name	homepage	html_url	description	topics	is_anvil	is_gdscn	is_template	book_title
AnVIL_Book_Getting_Started	https://jhudatascience.org/AnVIL_Book_Getting_Started	https://github.com/jhudsl/AnVIL_Book_Getting_Started	A guide for getting started using AnVIL 	anvil, cloud-computing	TRUE	FALSE	FALSE	Getting Started on AnVIL
AnVIL_Urban_Genomics_PCA	https://hutchdatascience.org/AnVIL_Urban_Genomics_PCA/	https://github.com/fhdsl/AnVIL_Urban_Genomics_PCA	Lab module and lectures for exploring PCA using feral pigeon populations	anvil, genomics, pca, urban-data-science	TRUE	FALSE	FALSE	AnVIL Urban Genomics: Identifying population structure among feral pigeon populations
AnVIL_Book_Instructor_Guide	https://jhudatascience.org/AnVIL_Book_Instructor_Guide	https://github.com/jhudsl/AnVIL_Book_Instructor_Guide	A guide for instructors using AnVIL for workshops, lessons, or courses.	anvil, education	TRUE	FALSE	FALSE	AnVIL Instructor Guide
AnVIL_WDLs	https://github.com/fhdsl/AnVIL_WDLs/tree/main	https://github.com/fhdsl/AnVIL_WDLs	Raw WDL workflow files for use on AnVIL and other platforms	anvil, genomics, wdl, workflows	TRUE	FALSE	FALSE	AnVIL WDL Workflows
GDSCN_Book_Statistics_for_Genomics_PCA	https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_PCA/	https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_PCA	A set of lab modules for PCA analysis	anvil, gdscn, genomics	TRUE	TRUE	FALSE	Statistics for Genomics: PCA
AnVIL_Book_Epigenetics_Intro	https://hutchdatascience.org/AnVIL_Book_Epigenetics_Intro/	https://github.com/fhdsl/AnVIL_Book_Epigenetics_Intro	"An introductory activity for epigenetics, or the idea of ""nature versus nurture"" in genetics. Learners use the UCSC Genome Browser."	anvil, course, epigenetics, human-genomes, module, ucsc-browser	TRUE	FALSE	FALSE	Epigenetics on AnVIL: Nature vs Nurture
AnVIL_Data_Subsetting	https://hutchdatascience.org/AnVIL_Data_Subsetting/	https://github.com/fhdsl/AnVIL_Data_Subsetting	Tutorial for running the fastq_subsample WDL workflow on AnVIL!	anvil, genomics, wdl, wdl-workflow, workflow	TRUE	FALSE	FALSE	AnVIL: Subsetting Your Data with WDL
GDSCN_BioDIGS_Book	https://hutchdatascience.org/GDSCN_BioDIGS_Book/	https://github.com/fhdsl/GDSCN_BioDIGS_Book	Activities for using BioDIGS data in the classroom. This is the companion book to the BioDIGS project.	anvil, biodigs, course, gdscn, r-programming, tutorial	TRUE	TRUE	FALSE	GDSCN Book: BioDIGS in the Classroom
GDSCN_SARS_RStudio_on_AnVIL	https://hutchdatascience.org/GDSCN_SARS_RStudio_on_AnVIL/	https://github.com/fhdsl/GDSCN_SARS_RStudio_on_AnVIL	Lab module and lectures for identifying phylogenetic history of SARS variants using R	anvil, gdscn, phylogenetic-analysis, sars-cov-2	TRUE	TRUE	FALSE	GDSCN Book: SARS with RStudio on AnVIL
AnVIL_SRA_Data	https://hutchdatascience.org/AnVIL_SRA_Data/	https://github.com/fhdsl/AnVIL_SRA_Data	Pull Sequence Read Archive (SRA) data into AnVIL	anvil, genomics, ncbi-database, sequence-read-archive	TRUE	FALSE	FALSE	AnVIL: SRA Data
AnVIL_Demos	https://hutchdatascience.org/AnVIL_Demos/	https://github.com/fhdsl/AnVIL_Demos	⏱ 30-minute demos and tutorials from our live AnVIL series	anvil, cloud, cloud-computing, genomics, research	TRUE	FALSE	FALSE	AnVIL Demos
GDSCN_Book_SARS_Galaxy_on_AnVIL	https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnVIL/	https://github.com/jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL	Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy	anvil, gdscn, genomics, module, sars-cov-2, variant-detection	TRUE	TRUE	FALSE	GDSCN Book: SARS with Galaxy on AnVIL
GDSCN_Book_swirl	https://jhudatascience.org/GDSCN_Book_swirl/	https://github.com/jhudsl/GDSCN_Book_swirl	Lab exercise: learn basic R programming through interactive swirl lessons	gdscn, swirl	FALSE	TRUE	FALSE	Intro R with swirl 
GDSCN_Book_Statistics_for_Genomics_Differential_Expression	https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_Differential_Expression/	https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_Differential_Expression	A set of lab modules for an introduction to differential gene expression	anvil, cloud-computing, gdscn, gene-expression	TRUE	TRUE	FALSE	Statistics for Genomics: Differential Expression
GDSCN_Book_Statistics_for_Genomics_scRNA-seq	http://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_scRNA-seq/	https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_scRNA-seq	A set of lab modules for single cell RNA-seq analysis	anvil, gdscn, rna-seq, scrna-seq	TRUE	TRUE	FALSE	Statistics for Genomics: scRNAseq
AnVIL_Phylogenetic-Techniques	https://jhudatascience.org/AnVIL_Phylogenetic-Techniques/	https://github.com/jhudsl/AnVIL_Phylogenetic-Techniques	A semester-long course on the basics of molecular phylogenetic techniques	anvil, r-programming	TRUE	FALSE	FALSE	Molecular Phylogenetic Techniques