[project]
name = "methods-mcp"
version = "0.1.7"
description = "Lightweight, on-demand MCP server for structured methods extraction and reproducibility heuristics on academic papers."
readme = "README.md"
license = "MIT"
authors = [
    { name = "Flynn Lachendro", email = "flynnlachendro@hotmail.co.uk" },
]
maintainers = [
    { name = "Flynn Lachendro", email = "flynnlachendro@hotmail.co.uk" },
]
requires-python = ">=3.11"
keywords = ["mcp", "model-context-protocol", "academic-papers", "ai-for-science", "reproducibility", "fastmcp", "anthropic", "claude"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Typing :: Typed",
]
dependencies = [
    "fastmcp>=2.0.0",
    "httpx>=0.27.0",
    "pydantic>=2.6.0",
    "loguru>=0.7.0",
    "anthropic>=0.40.0",
    "selectolax>=0.3.20",
    "pypdf>=4.0.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=8.0.0",
    "pytest-asyncio>=0.23.0",
    "ruff>=0.6.0",
    "mypy>=1.10.0",
    "respx>=0.21.0",
]
agent = [
    "claude-agent-sdk>=0.1.0",
]

[project.urls]
Homepage = "https://github.com/FlynnLachendro/methods-mcp"
Repository = "https://github.com/FlynnLachendro/methods-mcp"
Issues = "https://github.com/FlynnLachendro/methods-mcp/issues"

[project.scripts]
methods-mcp = "methods_mcp.server:main"

[build-system]
requires = ["hatchling>=1.18.0"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src/methods_mcp"]

[tool.ruff]
line-length = 100
target-version = "py311"
src = ["src"]

[tool.ruff.lint]
select = [
    "E",      # pycodestyle errors
    "W",      # pycodestyle warnings
    "F",      # pyflakes
    "I",      # isort
    "B",      # flake8-bugbear
    "UP",     # pyupgrade
    "C4",     # flake8-comprehensions
    "SIM",    # flake8-simplify
    "RUF",    # ruff-specific
    "N",      # pep8-naming
    "S",      # flake8-bandit (security)
    "A",      # flake8-builtins (shadowing built-ins)
    "PT",     # flake8-pytest-style
    "PTH",    # flake8-use-pathlib
    "ASYNC",  # flake8-async
    "PIE",    # flake8-pie
    "T20",    # flake8-print (no stray print() in src/)
]
ignore = [
    "E501",     # line too long (handled by formatter)
    "S101",     # use of assert (fine in tests)
    "ASYNC109", # we deliberately expose `timeout` kwargs that pass through to httpx
]

[tool.ruff.lint.per-file-ignores]
"tests/**/*.py" = [
    "S101",   # asserts are the point
    "S105",   # hardcoded fake passwords ok in tests
    "S106",
    "S311",   # pseudo-random ok in tests
    "PT011",  # pytest.raises match-arg loose ok
]
"examples/**/*.py" = [
    "T20",    # examples print for demo clarity
]

[tool.ruff.lint.isort]
known-first-party = ["methods_mcp"]

[tool.ruff.format]
docstring-code-format = true

[tool.mypy]
python_version = "3.11"
strict = true
warn_unused_ignores = true
warn_redundant_casts = true
warn_unreachable = true
disallow_untyped_decorators = false
plugins = ["pydantic.mypy"]

[[tool.mypy.overrides]]
module = ["fastmcp.*", "selectolax.*", "claude_agent_sdk.*"]
ignore_missing_imports = true

[tool.pytest.ini_options]
asyncio_mode = "auto"
testpaths = ["tests"]
addopts = "-v --tb=short"