#No. Label Name: R G B A 0 Unknown 0 0 0 0 1 Left-Cerebral-Exterior 70 130 180 0 2 Left-Cerebral-White-Matter 245 245 245 0 3 Left-Cerebral-Cortex 205 62 78 0 4 Left-Lateral-Ventricle 120 18 134 0 5 Left-Inf-Lat-Vent 196 58 250 0 6 Left-Cerebellum-Exterior 0 148 0 0 7 Left-Cerebellum-White-Matter 220 248 164 0 8 Left-Cerebellum-Cortex 230 148 34 0 9 Left-Thalamus-unused 0 118 14 0 10 Left-Thalamus 0 118 14 0 11 Left-Caudate 122 186 220 0 12 Left-Putamen 236 13 176 0 13 Left-Pallidum 12 48 255 0 14 3rd-Ventricle 204 182 142 0 15 4th-Ventricle 42 204 164 0 16 Brain-Stem 119 159 176 0 17 Left-Hippocampus 220 216 20 0 18 Left-Amygdala 103 255 255 0 19 Left-Insula 80 196 98 0 20 Left-Operculum 60 58 210 0 21 Line-1 60 58 210 0 22 Line-2 60 58 210 0 23 Line-3 60 58 210 0 24 CSF 60 60 60 0 25 Left-Lesion 255 165 0 0 26 Left-Accumbens-area 255 165 0 0 27 Left-Substancia-Nigra 0 255 127 0 28 Left-VentralDC 145 42 42 0 29 Left-undetermined 135 206 235 0 30 Left-vessel 160 32 240 0 31 Left-choroid-plexus 0 200 200 0 32 Left-F3orb 100 50 100 0 33 Left-aOg 122 135 50 0 34 Left-WMCrowns 225 225 255 0 35 Left-mOg 51 50 135 0 36 Left-pOg 74 155 60 0 37 Left-Stellate 120 62 43 0 38 Left-Porg 74 155 60 0 39 Left-Aorg 122 135 50 0 40 Right-Cerebral-Exterior 70 130 180 0 41 Right-Cerebral-White-Matter 245 245 245 0 42 Right-Cerebral-Cortex 205 62 78 0 43 Right-Lateral-Ventricle 120 18 134 0 44 Right-Inf-Lat-Vent 196 58 250 0 45 Right-Cerebellum-Exterior 0 148 0 0 46 Right-Cerebellum-White-Matter 220 248 164 0 47 Right-Cerebellum-Cortex 230 148 34 0 48 Right-Thalamus-unused 0 118 14 0 49 Right-Thalamus 0 118 14 0 50 Right-Caudate 122 186 220 0 51 Right-Putamen 236 13 176 0 52 Right-Pallidum 13 48 255 0 53 Right-Hippocampus 220 216 20 0 54 Right-Amygdala 103 255 255 0 55 Right-Insula 80 196 98 0 56 Right-Operculum 60 58 210 0 57 Right-Lesion 255 165 0 0 58 Right-Accumbens-area 255 165 0 0 59 Right-Substancia-Nigra 0 255 127 0 60 Right-VentralDC 165 42 42 0 61 Right-undetermined 135 206 235 0 62 Right-vessel 160 32 240 0 63 Right-choroid-plexus 0 200 221 0 64 Right-F3orb 100 50 100 0 65 Right-lOg 135 50 74 0 66 Right-WMCrowns 215 215 255 0 67 Right-mOg 51 50 135 0 68 Right-pOg 74 155 60 0 69 Right-Stellate 120 62 43 0 70 Right-Porg 74 155 60 0 71 Right-Aorg 122 135 50 0 72 5th-Ventricle 120 190 150 0 73 Left-Interior 122 135 50 0 74 Right-Interior 122 135 50 0 # 75/76 removed. duplicates of 4/43 # new 75/76 added 75 Left-Locus-Coeruleus 91 97 255 0 76 Right-Locus-Coeruleus 0 7 218 0 77 WM-hypointensities 200 70 255 0 78 Left-WM-hypointensities 255 148 10 0 79 Right-WM-hypointensities 255 148 10 0 80 non-WM-hypointensities 164 108 226 0 81 Left-non-WM-hypointensities 164 108 226 0 82 Right-non-WM-hypointensities 164 108 226 0 83 Left-F1 255 218 185 0 84 Right-F1 255 218 185 0 85 Optic-Chiasm 234 169 30 0 192 Corpus_Callosum 170 255 255 0 86 Left_future_WMSA 200 120 255 0 87 Right_future_WMSA 200 121 255 0 88 future_WMSA 200 122 255 0 96 Left-Amygdala-Anterior 205 10 125 0 97 Right-Amygdala-Anterior 205 10 125 0 98 Dura 160 32 240 0 99 Lesion 255 165 0 0 100 Left-wm-intensity-abnormality 124 140 178 0 101 Left-caudate-intensity-abnormality 125 140 178 0 102 Left-putamen-intensity-abnormality 126 140 178 0 103 Left-accumbens-intensity-abnormality 127 140 178 0 104 Left-pallidum-intensity-abnormality 124 141 178 0 105 Left-amygdala-intensity-abnormality 124 142 178 0 106 Left-hippocampus-intensity-abnormality 124 143 178 0 107 Left-thalamus-intensity-abnormality 124 144 178 0 108 Left-VDC-intensity-abnormality 124 140 179 0 109 Right-wm-intensity-abnormality 124 140 178 0 110 Right-caudate-intensity-abnormality 125 140 178 0 111 Right-putamen-intensity-abnormality 126 140 178 0 112 Right-accumbens-intensity-abnormality 127 140 178 0 113 Right-pallidum-intensity-abnormality 124 141 178 0 114 Right-amygdala-intensity-abnormality 124 142 178 0 115 Right-hippocampus-intensity-abnormality 124 143 178 0 116 Right-thalamus-intensity-abnormality 124 144 178 0 117 Right-VDC-intensity-abnormality 124 140 179 0 118 Epidermis 255 20 147 0 119 Conn-Tissue 205 179 139 0 120 SC-Fat-Muscle 238 238 209 0 121 Cranium 200 200 200 0 122 CSF-SA 74 255 74 0 123 Muscle 238 0 0 0 124 Ear 0 0 139 0 125 Adipose 173 255 47 0 126 Spinal-Cord 133 203 229 0 127 Soft-Tissue 26 237 57 0 128 Nerve 34 139 34 0 129 Bone 30 144 255 0 130 AirCavity 196 160 128 0 131 Orbital-Fat 238 59 59 0 132 Tongue 221 39 200 0 133 Nasal-Structures 238 174 238 0 134 Globe 255 0 0 0 135 Teeth 72 61 139 0 136 Left-Caudate-Putamen 21 39 132 0 137 Right-Caudate-Putamen 21 39 132 0 138 Left-Claustrum 65 135 20 0 139 Right-Claustrum 65 135 20 0 140 Cornea 134 4 160 0 142 Diploe 221 226 68 0 143 Vitreous-Humor 255 255 254 0 144 Lens 52 209 226 0 145 Aqueous-Humor 239 160 223 0 146 Outer-Table 70 130 180 0 147 Inner-Table 70 130 181 0 148 Periosteum 139 121 94 0 149 Endosteum 224 224 224 0 150 R-C-S 255 0 0 0 151 Iris 205 205 0 0 152 SC-Adipose-Muscle 238 238 209 0 153 SC-Tissue 139 121 94 0 154 Orbital-Adipose 238 59 59 0 155 Left-IntCapsule-Ant 238 59 59 0 156 Right-IntCapsule-Ant 238 59 59 0 157 Left-IntCapsule-Pos 62 10 205 0 158 Right-IntCapsule-Pos 62 10 205 0 # These labels are for babies/children 159 Left-Cerebral-WM-unmyelinated 0 118 14 0 160 Right-Cerebral-WM-unmyelinated 0 118 14 0 161 Left-Cerebral-WM-myelinated 220 216 21 0 162 Right-Cerebral-WM-myelinated 220 216 21 0 163 Left-Subcortical-Gray-Matter 122 186 220 0 164 Right-Subcortical-Gray-Matter 122 186 220 0 165 Skull 120 120 120 0 166 Posterior-fossa 14 48 255 0 167 Scalp 166 42 42 0 168 Hematoma 121 18 134 0 169 Left-Basal-Ganglia 236 13 127 0 176 Right-Basal-Ganglia 236 13 126 0 # Label names and colors for Brainstem constituents # No. Label Name: R G B A 170 brainstem 119 159 176 0 171 DCG 119 0 176 0 172 Vermis 119 100 176 0 173 Midbrain 242 104 76 0 174 Pons 206 195 58 0 175 Medulla 119 159 176 0 177 Vermis-White-Matter 119 50 176 0 178 SCP 142 182 0 0 179 Floculus 19 100 176 0 #176 Right-Basal-Ganglia found in babies/children section above 180 Left-Cortical-Dysplasia 73 61 139 0 181 Right-Cortical-Dysplasia 73 62 139 0 182 CblumNodulus 10 100 176 0 # Changed name to "Area" to indicate that this is not # currently a fully vetted segmentation 183 Left-Vermis-Area 119 100 176 0 184 Right-Vermis-Area 100 119 176 0 #192 Corpus_Callosum listed after #85 above 193 Left-hippocampal_fissure 0 196 255 0 194 Left-CADG-head 255 164 164 0 195 Left-subiculum 196 196 0 0 196 Left-fimbria 0 100 255 0 197 Right-hippocampal_fissure 128 196 164 0 198 Right-CADG-head 0 126 75 0 199 Right-subiculum 128 96 64 0 200 Right-fimbria 0 50 128 0 201 alveus 255 204 153 0 202 perforant_pathway 255 128 128 0 203 parasubiculum 175 175 75 0 204 presubiculum 64 0 64 0 205 subiculum 0 0 255 0 206 CA1 255 0 0 0 207 CA2 128 128 255 0 208 CA3 0 128 0 0 209 CA4 196 160 128 0 210 GC-DG 32 200 255 0 211 HATA 128 255 128 0 212 fimbria 204 153 204 0 213 lateral_ventricle 121 17 136 0 214 molecular_layer_HP 128 0 0 0 215 hippocampal_fissure 128 32 255 0 216 entorhinal_cortex 255 204 102 0 217 molecular_layer_subiculum 128 128 128 0 218 Amygdala 104 255 255 0 219 Cerebral_White_Matter 0 226 0 0 220 Cerebral_Cortex 205 63 78 0 221 Inf_Lat_Vent 197 58 250 0 222 Perirhinal 33 150 250 0 223 Cerebral_White_Matter_Edge 226 0 0 0 224 Background 100 100 100 0 225 Ectorhinal 197 150 250 0 226 HP_tail 170 170 255 0 227 Polymorphic-Layer 128 255 128 0 228 Intracellular-Space 204 153 204 0 229 molecular_layer_DG 168 0 0 0 230 Prosubiculum 252 132 8 0 231 HP_body 0 255 0 0 232 HP_head 255 0 0 0 233 presubiculum-head 32 0 32 0 234 presubiculum-body 64 0 64 0 235 subiculum-head 0 0 175 0 236 subiculum-body 0 0 255 0 237 CA1-head 175 75 75 0 238 CA1-body 255 0 0 0 239 CA3-head 0 80 0 0 240 CA3-body 0 128 0 0 241 CA4-head 120 90 50 0 242 CA4-body 196 160 128 0 243 GC-ML-DG-head 75 125 175 0 244 GC-ML-DG-body 32 200 255 0 245 molecular_layer_HP-head 100 25 25 0 246 molecular_layer_HP-body 128 0 0 0 247 FreezeSurface 10 100 100 0 248 Gyrus_Fasciolaris 0 93 0 0 249 Fasciola_Cinerea 80 255 235 0 250 Fornix 255 42 250 0 251 CC_Posterior 0 0 64 0 252 CC_Mid_Posterior 0 0 112 0 253 CC_Central 0 0 160 0 254 CC_Mid_Anterior 0 0 208 0 255 CC_Anterior 0 0 255 0 # This is for keeping track of voxel changes 256 Voxel-Unchanged 0 0 0 0 257 CSF-ExtraCerebral 60 60 60 0 258 Head-ExtraCerebral 150 150 200 0 259 Eye-Fluid 60 60 60 0 260 BoneOrAir 119 159 176 0 261 PossibleFluid 120 18 134 0 262 Sinus 85 85 127 0 263 Left-Eustachian 119 159 176 0 264 Right-Eustachian 119 159 176 0 265 Left-Eyeball 60 60 60 0 266 Right-Eyeball 60 60 60 0 267 Pons-Belly-Area 206 195 58 0 270 ctx-lh-infragranular 205 70 78 0 271 ctx-lh-layer1 210 80 78 0 272 ctx-lh-layer2 215 90 78 0 273 ctx-lh-layer3 220 100 78 0 274 ctx-lh-layer4 225 110 78 0 275 ctx-lh-layer5 230 120 78 0 276 ctx-lh-layer6 235 135 78 0 277 ctx-lh-supragranular 240 140 78 0 278 SubiculumU 20 119 165 0 279 CA1U 255 108 108 0 280 CA2U 167 130 199 0 281 CA3U 0 202 0 0 282 HP_tail_LH 136 112 255 0 283 HP_tail_RH 136 112 255 0 # lymph node and vascular labels 331 Aorta 255 0 0 0 332 Left-Common-IliacA 255 80 0 0 333 Right-Common-IliacA 255 160 0 0 334 Left-External-IliacA 255 255 0 0 335 Right-External-IliacA 0 255 0 0 336 Left-Internal-IliacA 255 0 160 0 337 Right-Internal-IliacA 255 0 255 0 338 Left-Lateral-SacralA 255 50 80 0 339 Right-Lateral-SacralA 80 255 50 0 340 Left-ObturatorA 160 255 50 0 341 Right-ObturatorA 160 200 255 0 342 Left-Internal-PudendalA 0 255 160 0 343 Right-Internal-PudendalA 0 0 255 0 344 Left-UmbilicalA 80 50 255 0 345 Right-UmbilicalA 160 0 255 0 346 Left-Inf-RectalA 255 210 0 0 347 Right-Inf-RectalA 0 160 255 0 348 Left-Common-IliacV 255 200 80 0 349 Right-Common-IliacV 255 200 160 0 350 Left-External-IliacV 255 80 200 0 351 Right-External-IliacV 255 160 200 0 352 Left-Internal-IliacV 30 255 80 0 353 Right-Internal-IliacV 80 200 255 0 354 Left-ObturatorV 80 255 200 0 355 Right-ObturatorV 195 255 200 0 356 Left-Internal-PudendalV 120 200 20 0 357 Right-Internal-PudendalV 170 10 200 0 358 Pos-Lymph 20 130 180 0 359 Neg-Lymph 20 180 130 0 370 ctx-rh-infragranular 205 70 130 0 371 ctx-rh-layer1 210 80 130 0 372 ctx-rh-layer2 215 90 130 0 373 ctx-rh-layer3 220 100 130 0 374 ctx-rh-layer4 225 110 130 0 375 ctx-rh-layer5 230 120 130 0 376 ctx-rh-layer6 235 135 130 0 377 ctx-rh-supragranular 240 140 130 0 400 V1 206 62 78 0 401 V2 121 18 134 0 402 BA44 199 58 250 0 403 BA45 1 148 0 0 404 BA4a 221 248 164 0 405 BA4p 231 148 34 0 406 BA6 1 118 14 0 407 BA2 120 118 14 0 408 BA1_old 123 186 221 0 409 BAun2 238 13 177 0 410 BA1 123 186 220 0 411 BA2b 138 13 206 0 412 BA3a 238 130 176 0 413 BA3b 218 230 76 0 414 MT 38 213 176 0 415 AIPS_AIP_l 1 225 176 0 416 AIPS_AIP_r 1 225 176 0 417 AIPS_VIP_l 200 2 100 0 418 AIPS_VIP_r 200 2 100 0 419 IPL_PFcm_l 5 200 90 0 420 IPL_PFcm_r 5 200 90 0 421 IPL_PF_l 100 5 200 0 422 IPL_PFm_l 25 255 100 0 423 IPL_PFm_r 25 255 100 0 424 IPL_PFop_l 230 7 100 0 425 IPL_PFop_r 230 7 100 0 426 IPL_PF_r 100 5 200 0 427 IPL_PFt_l 150 10 200 0 428 IPL_PFt_r 150 10 200 0 429 IPL_PGa_l 175 10 176 0 430 IPL_PGa_r 175 10 176 0 431 IPL_PGp_l 10 100 255 0 432 IPL_PGp_r 10 100 255 0 433 Visual_V3d_l 150 45 70 0 434 Visual_V3d_r 150 45 70 0 435 Visual_V4_l 45 200 15 0 436 Visual_V4_r 45 200 15 0 437 Visual_V5_b 227 45 100 0 438 Visual_VP_l 227 45 100 0 439 Visual_VP_r 227 45 100 0 # wm lesions 498 wmsa 143 188 143 0 499 other_wmsa 255 248 220 0 # HiRes Hippocampus labeling 500 right_CA2_3 17 85 136 0 501 right_alveus 119 187 102 0 502 right_CA1 204 68 34 0 503 right_fimbria 204 0 255 0 504 right_presubiculum 221 187 17 0 505 right_hippocampal_fissure 153 221 238 0 506 right_CA4_DG 51 17 17 0 507 right_subiculum 0 119 85 0 508 right_fornix 20 100 200 0 550 left_CA2_3 17 85 137 0 551 left_alveus 119 187 103 0 552 left_CA1 204 68 35 0 553 left_fimbria 204 0 254 0 554 left_presubiculum 221 187 16 0 555 left_hippocampal_fissure 153 221 239 0 556 left_CA4_DG 51 17 18 0 557 left_subiculum 0 119 86 0 558 left_fornix 20 100 201 0 559 Subcortical-Gray-Matter 123 187 221 0 600 Tumor 254 254 254 0 # Cerebellar parcellation labels from SUIT (matches labels in cma.h), # FastSurfer-CerebNet builds on top of these SUITS labels and expands them two aggregated labels (see below) # See https://doi.org/10.1016/j.neuroimage.2022.119703 #No. Label Name: R G B A 601 Cbm_Left_I_IV 0 69 190 0 602 Cbm_Right_I_IV 70 170 180 0 603 Cbm_Left_V 205 62 78 0 604 Cbm_Right_V 205 102 78 0 605 Cbm_Left_VI 196 58 250 0 606 Cbm_Vermis_VI 0 148 0 0 607 Cbm_Right_VI 196 98 250 0 608 Cbm_Left_CrusI 230 148 34 0 609 Cbm_Vermis_CrusI 0 118 14 0 610 Cbm_Right_CrusI 230 188 34 0 611 Cbm_Left_CrusII 122 200 120 0 612 Cbm_Vermis_CrusII 236 13 176 0 613 Cbm_Right_CrusII 122 240 120 0 614 Cbm_Left_VIIb 0 149 208 0 615 Cbm_Vermis_VIIb 42 204 164 0 616 Cbm_Right_VIIb 0 189 208 0 617 Cbm_Left_VIIIa 220 205 20 0 618 Cbm_Vermis_VIIIa 103 255 255 0 619 Cbm_Right_VIIIa 220 245 20 0 620 Cbm_Left_VIIIb 60 58 210 0 621 Cbm_Vermis_VIIIb 60 58 210 0 622 Cbm_Right_VIIIb 60 98 210 0 623 Cbm_Left_IX 90 135 35 0 624 Cbm_Vermis_IX 225 60 160 0 625 Cbm_Right_IX 158 233 19 0 626 Cbm_Left_X 165 42 42 0 627 Cbm_Vermis_X 0 255 127 0 628 Cbm_Right_X 165 82 42 0 # Cerebellar aggregated labels extended for FastSurfer-CerebNet # See https://doi.org/10.1016/j.neuroimage.2022.119703 630 Cbm_Vermis_VII 230 73 25 0 631 Cbm_Vermis_VIII 103 255 255 0 632 Cbm_Vermis 230 73 25 0 # Cerebellar lobule parcellations 640 Cbm_Right_I_V_med 204 0 0 0 641 Cbm_Right_I_V_mid 255 0 0 0 642 Cbm_Right_VI_med 0 0 255 0 643 Cbm_Right_VI_mid 30 144 255 0 644 Cbm_Right_VI_lat 100 212 237 0 645 Cbm_Right_CrusI_med 218 165 32 0 646 Cbm_Right_CrusI_mid 255 215 0 0 647 Cbm_Right_CrusI_lat 255 255 166 0 648 Cbm_Right_CrusII_med 153 0 204 0 649 Cbm_Right_CrusII_mid 153 141 209 0 650 Cbm_Right_CrusII_lat 204 204 255 0 651 Cbm_Right_7med 31 212 194 0 652 Cbm_Right_7mid 3 255 237 0 653 Cbm_Right_7lat 204 255 255 0 654 Cbm_Right_8med 86 74 147 0 655 Cbm_Right_8mid 114 114 190 0 656 Cbm_Right_8lat 184 178 255 0 657 Cbm_Right_PUNs 126 138 37 0 658 Cbm_Right_TONs 189 197 117 0 659 Cbm_Right_FLOs 240 230 140 0 660 Cbm_Left_I_V_med 204 0 0 0 661 Cbm_Left_I_V_mid 255 0 0 0 662 Cbm_Left_VI_med 0 0 255 0 663 Cbm_Left_VI_mid 30 144 255 0 664 Cbm_Left_VI_lat 100 212 237 0 665 Cbm_Left_CrusI_med 218 165 32 0 666 Cbm_Left_CrusI_mid 255 215 0 0 667 Cbm_Left_CrusI_lat 255 255 166 0 668 Cbm_Left_CrusII_med 153 0 204 0 669 Cbm_Left_CrusII_mid 153 141 209 0 670 Cbm_Left_CrusII_lat 204 204 255 0 671 Cbm_Left_7med 31 212 194 0 672 Cbm_Left_7mid 3 255 237 0 673 Cbm_Left_7lat 204 255 255 0 674 Cbm_Left_8med 86 74 147 0 675 Cbm_Left_8mid 114 114 190 0 676 Cbm_Left_8lat 184 178 255 0 677 Cbm_Left_PUNs 126 138 37 0 678 Cbm_Left_TONs 189 197 117 0 679 Cbm_Left_FLOs 240 230 140 0 # Added by DNG 7/31/14 690 CbmWM_Gyri_Left 122 135 50 0 691 CbmWM_Gyri_Right 122 135 50 0 701 CSF-FSL-FAST 120 18 134 0 702 GrayMatter-FSL-FAST 205 62 78 0 703 WhiteMatter-FSL-FAST 0 225 0 0 801 L_hypothalamus_anterior_inferior 250 255 50 0 802 L_hypothalamus_anterior_superior 80 200 255 0 803 L_hypothalamus_posterior 255 160 0 0 804 L_hypothalamus_tubular_inferior 255 160 200 0 805 L_hypothalamus_tubular_superior 20 180 130 0 806 R_hypothalamus_anterior_inferior 250 255 50 0 807 R_hypothalamus_anterior_superior 80 200 255 0 808 R_hypothalamus_posterior 255 160 0 0 809 R_hypothalamus_tubular_inferior 255 160 200 0 810 R_hypothalamus_tubular_superior 20 180 130 0 # sclimbic 819 Left-HypoThal-noMB 0 80 0 0 820 Right-HypoThal-noMB 15 165 15 0 821 Left-Fornix 0 255 255 0 822 Right-Fornix 27 187 253 0 843 Left-MammillaryBody 178 255 80 0 844 Right-MammillaryBody 25 246 80 0 853 Mid-AntCom 60 58 210 0 865 Left-Basal-Forebrain 170 85 0 0 866 Right-Basal-Forebrain 139 69 19 0 869 Left-SeptalNuc 255 170 255 0 870 Right-SeptalNuc 191 127 191 0 # PGlands (matches Katie?) 883 Pituitary-Ant 247 40 248 0 900 Pineal 153 0 0 0 903 Pituitary-Post 40 247 248 0 904 PG-Infundibulum 255 128 0 0 # SAMSEG-CHARM + 400 901 Air-Internal 0 170 0 0 902 Artery 204 0 0 255 906 EyeBalls 230 189 66 255 907 Other-Tissues 85 85 0 0 908 Rectus-Muscles 190 50 73 255 909 Mucosa 255 160 188 255 911 Skin 85 85 85 0 912 Charm-Spinal-Cord 0 187 169 255 914 Vein 0 84 255 255 915 Bone-Cortical 0 85 0 0 916 Bone-Cancellous 170 170 0 255 917 Charm-Background 0 168 255 255 920 Cortical-CSF 120 133 217 255 930 Optic-Nerve 0 191 122 255 931 Spinal-CSF 100 113 207 255 # Below is the color table for olfactory bulb structures generated by FastSurfer OB pipeline. # See : https://doi.org/10.1016/j.neuroimage.2021.118464 951 L-olfactory-bulb 0 0 255 0 952 R-olfactory-bulb 255 0 0 0 # Below is the color table for the hypothalamic subregions generated by FastSurfer HypVINN pipeline #See : https://doi.org/10.1162/imag_a_00034 961 R-N.opticus 70 130 180 0 962 L-N.opticus 130 180 70 0 963 R-C.mammilare 205 62 78 0 964 R-Optic-tract 80 120 134 0 965 L-Optic-tract 196 58 250 0 966 L-C.mammilare 0 148 0 0 967 R-Chiasma-Opticum 220 248 164 0 968 L-Chiasma-Opticum 230 148 34 0 969 Ant-Commisure 10 180 225 0 970 Third-Ventricle 118 0 100 0 971 R-Fornix 122 200 120 0 972 L-Fornix 236 13 176 0 973 Epiphysis 204 182 142 0 974 Hypophysis 119 159 176 0 975 Infundibulum 220 216 20 0 976 Tuberal-Region 120 60 110 0 977 L-Med-Hypothalamus 165 255 0 0 978 L-Lat-Hypothalamus 0 255 127 0 979 L-Ant-Hypothalamus 165 42 42 0 980 L-Post-Hypothalamus 255 215 0 0 981 R-Med-Hypothalamus 115 255 0 0 982 R-Lat-Hypothalamus 60 255 127 0 983 R-Ant-Hypothalamus 165 142 42 0 984 R-Post-Hypothalamus 255 170 20 0 999 SUSPICIOUS 255 100 100 0 # Below is the color table for the cortical labels of the seg volume # created by mri_aparc2aseg in which the aseg cortex label is replaced # by the labels in the aparc. It also supports wm labels that will # eventually be created by mri_aparc2aseg. Otherwise, the aseg labels # do not change from above. The cortical labels are the same as in # colortable_desikan_killiany.txt, except that left hemisphere has # 1000 added to the index and the right has 2000 added. The label # names are also prepended with ctx-lh or ctx-rh. The white matter # labels are the same as in colortable_desikan_killiany.txt, except # that left hemisphere has 3000 added to the index and the right has # 4000 added. The label names are also prepended with wm-lh or wm-rh. # Centrum semiovale is also labeled with 5001 (left) and 5002 (right). # Even further below are the color tables for aparc.a2005s and aparc.a2009s. #No. Label Name: R G B A 1000 ctx-lh-unknown 25 5 25 0 1001 ctx-lh-bankssts 25 100 40 0 1002 ctx-lh-caudalanteriorcingulate 125 100 160 0 1003 ctx-lh-caudalmiddlefrontal 100 25 0 0 1004 ctx-lh-corpuscallosum 120 70 50 0 1005 ctx-lh-cuneus 220 20 100 0 1006 ctx-lh-entorhinal 220 20 10 0 1007 ctx-lh-fusiform 180 220 140 0 1008 ctx-lh-inferiorparietal 220 60 220 0 1009 ctx-lh-inferiortemporal 180 40 120 0 1010 ctx-lh-isthmuscingulate 140 20 140 0 1011 ctx-lh-lateraloccipital 20 30 140 0 1012 ctx-lh-lateralorbitofrontal 35 75 50 0 1013 ctx-lh-lingual 225 140 140 0 1014 ctx-lh-medialorbitofrontal 200 35 75 0 1015 ctx-lh-middletemporal 160 100 50 0 1016 ctx-lh-parahippocampal 20 220 60 0 1017 ctx-lh-paracentral 60 220 60 0 1018 ctx-lh-parsopercularis 220 180 140 0 1019 ctx-lh-parsorbitalis 20 100 50 0 1020 ctx-lh-parstriangularis 220 60 20 0 1021 ctx-lh-pericalcarine 120 100 60 0 1022 ctx-lh-postcentral 220 20 20 0 1023 ctx-lh-posteriorcingulate 220 180 220 0 1024 ctx-lh-precentral 60 20 220 0 1025 ctx-lh-precuneus 160 140 180 0 1026 ctx-lh-rostralanteriorcingulate 80 20 140 0 1027 ctx-lh-rostralmiddlefrontal 75 50 125 0 1028 ctx-lh-superiorfrontal 20 220 160 0 1029 ctx-lh-superiorparietal 20 180 140 0 1030 ctx-lh-superiortemporal 140 220 220 0 1031 ctx-lh-supramarginal 80 160 20 0 1032 ctx-lh-frontalpole 100 0 100 0 1033 ctx-lh-temporalpole 70 70 70 0 1034 ctx-lh-transversetemporal 150 150 200 0 1035 ctx-lh-insula 255 192 32 0 2000 ctx-rh-unknown 25 5 25 0 2001 ctx-rh-bankssts 25 100 40 0 2002 ctx-rh-caudalanteriorcingulate 125 100 160 0 2003 ctx-rh-caudalmiddlefrontal 100 25 0 0 2004 ctx-rh-corpuscallosum 120 70 50 0 2005 ctx-rh-cuneus 220 20 100 0 2006 ctx-rh-entorhinal 220 20 10 0 2007 ctx-rh-fusiform 180 220 140 0 2008 ctx-rh-inferiorparietal 220 60 220 0 2009 ctx-rh-inferiortemporal 180 40 120 0 2010 ctx-rh-isthmuscingulate 140 20 140 0 2011 ctx-rh-lateraloccipital 20 30 140 0 2012 ctx-rh-lateralorbitofrontal 35 75 50 0 2013 ctx-rh-lingual 225 140 140 0 2014 ctx-rh-medialorbitofrontal 200 35 75 0 2015 ctx-rh-middletemporal 160 100 50 0 2016 ctx-rh-parahippocampal 20 220 60 0 2017 ctx-rh-paracentral 60 220 60 0 2018 ctx-rh-parsopercularis 220 180 140 0 2019 ctx-rh-parsorbitalis 20 100 50 0 2020 ctx-rh-parstriangularis 220 60 20 0 2021 ctx-rh-pericalcarine 120 100 60 0 2022 ctx-rh-postcentral 220 20 20 0 2023 ctx-rh-posteriorcingulate 220 180 220 0 2024 ctx-rh-precentral 60 20 220 0 2025 ctx-rh-precuneus 160 140 180 0 2026 ctx-rh-rostralanteriorcingulate 80 20 140 0 2027 ctx-rh-rostralmiddlefrontal 75 50 125 0 2028 ctx-rh-superiorfrontal 20 220 160 0 2029 ctx-rh-superiorparietal 20 180 140 0 2030 ctx-rh-superiortemporal 140 220 220 0 2031 ctx-rh-supramarginal 80 160 20 0 2032 ctx-rh-frontalpole 100 0 100 0 2033 ctx-rh-temporalpole 70 70 70 0 2034 ctx-rh-transversetemporal 150 150 200 0 2035 ctx-rh-insula 255 192 32 0 3000 wm-lh-unknown 230 250 230 0 3001 wm-lh-bankssts 230 155 215 0 3002 wm-lh-caudalanteriorcingulate 130 155 95 0 3003 wm-lh-caudalmiddlefrontal 155 230 255 0 3004 wm-lh-corpuscallosum 135 185 205 0 3005 wm-lh-cuneus 35 235 155 0 3006 wm-lh-entorhinal 35 235 245 0 3007 wm-lh-fusiform 75 35 115 0 3008 wm-lh-inferiorparietal 35 195 35 0 3009 wm-lh-inferiortemporal 75 215 135 0 3010 wm-lh-isthmuscingulate 115 235 115 0 3011 wm-lh-lateraloccipital 235 225 115 0 3012 wm-lh-lateralorbitofrontal 220 180 205 0 3013 wm-lh-lingual 30 115 115 0 3014 wm-lh-medialorbitofrontal 55 220 180 0 3015 wm-lh-middletemporal 95 155 205 0 3016 wm-lh-parahippocampal 235 35 195 0 3017 wm-lh-paracentral 195 35 195 0 3018 wm-lh-parsopercularis 35 75 115 0 3019 wm-lh-parsorbitalis 235 155 205 0 3020 wm-lh-parstriangularis 35 195 235 0 3021 wm-lh-pericalcarine 135 155 195 0 3022 wm-lh-postcentral 35 235 235 0 3023 wm-lh-posteriorcingulate 35 75 35 0 3024 wm-lh-precentral 195 235 35 0 3025 wm-lh-precuneus 95 115 75 0 3026 wm-lh-rostralanteriorcingulate 175 235 115 0 3027 wm-lh-rostralmiddlefrontal 180 205 130 0 3028 wm-lh-superiorfrontal 235 35 95 0 3029 wm-lh-superiorparietal 235 75 115 0 3030 wm-lh-superiortemporal 115 35 35 0 3031 wm-lh-supramarginal 175 95 235 0 3032 wm-lh-frontalpole 155 255 155 0 3033 wm-lh-temporalpole 185 185 185 0 3034 wm-lh-transversetemporal 105 105 55 0 3035 wm-lh-insula 20 220 160 0 4000 wm-rh-unknown 230 250 230 0 4001 wm-rh-bankssts 230 155 215 0 4002 wm-rh-caudalanteriorcingulate 130 155 95 0 4003 wm-rh-caudalmiddlefrontal 155 230 255 0 4004 wm-rh-corpuscallosum 135 185 205 0 4005 wm-rh-cuneus 35 235 155 0 4006 wm-rh-entorhinal 35 235 245 0 4007 wm-rh-fusiform 75 35 115 0 4008 wm-rh-inferiorparietal 35 195 35 0 4009 wm-rh-inferiortemporal 75 215 135 0 4010 wm-rh-isthmuscingulate 115 235 115 0 4011 wm-rh-lateraloccipital 235 225 115 0 4012 wm-rh-lateralorbitofrontal 220 180 205 0 4013 wm-rh-lingual 30 115 115 0 4014 wm-rh-medialorbitofrontal 55 220 180 0 4015 wm-rh-middletemporal 95 155 205 0 4016 wm-rh-parahippocampal 235 35 195 0 4017 wm-rh-paracentral 195 35 195 0 4018 wm-rh-parsopercularis 35 75 115 0 4019 wm-rh-parsorbitalis 235 155 205 0 4020 wm-rh-parstriangularis 35 195 235 0 4021 wm-rh-pericalcarine 135 155 195 0 4022 wm-rh-postcentral 35 235 235 0 4023 wm-rh-posteriorcingulate 35 75 35 0 4024 wm-rh-precentral 195 235 35 0 4025 wm-rh-precuneus 95 115 75 0 4026 wm-rh-rostralanteriorcingulate 175 235 115 0 4027 wm-rh-rostralmiddlefrontal 180 205 130 0 4028 wm-rh-superiorfrontal 235 35 95 0 4029 wm-rh-superiorparietal 235 75 115 0 4030 wm-rh-superiortemporal 115 35 35 0 4031 wm-rh-supramarginal 175 95 235 0 4032 wm-rh-frontalpole 155 255 155 0 4033 wm-rh-temporalpole 185 185 185 0 4034 wm-rh-transversetemporal 105 105 55 0 4035 wm-rh-insula 20 220 160 0 # Below is the color table for a lobar parcellation obtained from running: # mri_annotation2label --subject subject --hemi lh --lobesStrict lobes # mri_annotation2label --subject subject --hemi rh --lobesStrict lobes # mri_aparc2aseg --s subject --rip-unknown --volmask \ # --o aparc.lobes.mgz --annot lobes \ # --base-offset 300 [--base-offset must be last arg] 1301 ctx-lh-frontal-lobe 25 100 40 0 1303 ctx-lh-cingulate-lobe 100 25 0 0 1304 ctx-lh-occipital-lobe 120 70 50 0 1305 ctx-lh-temporal-lobe 220 20 100 0 1306 ctx-lh-parietal-lobe 220 20 10 0 1307 ctx-lh-insula-lobe 255 192 32 0 2301 ctx-rh-frontal-lobe 25 100 40 0 2303 ctx-rh-cingulate-lobe 100 25 0 0 2304 ctx-rh-occipital-lobe 120 70 50 0 2305 ctx-rh-temporal-lobe 220 20 100 0 2306 ctx-rh-parietal-lobe 220 20 10 0 2307 ctx-rh-insula-lobe 255 192 32 0 # Below is the color table for a lobar white matter parcellation # obtained from running: # mri_annotation2label --subject subject --hemi lh --lobesStrict lobes # mri_annotation2label --subject subject --hemi rh --lobesStrict lobes # mri_aparc2aseg --s subject --labelwm --hypo-as-wm --rip-unknown \ # --volmask --o wmparc.lobes.mgz --ctxseg aparc+aseg.mgz \ # --annot lobes --base-offset 200 [--base-offset must be last arg] 3201 wm-lh-frontal-lobe 235 35 95 0 3203 wm-lh-cingulate-lobe 35 75 35 0 3204 wm-lh-occipital-lobe 135 155 195 0 3205 wm-lh-temporal-lobe 115 35 35 0 3206 wm-lh-parietal-lobe 35 195 35 0 3207 wm-lh-insula-lobe 20 220 160 0 4201 wm-rh-frontal-lobe 235 35 95 0 4203 wm-rh-cingulate-lobe 35 75 35 0 4204 wm-rh-occipital-lobe 135 155 195 0 4205 wm-rh-temporal-lobe 115 35 35 0 4206 wm-rh-parietal-lobe 35 195 35 0 4207 wm-rh-insula-lobe 20 220 160 0 # From Jean A 5024 Low_TDP-43_Pathology_Density 170 238 44 0 5025 Moderate_TDP-43_Pathology_Density 240 168 105 0 5026 High_TDP-43_Pathology_Density 182 79 89 0 5027 Severe_TDP-43_Pathology_Density 156 15 35 0 # Below is the color table for the cortical labels of the seg volume # created by mri_aparc2aseg (with --a2005s flag) in which the aseg # cortex label is replaced by the labels in the aparc.a2005s. The # cortical labels are the same as in Simple_surface_labels2005.txt, # except that left hemisphere has 1100 added to the index and the # right has 2100 added. The label names are also prepended with # ctx-lh or ctx-rh. The aparc.a2009s labels are further below #No. Label Name: R G B A 1100 ctx-lh-Unknown 0 0 0 0 1101 ctx-lh-Corpus_callosum 50 50 50 0 1102 ctx-lh-G_and_S_Insula_ONLY_AVERAGE 180 20 30 0 1103 ctx-lh-G_cingulate-Isthmus 60 25 25 0 1104 ctx-lh-G_cingulate-Main_part 25 60 60 0 1200 ctx-lh-G_cingulate-caudal_ACC 25 60 61 0 1201 ctx-lh-G_cingulate-rostral_ACC 25 90 60 0 1202 ctx-lh-G_cingulate-posterior 25 120 60 0 1205 ctx-lh-S_cingulate-caudal_ACC 25 150 60 0 1206 ctx-lh-S_cingulate-rostral_ACC 25 180 60 0 1207 ctx-lh-S_cingulate-posterior 25 210 60 0 1210 ctx-lh-S_pericallosal-caudal 25 150 90 0 1211 ctx-lh-S_pericallosal-rostral 25 180 90 0 1212 ctx-lh-S_pericallosal-posterior 25 210 90 0 1105 ctx-lh-G_cuneus 180 20 20 0 1106 ctx-lh-G_frontal_inf-Opercular_part 220 20 100 0 1107 ctx-lh-G_frontal_inf-Orbital_part 140 60 60 0 1108 ctx-lh-G_frontal_inf-Triangular_part 180 220 140 0 1109 ctx-lh-G_frontal_middle 140 100 180 0 1110 ctx-lh-G_frontal_superior 180 20 140 0 1111 ctx-lh-G_frontomarginal 140 20 140 0 1112 ctx-lh-G_insular_long 21 10 10 0 1113 ctx-lh-G_insular_short 225 140 140 0 1114 ctx-lh-G_and_S_occipital_inferior 23 60 180 0 1115 ctx-lh-G_occipital_middle 180 60 180 0 1116 ctx-lh-G_occipital_superior 20 220 60 0 1117 ctx-lh-G_occipit-temp_lat-Or_fusiform 60 20 140 0 1118 ctx-lh-G_occipit-temp_med-Lingual_part 220 180 140 0 1119 ctx-lh-G_occipit-temp_med-Parahippocampal_part 65 100 20 0 1120 ctx-lh-G_orbital 220 60 20 0 1121 ctx-lh-G_paracentral 60 100 60 0 1122 ctx-lh-G_parietal_inferior-Angular_part 20 60 220 0 1123 ctx-lh-G_parietal_inferior-Supramarginal_part 100 100 60 0 1124 ctx-lh-G_parietal_superior 220 180 220 0 1125 ctx-lh-G_postcentral 20 180 140 0 1126 ctx-lh-G_precentral 60 140 180 0 1127 ctx-lh-G_precuneus 25 20 140 0 1128 ctx-lh-G_rectus 20 60 100 0 1129 ctx-lh-G_subcallosal 60 220 20 0 1130 ctx-lh-G_subcentral 60 20 220 0 1131 ctx-lh-G_temporal_inferior 220 220 100 0 1132 ctx-lh-G_temporal_middle 180 60 60 0 1133 ctx-lh-G_temp_sup-G_temp_transv_and_interm_S 60 60 220 0 1134 ctx-lh-G_temp_sup-Lateral_aspect 220 60 220 0 1135 ctx-lh-G_temp_sup-Planum_polare 65 220 60 0 1136 ctx-lh-G_temp_sup-Planum_tempolare 25 140 20 0 1137 ctx-lh-G_and_S_transverse_frontopolar 13 0 250 0 1138 ctx-lh-Lat_Fissure-ant_sgt-ramus_horizontal 61 20 220 0 1139 ctx-lh-Lat_Fissure-ant_sgt-ramus_vertical 61 20 60 0 1140 ctx-lh-Lat_Fissure-post_sgt 61 60 100 0 1141 ctx-lh-Medial_wall 25 25 25 0 1142 ctx-lh-Pole_occipital 140 20 60 0 1143 ctx-lh-Pole_temporal 220 180 20 0 1144 ctx-lh-S_calcarine 63 180 180 0 1145 ctx-lh-S_central 221 20 10 0 1146 ctx-lh-S_central_insula 21 220 20 0 1147 ctx-lh-S_cingulate-Main_part_and_Intracingulate 183 100 20 0 1148 ctx-lh-S_cingulate-Marginalis_part 221 20 100 0 1149 ctx-lh-S_circular_insula_anterior 221 60 140 0 1150 ctx-lh-S_circular_insula_inferior 221 20 220 0 1151 ctx-lh-S_circular_insula_superior 61 220 220 0 1152 ctx-lh-S_collateral_transverse_ant 100 200 200 0 1153 ctx-lh-S_collateral_transverse_post 10 200 200 0 1154 ctx-lh-S_frontal_inferior 221 220 20 0 1155 ctx-lh-S_frontal_middle 141 20 100 0 1156 ctx-lh-S_frontal_superior 61 220 100 0 1157 ctx-lh-S_frontomarginal 21 220 60 0 1158 ctx-lh-S_intermedius_primus-Jensen 141 60 20 0 1159 ctx-lh-S_intraparietal-and_Parietal_transverse 143 20 220 0 1160 ctx-lh-S_occipital_anterior 61 20 180 0 1161 ctx-lh-S_occipital_middle_and_Lunatus 101 60 220 0 1162 ctx-lh-S_occipital_superior_and_transversalis 21 20 140 0 1163 ctx-lh-S_occipito-temporal_lateral 221 140 20 0 1164 ctx-lh-S_occipito-temporal_medial_and_S_Lingual 141 100 220 0 1165 ctx-lh-S_orbital-H_shapped 101 20 20 0 1166 ctx-lh-S_orbital_lateral 221 100 20 0 1167 ctx-lh-S_orbital_medial-Or_olfactory 181 200 20 0 1168 ctx-lh-S_paracentral 21 180 140 0 1169 ctx-lh-S_parieto_occipital 101 100 180 0 1170 ctx-lh-S_pericallosal 181 220 20 0 1171 ctx-lh-S_postcentral 21 140 200 0 1172 ctx-lh-S_precentral-Inferior-part 21 20 240 0 1173 ctx-lh-S_precentral-Superior-part 21 20 200 0 1174 ctx-lh-S_subcentral_ant 61 180 60 0 1175 ctx-lh-S_subcentral_post 61 180 250 0 1176 ctx-lh-S_suborbital 21 20 60 0 1177 ctx-lh-S_subparietal 101 60 60 0 1178 ctx-lh-S_supracingulate 21 220 220 0 1179 ctx-lh-S_temporal_inferior 21 180 180 0 1180 ctx-lh-S_temporal_superior 223 220 60 0 1181 ctx-lh-S_temporal_transverse 221 60 60 0 2100 ctx-rh-Unknown 0 0 0 0 2101 ctx-rh-Corpus_callosum 50 50 50 0 2102 ctx-rh-G_and_S_Insula_ONLY_AVERAGE 180 20 30 0 2103 ctx-rh-G_cingulate-Isthmus 60 25 25 0 2104 ctx-rh-G_cingulate-Main_part 25 60 60 0 2105 ctx-rh-G_cuneus 180 20 20 0 2106 ctx-rh-G_frontal_inf-Opercular_part 220 20 100 0 2107 ctx-rh-G_frontal_inf-Orbital_part 140 60 60 0 2108 ctx-rh-G_frontal_inf-Triangular_part 180 220 140 0 2109 ctx-rh-G_frontal_middle 140 100 180 0 2110 ctx-rh-G_frontal_superior 180 20 140 0 2111 ctx-rh-G_frontomarginal 140 20 140 0 2112 ctx-rh-G_insular_long 21 10 10 0 2113 ctx-rh-G_insular_short 225 140 140 0 2114 ctx-rh-G_and_S_occipital_inferior 23 60 180 0 2115 ctx-rh-G_occipital_middle 180 60 180 0 2116 ctx-rh-G_occipital_superior 20 220 60 0 2117 ctx-rh-G_occipit-temp_lat-Or_fusiform 60 20 140 0 2118 ctx-rh-G_occipit-temp_med-Lingual_part 220 180 140 0 2119 ctx-rh-G_occipit-temp_med-Parahippocampal_part 65 100 20 0 2120 ctx-rh-G_orbital 220 60 20 0 2121 ctx-rh-G_paracentral 60 100 60 0 2122 ctx-rh-G_parietal_inferior-Angular_part 20 60 220 0 2123 ctx-rh-G_parietal_inferior-Supramarginal_part 100 100 60 0 2124 ctx-rh-G_parietal_superior 220 180 220 0 2125 ctx-rh-G_postcentral 20 180 140 0 2126 ctx-rh-G_precentral 60 140 180 0 2127 ctx-rh-G_precuneus 25 20 140 0 2128 ctx-rh-G_rectus 20 60 100 0 2129 ctx-rh-G_subcallosal 60 220 20 0 2130 ctx-rh-G_subcentral 60 20 220 0 2131 ctx-rh-G_temporal_inferior 220 220 100 0 2132 ctx-rh-G_temporal_middle 180 60 60 0 2133 ctx-rh-G_temp_sup-G_temp_transv_and_interm_S 60 60 220 0 2134 ctx-rh-G_temp_sup-Lateral_aspect 220 60 220 0 2135 ctx-rh-G_temp_sup-Planum_polare 65 220 60 0 2136 ctx-rh-G_temp_sup-Planum_tempolare 25 140 20 0 2137 ctx-rh-G_and_S_transverse_frontopolar 13 0 250 0 2138 ctx-rh-Lat_Fissure-ant_sgt-ramus_horizontal 61 20 220 0 2139 ctx-rh-Lat_Fissure-ant_sgt-ramus_vertical 61 20 60 0 2140 ctx-rh-Lat_Fissure-post_sgt 61 60 100 0 2141 ctx-rh-Medial_wall 25 25 25 0 2142 ctx-rh-Pole_occipital 140 20 60 0 2143 ctx-rh-Pole_temporal 220 180 20 0 2144 ctx-rh-S_calcarine 63 180 180 0 2145 ctx-rh-S_central 221 20 10 0 2146 ctx-rh-S_central_insula 21 220 20 0 2147 ctx-rh-S_cingulate-Main_part_and_Intracingulate 183 100 20 0 2148 ctx-rh-S_cingulate-Marginalis_part 221 20 100 0 2149 ctx-rh-S_circular_insula_anterior 221 60 140 0 2150 ctx-rh-S_circular_insula_inferior 221 20 220 0 2151 ctx-rh-S_circular_insula_superior 61 220 220 0 2152 ctx-rh-S_collateral_transverse_ant 100 200 200 0 2153 ctx-rh-S_collateral_transverse_post 10 200 200 0 2154 ctx-rh-S_frontal_inferior 221 220 20 0 2155 ctx-rh-S_frontal_middle 141 20 100 0 2156 ctx-rh-S_frontal_superior 61 220 100 0 2157 ctx-rh-S_frontomarginal 21 220 60 0 2158 ctx-rh-S_intermedius_primus-Jensen 141 60 20 0 2159 ctx-rh-S_intraparietal-and_Parietal_transverse 143 20 220 0 2160 ctx-rh-S_occipital_anterior 61 20 180 0 2161 ctx-rh-S_occipital_middle_and_Lunatus 101 60 220 0 2162 ctx-rh-S_occipital_superior_and_transversalis 21 20 140 0 2163 ctx-rh-S_occipito-temporal_lateral 221 140 20 0 2164 ctx-rh-S_occipito-temporal_medial_and_S_Lingual 141 100 220 0 2165 ctx-rh-S_orbital-H_shapped 101 20 20 0 2166 ctx-rh-S_orbital_lateral 221 100 20 0 2167 ctx-rh-S_orbital_medial-Or_olfactory 181 200 20 0 2168 ctx-rh-S_paracentral 21 180 140 0 2169 ctx-rh-S_parieto_occipital 101 100 180 0 2170 ctx-rh-S_pericallosal 181 220 20 0 2171 ctx-rh-S_postcentral 21 140 200 0 2172 ctx-rh-S_precentral-Inferior-part 21 20 240 0 2173 ctx-rh-S_precentral-Superior-part 21 20 200 0 2174 ctx-rh-S_subcentral_ant 61 180 60 0 2175 ctx-rh-S_subcentral_post 61 180 250 0 2176 ctx-rh-S_suborbital 21 20 60 0 2177 ctx-rh-S_subparietal 101 60 60 0 2178 ctx-rh-S_supracingulate 21 220 220 0 2179 ctx-rh-S_temporal_inferior 21 180 180 0 2180 ctx-rh-S_temporal_superior 223 220 60 0 2181 ctx-rh-S_temporal_transverse 221 60 60 0 2200 ctx-rh-G_cingulate-caudal_ACC 25 60 61 0 2201 ctx-rh-G_cingulate-rostral_ACC 25 90 60 0 2202 ctx-rh-G_cingulate-posterior 25 120 60 0 2205 ctx-rh-S_cingulate-caudal_ACC 25 150 60 0 2206 ctx-rh-S_cingulate-rostral_ACC 25 180 60 0 2207 ctx-rh-S_cingulate-posterior 25 210 60 0 2210 ctx-rh-S_pericallosal-caudal 25 150 90 0 2211 ctx-rh-S_pericallosal-rostral 25 180 90 0 2212 ctx-rh-S_pericallosal-posterior 25 210 90 0 3100 wm-lh-Unknown 0 0 0 0 3101 wm-lh-Corpus_callosum 50 50 50 0 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 180 20 30 0 3103 wm-lh-G_cingulate-Isthmus 60 25 25 0 3104 wm-lh-G_cingulate-Main_part 25 60 60 0 3105 wm-lh-G_cuneus 180 20 20 0 3106 wm-lh-G_frontal_inf-Opercular_part 220 20 100 0 3107 wm-lh-G_frontal_inf-Orbital_part 140 60 60 0 3108 wm-lh-G_frontal_inf-Triangular_part 180 220 140 0 3109 wm-lh-G_frontal_middle 140 100 180 0 3110 wm-lh-G_frontal_superior 180 20 140 0 3111 wm-lh-G_frontomarginal 140 20 140 0 3112 wm-lh-G_insular_long 21 10 10 0 3113 wm-lh-G_insular_short 225 140 140 0 3114 wm-lh-G_and_S_occipital_inferior 23 60 180 0 3115 wm-lh-G_occipital_middle 180 60 180 0 3116 wm-lh-G_occipital_superior 20 220 60 0 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 60 20 140 0 3118 wm-lh-G_occipit-temp_med-Lingual_part 220 180 140 0 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 65 100 20 0 3120 wm-lh-G_orbital 220 60 20 0 3121 wm-lh-G_paracentral 60 100 60 0 3122 wm-lh-G_parietal_inferior-Angular_part 20 60 220 0 3123 wm-lh-G_parietal_inferior-Supramarginal_part 100 100 60 0 3124 wm-lh-G_parietal_superior 220 180 220 0 3125 wm-lh-G_postcentral 20 180 140 0 3126 wm-lh-G_precentral 60 140 180 0 3127 wm-lh-G_precuneus 25 20 140 0 3128 wm-lh-G_rectus 20 60 100 0 3129 wm-lh-G_subcallosal 60 220 20 0 3130 wm-lh-G_subcentral 60 20 220 0 3131 wm-lh-G_temporal_inferior 220 220 100 0 3132 wm-lh-G_temporal_middle 180 60 60 0 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 60 60 220 0 3134 wm-lh-G_temp_sup-Lateral_aspect 220 60 220 0 3135 wm-lh-G_temp_sup-Planum_polare 65 220 60 0 3136 wm-lh-G_temp_sup-Planum_tempolare 25 140 20 0 3137 wm-lh-G_and_S_transverse_frontopolar 13 0 250 0 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 61 20 220 0 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 61 20 60 0 3140 wm-lh-Lat_Fissure-post_sgt 61 60 100 0 3141 wm-lh-Medial_wall 25 25 25 0 3142 wm-lh-Pole_occipital 140 20 60 0 3143 wm-lh-Pole_temporal 220 180 20 0 3144 wm-lh-S_calcarine 63 180 180 0 3145 wm-lh-S_central 221 20 10 0 3146 wm-lh-S_central_insula 21 220 20 0 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 183 100 20 0 3148 wm-lh-S_cingulate-Marginalis_part 221 20 100 0 3149 wm-lh-S_circular_insula_anterior 221 60 140 0 3150 wm-lh-S_circular_insula_inferior 221 20 220 0 3151 wm-lh-S_circular_insula_superior 61 220 220 0 3152 wm-lh-S_collateral_transverse_ant 100 200 200 0 3153 wm-lh-S_collateral_transverse_post 10 200 200 0 3154 wm-lh-S_frontal_inferior 221 220 20 0 3155 wm-lh-S_frontal_middle 141 20 100 0 3156 wm-lh-S_frontal_superior 61 220 100 0 3157 wm-lh-S_frontomarginal 21 220 60 0 3158 wm-lh-S_intermedius_primus-Jensen 141 60 20 0 3159 wm-lh-S_intraparietal-and_Parietal_transverse 143 20 220 0 3160 wm-lh-S_occipital_anterior 61 20 180 0 3161 wm-lh-S_occipital_middle_and_Lunatus 101 60 220 0 3162 wm-lh-S_occipital_superior_and_transversalis 21 20 140 0 3163 wm-lh-S_occipito-temporal_lateral 221 140 20 0 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 141 100 220 0 3165 wm-lh-S_orbital-H_shapped 101 20 20 0 3166 wm-lh-S_orbital_lateral 221 100 20 0 3167 wm-lh-S_orbital_medial-Or_olfactory 181 200 20 0 3168 wm-lh-S_paracentral 21 180 140 0 3169 wm-lh-S_parieto_occipital 101 100 180 0 3170 wm-lh-S_pericallosal 181 220 20 0 3171 wm-lh-S_postcentral 21 140 200 0 3172 wm-lh-S_precentral-Inferior-part 21 20 240 0 3173 wm-lh-S_precentral-Superior-part 21 20 200 0 3174 wm-lh-S_subcentral_ant 61 180 60 0 3175 wm-lh-S_subcentral_post 61 180 250 0 3176 wm-lh-S_suborbital 21 20 60 0 3177 wm-lh-S_subparietal 101 60 60 0 3178 wm-lh-S_supracingulate 21 220 220 0 3179 wm-lh-S_temporal_inferior 21 180 180 0 3180 wm-lh-S_temporal_superior 223 220 60 0 3181 wm-lh-S_temporal_transverse 221 60 60 0 4100 wm-rh-Unknown 0 0 0 0 4101 wm-rh-Corpus_callosum 50 50 50 0 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 180 20 30 0 4103 wm-rh-G_cingulate-Isthmus 60 25 25 0 4104 wm-rh-G_cingulate-Main_part 25 60 60 0 4105 wm-rh-G_cuneus 180 20 20 0 4106 wm-rh-G_frontal_inf-Opercular_part 220 20 100 0 4107 wm-rh-G_frontal_inf-Orbital_part 140 60 60 0 4108 wm-rh-G_frontal_inf-Triangular_part 180 220 140 0 4109 wm-rh-G_frontal_middle 140 100 180 0 4110 wm-rh-G_frontal_superior 180 20 140 0 4111 wm-rh-G_frontomarginal 140 20 140 0 4112 wm-rh-G_insular_long 21 10 10 0 4113 wm-rh-G_insular_short 225 140 140 0 4114 wm-rh-G_and_S_occipital_inferior 23 60 180 0 4115 wm-rh-G_occipital_middle 180 60 180 0 4116 wm-rh-G_occipital_superior 20 220 60 0 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 60 20 140 0 4118 wm-rh-G_occipit-temp_med-Lingual_part 220 180 140 0 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 65 100 20 0 4120 wm-rh-G_orbital 220 60 20 0 4121 wm-rh-G_paracentral 60 100 60 0 4122 wm-rh-G_parietal_inferior-Angular_part 20 60 220 0 4123 wm-rh-G_parietal_inferior-Supramarginal_part 100 100 60 0 4124 wm-rh-G_parietal_superior 220 180 220 0 4125 wm-rh-G_postcentral 20 180 140 0 4126 wm-rh-G_precentral 60 140 180 0 4127 wm-rh-G_precuneus 25 20 140 0 4128 wm-rh-G_rectus 20 60 100 0 4129 wm-rh-G_subcallosal 60 220 20 0 4130 wm-rh-G_subcentral 60 20 220 0 4131 wm-rh-G_temporal_inferior 220 220 100 0 4132 wm-rh-G_temporal_middle 180 60 60 0 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 60 60 220 0 4134 wm-rh-G_temp_sup-Lateral_aspect 220 60 220 0 4135 wm-rh-G_temp_sup-Planum_polare 65 220 60 0 4136 wm-rh-G_temp_sup-Planum_tempolare 25 140 20 0 4137 wm-rh-G_and_S_transverse_frontopolar 13 0 250 0 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 61 20 220 0 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 61 20 60 0 4140 wm-rh-Lat_Fissure-post_sgt 61 60 100 0 4141 wm-rh-Medial_wall 25 25 25 0 4142 wm-rh-Pole_occipital 140 20 60 0 4143 wm-rh-Pole_temporal 220 180 20 0 4144 wm-rh-S_calcarine 63 180 180 0 4145 wm-rh-S_central 221 20 10 0 4146 wm-rh-S_central_insula 21 220 20 0 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 183 100 20 0 4148 wm-rh-S_cingulate-Marginalis_part 221 20 100 0 4149 wm-rh-S_circular_insula_anterior 221 60 140 0 4150 wm-rh-S_circular_insula_inferior 221 20 220 0 4151 wm-rh-S_circular_insula_superior 61 220 220 0 4152 wm-rh-S_collateral_transverse_ant 100 200 200 0 4153 wm-rh-S_collateral_transverse_post 10 200 200 0 4154 wm-rh-S_frontal_inferior 221 220 20 0 4155 wm-rh-S_frontal_middle 141 20 100 0 4156 wm-rh-S_frontal_superior 61 220 100 0 4157 wm-rh-S_frontomarginal 21 220 60 0 4158 wm-rh-S_intermedius_primus-Jensen 141 60 20 0 4159 wm-rh-S_intraparietal-and_Parietal_transverse 143 20 220 0 4160 wm-rh-S_occipital_anterior 61 20 180 0 4161 wm-rh-S_occipital_middle_and_Lunatus 101 60 220 0 4162 wm-rh-S_occipital_superior_and_transversalis 21 20 140 0 4163 wm-rh-S_occipito-temporal_lateral 221 140 20 0 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 141 100 220 0 4165 wm-rh-S_orbital-H_shapped 101 20 20 0 4166 wm-rh-S_orbital_lateral 221 100 20 0 4167 wm-rh-S_orbital_medial-Or_olfactory 181 200 20 0 4168 wm-rh-S_paracentral 21 180 140 0 4169 wm-rh-S_parieto_occipital 101 100 180 0 4170 wm-rh-S_pericallosal 181 220 20 0 4171 wm-rh-S_postcentral 21 140 200 0 4172 wm-rh-S_precentral-Inferior-part 21 20 240 0 4173 wm-rh-S_precentral-Superior-part 21 20 200 0 4174 wm-rh-S_subcentral_ant 61 180 60 0 4175 wm-rh-S_subcentral_post 61 180 250 0 4176 wm-rh-S_suborbital 21 20 60 0 4177 wm-rh-S_subparietal 101 60 60 0 4178 wm-rh-S_supracingulate 21 220 220 0 4179 wm-rh-S_temporal_inferior 21 180 180 0 4180 wm-rh-S_temporal_superior 223 220 60 0 4181 wm-rh-S_temporal_transverse 221 60 60 0 5001 Left-UnsegmentedWhiteMatter 20 30 40 0 5002 Right-UnsegmentedWhiteMatter 20 30 40 0 # Below is for gyrus ambiens WM. mri_entowm_seg produces segs that are # 3201 and 4201, but these are taken, so changing it here to 3301 wm-lh-gyrus-ambiens 245 50 28 0 4301 wm-rh-gyrus-ambiens 245 50 128 0 # Below is the color table for white-matter pathways produced by dmri_paths #No. Label Name: R G B A # 5100 fmajor 204 102 102 0 5101 fminor 204 102 102 0 5102 cc.body 204 102 102 0 5103 cc.bodyc 255 153 153 0 5104 cc.bodypf 255 153 153 0 5105 cc.bodypm 255 204 204 0 5106 cc.bodyp 255 102 102 0 5107 cc.bodyt 255 204 204 0 5108 cc.genu 255 102 102 0 5109 cc.rostrum 204 51 51 0 5110 cc.splenium 204 51 51 0 5111 acomm 204 102 102 0 5112 mcp 102 51 153 0 # 5200 lh.atr 255 255 102 0 5201 lh.cab 153 204 0 0 5202 lh.ccg 0 153 153 0 5203 lh.cst 204 153 255 0 5204 lh.ilf 255 153 51 0 5205 lh.slfp 204 204 204 0 5206 lh.slft 153 255 255 0 5207 lh.unc 102 153 255 0 5208 lh.cb 0 153 153 0 5209 lh.slf 204 204 204 0 5210 lh.af 153 255 255 0 5211 lh.ifof 51 153 51 0 5212 lh.fx 255 153 204 0 5213 lh.fat 204 51 102 0 5214 lh.or 153 102 255 0 5215 lh.mlf 255 255 204 0 5216 lh.slf1 51 204 255 0 5217 lh.slf2 51 255 204 0 5218 lh.slf3 204 204 204 0 5219 lh.afd 153 255 255 0 5220 lh.afv 153 255 255 0 5221 lh.ar 153 0 204 0 5222 lh.cbd 0 153 153 0 5223 lh.cbv 153 204 0 0 5224 lh.emc 51 153 51 0 5225 lh.uf 102 153 255 0 # 5300 rh.atr 255 255 102 0 5301 rh.cab 153 204 0 0 5302 rh.ccg 0 153 153 0 5303 rh.cst 204 153 255 0 5304 rh.ilf 255 153 51 0 5305 rh.slfp 204 204 204 0 5306 rh.slft 153 255 255 0 5307 rh.unc 102 153 255 0 5308 rh.cb 0 153 153 0 5309 rh.slf 204 204 204 0 5310 rh.af 153 255 255 0 5311 rh.ifof 51 153 51 0 5312 rh.fx 255 153 204 0 5313 rh.fat 204 51 102 0 5314 rh.or 153 102 255 0 5315 rh.mlf 255 255 204 0 5316 rh.slf1 51 204 255 0 5317 rh.slf2 51 255 204 0 5318 rh.slf3 204 204 204 0 5319 rh.afd 153 255 255 0 5320 rh.afv 153 255 255 0 5321 rh.ar 153 0 204 0 5322 rh.cbd 0 153 153 0 5323 rh.cbv 153 204 0 0 5324 rh.emc 51 153 51 0 5325 rh.uf 102 153 255 0 ######################################## 6000 CST-orig 0 255 0 0 6001 CST-hammer 255 255 0 0 6002 CST-CVS 0 255 255 0 6003 CST-flirt 0 0 255 0 6010 Left-SLF1 236 16 231 0 6020 Right-SLF1 237 18 232 0 6030 Left-SLF3 236 13 227 0 6040 Right-SLF3 236 17 228 0 6050 Left-CST 1 255 1 0 6060 Right-CST 2 255 1 0 6070 Left-SLF2 236 14 230 0 6080 Right-SLF2 237 14 230 0 6101 Left-Dura-MCA 34 197 246 0 6102 Right-Dura-MCA 0 250 0 0 6103 Left-Ento-Dura 160 32 240 0 6104 Right-Ento-Dura 120 32 240 0 6111 Left-Transverse-Sinus 229 11 152 0 6112 Right-Transverse-Sinus 40 251 16 0 6113 Left-Sigmoid-Sinus 202 3 26 0 6114 Right-Sigmoid-Sinus 101 76 219 0 6115 Straight-Sinus 185 210 35 0 6116 Superior-Sinus-P 26 129 125 0 6117 Superior-Sinus-D 144 51 173 0 6118 Superior-Sinus-A 93 151 253 0 #No. Label Name: R G B A 7001 Lateral-nucleus 72 132 181 0 7002 Basolateral-nucleus 243 243 243 0 7003 Basal-nucleus 207 63 79 0 7004 Centromedial-nucleus 121 20 135 0 7005 Central-nucleus 197 60 248 0 7006 Medial-nucleus 2 149 2 0 7007 Cortical-nucleus 221 249 166 0 7008 Accessory-Basal-nucleus 232 146 35 0 7009 Corticoamygdaloid-transitio 20 60 120 0 7010 Anterior-amygdaloid-area-AAA 250 250 0 0 7011 Fusion-amygdala-HP-FAH 122 187 222 0 7012 Hippocampal-amygdala-transition-HATA 237 12 177 0 7013 Endopiriform-nucleus 10 49 255 0 7014 Lateral-nucleus-olfactory-tract 205 184 144 0 7015 Paralaminar-nucleus 45 205 165 0 7016 Intercalated-nucleus 117 160 175 0 7017 Prepiriform-cortex 221 217 21 0 7018 Periamygdaloid-cortex 20 60 120 0 7019 Envelope-Amygdala 141 21 100 0 7020 Extranuclear-Amydala 225 140 141 0 7030 Left-Amygdala-Cortical-Junction 255 85 255 0 7031 Right-Amygdala-Cortical-Junction 254 84 254 0 7100 Brainstem-inferior-colliculus 42 201 168 0 7101 Brainstem-cochlear-nucleus 168 104 162 0 7201 DR 121 255 250 0 7202 MnR 0 255 0 0 7203 PAG 153 153 255 0 7204 VTA 255 0 255 0 # replaced by 75 #7301 Left-LC 0 0 255 0 7302 Left-LDTg 255 127 0 0 7303 Left-mRt 255 0 0 0 7304 Left-PBC 255 255 0 0 7305 Left-PnO 0 127 255 0 7306 Left-PTg 127 0 255 0 # replaced by 76 #7401 Right-LC 0 0 255 0 7402 Right-LDTg 255 127 0 0 7403 Right-mRt 255 0 0 0 7404 Right-PBC 255 255 0 0 7405 Right-PnO 0 127 255 0 7406 Right-PTg 127 0 255 0 8001 Thalamus-Anterior 74 130 181 0 8002 Thalamus-Ventral-anterior 242 241 240 0 8003 Thalamus-Lateral-dorsal 206 65 78 0 8004 Thalamus-Lateral-posterior 120 21 133 0 8005 Thalamus-Ventral-lateral 195 61 246 0 8006 Thalamus-Ventral-posterior-medial 3 147 6 0 8007 Thalamus-Ventral-posterior-lateral 220 251 163 0 8008 Thalamus-intralaminar 232 146 33 0 8009 Thalamus-centromedian 4 114 14 0 8010 Thalamus-mediodorsal 121 184 220 0 8011 Thalamus-medial 235 11 175 0 8012 Thalamus-pulvinar 12 46 250 0 8013 Thalamus-lateral-geniculate 203 182 143 0 8014 Thalamus-medial-geniculate 42 204 167 0 # # Labels for thalamus parcellation using histological atlas (Iglesias et al.) # 8103 Left-AV 0 85 0 0 8104 Left-CeM 170 85 0 0 8105 Left-CL 0 170 0 0 8106 Left-CM 170 170 0 0 8108 Left-LD 170 255 0 0 8109 Left-LGN 0 0 127 0 8110 Left-LP 0 85 127 0 8111 Left-L-Sg 170 85 127 0 8112 Left-MDl 0 170 127 0 8113 Left-MDm 170 170 127 0 8115 Left-MGN 170 255 127 0 8116 Left-MV(Re) 0 0 255 0 8117 Left-Pc 170 0 255 0 8118 Left-Pf 0 85 255 0 8119 Left-Pt 170 85 255 0 8120 Left-PuA 0 170 255 0 8121 Left-PuI 170 170 255 0 8122 Left-PuL 0 255 255 0 8123 Left-PuM 170 255 255 0 8125 Left-R 255 0 0 0 8126 Left-VA 85 85 0 0 8127 Left-VAmc 255 85 0 0 8128 Left-VLa 85 170 0 0 8129 Left-VLp 255 170 0 0 8130 Left-VM 85 255 0 0 8133 Left-VPL 255 0 255 0 8134 Left-PaV 120 18 134 0 8135 Left-PuMm 170 255 255 0 8136 Left-PuMl 140 240 255 0 8203 Right-AV 0 85 0 0 8204 Right-CeM 170 85 0 0 8205 Right-CL 0 170 0 0 8206 Right-CM 170 170 0 0 8208 Right-LD 170 255 0 0 8209 Right-LGN 0 0 127 0 8210 Right-LP 0 85 127 0 8211 Right-L-Sg 170 85 127 0 8212 Right-MDl 0 170 127 0 8213 Right-MDm 170 170 127 0 8215 Right-MGN 170 255 127 0 8216 Right-MV(Re) 0 0 255 0 8217 Right-Pc 170 0 255 0 8218 Right-Pf 0 85 255 0 8219 Right-Pt 170 85 255 0 8220 Right-PuA 0 170 255 0 8221 Right-PuI 170 170 255 0 8222 Right-PuL 0 255 255 0 8223 Right-PuM 170 255 255 0 8225 Right-R 255 0 0 0 8226 Right-VA 85 85 0 0 8227 Right-VAmc 255 85 0 0 8228 Right-VLa 85 170 0 0 8229 Right-VLp 255 170 0 0 8230 Right-VM 85 255 0 0 8233 Right-VPL 255 0 255 0 8234 Right-PaV 120 18 134 0 8235 Right-PuMm 170 255 255 0 8236 Right-PuMl 140 240 255 0 # # Labels for thalamus parcellation using probabilistic tractography. See: # Functional--Anatomical Validation and Individual Variation of Diffusion # Tractography-based Segmentation of the Human Thalamus; Cerebral Cortex # January 2005;15:31--39, doi:10.1093/cercor/bhh105, Advance Access # publication July 6, 2004 # #No. Label Name: R G B A 9000 ctx-lh-prefrontal 50 100 30 0 9001 ctx-lh-primary-motor 30 100 45 0 9002 ctx-lh-premotor 130 100 165 0 9003 ctx-lh-temporal 105 25 5 0 9004 ctx-lh-posterior-parietal 125 70 55 0 9005 ctx-lh-prim-sec-somatosensory 225 20 105 0 9006 ctx-lh-occipital 225 20 15 0 9500 ctx-rh-prefrontal 50 200 30 0 9501 ctx-rh-primary-motor 30 150 45 0 9502 ctx-rh-premotor 130 150 165 0 9503 ctx-rh-temporal 105 75 5 0 9504 ctx-rh-posterior-parietal 125 120 55 0 9505 ctx-rh-prim-sec-somatosensory 225 70 105 0 9506 ctx-rh-occipital 225 70 15 0 # Below is the the color table for the brainstem segmentation based on the Paxinos Atlas # It is divided into cranial nerves, tracts, and nuclei which are subdivided by regions, medulla, pons and midbrain 10000 undefined 136 24 212 0 # Cranial nerves 10003 oculomotor_nerve_3n 36 124 212 0 10004 trochlear_nerve_4n 242 189 15 0 10005 trigeminal_nerve_5n 130 112 140 0 10006 abducens_nerve_6n 237 150 9 0 10007 facial_nerve_7n 45 68 145 0 10008 vestibulocochlear_nerve_8n 43 114 122 0 10009 glossopharygeal_nerve_9n 194 60 60 0 10010 vagus_nerve_10n 121 150 14 0 10011 accessory_nerve_11n 207 118 167 0 10012 hypoglossal_nerve_12n 114 98 140 0 # Tracts 10021 gracile_tract_gr 113 28 232 0 10022 cuneate_tract_cu 250 192 75 0 10023 spinal_trigeminal_tract_sp5 137 53 161 0 10024 dorsal_spinocerebellar_tract_dsc 250 69 8 0 10025 ventral_spinocerebellar_tract_vsc 117 43 77 0 10026 spinothalamic_tract_spth 71 20 134 0 10027 ventral_corticospinal_tract_vcs 170 37 68 0 10028 lateral_corticospinal_tract_lcs 99 98 171 0 10029 tectospinal_tract_ts 53 105 47 0 10030 medial_lemniscus_ml 209 170 242 0 10031 lateral_lemniscus_ll 141 87 120 0 10032 pyramid_py 240 47 44 0 10033 solitary_tract_sol 185 25 198 0 10034 amiculum_of_the_inferior_olive_ami 240 235 98 0 10035 internal_arcuate_fibers_ia 87 215 171 0 10036 inferior_cerebellar_peduncle_icp 153 163 255 0 10037 mid_cerebellar_peduncle_mcp 225 237 53 0 10038 superior_cerebellar_peduncle_scp 65 224 164 0 10039 central_tegmental_tract_ctg 16 187 185 0 10040 dorsal_acoustic_stria_das 2 76 56 0 10041 transverse_fibers_of_the_pons_tfp 40 32 209 0 10042 longitudinal_fibers_of_the_pons_lfp 59 117 42 0 10043 genu_of_the_facial_nerve_g7 161 178 209 0 10044 mammillotegmental_tract_mtg 187 231 162 0 10045 trigeminothalamic_tract_tth 143 182 241 0 10046 cerebral_peduncle_cp 13 185 164 0 10047 corticospinal_tract_csp 205 16 164 0 10048 corticobulbar_tract_cbu 195 209 118 0 10049 mesencephalic_trigeminal_tract_me5 220 107 63 0 10050 medial_longitudinal_fasciculus_mlf 40 51 218 0 # Nuclei # in the Medulla 10101 Vestibulocochlear_nucleus_8N 62 138 85 0 10102 Vagus_nerve_nucleus_10N 247 89 10 0 10103 Dorsal_motor_nucleus_of_vagus_caudal_part_10CA 245 118 54 0 10104 Dorsal_motor_nucleus_of_vagus_caudointermediate_part_10CaI 247 157 111 0 10105 Dorsal_motor_nucleus_of_vagus_centrointermediate_part_10CeI 242 194 170 0 10106 Dorsal_motor_nucleus_of_vagus_dorsointermediate_part_10DI 184 64 9 0 10107 Dorsal_motor_nucleus_of_vagus_dorsorostral_part_10DR 176 99 60 0 10108 Dorsal_motor_nucleus_of_vagus_medial_fringe_10F 166 126 106 0 10109 Dorsal_motor_nucleus_of_vagus_rostrointermediate_part_10RI 115 73 52 0 10110 Dorsal_motor_nucleus_of_vagus_ventrointermediate_part_10VI 179 93 50 0 10111 Dorsal_motor_nucleus_of_vagus_ventrorostral_part_10VR 209 106 54 0 10112 Accessory_nerve_nucleus_11N 54 49 212 0 10113 Hypoglossal_nucleus_12N 121 240 17 0 10114 Hypoglossal_nucleus_geniohyoid_part_12GH 150 237 74 0 10115 Hypoglossal_nucleus_lateral_part_12L 189 242 143 0 10116 Hypoglossal_nucleus_medial_part_12M 84 166 12 0 10117 Hypoglossal_nucleus_ventral_part_12V 114 168 67 0 10118 Hypoglossal_nucleus_ventrolateral_part_12VL 118 140 98 0 10119 Gracile_nucleus_Gr 238 247 106 0 10120 Cuneate_nucleus_Cu 10 136 240 0 10121 Cuneate_nucleus_rotundus_part_CuR 109 177 232 0 10122 Cuneate_nucleus_triangular_part_CuT 86 121 150 0 10123 External_cuneate_nucleus_ECu 5 65 115 0 10124 Lateral_pericuneate_nucleus_LPCu 61 98 219 0 10125 Medial_pericuneate_nucleus_MPCu 9 61 230 0 10126 Spinal_trigeminal_nucleus_Sp5 5 250 168 0 10127 Spinal_trigeminal_nucleus_caudal_part_Sp5C 48 140 109 0 10128 Spinal_trigeminal_nucleus_caudal_part_lamina_1_Sp5C1 165 207 193 0 10129 Spinal_trigeminal_nucleus_caudal_part_lamina_2_Sp5C2 7 84 58 0 10130 Spinal_trigeminal_nucleus_caudal_part_lamina_3_4_Sp5C3/4 58 140 113 0 10131 Spinal_trigeminal_nucleus_interpolar_part_Sp5I 72 110 97 0 10132 Spinal_trigeminal_nucleus_oral_part_Sp5O 104 227 186 0 10133 Ambiguus_nucleus_Amb 117 25 198 0 10134 Ambiguus_nucleus_compact_part_AmbC 171 99 235 0 10135 Ambiguus_nucleus_loose_part_AmbL 203 161 240 0 10136 Ambiguus_nucleus_semicompact_part_AmbSC 99 50 143 0 10137 Retroambiguus_nucleus_RAmb 200 157 90 0 10138 Intermediate_reticular_nucleus_IRt 242 169 51 0 10139 Solitary_nucleus_Sol 120 165 144 0 10140 Solitary_nucleus_commissural_part_SolC 5 247 134 0 10141 Solitary_nucleus_dorsal_part_SolD 33 235 156 0 10142 Solitary_nucleus_dorsolateral_part_SolDL 146 247 200 0 10143 Solitary_nucleus_gelatinous_part_SolG 213 245 230 0 10144 Solitary_nucleus_interstitial_part_SolI 130 173 153 0 10145 Solitary_nucleus_intermediate_part_SolIM 67 125 98 0 10146 Solitary_nucleus_medial_part_SolM 37 168 107 0 10147 Solitary_nucleus_paracommissural_part_SolPaC 36 92 66 0 10148 Solitary_nucleus_ventral_part_SolV 106 143 125 0 10149 Solitary_nucleus_ventrolateral_SolVL 11 74 45 0 10150 Inferior_olivary_nucleus_IO 182 10 250 0 10151 Inferior_olivary_subnucleus_A_of_medial_nucleus_IOA 130 13 168 0 10152 Inferior_olivary_subnucleus_B_of_medial_nucleus_IOB 203 91 240 0 10153 Inferior_olivary_beta_subnucleus_IoBe 194 81 232 0 10154 Inferior_olivary_subnucleus_C_of_medial_nucleus_IOC 124 84 138 0 10155 Inferior_olivary_dorsal_nucleus_IOD 188 139 204 0 10156 Inferior_olivary_dorsal_nucleus_caudal_part_IODC 126 53 150 0 10157 Inferior_olivary_dorsomedial_cell_group_IODM 146 132 150 0 10158 Inferior_olivary_cap_of_Kooy_of_the_medial_nucleus_IOK 126 32 158 0 10159 Inferior_olivary_medial_nucleus_IOM 186 22 115 0 10160 Inferior_olivary_principal_nucleus_IOPr 80 6 105 0 10161 Inferior_olivary_ventrolateral_protrusion_IOVL 157 91 179 0 10162 Intercalated_nucleus_In 223 226 196 0 10163 Raphe_pallidus_nucleus_RPa 178 150 79 0 10164 Raphe_obscurus_nucleus_ROb 126 233 88 0 10165 Raphe_magnus_nucleus_RMg 30 178 165 0 10166 Gigantocellular_reticular_nucleus_Gi 167 186 61 0 10167 Gigantocellular_reticular_nucleus_ventral_part_GiV 195 230 7 0 10168 Gigantocellular_reticular_nucleus_alpha_part_GiA 219 232 146 0 10169 Dorsal_paragigantocellular_nucleus_DPGi 215 73 252 0 10170 Lateral_paragigantocellular_nucleus_LPGi 47 224 163 0 10171 Vestibular_nucleus_Ve 36 121 43 0 10172 Lateral_vestibular_nucleus_LVe 172 34 15 0 10173 Medial_vestibular_nucleus_MVe 106 80 64 0 10174 Medial_vestibular_nucleus_magnocellular_part_MVeMC 48 28 158 0 10175 Medial_vestibular_nucleus_parvocellular_part_MVePC 164 152 237 0 10176 Paravestibular_nucleus_PaVe 13 76 235 0 10177 Inferior_vestibular_nucleus_(spinal)_SpVe 249 246 217 0 10178 Superior_vestibular_nucleus_SuVe 103 152 30 0 10179 Nucleus_of_Roller_Ro 50 231 44 0 10180 Arcuate_nucleus_Ar 242 168 29 0 10181 Anteroventral_cochlear_nucleus_AVC 215 89 28 0 10182 Dorsal_cochlear_nucleus_DC 232 140 95 0 10183 Granular_cell_layer_of_the_cochlear_nucleus_GrC 143 77 46 0 10184 Ventral_cochlear_nuclear_posterior_part_VCP 148 52 6 0 # in the Pons 10301 Motor_trigeminal_nucleus_5N 7 250 209 0 10302 Motor_trigeminal_nucleus_anterior_digastric_part_5ADi 100 250 225 0 10303 Motor_trigeminal_nucleus_masseter_part_5Ma 160 250 235 0 10304 Mylohyoid_subnuleus_of_the_motor_trigeminal_nucleus_5MHy 215 247 242 0 10305 Motor_trigeminal_nucleus_parvocellar_part_5PC 3 161 134 0 10306 Motor_trigeminal_nucleus_pterygoid_part_5Pt 75 153 140 0 10307 Motor_trigeminal_nucleus_temporalis_part_5Te 112 140 136 0 10308 Abducens_nucleus_6N 185 212 11 0 10309 Facial_nucleus_7N 250 0 140 0 10310 Facial_nucleus_dorsal_intermediate_subnucleus_7DI 242 48 155 0 10311 Facial_nucleus_dorsomedial_subnucleus_7DM 250 120 191 0 10312 Facial_nucleus_intermediate_part_7I 245 181 216 0 10313 Facial_nucleus_lateral_subnucleus_7L 250 215 234 0 10314 Facial_nucleus_ventral_intermediate_subnucleus_7VI 150 3 84 0 10315 Facial_nucleus_ventrolateral_subnucleus_7VL 150 65 112 0 10316 Facial_nucleus_ventromedial_subnucleus_7VM 148 105 129 0 10317 Pontine_nuclei_Pn 105 130 224 0 10318 Pontine_reticular_nucleus_caudal_part_PRC(PnC) 246 160 93 0 10319 Pontine_reticular_nucleus_oral_part_PRO(PnO) 133 63 9 0 10320 Raphe_pontis_nucleus_RPn 70 153 237 0 10321 Dorsal_raphe_nucleus_DR 41 66 83 0 10322 Dorsal_raphe_nucleus_caudal_part_DRC 43 108 153 0 10323 Dorsal_raphe_nucleus_dorsal_part_DRD 23 148 232 0 10324 Dorsal_raphe_nucleus_interfascicular_part_DRI 108 177 224 0 10325 Dorsal_raphe_nucleus_lateral_part_DRL 21 98 150 0 10326 Dorsal_raphe_nucleus_ventral_part_DRV 174 210 235 0 10327 Median_raphe_nucleus_MnR 248 139 133 0 10328 Paramedian_raphe_nucleus_PMnR 195 35 162 0 10329 Posterodorsal_raphe_nucleus_PDR 5 148 245 0 10330 Mesencephalic_trigeminal_nucleus_Me5 91 187 197 0 10331 Locus_coeruleus_LC 57 68 183 0 10332 Subcoeruleus_nucleus_SubC 152 159 235 0 10333 Subcoeruleus_nucleus_dorsal_part_SubCD 76 81 135 0 10334 Subcoeruleus_nucleus_ventral_part_SubDV 24 35 150 0 10335 Laterodorsal_tegmental_nucleus_LDTg 187 118 113 0 10336 Laterodorsal_tegmental_nucleus_ventral_part_LDTgV 43 151 229 0 10337 Dorsal_tegmental_nucleus_central_part_DTgC 255 48 167 0 10338 Dorsal_tegmental_nucleus_pericentral_part_DTgP 173 95 44 0 10339 Posterodorsal_tegmental_nucleus_PDTg 33 34 248 0 10340 Reticulotegmental_nucleus_RtTg 29 244 26 0 10341 Reticulotegmental_nucleus_lateral_part_RtTgL 24 137 128 0 10342 Central_gray_of_the_rhombencephalon_CGPn 173 59 71 0 10343 Superior_olivary_nucleus_SO 197 134 141 0 10344 Medial_superior_olivary_nucleus_MSO 230 48 69 0 10345 Lateral_superior_olivary_nucleus_LSO 232 167 175 0 10346 Superior_paraolivary_nucleus_SPO 135 72 79 0 10347 Medioventral_periolivary_nucleus_MVPO 158 17 34 0 10348 Lateroventral_periolivary_nucleus_LVPO 250 80 100 0 10349 Matrix_region_of_the_rhombencephalon_Mx 228 124 216 0 10350 Lateral_parabrachial_nucleus_LPB 93 236 213 0 10351 Lateral_parabrachial_nucleus_central_part_LPBC 13 163 138 0 10352 Lateral_parabrachial_nucleus_dorsal_part_LPBD 161 237 225 0 10353 Lateral_parabrachial_nucleus_external_part_LPBE 67 125 115 0 10354 Lateral_parabrachial_nucleus_superior_part_LPBS 12 130 110 0 10355 Medial_parabrachial_nucleus_MPB 224 128 49 0 10356 Medial_parabrachial_nucleus_external_part_MPBE 222 182 149 0 # in the Midbrain 10401 Oculomotor_nucleus_3N 144 212 36 0 10402 Trochlear_nucleus_4N 212 83 36 0 10403 Inferior_colliculus_IC 148 30 154 0 10404 Nucleus_of_the_brachium_of_the_inferior_colliculus_BIC 235 5 247 0 10405 Central_nucleus_of_the_inferior_colliculus_CIC 237 131 242 0 10406 Dorsal_cortex_of_the_inferior_colliculus_DCIC 205 169 207 0 10407 External_cortex_of_the_inferior_colliculus_ECIC 129 53 133 0 10408 Superior_colliculus_SC 34 124 43 0 10409 Deep_gray_layer_of_the_superior_colliculus_DpG 137 171 140 0 10410 Deep_white_layer_of_the_superior_colliculus_DpWh 218 240 220 0 10411 Intermediate_gray_layer_of_the_superior_colliculus_InG 7 125 19 0 10412 Intermediate_white_layer_of_the_superior_colliculus_InWh 170 240 177 0 10413 Superficial_gray_layer_of_the_superior_colliculus_SuG 44 77 43 0 10414 Superficial_white_layer_of_the_superior_colliculus_SuWh 51 171 63 0 10415 Optic_nerve_layer_of_the_superior_colliculus_Op 4 87 13 0 10416 Periaqueductal_gray_PAG 206 78 109 0 10417 Dorsolateral_periaqueductal_gray_DLPAG 242 5 64 0 10418 Dorsomedial_periaqueductal_gray_DMPAG 143 13 45 0 10419 Lateral_periaqueductal_gray_LPAG 232 151 171 0 10420 Ventrolateral_periaqueductal_gray_VLPAG 125 57 74 0 10421 Red_nucleus_RN 250 2 2 0 10422 Red_nucleus_magnocellular_part_RMC 240 132 132 0 10423 Red_nucleus_parvocellular_part_RPC 135 39 39 0 10424 Substantia_nigra_SN 252 220 131 0 10425 Substantia_nigra_compact_part_SNC 245 181 5 0 10426 Substantia_nigra_compact_part_dorsal_tier_SNCD 153 113 3 0 10427 Mesencephalic_reticular_nuclei(formation)_MRN(mRt) 240 100 156 0 10434 Ventral_tegmental_area_VTA 143 22 141 0 10435 Ventral_tegmental_area_rostral_part_VTAR 194 110 192 0 10436 Anterior_pretectal_nucleus_APT 3 10 123 0 # Below is the color table for the cortical labels of the seg volume # created by mri_aparc2aseg (with --a2009s flag) in which the aseg # cortex label is replaced by the labels in the aparc.a2009s. The # cortical labels are the same as in Simple_surface_labels2009.txt, # except that left hemisphere has 11100 added to the index and the # right has 12100 added. The label names are also prepended with # ctx_lh_, ctx_rh_, wm_lh_ and wm_rh_ (note usage of _ instead of - # to differentiate from a2005s labels). #No. Label Name: R G B A 11100 ctx_lh_Unknown 0 0 0 0 11101 ctx_lh_G_and_S_frontomargin 23 220 60 0 11102 ctx_lh_G_and_S_occipital_inf 23 60 180 0 11103 ctx_lh_G_and_S_paracentral 63 100 60 0 11104 ctx_lh_G_and_S_subcentral 63 20 220 0 11105 ctx_lh_G_and_S_transv_frontopol 13 0 250 0 11106 ctx_lh_G_and_S_cingul-Ant 26 60 0 0 11107 ctx_lh_G_and_S_cingul-Mid-Ant 26 60 75 0 11108 ctx_lh_G_and_S_cingul-Mid-Post 26 60 150 0 11109 ctx_lh_G_cingul-Post-dorsal 25 60 250 0 11110 ctx_lh_G_cingul-Post-ventral 60 25 25 0 11111 ctx_lh_G_cuneus 180 20 20 0 11112 ctx_lh_G_front_inf-Opercular 220 20 100 0 11113 ctx_lh_G_front_inf-Orbital 140 60 60 0 11114 ctx_lh_G_front_inf-Triangul 180 220 140 0 11115 ctx_lh_G_front_middle 140 100 180 0 11116 ctx_lh_G_front_sup 180 20 140 0 11117 ctx_lh_G_Ins_lg_and_S_cent_ins 23 10 10 0 11118 ctx_lh_G_insular_short 225 140 140 0 11119 ctx_lh_G_occipital_middle 180 60 180 0 11120 ctx_lh_G_occipital_sup 20 220 60 0 11121 ctx_lh_G_oc-temp_lat-fusifor 60 20 140 0 11122 ctx_lh_G_oc-temp_med-Lingual 220 180 140 0 11123 ctx_lh_G_oc-temp_med-Parahip 65 100 20 0 11124 ctx_lh_G_orbital 220 60 20 0 11125 ctx_lh_G_pariet_inf-Angular 20 60 220 0 11126 ctx_lh_G_pariet_inf-Supramar 100 100 60 0 11127 ctx_lh_G_parietal_sup 220 180 220 0 11128 ctx_lh_G_postcentral 20 180 140 0 11129 ctx_lh_G_precentral 60 140 180 0 11130 ctx_lh_G_precuneus 25 20 140 0 11131 ctx_lh_G_rectus 20 60 100 0 11132 ctx_lh_G_subcallosal 60 220 20 0 11133 ctx_lh_G_temp_sup-G_T_transv 60 60 220 0 11134 ctx_lh_G_temp_sup-Lateral 220 60 220 0 11135 ctx_lh_G_temp_sup-Plan_polar 65 220 60 0 11136 ctx_lh_G_temp_sup-Plan_tempo 25 140 20 0 11137 ctx_lh_G_temporal_inf 220 220 100 0 11138 ctx_lh_G_temporal_middle 180 60 60 0 11139 ctx_lh_Lat_Fis-ant-Horizont 61 20 220 0 11140 ctx_lh_Lat_Fis-ant-Vertical 61 20 60 0 11141 ctx_lh_Lat_Fis-post 61 60 100 0 11142 ctx_lh_Medial_wall 25 25 25 0 11143 ctx_lh_Pole_occipital 140 20 60 0 11144 ctx_lh_Pole_temporal 220 180 20 0 11145 ctx_lh_S_calcarine 63 180 180 0 11146 ctx_lh_S_central 221 20 10 0 11147 ctx_lh_S_cingul-Marginalis 221 20 100 0 11148 ctx_lh_S_circular_insula_ant 221 60 140 0 11149 ctx_lh_S_circular_insula_inf 221 20 220 0 11150 ctx_lh_S_circular_insula_sup 61 220 220 0 11151 ctx_lh_S_collat_transv_ant 100 200 200 0 11152 ctx_lh_S_collat_transv_post 10 200 200 0 11153 ctx_lh_S_front_inf 221 220 20 0 11154 ctx_lh_S_front_middle 141 20 100 0 11155 ctx_lh_S_front_sup 61 220 100 0 11156 ctx_lh_S_interm_prim-Jensen 141 60 20 0 11157 ctx_lh_S_intrapariet_and_P_trans 143 20 220 0 11158 ctx_lh_S_oc_middle_and_Lunatus 101 60 220 0 11159 ctx_lh_S_oc_sup_and_transversal 21 20 140 0 11160 ctx_lh_S_occipital_ant 61 20 180 0 11161 ctx_lh_S_oc-temp_lat 221 140 20 0 11162 ctx_lh_S_oc-temp_med_and_Lingual 141 100 220 0 11163 ctx_lh_S_orbital_lateral 221 100 20 0 11164 ctx_lh_S_orbital_med-olfact 181 200 20 0 11165 ctx_lh_S_orbital-H_Shaped 101 20 20 0 11166 ctx_lh_S_parieto_occipital 101 100 180 0 11167 ctx_lh_S_pericallosal 181 220 20 0 11168 ctx_lh_S_postcentral 21 140 200 0 11169 ctx_lh_S_precentral-inf-part 21 20 240 0 11170 ctx_lh_S_precentral-sup-part 21 20 200 0 11171 ctx_lh_S_suborbital 21 20 60 0 11172 ctx_lh_S_subparietal 101 60 60 0 11173 ctx_lh_S_temporal_inf 21 180 180 0 11174 ctx_lh_S_temporal_sup 223 220 60 0 11175 ctx_lh_S_temporal_transverse 221 60 60 0 11300 ctx_lh_high_myelin 235 62 78 0 12100 ctx_rh_Unknown 0 0 0 0 12101 ctx_rh_G_and_S_frontomargin 23 220 60 0 12102 ctx_rh_G_and_S_occipital_inf 23 60 180 0 12103 ctx_rh_G_and_S_paracentral 63 100 60 0 12104 ctx_rh_G_and_S_subcentral 63 20 220 0 12105 ctx_rh_G_and_S_transv_frontopol 13 0 250 0 12106 ctx_rh_G_and_S_cingul-Ant 26 60 0 0 12107 ctx_rh_G_and_S_cingul-Mid-Ant 26 60 75 0 12108 ctx_rh_G_and_S_cingul-Mid-Post 26 60 150 0 12109 ctx_rh_G_cingul-Post-dorsal 25 60 250 0 12110 ctx_rh_G_cingul-Post-ventral 60 25 25 0 12111 ctx_rh_G_cuneus 180 20 20 0 12112 ctx_rh_G_front_inf-Opercular 220 20 100 0 12113 ctx_rh_G_front_inf-Orbital 140 60 60 0 12114 ctx_rh_G_front_inf-Triangul 180 220 140 0 12115 ctx_rh_G_front_middle 140 100 180 0 12116 ctx_rh_G_front_sup 180 20 140 0 12117 ctx_rh_G_Ins_lg_and_S_cent_ins 23 10 10 0 12118 ctx_rh_G_insular_short 225 140 140 0 12119 ctx_rh_G_occipital_middle 180 60 180 0 12120 ctx_rh_G_occipital_sup 20 220 60 0 12121 ctx_rh_G_oc-temp_lat-fusifor 60 20 140 0 12122 ctx_rh_G_oc-temp_med-Lingual 220 180 140 0 12123 ctx_rh_G_oc-temp_med-Parahip 65 100 20 0 12124 ctx_rh_G_orbital 220 60 20 0 12125 ctx_rh_G_pariet_inf-Angular 20 60 220 0 12126 ctx_rh_G_pariet_inf-Supramar 100 100 60 0 12127 ctx_rh_G_parietal_sup 220 180 220 0 12128 ctx_rh_G_postcentral 20 180 140 0 12129 ctx_rh_G_precentral 60 140 180 0 12130 ctx_rh_G_precuneus 25 20 140 0 12131 ctx_rh_G_rectus 20 60 100 0 12132 ctx_rh_G_subcallosal 60 220 20 0 12133 ctx_rh_G_temp_sup-G_T_transv 60 60 220 0 12134 ctx_rh_G_temp_sup-Lateral 220 60 220 0 12135 ctx_rh_G_temp_sup-Plan_polar 65 220 60 0 12136 ctx_rh_G_temp_sup-Plan_tempo 25 140 20 0 12137 ctx_rh_G_temporal_inf 220 220 100 0 12138 ctx_rh_G_temporal_middle 180 60 60 0 12139 ctx_rh_Lat_Fis-ant-Horizont 61 20 220 0 12140 ctx_rh_Lat_Fis-ant-Vertical 61 20 60 0 12141 ctx_rh_Lat_Fis-post 61 60 100 0 12142 ctx_rh_Medial_wall 25 25 25 0 12143 ctx_rh_Pole_occipital 140 20 60 0 12144 ctx_rh_Pole_temporal 220 180 20 0 12145 ctx_rh_S_calcarine 63 180 180 0 12146 ctx_rh_S_central 221 20 10 0 12147 ctx_rh_S_cingul-Marginalis 221 20 100 0 12148 ctx_rh_S_circular_insula_ant 221 60 140 0 12149 ctx_rh_S_circular_insula_inf 221 20 220 0 12150 ctx_rh_S_circular_insula_sup 61 220 220 0 12151 ctx_rh_S_collat_transv_ant 100 200 200 0 12152 ctx_rh_S_collat_transv_post 10 200 200 0 12153 ctx_rh_S_front_inf 221 220 20 0 12154 ctx_rh_S_front_middle 141 20 100 0 12155 ctx_rh_S_front_sup 61 220 100 0 12156 ctx_rh_S_interm_prim-Jensen 141 60 20 0 12157 ctx_rh_S_intrapariet_and_P_trans 143 20 220 0 12158 ctx_rh_S_oc_middle_and_Lunatus 101 60 220 0 12159 ctx_rh_S_oc_sup_and_transversal 21 20 140 0 12160 ctx_rh_S_occipital_ant 61 20 180 0 12161 ctx_rh_S_oc-temp_lat 221 140 20 0 12162 ctx_rh_S_oc-temp_med_and_Lingual 141 100 220 0 12163 ctx_rh_S_orbital_lateral 221 100 20 0 12164 ctx_rh_S_orbital_med-olfact 181 200 20 0 12165 ctx_rh_S_orbital-H_Shaped 101 20 20 0 12166 ctx_rh_S_parieto_occipital 101 100 180 0 12167 ctx_rh_S_pericallosal 181 220 20 0 12168 ctx_rh_S_postcentral 21 140 200 0 12169 ctx_rh_S_precentral-inf-part 21 20 240 0 12170 ctx_rh_S_precentral-sup-part 21 20 200 0 12171 ctx_rh_S_suborbital 21 20 60 0 12172 ctx_rh_S_subparietal 101 60 60 0 12173 ctx_rh_S_temporal_inf 21 180 180 0 12174 ctx_rh_S_temporal_sup 223 220 60 0 12175 ctx_rh_S_temporal_transverse 221 60 60 0 12300 ctx_rh_high_myelin 235 82 78 0 #No. Label Name: R G B A 13100 wm_lh_Unknown 0 0 0 0 13101 wm_lh_G_and_S_frontomargin 23 220 60 0 13102 wm_lh_G_and_S_occipital_inf 23 60 180 0 13103 wm_lh_G_and_S_paracentral 63 100 60 0 13104 wm_lh_G_and_S_subcentral 63 20 220 0 13105 wm_lh_G_and_S_transv_frontopol 13 0 250 0 13106 wm_lh_G_and_S_cingul-Ant 26 60 0 0 13107 wm_lh_G_and_S_cingul-Mid-Ant 26 60 75 0 13108 wm_lh_G_and_S_cingul-Mid-Post 26 60 150 0 13109 wm_lh_G_cingul-Post-dorsal 25 60 250 0 13110 wm_lh_G_cingul-Post-ventral 60 25 25 0 13111 wm_lh_G_cuneus 180 20 20 0 13112 wm_lh_G_front_inf-Opercular 220 20 100 0 13113 wm_lh_G_front_inf-Orbital 140 60 60 0 13114 wm_lh_G_front_inf-Triangul 180 220 140 0 13115 wm_lh_G_front_middle 140 100 180 0 13116 wm_lh_G_front_sup 180 20 140 0 13117 wm_lh_G_Ins_lg_and_S_cent_ins 23 10 10 0 13118 wm_lh_G_insular_short 225 140 140 0 13119 wm_lh_G_occipital_middle 180 60 180 0 13120 wm_lh_G_occipital_sup 20 220 60 0 13121 wm_lh_G_oc-temp_lat-fusifor 60 20 140 0 13122 wm_lh_G_oc-temp_med-Lingual 220 180 140 0 13123 wm_lh_G_oc-temp_med-Parahip 65 100 20 0 13124 wm_lh_G_orbital 220 60 20 0 13125 wm_lh_G_pariet_inf-Angular 20 60 220 0 13126 wm_lh_G_pariet_inf-Supramar 100 100 60 0 13127 wm_lh_G_parietal_sup 220 180 220 0 13128 wm_lh_G_postcentral 20 180 140 0 13129 wm_lh_G_precentral 60 140 180 0 13130 wm_lh_G_precuneus 25 20 140 0 13131 wm_lh_G_rectus 20 60 100 0 13132 wm_lh_G_subcallosal 60 220 20 0 13133 wm_lh_G_temp_sup-G_T_transv 60 60 220 0 13134 wm_lh_G_temp_sup-Lateral 220 60 220 0 13135 wm_lh_G_temp_sup-Plan_polar 65 220 60 0 13136 wm_lh_G_temp_sup-Plan_tempo 25 140 20 0 13137 wm_lh_G_temporal_inf 220 220 100 0 13138 wm_lh_G_temporal_middle 180 60 60 0 13139 wm_lh_Lat_Fis-ant-Horizont 61 20 220 0 13140 wm_lh_Lat_Fis-ant-Vertical 61 20 60 0 13141 wm_lh_Lat_Fis-post 61 60 100 0 13142 wm_lh_Medial_wall 25 25 25 0 13143 wm_lh_Pole_occipital 140 20 60 0 13144 wm_lh_Pole_temporal 220 180 20 0 13145 wm_lh_S_calcarine 63 180 180 0 13146 wm_lh_S_central 221 20 10 0 13147 wm_lh_S_cingul-Marginalis 221 20 100 0 13148 wm_lh_S_circular_insula_ant 221 60 140 0 13149 wm_lh_S_circular_insula_inf 221 20 220 0 13150 wm_lh_S_circular_insula_sup 61 220 220 0 13151 wm_lh_S_collat_transv_ant 100 200 200 0 13152 wm_lh_S_collat_transv_post 10 200 200 0 13153 wm_lh_S_front_inf 221 220 20 0 13154 wm_lh_S_front_middle 141 20 100 0 13155 wm_lh_S_front_sup 61 220 100 0 13156 wm_lh_S_interm_prim-Jensen 141 60 20 0 13157 wm_lh_S_intrapariet_and_P_trans 143 20 220 0 13158 wm_lh_S_oc_middle_and_Lunatus 101 60 220 0 13159 wm_lh_S_oc_sup_and_transversal 21 20 140 0 13160 wm_lh_S_occipital_ant 61 20 180 0 13161 wm_lh_S_oc-temp_lat 221 140 20 0 13162 wm_lh_S_oc-temp_med_and_Lingual 141 100 220 0 13163 wm_lh_S_orbital_lateral 221 100 20 0 13164 wm_lh_S_orbital_med-olfact 181 200 20 0 13165 wm_lh_S_orbital-H_Shaped 101 20 20 0 13166 wm_lh_S_parieto_occipital 101 100 180 0 13167 wm_lh_S_pericallosal 181 220 20 0 13168 wm_lh_S_postcentral 21 140 200 0 13169 wm_lh_S_precentral-inf-part 21 20 240 0 13170 wm_lh_S_precentral-sup-part 21 20 200 0 13171 wm_lh_S_suborbital 21 20 60 0 13172 wm_lh_S_subparietal 101 60 60 0 13173 wm_lh_S_temporal_inf 21 180 180 0 13174 wm_lh_S_temporal_sup 223 220 60 0 13175 wm_lh_S_temporal_transverse 221 60 60 0 14100 wm_rh_Unknown 0 0 0 0 14101 wm_rh_G_and_S_frontomargin 23 220 60 0 14102 wm_rh_G_and_S_occipital_inf 23 60 180 0 14103 wm_rh_G_and_S_paracentral 63 100 60 0 14104 wm_rh_G_and_S_subcentral 63 20 220 0 14105 wm_rh_G_and_S_transv_frontopol 13 0 250 0 14106 wm_rh_G_and_S_cingul-Ant 26 60 0 0 14107 wm_rh_G_and_S_cingul-Mid-Ant 26 60 75 0 14108 wm_rh_G_and_S_cingul-Mid-Post 26 60 150 0 14109 wm_rh_G_cingul-Post-dorsal 25 60 250 0 14110 wm_rh_G_cingul-Post-ventral 60 25 25 0 14111 wm_rh_G_cuneus 180 20 20 0 14112 wm_rh_G_front_inf-Opercular 220 20 100 0 14113 wm_rh_G_front_inf-Orbital 140 60 60 0 14114 wm_rh_G_front_inf-Triangul 180 220 140 0 14115 wm_rh_G_front_middle 140 100 180 0 14116 wm_rh_G_front_sup 180 20 140 0 14117 wm_rh_G_Ins_lg_and_S_cent_ins 23 10 10 0 14118 wm_rh_G_insular_short 225 140 140 0 14119 wm_rh_G_occipital_middle 180 60 180 0 14120 wm_rh_G_occipital_sup 20 220 60 0 14121 wm_rh_G_oc-temp_lat-fusifor 60 20 140 0 14122 wm_rh_G_oc-temp_med-Lingual 220 180 140 0 14123 wm_rh_G_oc-temp_med-Parahip 65 100 20 0 14124 wm_rh_G_orbital 220 60 20 0 14125 wm_rh_G_pariet_inf-Angular 20 60 220 0 14126 wm_rh_G_pariet_inf-Supramar 100 100 60 0 14127 wm_rh_G_parietal_sup 220 180 220 0 14128 wm_rh_G_postcentral 20 180 140 0 14129 wm_rh_G_precentral 60 140 180 0 14130 wm_rh_G_precuneus 25 20 140 0 14131 wm_rh_G_rectus 20 60 100 0 14132 wm_rh_G_subcallosal 60 220 20 0 14133 wm_rh_G_temp_sup-G_T_transv 60 60 220 0 14134 wm_rh_G_temp_sup-Lateral 220 60 220 0 14135 wm_rh_G_temp_sup-Plan_polar 65 220 60 0 14136 wm_rh_G_temp_sup-Plan_tempo 25 140 20 0 14137 wm_rh_G_temporal_inf 220 220 100 0 14138 wm_rh_G_temporal_middle 180 60 60 0 14139 wm_rh_Lat_Fis-ant-Horizont 61 20 220 0 14140 wm_rh_Lat_Fis-ant-Vertical 61 20 60 0 14141 wm_rh_Lat_Fis-post 61 60 100 0 14142 wm_rh_Medial_wall 25 25 25 0 14143 wm_rh_Pole_occipital 140 20 60 0 14144 wm_rh_Pole_temporal 220 180 20 0 14145 wm_rh_S_calcarine 63 180 180 0 14146 wm_rh_S_central 221 20 10 0 14147 wm_rh_S_cingul-Marginalis 221 20 100 0 14148 wm_rh_S_circular_insula_ant 221 60 140 0 14149 wm_rh_S_circular_insula_inf 221 20 220 0 14150 wm_rh_S_circular_insula_sup 61 220 220 0 14151 wm_rh_S_collat_transv_ant 100 200 200 0 14152 wm_rh_S_collat_transv_post 10 200 200 0 14153 wm_rh_S_front_inf 221 220 20 0 14154 wm_rh_S_front_middle 141 20 100 0 14155 wm_rh_S_front_sup 61 220 100 0 14156 wm_rh_S_interm_prim-Jensen 141 60 20 0 14157 wm_rh_S_intrapariet_and_P_trans 143 20 220 0 14158 wm_rh_S_oc_middle_and_Lunatus 101 60 220 0 14159 wm_rh_S_oc_sup_and_transversal 21 20 140 0 14160 wm_rh_S_occipital_ant 61 20 180 0 14161 wm_rh_S_oc-temp_lat 221 140 20 0 14162 wm_rh_S_oc-temp_med_and_Lingual 141 100 220 0 14163 wm_rh_S_orbital_lateral 221 100 20 0 14164 wm_rh_S_orbital_med-olfact 181 200 20 0 14165 wm_rh_S_orbital-H_Shaped 101 20 20 0 14166 wm_rh_S_parieto_occipital 101 100 180 0 14167 wm_rh_S_pericallosal 181 220 20 0 14168 wm_rh_S_postcentral 21 140 200 0 14169 wm_rh_S_precentral-inf-part 21 20 240 0 14170 wm_rh_S_precentral-sup-part 21 20 200 0 14171 wm_rh_S_suborbital 21 20 60 0 14172 wm_rh_S_subparietal 101 60 60 0 14173 wm_rh_S_temporal_inf 21 180 180 0 14174 wm_rh_S_temporal_sup 223 220 60 0 14175 wm_rh_S_temporal_transverse 221 60 60 0 # Below are labels for the Yeo atlas (both 7 and 17) # https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011 15000 yeo7_lh_Unknown 0 0 0 0 15001 yeo7_lh_Net_1 120 18 134 0 15002 yeo7_lh_Net_2 70 130 180 0 15003 yeo7_lh_Net_3 0 118 14 0 15004 yeo7_lh_Net_4 196 58 250 0 15005 yeo7_lh_Net_5 220 248 164 0 15006 yeo7_lh_Net_6 230 148 34 0 15007 yeo7_lh_Net_7 205 62 78 0 15010 yeo7_rh_Net_Unknown 0 0 0 0 15011 yeo7_rh_Net_1 120 18 134 0 15012 yeo7_rh_Net_2 70 130 180 0 15013 yeo7_rh_Net_3 0 118 14 0 15014 yeo7_rh_Net_4 196 58 250 0 15015 yeo7_rh_Net_5 220 248 164 0 15016 yeo7_rh_Net_6 230 148 34 0 15017 yeo7_rh_Net_7 205 62 78 0 15100 yeo17_lh_Net_Unknown 0 0 0 0 15101 yeo17_lh_Net_1 120 18 134 0 15102 yeo17_lh_Net_2 255 0 0 0 15103 yeo17_lh_Net_3 70 130 180 0 15104 yeo17_lh_Net_4 42 204 164 0 15105 yeo17_lh_Net_5 74 155 60 0 15106 yeo17_lh_Net_6 0 118 14 0 15107 yeo17_lh_Net_7 196 58 250 0 15108 yeo17_lh_Net_8 255 152 213 0 15109 yeo17_lh_Net_9 220 248 164 0 15110 yeo17_lh_Net_10 122 135 50 0 15111 yeo17_lh_Net_11 119 140 176 0 15112 yeo17_lh_Net_12 230 148 34 0 15113 yeo17_lh_Net_13 135 50 74 0 15114 yeo17_lh_Net_14 12 48 255 0 15115 yeo17_lh_Net_15 0 0 130 0 15116 yeo17_lh_Net_16 255 255 0 0 15117 yeo17_lh_Net_17 205 62 78 0 15120 yeo17_rh_Net_Unknown 0 0 0 0 15121 yeo17_rh_Net_1 120 18 134 0 15122 yeo17_rh_Net_2 255 0 0 0 15123 yeo17_rh_Net_3 70 130 180 0 15124 yeo17_rh_Net_4 42 204 164 0 15125 yeo17_rh_Net_5 74 155 60 0 15126 yeo17_rh_Net_6 0 118 14 0 15127 yeo17_rh_Net_7 196 58 250 0 15128 yeo17_rh_Net_8 255 152 213 0 15129 yeo17_rh_Net_9 220 248 164 0 15130 yeo17_rh_Net_10 122 135 50 0 15131 yeo17_rh_Net_11 119 140 176 0 15132 yeo17_rh_Net_12 230 148 34 0 15133 yeo17_rh_Net_13 135 50 74 0 15134 yeo17_rh_Net_14 12 48 255 0 15135 yeo17_rh_Net_15 0 0 130 0 15136 yeo17_rh_Net_16 255 255 0 0 15137 yeo17_rh_Net_17 205 62 78 0