# number of simulations n_sim <- 2 # number of replicate trees per simulation n_rep <- 2 # constant-node variable ('birth_rate') assignment birth_rate <- [0.8, 0.9] # alternatively, stochastic-node variable ('birth_rate') assignment # (comment out previous command) # birth_rate ~ exponential(n=n_sim, rate=1.0) # deterministic-node variable ('det_birth_rate') assignment det_birth_rate := sse_rate(name="lambda", value=birth_rate, event="speciation") # alternatively, deterministic node can also be specified as: # (comment out previous command) # det_birth_rate := sse_rate(name="lambda", value=[0.8, 0.9], states=[0,0,0], event="w_speciation") # deterministic-node variable ('sse_stash') assignment stash := sse_stash(flat_rate_mat=[det_birth_rate]) # stochastic-node variable ('trs') assignment ori <- 2.0 trs ~ discrete_sse(n=n_sim, nr=n_rep, stash=stash, start_state=[0,0], stop="age", stop_value=ori, origin="true")