QR=10673;QA=4007;PQR=0.0;PQA=0.0;SRF=134;SRR=144;SAF=52;SAR=54;SRP=3.79141;SAP=3.09224;AB=0.363014;ABP=50.6042;RUN=1;RPP=9.64763;RPPR=11.0088;RPL=44.0;RPR=62.0;EPP=3.74778;EPPR=9.13416;DPRA=3.17391;ODDS=58.3758;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8058;PAIRED=1.0;PAIREDR=0.996403;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.794;Dels=0.0;FS=2.038;HaplotypeScore=2.9454;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.319;QD=12.17;ReadPosRankSum=2.405;SOR=0.558	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:90:92:3529:0:0:0.0,-24.9263,-317.036:0:0:90:89,0:.:0.0:0:.:.:.:0:.:.:0:0.00145514	0/1:129.501:291:186:7144:106:4007:-281.328,0.0,-563.537:106:36:291:178,102:37.0:0.365:2:3571,0,7107:.:1:1:.:.:1:-0.216332
chr19	3121908	.	C	G	1457.58	PASS	SOMATIC;NS=2;DP=238;DPB=238.0;AC=1;AN=3;AF=0.25;RO=178;AO=60;PRO=0.0;PAO=0.0;QR=6773;QA=2283;PQR=0.0;PQA=0.0;SRF=148;SRR=30;SAF=51;SAR=9;SRP=172.873;SAP=66.8516;AB=0.340909;ABP=41.702;RUN=1;RPP=3.15506;RPPR=10.0371;RPL=29.0;RPR=31.0;EPP=5.32654;EPPR=3.20549;DPRA=2.83871;ODDS=39.6517;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983333;PAIREDR=0.994382;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.039;Dels=0.0;FS=0.0;HaplotypeScore=4.8367;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.577;QD=11.63;ReadPosRankSum=0.35;SOR=0.639	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:61:62:2358:0:0:0.0,-16.7945,-212.366:0:0:61:61,0:.:0.0:0:.:.:.:0:.:.:0:0.00145514	0/1:129.501:175:116:4415:60:2283:-157.746,0.0,-349.533:60:34:175:115,59:38.0:0.335:2:2064,0,4357:.:1:1:.:.:1:-0.216332
chr19	4099187	.	T	C	1495.92	PASS	SOMATIC;NS=2;DP=214;DPB=214.0;AC=1;AN=3;AF=0.25;RO=155;AO=59;PRO=0.0;PAO=0.0;QR=5894;QA=2269;PQR=0.0;PQA=0.0;SRF=127;SRR=28;SAF=47;SAR=12;SRP=140.317;SAP=48.096;AB=0.364198;ABP=28.9607;RUN=1;RPP=11.2913;RPPR=65.8989;RPL=22.0;RPR=37.0;EPP=5.99147;EPPR=10.4213;DPRA=3.11538;ODDS=33.4356;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987097;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.167;Dels=0.0;FS=0.0;HaplotypeScore=2.8603;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.31;QD=12.81;ReadPosRankSum=-0.468;SOR=0.684	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.721:51:52:1967:0:0:0.0,-14.0949,-177.226:0:0:51:51,0:.:0.0:0:.:.:.:0:.:.:0:0.00145514	0/1:122.701:161:103:3927:59:2269:-160.267,0.0,-309.449:59:37:161:100,58:38.0:0.365:2:2090,0,3853:.:1:1:.:.:1:-0.216332
chr19	4101062	.	G	T	3396.17	PASS	SOMATIC;NS=2;DP=527;DPB=527.0;AC=1;AN=3;AF=0.25;RO=390;AO=137;PRO=0.0;PAO=0.0;QR=15044;QA=5260;PQR=0.0;PQA=0.0;SRF=228;SRR=162;SAF=77;SAR=60;SRP=27.264;SAP=7.591;AB=0.336634;ABP=96.6631;RUN=1;RPP=3.40655;RPPR=8.02139;RPL=66.0;RPR=71.0;EPP=3.15295;EPPR=6.77419;DPRA=0.0;ODDS=74.5746;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=50.9197;MQMR=52.6051;PAIRED=1.0;PAIREDR=0.994872;technology.ILLUMINA=1.0;MQ0=2;VT=SNP;BaseQRankSum=-0.179;Dels=0.0;FS=0.563;HaplotypeScore=3.9302;MLEAC=1;MLEAF=0.5;MQ=53.17;MQRankSum=0.355;QD=11.23;ReadPosRankSum=1.637;SOR=0.588	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.243:120:122:4725:1:16:0.0,-31.9046,-412.686:1:1:120:116,1:.:0.008547:0:.:.:.:0:.:.:0:0.00145514	0/1:118.6215:404:268:10319:136:5244:-345.446,0.0,-800.264:136:34:404:258,131:38.0:0.339:2:4588,0,10389:.:1:1:.:.:1:-0.216332
chr19	4102449	.	G	A	979.343	REJECT	NS=1;DP=93;DPB=93.0;AC=1;AN=4;AF=0.5;RO=55;AO=38;PRO=0.0;PAO=0.0;QR=2098;QA=1423;PQR=0.0;PQA=0.0;SRF=19;SRR=36;SAF=16;SAR=22;SRP=14.4204;SAP=5.06748;AB=0.408602;ABP=9.75821;RUN=1;RPP=3.9246;RPPR=6.20829;RPL=21.0;RPR=17.0;EPP=3.0103;EPPR=6.20829;DPRA=0.0;ODDS=225.502;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=2.516;FS=4.109;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.21;QD=13.82;ReadPosRankSum=2.804;SOR=0.386;ClippingRankSum=1.462	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.621:91:55:2098:38:1423:-102.897,0.0,-163.672:37:40:91:54,36:1272,0,1959:1:.:1:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.216332
chr19	7501602	.	G	A	5937.675	REJECT	NS=2;DP=371;DPB=423.0;AC=2;AN=4;AF=0.5;RO=214;AO=209;PRO=0.0;PAO=0.0;QR=8258;QA=8068;PQR=0.0;PQA=0.0;SRF=117;SRR=97;SAF=113;SAR=96;SRP=7.06913;SAP=6.01296;AB=0.49409;ABP=3.13864;RUN=1;RPP=3.10381;RPPR=10.9656;RPL=106.0;RPR=103.0;EPP=8.50651;EPPR=4.99913;DPRA=0.0;ODDS=337.827;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.985646;PAIREDR=0.995327;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.099;Dels=0.0;FS=2.245;HaplotypeScore=5.9605;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7245;QD=17.665;ReadPosRankSum=0.881;SOR=0.805;ClippingRankSum=0.377	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.273:101:51:1986:51:1948:-147.693,0.0,-151.115:50:50:101:51,50:1750,0,1842:1:.:1:.:.:.:0.00145514	0/1:119.273:320:163:6272:158:6120:-463.498,0.0,-477.184:157:49:320:162,157:5861,0,6034:.:1:1:.:.:.:-0.216332
chr19	7501616	.	A	G	3233.84	PASS	SOMATIC;NS=2;DP=433;DPB=433.0;AC=1;AN=3;AF=0.25;RO=313;AO=120;PRO=0.0;PAO=0.0;QR=11947;QA=4650;PQR=0.0;PQA=0.0;SRF=164;SRR=149;SAF=59;SAR=61;SRP=4.57126;SAP=3.08268;AB=0.366972;ABP=53.2729;RUN=1;RPP=4.16842;RPPR=5.01527;RPL=56.0;RPR=64.0;EPP=11.7686;EPPR=6.06979;DPRA=3.08491;ODDS=67.1567;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991667;PAIREDR=0.996805;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.45;Dels=0.0;FS=0.0;HaplotypeScore=4.9609;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.312;QD=12.87;ReadPosRankSum=1.458;SOR=0.704	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.417:104:106:4057:0:0:0.0,-28.7398,-365.178:0:0:104:102,0:.:0.0:0:.:.:.:0:.:.:0:0.00145514	0/1:120.7085:325:207:7890:120:4650:-329.67,0.0,-621.099:119:37:325:199,83:38.0:0.199:2:4211,0,7820:.:1:1:.:.:1:-0.216332
chr19	7501651	.	T	C	3369.77	PASS	SOMATIC;DP=304;AC=1;AN=3;AF=0.5;MQ0=0;VT=SNP;BaseQRankSum=2.535;Dels=0.0;FS=0.448;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.061;QD=11.08;ReadPosRankSum=0.482;SOR=0.65	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:93,0:.:93:0.0:0:0:0:93:.:.:.:.:.:.:.:0:0.00145514	0/1:194,65:34.0:259:0.126:2:65:23:259:99.0:3398,0,7455:.:1:.:.:.:1:-0.216332
chr19	7501651	.	TTGA	CTGG	2592.12	PASS	SOMATIC;NS=2;DP=398;DPB=404.5;AC=1;AN=4;AF=0.25;RO=295;AO=103;PRO=11.0;PAO=1.0;QR=11117;QA=3855;PQR=388.0;PQA=39.0;SRF=129;SRR=166;SAF=42;SAR=61;SRP=13.0874;SAP=10.621;AB=0.342193;ABP=68.1184;RUN=1;RPP=12.3076;RPPR=6.90423;RPL=62.0;RPR=41.0;EPP=10.621;EPPR=14.2063;DPRA=3.10309;ODDS=64.6554;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=1;MEANALT=1.0;LEN=4;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99661;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:160.002:97:97:3662:0:0:0.0,-27.6535,-344.799:0:0:97:.:.:0:.:.:.:0.00145514	0/1:160.002:301:198:7455:103:3855:-266.847,0.0,-607.031:103:34:301:.:.:1:.:.:.:-0.216332
chr19	7501654	.	A	G	3565.77	PASS	SOMATIC;DP=304;AC=1;AN=3;AF=0.5;MQ0=0;VT=SNP;BaseQRankSum=3.122;Dels=0.0;FS=0.0;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.34;QD=11.73;ReadPosRankSum=-0.313;SOR=0.677	GT:AD:BQ:DP:FA:SS:GMIMUT:GMIMAF:GMICOV:GQ:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:92,0:.:92:0.0:0:0:0:92:.:.:.:.:.:.:.:0:0.00145514	0/1:192,67:36.0:260:0.139:2:67:24:260:99.0:3594,0,7446:.:1:.:.:.:1:-0.216332
chr19	9001373	.	C	T	89.4467	REJECT	NS=2;DP=385;DPB=385.0;AC=1;AN=4;AF=0.25;RO=369;AO=16;PRO=0.0;PAO=0.0;QR=14040;QA=621;PQR=0.0;PQA=0.0;SRF=194;SRR=175;SAF=9;SAR=7;SRP=5.13469;SAP=3.55317;AB=0.122222;ABP=114.576;RUN=1;RPP=7.89611;RPPR=7.95937;RPL=5.0;RPR=11.0;EPP=3.0103;EPPR=7.95937;DPRA=0.0;ODDS=20.5959;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.1084;PAIRED=1.0;PAIREDR=0.98645;technology.ILLUMINA=1.0;BaseQRankSum=1.319;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=-0.078;QD=2.17;ReadPosRankSum=2.004;SOR=0.83;ClippingRankSum=-0.181	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:94.22335:88:79:3009:11:423:-13.6841,0.0,-246.499:11:12:88:75,11:217,0,2902:1:.:1:.:.:.:0.00145514	0/0:160.002:295:290:11031:5:198:0.0,-61.7065,-973.506:5:2:295:.:.:.:.:0:.:.:.:-0.216332
chr19	10471789	.	A	T	5410.275	REJECT	NS=2;DP=368;DPB=421.0;AC=2;AN=4;AF=0.5;RO=226;AO=195;PRO=0.0;PAO=0.0;QR=8783;QA=7477;PQR=0.0;PQA=0.0;SRF=92;SRR=134;SAF=80;SAR=115;SRP=19.9593;SAP=16.6516;AB=0.463183;ABP=7.96703;RUN=1;RPP=13.7118;RPPR=14.1175;RPL=113.0;RPR=82.0;EPP=12.3755;EPPR=9.5055;DPRA=0.0;ODDS=309.121;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979487;PAIREDR=0.995575;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.9385;Dels=0.0;FS=5.939;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2115;QD=15.54;ReadPosRankSum=1.258;SOR=1.0025;ClippingRankSum=0.442	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.283:102:55:2116:49:1827:-136.269,0.0,-162.291:48:47:102:53,47:1444,0,1903:1:.:1:.:.:.:0.00145514	0/1:118.283:316:171:6667:146:5650:-422.31,0.0,-513.761:145:46:316:170,145:5357,0,6472:.:1:1:.:.:.:-0.216332
chr19	10600442	.	G	C	5115.29	REJECT	NS=2;DP=328;DPB=369.0;AC=2;AN=4;AF=0.5;RO=190;AO=179;PRO=0.0;PAO=0.0;QR=7233;QA=6880;PQR=0.0;PQA=0.0;SRF=91;SRR=99;SAF=88;SAR=91;SRP=3.74174;SAP=3.11948;AB=0.485095;ABP=3.72235;RUN=1;RPP=17.8709;RPPR=5.93607;RPL=107.0;RPR=72.0;EPP=3.11948;EPPR=3.05602;DPRA=0.0;ODDS=242.332;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994413;PAIREDR=0.994737;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.361;Dels=0.0;FS=1.404;HaplotypeScore=5.8622;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.738;QD=16.435;ReadPosRankSum=1.2325;SOR=0.5565;ClippingRankSum=-0.798	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.0865:80:44:1672:37:1415:-105.435,0.0,-128.601:36:45:80:44,36:1220,0,1570:1:.:1:.:.:.:0.00145514	0/1:120.0865:287:146:5561:142:5465:-413.58,0.0,-422.209:142:49:287:145,142:5240,0,5270:.:1:1:.:.:.:-0.216332
chr19	11105608	.	T	C	5461.34	REJECT	NS=2;DP=376;DPB=429.0;AC=2;AN=4;AF=0.5;RO=234;AO=195;PRO=0.0;PAO=0.0;QR=8906;QA=7464;PQR=0.0;PQA=0.0;SRF=96;SRR=138;SAF=73;SAR=122;SRP=19.3799;SAP=29.7472;AB=0.454545;ABP=10.7092;RUN=1;RPP=3.11052;RPPR=12.5128;RPL=99.0;RPR=96.0;EPP=7.03031;EPPR=15.0369;DPRA=0.0;ODDS=265.696;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994872;PAIREDR=0.995726;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8675;Dels=0.0;FS=2.1035;HaplotypeScore=9.8555;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.408;QD=15.4;ReadPosRankSum=-0.479;SOR=0.8875;ClippingRankSum=-0.73	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.741:102:61:2341:43:1622:-117.81,0.0,-182.548:42:41:102:60,41:1414,0,2121:1:.:1:.:.:.:0.00145514	0/1:118.741:324:173:6565:152:5842:-437.455,0.0,-502.478:151:47:324:172,151:5546,0,6305:.:1:1:.:.:.:-0.216332
chr19	11107133	.	T	C	5426.73	REJECT	NS=2;DP=328;DPB=372.0;AC=2;AN=4;AF=0.5;RO=182;AO=190;PRO=0.0;PAO=0.0;QR=6984;QA=7227;PQR=0.0;PQA=0.0;SRF=113;SRR=69;SAF=110;SAR=80;SRP=26.109;SAP=13.2962;AB=0.510753;ABP=3.38389;RUN=1;RPP=3.42174;RPPR=11.0758;RPL=98.0;RPR=92.0;EPP=3.42174;EPPR=18.4731;DPRA=0.0;ODDS=247.187;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9451;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.633;Dels=0.0;FS=3.1995;HaplotypeScore=5.8371;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=0.171;QD=17.56;ReadPosRankSum=0.6335;SOR=0.63;ClippingRankSum=-0.396	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:49:1876:38:1462:-108.042,0.0,-145.306:37:44:85:47,37:1344,0,1762:1:.:1:.:.:.:0.00145514	0/1:129.501:285:133:5108:152:5765:-441.756,0.0,-382.294:152:53:285:133,152:5574,0,4875:.:1:1:.:.:.:-0.216332
chr19	11136215	.	C	G	749.124	REJECT	NS=1;DP=57;DPB=57.0;AC=1;AN=4;AF=0.5;RO=27;AO=30;PRO=0.0;PAO=0.0;QR=998;QA=1088;PQR=0.0;PQA=0.0;SRF=8;SRR=19;SAF=6;SAR=24;SRP=12.7417;SAP=26.4622;AB=0.526316;ABP=3.35316;RUN=1;RPP=10.2485;RPPR=6.95112;RPL=20.0;RPR=10.0;EPP=3.29983;EPPR=9.52472;DPRA=0.0;ODDS=156.656;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.966667;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.598;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.295;QD=18.38;ReadPosRankSum=-0.834;SOR=1.058;ClippingRankSum=-1.256	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:27:998:30:1088:-82.591,0.0,-74.4747:29:53:56:26,29:1039,0,867:1:.:1:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.216332
chr19	11170839	.	T	C	907.582	REJECT	NS=1;DP=93;DPB=93.0;AC=1;AN=4;AF=0.5;RO=56;AO=36;PRO=0.0;PAO=0.0;QR=2068;QA=1338;PQR=0.0;PQA=0.0;SRF=17;SRR=39;SAF=17;SAR=19;SRP=21.778;SAP=3.25157;AB=0.387097;ABP=13.3073;RUN=1;RPP=3.9754;RPPR=3.16541;RPL=20.0;RPR=16.0;EPP=3.25157;EPPR=3.0103;DPRA=0.0;ODDS=208.979;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.982143;technology.ILLUMINA=1.0;BaseQRankSum=1.074;FS=9.164;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.083;QD=12.59;ReadPosRankSum=1.083;SOR=0.221;ClippingRankSum=-2.52	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.2185:91:56:2068:36:1338:-95.5369,0.0,-161.256:36:39:90:53,36:1161,0,1816:1:.:1:.:.:.:0.00145514	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.216332
chr19	13054781	.	G	T	5388.72	REJECT	NS=2;DP=320;DPB=366.0;AC=2;AN=4;AF=0.5;RO=177;AO=188;PRO=0.0;PAO=0.0;QR=6739;QA=7198;PQR=0.0;PQA=0.0;SRF=61;SRR=116;SAF=69;SAR=119;SRP=40.1216;SAP=31.8863;AB=0.513661;ABP=3.6036;RUN=1;RPP=4.67356;RPPR=25.6942;RPL=88.0;RPR=100.0;EPP=10.8184;EPPR=3.02257;DPRA=0.0;ODDS=242.779;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9574;MQMR=60.0;PAIRED=0.968085;PAIREDR=0.988701;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6215;Dels=0.0;FS=0.6805;HaplotypeScore=6.9321;MLEAC=1;MLEAF=0.5;MQ=59.955;MQRankSum=0.858;QD=17.47;ReadPosRankSum=1.178;SOR=0.7465;ClippingRankSum=-0.511	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2245:85:49:1835:38:1454:-107.342,0.0,-141.619:37:43:85:48,36:1303,0,1729:1:.:1:.:.:.:0.00145514	0/1:119.2245:277:128:4904:150:5744:-441.389,0.0,-365.814:148:54:276:127,147:5512,0,4615:.:1:1:.:.:.:-0.216332
chr19	14218639	.	G	A	5309.725	REJECT	NS=2;DP=344;DPB=400.0;AC=2;AN=4;AF=0.5;RO=211;AO=189;PRO=0.0;PAO=0.0;QR=7958;QA=7236;PQR=0.0;PQA=0.0;SRF=116;SRR=95;SAF=104;SAR=85;SRP=7.54878;SAP=7.15793;AB=0.4725;ABP=5.63778;RUN=1;RPP=5.59539;RPPR=3.02059;RPL=102.0;RPR=87.0;EPP=4.95199;EPPR=7.54878;DPRA=0.0;ODDS=287.159;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3735;Dels=0.0;FS=0.3635;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1465;QD=16.325;ReadPosRankSum=0.708;SOR=0.7385;ClippingRankSum=0.471	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.6185:109:67:2601:45:1729:-125.253,0.0,-203.732:44:41:109:62,44:1552,0,2299:1:.:1:.:.:.:0.00145514	0/1:117.6185:288:144:5357:144:5507:-417.39,0.0,-403.895:144:50:288:144,144:5290,0,5103:.:1:1:.:.:.:-0.216332
chr19	14219413	.	G	A	131.171	REJECT	NS=2;DP=26;DPB=28.0;AC=2;AN=4;AF=0.5;RO=20;AO=8;PRO=0.0;PAO=0.0;QR=705;QA=299;PQR=0.0;PQA=0.0;SRF=0;SRR=20;SAF=0;SAR=8;SRP=46.4397;SAP=20.3821;AB=0.285714;ABP=14.1779;RUN=1;RPP=3.0103;RPPR=3.44459;RPL=4.0;RPR=4.0;EPP=3.0103;EPPR=3.44459;DPRA=0.0;ODDS=11.3787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=50.25;MQMR=57.15;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.5295;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=55.905;MQRankSum=-0.1835;QD=9.28;ReadPosRankSum=-0.95;SOR=0.41;ClippingRankSum=-1.026	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:62.2798:4:2:80:2:80:-6.08572,0.0,-6.27822:2:50:4:2,2:77,0,77:1:.:1:.:.:.:-4.35652	0/1:100.0505:24:18:625:6:219:-12.8669,0.0,-49.6539:6:25:24:18,6:181,0,605:.:1:1:.:.:.:-0.216332
chr19	14219546	.	AT	A	12.048	REJECT	SOMATIC;NS=2;DP=9;DPB=10.9375;AC=1;AN=4;AF=0.25;RO=5;AO=2;PRO=3.5;PAO=2.5;QR=182;QA=67;PQR=96.5;PQA=77.5;SRF=1;SRR=4;SAF=1;SAR=1;SRP=6.91895;SAP=3.0103;AB=0.285714;ABP=5.80219;RUN=1;RPP=7.35324;RPPR=3.44459;RPL=0.0;RPR=2.0;EPP=3.0103;EPPR=6.91895;DPRA=3.5;ODDS=1.6392;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.8;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.1579:2:1:39:0:0:0.0,-0.285926,-3.70165:0:0:1:.:.:0:.:.:.:-4.35652	0/1:12.048:7:4:143:2:67:-4.17872,0.0,-12.8048:2:33:6:.:.:1:.:.:.:-0.216332
chr19	14222209	.	C	A	1455.37	REJECT	NS=2;DP=234;DPB=341.042;AC=2;AN=2;AF=0.0;RO=84;AO=5;PRO=51.2167;PAO=35.4333;QR=3024;QA=60;PQR=1732.15;PQA=1173.13;SRF=42;SRR=42;SAF=0;SAR=5;SRP=3.0103;SAP=13.8677;AB=0.0213675;ABP=468.633;RUN=1;RPP=3.44459;RPPR=122.545;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=6.73282;DPRA=0.0;ODDS=131.95;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=5;MEANALT=27.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.707:61:24:861:3:44:-67.4391,-96.0061,-441.532:3:7:44:.:.:1:.:.:.:-0.0104896	./1:131.707:173:60:2163:2:16:-84.6785,-153.816,-900.018:2:2:114:.:.:1:.:.:.:-0.216332
chr19	14222209	.	C	CA	1455.37	REJECT	NS=2;DP=234;DPB=341.042;AC=2;AN=2;AF=0.0;RO=84;AO=20;PRO=51.2167;PAO=49.8833;QR=3024;QA=574;PQR=1732.15;PQA=1687.48;SRF=42;SRR=42;SAF=8;SAR=12;SRP=3.0103;SAP=4.74748;AB=0.0854701;ABP=352.265;RUN=1;RPP=38.1882;RPPR=122.545;RPL=1.0;RPR=19.0;EPP=3.44459;EPPR=6.73282;DPRA=0.0;ODDS=131.95;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=5;MEANALT=27.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.611;FS=10.594;MLEAC=1;MLEAF=0.5;MQ=58.11;MQRankSum=-0.861;QD=0.76;RPA=14,15;RU=A;ReadPosRankSum=-0.734;SOR=0.173;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.707:61:24:861:3:111:-67.4391,-64.7645,-134.975:3:7:44:.:.:.:.:1:.:.:.:-0.0104896	./1:115.3535:202:60:2163:17:463:-84.6785,-67.0412,-360.835:26:17:146:143,35:213,0,2435:.:1:1:.:.:.:-0.216332
chr19	14222209	.	CA	C	1455.37	REJECT	NS=2;DP=234;DPB=341.042;AC=2;AN=2;AF=0.0;RO=84;AO=21;PRO=51.2167;PAO=42.3;QR=3024;QA=714;PQR=1732.15;PQA=1438.4;SRF=42;SRR=42;SAF=16;SAR=5;SRP=3.0103;SAP=15.5221;AB=0.0897436;ABP=345.101;RUN=1;RPP=40.3389;RPPR=122.545;RPL=1.0;RPR=20.0;EPP=20.4855;EPPR=6.73282;DPRA=0.0;ODDS=131.95;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=5;MEANALT=27.0;LEN=1;MQM=60.9524;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.707:61:24:861:6:202:-67.4391,-62.1846,-212.415:6:14:44:.:.:1:.:.:.:-0.0104896	./1:131.707:173:60:2163:15:512:-84.6785,-83.5592,-499.148:15:13:114:.:.:1:.:.:.:-0.216332
chr19	14222229	.	T	G	1455.37	REJECT	NS=2;DP=234;DPB=341.042;AC=2;AN=2;AF=0.0;RO=84;AO=19;PRO=51.2167;PAO=23.8833;QR=3024;QA=301;PQR=1732.15;PQA=708.817;SRF=42;SRR=42;SAF=19;SAR=0;SRP=3.0103;SAP=44.2683;AB=0.0811966;ABP=359.503;RUN=1;RPP=5.8675;RPPR=122.545;RPL=7.0;RPR=12.0;EPP=5.8675;EPPR=6.73282;DPRA=0.0;ODDS=131.95;GTI=0;TYPE=snp;CIGAR=20M1X3M;NUMALT=5;MEANALT=27.0;LEN=1;MQM=57.8947;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.707:61:24:861:4:50:-67.4391,-96.1998,-495.316:4:9:44:.:.:1:.:.:.:-0.0104896	./1:131.707:173:60:2163:15:251:-84.6785,-176.264,-1406.34:15:13:114:.:.:1:.:.:.:-0.216332
chr19	14222229	.	TGGT	GGGG	1455.37	REJECT	NS=2;DP=234;DPB=341.042;AC=2;AN=4;AF=0.5;RO=84;AO=9;PRO=51.2167;PAO=19.2833;QR=3024;QA=42;PQR=1732.15;PQA=608.017;SRF=42;SRR=42;SAF=9;SAR=0;SRP=3.0103;SAP=22.5536;AB=0.0384615;ABP=435.968;RUN=1;RPP=5.18177;RPPR=122.545;RPL=6.0;RPR=3.0;EPP=5.18177;EPPR=6.73282;DPRA=0.0;ODDS=131.95;GTI=0;TYPE=complex;CIGAR=20M1X2M1X;NUMALT=5;MEANALT=27.0;LEN=24;MQM=59.8889;MQMR=60.0;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:131.707:61:24:861:4:8:-67.4391,0.0,-439.402:4:9:44:.:.:1:.:.:.:-0.0104896	0/1:131.707:173:60:2163:5:34:-84.6785,0.0,-1389.95:5:4:114:.:.:1:.:.:.:-0.216332
chr19	14222509	.	C	T	2736.07	PASS	SOMATIC;NS=2;DP=427;DPB=427.0;AC=1;AN=3;AF=0.25;RO=319;AO=108;PRO=0.0;PAO=0.0;QR=12168;QA=4053;PQR=0.0;PQA=0.0;SRF=181;SRR=138;SAF=56;SAR=52;SRP=15.5967;SAP=3.332;AB=0.345161;ABP=67.5661;RUN=1;RPP=3.0103;RPPR=4.97756;RPL=54.0;RPR=54.0;EPP=5.9056;EPPR=6.61127;DPRA=0.0;ODDS=70.5486;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996865;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.968;Dels=0.0;FS=7.32;HaplotypeScore=6.7902;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.361;QD=11.66;ReadPosRankSum=-1.285;SOR=0.417	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:116:116:4379:1:16:0.0,-30.2483,-392.667:1:1:116:115,1:.:0.008621:0:.:.:.:0:.:.:0:-0.0104896	0/1:129.501:310:203:7789:107:4037:-279.184,0.0,-616.637:107:35:310:202,105:38.0:0.339:2:3642,0,7758:.:1:1:.:.:1:-0.216332
chr19	14227724	.	T	C	15729.349999999999	REJECT	NS=2;DP=420;DPB=482.0;AC=4;AN=4;AF=1.0;RO=0;AO=482;PRO=0.0;PAO=0.0;QR=0;QA=18126;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=218;SAR=264;SRP=0.0;SAP=12.5432;AB=0.0;ABP=0.0;RUN=1;RPP=16.1473;RPPR=0.0;RPL=214.0;RPR=268.0;EPP=3.89331;EPPR=0.0;DPRA=0.0;ODDS=78.4185;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989627;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.762;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.49;SOR=0.904	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.9535:117:0:0:119:4344:-390.918,-32.1817,0.0:117:100:117:0,115:4594,343,0:1:.:1:.:.:.:-0.0104896	1/1:127.9535:361:0:0:363:13782:-1239.54,-98.2583,0.0:361:100:361:0,359:15249,1063,0:.:1:1:.:.:.:-0.216332
chr19	14227830	.	T	G	257.972	REJECT	NS=2;DP=380;DPB=396.25;AC=2;AN=2;AF=0.0;RO=298;AO=29;PRO=14.0;PAO=6.0;QR=9644;QA=443;PQR=383.5;PQA=119.0;SRF=228;SRR=70;SAF=1;SAR=28;SRP=184.918;SAP=57.5966;AB=0.0791367;ABP=430.712;RUN=1;RPP=3.08518;RPPR=11.4339;RPL=14.0;RPR=15.0;EPP=3.68421;EPPR=7.93619;DPRA=0.0;ODDS=18.4414;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=3;MEANALT=5.5;LEN=1;MQM=59.2069;MQMR=59.906;PAIRED=0.965517;PAIREDR=0.996644;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.983:102:78:2541:7:110:0.0,-15.7976,-247.211:7:7:101:.:.:1:.:.:.:-0.0104896	./1:80.0899:278:220:7103:22:333:-34.4471,-75.4174,-711.383:22:8:274:.:.:1:.:.:.:-0.216332
chr19	14227830	.	TGGA	GGGG	257.972	REJECT	NS=2;DP=380;DPB=396.25;AC=2;AN=2;AF=0.0;RO=298;AO=21;PRO=14.0;PAO=2.0;QR=9644;QA=293;PQR=383.5;PQA=42.5;SRF=228;SRR=70;SAF=0;SAR=21;SRP=184.918;SAP=48.6112;AB=0.0539568;ABP=483.421;RUN=1;RPP=5.59539;RPPR=11.4339;RPL=8.0;RPR=13.0;EPP=5.59539;EPPR=7.93619;DPRA=0.0;ODDS=18.4414;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=3;MEANALT=5.5;LEN=4;MQM=59.0476;MQMR=59.906;PAIRED=1.0;PAIREDR=0.996644;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.983:102:78:2541:6:84:0.0,-18.411,-255.877:6:6:101:.:.:1:.:.:.:-0.0104896	./1:80.0899:278:220:7103:15:209:-34.4471,-8.19253,-674.513:15:5:274:.:.:1:.:.:.:-0.216332
chr19	14227833	.	A	G	257.972	REJECT	NS=2;DP=380;DPB=396.25;AC=2;AN=3;AF=0.25;RO=298;AO=27;PRO=14.0;PAO=10.0;QR=9644;QA=381;PQR=383.5;PQA=307.0;SRF=228;SRR=70;SAF=0;SAR=27;SRP=184.918;SAP=61.6401;AB=0.0611511;ABP=468.049;RUN=1;RPP=6.95112;RPPR=11.4339;RPL=10.0;RPR=17.0;EPP=6.95112;EPPR=7.93619;DPRA=0.0;ODDS=18.4414;GTI=0;TYPE=snp;CIGAR=3M1X;NUMALT=3;MEANALT=5.5;LEN=1;MQM=59.3333;MQMR=59.906;PAIRED=1.0;PAIREDR=0.996644;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.983:102:78:2541:10:141:0.0,-11.6534,-222.888:10:10:101:.:.:1:.:.:.:-0.0104896	0/1:80.0899:278:220:7103:17:240:-34.4471,0.0,-604.814:17:6:274:.:.:1:.:.:.:-0.216332
chr19	14627050	.	G	A	14412.15	REJECT	NS=2;DP=386;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=439;PRO=0.0;PAO=0.0;QR=0;QA=16606;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=221;SAR=218;SRP=0.0;SAP=3.05482;AB=0.0;ABP=0.0;RUN=1;RPP=3.01525;RPPR=0.0;RPL=220.0;RPR=219.0;EPP=4.79595;EPPR=0.0;DPRA=0.0;ODDS=72.3212;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997722;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7673;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.725;SOR=0.7995	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:109:4131:-371.82,-29.5336,0.0:109:100:109:0,109:4547,327,0:1:.:1:.:.:.:-0.0104896	1/1:129.501:331:0:0:330:12475:-1121.97,-89.2899,0.0:330:100:330:0,330:13959,972,0:.:1:1:.:.:.:-0.216332
chr19	14627093	.	T	C	3699.77	PASS	SOMATIC;NS=2;DP=452;DPB=452.0;AC=1;AN=3;AF=0.25;RO=315;AO=137;PRO=0.0;PAO=0.0;QR=11847;QA=5229;PQR=0.0;PQA=0.0;SRF=177;SRR=138;SAF=77;SAR=60;SRP=13.4954;SAP=7.591;AB=0.395954;ABP=35.5447;RUN=1;RPP=10.0002;RPPR=6.65699;RPL=79.0;RPR=58.0;EPP=4.92817;EPPR=3.34808;DPRA=3.26415;ODDS=67.0824;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993651;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.804;Dels=0.0;FS=0.849;HaplotypeScore=5.9323;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.216;QD=13.95;ReadPosRankSum=-1.462;SOR=0.779	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:103:106:3983:0:0:0.0,-28.7076,-358.495:0:0:103:101,0:.:0.0:0:.:.:.:0:.:.:0:-0.0104896	0/1:129.501:344:209:7864:137:5229:-376.696,0.0,-613.632:137:40:344:201,130:38.0:0.386:2:4828,0,7580:.:1:1:.:.:1:-0.216332
chr19	14628242	.	G	A	3260.19	PASS	SOMATIC;NS=2;DP=493;DPB=493.0;AC=1;AN=3;AF=0.25;RO=363;AO=129;PRO=0.0;PAO=0.0;QR=12085;QA=4807;PQR=0.0;PQA=0.0;SRF=153;SRR=210;SAF=52;SAR=77;SRP=22.4459;SAP=13.531;AB=0.354396;ABP=70.0396;RUN=1;RPP=19.1869;RPPR=44.2204;RPL=80.0;RPR=49.0;EPP=11.915;EPPR=17.3731;DPRA=2.82171;ODDS=80.3905;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9767;MQMR=60.0826;PAIRED=0.992248;PAIREDR=0.991736;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=4.365;Dels=0.0;FS=0.0;HaplotypeScore=76.3845;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.345;QD=11.87;ReadPosRankSum=-0.678;SOR=0.714	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.078:127:128:4303:0:0:0.0,-34.4872,-387.126:0:0:126:125,0:.:0.0:0:.:.:.:0:.:.:0:-0.0104896	0/1:118.039:363:235:7782:129:4807:-334.916,0.0,-601.541:128:35:363:222,122:37.0:0.359:2:4337,0,7208:.:1:1:.:.:1:-0.216332
chr19	14628247	.	G	GA	447.579	REJECT	NS=2;DP=347;DPB=500.077;AC=2;AN=4;AF=0.5;RO=258;AO=42;PRO=139.667;PAO=85.6667;QR=9557;QA=1306;PQR=4970.17;PQA=2982.17;SRF=123;SRR=135;SAF=17;SAR=25;SRP=4.22228;SAP=6.31921;AB=0.121037;ABP=435.859;RUN=1;RPP=3.21711;RPPR=10.5852;RPL=22.0;RPR=20.0;EPP=16.2459;EPPR=25.7687;DPRA=0.0;ODDS=28.3184;GTI=0;TYPE=ins;CIGAR=1M1I25M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992248;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.194;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.025;QD=0.79;ReadPosRankSum=-1.427;SOR=0.577;ClippingRankSum=0.283	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:109.8845:96:65:2387:9:272:-13.1417,0.0,-231.887:12:13:92:87,16:134,0,1969:1:.:1:.:.:.:-0.0104896	0/1:160.002:258:193:7170:33:1034:-38.3234,0.0,-740.873:33:14:235:.:.:.:.:1:.:.:.:-0.216332
chr19	14628247	.	GA	G	447.579	REJECT	NS=2;DP=347;DPB=500.077;AC=2;AN=2;AF=0.0;RO=258;AO=16;PRO=139.667;PAO=72.6667;QR=9557;QA=527;PQR=4970.17;PQA=2549.67;SRF=123;SRR=135;SAF=10;SAR=6;SRP=4.22228;SAP=5.18177;AB=0.0461095;ABP=623.945;RUN=1;RPP=11.6962;RPPR=10.5852;RPL=12.0;RPR=4.0;EPP=5.18177;EPPR=25.7687;DPRA=0.0;ODDS=28.3184;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=2;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.992248;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.769:89:65:2387:7:255:-13.1417,-10.979,-250.131:7:9:81:.:.:1:.:.:.:-0.0104896	./1:160.002:258:193:7170:9:272:-38.3234,-78.2718,-879.473:9:4:235:.:.:1:.:.:.:-0.216332
chr19	14628524	.	C	T	4845.835	REJECT	NS=2;DP=218;DPB=246.0;AC=3;AN=4;AF=0.75;RO=73;AO=173;PRO=0.0;PAO=0.0;QR=2786;QA=6548;PQR=0.0;PQA=0.0;SRF=19;SRR=54;SAF=56;SAR=117;SRP=39.4494;SAP=49.7158;AB=0.617801;ABP=26.0325;RUN=1;RPP=8.54567;RPPR=24.6953;RPL=97.0;RPR=76.0;EPP=5.13156;EPPR=21.6017;DPRA=0.0;ODDS=35.284;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99422;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.241;Dels=0.0;FS=1.447;HaplotypeScore=2.9034;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-1.453;QD=27.025;ReadPosRankSum=-0.147;SOR=0.9835	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.9655:55:0:0:55:2053:-184.947,-14.8977,0.0:55:100:55:0,55:2273,165,0:1:.:1:.:.:.:-0.0104896	0/1:121.9515:191:73:2786:118:4495:-352.678,0.0,-198.916:118:62:191:73,118:4454,0,2550:.:1:1:.:.:.:-0.216332
chr19	14629138	.	C	T	868.037	PASS	SOMATIC;NS=2;DP=193;DPB=193.0;AC=1;AN=3;AF=0.25;RO=155;AO=38;PRO=0.0;PAO=0.0;QR=6048;QA=1458;PQR=0.0;PQA=0.0;SRF=31;SRR=124;SAF=8;SAR=30;SRP=124.178;SAP=30.668;AB=0.281481;ABP=59.0021;RUN=1;RPP=5.06748;RPPR=8.06773;RPL=22.0;RPR=16.0;EPP=5.06748;EPPR=4.70545;DPRA=2.32759;ODDS=37.2247;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9613;PAIRED=0.973684;PAIREDR=0.993548;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.487;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.095;QD=8.92;ReadPosRankSum=0.022;SOR=0.736	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:134.739:57:58:2255:0:0:0.0,-15.7405,-203.146:0:0:57:56,0:.:0.0:0:.:.:.:0:.:.:0:-0.0104896	0/1:120.965:135:97:3793:38:1458:-94.6125,0.0,-304.707:38:28:135:95,37:38.0:0.277:2:1233,0,3849:.:1:1:.:.:1:-0.216332
chr19	14629150	.	G	A	3826.0550000000003	REJECT	NS=2;DP=150;DPB=177.0;AC=3;AN=4;AF=0.75;RO=33;AO=143;PRO=0.0;PAO=0.0;QR=1246;QA=5401;PQR=0.0;PQA=0.0;SRF=5;SRR=28;SAF=22;SAR=121;SRP=37.8197;SAP=151.84;AB=0.725806;ABP=57.9275;RUN=1;RPP=8.49213;RPPR=6.23461;RPL=81.0;RPR=62.0;EPP=4.24029;EPPR=3.0761;DPRA=0.0;ODDS=34.0806;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.958;MQMR=60.0;PAIRED=0.993007;PAIREDR=0.969697;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.008;Dels=0.0;FS=0.0;HaplotypeScore=2.9238;MLEAC=1;MLEAF=0.75;MQ=59.975;MQRankSum=0.1;QD=28.58;ReadPosRankSum=-0.928;SOR=2.0065	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.9155:52:0:0:53:2018:-181.825,-14.375,0.0:52:100:52:0,52:2187,156,0:1:.:1:.:.:.:-0.0104896	0/1:122.2085:124:33:1246:90:3383:-271.126,0.0,-78.8299:90:73:123:33,90:3374,0,1027:.:1:1:.:.:.:-0.216332
chr19	15354015	.	T	G	24.4314	REJECT	NS=1;DP=68;DPB=68.0;AC=1;AN=4;AF=0.5;RO=43;AO=22;PRO=0.0;PAO=0.0;QR=1171;QA=466;PQR=0.0;PQA=0.0;SRF=38;SRR=5;SAF=0;SAR=22;SRP=58.0041;SAP=50.7827;AB=0.323529;ABP=21.4039;RUN=1;RPP=50.7827;RPPR=11.5447;RPL=0.0;RPR=22.0;EPP=50.7827;EPPR=3.46479;DPRA=0.0;ODDS=5.62193;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=3.0;LEN=1;MQM=58.6364;MQMR=59.8605;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:24.4314:68:43:1171:22:466:-24.3096,0.0,-88.106:22:34:65:.:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.48839
chr19	15411453	.	C	CA	112.897	REJECT	NS=1;DP=42;DPB=63.0833;AC=1;AN=3;AF=0.0;RO=26;AO=5;PRO=21.1667;PAO=8.16667;QR=914;QA=166;PQR=728.833;PQA=299.833;SRF=8;SRR=18;SAF=0;SAR=5;SRP=11.3621;SAP=13.8677;AB=0.119048;ABP=55.9529;RUN=1;RPP=6.91895;RPPR=43.4331;RPL=4.0;RPR=1.0;EPP=6.91895;EPPR=6.01695;DPRA=0.0;ODDS=4.0606;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:17.7092:42:26:914:5:166:-15.1725,-0.536254,-121.204:5:14:37:.:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.48839
chr19	15411453	.	CA	C	112.897	REJECT	NS=1;DP=42;DPB=63.0833;AC=1;AN=4;AF=0.5;RO=26;AO=6;PRO=21.1667;PAO=7.66667;QR=914;QA=194;PQR=728.833;PQA=270.333;SRF=8;SRR=18;SAF=2;SAR=4;SRP=11.3621;SAP=4.45795;AB=0.142857;ABP=49.5419;RUN=1;RPP=4.45795;RPPR=43.4331;RPL=4.0;RPR=2.0;EPP=4.45795;EPPR=6.01695;DPRA=0.0;ODDS=4.0606;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.961538;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:17.7092:42:26:914:6:194:-15.1725,0.0,-125.817:6:16:37:.:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.48839
chr19	17941294	.	T	C	2698.51	REJECT	NS=2;DP=223;DPB=250.0;AC=2;AN=4;AF=0.5;RO=146;AO=104;PRO=0.0;PAO=0.0;QR=5324;QA=3877;PQR=0.0;PQA=0.0;SRF=108;SRR=38;SAF=72;SAR=32;SRP=75.8885;SAP=36.4176;AB=0.416;ABP=18.3322;RUN=1;RPP=30.0702;RPPR=24.4871;RPL=34.0;RPR=70.0;EPP=3.34437;EPPR=3.54573;DPRA=0.0;ODDS=120.464;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986301;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.232;Dels=0.0;FS=2.9145;HaplotypeScore=4.9232;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.43;QD=13.65;ReadPosRankSum=0.509;SOR=0.386;ClippingRankSum=0.504	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.3495:52:31:1159:21:752:-53.6579,0.0,-90.3564:21:40:52:31,21:676,0,1151:1:.:1:.:.:.:-0.0104896	0/1:122.3495:197:115:4165:83:3125:-227.979,0.0,-321.104:83:42:197:113,83:2936,0,3955:.:1:1:.:.:.:-0.48839
chr19	17951178	.	G	A	1141.31	REJECT	NS=2;DP=241;DPB=274.0;AC=2;AN=4;AF=0.5;RO=215;AO=59;PRO=0.0;PAO=0.0;QR=8249;QA=2238;PQR=0.0;PQA=0.0;SRF=83;SRR=132;SAF=23;SAR=36;SRP=27.2601;SAP=9.23028;AB=0.215328;ABP=195.875;RUN=1;RPP=43.0905;RPPR=181.667;RPL=46.0;RPR=13.0;EPP=3.0471;EPPR=4.23238;DPRA=0.0;ODDS=63.9927;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.421;Dels=0.0;FS=0.868;HaplotypeScore=9.7948;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.05;QD=10.0;ReadPosRankSum=-0.5695;SOR=0.558;ClippingRankSum=-0.12	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:63:32:1234:33:1263:-96.1304,0.0,-93.5151:32:51:63:30,32:1139,0,1135:1:.:1:.:.:.:-0.0104896	0/1:129.501:208:183:7015:26:975:-31.1,0.0,-574.469:26:12:208:182,26:461,0,7190:.:1:1:.:.:.:-0.48839
chr19	17952185	.	G	T	520.4435	REJECT	NS=2;DP=140;DPB=160.0;AC=2;AN=4;AF=0.5;RO=126;AO=34;PRO=0.0;PAO=0.0;QR=4776;QA=1231;PQR=0.0;PQA=0.0;SRF=80;SRR=46;SAF=27;SAR=7;SRP=22.9327;SAP=28.557;AB=0.2125;ABP=117.881;RUN=1;RPP=19.3602;RPPR=25.3454;RPL=9.0;RPR=25.0;EPP=15.5282;EPPR=5.49198;DPRA=0.0;ODDS=48.5348;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.970588;PAIREDR=0.992063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.019;Dels=0.0;FS=4.5495;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.605;QD=7.47;ReadPosRankSum=-1.0965;SOR=1.4045;ClippingRankSum=-1.523	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:38:22:827:17:597:-43.2603,0.0,-64.011:16:43:38:22,16:498,0,733:1:.:1:.:.:.:-0.0104896	0/1:129.501:121:104:3949:17:634:-24.2893,0.0,-322.628:17:14:121:104,17:341,0,4052:.:1:1:.:.:.:-0.48839
chr19	17955021	.	G	A	900.41	REJECT	NS=1;DP=78;DPB=78.0;AC=1;AN=4;AF=0.5;RO=43;AO=35;PRO=0.0;PAO=0.0;QR=1619;QA=1316;PQR=0.0;PQA=0.0;SRF=26;SRR=17;SAF=23;SAR=12;SRP=7.10075;SAP=10.5174;AB=0.448718;ABP=4.79202;RUN=1;RPP=20.9405;RPPR=17.6046;RPL=9.0;RPR=26.0;EPP=4.56135;EPPR=4.27278;DPRA=0.0;ODDS=207.327;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.976744;technology.ILLUMINA=1.0;BaseQRankSum=-1.238;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.162;QD=13.81;ReadPosRankSum=1.468;SOR=0.96;ClippingRankSum=0.715	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:43:1619:35:1316:-97.3672,0.0,-124.643:33:44:76:42,32:1050,0,1561:1:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.48839
chr19	18273013	.	G	A	2789.67	PASS	SOMATIC;NS=2;DP=390;DPB=390.0;AC=1;AN=3;AF=0.25;RO=284;AO=106;PRO=0.0;PAO=0.0;QR=10624;QA=4023;PQR=0.0;PQA=0.0;SRF=170;SRR=114;SAF=61;SAR=45;SRP=26.9882;SAP=8.25461;AB=0.377224;ABP=39.8017;RUN=1;RPP=4.32138;RPPR=12.9196;RPL=49.0;RPR=57.0;EPP=16.8586;EPPR=7.41441;DPRA=2.57798;ODDS=68.9228;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.981132;PAIREDR=0.996479;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.411;Dels=0.0;FS=1.505;HaplotypeScore=5.835;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.189;QD=12.85;ReadPosRankSum=-0.826;SOR=0.59	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:106:109:4078:0:0:0.0,-29.5068,-367.026:0:0:106:104,0:.:0.0:0:.:.:.:0:.:.:0:-0.0104896	0/1:129.501:280:175:6546:106:4023:-286.215,0.0,-512.734:105:38:280:167,100:37.0:0.376:2:3627,0,6459:.:1:1:.:.:1:-0.48839
chr19	18273047	.	T	C	12912.0	REJECT	NS=2;DP=351;DPB=401.0;AC=4;AN=4;AF=1.0;RO=0;AO=401;PRO=0.0;PAO=0.0;QR=0;QA=14972;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=228;SAR=173;SRP=0.0;SAP=19.3911;AB=0.0;ABP=0.0;RUN=1;RPP=3.01572;RPPR=0.0;RPL=200.0;RPR=201.0;EPP=3.01572;EPPR=0.0;DPRA=0.0;ODDS=65.3946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8803;MQMR=0.0;PAIRED=0.987531;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.0;MQ=59.95;QD=29.59;SOR=1.0005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.0875:96:0:0:98:3686:-331.771,-26.5255,0.0:96:100:96:0,95:3885,284,0:1:.:1:.:.:.:-0.0104896	1/1:126.0875:302:0:0:303:11286:-1014.59,-81.8599,0.0:302:100:302:0,301:12447,867,0:.:1:1:.:.:.:-0.48839
chr19	18276856	.	T	C	8431.52	REJECT	NS=2;DP=226;DPB=259.0;AC=4;AN=4;AF=1.0;RO=0;AO=259;PRO=0.0;PAO=0.0;QR=0;QA=9898;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=164;SAR=95;SRP=0.0;SAP=42.9268;AB=0.0;ABP=0.0;RUN=1;RPP=199.273;RPPR=0.0;RPL=53.0;RPR=206.0;EPP=3.08576;EPPR=0.0;DPRA=0.0;ODDS=44.9245;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9132;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.095;SOR=1.3125	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:64:0:0:65:2512:-226.253,-17.6354,0.0:64:100:64:0,64:2628,193,0:1:.:1:.:.:.:-0.0104896	1/1:129.501:194:0:0:194:7386:-664.494,-52.5483,0.0:194:100:194:0,194:8272,578,0:.:1:1:.:.:.:-0.48839
chr19	18279638	.	T	C	13440.5	REJECT	NS=2;DP=359;DPB=415.0;AC=4;AN=4;AF=1.0;RO=0;AO=415;PRO=0.0;PAO=0.0;QR=0;QA=15744;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=153;SAR=262;SRP=0.0;SAP=65.1772;AB=0.0;ABP=0.0;RUN=1;RPP=23.7779;RPPR=0.0;RPL=239.0;RPR=176.0;EPP=4.1876;EPPR=0.0;DPRA=0.0;ODDS=72.6896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992771;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8126;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.69;SOR=1.3095	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:110:0:0:111:4193:-377.002,-29.6936,0.0:110:100:110:0,110:4406,330,0:1:.:1:.:.:.:-0.0104896	1/1:129.501:304:0:0:304:11551:-1038.92,-82.2745,0.0:304:100:304:0,304:12877,894,0:.:1:1:.:.:.:-0.48839
chr19	21008943	.	G	T	1054.48	REJECT	NS=1;DP=88;DPB=88.0;AC=1;AN=4;AF=0.5;RO=49;AO=39;PRO=0.0;PAO=0.0;QR=1855;QA=1520;PQR=0.0;PQA=0.0;SRF=34;SRR=15;SAF=27;SAR=12;SRP=19.0083;SAP=15.538;AB=0.443182;ABP=5.47788;RUN=1;RPP=9.74743;RPPR=22.5536;RPL=14.0;RPR=25.0;EPP=12.42;EPPR=3.40914;DPRA=0.0;ODDS=242.803;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.115;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.394;QD=15.82;ReadPosRankSum=0.713;SOR=0.707;ClippingRankSum=-3.324	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:49:1855:39:1520:-112.988,0.0,-143.143:39:44:87:48,39:1405,0,1732:1:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.48839
chr19	21008970	.	C	G	1594.93	REJECT	NS=1;DP=121;DPB=121.0;AC=1;AN=4;AF=0.5;RO=63;AO=58;PRO=0.0;PAO=0.0;QR=2456;QA=2219;PQR=0.0;PQA=0.0;SRF=38;SRR=25;SAF=36;SAR=22;SRP=8.83536;SAP=10.3484;AB=0.479339;ABP=3.45895;RUN=1;RPP=17.986;RPPR=3.872;RPL=19.0;RPR=39.0;EPP=5.40641;EPPR=12.9715;DPRA=0.0;ODDS=367.246;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.691;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.008;QD=15.91;ReadPosRankSum=-0.727;SOR=0.794;ClippingRankSum=-1.042	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:120:63:2456:58:2219:-166.904,0.0,-188.242:58:48:120:62,58:1938,0,2236:1:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.48839
chr19	21009030	.	C	T	1597.12	REJECT	NS=1;DP=118;DPB=118.0;AC=1;AN=4;AF=0.5;RO=61;AO=57;PRO=0.0;PAO=0.0;QR=2322;QA=2195;PQR=0.0;PQA=0.0;SRF=27;SRR=34;SAF=21;SAR=36;SRP=4.7546;SAP=11.5819;AB=0.483051;ABP=3.30474;RUN=1;RPP=3.35316;RPPR=13.2981;RPL=30.0;RPR=27.0;EPP=3.35316;EPPR=5.89373;DPRA=0.0;ODDS=367.749;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.858;FS=3.405;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.485;QD=17.23;ReadPosRankSum=-1.061;SOR=1.033;ClippingRankSum=0.404	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.8795:118:61:2322:57:2195:-165.565,0.0,-177.008:57:48:118:61,57:2061,0,2241:1:.:1:.:.:.:-0.0104896	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.48839
chr19	24007173	.	AGTT	A	8563.82	REJECT	NS=2;DP=255;DPB=215.091;AC=4;AN=4;AF=1.0;RO=0;AO=264;PRO=25.0;PAO=26.0;QR=0;QA=9698;PQR=899.0;PQA=934.0;SRF=0;SRR=0;SAF=72;SAR=192;SRP=0.0;SAP=121.454;AB=0.0;ABP=0.0;RUN=1;RPP=16.1707;RPPR=0.0;RPL=152.0;RPR=112.0;EPP=21.9613;EPPR=0.0;DPRA=0.0;ODDS=37.3693;GTI=0;TYPE=del;CIGAR=1M3D7M;NUMALT=1;MEANALT=2.5;LEN=3;MQM=60.0758;MQMR=0.0;PAIRED=0.973485;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=24007176;HOMLEN=5;HOMSEQ=GTTGT;SVLEN=-3;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.065;QD=28.405;RPA=2,1;RU=GTT;SOR=2.066;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.4335:55:0:0:53:1933:-174.094,-14.3542,0.0:58:100:58:1,59:2611,175,0:1:.:1:1:.:.:-0.0104896	1/1:119.003:228:0:0:211:7765:-701.67,-57.3497,0.0:211:100:211:4,214:12115,635,0:.:1:1:1:.:.:-0.48839
chr19	30303508	.	C	CGGACG	413.855	REJECT	NS=2;DP=70;DPB=129.407;AC=1;AN=4;AF=0.25;RO=46;AO=21;PRO=50.5;PAO=51.5;QR=1728;QA=672;PQR=1823.0;PQA=1858.0;SRF=34;SRR=12;SAF=19;SAR=2;SRP=25.858;SAP=32.8939;AB=0.434783;ABP=4.70971;RUN=1;RPP=3.1137;RPPR=51.3492;RPL=11.0;RPR=10.0;EPP=3.1137;EPPR=15.095;DPRA=0.0;ODDS=9.19736;GTI=0;TYPE=ins;CIGAR=1M5I26M;NUMALT=1;MEANALT=2.5;LEN=5;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.956522;technology.ILLUMINA=1.0;END=30303508;HOMLEN=27;HOMSEQ=GGACGGGACGGGACGGGACGGGACGGG;SVLEN=5;SVTYPE=INS;BaseQRankSum=-1.661;FS=3.161;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.294;QD=15.66;ReadPosRankSum=0.523;SOR=1.48;ClippingRankSum=0.909	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:49:23:868:20:637:-48.5932,0.0,-66.2764:28:54:52:27,39:1149,0,1334:1:.:1:1:.:.:0.000209978	0/0:39.9441:24:23:860:1:35:0.0,-3.35321,-74.2832:1:4:24:.:.:.:.:0:.:.:.:-0.0183251
chr19	31503180	.	C	T	2079.15	REJECT	NS=2;DP=318;DPB=363.0;AC=2;AN=4;AF=0.5;RO=262;AO=101;PRO=0.0;PAO=0.0;QR=10088;QA=3852;PQR=0.0;PQA=0.0;SRF=96;SRR=166;SAF=39;SAR=62;SRP=43.6218;SAP=14.3837;AB=0.278237;ABP=158.07;RUN=1;RPP=18.6836;RPPR=39.1131;RPL=64.0;RPR=37.0;EPP=4.06379;EPPR=27.1783;DPRA=0.0;ODDS=231.236;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.676;Dels=0.0;FS=1.595;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.426;QD=12.695;ReadPosRankSum=0.976;SOR=0.5;ClippingRankSum=0.264	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:38:1430:51:1889:-145.936,0.0,-104.651:51:58:87:35,51:1788,0,1246:1:.:1:.:.:.:0.000209978	0/1:129.501:274:224:8658:50:1963:-102.332,0.0,-704.553:50:18:274:224,50:1380,0,8885:.:1:1:.:.:.:-0.0183251
chr19	31770009	.	C	T	5840.49	REJECT	NS=2;DP=327;DPB=376.0;AC=2;AN=4;AF=0.5;RO=170;AO=206;PRO=0.0;PAO=0.0;QR=6484;QA=7871;PQR=0.0;PQA=0.0;SRF=74;SRR=96;SAF=95;SAR=111;SRP=9.19261;SAP=5.70883;AB=0.547872;ABP=10.4949;RUN=1;RPP=3.38978;RPPR=4.28764;RPL=106.0;RPR=100.0;EPP=3.17896;EPPR=3.47014;DPRA=0.0;ODDS=297.827;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990291;PAIREDR=0.994118;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3445;Dels=0.0;FS=0.8515;HaplotypeScore=7.8429;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.018;QD=19.15;ReadPosRankSum=-0.623;SOR=0.58;ClippingRankSum=-1.311	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.071:97:46:1743:52:2019:-155.178,0.0,-130.333:51:53:97:46,51:1779,0,1610:1:.:1:.:.:.:0.000209978	0/1:120.071:278:124:4741:154:5852:-451.133,0.0,-351.157:154:55:278:124,154:5710,0,4438:.:1:1:.:.:.:-0.0183251
chr19	33792631	.	C	A	1110.55	REJECT	NS=1;DP=84;DPB=84.0;AC=1;AN=4;AF=0.5;RO=41;AO=43;PRO=0.0;PAO=0.0;QR=1544;QA=1558;PQR=0.0;PQA=0.0;SRF=15;SRR=26;SAF=13;SAR=30;SRP=9.41879;SAP=17.6046;AB=0.511905;ABP=3.1137;RUN=1;RPP=3.0608;RPPR=3.48696;RPL=22.0;RPR=21.0;EPP=5.48477;EPPR=3.06326;DPRA=0.0;ODDS=255.315;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=1.238;FS=1.961;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=2.148;QD=17.32;ReadPosRankSum=0.775;SOR=1.013;ClippingRankSum=0.431	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:83:41:1544:43:1558:-117.519,0.0,-116.288:42:51:83:40,42:1466,0,1433:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-27.9211
chr19	36211499	.	T	C	149.071	REJECT	NS=2;DP=323;DPB=338.8;AC=2;AN=2;AF=0.0;RO=264;AO=16;PRO=11.0;PAO=11.5;QR=9379;QA=245;PQR=277.0;PQA=210.0;SRF=19;SRR=245;SAF=15;SAR=1;SRP=423.124;SAP=29.6108;AB=0.0495356;ABP=572.306;RUN=1;RPP=22.5536;RPPR=4.19474;RPL=14.0;RPR=2.0;EPP=29.6108;EPPR=3.0432;DPRA=0.0;ODDS=1.66453;GTI=1;TYPE=snp;CIGAR=1X4M;NUMALT=3;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=59.9886;PAIRED=1.0;PAIREDR=0.977273;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:99.7677:91:76:2611:5:71:-19.7843,-29.1818,-247.487:5:5:91:.:.:1:.:.:.:0.000209978	./1:0.681041:232:188:6768:11:174:-9.27828,-43.7264,-630.371:11:5:226:.:.:1:.:.:.:-0.143127
chr19	36211499	.	TCCCA	CCCCC	149.071	REJECT	NS=2;DP=323;DPB=338.8;AC=2;AN=4;AF=0.5;RO=264;AO=19;PRO=11.0;PAO=4.5;QR=9379;QA=378;PQR=277.0;PQA=52.0;SRF=19;SRR=245;SAF=19;SAR=0;SRP=423.124;SAP=44.2683;AB=0.0588235;ABP=549.072;RUN=1;RPP=28.7251;RPPR=4.19474;RPL=17.0;RPR=2.0;EPP=28.7251;EPPR=3.0432;DPRA=0.0;ODDS=1.66453;GTI=1;TYPE=complex;CIGAR=1X3M1X;NUMALT=3;MEANALT=5.0;LEN=5;MQM=58.7368;MQMR=59.9886;PAIRED=1.0;PAIREDR=0.977273;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:99.7677:91:76:2611:5:111:-19.7843,0.0,-227.982:5:5:91:.:.:1:.:.:.:0.000209978	0/1:0.681041:232:188:6768:14:267:-9.27828,0.0,-625.021:14:6:226:.:.:1:.:.:.:-0.143127
chr19	36211503	.	A	C	149.071	REJECT	NS=2;DP=323;DPB=338.8;AC=2;AN=2;AF=0.0;RO=264;AO=18;PRO=11.0;PAO=4.0;QR=9379;QA=375;PQR=277.0;PQA=119.0;SRF=19;SRR=245;SAF=18;SAR=0;SRP=423.124;SAP=42.0968;AB=0.0557276;ABP=556.763;RUN=1;RPP=33.8935;RPPR=4.19474;RPL=17.0;RPR=1.0;EPP=33.8935;EPPR=3.0432;DPRA=0.0;ODDS=1.66453;GTI=1;TYPE=snp;CIGAR=4M1X;NUMALT=3;MEANALT=5.0;LEN=1;MQM=58.8889;MQMR=59.9886;PAIRED=1.0;PAIREDR=0.977273;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:99.7677:91:76:2611:5:81:-19.7843,-8.46394,-232.128:5:5:91:.:.:1:.:.:.:0.000209978	./1:0.681041:232:188:6768:13:294:-9.27828,-1.07774,-594.924:13:6:226:.:.:1:.:.:.:-0.143127
chr19	36212124	.	T	C	353.818	REJECT	NS=2;DP=259;DPB=273.75;AC=2;AN=2;AF=0.0;RO=207;AO=20;PRO=19.0;PAO=11.0;QR=6861;QA=321;PQR=517.5;PQA=224.0;SRF=24;SRR=183;SAF=19;SAR=1;SRP=268.213;SAP=38.1882;AB=0.0772201;ABP=405.118;RUN=1;RPP=30.8051;RPPR=4.27961;RPL=18.0;RPR=2.0;EPP=38.1882;EPPR=10.6577;DPRA=0.0;ODDS=33.3946;GTI=0;TYPE=snp;CIGAR=1X3M;NUMALT=2;MEANALT=6.0;LEN=1;MQM=55.6;MQMR=59.6184;PAIRED=1.0;PAIREDR=0.990338;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:134.888:63:45:1496:9:146:-17.3358,-19.6226,-148.539:9:15:59:.:.:1:.:.:.:0.000209978	./1:160.002:196:162:5365:11:175:-31.4325,-52.3002,-505.812:11:6:185:.:.:1:.:.:.:-0.143127
chr19	36212124	.	TCCA	CCCC	353.818	REJECT	NS=2;DP=259;DPB=273.75;AC=2;AN=4;AF=0.5;RO=207;AO=17;PRO=19.0;PAO=2.0;QR=6861;QA=250;PQR=517.5;PQA=38.5;SRF=24;SRR=183;SAF=17;SAR=0;SRP=268.213;SAP=39.9253;AB=0.0656371;ABP=427.454;RUN=1;RPP=24.5973;RPPR=4.27961;RPL=15.0;RPR=2.0;EPP=24.5973;EPPR=10.6577;DPRA=0.0;ODDS=33.3946;GTI=0;TYPE=complex;CIGAR=1X2M1X;NUMALT=2;MEANALT=6.0;LEN=4;MQM=56.8235;MQMR=59.6184;PAIRED=1.0;PAIREDR=0.990338;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:134.888:63:45:1496:5:65:-17.3358,0.0,-149.586:5:8:59:.:.:1:.:.:.:0.000209978	0/1:160.002:196:162:5365:12:185:-31.4325,0.0,-491.024:12:6:185:.:.:1:.:.:.:-0.143127
chr19	36212143	.	T	C	33.77	PASS	SOMATIC;DP=219;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-5.024;Dels=0.0;FS=114.524;HaplotypeScore=24.9733;MLEAC=1;MLEAF=0.5;MQ=58.93;MQRankSum=-2.708;QD=0.15;ReadPosRankSum=-0.837;SOR=6.802	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:0.000209978	0/1:186,32:219:62.0:62,0,6156:32:15:218:.:1:.:.:.:.:-0.143127
chr19	36214632	.	A	AG	12611.1	REJECT	NS=2;DP=347;DPB=528.333;AC=4;AN=4;AF=1.0;RO=0;AO=384;PRO=10.5;PAO=12.5;QR=0;QA=14070;PQR=321.5;PQA=358.5;SRF=0;SRR=0;SAF=171;SAR=213;SRP=0.0;SAP=12.9855;AB=0.0;ABP=0.0;RUN=1;RPP=14.976;RPPR=0.0;RPL=215.0;RPR=169.0;EPP=13.9581;EPPR=0.0;DPRA=0.0;ODDS=61.1563;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0521;MQMR=0.0;PAIRED=0.992188;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=36214632;HOMLEN=1;HOMSEQ=G;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.16;QD=31.7;RPA=1,2;RU=G;SOR=0.974;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.9445:92:0:0:92:3296:-296.375,-24.6848,0.0:92:100:92:30,132:3432,277,0:1:.:1:1:.:.:0.000209978	1/1:122.9445:301:0:0:292:10774:-972.193,-79.2162,0.0:300:100:300:86,368:12704,903,0:.:1:1:1:.:.:-0.143127
chr19	36221051	.	G	A	1976.17	REJECT	NS=2;DP=383;DPB=436.0;AC=2;AN=4;AF=0.5;RO=343;AO=93;PRO=0.0;PAO=0.0;QR=13075;QA=3599;PQR=0.0;PQA=0.0;SRF=180;SRR=163;SAF=46;SAR=47;SRP=4.83991;SAP=3.03365;AB=0.213303;ABP=314.288;RUN=1;RPP=28.4375;RPPR=125.328;RPL=63.0;RPR=30.0;EPP=3.59403;EPPR=3.06728;DPRA=0.0;ODDS=67.5028;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978495;PAIREDR=0.997085;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.455;Dels=0.0;FS=2.4415;HaplotypeScore=8.7447;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3075;QD=10.76;ReadPosRankSum=0.151;SOR=0.6925;ClippingRankSum=0.209	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.0055:104:46:1786:59:2262:-175.132,0.0,-132.299:58:55:104:46,57:2088,0,1686:1:.:1:.:.:.:0.000209978	0/1:118.0055:331:297:11289:34:1337:-30.6661,0.0,-925.712:34:10:331:297,34:530,0,11554:.:1:1:.:.:.:-0.143127
chr19	36224705	.	A	G	14515.9	REJECT	NS=2;DP=390;DPB=442.0;AC=4;AN=4;AF=1.0;RO=1;AO=441;PRO=0.0;PAO=0.0;QR=16;QA=16638;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=228;SAR=213;SRP=5.18177;SAP=4.11819;AB=0.0;ABP=0.0;RUN=1;RPP=3.05462;RPPR=5.18177;RPL=222.0;RPR=219.0;EPP=5.61508;EPPR=5.18177;DPRA=0.0;ODDS=67.9149;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988662;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.609;Dels=0.0;FS=0.0;HaplotypeScore=6.7768;MLEAC=2;MLEAF=1.0;MQ=59.9;MQRankSum=-1.221;QD=30.68;ReadPosRankSum=-1.395;SOR=0.572	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3859:-347.337,-27.62,0.0:101:100:101:0,100:4053,300,0:1:.:1:.:.:.:0.000209978	1/1:129.501:339:1:16:339:12779:-1147.9,-90.5573,0.0:338:100:339:1,338:14145,984,0:.:1:1:.:.:.:-0.143127
chr19	37513703	.	A	T	3534.75	REJECT	NS=1;DP=107;DPB=107.0;AC=2;AN=4;AF=1.0;RO=0;AO=107;PRO=0.0;PAO=0.0;QR=0;QA=3985;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=62;SAR=45;SRP=0.0;SAP=8.8753;AB=0.0;ABP=0.0;RUN=1;RPP=3.03059;RPPR=0.0;RPL=53.0;RPR=54.0;EPP=15.6941;EPPR=0.0;DPRA=0.0;ODDS=71.3106;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.990654;PAIREDR=0.0;technology.ILLUMINA=1.0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.95;SOR=1.051	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:107:3985:-358.67,-28.9698,0.0:104:100:104:0,102:4125,305,0:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.143127
chr19	40636400	.	T	G	5244.61	REJECT	NS=2;DP=390;DPB=438.0;AC=2;AN=4;AF=0.5;RO=249;AO=189;PRO=0.0;PAO=0.0;QR=9644;QA=7245;PQR=0.0;PQA=0.0;SRF=121;SRR=128;SAF=83;SAR=106;SRP=3.43762;SAP=9.08812;AB=0.431507;ABP=20.858;RUN=1;RPP=3.57327;RPPR=6.85616;RPL=91.0;RPR=98.0;EPP=22.3238;EPPR=11.391;DPRA=0.0;ODDS=210.805;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994709;PAIREDR=0.983936;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3745;Dels=0.0;FS=2.8865;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.096;QD=14.16;ReadPosRankSum=1.451;SOR=0.6375;ClippingRankSum=-1.856	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:60:2334:34:1298:-91.3628,0.0,-184.619:34:36:93:58,34:1136,0,2180:1:.:1:.:.:.:0.000209978	0/1:129.501:343:189:7310:155:5947:-441.708,0.0,-564.293:155:45:343:187,155:5639,0,7098:.:1:1:.:.:.:-0.143127
chr19	40637615	.	T	C	2608.27	PASS	SOMATIC;NS=2;DP=432;DPB=432.0;AC=1;AN=3;AF=0.25;RO=327;AO=105;PRO=0.0;PAO=0.0;QR=12552;QA=3941;PQR=0.0;PQA=0.0;SRF=137;SRR=190;SAF=36;SAR=69;SRP=21.6637;SAP=25.5316;AB=0.33123;ABP=81.4368;RUN=1;RPP=3.03098;RPPR=12.1013;RPL=52.0;RPR=53.0;EPP=6.50534;EPPR=18.9544;DPRA=2.75652;ODDS=72.7478;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990476;PAIREDR=0.990826;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-2.426;Dels=0.0;FS=7.45;HaplotypeScore=13.5888;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.115;QD=10.94;ReadPosRankSum=-0.035;SOR=1.096	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:111:115:4412:0:0:0.0,-31.168,-397.084:0:0:111:107,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:129.501:316:212:8140:105:3941:-268.648,0.0,-646.31:105:33:316:202,97:37.0:0.314:2:3484,0,8109:.:1:1:.:.:1:-0.143127
chr19	40638641	.	A	G	2649.4	PASS	SOMATIC;NS=2;DP=467;DPB=467.0;AC=1;AN=3;AF=0.25;RO=356;AO=110;PRO=0.0;PAO=0.0;QR=13244;QA=4004;PQR=0.0;PQA=0.0;SRF=168;SRR=188;SAF=46;SAR=64;SRP=5.45016;SAP=9.40627;AB=0.335366;ABP=80.23;RUN=1;RPP=4.98437;RPPR=3.22989;RPL=60.0;RPR=50.0;EPP=6.87947;EPPR=18.2594;DPRA=2.35971;ODDS=86.8844;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9831;PAIRED=0.990909;PAIREDR=0.980337;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.666;Dels=0.0;FS=1.453;HaplotypeScore=21.3842;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.178;QD=10.45;ReadPosRankSum=0.333;SOR=0.889	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:144.152:134:138:5040:0:0:0.0,-37.3074,-453.478:0:0:133:128,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:121.576:325:218:8204:110:4004:-271.392,0.0,-649.163:109:34:325:206,104:36.0:0.338:2:3423,0,8045:.:1:1:.:.:1:-0.143127
chr19	40742320	.	T	C	2988.475	REJECT	NS=2;DP=192;DPB=222.0;AC=2;AN=4;AF=0.5;RO=111;AO=111;PRO=0.0;PAO=0.0;QR=4282;QA=4230;PQR=0.0;PQA=0.0;SRF=32;SRR=79;SAF=24;SAR=87;SRP=46.2246;SAP=80.6551;AB=0.5;ABP=3.0103;RUN=1;RPP=35.8954;RPPR=62.1878;RPL=76.0;RPR=35.0;EPP=11.6375;EPPR=3.96888;DPRA=0.0;ODDS=187.517;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.005;Dels=0.0;FS=3.7095;HaplotypeScore=3.9562;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.57;QD=18.245;ReadPosRankSum=0.892;SOR=1.2195;ClippingRankSum=1.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:58:29:1122:30:1130:-85.7892,0.0,-85.081:30:51:58:28,30:1094,0,1007:1:.:1:.:.:.:0.000209978	0/1:129.501:163:82:3160:81:3100:-234.754,0.0,-240.17:81:50:163:82,81:2980,0,3064:.:1:1:.:.:.:-0.143127
chr19	40750323	.	T	TA	76.2235	REJECT	NS=1;DP=70;DPB=100.826;AC=1;AN=4;AF=0.5;RO=53;AO=8;PRO=31.5;PAO=29.5;QR=1992;QA=260;PQR=1048.5;PQA=970.5;SRF=31;SRR=22;SAF=6;SAR=2;SRP=6.32897;SAP=7.35324;AB=0.114286;ABP=93.4676;RUN=1;RPP=4.09604;RPPR=59.0998;RPL=3.0;RPR=5.0;EPP=4.09604;EPPR=3.05127;DPRA=0.0;ODDS=17.5511;GTI=0;TYPE=ins;CIGAR=1M1I22M;NUMALT=1;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.875;PAIREDR=0.981132;technology.ILLUMINA=1.0;BaseQRankSum=0.522;FS=7.046;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-1.239;QD=1.21;ReadPosRankSum=0.418;SOR=1.824;ClippingRankSum=0.382	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:87.61175:71:53:1992:8:260:-11.9035,0.0,-174.848:10:14:67:61,12:134,0,1432:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.143127
chr19	40761212	.	G	A	2041.03	PASS	SOMATIC;NS=2;DP=284;DPB=284.0;AC=1;AN=3;AF=0.25;RO=207;AO=77;PRO=0.0;PAO=0.0;QR=7888;QA=2974;PQR=0.0;PQA=0.0;SRF=67;SRR=140;SAF=24;SAR=53;SRP=58.9126;SAP=26.7273;AB=0.392857;ABP=22.5536;RUN=1;RPP=30.1114;RPPR=68.4797;RPL=54.0;RPR=23.0;EPP=5.29458;EPPR=3.10471;DPRA=2.22727;ODDS=55.9112;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995169;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.333;Dels=0.0;FS=0.0;HaplotypeScore=3.8907;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.766;QD=14.07;ReadPosRankSum=0.508;SOR=0.72	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:138.759:87:88:3386:0:0:0.0,-23.856,-304.829:0:0:87:86,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:118.8795:196:119:4502:77:2974:-214.481,0.0,-351.93:77:39:196:115,76:38.0:0.404:2:2785,0,4410:.:1:1:.:.:1:-0.143127
chr19	40886223	.	G	A	1867.44	REJECT	NS=2;DP=375;DPB=428.0;AC=2;AN=4;AF=0.5;RO=334;AO=94;PRO=0.0;PAO=0.0;QR=12665;QA=3550;PQR=0.0;PQA=0.0;SRF=162;SRR=172;SAF=36;SAR=58;SRP=3.66044;SAP=14.1911;AB=0.219626;ABP=295.246;RUN=1;RPP=3.84193;RPPR=11.4361;RPL=50.0;RPR=44.0;EPP=10.4949;EPPR=13.4126;DPRA=0.0;ODDS=120.09;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997006;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0835;Dels=0.0;FS=1.3515;HaplotypeScore=6.837;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.231;QD=9.67;ReadPosRankSum=0.6285;SOR=0.9025;ClippingRankSum=-0.998	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:104:52:1993:53:2000:-151.562,0.0,-150.947:52:50:104:52,52:1799,0,1816:1:.:1:.:.:.:0.000209978	0/1:129.501:323:282:10672:41:1550:-52.3516,0.0,-872.438:41:13:323:282,41:774,0,10958:.:1:1:.:.:.:-0.143127
chr19	40886993	.	C	T	2995.46	PASS	SOMATIC;NS=2;DP=415;DPB=415.0;AC=1;AN=3;AF=0.25;RO=301;AO=114;PRO=0.0;PAO=0.0;QR=11534;QA=4319;PQR=0.0;PQA=0.0;SRF=143;SRR=158;SAF=50;SAR=64;SRP=4.63349;SAP=6.74371;AB=0.372549;ABP=46.1843;RUN=1;RPP=6.74371;RPPR=17.619;RPL=50.0;RPR=64.0;EPP=3.69603;EPPR=28.1229;DPRA=2.80734;ODDS=68.9774;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.38;Dels=0.0;FS=3.999;HaplotypeScore=4.8601;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.59;QD=12.45;ReadPosRankSum=-0.134;SOR=0.946	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:106:109:4158:0:0:0.0,-29.5306,-374.231:0:0:106:104,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:129.501:305:192:7376:114:4319:-305.613,0.0,-580.591:113:37:305:186,109:37.0:0.371:2:3827,0,7340:.:1:1:.:.:1:-0.143127
chr19	40890938	.	T	C	6212.185	REJECT	NS=2;DP=337;DPB=382.0;AC=2;AN=4;AF=0.5;RO=169;AO=213;PRO=0.0;PAO=0.0;QR=6497;QA=8238;PQR=0.0;PQA=0.0;SRF=87;SRR=82;SAF=137;SAR=76;SRP=3.33152;SAP=40.9448;AB=0.557592;ABP=14.0155;RUN=1;RPP=6.69059;RPPR=5.90131;RPL=97.0;RPR=116.0;EPP=5.95657;EPPR=13.8163;DPRA=0.0;ODDS=258.339;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2415;Dels=0.0;FS=9.594;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.9165;QD=20.345;ReadPosRankSum=-0.239;SOR=1.043;ClippingRankSum=-0.161	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.259:87:39:1519:50:1941:-150.603,0.0,-112.611:49:56:87:38,48:1741,0,1277:1:.:1:.:.:.:0.000209978	0/1:120.259:293:130:4978:163:6297:-487.035,0.0,-368.394:163:56:293:130,163:6182,0,4684:.:1:1:.:.:.:-0.143127
chr19	40890981	.	C	A	3735.09	PASS	SOMATIC;NS=2;DP=401;DPB=401.0;AC=1;AN=3;AF=0.25;RO=266;AO=135;PRO=0.0;PAO=0.0;QR=10188;QA=5197;PQR=0.0;PQA=0.0;SRF=114;SRR=152;SAF=71;SAR=64;SRP=14.7983;SAP=3.79846;AB=0.425868;ABP=18.1421;RUN=1;RPP=4.95658;RPPR=7.71244;RPL=73.0;RPR=62.0;EPP=27.4756;EPPR=5.10014;DPRA=3.77381;ODDS=53.4394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992593;PAIREDR=0.992481;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.22;Dels=0.0;FS=11.712;HaplotypeScore=3.9131;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.379;QD=15.31;ReadPosRankSum=1.007;SOR=0.529	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.535:82:84:3251:0:0:0.0,-22.7825,-292.705:0:0:82:80,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:119.2675:315:182:6937:135:5197:-381.611,0.0,-538.09:134:43:315:176,126:38.0:0.408:2:4850,0,6731:.:1:1:.:.:1:-0.143127
chr19	41725271	.	A	G	743.21	REJECT	NS=1;DP=52;DPB=52.0;AC=1;AN=4;AF=0.5;RO=25;AO=27;PRO=0.0;PAO=0.0;QR=974;QA=1043;PQR=0.0;PQA=0.0;SRF=16;SRR=9;SAF=15;SAR=12;SRP=7.26639;SAP=3.73412;AB=0.519231;ABP=3.17734;RUN=1;RPP=9.52472;RPPR=13.5202;RPL=9.0;RPR=18.0;EPP=6.95112;EPPR=3.09716;DPRA=0.0;ODDS=156.07;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.037;FS=2.35;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.612;QD=18.98;ReadPosRankSum=1.282;SOR=0.421;ClippingRankSum=0.403	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:52:25:974:27:1043:-79.8673,0.0,-73.6494:27:52:52:25,27:1015,0,937:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.143127
chr19	41743861	.	A	G	9928.785	REJECT	NS=2;DP=268;DPB=315.0;AC=4;AN=4;AF=1.0;RO=1;AO=314;PRO=0.0;PAO=0.0;QR=16;QA=11857;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=220;SAR=94;SRP=5.18177;SAP=112.801;AB=0.0;ABP=0.0;RUN=1;RPP=18.9437;RPPR=5.18177;RPL=133.0;RPR=181.0;EPP=3.12095;EPPR=5.18177;DPRA=0.0;ODDS=61.0095;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996815;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.656;Dels=0.0;FS=0.0;HaplotypeScore=2.8799;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.351;QD=30.58;ReadPosRankSum=1.009;SOR=1.36;ClippingRankSum=0.324	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:92:1:16:92:3397:-304.333,-23.7179,0.0:91:99:92:1,90:3605,262,0:1:.:1:.:.:.:0.000209978	1/1:129.501:221:0:0:222:8460:-761.05,-60.1209,0.0:221:100:221:0,221:9392,653,0:.:1:1:.:.:.:-0.143127
chr19	41759631	.	AC	A	4007.64	REJECT	NS=2;DP=265;DPB=275.556;AC=2;AN=2;AF=0.0;RO=52;AO=45;PRO=27.6667;PAO=20.6667;QR=1804;QA=1271;PQR=950.5;PQA=718.5;SRF=24;SRR=28;SAF=15;SAR=30;SRP=3.67845;SAP=13.8677;AB=0.169811;ABP=253.959;RUN=1;RPP=28.5372;RPPR=13.7006;RPL=34.0;RPR=11.0;EPP=3.05855;EPPR=5.68288;DPRA=0.0;ODDS=30.1987;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977778;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:128.378:67:10:331:13:336:-101.466,-78.211,-110.771:13:22:58:.:.:1:.:.:.:0.000209978	./1:160.002:198:42:1473:32:935:-312.318,-241.386,-372.023:32:19:167:.:.:1:.:.:.:-0.143127
chr19	41759631	.	ACCC	A	3092.7299999999996	PASS	DP=171;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=4.5645;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.376;QD=18.37;RPA=12,9;RU=C;ReadPosRankSum=0.071;SOR=0.9065;STR;ClippingRankSum=-2.086	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:38,38:76:99.0:1476,0,1167:38:50:76:1:.:.:.:.:.:0.000209978	0/1:110,108:259:99.0:4691,0,2915:108:50:218:.:1:.:.:.:.:-0.143127
chr19	41759634	.	CCCC	T	4007.64	REJECT	NS=2;DP=265;DPB=275.556;AC=2;AN=4;AF=0.5;RO=52;AO=128;PRO=27.6667;PAO=30.6667;QR=1804;QA=4449;PQR=950.5;PQA=1147.0;SRF=24;SRR=28;SAF=50;SAR=78;SRP=3.67845;SAP=16.3106;AB=0.483019;ABP=3.67403;RUN=1;RPP=60.0793;RPPR=13.7006;RPL=93.0;RPR=35.0;EPP=3.62103;EPPR=5.68288;DPRA=0.0;ODDS=30.1987;GTI=0;TYPE=complex;CIGAR=1M3D2M1X11M;NUMALT=2;MEANALT=13.0;LEN=15;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.378:67:10:331:35:1215:-101.466,0.0,-79.4271:35:60:58:.:.:1:.:.:.:0.000209978	0/1:160.002:198:42:1473:93:3234:-312.318,0.0,-188.307:93:56:167:.:.:1:.:.:.:-0.143127
chr19	41759637	.	C	T	2307.77	PASS	DP=159;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=0.5545;Dels=0.0;FS=2.7215;HaplotypeScore=101.468;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4055;QD=16.06;ReadPosRankSum=1.154;SOR=0.888;ClippingRankSum=0.355	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:37,38:75:99.0:1474,0,1590:38:51:75:1:.:.:.:.:.:0.000209978	0/1:149,93:242:99.0:3198,0,5477:93:38:242:.:1:.:.:.:.:-0.143127
chr19	42791994	.	T	C	6200.825000000001	REJECT	NS=2;DP=444;DPB=504.0;AC=2;AN=4;AF=0.5;RO=266;AO=237;PRO=0.0;PAO=0.0;QR=9998;QA=8950;PQR=0.0;PQA=0.0;SRF=98;SRR=168;SAF=88;SAR=149;SRP=43.0111;SAP=37.1033;AB=0.470238;ABP=6.88793;RUN=1;RPP=5.65821;RPPR=3.82664;RPL=127.0;RPR=110.0;EPP=11.8153;EPPR=3.30418;DPRA=0.0;ODDS=308.144;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991561;PAIREDR=0.992481;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.4375;Dels=0.0;FS=3.586;HaplotypeScore=12.7445;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4765;QD=18.02;ReadPosRankSum=0.713;SOR=0.587;ClippingRankSum=-0.489	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:118:49:1859:70:2658:-206.963,0.0,-135.088:69:58:118:49,68:2471,0,1652:1:.:1:.:.:.:0.000209978	0/1:129.501:384:217:8139:167:6292:-461.96,0.0,-628.097:167:43:383:216,167:5848,0,7891:.:1:1:.:.:.:-0.143127
chr19	42793590	.	G	A	5221.84	REJECT	NS=2;DP=331;DPB=376.0;AC=2;AN=4;AF=0.5;RO=189;AO=186;PRO=0.0;PAO=0.0;QR=7300;QA=7119;PQR=0.0;PQA=0.0;SRF=75;SRR=114;SAF=80;SAR=106;SRP=20.4855;SAP=10.9023;AB=0.494681;ABP=3.1027;RUN=1;RPP=97.5744;RPPR=98.153;RPL=138.0;RPR=48.0;EPP=4.17776;EPPR=17.0847;DPRA=0.0;ODDS=244.777;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983871;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0465;Dels=0.0;FS=1.4625;HaplotypeScore=3.866;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0345;QD=17.145;ReadPosRankSum=0.0895;SOR=0.5525;ClippingRankSum=0.094	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.7885:85:48:1870:39:1467:-108.489,0.0,-144.772:38:45:85:46,38:1333,0,1644:1:.:1:.:.:.:0.000209978	0/1:123.7885:288:141:5430:147:5652:-430.407,0.0,-410.389:146:51:287:141,145:5412,0,5189:.:1:1:.:.:.:-0.143127
chr19	45814860	.	G	T	11711.6	REJECT	NS=2;DP=433;DPB=501.0;AC=2;AN=4;AF=0.5;RO=121;AO=380;PRO=0.0;PAO=0.0;QR=4597;QA=14615;PQR=0.0;PQA=0.0;SRF=59;SRR=62;SAF=190;SAR=190;SRP=3.17181;SAP=3.0103;AB=0.758483;ABP=293.758;RUN=1;RPP=5.77607;RPPR=3.45895;RPL=179.0;RPR=201.0;EPP=13.0905;EPPR=9.48883;DPRA=0.0;ODDS=191.687;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992105;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.271;Dels=0.0;FS=3.2105;HaplotypeScore=6.8322;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.0385;QD=25.36;ReadPosRankSum=-0.271;SOR=0.485;ClippingRankSum=0.335	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:133:67:2554:67:2574:-195.311,0.0,-193.532:66:50:133:67,66:2279,0,2391:1:.:1:.:.:.:0.000209978	0/1:129.501:366:54:2043:313:12041:-983.599,0.0,-84.3433:312:85:366:54,311:12367,0,1173:.:1:1:.:.:.:-0.143127
chr19	45814908	.	C	T	17100.199999999997	REJECT	NS=2;DP=454;DPB=520.0;AC=4;AN=4;AF=1.0;RO=0;AO=520;PRO=0.0;PAO=0.0;QR=0;QA=19769;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=259;SAR=261;SRP=0.0;SAP=3.027;AB=0.0;ABP=0.0;RUN=1;RPP=3.07711;RPPR=0.0;RPL=258.0;RPR=262.0;EPP=17.0581;EPPR=0.0;DPRA=0.0;ODDS=86.6399;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.998077;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9304;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.935;SOR=0.7085	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:130:0:0:132:4992:-449.22,-35.7522,0.0:130:100:130:0,128:5259,384,0:1:.:1:.:.:.:0.000209978	1/1:129.501:388:0:0:388:14777:-1329.02,-105.042,0.0:388:100:388:0,388:16504,1147,0:.:1:1:.:.:.:-0.143127
chr19	45815248	.	T	C	13327.349999999999	REJECT	NS=2;DP=357;DPB=406.0;AC=4;AN=4;AF=1.0;RO=1;AO=405;PRO=0.0;PAO=0.0;QR=39;QA=15297;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=193;SAR=212;SRP=5.18177;SAP=4.94586;AB=0.0;ABP=0.0;RUN=1;RPP=4.21667;RPPR=5.18177;RPL=210.0;RPR=195.0;EPP=39.9468;EPPR=5.18177;DPRA=0.0;ODDS=64.7692;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997531;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.185;Dels=0.0;FS=1.5195;HaplotypeScore=5.8265;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.869;QD=29.885;ReadPosRankSum=1.497;SOR=0.654	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:97:3608:-324.766,-26.2538,0.0:96:100:96:0,96:3734,288,0:1:.:1:.:.:.:0.000209978	1/1:129.501:309:1:39:308:11689:-1047.85,-80.1317,0.0:308:100:309:1,308:13030,871,0:.:1:1:.:.:.:-0.143127
chr19	45818527	.	G	A	2102.865	REJECT	NS=2;DP=373;DPB=428.0;AC=2;AN=4;AF=0.5;RO=318;AO=109;PRO=0.0;PAO=0.0;QR=11911;QA=4161;PQR=0.0;PQA=0.0;SRF=126;SRR=192;SAF=50;SAR=59;SRP=32.7554;SAP=4.62396;AB=0.254673;ABP=226.753;RUN=1;RPP=3.03022;RPPR=3.69315;RPL=55.0;RPR=54.0;EPP=3.98647;EPPR=12.8707;DPRA=0.0;ODDS=270.312;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.651;Dels=0.0;FS=3.4655;HaplotypeScore=5.9233;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.334;QD=10.41;ReadPosRankSum=-1.242;SOR=0.4535;ClippingRankSum=1.299	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.292:107:59:2191:49:1889:-140.765,0.0,-167.954:49:45:107:57,49:1701,0,1913:1:.:1:.:.:.:0.000209978	0/1:117.292:319:259:9720:60:2272:-118.445,0.0,-787.893:60:19:319:259,60:1636,0,9859:.:1:1:.:.:.:-0.143127
chr19	45818581	.	G	A	1723.445	REJECT	NS=2;DP=256;DPB=292.0;AC=2;AN=4;AF=0.5;RO=207;AO=84;PRO=0.0;PAO=0.0;QR=8001;QA=3171;PQR=0.0;PQA=0.0;SRF=54;SRR=153;SAF=23;SAR=61;SRP=105.825;SAP=40.3389;AB=0.287671;ABP=117.355;RUN=1;RPP=17.9004;RPPR=52.9542;RPL=54.0;RPR=30.0;EPP=15.5221;EPPR=3.10471;DPRA=0.0;ODDS=180.554;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6455;Dels=0.0;FS=2.9025;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.616;QD=12.905;ReadPosRankSum=-0.495;SOR=0.7325;ClippingRankSum=0.029	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:72:30:1177:42:1599:-124.464,0.0,-86.4662:42:58:72:30,42:1530,0,1063:1:.:1:.:.:.:0.000209978	0/1:129.501:220:177:6824:42:1572:-82.0986,0.0,-554.935:42:19:219:177,42:1118,0,6959:.:1:1:.:.:.:-0.143127
chr19	45854919	.	T	G	1826.16	REJECT	NS=1;DP=124;DPB=124.0;AC=1;AN=4;AF=0.5;RO=59;AO=65;PRO=0.0;PAO=0.0;QR=2133;QA=2464;PQR=0.0;PQA=0.0;SRF=23;SRR=36;SAF=32;SAR=33;SRP=9.23028;SAP=3.04371;AB=0.524194;ABP=3.64073;RUN=1;RPP=8.65613;RPPR=11.2913;RPL=39.0;RPR=26.0;EPP=3.04371;EPPR=9.23028;DPRA=0.0;ODDS=348.562;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=3.801;FS=5.599;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.428;QD=19.28;ReadPosRankSum=2.417;SOR=0.362;ClippingRankSum=0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:123:59:2133:65:2464:-188.2,0.0,-158.39:64:52:123:58,64:2381,0,1757:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.143127
chr19	45855524	.	G	A	3232.8	PASS	SOMATIC;NS=2;DP=410;DPB=410.0;AC=1;AN=3;AF=0.25;RO=289;AO=120;PRO=0.0;PAO=0.0;QR=10925;QA=4639;PQR=0.0;PQA=0.0;SRF=169;SRR=120;SAF=73;SAR=47;SRP=21.0508;SAP=15.2429;AB=0.380952;ABP=41.7866;RUN=1;RPP=3.66174;RPPR=13.2966;RPL=63.0;RPR=57.0;EPP=26.4622;EPPR=3.19814;DPRA=3.31579;ODDS=60.1812;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99308;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.137;Dels=0.0;FS=2.545;HaplotypeScore=4.9324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.325;QD=13.52;ReadPosRankSum=0.631;SOR=0.845	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:93:95:3521:0:0:0.0,-25.7104,-316.93:0:0:93:92,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:129.501:313:194:7404:120:4639:-332.22,0.0,-580.91:120:38:312:189,114:38.0:0.367:2:4261,0,7280:.:1:1:.:.:1:-0.143127
chr19	45865002	.	C	A	5507.12	REJECT	NS=2;DP=347;DPB=392.0;AC=2;AN=4;AF=0.5;RO=199;AO=192;PRO=0.0;PAO=0.0;QR=7615;QA=7372;PQR=0.0;PQA=0.0;SRF=86;SRR=113;SAF=93;SAR=99;SRP=10.9651;SAP=3.41745;AB=0.489796;ABP=3.36483;RUN=1;RPP=5.22701;RPPR=3.2831;RPL=89.0;RPR=103.0;EPP=5.9056;EPPR=3.02121;DPRA=0.0;ODDS=242.283;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989583;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.464;Dels=0.0;FS=2.4405;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0245;QD=16.38;ReadPosRankSum=1.676;SOR=0.5135;ClippingRankSum=-0.063	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.1265:88:50:1893:38:1443:-106.066,0.0,-146.568:38:43:88:50,38:1280,0,1735:1:.:1:.:.:.:0.000209978	0/1:125.1265:302:149:5722:154:5929:-451.218,0.0,-432.615:153:51:302:149,153:5677,0,5512:.:1:1:.:.:.:-0.143127
chr19	45868309	.	T	G	5323.780000000001	REJECT	NS=2;DP=347;DPB=401.0;AC=2;AN=4;AF=0.5;RO=199;AO=202;PRO=0.0;PAO=0.0;QR=7579;QA=7698;PQR=0.0;PQA=0.0;SRF=92;SRR=107;SAF=105;SAR=97;SRP=5.46548;SAP=3.69829;AB=0.503741;ABP=3.05904;RUN=1;RPP=27.778;RPPR=12.1872;RPL=77.0;RPR=125.0;EPP=10.2772;EPPR=7.82246;DPRA=0.0;ODDS=248.231;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.697;Dels=0.0;FS=5.053;HaplotypeScore=2.9657;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.423;QD=19.455;ReadPosRankSum=1.5635;SOR=0.535;ClippingRankSum=0.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:42:1532:66:2498:-195.581,0.0,-108.665:65:62:106:39,65:2335,0,1254:1:.:1:.:.:.:0.000209978	0/1:129.501:293:157:6047:136:5200:-388.334,0.0,-464.964:136:46:293:157,136:4930,0,5923:.:1:1:.:.:.:-0.143127
chr19	45922323	.	G	T	932.941	REJECT	NS=2;DP=216;DPB=247.0;AC=2;AN=4;AF=0.5;RO=196;AO=51;PRO=0.0;PAO=0.0;QR=7445;QA=1912;PQR=0.0;PQA=0.0;SRF=123;SRR=73;SAF=34;SAR=17;SRP=30.7077;SAP=15.3153;AB=0.206478;ABP=187.849;RUN=1;RPP=55.1682;RPPR=152.089;RPL=8.0;RPR=43.0;EPP=3.05288;EPPR=3.40914;DPRA=0.0;ODDS=26.3882;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6085;Dels=0.0;FS=0.0;HaplotypeScore=6.8234;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.144;QD=9.18;ReadPosRankSum=0.378;SOR=0.7635;ClippingRankSum=-1.321	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:61:29:1124:32:1191:-90.7416,0.0,-84.708:32:52:61:29,32:1075,0,1028:1:.:1:.:.:.:0.000209978	0/1:106.792:186:167:6321:19:721:-14.5434,0.0,-518.295:19:10:186:167,19:252,0,6464:.:1:1:.:.:.:-0.143127
chr19	45923653	.	A	G	5727.64	REJECT	NS=2;DP=403;DPB=462.0;AC=2;AN=4;AF=0.5;RO=246;AO=215;PRO=0.0;PAO=0.0;QR=9278;QA=8184;PQR=0.0;PQA=0.0;SRF=103;SRR=143;SAF=99;SAR=116;SRP=17.1337;SAP=5.92916;AB=0.465368;ABP=7.82326;RUN=1;RPP=4.23238;RPPR=5.27004;RPL=113.0;RPR=102.0;EPP=10.3731;EPPR=4.74042;DPRA=0.0;ODDS=370.626;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990698;PAIREDR=0.995935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.034;Dels=0.0;FS=4.7855;HaplotypeScore=9.8502;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1585;QD=16.595;ReadPosRankSum=0.072;SOR=0.448;ClippingRankSum=0.34	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:116:57:2155:60:2321:-177.196,0.0,-162.238:60:51:116:56,60:2070,0,1902:1:.:1:.:.:.:0.000209978	0/1:129.501:344:189:7123:155:5863:-434.198,0.0,-547.966:154:45:343:189,154:5442,0,6911:.:1:1:.:.:.:-0.143127
chr19	46021514	.	C	T	15312.9	REJECT	NS=2;DP=396;DPB=452.0;AC=4;AN=4;AF=1.0;RO=0;AO=452;PRO=0.0;PAO=0.0;QR=0;QA=17596;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=206;SAR=246;SRP=0.0;SAP=10.6969;AB=0.0;ABP=0.0;RUN=1;RPP=35.3134;RPPR=0.0;RPL=267.0;RPR=185.0;EPP=21.4774;EPPR=0.0;DPRA=0.0;ODDS=72.9482;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997788;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.12;SOR=0.8975	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.642:107:0:0:110:4240:-381.601,-29.806,0.0:107:100:107:0,105:4267,315,0:1:.:1:.:.:.:0.000209978	1/1:124.642:341:0:0:342:13356:-1201.24,-92.6556,0.0:341:100:341:0,341:14927,1023,0:.:1:1:.:.:.:-0.143127
chr19	49588420	.	T	G	2905.24	PASS	SOMATIC;NS=2;DP=363;DPB=363.0;AC=1;AN=3;AF=0.25;RO=254;AO=109;PRO=0.0;PAO=0.0;QR=9499;QA=4177;PQR=0.0;PQA=0.0;SRF=109;SRR=145;SAF=38;SAR=71;SRP=14.0899;SAP=24.7051;AB=0.392086;ABP=31.1301;RUN=1;RPP=8.76769;RPPR=47.3289;RPL=63.0;RPR=46.0;EPP=22.1551;EPPR=21.1002;DPRA=3.27059;ODDS=53.9091;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.265;Dels=0.0;FS=9.777;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.306;QD=13.74;ReadPosRankSum=1.387;SOR=1.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:84:85:3072:0:0:0.0,-22.9865,-276.556:0:0:84:84,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:129.501:278:169:6427:109:4177:-300.431,0.0,-502.839:109:39:278:161,104:38.0:0.395:2:3848,0,6366:.:1:1:.:.:1:-0.143127
chr19	50140068	.	C	T	12787.2	REJECT	NS=2;DP=345;DPB=391.0;AC=4;AN=4;AF=1.0;RO=0;AO=391;PRO=0.0;PAO=0.0;QR=0;QA=14667;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=144;SAR=247;SRP=0.0;SAP=61.9288;AB=0.0;ABP=0.0;RUN=1;RPP=3.06028;RPPR=0.0;RPL=194.0;RPR=197.0;EPP=3.94886;EPPR=0.0;DPRA=0.0;ODDS=61.7081;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997442;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.8367;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.075;SOR=1.4035	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.3435:91:0:0:92:3448:-310.402,-24.9244,0.0:91:100:91:0,91:3840,273,0:1:.:1:.:.:.:0.000209978	1/1:123.3435:299:0:0:299:11219:-1009.08,-80.912,0.0:299:100:299:0,299:12510,876,0:.:1:1:.:.:.:-0.143127
chr19	50140092	.	G	A	12785.599999999999	REJECT	NS=2;DP=342;DPB=389.0;AC=4;AN=4;AF=1.0;RO=0;AO=389;PRO=0.0;PAO=0.0;QR=0;QA=14601;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=144;SAR=245;SRP=0.0;SAP=59.9542;AB=0.0;ABP=0.0;RUN=1;RPP=3.01588;RPPR=0.0;RPL=194.0;RPR=195.0;EPP=5.02547;EPPR=0.0;DPRA=0.0;ODDS=62.3014;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997429;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8989;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.76;SOR=1.367	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.8885:92:0:0:93:3437:-309.409,-25.1821,0.0:92:100:92:0,91:3735,273,0:1:.:1:.:.:.:0.000209978	1/1:123.8885:296:0:0:296:11164:-1004.16,-80.1206,0.0:296:100:296:0,296:12565,879,0:.:1:1:.:.:.:-0.143127
chr19	50919797	.	C	T	1287.94	REJECT	NS=1;DP=94;DPB=94.0;AC=1;AN=4;AF=0.5;RO=47;AO=47;PRO=0.0;PAO=0.0;QR=1740;QA=1772;PQR=0.0;PQA=0.0;SRF=22;SRR=25;SAF=28;SAR=19;SRP=3.42611;SAP=6.75262;AB=0.5;ABP=3.0103;RUN=1;RPP=3.42611;RPPR=6.75262;RPL=22.0;RPR=25.0;EPP=3.42611;EPPR=3.42611;DPRA=0.0;ODDS=289.933;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978723;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.699;FS=6.784;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.003;QD=17.4;ReadPosRankSum=1.503;SOR=1.114;ClippingRankSum=-1.488	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:93:47:1740:47:1772:-134.054,0.0,-131.175:46:50:93:46,46:1629,0,1603:1:.:1:.:.:.:0.000209978	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-28.0315
chr19	52500769	.	ACT	A	6262.75	REJECT	NS=2;DP=362;DPB=313.75;AC=2;AN=4;AF=0.5;RO=193;AO=223;PRO=17.0;PAO=11.0;QR=7337;QA=8308;PQR=542.5;PQA=313.5;SRF=88;SRR=105;SAF=112;SAR=111;SRP=6.26188;SAP=3.02004;AB=0.536058;ABP=7.7082;RUN=1;RPP=3.25374;RPPR=7.97206;RPL=114.0;RPR=109.0;EPP=10.109;EPPR=3.02155;DPRA=0.0;ODDS=375.342;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=60.1794;MQMR=60.0;PAIRED=0.995516;PAIREDR=0.994819;technology.ILLUMINA=1.0;MQ0=0;END=52500771;HOMLEN=0;SVLEN=-2;SVTYPE=DEL;BaseQRankSum=0.008;FS=7.6555;MLEAC=1;MLEAF=0.5;MQ=60.095;MQRankSum=-0.362;QD=22.805;ReadPosRankSum=0.785;SOR=0.791;ClippingRankSum=0.827	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:57:2119:64:2411:-183.654,0.0,-163.782:67:54:121:48,71:2614,0,2505:1:.:1:1:.:.:0.000209978	0/1:129.501:301:136:5218:159:5897:-449.474,0.0,-402.617:159:54:295:116,167:7884,0,6651:.:1:1:1:.:.:-0.147664
chr19	52693297	.	C	CT	.	PASS	SOMATIC;AC=1;AN=4	GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:36,0:36:0.166667,0.0:60.0,0.0:37.9371,0.0:0.00285714,0.0:0,0:0,0:29,7,0,0:0:0:36:.:.:.:.:0:.:0.000209978	0/1:62,29:91:0.0967742,0.172414:60.0,61.3793:38.5118,37.0394:0.0,0.0:73,11:26,11:55,7,22,7:29:32:91:.:.:.:.:1:.:-0.147664
chr19	52694426	.	C	T	4092.5	PASS	SOMATIC;NS=2;DP=521;DPB=521.0;AC=1;AN=3;AF=0.25;RO=367;AO=153;PRO=0.0;PAO=0.0;QR=14057;QA=5821;PQR=0.0;PQA=0.0;SRF=225;SRR=142;SAF=93;SAR=60;SRP=43.7713;SAP=18.4661;AB=0.393316;ABP=41.466;RUN=1;RPP=14.9463;RPPR=34.541;RPL=62.0;RPR=91.0;EPP=10.5182;EPPR=16.0806;DPRA=2.94697;ODDS=82.7024;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.973856;PAIREDR=0.983651;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.175;Dels=0.0;FS=1.77;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.148;QD=13.58;ReadPosRankSum=-1.559;SOR=0.576	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:125:131:4972:0:0:0.0,-35.4912,-447.436:0:0:124:118,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:129.501:386:236:9085:153:5821:-418.188,0.0,-711.755:151:39:386:230,143:38.0:0.376:2:5271,0,8981:.:1:1:.:.:1:-0.147664
chr19	52694464	.	G	A	4724.86	PASS	SOMATIC;NS=2;DP=632;DPB=632.0;AC=1;AN=3;AF=0.25;RO=456;AO=175;PRO=0.0;PAO=0.0;QR=17546;QA=6743;PQR=0.0;PQA=0.0;SRF=234;SRR=222;SAF=82;SAR=93;SRP=3.69603;SAP=4.51172;AB=0.370763;ABP=71.4853;RUN=1;RPP=7.48974;RPPR=9.18185;RPL=78.0;RPR=97.0;EPP=5.80219;EPPR=10.6295;DPRA=2.95;ODDS=100.818;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982857;PAIREDR=0.991228;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.621;Dels=0.0;FS=3.376;HaplotypeScore=6.7941;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.858;QD=12.84;ReadPosRankSum=2.016;SOR=0.699	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.087:156:160:6200:0:0:0.0,-43.3589,-557.848:0:0:156:153,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:121.0435:468:296:11346:175:6743:-478.895,0.0,-892.839:172:37:467:279,159:38.0:0.358:2:6037,0,11274:.:1:1:.:.:1:-0.147664
chr19	54170028	.	G	A	132.887	REJECT	SOMATIC;NS=2;DP=272;DPB=272.0;AC=1;AN=4;AF=0.25;RO=238;AO=33;PRO=0.0;PAO=0.0;QR=8768;QA=1215;PQR=0.0;PQA=0.0;SRF=194;SRR=44;SAF=24;SAR=9;SRP=208.297;SAP=17.8158;AB=0.13198;ABP=234.763;RUN=1;RPP=10.9724;RPPR=11.2218;RPL=22.0;RPR=11.0;EPP=6.23461;EPPR=33.7029;DPRA=0.0;ODDS=6.41468;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=32.8182;MQMR=28.8824;PAIRED=1.0;PAIREDR=0.995798;technology.ILLUMINA=1.0;MQ0=4;BaseQRankSum=0.819;Dels=0.0;FS=0.0;HaplotypeScore=7.5272;MLEAC=1;MLEAF=0.5;MQ=31.8;MQRankSum=1.782;QD=2.08;ReadPosRankSum=-2.245;SOR=0.346	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:27.8657:75:68:2516:7:244:0.0,-1.6314,-136.946:7:9:75:.:.:.:.:0:.:.:.:0.000209978	0/1:115.434:199:170:6252:26:971:-19.6053,0.0,-317.538:28:14:198:170,30:446,0,3811:.:1:1:.:.:.:-0.147664
chr19	54170045	.	A	G	305.06	REJECT	NS=2;DP=344;DPB=344.0;AC=2;AN=4;AF=0.5;RO=234;AO=108;PRO=0.0;PAO=0.0;QR=7538;QA=2679;PQR=0.0;PQA=0.0;SRF=214;SRR=20;SAF=2;SAR=106;SRP=352.265;SAP=220.479;AB=0.313953;ABP=106.433;RUN=1;RPP=220.479;RPPR=3.93828;RPL=2.0;RPR=106.0;EPP=237.529;EPPR=6.01695;DPRA=0.0;ODDS=34.9478;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=32.3241;MQMR=29.2821;PAIRED=1.0;PAIREDR=0.995726;technology.ILLUMINA=1.0;MQ0=97;BaseQRankSum=-4.657;Dels=0.0;FS=266.108;HaplotypeScore=44.2966;MLEAC=1;MLEAF=0.5;MQ=27.64;MQRankSum=2.106;QD=2.8;ReadPosRankSum=-7.31;SOR=8.468	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:128.905:94:63:1925:31:854:-43.0084,0.0,-103.832:31:33:94:.:.:.:.:1:.:.:.:0.000209978	0/1:118.72:299:171:5613:77:1825:-79.8088,0.0,-304.166:113:37:296:195,150:1002,0,3761:.:1:1:.:.:.:-0.147664
chr19	54170104	.	C	A	2127.64	REJECT	NS=2;DP=294;DPB=294.0;AC=2;AN=4;AF=0.5;RO=180;AO=113;PRO=0.0;PAO=0.0;QR=6716;QA=4238;PQR=0.0;PQA=0.0;SRF=125;SRR=55;SAF=82;SAR=31;SRP=62.1226;SAP=52.9926;AB=0.384354;ABP=37.163;RUN=1;RPP=9.94748;RPPR=7.83579;RPL=66.0;RPR=47.0;EPP=17.0192;EPPR=33.1696;DPRA=0.0;ODDS=109.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=33.3363;MQMR=33.8389;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=97;BaseQRankSum=1.0555;Dels=0.0;FS=0.287;HaplotypeScore=6.8544;MLEAC=1;MLEAF=0.5;MQ=32.735;MQRankSum=0.535;QD=8.585;ReadPosRankSum=0.2815;SOR=0.8555;ClippingRankSum=0.023	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:66:44:1616:28:994:-50.1375,0.0,-98.031:25:38:66:38,22:613,0,1193:1:.:1:.:.:.:0.000209978	0/1:129.501:269:136:5100:85:3244:-175.531,0.0,-311.269:96:36:269:210,108:2439,0,4171:.:1:1:.:.:.:-0.147664
chr19	54170149	.	C	G	7829.67	REJECT	NS=2;DP=269;DPB=285.0;AC=4;AN=4;AF=1.0;RO=0;AO=285;PRO=0.0;PAO=0.0;QR=0;QA=10668;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=41;SRP=0.0;SAP=316.99;AB=0.0;ABP=0.0;RUN=1;RPP=4.72462;RPPR=0.0;RPL=135.0;RPR=150.0;EPP=5.21225;EPPR=0.0;DPRA=0.0;ODDS=45.9558;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=35.7825;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=38;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=35.74;QD=31.545;SOR=4.0075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.571:67:0:0:70:2579:-197.544,-18.0833,0.0:67:100:67:0,64:2524,192,0:1:.:1:.:.:.:0.000209978	1/1:120.571:234:0:0:215:8089:-624.448,-57.9471,0.0:234:100:234:0,253:8138,614,0:.:1:1:.:.:.:-0.147664
chr19	54182249	.	T	C	3175.45	PASS	SOMATIC;NS=2;DP=496;DPB=496.0;AC=1;AN=3;AF=0.25;RO=368;AO=128;PRO=0.0;PAO=0.0;QR=14097;QA=4841;PQR=0.0;PQA=0.0;SRF=229;SRR=139;SAF=76;SAR=52;SRP=50.8063;SAP=12.7819;AB=0.335958;ABP=92.0635;RUN=1;RPP=3.28173;RPPR=5.3706;RPL=66.0;RPR=62.0;EPP=5.45321;EPPR=17.7622;DPRA=3.31304;ODDS=72.6865;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=54.9453;MQMR=58.4728;PAIRED=0.992188;PAIREDR=0.991848;technology.ILLUMINA=1.0;MQ0=1;VT=SNP;BaseQRankSum=1.088;Dels=0.0;FS=2.388;HaplotypeScore=3.9214;MLEAC=1;MLEAF=0.5;MQ=57.69;MQRankSum=-1.502;QD=10.91;ReadPosRankSum=0.26;SOR=0.556	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:137.947:111:115:4359:0:0:0.0,-31.1414,-389.769:0:0:111:108,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:118.4735:381:253:9738:128:4841:-324.122,0.0,-768.471:128:34:381:243,122:37.0:0.332:2:4194,0,9765:.:1:1:.:.:1:-0.147664
chr19	54189967	.	G	A	1406.44	PASS	SOMATIC;NS=2;DP=267;DPB=267.0;AC=1;AN=3;AF=0.25;RO=205;AO=62;PRO=0.0;PAO=0.0;QR=7839;QA=2364;PQR=0.0;PQA=0.0;SRF=45;SRR=160;SAF=8;SAR=54;SRP=143.097;SAP=77.1206;AB=0.319588;ABP=57.8568;RUN=1;RPP=38.8746;RPPR=4.80044;RPL=47.0;RPR=15.0;EPP=30.4689;EPPR=3.27511;DPRA=2.65753;ODDS=46.5547;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995122;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.813;Dels=0.0;FS=2.747;HaplotypeScore=3.8786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.991;QD=10.51;ReadPosRankSum=-1.37;SOR=1.087	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.033:71:73:2800:0:0:0.0,-19.7925,-252.135:0:0:71:70,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:120.0165:194:132:5039:62:2364:-160.144,0.0,-400.778:62:32:194:131,62:38.0:0.323:2:2067,0,5034:.:1:1:.:.:1:-0.147664
chr19	54201756	.	C	G	5298.8	REJECT	NS=2;DP=358;DPB=411.0;AC=2;AN=4;AF=0.5;RO=210;AO=197;PRO=0.0;PAO=0.0;QR=7768;QA=7193;PQR=0.0;PQA=0.0;SRF=107;SRR=103;SAF=88;SAR=109;SRP=3.17575;SAP=7.87131;AB=0.479319;ABP=4.5372;RUN=1;RPP=7.87131;RPPR=5.65743;RPL=109.0;RPR=88.0;EPP=3.1095;EPPR=5.03701;DPRA=0.0;ODDS=242.471;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.7462;MQMR=60.0952;PAIRED=0.994924;PAIREDR=0.995238;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6885;Dels=0.0;FS=4.203;HaplotypeScore=29.0927;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.2795;QD=14.955;ReadPosRankSum=0.8555;SOR=0.9425;ClippingRankSum=-0.069	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:101:63:2304:41:1488:-105.782,0.0,-179.24:39:39:101:60,38:1253,0,2132:1:.:1:.:.:.:0.000209978	0/1:129.501:306:147:5464:156:5705:-431.115,0.0,-409.508:156:51:302:146,156:5396,0,5083:.:1:1:.:.:.:-0.147664
chr19	54201810	.	G	GT	1530.89	REJECT	NS=2;DP=256;DPB=331.6;AC=2;AN=3;AF=0.25;RO=91;AO=50;PRO=34.15;PAO=36.15;QR=3283;QA=1381;PQR=1174.52;PQA=1216.02;SRF=32;SRR=59;SAF=21;SAR=29;SRP=20.4059;SAP=5.78978;AB=0.195312;ABP=209.436;RUN=1;RPP=5.78978;RPPR=3.22506;RPL=21.0;RPR=29.0;EPP=11.5225;EPPR=4.94315;DPRA=0.0;ODDS=123.035;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=4;MEANALT=15.0;LEN=1;MQM=59.9;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.692;FS=4.219;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=0.295;QD=3.73;RPA=14,15;RU=T;ReadPosRankSum=0.124;SOR=0.412;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.947:65:23:826:4:82:-58.9187,-58.853,-125.951:4:7:59:.:.:.:.:1:.:.:.:0.000209978	0/1:116.4735:221:68:2457:46:1299:-102.834,0.0,-195.118:63:35:177:115,81:982,0,1619:.:1:1:.:.:.:-0.147664
chr19	54201810	.	G	GTT	1530.89	REJECT	NS=2;DP=256;DPB=331.6;AC=2;AN=2;AF=0.0;RO=91;AO=15;PRO=34.15;PAO=38.15;QR=3283;QA=436;PQR=1174.52;PQA=1211.02;SRF=32;SRR=59;SAF=6;SAR=9;SRP=20.4059;SAP=4.31318;AB=0.0585938;ABP=436.253;RUN=1;RPP=4.31318;RPPR=3.22506;RPL=9.0;RPR=6.0;EPP=10.1038;EPPR=4.94315;DPRA=0.0;ODDS=123.035;GTI=0;TYPE=ins;CIGAR=1M2I19M;NUMALT=4;MEANALT=15.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.947:65:23:826:2:75:-58.9187,-55.8854,-123.336:2:3:59:.:.:1:.:.:.:0.000209978	./1:133.947:191:68:2457:13:361:-102.834,-79.511,-283.808:13:8:158:.:.:1:.:.:.:-0.147664
chr19	54201810	.	GT	G	1530.89	REJECT	NS=2;DP=256;DPB=331.6;AC=2;AN=3;AF=0.25;RO=91;AO=52;PRO=34.15;PAO=30.15;QR=3283;QA=1636;PQR=1174.52;PQA=1036.85;SRF=32;SRR=59;SAF=25;SAR=27;SRP=20.4059;SAP=3.17734;AB=0.203125;ABP=198.986;RUN=1;RPP=4.51363;RPPR=3.22506;RPL=29.0;RPR=23.0;EPP=9.02361;EPPR=4.94315;DPRA=0.0;ODDS=123.035;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=4;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.246;FS=5.783;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=0.74;QD=6.27;ReadPosRankSum=-0.019;SOR=0.381;ClippingRankSum=-1.265	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.4735:66:23:826:25:780:-58.9187,0.0,-103.572:29:45:63:35,33:564,0,624:1:.:1:.:.:.:0.000209978	./1:133.947:191:68:2457:27:856:-102.834,-56.1626,-338.471:27:17:158:.:.:.:.:1:.:.:.:-0.147664
chr19	54201810	.	GTT	G	1530.89	REJECT	NS=2;DP=256;DPB=331.6;AC=2;AN=2;AF=0.0;RO=91;AO=9;PRO=34.15;PAO=27.4;QR=3283;QA=273;PQR=1174.52;PQA=917.6;SRF=32;SRR=59;SAF=3;SAR=6;SRP=20.4059;SAP=5.18177;AB=0.0351562;ABP=483.482;RUN=1;RPP=5.18177;RPPR=3.22506;RPL=3.0;RPR=6.0;EPP=9.04217;EPPR=4.94315;DPRA=0.0;ODDS=123.035;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=4;MEANALT=15.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.947:65:23:826:5:138:-58.9187,-59.2318,-181.676:5:8:59:.:.:1:.:.:.:0.000209978	./1:133.947:191:68:2457:4:135:-102.834,-118.773,-433.144:4:3:158:.:.:1:.:.:.:-0.147664
chr19	54201875	.	C	G	5286.86	REJECT	NS=2;DP=315;DPB=361.0;AC=2;AN=4;AF=0.5;RO=171;AO=190;PRO=0.0;PAO=0.0;QR=6109;QA=7039;PQR=0.0;PQA=0.0;SRF=82;SRR=89;SAF=90;SAR=100;SRP=3.63253;SAP=4.15318;AB=0.526316;ABP=5.18177;RUN=1;RPP=4.65605;RPPR=3.63253;RPL=101.0;RPR=89.0;EPP=9.59329;EPPR=4.03889;DPRA=0.0;ODDS=240.297;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9842;MQMR=59.5556;PAIRED=0.984211;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2785;Dels=0.0;FS=0.644;HaplotypeScore=32.8748;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.3645;QD=17.31;ReadPosRankSum=1.297;SOR=0.638;ClippingRankSum=0.288	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:49:1791:39:1437:-105.544,0.0,-137.408:38:45:85:45,38:1275,0,1553:1:.:1:.:.:.:0.000209978	0/1:129.501:271:122:4318:151:5602:-430.09,0.0,-314.278:149:55:271:121,148:5349,0,3902:.:1:1:.:.:.:-0.147664
chr19	54649671	.	T	C	11686.3	REJECT	NS=2;DP=321;DPB=369.0;AC=4;AN=4;AF=1.0;RO=0;AO=368;PRO=0.0;PAO=0.0;QR=0;QA=13831;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=175;SAR=193;SRP=0.0;SAP=4.92214;AB=0.0;ABP=0.0;RUN=1;RPP=3.10471;RPPR=0.0;RPL=182.0;RPR=186.0;EPP=4.16685;EPPR=0.0;DPRA=0.0;ODDS=70.3829;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9592;MQMR=0.0;PAIRED=0.994565;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.673;Dels=0.04;FS=2.7295;HaplotypeScore=22.1981;MLEAC=2;MLEAF=1.0;MQ=59.975;MQRankSum=-1.327;QD=30.455;ReadPosRankSum=0.812;SOR=0.4225;ClippingRankSum=1.624	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:127.734:104:0:0:106:3986:-358.743,-28.6919,0.0:102:98:104:3,99:2823,213,0:1:.:1:.:.:.:0.000209978	1/1:127.734:262:0:0:262:9845:-884.294,-69.7458,0.0:261:100:261:0,261:11015,768,0:.:1:1:.:.:.:-0.147664
chr19	54652203	.	T	C	4846.78	REJECT	NS=2;DP=298;DPB=339.0;AC=2;AN=4;AF=0.5;RO=165;AO=173;PRO=0.0;PAO=0.0;QR=5827;QA=6475;PQR=0.0;PQA=0.0;SRF=85;SRR=80;SAF=83;SAR=90;SRP=3.33931;SAP=3.62534;AB=0.510324;ABP=3.32417;RUN=1;RPP=10.8552;RPPR=4.0763;RPL=74.0;RPR=99.0;EPP=3.12327;EPPR=3.33931;DPRA=0.0;ODDS=214.935;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993939;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.526;Dels=0.0;FS=1.826;HaplotypeScore=5.8632;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1665;QD=17.76;ReadPosRankSum=-0.5445;SOR=0.7225;ClippingRankSum=-1.137	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:125.4745:76:37:1279:41:1435:-108.093,0.0,-94.0938:40:53:76:35,39:1274,0,1071:1:.:1:.:.:.:0.000209978	0/1:125.4745:259:128:4548:132:5040:-383.395,0.0,-338.758:132:51:258:124,132:4887,0,4120:.:1:1:.:.:.:-0.147664
chr19	54657069	.	C	T	2375.01	PASS	SOMATIC;NS=2;DP=338;DPB=338.0;AC=1;AN=3;AF=0.25;RO=246;AO=92;PRO=0.0;PAO=0.0;QR=9407;QA=3484;PQR=0.0;PQA=0.0;SRF=156;SRR=90;SAF=60;SAR=32;SRP=41.4613;SAP=21.515;AB=0.369478;ABP=39.8556;RUN=1;RPP=12.4515;RPPR=4.74042;RPL=36.0;RPR=56.0;EPP=12.4515;EPPR=7.28263;DPRA=2.79775;ODDS=56.5545;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9472;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-1.751;Dels=0.0;FS=0.501;HaplotypeScore=4.9647;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.165;QD=12.53;ReadPosRankSum=-0.41;SOR=0.765	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:147.505:87:89:3425:0:0:0.0,-24.1353,-308.348:0:0:87:85,0:.:0.0:0:.:.:.:0:.:.:0:0.000209978	0/1:123.2525:249:157:5982:92:3484:-246.362,0.0,-470.663:92:37:249:153,91:37.0:0.379:2:3147,0,5950:.:1:1:.:.:1:-0.147664
chr19	54657815	.	A	G	4183.535	REJECT	NS=2;DP=263;DPB=304.0;AC=2;AN=4;AF=0.5;RO=151;AO=153;PRO=0.0;PAO=0.0;QR=5587;QA=5857;PQR=0.0;PQA=0.0;SRF=58;SRR=93;SAF=65;SAR=88;SRP=20.6265;SAP=10.5182;AB=0.503289;ABP=3.03887;RUN=1;RPP=74.5553;RPPR=40.4143;RPL=112.0;RPR=41.0;EPP=16.6494;EPPR=9.35215;DPRA=0.0;ODDS=254.115;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.608;Dels=0.0;FS=1.9845;HaplotypeScore=4.8152;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.327;QD=17.575;ReadPosRankSum=-0.76;SOR=0.6625;ClippingRankSum=0.348	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:82:40:1492:42:1618:-123.457,0.0,-112.117:42:51:82:40,42:1406,0,1406:1:.:1:.:.:.:0.000209978	0/1:129.501:222:111:4095:111:4239:-321.244,0.0,-308.289:111:50:222:111,111:4102,0,3841:.:1:1:.:.:.:-0.147664
chr20	9288522	.	G	A	9883.73	REJECT	NS=2;DP=373;DPB=426.0;AC=2;AN=4;AF=0.5;RO=102;AO=323;PRO=0.0;PAO=0.0;QR=3920;QA=12369;PQR=0.0;PQA=0.0;SRF=47;SRR=55;SAF=138;SAR=185;SRP=4.37279;SAP=17.861;AB=0.758216;ABP=249.722;RUN=1;RPP=14.3114;RPPR=3.7767;RPL=182.0;RPR=141.0;EPP=4.52294;EPPR=15.2727;DPRA=0.0;ODDS=113.875;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1855;Dels=0.0;FS=7.8555;HaplotypeScore=7.7987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.353;QD=23.94;ReadPosRankSum=0.5595;SOR=0.944;ClippingRankSum=-0.321	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.305:105:63:2405:43:1693:-123.654,0.0,-187.733:42:40:105:62,42:1454,0,2242:1:.:1:.:.:.:-0.000126912	0/1:122.305:320:39:1515:280:10676:-873.845,0.0,-49.889:280:88:319:39,280:10963,0,756:.:1:1:.:.:.:-0.000112573
chr20	9368102	.	A	G	1582.54	REJECT	NS=2;DP=337;DPB=383.0;AC=2;AN=4;AF=0.5;RO=304;AO=79;PRO=0.0;PAO=0.0;QR=11757;QA=3014;PQR=0.0;PQA=0.0;SRF=192;SRR=112;SAF=53;SAR=26;SRP=48.7255;SAP=23.0483;AB=0.206266;ABP=290.036;RUN=1;RPP=12.9331;RPPR=42.1254;RPL=30.0;RPR=49.0;EPP=10.954;EPPR=34.1252;DPRA=0.0;ODDS=45.7756;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996711;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7275;Dels=0.0;FS=0.0;HaplotypeScore=7.7321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.009;QD=10.335;ReadPosRankSum=-0.7925;SOR=0.701;ClippingRankSum=1.722	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:89:41:1574:49:1890:-145.752,0.0,-117.294:49:55:89:39,49:1742,0,1379:1:.:1:.:.:.:-0.000126912	0/1:129.501:292:263:10183:30:1124:-21.7452,0.0,-836.563:30:10:292:262,30:379,0,10465:.:1:1:.:.:.:-0.000112573
chr20	9370506	.	G	GT	817.215	REJECT	NS=2;DP=271;DPB=331.95;AC=2;AN=4;AF=0.5;RO=207;AO=50;PRO=64.5;PAO=51.5;QR=7766;QA=1754;PQR=2321.5;PQA=1838.5;SRF=140;SRR=67;SAF=35;SAR=15;SRP=58.9126;SAP=20.3821;AB=0.184502;ABP=237.313;RUN=1;RPP=17.0814;RPPR=28.1973;RPL=16.0;RPR=34.0;EPP=5.78978;EPPR=7.63648;DPRA=0.0;ODDS=10.4844;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=1;MEANALT=5.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985507;technology.ILLUMINA=1.0;BaseQRankSum=-0.32;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.443;QD=9.21;ReadPosRankSum=0.997;SOR=0.787;ClippingRankSum=0.591	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.071:70:33:1213:31:1094:-83.3147,0.0,-103.962:33:48:68:37,35:728,0,845:1:.:1:.:.:.:-0.000126912	0/1:45.5333:202:174:6553:19:660:-6.98941,0.0,-570.718:19:10:193:.:.:.:.:1:.:.:.:-0.000112573
chr20	9374341	.	A	T	1700.24	REJECT	NS=2;DP=271;DPB=306.0;AC=2;AN=4;AF=0.5;RO=227;AO=79;PRO=0.0;PAO=0.0;QR=8737;QA=2953;PQR=0.0;PQA=0.0;SRF=75;SRR=152;SAF=27;SAR=52;SRP=59.7269;SAP=20.1897;AB=0.25817;ABP=158.448;RUN=1;RPP=15.1321;RPPR=56.8188;RPL=50.0;RPR=29.0;EPP=10.954;EPPR=6.46361;DPRA=0.0;ODDS=95.6269;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995595;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4565;Dels=0.0;FS=2.468;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.577;QD=13.765;ReadPosRankSum=0.225;SOR=0.7325;ClippingRankSum=0.615	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:21:783:48:1755:-139.37,0.0,-51.82:47:69:68:21,46:1691,0,632:1:.:1:.:.:.:-0.000126912	0/1:129.501:236:206:7954:31:1198:-43.5735,0.0,-651.297:31:13:236:205,31:668,0,8130:.:1:1:.:.:.:-0.000112573
chr20	10511586	.	A	T	6393.21	REJECT	NS=2;DP=254;DPB=291.0;AC=2;AN=4;AF=0.5;RO=69;AO=222;PRO=0.0;PAO=0.0;QR=2557;QA=8305;PQR=0.0;PQA=0.0;SRF=38;SRR=31;SAF=121;SAR=101;SRP=4.55236;SAP=6.92286;AB=0.762887;ABP=177.691;RUN=1;RPP=211.511;RPPR=84.8654;RPL=38.0;RPR=184.0;EPP=3.63631;EPPR=5.55942;DPRA=0.0;ODDS=113.725;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9855;PAIRED=0.995495;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1505;Dels=0.0;FS=2.731;HaplotypeScore=5.8562;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.2895;QD=24.32;ReadPosRankSum=0.226;SOR=0.592;ClippingRankSum=-1.593	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:71:36:1289:36:1324:-99.7425,0.0,-96.5879:36:50:71:35,36:1190,0,1140:1:.:1:.:.:.:-0.000126912	0/1:129.501:218:33:1268:186:6981:-568.721,0.0,-54.7818:185:85:218:33,185:7065,0,770:.:1:1:.:.:.:-0.000112573
chr20	25504932	.	G	C	1460.31	REJECT	NS=2;DP=351;DPB=401.0;AC=2;AN=4;AF=0.5;RO=320;AO=81;PRO=0.0;PAO=0.0;QR=12334;QA=3085;PQR=0.0;PQA=0.0;SRF=166;SRR=154;SAF=35;SAR=46;SRP=3.98746;SAP=6.2541;AB=0.201995;ABP=312.329;RUN=1;RPP=3.25157;RPPR=16.1477;RPL=42.0;RPR=39.0;EPP=22.5536;EPPR=18.6449;DPRA=0.0;ODDS=123.967;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987654;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.05;Dels=0.0;FS=3.6435;HaplotypeScore=8.7898;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3895;QD=8.11;ReadPosRankSum=0.3585;SOR=0.893;ClippingRankSum=-1.416	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:57:2212:41:1550:-112.96,0.0,-172.546:40:42:97:56,40:1337,0,2007:1:.:1:.:.:.:-0.000126912	0/1:129.501:302:263:10122:40:1535:-55.9991,0.0,-828.361:40:13:302:262,40:809,0,10373:.:1:1:.:.:.:-0.000112573
chr20	30959704	.	A	G	2190.94	REJECT	NS=1;DP=158;DPB=158.0;AC=1;AN=4;AF=0.5;RO=81;AO=77;PRO=0.0;PAO=0.0;QR=2970;QA=2984;PQR=0.0;PQA=0.0;SRF=48;SRR=33;SAF=48;SAR=29;SRP=9.04217;SAP=13.1908;AB=0.487342;ABP=3.2302;RUN=1;RPP=4.39215;RPPR=19.7655;RPL=35.0;RPR=42.0;EPP=6.42261;EPPR=3.68051;DPRA=0.0;ODDS=499.497;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.974026;PAIREDR=0.987654;technology.ILLUMINA=1.0;BaseQRankSum=1.984;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.516;QD=16.76;ReadPosRankSum=0.826;SOR=0.847;ClippingRankSum=-0.87	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:155:81:2970:77:2984:-225.712,0.0,-224.437:75:48:155:79,73:2610,0,2782:1:.:1:.:.:.:-2.57577e-05	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0401453
chr20	31019024	.	C	T	5616.3150000000005	REJECT	NS=2;DP=346;DPB=392.0;AC=2;AN=4;AF=0.5;RO=196;AO=196;PRO=0.0;PAO=0.0;QR=7464;QA=7572;PQR=0.0;PQA=0.0;SRF=96;SRR=100;SAF=91;SAR=105;SRP=3.18756;SAP=5.18177;AB=0.5;ABP=3.0103;RUN=1;RPP=10.4997;RPPR=9.39177;RPL=111.0;RPR=85.0;EPP=4.60567;EPPR=4.60567;DPRA=0.0;ODDS=306.008;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994898;PAIREDR=0.994898;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6085;Dels=0.0;FS=1.9505;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2605;QD=18.37;ReadPosRankSum=1.294;SOR=0.8185;ClippingRankSum=1.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:127.768:91:46:1755:46:1798:-136.917,0.0,-133.045:46:50:91:45,46:1687,0,1658:1:.:1:.:.:.:-2.57577e-05	0/1:127.768:300:150:5709:150:5774:-438.126,0.0,-432.249:150:50:300:150,150:5582,0,5454:.:1:1:.:.:.:-0.0401453
chr20	31019360	.	AT	A	1284.66	REJECT	NS=2;DP=266;DPB=313.812;AC=2;AN=4;AF=0.5;RO=207;AO=59;PRO=61.0;PAO=42.0;QR=7789;QA=2188;PQR=2137.5;PQA=1459.5;SRF=85;SRR=122;SAF=26;SAR=33;SRP=17.3714;SAP=4.81373;AB=0.221805;ABP=181.822;RUN=1;RPP=11.2913;RPPR=18.9659;RPL=22.0;RPR=37.0;EPP=3.93042;EPPR=4.78314;DPRA=0.0;ODDS=82.7176;GTI=0;TYPE=del;CIGAR=1M1D14M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995169;technology.ILLUMINA=1.0;BaseQRankSum=1.127;FS=1.056;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-1.526;QD=13.03;ReadPosRankSum=1.404;SOR=0.481;ClippingRankSum=0.744	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:57:25:920:31:1149:-97.6346,0.0,-72.8998:32:56:57:25,34:871,0,596:1:.:1:.:.:.:-2.57577e-05	0/1:160.002:210:182:6869:28:1039:-37.1796,0.0,-626.82:28:13:210:.:.:.:.:1:.:.:.:-0.0401453
chr20	31022959	.	T	C	14757.75	REJECT	NS=2;DP=387;DPB=441.0;AC=4;AN=4;AF=1.0;RO=0;AO=441;PRO=0.0;PAO=0.0;QR=0;QA=16961;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=226;SRP=0.0;SAP=3.6061;AB=0.0;ABP=0.0;RUN=1;RPP=6.08778;RPPR=0.0;RPL=233.0;RPR=208.0;EPP=6.59988;EPPR=0.0;DPRA=0.0;ODDS=71.7132;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997732;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.9325;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.42;SOR=0.8055	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:107:0:0:108:4147:-373.253,-29.2696,0.0:107:100:107:0,106:4447,319,0:1:.:1:.:.:.:-2.57577e-05	1/1:129.501:333:0:0:333:12814:-1152.5,-90.1759,0.0:333:100:333:0,333:14336,990,0:.:1:1:.:.:.:-0.0401453
chr20	36030939	.	G	C	15306.7	REJECT	NS=2;DP=403;DPB=468.0;AC=4;AN=4;AF=1.0;RO=0;AO=468;PRO=0.0;PAO=0.0;QR=0;QA=17966;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=244;SAR=224;SRP=0.0;SAP=4.86626;AB=0.0;ABP=0.0;RUN=1;RPP=19.7139;RPPR=0.0;RPL=264.0;RPR=204.0;EPP=4.19811;EPPR=0.0;DPRA=0.0;ODDS=85.4043;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99359;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.966;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.025;SOR=1.023	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:127:0:0:130:4975:-447.687,-35.2156,0.0:127:100:127:0,124:5181,373,0:1:.:1:.:.:.:-2.57577e-05	1/1:129.501:338:0:0:338:12991:-1168.45,-91.5449,0.0:338:100:338:0,338:14543,1008,0:.:1:1:.:.:.:-0.0401453
chr20	40714479	.	G	A	1113.895	REJECT	NS=2;DP=314;DPB=363.0;AC=2;AN=4;AF=0.5;RO=298;AO=65;PRO=0.0;PAO=0.0;QR=11498;QA=2527;PQR=0.0;PQA=0.0;SRF=123;SRR=175;SAF=23;SAR=42;SRP=22.7139;SAP=15.0703;AB=0.179063;ABP=327.768;RUN=1;RPP=3.31097;RPPR=4.0596;RPL=34.0;RPR=31.0;EPP=7.05258;EPPR=42.9129;DPRA=0.0;ODDS=95.2507;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993289;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.151;Dels=0.0;FS=1.28;HaplotypeScore=4.9658;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.5835;QD=6.455;ReadPosRankSum=0.551;SOR=0.8905;ClippingRankSum=1.256	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:64:2412:32:1247:-86.2474,0.0,-191.095:32:33:95:63,32:1035,0,2100:1:.:1:.:.:.:-2.57577e-05	0/1:129.501:266:234:9086:33:1280:-42.8087,0.0,-744.941:33:12:266:233,33:643,0,9324:.:1:1:.:.:.:-0.0401453
chr20	40714524	.	C	G	943.6485	REJECT	NS=2;DP=218;DPB=253.0;AC=2;AN=4;AF=0.5;RO=201;AO=51;PRO=0.0;PAO=0.0;QR=7613;QA=1936;PQR=0.0;PQA=0.0;SRF=47;SRR=154;SAF=10;SAR=41;SRP=126.698;SAP=43.9277;AB=0.201581;ABP=198.709;RUN=1;RPP=10.206;RPPR=60.5813;RPL=32.0;RPR=19.0;EPP=3.05288;EPPR=3.28038;DPRA=0.0;ODDS=68.3159;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995025;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.2605;Dels=0.0;FS=1.095;HaplotypeScore=4.9314;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.695;QD=8.065;ReadPosRankSum=-0.0895;SOR=0.88;ClippingRankSum=0.89	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.39:68:42:1584:27:1016:-72.8044,0.0,-123.953:27:39:68:41,27:957,0,2522:1:.:1:.:.:.:-2.57577e-05	0/1:119.39:184:159:6029:24:920:-33.2207,0.0,-492.857:24:13:183:159,24:482,0,6151:.:1:1:.:.:.:-0.0401453
chr20	40743829	.	A	G	925.394	REJECT	NS=2;DP=237;DPB=270.0;AC=2;AN=4;AF=0.5;RO=220;AO=50;PRO=0.0;PAO=0.0;QR=8448;QA=1939;PQR=0.0;PQA=0.0;SRF=147;SRR=73;SAF=33;SAR=17;SRP=57.0602;SAP=14.1282;AB=0.185185;ABP=235.438;RUN=1;RPP=17.0814;RPPR=72.6553;RPL=16.0;RPR=34.0;EPP=9.26414;EPPR=7.78754;DPRA=0.0;ODDS=52.9977;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990909;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.969;Dels=0.0;FS=2.094;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.9615;QD=8.445;ReadPosRankSum=0.221;SOR=0.7355;ClippingRankSum=-1.484	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:62:37:1417:27:1041:-76.4002,0.0,-110.274:26:42:62:34,26:948,0,1205:1:.:1:.:.:.:-2.57577e-05	0/1:129.501:205:183:7031:23:898:-24.9885,0.0,-576.701:23:11:205:182,23:400,0,7189:.:1:1:.:.:.:-0.0401453
chr20	46267950	.	C	T	10956.349999999999	REJECT	NS=2;DP=286;DPB=327.0;AC=4;AN=4;AF=1.0;RO=0;AO=327;PRO=0.0;PAO=0.0;QR=0;QA=12679;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=99;SAR=228;SRP=0.0;SAP=113.516;AB=0.0;ABP=0.0;RUN=1;RPP=50.9886;RPPR=0.0;RPL=206.0;RPR=121.0;EPP=4.92943;EPPR=0.0;DPRA=0.0;ODDS=54.9046;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993884;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.82;SOR=1.773	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.0205:79:0:0:81:3117:-280.66,-21.9697,0.0:79:100:79:0,78:3148,235,0:1:.:1:.:.:.:-2.57577e-05	1/1:122.0205:246:0:0:246:9562:-860.147,-66.6629,0.0:246:100:246:0,246:10737,740,0:.:1:1:.:.:.:-0.0401453
chr20	46268493	.	A	G	1590.08	REJECT	NS=2;DP=350;DPB=405.0;AC=2;AN=4;AF=0.5;RO=320;AO=85;PRO=0.0;PAO=0.0;QR=12268;QA=3264;PQR=0.0;PQA=0.0;SRF=148;SRR=172;SAF=40;SAR=45;SRP=6.91895;SAP=3.64897;AB=0.209877;ABP=299.108;RUN=1;RPP=3.64897;RPPR=14.9805;RPL=40.0;RPR=45.0;EPP=3.03585;EPPR=22.7978;DPRA=0.0;ODDS=144.754;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99375;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.674;Dels=0.0;FS=1.942;HaplotypeScore=4.8967;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.213;QD=8.125;ReadPosRankSum=1.384;SOR=0.7385;ClippingRankSum=-0.273	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:65:2455:43:1661:-120.234,0.0,-191.701:42:39:106:64,41:1425,0,2312:1:.:1:.:.:.:-2.57577e-05	0/1:129.501:296:255:9813:42:1603:-63.7272,0.0,-802.225:42:14:296:254,42:900,0,10081:.:1:1:.:.:.:-0.0401453
chr20	46279836	.	ACAG	A	1468.62	REJECT	NS=2;DP=227;DPB=313.552;AC=2;AN=4;AF=0.5;RO=148;AO=63;PRO=112.0;PAO=101.0;QR=5676;QA=2364;PQR=4018.5;PQA=3603.5;SRF=97;SRR=51;SAF=43;SAR=20;SRP=34.0565;SAP=21.2438;AB=0.277533;ABP=100.593;RUN=1;RPP=8.83536;RPPR=3.5385;RPL=25.0;RPR=38.0;EPP=12.9715;EPPR=3.24505;DPRA=0.0;ODDS=6.58809;GTI=0;TYPE=del;CIGAR=1M3D25M;NUMALT=1;MEANALT=7.0;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.581;FS=1.303;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.448;QD=11.15;RPA=9,8;RU=CAG;ReadPosRankSum=0.115;SOR=0.812;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:28.6177:55:48:1842:5:197:-2.8181,0.0,-157.832:5:9:53:.:.:.:.:1:.:.:.:-2.57577e-05	0/1:129.501:207:100:3834:58:2167:-152.748,0.0,-333.118:62:37:166:109,66:2759,0,4651:.:1:1:.:.:.:-0.0401453
chr20	49191228	.	A	C	5475.66	REJECT	NS=2;DP=218;DPB=258.0;AC=2;AN=4;AF=0.5;RO=60;AO=198;PRO=0.0;PAO=0.0;QR=2336;QA=7372;PQR=0.0;PQA=0.0;SRF=20;SRR=40;SAF=56;SAR=142;SRP=17.4868;SAP=84.1225;AB=0.767442;ABP=163.295;RUN=1;RPP=256.393;RPPR=60.9162;RPL=175.0;RPR=23.0;EPP=32.6652;EPPR=5.32654;DPRA=0.0;ODDS=70.0238;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.979798;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6885;Dels=0.0;FS=6.774;HaplotypeScore=5.8656;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.124;QD=25.33;ReadPosRankSum=0.6015;SOR=1.101;ClippingRankSum=0.536	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:79:36:1400:43:1602:-122.821,0.0,-104.661:43:54:79:36,43:1461,0,1289:1:.:1:.:.:.:-2.57577e-05	0/1:129.501:179:24:936:155:5770:-470.638,0.0,-35.7921:155:87:179:24,155:5849,0,536:.:1:1:.:.:.:-0.0401453
chr20	49196284	.	C	T	2153.825	REJECT	NS=2;DP=329;DPB=382.0;AC=2;AN=4;AF=0.5;RO=284;AO=98;PRO=0.0;PAO=0.0;QR=10678;QA=3643;PQR=0.0;PQA=0.0;SRF=162;SRR=122;SAF=62;SAR=36;SRP=15.2439;SAP=17.989;AB=0.256545;ABP=199.671;RUN=1;RPP=4.4284;RPPR=3.04088;RPL=45.0;RPR=53.0;EPP=3.0103;EPPR=11.8491;DPRA=0.0;ODDS=94.716;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.996;Dels=0.0;FS=4.653;HaplotypeScore=9.7568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7825;QD=11.225;ReadPosRankSum=-0.369;SOR=1.143;ClippingRankSum=0.516	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3405:105:44:1637:62:2342:-182.105,0.0,-118.624:61:58:105:44,61:2160,0,1463:1:.:1:.:.:.:-2.57577e-05	0/1:117.3405:276:240:9041:36:1301:-42.7092,0.0,-738.514:36:13:276:240,36:622,0,9290:.:1:1:.:.:.:-0.0401453
chr20	51870849	.	T	C	15641.75	REJECT	NS=2;DP=415;DPB=476.0;AC=4;AN=4;AF=1.0;RO=0;AO=476;PRO=0.0;PAO=0.0;QR=0;QA=18108;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=243;SAR=233;SRP=0.0;SAP=3.46649;AB=0.0;ABP=0.0;RUN=1;RPP=3.08329;RPPR=0.0;RPL=240.0;RPR=236.0;EPP=3.46649;EPPR=0.0;DPRA=0.0;ODDS=79.1217;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9391;MQMR=0.0;PAIRED=0.989496;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7456;MLEAC=2;MLEAF=1.0;MQ=59.97;QD=30.795;SOR=0.829	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.467:119:0:0:120:4523:-407.022,-32.4871,0.0:119:100:119:0,119:4788,356,0:1:.:1:.:.:.:-2.57577e-05	1/1:126.467:355:0:0:356:13585:-1221.76,-96.3439,0.0:355:100:355:0,355:15068,1041,0:.:1:1:.:.:.:-0.0401453
chr20	52185814	.	C	A	4232.34	REJECT	NS=2;DP=282;DPB=325.0;AC=2;AN=4;AF=0.5;RO=174;AO=151;PRO=0.0;PAO=0.0;QR=6624;QA=5875;PQR=0.0;PQA=0.0;SRF=48;SRR=126;SAF=41;SAR=110;SRP=78.937;SAP=71.4764;AB=0.464615;ABP=6.54479;RUN=1;RPP=32.131;RPPR=21.031;RPL=98.0;RPR=53.0;EPP=5.44062;EPPR=7.05373;DPRA=0.0;ODDS=238.128;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994253;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.7635;Dels=0.0;FS=5.5635;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.2025;QD=16.815;ReadPosRankSum=0.6755;SOR=0.58;ClippingRankSum=-1.425	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.747:84:48:1817:37:1440:-106.974,0.0,-140.55:37:44:84:46,37:1355,0,1668:1:.:1:.:.:.:-2.57577e-05	0/1:121.747:239:126:4807:114:4435:-333.918,0.0,-367.413:114:48:239:125,114:4245,0,4630:.:1:1:.:.:.:-0.0401453
chr20	52188399	.	G	GA	10.3882	REJECT	NS=2;DP=270;DPB=304.235;AC=1;AN=4;AF=0.25;RO=236;AO=22;PRO=43.5;PAO=27.5;QR=8810;QA=759;PQR=1577.5;PQA=978.5;SRF=96;SRR=140;SAF=4;SAR=18;SRP=20.8237;SAP=22.3561;AB=0.115942;ABP=91.4113;RUN=1;RPP=3.40511;RPPR=64.8789;RPL=12.0;RPR=10.0;EPP=3.40511;EPPR=4.81373;DPRA=0.0;ODDS=2.29606;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=1;MEANALT=5.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.991525;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:10.3882:69:59:2200:8:266:-5.60057,0.0,-194.27:8:12:67:.:.:1:.:.:.:-2.57577e-05	0/0:126.091:201:177:6610:14:493:0.0,-10.6439,-589.795:14:7:191:.:.:0:.:.:.:-0.0401453
chr20	52297394	.	C	T	3011.27	PASS	SOMATIC;NS=2;DP=432;DPB=432.0;AC=1;AN=3;AF=0.25;RO=318;AO=114;PRO=0.0;PAO=0.0;QR=12263;QA=4445;PQR=0.0;PQA=0.0;SRF=214;SRR=104;SAF=81;SAR=33;SRP=85.6355;SAP=46.8969;AB=0.35625;ABP=60.4457;RUN=1;RPP=25.0298;RPPR=15.0558;RPL=40.0;RPR=74.0;EPP=3.31507;EPPR=12.8707;DPRA=2.85714;ODDS=70.7946;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=3.382;Dels=0.0;FS=2.763;HaplotypeScore=7.8433;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.591;QD=12.46;ReadPosRankSum=-1.235;SOR=0.915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:106:112:4291:0:0:0.0,-30.3197,-386.158:0:0:106:101,0:.:0.0:0:.:.:.:0:.:.:0:-2.57577e-05	0/1:129.501:320:206:7972:114:4445:-313.116,0.0,-630.343:114:36:320:194,109:39.0:0.365:2:4014,0,7962:.:1:1:.:.:1:-0.0401453
chr20	54945211	.	T	G	1947.63	PASS	SOMATIC;NS=2;DP=360;DPB=360.0;AC=1;AN=3;AF=0.25;RO=281;AO=79;PRO=0.0;PAO=0.0;QR=10755;QA=2994;PQR=0.0;PQA=0.0;SRF=172;SRR=109;SAF=41;SAR=38;SRP=33.6814;SAP=3.25768;AB=0.313492;ABP=79.1497;RUN=1;RPP=3.25768;RPPR=13.5895;RPL=38.0;RPR=41.0;EPP=15.1321;EPPR=16.0005;DPRA=2.33333;ODDS=68.3877;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.8101;MQMR=60.0;PAIRED=0.987342;PAIREDR=0.996441;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.194;Dels=0.0;FS=6.694;HaplotypeScore=9.6599;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.196;QD=10.22;ReadPosRankSum=0.469;SOR=0.369	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:142.303:103:108:4189:0:0:0.0,-29.2744,-377.031:0:0:103:99,0:.:0.0:0:.:.:.:0:.:.:0:-2.57577e-05	0/1:120.6515:252:173:6566:79:2994:-201.043,0.0,-522.401:79:31:252:167,76:37.0:0.311:2:2604,0,6584:.:1:1:.:.:1:-0.0401453
chr20	54945309	.	T	C	3398.95	PASS	SOMATIC;NS=2;DP=418;DPB=418.0;AC=1;AN=3;AF=0.25;RO=294;AO=124;PRO=0.0;PAO=0.0;QR=11261;QA=4792;PQR=0.0;PQA=0.0;SRF=152;SRR=142;SAF=62;SAR=62;SRP=3.7489;SAP=3.0103;AB=0.393651;ABP=33.9555;RUN=1;RPP=5.53201;RPPR=5.40335;RPL=68.0;RPR=56.0;EPP=3.0103;EPPR=8.00321;DPRA=3.05825;ODDS=65.2389;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.3065;MQMR=59.3299;PAIRED=1.0;PAIREDR=0.996599;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.41;Dels=0.0;FS=0.416;HaplotypeScore=5.8903;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=0.639;QD=13.88;ReadPosRankSum=-0.96;SOR=0.663	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.678:97:103:3912:0:0:0.0,-27.9069,-350.86:0:0:97:92,0:.:0.0:0:.:.:.:0:.:.:0:-2.57577e-05	0/1:119.339:315:191:7349:124:4792:-345.458,0.0,-575.405:124:39:315:186,117:38.0:0.378:2:4400,0,7318:.:1:1:.:.:1:-0.0401453
chr20	54959296	.	G	C	3190.85	PASS	SOMATIC;NS=2;DP=370;DPB=370.0;AC=1;AN=3;AF=0.25;RO=254;AO=116;PRO=0.0;PAO=0.0;QR=9808;QA=4500;PQR=0.0;PQA=0.0;SRF=150;SRR=104;SAF=77;SAR=39;SRP=21.1002;SAP=30.0414;AB=0.42029;ABP=18.2421;RUN=1;RPP=24.6501;RPPR=9.7128;RPL=41.0;RPR=75.0;EPP=10.4981;EPPR=14.0899;DPRA=2.93617;ODDS=59.6292;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996063;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.461;Dels=0.0;FS=5.045;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.276;QD=15.29;ReadPosRankSum=-0.736;SOR=1.009	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:89:94:3586:0:0:0.0,-25.4707,-322.798:0:0:89:85,0:.:0.0:0:.:.:.:0:.:.:0:-2.57577e-05	0/1:129.501:275:160:6222:116:4500:-330.006,0.0,-484.863:116:42:275:154,111:38.0:0.416:2:4232,0,6078:.:1:1:.:.:1:-0.0401453
chr20	54961463	.	T	C	13208.0	REJECT	NS=2;DP=356;DPB=410.0;AC=4;AN=4;AF=1.0;RO=0;AO=410;PRO=0.0;PAO=0.0;QR=0;QA=15433;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=203;SRP=0.0;SAP=3.09504;AB=0.0;ABP=0.0;RUN=1;RPP=10.6581;RPPR=0.0;RPL=224.0;RPR=186.0;EPP=3.77296;EPPR=0.0;DPRA=0.0;ODDS=71.6461;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.361;MQMR=0.0;PAIRED=0.997561;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.924;MLEAC=2;MLEAF=1.0;MQ=59.36;QD=30.465;SOR=0.756	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.7045:107:0:0:108:4089:-367.408,-29.2404,0.0:107:100:107:0,107:4483,321,0:1:.:1:.:.:.:-2.57577e-05	1/1:125.7045:302:0:0:302:11344:-1019.18,-80.9681,0.0:302:100:302:0,302:12629,882,0:.:1:1:.:.:.:-0.0401453
chr20	54961541	.	A	T	2515.59	PASS	SOMATIC;NS=2;DP=376;DPB=376.0;AC=1;AN=3;AF=0.25;RO=277;AO=98;PRO=0.0;PAO=0.0;QR=10628;QA=3748;PQR=0.0;PQA=0.0;SRF=119;SRR=158;SAF=46;SAR=52;SRP=14.9338;SAP=3.80798;AB=0.33677;ABP=70.3558;RUN=1;RPP=7.35324;RPPR=3.39442;RPL=56.0;RPR=42.0;EPP=13.7347;EPPR=21.8323;DPRA=3.42353;ODDS=53.4073;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.6787;PAIRED=1.0;PAIREDR=0.98917;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=1.785;Dels=0.0;FS=0.452;HaplotypeScore=4.9655;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.831;QD=11.33;ReadPosRankSum=-0.919;SOR=0.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:84:84:3162:0:0:0.0,-22.7685,-284.114:0:0:83:83,0:.:0.0:0:.:.:.:0:.:.:0:-2.57577e-05	0/1:129.501:290:193:7466:98:3748:-258.299,0.0,-591.705:98:34:290:182,92:38.0:0.335:2:3313,0,7434:.:1:1:.:.:1:-0.0401453
chr20	55067135	.	G	A	5641.31	REJECT	NS=2;DP=379;DPB=429.0;AC=2;AN=4;AF=0.5;RO=222;AO=204;PRO=0.0;PAO=0.0;QR=8580;QA=7771;PQR=0.0;PQA=0.0;SRF=105;SRR=117;SAF=99;SAR=105;SRP=4.41882;SAP=3.3935;AB=0.475524;ABP=5.24251;RUN=1;RPP=9.14152;RPPR=3.04943;RPL=90.0;RPR=114.0;EPP=10.206;EPPR=15.687;DPRA=0.0;ODDS=320.057;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995098;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4595;Dels=0.0;FS=5.813;HaplotypeScore=6.8313;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7725;QD=17.51;ReadPosRankSum=-0.027;SOR=0.951;ClippingRankSum=0.036	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:48:1857:52:1969:-150.124,0.0,-140.064:51:52:99:47,51:1816,0,1630:1:.:1:.:.:.:-2.57577e-05	0/1:129.501:329:174:6723:152:5802:-433.589,0.0,-516.386:152:47:326:174,152:5548,0,6531:.:1:1:.:.:.:-0.0401453
chr20	61502364	.	T	C	9465.61	REJECT	NS=2;DP=371;DPB=423.0;AC=2;AN=4;AF=0.5;RO=108;AO=315;PRO=0.0;PAO=0.0;QR=3999;QA=11892;PQR=0.0;PQA=0.0;SRF=44;SRR=64;SAF=144;SAR=171;SRP=11.0528;SAP=8.03571;AB=0.744681;ABP=222.976;RUN=1;RPP=20.9405;RPPR=23.5991;RPL=183.0;RPR=132.0;EPP=3.34808;EPPR=4.2971;DPRA=0.0;ODDS=202.772;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9683;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981481;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0145;Dels=0.0;FS=2.1785;HaplotypeScore=2.8713;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=0.462;QD=23.61;ReadPosRankSum=0.3455;SOR=0.5145;ClippingRankSum=1.672	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.07:103:56:2047:47:1819:-135.845,0.0,-156.345:47:46:103:56,47:1589,0,1880:1:.:1:.:.:.:0.000633376	0/1:118.07:319:52:1952:268:10073:-819.39,0.0,-89.3744:268:84:319:51,268:10260,0,1196:.:1:1:.:.:.:-0.0401453
chr20	61502378	.	C	T	8836.42	REJECT	NS=2;DP=351;DPB=397.0;AC=2;AN=4;AF=0.5;RO=101;AO=296;PRO=0.0;PAO=0.0;QR=3864;QA=11110;PQR=0.0;PQA=0.0;SRF=44;SRR=57;SAF=133;SAR=163;SRP=6.64375;SAP=9.61275;AB=0.745592;ABP=210.996;RUN=1;RPP=14.748;RPPR=4.06379;RPL=168.0;RPR=128.0;EPP=4.44817;EPPR=6.64375;DPRA=0.0;ODDS=187.88;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9628;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.399;Dels=0.0;FS=0.9815;HaplotypeScore=6.7989;MLEAC=1;MLEAF=0.5;MQ=59.985;MQRankSum=-0.072;QD=22.86;ReadPosRankSum=0.5785;SOR=0.603;ClippingRankSum=-1.525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.714:91:53:2019:38:1419:-103.095,0.0,-157.1:38:42:91:53,38:1248,0,1876:1:.:1:.:.:.:0.000633376	0/1:117.714:306:48:1845:258:9691:-788.827,0.0,-83.1235:258:84:306:48,258:9919,0,1171:.:1:1:.:.:.:-0.0401453
chr20	61502405	.	A	G	7088.96	REJECT	NS=2;DP=280;DPB=320.0;AC=2;AN=4;AF=0.5;RO=83;AO=237;PRO=0.0;PAO=0.0;QR=3234;QA=8953;PQR=0.0;PQA=0.0;SRF=33;SRR=50;SAF=97;SAR=140;SRP=10.5712;SAP=19.9514;AB=0.740625;ABP=163.944;RUN=1;RPP=19.9514;RPPR=3.24576;RPL=140.0;RPR=97.0;EPP=6.3179;EPPR=3.66436;DPRA=0.0;ODDS=139.545;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987952;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.0955;Dels=0.0;FS=2.25;HaplotypeScore=6.7793;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.112;QD=23.065;ReadPosRankSum=-0.0385;SOR=0.5135;ClippingRankSum=0.391	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.063:80:47:1821:33:1288:-94.2688,0.0,-142.268:33:41:80:47,33:1123,0,1723:1:.:1:.:.:.:0.000633376	0/1:120.063:240:36:1413:204:7665:-624.508,0.0,-62.1512:204:85:240:36,204:7816,0,883:.:1:1:.:.:.:-0.0401453
chr20	62331989	.	T	G	1838.06	REJECT	NS=1;DP=125;DPB=125.0;AC=1;AN=4;AF=0.5;RO=59;AO=66;PRO=0.0;PAO=0.0;QR=2138;QA=2487;PQR=0.0;PQA=0.0;SRF=26;SRR=33;SAF=25;SAR=41;SRP=4.81373;SAP=11.433;AB=0.528;ABP=3.86152;RUN=1;RPP=3.0103;RPPR=5.99147;RPL=33.0;RPR=33.0;EPP=6.30041;EPPR=9.23028;DPRA=0.0;ODDS=351.175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.393;FS=2.353;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.58;QD=17.23;ReadPosRankSum=0.672;SOR=0.963;ClippingRankSum=-1.088	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.656:124:59:2138:66:2487:-189.997,0.0,-158.558:66:53:124:57,66:2148,0,1873:1:.:1:.:.:.:0.000633376	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0401453
chr20	62332638	.	A	AC	10914.415	REJECT	NS=2;DP=344;DPB=464.2;AC=2;AN=3;AF=0.5;RO=0;AO=280;PRO=14.5;PAO=18.5;QR=0;QA=10213;PQR=462.0;PQA=612.0;SRF=0;SRR=0;SAF=122;SAR=158;SRP=0.0;SAP=13.0611;AB=0.73107;ABP=180.634;RUN=1;RPP=9.99003;RPPR=0.0;RPL=125.0;RPR=155.0;EPP=11.9754;EPPR=0.0;DPRA=0.0;ODDS=178.425;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=2;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996429;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=62332638;HOMLEN=2;HOMSEQ=CC;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.872;FS=7.009;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.151;QD=22.785;RPA=2,3;RU=C;ReadPosRankSum=0.828;SOR=0.506;STR;ClippingRankSum=0.921	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.3845:98:0:0:45:1576:-303.868,-167.535,-154.845:47:47:99:54,55:1373,0,1836:1:.:1:1:.:.:0.000633376	./1:119.3845:295:0:0:235:8637:-901.494,-145.201,-77.8397:248:84:281:92,279:9940,696,0:.:1:1:1:.:.:-0.0401453
chr20	62332641	.	T	C	6840.435	REJECT	NS=2;DP=346;DPB=464.2;AC=2;AN=2;AF=0.5;RO=0;AO=98;PRO=14.5;PAO=13.0;QR=0;QA=3749;PQR=462.0;PQA=409.0;SRF=0;SRR=0;SAF=56;SAR=42;SRP=0.0;SAP=7.35324;AB=0.255875;ABP=201.272;RUN=1;RPP=4.4284;RPPR=0.0;RPL=53.0;RPR=45.0;EPP=3.36483;EPPR=0.0;DPRA=0.0;ODDS=178.425;GTI=0;TYPE=snp;CIGAR=3M1X1M;NUMALT=2;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.989796;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.0705;Dels=0.0;FS=7.7145;HaplotypeScore=238.826;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.014;QD=10.54;ReadPosRankSum=-0.64;SOR=1.004;ClippingRankSum=0.081	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:119.3845:100:0:0:52:1966:-303.868,-130.218,-131.446:53:53:100:50,54:1783,0,1689:1:.:1:.:.:.:0.000633376	./1:119.3845:298:0:0:46:1783:-901.494,-717.102,-774.59:49:16:295:257,53:1384,0,9960:.:1:1:.:.:.:-0.0401453
chr21	15536025	.	CA	C	3240.99	REJECT	NS=2;DP=237;DPB=251.6;AC=2;AN=4;AF=0.5;RO=145;AO=127;PRO=6.5;PAO=6.5;QR=5401;QA=4612;PQR=166.0;PQA=166.0;SRF=94;SRR=51;SAF=81;SAR=46;SRP=30.7003;SAP=23.9556;AB=0.466912;ABP=5.59691;RUN=1;RPP=58.5624;RPPR=33.336;RPL=35.0;RPR=92.0;EPP=6.8574;EPPR=5.54119;DPRA=0.0;ODDS=213.753;GTI=0;TYPE=del;CIGAR=1M1D3M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2362;MQMR=60.0;PAIRED=0.984252;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=15536026;HOMLEN=1;HOMSEQ=A;SVLEN=-1;SVTYPE=DEL;BaseQRankSum=-0.017;FS=4.7;MLEAC=1;MLEAF=0.5;MQ=60.185;MQRankSum=0.9935;QD=15.715;RPA=2,1;RU=A;ReadPosRankSum=-0.4875;SOR=0.947;STR;ClippingRankSum=1.558	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9505:68:33:1241:35:1312:-99.7259,0.0,-93.3302:35:51:68:30,42:1100,0,1043:1:.:1:1:.:.:-0.00365044	0/1:118.9505:203:112:4160:92:3300:-241.65,0.0,-319.095:92:45:204:107,112:3245,0,4142:.:1:1:1:.:.:-0.00665809
chr21	15589167	.	T	C	4961.355	REJECT	NS=2;DP=323;DPB=363.0;AC=2;AN=4;AF=0.5;RO=183;AO=180;PRO=0.0;PAO=0.0;QR=6953;QA=6954;PQR=0.0;PQA=0.0;SRF=101;SRR=82;SAF=104;SAR=76;SRP=7.29391;SAP=12.4683;AB=0.495868;ABP=3.06414;RUN=1;RPP=28.5372;RPPR=10.4265;RPL=67.0;RPR=113.0;EPP=5.37479;EPPR=3.59173;DPRA=0.0;ODDS=168.821;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.983607;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.6715;Dels=0.0;FS=1.0025;HaplotypeScore=7.8458;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0035;QD=19.55;ReadPosRankSum=-0.0465;SOR=0.872;ClippingRankSum=0.62	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:78:29:1063:50:1930:-152.364,0.0,-74.3001:50:63:78:28,50:1775,0,938:1:.:1:.:.:.:-0.00365044	0/1:129.501:284:154:5890:130:5024:-374.957,0.0,-452.895:130:46:284:154,130:4775,0,5758:.:1:1:.:.:.:-0.00665809
chr21	15589279	.	C	G	3689.085	REJECT	NS=2;DP=252;DPB=290.0;AC=2;AN=4;AF=0.5;RO=151;AO=139;PRO=0.0;PAO=0.0;QR=5692;QA=5316;PQR=0.0;PQA=0.0;SRF=43;SRR=108;SAF=52;SAR=87;SRP=63.7684;SAP=22.1474;AB=0.47931;ABP=4.08855;RUN=1;RPP=53.7665;RPPR=15.1044;RPL=98.0;RPR=41.0;EPP=11.2744;EPPR=9.35215;DPRA=0.0;ODDS=215.381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.980132;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.261;Dels=0.0;FS=8.056;HaplotypeScore=3.8487;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.304;QD=17.915;ReadPosRankSum=0.867;SOR=0.6305;ClippingRankSum=1.524	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.1035:73:35:1286:40:1545:-118.798,0.0,-95.478:40:54:73:32,40:1469,0,1087:1:.:1:.:.:.:-0.00365044	0/1:119.1035:215:116:4406:99:3771:-280.988,0.0,-338.167:99:46:215:116,99:3546,0,4303:.:1:1:.:.:.:-0.00665809
chr21	25503065	.	T	A	4006.025	REJECT	NS=2;DP=265;DPB=299.0;AC=2;AN=4;AF=0.5;RO=151;AO=148;PRO=0.0;PAO=0.0;QR=5658;QA=5536;PQR=0.0;PQA=0.0;SRF=113;SRR=38;SAF=103;SAR=45;SRP=83.9012;SAP=52.3673;AB=0.494983;ABP=3.07566;RUN=1;RPP=42.6837;RPPR=75.503;RPL=48.0;RPR=100.0;EPP=3.5385;EPPR=4.75035;DPRA=0.0;ODDS=209.896;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993243;PAIREDR=0.993377;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.888;Dels=0.0;FS=2.573;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.347;QD=16.865;ReadPosRankSum=0.041;SOR=0.536;ClippingRankSum=-0.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.283:67:34:1271:33:1252:-94.6132,0.0,-96.2997:33:49:67:34,33:1131,0,1210:1:.:1:.:.:.:-0.00365044	0/1:122.283:231:117:4387:115:4284:-322.58,0.0,-331.849:114:49:231:117,114:4018,0,4194:.:1:1:.:.:.:-0.00665809
chr21	36174277	.	A	AG	13262.85	REJECT	NS=2;DP=369;DPB=492.571;AC=4;AN=4;AF=1.0;RO=1;AO=400;PRO=26.0;PAO=38.0;QR=22;QA=14924;PQR=834.5;PQA=1267.5;SRF=0;SRR=1;SAF=183;SAR=217;SRP=5.18177;SAP=9.28586;AB=0.0;ABP=0.0;RUN=1;RPP=5.63778;RPPR=5.18177;RPL=189.0;RPR=211.0;EPP=4.40004;EPPR=5.18177;DPRA=0.0;ODDS=64.8176;GTI=0;TYPE=ins;CIGAR=1M1I6M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.125;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=36174277;HOMLEN=2;HOMSEQ=GG;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.195;QD=33.245;RPA=2,3;RU=G;SOR=0.8855;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:97:0:0:94:3512:-325.656,-26.2749,0.0:101:100:101:48,128:3663,310,0:1:.:1:1:.:.:-0.00365044	1/1:129.501:322:1:22:306:11412:-1053.87,-83.5263,0.0:316:100:316:161,424:12811,951,0:.:1:1:1:.:.:-0.00665809
chr21	36174790	.	G	A	15385.55	REJECT	NS=2;DP=405;DPB=465.0;AC=4;AN=4;AF=1.0;RO=0;AO=465;PRO=0.0;PAO=0.0;QR=0;QA=17869;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=217;SAR=248;SRP=0.0;SAP=7.49801;AB=0.0;ABP=0.0;RUN=1;RPP=7.49801;RPPR=0.0;RPL=248.0;RPR=217.0;EPP=43.3997;EPPR=0.0;DPRA=0.0;ODDS=79.1771;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993548;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.7817;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.13;SOR=0.808	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:118:0:0:120:4622:-415.943,-32.5111,0.0:118:100:118:0,117:4884,351,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:345:0:0:345:13247:-1191.44,-93.4161,0.0:345:100:345:0,345:14818,1023,0:.:1:1:.:.:.:-0.00665809
chr21	36175845	.	GA	G	33.6605	REJECT	NS=2;DP=174;DPB=286.441;AC=2;AN=4;AF=0.5;RO=141;AO=19;PRO=125.5;PAO=103.5;QR=5292;QA=593;PQR=4467.0;PQA=3658.0;SRF=113;SRR=28;SAF=14;SAR=5;SRP=114.279;SAP=12.2676;AB=0.109195;ABP=233.835;RUN=1;RPP=22.325;RPPR=14.2373;RPL=3.0;RPR=16.0;EPP=4.03889;EPPR=3.39531;DPRA=0.0;ODDS=3.61276;GTI=0;TYPE=del;CIGAR=1M1D32M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=60.5263;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:33.2507:46:36:1357:4:134:-6.06858,0.0,-129.613:4:10:40:.:.:1:.:.:.:-0.00365044	0/1:15.7371:128:105:3935:15:459:-4.81519,0.0,-376.938:15:13:120:.:.:1:.:.:.:-0.00665809
chr21	36177039	.	C	A	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=22.3964;PAO=5.46786;QR=614;QA=48;PQR=798.638;PQA=167.666;SRF=6;SRR=12;SAF=0;SAR=3;SRP=7.35324;SAP=9.52472;AB=0.0340909;ABP=168.931;RUN=1;RPP=9.52472;RPPR=4.9405;RPL=0.0;RPR=3.0;EPP=9.52472;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:2:32:-12.4208,-40.3747,-379.669:2:7:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:1:16:-37.1275,-151.14,-1423.7:1:2:43:.:.:1:.:.:.:-0.00665809
chr21	36177039	.	C	T	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=4;PRO=22.3964;PAO=4.46786;QR=614;QA=46;PQR=798.638;PQA=151.666;SRF=6;SRR=12;SAF=0;SAR=4;SRP=7.35324;SAP=11.6962;AB=0.0454545;ABP=160.936;RUN=1;RPP=5.18177;RPPR=4.9405;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=52.5;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:1:14:-12.4208,-42.8963,-382.719:1:4:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:3:32:-37.1275,-150.242,-1422.66:3:7:43:.:.:1:.:.:.:-0.00665809
chr21	36177039	.	C	CT	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=4;AF=0.5;RO=18;AO=21;PRO=22.3964;PAO=19.8964;QR=614;QA=660;PQR=798.638;PQA=683.638;SRF=6;SRR=12;SAF=9;SAR=12;SRP=7.35324;SAP=3.94093;AB=0.238636;ABP=55.2243;RUN=1;RPP=11.386;RPPR=4.9405;RPL=15.0;RPR=6.0;EPP=3.94093;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=59.0476;MQMR=60.0;PAIRED=0.952381;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.942;FS=4.38;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=0.499;QD=2.35;RPA=18,19;RU=T;ReadPosRankSum=0.454;SOR=1.381;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.111:33:7:245:6:183:-12.4208,0.0,-24.3509:6:21:28:.:.:.:.:1:.:.:.:-0.00365044	0/1:129.501:92:11:369:15:477:-37.1275,0.0,-46.7389:24:46:51:26,34:347,0,199:.:1:1:.:.:.:-0.00665809
chr21	36177039	.	C	CTT	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=6;PRO=22.3964;PAO=18.8964;QR=614;QA=159;PQR=798.638;PQA=670.638;SRF=6;SRR=12;SAF=2;SAR=4;SRP=7.35324;SAP=4.45795;AB=0.0681818;ABP=145.538;RUN=1;RPP=8.80089;RPPR=4.9405;RPL=5.0;RPR=1.0;EPP=3.0103;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=ins;CIGAR=1M2I23M;NUMALT=8;MEANALT=15.0;LEN=2;MQM=53.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:1:15:-12.4208,-13.7806,-39.11:1:4:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:5:144:-37.1275,-28.1503,-77.8525:5:12:43:.:.:1:.:.:.:-0.00665809
chr21	36177039	.	CT	C	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=10;PRO=22.3964;PAO=11.6964;QR=614;QA=264;PQR=798.638;PQA=409.038;SRF=6;SRR=12;SAF=1;SAR=9;SRP=7.35324;SAP=16.9077;AB=0.113636;ABP=117.111;RUN=1;RPP=3.0103;RPPR=4.9405;RPL=5.0;RPR=5.0;EPP=3.87889;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=56.3;MQMR=60.0;PAIRED=0.8;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:7:176:-12.4208,-10.3981,-144.021:7:25:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:3:88:-37.1275,-67.434,-490.362:3:7:43:.:.:1:.:.:.:-0.00665809
chr21	36177039	.	CTT	C	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=22.3964;PAO=11.6964;QR=614;QA=85;PQR=798.638;PQA=409.038;SRF=6;SRR=12;SAF=2;SAR=1;SRP=7.35324;SAP=3.73412;AB=0.0545455;ABP=97.8049;RUN=1;RPP=3.73412;RPPR=4.9405;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=8;MEANALT=18.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:0:0:-12.4208,-24.3607,-159.843:0:0:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:3:85:-37.1275,-67.6939,-490.626:3:7:43:.:.:1:.:.:.:-0.00665809
chr21	36177058	.	G	T	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=22.3964;PAO=14.5536;QR=614;QA=42;PQR=798.638;PQA=521.152;SRF=6;SRR=12;SAF=3;SAR=0;SRP=7.35324;SAP=9.52472;AB=0.0340909;ABP=168.931;RUN=1;RPP=3.73412;RPPR=4.9405;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=snp;CIGAR=19M1X4M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:2:28:-12.4208,-21.8331,-143.135:2:7:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:1:14:-37.1275,-75.1678,-507.298:1:2:43:.:.:1:.:.:.:-0.00665809
chr21	36177059	.	A	G	439.534	REJECT	NS=2;DP=88;DPB=151.333;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=22.3964;PAO=15.9286;QR=614;QA=18;PQR=798.638;PQA=573.527;SRF=6;SRR=12;SAF=3;SAR=0;SRP=7.35324;SAP=9.52472;AB=0.0340909;ABP=168.931;RUN=1;RPP=9.52472;RPPR=4.9405;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=4.9405;DPRA=0.0;ODDS=28.5662;GTI=0;TYPE=snp;CIGAR=20M1X3M;NUMALT=8;MEANALT=15.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:120.111:33:7:245:2:16:-12.4208,-22.9153,-144.591:2:7:28:.:.:1:.:.:.:-0.00365044	./1:160.002:55:11:369:1:2:-37.1275,-76.7665,-504.055:1:2:43:.:.:1:.:.:.:-0.00665809
chr21	36180986	.	A	G	13378.55	REJECT	NS=2;DP=351;DPB=396.0;AC=4;AN=4;AF=1.0;RO=0;AO=395;PRO=0.0;PAO=0.0;QR=0;QA=15173;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=211;SAR=184;SRP=0.0;SAP=7.0179;AB=0.0;ABP=0.0;RUN=1;RPP=3.14773;RPPR=0.0;RPL=200.0;RPR=195.0;EPP=3.67549;EPPR=0.0;DPRA=0.0;ODDS=59.2465;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992405;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8698;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.16;SOR=0.8275	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.1865:88:0:0:88:3372:-303.571,-23.8554,0.0:87:100:87:0,87:3709,262,0:1:.:1:.:.:.:-0.00365044	1/1:124.1865:306:0:0:307:11801:-1061.43,-83.1386,0.0:306:100:306:0,306:13182,912,0:.:1:1:.:.:.:-0.00665809
chr21	36181014	.	G	A	13000.15	REJECT	NS=2;DP=349;DPB=398.0;AC=4;AN=4;AF=1.0;RO=0;AO=398;PRO=0.0;PAO=0.0;QR=0;QA=15022;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=183;SRP=0.0;SAP=8.5972;AB=0.0;ABP=0.0;RUN=1;RPP=7.28777;RPPR=0.0;RPL=185.0;RPR=213.0;EPP=21.3642;EPPR=0.0;DPRA=0.0;ODDS=64.8379;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997487;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.8208;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.675;SOR=0.898	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.8265:96:0:0:97:3699:-332.964,-26.2837,0.0:96:100:96:0,96:4002,288,0:1:.:1:.:.:.:-0.00365044	1/1:123.8265:301:0:0:301:11323:-1018.4,-81.4361,0.0:301:100:301:0,301:12585,876,0:.:1:1:.:.:.:-0.00665809
chr21	36182049	.	G	C	10219.2	REJECT	NS=2;DP=388;DPB=445.0;AC=2;AN=4;AF=0.5;RO=104;AO=340;PRO=0.0;PAO=0.0;QR=3935;QA=12777;PQR=0.0;PQA=0.0;SRF=49;SRR=55;SAF=162;SAR=178;SRP=3.76196;SAP=4.64529;AB=0.764045;ABP=272.492;RUN=1;RPP=8.01746;RPPR=4.34659;RPL=156.0;RPR=184.0;EPP=4.64529;EPPR=9.77527;DPRA=0.0;ODDS=147.359;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=59.7692;PAIRED=0.994118;PAIREDR=0.990385;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0565;Dels=0.0;FS=4.257;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.004;QD=24.16;ReadPosRankSum=0.062;SOR=0.7105;ClippingRankSum=-0.599	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:60:2210:52:1954:-145.55,0.0,-168.57:51:46:110:59,50:1683,0,1994:1:.:1:.:.:.:-0.00365044	0/1:129.501:331:44:1725:288:10823:-883.588,0.0,-65.2887:287:87:331:44,287:10997,0,966:.:1:1:.:.:.:-0.00665809
chr21	36182159	.	G	A	8704.06	REJECT	NS=2;DP=338;DPB=391.0;AC=2;AN=4;AF=0.5;RO=104;AO=287;PRO=0.0;PAO=0.0;QR=3953;QA=10947;PQR=0.0;PQA=0.0;SRF=50;SRR=54;SAF=158;SAR=129;SRP=3.34437;SAP=9.3734;AB=0.734015;ABP=188.996;RUN=1;RPP=17.0;RPPR=5.09825;RPL=122.0;RPR=165.0;EPP=4.28897;EPPR=3.09382;DPRA=0.0;ODDS=182.353;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0348;MQMR=60.0;PAIRED=0.993031;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6415;Dels=0.0;FS=3.3225;HaplotypeScore=8.7811;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=0.4815;QD=23.275;ReadPosRankSum=0.0745;SOR=0.8615;ClippingRankSum=-0.741	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.591:104:59:2202:46:1742:-128.346,0.0,-169.764:45:43:104:59,45:1475,0,2084:1:.:1:.:.:.:-0.00365044	0/1:120.591:285:45:1751:241:9205:-750.506,0.0,-80.0513:240:84:285:45,240:9367,0,1123:.:1:1:.:.:.:-0.00665809
chr21	36184939	.	C	A	9684.73	REJECT	NS=2;DP=370;DPB=419.0;AC=2;AN=4;AF=0.5;RO=102;AO=317;PRO=0.0;PAO=0.0;QR=3849;QA=12116;PQR=0.0;PQA=0.0;SRF=48;SRR=54;SAF=156;SAR=161;SRP=3.7767;SAP=3.18155;AB=0.756563;ABP=242.572;RUN=1;RPP=14.5253;RPPR=11.5259;RPL=179.0;RPR=138.0;EPP=7.29159;EPPR=4.37279;DPRA=0.0;ODDS=215.167;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990536;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9315;Dels=0.0;FS=4.078;HaplotypeScore=6.9296;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2665;QD=24.375;ReadPosRankSum=0.164;SOR=0.9865;ClippingRankSum=0.511	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:48:1835:47:1769:-133.499,0.0,-139.445:46:49:94:48,46:1554,0,1650:1:.:1:.:.:.:-0.00365044	0/1:129.501:323:54:2014:270:10347:-842.916,0.0,-93.4159:269:83:323:54,268:10501,0,1264:.:1:1:.:.:.:-0.00665809
chr21	36186319	.	G	A	9796.87	REJECT	NS=2;DP=362;DPB=419.0;AC=2;AN=4;AF=0.5;RO=99;AO=320;PRO=0.0;PAO=0.0;QR=3781;QA=12236;PQR=0.0;PQA=0.0;SRF=55;SRR=44;SAF=159;SAR=161;SRP=5.66432;SAP=3.03744;AB=0.763723;ABP=256.129;RUN=1;RPP=9.95901;RPPR=4.78696;RPL=176.0;RPR=144.0;EPP=7.59754;EPPR=4.78696;DPRA=0.0;ODDS=165.797;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99375;PAIREDR=0.989899;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0405;Dels=0.0;FS=2.635;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2705;QD=25.79;ReadPosRankSum=-0.162;SOR=0.5595;ClippingRankSum=-1.426	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.819:111:54:2054:58:2147:-162.904,0.0,-154.533:58:52:111:53,58:2033,0,1871:1:.:1:.:.:.:-0.00365044	0/1:118.819:306:45:1727:262:10089:-824.291,0.0,-72.2075:261:85:306:45,261:10284,0,1036:.:1:1:.:.:.:-0.00665809
chr21	36186396	.	A	G	8935.35	REJECT	NS=2;DP=346;DPB=396.0;AC=2;AN=4;AF=0.5;RO=101;AO=295;PRO=0.0;PAO=0.0;QR=3895;QA=11202;PQR=0.0;PQA=0.0;SRF=61;SRR=40;SAF=160;SAR=135;SRP=12.4917;SAP=7.61088;AB=0.744949;ABP=209.388;RUN=1;RPP=3.19432;RPPR=3.54779;RPL=145.0;RPR=150.0;EPP=4.2543;EPPR=4.75178;DPRA=0.0;ODDS=200.613;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989831;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3385;Dels=0.0;FS=10.1585;HaplotypeScore=8.876;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.5015;QD=23.805;ReadPosRankSum=0.7575;SOR=0.5455;ClippingRankSum=-0.918	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:53:2036:46:1741:-129.89,0.0,-156.442:45:46:97:51,45:1503,0,1812:1:.:1:.:.:.:-0.00365044	0/1:129.501:297:48:1859:249:9461:-770.547,0.0,-86.8063:249:84:297:48,249:9653,0,1212:.:1:1:.:.:.:-0.00665809
chr21	36186747	.	T	C	9697.61	REJECT	NS=2;DP=355;DPB=405.0;AC=2;AN=4;AF=0.5;RO=90;AO=315;PRO=0.0;PAO=0.0;QR=3343;QA=12086;PQR=0.0;PQA=0.0;SRF=40;SRR=50;SAF=140;SAR=175;SRP=5.42305;SAP=11.4549;AB=0.777778;ABP=274.444;RUN=1;RPP=8.80779;RPPR=4.55446;RPL=172.0;RPR=143.0;EPP=3.07234;EPPR=3.0103;DPRA=0.0;ODDS=118.078;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993651;PAIREDR=0.977778;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.833;Dels=0.0;FS=1.5325;HaplotypeScore=4.8906;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.305;QD=26.04;ReadPosRankSum=-0.028;SOR=0.475;ClippingRankSum=1.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:48:1830:48:1784:-134.579,0.0,-138.736:48:50:95:46,48:1681,0,1599:1:.:1:.:.:.:-0.00365044	0/1:129.501:307:42:1513:267:10302:-842.954,0.0,-52.3984:266:86:307:40,265:10551,0,678:.:1:1:.:.:.:-0.00665809
chr21	36187446	.	C	G	1393.0900000000001	REJECT	NS=2;DP=392;DPB=442.0;AC=2;AN=4;AF=0.5;RO=360;AO=82;PRO=0.0;PAO=0.0;QR=13589;QA=2992;PQR=0.0;PQA=0.0;SRF=210;SRR=150;SAF=48;SAR=34;SRP=24.725;SAP=8.20065;AB=0.18552;ABP=382.694;RUN=1;RPP=3.0103;RPPR=8.43898;RPL=41.0;RPR=41.0;EPP=9.78953;EPPR=11.7203;DPRA=0.0;ODDS=76.5506;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994444;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.072;Dels=0.0;FS=2.3955;HaplotypeScore=9.6477;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6745;QD=8.09;ReadPosRankSum=1.1565;SOR=0.694;ClippingRankSum=0.143	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:54:1986:44:1580:-115.701,0.0,-152.259:43:45:95:51,42:1385,0,1763:1:.:1:.:.:.:-0.00365044	0/1:129.501:343:306:11603:38:1412:-33.8988,0.0,-950.458:38:11:343:304,38:571,0,11830:.:1:1:.:.:.:-0.00665809
chr21	36187686	.	T	C	8866.43	REJECT	NS=2;DP=331;DPB=388.0;AC=2;AN=4;AF=0.5;RO=98;AO=290;PRO=0.0;PAO=0.0;QR=3772;QA=11097;PQR=0.0;PQA=0.0;SRF=58;SRR=40;SAF=154;SAR=136;SRP=10.1895;SAP=5.43636;AB=0.747423;ABP=209.323;RUN=1;RPP=3.04025;RPPR=4.4284;RPL=144.0;RPR=146.0;EPP=3.04025;EPPR=4.4284;DPRA=0.0;ODDS=163.063;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996552;PAIREDR=0.989796;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.63;Dels=0.0;FS=4.572;HaplotypeScore=2.9961;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1275;QD=25.88;ReadPosRankSum=0.5655;SOR=0.4665;ClippingRankSum=-0.559	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.4095:108:56:2139:57:2161:-163.861,0.0,-161.913:55:50:108:51,53:1966,0,1849:1:.:1:.:.:.:-0.00365044	0/1:120.4095:275:42:1633:233:8936:-729.32,0.0,-72.3872:233:85:275:42,233:9188,0,994:.:1:1:.:.:.:-0.00665809
chr21	36187900	.	T	G	10693.9	REJECT	NS=2;DP=393;DPB=449.0;AC=2;AN=4;AF=0.5;RO=101;AO=348;PRO=0.0;PAO=0.0;QR=3841;QA=13345;PQR=0.0;PQA=0.0;SRF=56;SRR=45;SAF=208;SAR=140;SRP=5.61177;SAP=31.8634;AB=0.775056;ABP=298.065;RUN=1;RPP=3.63429;RPPR=4.06379;RPL=179.0;RPR=169.0;EPP=3.03526;EPPR=4.75178;DPRA=0.0;ODDS=158.568;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991379;PAIREDR=0.990099;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.625;Dels=0.0;FS=10.341;HaplotypeScore=6.8606;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.324;QD=26.415;ReadPosRankSum=0.003;SOR=0.716;ClippingRankSum=0.64	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.9695:109:53:2049:57:2187:-167.022,0.0,-154.601:57:52:109:52,57:2130,0,1787:1:.:1:.:.:.:-0.00365044	0/1:118.9695:338:48:1792:291:11158:-911.742,0.0,-69.4223:290:86:338:48,289:11333,0,1010:.:1:1:.:.:.:-0.00665809
chr21	36188046	.	C	T	9270.96	REJECT	NS=2;DP=352;DPB=409.0;AC=2;AN=4;AF=0.5;RO=98;AO=311;PRO=0.0;PAO=0.0;QR=3673;QA=11617;PQR=0.0;PQA=0.0;SRF=38;SRR=60;SAF=151;SAR=160;SRP=13.7347;SAP=3.57586;AB=0.760391;ABP=243.884;RUN=1;RPP=3.85515;RPPR=31.7269;RPL=150.0;RPR=161.0;EPP=10.6139;EPPR=3.0103;DPRA=0.0;ODDS=151.003;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.666;Dels=0.0;FS=7.877;HaplotypeScore=4.8093;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8905;QD=25.6;ReadPosRankSum=0.6715;SOR=0.57;ClippingRankSum=0.314	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:113:54:2022:60:2242:-170.922,0.0,-151.111:60:53:113:53,60:2167,0,1836:1:.:1:.:.:.:-0.00365044	0/1:129.501:295:44:1651:251:9375:-763.409,0.0,-68.6947:251:85:295:44,251:9549,0,997:.:1:1:.:.:.:-0.00665809
chr21	36190040	.	A	C	13743.15	REJECT	NS=2;DP=362;DPB=421.0;AC=4;AN=4;AF=1.0;RO=0;AO=421;PRO=0.0;PAO=0.0;QR=0;QA=16152;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=190;SAR=231;SRP=0.0;SAP=11.6807;AB=0.0;ABP=0.0;RUN=1;RPP=3.26304;RPPR=0.0;RPL=207.0;RPR=214.0;EPP=3.6344;EPPR=0.0;DPRA=0.0;ODDS=77.9132;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9947;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.6;SOR=0.8895	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:117:0:0:118:4499:-404.889,-31.9622,0.0:117:100:117:0,117:4697,351,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:303:0:0:303:11653:-1048.15,-82.0706,0.0:303:100:303:0,303:13036,903,0:.:1:1:.:.:.:-0.00665809
chr21	36190600	.	T	C	13078.2	REJECT	NS=2;DP=348;DPB=400.0;AC=4;AN=4;AF=1.0;RO=0;AO=400;PRO=0.0;PAO=0.0;QR=0;QA=15218;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=243;SRP=0.0;SAP=43.1608;AB=0.0;ABP=0.0;RUN=1;RPP=22.5536;RPPR=0.0;RPL=230.0;RPR=170.0;EPP=21.2724;EPPR=0.0;DPRA=0.0;ODDS=67.9719;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9925;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.7877;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.655;SOR=1.4245	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:101:0:0:102:3896:-350.692,-27.6448,0.0:101:100:101:0,101:4165,303,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:297:0:0:298:11322:-1017.98,-80.3072,0.0:297:100:297:0,297:12618,879,0:.:1:1:.:.:.:-0.00665809
chr21	36191308	.	T	C	14382.25	REJECT	NS=2;DP=382;DPB=432.0;AC=4;AN=4;AF=1.0;RO=1;AO=431;PRO=0.0;PAO=0.0;QR=40;QA=16393;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=220;SAR=211;SRP=5.18177;SAP=3.4184;AB=0.0;ABP=0.0;RUN=1;RPP=3.01534;RPPR=5.18177;RPL=215.0;RPR=216.0;EPP=7.24744;EPPR=5.18177;DPRA=0.0;ODDS=65.4086;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993039;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.699;Dels=0.0;FS=0.0;HaplotypeScore=3.9302;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.346;QD=31.885;ReadPosRankSum=0.73;SOR=0.48	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:0:0:98:3690:-332.13,-26.5316,0.0:96:100:96:0,95:3959,285,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:333:1:40:333:12703:-1138.55,-86.4592,0.0:332:100:333:1,332:14124,943,0:.:1:1:.:.:.:-0.00665809
chr21	36191365	.	A	G	14481.25	REJECT	NS=2;DP=382;DPB=428.0;AC=4;AN=4;AF=1.0;RO=0;AO=428;PRO=0.0;PAO=0.0;QR=0;QA=16287;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=220;SAR=208;SRP=0.0;SAP=3.74089;AB=0.0;ABP=0.0;RUN=1;RPP=5.03971;RPPR=0.0;RPL=224.0;RPR=204.0;EPP=3.74089;EPPR=0.0;DPRA=0.0;ODDS=61.6922;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992991;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9153;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.565;SOR=0.7575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.748:90:0:0:92:3447:-310.297,-24.9175,0.0:90:100:90:0,89:3668,267,0:1:.:1:.:.:.:-0.00365044	1/1:128.748:336:0:0:336:12840:-1154.86,-90.9759,0.0:336:100:336:0,336:14385,999,0:.:1:1:.:.:.:-0.00665809
chr21	36191646	.	G	C	11334.55	REJECT	NS=2;DP=301;DPB=348.0;AC=4;AN=4;AF=1.0;RO=0;AO=348;PRO=0.0;PAO=0.0;QR=0;QA=13221;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=149;SAR=199;SRP=0.0;SAP=18.61;AB=0.0;ABP=0.0;RUN=1;RPP=3.23494;RPPR=0.0;RPL=171.0;RPR=177.0;EPP=3.11014;EPPR=0.0;DPRA=0.0;ODDS=62.2847;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991379;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.9238;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.985;SOR=0.97	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.572:91:0:0:93:3492:-314.324,-25.1748,0.0:91:100:91:0,90:3608,269,0:1:.:1:.:.:.:-0.00365044	1/1:126.572:255:0:0:255:9729:-875.109,-69.0376,0.0:255:100:255:0,255:10860,753,0:.:1:1:.:.:.:-0.00665809
chr21	36192484	.	C	G	13725.8	REJECT	NS=2;DP=369;DPB=416.0;AC=4;AN=4;AF=1.0;RO=0;AO=416;PRO=0.0;PAO=0.0;QR=0;QA=15612;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=179;SAR=237;SRP=0.0;SAP=20.57;AB=0.0;ABP=0.0;RUN=1;RPP=3.19822;RPPR=0.0;RPL=211.0;RPR=205.0;EPP=15.0369;EPPR=0.0;DPRA=0.0;ODDS=62.2958;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995192;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7727;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.81;SOR=0.937	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:90:0:0:93:3489:-314.059,-25.1796,0.0:90:100:90:0,88:3607,264,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:322:0:0:323:12123:-1089.52,-86.5918,0.0:322:100:322:0,322:13516,942,0:.:1:1:.:.:.:-0.00665809
chr21	36192941	.	C	CA	489.2665	REJECT	NS=2;DP=130;DPB=186.611;AC=2;AN=4;AF=0.5;RO=78;AO=28;PRO=24.25;PAO=21.75;QR=2797;QA=974;PQR=817.417;PQA=700.917;SRF=62;SRR=16;SAF=20;SAR=8;SRP=61.9184;SAP=14.1779;AB=0.2;ABP=112.453;RUN=1;RPP=14.1779;RPPR=4.01252;RPL=8.0;RPR=20.0;EPP=7.97367;EPPR=3.12166;DPRA=0.0;ODDS=48.145;GTI=0;TYPE=ins;CIGAR=1M1I17M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.1125;FS=1.418;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=-0.2115;QD=4.96;RPA=12,13;RU=A;ReadPosRankSum=-1.2795;SOR=0.383;STR;ClippingRankSum=-0.19	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.4585:40:15:530:15:534:-43.0426,0.0,-42.1719:18:47:37:20,21:427,0,371:1:.:1:.:.:.:-0.00365044	0/1:116.4585:110:63:2267:13:440:-23.3222,0.0,-195.109:16:17:95:85,20:164,0,1765:.:1:1:.:.:.:-0.00665809
chr21	36192941	.	C	CAA	588.803	REJECT	NS=2;DP=140;DPB=186.611;AC=2;AN=2;AF=0.0;RO=78;AO=4;PRO=24.25;PAO=20.75;QR=2797;QA=130;PQR=817.417;PQA=660.917;SRF=62;SRR=16;SAF=1;SAR=3;SRP=61.9184;SAP=5.18177;AB=0.0285714;ABP=273.266;RUN=1;RPP=5.18177;RPPR=4.01252;RPL=3.0;RPR=1.0;EPP=3.0103;EPPR=3.12166;DPRA=0.0;ODDS=48.145;GTI=0;TYPE=ins;CIGAR=1M2I17M;NUMALT=3;MEANALT=9.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.917:39:15:530:3:95:-43.0426,-39.6338,-85.3186:3:9:34:.:.:1:.:.:.:-0.00365044	./1:133.917:101:63:2267:1:35:-23.3222,-33.2011,-231.545:1:1:86:.:.:1:.:.:.:-0.00665809
chr21	36192941	.	CA	C	588.803	REJECT	NS=2;DP=140;DPB=186.611;AC=2;AN=2;AF=0.0;RO=78;AO=10;PRO=24.25;PAO=17.25;QR=2797;QA=338;PQR=817.417;PQA=571.75;SRF=62;SRR=16;SAF=7;SAR=3;SRP=61.9184;SAP=6.48466;AB=0.0714286;ABP=226.362;RUN=1;RPP=6.48466;RPPR=4.01252;RPL=3.0;RPR=7.0;EPP=3.87889;EPPR=3.12166;DPRA=0.0;ODDS=48.145;GTI=0;TYPE=del;CIGAR=1M1D16M;NUMALT=3;MEANALT=9.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.987179;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.917:39:15:530:1:39:-43.0426,-45.7696,-109.834:1:3:34:.:.:1:.:.:.:-0.00365044	./1:133.917:101:63:2267:9:299:-23.3222,-19.4567,-278.33:9:10:86:.:.:1:.:.:.:-0.00665809
chr21	36193871	.	T	C	14729.2	REJECT	NS=2;DP=392;DPB=445.0;AC=4;AN=4;AF=1.0;RO=0;AO=444;PRO=0.0;PAO=0.0;QR=0;QA=16958;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=219;SAR=225;SRP=0.0;SAP=3.18637;AB=0.0;ABP=0.0;RUN=1;RPP=3.71456;RPPR=0.0;RPL=216.0;RPR=228.0;EPP=7.41193;EPPR=0.0;DPRA=0.0;ODDS=69.8508;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995495;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7901;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.32;SOR=0.8675	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:103:0:0:105:4045:-364.083,-28.4608,0.0:103:100:103:0,101:4232,303,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:339:0:0:339:12913:-1161.37,-91.7489,0.0:338:100:338:0,338:14280,987,0:.:1:1:.:.:.:-0.00665809
chr21	36194538	.	C	G	14944.9	REJECT	NS=2;DP=395;DPB=451.0;AC=4;AN=4;AF=1.0;RO=0;AO=451;PRO=0.0;PAO=0.0;QR=0;QA=17233;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=232;SAR=219;SRP=0.0;SAP=3.824;AB=0.0;ABP=0.0;RUN=1;RPP=3.13067;RPPR=0.0;RPL=228.0;RPR=223.0;EPP=3.59289;EPPR=0.0;DPRA=0.0;ODDS=72.3462;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.988914;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.195;SOR=0.802	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.9845:109:0:0:109:4207:-378.65,-29.5445,0.0:109:100:109:0,109:4351,327,0:1:.:1:.:.:.:-0.00365044	1/1:125.9845:341:0:0:342:13026:-1171.58,-92.5951,0.0:341:100:341:0,340:14460,1005,0:.:1:1:.:.:.:-0.00665809
chr21	36195727	.	GTTTTTTTTTTT	G	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=3;PRO=32.4639;PAO=30.4639;QR=0;QA=43;PQR=1174.48;PQA=1043.48;SRF=0;SRR=0;SAF=0;SAR=3;SRP=0.0;SAP=9.52472;AB=0.0769231;ABP=63.6445;RUN=1;RPP=9.52472;RPPR=0.0;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=del;CIGAR=1M11D28M;NUMALT=8;MEANALT=10.0;LEN=11;MQM=54.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:1:14:-7.02009,-6.30063,-8.92804:1:8:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:2:29:-3.92303,-1.67781,-10.3809:2:12:17:.:.:1:.:.:.:-0.00665809
chr21	36195727	.	GTTTTTTTTTTTT	G	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=3;AN=4;AF=0.5;RO=0;AO=15;PRO=32.4639;PAO=24.6306;QR=0;QA=275;PQR=1174.48;PQA=883.817;SRF=0;SRR=0;SAF=5;SAR=10;SRP=0.0;SAP=6.62942;AB=0.384615;ABP=7.52028;RUN=1;RPP=6.62942;RPPR=0.0;RPL=10.0;RPR=5.0;EPP=10.1038;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=del;CIGAR=1M12D27M;NUMALT=8;MEANALT=10.0;LEN=12;MQM=55.3333;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.123;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.12;MQRankSum=-0.102;QD=14.35;SOR=0.33;ClippingRankSum=-1.327	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:36.5034:17:0:0:6:108:-7.02009,0.0,-10.2391:14:73:17:1,22:758,53,0:1:.:1:.:.:.:-0.00365044	0/1:30.3156:27:0:0:9:167:-3.92303,0.0,-97.1713:9:53:17:.:.:.:.:1:.:.:.:-0.00665809
chr21	36195727	.	GTTTTTTTTTTTTT	G	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=4;PRO=32.4639;PAO=20.4639;QR=0;QA=46;PQR=1174.48;PQA=723.65;SRF=0;SRR=0;SAF=1;SAR=3;SRP=0.0;SAP=5.18177;AB=0.148148;ABP=32.0437;RUN=1;RPP=5.18177;RPPR=0.0;RPL=3.0;RPR=1.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=del;CIGAR=1M13D26M;NUMALT=8;MEANALT=14.0;LEN=13;MQM=55.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:0:0:-7.02009,-27.6376,-255.603:0:0:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:4:46:-3.92303,-37.8271,-491.115:4:24:17:.:.:1:.:.:.:-0.00665809
chr21	36195727	.	GTTTTTTTTTTTTTT	G	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=32.4639;PAO=16.4639;QR=0;QA=49;PQR=1174.48;PQA=583.936;SRF=0;SRR=0;SAF=1;SAR=1;SRP=0.0;SAP=3.0103;AB=0.166667;ABP=14.5915;RUN=1;RPP=3.0103;RPPR=0.0;RPL=1.0;RPR=1.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=del;CIGAR=1M14D25M;NUMALT=8;MEANALT=6.0;LEN=14;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:2:49:-7.02009,-35.1571,-386.401:2:17:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:0:0:-3.92303,-71.9471,-837.286:0:0:17:.:.:1:.:.:.:-0.00665809
chr21	36195731	.	TTTTTTTTTTTTT	A	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.4639;PAO=7.88889;QR=0;QA=15;PQR=1174.48;PQA=276.111;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=complex;CIGAR=1M12D3M1X23M;NUMALT=8;MEANALT=6.0;LEN=28;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:1:15:-7.02009,-71.8644,-803.281:1:8:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:0:0:-3.92303,-172.867,-2026.95:0:0:17:.:.:1:.:.:.:-0.00665809
chr21	36195746	.	TTTTTTTTTTTTCAGATGGA	CAGAGGGG	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.4639;PAO=18.7639;QR=0;QA=14;PQR=1174.48;PQA=675.95;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=0.0;RPR=1.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=complex;CIGAR=1M12D22M1X2M1X1M;NUMALT=8;MEANALT=6.0;LEN=28;MQM=58.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:1:14:-7.02009,-21.4927,-193.714:1:8:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:0:0:-3.92303,-51.8751,-566.642:0:0:17:.:.:1:.:.:.:-0.00665809
chr21	36195746	.	TTTTTTTTTTTTCAGATGGA	CAGATGGG	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=2;PRO=32.4639;PAO=18.7639;QR=0;QA=32;PQR=1174.48;PQA=675.95;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.0740741;ABP=45.5551;RUN=1;RPP=3.0103;RPPR=0.0;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=complex;CIGAR=1M12D25M1X1M;NUMALT=8;MEANALT=14.0;LEN=28;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:0:0:-7.02009,-22.4835,-194.961:0:0:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:2:32:-3.92303,-49.5354,-563.779:2:12:17:.:.:1:.:.:.:-0.00665809
chr21	36195747	.	TTTTTTTTTTTCAGATGGAG	AGATGGAA	51.9076	REJECT	NS=2;DP=39;DPB=90.575;AC=2;AN=2;AF=0.0;RO=0;AO=1;PRO=32.4639;PAO=22.0972;QR=0;QA=14;PQR=1174.48;PQA=800.617;SRF=0;SRR=0;SAF=1;SAR=0;SRP=0.0;SAP=5.18177;AB=0.0833333;ABP=21.1059;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=0.0;ODDS=4.59914;GTI=0;TYPE=complex;CIGAR=20M12D7M1X;NUMALT=8;MEANALT=6.0;LEN=28;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:20.0068:12:0:0:1:14:-7.02009,-20.6788,-183.982:1:8:12:.:.:1:.:.:.:-0.00365044	./1:30.3156:27:0:0:0:0:-3.92303,-44.5569,-475.469:0:0:17:.:.:1:.:.:.:-0.00665809
chr21	36198190	.	A	G	1584.4299999999998	REJECT	NS=2;DP=374;DPB=420.0;AC=2;AN=4;AF=0.5;RO=331;AO=89;PRO=0.0;PAO=0.0;QR=12686;QA=3431;PQR=0.0;PQA=0.0;SRF=169;SRR=162;SAF=40;SAR=49;SRP=3.33176;SAP=4.98658;AB=0.211905;ABP=305.796;RUN=1;RPP=7.13366;RPPR=3.8041;RPL=51.0;RPR=38.0;EPP=4.20583;EPPR=3.8041;DPRA=0.0;ODDS=193.811;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993958;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.463;Dels=0.0;FS=3.9065;HaplotypeScore=3.8994;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.038;QD=9.13;ReadPosRankSum=0.393;SOR=0.9125;ClippingRankSum=1.196	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:87:52:2001:38:1489:-109.646,0.0,-155.737:37:42:87:49,36:1310,0,1776:1:.:1:.:.:.:-0.00365044	0/1:129.501:329:279:10685:51:1942:-85.3096,0.0,-871.673:51:15:329:278,51:1189,0,10915:.:1:1:.:.:.:-0.00665809
chr21	36198900	.	AT	A	107.518	REJECT	SOMATIC;NS=2;DP=34;DPB=42.9615;AC=1;AN=4;AF=0.25;RO=18;AO=9;PRO=14.5;PAO=13.5;QR=641;QA=270;PQR=505.0;PQA=467.0;SRF=16;SRR=2;SAF=9;SAR=0;SRP=26.6552;SAP=22.5536;AB=0.296296;ABP=12.7417;RUN=1;RPP=9.04217;RPPR=3.49285;RPL=2.0;RPR=7.0;EPP=9.04217;EPPR=3.49285;DPRA=0.0;ODDS=2.98656;GTI=0;TYPE=del;CIGAR=1M1D24M;NUMALT=1;MEANALT=4.5;LEN=1;MQM=62.0;MQMR=58.8889;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.133;FS=2.738;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.195;QD=3.52;RPA=12,11;RU=T;ReadPosRankSum=-1.726;SOR=1.702;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:13.1843:7:4:140:1:16:0.0,-0.186277,-14.6889:1:20:5:.:.:.:.:0:.:.:.:-0.00365044	0/1:103.2585:28:14:501:8:254:-16.9359,0.0,-39.1775:8:33:24:19,8:143,0,392:.:1:1:.:.:.:-0.00665809
chr21	36200031	.	C	G	8982.5	REJECT	NS=2;DP=235;DPB=268.0;AC=4;AN=4;AF=1.0;RO=0;AO=268;PRO=0.0;PAO=0.0;QR=0;QA=10326;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=122;SAR=146;SRP=0.0;SAP=7.67735;AB=0.0;ABP=0.0;RUN=1;RPP=12.3768;RPPR=0.0;RPL=117.0;RPR=151.0;EPP=8.4876;EPPR=0.0;DPRA=0.0;ODDS=44.904;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.35;SOR=0.899	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:65:0:0:65:2494:-224.627,-17.6265,0.0:65:100:65:0,65:2751,195,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:203:0:0:203:7832:-704.581,-54.996,0.0:203:100:203:0,203:8760,605,0:.:1:1:.:.:.:-0.00665809
chr21	36202440	.	T	C	6703.205	REJECT	NS=2;DP=435;DPB=500.0;AC=2;AN=4;AF=0.5;RO=254;AO=245;PRO=0.0;PAO=0.0;QR=9767;QA=9282;PQR=0.0;PQA=0.0;SRF=135;SRR=119;SAF=119;SAR=126;SRP=5.19887;SAP=3.44459;AB=0.49;ABP=3.44459;RUN=1;RPP=3.09007;RPPR=3.0445;RPL=121.0;RPR=124.0;EPP=4.08274;EPPR=3.0103;DPRA=0.0;ODDS=420.175;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996063;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.759;Dels=0.0;FS=3.8215;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.092;QD=17.61;ReadPosRankSum=0.9705;SOR=0.6175;ClippingRankSum=1.118	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6175:126:63:2419:64:2433:-184.538,0.0,-183.291:63:50:126:63,62:2251,0,2290:1:.:1:.:.:.:-0.00365044	0/1:118.6175:371:191:7348:181:6849:-515.264,0.0,-560.166:181:49:371:190,181:6500,0,7062:.:1:1:.:.:.:-0.00665809
chr21	36202775	.	C	T	11514.5	REJECT	NS=2;DP=431;DPB=497.0;AC=2;AN=4;AF=0.5;RO=123;AO=374;PRO=0.0;PAO=0.0;QR=4806;QA=14380;PQR=0.0;PQA=0.0;SRF=68;SRR=55;SAF=190;SAR=184;SRP=5.99387;SAP=3.21932;AB=0.752515;ABP=278.272;RUN=1;RPP=3.59091;RPPR=3.45166;RPL=182.0;RPR=192.0;EPP=11.3943;EPPR=3.45166;DPRA=0.0;ODDS=190.788;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994652;PAIREDR=0.97561;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2495;Dels=0.0;FS=2.165;HaplotypeScore=1.9638;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.137;QD=24.76;ReadPosRankSum=0.432;SOR=0.59;ClippingRankSum=0.002	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:128:71:2771:60:2257:-167.609,0.0,-213.861:59:46:128:68,58:2021,0,2326:1:.:1:.:.:.:-0.00365044	0/1:129.501:365:52:2035:314:12123:-991.216,0.0,-83.8704:313:86:365:52,313:12464,0,1187:.:1:1:.:.:.:-0.00665809
chr21	36203846	.	G	A	5190.09	REJECT	NS=2;DP=369;DPB=424.0;AC=2;AN=4;AF=0.5;RO=231;AO=191;PRO=0.0;PAO=0.0;QR=8808;QA=7136;PQR=0.0;PQA=0.0;SRF=109;SRR=122;SAF=99;SAR=92;SRP=4.59895;SAP=3.56738;AB=0.450472;ABP=12.0444;RUN=1;RPP=3.93119;RPPR=5.12537;RPL=91.0;RPR=100.0;EPP=9.02448;EPPR=7.15584;DPRA=0.0;ODDS=271.929;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989529;PAIREDR=0.995671;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2535;Dels=0.0;FS=3.8925;HaplotypeScore=8.6782;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.854;QD=15.105;ReadPosRankSum=1.3035;SOR=0.872;ClippingRankSum=-0.47	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.3585:104:63:2418:44:1639:-118.54,0.0,-188.65:43:42:104:58,43:1449,0,2099:1:.:1:.:.:.:-0.00365044	0/1:117.3585:315:168:6390:147:5497:-409.166,0.0,-489.861:146:46:314:168,146:5199,0,6206:.:1:1:.:.:.:-0.00665809
chr21	36204381	.	A	AG	12854.900000000001	REJECT	NS=2;DP=367;DPB=521.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=16.0;PAO=25.0;QR=0;QA=14552;PQR=532.0;PQA=849.0;SRF=0;SRR=0;SAF=193;SAR=214;SRP=0.0;SAP=5.36317;AB=0.0;ABP=0.0;RUN=1;RPP=4.21075;RPPR=0.0;RPL=196.0;RPR=211.0;EPP=3.44246;EPPR=0.0;DPRA=0.0;ODDS=76.4937;GTI=0;TYPE=ins;CIGAR=1M1I4M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=36204381;HOMLEN=2;HOMSEQ=GG;SVLEN=1;SVTYPE=INS;BaseQRankSum=0.075;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.09;MQRankSum=-1.371;QD=27.515;RPA=2,3;RU=G;ReadPosRankSum=1.22;SOR=0.549;STR;ClippingRankSum=-0.798	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.017:113:0:0:110:3903:-369.866,-31.3457,0.0:114:99:115:58,146:4181,353,0:1:.:1:1:.:.:-0.00365044	1/1:129.017:311:0:0:297:10649:-967.649,-81.0385,0.0:306:100:306:152,401:12418,921,0:.:1:1:1:.:.:-0.00665809
chr21	36205590	.	T	A	455.542	REJECT	NS=2;DP=138;DPB=161.0;AC=2;AN=4;AF=0.5;RO=129;AO=32;PRO=0.0;PAO=0.0;QR=4717;QA=1184;PQR=0.0;PQA=0.0;SRF=102;SRR=27;SAF=28;SAR=4;SRP=97.6966;SAP=42.0968;AB=0.198758;ABP=129.913;RUN=1;RPP=20.3821;RPPR=11.915;RPL=8.0;RPR=24.0;EPP=30.1537;EPPR=26.0548;DPRA=0.0;ODDS=31.6764;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=45.6562;MQMR=59.2016;PAIRED=1.0;PAIREDR=0.984496;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.199;Dels=0.0;FS=8.8425;HaplotypeScore=3.9229;MLEAC=1;MLEAF=0.5;MQ=56.735;MQRankSum=-5.253;QD=6.825;ReadPosRankSum=0.165;SOR=1.792;ClippingRankSum=-1.33	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.655:44:29:1060:16:576:-38.4732,0.0,-83.0533:16:36:44:28,16:508,0,1039:1:.:1:.:.:.:-0.00365044	0/1:117.3585:116:100:3657:16:608:-20.7459,0.0,-297.295:16:14:116:100,16:347,0,3711:.:1:1:.:.:.:-0.00665809
chr21	36206142	.	C	G	8461.28	REJECT	NS=2;DP=388;DPB=439.0;AC=3;AN=4;AF=0.75;RO=138;AO=301;PRO=0.0;PAO=0.0;QR=5261;QA=11512;PQR=0.0;PQA=0.0;SRF=75;SRR=63;SAF=157;SAR=144;SRP=5.27618;SAP=4.2295;AB=0.591716;ABP=27.706;RUN=1;RPP=3.19065;RPPR=8.10854;RPL=148.0;RPR=153.0;EPP=5.61462;EPPR=3.26206;DPRA=0.0;ODDS=63.9904;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996678;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.113;Dels=0.0;FS=0.655;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.098;QD=26.94;ReadPosRankSum=0.289;SOR=0.7115	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3848:-346.367,-27.3647,0.0:100:100:100:0,100:4219,300,0:1:.:1:.:.:.:-0.00365044	0/1:129.501:338:138:5261:200:7664:-597.8,0.0,-381.659:200:59:338:138,200:7572,0,4874:.:1:1:.:.:.:-0.00665809
chr21	36206315	.	CGT	C	168.072	REJECT	SOMATIC;NS=2;DP=365;DPB=439.8;AC=1;AN=4;AF=0.25;RO=308;AO=36;PRO=87.0;PAO=72.0;QR=11580;QA=1209;PQR=3161.5;PQA=2598.5;SRF=147;SRR=161;SAF=18;SAR=18;SRP=4.39215;SAP=3.0103;AB=0.112676;ABP=373.078;RUN=1;RPP=3.25157;RPPR=7.07124;RPL=19.0;RPR=17.0;EPP=5.18177;EPPR=3.0385;DPRA=0.0;ODDS=18.1064;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=1;MEANALT=5.5;LEN=2;MQM=60.8333;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996753;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:78.6351:81:73:2726:4:128:0.0,-7.55152,-243.786:4:5:77:.:.:0:.:.:.:-0.00365044	0/1:160.002:284:235:8854:32:1081:-21.6695,0.0,-761.678:32:12:267:.:.:1:.:.:.:-0.00665809
chr21	36206932	.	G	A	13371.7	REJECT	NS=2;DP=360;DPB=411.0;AC=4;AN=4;AF=1.0;RO=0;AO=411;PRO=0.0;PAO=0.0;QR=0;QA=15363;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=194;SAR=217;SRP=0.0;SAP=5.80521;AB=0.0;ABP=0.0;RUN=1;RPP=5.80521;RPPR=0.0;RPL=217.0;RPR=194.0;EPP=6.31242;EPPR=0.0;DPRA=0.0;ODDS=65.806;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9927;MQMR=0.0;PAIRED=0.997567;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8679;MLEAC=2;MLEAF=1.0;MQ=59.985;QD=28.305;SOR=0.948	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3625:98:0:0:100:3699:-332.595,-26.7041,0.0:98:100:98:0,96:3823,288,0:1:.:1:.:.:.:-0.00365044	1/1:125.3625:310:0:0:311:11664:-1049.17,-84.1895,0.0:310:100:310:0,310:13005,915,0:.:1:1:.:.:.:-0.00665809
chr21	36208062	.	C	T	14296.7	REJECT	NS=2;DP=374;DPB=427.0;AC=4;AN=4;AF=1.0;RO=0;AO=427;PRO=0.0;PAO=0.0;QR=0;QA=16483;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=212;SAR=215;SRP=0.0;SAP=3.05607;AB=0.0;ABP=0.0;RUN=1;RPP=3.13744;RPPR=0.0;RPL=216.0;RPR=211.0;EPP=3.86974;EPPR=0.0;DPRA=0.0;ODDS=70.4957;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.992974;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=33.21;SOR=0.732	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:104:0:0:106:4094:-368.502,-28.7408,0.0:104:100:104:0,103:4303,310,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:321:0:0:321:12389:-1114.3,-86.9384,0.0:321:100:321:0,321:13837,954,0:.:1:1:.:.:.:-0.00665809
chr21	36208167	.	G	A	2307.95	REJECT	NS=2;DP=381;DPB=451.0;AC=2;AN=4;AF=0.5;RO=337;AO=114;PRO=0.0;PAO=0.0;QR=12922;QA=4241;PQR=0.0;PQA=0.0;SRF=163;SRR=174;SAF=57;SAR=57;SRP=3.78997;SAP=3.0103;AB=0.252772;ABP=242.445;RUN=1;RPP=5.75321;RPPR=4.87248;RPL=63.0;RPR=51.0;EPP=15.8868;EPPR=3.53223;DPRA=0.0;ODDS=162.787;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=0.997033;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.123;Dels=0.0;FS=2.072;HaplotypeScore=3.9661;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.4075;QD=9.435;ReadPosRankSum=-0.5255;SOR=0.8705;ClippingRankSum=0.46	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:135:70:2675:68:2494:-187.069,0.0,-203.342:66:49:135:67,65:2122,0,2272:1:.:1:.:.:.:-0.00365044	0/1:129.501:312:267:10247:46:1747:-72.3871,0.0,-836.902:46:15:312:266,46:1004,0,10479:.:1:1:.:.:.:-0.00665809
chr21	36209023	.	T	A	1614.65	REJECT	NS=2;DP=349;DPB=397.0;AC=2;AN=4;AF=0.5;RO=308;AO=89;PRO=0.0;PAO=0.0;QR=11719;QA=3345;PQR=0.0;PQA=0.0;SRF=152;SRR=156;SAF=37;SAR=52;SRP=3.1231;SAP=8.49998;AB=0.224181;ABP=265.343;RUN=1;RPP=3.22989;RPPR=15.4469;RPL=43.0;RPR=46.0;EPP=8.49998;EPPR=13.1908;DPRA=0.0;ODDS=210.617;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988764;PAIREDR=0.993506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6015;Dels=0.0;FS=5.624;HaplotypeScore=4.9239;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.603;QD=8.335;ReadPosRankSum=-0.733;SOR=0.895;ClippingRankSum=-1.331	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:59:2241:36:1315:-92.6528,0.0,-175.99:36:38:95:59,36:1183,0,2064:1:.:1:.:.:.:-0.00365044	0/1:129.501:302:249:9478:53:2030:-100.835,0.0,-770.726:53:18:302:249,53:1389,0,9669:.:1:1:.:.:.:-0.00665809
chr21	36211188	.	C	G	6730.39	REJECT	NS=2;DP=388;DPB=448.0;AC=2;AN=4;AF=0.5;RO=208;AO=239;PRO=0.0;PAO=0.0;QR=7929;QA=9073;PQR=0.0;PQA=0.0;SRF=89;SRR=119;SAF=108;SAR=131;SRP=12.4061;SAP=7.81661;AB=0.533482;ABP=7.37263;RUN=1;RPP=3.01939;RPPR=3.0103;RPL=120.0;RPR=119.0;EPP=3.74624;EPPR=4.05428;DPRA=0.0;ODDS=382.737;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995816;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5755;Dels=0.0;FS=1.668;HaplotypeScore=7.7988;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.502;QD=18.945;ReadPosRankSum=0.414;SOR=0.71;ClippingRankSum=1.388	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3565:118:58:2219:62:2314:-175.74,0.0,-167.204:61:51:118:57,60:2115,0,2045:1:.:1:.:.:.:-0.00365044	0/1:118.3565:328:150:5710:177:6759:-519.379,0.0,-425.044:177:54:327:150,177:6605,0,5394:.:1:1:.:.:.:-0.00665809
chr21	36212037	.	T	C	14021.5	REJECT	NS=2;DP=374;DPB=433.0;AC=4;AN=4;AF=1.0;RO=1;AO=432;PRO=0.0;PAO=0.0;QR=31;QA=16450;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=215;SAR=217;SRP=5.18177;SAP=3.03041;AB=0.0;ABP=0.0;RUN=1;RPP=4.2971;RPPR=5.18177;RPL=208.0;RPR=224.0;EPP=3.99551;EPPR=5.18177;DPRA=0.0;ODDS=76.6748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993056;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.535;Dels=0.0;FS=0.0;HaplotypeScore=4.8787;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.987;QD=27.16;ReadPosRankSum=0.855;SOR=0.471	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:114:0:0:116:4444:-399.94,-31.4244,0.0:114:100:114:0,113:4596,339,0:1:.:1:.:.:.:-0.00365044	1/1:129.501:316:1:31:316:12006:-1077.05,-83.0171,0.0:315:100:316:1,315:13337,897,0:.:1:1:.:.:.:-0.00665809
chr21	36212920	.	G	GC	11956.5	REJECT	NS=2;DP=328;DPB=513.667;AC=4;AN=4;AF=1.0;RO=0;AO=371;PRO=11.5;PAO=12.5;QR=0;QA=13592;PQR=336.0;PQA=370.0;SRF=0;SRR=0;SAF=213;SAR=158;SRP=0.0;SAP=20.7157;AB=0.0;ABP=0.0;RUN=1;RPP=5.12324;RPPR=0.0;RPL=176.0;RPR=195.0;EPP=3.15663;EPPR=0.0;DPRA=0.0;ODDS=70.858;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=3.0;LEN=1;MQM=60.0809;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=36212920;HOMLEN=1;HOMSEQ=C;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.295;QD=32.69;RPA=1,2;RU=C;SOR=0.942;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:106:3791:-344.202,-28.8982,0.0:112:100:112:52,135:4214,340,0:1:.:1:1:.:.:-0.00365044	1/1:129.501:275:0:0:265:9801:-881.573,-71.6665,0.0:278:100:278:135,370:11754,837,0:.:1:1:1:.:.:-0.00665809
chr21	36212920	.	G	GCTGCGGGAGCCACTGCCAAGTCTAGCTGTCAGGTTGGTCTCAGAGCTCTGTCTTGATCCCCACCAGGTCGCCCAGCCTGCGATCCCACCTGGC	.	PASS	SOMATIC;AC=1;AN=4;END=36212920;HOMLEN=0;SVLEN=93;SVTYPE=DUP:TANDEM;NTLEN=0	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.00365044	0/1:270,26:26:9:296:.:.:.:1:.:.:-0.00665809
chr21	36213879	.	T	C	4789.53	REJECT	NS=2;DP=324;DPB=362.0;AC=2;AN=4;AF=0.5;RO=190;AO=172;PRO=0.0;PAO=0.0;QR=7350;QA=6485;PQR=0.0;PQA=0.0;SRF=97;SRR=93;SAF=90;SAR=82;SRP=3.19316;SAP=3.81829;AB=0.475138;ABP=4.95383;RUN=1;RPP=7.10075;RPPR=6.71323;RPL=77.0;RPR=95.0;EPP=3.0608;EPPR=11.9705;DPRA=0.0;ODDS=233.19;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.3325;Dels=0.0;FS=1.9415;HaplotypeScore=9.7786;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3615;QD=16.865;ReadPosRankSum=0.601;SOR=0.821;ClippingRankSum=0.674	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.472:75:40:1529:35:1358:-101.944,0.0,-117.345:35:47:75:40,35:1297,0,1490:1:.:1:.:.:.:-0.00365044	0/1:124.472:286:150:5821:137:5127:-383.452,0.0,-445.874:137:48:286:149,137:4835,0,5628:.:1:1:.:.:.:-0.00665809
chr21	36213897	.	A	G	10087.7	REJECT	NS=2;DP=367;DPB=413.0;AC=2;AN=4;AF=0.5;RO=82;AO=331;PRO=0.0;PAO=0.0;QR=3132;QA=12543;PQR=0.0;PQA=0.0;SRF=44;SRR=38;SAF=178;SAR=153;SRP=3.96363;SAP=7.11051;AB=0.801453;ABP=328.999;RUN=1;RPP=8.52755;RPPR=15.8273;RPL=151.0;RPR=180.0;EPP=6.48072;EPPR=8.20065;DPRA=0.0;ODDS=88.6954;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996979;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4645;Dels=0.0;FS=1.0765;HaplotypeScore=10.7255;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.1245;QD=26.18;ReadPosRankSum=0.661;SOR=0.6865;ClippingRankSum=-1.394	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:91:44:1712:47:1772:-134.849,0.0,-129.459:47:52:91:44,47:1676,0,1648:1:.:1:.:.:.:-0.00365044	0/1:129.501:321:38:1420:284:10771:-881.599,0.0,-40.5782:283:88:321:38,283:11023,0,638:.:1:1:.:.:.:-0.00665809
chr21	36214789	.	C	CA	74.7447	REJECT;LowQual	NS=2;DP=32;DPB=104.789;AC=3;AN=4;AF=0.75;RO=5;AO=6;PRO=81.8333;PAO=80.8333;QR=174;QA=139;PQR=2936.67;PQA=2896.67;SRF=3;SRR=2;SAF=3;SAR=3;SRP=3.44459;SAP=3.0103;AB=0.166667;ABP=31.9633;RUN=1;RPP=4.45795;RPPR=6.91895;RPL=2.0;RPR=4.0;EPP=8.80089;EPPR=3.44459;DPRA=0.0;ODDS=1.5694;GTI=0;TYPE=ins;CIGAR=1M1I37M;NUMALT=2;MEANALT=11.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.508;FS=11.01;MLEAC=1;MLEAF=0.5;MQ=55.95;MQRankSum=0.955;QD=0.35;RPA=23,24;RU=A;ReadPosRankSum=-1.647;SOR=0.033;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:6.71047:2:0:0:1:14:-1.24688,-0.255615,0.0:1:100:1:.:.:.:.:1:.:.:.:-2.02563	0/1:66.3485:42:5:174:5:125:-10.1617,0.0,-18.5104:7:36:22:22,10:58,0,189:.:1:1:.:.:.:-1.99486
chr21	36214809	.	AAAATTAAATCAATC	TTAAATAAATA	74.7447	REJECT	SOMATIC;NS=2;DP=32;DPB=104.789;AC=1;AN=3;AF=0.0;RO=5;AO=2;PRO=81.8333;PAO=11.3333;QR=174;QA=32;PQR=2936.67;PQA=383.667;SRF=3;SRR=2;SAF=2;SAR=0;SRP=3.44459;SAP=7.35324;AB=0.0666667;ABP=51.9408;RUN=1;RPP=3.0103;RPPR=6.91895;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=3.44459;DPRA=15.0;ODDS=1.5694;GTI=0;TYPE=complex;CIGAR=1M4D25M1X3M1X3M;NUMALT=2;MEANALT=20.0;LEN=34;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.71047:2:0:0:0:0:-1.24688,-22.961,-262.462:0:0:1:.:.:.:.:.:.:-2.02563	./1:74.697:30:5:174:2:32:-10.1617,-62.2581,-657.41:2:17:12:.:.:1:.:.:.:-1.99486
chr21	36215354	.	G	A	54.4061	REJECT	SOMATIC;NS=2;DP=24;DPB=24.0;AC=1;AN=4;AF=0.25;RO=20;AO=4;PRO=0.0;PAO=0.0;QR=733;QA=150;PQR=0.0;PQA=0.0;SRF=13;SRR=7;SAF=1;SAR=3;SRP=6.91895;SAP=5.18177;AB=0.235294;ABP=13.3567;RUN=1;RPP=3.0103;RPPR=3.0103;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=13.8677;DPRA=2.42857;ODDS=5.41505;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.85;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.061;Dels=0.0;FS=11.994;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.152;QD=5.8;ReadPosRankSum=0.424;SOR=1.405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:23.5366:7:7:256:0:0:0.0,-1.92576,-23.3884:0:0:7:.:.:.:.:0:.:.:.:-2.02563	0/1:76.70305:16:13:477:4:150:-8.94383,0.0,-38.5425:4:24:16:12,4:121,0,446:.:1:1:.:.:.:-1.99486
chr21	36215976	.	G	C	3672.63	REJECT	NS=2;DP=321;DPB=369.0;AC=2;AN=4;AF=0.5;RO=195;AO=172;PRO=0.0;PAO=0.0;QR=7408;QA=5539;PQR=0.0;PQA=0.0;SRF=90;SRR=105;SAF=92;SAR=80;SRP=5.51585;SAP=4.82828;AB=0.466125;ABP=6.68827;RUN=1;RPP=3.2123;RPPR=3.28869;RPL=88.0;RPR=84.0;EPP=10.2822;EPPR=5.51585;DPRA=0.0;ODDS=255.403;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994186;PAIREDR=0.989744;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-3.372;Dels=0.01;FS=1.0815;HaplotypeScore=30.6054;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.55;QD=13.36;ReadPosRankSum=-0.7505;SOR=0.689;ClippingRankSum=0.883	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:50:1939:47:1535:-111.894,0.0,-148.775:45:47:95:50,44:1361,0,1865:1:.:1:.:.:.:-0.0106314	0/1:129.501:271:145:5469:125:4004:-287.131,0.0,-419.205:125:46:269:144,125:3452,0,5343:.:1:1:.:.:.:-0.197241
chr21	36216281	.	A	G	5496.955	REJECT	NS=2;DP=372;DPB=418.0;AC=2;AN=4;AF=0.5;RO=223;AO=195;PRO=0.0;PAO=0.0;QR=8562;QA=7469;PQR=0.0;PQA=0.0;SRF=106;SRR=117;SAF=95;SAR=100;SRP=4.18854;SAP=3.28869;AB=0.466507;ABP=7.08311;RUN=1;RPP=3.11052;RPPR=3.48744;RPL=96.0;RPR=99.0;EPP=7.92117;EPPR=3.25374;DPRA=0.0;ODDS=281.663;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9179;MQMR=60.0;PAIRED=0.994872;PAIREDR=0.991031;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.017;Dels=0.0;FS=0.6155;HaplotypeScore=5.8559;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.0075;QD=16.58;ReadPosRankSum=0.4235;SOR=0.608;ClippingRankSum=-1.002	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:86:47:1812:42:1629:-122.514,0.0,-138.994:40:46:86:46,38:1403,0,1700:1:.:1:.:.:.:-0.0106314	0/1:129.501:327:176:6750:153:5840:-436.159,0.0,-518.047:152:47:327:174,152:5501,0,6505:.:1:1:.:.:.:-0.197241
chr21	36216883	.	ATGAG	A	4197.59	REJECT	NS=2;DP=288;DPB=297.0;AC=2;AN=4;AF=0.5;RO=145;AO=160;PRO=42.5;PAO=31.5;QR=5442;QA=5691;PQR=1392.0;PQA=1023.0;SRF=73;SRR=72;SAF=86;SAR=74;SRP=3.02528;SAP=4.96463;AB=0.512821;ABP=3.45573;RUN=1;RPP=9.579;RPPR=8.41652;RPL=69.0;RPR=91.0;EPP=3.06459;EPPR=4.82236;DPRA=0.0;ODDS=191.007;GTI=0;TYPE=del;CIGAR=1M4D9M;NUMALT=1;MEANALT=4.5;LEN=4;MQM=61.6875;MQMR=60.0;PAIRED=0.9875;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=36216887;HOMLEN=11;HOMSEQ=TGAGTGAGTGA;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=1.0875;FS=1.802;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=-0.228;QD=17.065;RPA=3,2;RU=TGAG;ReadPosRankSum=-1.0495;SOR=0.744;STR;ClippingRankSum=-1.774	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:35:1288:33:1142:-83.3151,0.0,-107.843:36:49:76:42,45:1345,0,1929:1:.:1:1:.:.:-0.0106314	0/1:129.501:252:110:4154:127:4549:-343.202,0.0,-329.571:127:54:238:123,161:6845,0,6168:.:1:1:1:.:.:-0.197241
chr21	36217802	.	C	T	6408.77	REJECT	NS=2;DP=403;DPB=456.0;AC=2;AN=4;AF=0.5;RO=232;AO=223;PRO=0.0;PAO=0.0;QR=8927;QA=8582;PQR=0.0;PQA=0.0;SRF=110;SRR=122;SAF=95;SAR=128;SRP=4.35811;SAP=13.6145;AB=0.489035;ABP=3.4865;RUN=1;RPP=9.09627;RPPR=5.40641;RPL=124.0;RPR=99.0;EPP=3.48744;EPPR=12.5947;DPRA=0.0;ODDS=295.584;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99569;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.7735;Dels=0.0;FS=4.7525;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3155;QD=17.37;ReadPosRankSum=-0.137;SOR=0.791;ClippingRankSum=0.563	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.472:103:59:2272:46:1748:-128.874,0.0,-176.046:46:45:103:55,46:1638,0,1985:1:.:1:.:.:.:-0.0106314	0/1:119.472:350:173:6655:177:6834:-519.836,0.0,-503.773:177:51:350:173,177:6607,0,6430:.:1:1:.:.:.:-0.197241
chr21	36218264	.	A	G	6223.51	REJECT	NS=2;DP=376;DPB=440.0;AC=2;AN=4;AF=0.5;RO=216;AO=224;PRO=0.0;PAO=0.0;QR=8292;QA=8496;PQR=0.0;PQA=0.0;SRF=101;SRR=115;SAF=122;SAR=102;SRP=4.98071;SAP=6.88793;AB=0.509091;ABP=3.32615;RUN=1;RPP=3.04908;RPPR=9.8062;RPL=111.0;RPR=113.0;EPP=3.04908;EPPR=7.03155;DPRA=0.0;ODDS=383.344;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.99537;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.505;Dels=0.0;FS=5.3895;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7115;QD=17.585;ReadPosRankSum=-0.483;SOR=0.815;ClippingRankSum=-0.281	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.389:126:67:2524:59:2237:-167.195,0.0,-193.014:59:47:126:66,60:2020,0,2314:1:.:1:.:.:.:-0.0106314	0/1:118.389:313:149:5768:165:6259:-477.947,0.0,-433.739:165:53:313:148,165:6089,0,5478:.:1:1:.:.:.:-0.197241
chr21	36218373	.	T	C	12527.7	REJECT	NS=2;DP=335;DPB=386.0;AC=4;AN=4;AF=1.0;RO=0;AO=386;PRO=0.0;PAO=0.0;QR=0;QA=14603;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=192;SAR=194;SRP=0.0;SAP=3.0328;AB=0.0;ABP=0.0;RUN=1;RPP=26.0527;RPPR=0.0;RPL=225.0;RPR=161.0;EPP=7.42075;EPPR=0.0;DPRA=0.0;ODDS=67.3464;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994819;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.8239;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.44;SOR=0.796	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:101:3858:-347.272,-27.3731,0.0:100:100:100:0,100:3872,300,0:1:.:1:.:.:.:-0.0106314	1/1:129.501:285:0:0:285:10745:-966.512,-77.1531,0.0:285:100:285:0,285:12015,843,0:.:1:1:.:.:.:-0.197241
chr21	36218449	.	A	C	10913.05	REJECT	NS=2;DP=326;DPB=373.0;AC=4;AN=4;AF=1.0;RO=2;AO=364;PRO=0.0;PAO=0.0;QR=43;QA=13083;PQR=0.0;PQA=0.0;SRF=0;SRR=2;SAF=123;SAR=241;SRP=7.35324;SAP=86.0751;AB=0.0;ABP=0.0;RUN=1;RPP=80.539;RPPR=7.35324;RPL=239.0;RPR=125.0;EPP=77.8426;EPPR=7.35324;DPRA=0.0;ODDS=60.67;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986264;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.872;Dels=0.0;FS=0.0;HaplotypeScore=58.1273;MLEAC=2;MLEAF=1.0;MQ=59.97;MQRankSum=-1.719;QD=33.59;ReadPosRankSum=2.386;SOR=0.9635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:92:3347:-300.844,-24.4736,0.0:88:100:88:0,84:3455,251,0:1:.:1:.:.:.:-0.0106314	1/1:129.501:280:2:43:272:9736:-871.594,-70.0073,0.0:271:99:273:2,270:10392,700,0:.:1:1:.:.:.:-0.197241
chr21	36218491	.	C	T	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=11;PRO=41.1516;PAO=26.8;QR=636;QA=188;PQR=1453.55;PQA=811.3;SRF=6;SRR=12;SAF=0;SAR=11;SRP=7.35324;SAP=26.8965;AB=0.080292;ABP=212.629;RUN=1;RPP=7.94546;RPPR=4.9405;RPL=8.0;RPR=3.0;EPP=7.94546;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=snp;CIGAR=1X30M;NUMALT=9;MEANALT=26.0;LEN=1;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:7:144:-15.5549,-77.1296,-858.222:7:23:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:4:44:-39.2161,-254.695,-2682.42:4:6:62:.:.:1:.:.:.:-0.197241
chr21	36218491	.	C	CT	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=11;PRO=41.1516;PAO=38.6516;QR=636;QA=300;PQR=1453.55;PQA=1303.05;SRF=6;SRR=12;SAF=6;SAR=5;SRP=7.35324;SAP=3.20771;AB=0.080292;ABP=212.629;RUN=1;RPP=3.20771;RPPR=4.9405;RPL=5.0;RPR=6.0;EPP=3.20771;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=ins;CIGAR=1M1I30M;NUMALT=9;MEANALT=26.0;LEN=1;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:6:179:-15.5549,-3.50426,-28.5473:6:20:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:5:121:-39.2161,-33.3061,-102.535:5:8:62:.:.:1:.:.:.:-0.197241
chr21	36218491	.	CT	C	474.8085	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=4;AF=0.5;RO=18;AO=19;PRO=41.1516;PAO=36.5183;QR=636;QA=517;PQR=1453.55;PQA=1289.31;SRF=6;SRR=12;SAF=9;SAR=10;SRP=7.35324;SAP=3.12459;AB=0.138686;ABP=158.358;RUN=1;RPP=8.61041;RPPR=4.9405;RPL=6.0;RPR=13.0;EPP=4.03889;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=9;MEANALT=26.0;LEN=1;MQM=58.8421;MQMR=58.9444;PAIRED=0.947368;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.3355;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.53;MQRankSum=0.3;QD=2.31;RPA=21,20;RU=T;ReadPosRankSum=-0.2085;SOR=0.7105;STR;ClippingRankSum=0.365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:69.3342:30:4:147:2:54:-15.5549,0.0,-53.7594:5:24:26:13,9:91,0,113:1:.:1:.:.:.:-0.0106314	0/1:115.603:157:14:489:17:463:-39.2161,0.0,-179.748:41:38:96:65,65:491,0,619:.:1:1:.:.:.:-0.197241
chr21	36218491	.	CTT	C	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=12;PRO=41.1516;PAO=36.6611;QR=636;QA=278;PQR=1453.55;PQA=1260.88;SRF=6;SRR=12;SAF=3;SAR=9;SRP=7.35324;SAP=9.52472;AB=0.0875912;ABP=205.401;RUN=1;RPP=5.9056;RPPR=4.9405;RPL=8.0;RPR=4.0;EPP=3.73412;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=del;CIGAR=1M2D28M;NUMALT=9;MEANALT=26.0;LEN=2;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:3:65:-15.5549,-15.4013,-92.306:3:10:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:9:213:-39.2161,-42.1963,-333.537:9:15:62:.:.:1:.:.:.:-0.197241
chr21	36218491	.	CTTT	C	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=41.1516;PAO=32.5111;QR=636;QA=44;PQR=1453.55;PQA=1147.83;SRF=6;SRR=12;SAF=0;SAR=3;SRP=7.35324;SAP=9.52472;AB=0.0218978;ABP=275.015;RUN=1;RPP=3.73412;RPPR=4.9405;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=del;CIGAR=1M3D27M;NUMALT=9;MEANALT=26.0;LEN=3;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:2:29:-15.5549,-22.7008,-120.584:2:7:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:1:15:-39.2161,-74.9059,-515.27:1:2:62:.:.:1:.:.:.:-0.197241
chr21	36218512	.	TCAAATG	CAAATT	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=6;PRO=41.1516;PAO=17.4516;QR=636;QA=114;PQR=1453.55;PQA=616.845;SRF=6;SRR=12;SAF=6;SAR=0;SRP=7.35324;SAP=16.0391;AB=0.0606061;ABP=169.029;RUN=1;RPP=4.45795;RPPR=4.9405;RPL=2.0;RPR=4.0;EPP=4.45795;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=complex;CIGAR=1M1D25M1X3M;NUMALT=9;MEANALT=36.0;LEN=30;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:0:0:-15.5549,-61.2404,-731.202:0:0:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:6:114:-39.2161,-156.251,-1702.7:6:10:62:.:.:1:.:.:.:-0.197241
chr21	36218513	.	CAAATG	TCAAATT	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=3;PRO=41.1516;PAO=16.2516;QR=636;QA=59;PQR=1453.55;PQA=575.245;SRF=6;SRR=12;SAF=3;SAR=0;SRP=7.35324;SAP=9.52472;AB=0.0218978;ABP=275.015;RUN=1;RPP=3.73412;RPPR=4.9405;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=complex;CIGAR=1M1I26M1X3M;NUMALT=9;MEANALT=26.0;LEN=32;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:2:43:-15.5549,-71.5842,-713.37:2:7:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:1:16:-39.2161,-173.48,-1616.67:1:2:62:.:.:1:.:.:.:-0.197241
chr21	36218513	.	CAAATG	TTCAAATT	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=2;PRO=41.1516;PAO=16.2516;QR=636;QA=43;PQR=1453.55;PQA=575.245;SRF=6;SRR=12;SAF=2;SAR=0;SRP=7.35324;SAP=7.35324;AB=0.0526316;ABP=69.0688;RUN=1;RPP=3.0103;RPPR=4.9405;RPL=1.0;RPR=1.0;EPP=3.0103;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=complex;CIGAR=1M2I26M1X3M;NUMALT=9;MEANALT=16.0;LEN=33;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:2:43:-15.5549,-71.5842,-713.37:2:7:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:0:0:-39.2161,-174.65,-1618.1:0:0:62:.:.:1:.:.:.:-0.197241
chr21	36218518	.	G	T	495.887	REJECT	NS=2;DP=137;DPB=244.258;AC=2;AN=2;AF=0.0;RO=18;AO=7;PRO=41.1516;PAO=19.7516;QR=636;QA=123;PQR=1453.55;PQA=696.745;SRF=6;SRR=12;SAF=7;SAR=0;SRP=7.35324;SAP=18.2106;AB=0.0510949;ABP=242.807;RUN=1;RPP=18.2106;RPPR=4.9405;RPL=0.0;RPR=7.0;EPP=18.2106;EPPR=4.9405;DPRA=0.0;ODDS=10.976;GTI=0;TYPE=snp;CIGAR=27M1X3M;NUMALT=9;MEANALT=26.0;LEN=1;MQM=60.0;MQMR=58.9444;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.6684:38:4:147:2:32:-15.5549,-71.4908,-701.763:2:7:30:.:.:1:.:.:.:-0.0106314	./1:132.206:99:14:489:5:91:-39.2161,-165.103,-1579.18:5:8:62:.:.:1:.:.:.:-0.197241
chr21	36218774	.	C	A	6037.72	REJECT	NS=2;DP=351;DPB=400.0;AC=2;AN=4;AF=0.5;RO=181;AO=217;PRO=0.0;PAO=0.0;QR=6690;QA=8052;PQR=0.0;PQA=0.0;SRF=80;SRR=101;SAF=111;SAR=106;SRP=8.30101;SAP=3.26047;AB=0.5425;ABP=9.28586;RUN=1;RPP=13.9077;RPPR=3.59816;RPL=92.0;RPR=125.0;EPP=13.9077;EPPR=10.5085;DPRA=0.0;ODDS=289.557;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995392;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.511;Dels=0.0;FS=4.516;HaplotypeScore=5.8321;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0395;QD=18.395;ReadPosRankSum=0.006;SOR=0.5355;ClippingRankSum=-1.103	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.481:94:46:1692:50:1828:-138.562,0.0,-126.325:49:53:93:42,49:1571,0,1422:1:.:1:.:.:.:-0.0106314	0/1:118.481:302:135:4998:167:6224:-478.109,0.0,-368.212:166:55:301:135,166:6020,0,4663:.:1:1:.:.:.:-0.197241
chr21	36218903	.	A	AG	10911.45	REJECT	NS=2;DP=301;DPB=477.667;AC=4;AN=4;AF=1.0;RO=0;AO=346;PRO=9.0;PAO=13.0;QR=0;QA=12597;PQR=215.0;PQA=369.0;SRF=0;SRR=0;SAF=188;SAR=158;SRP=0.0;SAP=8.65864;AB=0.0;ABP=0.0;RUN=1;RPP=17.47;RPPR=0.0;RPL=197.0;RPR=149.0;EPP=7.93063;EPPR=0.0;DPRA=0.0;ODDS=71.5762;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=36218903;HOMLEN=1;HOMSEQ=G;SVLEN=1;SVTYPE=INS;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.065;QD=26.995;RPA=1,2;RU=G;SOR=0.875;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:109:0:0:108:3902:-351.187,-29.2101,0.0:110:100:110:56,153:4146,334,0:1:.:1:1:.:.:-0.0106314	1/1:129.501:247:0:0:238:8695:-795.939,-65.4036,0.0:248:100:248:120,337:10455,745,0:.:1:1:1:.:.:-0.197241
chr21	36219317	.	A	G	5012.65	REJECT	NS=2;DP=332;DPB=382.0;AC=2;AN=4;AF=0.5;RO=197;AO=185;PRO=0.0;PAO=0.0;QR=7546;QA=7070;PQR=0.0;PQA=0.0;SRF=105;SRR=92;SAF=100;SAR=85;SRP=4.87314;SAP=5.65128;AB=0.484293;ABP=3.82887;RUN=1;RPP=3.30374;RPPR=3.28587;RPL=90.0;RPR=95.0;EPP=5.65128;EPPR=3.55041;DPRA=0.0;ODDS=313.509;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994924;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8285;Dels=0.0;FS=0.218;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.7455;QD=16.94;ReadPosRankSum=-0.8675;SOR=0.72;ClippingRankSum=0.334	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:47:1818:53:2020:-154.722,0.0,-136.547:52:52:99:47,51:1692,0,1709:1:.:1:.:.:.:-0.0106314	0/1:129.501:282:150:5728:132:5050:-377.883,0.0,-438.844:132:47:282:150,132:4793,0,5515:.:1:1:.:.:.:-0.197241
chr21	36219566	.	A	G	6389.58	REJECT	NS=2;DP=422;DPB=481.0;AC=2;AN=4;AF=0.5;RO=245;AO=235;PRO=0.0;PAO=0.0;QR=9531;QA=8968;PQR=0.0;PQA=0.0;SRF=127;SRR=118;SAF=118;SAR=117;SRP=3.72822;SAP=3.01954;AB=0.488565;ABP=3.55655;RUN=1;RPP=3.24131;RPPR=4.50817;RPL=115.0;RPR=120.0;EPP=3.01954;EPPR=3.23188;DPRA=0.0;ODDS=317.63;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991489;PAIREDR=0.995918;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.191;Dels=0.0;FS=0.3965;HaplotypeScore=11.6388;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.177;QD=18.51;ReadPosRankSum=0.914;SOR=0.688;ClippingRankSum=-1.422	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:49:1883:67:2525:-195.825,0.0,-138.035:65:58:112:44,64:2265,0,1465:1:.:1:.:.:.:-0.0106314	0/1:129.501:364:196:7648:168:6443:-480.891,0.0,-589.256:168:46:363:195,168:6102,0,7438:.:1:1:.:.:.:-0.197241
chr21	36219716	.	T	G	4587.125	REJECT	NS=2;DP=321;DPB=363.0;AC=2;AN=4;AF=0.5;RO=194;AO=169;PRO=0.0;PAO=0.0;QR=7402;QA=6372;PQR=0.0;PQA=0.0;SRF=72;SRR=122;SAF=66;SAR=103;SRP=30.9932;SAP=20.6005;AB=0.465565;ABP=6.74906;RUN=1;RPP=3.33152;RPPR=3.05507;RPL=87.0;RPR=82.0;EPP=3.6399;EPPR=3.05507;DPRA=0.0;ODDS=267.917;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.1395;Dels=0.0;FS=0.2275;HaplotypeScore=3.882;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.099;QD=16.65;ReadPosRankSum=0.4505;SOR=0.615;ClippingRankSum=-0.649	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:84:42:1598:42:1554:-117.147,0.0,-121.123:42:50:84:42,42:1470,0,1378:1:.:1:.:.:.:-0.0106314	0/1:129.501:279:152:5804:127:4818:-357.798,0.0,-446.546:127:46:279:152,127:4531,0,5698:.:1:1:.:.:.:-0.197241
chr21	36219771	.	CAAT	C	3491.83	REJECT	NS=2;DP=286;DPB=289.556;AC=2;AN=4;AF=0.5;RO=167;AO=139;PRO=38.0;PAO=24.0;QR=6214;QA=4924;PQR=1285.5;PQA=816.5;SRF=75;SRR=92;SAF=56;SAR=83;SRP=6.76812;SAP=14.3988;AB=0.451299;ABP=9.35551;RUN=1;RPP=3.1509;RPPR=5.20778;RPL=68.0;RPR=71.0;EPP=5.65044;EPPR=3.64744;DPRA=0.0;ODDS=214.15;GTI=0;TYPE=del;CIGAR=1M3D5M;NUMALT=1;MEANALT=2.0;LEN=3;MQM=60.2878;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=36219774;HOMLEN=4;HOMSEQ=AATA;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=1.1545;FS=1.4795;MLEAC=1;MLEAF=0.5;MQ=60.125;MQRankSum=0.798;QD=19.495;RPA=2,1;RU=AAT;ReadPosRankSum=0.444;SOR=0.8305;STR;ClippingRankSum=-0.355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:76:34:1231:42:1445:-109.243,0.0,-93.5411:44:57:77:34,54:1728,0,1378:1:.:1:1:.:.:-0.0106314	0/1:129.501:248:133:4983:97:3479:-247.166,0.0,-421.217:97:42:237:143,128:4906,0,7319:.:1:1:1:.:.:-0.197241
chr21	36220206	.	C	T	5732.700000000001	REJECT	NS=2;DP=421;DPB=480.0;AC=2;AN=4;AF=0.5;RO=261;AO=219;PRO=0.0;PAO=0.0;QR=9695;QA=8107;PQR=0.0;PQA=0.0;SRF=131;SRR=130;SAF=96;SAR=123;SRP=3.01862;SAP=10.2386;AB=0.45625;ABP=10.9905;RUN=1;RPP=18.0916;RPPR=8.21019;RPL=129.0;RPR=90.0;EPP=4.21006;EPPR=3.68421;DPRA=0.0;ODDS=365.015;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2374;MQMR=60.1149;PAIRED=0.990868;PAIREDR=0.996169;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4575;Dels=0.0;FS=4.33;HaplotypeScore=147.445;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=-0.7935;QD=16.47;ReadPosRankSum=-0.6815;SOR=0.982;ClippingRankSum=0.33	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:115:60:2249:57:2133:-160.282,0.0,-170.724:56:49:115:58,55:2038,0,1950:1:.:1:.:.:.:-0.0106314	0/1:129.501:363:201:7446:162:5974:-439.138,0.0,-571.495:162:45:363:201,162:5584,0,7194:.:1:1:.:.:.:-0.197241
chr21	36220214	.	C	CT	2650.5	REJECT	NS=2;DP=310;DPB=438.138;AC=2;AN=4;AF=0.5;RO=167;AO=94;PRO=135.5;PAO=122.5;QR=6245;QA=3113;PQR=4852.5;PQA=4305.5;SRF=81;SRR=86;SAF=37;SAR=57;SRP=3.33537;SAP=12.2506;AB=0.303226;ABP=107.269;RUN=1;RPP=14.1911;RPPR=12.4894;RPL=58.0;RPR=36.0;EPP=6.33681;EPPR=17.1704;DPRA=0.0;ODDS=170.693;GTI=0;TYPE=ins;CIGAR=1M1I28M;NUMALT=1;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989362;PAIREDR=0.994012;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.7435;FS=5.999;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=-1.088;QD=6.055;RPA=10,11;RU=T;ReadPosRankSum=0.6655;SOR=0.914;STR;ClippingRankSum=1.747	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.019:89:40:1502:27:891:-76.0818,0.0,-139.573:31:38:83:64,36:656,0,3245:1:.:1:.:.:.:-0.0106314	0/1:116.019:294:127:4743:67:2222:-228.971,0.0,-496.654:95:37:254:191,124:2367,0,4448:.:1:1:.:.:.:-0.197241
chr21	36220493	.	G	A	5727.4	REJECT	NS=2;DP=359;DPB=414.0;AC=2;AN=4;AF=0.5;RO=208;AO=205;PRO=0.0;PAO=0.0;QR=8000;QA=7843;PQR=0.0;PQA=0.0;SRF=111;SRR=97;SAF=114;SAR=91;SRP=5.0565;SAP=8.61376;AB=0.495169;ABP=3.09422;RUN=1;RPP=3.52933;RPPR=3.05206;RPL=106.0;RPR=99.0;EPP=6.07155;EPPR=3.67845;DPRA=0.0;ODDS=350.921;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995122;PAIREDR=0.995192;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0095;Dels=0.0;FS=6.43;HaplotypeScore=5.8964;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.166;QD=17.375;ReadPosRankSum=0.543;SOR=0.9945;ClippingRankSum=1.608	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.311:108:56:2159:53:2019:-152.179,0.0,-164.779:52:48:108:56,52:1813,0,2019:1:.:1:.:.:.:-0.0106314	0/1:120.311:304:152:5841:152:5824:-441.503,0.0,-443.051:152:50:303:151,152:5616,0,5598:.:1:1:.:.:.:-0.197241
chr21	36220679	.	T	C	6171.895	REJECT	NS=2;DP=357;DPB=404.0;AC=2;AN=4;AF=0.5;RO=188;AO=216;PRO=0.0;PAO=0.0;QR=7239;QA=8289;PQR=0.0;PQA=0.0;SRF=78;SRR=110;SAF=86;SAR=130;SRP=14.8379;SAP=22.4731;AB=0.534653;ABP=7.22425;RUN=1;RPP=5.5839;RPPR=6.75262;RPL=116.0;RPR=100.0;EPP=4.45795;EPPR=3.0565;DPRA=0.0;ODDS=264.357;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.986111;PAIREDR=0.994681;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.967;Dels=0.0;FS=1.651;HaplotypeScore=5.8991;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3335;QD=19.505;ReadPosRankSum=0.418;SOR=0.715;ClippingRankSum=0.092	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.179:91:41:1564:50:1927:-148.814,0.0,-116.126:50:55:91:41,50:1804,0,1470:1:.:1:.:.:.:-0.0106314	0/1:118.179:312:147:5675:166:6362:-487.438,0.0,-425.67:165:53:312:147,164:6094,0,5446:.:1:1:.:.:.:-0.197241
chr21	36220720	.	A	C	4741.65	REJECT	NS=2;DP=283;DPB=327.0;AC=2;AN=4;AF=0.5;RO=157;AO=170;PRO=0.0;PAO=0.0;QR=6030;QA=6450;PQR=0.0;PQA=0.0;SRF=63;SRR=94;SAF=59;SAR=111;SRP=16.3019;SAP=37.5495;AB=0.519878;ABP=4.13256;RUN=1;RPP=21.455;RPPR=10.3269;RPL=104.0;RPR=66.0;EPP=6.28028;EPPR=3.68802;DPRA=0.0;ODDS=264.192;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.982353;PAIREDR=0.993631;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.456;Dels=0.0;FS=11.2195;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.53;QD=17.685;ReadPosRankSum=0.4515;SOR=0.838;ClippingRankSum=0.277	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:85:43:1644:42:1532:-114.898,0.0,-125.004:42:49:85:43,42:1376,0,1545:1:.:1:.:.:.:-0.0106314	0/1:129.501:241:114:4386:128:4918:-376.862,0.0,-328.981:127:53:241:114,126:4710,0,4175:.:1:1:.:.:.:-0.197241
chr21	36220771	.	A	G	2918.9849999999997	REJECT	NS=2;DP=182;DPB=216.0;AC=2;AN=4;AF=0.5;RO=109;AO=107;PRO=0.0;PAO=0.0;QR=4191;QA=4115;PQR=0.0;PQA=0.0;SRF=32;SRR=77;SAF=28;SAR=79;SRP=43.3519;SAP=55.7953;AB=0.49537;ABP=3.05051;RUN=1;RPP=10.3365;RPPR=15.4614;RPL=63.0;RPR=44.0;EPP=8.8753;EPPR=3.98647;DPRA=0.0;ODDS=189.697;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3315;Dels=0.0;FS=2.717;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.28;QD=17.2;ReadPosRankSum=-0.343;SOR=0.7815;ClippingRankSum=1.093	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:68:38:1469:30:1152:-85.3,0.0,-113.86:30:44:68:38,30:1061,0,1445:1:.:1:.:.:.:-0.0106314	0/1:129.501:148:71:2722:77:2963:-226.519,0.0,-204.827:77:52:148:71,77:2872,0,2601:.:1:1:.:.:.:-0.197241
chr21	36221072	.	T	C	6901.225	REJECT	NS=2;DP=295;DPB=333.0;AC=3;AN=4;AF=0.75;RO=92;AO=241;PRO=0.0;PAO=0.0;QR=3427;QA=9198;PQR=0.0;PQA=0.0;SRF=50;SRR=42;SAF=151;SAR=90;SRP=4.52089;SAP=36.5375;AB=0.646154;ABP=51.2504;RUN=1;RPP=22.914;RPPR=3.86001;RPL=97.0;RPR=144.0;EPP=10.5879;EPPR=3.86001;DPRA=0.0;ODDS=46.5403;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991701;PAIREDR=0.978261;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.825;Dels=0.0;FS=4.231;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.896;QD=28.635;ReadPosRankSum=0.692;SOR=1.1045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.422:72:0:0:73:2777:-250.068,-19.7862,0.0:72:100:72:0,71:2951,214,0:1:.:1:.:.:.:-0.0106314	0/1:119.422:258:92:3427:168:6421:-507.171,0.0,-237.901:167:65:258:90,167:6377,0,2997:.:1:1:.:.:.:-0.197241
chr21	36221088	.	C	T	5088.01	REJECT	NS=2;DP=311;DPB=350.0;AC=2;AN=4;AF=0.5;RO=170;AO=179;PRO=0.0;PAO=0.0;QR=6412;QA=6804;PQR=0.0;PQA=0.0;SRF=85;SRR=85;SAF=104;SAR=75;SRP=3.0103;SAP=13.2126;AB=0.511429;ABP=3.40737;RUN=1;RPP=16.2211;RPPR=3.21467;RPL=73.0;RPR=106.0;EPP=8.36013;EPPR=4.28764;DPRA=0.0;ODDS=210.428;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988827;PAIREDR=0.994118;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.285;Dels=0.0;FS=6.283;HaplotypeScore=2.9662;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6455;QD=16.16;ReadPosRankSum=0.946;SOR=1.075;ClippingRankSum=-0.723	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.974:75:43:1645:32:1248:-92.0342,0.0,-127.793:32:43:75:43,32:979,0,1550:1:.:1:.:.:.:-0.0106314	0/1:118.974:273:127:4767:147:5556:-425.616,0.0,-354.626:146:54:273:126,146:5370,0,4460:.:1:1:.:.:.:-0.197241
chr21	36221564	.	T	TAA	814.73	PASS	DP=48;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-0.524;FS=15.3165;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=0.1505;QD=12.255;RPA=2,4;RU=A;ReadPosRankSum=0.799;SOR=2.405;STR;ClippingRankSum=-0.849	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11,4:15:99.0:122,0,444:4:27:15:1:.:.:.:.:.:-0.0106314	0/1:31,39:75:99.0:1582,0,1191:39:56:70:.:1:.:.:.:.:-0.197241
chr21	36221567	.	T	A	156.77	PASS	SOMATIC;DP=76;AC=1;AN=4;AF=0.5;MQ0=1;BaseQRankSum=-3.234;Dels=0.0;FS=1.452;HaplotypeScore=32.8742;MLEAC=1;MLEAF=0.5;MQ=57.57;MQRankSum=1.177;QD=2.06;ReadPosRankSum=-3.873;SOR=0.967	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0106314	0/1:66,10:76:99.0:185,0,2399:10:13:76:.:1:.:.:.:.:-0.197241
chr21	36221609	.	TTA	T	530.73	PASS	SOMATIC;DP=46;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.604;FS=9.039;MLEAC=1;MLEAF=0.5;MQ=47.48;MQRankSum=-3.273;QD=11.54;RPA=5,4;RU=TA;ReadPosRankSum=3.016;SOR=3.033;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0106314	0/1:21,15:41:99.0:568,0,662:15:42:36:.:1:.:.:.:.:-0.197241
chr21	36221620	.	T	G	510.77	PASS	SOMATIC;DP=46;AC=1;AN=4;AF=0.5;MQ0=2;BaseQRankSum=1.801;Dels=0.0;FS=1.988;HaplotypeScore=33.0546;MLEAC=1;MLEAF=0.5;MQ=47.01;MQRankSum=-2.77;QD=11.1;ReadPosRankSum=3.093;SOR=1.485	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0106314	0/1:26,19:46:99.0:539,0,872:19:42:45:.:1:.:.:.:.:-0.197241
chr21	36221629	.	CTATA	C	644.73	PASS	SOMATIC;DP=46;AC=1;AN=4;AF=0.5;MQ0=0;BaseQRankSum=1.829;FS=8.544;MLEAC=1;MLEAF=0.5;MQ=47.47;MQRankSum=-2.688;QD=10.51;RPA=4,2;RU=TA;ReadPosRankSum=3.293;SOR=2.925;STR	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0106314	0/1:24,13:36:99.0:682,0,1282:13:35:37:.:1:.:.:.:.:-0.197241
chr21	36221656	.	A	C	101.429	REJECT	NS=2;DP=55;DPB=55.0;AC=2;AN=4;AF=0.5;RO=44;AO=11;PRO=0.0;PAO=0.0;QR=1613;QA=414;PQR=0.0;PQA=0.0;SRF=18;SRR=26;SAF=0;SAR=11;SRP=6.16881;SAP=26.8965;AB=0.2;ABP=46.0055;RUN=1;RPP=19.0002;RPPR=10.1169;RPL=10.0;RPR=1.0;EPP=19.0002;EPPR=10.1169;DPRA=0.0;ODDS=8.5599;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=43.5455;MQMR=44.6364;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=2;BaseQRankSum=-1.674;Dels=0.0;FS=14.659;HaplotypeScore=4.6806;MLEAC=1;MLEAF=0.5;MQ=48.18;MQRankSum=-1.234;QD=4.99;ReadPosRankSum=-1.065;SOR=3.941	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:37.176:15:12:436:3:115:-4.76997,0.0,-25.4563:3:20:15:.:.:.:.:1:.:.:.:-0.0106314	0/1:94.3631:41:32:1177:8:299:-15.5251,0.0,-79.4921:8:19:41:34,8:238,0,932:.:1:1:.:.:.:-0.197241
chr21	36221670	.	C	G	95.8824	REJECT	NS=2;DP=40;DPB=40.0;AC=2;AN=4;AF=0.5;RO=26;AO=13;PRO=0.0;PAO=0.0;QR=929;QA=507;PQR=0.0;PQA=0.0;SRF=9;SRR=17;SAF=5;SAR=8;SRP=8.35546;SAP=4.51363;AB=0.325;ABP=13.6505;RUN=1;RPP=11.1951;RPPR=6.01695;RPL=10.0;RPR=3.0;EPP=16.5402;EPPR=36.4176;DPRA=0.0;ODDS=2.31738;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=25.1538;MQMR=57.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=2;BaseQRankSum=1.17;Dels=0.0;FS=1.462;HaplotypeScore=6.647;MLEAC=1;MLEAF=0.5;MQ=50.31;MQRankSum=-4.382;QD=3.87;ReadPosRankSum=-1.078;SOR=0.446	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:10.4724:10:7:267:3:117:-2.81742,0.0,-18.3903:3:30:10:.:.:.:.:1:.:.:.:-0.0106314	0/1:97.40435:31:19:662:10:390:-13.3132,0.0,-51.9672:10:34:30:20,11:152,0,624:.:1:1:.:.:.:-0.197241
chr21	36221704	.	A	AG	35.2739	REJECT	SOMATIC;NS=2;DP=45;DPB=51.0;AC=1;AN=4;AF=0.25;RO=35;AO=8;PRO=4.5;PAO=2.5;QR=1287;QA=223;PQR=118.5;PQA=52.5;SRF=23;SRR=12;SAF=8;SAR=0;SRP=10.5174;SAP=20.3821;AB=0.222222;ABP=27.1378;RUN=1;RPP=4.09604;RPPR=16.9698;RPL=3.0;RPR=5.0;EPP=4.09604;EPPR=10.5174;DPRA=4.0;ODDS=6.64696;GTI=0;TYPE=ins;CIGAR=1M1I2M;NUMALT=1;MEANALT=2.0;LEN=1;MQM=34.625;MQMR=57.3714;PAIRED=1.0;PAIREDR=0.971429;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:28.8743:9:9:341:0:0:0.0,-2.46077,-29.6016:0:0:9:.:.:0:.:.:.:-0.0106314	0/1:35.2739:36:26:946:8:223:-9.1301,0.0,-78.4855:8:24:34:.:.:1:.:.:.:-0.197241
chr21	36221714	.	T	A	270.855	REJECT	NS=2;DP=64;DPB=79.0;AC=2;AN=2;AF=0.0;RO=40;AO=4;PRO=1.5;PAO=1.0;QR=1479;QA=140;PQR=28.6667;PQA=12.6667;SRF=31;SRR=9;SAF=4;SAR=0;SRP=29.2851;SAP=11.6962;AB=0.0816327;ABP=77.5051;RUN=1;RPP=11.6962;RPPR=45.5712;RPL=0.0;RPR=4.0;EPP=11.6962;EPPR=20.5992;DPRA=0.0;ODDS=27.9803;GTI=0;TYPE=snp;CIGAR=1X2M;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=58.45;PAIRED=1.0;PAIREDR=0.975;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=2;BaseQRankSum=-2.762;Dels=0.0;FS=0.0;HaplotypeScore=21.408;MLEAC=1;MLEAF=0.5;MQ=54.71;MQRankSum=1.597;QD=1.55;ReadPosRankSum=-3.806;SOR=1.154	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:121.402:15:9:334:0:0:-17.0046,-20.0008,-51.4806:0:0:15:.:.:.:.:1:.:.:.:-0.0106314	./1:118.311:50:31:1145:4:140:-24.33,-21.0033,-111.529:5:10:50:46,6:109,0,1460:.:1:1:.:.:.:-0.197241
chr21	36221714	.	T	TAA	270.855	REJECT	NS=2;DP=64;DPB=79.0;AC=2;AN=4;AF=0.5;RO=40;AO=20;PRO=1.5;PAO=1.5;QR=1479;QA=652;PQR=28.6667;PQA=28.6667;SRF=31;SRR=9;SAF=20;SAR=0;SRP=29.2851;SAP=46.4397;AB=0.3125;ABP=22.5536;RUN=1;RPP=24.2907;RPPR=45.5712;RPL=3.0;RPR=17.0;EPP=24.2907;EPPR=20.5992;DPRA=0.0;ODDS=27.9803;GTI=0;TYPE=ins;CIGAR=1M2I2M;NUMALT=2;MEANALT=1.5;LEN=2;MQM=47.3;MQMR=58.45;PAIRED=1.0;PAIREDR=0.975;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.402:15:9:334:6:233:-17.0046,0.0,-26.1543:6:40:15:.:.:1:.:.:.:-0.0106314	0/1:137.622:49:31:1145:14:419:-24.33,0.0,-88.0245:14:29:49:.:.:1:.:.:.:-0.197241
chr21	36221730	.	T	G	677.2	REJECT	NS=2;DP=74;DPB=83.0;AC=2;AN=4;AF=0.5;RO=49;AO=34;PRO=0.0;PAO=0.0;QR=1822;QA=1302;PQR=0.0;PQA=0.0;SRF=35;SRR=14;SAF=33;SAR=1;SRP=22.5536;SAP=68.4099;AB=0.409639;ABP=8.89682;RUN=1;RPP=28.557;RPPR=10.4997;RPL=7.0;RPR=27.0;EPP=23.7032;EPPR=3.40914;DPRA=0.0;ODDS=50.0346;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=52.5294;MQMR=58.6939;PAIRED=0.970588;PAIREDR=0.979592;technology.ILLUMINA=1.0;MQ0=2;BaseQRankSum=-0.288;Dels=0.0;FS=12.115;HaplotypeScore=3.9635;MLEAC=1;MLEAF=0.5;MQ=57.885;MQRankSum=-0.031;QD=12.845;ReadPosRankSum=-0.175;SOR=4.1065;ClippingRankSum=1.562	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:17:10:372:9:346:-26.126,0.0,-28.4663:8:47:17:8,7:270,0,318:1:.:1:.:.:.:-0.0106314	0/1:129.501:64:39:1450:25:956:-59.0788,0.0,-110.183:25:40:64:38,26:716,0,1323:.:1:1:.:.:.:-0.197241
chr21	36221741	.	C	A	668.43	REJECT	NS=2;DP=70;DPB=79.0;AC=2;AN=4;AF=0.5;RO=43;AO=32;PRO=0.0;PAO=0.0;QR=1421;QA=1206;PQR=0.0;PQA=0.0;SRF=29;SRR=14;SAF=30;SAR=2;SRP=14.3727;SAP=56.2114;AB=0.405063;ABP=9.19487;RUN=1;RPP=56.2114;RPPR=4.27278;RPL=2.0;RPR=30.0;EPP=42.0968;EPPR=9.12072;DPRA=0.0;ODDS=44.7226;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=58.625;MQMR=59.8605;PAIRED=0.96875;PAIREDR=0.976744;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=2;BaseQRankSum=1.857;Dels=0.0;FS=11.4885;HaplotypeScore=12.7596;MLEAC=1;MLEAF=0.5;MQ=59.0;MQRankSum=0.186;QD=14.06;ReadPosRankSum=-0.706;SOR=3.497;ClippingRankSum=1.562	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.128:17:9:306:9:331:-25.0428,0.0,-22.7852:8:47:17:8,7:270,0,318:1:.:1:.:.:.:-0.0106314	0/1:121.128:60:34:1115:23:875:-63.0533,0.0,-85.0018:23:39:59:34,24:822,0,925:.:1:1:.:.:.:-0.197241
chr21	36221741	.	C	T	668.43	REJECT	NS=2;DP=79;DPB=79.0;AC=2;AN=2;AF=0.0;RO=43;AO=4;PRO=0.0;PAO=0.0;QR=1421;QA=64;PQR=0.0;PQA=0.0;SRF=29;SRR=14;SAF=4;SAR=0;SRP=14.3727;SAP=11.6962;AB=0.0506329;ABP=141.572;RUN=1;RPP=5.18177;RPPR=4.27278;RPL=3.0;RPR=1.0;EPP=5.18177;EPPR=9.12072;DPRA=0.0;ODDS=44.7226;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=2;MEANALT=2.0;LEN=1;MQM=55.0;MQMR=59.8605;PAIRED=1.0;PAIREDR=0.976744;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:143.256:19:9:306:1:16:-25.0428,-26.3077,-51.2726:1:5:19:.:.:1:.:.:.:-0.0106314	./1:143.256:60:34:1115:3:48:-63.0533,-68.6878,-159.137:3:5:60:.:.:1:.:.:.:-0.197241
chr21	36221760	.	GTA	G	861.934	REJECT	NS=2;DP=82;DPB=91.1538;AC=2;AN=4;AF=0.5;RO=44;AO=38;PRO=8.5;PAO=5.5;QR=1559;QA=1359;PQR=284.0;PQA=201.0;SRF=31;SRR=13;SAF=36;SAR=2;SRP=19.0002;SAP=69.0688;AB=0.422222;ABP=7.73928;RUN=1;RPP=3.0103;RPPR=4.78696;RPL=19.0;RPR=19.0;EPP=3.9246;EPPR=3.79993;DPRA=0.0;ODDS=61.8949;GTI=0;TYPE=del;CIGAR=1M2D10M;NUMALT=1;MEANALT=3.5;LEN=2;MQM=58.0526;MQMR=59.5;PAIRED=0.973684;PAIREDR=0.977273;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1235;FS=11.8515;MLEAC=1;MLEAF=0.5;MQ=58.865;MQRankSum=0.37;QD=13.95;RPA=5,4;RU=TA;ReadPosRankSum=-0.2055;SOR=3.4245;STR;ClippingRankSum=-0.491	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.724:23:12:423:11:395:-29.4221,0.0,-31.9585:10:46:22:12,10:368,0,437:1:.:1:.:.:.:-0.0106314	0/1:123.724:68:32:1136:27:964:-69.5353,0.0,-93.1875:27:43:63:40,27:1038,0,1545:.:1:1:.:.:.:-0.197241
chr21	36222139	.	T	A	10088.385	REJECT	NS=2;DP=435;DPB=490.0;AC=3;AN=4;AF=0.75;RO=143;AO=347;PRO=0.0;PAO=0.0;QR=5534;QA=13424;PQR=0.0;PQA=0.0;SRF=61;SRR=82;SAF=175;SAR=172;SRP=9.70694;SAP=3.06662;AB=0.625654;ABP=55.3985;RUN=1;RPP=3.31693;RPPR=3.14697;RPL=177.0;RPR=170.0;EPP=6.3207;EPPR=3.02549;DPRA=0.0;ODDS=68.387;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994236;PAIREDR=0.993007;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.462;Dels=0.0;FS=5.6995;HaplotypeScore=3.9944;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=2.118;QD=26.535;ReadPosRankSum=-1.145;SOR=0.6695	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:108:0:0:108:4184:-376.577,-29.2741,0.0:108:100:108:0,108:4270,324,0:1:.:1:.:.:.:-0.0106314	0/1:129.501:381:143:5534:239:9240:-727.567,0.0,-394.24:239:63:381:142,239:9227,0,5011:.:1:1:.:.:.:-0.197241
chr21	36222258	.	G	A	5334.48	REJECT	NS=2;DP=357;DPB=405.0;AC=2;AN=4;AF=0.5;RO=214;AO=191;PRO=0.0;PAO=0.0;QR=8048;QA=7234;PQR=0.0;PQA=0.0;SRF=115;SRR=99;SAF=105;SAR=86;SRP=5.60795;SAP=7.1145;AB=0.471605;ABP=5.84662;RUN=1;RPP=11.2983;RPPR=12.1427;RPL=82.0;RPR=109.0;EPP=8.02401;EPPR=3.17265;DPRA=0.0;ODDS=284.852;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.9424;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.305;Dels=0.0;FS=0.207;HaplotypeScore=8.7319;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=2.133;QD=16.375;ReadPosRankSum=0.2325;SOR=0.7225;ClippingRankSum=-0.413	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:50:1907:45:1666:-124.234,0.0,-145.944:44:47:94:50,44:1486,0,1713:1:.:1:.:.:.:-0.0106314	0/1:129.501:310:164:6141:146:5568:-416.969,0.0,-468.406:146:47:310:164,146:5372,0,5833:.:1:1:.:.:.:-0.197241
chr21	36222324	.	AAAC	A	4903.62	REJECT	NS=2;DP=305;DPB=373.696;AC=2;AN=4;AF=0.5;RO=138;AO=159;PRO=103.0;PAO=90.0;QR=5250;QA=5868;PQR=3739.0;PQA=3271.0;SRF=67;SRR=71;SAF=75;SAR=84;SRP=3.26206;SAP=4.11652;AB=0.521311;ABP=4.21351;RUN=1;RPP=3.35173;RPPR=7.03854;RPL=77.0;RPR=82.0;EPP=3.6795;EPPR=3.57677;DPRA=0.0;ODDS=220.4;GTI=0;TYPE=del;CIGAR=1M3D19M;NUMALT=1;MEANALT=5.0;LEN=3;MQM=60.5031;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=36222327;HOMLEN=11;HOMSEQ=AACAACAACAA;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=1.107;FS=8.1265;MLEAC=1;MLEAF=0.5;MQ=60.605;MQRankSum=-0.4515;QD=17.63;RPA=4,3;RU=AAC;ReadPosRankSum=-0.275;SOR=0.8865;STR;ClippingRankSum=-1.262	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.831:73:33:1254:33:1185:-96.0606,0.0,-122.197:37:50:79:46,44:1390,0,1609:1:.:1:1:.:.:-0.0106314	0/1:117.831:278:105:3996:126:4683:-400.412,0.0,-360.844:145:55:269:140,190:6597,0,5726:.:1:1:1:.:.:-0.197241
chr21	36222447	.	T	C	5850.530000000001	REJECT	NS=2;DP=380;DPB=435.0;AC=2;AN=4;AF=0.5;RO=222;AO=211;PRO=0.0;PAO=0.0;QR=7831;QA=7980;PQR=0.0;PQA=0.0;SRF=114;SRR=108;SAF=97;SAR=114;SRP=3.36243;SAP=5.9845;AB=0.485057;ABP=3.85393;RUN=1;RPP=3.8439;RPPR=8.64439;RPL=110.0;RPR=101.0;EPP=12.9003;EPPR=3.0103;DPRA=0.0;ODDS=329.339;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990521;PAIREDR=0.990991;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.118;Dels=0.0;FS=3.8445;HaplotypeScore=4.8485;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5715;QD=16.32;ReadPosRankSum=-0.4255;SOR=0.825;ClippingRankSum=-0.86	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.033:108:58:2174:50:1915:-143.122,0.0,-166.404:50:46:108:58,50:1636,0,2010:1:.:1:.:.:.:-0.0106314	0/1:118.033:326:164:5657:161:6065:-457.656,0.0,-420.916:160:50:324:163,160:5796,0,5206:.:1:1:.:.:.:-0.197241
chr21	36222560	.	T	C	4922.905000000001	REJECT	NS=2;DP=300;DPB=346.0;AC=2;AN=4;AF=0.5;RO=171;AO=175;PRO=0.0;PAO=0.0;QR=6432;QA=6720;PQR=0.0;PQA=0.0;SRF=78;SRR=93;SAF=98;SAR=77;SRP=5.8675;SAP=8.48241;AB=0.50578;ABP=3.11071;RUN=1;RPP=9.57435;RPPR=6.68022;RPL=76.0;RPR=99.0;EPP=3.32051;EPPR=4.03889;DPRA=0.0;ODDS=291.398;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994286;PAIREDR=0.988304;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.823;Dels=0.0;FS=6.961;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.304;QD=18.03;ReadPosRankSum=0.055;SOR=0.705;ClippingRankSum=-0.07	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.8235:90:46:1692:45:1709:-129.21,0.0,-127.667:44:48:90:46,43:1553,0,1590:1:.:1:.:.:.:-0.0106314	0/1:118.8235:254:125:4740:130:5011:-381.687,0.0,-357.319:130:51:254:124,130:4837,0,4499:.:1:1:.:.:.:-0.197241
chr21	36222713	.	G	C	5010.89	REJECT	NS=2;DP=325;DPB=370.0;AC=2;AN=4;AF=0.5;RO=192;AO=178;PRO=0.0;PAO=0.0;QR=7219;QA=6772;PQR=0.0;PQA=0.0;SRF=101;SRR=91;SAF=85;SAR=93;SRP=4.14128;SAP=3.79105;AB=0.481081;ABP=4.16059;RUN=1;RPP=22.5292;RPPR=7.5342;RPL=69.0;RPR=109.0;EPP=3.0591;EPPR=3.41745;DPRA=0.0;ODDS=243.476;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.601;Dels=0.0;FS=2.395;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2375;QD=16.575;ReadPosRankSum=0.6235;SOR=0.75;ClippingRankSum=-1.414	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.015:89:51:1970:38:1460:-107.31,0.0,-153.221:38:43:89:51,38:1365,0,1752:1:.:1:.:.:.:-0.0106314	0/1:118.015:281:141:5249:140:5312:-401.791,0.0,-396.066:140:50:281:141,140:5124,0,4965:.:1:1:.:.:.:-0.197241
chr21	36222741	.	A	G	5495.37	REJECT	NS=2;DP=345;DPB=390.0;AC=2;AN=4;AF=0.5;RO=194;AO=195;PRO=0.0;PAO=0.0;QR=7413;QA=7353;PQR=0.0;PQA=0.0;SRF=98;SRR=96;SAF=100;SAR=95;SRP=3.05507;SAP=3.28869;AB=0.5;ABP=3.0103;RUN=1;RPP=7.03031;RPPR=4.12962;RPL=88.0;RPR=107.0;EPP=4.35773;EPPR=3.41325;DPRA=0.0;ODDS=255.145;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.9795;MQMR=60.0;PAIRED=0.994872;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.287;Dels=0.0;FS=0.3955;HaplotypeScore=14.5313;MLEAC=1;MLEAF=0.5;MQ=59.995;MQRankSum=0.536;QD=16.865;ReadPosRankSum=0.197;SOR=0.7565;ClippingRankSum=-0.366	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.003:90:51:1946:39:1504:-110.998,0.0,-150.792:39:43:90:51,39:1380,0,1811:1:.:1:.:.:.:-0.0106314	0/1:119.003:300:143:5467:156:5849:-445.133,0.0,-410.799:156:52:299:143,156:5642,0,5229:.:1:1:.:.:.:-0.197241
chr21	36222862	.	T	C	5933.955	REJECT	NS=2;DP=374;DPB=426.0;AC=2;AN=4;AF=0.5;RO=218;AO=208;PRO=0.0;PAO=0.0;QR=8418;QA=8115;PQR=0.0;PQA=0.0;SRF=114;SRR=104;SAF=108;SAR=100;SRP=4.00639;SAP=3.67845;AB=0.488263;ABP=3.52004;RUN=1;RPP=3.05206;RPPR=4.44467;RPL=105.0;RPR=103.0;EPP=3.38613;EPPR=5.56029;DPRA=0.0;ODDS=340.736;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995413;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.287;Dels=0.0;FS=0.5735;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6465;QD=17.92;ReadPosRankSum=-0.3645;SOR=0.6195;ClippingRankSum=0.391	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2895:102:51:1963:53:2076:-158.663,0.0,-148.491:52:50:102:50,51:1834,0,1735:1:.:1:.:.:.:-0.0106314	0/1:119.2895:322:167:6455:155:6039:-455.933,0.0,-493.35:155:48:322:167,155:5812,0,6265:.:1:1:.:.:.:-0.197241
chr21	36223096	.	TA	T	15.3844	REJECT	NS=2;DP=340;DPB=385.6;AC=1;AN=4;AF=0.25;RO=289;AO=25;PRO=59.5;PAO=43.5;QR=10945;QA=933;PQR=2077.0;PQA=1510.0;SRF=149;SRR=140;SAF=10;SAR=15;SRP=3.61891;SAP=5.18177;AB=0.0978261;ABP=132.26;RUN=1;RPP=3.09716;RPPR=25.7394;RPL=13.0;RPR=12.0;EPP=5.18177;EPPR=3.61891;DPRA=0.0;ODDS=3.51302;GTI=0;TYPE=del;CIGAR=1M1D13M;NUMALT=1;MEANALT=7.5;LEN=1;MQM=60.4;MQMR=60.0;PAIRED=1.0;PAIREDR=0.986159;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:15.3844:92:77:2893:9:327:-6.12369,0.0,-237.123:9:10:86:.:.:1:.:.:.:-0.0106314	0/0:121.3:248:212:8052:16:606:0.0,-11.5911,-720.835:16:7:228:.:.:0:.:.:.:-0.197241
chr21	36223234	.	T	C	5698.52	REJECT	NS=2;DP=361;DPB=405.0;AC=2;AN=4;AF=0.5;RO=199;AO=205;PRO=0.0;PAO=0.0;QR=7538;QA=7757;PQR=0.0;PQA=0.0;SRF=113;SRR=86;SAF=110;SAR=95;SRP=10.9651;SAP=5.39362;AB=0.506173;ABP=3.14434;RUN=1;RPP=4.292;RPPR=4.33064;RPL=97.0;RPR=108.0;EPP=3.8683;EPPR=4.33064;DPRA=0.0;ODDS=227.049;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.980488;PAIREDR=0.994975;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.764;Dels=0.0;FS=4.9065;HaplotypeScore=10.7285;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.496;QD=18.085;ReadPosRankSum=0.642;SOR=0.4375;ClippingRankSum=1.296	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.591:84:38:1368:48:1791:-137.958,0.0,-99.89:47:55:84:37,46:1588,0,1199:1:.:1:.:.:.:-0.0106314	0/1:120.591:318:161:6170:157:5966:-450.485,0.0,-468.869:156:49:317:161,155:5606,0,5950:.:1:1:.:.:.:-0.197241
chr21	36223627	.	G	A	2248.4	REJECT	NS=2;DP=400;DPB=456.0;AC=2;AN=4;AF=0.5;RO=341;AO=115;PRO=0.0;PAO=0.0;QR=13122;QA=4358;PQR=0.0;PQA=0.0;SRF=137;SRR=204;SAF=54;SAR=61;SRP=31.596;SAP=3.93554;AB=0.252193;ABP=246.234;RUN=1;RPP=7.25883;RPPR=3.1695;RPL=50.0;RPR=65.0;EPP=3.93554;EPPR=14.7846;DPRA=0.0;ODDS=257.943;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991304;PAIREDR=0.997067;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.386;Dels=0.0;FS=8.284;HaplotypeScore=4.8993;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.37;QD=10.785;ReadPosRankSum=0.406;SOR=0.814;ClippingRankSum=0.538	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:109:56:2132:55:2062:-155.513,0.0,-161.829:54:50:109:54,54:1902,0,1946:1:.:1:.:.:.:-0.0106314	0/1:129.501:345:285:10990:60:2296:-113.085,0.0,-895.003:60:17:345:285,60:1538,0,11245:.:1:1:.:.:.:-0.197241
chr21	36223744	.	C	T	6396.245000000001	REJECT	NS=2;DP=414;DPB=472.0;AC=2;AN=4;AF=0.5;RO=243;AO=229;PRO=0.0;PAO=0.0;QR=9296;QA=8775;PQR=0.0;PQA=0.0;SRF=124;SRR=119;SAF=132;SAR=97;SRP=3.2337;SAP=14.6263;AB=0.485169;ABP=3.91201;RUN=1;RPP=4.15767;RPPR=6.23623;RPL=120.0;RPR=109.0;EPP=17.433;EPPR=5.02092;DPRA=0.0;ODDS=375.572;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.9869;PAIREDR=0.995885;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.929;Dels=0.0;FS=4.3175;HaplotypeScore=6.8937;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.312;QD=17.755;ReadPosRankSum=-0.5725;SOR=0.9875;ClippingRankSum=-0.506	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.2565:111:58:2200:56:2172:-164.587,0.0,-167.118:55:49:111:55,54:2004,0,2053:1:.:1:.:.:.:-0.0106314	0/1:119.2565:357:185:7096:173:6603:-496.94,0.0,-541.279:173:48:357:184,173:6294,0,6819:.:1:1:.:.:.:-0.197241
chr21	36223886	.	G	A	5769.620000000001	REJECT	NS=2;DP=369;DPB=420.0;AC=2;AN=4;AF=0.5;RO=194;AO=216;PRO=0.0;PAO=0.0;QR=7237;QA=8105;PQR=0.0;PQA=0.0;SRF=95;SRR=99;SAF=101;SAR=115;SRP=3.18939;SAP=4.98071;AB=0.514286;ABP=3.7548;RUN=1;RPP=3.6537;RPPR=7.48756;RPL=104.0;RPR=112.0;EPP=17.527;EPPR=3.41325;DPRA=0.0;ODDS=302.612;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990741;PAIREDR=0.994845;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7275;Dels=0.0;FS=0.937;HaplotypeScore=52.3577;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0215;QD=13.645;ReadPosRankSum=-0.6395;SOR=0.7775;ClippingRankSum=1.045	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.283:110:49:1793:62:2337:-180.307,0.0,-131.308:59:54:109:52,56:1217,0,1572:1:.:1:.:.:.:-0.0106314	0/1:118.283:313:145:5444:154:5768:-438.251,0.0,-408.762:154:51:304:156,154:5460,0,5646:.:1:1:.:.:.:-0.197241
chr21	36223906	.	T	C	6386.465	REJECT	NS=2;DP=382;DPB=439.0;AC=2;AN=4;AF=0.5;RO=204;AO=233;PRO=0.0;PAO=0.0;QR=7665;QA=8728;PQR=0.0;PQA=0.0;SRF=106;SRR=98;SAF=122;SAR=111;SRP=3.69155;SAP=4.13797;AB=0.530752;ABP=6.61623;RUN=1;RPP=3.24329;RPPR=4.07475;RPL=114.0;RPR=119.0;EPP=11.9665;EPPR=3.05288;DPRA=0.0;ODDS=317.831;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995708;PAIREDR=0.995098;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.3095;Dels=0.0;FS=0.204;HaplotypeScore=9.6789;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.303;QD=18.92;ReadPosRankSum=-0.782;SOR=0.7185;ClippingRankSum=1.63	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:51:1870:62:2306:-176.958,0.0,-137.719:61:55:111:50,60:2119,0,1615:1:.:1:.:.:.:-0.0106314	0/1:129.501:325:153:5795:171:6422:-489.936,0.0,-433.519:171:53:323:152,171:6204,0,5468:.:1:1:.:.:.:-0.197241
chr21	36224276	.	T	C	1704.05	REJECT	NS=2;DP=120;DPB=139.0;AC=2;AN=4;AF=0.5;RO=70;AO=69;PRO=0.0;PAO=0.0;QR=2720;QA=2517;PQR=0.0;PQA=0.0;SRF=15;SRR=55;SAF=13;SAR=56;SRP=52.644;SAP=61.1995;AB=0.496403;ABP=3.02592;RUN=1;RPP=6.81824;RPPR=6.1124;RPL=40.0;RPR=29.0;EPP=12.1053;EPPR=20.8784;DPRA=0.0;ODDS=109.756;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=57.913;MQMR=60.0;PAIRED=0.971014;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.081;Dels=0.0;FS=0.0;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=59.285;MQRankSum=-0.42;QD=16.46;ReadPosRankSum=1.1375;SOR=0.7615;ClippingRankSum=-0.712	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:36:19:734:18:655:-48.9823,0.0,-56.1575:18:49:36:18,18:622,0,672:1:.:1:.:.:.:-0.0106314	0/1:129.501:102:51:1986:51:1862:-137.057,0.0,-151.191:51:50:102:51,51:1704,0,1934:.:1:1:.:.:.:-0.197241
chr21	36224466	.	AAAAAC	A	1328.24	REJECT	NS=2;DP=107;DPB=247.446;AC=2;AN=4;AF=0.5;RO=61;AO=42;PRO=156.0;PAO=133.0;QR=2334;QA=1500;PQR=5684.5;PQA=4775.5;SRF=51;SRR=10;SAF=36;SAR=6;SRP=62.8504;SAP=49.5419;AB=0.392523;ABP=13.7459;RUN=1;RPP=16.2459;RPPR=9.02635;RPL=13.0;RPR=29.0;EPP=16.2459;EPPR=3.0459;DPRA=0.0;ODDS=68.4317;GTI=0;TYPE=del;CIGAR=1M5D50M;NUMALT=1;MEANALT=3.0;LEN=5;MQM=61.1905;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=36224471;HOMLEN=27;HOMSEQ=AAAACAAAACAAAACAAAACAAAACAA;SVLEN=-5;SVTYPE=DEL;BaseQRankSum=1.3415;FS=0.5295;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=0.8235;QD=10.43;RPA=6,5;RU=AAAAC;ReadPosRankSum=0.6725;SOR=0.589;STR;ClippingRankSum=0.267	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:39:19:717:10:354:-32.9061,0.0,-95.6669:15:34:48:36,24:510,0,1756:1:.:1:1:.:.:-0.0106314	0/1:129.501:102:42:1617:32:1146:-112.615,0.0,-206.726:45:43:105:71,88:2719,0,3786:.:1:1:1:.:.:-0.197241
chr21	36224963	.	C	G	6169.8150000000005	REJECT	NS=2;DP=381;DPB=431.0;AC=2;AN=4;AF=0.5;RO=212;AO=218;PRO=0.0;PAO=0.0;QR=8137;QA=8445;PQR=0.0;PQA=0.0;SRF=96;SRR=116;SAF=100;SAR=118;SRP=7.10742;SAP=6.23763;AB=0.5058;ABP=3.13626;RUN=1;RPP=4.96263;RPPR=4.03458;RPL=102.0;RPR=116.0;EPP=3.05014;EPPR=3.05127;DPRA=0.0;ODDS=268.384;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990826;PAIREDR=0.995283;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.0005;Dels=0.0;FS=3.4675;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.552;QD=19.52;ReadPosRankSum=0.569;SOR=0.828;ClippingRankSum=-0.17	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.076:96:42:1596:55:2152:-167.408,0.0,-117.372:55:57:96:41,55:2049,0,1417:1:.:1:.:.:.:-0.0106314	0/1:119.076:333:170:6541:163:6293:-475.802,0.0,-498.126:162:49:332:169,162:6002,0,6305:.:1:1:.:.:.:-0.197241
chr21	36224983	.	T	C	1684.76	REJECT	NS=2;DP=372;DPB=418.0;AC=2;AN=4;AF=0.5;RO=328;AO=90;PRO=0.0;PAO=0.0;QR=12734;QA=3430;PQR=0.0;PQA=0.0;SRF=145;SRR=183;SAF=45;SAR=45;SRP=12.5701;SAP=3.0103;AB=0.215311;ABP=297.271;RUN=1;RPP=3.39634;RPPR=6.82362;RPL=47.0;RPR=43.0;EPP=5.42305;EPPR=3.03678;DPRA=0.0;ODDS=160.829;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.988889;PAIREDR=0.990854;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4395;Dels=0.0;FS=6.1365;HaplotypeScore=8.8037;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.239;QD=9.82;ReadPosRankSum=-0.2425;SOR=0.379;ClippingRankSum=1.767	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:46:1801:43:1650:-124.409,0.0,-137.999:42:48:88:46,42:1502,0,1753:1:.:1:.:.:.:-0.0106314	0/1:129.501:327:282:10933:47:1780:-70.9733,0.0,-894.228:46:14:327:280,46:972,0,11193:.:1:1:.:.:.:-0.197241
chr21	36226112	.	A	C	472.324	REJECT	NS=2;DP=156;DPB=226.286;AC=2;AN=2;AF=0.0;RO=48;AO=6;PRO=34.6786;PAO=7.09524;QR=1717;QA=90;PQR=1239.55;PQA=230.548;SRF=12;SRR=36;SAF=0;SAR=6;SRP=29.068;SAP=16.0391;AB=0.0508475;ABP=209.779;RUN=1;RPP=8.80089;RPPR=21.1059;RPL=5.0;RPR=1.0;EPP=8.80089;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=6;MEANALT=16.0;LEN=1;MQM=59.6667;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:13:460:0:0:-19.9765,-46.5585,-341.354:0:0:35:.:.:1:.:.:.:-0.0106314	./1:160.002:118:35:1257:6:90:-33.606,-89.7189,-781.279:6:6:98:.:.:1:.:.:.:-0.197241
chr21	36226112	.	A	T	472.324	REJECT	NS=2;DP=156;DPB=226.286;AC=2;AN=2;AF=0.0;RO=48;AO=23;PRO=34.6786;PAO=6.09524;QR=1717;QA=332;PQR=1239.55;PQA=215.548;SRF=12;SRR=36;SAF=0;SAR=23;SRP=29.068;SAP=52.9542;AB=0.147436;ABP=171.439;RUN=1;RPP=5.3706;RPPR=21.1059;RPL=9.0;RPR=14.0;EPP=5.3706;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=snp;CIGAR=1X20M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=56.8261;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:13:460:9:159:-19.9765,-34.6807,-327.148:9:26:35:.:.:1:.:.:.:-0.0106314	./1:160.002:118:35:1257:14:173:-33.606,-85.4942,-776.036:14:14:98:.:.:1:.:.:.:-0.197241
chr21	36226112	.	A	AT	472.324	REJECT	NS=2;DP=156;DPB=226.286;AC=2;AN=4;AF=0.5;RO=48;AO=26;PRO=34.6786;PAO=32.1786;QR=1717;QA=655;PQR=1239.55;PQA=1081.55;SRF=12;SRR=36;SAF=7;SAR=19;SRP=29.068;SAP=15.0369;AB=0.166667;ABP=153.566;RUN=1;RPP=6.01695;RPPR=21.1059;RPL=16.0;RPR=10.0;EPP=4.34659;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.8395;FS=1.996;MLEAC=1;MLEAF=0.5;MQ=60.355;MQRankSum=0.251;QD=3.46;RPA=15,16;RU=T;ReadPosRankSum=-1.919;SOR=0.6435;STR;ClippingRankSum=0.564	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:36:13:460:10:266:-19.9765,0.0,-40.8142:13:39:35:18,17:276,0,286:1:.:1:.:.:.:-0.0106314	0/1:129.501:153:35:1257:16:389:-33.606,0.0,-117.876:32:26:114:82,48:536,0,1102:.:1:1:.:.:.:-0.197241
chr21	36226112	.	A	TT	472.324	REJECT	NS=2;DP=156;DPB=226.286;AC=2;AN=2;AF=0.0;RO=48;AO=10;PRO=34.6786;PAO=7.09524;QR=1717;QA=116;PQR=1239.55;PQA=229.548;SRF=12;SRR=36;SAF=0;SAR=10;SRP=29.068;SAP=24.725;AB=0.0847458;ABP=179.746;RUN=1;RPP=24.725;RPPR=21.1059;RPL=0.0;RPR=10.0;EPP=24.725;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=complex;CIGAR=1X1I20M;NUMALT=6;MEANALT=16.0;LEN=22;MQM=70.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:13:460:0:0:-19.9765,-46.5585,-341.354:0:0:35:.:.:1:.:.:.:-0.0106314	./1:160.002:118:35:1257:10:116:-33.606,-88.5519,-779.862:10:10:98:.:.:1:.:.:.:-0.197241
chr21	36226112	.	A	ATT	472.324	REJECT	NS=2;DP=156;DPB=226.286;AC=2;AN=2;AF=0.0;RO=48;AO=5;PRO=34.6786;PAO=26.1786;QR=1717;QA=137;PQR=1239.55;PQA=939.548;SRF=12;SRR=36;SAF=2;SAR=3;SRP=29.068;SAP=3.44459;AB=0.0320513;ABP=299.723;RUN=1;RPP=6.91895;RPPR=21.1059;RPL=4.0;RPR=1.0;EPP=3.44459;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=6;MEANALT=11.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:13:460:2:56:-19.9765,-19.5435,-62.7594:2:6:35:.:.:1:.:.:.:-0.0106314	./1:160.002:118:35:1257:3:81:-33.606,-32.5667,-155.208:3:3:98:.:.:1:.:.:.:-0.197241
chr21	36226112	.	AT	A	472.324	PASS	SOMATIC;NS=2;DP=156;DPB=226.286;AC=2;AN=2;AF=0.0;RO=48;AO=15;PRO=34.6786;PAO=23.6786;QR=1717;QA=372;PQR=1239.55;PQA=810.714;SRF=12;SRR=36;SAF=1;SAR=14;SRP=29.068;SAP=27.4756;AB=0.0961538;ABP=223.999;RUN=1;RPP=3.15506;RPPR=21.1059;RPL=7.0;RPR=8.0;EPP=4.31318;EPPR=3.73412;DPRA=0.0;ODDS=43.4815;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=6;MEANALT=11.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:38:13:460:1:36:-19.9765,-28.3966,-153.99:1:3:35:.:.:1:.:.:.:-0.0106314	./1:160.002:118:35:1257:14:336:-33.606,-22.2688,-273.814:14:14:98:.:.:1:.:.:.:-0.197241
chr21	36226892	.	G	GA	11.8354	REJECT	NS=2;DP=215;DPB=294.852;AC=2;AN=2;AF=0.0;RO=152;AO=13;PRO=65.5;PAO=55.5;QR=5426;QA=454;PQR=2265.67;PQA=1891.67;SRF=114;SRR=38;SAF=12;SAR=1;SRP=85.5263;SAP=23.2217;AB=0.0961538;ABP=76.6733;RUN=1;RPP=7.18621;RPPR=65.2401;RPL=4.0;RPR=9.0;EPP=4.51363;EPPR=28.2108;DPRA=0.0;ODDS=2.65059;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=2;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993421;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:11.4332:52:34:1183:5:173:-5.54165,-2.16418,-115.874:5:11:44:.:.:1:.:.:.:-0.0106314	./1:70.8557:163:118:4243:8:281:0.0,-6.51991,-370.779:8:6:133:.:.:1:.:.:.:-0.197241
chr21	36226892	.	GA	G	11.8354	REJECT	NS=2;DP=215;DPB=294.852;AC=2;AN=3;AF=0.25;RO=152;AO=12;PRO=65.5;PAO=57.0;QR=5426;QA=409;PQR=2265.67;PQA=1953.67;SRF=114;SRR=38;SAF=8;SAR=4;SRP=85.5263;SAP=5.9056;AB=0.0961538;ABP=76.6733;RUN=1;RPP=3.73412;RPPR=65.2401;RPL=5.0;RPR=7.0;EPP=9.52472;EPPR=28.2108;DPRA=0.0;ODDS=2.65059;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=2;MEANALT=17.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.993421;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:11.4332:52:34:1183:5:179:-5.54165,0.0,-119.731:5:11:44:.:.:1:.:.:.:-0.0106314	./1:70.8557:163:118:4243:7:230:0.0,-6.24394,-370.497:7:5:133:.:.:1:.:.:.:-0.197241
chr21	36227745	.	C	T	1113.77	PASS	SOMATIC;NS=2;DP=164;DPB=164.0;AC=1;AN=3;AF=0.25;RO=117;AO=47;PRO=0.0;PAO=0.0;QR=4536;QA=1714;PQR=0.0;PQA=0.0;SRF=25;SRR=92;SAF=7;SAR=40;SRP=86.3243;SAP=53.3238;AB=0.391667;ABP=15.2429;RUN=1;RPP=4.16534;RPPR=6.14687;RPL=26.0;RPR=21.0;EPP=3.0565;EPPR=7.18621;DPRA=2.72727;ODDS=28.4919;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.7872;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.113;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-0.753;QD=12.33;ReadPosRankSum=-0.177;SOR=0.669	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:123.683:43:44:1711:0:0:0.0,-11.9479,-154.231:0:0:43:43,0:.:0.0:0:.:.:.:0:.:.:0:-0.0106314	0/1:120.811:120:73:2825:47:1714:-121.592,0.0,-221.758:47:39:120:72,47:36.0:0.395:2:1508,0,2824:.:1:1:.:.:1:-0.197241
chr21	36228360	.	C	T	2805.21	PASS	SOMATIC;NS=2;DP=413;DPB=413.0;AC=1;AN=3;AF=0.25;RO=305;AO=107;PRO=0.0;PAO=0.0;QR=11654;QA=4117;PQR=0.0;PQA=0.0;SRF=160;SRR=145;SAF=53;SAR=54;SRP=4.61221;SAP=3.03059;AB=0.341853;ABP=71.0058;RUN=1;RPP=3.51765;RPPR=4.61221;RPL=56.0;RPR=51.0;EPP=3.51765;EPPR=7.46004;DPRA=3.13;ODDS=63.375;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=2.673;Dels=0.0;FS=0.907;HaplotypeScore=5.9651;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.267;QD=11.59;ReadPosRankSum=-0.349;SOR=0.703	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:141.702:97:100:3845:0:0:0.0,-27.0975,-346.09:0:0:97:95,0:.:0.0:0:.:.:.:0:.:.:0:-0.0106314	0/1:120.351:312:205:7809:107:4117:-285.84,0.0,-617.879:106:34:311:197,102:38.0:0.344:2:3644,0,7770:.:1:1:.:.:1:-0.197241
chr21	36228390	.	A	T	14376.4	REJECT	NS=2;DP=380;DPB=431.0;AC=4;AN=4;AF=1.0;RO=0;AO=431;PRO=0.0;PAO=0.0;QR=0;QA=16452;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=250;SAR=181;SRP=0.0;SAP=26.9973;AB=0.0;ABP=0.0;RUN=1;RPP=13.2127;RPPR=0.0;RPL=193.0;RPR=238.0;EPP=3.61992;EPPR=0.0;DPRA=0.0;ODDS=66.6948;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9861;MQMR=0.0;PAIRED=0.99536;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.0;MQ=59.99;QD=31.145;SOR=1.2645	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:100:0:0:100:3791:-341.236,-27.0901,0.0:100:100:100:0,100:4202,300,0:1:.:1:.:.:.:-0.0106314	1/1:129.501:330:0:0:331:12661:-1138.7,-89.5921,0.0:330:100:330:0,330:14059,969,0:.:1:1:.:.:.:-0.197241
chr21	36229637	.	G	A	6591.635	REJECT	NS=2;DP=438;DPB=493.0;AC=2;AN=4;AF=0.5;RO=259;AO=234;PRO=0.0;PAO=0.0;QR=9850;QA=8955;PQR=0.0;PQA=0.0;SRF=143;SRR=116;SAF=114;SAR=120;SRP=9.12228;SAP=3.34437;AB=0.474645;ABP=5.76318;RUN=1;RPP=11.3621;RPPR=3.01868;RPL=102.0;RPR=132.0;EPP=13.7377;EPPR=6.70767;DPRA=0.0;ODDS=365.153;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.987179;PAIREDR=0.992278;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.1045;Dels=0.0;FS=7.9915;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.216;QD=16.955;ReadPosRankSum=0.033;SOR=0.664;ClippingRankSum=-0.851	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.092:109:55:2107:55:2093:-158.571,0.0,-159.839:54:50:109:54,54:1862,0,1882:1:.:1:.:.:.:-0.0106314	0/1:118.092:383:204:7743:179:6862:-513.468,0.0,-592.685:179:47:383:204,179:6572,0,7478:.:1:1:.:.:.:-0.197241
chr21	36229941	.	C	T	5836.825000000001	REJECT	NS=2;DP=395;DPB=451.0;AC=2;AN=4;AF=0.5;RO=240;AO=211;PRO=0.0;PAO=0.0;QR=9239;QA=8079;PQR=0.0;PQA=0.0;SRF=119;SRR=121;SAF=114;SAR=97;SRP=3.04649;SAP=5.9845;AB=0.467849;ABP=7.05954;RUN=1;RPP=8.45442;RPPR=3.15506;RPL=94.0;RPR=117.0;EPP=3.8439;EPPR=9.12661;DPRA=0.0;ODDS=356.101;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995833;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.369;Dels=0.0;FS=2.907;HaplotypeScore=5.8567;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.419;QD=16.59;ReadPosRankSum=0.911;SOR=0.862;ClippingRankSum=0.057	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.276:110:57:2188:54:2063:-155.594,0.0,-166.861:54:49:110:56,54:1851,0,1998:1:.:1:.:.:.:-0.0106314	0/1:120.276:340:183:7051:157:6016:-449.0,0.0,-542.105:157:46:340:183,157:5726,0,6904:.:1:1:.:.:.:-0.197241
chr21	36229995	.	C	A	6981.8150000000005	REJECT	NS=2;DP=442;DPB=512.0;AC=2;AN=4;AF=0.5;RO=265;AO=247;PRO=0.0;PAO=0.0;QR=9981;QA=9544;PQR=0.0;PQA=0.0;SRF=139;SRR=126;SAF=135;SAR=112;SRP=4.39513;SAP=7.66094;AB=0.482422;ABP=4.38443;RUN=1;RPP=4.98836;RPPR=7.34505;RPL=116.0;RPR=131.0;EPP=4.49604;EPPR=4.39513;DPRA=0.0;ODDS=412.878;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995951;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.0535;Dels=0.0;FS=2.016;HaplotypeScore=7.8701;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.073;QD=16.68;ReadPosRankSum=0.281;SOR=0.7645;ClippingRankSum=-1.269	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:137:75:2848:63:2419:-180.286,0.0,-218.884:62:46:137:74,62:2074,0,2612:1:.:1:.:.:.:-0.0106314	0/1:129.501:373:190:7133:184:7125:-539.595,0.0,-540.247:183:49:373:190,183:6863,0,6799:.:1:1:.:.:.:-0.197241
chr21	36231159	.	A	C	9810.835	REJECT	NS=2;DP=421;DPB=478.0;AC=3;AN=4;AF=0.75;RO=135;AO=342;PRO=0.0;PAO=0.0;QR=5201;QA=13173;PQR=0.0;PQA=0.0;SRF=65;SRR=70;SAF=171;SAR=171;SRP=3.41242;SAP=3.0103;AB=0.628415;ABP=55.4342;RUN=1;RPP=4.63573;RPPR=11.5193;RPL=179.0;RPR=163.0;EPP=3.0357;EPPR=5.72866;DPRA=0.0;ODDS=70.8062;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991228;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.831;Dels=0.0;FS=2.4115;HaplotypeScore=4.8992;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=-0.893;QD=25.165;ReadPosRankSum=0.093;SOR=0.891	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:117.6595:112:0:0:112:4263:-383.645,-30.3248,0.0:112:100:112:0,113:4666,338,0:1:.:1:.:.:.:-0.0106314	0/1:117.6595:365:135:5201:230:8910:-702.486,0.0,-368.919:229:63:364:135,229:8850,0,4752:.:1:1:.:.:.:-0.197241
chr21	36231175	.	C	T	6204.015	REJECT	NS=2;DP=411;DPB=463.0;AC=2;AN=4;AF=0.5;RO=242;AO=221;PRO=0.0;PAO=0.0;QR=9130;QA=8487;PQR=0.0;PQA=0.0;SRF=120;SRR=122;SAF=123;SAR=98;SRP=3.04619;SAP=9.15134;AB=0.477322;ABP=5.07859;RUN=1;RPP=19.5272;RPPR=14.6393;RPL=131.0;RPR=90.0;EPP=3.80618;EPPR=17.3671;DPRA=0.0;ODDS=325.394;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99095;PAIREDR=0.991736;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=3.2965;Dels=0.0;FS=4.2375;HaplotypeScore=3.8969;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.1495;QD=17.835;ReadPosRankSum=0.884;SOR=0.8275;ClippingRankSum=0.418	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.24:102:50:1887:52:2002:-152.575,0.0,-142.206:52:51:102:50,52:1931,0,1670:1:.:1:.:.:.:-0.0106314	0/1:117.24:360:192:7243:169:6485:-485.51,0.0,-553.721:168:47:360:191,168:6140,0,6973:.:1:1:.:.:.:-0.197241
chr21	36410869	.	CCTCTCT	C	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=1;AN=3;AF=0.25;RO=0;AO=6;PRO=18.781;PAO=18.781;QR=0;QA=152;PQR=678.101;PQA=678.101;SRF=0;SRR=0;SAF=2;SAR=4;SRP=0.0;SAP=4.45795;AB=0.0444444;ABP=246.36;RUN=1;RPP=16.0391;RPPR=0.0;RPL=6.0;RPR=0.0;EPP=4.45795;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=del;CIGAR=1M6D37M;NUMALT=11;MEANALT=20.5;LEN=6;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:75.0706:40:0:0:5:137:-249.64,-238.659,-237.329:5:14:37:.:.:1:.:.:.:-0.0106314	0/0:160.002:95:0:0:1:15:-812.403,-811.324,-811.065:1:1:67:.:.:.:.:.:.:-0.02803
chr21	36410869	.	CCTCTCTCT	C	10430.6	REJECT	SOMATIC;NS=2;DP=135;DPB=211.795;AC=1;AN=3;AF=0.25;RO=0;AO=6;PRO=18.781;PAO=17.681;QR=0;QA=181;PQR=678.101;PQA=637.001;SRF=0;SRR=0;SAF=4;SAR=2;SRP=0.0;SAP=4.45795;AB=0.0444444;ABP=246.36;RUN=1;RPP=16.0391;RPPR=0.0;RPL=6.0;RPR=0.0;EPP=4.45795;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=del;CIGAR=1M8D35M;NUMALT=11;MEANALT=20.5;LEN=8;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:4:106:-249.64,-245.247,-290.98:4:11:37:.:.:.:.:.:.:-0.0106314	./1:160.002:95:0:0:2:75:-812.403,-806.739,-810.915:2:3:67:.:.:1:.:.:.:-0.02803
chr21	36410869	.	CCTCTCTCTCTCTCTCT	C	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=5;PRO=18.781;PAO=15.5143;QR=0;QA=166;PQR=678.101;PQA=555.834;SRF=0;SRR=0;SAF=3;SAR=2;SRP=0.0;SAP=3.44459;AB=0.037037;ABP=254.338;RUN=1;RPP=13.8677;RPPR=0.0;RPL=5.0;RPR=0.0;EPP=3.44459;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=del;CIGAR=1M16D27M;NUMALT=11;MEANALT=20.5;LEN=16;MQM=56.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:3:93:-249.64,-258.344,-438.979:3:8:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:2:73:-812.403,-813.421,-894.751:2:3:67:.:.:.:.:.:.:-0.02803
chr21	36410869	.	CCTCTCTCTCTCTCTCTCT	C	10430.6	REJECT	SOMATIC;NS=2;DP=135;DPB=211.795;AC=1;AN=4;AF=0.0;RO=0;AO=20;PRO=18.781;PAO=15.05;QR=0;QA=547;PQR=678.101;PQA=538.977;SRF=0;SRR=0;SAF=9;SAR=11;SRP=0.0;SAP=3.44459;AB=0.148148;ABP=148.177;RUN=1;RPP=38.1882;RPPR=0.0;RPL=19.0;RPR=1.0;EPP=4.74748;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=del;CIGAR=1M18D25M;NUMALT=11;MEANALT=20.5;LEN=18;MQM=58.95;MQMR=0.0;PAIRED=0.95;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.263;FS=2.836;MLEAC=1;MLEAF=0.5;MQ=54.87;MQRankSum=-1.134;QD=11.04;RPA=21,12;RU=CT;ReadPosRankSum=0.314;SOR=1.302;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:2:61:-249.64,-260.949,-441.843:2:5:37:.:.:.:.:.:.:.:.:-0.0106314	0/1:129.501:157:0:0:18:486:-812.403,-776.767,-961.666:52:54:87:20,87:14806,0,945:.:1:.:.:.:.:-0.02803
chr21	36410892	.	CTCTCTCTCTCTCTCTCTC	GTGTG	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=7;PRO=18.781;PAO=27.0286;QR=0;QA=217;PQR=678.101;PQA=950.545;SRF=0;SRR=0;SAF=5;SAR=2;SRP=0.0;SAP=5.80219;AB=0.0518519;ABP=238.511;RUN=1;RPP=3.32051;RPPR=0.0;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=1M14D22M1X1M1X1M1X2M;NUMALT=11;MEANALT=20.5;LEN=30;MQM=42.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:1:38:-249.64,-94.1769,-758.278:1:3:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:6:179:-812.403,-210.72,-1810.88:6:9:67:.:.:.:.:.:.:-0.02803
chr21	36410894	.	CTCTCTCTCTCTCTCTC	G	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=5;PRO=18.781;PAO=19.5119;QR=0;QA=145;PQR=678.101;PQA=701.739;SRF=0;SRR=0;SAF=3;SAR=2;SRP=0.0;SAP=3.44459;AB=0.037037;ABP=254.338;RUN=1;RPP=3.44459;RPPR=0.0;RPL=3.0;RPR=2.0;EPP=6.91895;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=1M16D24M1X2M;NUMALT=11;MEANALT=20.5;LEN=28;MQM=54.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:2:54:-249.64,-122.769,-336.207:2:5:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:3:91:-812.403,-594.867,-837.438:3:4:67:.:.:.:.:.:.:-0.02803
chr21	36410894	.	CTCTCTCTCTCTCTCTC	GTG	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=8;PRO=18.781;PAO=39.6119;QR=0;QA=212;PQR=678.101;PQA=1354.94;SRF=0;SRR=0;SAF=8;SAR=0;SRP=0.0;SAP=20.3821;AB=0.0592593;ABP=230.79;RUN=1;RPP=4.09604;RPPR=0.0;RPL=3.0;RPR=5.0;EPP=4.09604;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=1M14D24M1X1M1X2M;NUMALT=11;MEANALT=20.5;LEN=30;MQM=33.625;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:1:36:-249.64,-86.2736,-295.395:1:3:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:7:176:-812.403,-247.837,-455.57:7:10:67:.:.:.:.:.:.:-0.02803
chr21	36410894	.	CTCTCTCTCTCTCTCTC	GTGTG	10430.6	REJECT	SOMATIC;NS=2;DP=135;DPB=211.795;AC=1;AN=3;AF=0.25;RO=0;AO=32;PRO=18.781;PAO=33.6119;QR=0;QA=873;PQR=678.101;PQA=1193.27;SRF=0;SRR=0;SAF=22;SAR=10;SRP=0.0;SAP=12.7819;AB=0.237037;ABP=84.0947;RUN=1;RPP=56.2114;RPPR=0.0;RPL=2.0;RPR=30.0;EPP=12.7819;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=1M12D24M1X1M1X1M1X2M;NUMALT=11;MEANALT=20.5;LEN=32;MQM=38.3125;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:5:153:-249.64,-33.4579,-237.442:5:14:37:.:.:.:.:.:.:-0.0106314	./1:160.002:95:0:0:27:720:-812.403,-1.48798,-184.353:27:40:67:.:.:1:.:.:.:-0.02803
chr21	36410906	.	C	G	1805.77	PASS	DP=153;AC=2;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=-1.9005;Dels=0.0;FS=5.761;HaplotypeScore=91.2287;MLEAC=1;MLEAF=0.5;MQ=51.335;MQRankSum=-3.7935;QD=10.48;ReadPosRankSum=4.594;SOR=1.092;ClippingRankSum=0.46	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:18,23:41:99.0:695,0,437:23:56:41:1:.:.:.:.:.:-0.0106314	0/1:99,104:204:99.0:2973,0,3098:104:51:203:.:1:.:.:.:.:-0.02803
chr21	36410906	.	CTCTC	G	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=2;PRO=18.781;PAO=22.0762;QR=0;QA=52;PQR=678.101;PQA=797.03;SRF=0;SRR=0;SAF=1;SAR=1;SRP=0.0;SAP=3.0103;AB=0.05;ABP=73.366;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=3.0103;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=1M4D36M1X2M;NUMALT=11;MEANALT=14.0;LEN=40;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:2:52:-249.64,-117.48,-155.892:2:5:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:0:0:-812.403,-599.369,-657.765:0:0:67:.:.:.:.:.:.:-0.02803
chr21	36410906	.	CTCTC	GTGTG	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=1;AN=3;AF=0.25;RO=0;AO=11;PRO=18.781;PAO=36.1762;QR=0;QA=404;PQR=678.101;PQA=1288.56;SRF=0;SRR=0;SAF=7;SAR=4;SRP=0.0;SAP=4.78696;AB=0.0814815;ABP=208.399;RUN=1;RPP=26.8965;RPPR=0.0;RPL=0.0;RPR=11.0;EPP=4.78696;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=37M1X1M1X1M1X2M;NUMALT=11;MEANALT=20.5;LEN=44;MQM=44.4545;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:75.0706:40:0:0:10:368:-249.64,-10.9806,-38.5757:10:27:37:.:.:1:.:.:.:-0.0106314	0/0:160.002:95:0:0:1:36:-812.403,-51.0421,-55.8541:1:1:67:.:.:.:.:.:.:-0.02803
chr21	36410906	.	CTCTC	GTGTGTGTGTG	10430.6	REJECT	NS=2;DP=135;DPB=211.795;AC=0;AN=4;AF=0.0;RO=0;AO=2;PRO=18.781;PAO=29.1762;QR=0;QA=52;PQR=678.101;PQA=987.896;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.05;ABP=73.366;RUN=1;RPP=7.35324;RPPR=0.0;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=3.55542;GTI=1;TYPE=complex;CIGAR=36M6I1M1X1M1X1M1X2M;NUMALT=11;MEANALT=14.0;LEN=50;MQM=27.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:75.0706:40:0:0:2:52:-249.64,-87.5151,-121.938:2:5:37:.:.:.:.:.:.:-0.0106314	0/0:160.002:95:0:0:0:0:-812.403,-268.578,-293.443:0:0:67:.:.:.:.:.:.:-0.02803
chr21	36410908	.	C	G	3011.7700000000004	PASS	DP=151;AC=2;AN=4;AF=0.5;MQ0=0;ALERT;BaseQRankSum=-1.0005;Dels=0.0;FS=3.815;HaplotypeScore=91.2287;MLEAC=1;MLEAF=0.5;MQ=51.205;MQRankSum=-4.246;QD=17.81;ReadPosRankSum=4.676;SOR=1.2495;ClippingRankSum=-1.365	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:5,34:39:33.0:1178,0,33:34:87:39:1:.:.:.:.:.:-0.0106314	0/1:62,142:204:99.0:4902,0,1915:142:70:204:.:1:.:.:.:.:-0.02803
chr21	36410910	.	C	G	3943.75	PASS	DP=151;AC=3;AN=4;AF=0.75;MQ0=0;ALERT;BaseQRankSum=1.291;Dels=0.0;FS=3.7045;HaplotypeScore=88.3292;MLEAC=1;MLEAF=0.75;MQ=51.225;MQRankSum=-2.836;QD=25.625;ReadPosRankSum=3.8925;SOR=1.147;ClippingRankSum=-0.908	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:1,59:60:99.0:2369,169,0:59:98:60:1:.:.:.:.:.:-0.0106314	0/1:51,156:207:99.0:5584,0,1311:156:75:207:.:1:.:.:.:.:-0.02803
chr21	36410948	.	T	TAG	472.556	REJECT	NS=2;DP=272;DPB=374.87;AC=2;AN=3;AF=0.25;RO=169;AO=31;PRO=75.1667;PAO=75.1667;QR=6259;QA=983;PQR=2550.5;PQA=2550.5;SRF=83;SRR=86;SAF=14;SAR=17;SRP=3.12594;SAP=3.64073;AB=0.113971;ABP=355.076;RUN=1;RPP=28.2974;RPPR=3.12594;RPL=6.0;RPR=25.0;EPP=3.08035;EPPR=17.0028;DPRA=0.0;ODDS=30.0072;GTI=0;TYPE=ins;CIGAR=1M2I22M;NUMALT=2;MEANALT=12.5;LEN=2;MQM=56.2258;MQMR=57.2781;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.828;FS=2.491;MLEAC=1;MLEAF=0.5;MQ=54.28;MQRankSum=0.996;QD=3.37;ReadPosRankSum=-1.866;SOR=1.238;ClippingRankSum=1.247	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:111.8835:71:40:1498:13:444:-25.3431,0.0,-119.942:15:21:69:57,17:337,0,1435:1:.:1:.:.:.:-0.0106314	./1:138.754:203:129:4761:18:539:-30.0265,-21.6682,-407.895:18:10:174:.:.:.:.:1:.:.:.:-0.02803
chr21	36410948	.	TAG	T	472.556	REJECT	NS=2;DP=272;DPB=374.87;AC=2;AN=3;AF=0.25;RO=169;AO=38;PRO=75.1667;PAO=66.6667;QR=6259;QA=1183;PQR=2550.5;PQA=2247.0;SRF=83;SRR=86;SAF=14;SAR=24;SRP=3.12594;SAP=8.7247;AB=0.139706;ABP=309.699;RUN=1;RPP=3.9246;RPPR=3.12594;RPL=21.0;RPR=17.0;EPP=6.66752;EPPR=17.0028;DPRA=0.0;ODDS=30.0072;GTI=0;TYPE=del;CIGAR=1M2D20M;NUMALT=2;MEANALT=12.5;LEN=2;MQM=52.5;MQMR=57.2781;PAIRED=1.0;PAIREDR=0.994083;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:124.767:69:40:1498:11:312:-25.3431,-15.1616,-177.289:11:17:64:.:.:1:.:.:.:-0.0106314	0/1:138.754:203:129:4761:27:871:-30.0265,0.0,-440.5:27:16:174:.:.:1:.:.:.:-0.02803
chr21	36411127	.	C	T	1566.96	REJECT	NS=2;DP=347;DPB=396.0;AC=2;AN=4;AF=0.5;RO=309;AO=87;PRO=0.0;PAO=0.0;QR=11760;QA=3336;PQR=0.0;PQA=0.0;SRF=84;SRR=225;SAF=30;SAR=57;SRP=142.722;SAP=21.2057;AB=0.219697;ABP=273.26;RUN=1;RPP=4.23331;RPPR=21.2886;RPL=47.0;RPR=40.0;EPP=18.61;EPPR=6.10939;DPRA=0.0;ODDS=160.011;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.977011;PAIREDR=0.996764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8655;Dels=0.0;FS=3.347;HaplotypeScore=7.7782;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.828;QD=8.505;ReadPosRankSum=0.2265;SOR=0.3855;ClippingRankSum=-0.924	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.3215:94:55:2052:42:1629:-120.363,0.0,-158.427:41:43:94:51,40:1323,0,1762:1:.:1:.:.:.:-0.0106314	0/1:118.3215:299:254:9708:45:1707:-72.5736,0.0,-792.242:45:15:299:254,45:998,0,9959:.:1:1:.:.:.:-0.02803
chr21	39764211	.	T	A	917.672	REJECT	NS=2;DP=173;DPB=201.0;AC=2;AN=4;AF=0.5;RO=153;AO=48;PRO=0.0;PAO=0.0;QR=5796;QA=1805;PQR=0.0;PQA=0.0;SRF=127;SRR=26;SAF=36;SAR=12;SRP=147.789;SAP=29.068;AB=0.238806;ABP=122.117;RUN=1;RPP=14.5915;RPPR=82.8438;RPL=16.0;RPR=32.0;EPP=5.9056;EPPR=20.3963;DPRA=0.0;ODDS=77.455;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.4455;Dels=0.0;FS=3.8345;HaplotypeScore=1.9972;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.0635;QD=9.14;ReadPosRankSum=-0.624;SOR=0.263;ClippingRankSum=0.33	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:56:31:1121:25:963:-71.5986,0.0,-85.8064:25:45:56:31,25:875,0,1064:1:.:1:.:.:.:-0.0106314	0/1:129.501:145:122:4675:23:842:-36.4884,0.0,-381.397:23:16:145:122,23:486,0,4791:.:1:1:.:.:.:-0.02803
chr21	39870310	.	G	A	13849.099999999999	REJECT	NS=2;DP=362;DPB=415.0;AC=4;AN=4;AF=1.0;RO=0;AO=415;PRO=0.0;PAO=0.0;QR=0;QA=16036;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=178;SAR=237;SRP=0.0;SAP=21.2245;AB=0.0;ABP=0.0;RUN=1;RPP=42.6148;RPPR=0.0;RPL=251.0;RPR=164.0;EPP=3.14111;EPPR=0.0;DPRA=0.0;ODDS=69.2071;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99759;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.04;SOR=1.014	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.1875:104:0:0:104:4024:-362.176,-28.1812,0.0:104:100:104:0,104:4064,312,0:1:.:1:.:.:.:-0.0106314	1/1:126.1875:310:0:0:311:12012:-1080.4,-84.2355,0.0:310:100:310:0,310:13401,924,0:.:1:1:.:.:.:-0.02803
chr21	40525287	.	G	A	4921.745000000001	REJECT	NS=2;DP=305;DPB=356.0;AC=2;AN=4;AF=0.5;RO=180;AO=176;PRO=0.0;PAO=0.0;QR=6944;QA=6832;PQR=0.0;PQA=0.0;SRF=49;SRR=131;SAF=54;SAR=122;SRP=84.1269;SAP=60.0608;AB=0.494382;ABP=3.10789;RUN=1;RPP=38.9876;RPPR=33.1696;RPL=115.0;RPR=61.0;EPP=7.00778;EPPR=3.20332;DPRA=0.0;ODDS=314.82;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994318;PAIREDR=0.994444;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=2.1295;Dels=0.0;FS=5.1935;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3465;QD=17.595;ReadPosRankSum=1.338;SOR=0.493;ClippingRankSum=-1.377	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:53:2051:48:1851:-139.226,0.0,-157.244:47:47:99:52,46:1641,0,1814:1:.:1:.:.:.:-0.0106314	0/1:129.501:255:127:4893:128:4981:-378.966,0.0,-371.051:128:50:255:127,128:4848,0,4697:.:1:1:.:.:.:-0.02803
chr21	42845383	.	A	G	1291.53	REJECT	NS=1;DP=101;DPB=101.0;AC=1;AN=4;AF=0.5;RO=55;AO=46;PRO=0.0;PAO=0.0;QR=2048;QA=1804;PQR=0.0;PQA=0.0;SRF=18;SRR=37;SAF=15;SAR=31;SRP=17.2631;SAP=15.095;AB=0.455446;ABP=4.75178;RUN=1;RPP=3.76559;RPPR=4.94488;RPL=21.0;RPR=25.0;EPP=4.70971;EPPR=3.04978;DPRA=0.0;ODDS=297.385;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.981818;technology.ILLUMINA=1.0;BaseQRankSum=1.073;FS=1.81;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.806;QD=16.56;ReadPosRankSum=1.853;SOR=0.484;ClippingRankSum=0.921	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:99:55:2048:46:1804:-135.395,0.0,-156.968:46:46:99:51,46:1651,0,1767:1:.:1:.:.:.:-0.0106314	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.02803
chr21	42848560	.	CAG	C	11771.8	REJECT	NS=2;DP=326;DPB=185.75;AC=4;AN=4;AF=1.0;RO=0;AO=365;PRO=6.5;PAO=6.5;QR=0;QA=13229;PQR=176.5;PQA=176.5;SRF=0;SRR=0;SAF=138;SAR=227;SRP=0.0;SAP=50.1342;AB=0.0;ABP=0.0;RUN=1;RPP=16.1522;RPPR=0.0;RPL=206.0;RPR=159.0;EPP=31.3346;EPPR=0.0;DPRA=0.0;ODDS=58.45;GTI=0;TYPE=del;CIGAR=1M2D1M;NUMALT=1;MEANALT=1.0;LEN=2;MQM=60.4384;MQMR=0.0;PAIRED=0.989041;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=42848562;HOMLEN=0;SVLEN=-2;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.44;QD=32.17;SOR=1.4365	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:88:0:0:87:3081:-277.345,-23.5094,0.0:89:100:89:13,91:3953,268,0:1:.:1:1:.:.:-0.0106314	1/1:129.501:282:0:0:278:10148:-912.874,-75.1968,0.0:278:100:280:54,276:15251,843,0:.:1:1:1:.:.:-0.02803
chr21	42860307	.	C	T	9317.895	REJECT	NS=2;DP=252;DPB=288.0;AC=4;AN=4;AF=1.0;RO=0;AO=287;PRO=0.0;PAO=0.0;QR=0;QA=10834;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=207;SAR=80;SRP=0.0;SAP=125.044;AB=0.0;ABP=0.0;RUN=1;RPP=50.2304;RPPR=0.0;RPL=104.0;RPR=183.0;EPP=11.2498;EPPR=0.0;DPRA=0.0;ODDS=48.5976;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993031;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.235;SOR=1.945	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:71:0:0:71:2662:-239.71,-19.2306,0.0:70:100:70:0,70:2805,209,0:1:.:1:.:.:.:-0.0106314	1/1:129.501:216:0:0:216:8172:-735.154,-58.4848,0.0:216:100:216:0,216:9137,638,0:.:1:1:.:.:.:-0.02803
chr21	42866994	.	CA	C	1280.02	REJECT	NS=2;DP=117;DPB=204.472;AC=2;AN=2;AF=0.25;RO=9;AO=47;PRO=57.7833;PAO=46.7833;QR=324;QA=1459;PQR=2078.95;PQA=1672.45;SRF=5;SRR=4;SAF=29;SAR=18;SRP=3.25157;SAP=8.60069;AB=0.401709;ABP=12.8283;RUN=1;RPP=36.6912;RPPR=14.8328;RPL=10.0;RPR=37.0;EPP=3.42611;EPPR=5.18177;DPRA=0.0;ODDS=10.1092;GTI=0;TYPE=del;CIGAR=1M1D34M;NUMALT=4;MEANALT=16.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.978723;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.073;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=2.939;QD=10.3;RPA=16;RU=A;ReadPosRankSum=-1.441;SOR=0.966;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.2239:29:3:108:5:144:-14.4025,-4.41242,-20.3181:5:24:21:.:.:.:.:1:.:.:.:-0.0106314	./1:107.677:109:6:216:42:1315:-125.4,-13.2924,-42.7313:47:54:88:21,53:1417,211,317:.:1:1:.:.:.:-0.02803
chr21	42866994	.	CAA	C	1280.02	REJECT	NS=2;DP=117;DPB=204.472;AC=2;AN=3;AF=0.5;RO=9;AO=26;PRO=57.7833;PAO=46.6167;QR=324;QA=832;PQR=2078.95;PQA=1662.95;SRF=5;SRR=4;SAF=20;SAR=6;SRP=3.25157;SAP=19.3799;AB=0.222222;ABP=81.4246;RUN=1;RPP=15.0369;RPPR=14.8328;RPL=7.0;RPR=19.0;EPP=3.0103;EPPR=5.18177;DPRA=0.0;ODDS=10.1092;GTI=0;TYPE=del;CIGAR=1M2D33M;NUMALT=4;MEANALT=16.5;LEN=2;MQM=60.3846;MQMR=60.0;PAIRED=0.961538;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.1955;FS=0.5145;MLEAC=1;MLEAF=0.5;MQ=59.06;MQRankSum=1.822;QD=10.41;RPA=16;RU=A;ReadPosRankSum=-1.1185;SOR=0.8295;STR;ClippingRankSum=-0.054	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:69.11195:26:3:108:8:202:-14.4025,0.0,-15.1309:12:56:22:6,17:416,0,95:1:.:1:.:.:.:-0.0106314	./1:107.677:109:6:216:18:630:-125.4,-74.7434,-134.193:24:27:88:21,31:1417,647,1197:.:1:1:.:.:.:-0.02803
chr21	42866994	.	CAAA	C	1280.02	REJECT	NS=2;DP=117;DPB=204.472;AC=1;AN=3;AF=0.0;RO=9;AO=7;PRO=57.7833;PAO=44.2;QR=324;QA=220;PQR=2078.95;PQA=1579.45;SRF=5;SRR=4;SAF=6;SAR=1;SRP=3.25157;SAP=10.7656;AB=0.0598291;ABP=199.909;RUN=1;RPP=3.32051;RPPR=14.8328;RPL=3.0;RPR=4.0;EPP=3.32051;EPPR=5.18177;DPRA=0.0;ODDS=10.1092;GTI=0;TYPE=del;CIGAR=1M3D32M;NUMALT=4;MEANALT=16.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.2239:29:3:108:3:115:-14.4025,-7.67267,-69.7428:3:14:21:.:.:1:.:.:.:-0.0106314	0/0:116.354:88:6:216:4:105:-125.4,-125.495,-247.851:4:6:71:.:.:.:.:.:.:-0.02803
chr21	42867010	.	AGTAATAGAAAAGAAGAGGT	GTAATAGAAAAGAAGAGGA	1280.02	REJECT	NS=2;DP=117;DPB=204.472;AC=1;AN=3;AF=0.0;RO=9;AO=3;PRO=57.7833;PAO=8.61667;QR=324;QA=48;PQR=2078.95;PQA=314.2;SRF=5;SRR=4;SAF=3;SAR=0;SRP=3.25157;SAP=9.52472;AB=0.025641;ABP=231.683;RUN=1;RPP=3.73412;RPPR=14.8328;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=5.18177;DPRA=0.0;ODDS=10.1092;GTI=0;TYPE=complex;CIGAR=1M1D33M1X;NUMALT=4;MEANALT=16.5;LEN=35;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:43.2239:29:3:108:2:32:-14.4025,-58.9803,-574.209:2:10:21:.:.:1:.:.:.:-0.0106314	0/0:116.354:88:6:216:1:16:-125.4,-149.952,-1449.83:1:1:71:.:.:.:.:.:.:-0.02803
chr21	42867553	.	C	CA	334.181	REJECT	NS=2;DP=101;DPB=167.44;AC=2;AN=3;AF=0.25;RO=19;AO=15;PRO=37.4833;PAO=33.9833;QR=660;QA=486;PQR=1308.95;PQA=1157.95;SRF=14;SRR=5;SAF=13;SAR=2;SRP=12.2676;SAP=20.5268;AB=0.148515;ABP=111.39;RUN=1;RPP=14.7363;RPPR=36.0395;RPL=3.0;RPR=12.0;EPP=14.7363;EPPR=16.8392;DPRA=0.0;ODDS=17.4211;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.762;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.067;QD=6.57;ReadPosRankSum=0.198;SOR=0.515;ClippingRankSum=0.762	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:73.2639:19:5:178:4:134:-8.82408,0.0,-22.3465:5:34:16:9,7:117,0,73:1:.:1:.:.:.:-0.0106314	./1:90.9534:79:14:482:11:352:-33.541,-9.53232,-54.5197:11:21:52:.:.:.:.:1:.:.:.:-0.02803
chr21	42867553	.	CA	C	334.181	REJECT	NS=2;DP=101;DPB=167.44;AC=2;AN=3;AF=0.25;RO=19;AO=27;PRO=37.4833;PAO=23.3167;QR=660;QA=775;PQR=1308.95;PQA=799.617;SRF=14;SRR=5;SAF=20;SAR=7;SRP=12.2676;SAP=16.6021;AB=0.267327;ABP=50.5032;RUN=1;RPP=9.52472;RPPR=36.0395;RPL=9.0;RPR=18.0;EPP=6.95112;EPPR=16.8392;DPRA=0.0;ODDS=17.4211;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=4;MEANALT=17.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.37;FS=1.56;MLEAC=1;MLEAF=0.5;MQ=56.36;MQRankSum=-0.12;QD=3.34;RPA=16,15;RU=A;ReadPosRankSum=1.018;SOR=0.458;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.5278:22:5:178:6:131:-8.82408,-9.57218,-111.085:6:35:17:.:.:.:.:1:.:.:.:-0.0106314	0/1:94.9767:100:14:482:21:644:-33.541,0.0,-173.652:28:39:74:60,36:434,0,723:.:1:1:.:.:.:-0.02803
chr21	42867553	.	CAA	C	334.181	REJECT	NS=2;DP=101;DPB=167.44;AC=2;AN=2;AF=0.0;RO=19;AO=4;PRO=37.4833;PAO=22.15;QR=660;QA=78;PQR=1308.95;PQA=756.45;SRF=14;SRR=5;SAF=2;SAR=2;SRP=12.2676;SAP=3.0103;AB=0.039604;ABP=188.961;RUN=1;RPP=3.0103;RPPR=36.0395;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=16.8392;DPRA=0.0;ODDS=17.4211;GTI=0;TYPE=del;CIGAR=1M2D22M;NUMALT=4;MEANALT=17.5;LEN=2;MQM=51.75;MQMR=60.0;PAIRED=0.75;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.5278:22:5:178:2:48:-8.82408,-17.055,-131.867:2:12:17:.:.:1:.:.:.:-0.0106314	./1:90.9534:79:14:482:2:30:-33.541,-54.4921,-307.401:2:4:52:.:.:1:.:.:.:-0.02803
chr21	42867569	.	AC	A	334.181	REJECT	NS=2;DP=101;DPB=167.44;AC=2;AN=2;AF=0.0;RO=19;AO=4;PRO=37.4833;PAO=22.0667;QR=660;QA=44;PQR=1308.95;PQA=762.033;SRF=14;SRR=5;SAF=4;SAR=0;SRP=12.2676;SAP=11.6962;AB=0.0506329;ABP=141.572;RUN=1;RPP=11.6962;RPPR=36.0395;RPL=4.0;RPR=0.0;EPP=11.6962;EPPR=16.8392;DPRA=0.0;ODDS=17.4211;GTI=0;TYPE=del;CIGAR=17M1D7M;NUMALT=4;MEANALT=27.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:73.5278:22:5:178:0:0:-8.82408,-16.966,-105.459:0:0:17:.:.:1:.:.:.:-0.0106314	./1:90.9534:79:14:482:4:44:-33.541,-77.0057,-584.001:4:8:52:.:.:1:.:.:.:-0.02803
chr21	42867842	.	T	TA	533.3620000000001	REJECT	NS=2;DP=302;DPB=392.9;AC=2;AN=4;AF=0.5;RO=158;AO=46;PRO=50.8333;PAO=41.3333;QR=5761;QA=1454;PQR=1749.5;PQA=1412.0;SRF=77;SRR=81;SAF=23;SAR=23;SRP=3.2302;SAP=3.0103;AB=0.149837;ABP=329.969;RUN=1;RPP=12.2627;RPPR=18.8978;RPL=16.0;RPR=30.0;EPP=15.095;EPPR=29.6177;DPRA=0.0;ODDS=18.4627;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=19.0;LEN=1;MQM=60.4348;MQMR=59.9557;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.0895;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.362;QD=2.76;RPA=14,15;RU=A;ReadPosRankSum=0.152;SOR=0.623;STR;ClippingRankSum=0.816	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:67:29:1070:18:605:-45.961,0.0,-91.9944:23:36:63:35,28:397,0,598:1:.:1:.:.:.:-0.0106314	0/1:89.59135:266:129:4691:28:849:-31.9607,0.0,-399.757:39:18:214:185,51:274,0,3224:.:1:1:.:.:.:-0.02803
chr21	42867842	.	T	TAA	706.994	REJECT	NS=2;DP=307;DPB=392.9;AC=2;AN=2;AF=0.0;RO=158;AO=17;PRO=50.8333;PAO=41.3333;QR=5761;QA=486;PQR=1749.5;PQA=1412.0;SRF=77;SRR=81;SAF=8;SAR=9;SRP=3.2302;SAP=3.13803;AB=0.0553746;ABP=530.169;RUN=1;RPP=4.1599;RPPR=18.8978;RPL=7.0;RPR=10.0;EPP=3.13803;EPPR=29.6177;DPRA=0.0;ODDS=18.4627;GTI=0;TYPE=ins;CIGAR=1M2I19M;NUMALT=3;MEANALT=19.0;LEN=2;MQM=60.0;MQMR=59.9557;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:72:29:1070:7:213:-45.961,-32.3131,-127.283:7:11:63:.:.:1:.:.:.:-0.0106314	./1:80.1827:235:129:4691:10:273:-31.9607,-46.9442,-451.534:10:5:193:.:.:1:.:.:.:-0.02803
chr21	42867842	.	TA	T	706.994	REJECT	NS=2;DP=307;DPB=392.9;AC=2;AN=2;AF=0.0;RO=158;AO=35;PRO=50.8333;PAO=33.5;QR=5761;QA=1166;PQR=1749.5;PQA=1134.5;SRF=77;SRR=81;SAF=12;SAR=23;SRP=3.2302;SAP=10.5174;AB=0.114007;ABP=400.305;RUN=1;RPP=3.56868;RPPR=18.8978;RPL=19.0;RPR=16.0;EPP=3.07234;EPPR=29.6177;DPRA=0.0;ODDS=18.4627;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=19.0;LEN=1;MQM=60.0;MQMR=59.9557;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:72:29:1070:9:303:-45.961,-36.28,-196.181:9:14:63:.:.:1:.:.:.:-0.0106314	./1:80.1827:235:129:4691:26:863:-31.9607,-7.78927,-554.209:26:13:193:.:.:1:.:.:.:-0.02803
chr21	42868206	.	T	C	3300.06	PASS	SOMATIC;NS=2;DP=463;DPB=463.0;AC=1;AN=3;AF=0.25;RO=337;AO=126;PRO=0.0;PAO=0.0;QR=12985;QA=4757;PQR=0.0;PQA=0.0;SRF=157;SRR=180;SAF=66;SAR=60;SRP=6.41893;SAP=3.63072;AB=0.369501;ABP=53.4509;RUN=1;RPP=3.63072;RPPR=3.06829;RPL=66.0;RPR=60.0;EPP=3.63072;EPPR=10.9036;DPRA=2.79508;ODDS=77.1136;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997033;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.451;Dels=0.0;FS=6.631;HaplotypeScore=4.857;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.228;QD=12.53;ReadPosRankSum=0.144;SOR=0.634	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:143.734:120:122:4670:0:0:0.0,-33.064,-420.286:0:0:120:118,0:.:0.0:0:.:.:.:0:.:.:0:-0.0106314	0/1:121.367:341:215:8315:126:4757:-335.513,0.0,-655.528:126:37:341:210,122:37.0:0.364:2:4301,0,8270:.:1:1:.:.:1:-0.02803
chr21	42868876	.	G	A	543.1904999999999	REJECT	NS=2;DP=77;DPB=93.0;AC=2;AN=4;AF=0.5;RO=55;AO=35;PRO=0.0;PAO=0.0;QR=1769;QA=1015;PQR=0.0;PQA=0.0;SRF=22;SRR=33;SAF=16;SAR=19;SRP=7.78754;SAP=3.56868;AB=0.376344;ABP=15.362;RUN=1;RPP=3.07234;RPPR=3.99733;RPL=18.0;RPR=17.0;EPP=4.56135;EPPR=3.99733;DPRA=0.0;ODDS=48.6446;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.8;MQMR=59.8182;PAIRED=1.0;PAIREDR=0.981818;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2215;Dels=0.0;FS=1.3555;HaplotypeScore=5.8358;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-0.845;QD=9.025;ReadPosRankSum=-0.123;SOR=0.877;ClippingRankSum=0.06	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:28:19:641:12:336:-21.9326,0.0,-49.4776:10:38:27:15,9:278,0,590:1:.:1:.:.:.:-0.0106314	0/1:129.501:61:36:1128:23:679:-45.2607,0.0,-85.7134:23:39:59:36,23:494,0,1004:.:1:1:.:.:.:-0.02803
chr21	42868888	.	C	T	1294.21	REJECT	NS=2;DP=71;DPB=87.3333;AC=2;AN=4;AF=0.5;RO=32;AO=50;PRO=5.0;PAO=1.0;QR=971;QA=1676;PQR=53.5;PQA=21.5;SRF=15;SRR=17;SAF=22;SAR=28;SRP=3.28173;SAP=4.57376;AB=0.588235;ABP=8.75832;RUN=1;RPP=3.18402;RPPR=4.09604;RPL=26.0;RPR=24.0;EPP=3.18402;EPPR=16.3106;DPRA=0.0;ODDS=44.9581;GTI=0;TYPE=snp;CIGAR=2M1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=58.6562;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.6285;Dels=0.0;FS=0.511;HaplotypeScore=12.6459;MLEAC=1;MLEAF=0.5;MQ=59.645;MQRankSum=-0.246;QD=19.59;ReadPosRankSum=0.416;SOR=0.7575;ClippingRankSum=1.083	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.7945:26:11:324:18:587:-59.0349,0.0,-20.8405:16:60:26:10,14:494,0,325:1:.:1:.:.:.:-0.0106314	0/1:121.7945:57:21:647:32:1089:-90.468,0.0,-45.1779:33:60:55:23,35:1175,0,587:.:1:1:.:.:.:-0.02803
chr21	42868997	.	A	C	675.967	REJECT	NS=2;DP=124;DPB=143.0;AC=2;AN=4;AF=0.5;RO=106;AO=37;PRO=0.0;PAO=0.0;QR=3927;QA=1405;PQR=0.0;PQA=0.0;SRF=98;SRR=8;SAF=36;SAR=1;SRP=168.944;SAP=74.9036;AB=0.258741;ABP=75.3067;RUN=1;RPP=12.9286;RPPR=7.02548;RPL=12.0;RPR=25.0;EPP=16.2152;EPPR=9.64763;DPRA=0.0;ODDS=65.4713;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.8396;PAIRED=0.972973;PAIREDR=0.990566;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6385;Dels=0.0;FS=0.0;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.5;MQ=59.925;MQRankSum=-0.4;QD=10.615;ReadPosRankSum=0.794;SOR=0.6375;ClippingRankSum=-1.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.5815:37:19:700:19:728:-55.3395,0.0,-52.804:18:50:37:18,18:661,0,640:1:.:1:.:.:.:-0.0106314	0/1:119.5815:105:87:3227:18:677:-32.5243,0.0,-262.002:18:17:105:87,18:462,0,3237:.:1:1:.:.:.:-0.02803
chr21	42869063	.	A	G	6584.705	REJECT	NS=2;DP=181;DPB=209.0;AC=4;AN=4;AF=1.0;RO=0;AO=209;PRO=0.0;PAO=0.0;QR=0;QA=7822;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=172;SAR=37;SRP=0.0;SAP=192.365;AB=0.0;ABP=0.0;RUN=1;RPP=22.2211;RPPR=0.0;RPL=83.0;RPR=126.0;EPP=5.34801;EPPR=0.0;DPRA=0.0;ODDS=37.4092;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.985646;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.875;SOR=2.848	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:120.0785:52:0:0:53:1996:-179.84,-14.3716,0.0:52:100:52:0,51:2114,153,0:1:.:1:.:.:.:-0.0106314	1/1:126.007:155:0:0:156:5826:-524.18,-42.2135,0.0:155:100:155:0,154:6421,451,0:.:1:1:.:.:.:-0.02803
chr21	42871273	.	T	C	6523.33	REJECT	NS=2;DP=414;DPB=476.0;AC=2;AN=4;AF=0.5;RO=238;AO=238;PRO=0.0;PAO=0.0;QR=9252;QA=9070;PQR=0.0;PQA=0.0;SRF=93;SRR=145;SAF=96;SAR=142;SRP=27.6811;SAP=22.3163;AB=0.5;ABP=3.0103;RUN=1;RPP=5.96642;RPPR=3.33876;RPL=128.0;RPR=110.0;EPP=3.92268;EPPR=31.6226;DPRA=0.0;ODDS=385.938;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.7983;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995798;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3465;Dels=0.0;FS=0.731;HaplotypeScore=5.753;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.281;QD=18.26;ReadPosRankSum=-1.136;SOR=0.63;ClippingRankSum=1.405	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:122:58:2246:65:2495:-191.201,0.0,-168.8:64:53:122:57,64:2300,0,1987:1:.:1:.:.:.:-0.0106314	0/1:129.501:353:180:7006:173:6575:-495.27,0.0,-534.549:173:49:353:180,173:6295,0,6811:.:1:1:.:.:.:-0.02803
chr21	42871545	.	A	AT	2036.93	REJECT	NS=2;DP=398;DPB=442.778;AC=2;AN=4;AF=0.5;RO=295;AO=97;PRO=39.5;PAO=34.5;QR=11125;QA=3499;PQR=1287.0;PQA=1143.0;SRF=160;SRR=135;SAF=50;SAR=47;SRP=7.61088;SAP=3.21178;AB=0.243719;ABP=230.066;RUN=1;RPP=5.71904;RPPR=11.0263;RPL=43.0;RPR=54.0;EPP=9.47994;EPPR=10.0841;DPRA=0.0;ODDS=134.561;GTI=0;TYPE=ins;CIGAR=1M1I8M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.506;FS=1.625;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.4;QD=12.86;ReadPosRankSum=-0.866;SOR=0.918;ClippingRankSum=-0.062	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.817:99:44:1654:53:1936:-151.13,0.0,-122.356:54:55:98:45,55:1439,0,1112:1:.:1:.:.:.:-0.0106314	0/1:136.634:299:251:9471:44:1563:-59.074,0.0,-786.845:44:15:295:.:.:.:.:1:.:.:.:-0.02803
chr21	42871941	.	G	C	13330.1	REJECT	NS=2;DP=358;DPB=396.0;AC=4;AN=4;AF=1.0;RO=0;AO=395;PRO=0.0;PAO=0.0;QR=0;QA=14906;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=159;SAR=236;SRP=0.0;SAP=35.6044;AB=0.0;ABP=0.0;RUN=1;RPP=6.44617;RPPR=0.0;RPL=210.0;RPR=185.0;EPP=4.59905;EPPR=0.0;DPRA=0.0;ODDS=51.6625;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=4.857;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.66;SOR=1.171	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.877:75:0:0:76:2832:-254.968,-20.5617,0.0:75:100:75:0,74:3059,222,0:1:.:1:.:.:.:-0.0106314	1/1:123.877:320:0:0:319:12074:-1086.01,-86.3645,0.0:319:100:319:0,319:13515,945,0:.:1:1:.:.:.:-0.02803
chr21	42872897	.	G	C	15662.599999999999	REJECT	NS=2;DP=423;DPB=481.0;AC=4;AN=4;AF=1.0;RO=0;AO=479;PRO=0.0;PAO=0.0;QR=0;QA=17905;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=247;SAR=232;SRP=0.0;SAP=4.0303;AB=0.0;ABP=0.0;RUN=1;RPP=3.01483;RPPR=0.0;RPL=239.0;RPR=240.0;EPP=5.84364;EPPR=0.0;DPRA=0.0;ODDS=75.2645;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.987474;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.835;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=32.885;SOR=0.8375	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.6825:112:0:0:114:4179:-376.053,-30.8119,0.0:112:100:112:0,110:4394,328,0:1:.:1:.:.:.:-0.0106314	1/1:123.6825:366:0:0:365:13726:-1234.48,-98.759,0.0:365:100:365:0,365:15295,1069,0:.:1:1:.:.:.:-0.02803
chr21	42873550	.	AAAAAAAAA	G	443.934	REJECT	NS=2;DP=25;DPB=92.3673;AC=2;AN=4;AF=0.5;RO=1;AO=9;PRO=109.5;PAO=78.5;QR=37;QA=165;PQR=3722.0;PQA=2554.0;SRF=0;SRR=1;SAF=6;SAR=3;SRP=5.18177;SAP=5.18177;AB=0.36;ABP=7.26639;RUN=1;RPP=5.18177;RPPR=5.18177;RPL=3.0;RPR=6.0;EPP=5.18177;EPPR=5.18177;DPRA=0.0;ODDS=25.8644;GTI=0;TYPE=complex;CIGAR=1M8D14M1X25M;NUMALT=1;MEANALT=8.5;LEN=41;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:112.333:8:1:37:1:14:-25.7055,0.0,-12.5618:1:50:2:.:.:1:.:.:.:-0.0106314	0/1:160.002:17:0:0:8:151:-23.3439,0.0,-113.593:8:100:8:.:.:1:.:.:.:-0.02803
chr21	42873558	.	A	G	445.27	PASS	DP=52;AC=2;AN=4;AF=0.5;MQ0=0;BaseQRankSum=-1.823;Dels=0.02;FS=6.0775;HaplotypeScore=49.187;MLEAC=1;MLEAF=0.5;MQ=56.845;MQRankSum=1.185;QD=13.87;ReadPosRankSum=-0.098;SOR=1.5385;ClippingRankSum=-0.331	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:4,16:20:55.0:508,0,55:16:80:20:1:.:.:.:.:.:-0.0106314	0/1:59,23:82:99.0:439,0,1902:23:28:82:.:1:.:.:.:.:-0.02803
chr21	42873605	.	G	A	2642.76	REJECT	NS=2;DP=225;DPB=262.0;AC=2;AN=4;AF=0.5;RO=150;AO=112;PRO=0.0;PAO=0.0;QR=5311;QA=4076;PQR=0.0;PQA=0.0;SRF=108;SRR=42;SAF=88;SAR=24;SRP=66.0699;SAP=82.4241;AB=0.427481;ABP=14.9783;RUN=1;RPP=98.0122;RPPR=48.4085;RPL=21.0;RPR=91.0;EPP=77.5383;EPPR=3.93679;DPRA=0.0;ODDS=122.851;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.2143;MQMR=59.7467;PAIRED=0.928571;PAIREDR=0.993333;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.934;Dels=0.0;FS=7.119;HaplotypeScore=15.4039;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=0.241;QD=12.825;ReadPosRankSum=0.0065;SOR=1.6355;ClippingRankSum=-0.418	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5895:63:43:1478:23:870:-60.5291,0.0,-115.245:22:35:63:39,21:733,0,1285:1:.:1:.:.:.:-0.0106314	0/1:118.5895:192:107:3833:89:3206:-235.722,0.0,-292.237:86:44:192:106,83:2693,0,3650:.:1:1:.:.:.:-0.02803
chr21	42875004	.	C	T	5281.485000000001	REJECT	NS=2;DP=368;DPB=424.0;AC=2;AN=4;AF=0.5;RO=224;AO=200;PRO=0.0;PAO=0.0;QR=8379;QA=7464;PQR=0.0;PQA=0.0;SRF=90;SRR=134;SAF=77;SAR=123;SRP=21.778;SAP=25.9845;AB=0.471698;ABP=5.96022;RUN=1;RPP=3.40116;RPPR=6.15118;RPL=97.0;RPR=103.0;EPP=4.57376;EPPR=4.91034;DPRA=0.0;ODDS=346.27;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995;PAIREDR=0.986607;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.405;Dels=0.0;FS=5.3185;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.452;QD=16.23;ReadPosRankSum=-0.408;SOR=1.0375;ClippingRankSum=0.777	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.5155:107:56:2117:54:2024:-152.37,0.0,-160.763:53:49:107:52,52:1733,0,1828:1:.:1:.:.:.:-0.0106314	0/1:118.5155:313:168:6262:146:5440:-404.7,0.0,-478.294:146:46:313:167,146:5106,0,6042:.:1:1:.:.:.:-0.02803
chr21	42876400	.	C	T	5651.115	REJECT	NS=2;DP=415;DPB=476.0;AC=2;AN=4;AF=0.5;RO=255;AO=221;PRO=0.0;PAO=0.0;QR=9820;QA=8281;PQR=0.0;PQA=0.0;SRF=134;SRR=121;SAF=115;SAR=106;SRP=4.44943;SAP=3.80618;AB=0.464286;ABP=8.28388;RUN=1;RPP=3.09873;RPPR=3.22319;RPL=109.0;RPR=112.0;EPP=17.9551;EPPR=3.08694;DPRA=0.0;ODDS=343.319;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995475;PAIREDR=0.996078;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.0235;Dels=0.0;FS=0.194;HaplotypeScore=10.6981;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.152;QD=17.675;ReadPosRankSum=-0.601;SOR=0.6625;ClippingRankSum=1.298	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:117.7115:119:53:2030:69:2590:-200.046,0.0,-149.642:68:58:119:48,68:2440,0,1604:1:.:1:.:.:.:-0.0106314	0/1:117.7115:354:202:7790:152:5691:-415.996,0.0,-604.808:152:43:354:202,152:5247,0,7689:.:1:1:.:.:.:-0.02803
chr21	42877542	.	C	A	5319.035	REJECT	NS=2;DP=342;DPB=396.0;AC=2;AN=4;AF=0.5;RO=202;AO=193;PRO=0.0;PAO=0.0;QR=7752;QA=7384;PQR=0.0;PQA=0.0;SRF=104;SRR=98;SAF=107;SAR=86;SRP=3.3973;SAP=7.97206;AB=0.487374;ABP=3.55865;RUN=1;RPP=4.37169;RPPR=3.0103;RPL=91.0;RPR=102.0;EPP=3.02155;EPPR=11.4382;DPRA=0.0;ODDS=339.564;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994819;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.589;Dels=0.0;FS=2.6895;HaplotypeScore=7.8987;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.7225;QD=17.27;ReadPosRankSum=0.4355;SOR=0.8025;ClippingRankSum=1.435	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:106:56:2117:51:1966:-147.966,0.0,-161.545:51:48:106:55,51:1807,0,1910:1:.:1:.:.:.:-0.0106314	0/1:129.501:289:146:5635:142:5418:-409.321,0.0,-428.872:142:49:288:146,142:5160,0,5459:.:1:1:.:.:.:-0.02803
chr21	42878126	.	A	C	1637.94	REJECT	NS=2;DP=401;DPB=459.0;AC=2;AN=4;AF=0.5;RO=372;AO=87;PRO=0.0;PAO=0.0;QR=14293;QA=3274;PQR=0.0;PQA=0.0;SRF=175;SRR=197;SAF=41;SAR=46;SRP=5.83555;SAP=3.63429;AB=0.189542;ABP=387.276;RUN=1;RPP=12.0207;RPPR=6.37258;RPL=53.0;RPR=34.0;EPP=3.23494;EPPR=4.15441;DPRA=0.0;ODDS=49.0098;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.997312;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.837;Dels=0.0;FS=1.9525;HaplotypeScore=7.8225;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1735;QD=8.345;ReadPosRankSum=0.468;SOR=0.7185;ClippingRankSum=-0.604	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.833:113:62:2425:53:1987:-147.671,0.0,-187.085:52:46:113:60,52:1773,0,2297:1:.:1:.:.:.:-0.0106314	0/1:120.833:344:310:11868:34:1287:-22.6137,0.0,-974.263:34:10:344:310,34:411,0,12229:.:1:1:.:.:.:-0.02803
chr21	42879403	.	A	T	1482.37	PASS	SOMATIC;NS=2;DP=270;DPB=270.0;AC=1;AN=3;AF=0.25;RO=209;AO=61;PRO=0.0;PAO=0.0;QR=7835;QA=2247;PQR=0.0;PQA=0.0;SRF=139;SRR=70;SAF=30;SAR=31;SRP=52.4762;SAP=3.0459;AB=0.337017;ABP=44.7722;RUN=1;RPP=3.90025;RPPR=6.01296;RPL=33.0;RPR=28.0;EPP=3.0459;EPPR=6.01296;DPRA=2.03371;ODDS=56.5222;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995215;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.278;Dels=0.0;FS=14.985;HaplotypeScore=3.8711;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.367;QD=10.74;ReadPosRankSum=1.555;SOR=0.186	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:89:89:3362:0:0:0.0,-24.1213,-302.673:0:0:89:89,0:.:0.0:0:.:.:.:0:.:.:0:-0.0106314	0/1:129.501:181:120:4473:61:2247:-153.185,0.0,-353.829:61:34:181:117,60:37.0:0.339:2:1973,0,4426:.:1:1:.:.:1:-0.02803
chr21	42879604	.	C	A	4779.58	REJECT	NS=2;DP=309;DPB=358.0;AC=2;AN=4;AF=0.5;RO=181;AO=177;PRO=0.0;PAO=0.0;QR=6923;QA=6701;PQR=0.0;PQA=0.0;SRF=89;SRR=92;SAF=75;SAR=102;SRP=3.11827;SAP=11.9538;AB=0.494413;ABP=3.10735;RUN=1;RPP=3.31701;RPPR=6.47746;RPL=91.0;RPR=86.0;EPP=8.42058;EPPR=3.31023;DPRA=0.0;ODDS=308.13;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.6475;Dels=0.0;FS=3.738;HaplotypeScore=8.7986;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1635;QD=17.58;ReadPosRankSum=0.561;SOR=0.9345;ClippingRankSum=-0.049	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:47:1789:50:1892:-144.048,0.0,-134.742:49:51:95:46,48:1686,0,1574:1:.:1:.:.:.:-0.0106314	0/1:129.501:261:134:5134:127:4809:-361.923,0.0,-391.13:127:49:261:134,127:4602,0,4962:.:1:1:.:.:.:-0.02803
chr21	42879909	.	C	A	1136.84	REJECT	NS=2;DP=84;DPB=100.0;AC=2;AN=4;AF=0.5;RO=54;AO=46;PRO=0.0;PAO=0.0;QR=2081;QA=1666;PQR=0.0;PQA=0.0;SRF=19;SRR=35;SAF=12;SAR=34;SRP=13.3047;SAP=25.858;AB=0.46;ABP=4.40004;RUN=1;RPP=15.095;RPPR=3.6537;RPL=31.0;RPR=15.0;EPP=9.80795;EPPR=10.8919;DPRA=0.0;ODDS=47.2391;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-1.795;Dels=0.0;FS=3.184;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0775;QD=13.605;ReadPosRankSum=0.228;SOR=1.4165;ClippingRankSum=0.902	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:30:21:812:10:338:-22.0854,0.0,-64.851:10:32:30:20,10:295,0,737:1:.:1:.:.:.:-0.0106314	0/1:129.501:69:33:1269:36:1328:-100.9,0.0,-95.5695:36:52:69:33,36:1292,0,1219:.:1:1:.:.:.:-0.02803
chr21	45056085	.	GAAAGAAAAGA	G	3319.47	REJECT	NS=2;DP=49;DPB=415.632;AC=2;AN=3;AF=0.5;RO=7;AO=14;PRO=204.333;PAO=191.833;QR=261;QA=490;PQR=7560.92;PQA=7080.92;SRF=7;SRR=0;SAF=14;SAR=0;SRP=18.2106;SAP=33.4109;AB=0.285714;ABP=22.5536;RUN=1;RPP=3.63072;RPPR=3.32051;RPL=8.0;RPR=6.0;EPP=3.63072;EPPR=3.32051;DPRA=0.0;ODDS=23.1436;GTI=0;TYPE=del;CIGAR=1M10D84M;NUMALT=3;MEANALT=4.0;LEN=10;MQM=66.4286;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;END=45056095;HOMLEN=58;HOMSEQ=AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAA;SVLEN=-10;SVTYPE=DEL;BaseQRankSum=1.746;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=2.341;QD=6.8;ReadPosRankSum=-0.488;SOR=0.287;ClippingRankSum=0.203	GT:AD:GMIMUT:GMIMAF:GMICOV:GQ:DP:RO:QR:AO:QA:GL:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:31,17:15:37:41:115.0165:28:6:227:9:309:-31.7486,0.0,-65.1099:486,0,1926:1:.:1:1:.:.:-0.0106314	./1:66,89:47:37:92:100.507:34:1:34:5:181:-314.374,-263.424,-339.751:.:.:.:1:1:.:.:-0.02803
chr21	45056089	.	GAAAAGA	AAAAAG	3319.47	REJECT	NS=2;DP=49;DPB=415.632;AC=1;AN=3;AF=0.0;RO=7;AO=5;PRO=204.333;PAO=153.167;QR=261;QA=164;PQR=7560.92;PQA=5491.58;SRF=7;SRR=0;SAF=5;SAR=0;SRP=18.2106;SAP=13.8677;AB=0.147059;ABP=39.7976;RUN=1;RPP=3.44459;RPPR=3.32051;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=3.32051;DPRA=0.0;ODDS=23.1436;GTI=0;TYPE=complex;CIGAR=4M1X5M1D84M;NUMALT=3;MEANALT=7.0;LEN=94;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.033:15:6:227:0:0:-31.7486,-58.8499,-375.455:0:0:15:.:.:1:.:.:.:-0.0106314	0/0:100.507:34:1:34:5:164:-314.374,-337.936,-1121.13:5:17:30:.:.:.:.:.:.:-0.02803
chr21	45056149	.	GAAAAA	G	3319.47	PASS	SOMATIC;NS=2;DP=49;DPB=415.632;AC=2;AN=3;AF=0.25;RO=7;AO=19;PRO=204.333;PAO=235.667;QR=261;QA=645;PQR=7560.92;PQA=8119.58;SRF=7;SRR=0;SAF=19;SAR=0;SRP=18.2106;SAP=44.2683;AB=0.558824;ABP=4.03217;RUN=1;RPP=4.03889;RPPR=3.32051;RPL=11.0;RPR=8.0;EPP=4.03889;EPPR=3.32051;DPRA=0.0;ODDS=23.1436;GTI=0;TYPE=del;CIGAR=65M5D25M;NUMALT=3;MEANALT=7.0;LEN=5;MQM=59.1579;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=45056154;HOMLEN=1;HOMSEQ=A;SVLEN=-5;SVTYPE=DEL;BaseQRankSum=-0.024;FS=4.832;MLEAC=1;MLEAF=0.5;MQ=61.4;MQRankSum=4.489;QD=11.47;RPA=6,1;RU=A;ReadPosRankSum=-0.71;SOR=1.078;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.033:15:6:227:0:0:-31.7486,-108.352,-988.121:0:0:15:.:.:.:.:1:.:.:.:-0.0106314	0/1:99.7535:231:1:34:19:645:-314.374,-11.043,-1673.34:63:47:205:183,130:8275,0,8544:.:1:1:1:.:.:-0.02803
chr22	21337415	.	C	G	9713.54	REJECT	NS=2;DP=260;DPB=291.0;AC=4;AN=4;AF=1.0;RO=0;AO=290;PRO=0.0;PAO=0.0;QR=0;QA=11102;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=92;SAR=198;SRP=0.0;SAP=87.1436;AB=0.0;ABP=0.0;RUN=1;RPP=145.609;RPPR=0.0;RPL=214.0;RPR=76.0;EPP=5.43636;EPPR=0.0;DPRA=0.0;ODDS=42.3625;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.835;SOR=2.286	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:61:0:0:61:2288:-206.078,-16.5227,0.0:60:100:60:0,60:2496,179,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:229:0:0:229:8814:-792.885,-62.0373,0.0:229:100:229:0,229:9865,683,0:.:1:1:.:.:.:-0.068504
chr22	21340088	.	T	C	3462.87	REJECT	NS=2;DP=221;DPB=253.0;AC=2;AN=4;AF=0.5;RO=127;AO=123;PRO=0.0;PAO=0.0;QR=4800;QA=4760;PQR=0.0;PQA=0.0;SRF=90;SRR=37;SAF=79;SAR=44;SRP=51.0392;SAP=24.6368;AB=0.486166;ABP=3.43086;RUN=1;RPP=68.7018;RPPR=29.0167;RPL=31.0;RPR=92.0;EPP=3.16919;EPPR=3.84811;DPRA=0.0;ODDS=189.882;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.633;Dels=0.0;FS=3.981;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.146;QD=17.645;ReadPosRankSum=0.2165;SOR=0.542;ClippingRankSum=-0.462	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.532:63:34:1248:29:1133:-84.9869,0.0,-95.325:29:46:63:34,29:1083,0,1189:1:.:1:.:.:.:-0.0124524	0/1:120.532:189:93:3552:94:3627:-276.031,0.0,-268.898:94:50:187:93,94:3534,0,3411:.:1:1:.:.:.:-0.068504
chr22	21343965	.	GGAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	G	1600.69	REJECT	NS=2;DP=190;DPB=240.103;AC=1;AN=3;AF=0.0;RO=48;AO=51;PRO=71.0;PAO=3.0;QR=1781;QA=1345;PQR=2555.75;PQA=108.75;SRF=13;SRR=35;SAF=16;SAR=35;SRP=24.906;SAP=18.3809;AB=0.268421;ABP=91.5149;RUN=1;RPP=113.755;RPPR=29.068;RPL=0.0;RPR=51.0;EPP=18.3809;EPPR=11.8771;DPRA=0.0;ODDS=1.44437;GTI=0;TYPE=del;CIGAR=1M37D1M;NUMALT=3;MEANALT=6.0;LEN=37;MQM=60.1569;MQMR=60.0;PAIRED=1.0;PAIREDR=0.979167;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.355:53:29:1083:9:242:-39.9984,-56.9632,-458.882:9:18:50:.:.:1:.:.:.:-0.0124524	0/0:7.19264:137:19:698:42:1103:-148.973,-159.917,-1180.95:42:32:133:.:.:.:.:.:.:-0.068504
chr22	21343995	.	CGCAGGTA	TGCAGGTG	1600.69	REJECT	NS=2;DP=190;DPB=240.103;AC=2;AN=3;AF=0.5;RO=48;AO=55;PRO=71.0;PAO=62.0;QR=1781;QA=1928;PQR=2555.75;PQA=2232.75;SRF=13;SRR=35;SAF=31;SAR=24;SRP=24.906;SAP=4.94488;AB=0.289474;ABP=76.1546;RUN=1;RPP=122.441;RPPR=29.068;RPL=55.0;RPR=0.0;EPP=4.94488;EPPR=11.8771;DPRA=0.0;ODDS=1.44437;GTI=0;TYPE=complex;CIGAR=30M1X6M1X1M;NUMALT=3;MEANALT=6.0;LEN=39;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.979167;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:140.355:53:29:1083:12:431:-39.9984,0.0,-146.424:12:24:50:.:.:1:.:.:.:-0.0124524	./1:7.19264:137:19:698:43:1497:-148.973,-8.44274,-146.235:43:32:133:.:.:1:.:.:.:-0.068504
chr22	21344002	.	A	G	1600.69	PASS	SOMATIC;NS=2;DP=190;DPB=240.103;AC=2;AN=2;AF=0.25;RO=48;AO=29;PRO=71.0;PAO=54.0;QR=1781;QA=1082;PQR=2555.75;PQA=1958.75;SRF=13;SRR=35;SAF=11;SAR=18;SRP=24.906;SAP=6.67934;AB=0.211679;ABP=101.931;RUN=1;RPP=57.5966;RPPR=29.068;RPL=28.0;RPR=1.0;EPP=9.07545;EPPR=11.8771;DPRA=0.0;ODDS=1.44437;GTI=0;TYPE=snp;CIGAR=37M1X1M;NUMALT=3;MEANALT=7.0;LEN=1;MQM=59.069;MQMR=60.0;PAIRED=1.0;PAIREDR=0.979167;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:140.355:53:29:1083:0:0:-39.9984,-50.3005,-165.956:0:0:50:.:.:1:.:.:.:-0.0124524	./1:7.19264:137:19:698:29:1082:-148.973,-67.0718,-139.987:29:22:133:.:.:1:.:.:.:-0.068504
chr22	21346485	.	T	C	5846.57	REJECT	NS=2;DP=223;DPB=262.0;AC=2;AN=4;AF=0.5;RO=64;AO=198;PRO=0.0;PAO=0.0;QR=2404;QA=7558;PQR=0.0;PQA=0.0;SRF=46;SRR=18;SAF=146;SAR=52;SRP=29.6108;SAP=99.915;AB=0.755725;ABP=151.831;RUN=1;RPP=80.3937;RPPR=29.6108;RPL=57.0;RPR=141.0;EPP=7.39711;EPPR=3.0103;DPRA=0.0;ODDS=44.6686;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994949;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.646;Dels=0.0;FS=1.1135;HaplotypeScore=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.214;QD=24.885;ReadPosRankSum=0.0215;SOR=1.0175;ClippingRankSum=0.149	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:43:1614:35:1350:-100.426,0.0,-124.18:34:44:77:43,34:1202,0,1489:1:.:1:.:.:.:-0.0124524	0/1:129.501:184:21:790:163:6208:-508.692,0.0,-21.2425:163:89:184:21,163:6382,0,328:.:1:1:.:.:.:-0.068504
chr22	21400282	.	G	C	2025.765	REJECT	NS=2;DP=351;DPB=405.0;AC=2;AN=4;AF=0.5;RO=309;AO=96;PRO=0.0;PAO=0.0;QR=11730;QA=3710;PQR=0.0;PQA=0.0;SRF=176;SRR=133;SAF=46;SAR=50;SRP=16.004;SAP=3.37221;AB=0.237037;ABP=246.263;RUN=1;RPP=7.44372;RPPR=29.1593;RPL=41.0;RPR=55.0;EPP=10.339;EPPR=6.10939;DPRA=0.0;ODDS=149.747;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996764;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.9785;Dels=0.0;FS=6.7795;HaplotypeScore=2.9572;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2525;QD=10.32;ReadPosRankSum=-0.041;SOR=0.5925;ClippingRankSum=-0.146	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:107:53:1974:54:2075:-157.785,0.0,-148.682:54:50:107:53,54:1902,0,1755:1:.:1:.:.:.:-0.0124524	0/1:129.501:297:256:9756:42:1635:-66.7688,0.0,-796.799:42:14:297:255,42:959,0,9963:.:1:1:.:.:.:-0.068504
chr22	21403869	.	GG	AA	9299.85	REJECT	NS=2;DP=286;DPB=317.0;AC=4;AN=4;AF=1.0;RO=0;AO=315;PRO=0.0;PAO=2.0;QR=0;QA=11355;PQR=0.0;PQA=74.0;SRF=0;SRR=0;SAF=219;SAR=96;SRP=0.0;SAP=107.303;AB=0.0;ABP=0.0;RUN=1;RPP=4.56135;RPPR=0.0;RPL=150.0;RPR=165.0;EPP=48.239;EPPR=0.0;DPRA=0.0;ODDS=47.8254;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.5;LEN=2;MQM=44.4889;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=12;JOINED;Dels=0.0;FS=0.0;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.0;MQ=46.76;QD=27.255;SOR=1.94	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:73:0:0:71:2511:-209.347,-18.8952,0.0:73:100:73:0,75:3335,226,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:251:0:0:244:8844:-740.071,-65.0664,0.0:249:100:250:1,255:9505,677,0:.:1:1:.:.:.:-0.068504
chr22	21403912	.	G	T	12458.9	REJECT	NS=2;DP=364;DPB=398.0;AC=4;AN=4;AF=1.0;RO=0;AO=398;PRO=0.0;PAO=0.0;QR=0;QA=15238;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=230;SAR=168;SRP=0.0;SAP=23.983;AB=0.0;ABP=0.0;RUN=1;RPP=25.3579;RPPR=0.0;RPL=167.0;RPR=231.0;EPP=3.79596;EPPR=0.0;DPRA=0.0;ODDS=54.0512;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=42.5729;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=13;Dels=0.0;FS=0.0;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.0;MQ=43.71;QD=27.97;SOR=1.1355	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.0865:78:0:0:81:3081:-252.531,-21.5991,0.0:78:100:78:0,76:3175,228,0:1:.:1:.:.:.:-0.0124524	1/1:125.0865:323:0:0:317:12157:-1001.97,-84.409,0.0:323:100:323:0,330:12790,903,0:.:1:1:.:.:.:-0.068504
chr22	21403971	.	C	A	15621.2	REJECT	NS=2;DP=421;DPB=469.0;AC=4;AN=4;AF=1.0;RO=0;AO=468;PRO=0.0;PAO=0.0;QR=0;QA=17903;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=262;SAR=206;SRP=0.0;SAP=17.561;AB=0.0;ABP=0.0;RUN=1;RPP=3.02886;RPPR=0.0;RPL=233.0;RPR=235.0;EPP=3.47429;EPPR=0.0;DPRA=0.0;ODDS=62.1767;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=53.1068;MQMR=0.0;PAIRED=0.99359;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=9.7984;MLEAC=2;MLEAF=1.0;MQ=54.02;QD=33.0;SOR=1.0535	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:124.3525:92:0:0:93:3531:-306.286,-25.128,0.0:92:100:92:0,91:3775,274,0:1:.:1:.:.:.:-0.0124524	1/1:124.3525:374:0:0:375:14372:-1261.63,-101.282,0.0:374:100:374:0,374:15788,1105,0:.:1:1:.:.:.:-0.068504
chr22	21404113	.	A	G	2126.54	REJECT	NS=2;DP=355;DPB=411.0;AC=2;AN=4;AF=0.5;RO=311;AO=100;PRO=0.0;PAO=0.0;QR=12040;QA=3862;PQR=0.0;PQA=0.0;SRF=140;SRR=171;SAF=39;SAR=61;SRP=9.72022;SAP=13.5202;AB=0.243309;ABP=238.232;RUN=1;RPP=13.5202;RPPR=13.6303;RPL=61.0;RPR=39.0;EPP=6.13722;EPPR=28.9912;DPRA=0.0;ODDS=151.365;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.5035;Dels=0.0;FS=2.7055;HaplotypeScore=4.8814;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.547;QD=10.49;ReadPosRankSum=0.0715;SOR=0.9675;ClippingRankSum=-0.601	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:110:54:2095:57:2209:-168.726,0.0,-158.46:56:51:110:54,56:2000,0,1822:1:.:1:.:.:.:-0.0124524	0/1:129.501:300:257:9945:43:1653:-67.4111,0.0,-813.255:43:14:300:257,43:943,0,10235:.:1:1:.:.:.:-0.068504
chr22	24029646	.	T	G	6712.0650000000005	REJECT	NS=2;DP=393;DPB=448.0;AC=2;AN=4;AF=0.5;RO=215;AO=233;PRO=0.0;PAO=0.0;QR=7953;QA=8950;PQR=0.0;PQA=0.0;SRF=100;SRR=115;SAF=113;SAR=120;SRP=5.28277;SAP=3.46696;AB=0.520089;ABP=4.58074;RUN=1;RPP=14.4268;RPPR=4.71718;RPL=134.0;RPR=99.0;EPP=14.4268;EPPR=15.3826;DPRA=0.0;ODDS=341.204;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995708;PAIREDR=0.995349;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.8375;Dels=0.0;FS=1.2005;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.0155;QD=18.4;ReadPosRankSum=-0.0635;SOR=0.731;ClippingRankSum=-0.676	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.508:105:53:1962:55:2077:-157.68,0.0,-147.366:53:50:105:51,52:1792,0,1700:1:.:1:.:.:.:-0.0124524	0/1:119.508:339:162:5991:178:6873:-526.131,0.0,-446.811:178:52:339:161,178:6699,0,5616:.:1:1:.:.:.:-0.068504
chr22	24030367	.	A	G	8828.12	REJECT	NS=2;DP=358;DPB=413.0;AC=2;AN=4;AF=0.5;RO=119;AO=294;PRO=0.0;PAO=0.0;QR=4470;QA=11149;PQR=0.0;PQA=0.0;SRF=53;SRR=66;SAF=139;SAR=155;SRP=6.09416;SAP=4.90111;AB=0.711864;ABP=164.03;RUN=1;RPP=6.5851;RPPR=6.09416;RPL=136.0;RPR=158.0;EPP=17.3095;EPPR=7.11603;DPRA=0.0;ODDS=222.004;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989796;PAIREDR=0.991597;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.031;Dels=0.0;FS=6.191;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.029;QD=22.51;ReadPosRankSum=0.9245;SOR=0.642;ClippingRankSum=-0.324	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:108:67:2484:42:1621:-116.39,0.0,-194.036:41:38:108:66,41:1454,0,2388:1:.:1:.:.:.:-0.0124524	0/1:129.501:303:52:1986:252:9528:-774.696,0.0,-96.7296:251:83:303:52,251:9671,0,1327:.:1:1:.:.:.:-0.068504
chr22	24030799	.	T	C	10507.8	REJECT	NS=2;DP=364;DPB=413.0;AC=2;AN=4;AF=0.5;RO=71;AO=342;PRO=0.0;PAO=0.0;QR=2693;QA=13001;PQR=0.0;PQA=0.0;SRF=43;SRR=28;SAF=182;SAR=160;SRP=9.89173;SAP=6.08338;AB=0.828087;ABP=389.149;RUN=1;RPP=3.64523;RPPR=14.0512;RPL=166.0;RPR=176.0;EPP=4.25477;EPPR=3.04088;DPRA=0.0;ODDS=45.7636;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.1825;Dels=0.0;FS=1.6355;HaplotypeScore=7.8207;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.034;QD=26.555;ReadPosRankSum=1.492;SOR=0.4955;ClippingRankSum=-1.296	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.061:95:40:1506:57:2173:-169.324,0.0,-109.283:55:58:95:39,54:1910,0,1351:1:.:1:.:.:.:-0.0124524	0/1:119.061:316:31:1187:285:10828:-888.344,0.0,-21.2596:285:90:316:31,285:11180,0,384:.:1:1:.:.:.:-0.068504
chr22	24031712	.	G	T	5883.085	REJECT	NS=2;DP=364;DPB=420.0;AC=2;AN=4;AF=0.5;RO=204;AO=216;PRO=0.0;PAO=0.0;QR=7888;QA=8184;PQR=0.0;PQA=0.0;SRF=80;SRR=124;SAF=103;SAR=113;SRP=23.618;SAP=4.01561;AB=0.514286;ABP=3.7548;RUN=1;RPP=5.5839;RPPR=12.5903;RPL=100.0;RPR=116.0;EPP=3.05051;EPPR=12.5903;DPRA=0.0;ODDS=311.488;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.99537;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3535;Dels=0.0;FS=6.188;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.225;QD=18.725;ReadPosRankSum=0.036;SOR=0.5045;ClippingRankSum=-1.502	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.198:108:48:1848:63:2317:-178.478,0.0,-136.266:62:57:108:45,61:2094,0,1517:1:.:1:.:.:.:-0.0124524	0/1:122.198:309:156:6040:153:5867:-444.021,0.0,-459.572:153:50:309:156,153:5634,0,5842:.:1:1:.:.:.:-0.068504
chr22	24143502	.	C	G	11464.05	REJECT	NS=2;DP=307;DPB=355.0;AC=4;AN=4;AF=1.0;RO=0;AO=355;PRO=0.0;PAO=0.0;QR=0;QA=13378;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=157;SAR=198;SRP=0.0;SAP=13.2927;AB=0.0;ABP=0.0;RUN=1;RPP=20.1925;RPPR=0.0;RPL=204.0;RPR=151.0;EPP=3.50576;EPPR=0.0;DPRA=0.0;ODDS=63.5606;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.994366;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7642;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.7;SOR=0.8955	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.824:92:0:0:95:3542:-318.841,-25.729,0.0:92:100:92:0,90:3652,270,0:1:.:1:.:.:.:-0.0124524	1/1:123.824:260:0:0:260:9836:-884.71,-70.3574,0.0:260:100:260:0,260:10990,765,0:.:1:1:.:.:.:-0.068504
chr22	24270585	.	G	A	11474.349999999999	REJECT	NS=2;DP=304;DPB=352.0;AC=4;AN=4;AF=1.0;RO=0;AO=352;PRO=0.0;PAO=0.0;QR=0;QA=13424;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=214;SAR=138;SRP=0.0;SAP=38.6422;AB=0.0;ABP=0.0;RUN=1;RPP=31.5356;RPPR=0.0;RPL=142.0;RPR=210.0;EPP=11.0053;EPPR=0.0;DPRA=0.0;ODDS=63.5819;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997159;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8799;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=26.46;SOR=1.1535	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.371:95:0:0:95:3587:-322.898,-25.7382,0.0:95:100:95:0,95:3895,285,0:1:.:1:.:.:.:-0.0124524	1/1:125.371:257:0:0:257:9837:-884.85,-69.6053,0.0:257:100:257:0,257:11013,765,0:.:1:1:.:.:.:-0.068504
chr22	24270732	.	GG	CA	12515.55	REJECT	NS=2;DP=327;DPB=375.0;AC=4;AN=4;AF=1.0;RO=0;AO=370;PRO=0.0;PAO=10.0;QR=0;QA=13990;PQR=0.0;PQA=360.0;SRF=0;SRR=0;SAF=162;SAR=208;SRP=0.0;SAP=15.4288;AB=0.0;ABP=0.0;RUN=1;RPP=11.4849;RPPR=0.0;RPL=204.0;RPR=166.0;EPP=4.16059;EPPR=0.0;DPRA=0.0;ODDS=61.694;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=59.9135;MQMR=0.0;PAIRED=0.994595;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;JOINED;Dels=0.0;FS=0.0;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.0;MQ=59.96;QD=29.525;SOR=1.0025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:0:0:87:3274:-310.215,-24.9183,0.0:95:100:95:0,103:4586,310,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:284:0:0:283:10716:-980.661,-77.9825,0.0:284:100:284:0,285:12214,852,0:.:1:1:.:.:.:-0.068504
chr22	24270777	.	C	T	11367.55	REJECT	NS=2;DP=303;DPB=345.0;AC=4;AN=4;AF=1.0;RO=1;AO=344;PRO=0.0;PAO=0.0;QR=16;QA=13129;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=109;SAR=235;SRP=5.18177;SAP=103.226;AB=0.0;ABP=0.0;RUN=1;RPP=9.47422;RPPR=5.18177;RPL=188.0;RPR=156.0;EPP=18.7913;EPPR=5.18177;DPRA=0.0;ODDS=54.908;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997093;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.69;Dels=0.0;FS=0.0;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-1.19;QD=33.365;ReadPosRankSum=-0.772;SOR=1.2685;ClippingRankSum=-0.814	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.435:83:1:16:82:3153:-282.453,-21.0681,0.0:82:99:83:1,82:3442,240,0:1:.:1:.:.:.:-0.0124524	1/1:122.435:262:0:0:262:9976:-897.327,-70.9308,0.0:262:100:262:0,262:11122,771,0:.:1:1:.:.:.:-0.068504
chr22	24273325	.	TG	T	16242.0	REJECT	NS=2;DP=445;DPB=414.2;AC=4;AN=4;AF=1.0;RO=0;AO=499;PRO=14.0;PAO=19.0;QR=0;QA=18287;PQR=439.0;PQA=622.0;SRF=0;SRR=0;SAF=274;SAR=225;SRP=0.0;SAP=13.4586;AB=0.0;ABP=0.0;RUN=1;RPP=3.74573;RPPR=0.0;RPL=243.0;RPR=256.0;EPP=43.955;EPPR=0.0;DPRA=0.0;ODDS=84.1161;GTI=0;TYPE=del;CIGAR=1M1D3M;NUMALT=1;MEANALT=2.5;LEN=1;MQM=60.1583;MQMR=0.0;PAIRED=0.991984;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=24273326;HOMLEN=1;HOMSEQ=G;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.35;QD=31.655;RPA=2,1;RU=G;SOR=0.9825;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.3155:125:0:0:125:4645:-428.001,-34.6561,0.0:125:100:125:44,173:4663,376,0:1:.:1:1:.:.:-0.0124524	1/1:125.3155:382:0:0:374:13642:-1233.2,-101.662,0.0:378:100:378:130,496:16005,1138,0:.:1:1:1:.:.:-0.068504
chr22	29669693	.	T	C	4707.42	REJECT	NS=2;DP=185;DPB=211.0;AC=2;AN=4;AF=0.5;RO=50;AO=161;PRO=0.0;PAO=0.0;QR=1829;QA=6173;PQR=0.0;PQA=0.0;SRF=36;SRR=14;SAF=105;SAR=56;SRP=24.0302;SAP=35.3936;AB=0.763033;ABP=129.81;RUN=1;RPP=169.189;RPPR=47.4821;RPL=25.0;RPR=136.0;EPP=10.1451;EPPR=5.78978;DPRA=0.0;ODDS=97.1079;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.102;Dels=0.0;FS=3.8395;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.1045;QD=26.08;ReadPosRankSum=1.1885;SOR=0.5435;ClippingRankSum=-1.015	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:50:24:830:27:1056:-81.7227,0.0,-60.9536:27:54:50:22,27:999,0,736:1:.:1:.:.:.:-0.0124524	0/1:129.501:160:26:999:134:5117:-417.045,0.0,-46.5625:134:84:160:26,134:5204,0,653:.:1:1:.:.:.:-0.068504
chr22	29674493	.	TG	T	4257.2	REJECT	NS=2;DP=133;DPB=134.143;AC=4;AN=4;AF=1.0;RO=0;AO=145;PRO=8.5;PAO=12.5;QR=0;QA=5183;PQR=299.5;PQA=422.5;SRF=0;SRR=0;SAF=2;SAR=143;SRP=0.0;SAP=300.742;AB=0.0;ABP=0.0;RUN=1;RPP=51.6663;RPPR=0.0;RPL=101.0;RPR=44.0;EPP=51.6663;EPPR=0.0;DPRA=0.0;ODDS=28.5628;GTI=0;TYPE=del;CIGAR=1M1D5M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=59.7793;MQMR=0.0;PAIRED=0.993103;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.035;QD=31.645;RPA=3,2;RU=G;SOR=7.291;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:111.503:39:0:0:39:1373:-123.728,-10.5296,0.0:39:100:39:0,39:1391,117,0:1:.:1:.:.:.:-0.0124524	1/1:121.6395:113:0:0:106:3810:-353.908,-29.7342,0.0:108:100:108:0,111:4488,334,0:.:1:1:.:.:.:-0.068504
chr22	29674528	.	T	A	3357.09	REJECT	NS=2;DP=103;DPB=116.0;AC=4;AN=4;AF=1.0;RO=0;AO=116;PRO=0.0;PAO=0.0;QR=0;QA=4202;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=3;SAR=113;SRP=0.0;SAP=229.517;AB=0.0;ABP=0.0;RUN=1;RPP=32.9616;RPPR=0.0;RPL=78.0;RPR=38.0;EPP=36.0317;EPPR=0.0;DPRA=0.0;ODDS=19.6333;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.0948;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=2.8936;MLEAC=2;MLEAF=1.0;MQ=58.975;QD=29.975;SOR=6.6495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:83.1332:25:0:0:26:912:-78.4363,-6.65157,0.0:25:100:25:0,25:1169,81,0:1:.:1:.:.:.:-0.0124524	1/1:127.701:90:0:0:90:3290:-295.429,-24.3705,0.0:90:100:90:0,90:3749,271,0:.:1:1:.:.:.:-0.068504
chr22	29674534	.	G	C	3043.77	PASS	SOMATIC;DP=73;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;Dels=0.0;FS=0.0;HaplotypeScore=2.9108;MLEAC=2;MLEAF=1.0;MQ=57.83;QD=34.48;SOR=6.358	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0124524	1/1:0,73:73:99.0:3072,217,0:73:100:73:.:1:.:.:.:.:-0.068504
chr22	29674534	.	GG	CA	2521.9	REJECT	NS=2;DP=89;DPB=89.5;AC=4;AN=4;AF=1.0;RO=0;AO=89;PRO=0.0;PAO=1.0;QR=0;QA=3101;PQR=0.0;PQA=35.0;SRF=0;SRR=0;SAF=3;SAR=86;SRP=0.0;SAP=171.092;AB=0.0;ABP=0.0;RUN=1;RPP=10.0615;RPPR=0.0;RPL=53.0;RPR=36.0;EPP=11.8182;EPPR=0.0;DPRA=0.0;ODDS=13.988;GTI=0;TYPE=mnp;CIGAR=2X;NUMALT=1;MEANALT=1.0;LEN=2;MQM=56.8539;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;JOINED;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=56.5;QD=32.45;SOR=4.892	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:64.87465:20:0:0:17:561:-46.9864,-4.19987,0.0:20:100:20:0,23:1035,69,0:1:.:1:.:.:.:-0.0124524	1/1:144.894:72:0:0:72:2540:-230.667,-19.7296,0.0:72:100:72:.:.:.:.:1:.:.:.:-0.068504
chr22	29674535	.	G	A	2911.77	PASS	SOMATIC;DP=73;AC=2;AN=4;AF=1.0;MQ0=0;ALERT;Dels=0.0;FS=0.0;HaplotypeScore=2.8603;MLEAC=2;MLEAF=1.0;MQ=57.83;QD=29.83;SOR=6.358	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:.:.:.:-0.0124524	1/1:0,73:73:99.0:2940,211,0:73:100:73:.:1:.:.:.:.:-0.068504
chr22	29674813	.	C	CA	98.5048	REJECT	NS=2;DP=70;DPB=98.8148;AC=2;AN=2;AF=0.0;RO=43;AO=4;PRO=21.9167;PAO=19.9167;QR=1511;QA=148;PQR=711.167;PQA=625.167;SRF=41;SRR=2;SAF=4;SAR=0;SRP=79.8198;SAP=11.6962;AB=0.0571429;ABP=122.255;RUN=1;RPP=3.0103;RPPR=9.12072;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=14.3727;DPRA=0.0;ODDS=10.6593;GTI=0;TYPE=ins;CIGAR=1M1I26M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:46.2333:19:12:427:2:75:-8.73688,-6.04486,-43.0987:2:11:18:.:.:1:.:.:.:-0.0124524	./1:53.9573:51:31:1084:2:73:-9.86788,-11.6123,-106.06:2:5:44:.:.:1:.:.:.:-0.068504
chr22	29674813	.	CA	C	98.5048	REJECT	NS=2;DP=70;DPB=98.8148;AC=2;AN=4;AF=0.5;RO=43;AO=11;PRO=21.9167;PAO=19.9167;QR=1511;QA=354;PQR=711.167;PQA=636.167;SRF=41;SRR=2;SAF=11;SAR=0;SRP=79.8198;SAP=26.8965;AB=0.157143;ABP=74.4828;RUN=1;RPP=12.6832;RPPR=9.12072;RPL=2.0;RPR=9.0;EPP=12.6832;EPPR=14.3727;DPRA=0.0;ODDS=10.6593;GTI=0;TYPE=del;CIGAR=1M1D25M;NUMALT=3;MEANALT=6.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:46.2333:19:12:427:4:124:-8.73688,0.0,-36.2413:4:22:18:.:.:1:.:.:.:-0.0124524	0/1:53.9573:51:31:1084:7:230:-9.86788,0.0,-93.3635:7:16:44:.:.:1:.:.:.:-0.068504
chr22	29674827	.	T	A	98.5048	REJECT	NS=2;DP=70;DPB=98.8148;AC=2;AN=2;AF=0.0;RO=43;AO=4;PRO=21.9167;PAO=12.25;QR=1511;QA=76;PQR=711.167;PQA=371.5;SRF=41;SRR=2;SAF=4;SAR=0;SRP=79.8198;SAP=11.6962;AB=0.0784314;ABP=81.7368;RUN=1;RPP=3.0103;RPPR=9.12072;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=14.3727;DPRA=0.0;ODDS=10.6593;GTI=0;TYPE=snp;CIGAR=14M1X12M;NUMALT=3;MEANALT=9.0;LEN=1;MQM=55.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:46.2333:19:12:427:0:0:-8.73688,-17.1534,-108.308:0:0:18:.:.:1:.:.:.:-0.0124524	./1:53.9573:51:31:1084:4:76:-9.86788,-24.4367,-241.531:4:9:44:.:.:1:.:.:.:-0.068504
chr22	29674983	.	C	CA	527.915	REJECT	NS=2;DP=273;DPB=366.0;AC=2;AN=2;AF=0.0;RO=131;AO=34;PRO=49.6333;PAO=51.1333;QR=4713;QA=1017;PQR=1748.12;PQA=1779.12;SRF=74;SRR=57;SAF=16;SAR=18;SRP=7.8008;SAP=3.26577;AB=0.124542;ABP=337.282;RUN=1;RPP=19.3602;RPPR=42.8096;RPL=9.0;RPR=25.0;EPP=3.0103;EPPR=4.35297;DPRA=0.0;ODDS=7.70733;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2721:68:31:1108:5:165:-8.50656,-3.94919,-100.086:5:9:55:.:.:1:.:.:.:-0.0124524	./1:33.4749:205:100:3605:29:852:-52.0359,-2.31829,-304.525:29:17:174:.:.:1:.:.:.:-0.068504
chr22	29674983	.	CA	C	527.915	REJECT	NS=2;DP=273;DPB=366.0;AC=2;AN=4;AF=0.5;RO=131;AO=38;PRO=49.6333;PAO=44.1333;QR=4713;QA=1292;PQR=1748.12;PQA=1556.87;SRF=74;SRR=57;SAF=28;SAR=10;SRP=7.8008;SAP=21.525;AB=0.139194;ABP=311.701;RUN=1;RPP=11.239;RPPR=42.8096;RPL=13.0;RPR=25.0;EPP=3.9246;EPPR=4.35297;DPRA=0.0;ODDS=7.70733;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40.2721:68:31:1108:8:242:-8.50656,0.0,-119.114:8:15:55:.:.:1:.:.:.:-0.0124524	0/1:33.4749:205:100:3605:30:1050:-52.0359,0.0,-391.201:30:17:174:.:.:1:.:.:.:-0.068504
chr22	29674998	.	GT	AGG	527.915	REJECT	NS=2;DP=273;DPB=366.0;AC=2;AN=2;AF=0.0;RO=131;AO=8;PRO=49.6333;PAO=18.3;QR=4713;QA=120;PQR=1748.12;PQA=591.45;SRF=74;SRR=57;SAF=8;SAR=0;SRP=7.8008;SAP=20.3821;AB=0.029304;ABP=528.371;RUN=1;RPP=7.35324;RPPR=42.8096;RPL=2.0;RPR=6.0;EPP=7.35324;EPPR=4.35297;DPRA=0.0;ODDS=7.70733;GTI=0;TYPE=complex;CIGAR=1M1I15M1X7M;NUMALT=4;MEANALT=19.5;LEN=25;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2721:68:31:1108:5:75:-8.50656,-24.5272,-276.568:5:9:55:.:.:1:.:.:.:-0.0124524	./1:33.4749:205:100:3605:3:45:-52.0359,-129.54,-1064.27:3:2:174:.:.:1:.:.:.:-0.068504
chr22	29674999	.	T	G	527.915	REJECT	NS=2;DP=273;DPB=366.0;AC=2;AN=2;AF=0.0;RO=131;AO=18;PRO=49.6333;PAO=23.8;QR=4713;QA=270;PQR=1748.12;PQA=723.45;SRF=74;SRR=57;SAF=18;SAR=0;SRP=7.8008;SAP=42.0968;AB=0.0659341;ABP=449.785;RUN=1;RPP=3.49285;RPPR=42.8096;RPL=10.0;RPR=8.0;EPP=3.49285;EPPR=4.35297;DPRA=0.0;ODDS=7.70733;GTI=0;TYPE=snp;CIGAR=16M1X7M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.2721:68:31:1108:6:90:-8.50656,-21.8243,-267.227:6:11:55:.:.:1:.:.:.:-0.0124524	./1:33.4749:205:100:3605:12:180:-52.0359,-113.616,-1034.67:12:7:174:.:.:1:.:.:.:-0.068504
chr22	29675401	.	A	G	14492.8	REJECT	NS=2;DP=527;DPB=596.0;AC=2;AN=4;AF=0.5;RO=124;AO=471;PRO=0.0;PAO=0.0;QR=4684;QA=17990;PQR=0.0;PQA=0.0;SRF=54;SRR=70;SAF=253;SAR=218;SRP=7.49334;SAP=8.65797;AB=0.790268;ABP=439.185;RUN=1;RPP=6.8876;RPPR=4.76149;RPL=250.0;RPR=221.0;EPP=4.04763;EPPR=11.486;DPRA=0.0;ODDS=156.445;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997877;PAIREDR=0.991935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.094;Dels=0.0;FS=2.5495;HaplotypeScore=4.8325;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5375;QD=25.99;ReadPosRankSum=0.391;SOR=0.6135;ClippingRankSum=1.448	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:124.066:135:67:2527:69:2567:-194.165,0.0,-190.59:69:51:134:64,69:2361,0,2211:1:.:1:.:.:.:-0.0124524	0/1:124.066:458:57:2157:402:15423:-1262.77,0.0,-69.7111:401:88:458:57,401:15861,0,1030:.:1:1:.:.:.:-0.068504
chr22	29675936	.	T	A	12315.6	REJECT	NS=2;DP=463;DPB=528.0;AC=2;AN=4;AF=0.5;RO=115;AO=413;PRO=0.0;PAO=0.0;QR=4306;QA=15363;PQR=0.0;PQA=0.0;SRF=51;SRR=64;SAF=200;SAR=213;SRP=6.20142;SAP=3.89887;AB=0.782197;ABP=368.229;RUN=1;RPP=11.0074;RPPR=5.29507;RPL=187.0;RPR=226.0;EPP=3.14175;EPPR=7.25883;DPRA=0.0;ODDS=199.874;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990315;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.7285;Dels=0.0;FS=3.2835;HaplotypeScore=2.8909;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.8005;QD=25.91;ReadPosRankSum=1.7505;SOR=0.7765;ClippingRankSum=-0.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.067:126:57:2123:71:2662:-204.883,0.0,-156.405:70:55:126:55,69:2443,0,1802:1:.:1:.:.:.:-0.0124524	0/1:118.067:399:58:2183:342:12701:-1034.1,0.0,-88.099:341:85:399:58,340:12902,0,1289:.:1:1:.:.:.:-0.068504
chr22	29676663	.	G	T	251.54	REJECT	NS=2;DP=205;DPB=295.625;AC=2;AN=2;AF=0.0;RO=114;AO=15;PRO=59.25;PAO=6.5;QR=4008;QA=270;PQR=2124.2;PQA=246.7;SRF=26;SRR=88;SAF=0;SAR=15;SRP=76.2308;SAP=35.5824;AB=0.0731707;ABP=327.407;RUN=1;RPP=3.15506;RPPR=10.6295;RPL=7.0;RPR=8.0;EPP=3.15506;EPPR=10.6295;DPRA=0.0;ODDS=24.269;GTI=0;TYPE=snp;CIGAR=1X23M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=58.8667;MQMR=59.2193;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.252:54:29:1006:1:14:-15.2691,-52.7714,-461.637:1:2:51:.:.:1:.:.:.:-0.0124524	./1:105.409:151:85:3002:14:256:-16.626,-107.909,-1313.35:14:10:135:.:.:1:.:.:.:-0.068504
chr22	29676663	.	G	GT	251.54	REJECT	NS=2;DP=205;DPB=295.625;AC=2;AN=4;AF=0.5;RO=114;AO=27;PRO=59.25;PAO=47.25;QR=4008;QA=663;PQR=2124.2;PQA=1594.2;SRF=26;SRR=88;SAF=9;SAR=18;SRP=76.2308;SAP=9.52472;AB=0.131707;ABP=244.531;RUN=1;RPP=12.7417;RPPR=10.6295;RPL=19.0;RPR=8.0;EPP=6.95112;EPPR=10.6295;DPRA=0.0;ODDS=24.269;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=59.4074;MQMR=59.2193;PAIRED=0.925926;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.187;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=0.31;QD=1.3;ReadPosRankSum=-0.237;SOR=0.956;ClippingRankSum=-1.26	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.126:50:29:1006:11:269:-15.2691,0.0,-100.328:12:26:49:33,14:135,0,603:1:.:1:.:.:.:-0.0124524	0/1:105.409:151:85:3002:16:394:-16.626,0.0,-281.033:16:12:135:.:.:.:.:1:.:.:.:-0.068504
chr22	29676663	.	GT	G	251.54	REJECT	NS=2;DP=205;DPB=295.625;AC=2;AN=2;AF=0.0;RO=114;AO=21;PRO=59.25;PAO=38.25;QR=4008;QA=506;PQR=2124.2;PQA=1345.2;SRF=26;SRR=88;SAF=6;SAR=15;SRP=76.2308;SAP=11.386;AB=0.102439;ABP=284.444;RUN=1;RPP=3.94093;RPPR=10.6295;RPL=9.0;RPR=12.0;EPP=15.5221;EPPR=10.6295;DPRA=0.0;ODDS=24.269;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=4;MEANALT=12.0;LEN=1;MQM=60.0;MQMR=59.2193;PAIRED=0.952381;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.252:54:29:1006:7:140:-15.2691,-11.5279,-124.818:7:14:51:.:.:1:.:.:.:-0.0124524	./1:105.409:151:85:3002:14:366:-16.626,-9.72742,-350.08:14:10:135:.:.:1:.:.:.:-0.068504
chr22	29676663	.	GTT	G	251.54	REJECT	NS=2;DP=205;DPB=295.625;AC=2;AN=2;AF=0.0;RO=114;AO=9;PRO=59.25;PAO=28.75;QR=4008;QA=180;PQR=2124.2;PQA=1041.7;SRF=26;SRR=88;SAF=1;SAR=8;SRP=76.2308;SAP=14.8328;AB=0.0439024;ABP=373.421;RUN=1;RPP=5.18177;RPPR=10.6295;RPL=3.0;RPR=6.0;EPP=9.04217;EPPR=10.6295;DPRA=0.0;ODDS=24.269;GTI=0;TYPE=del;CIGAR=1M2D21M;NUMALT=4;MEANALT=12.0;LEN=2;MQM=60.0;MQMR=59.2193;PAIRED=1.0;PAIREDR=0.982456;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:127.252:54:29:1006:3:45:-15.2691,-24.4988,-158.806:3:6:51:.:.:1:.:.:.:-0.0124524	./1:105.409:151:85:3002:6:135:-16.626,-46.1963,-479.39:6:4:135:.:.:1:.:.:.:-0.068504
chr22	29676695	.	T	A	3474.8450000000003	REJECT	NS=2;DP=180;DPB=215.0;AC=2;AN=4;AF=0.5;RO=45;AO=168;PRO=0.0;PAO=0.0;QR=1539;QA=4866;PQR=0.0;PQA=0.0;SRF=8;SRR=37;SAF=27;SAR=141;SRP=43.5927;SAP=170.989;AB=0.781395;ABP=150.883;RUN=1;RPP=28.0339;RPPR=13.8677;RPL=106.0;RPR=62.0;EPP=4.30284;EPPR=3.05855;DPRA=0.0;ODDS=2.3095;GTI=1;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=59.1786;MQMR=58.6667;PAIRED=0.982143;PAIREDR=0.977778;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.818;Dels=0.0;FS=0.939;HaplotypeScore=24.2801;MLEAC=1;MLEAF=0.5;MQ=59.495;MQRankSum=0.352;QD=18.15;ReadPosRankSum=-0.2935;SOR=1.09;ClippingRankSum=-1.12	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:57:31:1092:36:1023:-73.8266,0.0,-79.6964:29:52:56:23,23:656,0,731:1:.:1:.:.:.:-0.0124524	0/1:49.705603:146:14:447:132:3843:-306.276,0.0,-1.38382:131:90:145:14,130:3435,0,141:.:1:1:.:.:.:-0.068504
chr22	29677352	.	G	A	69.0039	REJECT	SOMATIC;NS=1;DP=3;DPB=3.0;AC=2;AN=4;AF=1.0;RO=0;AO=3;PRO=0.0;PAO=0.0;QR=0;QA=103;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=3;SAR=0;SRP=0.0;SAP=9.52472;AB=0.0;ABP=0.0;RUN=1;RPP=9.52472;RPPR=0.0;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=0.0;DPRA=0.0;ODDS=6.54477;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=24.87;SOR=2.303	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0124524	1/1:17.2147:2:0:0:3:103:-9.60904,-0.842357,0.0:2:100:2:0,2:77,6,0:.:1:1:.:.:.:-0.068504
chr22	29677357	.	CT	C	39.8779	REJECT	SOMATIC;NS=1;DP=2;DPB=1.33333;AC=2;AN=4;AF=1.0;RO=0;AO=2;PRO=0.0;PAO=0.0;QR=0;QA=61;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=2;SAR=0;SRP=0.0;SAP=7.35324;AB=0.0;ABP=0.0;RUN=1;RPP=7.35324;RPPR=0.0;RPL=2.0;RPR=0.0;EPP=7.35324;EPPR=0.0;DPRA=0.0;ODDS=5.91987;GTI=0;TYPE=del;CIGAR=1M1D1M;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.0;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0124524	1/1:25.5581:2:0:0:2:61:-5.79276,-0.570968,0.0:2:100:2:.:.:1:.:.:.:-0.068504
chr22	29677746	.	T	C	2689.01	REJECT	NS=2;DP=116;DPB=130.0;AC=2;AN=4;AF=0.5;RO=28;AO=102;PRO=0.0;PAO=0.0;QR=983;QA=3791;PQR=0.0;PQA=0.0;SRF=28;SRR=0;SAF=101;SAR=1;SRP=63.8115;SAP=215.9;AB=0.784615;ABP=94.4794;RUN=1;RPP=22.1704;RPPR=5.80219;RPL=36.0;RPR=66.0;EPP=24.8102;EPPR=5.80219;DPRA=0.0;ODDS=42.5205;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=58.9286;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.135;Dels=0.0;FS=0.0;HaplotypeScore=9.865;MLEAC=1;MLEAF=0.5;MQ=59.865;MQRankSum=-0.9285;QD=27.1;ReadPosRankSum=0.776;SOR=1.544;ClippingRankSum=0.638	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.031:31:12:443:20:768:-60.6153,0.0,-31.2735:20:65:31:10,20:768,0,298:1:.:1:.:.:.:-0.0124524	0/1:121.031:100:16:540:82:3023:-245.61,0.0,-22.3171:82:82:100:20,82:3041,0,453:.:1:1:.:.:.:-0.068504
chr22	29678749	.	C	T	564.18	REJECT	NS=2;DP=130;DPB=212.455;AC=2;AN=2;AF=0.0;RO=56;AO=17;PRO=55.1833;PAO=7.08333;QR=1961;QA=328;PQR=1933.27;PQA=215.017;SRF=17;SRR=39;SAF=0;SAR=17;SRP=21.778;SAP=39.9253;AB=0.130769;ABP=156.951;RUN=1;RPP=18.4661;RPPR=21.778;RPL=3.0;RPR=14.0;EPP=18.4661;EPPR=3.63072;DPRA=0.0;ODDS=22.1196;GTI=0;TYPE=snp;CIGAR=1X21M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=58.4118;MQMR=59.25;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:96.0257:29:12:416:3:46:-12.4154,-54.6459,-545.862:3:13:23:.:.:1:.:.:.:-0.0124524	./1:160.002:101:44:1545:14:282:-49.2868,-145.307,-1425.67:14:16:89:.:.:1:.:.:.:-0.068504
chr22	29678749	.	C	CT	564.18	REJECT	NS=2;DP=130;DPB=212.455;AC=2;AN=2;AF=0.0;RO=56;AO=12;PRO=55.1833;PAO=30.1833;QR=1961;QA=288;PQR=1933.27;PQA=1045.27;SRF=17;SRR=39;SAF=3;SAR=9;SRP=21.778;SAP=9.52472;AB=0.0923077;ABP=190.692;RUN=1;RPP=3.73412;RPPR=21.778;RPL=5.0;RPR=7.0;EPP=3.0103;EPPR=3.63072;DPRA=0.0;ODDS=22.1196;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=59.9167;MQMR=59.25;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:96.0257:29:12:416:2:43:-12.4154,-13.6927,-62.1568:2:9:23:.:.:1:.:.:.:-0.0124524	./1:160.002:101:44:1545:10:245:-49.2868,-45.2578,-229.993:10:11:89:.:.:1:.:.:.:-0.068504
chr22	29678749	.	CT	C	564.18	REJECT	NS=2;DP=130;DPB=212.455;AC=2;AN=4;AF=0.5;RO=56;AO=17;PRO=55.1833;PAO=31.6833;QR=1961;QA=459;PQR=1933.27;PQA=1094.27;SRF=17;SRR=39;SAF=5;SAR=12;SRP=21.778;SAP=9.26925;AB=0.130769;ABP=156.951;RUN=1;RPP=4.1599;RPPR=21.778;RPL=10.0;RPR=7.0;EPP=4.1599;EPPR=3.63072;DPRA=0.0;ODDS=22.1196;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=59.25;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:96.0257:29:12:416:3:76:-12.4154,0.0,-53.4145:3:13:23:.:.:1:.:.:.:-0.0124524	0/1:160.002:101:44:1545:14:383:-49.2868,0.0,-198.116:14:16:89:.:.:1:.:.:.:-0.068504
chr22	29678749	.	CTT	C	564.18	REJECT	NS=2;DP=130;DPB=212.455;AC=2;AN=2;AF=0.0;RO=56;AO=7;PRO=55.1833;PAO=27.4333;QR=1961;QA=157;PQR=1933.27;PQA=951.767;SRF=17;SRR=39;SAF=0;SAR=7;SRP=21.778;SAP=18.2106;AB=0.0538462;ABP=227.774;RUN=1;RPP=10.7656;RPPR=21.778;RPL=6.0;RPR=1.0;EPP=10.7656;EPPR=3.63072;DPRA=0.0;ODDS=22.1196;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=5;MEANALT=13.0;LEN=2;MQM=60.0;MQMR=59.25;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:96.0257:29:12:416:1:15:-12.4154,-17.5727,-85.2158:1:4:23:.:.:1:.:.:.:-0.0124524	./1:160.002:101:44:1545:6:142:-49.2868,-56.6018,-283.402:6:7:89:.:.:1:.:.:.:-0.068504
chr22	29678764	.	T	C	564.18	REJECT	NS=2;DP=130;DPB=212.455;AC=2;AN=2;AF=0.0;RO=56;AO=3;PRO=55.1833;PAO=27.4333;QR=1961;QA=112;PQR=1933.27;PQA=941.417;SRF=17;SRR=39;SAF=1;SAR=2;SRP=21.778;SAP=3.73412;AB=0.0230769;ABP=259.845;RUN=1;RPP=3.73412;RPPR=21.778;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=3.63072;DPRA=0.0;ODDS=22.1196;GTI=0;TYPE=snp;CIGAR=15M1X6M;NUMALT=5;MEANALT=13.0;LEN=1;MQM=60.0;MQMR=59.25;PAIRED=1.0;PAIREDR=0.964286;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:96.0257:29:12:416:2:73:-12.4154,-9.49567,-169.425:2:9:23:.:.:1:.:.:.:-0.0124524	./1:160.002:101:44:1545:1:39:-49.2868,-46.124,-450.527:1:1:89:.:.:1:.:.:.:-0.068504
chr22	29679683	.	AT	A	57.0504	REJECT	NS=2;DP=4;DPB=6.0;AC=3;AN=3;AF=0.75;RO=0;AO=3;PRO=2.16667;PAO=1.66667;QR=0;QA=106;PQR=75.3333;PQA=56.3333;SRF=0;SRR=0;SAF=0;SAR=3;SRP=0.0;SAP=9.52472;AB=0.666667;ABP=3.73412;RUN=1;RPP=3.73412;RPPR=0.0;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=0.0;DPRA=0.0;ODDS=0.218731;GTI=1;TYPE=del;CIGAR=1M1D23M;NUMALT=2;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.666667;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:13.9953:3:0:0:2:66:-6.15598,-1.19504,-7.07497:2:67:3:.:.:1:.:.:.:-0.0124524	1/1:2.16381:1:0:0:1:40:-3.67594,-0.276907,0.0:1:100:1:.:.:1:.:.:.:-0.068504
chr22	29679703	.	A	T	57.0504	REJECT	NS=2;DP=4;DPB=6.0;AC=1;AN=3;AF=0.25;RO=0;AO=1;PRO=2.16667;PAO=2.16667;QR=0;QA=16;PQR=75.3333;PQA=75.3333;SRF=0;SRR=0;SAF=0;SAR=1;SRP=0.0;SAP=5.18177;AB=0.333333;ABP=3.73412;RUN=1;RPP=5.18177;RPPR=0.0;RPL=1.0;RPR=0.0;EPP=5.18177;EPPR=0.0;DPRA=3.0;ODDS=0.218731;GTI=1;TYPE=snp;CIGAR=20M1X4M;NUMALT=2;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:13.9953:3:0:0:1:16:-6.15598,-4.96094,-4.69416:1:33:3:.:.:1:.:.:.:-0.0124524	0/0:2.16381:1:0:0:0:0:-3.67594,-3.67594,-3.67594:0:0:1:.:.:.:.:.:.:-0.068504
chr22	29681216	.	A	G	277.342	REJECT	NS=2;DP=46;DPB=54.0;AC=2;AN=4;AF=0.5;RO=40;AO=14;PRO=0.0;PAO=0.0;QR=1503;QA=541;PQR=0.0;PQA=0.0;SRF=38;SRR=2;SAF=12;SAR=2;SRP=73.366;SAP=18.5208;AB=0.259259;ABP=30.1939;RUN=1;RPP=8.59409;RPPR=4.96463;RPL=10.0;RPR=4.0;EPP=3.63072;EPPR=4.96463;DPRA=0.0;ODDS=10.0683;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.95;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.26;Dels=0.0;FS=1.568;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0655;QD=11.665;ReadPosRankSum=0.1275;SOR=0.198;ClippingRankSum=1.473	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.483:15:6:222:9:356:-28.1515,0.0,-16.0194:9:60:15:6,9:354,0,205:1:.:1:.:.:.:-0.0124524	0/1:67.36315:39:34:1281:5:185:-6.08997,0.0,-104.932:5:13:39:34,5:91,0,1326:.:1:1:.:.:.:-0.068504
chr22	29682675	.	CA	C	186.06	REJECT	NS=2;DP=78;DPB=169.868;AC=2;AN=3;AF=0.5;RO=8;AO=5;PRO=51.4583;PAO=50.7917;QR=278;QA=148;PQR=1783.75;PQA=1695.75;SRF=7;SRR=1;SAF=4;SAR=1;SRP=12.7819;SAP=6.91895;AB=0.0641026;ABP=131.74;RUN=1;RPP=3.44459;RPPR=7.35324;RPL=2.0;RPR=3.0;EPP=3.44459;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=del;CIGAR=1M1D36M;NUMALT=7;MEANALT=13.5;LEN=1;MQM=60.0;MQMR=54.375;PAIRED=0.8;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.19516:18:2:56:1:14:-11.1965,-3.52801,-8.58196:1:7:15:.:.:1:.:.:.:-0.0124524	0/1:62.7515:60:6:222:4:134:-13.754,0.0,-28.3741:4:9:45:.:.:1:.:.:.:-0.068504
chr22	29682675	.	CAA	C	186.06	REJECT	SOMATIC;NS=2;DP=78;DPB=169.868;AC=1;AN=3;AF=0.0;RO=8;AO=12;PRO=51.4583;PAO=45.7083;QR=278;QA=324;PQR=1783.75;PQA=1576.5;SRF=7;SRR=1;SAF=10;SAR=2;SRP=12.7819;SAP=14.5915;AB=0.153846;ABP=84.19;RUN=1;RPP=14.5915;RPPR=7.35324;RPL=2.0;RPR=10.0;EPP=14.5915;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=del;CIGAR=1M2D35M;NUMALT=7;MEANALT=13.5;LEN=2;MQM=60.0;MQMR=54.375;PAIRED=0.916667;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.02;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=57.46;MQRankSum=1.501;QD=4.45;RPA=26,24;RU=A;ReadPosRankSum=1.181;SOR=0.434;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.19516:18:2:56:4:106:-11.1965,-3.53171,-8.84555:4:27:15:.:.:.:.:.:.:.:.:-0.0124524	./1:80.87575:85:6:222:8:218:-13.754,-0.636052,-46.5337:19:38:49:22,31:527,0,312:.:1:1:.:.:.:-0.068504
chr22	29682675	.	CAAA	C	186.06	REJECT	NS=2;DP=78;DPB=169.868;AC=2;AN=2;AF=0.25;RO=8;AO=8;PRO=51.4583;PAO=46.875;QR=278;QA=278;PQR=1783.75;PQA=1614.5;SRF=7;SRR=1;SAF=8;SAR=0;SRP=12.7819;SAP=20.3821;AB=0.102564;ABP=110.025;RUN=1;RPP=7.35324;RPPR=7.35324;RPL=6.0;RPR=2.0;EPP=7.35324;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=del;CIGAR=1M3D34M;NUMALT=7;MEANALT=13.5;LEN=3;MQM=59.75;MQMR=54.375;PAIRED=1.0;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:6.19516:18:2:56:4:126:-11.1965,-2.09211,-33.6013:4:27:15:.:.:1:.:.:.:-0.0124524	./1:62.7515:60:6:222:4:152:-13.754,-7.85049,-99.991:4:9:45:.:.:1:.:.:.:-0.068504
chr22	29682699	.	AAATTTTTTTG	TTTTTTTT	186.06	REJECT	SOMATIC;NS=2;DP=78;DPB=169.868;AC=1;AN=3;AF=0.0;RO=8;AO=4;PRO=51.4583;PAO=10.7917;QR=278;QA=56;PQR=1783.75;PQA=291.25;SRF=7;SRR=1;SAF=4;SAR=0;SRP=12.7819;SAP=11.6962;AB=0.0666667;ABP=100.871;RUN=1;RPP=3.0103;RPPR=7.35324;RPL=2.0;RPR=2.0;EPP=3.0103;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=complex;CIGAR=1M3D30M1X3M;NUMALT=7;MEANALT=19.0;LEN=35;MQM=60.0;MQMR=54.375;PAIRED=1.0;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.19516:18:2:56:0:0:-11.1965,-40.7607,-404.256:0:0:15:.:.:.:.:.:.:-0.0124524	./1:62.7515:60:6:222:4:56:-13.754,-113.272,-1586.78:4:9:45:.:.:1:.:.:.:-0.068504
chr22	29682700	.	AATTTTTTTG	TTTTTTTT	186.06	REJECT	SOMATIC;NS=2;DP=78;DPB=169.868;AC=1;AN=3;AF=0.0;RO=8;AO=8;PRO=51.4583;PAO=12.125;QR=278;QA=113;PQR=1783.75;PQA=326.25;SRF=7;SRR=1;SAF=8;SAR=0;SRP=12.7819;SAP=20.3821;AB=0.102564;ABP=110.025;RUN=1;RPP=3.0103;RPPR=7.35324;RPL=4.0;RPR=4.0;EPP=3.0103;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=complex;CIGAR=1M2D31M1X3M;NUMALT=7;MEANALT=13.5;LEN=36;MQM=61.0;MQMR=54.375;PAIRED=1.0;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.19516:18:2:56:3:55:-11.1965,-31.3885,-367.103:3:20:15:.:.:.:.:.:.:-0.0124524	./1:62.7515:60:6:222:5:58:-13.754,-108.49,-1536.28:5:11:45:.:.:1:.:.:.:-0.068504
chr22	29682701	.	ATTTTTTTG	TTTTTTTT	186.06	REJECT	SOMATIC;NS=2;DP=78;DPB=169.868;AC=1;AN=3;AF=0.0;RO=8;AO=12;PRO=51.4583;PAO=14.2083;QR=278;QA=162;PQR=1783.75;PQA=374.0;SRF=7;SRR=1;SAF=12;SAR=0;SRP=12.7819;SAP=29.068;AB=0.153846;ABP=84.19;RUN=1;RPP=3.73412;RPPR=7.35324;RPL=5.0;RPR=7.0;EPP=3.73412;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=complex;CIGAR=1M1D32M1X3M;NUMALT=7;MEANALT=13.5;LEN=37;MQM=56.0;MQMR=54.375;PAIRED=1.0;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.19516:18:2:56:1:2:-11.1965,-26.7969,-362.077:1:7:15:.:.:.:.:.:.:-0.0124524	./1:62.7515:60:6:222:11:160:-13.754,-93.2654,-1506.21:11:24:45:.:.:1:.:.:.:-0.068504
chr22	29682701	.	ATTTTTTTG	TTTTTTTTT	186.06	REJECT	SOMATIC;NS=2;DP=78;DPB=169.868;AC=1;AN=3;AF=0.0;RO=8;AO=3;PRO=51.4583;PAO=12.0417;QR=278;QA=44;PQR=1783.75;PQA=334.0;SRF=7;SRR=1;SAF=3;SAR=0;SRP=12.7819;SAP=9.52472;AB=0.05;ABP=108.544;RUN=1;RPP=3.73412;RPPR=7.35324;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=4.09604;DPRA=0.0;ODDS=1.52304;GTI=0;TYPE=complex;CIGAR=26M1X7M1X3M;NUMALT=7;MEANALT=19.0;LEN=38;MQM=53.3333;MQMR=54.375;PAIRED=1.0;PAIREDR=0.875;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:6.19516:18:2:56:0:0:-11.1965,-34.6281,-371.833:0:0:15:.:.:.:.:.:.:-0.0124524	./1:62.7515:60:6:222:3:44:-13.754,-118.186,-1535.2:3:7:45:.:.:1:.:.:.:-0.068504
chr22	29682881	.	C	CT	679.496	REJECT	NS=2;DP=329;DPB=512.484;AC=2;AN=2;AF=0.0;RO=208;AO=27;PRO=172.333;PAO=103.333;QR=7521;QA=986;PQR=6192.83;PQA=3713.83;SRF=97;SRR=111;SAF=13;SAR=14;SRP=5.0565;SAP=3.09072;AB=0.0820669;ABP=502.152;RUN=1;RPP=3.73412;RPPR=4.51363;RPL=15.0;RPR=12.0;EPP=5.02092;EPPR=4.05428;DPRA=0.0;ODDS=51.6615;GTI=0;TYPE=ins;CIGAR=1M1I30M;NUMALT=2;MEANALT=21.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990385;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.161:79:48:1721:5:191:-23.8613,-21.8609,-206.791:5:8:65:.:.:1:.:.:.:-0.0124524	./1:133.161:250:160:5800:22:795:-50.6321,-31.8143,-678.781:22:10:216:.:.:1:.:.:.:-0.068504
chr22	29682881	.	CT	C	679.496	REJECT	NS=2;DP=329;DPB=512.484;AC=2;AN=4;AF=0.5;RO=208;AO=46;PRO=172.333;PAO=99.3333;QR=7521;QA=1637;PQR=6192.83;PQA=3570.33;SRF=97;SRR=111;SAF=21;SAR=25;SRP=5.0565;SAP=3.76559;AB=0.139818;ABP=373.738;RUN=1;RPP=4.70971;RPPR=4.51363;RPL=20.0;RPR=26.0;EPP=15.095;EPPR=4.05428;DPRA=0.0;ODDS=51.6615;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=2;MEANALT=21.0;LEN=1;MQM=60.2174;MQMR=60.0;PAIRED=1.0;PAIREDR=0.990385;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.387;FS=8.496;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.189;QD=1.15;ReadPosRankSum=1.23;SOR=1.181;ClippingRankSum=-0.462	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.0805:86:48:1721:12:430:-23.8613,0.0,-189.685:15:19:79:75,19:166,0,1568:1:.:1:.:.:.:-0.0124524	0/1:133.161:250:160:5800:34:1207:-50.6321,0.0,-710.707:34:16:216:.:.:.:.:1:.:.:.:-0.068504
chr22	29685711	.	C	T	2564.37	REJECT	NS=2;DP=475;DPB=544.0;AC=2;AN=4;AF=0.5;RO=415;AO=128;PRO=0.0;PAO=0.0;QR=15853;QA=4843;PQR=0.0;PQA=0.0;SRF=236;SRR=179;SAF=76;SAR=52;SRP=20.0106;SAP=12.7819;AB=0.235294;ABP=334.096;RUN=1;RPP=3.07816;RPPR=3.26669;RPL=63.0;RPR=65.0;EPP=3.62103;EPPR=3.43413;DPRA=0.0;ODDS=214.126;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992188;PAIREDR=0.99759;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.801;Dels=0.0;FS=2.5565;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.22;QD=10.09;ReadPosRankSum=0.7335;SOR=0.8375;ClippingRankSum=0.429	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:136:70:2631:67:2569:-194.082,0.0,-199.635:66:48:136:70,65:2338,0,2410:1:.:1:.:.:.:-0.0124524	0/1:129.501:406:345:13222:61:2274:-94.6163,0.0,-1079.21:61:15:406:345,61:1326,0,13550:.:1:1:.:.:.:-0.068504
chr22	29688751	.	C	CT	385.769	REJECT	NS=2;DP=108;DPB=204.731;AC=2;AN=2;AF=0.0;RO=15;AO=8;PRO=41.9;PAO=38.9;QR=528;QA=215;PQR=1484.93;PQA=1336.93;SRF=4;SRR=11;SAF=2;SAR=6;SRP=10.1038;SAP=7.35324;AB=0.0740741;ABP=173.189;RUN=1;RPP=7.35324;RPPR=14.7363;RPL=6.0;RPR=2.0;EPP=3.0103;EPPR=3.15506;DPRA=0.0;ODDS=2.58624;GTI=0;TYPE=ins;CIGAR=2M1I24M;NUMALT=5;MEANALT=15.5;LEN=1;MQM=60.0;MQMR=54.4;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.85346:20:4:142:1:27:-2.67906,-1.87211,-15.7636:1:6:16:.:.:1:.:.:.:-0.0124524	./1:160.002:88:11:386:7:188:-49.7555,-35.6467,-76.7466:7:10:67:.:.:1:.:.:.:-0.068504
chr22	29688751	.	CT	C	385.769	REJECT	NS=2;DP=108;DPB=204.731;AC=2;AN=4;AF=0.5;RO=15;AO=31;PRO=41.9;PAO=35.9;QR=528;QA=734;PQR=1484.93;PQA=1243.6;SRF=4;SRR=11;SAF=2;SAR=29;SRP=10.1038;SAP=54.0749;AB=0.287037;ABP=45.5551;RUN=1;RPP=23.254;RPPR=14.7363;RPL=24.0;RPR=7.0;EPP=14.8483;EPPR=3.15506;DPRA=0.0;ODDS=2.58624;GTI=0;TYPE=del;CIGAR=2M1D23M;NUMALT=5;MEANALT=15.5;LEN=1;MQM=58.9355;MQMR=54.4;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:9.85346:20:4:142:6:114:-2.67906,0.0,-61.9672:6:38:16:.:.:1:.:.:.:-0.0124524	0/1:160.002:88:11:386:25:620:-49.7555,0.0,-131.642:25:37:67:.:.:1:.:.:.:-0.068504
chr22	29688751	.	CTT	C	385.769	REJECT	NS=2;DP=108;DPB=204.731;AC=2;AN=2;AF=0.0;RO=15;AO=13;PRO=41.9;PAO=27.8167;QR=528;QA=343;PQR=1484.93;PQA=967.933;SRF=4;SRR=11;SAF=3;SAR=10;SRP=10.1038;SAP=11.1951;AB=0.12037;ABP=138.205;RUN=1;RPP=23.2217;RPPR=14.7363;RPL=12.0;RPR=1.0;EPP=16.5402;EPPR=3.15506;DPRA=0.0;ODDS=2.58624;GTI=0;TYPE=del;CIGAR=2M2D22M;NUMALT=5;MEANALT=15.5;LEN=2;MQM=60.0;MQMR=54.4;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.921;FS=1.263;MLEAC=1;MLEAF=0.5;MQ=58.74;MQRankSum=1.078;QD=1.98;RPA=19,17;RU=T;ReadPosRankSum=2.062;SOR=0.492;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.85346:20:4:142:3:109:-2.67906,-3.70671,-106.634:3:19:16:.:.:.:.:1:.:.:.:-0.0124524	./1:129.501:148:11:386:10:234:-49.7555,-53.7208,-355.007:20:23:82:68,30:454,0,1268:.:1:1:.:.:.:-0.068504
chr22	29688751	.	CTTT	C	385.769	REJECT	NS=2;DP=108;DPB=204.731;AC=2;AN=2;AF=0.0;RO=15;AO=10;PRO=41.9;PAO=23.3667;QR=528;QA=246;PQR=1484.93;PQA=807.533;SRF=4;SRR=11;SAF=2;SAR=8;SRP=10.1038;SAP=10.8276;AB=0.0925926;ABP=158.713;RUN=1;RPP=10.8276;RPPR=14.7363;RPL=8.0;RPR=2.0;EPP=3.87889;EPPR=3.15506;DPRA=0.0;ODDS=2.58624;GTI=0;TYPE=del;CIGAR=2M3D21M;NUMALT=5;MEANALT=15.5;LEN=3;MQM=59.0;MQMR=54.4;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.85346:20:4:142:2:68:-2.67906,-12.2831,-175.003:2:13:16:.:.:1:.:.:.:-0.0124524	./1:160.002:88:11:386:8:178:-49.7555,-74.8125,-497.82:8:12:67:.:.:1:.:.:.:-0.068504
chr22	29688770	.	TG	T	385.769	REJECT	NS=2;DP=108;DPB=204.731;AC=2;AN=2;AF=0.0;RO=15;AO=6;PRO=41.9;PAO=29.1167;QR=528;QA=48;PQR=1484.93;PQA=1024.07;SRF=4;SRR=11;SAF=6;SAR=0;SRP=10.1038;SAP=16.0391;AB=0.0681818;ABP=145.538;RUN=1;RPP=16.0391;RPPR=14.7363;RPL=6.0;RPR=0.0;EPP=16.0391;EPPR=3.15506;DPRA=0.0;ODDS=2.58624;GTI=0;TYPE=del;CIGAR=21M1D4M;NUMALT=5;MEANALT=23.0;LEN=1;MQM=55.1667;MQMR=54.4;PAIRED=0.833333;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:9.85346:20:4:142:0:0:-2.67906,-11.9021,-111.013:0:0:16:.:.:1:.:.:.:-0.0124524	./1:160.002:88:11:386:6:48:-49.7555,-83.9003,-469.594:6:9:67:.:.:1:.:.:.:-0.068504
chr22	29689837	.	A	G	730.115	REJECT	NS=2;DP=31;DPB=36.0;AC=2;AN=4;AF=0.5;RO=9;AO=27;PRO=0.0;PAO=0.0;QR=321;QA=981;PQR=0.0;PQA=0.0;SRF=2;SRR=7;SAF=15;SAR=12;SRP=9.04217;SAP=3.73412;AB=0.75;ABP=22.5536;RUN=1;RPP=3.73412;RPPR=9.04217;RPL=12.0;RPR=15.0;EPP=12.7417;EPPR=9.04217;DPRA=0.0;ODDS=4.70096;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1895;Dels=0.0;FS=4.67;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.3885;QD=21.095;ReadPosRankSum=-0.937;SOR=0.656;ClippingRankSum=0.573	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:86.53775:9:6:204:3:119:-8.37331,0.0,-16.1037:3:33:9:6,3:107,0,195:1:.:1:.:.:.:-0.0124524	0/1:35.22765:27:3:117:24:862:-70.492,0.0,-3.24033:24:89:27:3,24:931,0,50:.:1:1:.:.:.:-0.068504
chr22	29689868	.	G	A	1347.47	REJECT	NS=2;DP=38;DPB=43.0;AC=4;AN=4;AF=1.0;RO=0;AO=43;PRO=0.0;PAO=0.0;QR=0;QA=1565;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=29;SAR=14;SRP=0.0;SAP=14.3727;AB=0.0;ABP=0.0;RUN=1;RPP=3.46479;RPPR=0.0;RPL=20.0;RPR=23.0;EPP=29.7245;EPPR=0.0;DPRA=0.0;ODDS=9.97225;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.31;SOR=1.7555	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:35.1546:9:0:0:9:284:-25.8504,-2.45583,0.0:9:100:9:0,9:315,27,0:1:.:1:.:.:.:-0.0124524	1/1:105.068:34:0:0:34:1281:-115.57,-9.23851,0.0:34:100:34:0,34:1447,102,0:.:1:1:.:.:.:-0.068504
chr22	29690345	.	T	C	1118.95	REJECT	NS=2;DP=220;DPB=247.0;AC=2;AN=4;AF=0.5;RO=189;AO=58;PRO=0.0;PAO=0.0;QR=7252;QA=2219;PQR=0.0;PQA=0.0;SRF=27;SRR=162;SAF=7;SAR=51;SRP=212.402;SAP=75.4926;AB=0.234818;ABP=153.879;RUN=1;RPP=5.40641;RPPR=12.6728;RPL=33.0;RPR=25.0;EPP=4.35811;EPPR=10.1911;DPRA=0.0;ODDS=90.8373;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=51.9655;MQMR=57.3651;PAIRED=0.982759;PAIREDR=0.994709;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.5825;Dels=0.0;FS=4.5845;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.5;MQ=55.955;MQRankSum=-1.1355;QD=11.87;ReadPosRankSum=0.162;SOR=1.252;ClippingRankSum=-0.476	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:53:23:901:30:1143:-86.0,0.0,-66.3359:30:57:53:23,30:1123,0,851:1:.:1:.:.:.:-0.0124524	0/1:129.501:193:166:6351:28:1076:-41.9277,0.0,-515.145:28:14:193:165,28:623,0,6450:.:1:1:.:.:.:-0.068504
chr22	29690593	.	C	CA	7.51042	REJECT	SOMATIC;NS=2;DP=18;DPB=20.75;AC=1;AN=4;AF=0.25;RO=9;AO=4;PRO=4.5;PAO=4.5;QR=327;QA=82;PQR=152.0;PQA=152.0;SRF=2;SRR=7;SAF=2;SAR=2;SRP=9.04217;SAP=3.0103;AB=0.266667;ABP=10.1038;RUN=1;RPP=5.18177;RPPR=3.25157;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=9.04217;DPRA=5.0;ODDS=1.35526;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=50.5;MQMR=59.6667;PAIRED=0.75;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:8.70707:3:1:34:0:0:0.0,-0.285814,-3.22879:0:0:1:.:.:0:.:.:.:-0.0124524	0/1:7.51042:15:8:293:4:82:-4.09373,0.0,-23.2779:4:33:12:.:.:1:.:.:.:-0.068504
chr22	29690900	.	C	CA	240.696	REJECT	NS=2;DP=136;DPB=179.55;AC=2;AN=3;AF=0.25;RO=87;AO=15;PRO=28.25;PAO=24.25;QR=3195;QA=500;PQR=963.667;PQA=816.667;SRF=56;SRR=31;SAF=11;SAR=4;SRP=18.61;SAP=10.1038;AB=0.110294;ABP=182.412;RUN=1;RPP=6.62942;RPPR=24.0012;RPL=5.0;RPR=10.0;EPP=3.15506;EPPR=10.2236;DPRA=0.0;ODDS=8.22174;GTI=0;TYPE=ins;CIGAR=1M1I19M;NUMALT=3;MEANALT=8.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977011;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.0671:32:17:628:3:108:-16.1011,-9.63785,-72.6981:3:10:29:.:.:1:.:.:.:-0.0124524	0/1:35.7077:104:70:2567:12:392:-15.1258,0.0,-214.41:12:13:96:.:.:1:.:.:.:-0.068504
chr22	29690900	.	CA	C	240.696	REJECT	NS=2;DP=136;DPB=179.55;AC=2;AN=3;AF=0.25;RO=87;AO=18;PRO=28.25;PAO=22.25;QR=3195;QA=650;PQR=963.667;PQA=745.667;SRF=56;SRR=31;SAF=16;SAR=2;SRP=18.61;SAP=26.6552;AB=0.132353;ABP=162.677;RUN=1;RPP=10.7311;RPPR=24.0012;RPL=5.0;RPR=13.0;EPP=4.9405;EPPR=10.2236;DPRA=0.0;ODDS=8.22174;GTI=0;TYPE=del;CIGAR=1M1D18M;NUMALT=3;MEANALT=8.0;LEN=1;MQM=60.5556;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977011;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.636;FS=1.983;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.246;QD=2.26;ReadPosRankSum=-0.839;SOR=1.501;ClippingRankSum=0.585	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:89.03355:34:17:628:7:263:-16.1011,0.0,-62.246:8:26:32:26,10:123,0,519:1:.:1:.:.:.:-0.0124524	./1:35.7077:104:70:2567:11:387:-15.1258,-2.79173,-217.727:11:11:96:.:.:.:.:1:.:.:.:-0.068504
chr22	29690900	.	CAA	C	240.696	REJECT	NS=2;DP=136;DPB=179.55;AC=2;AN=2;AF=0.0;RO=87;AO=5;PRO=28.25;PAO=21.25;QR=3195;QA=180;PQR=963.667;PQA=707.0;SRF=56;SRR=31;SAF=3;SAR=2;SRP=18.61;SAP=3.44459;AB=0.0367647;ABP=256.498;RUN=1;RPP=6.91895;RPPR=24.0012;RPL=1.0;RPR=4.0;EPP=3.44459;EPPR=10.2236;DPRA=0.0;ODDS=8.22174;GTI=0;TYPE=del;CIGAR=1M2D17M;NUMALT=3;MEANALT=8.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.977011;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:79.0671:32:17:628:2:75:-16.1011,-15.5842,-79.1872:2:7:29:.:.:1:.:.:.:-0.0124524	./1:35.7077:104:70:2567:3:105:-15.1258,-28.4398,-274.408:3:3:96:.:.:1:.:.:.:-0.068504
chr22	29691382	.	A	T	2100.075	REJECT	NS=2;DP=327;DPB=377.0;AC=2;AN=4;AF=0.5;RO=279;AO=97;PRO=0.0;PAO=0.0;QR=10590;QA=3692;PQR=0.0;PQA=0.0;SRF=150;SRR=129;SAF=47;SAR=50;SRP=6.44263;SAP=3.21178;AB=0.257294;ABP=195.903;RUN=1;RPP=3.56996;RPPR=3.01808;RPL=51.0;RPR=46.0;EPP=9.47994;EPPR=12.5445;DPRA=0.0;ODDS=150.29;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989691;PAIREDR=0.989247;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.2045;Dels=0.0;FS=8.1755;HaplotypeScore=2.9564;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.6725;QD=11.955;ReadPosRankSum=-1.035;SOR=1.1655;ClippingRankSum=0.795	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:96:42:1599:56:2130:-165.181,0.0,-117.379:55:57:96:40,55:1987,0,1420:1:.:1:.:.:.:-0.0124524	0/1:129.501:278:237:8991:41:1562:-65.2549,0.0,-733.453:41:15:277:236,41:942,0,9150:.:1:1:.:.:.:-0.068504
chr22	29691521	.	AG	A	17769.550000000003	REJECT	NS=2;DP=495;DPB=490.0;AC=4;AN=4;AF=1.0;RO=0;AO=557;PRO=22.5;PAO=25.5;QR=0;QA=20715;PQR=667.5;PQA=774.5;SRF=0;SRR=0;SAF=314;SAR=243;SRP=0.0;SAP=22.6627;AB=0.0;ABP=0.0;RUN=1;RPP=3.32608;RPPR=0.0;RPL=283.0;RPR=274.0;EPP=14.8033;EPPR=0.0;DPRA=0.0;ODDS=94.0223;GTI=0;TYPE=del;CIGAR=1M1D4M;NUMALT=1;MEANALT=3.5;LEN=1;MQM=60.1436;MQMR=0.0;PAIRED=0.991023;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=29691522;HOMLEN=2;HOMSEQ=GG;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.155;QD=33.405;RPA=3,2;RU=G;SOR=0.991;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:148:0:0:144:5287:-475.708,-38.9583,0.0:150:100:150:72,206:5338,452,0:1:.:1:1:.:.:-0.0124524	1/1:129.501:421:0:0:413:15428:-1397.22,-112.575,0.0:417:100:417:201,573:16923,1255,0:.:1:1:1:.:.:-0.068504
chr22	29692488	.	G	T	13346.0	REJECT	NS=2;DP=486;DPB=540.0;AC=2;AN=4;AF=0.5;RO=103;AO=437;PRO=0.0;PAO=0.0;QR=3962;QA=16559;PQR=0.0;PQA=0.0;SRF=52;SRR=51;SAF=227;SAR=210;SRP=3.03138;SAP=4.44635;AB=0.809259;ABP=451.604;RUN=1;RPP=14.941;RPPR=3.03138;RPL=243.0;RPR=194.0;EPP=9.81292;EPPR=4.04333;DPRA=0.0;ODDS=51.6049;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995423;PAIREDR=0.990291;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.069;Dels=0.0;FS=0.3715;HaplotypeScore=3.882;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.2525;QD=22.81;ReadPosRankSum=0.2375;SOR=0.7635;ClippingRankSum=0.043	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:105:63:2409:44:1639:-118.536,0.0,-187.85:44:42:105:59,44:1725,0,4410:1:.:1:.:.:.:-0.0124524	0/1:129.501:432:40:1553:393:14920:-1224.64,0.0,-22.816:392:91:432:40,392:15411,0,459:.:1:1:.:.:.:-0.068504
chr22	29692497	.	G	T	13717.9	REJECT	NS=2;DP=494;DPB=551.0;AC=2;AN=4;AF=0.5;RO=107;AO=444;PRO=0.0;PAO=0.0;QR=4135;QA=17000;PQR=0.0;PQA=0.0;SRF=52;SRR=55;SAF=231;SAR=213;SRP=3.19295;SAP=4.59489;AB=0.805808;ABP=450.582;RUN=1;RPP=12.4787;RPPR=3.19295;RPL=244.0;RPR=200.0;EPP=6.31642;EPPR=4.00471;DPRA=0.0;ODDS=64.4009;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.995495;PAIREDR=0.990654;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4895;Dels=0.0;FS=3.4335;HaplotypeScore=4.9317;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.381;QD=22.71;ReadPosRankSum=0.0645;SOR=0.8225;ClippingRankSum=0.69	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:111:65:2499:48:1743:-126.262,0.0,-194.319:48:43:111:62,48:1765,0,4481:1:.:1:.:.:.:-0.0124524	0/1:129.501:437:42:1636:396:15257:-1253.53,0.0,-28.4995:395:90:437:42,395:15733,0,530:.:1:1:.:.:.:-0.068504
chr22	29694312	.	G	A	601.636	REJECT	NS=2;DP=147;DPB=168.0;AC=2;AN=4;AF=0.5;RO=133;AO=35;PRO=0.0;PAO=0.0;QR=5101;QA=1305;PQR=0.0;PQA=0.0;SRF=27;SRR=106;SAF=5;SAR=30;SRP=104.906;SAP=41.7866;AB=0.208333;ABP=127.146;RUN=1;RPP=8.03571;RPPR=7.72876;RPL=22.0;RPR=13.0;EPP=6.05036;EPPR=23.0107;DPRA=0.0;ODDS=22.6098;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=51.6857;MQMR=59.4812;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4375;Dels=0.0;FS=0.6695;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.5;MQ=57.36;MQRankSum=-1.57;QD=9.385;ReadPosRankSum=-0.012;SOR=0.7985;ClippingRankSum=-0.3	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.0635:41:21:804:21:775:-57.2836,0.0,-61.0886:21:50:41:20,21:741,0,740:1:.:1:.:.:.:-0.0124524	0/1:98.5963:126:112:4297:14:530:-12.7431,0.0,-352.18:14:11:126:112,14:203,0,4437:.:1:1:.:.:.:-0.068504
chr22	29694483	.	T	C	620.041	REJECT	NS=2;DP=174;DPB=202.0;AC=2;AN=4;AF=0.5;RO=161;AO=41;PRO=0.0;PAO=0.0;QR=5818;QA=1414;PQR=0.0;PQA=0.0;SRF=140;SRR=21;SAF=36;SAR=5;SRP=194.005;SAP=53.9075;AB=0.20297;ABP=157.808;RUN=1;RPP=3.48696;RPPR=3.34749;RPL=22.0;RPR=19.0;EPP=7.30028;EPPR=6.04497;DPRA=0.0;ODDS=0.485759;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=58.4878;MQMR=59.1925;PAIRED=0.97561;PAIREDR=0.993789;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1705;Dels=0.0;FS=0.8575;HaplotypeScore=10.7007;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-1.067;QD=8.06;ReadPosRankSum=-0.4895;SOR=0.959;ClippingRankSum=-0.341	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.911:51:28:1031:26:939:-69.9121,0.0,-77.7852:24:47:51:26,22:767,0,934:1:.:1:.:.:.:-0.0124524	0/1:51.595985:147:133:4787:15:475:-2.93501,0.0,-390.539:15:10:147:132,15:135,0,4801:.:1:1:.:.:.:-0.068504
chr22	29694497	.	C	CA	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=15;PRO=33.15;PAO=30.15;QR=2102;QA=499;PQR=1138.28;PQA=975.775;SRF=48;SRR=10;SAF=13;SAR=2;SRP=57.0725;SAP=20.5268;AB=0.0925926;ABP=236.564;RUN=1;RPP=10.1038;RPPR=51.5315;RPL=4.0;RPR=11.0;EPP=20.5268;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=ins;CIGAR=1M1I24M;NUMALT=7;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.6552;PAIRED=0.933333;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:3:93:-2.84579,-0.166255,-52.5445:3:9:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:12:406:-21.117,-3.19512,-178.629:12:12:99:.:.:1:.:.:.:-0.068504
chr22	29694497	.	CA	C	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=4;AF=0.5;RO=58;AO=18;PRO=33.15;PAO=23.15;QR=2102;QA=628;PQR=1138.28;PQA=765.108;SRF=48;SRR=10;SAF=14;SAR=4;SRP=57.0725;SAP=15.074;AB=0.111111;ABP=215.815;RUN=1;RPP=20.3821;RPPR=51.5315;RPL=3.0;RPR=15.0;EPP=20.3821;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=del;CIGAR=1M1D23M;NUMALT=7;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:160.002:41:12:423:2:74:-2.84579,0.0,-106.286:2:6:33:.:.:1:.:.:.:-0.0124524	0/1:29.3572:121:46:1679:16:554:-21.117,0.0,-309.339:16:16:99:.:.:1:.:.:.:-0.068504
chr22	29694497	.	CAA	C	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=4;PRO=33.15;PAO=17.9833;QR=2102;QA=151;PQR=1138.28;PQA=598.875;SRF=48;SRR=10;SAF=4;SAR=0;SRP=57.0725;SAP=11.6962;AB=0.0246914;ABP=320.903;RUN=1;RPP=5.18177;RPPR=51.5315;RPL=1.0;RPR=3.0;EPP=5.18177;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=del;CIGAR=1M2D22M;NUMALT=7;MEANALT=18.0;LEN=2;MQM=60.0;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:2:79:-2.84579,-12.2754,-184.364:2:6:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:2:72:-21.117,-51.1621,-450.896:2:2:99:.:.:1:.:.:.:-0.068504
chr22	29694497	.	CAAA	C	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=3;PRO=33.15;PAO=16.7333;QR=2102;QA=84;PQR=1138.28;PQA=553.708;SRF=48;SRR=10;SAF=3;SAR=0;SRP=57.0725;SAP=9.52472;AB=0.0185185;ABP=329.214;RUN=1;RPP=3.73412;RPPR=51.5315;RPL=2.0;RPR=1.0;EPP=3.73412;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=del;CIGAR=1M3D21M;NUMALT=7;MEANALT=18.0;LEN=3;MQM=60.0;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:2:53:-2.84579,-16.2413,-206.709:2:6:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:1:31:-21.117,-61.0815,-531.43:1:1:99:.:.:1:.:.:.:-0.068504
chr22	29694497	.	CAAAA	C	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=2;PRO=33.15;PAO=16.3333;QR=2102;QA=70;PQR=1138.28;PQA=539.708;SRF=48;SRR=10;SAF=1;SAR=1;SRP=57.0725;SAP=3.0103;AB=0.0487805;ABP=75.5163;RUN=1;RPP=7.35324;RPPR=51.5315;RPL=2.0;RPR=0.0;EPP=3.0103;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=del;CIGAR=1M4D20M;NUMALT=7;MEANALT=15.0;LEN=4;MQM=60.0;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:2:70:-2.84579,-16.0659,-222.28:2:6:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:0:0:-21.117,-64.9554,-548.623:0:0:99:.:.:1:.:.:.:-0.068504
chr22	29694515	.	ATTGT	TTGG	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=7;PRO=33.15;PAO=8.5;QR=2102;QA=96;PQR=1138.28;PQA=259.442;SRF=48;SRR=10;SAF=7;SAR=0;SRP=57.0725;SAP=18.2106;AB=0.0432099;ABP=296.615;RUN=1;RPP=5.80219;RPPR=51.5315;RPL=5.0;RPR=2.0;EPP=5.80219;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=complex;CIGAR=1M1D20M1X2M;NUMALT=7;MEANALT=18.0;LEN=24;MQM=59.5714;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:3:34:-2.84579,-35.3271,-479.279:3:9:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:4:62:-21.117,-127.986,-1360.13:4:4:99:.:.:1:.:.:.:-0.068504
chr22	29694519	.	T	G	148.673	REJECT	NS=2;DP=162;DPB=244.08;AC=2;AN=2;AF=0.0;RO=58;AO=25;PRO=33.15;PAO=22.0;QR=2102;QA=270;PQR=1138.28;PQA=717.108;SRF=48;SRR=10;SAF=25;SAR=0;SRP=57.0725;SAP=57.2971;AB=0.154321;ABP=171.152;RUN=1;RPP=10.0459;RPPR=51.5315;RPL=17.0;RPR=8.0;EPP=10.0459;EPPR=24.5753;DPRA=0.0;ODDS=2.9851;GTI=1;TYPE=snp;CIGAR=22M1X2M;NUMALT=7;MEANALT=18.0;LEN=1;MQM=60.0;MQMR=59.6552;PAIRED=1.0;PAIREDR=0.982759;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:41:12:423:7:80:-2.84579,-29.7213,-400.726:7:21:33:.:.:1:.:.:.:-0.0124524	./1:29.3572:121:46:1679:18:190:-21.117,-103.103,-1164.89:18:18:99:.:.:1:.:.:.:-0.068504
chr22	29899735	.	G	GA	2073.62	REJECT	NS=2;DP=322;DPB=397.136;AC=2;AN=2;AF=0.0;RO=135;AO=17;PRO=51.75;PAO=42.75;QR=4701;QA=580;PQR=1751.58;PQA=1476.58;SRF=97;SRR=38;SAF=14;SAR=3;SRP=59.0021;SAP=18.4661;AB=0.052795;ABP=562.36;RUN=1;RPP=9.26925;RPPR=38.542;RPL=5.0;RPR=12.0;EPP=3.13803;EPPR=3.79846;DPRA=0.0;ODDS=137.817;GTI=0;TYPE=ins;CIGAR=1M1I21M;NUMALT=3;MEANALT=22.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985185;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:76:23:776:3:92:-92.3063,-91.6113,-159.316:3:5:64:.:.:1:.:.:.:-0.0124524	./1:160.002:246:112:3925:14:488:-129.105,-121.22,-457.743:14:7:199:.:.:1:.:.:.:-0.068504
chr22	29899735	.	GA	G	1657.675	REJECT	NS=2;DP=300;DPB=397.136;AC=2;AN=4;AF=0.5;RO=135;AO=92;PRO=51.75;PAO=37.75;QR=4701;QA=3189;PQR=1751.58;PQA=1276.58;SRF=97;SRR=38;SAF=69;SAR=23;SRP=59.0021;SAP=52.9542;AB=0.285714;ABP=131.437;RUN=1;RPP=33.5997;RPPR=38.542;RPL=28.0;RPR=64.0;EPP=5.3706;EPPR=3.79846;DPRA=0.0;ODDS=137.817;GTI=0;TYPE=del;CIGAR=1M1D20M;NUMALT=3;MEANALT=22.5;LEN=1;MQM=60.5435;MQMR=60.0;PAIRED=0.98913;PAIREDR=0.985185;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.8695;FS=2.1335;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.805;QD=7.8;RPA=12,11;RU=A;ReadPosRankSum=-0.638;SOR=0.7535;STR;ClippingRankSum=-0.057	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:74:23:776:33:1188:-92.3063,0.0,-88.9672:38:56:68:28,44:907,0,539:1:.:1:.:.:.:-0.0124524	0/1:129.501:262:112:3925:59:2001:-129.105,0.0,-388.531:71:31:230:179,83:1279,0,3610:.:1:1:.:.:.:-0.068504
chr22	29899735	.	GAA	G	2073.62	REJECT	NS=2;DP=322;DPB=397.136;AC=2;AN=2;AF=0.0;RO=135;AO=19;PRO=51.75;PAO=31.75;QR=4701;QA=663;PQR=1751.58;PQA=1082.25;SRF=97;SRR=38;SAF=13;SAR=6;SRP=59.0021;SAP=8.61041;AB=0.0590062;ABP=546.93;RUN=1;RPP=5.8675;RPPR=38.542;RPL=12.0;RPR=7.0;EPP=12.2676;EPPR=3.79846;DPRA=0.0;ODDS=137.817;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=3;MEANALT=22.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.985185;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:160.002:76:23:776:5:186:-92.3063,-90.4681,-230.747:5:8:64:.:.:1:.:.:.:-0.0124524	./1:160.002:246:112:3925:14:477:-129.105,-131.421,-568.785:14:7:199:.:.:1:.:.:.:-0.068504
chr22	29902192	.	A	C	1998.39	REJECT	NS=2;DP=403;DPB=464.0;AC=2;AN=4;AF=0.5;RO=364;AO=100;PRO=0.0;PAO=0.0;QR=13897;QA=3868;PQR=0.0;PQA=0.0;SRF=218;SRR=146;SAF=52;SAR=48;SRP=33.9359;SAP=3.35774;AB=0.215517;ABP=329.18;RUN=1;RPP=13.5202;RPPR=23.0785;RPL=39.0;RPR=61.0;EPP=13.5202;EPPR=8.37933;DPRA=0.0;ODDS=139.772;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994505;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.163;Dels=0.0;FS=4.1115;HaplotypeScore=7.7728;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.2295;QD=9.035;ReadPosRankSum=0.0125;SOR=0.43;ClippingRankSum=2.135	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:120:66:2496:55:2145:-160.264,0.0,-191.837:55:45:120:64,55:1879,0,2318:1:.:1:.:.:.:-0.0124524	0/1:129.501:343:298:11401:45:1723:-62.0682,0.0,-932.565:45:13:343:298,45:894,0,11759:.:1:1:.:.:.:-0.068504
chr22	30038152	.	A	C	1080.275	REJECT	NS=2;DP=220;DPB=245.0;AC=2;AN=4;AF=0.5;RO=187;AO=58;PRO=0.0;PAO=0.0;QR=7068;QA=2176;PQR=0.0;PQA=0.0;SRF=120;SRR=67;SAF=28;SAR=30;SRP=35.6288;SAP=3.16006;AB=0.236735;ABP=150.502;RUN=1;RPP=62.913;RPPR=75.4817;RPL=9.0;RPR=49.0;EPP=3.60933;EPPR=3.3006;DPRA=0.0;ODDS=101.786;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.994652;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.791;Dels=0.0;FS=7.958;HaplotypeScore=4.8659;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.242;QD=11.735;ReadPosRankSum=0.854;SOR=0.5065;ClippingRankSum=-0.091	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:49:21:812:28:1036:-80.072,0.0,-59.8875:28:57:49:21,28:1011,0,723:1:.:1:.:.:.:-0.0124524	0/1:129.501:195:166:6256:30:1140:-49.4765,0.0,-509.763:30:15:195:165,30:693,0,6369:.:1:1:.:.:.:-0.068504
chr22	33229804	.	G	A	2600.26	PASS	SOMATIC;NS=2;DP=394;DPB=394.0;AC=1;AN=3;AF=0.25;RO=291;AO=103;PRO=0.0;PAO=0.0;QR=11275;QA=3892;PQR=0.0;PQA=0.0;SRF=145;SRR=146;SAF=51;SAR=52;SRP=3.01776;SAP=3.03138;AB=0.336634;ABP=73.2499;RUN=1;RPP=4.71796;RPPR=3.37594;RPL=47.0;RPR=56.0;EPP=5.56125;EPPR=42.7759;DPRA=0.0;ODDS=52.3686;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.996564;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=0.729;Dels=0.0;FS=0.0;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.679;QD=10.98;ReadPosRankSum=-0.608;SOR=0.635	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:139.252:88:90:3456:1:27:0.0,-22.2328,-308.686:1:1:88:85,1:.:0.012:0:.:.:.:0:.:.:0:-0.0124524	0/1:119.126:302:201:7819:102:3865:-265.557,0.0,-621.244:102:34:302:191,99:38.0:0.344:2:3343,0,7807:.:1:1:.:.:1:-0.068504
chr22	33229830	.	A	G	8094.93	REJECT	NS=2;DP=332;DPB=380.0;AC=3;AN=4;AF=0.75;RO=94;AO=286;PRO=0.0;PAO=0.0;QR=3601;QA=10926;PQR=0.0;PQA=0.0;SRF=38;SRR=56;SAF=114;SAR=172;SRP=10.4949;SAP=28.5517;AB=0.672535;ABP=76.4428;RUN=1;RPP=8.14287;RPPR=3.37991;RPL=156.0;RPR=130.0;EPP=40.2138;EPPR=4.48875;DPRA=0.0;ODDS=57.4013;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.7915;Dels=0.0;FS=2.091;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.75;MQ=60.0;MQRankSum=0.1415;QD=27.395;ReadPosRankSum=-0.8275;SOR=0.7515;ClippingRankSum=0.221	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:95:1:16:95:3616:-324.075,-24.5788,0.0:94:99:95:1,93:3670,272,0:1:.:1:.:.:.:-0.0124524	0/1:129.501:284:93:3585:191:7310:-580.584,0.0,-245.571:191:67:284:93,191:7299,0,3186:.:1:1:.:.:.:-0.068504
chr22	36688178	.	G	A	1877.79	REJECT	NS=2;DP=358;DPB=416.0;AC=2;AN=4;AF=0.5;RO=322;AO=92;PRO=0.0;PAO=0.0;QR=12364;QA=3531;PQR=0.0;PQA=0.0;SRF=153;SRR=169;SAF=42;SAR=50;SRP=4.73669;SAP=4.52089;AB=0.221154;ABP=283.965;RUN=1;RPP=3.0103;RPPR=14.9062;RPL=46.0;RPR=46.0;EPP=6.40913;EPPR=27.2876;DPRA=0.0;ODDS=103.381;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4095;Dels=0.0;FS=1.559;HaplotypeScore=3.9327;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.113;QD=9.08;ReadPosRankSum=0.912;SOR=0.826;ClippingRankSum=-0.573	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.222:112:59:2249:55:2121:-160.009,0.0,-171.525:54:48:111:56,53:1788,0,1870:1:.:1:.:.:.:-0.0124524	0/1:118.222:301:263:10115:37:1410:-45.6024,0.0,-828.542:37:12:300:263,37:678,0,10407:.:1:1:.:.:.:-0.068504
chr22	36690113	.	G	A	7084.32	REJECT	NS=2;DP=189;DPB=212.0;AC=4;AN=4;AF=1.0;RO=0;AO=212;PRO=0.0;PAO=0.0;QR=0;QA=8157;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=154;SAR=58;SRP=0.0;SAP=97.4079;AB=0.0;ABP=0.0;RUN=1;RPP=105.438;RPPR=0.0;RPL=56.0;RPR=156.0;EPP=19.3988;EPPR=0.0;DPRA=0.0;ODDS=33.0727;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.695;SOR=1.9525	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:119.529:45:0:0:46:1749:-157.648,-12.4882,0.0:45:100:45:0,45:1895,135,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:166:0:0:166:6408:-576.559,-44.9816,0.0:166:100:166:0,166:7180,497,0:.:1:1:.:.:.:-0.068504
chr22	36691607	.	A	C	12616.05	REJECT	NS=2;DP=342;DPB=393.0;AC=4;AN=4;AF=1.0;RO=4;AO=387;PRO=0.0;PAO=0.0;QR=109;QA=14732;PQR=0.0;PQA=0.0;SRF=2;SRR=2;SAF=238;SAR=149;SRP=3.0103;SAP=47.4553;AB=0.0;ABP=0.0;RUN=1;RPP=3.15058;RPPR=5.18177;RPL=196.0;RPR=191.0;EPP=3.95857;EPPR=5.18177;DPRA=0.0;ODDS=60.1973;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.994832;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.469;Dels=0.0;FS=0.0;HaplotypeScore=5.9312;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=-0.256;QD=27.7;ReadPosRankSum=0.642;SOR=0.8;ClippingRankSum=1.469	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:96:1:37:99:3747:-333.533,-23.3652,0.0:95:99:96:1,91:3712,237,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:292:3:72:288:10985:-981.527,-72.2693,0.0:288:99:291:3,288:12181,804,0:.:1:1:.:.:.:-0.068504
chr22	36700175	.	A	G	6140.185	REJECT	NS=2;DP=403;DPB=460.0;AC=2;AN=4;AF=0.5;RO=241;AO=219;PRO=0.0;PAO=0.0;QR=9194;QA=8325;PQR=0.0;PQA=0.0;SRF=122;SRR=119;SAF=104;SAR=115;SRP=3.09139;SAP=4.21006;AB=0.476087;ABP=5.29507;RUN=1;RPP=9.20742;RPPR=5.03761;RPL=122.0;RPR=97.0;EPP=3.09954;EPPR=3.74013;DPRA=0.0;ODDS=325.565;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.03;Dels=0.0;FS=0.9625;HaplotypeScore=8.8212;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.6745;QD=16.47;ReadPosRankSum=0.1045;SOR=0.712;ClippingRankSum=-0.997	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:112:62:2329:52:1913:-141.688,0.0,-178.749:52:46:112:58,52:1711,0,2125:1:.:1:.:.:.:-0.0124524	0/1:129.501:346:179:6865:167:6412:-483.026,0.0,-523.746:167:48:346:179,167:6130,0,6600:.:1:1:.:.:.:-0.068504
chr22	36708084	.	C	T	4465.91	REJECT	NS=2;DP=300;DPB=344.0;AC=2;AN=4;AF=0.5;RO=181;AO=162;PRO=0.0;PAO=0.0;QR=6896;QA=6155;PQR=0.0;PQA=0.0;SRF=113;SRR=68;SAF=115;SAR=47;SRP=27.3044;SAP=64.9911;AB=0.47093;ABP=5.53527;RUN=1;RPP=16.7362;RPPR=19.4343;RPL=65.0;RPR=97.0;EPP=9.49791;EPPR=11.7562;DPRA=0.0;ODDS=233.561;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.222;Dels=0.0;FS=5.8385;HaplotypeScore=4.9233;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.052;QD=15.99;ReadPosRankSum=0.841;SOR=1.165;ClippingRankSum=-0.626	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:88:51:1948:37:1429:-104.788,0.0,-151.516:37:42:88:51,37:1305,0,1848:1:.:1:.:.:.:-0.0124524	0/1:129.501:256:130:4948:125:4726:-356.087,0.0,-376.039:125:49:255:130,125:4500,0,4746:.:1:1:.:.:.:-0.068504
chr22	36710183	.	T	C	5116.13	REJECT	NS=2;DP=313;DPB=362.0;AC=2;AN=4;AF=0.5;RO=178;AO=184;PRO=0.0;PAO=0.0;QR=6899;QA=7006;PQR=0.0;PQA=0.0;SRF=108;SRR=70;SAF=120;SAR=64;SRP=20.6261;SAP=40.0197;AB=0.508287;ABP=3.22625;RUN=1;RPP=64.1892;RPPR=28.824;RPL=56.0;RPR=128.0;EPP=15.095;EPPR=38.5834;DPRA=0.0;ODDS=291.223;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.3945;Dels=0.0;FS=2.547;HaplotypeScore=3.9574;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.027;QD=17.185;ReadPosRankSum=0.523;SOR=0.781;ClippingRankSum=-1.22	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:122.823:96:52:2007:45:1732:-129.616,0.0,-154.368:44:46:96:51,44:1465,0,1764:1:.:1:.:.:.:-0.0124524	0/1:122.823:264:126:4892:139:5274:-402.624,0.0,-368.267:139:52:264:125,139:5110,0,4660:.:1:1:.:.:.:-0.068504
chr22	38369976	.	A	G	4431.8	REJECT	NS=2;DP=307;DPB=347.0;AC=2;AN=4;AF=0.5;RO=183;AO=164;PRO=0.0;PAO=0.0;QR=6972;QA=6159;PQR=0.0;PQA=0.0;SRF=104;SRR=79;SAF=67;SAR=97;SRP=10.4265;SAP=14.9269;AB=0.472622;ABP=5.26938;RUN=1;RPP=13.391;RPPR=6.43957;RPL=68.0;RPR=96.0;EPP=7.30028;EPPR=3.11709;DPRA=0.0;ODDS=254.753;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993902;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.309;Dels=0.0;FS=23.3185;HaplotypeScore=8.8397;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.8155;QD=17.125;ReadPosRankSum=1.781;SOR=1.1375;ClippingRankSum=-0.77	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:119.56:81:40:1487:41:1579:-120.216,0.0,-111.937:41:51:81:40,41:1484,0,1404:1:.:1:.:.:.:-0.0124524	0/1:119.56:266:143:5485:123:4580:-339.942,0.0,-421.742:123:46:266:143,123:4376,0,5355:.:1:1:.:.:.:-0.068504
chr22	39632920	.	C	G	14202.0	REJECT	NS=2;DP=376;DPB=429.0;AC=4;AN=4;AF=1.0;RO=1;AO=428;PRO=0.0;PAO=0.0;QR=2;QA=16291;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=203;SAR=225;SRP=5.18177;SAP=5.46589;AB=0.0;ABP=0.0;RUN=1;RPP=6.44001;RPPR=5.18177;RPL=201.0;RPR=227.0;EPP=5.03971;EPPR=5.18177;DPRA=0.0;ODDS=68.5248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990654;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=6.8322;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.555;SOR=0.881	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:102:0:0:103:3865:-347.868,-27.8849,0.0:102:100:102:0,101:4229,303,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:325:1:2:325:12426:-1117.48,-87.7265,0.0:324:100:325:1,323:13820,960,0:.:1:1:.:.:.:-0.068504
chr22	39632931	.	A	G	14561.7	REJECT	NS=2;DP=386;DPB=441.0;AC=4;AN=4;AF=1.0;RO=1;AO=440;PRO=0.0;PAO=0.0;QR=40;QA=16761;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=196;SAR=244;SRP=5.18177;SAP=14.3809;AB=0.0;ABP=0.0;RUN=1;RPP=5.39892;RPPR=5.18177;RPL=209.0;RPR=231.0;EPP=11.7159;EPPR=5.18177;DPRA=0.0;ODDS=70.9933;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993182;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.115;Dels=0.0;FS=1.6625;HaplotypeScore=5.8654;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=1.669;QD=28.835;ReadPosRankSum=-0.47;SOR=0.8625	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:105:0:0:107:4008:-360.708,-28.9569,0.0:105:100:105:0,103:4255,309,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:333:1:40:333:12753:-1143.46,-86.858,0.0:332:100:333:1,331:14166,946,0:.:1:1:.:.:.:-0.068504
chr22	39633622	.	C	T	14153.15	REJECT	NS=2;DP=390;DPB=449.0;AC=4;AN=4;AF=1.0;RO=0;AO=448;PRO=0.0;PAO=0.0;QR=0;QA=16498;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=226;SAR=222;SRP=0.0;SAP=3.08785;AB=0.0;ABP=0.0;RUN=1;RPP=3.70827;RPPR=0.0;RPL=218.0;RPR=230.0;EPP=4.94911;EPPR=0.0;DPRA=0.0;ODDS=76.3373;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993304;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=11.6231;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.32;SOR=0.902	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:115:0:0:117:4323:-388.664,-31.2778,0.0:115:100:115:0,113:4564,339,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:331:0:0:331:12175:-1094.93,-89.4387,0.0:331:100:331:0,331:13544,954,0:.:1:1:.:.:.:-0.068504
chr22	39633749	.	T	C	13910.95	REJECT	NS=2;DP=367;DPB=415.0;AC=4;AN=4;AF=1.0;RO=1;AO=414;PRO=0.0;PAO=0.0;QR=39;QA=15854;PQR=0.0;PQA=0.0;SRF=0;SRR=1;SAF=202;SAR=212;SRP=5.18177;SAP=3.53481;AB=0.0;ABP=0.0;RUN=1;RPP=3.53481;RPPR=5.18177;RPL=202.0;RPR=212.0;EPP=3.19912;EPPR=5.18177;DPRA=0.0;ODDS=62.9657;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.997585;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=7.7792;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=29.295;SOR=0.7565	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:93:0:0:94:3602:-324.229,-25.4706,0.0:93:100:93:0,92:3963,277,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:320:1:39:320:12252:-1098.42,-83.3865,0.0:320:100:320:0,320:13658,942,0:.:1:1:.:.:.:-0.068504
chr22	39634434	.	A	C	21393.75	REJECT	NS=2;DP=566;DPB=648.0;AC=4;AN=4;AF=1.0;RO=0;AO=648;PRO=0.0;PAO=0.0;QR=0;QA=24736;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=310;SAR=338;SRP=0.0;SAP=5.63751;AB=0.0;ABP=0.0;RUN=1;RPP=10.1011;RPPR=0.0;RPL=347.0;RPR=301.0;EPP=4.09604;EPPR=0.0;DPRA=0.0;ODDS=106.585;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993827;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=8.7207;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.725;SOR=0.766	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:163:0:0:164:6224:-559.997,-44.4144,0.0:163:100:163:0,163:6591,489,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:484:0:0:484:18512:-1664.37,-130.616,0.0:484:100:484:0,484:20628,1424,0:.:1:1:.:.:.:-0.068504
chr22	39634923	.	A	G	13423.849999999999	REJECT	NS=2;DP=353;DPB=405.0;AC=4;AN=4;AF=1.0;RO=0;AO=405;PRO=0.0;PAO=0.0;QR=0;QA=15577;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=231;SAR=174;SRP=0.0;SAP=20.4303;AB=0.0;ABP=0.0;RUN=1;RPP=3.65906;RPPR=0.0;RPL=197.0;RPR=208.0;EPP=3.05855;EPPR=0.0;DPRA=0.0;ODDS=69.2211;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.995062;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.71;SOR=1.1025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.758:101:0:0:104:3986:-358.785,-28.1873,0.0:101:100:101:0,98:4139,295,0:1:.:1:.:.:.:-0.0124524	1/1:125.758:301:0:0:301:11591:-1042.53,-81.5106,0.0:301:100:301:0,301:12923,891,0:.:1:1:.:.:.:-0.068504
chr22	39635858	.	G	GCA	7752.764999999999	REJECT	NS=2;DP=236;DPB=336.786;AC=4;AN=4;AF=1.0;RO=6;AO=232;PRO=41.0;PAO=50.0;QR=232;QA=8627;PQR=1416.0;PQA=1716.0;SRF=3;SRR=3;SAF=125;SAR=107;SRP=3.0103;SAP=6.04287;AB=0.0;ABP=0.0;RUN=1;RPP=6.04287;RPPR=4.45795;RPL=125.0;RPR=107.0;EPP=4.35811;EPPR=8.80089;DPRA=0.0;ODDS=35.7342;GTI=0;TYPE=ins;CIGAR=1M2I13M;NUMALT=1;MEANALT=5.0;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=0.99569;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.0505;FS=0.886;MLEAC=2;MLEAF=1.0;MQ=60.36;MQRankSum=1.0645;QD=33.13;RPA=6,7;RU=CA;ReadPosRankSum=-0.688;SOR=0.4725;STR;ClippingRankSum=-0.162	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:116.856:64:1:39:57:2083:-190.369,-12.741,0.0:61:98:62:1,66:2438,162,0:1:.:1:.:.:.:-0.0124524	1/1:120.977:205:5:193:175:6544:-592.03,-33.2575,0.0:178:97:183:5,182:7743,341,0:.:1:1:.:.:.:-0.068504
chr22	39636354	.	C	CT	1393.6	REJECT	NS=2;DP=428;DPB=496.235;AC=2;AN=2;AF=0.0;RO=295;AO=25;PRO=60.5;PAO=52.5;QR=10973;QA=791;PQR=2134.83;PQA=1814.83;SRF=101;SRR=194;SAF=8;SAR=17;SRP=66.6749;SAP=10.0459;AB=0.0584112;ABP=727.937;RUN=1;RPP=3.09716;RPPR=3.01766;RPL=12.0;RPR=13.0;EPP=3.79203;EPPR=4.66651;DPRA=0.0;ODDS=91.2565;GTI=0;TYPE=ins;CIGAR=1M1I16M;NUMALT=2;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.979661;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:131.736:115:79:2904:6:175:-40.1206,-47.1361,-294.245:6:6:105:.:.:1:.:.:.:-0.0124524	./1:131.736:313:216:8069:19:616:-105.019,-112.368,-795.844:19:7:288:.:.:1:.:.:.:-0.068504
chr22	39636354	.	CT	C	1393.6	REJECT	NS=2;DP=428;DPB=496.235;AC=2;AN=4;AF=0.5;RO=295;AO=73;PRO=60.5;PAO=47.0;QR=10973;QA=2774;PQR=2134.83;PQA=1635.33;SRF=101;SRR=194;SAF=31;SAR=42;SRP=66.6749;SAP=6.60959;AB=0.170561;ABP=406.478;RUN=1;RPP=3.27802;RPPR=3.01766;RPL=35.0;RPR=38.0;EPP=3.04005;EPPR=4.66651;DPRA=0.0;ODDS=91.2565;GTI=0;TYPE=del;CIGAR=1M1D15M;NUMALT=2;MEANALT=14.0;LEN=1;MQM=60.411;MQMR=60.0;PAIRED=0.986301;PAIREDR=0.979661;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=2.768;FS=3.707;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.045;QD=1.56;ReadPosRankSum=0.989;SOR=0.302;ClippingRankSum=0.725	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:115.368:110:79:2904:20:759:-40.1206,0.0,-249.304:21:20:105:83,22:241,0,1889:1:.:1:.:.:.:-0.0124524	0/1:131.736:313:216:8069:53:2015:-105.019,0.0,-723.154:53:18:288:.:.:.:.:1:.:.:.:-0.068504
chr22	39636510	.	T	TG	8730.22	REJECT	NS=2;DP=279;DPB=374.444;AC=4;AN=4;AF=1.0;RO=0;AO=301;PRO=25.5;PAO=31.5;QR=0;QA=10770;PQR=889.5;PQA=1069.5;SRF=0;SRR=0;SAF=159;SAR=142;SRP=0.0;SAP=5.0952;AB=0.0;ABP=0.0;RUN=1;RPP=3.19065;RPPR=0.0;RPL=153.0;RPR=148.0;EPP=8.26945;EPPR=0.0;DPRA=0.0;ODDS=54.7542;GTI=0;TYPE=ins;CIGAR=1M1I8M;NUMALT=1;MEANALT=4.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996678;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.14;QD=29.48;RPA=6,7;RU=G;SOR=0.831;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:122.476:80:0:0:78:2761:-257.818,-21.9044,0.0:79:100:79:0,81:2597,252,0:1:.:1:.:.:.:-0.0124524	1/1:122.476:239:0:0:223:8009:-727.016,-60.7183,0.0:225:100:225:0,227:7697,683,0:.:1:1:.:.:.:-0.068504
chr22	39636586	.	C	G	13094.3	REJECT	NS=2;DP=350;DPB=407.0;AC=4;AN=4;AF=1.0;RO=0;AO=407;PRO=0.0;PAO=0.0;QR=0;QA=15335;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=255;SAR=152;SRP=0.0;SAP=59.6126;AB=0.0;ABP=0.0;RUN=1;RPP=3.27173;RPPR=0.0;RPL=200.0;RPR=207.0;EPP=9.54606;EPPR=0.0;DPRA=0.0;ODDS=75.2889;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.1229;MQMR=0.0;PAIRED=0.992629;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8983;MLEAC=2;MLEAF=1.0;MQ=60.15;QD=32.16;SOR=1.268	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:113:0:0:114:4189:-376.969,-30.8225,0.0:113:100:113:0,112:4362,334,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:293:0:0:293:11146:-1002.6,-79.3575,0.0:293:100:293:0,293:12527,876,0:.:1:1:.:.:.:-0.068504
chr22	39636762	.	G	A	3676.96	PASS	SOMATIC;NS=2;DP=537;DPB=537.0;AC=1;AN=3;AF=0.25;RO=395;AO=141;PRO=0.0;PAO=0.0;QR=15102;QA=5345;PQR=0.0;PQA=0.0;SRF=184;SRR=211;SAF=58;SAR=83;SRP=7.0179;SAP=12.6356;AB=0.359694;ABP=70.0379;RUN=1;RPP=11.1572;RPPR=8.99697;RPL=82.0;RPR=59.0;EPP=3.0257;EPPR=8.99697;DPRA=2.70345;ODDS=91.3915;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=2.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992908;PAIREDR=0.989873;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.26;Dels=0.0;FS=2.808;HaplotypeScore=10.6805;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-2.073;QD=12.3;ReadPosRankSum=0.471;SOR=0.858	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:141:145:5505:0:0:0.0,-39.2649,-495.334:0:0:141:137,0:.:0.0:0:.:.:.:0:.:.:0:-0.0124524	0/1:129.501:391:250:9597:141:5345:-374.866,0.0,-757.258:141:36:390:240,136:37.0:0.364:2:4838,0,9532:.:1:1:.:.:1:-0.068504
chr22	39636899	.	GTC	G	367.312	PASS	SOMATIC;NS=2;DP=286;DPB=361.227;AC=1;AN=4;AF=0.25;RO=222;AO=39;PRO=92.0;PAO=79.0;QR=8094;QA=1207;PQR=3030.5;PQA=2568.5;SRF=98;SRR=124;SAF=14;SAR=25;SRP=9.62253;SAP=9.74743;AB=0.164319;ABP=211.482;RUN=1;RPP=7.52028;RPPR=3.36243;RPL=24.0;RPR=15.0;EPP=7.52028;EPPR=11.8136;DPRA=0.0;ODDS=14.9326;GTI=0;TYPE=del;CIGAR=1M2D19M;NUMALT=1;MEANALT=11.0;LEN=2;MQM=59.4872;MQMR=62.4324;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:64.8516:73:63:2307:4:135:0.0,-6.8199,-204.941:4:6:67:.:.:0:.:.:.:-0.0124524	0/1:138.665:213:159:5787:35:1072:-43.6082,0.0,-500.297:35:18:194:.:.:1:.:.:.:-0.068504
chr22	39636918	.	TCAGATGCGCACACACA	AGATGCGCGCG	.	PASS	SOMATIC;AC=1;AN=4;END=39636934;HOMLEN=0;SVLEN=-17;SVTYPE=RPL;NTLEN=11	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.0124524	0/1:47,21:21:31:68:.:.:.:1:.:.:-0.068504
chr22	39636928	.	A	G	6099.285	PASS	DP=171;AC=4;AN=4;AF=1.0;MQ0=0;ALERT;BaseQRankSum=0.9925;Dels=0.03;FS=1.093;HaplotypeScore=47.5877;MLEAC=2;MLEAF=1.0;MQ=61.925;MQRankSum=-0.569;QD=26.775;ReadPosRankSum=-0.35;SOR=0.375;ClippingRankSum=0.109	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:3,53:56:64.0:1851,64,0:53:95:56:1:.:.:.:.:.:-0.0124524	1/1:1,249:250:99.0:10404,728,0:249:100:250:.:1:.:.:.:.:-0.068504
chr22	39636928	.	ACA	GCG	10554.8	REJECT	NS=2;DP=327;DPB=332.333;AC=4;AN=4;AF=1.0;RO=1;AO=318;PRO=0.0;PAO=9.0;QR=35;QA=11498;PQR=0.0;PQA=314.0;SRF=1;SRR=0;SAF=157;SAR=161;SRP=5.18177;SAP=3.11956;AB=0.0;ABP=0.0;RUN=1;RPP=3.25613;RPPR=5.18177;RPL=162.0;RPR=156.0;EPP=8.36387;EPPR=5.18177;DPRA=0.0;ODDS=49.3574;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=1;MEANALT=2.0;LEN=3;MQM=61.4717;MQMR=60.0;PAIRED=0.993711;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:141.982:79:1:35:78:2848:-262.627,-18.6575,0.0:78:99:79:.:.:1:.:.:.:-0.0124524	1/1:141.982:248:0:0:240:8650:-796.569,-66.4498,0.0:240:100:240:.:.:1:.:.:.:-0.068504
chr22	39636930	.	A	G	6249.77	PASS	DP=172;AC=4;AN=4;AF=1.0;MQ0=0;ALERT;BaseQRankSum=0.9805;Dels=0.02;FS=3.38;HaplotypeScore=47.579;MLEAC=2;MLEAF=1.0;MQ=62.12;MQRankSum=-0.175;QD=32.98;ReadPosRankSum=-0.7895;SOR=0.3485;ClippingRankSum=1.299	GT:AD:DP:GQ:PL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:1,71:72:99.0:2609,178,0:71:99:72:1:.:.:.:.:.:-0.0124524	1/1:7,248:255:99.0:9947,509,0:248:97:255:.:1:.:.:.:.:-0.068504
chr22	39636944	.	ACACT	A	8427.7	REJECT	NS=2;DP=323;DPB=192.0;AC=4;AN=4;AF=0.75;RO=14;AO=301;PRO=6.0;PAO=11.0;QR=480;QA=9696;PQR=183.0;PQA=347.0;SRF=4;SRR=10;SAF=147;SAR=154;SRP=8.59409;SAP=3.3638;AB=0.0;ABP=0.0;RUN=1;RPP=3.3638;RPPR=8.59409;RPL=154.0;RPR=147.0;EPP=3.59465;EPPR=3.63072;DPRA=0.0;ODDS=19.4238;GTI=0;TYPE=del;CIGAR=1M4D3M;NUMALT=3;MEANALT=5.0;LEN=4;MQM=63.9801;MQMR=60.0;PAIRED=0.996678;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;END=39636948;HOMLEN=1;HOMSEQ=C;SVLEN=-4;SVTYPE=DEL;BaseQRankSum=0.4595;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=63.535;MQRankSum=0.2295;QD=23.545;ReadPosRankSum=1.4635;SOR=0.272;ClippingRankSum=1.189	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:91.67685:72:5:183:75:2302:-190.559,-5.04515,0.0:75:86:76:6,61:1461,0,161:1:.:1:1:.:.:-0.0124524	1/1:129.501:274:9:297:226:7394:-653.188,-37.9776,0.0:211:88:228:0,205:15202,1142,300:.:1:1:1:.:.:-0.068504
chr22	39636944	.	ACACTCT	A	8427.7	REJECT	SOMATIC;NS=2;DP=355;DPB=192.0;AC=1;AN=3;AF=0.0;RO=14;AO=13;PRO=6.0;PAO=2.0;QR=480;QA=393;PQR=183.0;PQA=44.5;SRF=4;SRR=10;SAF=5;SAR=8;SRP=8.59409;SAP=4.51363;AB=0.0;ABP=0.0;RUN=1;RPP=7.18621;RPPR=8.59409;RPL=9.0;RPR=4.0;EPP=3.17734;EPPR=3.63072;DPRA=0.0;ODDS=19.4238;GTI=0;TYPE=del;CIGAR=1M6D1M;NUMALT=3;MEANALT=5.0;LEN=6;MQM=60.0;MQMR=60.0;PAIRED=0.923077;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.79;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=63.56;MQRankSum=1.504;QD=31.27;ReadPosRankSum=0.593;SOR=0.237	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:84.3537:87:5:183:5:157:-190.559,-179.674,-199.035:5:6:87:.:.:.:.:.:.:.:.:-0.0124524	./1:129.501:274:9:297:8:236:-653.188,-640.342,-702.426:18:7:242:1,28:15202,7763,7209:.:1:.:.:.:.:-0.068504
chr22	39636946	.	ACTCT	A	8427.7	REJECT	NS=2;DP=355;DPB=192.0;AC=0;AN=4;AF=0.0;RO=14;AO=16;PRO=6.0;PAO=4.0;QR=480;QA=477;PQR=183.0;PQA=118.5;SRF=4;SRR=10;SAF=11;SAR=5;SRP=8.59409;SAP=7.89611;AB=0.0;ABP=0.0;RUN=1;RPP=29.6108;RPPR=8.59409;RPL=1.0;RPR=15.0;EPP=5.18177;EPPR=3.63072;DPRA=0.0;ODDS=19.4238;GTI=0;TYPE=del;CIGAR=3M4D1M;NUMALT=3;MEANALT=5.0;LEN=4;MQM=60.625;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:84.3537:87:5:183:2:46:-190.559,-188.854,-209.031:2:2:87:.:.:.:.:.:.:-0.0124524	0/0:160.002:268:9:297:14:431:-653.188,-618.31,-678.253:14:5:257:.:.:.:.:.:.:-0.068504
chr22	39639257	.	GTCTCTC	G	6845.43	REJECT	NS=2;DP=136;DPB=211.085;AC=3;AN=3;AF=0.75;RO=0;AO=97;PRO=38.0833;PAO=75.5833;QR=0;QA=2935;PQR=1326.25;PQA=2562.75;SRF=0;SRR=0;SAF=43;SAR=54;SRP=0.0;SAP=5.71904;AB=0.698113;ABP=39.1469;RUN=1;RPP=5.71904;RPPR=0.0;RPL=54.0;RPR=43.0;EPP=6.79359;EPPR=0.0;DPRA=0.0;ODDS=5.9259;GTI=0;TYPE=del;CIGAR=1M6D40M;NUMALT=3;MEANALT=10.5;LEN=6;MQM=60.6804;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.6635;FS=0.0;MLEAC=1;MLEAF=0.75;MQ=63.545;MQRankSum=-0.972;QD=19.195;RPA=10,7;RU=TC;ReadPosRankSum=0.75;SOR=0.4645;STR;ClippingRankSum=0.681	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:72.93805:33:0:0:23:674:-177.65,-16.6972,0.0:25:82:31:10,27:818,0,257:1:.:1:.:.:.:-0.0124524	./1:62.37375:160:0:0:74:2261:-515.938,-54.776,-7.42915:120:89:130:3,167:11825,453,0:.:1:1:.:.:.:-0.068504
chr22	39639257	.	GTCTCTCTC	G	6845.43	REJECT	NS=2;DP=136;DPB=211.085;AC=0;AN=4;AF=0.0;RO=0;AO=6;PRO=38.0833;PAO=45.0833;QR=0;QA=169;PQR=1326.25;PQA=1569.42;SRF=0;SRR=0;SAF=4;SAR=2;SRP=0.0;SAP=4.45795;AB=0.0566038;ABP=184.021;RUN=1;RPP=8.80089;RPPR=0.0;RPL=1.0;RPR=5.0;EPP=8.80089;EPPR=0.0;DPRA=3.53333;ODDS=5.9259;GTI=0;TYPE=del;CIGAR=1M8D38M;NUMALT=3;MEANALT=14.0;LEN=8;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:46.8761:30:0:0:0:0:-177.65,-166.481,-165.397:0:0:25:.:.:.:.:.:.:-0.0124524	0/0:25.7475:106:0:0:6:169:-515.938,-491.389,-523.75:6:7:91:.:.:.:.:.:.:-0.068504
chr22	39639271	.	CTCTCTCTT	C	.	PASS	SOMATIC;AC=1;AN=4;END=39639279;HOMLEN=7;HOMSEQ=TCTCTCT;SVLEN=-8;SVTYPE=DEL	GT:AD:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:.:.:.:.:.:.:.:.:.:.:-0.0124524	0/1:16,28:28:64:44:.:.:.:1:.:.:-0.068504
chr22	39639273	.	CTCTCTTTC	T	6845.43	REJECT	SOMATIC;NS=2;DP=136;DPB=211.085;AC=1;AN=3;AF=0.25;RO=0;AO=13;PRO=38.0833;PAO=70.25;QR=0;QA=450;PQR=1326.25;PQA=2304.58;SRF=0;SRR=0;SAF=5;SAR=8;SRP=0.0;SAP=4.51363;AB=0.103774;ABP=147.557;RUN=1;RPP=4.51363;RPPR=0.0;RPL=8.0;RPR=5.0;EPP=7.18621;EPPR=0.0;DPRA=0.0;ODDS=5.9259;GTI=0;TYPE=complex;CIGAR=15M8D1M1X22M;NUMALT=3;MEANALT=10.5;LEN=39;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:46.8761:30:0:0:2:72:-177.65,-72.7309,-134.874:2:8:25:.:.:.:.:.:.:-0.0124524	./1:25.7475:106:0:0:11:378:-515.938,-213.967,-353.77:11:12:91:.:.:1:.:.:.:-0.068504
chr22	39639853	.	G	T	7985.695000000001	REJECT	NS=2;DP=219;DPB=250.0;AC=4;AN=4;AF=1.0;RO=0;AO=250;PRO=0.0;PAO=0.0;QR=0;QA=9291;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=70;SAR=180;SRP=0.0;SAP=108.11;AB=0.0;ABP=0.0;RUN=1;RPP=16.9077;RPPR=0.0;RPL=145.0;RPR=105.0;EPP=4.26107;EPPR=0.0;DPRA=0.0;ODDS=42.936;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.29;SOR=1.8575	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:62:0:0:62:2309:-207.936,-16.7718,0.0:62:100:62:0,62:2507,185,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:188:0:0:188:6982:-628.165,-50.8894,0.0:188:100:188:0,188:7801,554,0:.:1:1:.:.:.:-0.068504
chr22	41513727	.	G	A	3130.01	PASS	SOMATIC;NS=2;DP=402;DPB=402.0;AC=1;AN=3;AF=0.25;RO=285;AO=117;PRO=0.0;PAO=0.0;QR=10887;QA=4438;PQR=0.0;PQA=0.0;SRF=142;SRR=143;SAF=60;SAR=57;SRP=3.01792;SAP=3.17734;AB=0.392617;ABP=32.8571;RUN=1;RPP=4.51363;RPPR=4.72462;RPL=54.0;RPR=63.0;EPP=3.47429;EPPR=4.29794;DPRA=2.86538;ODDS=65.8392;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.991453;PAIREDR=0.989474;technology.ILLUMINA=1.0;MQ0=0;VT=SNP;BaseQRankSum=-0.589;Dels=0.0;FS=6.245;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.222;QD=13.61;ReadPosRankSum=1.458;SOR=0.552	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:BQ:FA:SS:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0:160.002:103:104:3970:0:0:0.0,-28.1676,-357.314:0:0:103:102,0:.:0.0:0:.:.:.:0:.:.:0:-0.0124524	0/1:129.501:298:181:6917:117:4438:-318.488,0.0,-541.477:117:39:298:173,112:38.0:0.392:2:4085,0,6836:.:1:1:.:.:1:-0.068504
chr22	41537234	.	G	T	11342.2	REJECT	NS=2;DP=299;DPB=339.0;AC=4;AN=4;AF=1.0;RO=0;AO=339;PRO=0.0;PAO=0.0;QR=0;QA=13035;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=89;SAR=250;SRP=0.0;SAP=169.048;AB=0.0;ABP=0.0;RUN=1;RPP=39.0414;RPPR=0.0;RPL=207.0;RPR=132.0;EPP=5.32269;EPPR=0.0;DPRA=0.0;ODDS=53.6194;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.9941;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.8711;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=30.315;SOR=2.3495	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:78:0:0:79:3014:-271.376,-21.4115,0.0:78:100:78:0,78:3262,234,0:1:.:1:.:.:.:-0.0124524	1/1:129.501:260:0:0:260:10021:-901.364,-70.4059,0.0:260:100:260:0,260:11237,777,0:.:1:1:.:.:.:-0.068504
chr22	41548008	.	A	G	6159.82	REJECT	NS=2;DP=432;DPB=482.0;AC=2;AN=4;AF=0.5;RO=263;AO=219;PRO=0.0;PAO=0.0;QR=10205;QA=8400;PQR=0.0;PQA=0.0;SRF=115;SRR=148;SAF=95;SAR=124;SRP=12.0017;SAP=11.3492;AB=0.454357;ABP=11.7322;RUN=1;RPP=9.20742;RPPR=3.21671;RPL=97.0;RPR=122.0;EPP=18.0916;EPPR=5.39644;DPRA=0.0;ODDS=296.669;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990868;PAIREDR=0.996198;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.7215;Dels=0.0;FS=2.205;HaplotypeScore=6.8568;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.349;QD=16.13;ReadPosRankSum=0.326;SOR=0.6145;ClippingRankSum=1.258	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:53:2085:46:1744:-130.152,0.0,-160.828:46:47:97:50,46:1565,0,1802:1:.:1:.:.:.:-0.0124524	0/1:129.501:383:210:8120:173:6656:-494.897,0.0,-626.577:173:45:383:210,173:6319,0,7939:.:1:1:.:.:.:-0.068504
chr22	41551039	.	T	A	4743.015	REJECT	NS=2;DP=343;DPB=390.0;AC=2;AN=4;AF=0.5;RO=202;AO=188;PRO=0.0;PAO=0.0;QR=7640;QA=6846;PQR=0.0;PQA=0.0;SRF=136;SRR=66;SAF=123;SAR=65;SRP=55.6846;SAP=41.8658;AB=0.482051;ABP=4.1016;RUN=1;RPP=17.9796;RPPR=8.21323;RPL=76.0;RPR=112.0;EPP=8.60069;EPPR=15.4371;DPRA=0.0;ODDS=278.634;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.989362;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.163;Dels=0.0;FS=0.732;HaplotypeScore=18.4612;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.1035;QD=16.88;ReadPosRankSum=-0.8455;SOR=0.6525;ClippingRankSum=-0.865	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.6295:89:44:1642:48:1817:-138.653,0.0,-122.891:46:52:89:41,45:1642,0,1450:1:.:1:.:.:.:-0.0124524	0/1:118.6295:297:158:5998:140:5029:-371.664,0.0,-458.925:139:47:297:158,138:4531,0,5879:.:1:1:.:.:.:-0.068504
chr22	41568480	.	T	C	4093.48	REJECT	NS=2;DP=234;DPB=267.0;AC=2;AN=4;AF=0.5;RO=118;AO=149;PRO=0.0;PAO=0.0;QR=4574;QA=5637;PQR=0.0;PQA=0.0;SRF=78;SRR=40;SAF=112;SAR=37;SRP=29.5832;SAP=84.987;AB=0.558052;ABP=10.826;RUN=1;RPP=103.408;RPPR=45.4092;RPL=33.0;RPR=116.0;EPP=9.43728;EPPR=5.66023;DPRA=0.0;ODDS=199.511;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.1445;Dels=0.0;FS=5.2565;HaplotypeScore=1.933;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.649;QD=19.345;ReadPosRankSum=-0.399;SOR=1.252;ClippingRankSum=0.019	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:66:30:1176:36:1338:-102.607,0.0,-88.0275:36:55:66:30,36:1211,0,1045:1:.:1:.:.:.:-0.0124524	0/1:129.501:201:88:3398:113:4299:-332.317,0.0,-251.24:113:56:201:88,113:4204,0,3183:.:1:1:.:.:.:-0.068504
chr22	41572541	.	C	T	1966.03	REJECT	NS=2;DP=311;DPB=358.0;AC=2;AN=4;AF=0.5;RO=264;AO=94;PRO=0.0;PAO=0.0;QR=10117;QA=3542;PQR=0.0;PQA=0.0;SRF=119;SRR=145;SAF=45;SAR=49;SRP=8.57059;SAP=3.37991;AB=0.26257;ABP=178.305;RUN=1;RPP=12.2506;RPPR=32.6213;RPL=57.0;RPR=37.0;EPP=10.4949;EPPR=8.57059;DPRA=0.0;ODDS=135.248;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.8905;Dels=0.0;FS=3.6545;HaplotypeScore=7.8792;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.4715;QD=11.33;ReadPosRankSum=-0.0435;SOR=0.817;ClippingRankSum=-0.532	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.239:92:38:1415:55:2085:-162.511,0.0,-102.183:55:59:92:36,55:1815,0,1180:1:.:1:.:.:.:-0.0124524	0/1:118.239:265:226:8702:39:1457:-59.2792,0.0,-710.98:39:15:265:226,39:832,0,8970:.:1:1:.:.:.:-0.068504
chr22	41574969	.	TGTA	T	3413.48	REJECT	NS=2;DP=258;DPB=246.25;AC=2;AN=4;AF=0.5;RO=147;AO=130;PRO=23.0;PAO=15.0;QR=5528;QA=4795;PQR=784.5;PQA=510.5;SRF=47;SRR=100;SAF=38;SAR=92;SRP=44.5046;SAP=51.7181;AB=0.467626;ABP=5.54108;RUN=1;RPP=24.6582;RPPR=23.2331;RPL=83.0;RPR=47.0;EPP=3.0103;EPPR=4.20683;DPRA=0.0;ODDS=204.58;GTI=0;TYPE=del;CIGAR=1M3D4M;NUMALT=1;MEANALT=1.5;LEN=3;MQM=60.2308;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;END=41574972;HOMLEN=3;HOMSEQ=GTA;SVLEN=-3;SVTYPE=DEL;BaseQRankSum=2.091;FS=1.8305;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.1325;QD=19.58;RPA=2,1;RU=GTA;ReadPosRankSum=1.157;SOR=0.974;STR;ClippingRankSum=0.995	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.816:68:33:1226:32:1221:-91.7849,0.0,-98.5443:32:51:65:30,31:1407,0,1522:1:.:1:1:.:.:-0.0124524	0/1:121.816:226:114:4302:98:3574:-262.489,0.0,-346.39:98:46:212:108,94:5089,0,6409:.:1:1:1:.:.:-0.068504
chrX	15818114	.	AT	A	6466.995	REJECT	NS=2;DP=188;DPB=196.444;AC=4;AN=4;AF=1.0;RO=0;AO=197;PRO=16.0;PAO=28.0;QR=0;QA=7517;PQR=589.5;PQA=1028.5;SRF=0;SRR=0;SAF=78;SAR=119;SRP=0.0;SAP=21.5395;AB=0.0;ABP=0.0;RUN=1;RPP=148.786;RPPR=0.0;RPL=156.0;RPR=41.0;EPP=7.87131;EPPR=0.0;DPRA=0.0;ODDS=36.1829;GTI=0;TYPE=del;CIGAR=1M1D7M;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.969543;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;END=15818115;HOMLEN=3;HOMSEQ=TTT;SVLEN=-1;SVTYPE=DEL;FS=0.0;MLEAC=2;MLEAF=1.0;MQ=60.06;QD=31.655;RPA=4,3;RU=T;SOR=1.144;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:118.254:50:0:0:48:1817:-173.797,-13.839,0.0:50:100:51:10,50:1758,154,0:1:.:1:1:.:.:-0.000200505	1/1:121.8785:163:0:0:149:5700:-542.263,-42.8015,0.0:149:100:153:43,149:6026,460,0:.:1:1:1:.:.:-0.0368108
chrX	15838366	.	C	T	13989.599999999999	REJECT	NS=2;DP=367;DPB=423.0;AC=4;AN=4;AF=1.0;RO=0;AO=423;PRO=0.0;PAO=0.0;QR=0;QA=16281;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=235;SAR=188;SRP=0.0;SAP=14.3502;AB=0.0;ABP=0.0;RUN=1;RPP=3.26184;RPPR=0.0;RPL=208.0;RPR=215.0;EPP=36.6912;EPPR=0.0;DPRA=0.0;ODDS=74.2366;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.9409;MQMR=0.0;PAIRED=0.990544;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=5.8324;MLEAC=2;MLEAF=1.0;MQ=59.945;QD=30.855;SOR=0.9155	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.8715:109:0:0:112:4320:-388.807,-30.3655,0.0:109:100:109:0,107:4414,322,0:1:.:1:.:.:.:-0.000200505	1/1:128.8715:311:0:0:311:11961:-1075.71,-84.2461,0.0:311:100:311:0,311:13450,933,0:.:1:1:.:.:.:-0.0368108
chrX	22505654	.	C	T	9759.52	REJECT	NS=2;DP=398;DPB=455.0;AC=2;AN=4;AF=0.5;RO=134;AO=321;PRO=0.0;PAO=0.0;QR=5139;QA=12316;PQR=0.0;PQA=0.0;SRF=57;SRR=77;SAF=137;SAR=184;SRP=9.49231;SAP=17.9535;AB=0.705495;ABP=169.899;RUN=1;RPP=9.51119;RPPR=3.0103;RPL=176.0;RPR=145.0;EPP=4.53236;EPPR=6.18648;DPRA=0.0;ODDS=290.08;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.993769;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.073;Dels=0.0;FS=2.365;HaplotypeScore=2.9637;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=0.791;QD=22.83;ReadPosRankSum=-0.251;SOR=0.85;ClippingRankSum=-1.556	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.6475:110:66:2561:45:1741:-126.605,0.0,-200.406:45:41:110:65,45:1601,0,2395:1:.:1:.:.:.:-0.000200505	0/1:121.6475:343:68:2578:276:10575:-857.999,0.0,-138.696:275:80:343:68,274:10755,0,1826:.:1:1:.:.:.:-0.0368108
chrX	37513172	.	G	GA	400.494	REJECT	NS=2;DP=300;DPB=354.905;AC=2;AN=3;AF=0.25;RO=203;AO=31;PRO=45.6667;PAO=40.6667;QR=7337;QA=1070;PQR=1585.67;PQA=1431.67;SRF=136;SRR=67;SAF=23;SAR=8;SRP=53.9383;SAP=18.771;AB=0.103333;ABP=413.013;RUN=1;RPP=3.08035;RPPR=56.9334;RPL=16.0;RPR=15.0;EPP=8.68415;EPPR=8.66896;DPRA=0.0;ODDS=6.46598;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=2;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995074;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:107.419:87:61:2173:8:262:-17.8391,-13.4971,-195.506:8:10:79:.:.:1:.:.:.:-0.000200505	0/1:28.0882:213:142:5164:23:808:-31.9569,0.0,-432.185:23:12:188:.:.:1:.:.:.:-0.0368108
chrX	37513172	.	GA	G	256.112	REJECT	NS=2;DP=271;DPB=354.905;AC=2;AN=3;AF=0.375;RO=203;AO=33;PRO=45.6667;PAO=39.6667;QR=7337;QA=1166;PQR=1585.67;PQA=1383.67;SRF=136;SRR=67;SAF=24;SAR=9;SRP=53.9383;SAP=17.8158;AB=0.11;ABP=399.347;RUN=1;RPP=8.34028;RPPR=56.9334;RPL=12.0;RPR=21.0;EPP=4.65535;EPPR=8.66896;DPRA=0.0;ODDS=6.46598;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=2;MEANALT=14.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995074;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=1.8385;FS=5.28;MLEAC=1;MLEAF=0.5;MQ=60.065;MQRankSum=0.7235;QD=0.525;RPA=12,11;RU=A;ReadPosRankSum=0.2365;SOR=1.2935;STR;ClippingRankSum=0.077	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:99.7095:86:61:2173:10:375:-17.8391,0.0,-187.035:11:14:82:73,13:92,0,1545:1:.:1:.:.:.:-0.000200505	./1:63.5441:227:142:5164:23:791:-31.9569,-5.50171,-456.324:27:13:202:185,32:149,0,3818:.:1:1:.:.:.:-0.0368108
chrX	39930433	.	G	GA	128.534	REJECT	NS=2;DP=111;DPB=129.0;AC=2;AN=2;AF=0.0;RO=69;AO=15;PRO=19.1667;PAO=10.1667;QR=2563;QA=446;PQR=675.417;PQA=352.417;SRF=8;SRR=61;SAF=3;SAR=12;SRP=91.4113;SAP=14.7363;AB=0.135135;ABP=131.362;RUN=1;RPP=6.62942;RPPR=50.8771;RPL=10.0;RPR=5.0;EPP=3.15506;EPPR=19.6583;DPRA=0.0;ODDS=1.17068;GTI=1;TYPE=ins;CIGAR=1M1I22M;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.7438:28:16:598:3:86:-6.56938,-4.24074,-55.4921:3:12:25:.:.:1:.:.:.:-0.000200505	./1:1.173:83:53:1965:12:360:-14.6016,-1.97446,-185.484:12:16:76:.:.:1:.:.:.:-0.0368108
chrX	39930433	.	G	GAA	128.534	REJECT	NS=2;DP=111;DPB=129.0;AC=2;AN=2;AF=0.0;RO=69;AO=3;PRO=19.1667;PAO=11.1667;QR=2563;QA=48;PQR=675.417;PQA=368.417;SRF=8;SRR=61;SAF=0;SAR=3;SRP=91.4113;SAP=9.52472;AB=0.027027;ABP=218.69;RUN=1;RPP=9.52472;RPPR=50.8771;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=19.6583;DPRA=0.0;ODDS=1.17068;GTI=1;TYPE=ins;CIGAR=1M2I22M;NUMALT=3;MEANALT=6.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:37.7438:28:16:598:2:32:-6.56938,-8.84319,-60.3762:2:8:25:.:.:1:.:.:.:-0.000200505	./1:1.173:83:53:1965:1:16:-14.6016,-28.7973,-215.007:1:1:76:.:.:1:.:.:.:-0.0368108
chrX	39930433	.	GA	G	128.534	REJECT	NS=2;DP=111;DPB=129.0;AC=2;AN=4;AF=0.5;RO=69;AO=14;PRO=19.1667;PAO=11.5;QR=2563;QA=475;PQR=675.417;PQA=387.75;SRF=8;SRR=61;SAF=0;SAR=14;SRP=91.4113;SAP=33.4109;AB=0.126126;ABP=137.779;RUN=1;RPP=8.59409;RPPR=50.8771;RPL=10.0;RPR=4.0;EPP=8.59409;EPPR=19.6583;DPRA=0.0;ODDS=1.17068;GTI=1;TYPE=del;CIGAR=1M1D21M;NUMALT=3;MEANALT=6.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=0.774;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=1.585;QD=1.48;ReadPosRankSum=-0.7;SOR=0.307;ClippingRankSum=0.258	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:60.3719:26:16:598:4:136:-6.56938,0.0,-50.9701:5:20:25:19,6:83,0,380:1:.:1:.:.:.:-0.000200505	0/1:1.173:83:53:1965:10:339:-14.6016,0.0,-202.646:10:13:76:.:.:.:.:1:.:.:.:-0.0368108
chrX	39933339	.	A	G	8110.51	REJECT	NS=2;DP=324;DPB=373.0;AC=2;AN=4;AF=0.5;RO=105;AO=268;PRO=0.0;PAO=0.0;QR=4001;QA=10225;PQR=0.0;PQA=0.0;SRF=55;SRR=50;SAF=133;SAR=135;SRP=3.52732;SAP=3.04271;AB=0.718499;ABP=157.686;RUN=1;RPP=5.63551;RPPR=3.03098;RPL=125.0;RPR=143.0;EPP=15.9743;EPPR=3.19643;DPRA=0.0;ODDS=271.069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.327;Dels=0.0;FS=1.949;HaplotypeScore=8.8649;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.5845;QD=25.045;ReadPosRankSum=-0.326;SOR=0.879;ClippingRankSum=2.005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:43:1606:54:2068:-159.884,0.0,-118.273:53:56:95:41,53:1924,0,1456:1:.:1:.:.:.:-0.000200505	0/1:129.501:276:62:2395:214:8157:-658.967,0.0,-140.694:214:78:276:62,214:8285,0,1872:.:1:1:.:.:.:-0.0368108
chrX	42030736	.	C	T	14645.55	REJECT	NS=2;DP=382;DPB=439.0;AC=4;AN=4;AF=1.0;RO=0;AO=438;PRO=0.0;PAO=0.0;QR=0;QA=16992;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=247;SAR=191;SRP=0.0;SAP=18.5576;AB=0.0;ABP=0.0;RUN=1;RPP=30.1587;RPPR=0.0;RPL=256.0;RPR=182.0;EPP=10.9426;EPPR=0.0;DPRA=0.0;ODDS=72.37;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.5;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.993151;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.005;SOR=1.0075	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:128.9:109:0:0:109:4255:-382.971,-29.5549,0.0:108:100:108:0,108:4624,325,0:1:.:1:.:.:.:-0.000200505	1/1:128.9:327:0:0:329:12737:-1145.58,-89.1148,0.0:327:100:327:0,326:14127,972,0:.:1:1:.:.:.:-0.0368108
chrX	42030761	.	C	T	13535.55	REJECT	NS=2;DP=358;DPB=409.0;AC=4;AN=4;AF=1.0;RO=0;AO=409;PRO=0.0;PAO=0.0;QR=0;QA=15631;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=189;SAR=220;SRP=0.0;SAP=8.11246;AB=0.0;ABP=0.0;RUN=1;RPP=24.0826;RPPR=0.0;RPL=236.0;RPR=173.0;EPP=21.4917;EPPR=0.0;DPRA=0.0;ODDS=66.7106;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.99511;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=27.65;SOR=0.8655	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.4865:100:0:0:100:3836:-345.28,-27.097,0.0:100:100:100:0,100:4087,300,0:1:.:1:.:.:.:-0.000200505	1/1:125.4865:308:0:0:309:11795:-1060.94,-83.6874,0.0:308:100:308:0,307:13124,915,0:.:1:1:.:.:.:-0.0368108
chrX	44921996	.	G	A	960.249	REJECT	NS=1;DP=78;DPB=78.0;AC=1;AN=4;AF=0.5;RO=42;AO=36;PRO=0.0;PAO=0.0;QR=1625;QA=1372;PQR=0.0;PQA=0.0;SRF=14;SRR=28;SAF=12;SAR=24;SRP=13.1438;SAP=11.6962;AB=0.461538;ABP=4.01252;RUN=1;RPP=11.6962;RPPR=16.2459;RPL=24.0;RPR=12.0;EPP=3.0103;EPPR=3.0103;DPRA=0.0;ODDS=221.106;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=0.865;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.907;QD=15.6;ReadPosRankSum=0.99;SOR=0.682;ClippingRankSum=1.876	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.244:77:42:1625:36:1372:-102.383,0.0,-125.178:35:46:77:41,35:1214,0,1434:1:.:1:.:.:.:-0.000200505	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0368108
chrX	44938563	.	G	A	7759.46	REJECT	NS=2;DP=332;DPB=381.0;AC=2;AN=4;AF=0.5;RO=124;AO=257;PRO=0.0;PAO=0.0;QR=4735;QA=9893;PQR=0.0;PQA=0.0;SRF=52;SRR=72;SAF=94;SAR=163;SRP=10.015;SAP=43.2375;AB=0.674541;ABP=103.827;RUN=1;RPP=3.08634;RPPR=10.015;RPL=130.0;RPR=127.0;EPP=8.29112;EPPR=5.53201;DPRA=0.0;ODDS=244.832;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.992218;PAIREDR=0.991935;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.535;Dels=0.0;FS=4.524;HaplotypeScore=5.9968;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.654;QD=21.305;ReadPosRankSum=1.186;SOR=1.0415;ClippingRankSum=0.836	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:95:58:2236:39:1488:-107.657,0.0,-174.981:38:39:95:57,37:1217,0,1981:1:.:1:.:.:.:-0.000200505	0/1:129.501:284:66:2499:218:8405:-679.092,0.0,-147.848:218:77:284:66,218:8578,0,1926:.:1:1:.:.:.:-0.0368108
chrX	45037023	.	G	A	6468.38	REJECT	NS=2;DP=262;DPB=301.0;AC=2;AN=4;AF=0.5;RO=85;AO=216;PRO=0.0;PAO=0.0;QR=3300;QA=8293;PQR=0.0;PQA=0.0;SRF=50;SRR=35;SAF=147;SAR=69;SRP=8.75832;SAP=64.1734;AB=0.717608;ABP=126.813;RUN=1;RPP=39.2015;RPPR=10.3933;RPL=78.0;RPR=138.0;EPP=20.744;EPPR=30.8307;DPRA=0.0;ODDS=224.865;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9294;PAIRED=0.990741;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=-0.677;Dels=0.0;FS=6.594;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.187;QD=23.94;ReadPosRankSum=1.022;SOR=0.987;ClippingRankSum=-1.522	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:121.5525:76:39:1504:38:1496:-113.823,0.0,-114.537:38:49:76:38,38:1329,0,1358:1:.:1:.:.:.:-0.000200505	0/1:121.5525:224:46:1796:178:6797:-550.766,0.0,-100.892:178:79:224:46,178:6919,0,1350:.:1:1:.:.:.:-0.0368108
chrX	48888074	.	T	C	11833.05	REJECT	NS=2;DP=313;DPB=352.0;AC=4;AN=4;AF=1.0;RO=0;AO=352;PRO=0.0;PAO=0.0;QR=0;QA=13399;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=148;SAR=204;SRP=0.0;SAP=22.3561;AB=0.0;ABP=0.0;RUN=1;RPP=4.21942;RPPR=0.0;RPL=183.0;RPR=169.0;EPP=5.00904;EPPR=0.0;DPRA=0.0;ODDS=51.7396;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.991477;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.97;SOR=1.218	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:126.587:74:0:0:76:2867:-258.159,-20.5952,0.0:74:100:74:0,72:2864,216,0:1:.:1:.:.:.:-0.000200505	1/1:126.587:275:0:0:276:10532:-947.339,-74.7321,0.0:275:100:275:0,274:11703,813,0:.:1:1:.:.:.:-0.201955
chrX	48892468	.	G	GT	461.189	REJECT	NS=2;DP=223;DPB=321.08;AC=2;AN=3;AF=0.25;RO=148;AO=19;PRO=98.1667;PAO=65.1667;QR=5312;QA=682;PQR=3442.5;PQA=2234.5;SRF=40;SRR=108;SAF=8;SAR=11;SRP=70.8541;SAP=4.03889;AB=0.0852018;ABP=336.278;RUN=1;RPP=8.61041;RPPR=3.24505;RPL=13.0;RPR=6.0;EPP=16.8392;EPPR=11.4614;DPRA=0.0;ODDS=30.6329;GTI=0;TYPE=ins;CIGAR=1M1I24M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=59.4737;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:128.281:53:31:1108:2:78:-24.8859,-14.2169,-133.589:2:4:45:.:.:1:.:.:.:0.355962	0/1:160.002:170:117:4204:17:604:-28.7057,0.0,-445.404:17:11:150:.:.:1:.:.:.:-0.201955
chrX	48892468	.	GT	G	461.189	REJECT	NS=2;DP=223;DPB=321.08;AC=2;AN=3;AF=0.25;RO=148;AO=28;PRO=98.1667;PAO=52.6667;QR=5312;QA=898;PQR=3442.5;PQA=1774.0;SRF=40;SRR=108;SAF=9;SAR=19;SRP=70.8541;SAP=10.7656;AB=0.125561;ABP=274.581;RUN=1;RPP=7.97367;RPPR=3.24505;RPL=18.0;RPR=10.0;EPP=3.32051;EPPR=11.4614;DPRA=0.0;ODDS=30.6329;GTI=0;TYPE=del;CIGAR=1M1D23M;NUMALT=2;MEANALT=13.0;LEN=1;MQM=60.3571;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-1.195;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.432;QD=1.74;ReadPosRankSum=1.491;SOR=1.123;ClippingRankSum=-0.188	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:113.6405:59:31:1108:12:383:-24.8859,0.0,-123.996:13:25:55:50,15:173,0,1002:1:.:1:.:.:.:0.355962	./1:160.002:170:117:4204:16:515:-28.7057,-27.8968,-513.363:16:11:150:.:.:.:.:1:.:.:.:-0.201955
chrX	48892694	.	A	G	913.26	REJECT	NS=2;DP=27;DPB=33.0;AC=4;AN=4;AF=1.0;RO=0;AO=33;PRO=0.0;PAO=0.0;QR=0;QA=1196;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=2;SAR=31;SRP=0.0;SAP=58.3499;AB=0.0;ABP=0.0;RUN=1;RPP=3.0761;RPPR=0.0;RPL=17.0;RPR=16.0;EPP=4.65535;EPPR=0.0;DPRA=0.0;ODDS=11.2459;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.909091;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=31.38;SOR=4.123	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:40.92015:11:0:0:11:418:-37.964,-3.00896,0.0:11:100:11:0,11:470,33,0:1:.:1:.:.:.:-2.94449	1/1:70.75015:22:0:0:22:778:-70.3101,-5.97496,0.0:22:100:22:0,22:863,63,0:.:1:1:.:.:.:-0.201955
chrX	48895224	.	G	GA	417.723	REJECT;LowQual	NS=2;DP=157;DPB=256.429;AC=2;AN=3;AF=0.25;RO=53;AO=20;PRO=45.3333;PAO=44.3333;QR=1806;QA=588;PQR=1546.28;PQA=1519.78;SRF=41;SRR=12;SAF=15;SAR=5;SRP=37.4671;SAP=13.8677;AB=0.127389;ABP=192.343;RUN=1;RPP=9.95901;RPPR=24.6841;RPL=6.0;RPR=14.0;EPP=3.44459;EPPR=7.96781;DPRA=0.0;ODDS=15.3061;GTI=0;TYPE=ins;CIGAR=1M1I27M;NUMALT=5;MEANALT=21.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-1.506;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=58.07;MQRankSum=0.624;QD=0.16;RPA=18,19;RU=A;ReadPosRankSum=-1.342;SOR=0.478;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:66.2213:40:16:535:5:146:-9.61651,0.0,-53.6552:5:16:32:.:.:.:.:1:.:.:.:0.00110674	./1:91.402:142:37:1271:15:442:-39.4918,-12.8997,-134.924:20:20:97:90,25:64,0,978:.:1:1:.:.:.:-0.201955
chrX	48895224	.	GA	G	417.723	REJECT	NS=2;DP=157;DPB=256.429;AC=2;AN=3;AF=0.25;RO=53;AO=25;PRO=45.3333;PAO=38.3333;QR=1806;QA=793;PQR=1546.28;PQA=1288.78;SRF=41;SRR=12;SAF=18;SAR=7;SRP=37.4671;SAP=13.5202;AB=0.159236;ABP=161.362;RUN=1;RPP=5.18177;RPPR=24.6841;RPL=10.0;RPR=15.0;EPP=3.09716;EPPR=7.96781;DPRA=0.0;ODDS=15.3061;GTI=0;TYPE=del;CIGAR=1M1D26M;NUMALT=5;MEANALT=21.5;LEN=1;MQM=59.2;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:66.2213:40:16:535:5:99:-9.61651,-8.01736,-67.9583:5:16:32:.:.:1:.:.:.:0.00110674	0/1:118.804:117:37:1271:20:694:-39.4918,0.0,-286.661:20:25:80:.:.:1:.:.:.:-0.201955
chrX	48895224	.	GAA	G	417.723	REJECT	NS=2;DP=157;DPB=256.429;AC=2;AN=2;AF=0.0;RO=53;AO=7;PRO=45.3333;PAO=34.5;QR=1806;QA=208;PQR=1546.28;PQA=1158.78;SRF=41;SRR=12;SAF=5;SAR=2;SRP=37.4671;SAP=5.80219;AB=0.044586;ABP=285.841;RUN=1;RPP=3.32051;RPPR=24.6841;RPL=3.0;RPR=4.0;EPP=10.7656;EPPR=7.96781;DPRA=0.0;ODDS=15.3061;GTI=0;TYPE=del;CIGAR=1M2D25M;NUMALT=5;MEANALT=21.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:66.2213:40:16:535:1:30:-9.61651,-15.0458,-94.1856:1:3:32:.:.:1:.:.:.:0.00110674	./1:118.804:117:37:1271:6:178:-39.4918,-51.4653,-381.86:6:8:80:.:.:1:.:.:.:-0.201955
chrX	48895224	.	GAAA	G	417.723	REJECT	NS=2;DP=157;DPB=256.429;AC=2;AN=2;AF=0.0;RO=53;AO=4;PRO=45.3333;PAO=31.6;QR=1806;QA=95;PQR=1546.28;PQA=1057.33;SRF=41;SRR=12;SAF=3;SAR=1;SRP=37.4671;SAP=5.18177;AB=0.0254777;ABP=310.073;RUN=1;RPP=3.0103;RPPR=24.6841;RPL=2.0;RPR=2.0;EPP=5.18177;EPPR=7.96781;DPRA=0.0;ODDS=15.3061;GTI=0;TYPE=del;CIGAR=1M3D24M;NUMALT=5;MEANALT=21.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:66.2213:40:16:535:3:60:-9.61651,-13.9696,-105.555:3:9:32:.:.:1:.:.:.:0.00110674	./1:118.804:117:37:1271:1:35:-39.4918,-74.1586,-487.495:1:1:80:.:.:1:.:.:.:-0.201955
chrX	48895250	.	A	C	417.723	REJECT	NS=2;DP=157;DPB=256.429;AC=2;AN=2;AF=0.0;RO=53;AO=3;PRO=45.3333;PAO=15.9;QR=1806;QA=48;PQR=1546.28;PQA=516.033;SRF=41;SRR=12;SAF=3;SAR=0;SRP=37.4671;SAP=9.52472;AB=0.0191083;ABP=318.372;RUN=1;RPP=9.52472;RPPR=24.6841;RPL=3.0;RPR=0.0;EPP=9.52472;EPPR=7.96781;DPRA=0.0;ODDS=15.3061;GTI=0;TYPE=snp;CIGAR=26M1X1M;NUMALT=5;MEANALT=21.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:66.2213:40:16:535:2:32:-9.61651,-53.3548,-526.328:2:6:32:.:.:1:.:.:.:0.00110674	./1:118.804:117:37:1271:1:16:-39.4918,-185.13,-1752.61:1:1:80:.:.:1:.:.:.:-0.201955
chrX	48898183	.	C	G	17127.1	REJECT	NS=2;DP=465;DPB=536.0;AC=4;AN=4;AF=1.0;RO=0;AO=536;PRO=0.0;PAO=0.0;QR=0;QA=19997;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=259;SAR=277;SRP=0.0;SAP=4.32291;AB=0.0;ABP=0.0;RUN=1;RPP=4.32291;RPPR=0.0;RPL=259.0;RPR=277.0;EPP=3.59368;EPPR=0.0;DPRA=0.0;ODDS=94.0069;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.996269;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.01;FS=0.0;HaplotypeScore=17.2645;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.865;SOR=0.7915	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:142:0:0:144:5354:-481.727,-38.9516,0.0:142:100:142:0,141:5681,422,0:1:.:1:.:.:.:0.00110674	1/1:129.501:392:0:0:392:14643:-1316.92,-106.035,0.0:392:100:392:0,392:16343,1150,0:.:1:1:.:.:.:-0.201955
chrX	48898463	.	C	CT	232.198	REJECT	NS=2;DP=231;DPB=313.667;AC=2;AN=3;AF=0.25;RO=108;AO=23;PRO=43.4;PAO=32.0667;QR=3780;QA=509;PQR=1534.75;PQA=1126.75;SRF=31;SRR=77;SAF=6;SAR=17;SRP=45.5551;SAP=14.4341;AB=0.0995671;ABP=324.736;RUN=1;RPP=14.4341;RPPR=12.7417;RPL=17.0;RPR=6.0;EPP=3.86001;EPPR=14.5915;DPRA=0.0;ODDS=10.6108;GTI=0;TYPE=ins;CIGAR=1M1I20M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=58.7826;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:102.503:54:19:654:9:247:-23.0335,0.0,-59.6571:9:22:41:.:.:1:.:.:.:0.00110674	./1:46.0824:177:89:3126:14:262:-9.45031,-13.4273,-296.955:14:10:139:.:.:1:.:.:.:-0.201955
chrX	48898463	.	C	CTT	232.198	REJECT	NS=2;DP=231;DPB=313.667;AC=2;AN=2;AF=0.0;RO=108;AO=10;PRO=43.4;PAO=31.0667;QR=3780;QA=267;PQR=1534.75;PQA=1086.75;SRF=31;SRR=77;SAF=3;SAR=7;SRP=45.5551;SAP=6.48466;AB=0.04329;ABP=421.522;RUN=1;RPP=6.48466;RPPR=12.7417;RPL=7.0;RPR=3.0;EPP=3.87889;EPPR=14.5915;DPRA=0.0;ODDS=10.6108;GTI=0;TYPE=ins;CIGAR=1M2I20M;NUMALT=4;MEANALT=19.5;LEN=2;MQM=53.4;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:102.503:54:19:654:4:108:-23.0335,-11.1685,-71.7946:4:10:41:.:.:1:.:.:.:0.00110674	./1:46.0824:177:89:3126:6:159:-9.45031,-23.8689,-308.982:6:4:139:.:.:1:.:.:.:-0.201955
chrX	48898463	.	CT	C	232.198	REJECT	NS=2;DP=231;DPB=313.667;AC=2;AN=3;AF=0.25;RO=108;AO=30;PRO=43.4;PAO=28.4;QR=3780;QA=783;PQR=1534.75;PQA=991.75;SRF=31;SRR=77;SAF=5;SAR=25;SRP=45.5551;SAP=31.9633;AB=0.12987;ABP=277.885;RUN=1;RPP=13.4334;RPPR=12.7417;RPL=21.0;RPR=9.0;EPP=5.61607;EPPR=14.5915;DPRA=0.0;ODDS=10.6108;GTI=0;TYPE=del;CIGAR=1M1D19M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=59.1333;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:102.503:54:19:654:6:140:-23.0335,-16.3292,-120.638:6:15:41:.:.:1:.:.:.:0.00110674	0/1:46.0824:177:89:3126:24:643:-9.45031,0.0,-477.947:24:17:139:.:.:1:.:.:.:-0.201955
chrX	48898479	.	G	T	232.198	REJECT	NS=2;DP=231;DPB=313.667;AC=2;AN=2;AF=0.0;RO=108;AO=9;PRO=43.4;PAO=24.0667;QR=3780;QA=146;PQR=1534.75;PQA=774.0;SRF=31;SRR=77;SAF=9;SAR=0;SRP=45.5551;SAP=22.5536;AB=0.038961;ABP=429.493;RUN=1;RPP=9.04217;RPPR=12.7417;RPL=7.0;RPR=2.0;EPP=9.04217;EPPR=14.5915;DPRA=0.0;ODDS=10.6108;GTI=0;TYPE=snp;CIGAR=16M1X4M;NUMALT=4;MEANALT=19.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:102.503:54:19:654:3:62:-23.0335,-21.5442,-153.042:3:7:41:.:.:1:.:.:.:0.00110674	./1:46.0824:177:89:3126:6:84:-9.45031,-63.2946,-695.246:6:4:139:.:.:1:.:.:.:-0.201955
chrX	48898809	.	TAC	T	246.314	REJECT	NS=2;DP=281;DPB=333.947;AC=2;AN=4;AF=0.5;RO=234;AO=32;PRO=63.0;PAO=54.0;QR=8854;QA=1176;PQR=2270.0;PQA=1927.0;SRF=173;SRR=61;SAF=24;SAR=8;SRP=119.416;SAP=20.3821;AB=0.113879;ABP=366.898;RUN=1;RPP=3.28173;RPPR=38.6818;RPL=15.0;RPR=17.0;EPP=3.28173;EPPR=8.35546;DPRA=0.0;ODDS=15.5097;GTI=0;TYPE=del;CIGAR=1M2D16M;NUMALT=1;MEANALT=6.0;LEN=2;MQM=61.25;MQMR=60.0;PAIRED=1.0;PAIREDR=0.995726;technology.ILLUMINA=1.0;BaseQRankSum=-0.632;FS=7.065;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.684;QD=1.44;ReadPosRankSum=-1.601;SOR=0.094;ClippingRankSum=-0.442	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:83.179:67:55:2093:8:277:-7.31706,0.0,-177.652:9:14:65:58,10:144,0,1909:1:.:1:.:.:.:0.00110674	0/1:135.545:214:179:6761:24:899:-23.987,0.0,-575.366:24:12:203:.:.:.:.:1:.:.:.:-0.201955
chrX	53228148	.	C	A	13115.849999999999	REJECT	NS=2;DP=354;DPB=405.0;AC=4;AN=4;AF=1.0;RO=1;AO=404;PRO=0.0;PAO=0.0;QR=16;QA=15180;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=213;SAR=191;SRP=5.18177;SAP=5.61177;AB=0.0;ABP=0.0;RUN=1;RPP=3.0963;RPPR=5.18177;RPL=200.0;RPR=204.0;EPP=3.2038;EPPR=5.18177;DPRA=0.0;ODDS=66.6391;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990099;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.641;Dels=0.0;FS=0.0;HaplotypeScore=3.8993;MLEAC=2;MLEAF=1.0;MQ=60.0;MQRankSum=0.08;QD=31.235;ReadPosRankSum=1.721;SOR=0.5025	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:125.0355:98:0:0:100:3741:-336.71,-27.0659,0.0:98:100:98:0,97:4064,290,0:1:.:1:.:.:.:0.00110674	1/1:125.0355:304:1:16:304:11439:-1027.37,-81.0707,0.0:303:100:304:1,303:12655,879,0:.:1:1:.:.:.:-0.0734337
chrX	53449568	.	G	A	5191.26	REJECT	NS=2;DP=207;DPB=235.0;AC=2;AN=4;AF=0.5;RO=61;AO=174;PRO=0.0;PAO=0.0;QR=2302;QA=6677;PQR=0.0;PQA=0.0;SRF=28;SRR=33;SAF=60;SAR=114;SRP=3.90025;SAP=39.4012;AB=0.740426;ABP=121.0;RUN=1;RPP=75.0932;RPPR=37.2199;RPL=125.0;RPR=49.0;EPP=12.7944;EPPR=18.709;DPRA=0.0;ODDS=142.215;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.62;Dels=0.0;FS=5.6635;HaplotypeScore=2.9133;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.84;QD=24.035;ReadPosRankSum=1.168;SOR=1.168;ClippingRankSum=-0.588	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.96:55:27:1029:29:1070:-81.1987,0.0,-77.9176:28:51:55:27,27:916,0,913:1:.:1:.:.:.:0.00110674	0/1:118.96:179:34:1273:145:5607:-455.952,0.0,-66.4252:145:81:179:34,145:5743,0,886:.:1:1:.:.:.:-0.0734337
chrX	66676395	.	C	T	1323.53	REJECT	NS=1;DP=88;DPB=88.0;AC=1;AN=4;AF=0.5;RO=38;AO=50;PRO=0.0;PAO=0.0;QR=1405;QA=1801;PQR=0.0;PQA=0.0;SRF=16;SRR=22;SAF=24;SAR=26;SRP=5.06748;SAP=3.18402;AB=0.568182;ABP=6.56362;RUN=1;RPP=14.1282;RPPR=3.23888;RPL=33.0;RPR=17.0;EPP=3.0103;EPPR=3.23888;DPRA=0.0;ODDS=225.109;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=0.973684;technology.ILLUMINA=1.0;BaseQRankSum=-0.234;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.252;QD=18.68;ReadPosRankSum=2.108;SOR=0.481;ClippingRankSum=0.991	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.6565:86:38:1405:50:1801:-138.327,0.0,-102.682:48:56:86:37,47:1597,0,1262:1:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0276865
chrX	66765158	.	T	A	1028.52	REJECT	SOMATIC;NS=2;DP=68;DPB=232.549;AC=1;AN=3;AF=0.0;RO=1;AO=11;PRO=84.1167;PAO=27.3667;QR=39;QA=396;PQR=3097.87;PQA=998.7;SRF=0;SRR=1;SAF=4;SAR=7;SRP=5.18177;SAP=4.78696;AB=0.161765;ABP=70.5814;RUN=1;RPP=26.8965;RPPR=5.18177;RPL=0.0;RPR=11.0;EPP=4.78696;EPPR=5.18177;DPRA=0.0;ODDS=1.39504;GTI=0;TYPE=snp;CIGAR=1X70M;NUMALT=5;MEANALT=8.5;LEN=1;MQM=58.2727;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:111.619:20:0:0:5:186:-29.7666,-82.0035,-834.366:5:28:18:.:.:.:.:.:.:-0.00244028	./1:7.02011:48:1:39:6:210:-80.2198,-213.375,-1892.47:6:15:41:.:.:1:.:.:.:-0.0276865
chrX	66765158	.	T	TGCAGCA	1028.52	REJECT	NS=2;DP=68;DPB=232.549;AC=2;AN=2;AF=0.25;RO=1;AO=5;PRO=84.1167;PAO=84.1167;QR=39;QA=192;PQR=3097.87;PQA=3097.87;SRF=0;SRR=1;SAF=0;SAR=5;SRP=5.18177;SAP=13.8677;AB=0.0735294;ABP=110.434;RUN=1;RPP=6.91895;RPPR=5.18177;RPL=1.0;RPR=4.0;EPP=6.91895;EPPR=5.18177;DPRA=0.0;ODDS=1.39504;GTI=0;TYPE=ins;CIGAR=1M6I70M;NUMALT=5;MEANALT=8.5;LEN=6;MQM=59.6;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.999;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=2.227;QD=8.54;ReadPosRankSum=1.884;SOR=0.208;ClippingRankSum=-0.286	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:105.3095:21:0:0:4:153:-29.7666,-17.0804,-15.996:6:28:20:2,8:780,492,496:1:.:1:.:.:.:-0.00244028	./1:7.02011:48:1:39:1:39:-80.2198,-77.2554,-80.2216:1:2:41:.:.:.:.:1:.:.:.:-0.0276865
chrX	66765158	.	TGCAGCA	T	1028.52	REJECT	NS=2;DP=68;DPB=232.549;AC=2;AN=3;AF=0.5;RO=1;AO=35;PRO=84.1167;PAO=75.7833;QR=39;QA=1284;PQR=3097.87;PQA=2790.87;SRF=0;SRR=1;SAF=16;SAR=19;SRP=5.18177;SAP=3.56868;AB=0.514706;ABP=3.13803;RUN=1;RPP=8.03571;RPPR=5.18177;RPL=22.0;RPR=13.0;EPP=4.56135;EPPR=5.18177;DPRA=0.0;ODDS=1.39504;GTI=0;TYPE=del;CIGAR=1M6D64M;NUMALT=5;MEANALT=8.5;LEN=6;MQM=61.7143;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=1.999;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=2.227;QD=8.54;ReadPosRankSum=1.884;SOR=0.208;ClippingRankSum=-0.286	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:105.3095:21:0:0:6:225:-29.7666,-12.6863,-63.202:9:45:20:2,13:780,271,585:1:.:1:.:.:.:-0.00244028	0/1:7.02011:48:1:39:29:1059:-80.2198,0.0,-70.3088:29:71:41:.:.:.:.:1:.:.:.:-0.0276865
chrX	66765158	.	TGCAGCAGCA	T	1028.52	REJECT	SOMATIC;NS=2;DP=68;DPB=232.549;AC=1;AN=3;AF=0.0;RO=1;AO=5;PRO=84.1167;PAO=68.5833;QR=39;QA=155;PQR=3097.87;PQA=2515.0;SRF=0;SRR=1;SAF=0;SAR=5;SRP=5.18177;SAP=13.8677;AB=0.0735294;ABP=110.434;RUN=1;RPP=3.44459;RPPR=5.18177;RPL=3.0;RPR=2.0;EPP=3.44459;EPPR=5.18177;DPRA=0.0;ODDS=1.39504;GTI=0;TYPE=del;CIGAR=1M9D61M;NUMALT=5;MEANALT=8.5;LEN=9;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:111.619:20:0:0:1:34:-29.7666,-40.5241,-193.526:1:6:18:.:.:.:.:.:.:-0.00244028	./1:7.02011:48:1:39:4:121:-80.2198,-89.2767,-302.69:4:10:41:.:.:1:.:.:.:-0.0276865
chrX	66765161	.	AGCA	TGCT	1028.52	REJECT	SOMATIC;NS=2;DP=68;DPB=232.549;AC=1;AN=3;AF=0.0;RO=1;AO=2;PRO=84.1167;PAO=29.0333;QR=39;QA=74;PQR=3097.87;PQA=1050.7;SRF=0;SRR=1;SAF=2;SAR=0;SRP=5.18177;SAP=7.35324;AB=0.1;ABP=30.8051;RUN=1;RPP=7.35324;RPPR=5.18177;RPL=0.0;RPR=2.0;EPP=7.35324;EPPR=5.18177;DPRA=0.0;ODDS=1.39504;GTI=0;TYPE=complex;CIGAR=3M1X2M1X64M;NUMALT=5;MEANALT=7.0;LEN=71;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/0:111.619:20:0:0:2:74:-29.7666,-85.9327,-779.278:2:11:18:.:.:.:.:.:.:-0.00244028	./1:7.02011:48:1:39:0:0:-80.2198,-218.824,-1787.47:0:0:41:.:.:1:.:.:.:-0.0276865
chrX	66766356	.	T	TGGC	1890.32	REJECT	NS=2;DP=116;DPB=231.13;AC=2;AN=2;AF=0.375;RO=4;AO=14;PRO=86.0833;PAO=86.0833;QR=151;QA=461;PQR=3117.25;PQA=3117.25;SRF=2;SRR=2;SAF=8;SAR=6;SRP=3.0103;SAP=3.63072;AB=0.12069;ABP=147.975;RUN=1;RPP=12.937;RPPR=5.18177;RPL=11.0;RPR=3.0;EPP=5.49198;EPPR=5.18177;DPRA=0.0;ODDS=1.87233;GTI=1;TYPE=ins;CIGAR=1M3I53M;NUMALT=3;MEANALT=10.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.024;FS=1.55;MLEAC=1;MLEAF=0.5;MQ=60.235;MQRankSum=0.178;QD=13.35;RPA=17;RU=GGC;ReadPosRankSum=-0.214;SOR=1.625;STR;ClippingRankSum=1.005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.810587:30:2:78:3:76:-23.281,-17.7917,-23.4731:6:20:27:2,9:1015,725,776:1:.:1:.:.:.:-0.00244028	./1:114.297:151:2:73:11:385:-175.302,-144.188,-147.25:13:15:82:2,15:9191,8775,10455:.:1:1:.:.:.:-0.0276865
chrX	66766356	.	TGGCGGCGGCGGC	T	1890.32	REJECT	NS=2;DP=116;DPB=231.13;AC=2;AN=2;AF=0.5;RO=4;AO=74;PRO=86.0833;PAO=76.5833;QR=151;QA=2271;PQR=3117.25;PQA=2760.75;SRF=2;SRR=2;SAF=50;SAR=24;SRP=3.0103;SAP=22.847;AB=0.637931;ABP=22.1792;RUN=1;RPP=3.47981;RPPR=5.18177;RPL=39.0;RPR=35.0;EPP=3.47981;EPPR=5.18177;DPRA=0.0;ODDS=1.87233;GTI=1;TYPE=del;CIGAR=1M12D41M;NUMALT=3;MEANALT=10.5;LEN=12;MQM=60.9459;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=0.024;FS=1.55;MLEAC=1;MLEAF=0.5;MQ=60.235;MQRankSum=0.178;QD=13.35;RPA=17;RU=GGC;ReadPosRankSum=-0.214;SOR=1.625;STR;ClippingRankSum=1.005	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:49.810587:30:2:78:14:385:-23.281,0.0,-83.396:17:63:27:2,21:1015,235,809:1:.:1:.:.:.:-0.00244028	./1:114.297:151:2:73:60:1886:-175.302,-25.6301,-52.9599:65:80:82:2,71:9191,558,3093:.:1:1:.:.:.:-0.0276865
chrX	66766356	.	TGGCGGCGGCGGCGGC	T	1890.32	REJECT	NS=2;DP=116;DPB=231.13;AC=1;AN=3;AF=0.0;RO=4;AO=7;PRO=86.0833;PAO=66.25;QR=151;QA=199;PQR=3117.25;PQA=2373.75;SRF=2;SRR=2;SAF=4;SAR=3;SRP=3.0103;SAP=3.32051;AB=0.0603448;ABP=197.769;RUN=1;RPP=3.32051;RPPR=5.18177;RPL=3.0;RPR=4.0;EPP=10.7656;EPPR=5.18177;DPRA=0.0;ODDS=1.87233;GTI=1;TYPE=del;CIGAR=1M15D38M;NUMALT=3;MEANALT=10.5;LEN=15;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:0.621174:28:2:78:4:100:-23.281,-27.832,-170.582:4:17:23:.:.:1:.:.:.:-0.00244028	0/0:129.594:88:2:73:3:99:-175.302,-191.32,-465.445:3:4:76:.:.:.:.:.:.:-0.0276865
chrX	69001530	.	G	T	8134.6	REJECT	NS=2;DP=338;DPB=390.0;AC=2;AN=4;AF=0.5;RO=124;AO=266;PRO=0.0;PAO=0.0;QR=4776;QA=10294;PQR=0.0;PQA=0.0;SRF=57;SRR=67;SAF=121;SAR=145;SRP=4.76149;SAP=7.71244;AB=0.682051;ABP=115.281;RUN=1;RPP=5.10014;RPPR=3.0103;RPL=141.0;RPR=125.0;EPP=3.04295;EPPR=6.44263;DPRA=0.0;ODDS=310.925;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.439;Dels=0.0;FS=2.717;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3755;QD=22.8;ReadPosRankSum=0.1225;SOR=0.864;ClippingRankSum=1.592	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:118.7625:102:55:2103:48:1820:-135.916,0.0,-161.379:47:46:102:55,46:1605,0,1969:1:.:1:.:.:.:-0.00244028	0/1:118.7625:287:69:2673:218:8474:-684.458,0.0,-162.673:218:76:287:69,218:8635,0,2125:.:1:1:.:.:.:-0.0276865
chrX	70341169	.	A	C	7131.5	REJECT	NS=2;DP=290;DPB=329.0;AC=2;AN=4;AF=0.5;RO=87;AO=242;PRO=0.0;PAO=0.0;QR=3303;QA=9118;PQR=0.0;PQA=0.0;SRF=54;SRR=33;SAF=151;SAR=91;SRP=14.0174;SAP=35.3132;AB=0.735562;ABP=161.581;RUN=1;RPP=85.7057;RPPR=6.03039;RPL=73.0;RPR=169.0;EPP=4.76901;EPPR=3.03526;DPRA=0.0;ODDS=222.293;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.2479;MQMR=60.0;PAIRED=0.991736;PAIREDR=0.988506;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.3925;Dels=0.0;FS=0.0;HaplotypeScore=4.9644;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.2745;QD=24.13;ReadPosRankSum=1.0645;SOR=0.6635;ClippingRankSum=-0.362	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:77:38:1455:40:1495:-113.463,0.0,-109.886:39:51:77:38,39:1401,0,1405:1:.:1:.:.:.:-0.00244028	0/1:129.501:251:49:1848:202:7623:-617.75,0.0,-98.3418:202:80:251:49,202:7667,0,1321:.:1:1:.:.:.:-0.0276865
chrX	70347330	.	G	A	2017.44	REJECT	NS=2;DP=266;DPB=295.0;AC=2;AN=4;AF=0.5;RO=201;AO=94;PRO=0.0;PAO=0.0;QR=7547;QA=3585;PQR=0.0;PQA=0.0;SRF=68;SRR=133;SAF=32;SAR=62;SRP=48.6544;SAP=23.801;AB=0.318644;ABP=87.2855;RUN=1;RPP=23.801;RPPR=57.47;RPL=62.0;RPR=32.0;EPP=7.53805;EPPR=6.13247;DPRA=0.0;ODDS=132.732;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=59.9801;PAIRED=0.989362;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.186;Dels=0.0;FS=0.2975;HaplotypeScore=7.7901;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0.089;QD=15.225;ReadPosRankSum=-0.038;SOR=0.631;ClippingRankSum=1.1	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:123.2525:58:21:821:37:1411:-111.38,0.0,-58.2212:37:64:58:21,37:1376,0,706:1:.:1:.:.:.:-0.00244028	0/1:123.2525:237:180:6726:57:2174:-131.425,0.0,-540.884:57:24:237:180,57:1737,0,6751:.:1:1:.:.:.:-0.0276865
chrX	70349947	.	A	C	9510.16	REJECT	NS=2;DP=402;DPB=457.0;AC=2;AN=4;AF=0.5;RO=146;AO=311;PRO=0.0;PAO=0.0;QR=5562;QA=12045;PQR=0.0;PQA=0.0;SRF=59;SRR=87;SAF=140;SAR=171;SRP=14.6708;SAP=9.72022;AB=0.680525;ABP=132.372;RUN=1;RPP=17.1493;RPPR=3.06979;RPL=178.0;RPR=133.0;EPP=5.53088;EPPR=11.5772;DPRA=0.0;ODDS=332.397;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.990354;PAIREDR=0.993151;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=1.7585;Dels=0.0;FS=1.2935;HaplotypeScore=4.893;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.3495;QD=22.71;ReadPosRankSum=0.469;SOR=0.5455;ClippingRankSum=-0.301	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:120.063:105:57:2214:50:1939:-145.516,0.0,-170.267:48:46:105:56,47:1695,0,1960:1:.:1:.:.:.:-0.00244028	0/1:120.063:348:89:3348:261:10106:-814.171,0.0,-206.321:259:74:348:89,258:10203,0,2659:.:1:1:.:.:.:-0.0276865
chrX	70361967	.	G	A	9732.51	REJECT	NS=2;DP=259;DPB=295.0;AC=4;AN=4;AF=1.0;RO=0;AO=295;PRO=0.0;PAO=0.0;QR=0;QA=11217;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=167;SAR=128;SRP=0.0;SAP=14.2063;AB=0.0;ABP=0.0;RUN=1;RPP=114.374;RPPR=0.0;RPL=86.0;RPR=209.0;EPP=10.0841;EPPR=0.0;DPRA=0.0;ODDS=48.5976;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.635;SOR=0.946	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.8715:70:0:0:71:2650:-238.631,-19.2306,0.0:70:100:70:0,70:2845,209,0:1:.:1:.:.:.:-0.00244028	1/1:123.8715:224:0:0:224:8567:-770.662,-60.6713,0.0:224:100:224:0,224:9573,665,0:.:1:1:.:.:.:-0.0276865
chrX	76937963	.	G	C	2422.425	REJECT	NS=2;DP=352;DPB=402.0;AC=2;AN=4;AF=0.5;RO=283;AO=119;PRO=0.0;PAO=0.0;QR=10730;QA=4485;PQR=0.0;PQA=0.0;SRF=151;SRR=132;SAF=68;SAR=51;SRP=5.78027;SAP=8.28388;AB=0.29602;ABP=148.294;RUN=1;RPP=3.90444;RPPR=3.38628;RPL=63.0;RPR=56.0;EPP=3.46649;EPPR=11.3662;DPRA=0.0;ODDS=324.108;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.983193;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.4565;Dels=0.0;FS=2.442;HaplotypeScore=7.7812;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.0835;QD=11.195;ReadPosRankSum=0.028;SOR=0.9535;ClippingRankSum=-0.326	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:97:50:1908:49:1875:-141.93,0.0,-144.931:47:48:97:50,46:1570,0,1825:1:.:1:.:.:.:-0.00244028	0/1:129.501:302:233:8822:70:2610:-152.749,0.0,-711.472:69:23:302:233,69:1990,0,8907:.:1:1:.:.:.:-0.0276865
chrX	100615023	.	T	G	530.784	REJECT	NS=1;DP=54;DPB=54.0;AC=1;AN=4;AF=0.5;RO=32;AO=22;PRO=0.0;PAO=0.0;QR=1243;QA=846;PQR=0.0;PQA=0.0;SRF=17;SRR=15;SAF=14;SAR=8;SRP=3.28173;SAP=6.56362;AB=0.407407;ABP=7.03155;RUN=1;RPP=34.9902;RPPR=42.0968;RPL=2.0;RPR=20.0;EPP=6.56362;EPPR=3.28173;DPRA=0.0;ODDS=122.218;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.954545;PAIREDR=1.0;technology.ILLUMINA=1.0;BaseQRankSum=-0.695;FS=2.418;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-0.546;QD=12.16;ReadPosRankSum=0.454;SOR=1.151;ClippingRankSum=0.954	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:126.4765:53:32:1243:22:846:-61.5731,0.0,-97.3386:22:41:53:30,22:685,0,1108:1:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0276865
chrX	118514315	.	G	A	8734.84	REJECT	NS=2;DP=383;DPB=432.0;AC=2;AN=4;AF=0.5;RO=142;AO=290;PRO=0.0;PAO=0.0;QR=5458;QA=11149;PQR=0.0;PQA=0.0;SRF=55;SRR=87;SAF=117;SAR=173;SRP=18.6694;SAP=26.4922;AB=0.671296;ABP=113.112;RUN=1;RPP=37.6341;RPPR=6.92507;RPL=179.0;RPR=111.0;EPP=5.43636;EPPR=3.56081;DPRA=0.0;ODDS=274.051;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.996552;PAIREDR=1.0;technology.ILLUMINA=1.0;MQ0=0;BaseQRankSum=0.8085;Dels=0.0;FS=3.868;HaplotypeScore=3.8798;MLEAC=1;MLEAF=0.5;MQ=60.0;MQRankSum=-1.166;QD=21.695;ReadPosRankSum=1.6655;SOR=0.6175;ClippingRankSum=-0.458	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:129.501:94:52:2010:44:1628:-120.525,0.0,-154.945:43:46:94:50,43:1398,0,1799:1:.:1:.:.:.:-0.00244028	0/1:129.501:335:90:3448:246:9521:-765.328,0.0,-219.099:245:73:335:90,245:9630,0,2836:.:1:1:.:.:.:-0.0276865
chrX	129147079	.	T	C	11646.15	REJECT	NS=2;DP=303;DPB=343.0;AC=4;AN=4;AF=1.0;RO=0;AO=343;PRO=0.0;PAO=0.0;QR=0;QA=13245;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=203;SAR=140;SRP=0.0;SAP=28.1373;AB=0.0;ABP=0.0;RUN=1;RPP=3.16857;RPPR=0.0;RPL=174.0;RPR=169.0;EPP=4.08021;EPPR=0.0;DPRA=0.0;ODDS=53.6287;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=60.0;MQMR=0.0;PAIRED=0.997085;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;Dels=0.0;FS=0.0;HaplotypeScore=3.9652;MLEAC=2;MLEAF=1.0;MQ=60.0;QD=28.765;SOR=1.176	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:77:0:0:79:3033:-273.088,-21.4156,0.0:77:100:77:0,76:3142,228,0:1:.:1:.:.:.:-0.00244028	1/1:129.501:264:0:0:264:10212:-918.606,-71.5366,0.0:264:100:264:0,264:11471,795,0:.:1:1:.:.:.:-0.0276865
chrX	132838305	.	G	GA	134.813	REJECT	NS=1;DP=62;DPB=77.5417;AC=1;AN=3;AF=0.0;RO=34;AO=6;PRO=14.6667;PAO=8.66667;QR=1247;QA=154;PQR=520.333;PQA=304.333;SRF=4;SRR=30;SAF=1;SAR=5;SRP=46.1843;SAP=8.80089;AB=0.0967742;ABP=90.5697;RUN=1;RPP=4.45795;RPPR=4.03217;RPL=4.0;RPR=2.0;EPP=3.0103;EPPR=4.03217;DPRA=0.0;ODDS=31.0418;GTI=0;TYPE=ins;CIGAR=1M1I23M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:133.026:62:34:1247:6:154:-18.6763,-17.2776,-136.591:6:11:53:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	132838305	.	GA	G	134.813	REJECT	NS=1;DP=62;DPB=77.5417;AC=1;AN=4;AF=0.5;RO=34;AO=13;PRO=14.6667;PAO=6.66667;QR=1247;QA=390;PQR=520.333;PQA=221.333;SRF=4;SRR=30;SAF=4;SAR=9;SRP=46.1843;SAP=7.18621;AB=0.209677;ABP=48.4011;RUN=1;RPP=3.17734;RPPR=4.03217;RPL=7.0;RPR=6.0;EPP=11.1951;EPPR=4.03217;DPRA=0.0;ODDS=31.0418;GTI=0;TYPE=del;CIGAR=1M1D22M;NUMALT=2;MEANALT=7.0;LEN=1;MQM=60.7692;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;BaseQRankSum=-0.423;FS=3.375;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.836;QD=1.56;ReadPosRankSum=-0.939;SOR=0.264;ClippingRankSum=-0.464	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:116.013:63:34:1247:13:390:-18.6763,0.0,-149.579:13:23:59:51,14:164,0,1000:1:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:.:.:-0.0276865
chrX	132888207	.	T	A	208.351	REJECT	NS=2;DP=112;DPB=143.419;AC=2;AN=2;AF=0.0;RO=46;AO=3;PRO=28.7167;PAO=0.0;QR=1732;QA=44;PQR=989.467;PQA=0.0;SRF=0;SRR=46;SAF=0;SAR=3;SRP=102.898;SAP=9.52472;AB=0.0267857;ABP=220.856;RUN=1;RPP=3.73412;RPPR=4.70971;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=4.70971;DPRA=0.0;ODDS=9.3745;GTI=0;TYPE=snp;CIGAR=1X30M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7133:29:8:304:2:30:-14.2323,-36.7649,-297.546:2:7:27:.:.:1:.:.:.:-0.00244028	./1:81.9509:83:38:1428:1:14:-16.4946,-75.3902,-712.114:1:1:69:.:.:1:.:.:.:-0.0276865
chrX	132888207	.	T	TA	208.351	REJECT	NS=2;DP=112;DPB=143.419;AC=2;AN=3;AF=0.25;RO=46;AO=18;PRO=28.7167;PAO=15.7167;QR=1732;QA=428;PQR=989.467;PQA=533.467;SRF=0;SRR=46;SAF=0;SAR=18;SRP=102.898;SAP=42.0968;AB=0.160714;ABP=114.996;RUN=1;RPP=3.49285;RPPR=4.70971;RPL=10.0;RPR=8.0;EPP=3.49285;EPPR=4.70971;DPRA=0.0;ODDS=9.3745;GTI=0;TYPE=ins;CIGAR=1M1I30M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.944444;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:40.7133:29:8:304:6:150:-14.2323,0.0,-25.7998:6:22:27:.:.:1:.:.:.:-0.00244028	./1:81.9509:83:38:1428:12:278:-16.4946,-8.81267,-163.484:12:17:69:.:.:1:.:.:.:-0.0276865
chrX	132888207	.	TA	T	208.351	REJECT	NS=2;DP=112;DPB=143.419;AC=2;AN=3;AF=0.25;RO=46;AO=20;PRO=28.7167;PAO=15.7167;QR=1732;QA=439;PQR=989.467;PQA=507.967;SRF=0;SRR=46;SAF=1;SAR=19;SRP=102.898;SAP=38.1882;AB=0.178571;ABP=103.518;RUN=1;RPP=3.44459;RPPR=4.70971;RPL=11.0;RPR=9.0;EPP=4.74748;EPPR=4.70971;DPRA=0.0;ODDS=9.3745;GTI=0;TYPE=del;CIGAR=1M1D29M;NUMALT=5;MEANALT=12.5;LEN=1;MQM=60.0;MQMR=60.0;PAIRED=0.95;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC;MQ0=0;BaseQRankSum=-0.03;FS=0.0;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=0.814;QD=1.43;RPA=16,15;RU=A;ReadPosRankSum=-0.254;SOR=0.593;STR	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7133:29:8:304:6:114:-14.2323,-5.22677,-31.3109:6:22:27:.:.:.:.:1:.:.:.:-0.00244028	0/1:90.47545:115:38:1428:14:325:-16.4946,0.0,-187.807:22:24:90:81,31:249,0,1195:.:1:1:.:.:.:-0.0276865
chrX	132888207	.	TAA	T	208.351	REJECT	NS=2;DP=112;DPB=143.419;AC=2;AN=2;AF=0.0;RO=46;AO=6;PRO=28.7167;PAO=11.05;QR=1732;QA=114;PQR=989.467;PQA=364.3;SRF=0;SRR=46;SAF=1;SAR=5;SRP=102.898;SAP=8.80089;AB=0.0535714;ABP=196.892;RUN=1;RPP=3.0103;RPPR=4.70971;RPL=3.0;RPR=3.0;EPP=4.45795;EPPR=4.70971;DPRA=0.0;ODDS=9.3745;GTI=0;TYPE=del;CIGAR=1M2D28M;NUMALT=5;MEANALT=12.5;LEN=2;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7133:29:8:304:3:66:-14.2323,-12.3524,-48.4216:3:11:27:.:.:1:.:.:.:-0.00244028	./1:81.9509:83:38:1428:3:48:-16.4946,-29.5313,-252.541:3:4:69:.:.:1:.:.:.:-0.0276865
chrX	132888207	.	TAAA	T	208.351	REJECT	NS=2;DP=112;DPB=143.419;AC=2;AN=2;AF=0.0;RO=46;AO=3;PRO=28.7167;PAO=9.8;QR=1732;QA=60;PQR=989.467;PQA=319.8;SRF=0;SRR=46;SAF=0;SAR=3;SRP=102.898;SAP=9.52472;AB=0.0267857;ABP=220.856;RUN=1;RPP=3.73412;RPPR=4.70971;RPL=1.0;RPR=2.0;EPP=3.73412;EPPR=4.70971;DPRA=0.0;ODDS=9.3745;GTI=0;TYPE=del;CIGAR=1M3D27M;NUMALT=5;MEANALT=12.5;LEN=3;MQM=60.0;MQMR=60.0;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:40.7133:29:8:304:2:30:-14.2323,-16.4128,-65.3686:2:7:27:.:.:1:.:.:.:-0.00244028	./1:81.9509:83:38:1428:1:30:-16.4946,-33.491,-257.285:1:1:69:.:.:1:.:.:.:-0.0276865
chrX	148500282	.	CAC	TAT	10619.2	REJECT	NS=2;DP=290;DPB=335.333;AC=4;AN=4;AF=1.0;RO=0;AO=327;PRO=0.0;PAO=10.0;QR=0;QA=11975;PQR=0.0;PQA=363.0;SRF=0;SRR=0;SAF=257;SAR=70;SRP=0.0;SAP=235.225;AB=0.0;ABP=0.0;RUN=1;RPP=31.0668;RPPR=0.0;RPL=131.0;RPR=196.0;EPP=3.81381;EPPR=0.0;DPRA=0.0;ODDS=53.6126;GTI=0;TYPE=complex;CIGAR=1X1M1X;NUMALT=1;MEANALT=2.0;LEN=3;MQM=60.0612;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=0;JOINED;BaseQRankSum=1.622;Dels=0.0;FS=0.0;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.0;MQ=60.065;MQRankSum=-1.718;QD=32.465;ReadPosRankSum=-1.113;SOR=2.372	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:123.9575:78:0:0:77:2817:-260.425,-21.4086,0.0:78:100:78:0,79:3593,241,0:1:.:1:.:.:.:-0.00244028	1/1:123.9575:251:0:0:250:9158:-849.699,-69.7847,0.0:250:100:251:1,251:10481,734,0:.:1:1:.:.:.:-0.0276865
chrX	150872315	.	T	C	3371.12	REJECT	NS=1;DP=110;DPB=110.0;AC=2;AN=4;AF=1.0;RO=0;AO=110;PRO=0.0;PAO=0.0;QR=0;QA=4016;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=62;SAR=48;SRP=0.0;SAP=6.87947;AB=0.0;ABP=0.0;RUN=1;RPP=177.439;RPPR=0.0;RPL=102.0;RPR=8.0;EPP=3.08926;EPPR=0.0;DPRA=0.0;ODDS=73.058;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=59.4727;MQMR=0.0;PAIRED=0.981818;PAIREDR=0.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:160.002:110:0:0:110:4016:-361.245,-29.7287,0.0:110:100:110:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	150872329	.	G	T	2325.3	REJECT	NS=1;DP=83;DPB=83.0;AC=2;AN=4;AF=1.0;RO=1;AO=82;PRO=0.0;PAO=0.0;QR=2;QA=3011;PQR=0.0;PQA=0.0;SRF=1;SRR=0;SAF=57;SAR=25;SRP=5.18177;SAP=30.1272;AB=0.0;ABP=0.0;RUN=1;RPP=118.363;RPPR=5.18177;RPL=74.0;RPR=8.0;EPP=18.2636;EPPR=5.18177;DPRA=0.0;ODDS=56.5748;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=54.9024;MQMR=6.0;PAIRED=0.97561;PAIREDR=1.0;technology.ILLUMINA=1.0	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:160.002:83:1:2:82:3011:-252.151,-21.667,0.0:82:99:83:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	150872385	.	TGTGTGTG	T	119.803	REJECT	NS=1;DP=52;DPB=32.6923;AC=1;AN=4;AF=0.5;RO=11;AO=20;PRO=9.5;PAO=2.5;QR=379;QA=383;PQR=204.333;PQA=64.3333;SRF=0;SRR=11;SAF=4;SAR=16;SRP=26.8965;SAP=18.6449;AB=0.384615;ABP=9.02361;RUN=1;RPP=46.4397;RPPR=19.0002;RPL=0.0;RPR=20.0;EPP=18.6449;EPPR=19.0002;DPRA=0.0;ODDS=10.8666;GTI=0;TYPE=del;CIGAR=1M7D5M;NUMALT=3;MEANALT=5.0;LEN=7;MQM=58.65;MQMR=43.6364;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	0/1:47.193:52:11:379:20:383:-24.6715,0.0,-33.955:20:40:50:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	150872385	.	TGTGTGTGTG	T	119.803	REJECT	NS=1;DP=52;DPB=32.6923;AC=1;AN=3;AF=0.0;RO=11;AO=13;PRO=9.5;PAO=2.5;QR=379;QA=275;PQR=204.333;PQA=73.3333;SRF=0;SRR=11;SAF=1;SAR=12;SRP=26.8965;SAP=23.2217;AB=0.25;ABP=31.2394;RUN=1;RPP=31.2394;RPPR=19.0002;RPL=0.0;RPR=13.0;EPP=23.2217;EPPR=19.0002;DPRA=0.0;ODDS=10.8666;GTI=0;TYPE=del;CIGAR=1M9D3M;NUMALT=3;MEANALT=5.0;LEN=9;MQM=56.9231;MQMR=43.6364;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.193:52:11:379:13:275:-24.6715,-5.89822,-50.7723:13:26:50:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	150872385	.	TGTGTGTGTGTG	T	119.803	REJECT	NS=1;DP=52;DPB=32.6923;AC=1;AN=3;AF=0.0;RO=11;AO=6;PRO=9.5;PAO=0.5;QR=379;QA=132;PQR=204.333;PQA=0.0;SRF=0;SRR=11;SAF=0;SAR=6;SRP=26.8965;SAP=16.0391;AB=0.115385;ABP=69.8248;RUN=1;RPP=16.0391;RPPR=19.0002;RPL=0.0;RPR=6.0;EPP=16.0391;EPPR=19.0002;DPRA=0.0;ODDS=10.8666;GTI=0;TYPE=del;CIGAR=1M11D1M;NUMALT=3;MEANALT=5.0;LEN=11;MQM=56.6667;MQMR=43.6364;PAIRED=1.0;PAIREDR=1.0;technology.ILLUMINA=1.0;SPLITMULTIALLELIC	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	./1:47.193:52:11:379:6:132:-24.6715,-22.3965,-95.2234:6:12:50:.:.:1:.:.:.:-0.00244028	0/0:.:.:.:.:.:.:.:0:0:0:.:.:.:.:.:.:-0.0276865
chrX	153629155	.	A	G	9236.215	REJECT	NS=2;DP=277;DPB=316.0;AC=4;AN=4;AF=1.0;RO=0;AO=316;PRO=0.0;PAO=0.0;QR=0;QA=11984;PQR=0.0;PQA=0.0;SRF=0;SRR=0;SAF=215;SAR=101;SRP=0.0;SAP=92.3155;AB=0.0;ABP=0.0;RUN=1;RPP=3.45009;RPPR=0.0;RPL=162.0;RPR=154.0;EPP=7.6556;EPPR=0.0;DPRA=0.0;ODDS=71.4974;GTI=0;TYPE=snp;CIGAR=1X;NUMALT=1;MEANALT=1.0;LEN=1;MQM=39.4557;MQMR=0.0;PAIRED=1.0;PAIREDR=0.0;technology.ILLUMINA=1.0;MQ0=30;Dels=0.0;FS=0.0;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.0;MQ=38.525;QD=29.06;SOR=1.72	GT:GQ:DP:RO:QR:AO:QA:GL:GMIMUT:GMIMAF:GMICOV:AD:PL:CallHC:CallUG:CallFB:CallPI:CallSID:CallMU:LR	1/1:129.501:106:0:0:108:4060:-337.822,-29.1759,0.0:106:100:106:0,105:4412,314,0:1:.:1:.:.:.:-0.00244028	1/1:129.501:223:0:0:208:7924:-658.602,-55.9597,0.0:217:97:223:12,226:8673,602,0:.:1:1:.:.:.:-0.0276865