Basic Statistics
Measure | Value |
---|---|
Filename | IMR90-H3K4me3-1-1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4674234 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-36 |
%GC | 59 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAA | 14263 | 0.30514090651002923 | Illumina Single End Adapter 1 (96% over 33bp) |
TATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAA | 11364 | 0.24312004918880825 | Illumina Single End Adapter 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTGAAA | 5280 | 0.0 | 33.69036 | 30 |
GCTTGAA | 5870 | 0.0 | 29.717588 | 29 |
TGCTTGA | 6170 | 0.0 | 29.210157 | 28 |
ATCGGAA | 7500 | 0.0 | 27.816954 | 2 |
TATCGGA | 2300 | 0.0 | 27.67439 | 1 |
TCGTATG | 11085 | 0.0 | 27.421122 | 13 |
CTCGTAT | 10675 | 0.0 | 27.299683 | 12 |
TATGCCG | 10435 | 0.0 | 27.260887 | 16 |
CGTATGC | 10755 | 0.0 | 27.244026 | 14 |
ATGCCGT | 10120 | 0.0 | 27.108133 | 17 |
GTATGCC | 10660 | 0.0 | 27.098253 | 15 |
GCTCGTA | 10390 | 0.0 | 27.036465 | 11 |
CATCGGA | 3235 | 0.0 | 26.903597 | 1 |
CCGTCTT | 10465 | 0.0 | 26.653557 | 20 |
AGCTCGT | 10325 | 0.0 | 26.49503 | 10 |
TCGGAAG | 8755 | 0.0 | 26.473783 | 3 |
CTGCTTG | 7500 | 0.0 | 26.401379 | 27 |
GATCGGA | 2750 | 0.0 | 26.18998 | 1 |
ATCGTAT | 650 | 0.0 | 26.164532 | 12 |
GCCGTCT | 10675 | 0.0 | 26.16302 | 19 |