{ "cells": [ { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ " **[MSE672: Introduction to TEM](https://gduscher.github.io/MSE672-Introduction-to-TEM/)** \n", "\n", "
\n", "\n", "# Course Organization\n", "\n", "[Download](https://raw.githubusercontent.com/gduscher/MSE672-Introduction-to-TEM//main/Introduction/CH1_05-Course_Organization.ipynb)\n", " \n", "[![OpenInColab](https://colab.research.google.com/assets/colab-badge.svg)](\n", " https://colab.research.google.com/github/gduscher/MSE672-Introduction-to-TEM/blob/main/Introduction/CH1_05-Course_Organization.ipynb)\n", "\n", "part of\n", "\n", " **[MSE672: Introduction to Transmission Electron Microscopy](../_MSE672_Intro_TEM.ipynb)**\n", "\n", "**Spring 2026**
\n", "by Gerd Duscher\n", "\n", "Microscopy Facilities
\n", "Institute of Advanced Materials & Manufacturing
\n", "Materials Science & Engineering
\n", "The University of Tennessee, Knoxville\n" ] }, { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ "## Books\n", "### Williams and Carter\n", "**Transmission Electron Microscopy**\n", "\n", "Plenum Press, 2009 (2nd Edition).\n", "\n", "[available online at the library](https://link-springer-com.utk.idm.oclc.org/book/10.1007%2F978-0-387-76501-3)\n", "\n", "### Reimer and Kohl\n", "**Transmission Electron Microscopy**\n", "\n", "Springer, Berlin, 2007 (5th Edition).
\n", "\n", "[available online at the library](https://link-springer-com.utk.idm.oclc.org/book/10.1007%2F978-0-387-40093-8)\n", "\n", "### Zuo and Spence\n", "\n", "**Electron Microdiffraction **\n", "\n", "Springer, NewYork, 2017
\n", "\n", "[available online at the library](https://link-springer-com.utk.idm.oclc.org/book/10.1007%2F978-1-4899-2353-0)\n", "\n", "### Kirkland\n", "**Advanced Computing in Electron Microscopy**\n", "\n", "Springer, NewYork, 2010 (2nd Edition)
\n", "\n", "[available online at the library](https://link-springer-com.utk.idm.oclc.org/book/10.1007%2F978-1-4419-6533-2)\n", "\n", "### R.F. Egerton\n", "\n", "**Electron Energy-Loss Spectroscopy in the Electron Microscope**\n", "\n", "Plenum Press, 2011 (3rd Edition)
\n", "\n", "[available online at the library](https://link-springer-com.utk.idm.oclc.org/book/10.1007%2F978-1-4419-9583-4)\n" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Software\n", "\n", "### Image Analysis software for SEM and TEM\n", "\n", "#### Digital Micrograph\n", "You can get a free offline license from [Gatan](https://www.gatan.com/resources/scripting/demo/) \n", "\n", "#### ImageJ\n", "a free imaging software with a lot of plugins: download from [NIH](https://rsbweb.nih.gov/ij/)\n", "\n", "#### jupyter notebooks\n", "use provided [notebooks](https://github.com/gduscher/MSE672-Introduction-to-TEM)" ] }, { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ "## Syllabus 2026\n", "\n", "| Week | Lecture | Chp. | Lab |\n", "|------|---------|------|-----|\n", "|01/19 - 01/25 | 1,2:Introduction, Geometric Ray Optics | 1 | |\n", "|01/26 - 02/01 | 3,4: Kinematic Diffraction | 2,11 | |\n", "|02/02 - 02/08 | 5,6:Kinematic Diffraction -parallel | 12 | Lab1: Basic Imaging|\n", "|02/09 - 02/15 | 7,8:Kinematic Diffraction -convergent | 19,20 | Lab2: Basic Diffraction|\n", "|02/16 - 02/22 | 9,10:Dynamic Diffraction | 14,15 | Lab3: SAED |\n", "|02/23 - 03/01 | 11,12:Imaging Overview | 22 | Lab4: CBED |\n", "|03/02 - 03/08 | 13,14:Imaging Conventional | 24-27 | Lab5: Phase Contrast|\n", "|03/09 - 03/15 | 15,16:Imaging Phase Contrast | 28,30 | Lab6: CTF|\n", "|03/16 - 03/22 | Spring Break| | Spring Break|\n", "|03/23 - 03/29 | 17,18:Imaging and Lens Aberrations | 31 | Lab6: Exam Preparation |\n", "|03/30 - 04/05 | 19 :Imaging Z-contrast| - |Exam |\n", "|04/06 - 04/12 | 20,21:Spectroscopy EELS | 36-40 | Lab7: Z-contrast|\n", "|04/13 - 04/19 | 22,23:Spectroscopy EDS | 33-35 | Lab8: EELS, ESI|\n", "|04/20 - 04/26 | 24:Other Techniques | 29 ||\n", "|04/27 - 05/02 | 25,26: TEM parts and vacuum | 5-9 ||\n", "|05/04 - | 28:Project discussion ||" ] }, { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ "## Office Hours\n", "Office hours are Thursday from 4 -- 5pm \n", "online with the class zoom link.\n", "\n", "I will answer email questions in the same time slots.\n", "\n", "## Class and Lab\n", "- Parallel to the class there is a Lab (MSE676) course.\n", "- We will analyze the data of the lab course, independent of whether you are participating or not,\n", "- For the analysis of the data we will need a labtop in class.\n", "\n", "- Everyone needs a laptop in class\n", "- I need real feedback on what you guys want to do and need to learn." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Homework and Quizzes\n", "- Homeworks and Quizzes are the main way to determine your grade in this course.\n", "- Homeworks have to be submitted electronically through Canvas and generally are about analyzing on your own data which are similar to those in the practice sessions.\n", "- Think of these homeworks as small take-home exams.\n", "- Additionally, there will be reading assignments every week.\n", "- Each week before the lecture, there will be a short quiz about the content of the reading assignments.\n", "- Neither the TA nor the instructor will answer questions about your homework after the deadline.\n", "- If you are more than two homeworks behind, you failed the class." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Final\n", "The final is a report of how TEM will/can be used in your research.\n", "\n", "This should be based on a critical review of a journal article which did TEM similar to what you propose." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Grades\n", "The grade is a determined by 1/3 each: final, homework, and quizzes." ] }, { "cell_type": "code", "execution_count": null, "metadata": { "pycharm": { "name": "#%%\n" } }, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.13.5" }, "toc": { "base_numbering": "5", "nav_menu": {}, "number_sections": true, "sideBar": true, "skip_h1_title": false, "title_cell": "Table of Contents", "title_sidebar": "Contents", "toc_cell": false, "toc_position": {}, "toc_section_display": true, "toc_window_display": true } }, "nbformat": 4, "nbformat_minor": 4 }