chromosome start end gene log2 probes weight depth chr1 10500 2421341 SSU72,PLCH2 0.134253 27 19.5922 1.10244 chr1 2422582 2431202 PLCH2 0.448062 10 6.38648 1.37736 chr1 2433501 18617471 PLCH2,PRDM16,NPHP4,CA6,MTOR,MFN2,LRRC38,KAZN 0.0661341 178 132.846 1.05182 chr1 18617470 21479562 UBR4,KIF17 -0.407045 21 16.093 0.757367 chr1 21479561 121352354 CDC42,ARID1A,PTAFR,PUM1,ZBTB8A,KIAA0319L,MYCL1,CAP1,HIVEP3,MPL,PTCH2,MUTYH,FAF1,CDKN2C,PPAP2B,DAB1,JUN,FGGY,DOCK7,JAK1,SLC35D1,LRRC7,NEGR1,FPGT-TNNI3K,AK5,MCOLN3,CLCA4,LRRC8B,EVI5,ABCA4,DPYD,COL11A1,NTNG1,CLCC1,KCND3,NRAS,WDR3,NOTCH2 -0.0213287 899 682.544 0.991427 chr1 142535933 249240121 PDE4DIP,TXNIP,LIX1L,PEX11B,ITGA10,MCL1,CGN,LAMTOR2,SH2D2A,NTRK1,FCRL5,IFI16,FCGR3A,DDR2,MPC2,TNR,ASTN1,ABL2,CEP350,CACNA1E,LAMC1,SMG7,C1orf21,CDC73,CACNA1S,PPP1R12B,SOX13,MDM4,IKBKE,IL19,TRAF5,SMYD2,USH2A,SUSD4,PRSS38,C1orf198,TBCE,MTR,CHRM3,RGS7,SDCCAG8,AKT3,SMYD3 0.323628 954 716.9 1.25892 chr2 10500 92267022 TPO,LINC00299,MBOAT2,HPCAL1,MYCN,C2orf43,ATAD2B,DNMT3A,BRE,ALK,TTC27,PRKD3,CYP1B1,SLC8A1,THADA,MSH2,MSH6,NRXN1,GPR75-ASB3,CCDC88A,VRK2,REL,USP34,EHBP1,ARHGAP25,SNRPG,TCF7L1 0.011528 794 601.241 1.01407 chr2 95326670 237943201 LOC442028,DUSP2,FAM178B,AFF3,LOC100287010,NCK2,EDAR,BUB1,ANAPC1,IL36A,PAX8,DPP10,STEAP3,MAP3K2,NCKAP5,UBXN4,THSD7B,NXPH2,ARHGAP15,DKFZp686O1327,LYPD6B,STAM2,CCDC148-AS1,KCNH7,CSRNP3,LRP2,METTL8,ZAK,WIPF1,HOXD-AS2,PDE11A,SESTD1,ITGAV,ANKRD44,SF3B1,TMEM237,NBEAL1,PARD3B,NRP2,NDUFS1,IDH1,CPS1,ERBB4,SPAG16,BARD1,XRCC5,IGFBP2,PAX3,FARSB,NYAP2,COL4A4,GIGYF2,INPP5D,UGT1A8,AGAP1 -0.00117402 1196 903.678 1.00545 chr2 237943200 242176790 HDAC4,KIF1A -0.465657 29 22.8255 0.727227 chr2 242176789 243188873 - 0.0799059 7 5.31941 1.06152 chr3 60500 65409798 CNTN4,GRM7,VHL,ATP2B2,RAF1,FBLN2,NR2C2,RFTN1,PLCL2,KCNH8,NR1D2,RARB,ZCWPW2,RBMS3,TGFBR2,MLH1,ITGA9,CTNNB1,ZDHHC3,MAP4,DAG1,DOCK3,BAP1,NISCH,PBRM1,WNT5A,ARHGEF3,FHIT,ADAMTS9 -0.0147912 627 474.924 0.996131 chr3 65409797 66579610 MAGI1 0.536554 8 6.27079 1.45616 chr3 66579609 90168173 SUCLG2,MITF,PDZRN3,CADM2,VGLL3,EPHA3 0.0226327 209 157.932 1.02111 chr3 93519632 95252544 - -0.350095 16 11.2442 0.808707 chr3 95252543 96400715 - 2.40683 9 6.76046 5.53091 chr3 96400714 96825973 EPHA6 -0.398751 10 6.97009 0.762652 chr3 96825972 96963168 EPHA6 3.18425 5 3.36428 9.12025 chr3 96963667 97972088 EPHA6 2.22789 33 21.8018 4.73583 chr3 97972087 141877242 ABI3BP,IQCB1,ADCY5,UMPS,ITGB5,MGLL,C3orf37,EPHB1,ARMC8,MRAS,ACPL2 -0.457192 347 262.526 0.734085 chr3 141877241 197961930 ATR,TRPC1,MIR548H2,KCNAB1,IQCJ-SCHIP1,EGFEM1P,MYNN,TNIK,NLGN1,NAALADL2,KCNMB2,PIK3CA,SOX2-OT,MCF2L2,DGKG,LOC100131635,BCL6,PYDC2,FGF12,ACAP2,PAK2 -0.0185116 492 375.879 0.9934 chr4 13322 49632814 GAK,FGFR3,STX18,SORCS2,CLNK,LOC441009,LDB2,KCNIP4,STIM2,C4orf19,TMEM156,RBM47,CNGA1 0.0268331 392 298.324 1.02661 chr4 52660616 67655781 SCFD2,PDGFRA,KIT,KDR,EPHA5 0.0633659 212 157.563 1.05042 chr4 67655780 179561500 UGT2A1,CDKL2,ANXA3,MAPK10,ABCG2,FAM190A,BMPR1B,STPG2,MTTP,PPP3CA,NFKB1,TET2,RPL34-AS1,ELOVL6,ANK2,SPRY1,LARP1B,MAML3,LRBA,FBXW7,KIAA0922,MARCH1,SPOCK3,PALLD,AADAT -0.0145253 847 648.477 0.996519 chr4 179561499 191025802 - 0.0835995 82 62.3061 1.0665 chr5 10500 1295381 TERT 1.44032 30 20.1965 2.74749 chr5 1295880 27758999 LPCAT1,ADCY2,FAM134B,CDH18,CDH12,CDH9 -0.438559 190 146.113 0.74419 chr5 27758998 29725593 - 0.542628 13 10.4965 1.46849 chr5 29725592 32111185 DROSHA 1.43184 18 13.4424 2.75829 chr5 32111184 34935473 - -0.290066 20 15.2251 0.865334 chr5 34935472 43358297 WDR70,RICTOR 0.458204 103 77.9754 1.39435 chr5 43358296 45907753 C5orf34 0.00786783 19 14.8139 1.01259 chr5 49555073 180008136 ANKRD55,MAP3K1,PDE4D,ADAMTS6,MAST4,PIK3R1,POC5,SERINC5,SSBP2,XRCC4,RASA1,GPR98,FAM172A,MCTP1,CAST,STARD4-AS1,APC,MCC,COMMD10,DMXL1,PRR16,LOC100505841,ALDH7A1,SLC12A2,ADAMTS19,IL4,SKP1,SPOCK1,RELL2,SPRY4,ARHGAP26,LARS,JAKMIP2-AS1,CSF1R,PDGFRB,GRIA1,SGCD,NPM1,CREBRF,LOC643201,FGFR4,ZNF354C -0.0054079 1238 938.117 1.00271 chr5 180008635 180076603 FLT4 0.329968 33 20.5672 1.27176 chr5 180077102 180904760 - -0.0654238 6 4.3355 0.961004 chr6 60500 31491427 NQO2,NRN1,ATXN1,TPMT,CDKAL1,LRRC16A -0.0159055 240 177.13 0.994568 chr6 31491426 32376398 DOM3Z,STK19,NOTCH4 -0.392197 49 22.6737 0.782461 chr6 32775420 58745455 PACSIN1,MAPK14,CDKN1A,FOXP4,CCND3,XPO5,NFKBIE,SUPT3H,CYP39A1,PTCHD4,PKHD1,MLIP,ZNF451 0.0306187 318 231.29 1.02964 chr6 61944507 171054567 EYS,OGFRL1,KCNQ5,BCKDHB,ME1,GABRR2,EPHA7,KLHL32,POU3F2,LOC728012,GRIK2,CDK19,LAMA4,ROS1,SLC35F1,RSPO3,PTPRK,SAMD3,ENPP3,PDE7B,MAP3K5,TNFAIP3,ADGB,LATS1,ESR1,RGS17,ARID1B,TMEM181,SOD2,IGF2R,SLC22A2,PARK2,PACRG -0.0112598 1035 784.353 0.998503 chr7 10500 6426280 CARD11,AIMP2,RAC1 0.12479 72 53.3312 1.09907 chr7 6426779 55510241 RAC1,COL28A1,STEAP1B,HOXA3,CREB5,SCRN1,FKBP9,C7orf10,INHBA,GLI3,HECW1,CCM2,IKZF1,EGFR -0.00717592 423 319.927 1.00155 chr7 55510740 57938684 - 0.33604 15 9.03152 1.27525 chr7 61657307 63386201 - 0.453069 12 6.33337 1.37799 chr7 63386700 159128163 CCT6P3,HIP1,MAGI2,PCLO,GRM3,CROT,ABCB1,ZNF804B,GTPBP10,MTERF,CDK6,DYNC1I1,TRRAP,CYP3A5,CYP3A4,EPHB4,MUC12,SRPK2,PIK3CG,NRCAM,IMMP2L,C7orf60,MET,ASZ1,KCND2,POT1,SND1,SMO,AHCYL2,PLXNA4,EXOC4,TBXAS1,BRAF,TMEM178B,EPHB6,EPHA1-AS1,CNTNAP2,EZH2,LRRC61,PRKAG2,PTPRN2 0.00337069 1030 774.777 1.00967 chr8 10500 17711900 DLGAP2,CSMD1,TNKS,RP1L1,FAM66D,SGCZ 0.0481852 161 117.883 1.0463 chr8 17711899 29536110 CSGALNACT1,BIN3,PTK2B,EXTL3,DUSP4 -0.45971 146 110.218 0.734253 chr8 29536109 43398986 MIR548O2,WRN,NRG1,GPR124,FGFR1,TACC1,ADAM32,ZMAT4 0.0571581 195 143.835 1.04609 chr8 46950734 146303522 PRKDC,SNTG1,PXDNL,TOX,RAB2A,MYBL1,PREX2,SULF1,KCNB2,PKIA,RALYL,RUNX1T1,LINC00535,MATN2,VPS13B,FBXO43,SNX31,RIMS2,ZFPM2,CSMD3,LINC00536,MTBP,SQLE,MYC,PVT1,ADCY8,KHDRBS3,BOP1 -0.0044328 843 644.393 1.00289 chr9 10500 5078278 SMARCA2,SLC1A1,JAK2 -0.0778313 129 98.9505 0.957546 chr9 5078277 47317179 JAK2,PTPRD,LOC389705,BNC2,CDKN2A,CDKN2B-AS1,IFT74,LINGO2,PAX5,POLR1E 0.0489359 380 279.65 1.04342 chr9 65468178 141152931 LOC642236,PGM5,FAM189A2,TRPM3,PRUNE2,GNAQ,NTRK2,ROR2,WNK2,C9orf3,PTCH1,HSD17B3,COL27A1,TNC,ASTN2,DAB2IP,STRBP,NR6A1,PPP6C,CDK9,ABL1,TSC1,SARDH,OLFM1,GPSM1,NOTCH1,MAN1B1 0.0185149 797 596.14 1.02064 chr10 60500 39076015 ADARB2,IL15RA,UPF2,BEND7,PTER,KIAA1217,GPR158,MPP7,SVIL,PARD3 -0.431773 276 210.322 0.747434 chr10 42602609 135524247 LOC441666,RET,A1CF,PRKG1,IPMK,M1,CTNNA3,CCAR1,CDH23,FAM149B1,C10orf11,ZMIZ1,NRG3,PTEN,KIF20B,PCGF5,TNKS2,PLCE1,CYP2C8,ENTPD1,HPSE2,CWF19L1,SUFU,SORCS3,RBM20,SHOC2,ATRNL1,INPP5F,FGFR2,UROS,DOCK1,KNDC1 -0.451548 802 606.962 0.736925 chr11 60500 51566742 HRAS,MOB2,NAP1L4,OLFML1,NRIP3,PTH,SERGEF,NAV2,NELL1,IMMP1L,WT1,QSER1,ELF5,LDLRAD3,LRRC4C,TTC17,AMBRA1,PTPRJ 0.0196477 380 287.827 1.01989 chr11 55028438 134946016 FADS1,SF1,MEN1,YIF1A,GSTP1,ALDH3B1,CCND1,SHANK2,CLPB,MRPL48,TSKU,GAB2,DLG2,SYTL2,GRM5,MRE11A,AMOTL1,MAML2,YAP1,GUCY1A2,ACAT1,ATM,ZBTB16,MLL,CBL,TRIM29,SORL1,CLMP,SIAE,CHEK1,NTM -0.00117398 816 614.453 1.00497 chr12 60500 11993912 ERC1,TULP3,CCND2,ANO2,CD163L1,A2ML1,ETV6 0.0307168 122 92.3914 1.02728 chr12 11993911 12273512 ETV6 -0.185659 93 71.6682 0.882144 chr12 12274011 34431528 LRP6,CDKN1B,MGST1,PLEKHA5,SOX5,KRAS,CCDC91,PKP2 -0.0185943 198 147.425 0.994463 chr12 37857193 41701437 - -0.409211 25 18.5549 0.760009 chr12 41701436 42901265 - 2.77937 9 6.926 7.00501 chr12 42901264 57607768 NELL2,ARID2,TUBA1B,DIP2B,ATF1,ATF7,ERBB3,BAZ2A -0.479329 181 135.552 0.721699 chr12 57607767 57914222 DDIT3 3.05428 10 6.95964 8.37521 chr12 57914721 58520144 CDK4 3.53273 12 8.57114 11.5983 chr12 58520643 60916332 SLC16A7 3.07097 17 12.9918 8.43946 chr12 60916331 66908608 SRGAP1 -0.432304 43 33.0768 0.745831 chr12 66908607 67954874 - -0.0579432 8 6.26063 0.966245 chr12 67954873 69003947 - 2.10195 8 6.11156 4.34939 chr12 69004446 69669616 MDM2 2.817 17 12.3802 7.06433 chr12 69669615 70541066 - 2.34943 7 5.12415 5.10572 chr12 70541565 85204790 SYT1,PTPRQ -0.444059 106 82.5938 0.747667 chr12 85204789 88658400 LRRIQ1,CEP290 0.0166753 25 19.4678 1.01696 chr12 88658399 92702070 DUSP6,ATP2B1,LUM -0.224644 47 35.044 0.862747 chr12 92702069 133841395 UHRF1BP1L,MYBPC1,CHST11,NUAK1,BTBD11,USP30,PPTC7,NAA25,PTPN11,MAP1LC3B2,HNF1A,RSRC2,ZNF664-FAM101A,TMEM132C,ZNF605 0.0261092 328 251.346 1.02341 chr13 19020500 105152288 ANKRD26P3,CRYL1,CDK8,FLT3,FLT1,TEX26-AS1,BRCA2,N4BP2L2,RFC3,NBEA,ALG5,EPSTI1,RB1,PCDH9,KLHL1,EDNRB,SPRY2,GPC6,ABCC4,FARP1,CLYBL 0.0119441 804 604.201 1.01461 chr13 105152287 107418370 - -0.45566 16 12.5671 0.734405 chr13 107418369 110108034 FAM155A,MYO16 0.0555301 20 15.5177 1.05008 chr13 110108033 111460835 IRS2,COL4A2 -0.417517 26 18.2627 0.755855 chr13 111460834 112353494 - 0.672955 6 4.71689 1.61703 chr13 112510572 115109378 GRTP1 -0.393884 17 13.2874 0.770523 chr14 19057400 20346012 - 0.497337 13 7.21662 1.44168 chr14 20346511 107289040 BCL2L2,THTPA,STXBP6,NOVA1,MIR548AI,AP4S1,AKAP6,RALGAPA1,NKX2-1,SLC25A21,MDGA2,SOS2,ATL1,NID2,SOCS4,C14orf37,CCDC175,SLC38A6,SYNE2,ESR2,FUT8,GPHN,MAP3K9,SIPA1L1,LTBP2,IFT43,SPTLC2,NRXN3,CEP128,TSHR,FOXN3,RPS6KA5,DDX24,GLRX5,HSP90AA1,KLC1,AKT1 0.020917 735 556.033 1.02182 chr15 20044632 21398319 NBEAP1 -0.266834 13 6.96087 0.837944 chr15 22262613 66511021 LOC727924,HERC2,TJP1,TRPM1,ATPBD4-AS1,SPRED1,FSIP1,PAK6,LTK,MGA,EPB42,SEMA6D,GALK2,SPPL2A,MYO5C,WDR72,RAB27A,ZNF280D,RORA,TLN2,CSNK1G1 -0.456207 432 321.136 0.735504 chr15 66511020 102520892 MAP2K1,SMAD3,AAGAB,ANP32A,THSD4,NEO1,LOC729911,BCL2A1,FAM108C1,EFTUD1,AGBL1,NTRK3,RHCG,IDH2,PRC1,C15orf32,LOC145820,FAM169B,IGF1R,ADAMTS17,PCSK6 0.351641 645 498.162 1.2814 chr16 60500 35148746 CLCN7,TSC2,PDPK1,KREMEN2,CREBBP,DNAJA3,RBFOX1,USP7,GRIN2A,ATF7IP2,SOCS1,PDXDC1,TMC5,DNAH3,PALB2,SULT1A1,BOLA2B,INO80E,ZNF668,FUS 0.0382109 429 312.9 1.03599 chr16 46457167 63157986 ANKRD26P1,CYLD,TOX3,FTO,NLRC5,NDRG4 -0.432499 151 113.232 0.745492 chr16 63157985 90294253 CDH5,CDH1,TMCO7,NQO1,PHLPP2,PKD1L3,WDR59,CNTNAP4,VAT1L,NECAB2,ZNF276,DEF8 0.0574363 266 202.965 1.04681 chr17 500 22220573 WSCD1,FXR2,TP53,AURKB,NTN1,MAP2K4,HS3ST3A1,DRG2 0.0412136 194 143.626 1.03551 chr17 25268558 27481069 - 0.0638443 19 13.4016 1.05191 chr17 27481068 30711280 NSRP1,NF1,RHOT1 -0.474127 112 79.2826 0.723406 chr17 30711279 81194710 ASIC2,ZNHIT3,DDX52,FBXL20,ERBB2,RARA,STAT3,BRCA1,DCAKD,CRHR1,GOSR2,SKAP1,COL1A1,PPM1E,BRIP1,TANC2,CD79B,PRKCA,MAP2K6,LINC00673,CASKIN2,DNAH17,RPTOR,NPLOC4 0.0132405 585 430.786 1.01651 chr18 10500 15381134 C18orf56,TYMS,LPIN2,L3MBTL4,C18orf1 0.0163384 111 82.753 1.01884 chr18 18520841 78016748 ROCK1,CDH2,FAM59A,NOL4,INO80C,KIAA1328,RIT2,EPG5,SMAD2,DYM,SMAD4,DCC,RAB27B,TCF4,LMAN1,CDH20,TNFRSF11A,BCL2,DOK6,NETO1,PARD6G 0.0277852 552 414.695 1.02524 chr19 60500 24364012 STK11,DOT1L,TLE2,GNA11,GIPC3,MAP2K2,LOC100128568,INSR,ARHGEF18,MUC16,CDC37,KEAP1,SMARCA4,CACNA1A,PODNL1,NOTCH3,EPS15L1,JAK3,SLC5A5,GATAD2A,RPSAP58 0.0590614 380 273.512 1.05042 chr19 28263181 59118483 LOC284395,CCNE1,CEBPA,RYR1,ZNF546,AKT2,LOC100505495,CD79A,GSK3A,PSG11,CEACAM20,ERCC2,CCDC61,BCL2L12,LRRC4B,ZNF615,LOC100128252,ZNF606 0.0648454 295 218.048 1.05252 chr20 60500 26256532 SIRPD,PTPRA,ITPA,CRLS1,PLCB4,C20orf94,MACROD2,KIF16B,OVOL2,SLC24A3,NINL -0.00373834 192 148.644 1.00306 chr20 29420068 62965020 DEFB116,ITCH,SRC,PPP1R16B,TOP1,PLCG1,YWHAB,ELMO2,AURKA,VAPB,GNAS-AS1,GNAS,CDH4,ARFRP1 0.00881644 353 260.977 1.01394 chr21 9411693 11185554 - 0.167098 11 5.57339 1.14139 chr21 14370290 25345441 LIPI,RBM11,CHODL,NCAM2 -0.0172463 87 64.9672 0.994992 chr21 25345440 48119395 RUNX1,CBR3-AS1,KCNJ6,ERG,DSCAM,UMODL1,HSF2BP,SLC19A1 -0.370098 193 145.608 0.779093 chr22 16050500 25501410 TPTEP1,ANKRD62P1-PARP4P3,XKR3,CECR2,CLDN5,CRKL,GUSBP11,SMARCB1,KIAA1671 0.0851634 95 66.3061 1.07015 chr22 25501909 30061095 CRYBB1,TTC28,CHEK2,EWSR1,NF2 -0.0626938 115 85.8246 0.96186 chr22 30064267 39483505 NF2,SYN3,MB,RAC2,SOX10,APOBEC3G 0.0527237 95 72.038 1.04177 chr22 39484004 39637713 PDGFB -0.335444 23 17.4422 0.794597 chr22 39637712 42059851 PDGFB,TNRC6B,EP300,DESI1,XRCC6 -0.0435486 89 65.3698 0.976478 chr22 42060350 51244066 CYP2D6,BIK,LINC00229,FLJ46257,CPT1B 0.0899123 74 56.0008 1.06929 chrX 60500 2561647 CRLF2 1.52253 23 12.4313 2.97132 chrX 2561646 4653265 XG,ARSF 2.32422 17 12.2041 5.13739 chrX 4653264 10942673 NLGN4X 0.951266 45 34.0583 2.14257 chrX 10942672 13652870 - 2.40566 20 15.1003 5.34066 chrX 13652869 16352969 - 0.917729 19 13.9893 1.89738 chrX 16352968 19499971 - 2.45883 23 17.4682 5.66689 chrX 19501149 23404334 LOC100873065 2.80571 27 21.338 7.02158 chrX 23404333 31504390 KLHL15,DMD 1.15411 60 46.0369 2.34853 chrX 31504889 34071142 DMD 2.55621 17 13.0783 5.99214 chrX 34071141 40507998 LANCL3 0.924811 46 36.1274 1.90599 chrX 40508497 47864357 USP9X,KDM6A,CXorf36,SLC9A7,ARAF 2.11837 155 110.869 4.38767 chrX 47864356 55358602 GATA1,PHF8 1.30972 59 41.6211 2.49803 chrX 55358601 58180101 SPIN3 0.898777 21 15.3586 1.87247 chrX 61931663 80426930 ARHGEF9,AR,OPHN1,EDA,BCYRN1,PIN4,FTX,TBX22 0.910314 177 131.052 1.89139 chrX 80426929 94676963 DACH2,PCDH11X 0.772685 101 73.4768 1.72826 chrX 94676962 155260060 DIAPH2,LOC442459,BHLHB9,IL1RAPL2,AMMECR1,PAK3,ALG13,HTR2C,XIAP,STAG2,HS6ST2,FMR1-AS1,CD99L2,GABRA3,FAM58A 0.92881 488 360.256 1.92276 chrY 10500 2654042 - 1.43559 17 11.0704 2.86884 chrY 2654541 28649168 - -3.72105 144 98.5636 0.130802 chrY 59099791 59363066 - -0.0244204 2 1.48068 0.989748