### A Pluto.jl notebook ### # v0.19.40 using Markdown using InteractiveUtils # This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error). macro bind(def, element) quote local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end local el = $(esc(element)) global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el) el end end # ╔═╡ 8cf4d8ca-84eb-11eb-22d2-255ce7237090 begin 🏁="🏁" using MITgcm, PlutoUI, Printf exps=verification_experiments() 🏁 end # ╔═╡ 6ef93b0e-859f-11eb-1b3b-d76b26d678dc begin md"""# How to compile and run MITgcm ### Here we use [MITgcm](https://mitgcm.readthedocs.io/en/latest/?badge=latest) interactively via [MITgcm.jl](https://gaelforget.github.io/MITgcm.jl/dev/) as needed in a typical modeling workflow. This includes compiling and running the model via the simple interface defined in [ClimateModels.jl](https://github.com/gaelforget/ClimateModels.jl). """ end # ╔═╡ 2b5e1c5c-933d-41a6-9cce-b6b848b591a9 md"""## Select model configuration: $(TableOfContents()) !!! note If you use a live version of this notebook, selecting a different configuration from the list below will make the other notebook cells react (e.g. displayed contents). If you visualize an html version of this notebook, then cells wont react. """ # ╔═╡ b59456f8-4610-4803-98f8-dc06115f2451 md"""Select one of the configurations listed in `verification_experiments()`. $(@bind myexp Select([exps[i].configuration for i in 1:length(exps)],default="advect_xy")) # Here is it's `MITgcm_config` data structure, `exps[iexp]` : """ # ╔═╡ 7fa8a460-89d4-11eb-19bb-bbacdd32719a begin iexp=findall([exps[i].configuration==myexp for i in 1:length(exps)])[1] exps[iexp] end # ╔═╡ d90039c4-85a1-11eb-0d82-77db4decaa6e md"""## Trigger individual operations: The workflow below consists in four steps: ```julia clean(exps[iexp]) setup(exps[iexp]) build(exps[iexp]) MITgcm.launch(exps[iexp]) ``` which can be triggered individually as shown below for the selected model configuration (**$myexp**). !!! tip Letting each operation complete before triggering another one may work best. """ # ╔═╡ 8569269c-859c-11eb-1ab1-2d874dfa741b @bind do_cleanup PlutoUI.Button("Clean up subfolders") # ╔═╡ f008ccaa-859c-11eb-1188-114843d333e6 let do_cleanup clean(exps[iexp]) 🏁 end # ╔═╡ 11b024ac-86d1-11eb-1db9-47a5e41398e3 @bind do_link PlutoUI.Button("Setup (e.g. link input files to run/ folder)") # ╔═╡ 31829f08-86d1-11eb-3e26-dfae038b4c01 let do_link setup(exps[iexp]) 🏁 end # ╔═╡ 76291182-86d1-11eb-1524-73dc02ca7b64 @bind do_build PlutoUI.Button("Build mitgcmuv") # ╔═╡ 848241fe-86d1-11eb-3b30-b94aa0b4431d let do_build build(exps[iexp],"--allow-skip") 🏁 end # ╔═╡ 5d826e4c-859d-11eb-133d-859c3abe3ebe @bind do_run PlutoUI.Button("Run mitgcmuv in run/ folder") # ╔═╡ 550d996a-859d-11eb-34bf-717389fbf809 let do_run MITgcm.launch(exps[iexp]) 🏁 end # ╔═╡ 3ff9f3f7-bc4f-4752-a7fc-e8cfcd59952d md""" ## A Quick Look at the Results Here are the files now found in the `run/` folder: """ # ╔═╡ a04c1cd6-3b9e-4e69-b986-c863b120bb0b begin do_cleanup; do_link; do_run; rundir=joinpath(exps[iexp].folder,string(exps[iexp].ID),"run") readdir(rundir) end # ╔═╡ baf468f8-4ae1-40d3-8077-91f81442d047 md"""### Appendices The following cells select Julia packages and perform basic operations. """ # ╔═╡ 173e97bb-711a-4d3c-8bd3-a9b1da1743d5 begin imgA="https://user-images.githubusercontent.com/20276764/111042787-12377e00-840d-11eb-8ddb-64cc1cfd57fd.png" imgB="https://user-images.githubusercontent.com/20276764/97648227-970b9780-1a2a-11eb-81c4-65ec2c87efc6.png" md"""$(Resource(imgB, :width => 120))""" end # ╔═╡ 00000000-0000-0000-0000-000000000001 PLUTO_PROJECT_TOML_CONTENTS = """ [deps] MITgcm = "dce5fa8e-68ce-4431-a242-9469c69627a0" PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8" Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised julia_version = "1.10.2" manifest_format = "2.0" project_hash = "83baa2a9b8d051e75ce0422818fcd94c578c0009" [[deps.AbstractPlutoDingetjes]] deps = ["Pkg"] git-tree-sha1 = "0f748c81756f2e5e6854298f11ad8b2dfae6911a" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.3.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.Blosc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10" uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9" version = "1.21.5+0" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+1" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] git-tree-sha1 = "a44910ceb69b0d44fe262dd451ab11ead3ed0be8" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.10.13" [[deps.CatViews]] deps = ["Random", "Test"] git-tree-sha1 = "23d1f1e10d4e24374112fcf800ac981d14a54b24" uuid = "81a5f4ea-a946-549a-aa7e-2a7f63a27d31" version = "1.0.0" [[deps.ClimateModels]] deps = ["CSV", "DataFrames", "Dates", "Downloads", "Git", "NetCDF", "OrderedCollections", "Pkg", "Statistics", "Suppressor", "TOML", "Test", "UUIDs"] git-tree-sha1 = "3b9f92f18ad145441752c80d0af59e254c3d2954" uuid = "f6adb021-9183-4f40-84dc-8cea6f651bb0" version = "0.3.2" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.4" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.4" [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.1.0+0" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" version = "0.18.18" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiskArrays]] deps = ["LRUCache", "OffsetArrays"] git-tree-sha1 = "ef25c513cad08d7ebbed158c91768ae32f308336" uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" version = "0.3.23" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.11" [deps.Distances.extensions] DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [deps.Distances.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.5.0+0" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" version = "0.9.21" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.FortranFiles]] git-tree-sha1 = "f8cec967f151a65f03afd826650c6e91d8b1da16" uuid = "c58ffaec-ab22-586d-bfc5-781a99fd0b10" version = "0.6.0" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" version = "6.2.1+6" [[deps.Git]] deps = ["Git_jll"] git-tree-sha1 = "04eff47b1354d702c3a85e8ab23d539bb7d5957e" uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" version = "1.3.1" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] git-tree-sha1 = "12945451c5d0e2d0dca0724c3a8d6448b46bbdf9" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" version = "2.44.0+1" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" [[deps.GnuTLS_jll]] deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"] git-tree-sha1 = "383db7d3f900f4c1f47a8a04115b053c095e48d3" uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d" version = "3.8.4+0" [[deps.HDF5_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739" uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" version = "1.14.2+1" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.10.0+0" [[deps.Hyperscript]] deps = ["Test"] git-tree-sha1 = "179267cfa5e712760cd43dcae385d7ea90cc25a4" uuid = "47d2ed2b-36de-50cf-bf87-49c2cf4b8b91" version = "0.0.5" [[deps.HypertextLiteral]] deps = ["Tricks"] git-tree-sha1 = "7134810b1afce04bbc1045ca1985fbe81ce17653" uuid = "ac1192a8-f4b3-4bfe-ba22-af5b92cd3ab2" version = "0.9.5" [[deps.IOCapture]] deps = ["Logging", "Random"] git-tree-sha1 = "8b72179abc660bfab5e28472e019392b97d0985c" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" version = "0.2.4" [[deps.InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" version = "1.4.0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" version = "1.5.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "15.0.7+0" [[deps.LRUCache]] git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" version = "1.6.1" weakdeps = ["Serialization"] [deps.LRUCache.extensions] SerializationExt = ["Serialization"] [[deps.LaTeXStrings]] git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.1" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "8.4.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" version = "1.6.4+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" version = "1.17.0+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = 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"3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" version = "0.1.10" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "77c3bd69fdb024d75af38713e883d0f249ce19c2" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" version = "5.3.2+0" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" [[deps.MeshArrays]] deps = ["CatViews", "Dates", "LazyArtifacts", "NearestNeighbors", "Pkg", "Printf", "SparseArrays", "Statistics", "Unitful"] git-tree-sha1 = "efe5af5a2eae46e697bb4afc21ffb13c6699d0ff" uuid = "cb8c808f-1acf-59a3-9d2b-6e38d009f683" version = "0.3.2" [deps.MeshArrays.extensions] MeshArraysDownloadsExt = ["Downloads"] MeshArraysGeoJSONExt = ["GeoJSON"] MeshArraysJLD2Ext = ["JLD2"] MeshArraysMakieExt = ["Makie"] MeshArraysProjExt = 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"Parsers"] git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.12.6+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" version = "5.4.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.6+0" [[deps.libaec_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" version = "1.1.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" [[deps.libevent_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll"] git-tree-sha1 = "f04ec6d9a186115fb38f858f05c0c4e1b7fc9dcb" uuid = "1080aeaf-3a6a-583e-a51c-c537b09f60ec" version = "2.1.13+1" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "3282b7d16ae7ac3e57ec2f3fa8fafb564d8f9f7f" uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" version = "1.10.1+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.prrte_jll]] deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "Libdl", "PMIx_jll", "libevent_jll"] git-tree-sha1 = "5adb2d7a18a30280feb66cad6f1a1dfdca2dc7b0" uuid = "eb928a42-fffd-568d-ab9c-3f5d54fc65b9" version = "3.0.2+0" """ # ╔═╡ Cell order: # ╟─6ef93b0e-859f-11eb-1b3b-d76b26d678dc # ╟─2b5e1c5c-933d-41a6-9cce-b6b848b591a9 # ╟─b59456f8-4610-4803-98f8-dc06115f2451 # ╟─7fa8a460-89d4-11eb-19bb-bbacdd32719a # ╟─d90039c4-85a1-11eb-0d82-77db4decaa6e # ╟─8569269c-859c-11eb-1ab1-2d874dfa741b # ╟─f008ccaa-859c-11eb-1188-114843d333e6 # ╟─11b024ac-86d1-11eb-1db9-47a5e41398e3 # ╟─31829f08-86d1-11eb-3e26-dfae038b4c01 # ╟─76291182-86d1-11eb-1524-73dc02ca7b64 # ╟─848241fe-86d1-11eb-3b30-b94aa0b4431d # ╟─5d826e4c-859d-11eb-133d-859c3abe3ebe # ╟─550d996a-859d-11eb-34bf-717389fbf809 # ╟─3ff9f3f7-bc4f-4752-a7fc-e8cfcd59952d # ╟─a04c1cd6-3b9e-4e69-b986-c863b120bb0b # ╟─baf468f8-4ae1-40d3-8077-91f81442d047 # ╟─8cf4d8ca-84eb-11eb-22d2-255ce7237090 # ╟─173e97bb-711a-4d3c-8bd3-a9b1da1743d5 # ╟─00000000-0000-0000-0000-000000000001 # ╟─00000000-0000-0000-0000-000000000002