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.*data_manager_eggnog_mapper_abspath.*: cores: 5 .*data_manager_funannotate.*: cores: 1 mem: 64 .*data_manager_gemini_download.*: mem: 20 .*data_manager_humann2_database_downloader.*: cores: 5 .*data_manager_humann2_download.*: mem: 25 .*data_manager_humann_database_downloader.*: cores: 5 .*data_manager_interproscan.*: cores: 5 .*data_manager_metaphlan_download.*: cores: 12 mem: 92 .*data_manager_snpeff_databases.*: mem: 12 .*data_manager_snpeff_download.*: mem: 12 .*diamond_database_builder.*: cores: 10 mem: 90 .*gatk_picard_index_builder.*: mem: 12 .*hisat2_index_builder_data_manager.*: cores: 10 mem: 180 .*kallisto_index_builder_data_manager.*: cores: 12 mem: 92 .*kraken2_build_database.*: cores: 16 .*kraken_database_builder.*: mem: 200 .*picard_index_builder_data_manager.*: mem: 12 .*prokaryotic_ncbi_submission.*: cores: 24 mem: 24 .*rna_star_index_builder_data_manager.*: cores: 10 mem: 300 .*salmon_index_builder_data_manager.*: cores: 12 mem: 92 .*twobit_builder_data_manager.*: cores: 16 mem: 36 CONVERTER_bedgraph_to_bigwig: mem: 8 Extract genomic DNA 1: cores: 3 bfast_wrapper: cores: 10 mem: 20 bgchem_fragment_merger: cores: 10 mem: 40 bwtool-lift: mem: 80 join1: mem: 18 re_he_maldi_image_registration: mem: 48 tombo_detect_modifications: cores: 10 mem: 32 tombo_resquiggle: cores: 10 mem: 32 wig_to_bigWig: mem: 10 destinations: default: params: tpv_cores: '{cores}' tpv_gpus: '{gpus}' tpv_mem: '{mem}' abstract: true tpvdb_slurm: context: slurm_walltime: '' slurm_partition: '' slurm_account: '' params: native_specification: | --nodes=1 --ntasks={cores} --mem={round(mem*1024)} {'--time='+ slurm_walltime if slurm_walltime else ''} {'--gres=gres:gpu:' + str(gpus) if gpus else ''} {'--partition=' + slurm_partition if slurm_partition else ''} {'--account=' + slurm_account if slurm_account else ''} abstract: true