### A Pluto.jl notebook ###
# v0.20.4

using Markdown
using InteractiveUtils

# ╔═╡ 8073dbb4-7292-11ed-1c5c-2d272632f926
begin
	using PlutoUI, CairoMakie, Suppressor
	using PythonCall, CondaPkg, ArgoData
end

# ╔═╡ 0877b3e0-86c0-4143-848b-ecf87f4741f3
md"""# `argopy` via `Julia`

[argopy]( https://github.com/euroargodev/argopy#readme) is a python library to access, manipulate, and visualize [Argo data](https://argopy.readthedocs.io/en/latest/what_is_argo.html#what-is-argo). 

This notebook shows how to (1) install `argopy` into `Julia` via [CondaPkg.jl](https://github.com/JuliaPy/CondaPkg.jl) and then (2) use `argopy` via [PythonCall.jl](https://github.com/JuliaPy/PythonCall.jl).
"""

# ╔═╡ bab9e8ec-46d1-44df-906e-92510de9d28f
TableOfContents()

# ╔═╡ ffa4f145-1ade-46c0-88fa-d0ea62c8177e
md"""## Plot Data"""

# ╔═╡ aace82bb-82f0-4699-8d0e-97d27fa00b17
md"""## Extract Data

Extract the array of `TEMP` values from the fetched `xarray.Dataset`.
"""

# ╔═╡ 4dbff8d5-a856-4387-bc8d-80df18376307
md"""## Fetch Data

Here we fetch data from a few selected Argo floats.
"""

# ╔═╡ db2f5431-493a-4cb3-8fd8-6af4e923da02
md"""## Software Packages"""

# ╔═╡ f6d5abcf-0498-4cfe-a5f1-21ba920576ef
argopy=try
    ArgoData.pyimport(:argopy)
catch
    ArgoData.conda(:argopy)
    ArgoData.pyimport(:argopy)
end

# ╔═╡ 68fc22ed-c8a0-498a-aca7-fc930b430fc8
begin
	ds_fetcher=argopy.DataFetcher().float(pylist([6902746, 6902747, 6902757, 6902766]))
	ds_points = ds_fetcher.to_xarray()
	ds_profiles = ds_points.argo.point2profile()
end

# ╔═╡ 545b7114-ccaf-4267-b9b5-f2531c5476d2
begin
	TEMP=ds_profiles["TEMP"]
	TEMP_values=pyconvert(Array,TEMP.values)
end

# ╔═╡ cfffd375-bf1b-4317-8dba-9dc6284c3257
function plot_profiles!(ax,TIME,PRES,TEMP,cmap)
	ii=findall(((!ismissing).(PRES)).*((!ismissing).(TEMP)))

	x=TIME[ii]
	y=-PRES[ii] #pressure in decibars ~ depth in meters
	co=Float64.(TEMP[ii])
	rng=extrema(co)

	sca=scatter!(ax, x , y ,color=co,colormap=cmap, markersize=5)

#	ax.xlabel="time (day)"
	ax.ylabel="depth (m)"

	sca
end

# ╔═╡ 0c076328-675c-49e4-9787-f7f73730d97d
function plot_samples(ds_profiles)

	(nt,nd)=size(pyconvert(Array,ds_profiles["PRES"].values))
	#TIME=[ds_profiles["TIME"].values[i] for i in 1:nt]
	TIME=[i for i in 1:nt, j in 1:nd]

	arr=(PRES=pyconvert(Array,ds_profiles["PRES"].values),
	TEMP=pyconvert(Array,ds_profiles["TEMP"].values),
	PSAL=pyconvert(Array,ds_profiles["PSAL"].values),
	TIME=TIME)
	
	fig1=Figure()
	lims=(nothing, nothing, -500.0, 0.0)

	#ttl="Float wmo="*string(wmo)
	ax=Axis(fig1[1,1]) #,title=ttl*", temperature, degree C", limits=lims)
	hm1=plot_profiles!(ax,arr.TIME,arr.PRES,arr.TEMP,:thermal)
	Colorbar(fig1[1,2], hm1, height=Relative(0.65))

	ax=Axis(fig1[2,1]) #,title=ttl*", salinity, psu", limits=lims)
	hm2=plot_profiles!(ax,arr.TIME,arr.PRES,arr.PSAL,:viridis)
	Colorbar(fig1[2,2], hm2, height=Relative(0.65))

	fig1
end

# ╔═╡ 30fd48cf-1f82-4b7b-bd99-23ba47e4d32a
plot_samples(ds_profiles)

# ╔═╡ 00000000-0000-0000-0000-000000000001
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[compat]
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CairoMakie = "~0.12.11"
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PlutoUI = "~0.7.49"
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Suppressor = "~0.2.8"
"""

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git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.3"

[[deps.Tricks]]
git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505"
uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775"
version = "0.1.10"

[[deps.TriplotBase]]
git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b"
uuid = "981d1d27-644d-49a2-9326-4793e63143c3"
version = "0.1.0"

[[deps.URIParser]]
deps = ["Unicode"]
git-tree-sha1 = "53a9f49546b8d2dd2e688d216421d050c9a31d0d"
uuid = "30578b45-9adc-5946-b283-645ec420af67"
version = "0.4.1"

[[deps.URIs]]
git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.5.1"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
version = "1.11.0"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
version = "1.11.0"

[[deps.UnicodeFun]]
deps = ["REPL"]
git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1"
version = "0.4.1"

[[deps.Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.22.0"
weakdeps = ["ConstructionBase", "InverseFunctions"]

    [deps.Unitful.extensions]
    ConstructionBaseUnitfulExt = "ConstructionBase"
    InverseFunctionsUnitfulExt = "InverseFunctions"

[[deps.UnsafePointers]]
git-tree-sha1 = "c81331b3b2e60a982be57c046ec91f599ede674a"
uuid = "e17b2a0c-0bdf-430a-bd0c-3a23cae4ff39"
version = "1.0.0"

[[deps.WeakRefStrings]]
deps = ["DataAPI", "InlineStrings", "Parsers"]
git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "1.4.2"

[[deps.WebP]]
deps = ["CEnum", "ColorTypes", "FileIO", "FixedPointNumbers", "ImageCore", "libwebp_jll"]
git-tree-sha1 = "aa1ca3c47f119fbdae8770c29820e5e6119b83f2"
uuid = "e3aaa7dc-3e4b-44e0-be63-ffb868ccd7c1"
version = "0.1.3"

[[deps.WoodburyMatrices]]
deps = ["LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511"
uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
version = "1.0.0"

[[deps.WorkerUtilities]]
git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7"
uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.13.5+0"

[[deps.XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"]
git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.42+0"

[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "56c6604ec8b2d82cc4cfe01aa03b00426aac7e1f"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.6.4+1"

[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283"
uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
version = "1.8.6+3"

[[deps.Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e9216fdcd8514b7072b43653874fd688e4c6c003"
uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
version = "1.0.12+0"

[[deps.Xorg_libXdmcp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "89799ae67c17caa5b3b5a19b8469eeee474377db"
uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
version = "1.1.5+0"

[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058"
uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
version = "1.3.6+3"

[[deps.Xorg_libXrender_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "a490c6212a0e90d2d55111ac956f7c4fa9c277a6"
uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa"
version = "0.9.11+1"

[[deps.Xorg_libpthread_stubs_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9"
uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
version = "0.1.2+0"

[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
version = "1.17.0+3"

[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "6dba04dbfb72ae3ebe5418ba33d087ba8aa8cb00"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.5.1+0"

[[deps.YAML]]
deps = ["Base64", "Dates", "Printf", "StringEncodings"]
git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00"
uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
version = "0.4.12"

[[deps.ZipFile]]
deps = ["Libdl", "Printf", "Zlib_jll"]
git-tree-sha1 = "f492b7fe1698e623024e873244f10d89c95c340a"
uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
version = "0.10.1"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+0"

[[deps.isoband_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c"
uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4"
version = "0.2.3+0"

[[deps.libaec_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "f5733a5a9047722470b95a81e1b172383971105c"
uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0"
version = "1.1.3+0"

[[deps.libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9"
uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b"
version = "3.11.0+0"

[[deps.libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.15.2+0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.11.0+0"

[[deps.libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.3+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "055a96774f383318750a1a5e10fd4151f04c29c5"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.46+0"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.5+0"

[[deps.libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.7+2"

[[deps.libwebp_jll]]
deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
git-tree-sha1 = "d2408cac540942921e7bd77272c32e58c33d8a77"
uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
version = "1.5.0+0"

[[deps.libzip_jll]]
deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "e797fa066eba69f4c0585ffbd81bc780b5118ce2"
uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
version = "1.11.2+2"

[[deps.micromamba_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
git-tree-sha1 = "b4a5a3943078f9fd11ae0b5ab1bdbf7718617945"
uuid = "f8abcde7-e9b7-5caa-b8af-a437887ae8e4"
version = "1.5.8+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.59.0+0"

[[deps.oneTBB_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493"
uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
version = "2021.12.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "10164.0.1+0"

[[deps.x265_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "dcc541bb19ed5b0ede95581fb2e41ecf179527d2"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.6.0+0"
"""

# ╔═╡ Cell order:
# ╟─0877b3e0-86c0-4143-848b-ecf87f4741f3
# ╟─bab9e8ec-46d1-44df-906e-92510de9d28f
# ╟─ffa4f145-1ade-46c0-88fa-d0ea62c8177e
# ╟─30fd48cf-1f82-4b7b-bd99-23ba47e4d32a
# ╟─aace82bb-82f0-4699-8d0e-97d27fa00b17
# ╠═545b7114-ccaf-4267-b9b5-f2531c5476d2
# ╟─4dbff8d5-a856-4387-bc8d-80df18376307
# ╠═68fc22ed-c8a0-498a-aca7-fc930b430fc8
# ╟─db2f5431-493a-4cb3-8fd8-6af4e923da02
# ╠═8073dbb4-7292-11ed-1c5c-2d272632f926
# ╠═f6d5abcf-0498-4cfe-a5f1-21ba920576ef
# ╟─0c076328-675c-49e4-9787-f7f73730d97d
# ╟─cfffd375-bf1b-4317-8dba-9dc6284c3257
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002