{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "###############################################\n",
    "##     Press the \"Run\" button above          ##\n",
    "##     Fernando Pérez-García, 2020           ##\n",
    "##     fernando.perezgarcia.17@ucl.ac.uk     ##\n",
    "###############################################\n",
    "\n",
    "from pathlib import Path\n",
    "from IPython.display import Javascript\n",
    "from IPython.core.display import display, HTML\n",
    "\n",
    "def say(string, header=True):\n",
    "    if header: string = f'<h1>{string}</h1>'\n",
    "    display(HTML(string))\n",
    "\n",
    "# Download repository\n",
    "say('Downloading repository...')\n",
    "repoName = 'Semiology-Visualisation-Tool'\n",
    "repoDir = Path(f'{repoName}-master')\n",
    "url = f'https://github.com/thenineteen/{repoName}/archive/master.zip'\n",
    "archiveFilePath = f'{repoName}.zip'\n",
    "downloadAndExtractArchive(url, archiveFilePath, '.')\n",
    "\n",
    "# Install Python module\n",
    "say('Installing libraries...')\n",
    "pip_install(f'--quiet --editable {repoDir}')\n",
    "\n",
    "# Load Python and Slicer modules\n",
    "say('Loading module...')\n",
    "moduleFactory = slicer.app.moduleManager().factoryManager()\n",
    "modulePath = repoDir / 'slicer/SemiologyVisualisation.py'\n",
    "moduleFactory.registerModule(qt.QFileInfo(str(modulePath)))\n",
    "moduleFactory.loadModules([modulePath.stem])\n",
    "selectModule('SemiologyVisualisation')\n",
    "slicer.semiologyVisualisation.setLiteMode()\n",
    "\n",
    "# Preload data\n",
    "say('Loading data...')\n",
    "slicer.semiologyVisualisation.loadDataButton.clicked()\n",
    "\n",
    "say('Done. Trying to open in a new tab...')\n",
    "html = \"\"\"<a href=\"../desktop\" target=\"_blank\"><img src=\"https://www.slicer.org/img/3DSlicerLogo-H-Color-218x144.png\"/>\n",
    "<h1><center>Click here to manually open 3D Slicer in a new tab</center></h1></a>\"\"\"\n",
    "say(html, header=False)\n",
    "\n",
    "display(Javascript('window.open(\"../desktop\");'))"
   ]
  }
 ],
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   "display_name": "Slicer 4.11",
   "language": "python",
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   "file_extension": ".py",
   "mimetype": "text/x-python",
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