upa.owl
type: Ontology
version IRI: upa.owl
date: 21:07:2015 00:00
default-namespace: unipathway_ontology
has_obo_format_version: 1.2
comment: UniPathway Release 2015_03

definition
type: AnnotationProperty
IAO_0000114: IAO_0000122

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

FORMULA
type: AnnotationProperty
sub property of: synonym_type_property

InChI
type: AnnotationProperty
sub property of: synonym_type_property

UniProt super-pathway
type: AnnotationProperty
has_obo_namespace: unipathway_ontology
id: uniprot_super_pathway
is class level: true
is metadata tag: true

synonym_type_property
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

id
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
IAO_0000111: is part of
IAO_0000112: my brain is part of my body (continuant parthood, two material entities)
IAO_0000112: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
IAO_0000112: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
IAO_0000116: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
IAO_0000118: part_of
RO_0001900: RO_0001901
database_cross_reference: BFO:0000050
has_obo_namespace: unipathway_ontology
id: part_of
shorthand: part_of

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
IAO_0000111: has part
IAO_0000112: my body has part my brain (continuant parthood, two material entities)
IAO_0000112: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
IAO_0000112: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
IAO_0000116: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
IAO_0000118: has_part
RO_0001900: RO_0001901

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000116: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
IAO_0000118: is preceded by
IAO_0000118: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
database_cross_reference: BFO:0000062
has_obo_namespace: unipathway_ontology
id: preceded_by
in subset: ro-eco
shorthand: preceded_by

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in subset: ro-eco

occurs in
type: ObjectProperty
inverse of: contains process
domain: occurrent
range: independent continuant
property chain axiom: part of
IAO_0000111: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
IAO_0000118: occurs_in
IAO_0000118: unfolds in
IAO_0000118: unfolds_in
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
IAO_0000111: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

participates in
type: ObjectProperty
inverse of: has participant
domain: continuant
range: occurrent
IAO_0000111: participates in
IAO_0000112: this blood clot participates in this blood coagulation
IAO_0000112: this input material (or this output material) participates in this process
IAO_0000112: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
IAO_0000118: participates_in

has participant
type: ObjectProperty
domain: occurrent
range: continuant
property chain axiom: has part
IAO_0000111: has participant
IAO_0000112: this blood coagulation has participant this blood clot
IAO_0000112: this investigation has participant this investigator
IAO_0000112: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
IAO_0000116: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
IAO_0000118: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: dos
creation date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: dos
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: dos
creation date: 2017-05-24T09:49:21Z

has ligand
type: ObjectProperty
sub property of: has input
domain: GO_0004872
definition: A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.
created by: dos
creation date: 2017-07-19T17:30:36Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: dos
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
database_cross_reference: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
database_cross_reference: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
database_cross_reference: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulates
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: dos
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
database_cross_reference: GOC:dos

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
IAO_0000117: David Osumi-Sutherland
IAO_0000118: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: precedes
IAO_0000117: David Osumi-Sutherland
IAO_0000118: ends_at_start_of
IAO_0000118: meets
RO_0002575: precedes
in subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
property chain axiom: part of
property chain axiom: has part
IAO_0000114: IAO_0000125
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

has component
type: ObjectProperty
sub property of: has part
IAO_0000114: IAO_0000125
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
IAO_0000116: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
IAO_0000232: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
RO_0001900: RO_0001901
in subset: ro-eco

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: directly regulates
IAO_0000114: IAO_0000125
definition: process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
IAO_0000116: We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
IAO_0000117: Chris Mungall
IAO_0000117: David Hill
IAO_0000117: Tanya Berardini
IAO_0000119: causal-relations
IAO_0000119: GO
IAO_0000232: Regulation precludes parthood; the regulatory process may not be within the regulated process.
IAO_0000589: regulates (processual)
IAO_0000600: false

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
definition: Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: negatively regulates (process to process)
RO_0004050: regulates

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
definition: Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: positively regulates (process to process)
RO_0004049: regulates

capable of
type: ObjectProperty
sub property of: capable of part of
domain: independent continuant
range: process
IAO_0000112: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
IAO_0000112: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
IAO_0000117: Chris Mungall
IAO_0000118: has function realized in
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20123131
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
IAO_0000424: RO_0000053 some (RO_0000054 only ?Y)
in subset: ro-eco

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
IAO_0000117: Chris Mungall
IAO_0000118: has function in
IAO_0000424: RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

actively participates in
type: ObjectProperty
sub property of: participates in
inverse of: has active participant
definition: x actively participates in y if and only if x participates in y and x realizes some active role
IAO_0000117: Chris Mungall
IAO_0000118: agent in

has active participant
type: ObjectProperty
sub property of: has participant
IAO_0000112: 'heart development' has active participant some Shh protein
IAO_0000114: IAO_0000125
definition: x has participant y if and only if x realizes some active role that inheres in y
IAO_0000116: This may be obsoleted and replaced by the original 'has agent' relation
IAO_0000117: Chris Mungall
IAO_0000118: has agent
in subset: ro-eco

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
IAO_0000114: IAO_0000125
IAO_0000117: Chris Mungall
IAO_0000119: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
range: material entity
IAO_0000114: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
IAO_0000117: Chris Mungall
IAO_0000118: consumes
database_cross_reference: RO:0002233
has_obo_namespace: unipathway_ontology
id: has_input_compound
in subset: ro-eco
shorthand: has_input_compound

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
IAO_0000114: IAO_0000125
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.
IAO_0000117: Chris Mungall
IAO_0000118: produces
database_cross_reference: RO:0002234
has_obo_namespace: unipathway_ontology
id: has_output_compound
in subset: ro-eco
shorthand: has_output_compound

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
IAO_0000112: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
IAO_0000112: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
RO_0004049: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
RO_0004050: causally upstream of
creator: cjm
comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
RO_0001900: RO_0001901

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
IAO_0000112: a particular instances of akt-2 enables some instance of protein kinase activity
IAO_0000117: Chris Mungall
IAO_0000118: catalyzes
IAO_0000118: executes
IAO_0000118: has
IAO_0000118: is catalyzing
IAO_0000118: is executing
IAO_0000232: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
IAO_0000232: This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
IAO_0000117: Chris Mungall
IAO_0000232: This is a grouping relation that collects relations used for the purpose of connecting structure and function

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
IAO_0000117: Chris Mungall
IAO_0000118: false

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
is a defining property chain axiom: true

involved in
type: ObjectProperty
sub property of: actively participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
IAO_0000117: Chris Mungall
IAO_0000118: actively involved in
IAO_0000118: enables part of

enabled by
type: ObjectProperty
sub property of: functionally related to
definition: inverse of enables
IAO_0000117: Chris Mungall

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
IAO_0000117: Chris Mungall
IAO_0000589: regulated by (processual)
in subset: RO_0002259

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
IAO_0000117: Chris Mungall
in subset: RO_0002259

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
IAO_0000117: Chris Mungall
in subset: RO_0002259

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has input
IAO_0000117: Chris Mungall
in subset: RO_0002259
in subset: ro-eco

output of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has output
IAO_0000117: Chris Mungall
in subset: RO_0002259
in subset: ro-eco

causally downstream of
type: ObjectProperty
sub property of: preceded by
sub property of: causally downstream of or within
inverse of: causally upstream of
IAO_0000114: IAO_0000428
definition: inverse of upstream of
IAO_0000117: Chris Mungall

immediately causally downstream of
type: ObjectProperty
sub property of: immediately preceded by
sub property of: causally downstream of
inverse of: immediately causally upstream of
IAO_0000114: IAO_0000428
IAO_0000117: Chris Mungall

causally related to
type: ObjectProperty
IAO_0000114: IAO_0000428
definition: This relation groups causal relations between material entities and causal relations between processes
IAO_0000116: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yiel…
IAO_0000117: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
IAO_0000114: IAO_0000428
definition: p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
IAO_0000117: Chris Mungall

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
IAO_0000114: IAO_0000428
definition: p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
IAO_0000117: Chris Mungall
RO_0002575: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
IAO_0000116: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
IAO_0000117: Chris Mungall
IAO_0000118: influences (processual)
has_related_synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
in subset: RO_0002259

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
IAO_0000117: Chris Mungall

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
IAO_0000117: Chris Mungall
RO_0004049: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
IAO_0000117: Chris Mungall
RO_0004050: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
IAO_0000116: OWL does not allow defining object properties via a Union
IAO_0000117: Chris Mungall
IAO_0000118: involved in or reguates

is active in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
IAO_0000112: A protein that enables activity in a cytosol.
definition: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
IAO_0000117: Chris Mungall
IAO_0000118: executes activity in
has_exact_synonym: enables activity in

Axiom
annotated source: is active in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: is active in
annotated property: definition
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
database_cross_reference: GOC:cjm
database_cross_reference: GOC:dos

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
IAO_0000116: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
IAO_0000116: Considering relabeling as 'pairwise interacts with'
IAO_0000117: Chris Mungall
IAO_0000232: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has_exact_synonym: in pairwise interaction with
in subset: ro-eco

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
IAO_0000117: Chris Mungall
IAO_0000118: binds
IAO_0000118: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
IAO_0000116: Axiomatization to GO to be added later
IAO_0000117: Chris Mungall
IAO_0000118: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

activity directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: causally influences
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
IAO_0000117: Chris Mungall
has_exact_synonym: molecularly controls

activity directly negatively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
IAO_0000117: Chris Mungall
IAO_0000118: inhibits
has_exact_synonym: molecularly decreases activity of

activity directly positively regulates activity of
type: ObjectProperty
sub property of: activity directly regulates activity of
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
IAO_0000117: Chris Mungall
IAO_0000118: activates
has_exact_synonym: molecularly increases activity of

helper property (not for use in curation)
type: ObjectProperty
IAO_0000114: IAO_0000428
IAO_0000117: Chris Mungall
IAO_0000232: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has part
property chain axiom: occurs in
definition: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
IAO_0000117: Chris Mungall
in subset: ro-eco

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
is a defining property chain axiom: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
IAO_0000117: Chris Mungall

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
IAO_0000119: causal-relations

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causal relation between material entities
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: material entity
IAO_0000116: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally influenced by
type: ObjectProperty
sub property of: causal relation between material entities
inverse of: causally influences
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: causally influenced by (material entity to material entity)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
IAO_0000117: Chris Mungall

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
IAO_0000117: Chris Mungall

causally influences
type: ObjectProperty
sub property of: causal relation between material entities
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: causally influences (material entity to material entity)

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
definition: Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations
IAO_0000589: directly regulates (processual)
RO_0002575: regulates

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
IAO_0000112: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
IAO_0000117: Chris Mungall

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
IAO_0000116: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
IAO_0000117: Chris Mungall
IAO_0000119: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: regulates
IAO_0000112: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
IAO_0000119: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
IAO_0000119: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
IAO_0000112: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
IAO_0000119: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
IAO_0000119: causal-relations

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.
IAO_0000119: causal-relations
IAO_0000589: directly positively regulates (process to process)
RO_0004049: directly regulates

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.
IAO_0000119: causal-relations
IAO_0000589: directly negatively regulates (process to process)
RO_0004050: directly regulates

produces
type: ObjectProperty
inverse of: produced by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
IAO_0000114: IAO_0000125
definition: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
IAO_0000117: Melissa Haendel
in subset: ro-eco
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced by
type: ObjectProperty
domain: material entity
range: material entity
IAO_0000114: IAO_0000125
definition: a produced_by b iff some process that occurs_in b has_output a.
IAO_0000117: Melissa Haendel
in subset: ro-eco

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has part
definition: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created by: cjm
creation date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
RO_0004049: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:30Z

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
RO_0004050: acts upstream of or within
created by: cjm
creation date: 2018-01-26T23:49:51Z

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
RO_0004049: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:14Z

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
RO_0004050: acts upstream of
created by: cjm
creation date: 2018-01-26T23:53:22Z

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004050: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004049: causally upstream of or within
created by: cjm
creation date: 2018-03-13T23:55:19Z

has connecting compound
type: ObjectProperty
has_obo_namespace: unipathway_ontology
id: has_connecting_compound

continuant
type: Class
subclass of: Thing
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.

occurrent
type: Class
subclass of: Thing
disjoint with: Restriction
  on property: part of
  some values from: continuant
definition: An entity that has temporal parts and that happens, unfolds or develops through time.

independent continuant
type: Class
subclass of: continuant
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

process
type: Class
subclass of: occurrent
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

material entity
type: Class
subclass of: independent continuant
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.

molecular_function
type: Class
subclass of: process
IAO_0000589: molecular process

catalytic activity
type: Class
subclass of: molecular_function

biological_process
type: Class
subclass of: process

kinase activity
type: Class
subclass of: transferase activity, transferring phosphorus-containing groups
subclass of: Restriction
  on property: is kinase activity
  has self: true

transferase activity
type: Class
subclass of: catalytic activity

transferase activity, transferring phosphorus-containing groups
type: Class
subclass of: transferase activity

reaction
type: Class
subclass of: Thing
definition: A chemical reaction involved in a UniPathway pathway.
database_cross_reference: GO:0003824
has_obo_namespace: reaction
id: UPa:UCR00000

H(2)O + urea-1-carboxylate = 2 CO(2) + 2 NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00372
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
database_cross_reference: KEGG:R00005
database_cross_reference: METACYC:ALLOPHANATE-HYDROLASE-RXN
database_cross_reference: RHEA:19032
has_obo_namespace: reaction
id: UPa:UCR00005

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00372

Axiom
annotated source: H(2)O + urea-1-carboxylate = 2 CO(2) + 2 NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + urea-1-carboxylate = 2 CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00005

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + urea-1-carboxylate = 2 CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: METACYC:ALLOPHANATE-HYDROLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + urea-1-carboxylate = 2 CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: RHEA:19032

H(2)O + alpha,alpha-trehalose = 2 D-glucose
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00535
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01083
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00031
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01083
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00031
database_cross_reference: KEGG:R00010
database_cross_reference: METACYC:TREHALA-RXN
database_cross_reference: RHEA:20871
database_cross_reference: RHEA:32678
has_obo_namespace: reaction
id: UPa:UCR00010

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00535

Axiom
annotated source: H(2)O + alpha,alpha-trehalose = 2 D-glucose
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + alpha,alpha-trehalose = 2 D-glucose
annotated property: database_cross_reference
annotated target: KEGG:R00010

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + alpha,alpha-trehalose = 2 D-glucose
annotated property: database_cross_reference
annotated target: METACYC:TREHALA-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + alpha,alpha-trehalose = 2 D-glucose
annotated property: database_cross_reference
annotated target: RHEA:20871

Rhea reaction
type: Axiom
annotated source: H(2)O + alpha,alpha-trehalose = 2 D-glucose
annotated property: database_cross_reference
annotated target: RHEA:32678

2 glyoxylate = 2-hydroxy-3-oxopropanoate + CO(2)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00831
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01146
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00048
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01146
database_cross_reference: KEGG:R00013
database_cross_reference: METACYC:GLYOCARBOLIG-RXN
database_cross_reference: RHEA:10139
has_obo_namespace: reaction
id: UPa:UCR00013

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00831

Axiom
annotated source: 2 glyoxylate = 2-hydroxy-3-oxopropanoate + CO(2)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 glyoxylate = 2-hydroxy-3-oxopropanoate + CO(2)
annotated property: database_cross_reference
annotated target: KEGG:R00013

MetaCyc REACTION
type: Axiom
annotated source: 2 glyoxylate = 2-hydroxy-3-oxopropanoate + CO(2)
annotated property: database_cross_reference
annotated target: METACYC:GLYOCARBOLIG-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 glyoxylate = 2-hydroxy-3-oxopropanoate + CO(2)
annotated property: database_cross_reference
annotated target: RHEA:10139

pyruvate + thiamine diphosphate = 2-hydroxyethyl-ThPP + CO(2)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00059
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00068
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC05125
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00068
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC05125
database_cross_reference: KEGG:R00014
database_cross_reference: METACYC:RXN-12583
has_obo_namespace: reaction
id: UPa:UCR00014

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00059

Axiom
annotated source: pyruvate + thiamine diphosphate = 2-hydroxyethyl-ThPP + CO(2)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: pyruvate + thiamine diphosphate = 2-hydroxyethyl-ThPP + CO(2)
annotated property: database_cross_reference
annotated target: KEGG:R00014

MetaCyc REACTION
type: Axiom
annotated source: pyruvate + thiamine diphosphate = 2-hydroxyethyl-ThPP + CO(2)
annotated property: database_cross_reference
annotated target: METACYC:RXN-12583
source: MetaCyc

2 L-glutamate + 2 oxidized ferredoxin = 2-oxoglutarate + 2 H(+) + L-glutamine + 2 reduced ferredoxin
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00691
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00139
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00138
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00139
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00138
database_cross_reference: KEGG:R00021
database_cross_reference: METACYC:GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
database_cross_reference: RHEA:12131
has_obo_namespace: reaction
id: UPa:UCR00021

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00691

Axiom
annotated source: 2 L-glutamate + 2 oxidized ferredoxin = 2-oxoglutarate + 2 H(+) + L-glutamine + 2 reduced ferredoxin
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2 L-glutamate + 2 oxidized ferredoxin = 2-oxoglutarate + 2 H(+) + L-glutamine + 2 reduced ferredoxin
annotated property: database_cross_reference
annotated target: KEGG:R00021

MetaCyc REACTION
type: Axiom
annotated source: 2 L-glutamate + 2 oxidized ferredoxin = 2-oxoglutarate + 2 H(+) + L-glutamine + 2 reduced ferredoxin
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 L-glutamate + 2 oxidized ferredoxin = 2-oxoglutarate + 2 H(+) + L-glutamine + 2 reduced ferredoxin
annotated property: database_cross_reference
annotated target: RHEA:12131

2 5-aminolevulinate = 2 H(2)O + porphobilinogen
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00318
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00430
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00931
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00430
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00931
database_cross_reference: KEGG:R00036
database_cross_reference: METACYC:PORPHOBILSYNTH-RXN
database_cross_reference: RHEA:24067
has_obo_namespace: reaction
id: UPa:UCR00036

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00318

Axiom
annotated source: 2 5-aminolevulinate = 2 H(2)O + porphobilinogen
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 5-aminolevulinate = 2 H(2)O + porphobilinogen
annotated property: database_cross_reference
annotated target: KEGG:R00036

MetaCyc REACTION
type: Axiom
annotated source: 2 5-aminolevulinate = 2 H(2)O + porphobilinogen
annotated property: database_cross_reference
annotated target: METACYC:PORPHOBILSYNTH-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2 5-aminolevulinate = 2 H(2)O + porphobilinogen
annotated property: database_cross_reference
annotated target: RHEA:24067

2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-(D-ribitylamino)uracil + riboflavin
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00405
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04332
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00255
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04732
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04332
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00255
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04732
database_cross_reference: KEGG:R00066
database_cross_reference: METACYC:RIBOFLAVIN-SYN-RXN
database_cross_reference: RHEA:20775
has_obo_namespace: reaction
id: UPa:UCR00066

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00405

Axiom
annotated source: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-(D-ribitylamino)uracil + riboflavin
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-(D-ribitylamino)uracil + riboflavin
annotated property: database_cross_reference
annotated target: KEGG:R00066

MetaCyc REACTION
type: Axiom
annotated source: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-(D-ribitylamino)uracil + riboflavin
annotated property: database_cross_reference
annotated target: METACYC:RIBOFLAVIN-SYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = 5-amino-6-(D-ribitylamino)uracil + riboflavin
annotated property: database_cross_reference
annotated target: RHEA:20775

H(2)O + 4 porphobilinogen = 4 NH(3) + hydroxymethylbilane
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00319
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00931
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00931
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01024
database_cross_reference: KEGG:R00084
database_cross_reference: METACYC:OHMETHYLBILANESYN-RXN
database_cross_reference: RHEA:13188
has_obo_namespace: reaction
id: UPa:UCR00084

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00319

Axiom
annotated source: H(2)O + 4 porphobilinogen = 4 NH(3) + hydroxymethylbilane
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + 4 porphobilinogen = 4 NH(3) + hydroxymethylbilane
annotated property: database_cross_reference
annotated target: KEGG:R00084

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + 4 porphobilinogen = 4 NH(3) + hydroxymethylbilane
annotated property: database_cross_reference
annotated target: METACYC:OHMETHYLBILANESYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + 4 porphobilinogen = 4 NH(3) + hydroxymethylbilane
annotated property: database_cross_reference
annotated target: RHEA:13188

2 L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + L-glutamine + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00690
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00093
database_cross_reference: METACYC:GLUTAMATE-SYNTHASE-NADH-RXN
database_cross_reference: RHEA:13756
has_obo_namespace: reaction
id: UPa:UCR00093

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00690

Axiom
annotated source: 2 L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + L-glutamine + NADH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2 L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + L-glutamine + NADH
annotated property: database_cross_reference
annotated target: KEGG:R00093

MetaCyc REACTION
type: Axiom
annotated source: 2 L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + L-glutamine + NADH
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMATE-SYNTHASE-NADH-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + L-glutamine + NADH
annotated property: database_cross_reference
annotated target: RHEA:13756

2 L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + L-glutamine + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00689
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00114
database_cross_reference: METACYC:GLUTAMATESYN-RXN
database_cross_reference: RHEA:15504
has_obo_namespace: reaction
id: UPa:UCR00114

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00689

Axiom
annotated source: 2 L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + L-glutamine + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2 L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + L-glutamine + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00114

MetaCyc REACTION
type: Axiom
annotated source: 2 L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + L-glutamine + NADPH
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMATESYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + L-glutamine + NADPH
annotated property: database_cross_reference
annotated target: RHEA:15504

AMP + ATP = 2 ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00649
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
database_cross_reference: KEGG:R00127
database_cross_reference: METACYC:ADENYL-KIN-RXN
database_cross_reference: RHEA:12976
has_obo_namespace: reaction
id: UPa:UCR00127

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00649

Axiom
annotated source: AMP + ATP = 2 ADP
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: AMP + ATP = 2 ADP
annotated property: database_cross_reference
annotated target: KEGG:R00127

MetaCyc REACTION
type: Axiom
annotated source: AMP + ATP = 2 ADP
annotated property: database_cross_reference
annotated target: METACYC:ADENYL-KIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: AMP + ATP = 2 ADP
annotated property: database_cross_reference
annotated target: RHEA:12976

3'-dephospho-CoA + ATP = ADP + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00356
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00882
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00882
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
database_cross_reference: KEGG:R00130
database_cross_reference: METACYC:DEPHOSPHOCOAKIN-RXN
database_cross_reference: RHEA:18248
has_obo_namespace: reaction
id: UPa:UCR00130

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00356

Axiom
annotated source: 3'-dephospho-CoA + ATP = ADP + CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3'-dephospho-CoA + ATP = ADP + CoA
annotated property: database_cross_reference
annotated target: KEGG:R00130

MetaCyc REACTION
type: Axiom
annotated source: 3'-dephospho-CoA + ATP = ADP + CoA
annotated property: database_cross_reference
annotated target: METACYC:DEPHOSPHOCOAKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3'-dephospho-CoA + ATP = ADP + CoA
annotated property: database_cross_reference
annotated target: RHEA:18248

H(2)O + urea = CO(2) + 2 NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00370
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00086
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00086
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
database_cross_reference: KEGG:R00131
database_cross_reference: METACYC:UREASE-RXN
database_cross_reference: RHEA:20560
has_obo_namespace: reaction
id: UPa:UCR00131

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00370

Axiom
annotated source: H(2)O + urea = CO(2) + 2 NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + urea = CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00131

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + urea = CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: METACYC:UREASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + urea = CO(2) + 2 NH(3)
annotated property: database_cross_reference
annotated target: RHEA:20560

ATP + nicotinamide D-ribonucleotide = NAD(+) + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00600
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00455
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00455
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
database_cross_reference: KEGG:R00137
database_cross_reference: METACYC:2.7.7.1-RXN
database_cross_reference: RHEA:21363
has_obo_namespace: reaction
id: UPa:UCR00137

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00600

Axiom
annotated source: ATP + nicotinamide D-ribonucleotide = NAD(+) + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + nicotinamide D-ribonucleotide = NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00137

MetaCyc REACTION
type: Axiom
annotated source: ATP + nicotinamide D-ribonucleotide = NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:2.7.7.1-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + nicotinamide D-ribonucleotide = NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:21363

ATP + CO(2) + NH(3) = ADP + carbamoyl phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00366
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00169
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00169
database_cross_reference: KEGG:R00150
database_cross_reference: METACYC:CARBAMATE-KINASE-RXN
database_cross_reference: RHEA:10155
has_obo_namespace: reaction
id: UPa:UCR00150

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00366

Axiom
annotated source: ATP + CO(2) + NH(3) = ADP + carbamoyl phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + CO(2) + NH(3) = ADP + carbamoyl phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00150

MetaCyc REACTION
type: Axiom
annotated source: ATP + CO(2) + NH(3) = ADP + carbamoyl phosphate
annotated property: database_cross_reference
annotated target: METACYC:CARBAMATE-KINASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + CO(2) + NH(3) = ADP + carbamoyl phosphate
annotated property: database_cross_reference
annotated target: RHEA:10155

ATP + UDP = ADP + UTP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00276
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00015
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00075
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00015
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00075
database_cross_reference: KEGG:R00156
database_cross_reference: METACYC:UDPKIN-RXN
database_cross_reference: RHEA:25101
has_obo_namespace: reaction
id: UPa:UCR00156

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00276

Axiom
annotated source: ATP + UDP = ADP + UTP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + UDP = ADP + UTP
annotated property: database_cross_reference
annotated target: KEGG:R00156

MetaCyc REACTION
type: Axiom
annotated source: ATP + UDP = ADP + UTP
annotated property: database_cross_reference
annotated target: METACYC:UDPKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + UDP = ADP + UTP
annotated property: database_cross_reference
annotated target: RHEA:25101

ATP + UMP = ADP + UDP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00274
subclass of: Restriction
  on property: part of
  some values from: UPa UER00275
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00105
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00015
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00105
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00015
database_cross_reference: KEGG:R00158
database_cross_reference: METACYC:RXN-12002
database_cross_reference: RHEA:24403
has_obo_namespace: reaction
id: UPa:UCR00158

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00274

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00275

Axiom
annotated source: ATP + UMP = ADP + UDP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: ATP + UMP = ADP + UDP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + UMP = ADP + UDP
annotated property: database_cross_reference
annotated target: KEGG:R00158

MetaCyc REACTION
type: Axiom
annotated source: ATP + UMP = ADP + UDP
annotated property: database_cross_reference
annotated target: METACYC:RXN-12002
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + UMP = ADP + UDP
annotated property: database_cross_reference
annotated target: RHEA:24403

ATP + FMN = FAD + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00407
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00061
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00016
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00061
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00016
database_cross_reference: KEGG:R00161
database_cross_reference: METACYC:FADSYN-RXN
database_cross_reference: RHEA:17240
has_obo_namespace: reaction
id: UPa:UCR00161

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00407

Axiom
annotated source: ATP + FMN = FAD + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + FMN = FAD + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00161

MetaCyc REACTION
type: Axiom
annotated source: ATP + FMN = FAD + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:FADSYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + FMN = FAD + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:17240

H(2)O + pyridoxal 5'-phosphate = phosphate + pyridoxal
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00301
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00018
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00250
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00018
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00250
database_cross_reference: KEGG:R00173
database_cross_reference: METACYC:3.1.3.74-RXN
database_cross_reference: RHEA:20536
has_obo_namespace: reaction
id: UPa:UCR00173

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00301

Axiom
annotated source: H(2)O + pyridoxal 5'-phosphate = phosphate + pyridoxal
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + pyridoxal 5'-phosphate = phosphate + pyridoxal
annotated property: database_cross_reference
annotated target: KEGG:R00173

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + pyridoxal 5'-phosphate = phosphate + pyridoxal
annotated property: database_cross_reference
annotated target: METACYC:3.1.3.74-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + pyridoxal 5'-phosphate = phosphate + pyridoxal
annotated property: database_cross_reference
annotated target: RHEA:20536

ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00298
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00250
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00018
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00250
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00018
database_cross_reference: KEGG:R00174
database_cross_reference: METACYC:PYRIDOXKIN-RXN
database_cross_reference: RHEA:10227
has_obo_namespace: reaction
id: UPa:UCR00174

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00298

Axiom
annotated source: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00174

MetaCyc REACTION
type: Axiom
annotated source: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: METACYC:PYRIDOXKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: RHEA:10227

S-adenosyl-L-methionine + diphosphate + phosphate = ATP + H(2)O + L-methionine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00019
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00073
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00019
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00073
database_cross_reference: KEGG:R00177
database_cross_reference: METACYC:S-ADENMETSYN-RXN
database_cross_reference: RHEA:21083
has_obo_namespace: reaction
id: UPa:UCR00177

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00080

Axiom
annotated source: S-adenosyl-L-methionine + diphosphate + phosphate = ATP + H(2)O + L-methionine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: S-adenosyl-L-methionine + diphosphate + phosphate = ATP + H(2)O + L-methionine
annotated property: database_cross_reference
annotated target: KEGG:R00177

MetaCyc REACTION
type: Axiom
annotated source: S-adenosyl-L-methionine + diphosphate + phosphate = ATP + H(2)O + L-methionine
annotated property: database_cross_reference
annotated target: METACYC:S-ADENMETSYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: S-adenosyl-L-methionine + diphosphate + phosphate = ATP + H(2)O + L-methionine
annotated property: database_cross_reference
annotated target: RHEA:21083

H(+) + S-adenosyl-L-methionine = CO(2) + S-adenosylmethioninamine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00451
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00019
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01137
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00019
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01137
database_cross_reference: KEGG:R00178
database_cross_reference: METACYC:SAMDECARB-RXN
database_cross_reference: RHEA:15984
has_obo_namespace: reaction
id: UPa:UCR00178

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00451

Axiom
annotated source: H(+) + S-adenosyl-L-methionine = CO(2) + S-adenosylmethioninamine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(+) + S-adenosyl-L-methionine = CO(2) + S-adenosylmethioninamine
annotated property: database_cross_reference
annotated target: KEGG:R00178

MetaCyc REACTION
type: Axiom
annotated source: H(+) + S-adenosyl-L-methionine = CO(2) + S-adenosylmethioninamine
annotated property: database_cross_reference
annotated target: METACYC:SAMDECARB-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(+) + S-adenosyl-L-methionine = CO(2) + S-adenosylmethioninamine
annotated property: database_cross_reference
annotated target: RHEA:15984

S-adenosyl-L-methionine = 1-aminocyclopropanecarboxylate + S-methyl-5'-thioadenosine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00562
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00019
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00170
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01234
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00019
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00170
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01234
database_cross_reference: KEGG:R00179
database_cross_reference: METACYC:4.4.1.14-RXN
database_cross_reference: RHEA:21747
has_obo_namespace: reaction
id: UPa:UCR00179

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00562

Axiom
annotated source: S-adenosyl-L-methionine = 1-aminocyclopropanecarboxylate + S-methyl-5'-thioadenosine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: S-adenosyl-L-methionine = 1-aminocyclopropanecarboxylate + S-methyl-5'-thioadenosine
annotated property: database_cross_reference
annotated target: KEGG:R00179

MetaCyc REACTION
type: Axiom
annotated source: S-adenosyl-L-methionine = 1-aminocyclopropanecarboxylate + S-methyl-5'-thioadenosine
annotated property: database_cross_reference
annotated target: METACYC:4.4.1.14-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: S-adenosyl-L-methionine = 1-aminocyclopropanecarboxylate + S-methyl-5'-thioadenosine
annotated property: database_cross_reference
annotated target: RHEA:21747

AMP + H(2)O = IMP + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00663
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00130
database_cross_reference: KEGG:R00181
database_cross_reference: METACYC:AMP-DEAMINASE-RXN
database_cross_reference: RHEA:14780
has_obo_namespace: reaction
id: UPa:UCR00181

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00663

Axiom
annotated source: AMP + H(2)O = IMP + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: AMP + H(2)O = IMP + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00181

MetaCyc REACTION
type: Axiom
annotated source: AMP + H(2)O = IMP + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:AMP-DEAMINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: AMP + H(2)O = IMP + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:14780

ATP + adenosine = ADP + AMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00659
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00212
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00212
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
database_cross_reference: KEGG:R00185
database_cross_reference: METACYC:ADENOSINE-KINASE-RXN
database_cross_reference: RHEA:20827
has_obo_namespace: reaction
id: UPa:UCR00185

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00659

Axiom
annotated source: ATP + adenosine = ADP + AMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + adenosine = ADP + AMP
annotated property: database_cross_reference
annotated target: KEGG:R00185

MetaCyc REACTION
type: Axiom
annotated source: ATP + adenosine = ADP + AMP
annotated property: database_cross_reference
annotated target: METACYC:ADENOSINE-KINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + adenosine = ADP + AMP
annotated property: database_cross_reference
annotated target: RHEA:20827

ATP + NH(3) + deamido-NAD(+) = AMP + NAD(+) + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00333
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00857
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00857
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
database_cross_reference: KEGG:R00189
database_cross_reference: METACYC:NAD-SYNTH-NH3-RXN
database_cross_reference: RHEA:21191
has_obo_namespace: reaction
id: UPa:UCR00189

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00333

Axiom
annotated source: ATP + NH(3) + deamido-NAD(+) = AMP + NAD(+) + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + NH(3) + deamido-NAD(+) = AMP + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00189

MetaCyc REACTION
type: Axiom
annotated source: ATP + NH(3) + deamido-NAD(+) = AMP + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:NAD-SYNTH-NH3-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + NH(3) + deamido-NAD(+) = AMP + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:21191

AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00646
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00147
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00147
database_cross_reference: KEGG:R00190
database_cross_reference: METACYC:ADENPRIBOSYLTRAN-RXN
database_cross_reference: RHEA:16612
has_obo_namespace: reaction
id: UPa:UCR00190

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00646

Axiom
annotated source: AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine
annotated property: database_cross_reference
annotated target: KEGG:R00190

MetaCyc REACTION
type: Axiom
annotated source: AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine
annotated property: database_cross_reference
annotated target: METACYC:ADENPRIBOSYLTRAN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine
annotated property: database_cross_reference
annotated target: RHEA:16612

3',5'-cyclic AMP + H(2)O = AMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00747
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00575
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00575
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
database_cross_reference: KEGG:R00191
database_cross_reference: METACYC:RXN0-5038
database_cross_reference: RHEA:25280
has_obo_namespace: reaction
id: UPa:UCR00191

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00747

Axiom
annotated source: 3',5'-cyclic AMP + H(2)O = AMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3',5'-cyclic AMP + H(2)O = AMP
annotated property: database_cross_reference
annotated target: KEGG:R00191

MetaCyc REACTION
type: Axiom
annotated source: 3',5'-cyclic AMP + H(2)O = AMP
annotated property: database_cross_reference
annotated target: METACYC:RXN0-5038
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3',5'-cyclic AMP + H(2)O = AMP
annotated property: database_cross_reference
annotated target: RHEA:25280

H(2)O + S-adenosyl-L-homocysteine = L-homocysteine + adenosine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00076
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00021
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00212
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00021
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00155
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00212
database_cross_reference: KEGG:R00192
database_cross_reference: METACYC:ADENOSYLHOMOCYSTEINASE-RXN
database_cross_reference: RHEA:21711
has_obo_namespace: reaction
id: UPa:UCR00192

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00076

Axiom
annotated source: H(2)O + S-adenosyl-L-homocysteine = L-homocysteine + adenosine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + S-adenosyl-L-homocysteine = L-homocysteine + adenosine
annotated property: database_cross_reference
annotated target: KEGG:R00192

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + S-adenosyl-L-homocysteine = L-homocysteine + adenosine
annotated property: database_cross_reference
annotated target: METACYC:ADENOSYLHOMOCYSTEINASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + S-adenosyl-L-homocysteine = L-homocysteine + adenosine
annotated property: database_cross_reference
annotated target: RHEA:21711

ATP + pyruvate = ADP + phosphoenolpyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00188
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00074
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00074
database_cross_reference: KEGG:R00200
database_cross_reference: METACYC:PEPDEPHOS-RXN
database_cross_reference: RHEA:18160
has_obo_namespace: reaction
id: UPa:UCR00200

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00188

Axiom
annotated source: ATP + pyruvate = ADP + phosphoenolpyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + pyruvate = ADP + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00200

MetaCyc REACTION
type: Axiom
annotated source: ATP + pyruvate = ADP + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: METACYC:PEPDEPHOS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + pyruvate = ADP + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: RHEA:18160

acetyl-CoA + formate = CoA + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00891
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00058
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00058
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
database_cross_reference: KEGG:R00212
database_cross_reference: METACYC:PYRUVFORMLY-RXN
database_cross_reference: RHEA:11847
has_obo_namespace: reaction
id: UPa:UCR00212

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00891

Axiom
annotated source: acetyl-CoA + formate = CoA + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetyl-CoA + formate = CoA + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00212

MetaCyc REACTION
type: Axiom
annotated source: acetyl-CoA + formate = CoA + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:PYRUVFORMLY-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: acetyl-CoA + formate = CoA + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:11847

(S)-2-acetolactate + CO(2) = 2 pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00677
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has input
  some values from: UPa UPC06010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC06010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
database_cross_reference: KEGG:R00226
database_cross_reference: METACYC:ACETOLACTSYN-RXN
database_cross_reference: RHEA:25252
has_obo_namespace: reaction
id: UPa:UCR00226

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00677

Axiom
annotated source: (S)-2-acetolactate + CO(2) = 2 pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-2-acetolactate + CO(2) = 2 pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00226

MetaCyc REACTION
type: Axiom
annotated source: (S)-2-acetolactate + CO(2) = 2 pyruvate
annotated property: database_cross_reference
annotated target: METACYC:ACETOLACTSYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (S)-2-acetolactate + CO(2) = 2 pyruvate
annotated property: database_cross_reference
annotated target: RHEA:25252

CoA + NAD(+) + acetaldehyde = H(+) + NADH + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00798
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00084
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00228
database_cross_reference: METACYC:ACETALD-DEHYDROG-RXN
database_cross_reference: RHEA:23291
has_obo_namespace: reaction
id: UPa:UCR00228

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00798

Axiom
annotated source: CoA + NAD(+) + acetaldehyde = H(+) + NADH + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: CoA + NAD(+) + acetaldehyde = H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00228

MetaCyc REACTION
type: Axiom
annotated source: CoA + NAD(+) + acetaldehyde = H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:ACETALD-DEHYDROG-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: CoA + NAD(+) + acetaldehyde = H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:23291

acetyl-CoA + phosphate = CoA + acetyl phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00459
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00227
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00227
database_cross_reference: KEGG:R00230
database_cross_reference: METACYC:PHOSACETYLTRANS-RXN
database_cross_reference: RHEA:19524
has_obo_namespace: reaction
id: UPa:UCR00230

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00459

Axiom
annotated source: acetyl-CoA + phosphate = CoA + acetyl phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetyl-CoA + phosphate = CoA + acetyl phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00230

MetaCyc REACTION
type: Axiom
annotated source: acetyl-CoA + phosphate = CoA + acetyl phosphate
annotated property: database_cross_reference
annotated target: METACYC:PHOSACETYLTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: acetyl-CoA + phosphate = CoA + acetyl phosphate
annotated property: database_cross_reference
annotated target: RHEA:19524

malonyl-CoA = CO(2) + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00710
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00083
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00083
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
database_cross_reference: KEGG:R00233
database_cross_reference: METACYC:MALONYL-COA-DECARBOXYLASE-RXN
database_cross_reference: RHEA:18784
has_obo_namespace: reaction
id: UPa:UCR00233

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00710

Axiom
annotated source: malonyl-CoA = CO(2) + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: malonyl-CoA = CO(2) + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00233

MetaCyc REACTION
type: Axiom
annotated source: malonyl-CoA = CO(2) + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:MALONYL-COA-DECARBOXYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: malonyl-CoA = CO(2) + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:18784

2 acetyl-CoA = CoA + acetoacetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00101
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00332
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00332
database_cross_reference: KEGG:R00238
database_cross_reference: METACYC:ACETYL-COA-ACETYLTRANSFER-RXN
database_cross_reference: RHEA:21039
has_obo_namespace: reaction
id: UPa:UCR00238

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00101

Axiom
annotated source: 2 acetyl-CoA = CoA + acetoacetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 acetyl-CoA = CoA + acetoacetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00238

MetaCyc REACTION
type: Axiom
annotated source: 2 acetyl-CoA = CoA + acetoacetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:ACETYL-COA-ACETYLTRANSFER-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2 acetyl-CoA = CoA + acetoacetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:21039

ATP + L-glutamate = ADP + L-glutamyl 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00359
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03287
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03287
database_cross_reference: KEGG:R00239
database_cross_reference: METACYC:GLUTKIN-RXN
database_cross_reference: RHEA:14880
has_obo_namespace: reaction
id: UPa:UCR00239

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00359

Axiom
annotated source: ATP + L-glutamate = ADP + L-glutamyl 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-glutamate = ADP + L-glutamyl 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00239

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-glutamate = ADP + L-glutamyl 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLUTKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + L-glutamate = ADP + L-glutamyl 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:14880

H(2)O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00591
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00243
database_cross_reference: METACYC:GLUTAMATE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:15136
has_obo_namespace: reaction
id: UPa:UCR00243

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00591

Axiom
annotated source: H(2)O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00243

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMATE-DEHYDROGENASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-glutamate + NAD(+) = 2-oxoglutarate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:15136

ATP + L-glutamate + NH(3) = ADP + L-glutamine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01025
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00064
database_cross_reference: KEGG:R00253
database_cross_reference: METACYC:GLUTAMINESYN-RXN
database_cross_reference: RHEA:16172
has_obo_namespace: reaction
id: UPa:UCR00253

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01025

Axiom
annotated source: ATP + L-glutamate + NH(3) = ADP + L-glutamine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-glutamate + NH(3) = ADP + L-glutamine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00253

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-glutamate + NH(3) = ADP + L-glutamine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMINESYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + L-glutamate + NH(3) = ADP + L-glutamine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:16172

H(2)O + L-glutamine = L-glutamate + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00040
subclass of: Restriction
  on property: part of
  some values from: UPa UER00149
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
database_cross_reference: KEGG:R00256
database_cross_reference: METACYC:GLUTAMIN-RXN
database_cross_reference: RHEA:15892
has_obo_namespace: reaction
id: UPa:UCR00256

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00040

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00149

Axiom
annotated source: H(2)O + L-glutamine = L-glutamate + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 2

Axiom
annotated source: H(2)O + L-glutamine = L-glutamate + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 2

KEGG reaction
type: Axiom
annotated source: H(2)O + L-glutamine = L-glutamate + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00256

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-glutamine = L-glutamate + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:GLUTAMIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + L-glutamine = L-glutamate + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:15892

ATP + H(2)O + L-glutamine + deamido-NAD(+) = AMP + L-glutamate + NAD(+) + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00334
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00857
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00857
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
database_cross_reference: KEGG:R00257
database_cross_reference: METACYC:NAD-SYNTH-GLN-RXN
database_cross_reference: RHEA:24387
has_obo_namespace: reaction
id: UPa:UCR00257

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00334

Axiom
annotated source: ATP + H(2)O + L-glutamine + deamido-NAD(+) = AMP + L-glutamate + NAD(+) + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + deamido-NAD(+) = AMP + L-glutamate + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00257

MetaCyc REACTION
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + deamido-NAD(+) = AMP + L-glutamate + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:NAD-SYNTH-GLN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + deamido-NAD(+) = AMP + L-glutamate + NAD(+) + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:24387

2-oxoglutarate + L-alanine = L-glutamate + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00586
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
database_cross_reference: KEGG:R00258
database_cross_reference: METACYC:ALANINE-AMINOTRANSFERASE-RXN
database_cross_reference: RHEA:19456
has_obo_namespace: reaction
id: UPa:UCR00258

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00586

Axiom
annotated source: 2-oxoglutarate + L-alanine = L-glutamate + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-alanine = L-glutamate + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00258

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-alanine = L-glutamate + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:ALANINE-AMINOTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-alanine = L-glutamate + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:19456

L-glutamate + acetyl-CoA = CoA + N-acetyl-L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00106
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00624
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00624
database_cross_reference: KEGG:R00259
database_cross_reference: METACYC:N-ACETYLTRANSFER-RXN
database_cross_reference: RHEA:24295
has_obo_namespace: reaction
id: UPa:UCR00259

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00106

Axiom
annotated source: L-glutamate + acetyl-CoA = CoA + N-acetyl-L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-glutamate + acetyl-CoA = CoA + N-acetyl-L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R00259

MetaCyc REACTION
type: Axiom
annotated source: L-glutamate + acetyl-CoA = CoA + N-acetyl-L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:N-ACETYLTRANSFER-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-glutamate + acetyl-CoA = CoA + N-acetyl-L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:24295

(2S,3S)-3-methyl-L-aspartate = L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00617
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03618
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03618
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
database_cross_reference: KEGG:R00262
database_cross_reference: METACYC:METHYLASPARTATE-MUTASE-RXN
database_cross_reference: RHEA:12860
has_obo_namespace: reaction
id: UPa:UCR00262

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00617

Axiom
annotated source: (2S,3S)-3-methyl-L-aspartate = L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (2S,3S)-3-methyl-L-aspartate = L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R00262

MetaCyc REACTION
type: Axiom
annotated source: (2S,3S)-3-methyl-L-aspartate = L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:METHYLASPARTATE-MUTASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (2S,3S)-3-methyl-L-aspartate = L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:12860

2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00573
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00433
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00433
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00264
database_cross_reference: METACYC:25-DIOXOVALERATE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:11299
has_obo_namespace: reaction
id: UPa:UCR00264

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00573

Axiom
annotated source: 2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00264

MetaCyc REACTION
type: Axiom
annotated source: 2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:25-DIOXOVALERATE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2,5-dioxopentanoate + H(2)O + NADP(+) = 2-oxoglutarate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:11299

NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00995
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00311
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00311
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00267
database_cross_reference: METACYC:ISOCITDEH-RXN
database_cross_reference: METACYC:RXN-8642
database_cross_reference: RHEA:19632
has_obo_namespace: reaction
id: UPa:UCR00267

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00995

Axiom
annotated source: NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00267

MetaCyc REACTION
type: Axiom
annotated source: NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:ISOCITDEH-RXN
source: MetaCyc

MetaCyc REACTION
type: Axiom
annotated source: NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN-8642
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: NADP(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:19632

2-oxoglutarate + H(2)O + acetyl-CoA = (R)-homocitrate + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01251
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01251
database_cross_reference: KEGG:R00271
database_cross_reference: METACYC:HOMOCITRATE-SYNTHASE-RXN
database_cross_reference: RHEA:12932
has_obo_namespace: reaction
id: UPa:UCR00271

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00028

Axiom
annotated source: 2-oxoglutarate + H(2)O + acetyl-CoA = (R)-homocitrate + CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + H(2)O + acetyl-CoA = (R)-homocitrate + CoA
annotated property: database_cross_reference
annotated target: KEGG:R00271

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + H(2)O + acetyl-CoA = (R)-homocitrate + CoA
annotated property: database_cross_reference
annotated target: METACYC:HOMOCITRATE-SYNTHASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + H(2)O + acetyl-CoA = (R)-homocitrate + CoA
annotated property: database_cross_reference
annotated target: RHEA:12932

2-oxoglutarate = CO(2) + succinate semialdehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00232
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00232
database_cross_reference: KEGG:R00272
database_cross_reference: METACYC:RXN-7774
database_cross_reference: RHEA:10527
has_obo_namespace: reaction
id: UPa:UCR00272

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01001

Axiom
annotated source: 2-oxoglutarate = CO(2) + succinate semialdehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate = CO(2) + succinate semialdehyde
annotated property: database_cross_reference
annotated target: KEGG:R00272

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate = CO(2) + succinate semialdehyde
annotated property: database_cross_reference
annotated target: METACYC:RXN-7774
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate = CO(2) + succinate semialdehyde
annotated property: database_cross_reference
annotated target: RHEA:10527

H(2)O + O(2) + pyridoxamine 5'-phosphate = H(2)O(2) + NH(3) + pyridoxal 5'-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00304
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00647
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00018
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00647
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00018
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
database_cross_reference: KEGG:R00277
database_cross_reference: METACYC:PMPOXI-RXN
database_cross_reference: RHEA:15820
has_obo_namespace: reaction
id: UPa:UCR00277

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00304

Axiom
annotated source: H(2)O + O(2) + pyridoxamine 5'-phosphate = H(2)O(2) + NH(3) + pyridoxal 5'-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + O(2) + pyridoxamine 5'-phosphate = H(2)O(2) + NH(3) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00277

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + O(2) + pyridoxamine 5'-phosphate = H(2)O(2) + NH(3) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: METACYC:PMPOXI-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + O(2) + pyridoxamine 5'-phosphate = H(2)O(2) + NH(3) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: RHEA:15820

O(2) + pyridoxine 5'-phosphate = H(2)O(2) + pyridoxal 5'-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00305
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00627
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00018
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00627
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00018
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
database_cross_reference: KEGG:R00278
database_cross_reference: METACYC:PNPOXI-RXN
database_cross_reference: RHEA:15152
has_obo_namespace: reaction
id: UPa:UCR00278

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00305

Axiom
annotated source: O(2) + pyridoxine 5'-phosphate = H(2)O(2) + pyridoxal 5'-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O(2) + pyridoxine 5'-phosphate = H(2)O(2) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00278

MetaCyc REACTION
type: Axiom
annotated source: O(2) + pyridoxine 5'-phosphate = H(2)O(2) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: METACYC:PNPOXI-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: O(2) + pyridoxine 5'-phosphate = H(2)O(2) + pyridoxal 5'-phosphate
annotated property: database_cross_reference
annotated target: RHEA:15152

H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 2 H(+) + 2 NADH + UDP-alpha-D-glucuronate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00491
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00029
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00167
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00029
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00167
database_cross_reference: KEGG:R00286
database_cross_reference: METACYC:UGD-RXN
database_cross_reference: RHEA:23599
has_obo_namespace: reaction
id: UPa:UCR00286

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00491

Axiom
annotated source: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 2 H(+) + 2 NADH + UDP-alpha-D-glucuronate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 2 H(+) + 2 NADH + UDP-alpha-D-glucuronate
annotated property: database_cross_reference
annotated target: KEGG:R00286

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 2 H(+) + 2 NADH + UDP-alpha-D-glucuronate
annotated property: database_cross_reference
annotated target: METACYC:UGD-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + 2 NAD(+) + UDP-alpha-D-glucose = 2 H(+) + 2 NADH + UDP-alpha-D-glucuronate
annotated property: database_cross_reference
annotated target: RHEA:23599

2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00708
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00126
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00533
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00125
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00887
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00126
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00533
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00125
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00887
database_cross_reference: KEGG:R00294
database_cross_reference: METACYC:NITRIC-OXIDE-REDUCTASE-RXN
database_cross_reference: RHEA:10991
database_cross_reference: RHEA:30214
has_obo_namespace: reaction
id: UPa:UCR00294

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00708

Axiom
annotated source: 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
annotated property: database_cross_reference
annotated target: KEGG:R00294

MetaCyc REACTION
type: Axiom
annotated source: 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
annotated property: database_cross_reference
annotated target: METACYC:NITRIC-OXIDE-REDUCTASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
annotated property: database_cross_reference
annotated target: RHEA:10991

Rhea reaction
type: Axiom
annotated source: 2 H(+) + 2 ferrocytochrome c + 2 nitric oxide = H(2)O + 2 ferricytochrome c + nitrous oxide
annotated property: database_cross_reference
annotated target: RHEA:30214

ATP + D-glucose = ADP + D-glucose 6-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00180
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00031
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00092
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00031
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00092
database_cross_reference: KEGG:R00299
database_cross_reference: METACYC:GLUCOKIN-RXN
database_cross_reference: RHEA:17828
has_obo_namespace: reaction
id: UPa:UCR00299

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00180

Axiom
annotated source: ATP + D-glucose = ADP + D-glucose 6-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + D-glucose = ADP + D-glucose 6-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00299

MetaCyc REACTION
type: Axiom
annotated source: ATP + D-glucose = ADP + D-glucose 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLUCOKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + D-glucose = ADP + D-glucose 6-phosphate
annotated property: database_cross_reference
annotated target: RHEA:17828

Fe2+ + protoporphyrin-IX = 2 H(+) + protoheme
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00325
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02191
subclass of: Restriction
  on property: has input
  some values from: UPa UPC14818
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00032
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02191
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC14818
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00032
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00310
database_cross_reference: METACYC:PROTOHEMEFERROCHELAT-RXN
database_cross_reference: RHEA:22587
has_obo_namespace: reaction
id: UPa:UCR00310

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00325

Axiom
annotated source: Fe2+ + protoporphyrin-IX = 2 H(+) + protoheme
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: Fe2+ + protoporphyrin-IX = 2 H(+) + protoheme
annotated property: database_cross_reference
annotated target: KEGG:R00310

MetaCyc REACTION
type: Axiom
annotated source: Fe2+ + protoporphyrin-IX = 2 H(+) + protoheme
annotated property: database_cross_reference
annotated target: METACYC:PROTOHEMEFERROCHELAT-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: Fe2+ + protoporphyrin-IX = 2 H(+) + protoheme
annotated property: database_cross_reference
annotated target: RHEA:22587

ATP + acetate = ADP + acetyl phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00458
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00227
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00033
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00227
database_cross_reference: KEGG:R00315
database_cross_reference: METACYC:ACETATEKIN-RXN
database_cross_reference: RHEA:11355
has_obo_namespace: reaction
id: UPa:UCR00315

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00458

Axiom
annotated source: ATP + acetate = ADP + acetyl phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + acetate = ADP + acetyl phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00315

MetaCyc REACTION
type: Axiom
annotated source: ATP + acetate = ADP + acetyl phosphate
annotated property: database_cross_reference
annotated target: METACYC:ACETATEKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + acetate = ADP + acetyl phosphate
annotated property: database_cross_reference
annotated target: RHEA:11355

L-citramalate = acetate + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00620
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02614
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02614
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00033
database_cross_reference: KEGG:R00325
database_cross_reference: METACYC:CITRAMALATE-LYASE-RXN
database_cross_reference: RHEA:15548
has_obo_namespace: reaction
id: UPa:UCR00325

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00620

Axiom
annotated source: L-citramalate = acetate + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-citramalate = acetate + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00325

MetaCyc REACTION
type: Axiom
annotated source: L-citramalate = acetate + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:CITRAMALATE-LYASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-citramalate = acetate + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:15548

H(2)O + ppGpp = GDP + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00886
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01228
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00035
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01228
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00035
database_cross_reference: KEGG:R00336
database_cross_reference: METACYC:PPGPPSYN-RXN
database_cross_reference: RHEA:14256
has_obo_namespace: reaction
id: UPa:UCR00336

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00886

Axiom
annotated source: H(2)O + ppGpp = GDP + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + ppGpp = GDP + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00336

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + ppGpp = GDP + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:PPGPPSYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + ppGpp = GDP + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:14256

(S)-malate + NAD(+) = H(+) + NADH + oxaloacetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00721
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00149
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00036
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00149
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00036
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00342
database_cross_reference: METACYC:MALATE-DEH-RXN
database_cross_reference: RHEA:21435
has_obo_namespace: reaction
id: UPa:UCR00342

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00721

Axiom
annotated source: (S)-malate + NAD(+) = H(+) + NADH + oxaloacetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-malate + NAD(+) = H(+) + NADH + oxaloacetate
annotated property: database_cross_reference
annotated target: KEGG:R00342

MetaCyc REACTION
type: Axiom
annotated source: (S)-malate + NAD(+) = H(+) + NADH + oxaloacetate
annotated property: database_cross_reference
annotated target: METACYC:MALATE-DEH-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (S)-malate + NAD(+) = H(+) + NADH + oxaloacetate
annotated property: database_cross_reference
annotated target: RHEA:21435

CoA + citrate = H(2)O + acetyl-CoA + oxaloacetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00717
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00158
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00036
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00158
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00036
database_cross_reference: KEGG:R00351
database_cross_reference: METACYC:CITSYN-RXN
database_cross_reference: RHEA:16848
has_obo_namespace: reaction
id: UPa:UCR00351

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00717

Axiom
annotated source: CoA + citrate = H(2)O + acetyl-CoA + oxaloacetate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: CoA + citrate = H(2)O + acetyl-CoA + oxaloacetate
annotated property: database_cross_reference
annotated target: KEGG:R00351

MetaCyc REACTION
type: Axiom
annotated source: CoA + citrate = H(2)O + acetyl-CoA + oxaloacetate
annotated property: database_cross_reference
annotated target: METACYC:CITSYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: CoA + citrate = H(2)O + acetyl-CoA + oxaloacetate
annotated property: database_cross_reference
annotated target: RHEA:16848

2-oxoglutarate + L-aspartate = L-glutamate + oxaloacetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00036
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00036
database_cross_reference: KEGG:R00355
database_cross_reference: METACYC:ASPAMINOTRANS-RXN
database_cross_reference: RHEA:21827
has_obo_namespace: reaction
id: UPa:UCR00355

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01024

Axiom
annotated source: 2-oxoglutarate + L-aspartate = L-glutamate + oxaloacetate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-aspartate = L-glutamate + oxaloacetate
annotated property: database_cross_reference
annotated target: KEGG:R00355

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-aspartate = L-glutamate + oxaloacetate
annotated property: database_cross_reference
annotated target: METACYC:ASPAMINOTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-aspartate = L-glutamate + oxaloacetate
annotated property: database_cross_reference
annotated target: RHEA:21827

(S)-malate + Quinone = Hydroquinone + oxaloacetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01008
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00149
subclass of: Restriction
  on property: has input
  some values from: UPa UPC15602
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00036
subclass of: Restriction
  on property: has output
  some values from: UPa UPC15603
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00149
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC15602
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00036
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC15603
database_cross_reference: KEGG:R00361
database_cross_reference: METACYC:MALATE-DEHYDROGENASE-ACCEPTOR-RXN
database_cross_reference: RHEA:22559
has_obo_namespace: reaction
id: UPa:UCR00361

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01008

KEGG reaction
type: Axiom
annotated source: (S)-malate + Quinone = Hydroquinone + oxaloacetate
annotated property: database_cross_reference
annotated target: KEGG:R00361

MetaCyc REACTION
type: Axiom
annotated source: (S)-malate + Quinone = Hydroquinone + oxaloacetate
annotated property: database_cross_reference
annotated target: METACYC:MALATE-DEHYDROGENASE-ACCEPTOR-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (S)-malate + Quinone = Hydroquinone + oxaloacetate
annotated property: database_cross_reference
annotated target: RHEA:22559

Axiom
annotated source: (S)-malate + Quinone = Hydroquinone + oxaloacetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00381
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00019
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00021
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00213
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00019
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00021
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00213
database_cross_reference: KEGG:R00367
database_cross_reference: METACYC:GLYCINE-N-METHYLTRANSFERASE-RXN
database_cross_reference: RHEA:19940
has_obo_namespace: reaction
id: UPa:UCR00367

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00381

Axiom
annotated source: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine
annotated property: database_cross_reference
annotated target: KEGG:R00367

MetaCyc REACTION
type: Axiom
annotated source: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine
annotated property: database_cross_reference
annotated target: METACYC:GLYCINE-N-METHYLTRANSFERASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: S-adenosyl-L-methionine + glycine = S-adenosyl-L-homocysteine + sarcosine
annotated property: database_cross_reference
annotated target: RHEA:19940

L-alanine + glyoxylate = glycine + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00428
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00048
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00037
database_cross_reference: KEGG:R00369
database_cross_reference: METACYC:ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN
database_cross_reference: RHEA:24251
has_obo_namespace: reaction
id: UPa:UCR00369

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00428

Axiom
annotated source: L-alanine + glyoxylate = glycine + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-alanine + glyoxylate = glycine + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00369

MetaCyc REACTION
type: Axiom
annotated source: L-alanine + glyoxylate = glycine + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-alanine + glyoxylate = glycine + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:24251

acetyl-CoA + glycine = CoA + L-2-amino-3-oxobutanoic acid
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00506
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03508
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03508
database_cross_reference: KEGG:R00371
database_cross_reference: METACYC:AKBLIG-RXN
database_cross_reference: RHEA:20739
has_obo_namespace: reaction
id: UPa:UCR00371

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00506

Axiom
annotated source: acetyl-CoA + glycine = CoA + L-2-amino-3-oxobutanoic acid
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetyl-CoA + glycine = CoA + L-2-amino-3-oxobutanoic acid
annotated property: database_cross_reference
annotated target: KEGG:R00371

MetaCyc REACTION
type: Axiom
annotated source: acetyl-CoA + glycine = CoA + L-2-amino-3-oxobutanoic acid
annotated property: database_cross_reference
annotated target: METACYC:AKBLIG-RXN
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: acetyl-CoA + glycine = CoA + L-2-amino-3-oxobutanoic acid
annotated property: database_cross_reference
annotated target: RHEA:20739

2-oxoglutarate + glycine = L-glutamate + glyoxylate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00913
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00372
database_cross_reference: METACYC:GLYCINE-AMINOTRANSFERASE-RXN
database_cross_reference: RHEA:14092
has_obo_namespace: reaction
id: UPa:UCR00372

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00913

Axiom
annotated source: 2-oxoglutarate + glycine = L-glutamate + glyoxylate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + glycine = L-glutamate + glyoxylate
annotated property: database_cross_reference
annotated target: KEGG:R00372

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + glycine = L-glutamate + glyoxylate
annotated property: database_cross_reference
annotated target: METACYC:GLYCINE-AMINOTRANSFERASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + glycine = L-glutamate + glyoxylate
annotated property: database_cross_reference
annotated target: RHEA:14092

H(2)O + L-alanine + NAD(+) = H(+) + NADH + NH(3) + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00585
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00396
database_cross_reference: METACYC:ALANINE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:18408
has_obo_namespace: reaction
id: UPa:UCR00396

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00585

Axiom
annotated source: H(2)O + L-alanine + NAD(+) = H(+) + NADH + NH(3) + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-alanine + NAD(+) = H(+) + NADH + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00396

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-alanine + NAD(+) = H(+) + NADH + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:ALANINE-DEHYDROGENASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-alanine + NAD(+) = H(+) + NADH + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:18408

L-alanine = D-alanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00497
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00133
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00133
database_cross_reference: KEGG:R00401
database_cross_reference: METACYC:ALARACECAT-RXN
database_cross_reference: RHEA:20252
has_obo_namespace: reaction
id: UPa:UCR00401

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00497

Axiom
annotated source: L-alanine = D-alanine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-alanine = D-alanine
annotated property: database_cross_reference
annotated target: KEGG:R00401

MetaCyc REACTION
type: Axiom
annotated source: L-alanine = D-alanine
annotated property: database_cross_reference
annotated target: METACYC:ALARACECAT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-alanine = D-alanine
annotated property: database_cross_reference
annotated target: RHEA:20252

ATP + CoA + succinate = ADP + phosphate + succinyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00999
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00091
database_cross_reference: KEGG:R00405
database_cross_reference: METACYC:SUCCCOASYN-RXN
database_cross_reference: RHEA:17664
has_obo_namespace: reaction
id: UPa:UCR00405

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00999

Axiom
annotated source: ATP + CoA + succinate = ADP + phosphate + succinyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + CoA + succinate = ADP + phosphate + succinyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00405

MetaCyc REACTION
type: Axiom
annotated source: ATP + CoA + succinate = ADP + phosphate + succinyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:SUCCCOASYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + CoA + succinate = ADP + phosphate + succinyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:17664

acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00894
subclass of: Restriction
  on property: part of
  some values from: UPa UER01000
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00164
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00332
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00091
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00164
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00332
database_cross_reference: KEGG:R00410
database_cross_reference: METACYC:RXNI-2
database_cross_reference: RHEA:25483
has_obo_namespace: reaction
id: UPa:UCR00410

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00894

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01000

Axiom
annotated source: acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
annotated property: database_cross_reference
annotated target: KEGG:R00410

MetaCyc REACTION
type: Axiom
annotated source: acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
annotated property: database_cross_reference
annotated target: METACYC:RXNI-2
source: Rhea

Rhea reaction
type: Axiom
annotated source: acetoacetate + succinyl-CoA = acetoacetyl-CoA + succinate
annotated property: database_cross_reference
annotated target: RHEA:25483

H(2)O + N(2)-succinyl-L-glutamic acid = L-glutamate + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00283
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC05931
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC05931
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
database_cross_reference: KEGG:R00411
database_cross_reference: METACYC:SUCCGLUDESUCC-RXN
database_cross_reference: RHEA:15172
has_obo_namespace: reaction
id: UPa:UCR00411

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00283

Axiom
annotated source: H(2)O + N(2)-succinyl-L-glutamic acid = L-glutamate + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N(2)-succinyl-L-glutamic acid = L-glutamate + succinate
annotated property: database_cross_reference
annotated target: KEGG:R00411

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N(2)-succinyl-L-glutamic acid = L-glutamate + succinate
annotated property: database_cross_reference
annotated target: METACYC:SUCCGLUDESUCC-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + N(2)-succinyl-L-glutamic acid = L-glutamate + succinate
annotated property: database_cross_reference
annotated target: RHEA:15172

acceptor + succinate = fumarate + reduced acceptor
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01005
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00030
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00122
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00028
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00030
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00122
database_cross_reference: KEGG:R00412
database_cross_reference: RHEA:16360
has_obo_namespace: reaction
id: UPa:UCR00412

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01005

Axiom
annotated source: acceptor + succinate = fumarate + reduced acceptor
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acceptor + succinate = fumarate + reduced acceptor
annotated property: database_cross_reference
annotated target: KEGG:R00412

Rhea reaction
type: Axiom
annotated source: acceptor + succinate = fumarate + reduced acceptor
annotated property: database_cross_reference
annotated target: RHEA:16360

N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = UDP-N-acetyl-alpha-D-glucosamine + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00533
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00075
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04501
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00043
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00075
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04501
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00043
database_cross_reference: KEGG:R00416
database_cross_reference: METACYC:NAG1P-URIDYLTRANS-RXN
database_cross_reference: RHEA:13512
has_obo_namespace: reaction
id: UPa:UCR00416

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00533

Axiom
annotated source: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = UDP-N-acetyl-alpha-D-glucosamine + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = UDP-N-acetyl-alpha-D-glucosamine + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00416

MetaCyc REACTION
type: Axiom
annotated source: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = UDP-N-acetyl-alpha-D-glucosamine + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:NAG1P-URIDYLTRANS-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = UDP-N-acetyl-alpha-D-glucosamine + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:13512

GTP + 3 H(2)O = 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine + diphosphate + formate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00400
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00044
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00058
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01304
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00044
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00058
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01304
database_cross_reference: KEGG:R00425
database_cross_reference: METACYC:GTP-CYCLOHYDRO-II-RXN
database_cross_reference: RHEA:23707
has_obo_namespace: reaction
id: UPa:UCR00425

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00400

Axiom
annotated source: GTP + 3 H(2)O = 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine + diphosphate + formate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GTP + 3 H(2)O = 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine + diphosphate + formate
annotated property: database_cross_reference
annotated target: KEGG:R00425

MetaCyc REACTION
type: Axiom
annotated source: GTP + 3 H(2)O = 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine + diphosphate + formate
annotated property: database_cross_reference
annotated target: METACYC:GTP-CYCLOHYDRO-II-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: GTP + 3 H(2)O = 2,5-diamino-4-hydroxy-6-(5-phosphoribosylamino)pyrimidine + diphosphate + formate
annotated property: database_cross_reference
annotated target: RHEA:23707

GTP + H(2)O = formamidopyrimidine nucleoside triphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00151
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00044
subclass of: Restriction
  on property: has output
  some values from: UPa UPC05922
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00044
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC05922
database_cross_reference: KEGG:R00428
has_obo_namespace: reaction
id: UPa:UCR00428

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00151

Axiom
annotated source: GTP + H(2)O = formamidopyrimidine nucleoside triphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GTP + H(2)O = formamidopyrimidine nucleoside triphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00428

ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00884
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00044
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04494
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00044
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04494
database_cross_reference: KEGG:R00429
database_cross_reference: METACYC:GTPPYPHOSKIN-RXN
database_cross_reference: RHEA:22091
has_obo_namespace: reaction
id: UPa:UCR00429

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00884

Axiom
annotated source: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00429

MetaCyc REACTION
type: Axiom
annotated source: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate
annotated property: database_cross_reference
annotated target: METACYC:GTPPYPHOSKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate
annotated property: database_cross_reference
annotated target: RHEA:22091

DL-2,6-diaminopimelate = CO(2) + L-lysine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00027
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00680
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00047
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00680
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00047
database_cross_reference: KEGG:R00451
database_cross_reference: METACYC:DIAMINOPIMDECARB-RXN
database_cross_reference: RHEA:15104
has_obo_namespace: reaction
id: UPa:UCR00451

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00027

Axiom
annotated source: DL-2,6-diaminopimelate = CO(2) + L-lysine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: DL-2,6-diaminopimelate = CO(2) + L-lysine
annotated property: database_cross_reference
annotated target: KEGG:R00451

MetaCyc REACTION
type: Axiom
annotated source: DL-2,6-diaminopimelate = CO(2) + L-lysine
annotated property: database_cross_reference
annotated target: METACYC:DIAMINOPIMDECARB-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: DL-2,6-diaminopimelate = CO(2) + L-lysine
annotated property: database_cross_reference
annotated target: RHEA:15104

(S)-ureidoglycolate + H(2)O = CO(2) + 2 NH(3) + glyoxylate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00656
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00603
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00603
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00469
database_cross_reference: METACYC:UREIDOGLYCOLATE-HYDROLASE-RXN
database_cross_reference: RHEA:19812
has_obo_namespace: reaction
id: UPa:UCR00469

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00656

Axiom
annotated source: (S)-ureidoglycolate + H(2)O = CO(2) + 2 NH(3) + glyoxylate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-ureidoglycolate + H(2)O = CO(2) + 2 NH(3) + glyoxylate
annotated property: database_cross_reference
annotated target: KEGG:R00469

MetaCyc REACTION
type: Axiom
annotated source: (S)-ureidoglycolate + H(2)O = CO(2) + 2 NH(3) + glyoxylate
annotated property: database_cross_reference
annotated target: METACYC:UREIDOGLYCOLATE-HYDROLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (S)-ureidoglycolate + H(2)O = CO(2) + 2 NH(3) + glyoxylate
annotated property: database_cross_reference
annotated target: RHEA:19812

(S)-malate + CoA = H(2)O + acetyl-CoA + glyoxylate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00720
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00149
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00149
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00472
database_cross_reference: METACYC:MALSYN-RXN
database_cross_reference: RHEA:18184
has_obo_namespace: reaction
id: UPa:UCR00472

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00720

Axiom
annotated source: (S)-malate + CoA = H(2)O + acetyl-CoA + glyoxylate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-malate + CoA = H(2)O + acetyl-CoA + glyoxylate
annotated property: database_cross_reference
annotated target: KEGG:R00472

MetaCyc REACTION
type: Axiom
annotated source: (S)-malate + CoA = H(2)O + acetyl-CoA + glyoxylate
annotated property: database_cross_reference
annotated target: METACYC:MALSYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (S)-malate + CoA = H(2)O + acetyl-CoA + glyoxylate
annotated property: database_cross_reference
annotated target: RHEA:18184

O(2) + glycolate = H(2)O(2) + glyoxylate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00912
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00160
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00160
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00475
database_cross_reference: METACYC:RXN-969
database_cross_reference: RHEA:25314
has_obo_namespace: reaction
id: UPa:UCR00475

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00912

Axiom
annotated source: O(2) + glycolate = H(2)O(2) + glyoxylate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O(2) + glycolate = H(2)O(2) + glyoxylate
annotated property: database_cross_reference
annotated target: KEGG:R00475

MetaCyc REACTION
type: Axiom
annotated source: O(2) + glycolate = H(2)O(2) + glyoxylate
annotated property: database_cross_reference
annotated target: METACYC:RXN-969
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: O(2) + glycolate = H(2)O(2) + glyoxylate
annotated property: database_cross_reference
annotated target: RHEA:25314

acceptor + glycolate = glyoxylate + reduced acceptor
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00830
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00160
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00030
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00028
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00160
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00030
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00476
database_cross_reference: METACYC:GLYCOLATEDEHYDRO-RXN
database_cross_reference: RHEA:21267
has_obo_namespace: reaction
id: UPa:UCR00476

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00830

Axiom
annotated source: acceptor + glycolate = glyoxylate + reduced acceptor
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acceptor + glycolate = glyoxylate + reduced acceptor
annotated property: database_cross_reference
annotated target: KEGG:R00476

MetaCyc REACTION
type: Axiom
annotated source: acceptor + glycolate = glyoxylate + reduced acceptor
annotated property: database_cross_reference
annotated target: METACYC:GLYCOLATEDEHYDRO-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: acceptor + glycolate = glyoxylate + reduced acceptor
annotated property: database_cross_reference
annotated target: RHEA:21267

isocitrate = glyoxylate + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00719
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00311
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00048
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00311
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00048
database_cross_reference: KEGG:R00479
database_cross_reference: METACYC:ISOCIT-CLEAV-RXN
database_cross_reference: RHEA:13248
has_obo_namespace: reaction
id: UPa:UCR00479

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00719

Axiom
annotated source: isocitrate = glyoxylate + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: isocitrate = glyoxylate + succinate
annotated property: database_cross_reference
annotated target: KEGG:R00479

MetaCyc REACTION
type: Axiom
annotated source: isocitrate = glyoxylate + succinate
annotated property: database_cross_reference
annotated target: METACYC:ISOCIT-CLEAV-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: isocitrate = glyoxylate + succinate
annotated property: database_cross_reference
annotated target: RHEA:13248

ATP + L-aspartate = 4-phospho-L-aspartate + ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00015
subclass of: Restriction
  on property: part of
  some values from: UPa UER00461
subclass of: Restriction
  on property: part of
  some values from: UPa UER00462
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03082
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03082
database_cross_reference: KEGG:R00480
database_cross_reference: METACYC:ASPARTATEKIN-RXN
database_cross_reference: RHEA:23779
has_obo_namespace: reaction
id: UPa:UCR00480

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00015

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00461

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00462

Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: database_cross_reference
annotated target: KEGG:R00480

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: database_cross_reference
annotated target: METACYC:ASPARTATEKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + L-aspartate = 4-phospho-L-aspartate + ADP
annotated property: database_cross_reference
annotated target: RHEA:23779

L-aspartate + O(2) = H(2)O(2) + iminoaspartate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00326
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has output
  some values from: UPa UPC05840
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC05840
database_cross_reference: KEGG:R00481
database_cross_reference: RHEA:25879
has_obo_namespace: reaction
id: UPa:UCR00481

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00326

Axiom
annotated source: L-aspartate + O(2) = H(2)O(2) + iminoaspartate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-aspartate + O(2) = H(2)O(2) + iminoaspartate
annotated property: database_cross_reference
annotated target: KEGG:R00481

Rhea reaction
type: Axiom
annotated source: L-aspartate + O(2) = H(2)O(2) + iminoaspartate
annotated property: database_cross_reference
annotated target: RHEA:25879

ATP + L-aspartate + NH(3) = AMP + L-asparagine + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00194
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00152
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00152
database_cross_reference: KEGG:R00483
database_cross_reference: METACYC:ASNSYNA-RXN
database_cross_reference: RHEA:11375
has_obo_namespace: reaction
id: UPa:UCR00483

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00194

Axiom
annotated source: ATP + L-aspartate + NH(3) = AMP + L-asparagine + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-aspartate + NH(3) = AMP + L-asparagine + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00483

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-aspartate + NH(3) = AMP + L-asparagine + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:ASNSYNA-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + L-aspartate + NH(3) = AMP + L-asparagine + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:11375

L-aspartate = CO(2) + beta-alanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00099
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00099
database_cross_reference: KEGG:R00489
database_cross_reference: METACYC:ASPDECARBOX-RXN
database_cross_reference: RHEA:19500
has_obo_namespace: reaction
id: UPa:UCR00489

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00002

Axiom
annotated source: L-aspartate = CO(2) + beta-alanine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-aspartate = CO(2) + beta-alanine
annotated property: database_cross_reference
annotated target: KEGG:R00489

MetaCyc REACTION
type: Axiom
annotated source: L-aspartate = CO(2) + beta-alanine
annotated property: database_cross_reference
annotated target: METACYC:ASPDECARBOX-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-aspartate = CO(2) + beta-alanine
annotated property: database_cross_reference
annotated target: RHEA:19500

ATP + L-gamma-glutamyl-L-cysteine + glycine = ADP + glutathione + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00210
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00669
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00051
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00669
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00051
database_cross_reference: KEGG:R00497
database_cross_reference: METACYC:GLUTATHIONE-SYN-RXN
database_cross_reference: RHEA:13560
has_obo_namespace: reaction
id: UPa:UCR00497

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00210

Axiom
annotated source: ATP + L-gamma-glutamyl-L-cysteine + glycine = ADP + glutathione + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-gamma-glutamyl-L-cysteine + glycine = ADP + glutathione + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00497

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-gamma-glutamyl-L-cysteine + glycine = ADP + glutathione + phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLUTATHIONE-SYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + L-gamma-glutamyl-L-cysteine + glycine = ADP + glutathione + phosphate
annotated property: database_cross_reference
annotated target: RHEA:13560

5'-adenylyl sulfate + ATP = 3'-phospho-5'-adenylyl sulfate + ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00205
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00224
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00053
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00224
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00053
database_cross_reference: KEGG:R00509
database_cross_reference: METACYC:ADENYLYLSULFKIN-RXN
database_cross_reference: RHEA:24155
has_obo_namespace: reaction
id: UPa:UCR00509

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00205

Axiom
annotated source: 5'-adenylyl sulfate + ATP = 3'-phospho-5'-adenylyl sulfate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 5'-adenylyl sulfate + ATP = 3'-phospho-5'-adenylyl sulfate + ADP
annotated property: database_cross_reference
annotated target: KEGG:R00509

MetaCyc REACTION
type: Axiom
annotated source: 5'-adenylyl sulfate + ATP = 3'-phospho-5'-adenylyl sulfate + ADP
annotated property: database_cross_reference
annotated target: METACYC:ADENYLYLSULFKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 5'-adenylyl sulfate + ATP = 3'-phospho-5'-adenylyl sulfate + ADP
annotated property: database_cross_reference
annotated target: RHEA:24155

ATP + CMP = ADP + CDP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00641
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00055
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00112
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00055
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00112
database_cross_reference: KEGG:R00512
database_cross_reference: METACYC:RXN-11832
database_cross_reference: RHEA:11603
has_obo_namespace: reaction
id: UPa:UCR00512

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00641

Axiom
annotated source: ATP + CMP = ADP + CDP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + CMP = ADP + CDP
annotated property: database_cross_reference
annotated target: KEGG:R00512

MetaCyc REACTION
type: Axiom
annotated source: ATP + CMP = ADP + CDP
annotated property: database_cross_reference
annotated target: METACYC:RXN-11832
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + CMP = ADP + CDP
annotated property: database_cross_reference
annotated target: RHEA:11603

ATP + cytidine = ADP + CMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00640
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00475
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00055
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00475
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00055
database_cross_reference: KEGG:R00513
database_cross_reference: METACYC:CYTIKIN-RXN
database_cross_reference: RHEA:24677
has_obo_namespace: reaction
id: UPa:UCR00513

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00640

Axiom
annotated source: ATP + cytidine = ADP + CMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + cytidine = ADP + CMP
annotated property: database_cross_reference
annotated target: KEGG:R00513

MetaCyc REACTION
type: Axiom
annotated source: ATP + cytidine = ADP + CMP
annotated property: database_cross_reference
annotated target: METACYC:CYTIKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + cytidine = ADP + CMP
annotated property: database_cross_reference
annotated target: RHEA:24677

H(2)O + N-formyl-L-glutamate = L-glutamate + formate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00554
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01045
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00058
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01045
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00058
database_cross_reference: KEGG:R00525
database_cross_reference: METACYC:N-FORMYLGLUTAMATE-DEFORMYLASE-RXN
database_cross_reference: RHEA:12479
has_obo_namespace: reaction
id: UPa:UCR00525

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00554

Axiom
annotated source: H(2)O + N-formyl-L-glutamate = L-glutamate + formate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N-formyl-L-glutamate = L-glutamate + formate
annotated property: database_cross_reference
annotated target: KEGG:R00525

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N-formyl-L-glutamate = L-glutamate + formate
annotated property: database_cross_reference
annotated target: METACYC:N-FORMYLGLUTAMATE-DEFORMYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + N-formyl-L-glutamate = L-glutamate + formate
annotated property: database_cross_reference
annotated target: RHEA:12479

H(2)O + S-formylglutathione = formate + glutathione
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00623
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01031
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00051
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00058
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01031
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00051
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00058
database_cross_reference: KEGG:R00527
database_cross_reference: METACYC:S-FORMYLGLUTATHIONE-HYDROLASE-RXN
database_cross_reference: RHEA:14964
has_obo_namespace: reaction
id: UPa:UCR00527

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00623

Axiom
annotated source: H(2)O + S-formylglutathione = formate + glutathione
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + S-formylglutathione = formate + glutathione
annotated property: database_cross_reference
annotated target: KEGG:R00527

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + S-formylglutathione = formate + glutathione
annotated property: database_cross_reference
annotated target: METACYC:S-FORMYLGLUTATHIONE-HYDROLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + S-formylglutathione = formate + glutathione
annotated property: database_cross_reference
annotated target: RHEA:14964

ATP + sulfate = 5'-adenylyl sulfate + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00204
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00059
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00224
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00059
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00224
database_cross_reference: KEGG:R00529
database_cross_reference: METACYC:SULFATE-ADENYLYLTRANS-RXN
database_cross_reference: RHEA:18136
has_obo_namespace: reaction
id: UPa:UCR00529

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00204

Axiom
annotated source: ATP + sulfate = 5'-adenylyl sulfate + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + sulfate = 5'-adenylyl sulfate + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00529

MetaCyc REACTION
type: Axiom
annotated source: ATP + sulfate = 5'-adenylyl sulfate + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:SULFATE-ADENYLYLTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + sulfate = 5'-adenylyl sulfate + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:18136

ATP + riboflavin = ADP + FMN
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00406
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00255
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00061
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00255
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00061
database_cross_reference: KEGG:R00549
database_cross_reference: METACYC:RIBOFLAVINKIN-RXN
database_cross_reference: RHEA:14360
has_obo_namespace: reaction
id: UPa:UCR00549

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00406

Axiom
annotated source: ATP + riboflavin = ADP + FMN
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + riboflavin = ADP + FMN
annotated property: database_cross_reference
annotated target: KEGG:R00549

MetaCyc REACTION
type: Axiom
annotated source: ATP + riboflavin = ADP + FMN
annotated property: database_cross_reference
annotated target: METACYC:RIBOFLAVINKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + riboflavin = ADP + FMN
annotated property: database_cross_reference
annotated target: RHEA:14360

H(2)O + L-arginine = L-ornithine + urea
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00270
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00086
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00086
database_cross_reference: KEGG:R00551
database_cross_reference: METACYC:ARGINASE-RXN
database_cross_reference: RHEA:20572
has_obo_namespace: reaction
id: UPa:UCR00551

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00270

Axiom
annotated source: H(2)O + L-arginine = L-ornithine + urea
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-arginine = L-ornithine + urea
annotated property: database_cross_reference
annotated target: KEGG:R00551

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-arginine = L-ornithine + urea
annotated property: database_cross_reference
annotated target: METACYC:ARGINASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-arginine = L-ornithine + urea
annotated property: database_cross_reference
annotated target: RHEA:20572

H(2)O + L-arginine = L-citrulline + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00364
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00327
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00327
database_cross_reference: KEGG:R00552
database_cross_reference: METACYC:ARGININE-DEIMINASE-RXN
database_cross_reference: RHEA:19600
has_obo_namespace: reaction
id: UPa:UCR00552

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00364

Axiom
annotated source: H(2)O + L-arginine = L-citrulline + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-arginine = L-citrulline + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00552

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-arginine = L-citrulline + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:ARGININE-DEIMINASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-arginine = L-citrulline + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:19600

L-arginine + glycine = L-ornithine + guanidinoacetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00579
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00581
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00581
database_cross_reference: KEGG:R00565
database_cross_reference: METACYC:GLYCINE-AMIDINOTRANSFERASE-RXN
database_cross_reference: RHEA:13204
has_obo_namespace: reaction
id: UPa:UCR00565

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00579

Axiom
annotated source: L-arginine + glycine = L-ornithine + guanidinoacetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arginine + glycine = L-ornithine + guanidinoacetate
annotated property: database_cross_reference
annotated target: KEGG:R00565

MetaCyc REACTION
type: Axiom
annotated source: L-arginine + glycine = L-ornithine + guanidinoacetate
annotated property: database_cross_reference
annotated target: METACYC:GLYCINE-AMIDINOTRANSFERASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-arginine + glycine = L-ornithine + guanidinoacetate
annotated property: database_cross_reference
annotated target: RHEA:13204

L-arginine = CO(2) + agmatine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00284
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00179
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00179
database_cross_reference: KEGG:R00566
database_cross_reference: METACYC:ARGDECARBOX-RXN
database_cross_reference: RHEA:17644
has_obo_namespace: reaction
id: UPa:UCR00566

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00284

Axiom
annotated source: L-arginine = CO(2) + agmatine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arginine = CO(2) + agmatine
annotated property: database_cross_reference
annotated target: KEGG:R00566

MetaCyc REACTION
type: Axiom
annotated source: L-arginine = CO(2) + agmatine
annotated property: database_cross_reference
annotated target: METACYC:ARGDECARBOX-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-arginine = CO(2) + agmatine
annotated property: database_cross_reference
annotated target: RHEA:17644

ATP + CDP = ADP + CTP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00642
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00112
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00063
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00112
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00063
database_cross_reference: KEGG:R00570
database_cross_reference: METACYC:CDPKIN-RXN
database_cross_reference: RHEA:25240
has_obo_namespace: reaction
id: UPa:UCR00570

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00642

Axiom
annotated source: ATP + CDP = ADP + CTP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + CDP = ADP + CTP
annotated property: database_cross_reference
annotated target: KEGG:R00570

MetaCyc REACTION
type: Axiom
annotated source: ATP + CDP = ADP + CTP
annotated property: database_cross_reference
annotated target: METACYC:CDPKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + CDP = ADP + CTP
annotated property: database_cross_reference
annotated target: RHEA:25240

ATP + NH(3) + UTP = ADP + CTP + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00277
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00075
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00063
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00075
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00063
database_cross_reference: KEGG:R00571
database_cross_reference: RHEA:16600
has_obo_namespace: reaction
id: UPa:UCR00571

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00277

Axiom
annotated source: ATP + NH(3) + UTP = ADP + CTP + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + NH(3) + UTP = ADP + CTP + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00571

Rhea reaction
type: Axiom
annotated source: ATP + NH(3) + UTP = ADP + CTP + phosphate
annotated property: database_cross_reference
annotated target: RHEA:16600

2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00115
subclass of: Restriction
  on property: part of
  some values from: UPa UER00171
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00288
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00169
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00288
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00169
database_cross_reference: KEGG:R00575
database_cross_reference: METACYC:CARBPSYN-RXN
database_cross_reference: RHEA:18636
has_obo_namespace: reaction
id: UPa:UCR00575

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00115

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00171

Axiom
annotated source: 2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: 2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00575

MetaCyc REACTION
type: Axiom
annotated source: 2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
annotated property: database_cross_reference
annotated target: METACYC:CARBPSYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2 ATP + H(2)O + L-glutamine + bicarbonate = 2 ADP + L-glutamate + carbamoyl phosphate + phosphate
annotated property: database_cross_reference
annotated target: RHEA:18636

ATP + H(2)O + L-aspartate + L-glutamine = AMP + L-asparagine + L-glutamate + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00195
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00152
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00152
database_cross_reference: KEGG:R00578
database_cross_reference: METACYC:ASNSYNB-RXN
database_cross_reference: RHEA:12231
has_obo_namespace: reaction
id: UPa:UCR00578

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00195

Axiom
annotated source: ATP + H(2)O + L-aspartate + L-glutamine = AMP + L-asparagine + L-glutamate + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + H(2)O + L-aspartate + L-glutamine = AMP + L-asparagine + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00578

MetaCyc REACTION
type: Axiom
annotated source: ATP + H(2)O + L-aspartate + L-glutamine = AMP + L-asparagine + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:ASNSYNB-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + H(2)O + L-aspartate + L-glutamine = AMP + L-asparagine + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:12231

H(2)O + O-phospho-L-serine = L-serine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00198
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00065
database_cross_reference: KEGG:R00582
database_cross_reference: METACYC:RXN0-5114
database_cross_reference: RHEA:21211
has_obo_namespace: reaction
id: UPa:UCR00582

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00198

Axiom
annotated source: H(2)O + O-phospho-L-serine = L-serine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + O-phospho-L-serine = L-serine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00582

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + O-phospho-L-serine = L-serine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:RXN0-5114
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + O-phospho-L-serine = L-serine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:21211

L-serine + pyruvate = 3-hydroxypyruvate + L-alanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00915
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00168
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00065
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00168
database_cross_reference: KEGG:R00585
database_cross_reference: METACYC:SERINE--PYRUVATE-AMINOTRANSFERASE-RXN
database_cross_reference: RHEA:22855
has_obo_namespace: reaction
id: UPa:UCR00585

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00915

Axiom
annotated source: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine
annotated property: database_cross_reference
annotated target: KEGG:R00585

MetaCyc REACTION
type: Axiom
annotated source: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine
annotated property: database_cross_reference
annotated target: METACYC:SERINE--PYRUVATE-AMINOTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-serine + pyruvate = 3-hydroxypyruvate + L-alanine
annotated property: database_cross_reference
annotated target: RHEA:22855

L-serine + acetyl-CoA = CoA + O-acetyl-L-serine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00199
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00979
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00065
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00979
database_cross_reference: KEGG:R00586
database_cross_reference: METACYC:SERINE-O-ACETTRAN-RXN
database_cross_reference: RHEA:24563
has_obo_namespace: reaction
id: UPa:UCR00586

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00199

Axiom
annotated source: L-serine + acetyl-CoA = CoA + O-acetyl-L-serine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-serine + acetyl-CoA = CoA + O-acetyl-L-serine
annotated property: database_cross_reference
annotated target: KEGG:R00586

MetaCyc REACTION
type: Axiom
annotated source: L-serine + acetyl-CoA = CoA + O-acetyl-L-serine
annotated property: database_cross_reference
annotated target: METACYC:SERINE-O-ACETTRAN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-serine + acetyl-CoA = CoA + O-acetyl-L-serine
annotated property: database_cross_reference
annotated target: RHEA:24563

NAD(+) + methanol = H(+) + NADH + formaldehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00893
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00132
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00067
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00132
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00067
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00605
database_cross_reference: METACYC:METHANOL-DEHYDROGENASE-RXN
database_cross_reference: RHEA:19404
has_obo_namespace: reaction
id: UPa:UCR00605

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00893

Axiom
annotated source: NAD(+) + methanol = H(+) + NADH + formaldehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + methanol = H(+) + NADH + formaldehyde
annotated property: database_cross_reference
annotated target: KEGG:R00605

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + methanol = H(+) + NADH + formaldehyde
annotated property: database_cross_reference
annotated target: METACYC:METHANOL-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: NAD(+) + methanol = H(+) + NADH + formaldehyde
annotated property: database_cross_reference
annotated target: RHEA:19404

H(2)O + amicyanin + methylamine = 2 H(+) + NH(3) + formaldehyde + reduced amicyanin
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00870
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00218
subclass of: Restriction
  on property: has input
  some values from: UPa UPC19671
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00067
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC19672
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00218
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC19671
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00067
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC19672
database_cross_reference: KEGG:R00606
database_cross_reference: METACYC:RXN-2841
database_cross_reference: RHEA:30210
has_obo_namespace: reaction
id: UPa:UCR00606

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00870

Axiom
annotated source: H(2)O + amicyanin + methylamine = 2 H(+) + NH(3) + formaldehyde + reduced amicyanin
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + amicyanin + methylamine = 2 H(+) + NH(3) + formaldehyde + reduced amicyanin
annotated property: database_cross_reference
annotated target: KEGG:R00606

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + amicyanin + methylamine = 2 H(+) + NH(3) + formaldehyde + reduced amicyanin
annotated property: database_cross_reference
annotated target: METACYC:RXN-2841
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + amicyanin + methylamine = 2 H(+) + NH(3) + formaldehyde + reduced amicyanin
annotated property: database_cross_reference
annotated target: RHEA:30210

H(2)O + electron-transferring flavoprotein + sarcosine = formaldehyde + glycine + reduced electron-transferring flavoprotein
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00398
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00213
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04253
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00067
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04570
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00213
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04253
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00067
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04570
database_cross_reference: KEGG:R00611
database_cross_reference: METACYC:SARCOSINE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:19796
has_obo_namespace: reaction
id: UPa:UCR00611

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00398

Axiom
annotated source: H(2)O + electron-transferring flavoprotein + sarcosine = formaldehyde + glycine + reduced electron-transferring flavoprotein
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + electron-transferring flavoprotein + sarcosine = formaldehyde + glycine + reduced electron-transferring flavoprotein
annotated property: database_cross_reference
annotated target: KEGG:R00611

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + electron-transferring flavoprotein + sarcosine = formaldehyde + glycine + reduced electron-transferring flavoprotein
annotated property: database_cross_reference
annotated target: METACYC:SARCOSINE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + electron-transferring flavoprotein + sarcosine = formaldehyde + glycine + reduced electron-transferring flavoprotein
annotated property: database_cross_reference
annotated target: RHEA:19796

ATP + thiamine phosphate = ADP + thiamine diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00142
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01081
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00068
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01081
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00068
database_cross_reference: KEGG:R00617
database_cross_reference: METACYC:THI-P-KIN-RXN
database_cross_reference: RHEA:15916
has_obo_namespace: reaction
id: UPa:UCR00617

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00142

Axiom
annotated source: ATP + thiamine phosphate = ADP + thiamine diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + thiamine phosphate = ADP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00617

MetaCyc REACTION
type: Axiom
annotated source: ATP + thiamine phosphate = ADP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: METACYC:THI-P-KIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + thiamine phosphate = ADP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: RHEA:15916

ATP + thiamine = AMP + thiamine diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00597
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00378
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00068
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00378
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00068
database_cross_reference: KEGG:R00619
database_cross_reference: METACYC:THIAMIN-PYROPHOSPHOKINASE-RXN
database_cross_reference: RHEA:11579
has_obo_namespace: reaction
id: UPa:UCR00619

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00597

Axiom
annotated source: ATP + thiamine = AMP + thiamine diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + thiamine = AMP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00619

MetaCyc REACTION
type: Axiom
annotated source: ATP + thiamine = AMP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: METACYC:THIAMIN-PYROPHOSPHOKINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + thiamine = AMP + thiamine diphosphate
annotated property: database_cross_reference
annotated target: RHEA:11579

L-Galactono-1,4-lactone + 2 ferricytochrome c = 2 H(+) + L-ascorbate + 2 ferrocytochrome c
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00935
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00125
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01115
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00072
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00126
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00125
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01115
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00072
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00126
database_cross_reference: KEGG:R00640
database_cross_reference: METACYC:GALACTONOLACTONE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:14760
has_obo_namespace: reaction
id: UPa:UCR00640

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00935

Axiom
annotated source: L-Galactono-1,4-lactone + 2 ferricytochrome c = 2 H(+) + L-ascorbate + 2 ferrocytochrome c
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-Galactono-1,4-lactone + 2 ferricytochrome c = 2 H(+) + L-ascorbate + 2 ferrocytochrome c
annotated property: database_cross_reference
annotated target: KEGG:R00640

MetaCyc REACTION
type: Axiom
annotated source: L-Galactono-1,4-lactone + 2 ferricytochrome c = 2 H(+) + L-ascorbate + 2 ferrocytochrome c
annotated property: database_cross_reference
annotated target: METACYC:GALACTONOLACTONE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-Galactono-1,4-lactone + 2 ferricytochrome c = 2 H(+) + L-ascorbate + 2 ferrocytochrome c
annotated property: database_cross_reference
annotated target: RHEA:14760

L-ascorbate = L-xylo-hexulonolactone
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00939
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00072
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03289
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00072
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03289
database_cross_reference: KEGG:R00647
database_cross_reference: METACYC:RXN-8784
database_cross_reference: RHEA:15272
has_obo_namespace: reaction
id: UPa:UCR00647

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00939

Axiom
annotated source: L-ascorbate = L-xylo-hexulonolactone
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 2

KEGG reaction
type: Axiom
annotated source: L-ascorbate = L-xylo-hexulonolactone
annotated property: database_cross_reference
annotated target: KEGG:R00647

MetaCyc REACTION
type: Axiom
annotated source: L-ascorbate = L-xylo-hexulonolactone
annotated property: database_cross_reference
annotated target: METACYC:RXN-8784
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-ascorbate = L-xylo-hexulonolactone
annotated property: database_cross_reference
annotated target: RHEA:15272

2-phospho-D-glycerate = H(2)O + phosphoenolpyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00187
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00631
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00074
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00631
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00074
database_cross_reference: KEGG:R00658
database_cross_reference: METACYC:2PGADEHYDRAT-RXN
database_cross_reference: RHEA:10167
has_obo_namespace: reaction
id: UPa:UCR00658

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00187

Axiom
annotated source: 2-phospho-D-glycerate = H(2)O + phosphoenolpyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-phospho-D-glycerate = H(2)O + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00658

MetaCyc REACTION
type: Axiom
annotated source: 2-phospho-D-glycerate = H(2)O + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: METACYC:2PGADEHYDRAT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-phospho-D-glycerate = H(2)O + phosphoenolpyruvate
annotated property: database_cross_reference
annotated target: RHEA:10167

2-oxoglutarate + L-ornithine = L-glutamate + L-glutamate 5-semialdehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00358
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01165
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01165
database_cross_reference: KEGG:R00667
database_cross_reference: METACYC:ORNITHINE-GLU-AMINOTRANSFORASE-RXN
database_cross_reference: RHEA:25163
has_obo_namespace: reaction
id: UPa:UCR00667

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00358

Axiom
annotated source: 2-oxoglutarate + L-ornithine = L-glutamate + L-glutamate 5-semialdehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-ornithine = L-glutamate + L-glutamate 5-semialdehyde
annotated property: database_cross_reference
annotated target: KEGG:R00667

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-ornithine = L-glutamate + L-glutamate 5-semialdehyde
annotated property: database_cross_reference
annotated target: METACYC:ORNITHINE-GLU-AMINOTRANSFORASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-ornithine = L-glutamate + L-glutamate 5-semialdehyde
annotated property: database_cross_reference
annotated target: RHEA:25163

H(2)O + N(2)-acetyl-L-ornithine = L-ornithine + acetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00110
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00437
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00437
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00033
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00077
database_cross_reference: KEGG:R00669
database_cross_reference: METACYC:ACETYLORNDEACET-RXN
database_cross_reference: RHEA:15944
has_obo_namespace: reaction
id: UPa:UCR00669

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00110

Axiom
annotated source: H(2)O + N(2)-acetyl-L-ornithine = L-ornithine + acetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N(2)-acetyl-L-ornithine = L-ornithine + acetate
annotated property: database_cross_reference
annotated target: KEGG:R00669

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N(2)-acetyl-L-ornithine = L-ornithine + acetate
annotated property: database_cross_reference
annotated target: METACYC:ACETYLORNDEACET-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + N(2)-acetyl-L-ornithine = L-ornithine + acetate
annotated property: database_cross_reference
annotated target: RHEA:15944

L-ornithine = CO(2) + putrescine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00288
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00134
database_cross_reference: KEGG:R00670
database_cross_reference: METACYC:ORNDECARBOX-RXN
database_cross_reference: RHEA:22967
has_obo_namespace: reaction
id: UPa:UCR00670

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00288

Axiom
annotated source: L-ornithine = CO(2) + putrescine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-ornithine = CO(2) + putrescine
annotated property: database_cross_reference
annotated target: KEGG:R00670

MetaCyc REACTION
type: Axiom
annotated source: L-ornithine = CO(2) + putrescine
annotated property: database_cross_reference
annotated target: METACYC:ORNDECARBOX-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-ornithine = CO(2) + putrescine
annotated property: database_cross_reference
annotated target: RHEA:22967

L-ornithine = L-proline + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00357
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00148
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00148
database_cross_reference: KEGG:R00671
database_cross_reference: METACYC:ORNITHINE-CYCLODEAMINASE-RXN
database_cross_reference: RHEA:24371
has_obo_namespace: reaction
id: UPa:UCR00671

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00357

Axiom
annotated source: L-ornithine = L-proline + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-ornithine = L-proline + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00671

MetaCyc REACTION
type: Axiom
annotated source: L-ornithine = L-proline + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:ORNITHINE-CYCLODEAMINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-ornithine = L-proline + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:24371

H(2)O + L-tryptophan = NH(3) + indole + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00452
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00078
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00463
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00078
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00463
database_cross_reference: KEGG:R00673
database_cross_reference: METACYC:TRYPTOPHAN-RXN
database_cross_reference: RHEA:19556
has_obo_namespace: reaction
id: UPa:UCR00673

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00452

Axiom
annotated source: H(2)O + L-tryptophan = NH(3) + indole + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-tryptophan = NH(3) + indole + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00673

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-tryptophan = NH(3) + indole + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:TRYPTOPHAN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-tryptophan = NH(3) + indole + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:19556

L-serine + indole = H(2)O + L-tryptophan
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00044
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00463
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00078
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00065
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00463
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00078
database_cross_reference: KEGG:R00674
database_cross_reference: METACYC:RXN0-2382
database_cross_reference: RHEA:26437
has_obo_namespace: reaction
id: UPa:UCR00674

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00044

Axiom
annotated source: L-serine + indole = H(2)O + L-tryptophan
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 2

KEGG reaction
type: Axiom
annotated source: L-serine + indole = H(2)O + L-tryptophan
annotated property: database_cross_reference
annotated target: KEGG:R00674

MetaCyc REACTION
type: Axiom
annotated source: L-serine + indole = H(2)O + L-tryptophan
annotated property: database_cross_reference
annotated target: METACYC:RXN0-2382
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-serine + indole = H(2)O + L-tryptophan
annotated property: database_cross_reference
annotated target: RHEA:26437

L-tryptophan + O(2) = N-formyl-N-kynurenine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00453
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00078
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02700
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00078
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02700
database_cross_reference: KEGG:R00678
database_cross_reference: METACYC:RXN-8665
database_cross_reference: RHEA:24539
has_obo_namespace: reaction
id: UPa:UCR00678

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00453

Axiom
annotated source: L-tryptophan + O(2) = N-formyl-N-kynurenine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-tryptophan + O(2) = N-formyl-N-kynurenine
annotated property: database_cross_reference
annotated target: KEGG:R00678

MetaCyc REACTION
type: Axiom
annotated source: L-tryptophan + O(2) = N-formyl-N-kynurenine
annotated property: database_cross_reference
annotated target: METACYC:RXN-8665
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-tryptophan + O(2) = N-formyl-N-kynurenine
annotated property: database_cross_reference
annotated target: RHEA:24539

H(2)O + L-phenylalanine + NAD(+) = H(+) + NADH + NH(3) + phenylpyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00346
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00079
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00166
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00079
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00166
database_cross_reference: KEGG:R00688
database_cross_reference: METACYC:PHENYLALANINE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:21411
has_obo_namespace: reaction
id: UPa:UCR00688

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00346

Axiom
annotated source: H(2)O + L-phenylalanine + NAD(+) = H(+) + NADH + NH(3) + phenylpyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-phenylalanine + NAD(+) = H(+) + NADH + NH(3) + phenylpyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00688

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-phenylalanine + NAD(+) = H(+) + NADH + NH(3) + phenylpyruvate
annotated property: database_cross_reference
annotated target: METACYC:PHENYLALANINE-DEHYDROGENASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-phenylalanine + NAD(+) = H(+) + NADH + NH(3) + phenylpyruvate
annotated property: database_cross_reference
annotated target: RHEA:21411

L-arogenate = CO(2) + H(2)O + L-phenylalanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00344
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00826
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00079
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00826
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00079
database_cross_reference: KEGG:R00691
database_cross_reference: METACYC:CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN
database_cross_reference: RHEA:12539
has_obo_namespace: reaction
id: UPa:UCR00691

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00344

Axiom
annotated source: L-arogenate = CO(2) + H(2)O + L-phenylalanine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arogenate = CO(2) + H(2)O + L-phenylalanine
annotated property: database_cross_reference
annotated target: KEGG:R00691

MetaCyc REACTION
type: Axiom
annotated source: L-arogenate = CO(2) + H(2)O + L-phenylalanine
annotated property: database_cross_reference
annotated target: METACYC:CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-arogenate = CO(2) + H(2)O + L-phenylalanine
annotated property: database_cross_reference
annotated target: RHEA:12539

2-oxoglutarate + L-phenylalanine = L-glutamate + phenylpyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00347
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00079
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00166
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00079
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00166
database_cross_reference: KEGG:R00694
database_cross_reference: METACYC:PHEAMINOTRANS-RXN
database_cross_reference: RHEA:25155
has_obo_namespace: reaction
id: UPa:UCR00694

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00347

Axiom
annotated source: 2-oxoglutarate + L-phenylalanine = L-glutamate + phenylpyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-phenylalanine = L-glutamate + phenylpyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00694

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-phenylalanine = L-glutamate + phenylpyruvate
annotated property: database_cross_reference
annotated target: METACYC:PHEAMINOTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-phenylalanine = L-glutamate + phenylpyruvate
annotated property: database_cross_reference
annotated target: RHEA:25155

L-phenylalanine = NH(3) + trans-cinnamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00725
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00079
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00423
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00079
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00423
database_cross_reference: KEGG:R00697
database_cross_reference: METACYC:PHENYLALANINE-AMMONIA-LYASE-RXN
database_cross_reference: RHEA:21387
has_obo_namespace: reaction
id: UPa:UCR00697

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00725

Axiom
annotated source: L-phenylalanine = NH(3) + trans-cinnamate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-phenylalanine = NH(3) + trans-cinnamate
annotated property: database_cross_reference
annotated target: KEGG:R00697

MetaCyc REACTION
type: Axiom
annotated source: L-phenylalanine = NH(3) + trans-cinnamate
annotated property: database_cross_reference
annotated target: METACYC:PHENYLALANINE-AMMONIA-LYASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-phenylalanine = NH(3) + trans-cinnamate
annotated property: database_cross_reference
annotated target: RHEA:21387

L-phenylalanine = 2-phenylethylamine + CO(2)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00722
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00079
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC05332
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00079
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC05332
database_cross_reference: KEGG:R00699
database_cross_reference: METACYC:PHENYLALANINE-DECARBOXYLASE-RXN
database_cross_reference: RHEA:19720
has_obo_namespace: reaction
id: UPa:UCR00699

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00722

Axiom
annotated source: L-phenylalanine = 2-phenylethylamine + CO(2)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-phenylalanine = 2-phenylethylamine + CO(2)
annotated property: database_cross_reference
annotated target: KEGG:R00699

MetaCyc REACTION
type: Axiom
annotated source: L-phenylalanine = 2-phenylethylamine + CO(2)
annotated property: database_cross_reference
annotated target: METACYC:PHENYLALANINE-DECARBOXYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-phenylalanine = 2-phenylethylamine + CO(2)
annotated property: database_cross_reference
annotated target: RHEA:19720

(S)-lactate + NAD(+) = H(+) + NADH + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00611
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00186
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00186
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00703
database_cross_reference: METACYC:L-LACTATE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:23447
has_obo_namespace: reaction
id: UPa:UCR00703

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00611

Axiom
annotated source: (S)-lactate + NAD(+) = H(+) + NADH + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-lactate + NAD(+) = H(+) + NADH + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00703

MetaCyc REACTION
type: Axiom
annotated source: (S)-lactate + NAD(+) = H(+) + NADH + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:L-LACTATE-DEHYDROGENASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (S)-lactate + NAD(+) = H(+) + NADH + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:23447

3-oxopropanoate + CoA + NAD(+) = CO(2) + H(+) + NADH + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00951
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00222
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00222
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00705
database_cross_reference: METACYC:RXN-2902
database_cross_reference: RHEA:22995
has_obo_namespace: reaction
id: UPa:UCR00705

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00951

Axiom
annotated source: 3-oxopropanoate + CoA + NAD(+) = CO(2) + H(+) + NADH + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3-oxopropanoate + CoA + NAD(+) = CO(2) + H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00705

MetaCyc REACTION
type: Axiom
annotated source: 3-oxopropanoate + CoA + NAD(+) = CO(2) + H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:RXN-2902
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3-oxopropanoate + CoA + NAD(+) = CO(2) + H(+) + NADH + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:22995

3-oxopropanoate + CoA + NADP(+) = CO(2) + H(+) + NADPH + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00952
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00222
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00222
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00706
database_cross_reference: METACYC:1.2.1.18-RXN
database_cross_reference: RHEA:22991
has_obo_namespace: reaction
id: UPa:UCR00706

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00952

Axiom
annotated source: 3-oxopropanoate + CoA + NADP(+) = CO(2) + H(+) + NADPH + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3-oxopropanoate + CoA + NADP(+) = CO(2) + H(+) + NADPH + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00706

MetaCyc REACTION
type: Axiom
annotated source: 3-oxopropanoate + CoA + NADP(+) = CO(2) + H(+) + NADPH + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:1.2.1.18-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 3-oxopropanoate + CoA + NADP(+) = CO(2) + H(+) + NADPH + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:22991

(S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00374
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03912
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03912
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00707
database_cross_reference: METACYC:PYRROLINECARBDEHYDROG-RXN
database_cross_reference: METACYC:RXN-11632
database_cross_reference: RHEA:16420
database_cross_reference: RHEA:24893
has_obo_namespace: reaction
id: UPa:UCR00707

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00374

Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: database_cross_reference
annotated target: KEGG:R00707

MetaCyc REACTION
type: Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: database_cross_reference
annotated target: METACYC:PYRROLINECARBDEHYDROG-RXN
source: MetaCyc

MetaCyc REACTION
type: Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: database_cross_reference
annotated target: METACYC:RXN-11632
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: database_cross_reference
annotated target: RHEA:16420

Rhea reaction
type: Axiom
annotated source: (S)-1-pyrroline-5-carboxylic acid + 2 H(2)O + NAD(+) = H(+) + L-glutamate + NADH
annotated property: database_cross_reference
annotated target: RHEA:24893

NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00996
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00311
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00311
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00709
database_cross_reference: METACYC:ISOCITRATE-DEHYDROGENASE-NAD+-RXN
database_cross_reference: METACYC:RXN-7969
database_cross_reference: RHEA:23635
has_obo_namespace: reaction
id: UPa:UCR00709

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00996

Axiom
annotated source: NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R00709

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:ISOCITRATE-DEHYDROGENASE-NAD+-RXN
source: MetaCyc

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:RXN-7969
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: NAD(+) + isocitrate = 2-oxoglutarate + CO(2) + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:23635

H(2)O + NAD(+) + acetaldehyde = H(+) + NADH + acetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00768
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00084
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00033
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00710
database_cross_reference: METACYC:RXN66-3
database_cross_reference: RHEA:25297
has_obo_namespace: reaction
id: UPa:UCR00710

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00768

Axiom
annotated source: H(2)O + NAD(+) + acetaldehyde = H(+) + NADH + acetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NAD(+) + acetaldehyde = H(+) + NADH + acetate
annotated property: database_cross_reference
annotated target: KEGG:R00710

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NAD(+) + acetaldehyde = H(+) + NADH + acetate
annotated property: database_cross_reference
annotated target: METACYC:RXN66-3
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NAD(+) + acetaldehyde = H(+) + NADH + acetate
annotated property: database_cross_reference
annotated target: RHEA:25297

H(2)O + NAD(+) + succinate semialdehyde = H(+) + NADH + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00232
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00232
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00713
database_cross_reference: METACYC:SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:13220
has_obo_namespace: reaction
id: UPa:UCR00713

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01003

Axiom
annotated source: H(2)O + NAD(+) + succinate semialdehyde = H(+) + NADH + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NAD(+) + succinate semialdehyde = H(+) + NADH + succinate
annotated property: database_cross_reference
annotated target: KEGG:R00713

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NAD(+) + succinate semialdehyde = H(+) + NADH + succinate
annotated property: database_cross_reference
annotated target: METACYC:SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NAD(+) + succinate semialdehyde = H(+) + NADH + succinate
annotated property: database_cross_reference
annotated target: RHEA:13220

H(2)O + NADP(+) + succinate semialdehyde = H(+) + NADPH + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01004
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00232
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00232
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00714
database_cross_reference: METACYC:SUCCSEMIALDDEHYDROG-RXN
database_cross_reference: RHEA:13216
has_obo_namespace: reaction
id: UPa:UCR00714

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01004

Axiom
annotated source: H(2)O + NADP(+) + succinate semialdehyde = H(+) + NADPH + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NADP(+) + succinate semialdehyde = H(+) + NADPH + succinate
annotated property: database_cross_reference
annotated target: KEGG:R00714

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NADP(+) + succinate semialdehyde = H(+) + NADPH + succinate
annotated property: database_cross_reference
annotated target: METACYC:SUCCSEMIALDDEHYDROG-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NADP(+) + succinate semialdehyde = H(+) + NADPH + succinate
annotated property: database_cross_reference
annotated target: RHEA:13216

H(2)O + NAD(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00034
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00449
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00047
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00449
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00047
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00715
database_cross_reference: METACYC:1.5.1.7-RXN
database_cross_reference: RHEA:12443
has_obo_namespace: reaction
id: UPa:UCR00715

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00034

Axiom
annotated source: H(2)O + NAD(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NAD(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADH
annotated property: database_cross_reference
annotated target: KEGG:R00715

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NAD(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADH
annotated property: database_cross_reference
annotated target: METACYC:1.5.1.7-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NAD(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADH
annotated property: database_cross_reference
annotated target: RHEA:12443

H(2)O + NADP(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00835
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00449
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00047
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00449
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00047
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
database_cross_reference: KEGG:R00716
database_cross_reference: METACYC:1.5.1.8-RXN
database_cross_reference: RHEA:19376
has_obo_namespace: reaction
id: UPa:UCR00716

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00835

Axiom
annotated source: H(2)O + NADP(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NADP(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00716

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NADP(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADPH
annotated property: database_cross_reference
annotated target: METACYC:1.5.1.8-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NADP(+) + saccharopine = 2-oxoglutarate + H(+) + L-lysine + NADPH
annotated property: database_cross_reference
annotated target: RHEA:19376

L-tyrosine + O(2) = H(2)O + L-dopa
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00733
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00082
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00355
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00082
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00355
database_cross_reference: KEGG:R00731
database_cross_reference: RHEA:34286
has_obo_namespace: reaction
id: UPa:UCR00731

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00733

Axiom
annotated source: L-tyrosine + O(2) = H(2)O + L-dopa
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-tyrosine + O(2) = H(2)O + L-dopa
annotated property: database_cross_reference
annotated target: KEGG:R00731

Rhea reaction
type: Axiom
annotated source: L-tyrosine + O(2) = H(2)O + L-dopa
annotated property: database_cross_reference
annotated target: RHEA:34286

L-arogenate + NAD(+) = CO(2) + H(+) + L-tyrosine + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00959
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00826
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00082
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00826
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00082
database_cross_reference: KEGG:R00732
database_cross_reference: METACYC:CYCLOHEXADIENYL-DEHYDROGENASE-RXN
database_cross_reference: RHEA:12259
has_obo_namespace: reaction
id: UPa:UCR00732

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00959

Axiom
annotated source: L-arogenate + NAD(+) = CO(2) + H(+) + L-tyrosine + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arogenate + NAD(+) = CO(2) + H(+) + L-tyrosine + NADH
annotated property: database_cross_reference
annotated target: KEGG:R00732

MetaCyc REACTION
type: Axiom
annotated source: L-arogenate + NAD(+) = CO(2) + H(+) + L-tyrosine + NADH
annotated property: database_cross_reference
annotated target: METACYC:CYCLOHEXADIENYL-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-arogenate + NAD(+) = CO(2) + H(+) + L-tyrosine + NADH
annotated property: database_cross_reference
annotated target: RHEA:12259

L-arogenate + NADP(+) = CO(2) + H(+) + L-tyrosine + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00960
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00826
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00082
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00826
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00082
database_cross_reference: KEGG:R00733
database_cross_reference: METACYC:RXN-5682
database_cross_reference: RHEA:15420
has_obo_namespace: reaction
id: UPa:UCR00733

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00960

Axiom
annotated source: L-arogenate + NADP(+) = CO(2) + H(+) + L-tyrosine + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arogenate + NADP(+) = CO(2) + H(+) + L-tyrosine + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00733

MetaCyc REACTION
type: Axiom
annotated source: L-arogenate + NADP(+) = CO(2) + H(+) + L-tyrosine + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN-5682
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-arogenate + NADP(+) = CO(2) + H(+) + L-tyrosine + NADPH
annotated property: database_cross_reference
annotated target: RHEA:15420

2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00338
subclass of: Restriction
  on property: part of
  some values from: UPa UER00350
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00082
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01179
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00082
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01179
database_cross_reference: KEGG:R00734
database_cross_reference: METACYC:TYROSINE-AMINOTRANSFERASE-RXN
database_cross_reference: RHEA:15096
has_obo_namespace: reaction
id: UPa:UCR00734

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00338

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00350

Axiom
annotated source: 2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: 2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R00734

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:TYROSINE-AMINOTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-tyrosine = (4-hydroxyphenyl)pyruvate + L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:15096

ATP + acetyl-CoA + bicarbonate = ADP + malonyl-CoA + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00711
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00288
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00083
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00288
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00083
database_cross_reference: KEGG:R00742
database_cross_reference: METACYC:ACETYL-COA-CARBOXYLTRANSFER-RXN
database_cross_reference: RHEA:11311
has_obo_namespace: reaction
id: UPa:UCR00742

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00711

Axiom
annotated source: ATP + acetyl-CoA + bicarbonate = ADP + malonyl-CoA + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + acetyl-CoA + bicarbonate = ADP + malonyl-CoA + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00742

MetaCyc REACTION
type: Axiom
annotated source: ATP + acetyl-CoA + bicarbonate = ADP + malonyl-CoA + phosphate
annotated property: database_cross_reference
annotated target: METACYC:ACETYL-COA-CARBOXYLTRANSFER-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + acetyl-CoA + bicarbonate = ADP + malonyl-CoA + phosphate
annotated property: database_cross_reference
annotated target: RHEA:11311

acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00797
subclass of: Restriction
  on property: part of
  some values from: UPa UER00907
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03589
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00084
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03589
database_cross_reference: KEGG:R00750
database_cross_reference: METACYC:MHPELY-RXN
database_cross_reference: RHEA:22627
has_obo_namespace: reaction
id: UPa:UCR00750

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00797

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00907

Axiom
annotated source: acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

Axiom
annotated source: acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
annotated property: database_cross_reference
annotated target: KEGG:R00750

MetaCyc REACTION
type: Axiom
annotated source: acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
annotated property: database_cross_reference
annotated target: METACYC:MHPELY-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: acetaldehyde + pyruvate = 4-hydroxy-2-oxopentanoate
annotated property: database_cross_reference
annotated target: RHEA:22627

L-threonine = acetaldehyde + glycine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00429
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00188
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00188
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00084
database_cross_reference: KEGG:R00751
database_cross_reference: METACYC:THREONINE-ALDOLASE-RXN
database_cross_reference: RHEA:19628
has_obo_namespace: reaction
id: UPa:UCR00751

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00429

Axiom
annotated source: L-threonine = acetaldehyde + glycine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-threonine = acetaldehyde + glycine
annotated property: database_cross_reference
annotated target: KEGG:R00751

MetaCyc REACTION
type: Axiom
annotated source: L-threonine = acetaldehyde + glycine
annotated property: database_cross_reference
annotated target: METACYC:THREONINE-ALDOLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-threonine = acetaldehyde + glycine
annotated property: database_cross_reference
annotated target: RHEA:19628

NAD(+) + ethanol = H(+) + NADH + acetaldehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00767
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00469
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00469
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00084
database_cross_reference: KEGG:R00754
database_cross_reference: METACYC:ALCOHOL-DEHYDROG-RXN
database_cross_reference: RHEA:25293
has_obo_namespace: reaction
id: UPa:UCR00754

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00767

Axiom
annotated source: NAD(+) + ethanol = H(+) + NADH + acetaldehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + ethanol = H(+) + NADH + acetaldehyde
annotated property: database_cross_reference
annotated target: KEGG:R00754

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + ethanol = H(+) + NADH + acetaldehyde
annotated property: database_cross_reference
annotated target: METACYC:ALCOHOL-DEHYDROG-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: NAD(+) + ethanol = H(+) + NADH + acetaldehyde
annotated property: database_cross_reference
annotated target: RHEA:25293

ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00182
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00354
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00085
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00354
database_cross_reference: KEGG:R00756
database_cross_reference: METACYC:6PFRUCTPHOS-RXN
database_cross_reference: RHEA:16112
has_obo_namespace: reaction
id: UPa:UCR00756

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00182

Axiom
annotated source: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00756

MetaCyc REACTION
type: Axiom
annotated source: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate
annotated property: database_cross_reference
annotated target: METACYC:6PFRUCTPHOS-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + D-fructose 6-phosphate = ADP + D-fructose 1,6-bisphosphate
annotated property: database_cross_reference
annotated target: RHEA:16112

H(2)O + alpha-D-glucosamine 6-phosphate = D-fructose 6-phosphate + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00684
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00352
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00352
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00085
database_cross_reference: KEGG:R00765
database_cross_reference: METACYC:GLUCOSAMINE-6-P-DEAMIN-RXN
database_cross_reference: RHEA:12175
has_obo_namespace: reaction
id: UPa:UCR00765

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00684

Axiom
annotated source: H(2)O + alpha-D-glucosamine 6-phosphate = D-fructose 6-phosphate + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + alpha-D-glucosamine 6-phosphate = D-fructose 6-phosphate + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00765

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + alpha-D-glucosamine 6-phosphate = D-fructose 6-phosphate + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:GLUCOSAMINE-6-P-DEAMIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + alpha-D-glucosamine 6-phosphate = D-fructose 6-phosphate + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:12175

D-fructose 6-phosphate + UDP-alpha-D-glucose = UDP + sucrose 6-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00545
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00029
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00015
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02591
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00029
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00085
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00015
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02591
database_cross_reference: KEGG:R00766
database_cross_reference: METACYC:SUCROSE-PHOSPHATE-SYNTHASE-RXN
database_cross_reference: RHEA:22175
has_obo_namespace: reaction
id: UPa:UCR00766

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00545

Axiom
annotated source: D-fructose 6-phosphate + UDP-alpha-D-glucose = UDP + sucrose 6-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-fructose 6-phosphate + UDP-alpha-D-glucose = UDP + sucrose 6-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00766

MetaCyc REACTION
type: Axiom
annotated source: D-fructose 6-phosphate + UDP-alpha-D-glucose = UDP + sucrose 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:SUCROSE-PHOSPHATE-SYNTHASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-fructose 6-phosphate + UDP-alpha-D-glucose = UDP + sucrose 6-phosphate
annotated property: database_cross_reference
annotated target: RHEA:22175

D-fructose 6-phosphate + L-glutamine = L-glutamate + alpha-D-glucosamine 6-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00528
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00352
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00085
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00352
database_cross_reference: KEGG:R00768
database_cross_reference: METACYC:L-GLN-FRUCT-6-P-AMINOTRANS-RXN
database_cross_reference: RHEA:13240
has_obo_namespace: reaction
id: UPa:UCR00768

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00528

Axiom
annotated source: D-fructose 6-phosphate + L-glutamine = L-glutamate + alpha-D-glucosamine 6-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-fructose 6-phosphate + L-glutamine = L-glutamate + alpha-D-glucosamine 6-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00768

MetaCyc REACTION
type: Axiom
annotated source: D-fructose 6-phosphate + L-glutamine = L-glutamate + alpha-D-glucosamine 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:L-GLN-FRUCT-6-P-AMINOTRANS-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-fructose 6-phosphate + L-glutamine = L-glutamate + alpha-D-glucosamine 6-phosphate
annotated property: database_cross_reference
annotated target: RHEA:13240

D-glucose 6-phosphate = D-fructose 6-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00181
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00092
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00092
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00085
database_cross_reference: KEGG:R00771
database_cross_reference: METACYC:PGLUCISOM-RXN
database_cross_reference: METACYC:RXN-6182
database_cross_reference: RHEA:11819
has_obo_namespace: reaction
id: UPa:UCR00771

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00181

Axiom
annotated source: D-glucose 6-phosphate = D-fructose 6-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glucose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00771

MetaCyc REACTION
type: Axiom
annotated source: D-glucose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:PGLUCISOM-RXN
source: Rhea

MetaCyc REACTION
type: Axiom
annotated source: D-glucose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:RXN-6182
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-glucose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: RHEA:11819

D-mannose 6-phosphate = D-fructose 6-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00423
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00275
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00085
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00275
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00085
database_cross_reference: KEGG:R00772
database_cross_reference: METACYC:MANNPISOM-RXN
database_cross_reference: RHEA:12359
has_obo_namespace: reaction
id: UPa:UCR00772

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00423

Axiom
annotated source: D-mannose 6-phosphate = D-fructose 6-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: D-mannose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00772

MetaCyc REACTION
type: Axiom
annotated source: D-mannose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: METACYC:MANNPISOM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-mannose 6-phosphate = D-fructose 6-phosphate
annotated property: database_cross_reference
annotated target: RHEA:12359

ATP + bicarbonate + urea = ADP + phosphate + urea-1-carboxylate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00371
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00086
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00288
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00086
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00288
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01010
database_cross_reference: KEGG:R00774
database_cross_reference: METACYC:UREA-CARBOXYLASE-RXN
database_cross_reference: RHEA:20899
has_obo_namespace: reaction
id: UPa:UCR00774

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00371

Axiom
annotated source: ATP + bicarbonate + urea = ADP + phosphate + urea-1-carboxylate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + bicarbonate + urea = ADP + phosphate + urea-1-carboxylate
annotated property: database_cross_reference
annotated target: KEGG:R00774

MetaCyc REACTION
type: Axiom
annotated source: ATP + bicarbonate + urea = ADP + phosphate + urea-1-carboxylate
annotated property: database_cross_reference
annotated target: METACYC:UREA-CARBOXYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + bicarbonate + urea = ADP + phosphate + urea-1-carboxylate
annotated property: database_cross_reference
annotated target: RHEA:20899

H(2)O + ferricytochrome c + nitric oxide = H(+) + ferrocytochrome c + nitrite
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00707
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00125
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00533
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00088
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00126
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00125
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00533
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00088
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00126
database_cross_reference: KEGG:R00783
database_cross_reference: METACYC:NITRITE-REDUCTASE-CYTOCHROME-RXN
database_cross_reference: RHEA:15236
has_obo_namespace: reaction
id: UPa:UCR00783

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00707

Axiom
annotated source: H(2)O + ferricytochrome c + nitric oxide = H(+) + ferrocytochrome c + nitrite
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + ferricytochrome c + nitric oxide = H(+) + ferrocytochrome c + nitrite
annotated property: database_cross_reference
annotated target: KEGG:R00783

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + ferricytochrome c + nitric oxide = H(+) + ferrocytochrome c + nitrite
annotated property: database_cross_reference
annotated target: METACYC:NITRITE-REDUCTASE-CYTOCHROME-RXN
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + ferricytochrome c + nitric oxide = H(+) + ferrocytochrome c + nitrite
annotated property: database_cross_reference
annotated target: RHEA:15236

H(2)O + acceptor + nitrite = nitrate + reduced acceptor
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00706
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00088
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00030
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00244
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00028
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00088
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00030
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00244
database_cross_reference: KEGG:R00798
database_cross_reference: METACYC:NITRATREDUCT-RXN
database_cross_reference: RHEA:21071
has_obo_namespace: reaction
id: UPa:UCR00798

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00706

Axiom
annotated source: H(2)O + acceptor + nitrite = nitrate + reduced acceptor
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + acceptor + nitrite = nitrate + reduced acceptor
annotated property: database_cross_reference
annotated target: KEGG:R00798

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + acceptor + nitrite = nitrate + reduced acceptor
annotated property: database_cross_reference
annotated target: METACYC:NITRATREDUCT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + acceptor + nitrite = nitrate + reduced acceptor
annotated property: database_cross_reference
annotated target: RHEA:21071

H(2)O + sucrose 6-phosphate = phosphate + sucrose
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00546
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02591
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00089
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02591
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00089
database_cross_reference: KEGG:R00805
database_cross_reference: METACYC:SUCROSE-PHOSPHATASE-RXN
database_cross_reference: RHEA:19292
has_obo_namespace: reaction
id: UPa:UCR00805

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00546

Axiom
annotated source: H(2)O + sucrose 6-phosphate = phosphate + sucrose
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + sucrose 6-phosphate = phosphate + sucrose
annotated property: database_cross_reference
annotated target: KEGG:R00805

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + sucrose 6-phosphate = phosphate + sucrose
annotated property: database_cross_reference
annotated target: METACYC:SUCROSE-PHOSPHATASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + sucrose 6-phosphate = phosphate + sucrose
annotated property: database_cross_reference
annotated target: RHEA:19292

NAD(+) + cis-1,2-dihydrobenzene-1,2-diol = H(+) + NADH + catechol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00392
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04091
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00090
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04091
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00090
database_cross_reference: KEGG:R00812
database_cross_reference: METACYC:1.3.1.19-RXN
database_cross_reference: RHEA:15460
has_obo_namespace: reaction
id: UPa:UCR00812

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00392

Axiom
annotated source: NAD(+) + cis-1,2-dihydrobenzene-1,2-diol = H(+) + NADH + catechol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + cis-1,2-dihydrobenzene-1,2-diol = H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: KEGG:R00812

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + cis-1,2-dihydrobenzene-1,2-diol = H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: METACYC:1.3.1.19-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: NAD(+) + cis-1,2-dihydrobenzene-1,2-diol = H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: RHEA:15460

(1R,6S)-1,6-dihydroxycyclohexa-2,4-dienecarboxylic acid + NAD(+) = CO(2) + H(+) + NADH + catechol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00255
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC06321
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00090
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC06321
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00090
database_cross_reference: KEGG:R00813
database_cross_reference: METACYC:1.3.1.25-RXN
database_cross_reference: RHEA:11563
has_obo_namespace: reaction
id: UPa:UCR00813

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00255

Axiom
annotated source: (1R,6S)-1,6-dihydroxycyclohexa-2,4-dienecarboxylic acid + NAD(+) = CO(2) + H(+) + NADH + catechol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (1R,6S)-1,6-dihydroxycyclohexa-2,4-dienecarboxylic acid + NAD(+) = CO(2) + H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: KEGG:R00813

MetaCyc REACTION
type: Axiom
annotated source: (1R,6S)-1,6-dihydroxycyclohexa-2,4-dienecarboxylic acid + NAD(+) = CO(2) + H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: METACYC:1.3.1.25-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (1R,6S)-1,6-dihydroxycyclohexa-2,4-dienecarboxylic acid + NAD(+) = CO(2) + H(+) + NADH + catechol
annotated property: database_cross_reference
annotated target: RHEA:11563

O(2) + catechol = cis,cis-muconate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00258
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00090
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02480
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00090
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02480
database_cross_reference: KEGG:R00817
database_cross_reference: METACYC:CATECHOL-12-DIOXYGENASE-RXN
database_cross_reference: RHEA:23855
has_obo_namespace: reaction
id: UPa:UCR00817

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00258

Axiom
annotated source: O(2) + catechol = cis,cis-muconate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O(2) + catechol = cis,cis-muconate
annotated property: database_cross_reference
annotated target: KEGG:R00817

MetaCyc REACTION
type: Axiom
annotated source: O(2) + catechol = cis,cis-muconate
annotated property: database_cross_reference
annotated target: METACYC:CATECHOL-12-DIOXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: O(2) + catechol = cis,cis-muconate
annotated property: database_cross_reference
annotated target: RHEA:23855

H(+) + NADH + O(2) + anthranilate = CO(2) + NAD(+) + NH(3) + catechol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00108
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00090
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00108
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00090
database_cross_reference: KEGG:R00823
database_cross_reference: RHEA:11079
has_obo_namespace: reaction
id: UPa:UCR00823

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01026

Axiom
annotated source: H(+) + NADH + O(2) + anthranilate = CO(2) + NAD(+) + NH(3) + catechol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(+) + NADH + O(2) + anthranilate = CO(2) + NAD(+) + NH(3) + catechol
annotated property: database_cross_reference
annotated target: KEGG:R00823

Rhea reaction
type: Axiom
annotated source: H(+) + NADH + O(2) + anthranilate = CO(2) + NAD(+) + NH(3) + catechol
annotated property: database_cross_reference
annotated target: RHEA:11079

acetyl-CoA + succinyl-CoA = 3-oxoadipyl-CoA + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00263
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02232
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00091
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02232
database_cross_reference: KEGG:R00829
database_cross_reference: METACYC:RXN-3641
database_cross_reference: RHEA:19484
has_obo_namespace: reaction
id: UPa:UCR00829

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00263

Axiom
annotated source: acetyl-CoA + succinyl-CoA = 3-oxoadipyl-CoA + CoA
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetyl-CoA + succinyl-CoA = 3-oxoadipyl-CoA + CoA
annotated property: database_cross_reference
annotated target: KEGG:R00829

MetaCyc REACTION
type: Axiom
annotated source: acetyl-CoA + succinyl-CoA = 3-oxoadipyl-CoA + CoA
annotated property: database_cross_reference
annotated target: METACYC:RXN-3641
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: acetyl-CoA + succinyl-CoA = 3-oxoadipyl-CoA + CoA
annotated property: database_cross_reference
annotated target: RHEA:19484

glycine + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00375
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00430
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00091
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00430
database_cross_reference: KEGG:R00830
database_cross_reference: METACYC:5-AMINOLEVULINIC-ACID-SYNTHASE-RXN
database_cross_reference: RHEA:12924
has_obo_namespace: reaction
id: UPa:UCR00830

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00375

Axiom
annotated source: glycine + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: glycine + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA
annotated property: database_cross_reference
annotated target: KEGG:R00830

MetaCyc REACTION
type: Axiom
annotated source: glycine + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA
annotated property: database_cross_reference
annotated target: METACYC:5-AMINOLEVULINIC-ACID-SYNTHASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: glycine + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA
annotated property: database_cross_reference
annotated target: RHEA:12924

L-arginine + succinyl-CoA = CoA + N(2)-succinyl-L-arginine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00279
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03296
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00091
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03296
database_cross_reference: KEGG:R00832
database_cross_reference: METACYC:ARGININE-N-SUCCINYLTRANSFERASE-RXN
database_cross_reference: RHEA:15188
has_obo_namespace: reaction
id: UPa:UCR00832

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00279

Axiom
annotated source: L-arginine + succinyl-CoA = CoA + N(2)-succinyl-L-arginine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-arginine + succinyl-CoA = CoA + N(2)-succinyl-L-arginine
annotated property: database_cross_reference
annotated target: KEGG:R00832

MetaCyc REACTION
type: Axiom
annotated source: L-arginine + succinyl-CoA = CoA + N(2)-succinyl-L-arginine
annotated property: database_cross_reference
annotated target: METACYC:ARGININE-N-SUCCINYLTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-arginine + succinyl-CoA = CoA + N(2)-succinyl-L-arginine
annotated property: database_cross_reference
annotated target: RHEA:15188

(R)-methylmalonyl-CoA = succinyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00910
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01213
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01213
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00091
database_cross_reference: KEGG:R00833
database_cross_reference: METACYC:METHYLMALONYL-COA-MUT-RXN
database_cross_reference: RHEA:22891
has_obo_namespace: reaction
id: UPa:UCR00833

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00910

Axiom
annotated source: (R)-methylmalonyl-CoA = succinyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (R)-methylmalonyl-CoA = succinyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R00833

MetaCyc REACTION
type: Axiom
annotated source: (R)-methylmalonyl-CoA = succinyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:METHYLMALONYL-COA-MUT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (R)-methylmalonyl-CoA = succinyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:22891

D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00408
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00092
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01236
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00092
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01236
database_cross_reference: KEGG:R00835
database_cross_reference: METACYC:RXN-14819
database_cross_reference: RHEA:15844
has_obo_namespace: reaction
id: UPa:UCR00835

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00408

Axiom
annotated source: D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00835

MetaCyc REACTION
type: Axiom
annotated source: D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN-14819
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-glucose 6-phosphate + NADP(+) = D-glucono-1,5-lactone 6-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:15844

ATP + glycerol = ADP + sn-glycerol 3-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00672
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00116
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00093
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00116
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00093
database_cross_reference: KEGG:R00847
database_cross_reference: METACYC:GLYCEROL-KIN-RXN
database_cross_reference: RHEA:21647
has_obo_namespace: reaction
id: UPa:UCR00847

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00672

Axiom
annotated source: ATP + glycerol = ADP + sn-glycerol 3-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + glycerol = ADP + sn-glycerol 3-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00847

MetaCyc REACTION
type: Axiom
annotated source: ATP + glycerol = ADP + sn-glycerol 3-phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLYCEROL-KIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + glycerol = ADP + sn-glycerol 3-phosphate
annotated property: database_cross_reference
annotated target: RHEA:21647

Quinone + sn-glycerol 3-phosphate = Hydroquinone + glycerone phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00673
subclass of: Restriction
  on property: part of
  some values from: UPa UER00674
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00093
subclass of: Restriction
  on property: has input
  some values from: UPa UPC15602
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00111
subclass of: Restriction
  on property: has output
  some values from: UPa UPC15603
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00093
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC15602
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00111
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC15603
database_cross_reference: KEGG:R00849
database_cross_reference: RHEA:18980
has_obo_namespace: reaction
id: UPa:UCR00849

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00673

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00674

Axiom
annotated source: Quinone + sn-glycerol 3-phosphate = Hydroquinone + glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: Quinone + sn-glycerol 3-phosphate = Hydroquinone + glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: Quinone + sn-glycerol 3-phosphate = Hydroquinone + glycerone phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00849

Rhea reaction
type: Axiom
annotated source: Quinone + sn-glycerol 3-phosphate = Hydroquinone + glycerone phosphate
annotated property: database_cross_reference
annotated target: RHEA:18980

acyl-CoA + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00612
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00040
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00093
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00681
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00040
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00093
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00681
database_cross_reference: KEGG:R00851
database_cross_reference: METACYC:RXN-1381
database_cross_reference: RHEA:15328
has_obo_namespace: reaction
id: UPa:UCR00851

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00612

Axiom
annotated source: acyl-CoA + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acyl-CoA + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + CoA
annotated property: database_cross_reference
annotated target: KEGG:R00851

MetaCyc REACTION
type: Axiom
annotated source: acyl-CoA + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + CoA
annotated property: database_cross_reference
annotated target: METACYC:RXN-1381
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: acyl-CoA + sn-glycerol 3-phosphate = 1-acyl-sn-glycerol 3-phosphate + CoA
annotated property: database_cross_reference
annotated target: RHEA:15328

3 H(2)O + 3 NADP(+) + hydrogen sulfide = 3 H(+) + 3 NADPH + sulfite
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00207
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00094
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00094
database_cross_reference: KEGG:R00858
database_cross_reference: METACYC:SULFITE-REDUCT-RXN
database_cross_reference: RHEA:13804
has_obo_namespace: reaction
id: UPa:UCR00858

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00207

Axiom
annotated source: 3 H(2)O + 3 NADP(+) + hydrogen sulfide = 3 H(+) + 3 NADPH + sulfite
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 3 H(2)O + 3 NADP(+) + hydrogen sulfide = 3 H(+) + 3 NADPH + sulfite
annotated property: database_cross_reference
annotated target: KEGG:R00858

MetaCyc REACTION
type: Axiom
annotated source: 3 H(2)O + 3 NADP(+) + hydrogen sulfide = 3 H(+) + 3 NADPH + sulfite
annotated property: database_cross_reference
annotated target: METACYC:SULFITE-REDUCT-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3 H(2)O + 3 NADP(+) + hydrogen sulfide = 3 H(+) + 3 NADPH + sulfite
annotated property: database_cross_reference
annotated target: RHEA:13804

3 H(2)O + hydrogen sulfide + 6 oxidized ferredoxin = 6 H(+) + 6 reduced ferredoxin + sulfite
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00208
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00139
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00094
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00138
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00139
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00094
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00138
database_cross_reference: KEGG:R00859
database_cross_reference: METACYC:SULFITE-REDUCTASE-FERREDOXIN-RXN
database_cross_reference: RHEA:23135
has_obo_namespace: reaction
id: UPa:UCR00859

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00208

Axiom
annotated source: 3 H(2)O + hydrogen sulfide + 6 oxidized ferredoxin = 6 H(+) + 6 reduced ferredoxin + sulfite
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 3 H(2)O + hydrogen sulfide + 6 oxidized ferredoxin = 6 H(+) + 6 reduced ferredoxin + sulfite
annotated property: database_cross_reference
annotated target: KEGG:R00859

MetaCyc REACTION
type: Axiom
annotated source: 3 H(2)O + hydrogen sulfide + 6 oxidized ferredoxin = 6 H(+) + 6 reduced ferredoxin + sulfite
annotated property: database_cross_reference
annotated target: METACYC:SULFITE-REDUCTASE-FERREDOXIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3 H(2)O + hydrogen sulfide + 6 oxidized ferredoxin = 6 H(+) + 6 reduced ferredoxin + sulfite
annotated property: database_cross_reference
annotated target: RHEA:23135

D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00784
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00031
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00095
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00198
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00794
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00031
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00095
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00198
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00794
database_cross_reference: KEGG:R00874
database_cross_reference: METACYC:1.1.99.28-RXN
database_cross_reference: RHEA:20640
has_obo_namespace: reaction
id: UPa:UCR00874

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00784

Axiom
annotated source: D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol
annotated property: database_cross_reference
annotated target: KEGG:R00874

MetaCyc REACTION
type: Axiom
annotated source: D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol
annotated property: database_cross_reference
annotated target: METACYC:1.1.99.28-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-fructose + D-glucose = D-glucono-1,5-lactone + D-sorbitol
annotated property: database_cross_reference
annotated target: RHEA:20640

GDP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00425
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00035
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00636
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00096
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00035
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00636
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00096
database_cross_reference: KEGG:R00883
database_cross_reference: METACYC:MANNPGUANYLTRANGDP-RXN
database_cross_reference: RHEA:12908
has_obo_namespace: reaction
id: UPa:UCR00883

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00425

Axiom
annotated source: GDP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GDP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00883

MetaCyc REACTION
type: Axiom
annotated source: GDP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + phosphate
annotated property: database_cross_reference
annotated target: METACYC:MANNPGUANYLTRANGDP-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: GDP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + phosphate
annotated property: database_cross_reference
annotated target: RHEA:12908

GTP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00930
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00044
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00636
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00096
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00044
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00636
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00096
database_cross_reference: KEGG:R00885
database_cross_reference: METACYC:2.7.7.13-RXN
database_cross_reference: RHEA:15232
has_obo_namespace: reaction
id: UPa:UCR00885

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00930

Axiom
annotated source: GTP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GTP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00885

MetaCyc REACTION
type: Axiom
annotated source: GTP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:2.7.7.13-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: GTP + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:15232

GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H(2)O
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00190
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00096
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01222
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00096
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01222
database_cross_reference: KEGG:R00888
database_cross_reference: METACYC:GDPMANDEHYDRA-RXN
database_cross_reference: RHEA:23823
has_obo_namespace: reaction
id: UPa:UCR00888

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00190

Axiom
annotated source: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H(2)O
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H(2)O
annotated property: database_cross_reference
annotated target: KEGG:R00888

MetaCyc REACTION
type: Axiom
annotated source: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H(2)O
annotated property: database_cross_reference
annotated target: METACYC:GDPMANDEHYDRA-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-D-mannose + H(2)O
annotated property: database_cross_reference
annotated target: RHEA:23823

L-cysteine + O(2) = 3-sulfino-L-alanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00537
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00097
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00606
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00097
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00606
database_cross_reference: KEGG:R00893
database_cross_reference: METACYC:CYSTEINE-DIOXYGENASE-RXN
database_cross_reference: RHEA:20444
has_obo_namespace: reaction
id: UPa:UCR00893

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00537

Axiom
annotated source: L-cysteine + O(2) = 3-sulfino-L-alanine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-cysteine + O(2) = 3-sulfino-L-alanine
annotated property: database_cross_reference
annotated target: KEGG:R00893

MetaCyc REACTION
type: Axiom
annotated source: L-cysteine + O(2) = 3-sulfino-L-alanine
annotated property: database_cross_reference
annotated target: METACYC:CYSTEINE-DIOXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-cysteine + O(2) = 3-sulfino-L-alanine
annotated property: database_cross_reference
annotated target: RHEA:20444

ATP + L-cysteine + L-glutamate = ADP + L-gamma-glutamyl-L-cysteine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00209
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00097
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00669
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00097
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00669
database_cross_reference: KEGG:R00894
database_cross_reference: METACYC:GLUTCYSLIG-RXN
database_cross_reference: RHEA:13288
has_obo_namespace: reaction
id: UPa:UCR00894

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00209

Axiom
annotated source: ATP + L-cysteine + L-glutamate = ADP + L-gamma-glutamyl-L-cysteine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + L-cysteine + L-glutamate = ADP + L-gamma-glutamyl-L-cysteine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00894

MetaCyc REACTION
type: Axiom
annotated source: ATP + L-cysteine + L-glutamate = ADP + L-gamma-glutamyl-L-cysteine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLUTCYSLIG-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + L-cysteine + L-glutamate = ADP + L-gamma-glutamyl-L-cysteine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:13288

O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00200
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00979
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00097
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00979
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00033
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00097
database_cross_reference: KEGG:R00897
database_cross_reference: METACYC:ACSERLY-RXN
database_cross_reference: RHEA:14832
has_obo_namespace: reaction
id: UPa:UCR00897

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00200

Axiom
annotated source: O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate
annotated property: database_cross_reference
annotated target: KEGG:R00897

MetaCyc REACTION
type: Axiom
annotated source: O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate
annotated property: database_cross_reference
annotated target: METACYC:ACSERLY-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: O-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate
annotated property: database_cross_reference
annotated target: RHEA:14832

L-cysteine + sulfite = L-cysteate + hydrogen sulfide
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00540
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00094
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00097
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00506
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00094
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00097
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00506
database_cross_reference: KEGG:R00901
database_cross_reference: METACYC:CYSTEINE-LYASE-RXN
database_cross_reference: RHEA:20919
has_obo_namespace: reaction
id: UPa:UCR00901

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00540

Axiom
annotated source: L-cysteine + sulfite = L-cysteate + hydrogen sulfide
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-cysteine + sulfite = L-cysteate + hydrogen sulfide
annotated property: database_cross_reference
annotated target: KEGG:R00901

MetaCyc REACTION
type: Axiom
annotated source: L-cysteine + sulfite = L-cysteate + hydrogen sulfide
annotated property: database_cross_reference
annotated target: METACYC:CYSTEINE-LYASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-cysteine + sulfite = L-cysteate + hydrogen sulfide
annotated property: database_cross_reference
annotated target: RHEA:20919

phosphate + propanoyl-CoA = CoA + propanoyl phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00509
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00100
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02876
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00100
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02876
database_cross_reference: KEGG:R00921
database_cross_reference: METACYC:PTAALT-RXN
database_cross_reference: RHEA:28049
has_obo_namespace: reaction
id: UPa:UCR00921

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00509

Axiom
annotated source: phosphate + propanoyl-CoA = CoA + propanoyl phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: phosphate + propanoyl-CoA = CoA + propanoyl phosphate
annotated property: database_cross_reference
annotated target: KEGG:R00921

MetaCyc REACTION
type: Axiom
annotated source: phosphate + propanoyl-CoA = CoA + propanoyl phosphate
annotated property: database_cross_reference
annotated target: METACYC:PTAALT-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: phosphate + propanoyl-CoA = CoA + propanoyl phosphate
annotated property: database_cross_reference
annotated target: RHEA:28049

5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00158
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00101
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00415
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00101
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00415
database_cross_reference: KEGG:R00939
database_cross_reference: METACYC:DIHYDROFOLATEREDUCT-RXN
database_cross_reference: RHEA:15012
has_obo_namespace: reaction
id: UPa:UCR00939

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00158

Axiom
annotated source: 5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R00939

MetaCyc REACTION
type: Axiom
annotated source: 5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:DIHYDROFOLATEREDUCT-RXN
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: 5,6,7,8-tetrahydrofolate + NADP(+) = 7,8-dihydrofolate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:15012

10-formyl-5,6,7,8-tetrahydrofolate + H(2)O = 5,6,7,8-tetrahydrofolate + formate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00170
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00234
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00058
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00101
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00234
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00058
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00101
database_cross_reference: KEGG:R00944
database_cross_reference: METACYC:FORMYLTHFDEFORMYL-RXN
database_cross_reference: RHEA:19836
has_obo_namespace: reaction
id: UPa:UCR00944

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00170

Axiom
annotated source: 10-formyl-5,6,7,8-tetrahydrofolate + H(2)O = 5,6,7,8-tetrahydrofolate + formate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 10-formyl-5,6,7,8-tetrahydrofolate + H(2)O = 5,6,7,8-tetrahydrofolate + formate
annotated property: database_cross_reference
annotated target: KEGG:R00944

MetaCyc REACTION
type: Axiom
annotated source: 10-formyl-5,6,7,8-tetrahydrofolate + H(2)O = 5,6,7,8-tetrahydrofolate + formate
annotated property: database_cross_reference
annotated target: METACYC:FORMYLTHFDEFORMYL-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 10-formyl-5,6,7,8-tetrahydrofolate + H(2)O = 5,6,7,8-tetrahydrofolate + formate
annotated property: database_cross_reference
annotated target: RHEA:19836

5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00914
subclass of: Restriction
  on property: part of
  some values from: UPa UER01023
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00037
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00143
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00101
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00037
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00143
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00065
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00101
database_cross_reference: KEGG:R00945
database_cross_reference: METACYC:GLYOHMETRANS-RXN
database_cross_reference: RHEA:15484
has_obo_namespace: reaction
id: UPa:UCR00945

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00914

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01023

Axiom
annotated source: 5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: 5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
annotated property: database_cross_reference
annotated target: KEGG:R00945

MetaCyc REACTION
type: Axiom
annotated source: 5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
annotated property: database_cross_reference
annotated target: METACYC:GLYOHMETRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 5,10-methylene-THF + H(2)O + glycine = 5,6,7,8-tetrahydrofolate + L-serine
annotated property: database_cross_reference
annotated target: RHEA:15484

5-methyl-THF + L-homocysteine = 5,6,7,8-tetrahydrofolate + L-methionine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00081
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00440
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00073
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00101
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00155
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00440
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00073
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00101
database_cross_reference: KEGG:R00946
database_cross_reference: METACYC:HOMOCYSMETB12-RXN
database_cross_reference: RHEA:11175
has_obo_namespace: reaction
id: UPa:UCR00946

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00081

Axiom
annotated source: 5-methyl-THF + L-homocysteine = 5,6,7,8-tetrahydrofolate + L-methionine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 5-methyl-THF + L-homocysteine = 5,6,7,8-tetrahydrofolate + L-methionine
annotated property: database_cross_reference
annotated target: KEGG:R00946

MetaCyc REACTION
type: Axiom
annotated source: 5-methyl-THF + L-homocysteine = 5,6,7,8-tetrahydrofolate + L-methionine
annotated property: database_cross_reference
annotated target: METACYC:HOMOCYSMETB12-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 5-methyl-THF + L-homocysteine = 5,6,7,8-tetrahydrofolate + L-methionine
annotated property: database_cross_reference
annotated target: RHEA:11175

CTP + alpha-D-glucose 1-phosphate = CDP-glucose + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00511
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00063
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00103
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00501
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00063
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00103
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00501
database_cross_reference: KEGG:R00956
database_cross_reference: METACYC:2.7.7.33-RXN
database_cross_reference: RHEA:18216
has_obo_namespace: reaction
id: UPa:UCR00956

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00511

Axiom
annotated source: CTP + alpha-D-glucose 1-phosphate = CDP-glucose + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: CTP + alpha-D-glucose 1-phosphate = CDP-glucose + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R00956

MetaCyc REACTION
type: Axiom
annotated source: CTP + alpha-D-glucose 1-phosphate = CDP-glucose + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:2.7.7.33-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: CTP + alpha-D-glucose 1-phosphate = CDP-glucose + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:18216

ATP + uridine = ADP + UMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00637
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00299
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00105
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00299
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00105
database_cross_reference: KEGG:R00964
database_cross_reference: METACYC:URIDINEKIN-RXN
database_cross_reference: RHEA:16828
has_obo_namespace: reaction
id: UPa:UCR00964

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00637

Axiom
annotated source: ATP + uridine = ADP + UMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + uridine = ADP + UMP
annotated property: database_cross_reference
annotated target: KEGG:R00964

MetaCyc REACTION
type: Axiom
annotated source: ATP + uridine = ADP + UMP
annotated property: database_cross_reference
annotated target: METACYC:URIDINEKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + uridine = ADP + UMP
annotated property: database_cross_reference
annotated target: RHEA:16828

orotidine 5'-phosphate = CO(2) + UMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00120
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01103
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00105
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01103
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00105
database_cross_reference: KEGG:R00965
database_cross_reference: METACYC:OROTPDECARB-RXN
database_cross_reference: RHEA:11599
has_obo_namespace: reaction
id: UPa:UCR00965

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00120

Axiom
annotated source: orotidine 5'-phosphate = CO(2) + UMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: orotidine 5'-phosphate = CO(2) + UMP
annotated property: database_cross_reference
annotated target: KEGG:R00965

MetaCyc REACTION
type: Axiom
annotated source: orotidine 5'-phosphate = CO(2) + UMP
annotated property: database_cross_reference
annotated target: METACYC:OROTPDECARB-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: orotidine 5'-phosphate = CO(2) + UMP
annotated property: database_cross_reference
annotated target: RHEA:11599

UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00636
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00105
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00106
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00105
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00106
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
database_cross_reference: KEGG:R00966
database_cross_reference: METACYC:URACIL-PRIBOSYLTRANS-RXN
database_cross_reference: RHEA:13020
has_obo_namespace: reaction
id: UPa:UCR00966

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00636

Axiom
annotated source: UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil
annotated property: database_cross_reference
annotated target: KEGG:R00966

MetaCyc REACTION
type: Axiom
annotated source: UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil
annotated property: database_cross_reference
annotated target: METACYC:URACIL-PRIBOSYLTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil
annotated property: database_cross_reference
annotated target: RHEA:13020

H(2)O + cytosine = NH(3) + uracil
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00635
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00380
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00106
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00380
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00106
database_cross_reference: KEGG:R00974
database_cross_reference: METACYC:CYTDEAM-RXN
database_cross_reference: RHEA:20608
has_obo_namespace: reaction
id: UPa:UCR00974

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00635

Axiom
annotated source: H(2)O + cytosine = NH(3) + uracil
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + cytosine = NH(3) + uracil
annotated property: database_cross_reference
annotated target: KEGG:R00974

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + cytosine = NH(3) + uracil
annotated property: database_cross_reference
annotated target: METACYC:CYTDEAM-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + cytosine = NH(3) + uracil
annotated property: database_cross_reference
annotated target: RHEA:20608

H(2)O + acceptor + uracil = barbiturate + reduced acceptor
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00643
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00106
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00030
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00813
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00028
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00106
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00030
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00813
database_cross_reference: KEGG:R00976
database_cross_reference: METACYC:URACIL-DEHYDROGENASE-RXN
database_cross_reference: RHEA:22755
has_obo_namespace: reaction
id: UPa:UCR00976

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00643

Axiom
annotated source: H(2)O + acceptor + uracil = barbiturate + reduced acceptor
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + acceptor + uracil = barbiturate + reduced acceptor
annotated property: database_cross_reference
annotated target: KEGG:R00976

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + acceptor + uracil = barbiturate + reduced acceptor
annotated property: database_cross_reference
annotated target: METACYC:URACIL-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + acceptor + uracil = barbiturate + reduced acceptor
annotated property: database_cross_reference
annotated target: RHEA:22755

NH(3) + chorismate = H(2)O + anthranilate + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00040
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00251
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00108
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00251
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00108
database_cross_reference: KEGG:R00985
has_obo_namespace: reaction
id: UPa:UCR00985

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00040

Axiom
annotated source: NH(3) + chorismate = H(2)O + anthranilate + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NH(3) + chorismate = H(2)O + anthranilate + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R00985

H(2)O + L-kynurenine = L-alanine + anthranilate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00455
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00328
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00041
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00108
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00328
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00041
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00108
database_cross_reference: KEGG:R00987
database_cross_reference: METACYC:KYNURENINASE-RXN
database_cross_reference: RHEA:16816
has_obo_namespace: reaction
id: UPa:UCR00987

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00455

Axiom
annotated source: H(2)O + L-kynurenine = L-alanine + anthranilate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-kynurenine = L-alanine + anthranilate
annotated property: database_cross_reference
annotated target: KEGG:R00987

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-kynurenine = L-alanine + anthranilate
annotated property: database_cross_reference
annotated target: METACYC:KYNURENINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + L-kynurenine = L-alanine + anthranilate
annotated property: database_cross_reference
annotated target: RHEA:16816

2-oxobutanoate + CO(2) + H(+) + NADH = D-erythro-3-methylmalic acid + NAD(+)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00069
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00109
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC06032
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00109
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC06032
database_cross_reference: KEGG:R00994
database_cross_reference: RHEA:32718
has_obo_namespace: reaction
id: UPa:UCR00994

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00069

Axiom
annotated source: 2-oxobutanoate + CO(2) + H(+) + NADH = D-erythro-3-methylmalic acid + NAD(+)
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxobutanoate + CO(2) + H(+) + NADH = D-erythro-3-methylmalic acid + NAD(+)
annotated property: database_cross_reference
annotated target: KEGG:R00994

Rhea reaction
type: Axiom
annotated source: 2-oxobutanoate + CO(2) + H(+) + NADH = D-erythro-3-methylmalic acid + NAD(+)
annotated property: database_cross_reference
annotated target: RHEA:32718

L-threonine = 2-oxobutanoate + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00054
subclass of: Restriction
  on property: part of
  some values from: UPa UER00507
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00188
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00109
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00188
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00109
database_cross_reference: KEGG:R00996
database_cross_reference: METACYC:THREDEHYD-RXN
database_cross_reference: RHEA:22111
has_obo_namespace: reaction
id: UPa:UCR00996

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00054

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00507

Axiom
annotated source: L-threonine = 2-oxobutanoate + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: L-threonine = 2-oxobutanoate + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-threonine = 2-oxobutanoate + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R00996

MetaCyc REACTION
type: Axiom
annotated source: L-threonine = 2-oxobutanoate + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:THREDEHYD-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-threonine = 2-oxobutanoate + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:22111

H(2)O + L-cystathionine = 2-oxobutanoate + L-cysteine + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00202
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02291
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00097
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00109
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02291
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00097
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00109
database_cross_reference: KEGG:R01001
database_cross_reference: METACYC:RXN-15130
database_cross_reference: RHEA:14008
has_obo_namespace: reaction
id: UPa:UCR01001

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00202

Axiom
annotated source: H(2)O + L-cystathionine = 2-oxobutanoate + L-cysteine + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-cystathionine = 2-oxobutanoate + L-cysteine + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R01001

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-cystathionine = 2-oxobutanoate + L-cysteine + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:RXN-15130
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + L-cystathionine = 2-oxobutanoate + L-cysteine + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:14008

ATP + glycerone = ADP + glycerone phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00669
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00184
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00111
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00184
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00111
database_cross_reference: KEGG:R01011
database_cross_reference: METACYC:GLYCERONE-KINASE-RXN
database_cross_reference: RHEA:15776
has_obo_namespace: reaction
id: UPa:UCR01011

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00669

Axiom
annotated source: ATP + glycerone = ADP + glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + glycerone = ADP + glycerone phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01011

MetaCyc REACTION
type: Axiom
annotated source: ATP + glycerone = ADP + glycerone phosphate
annotated property: database_cross_reference
annotated target: METACYC:GLYCERONE-KINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + glycerone = ADP + glycerone phosphate
annotated property: database_cross_reference
annotated target: RHEA:15776

D-glyceraldehyde 3-phosphate = glycerone phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00189
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00111
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00118
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00111
database_cross_reference: KEGG:R01015
database_cross_reference: METACYC:TRIOSEPISOMERIZATION-RXN
database_cross_reference: RHEA:18588
has_obo_namespace: reaction
id: UPa:UCR01015

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00189

Axiom
annotated source: D-glyceraldehyde 3-phosphate = glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate = glycerone phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01015

MetaCyc REACTION
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate = glycerone phosphate
annotated property: database_cross_reference
annotated target: METACYC:TRIOSEPISOMERIZATION-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate = glycerone phosphate
annotated property: database_cross_reference
annotated target: RHEA:18588

ATP + choline = ADP + phosphocholine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00737
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00114
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00588
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00114
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00588
database_cross_reference: KEGG:R01021
database_cross_reference: METACYC:CHOLINE-KINASE-RXN
database_cross_reference: RHEA:12840
has_obo_namespace: reaction
id: UPa:UCR01021

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00737

Axiom
annotated source: ATP + choline = ADP + phosphocholine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + choline = ADP + phosphocholine
annotated property: database_cross_reference
annotated target: KEGG:R01021

MetaCyc REACTION
type: Axiom
annotated source: ATP + choline = ADP + phosphocholine
annotated property: database_cross_reference
annotated target: METACYC:CHOLINE-KINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + choline = ADP + phosphocholine
annotated property: database_cross_reference
annotated target: RHEA:12840

O(2) + choline = H(2)O(2) + betaine aldehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00384
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00114
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00576
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00114
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00576
database_cross_reference: KEGG:R01022
database_cross_reference: METACYC:CHOLINE-OXIDASE-RXN
database_cross_reference: RHEA:13508
has_obo_namespace: reaction
id: UPa:UCR01022

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00384

Axiom
annotated source: O(2) + choline = H(2)O(2) + betaine aldehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O(2) + choline = H(2)O(2) + betaine aldehyde
annotated property: database_cross_reference
annotated target: KEGG:R01022

MetaCyc REACTION
type: Axiom
annotated source: O(2) + choline = H(2)O(2) + betaine aldehyde
annotated property: database_cross_reference
annotated target: METACYC:CHOLINE-OXIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: O(2) + choline = H(2)O(2) + betaine aldehyde
annotated property: database_cross_reference
annotated target: RHEA:13508

acceptor + choline = betaine aldehyde + reduced acceptor
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00385
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00028
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00114
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00030
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00576
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00028
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00114
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00030
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00576
database_cross_reference: KEGG:R01025
database_cross_reference: METACYC:CHD-RXN
database_cross_reference: RHEA:17436
has_obo_namespace: reaction
id: UPa:UCR01025

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00385

Axiom
annotated source: acceptor + choline = betaine aldehyde + reduced acceptor
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acceptor + choline = betaine aldehyde + reduced acceptor
annotated property: database_cross_reference
annotated target: KEGG:R01025

MetaCyc REACTION
type: Axiom
annotated source: acceptor + choline = betaine aldehyde + reduced acceptor
annotated property: database_cross_reference
annotated target: METACYC:CHD-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: acceptor + choline = betaine aldehyde + reduced acceptor
annotated property: database_cross_reference
annotated target: RHEA:17436

H(2)O + choline sulfate = choline + sulfate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00431
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00919
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00059
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00114
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00919
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00059
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00114
database_cross_reference: KEGG:R01028
database_cross_reference: METACYC:CHOLINE-SULFATASE-RXN
database_cross_reference: RHEA:20823
has_obo_namespace: reaction
id: UPa:UCR01028

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00431

Axiom
annotated source: H(2)O + choline sulfate = choline + sulfate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + choline sulfate = choline + sulfate
annotated property: database_cross_reference
annotated target: KEGG:R01028

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + choline sulfate = choline + sulfate
annotated property: database_cross_reference
annotated target: METACYC:CHOLINE-SULFATASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + choline sulfate = choline + sulfate
annotated property: database_cross_reference
annotated target: RHEA:20823

NAD(+) + glycerol = H(+) + NADH + glycerone
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00668
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00116
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00184
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00116
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00184
database_cross_reference: KEGG:R01034
database_cross_reference: METACYC:GLYCDEH-RXN
database_cross_reference: RHEA:13772
has_obo_namespace: reaction
id: UPa:UCR01034

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00668

Axiom
annotated source: NAD(+) + glycerol = H(+) + NADH + glycerone
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + glycerol = H(+) + NADH + glycerone
annotated property: database_cross_reference
annotated target: KEGG:R01034

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + glycerol = H(+) + NADH + glycerone
annotated property: database_cross_reference
annotated target: METACYC:GLYCDEH-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: NAD(+) + glycerol = H(+) + NADH + glycerone
annotated property: database_cross_reference
annotated target: RHEA:13772

glycerol = 3-hydroxypropanal + H(2)O
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00670
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00116
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00969
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00116
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00969
database_cross_reference: KEGG:R01047
database_cross_reference: METACYC:GLYCEROL-DEHYDRATASE-RXN
database_cross_reference: RHEA:19768
has_obo_namespace: reaction
id: UPa:UCR01047

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00670

Axiom
annotated source: glycerol = 3-hydroxypropanal + H(2)O
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: glycerol = 3-hydroxypropanal + H(2)O
annotated property: database_cross_reference
annotated target: KEGG:R01047

MetaCyc REACTION
type: Axiom
annotated source: glycerol = 3-hydroxypropanal + H(2)O
annotated property: database_cross_reference
annotated target: METACYC:GLYCEROL-DEHYDRATASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: glycerol = 3-hydroxypropanal + H(2)O
annotated property: database_cross_reference
annotated target: RHEA:19768

ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00172
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00117
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00117
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
database_cross_reference: KEGG:R01049
database_cross_reference: METACYC:PRPPSYN-RXN
database_cross_reference: RHEA:15612
has_obo_namespace: reaction
id: UPa:UCR01049

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00172

Axiom
annotated source: ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP
annotated property: database_cross_reference
annotated target: KEGG:R01049

MetaCyc REACTION
type: Axiom
annotated source: ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP
annotated property: database_cross_reference
annotated target: METACYC:PRPPSYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + AMP
annotated property: database_cross_reference
annotated target: RHEA:15612

ATP + D-ribose = ADP + D-ribose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00889
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00121
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00117
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00121
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00117
database_cross_reference: KEGG:R01051
database_cross_reference: METACYC:RIBOKIN-RXN
database_cross_reference: RHEA:13700
has_obo_namespace: reaction
id: UPa:UCR01051

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00889

Axiom
annotated source: ATP + D-ribose = ADP + D-ribose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + D-ribose = ADP + D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01051

MetaCyc REACTION
type: Axiom
annotated source: ATP + D-ribose = ADP + D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:RIBOKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + D-ribose = ADP + D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:13700

D-ribose 5-phosphate = D-ribulose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00412
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00117
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00199
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00117
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00199
database_cross_reference: KEGG:R01056
database_cross_reference: METACYC:RIB5PISOM-RXN
database_cross_reference: RHEA:14660
has_obo_namespace: reaction
id: UPa:UCR01056

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00412

Axiom
annotated source: D-ribose 5-phosphate = D-ribulose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: D-ribose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01056

MetaCyc REACTION
type: Axiom
annotated source: D-ribose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:RIB5PISOM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-ribose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:14660

alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00173
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00620
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00117
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00620
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00117
database_cross_reference: KEGG:R01057
database_cross_reference: METACYC:PPENTOMUT-RXN
database_cross_reference: RHEA:18796
has_obo_namespace: reaction
id: UPa:UCR01057

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00173

Axiom
annotated source: alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01057

MetaCyc REACTION
type: Axiom
annotated source: alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:PPENTOMUT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:18796

D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00184
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00236
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00118
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00236
database_cross_reference: KEGG:R01061
database_cross_reference: METACYC:GAPOXNPHOSPHN-RXN
database_cross_reference: RHEA:10303
has_obo_namespace: reaction
id: UPa:UCR01061

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00184

Axiom
annotated source: D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01061

MetaCyc REACTION
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:GAPOXNPHOSPHN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-glyceraldehyde 3-phosphate + NAD(+) + phosphate = 3-phospho-D-glyceroyl phosphate + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:10303

6-phospho-2-dehydro-3-deoxy-D-galactonic acid = D-glyceraldehyde 3-phosphate + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00520
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01286
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01286
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00118
database_cross_reference: KEGG:R01064
database_cross_reference: METACYC:DEHYDDEOXPHOSGALACT-ALDOL-RXN
database_cross_reference: RHEA:24467
has_obo_namespace: reaction
id: UPa:UCR01064

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00520

Axiom
annotated source: 6-phospho-2-dehydro-3-deoxy-D-galactonic acid = D-glyceraldehyde 3-phosphate + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 6-phospho-2-dehydro-3-deoxy-D-galactonic acid = D-glyceraldehyde 3-phosphate + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R01064

MetaCyc REACTION
type: Axiom
annotated source: 6-phospho-2-dehydro-3-deoxy-D-galactonic acid = D-glyceraldehyde 3-phosphate + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:DEHYDDEOXPHOSGALACT-ALDOL-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 6-phospho-2-dehydro-3-deoxy-D-galactonic acid = D-glyceraldehyde 3-phosphate + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:24467

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00468
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00673
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00084
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00673
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00084
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00118
database_cross_reference: KEGG:R01066
database_cross_reference: METACYC:DEOXYRIBOSE-P-ALD-RXN
database_cross_reference: RHEA:12824
has_obo_namespace: reaction
id: UPa:UCR01066

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00468

Axiom
annotated source: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
annotated property: database_cross_reference
annotated target: KEGG:R01066

MetaCyc REACTION
type: Axiom
annotated source: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
annotated property: database_cross_reference
annotated target: METACYC:DEOXYRIBOSE-P-ALD-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde
annotated property: database_cross_reference
annotated target: RHEA:12824

D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00183
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00354
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00111
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00354
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00111
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00118
database_cross_reference: KEGG:R01068
database_cross_reference: METACYC:F16ALDOLASE-RXN
database_cross_reference: RHEA:14732
has_obo_namespace: reaction
id: UPa:UCR01068

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00183

Axiom
annotated source: D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01068

MetaCyc REACTION
type: Axiom
annotated source: D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: METACYC:F16ALDOLASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: RHEA:14732

D-tagatose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00716
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03785
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00111
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00118
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03785
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00111
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00118
database_cross_reference: KEGG:R01069
database_cross_reference: METACYC:TAGAALDOL-RXN
database_cross_reference: RHEA:22951
has_obo_namespace: reaction
id: UPa:UCR01069

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00716

Axiom
annotated source: D-tagatose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-tagatose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01069

MetaCyc REACTION
type: Axiom
annotated source: D-tagatose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: METACYC:TAGAALDOL-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-tagatose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate
annotated property: database_cross_reference
annotated target: RHEA:22951

1-(5-phospho-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02739
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02739
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
database_cross_reference: KEGG:R01071
database_cross_reference: METACYC:ATPPHOSPHORIBOSYLTRANS-RXN
database_cross_reference: RHEA:18476
has_obo_namespace: reaction
id: UPa:UCR01071

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00006

Axiom
annotated source: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP
annotated property: database_cross_reference
annotated target: KEGG:R01071

MetaCyc REACTION
type: Axiom
annotated source: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP
annotated property: database_cross_reference
annotated target: METACYC:ATPPHOSPHORIBOSYLTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP
annotated property: database_cross_reference
annotated target: RHEA:18476

5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + H(2)O + L-glutamine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00124
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03090
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03090
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
database_cross_reference: KEGG:R01072
database_cross_reference: METACYC:PRPPAMIDOTRANS-RXN
database_cross_reference: RHEA:14908
has_obo_namespace: reaction
id: UPa:UCR01072

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00124

Axiom
annotated source: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + H(2)O + L-glutamine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + H(2)O + L-glutamine
annotated property: database_cross_reference
annotated target: KEGG:R01072

MetaCyc REACTION
type: Axiom
annotated source: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + H(2)O + L-glutamine
annotated property: database_cross_reference
annotated target: METACYC:PRPPAMIDOTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + H(2)O + L-glutamine
annotated property: database_cross_reference
annotated target: RHEA:14908

N-(5-phospho-beta-D-ribosyl)anthranilic acid + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00041
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04302
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00108
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04302
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00108
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
database_cross_reference: KEGG:R01073
database_cross_reference: METACYC:PRTRANS-RXN
database_cross_reference: RHEA:11771
has_obo_namespace: reaction
id: UPa:UCR01073

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00041

Axiom
annotated source: N-(5-phospho-beta-D-ribosyl)anthranilic acid + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: N-(5-phospho-beta-D-ribosyl)anthranilic acid + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate
annotated property: database_cross_reference
annotated target: KEGG:R01073

MetaCyc REACTION
type: Axiom
annotated source: N-(5-phospho-beta-D-ribosyl)anthranilic acid + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate
annotated property: database_cross_reference
annotated target: METACYC:PRTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: N-(5-phospho-beta-D-ribosyl)anthranilic acid + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate
annotated property: database_cross_reference
annotated target: RHEA:11771

2 H(+) + 2 S-adenosyl-L-methionine + dethiobiotin + 2 e- + sulfur donor = 2 5'-deoxyadenosine + 2 L-methionine + biotin
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00162
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00019
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01909
subclass of: Restriction
  on property: has input
  some values from: UPa UPC05359
subclass of: Restriction
  on property: has input
  some values from: UPa UPC17023
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00073
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00120
subclass of: Restriction
  on property: has output
  some values from: UPa UPC05198
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00019
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01909
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC05359
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC17023
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00073
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00120
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC05198
database_cross_reference: KEGG:R01078
database_cross_reference: METACYC:2.8.1.6-RXN
database_cross_reference: RHEA:22063
has_obo_namespace: reaction
id: UPa:UCR01078

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00162

Axiom
annotated source: 2 H(+) + 2 S-adenosyl-L-methionine + dethiobiotin + 2 e- + sulfur donor = 2 5'-deoxyadenosine + 2 L-methionine + biotin
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2 H(+) + 2 S-adenosyl-L-methionine + dethiobiotin + 2 e- + sulfur donor = 2 5'-deoxyadenosine + 2 L-methionine + biotin
annotated property: database_cross_reference
annotated target: KEGG:R01078

MetaCyc REACTION
type: Axiom
annotated source: 2 H(+) + 2 S-adenosyl-L-methionine + dethiobiotin + 2 e- + sulfur donor = 2 5'-deoxyadenosine + 2 L-methionine + biotin
annotated property: database_cross_reference
annotated target: METACYC:2.8.1.6-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2 H(+) + 2 S-adenosyl-L-methionine + dethiobiotin + 2 e- + sulfur donor = 2 5'-deoxyadenosine + 2 L-methionine + biotin
annotated property: database_cross_reference
annotated target: RHEA:22063

H(2)O + uridine = D-ribose + uracil
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00634
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00299
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00106
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00121
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00299
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00106
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00121
database_cross_reference: KEGG:R01080
database_cross_reference: METACYC:URIDINE-NUCLEOSIDASE-RXN
database_cross_reference: RHEA:15580
has_obo_namespace: reaction
id: UPa:UCR01080

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00634

Axiom
annotated source: H(2)O + uridine = D-ribose + uracil
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + uridine = D-ribose + uracil
annotated property: database_cross_reference
annotated target: KEGG:R01080

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + uridine = D-ribose + uracil
annotated property: database_cross_reference
annotated target: METACYC:URIDINE-NUCLEOSIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + uridine = D-ribose + uracil
annotated property: database_cross_reference
annotated target: RHEA:15580

(S)-malate = H(2)O + fumarate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00149
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00122
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00149
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00122
database_cross_reference: KEGG:R01082
database_cross_reference: METACYC:FUMHYDR-RXN
database_cross_reference: RHEA:12463
has_obo_namespace: reaction
id: UPa:UCR01082

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01007

Axiom
annotated source: (S)-malate = H(2)O + fumarate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-malate = H(2)O + fumarate
annotated property: database_cross_reference
annotated target: KEGG:R01082

MetaCyc REACTION
type: Axiom
annotated source: (S)-malate = H(2)O + fumarate
annotated property: database_cross_reference
annotated target: METACYC:FUMHYDR-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (S)-malate = H(2)O + fumarate
annotated property: database_cross_reference
annotated target: RHEA:12463

N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00336
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03794
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00122
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03794
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00122
database_cross_reference: KEGG:R01083
database_cross_reference: METACYC:AMPSYN-RXN
database_cross_reference: RHEA:16856
has_obo_namespace: reaction
id: UPa:UCR01083

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00336

Axiom
annotated source: N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate
annotated property: database_cross_reference
annotated target: KEGG:R01083

MetaCyc REACTION
type: Axiom
annotated source: N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate
annotated property: database_cross_reference
annotated target: METACYC:AMPSYN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate
annotated property: database_cross_reference
annotated target: RHEA:16856

(N(omega)-L-arginino)succinate = L-arginine + fumarate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00114
subclass of: Restriction
  on property: part of
  some values from: UPa UER00273
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03406
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00062
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00122
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03406
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00062
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00122
database_cross_reference: KEGG:R01086
database_cross_reference: METACYC:ARGSUCCINLYA-RXN
database_cross_reference: RHEA:24023
has_obo_namespace: reaction
id: UPa:UCR01086

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00114

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00273

Axiom
annotated source: (N(omega)-L-arginino)succinate = L-arginine + fumarate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: (N(omega)-L-arginino)succinate = L-arginine + fumarate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (N(omega)-L-arginino)succinate = L-arginine + fumarate
annotated property: database_cross_reference
annotated target: KEGG:R01086

MetaCyc REACTION
type: Axiom
annotated source: (N(omega)-L-arginino)succinate = L-arginine + fumarate
annotated property: database_cross_reference
annotated target: METACYC:ARGSUCCINLYA-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (N(omega)-L-arginino)succinate = L-arginine + fumarate
annotated property: database_cross_reference
annotated target: RHEA:24023

H(2)O + L-leucine + NAD(+) = 4-methyl-2-oxopentanoate + H(+) + NADH + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00858
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00123
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00233
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00123
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00233
database_cross_reference: KEGG:R01088
database_cross_reference: METACYC:LEUCINE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:12223
has_obo_namespace: reaction
id: UPa:UCR01088

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00858

Axiom
annotated source: H(2)O + L-leucine + NAD(+) = 4-methyl-2-oxopentanoate + H(+) + NADH + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-leucine + NAD(+) = 4-methyl-2-oxopentanoate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R01088

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-leucine + NAD(+) = 4-methyl-2-oxopentanoate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:LEUCINE-DEHYDROGENASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-leucine + NAD(+) = 4-methyl-2-oxopentanoate + H(+) + NADH + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:12223

2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00073
subclass of: Restriction
  on property: part of
  some values from: UPa UER00857
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00123
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00233
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00123
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00233
database_cross_reference: KEGG:R01090
database_cross_reference: METACYC:BRANCHED-CHAINAMINOTRANSFERLEU-RXN
database_cross_reference: RHEA:18324
has_obo_namespace: reaction
id: UPa:UCR01090

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00073

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00857

Axiom
annotated source: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

Axiom
annotated source: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R01090

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:BRANCHED-CHAINAMINOTRANSFERLEU-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:18324

(R)-5-diphosphomevalonate + ATP = ADP + CO(2) + isopentenyl diphosphate + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00100
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01143
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00129
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01143
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00129
database_cross_reference: KEGG:R01121
database_cross_reference: METACYC:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
database_cross_reference: RHEA:23735
has_obo_namespace: reaction
id: UPa:UCR01121

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00100

Axiom
annotated source: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + isopentenyl diphosphate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + isopentenyl diphosphate + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01121

MetaCyc REACTION
type: Axiom
annotated source: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + isopentenyl diphosphate + phosphate
annotated property: database_cross_reference
annotated target: METACYC:DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + isopentenyl diphosphate + phosphate
annotated property: database_cross_reference
annotated target: RHEA:23735

isopentenyl diphosphate = dimethylallyl diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00104
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00129
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00235
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00129
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00235
database_cross_reference: KEGG:R01123
database_cross_reference: METACYC:IPPISOM-RXN
database_cross_reference: RHEA:23287
has_obo_namespace: reaction
id: UPa:UCR01123

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00104

Axiom
annotated source: isopentenyl diphosphate = dimethylallyl diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: isopentenyl diphosphate = dimethylallyl diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R01123

MetaCyc REACTION
type: Axiom
annotated source: isopentenyl diphosphate = dimethylallyl diphosphate
annotated property: database_cross_reference
annotated target: METACYC:IPPISOM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: isopentenyl diphosphate = dimethylallyl diphosphate
annotated property: database_cross_reference
annotated target: RHEA:23287

H(2)O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00135
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04734
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00130
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04734
database_cross_reference: KEGG:R01127
database_cross_reference: METACYC:IMPCYCLOHYDROLASE-RXN
database_cross_reference: RHEA:18448
has_obo_namespace: reaction
id: UPa:UCR01127

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00135

Axiom
annotated source: H(2)O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
annotated property: database_cross_reference
annotated target: KEGG:R01127

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
annotated property: database_cross_reference
annotated target: METACYC:IMPCYCLOHYDROLASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + IMP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
annotated property: database_cross_reference
annotated target: RHEA:18448

H(2)O + IMP + NAD(+) = H(+) + NADH + XMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00295
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00655
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00130
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00655
database_cross_reference: KEGG:R01130
database_cross_reference: METACYC:IMP-DEHYDROG-RXN
database_cross_reference: RHEA:11711
has_obo_namespace: reaction
id: UPa:UCR01130

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00295

Axiom
annotated source: H(2)O + IMP + NAD(+) = H(+) + NADH + XMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + IMP + NAD(+) = H(+) + NADH + XMP
annotated property: database_cross_reference
annotated target: KEGG:R01130

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + IMP + NAD(+) = H(+) + NADH + XMP
annotated property: database_cross_reference
annotated target: METACYC:IMP-DEHYDROG-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + IMP + NAD(+) = H(+) + NADH + XMP
annotated property: database_cross_reference
annotated target: RHEA:11711

ATP + inosine = ADP + IMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00647
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00294
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00294
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00130
database_cross_reference: KEGG:R01131
database_cross_reference: METACYC:INOSINEKIN-RXN
database_cross_reference: RHEA:21143
has_obo_namespace: reaction
id: UPa:UCR01131

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00647

Axiom
annotated source: ATP + inosine = ADP + IMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + inosine = ADP + IMP
annotated property: database_cross_reference
annotated target: KEGG:R01131

MetaCyc REACTION
type: Axiom
annotated source: ATP + inosine = ADP + IMP
annotated property: database_cross_reference
annotated target: METACYC:INOSINEKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + inosine = ADP + IMP
annotated property: database_cross_reference
annotated target: RHEA:21143

IMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00648
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00262
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00130
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00262
database_cross_reference: KEGG:R01132
database_cross_reference: METACYC:HYPOXANPRIBOSYLTRAN-RXN
database_cross_reference: RHEA:17976
has_obo_namespace: reaction
id: UPa:UCR01132

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00648

Axiom
annotated source: IMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: IMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine
annotated property: database_cross_reference
annotated target: KEGG:R01132

MetaCyc REACTION
type: Axiom
annotated source: IMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine
annotated property: database_cross_reference
annotated target: METACYC:HYPOXANPRIBOSYLTRAN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: IMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine
annotated property: database_cross_reference
annotated target: RHEA:17976

GTP + IMP + L-aspartate = GDP + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00335
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00044
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00130
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00035
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03794
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00044
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00130
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00035
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03794
database_cross_reference: KEGG:R01135
database_cross_reference: METACYC:ADENYLOSUCCINATE-SYNTHASE-RXN
database_cross_reference: RHEA:15756
has_obo_namespace: reaction
id: UPa:UCR01135

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00335

Axiom
annotated source: GTP + IMP + L-aspartate = GDP + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: GTP + IMP + L-aspartate = GDP + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01135

MetaCyc REACTION
type: Axiom
annotated source: GTP + IMP + L-aspartate = GDP + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate
annotated property: database_cross_reference
annotated target: METACYC:ADENYLOSUCCINATE-SYNTHASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: GTP + IMP + L-aspartate = GDP + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate
annotated property: database_cross_reference
annotated target: RHEA:15756

H(2)O + O(2) + putrescine = 4-aminobutanal + H(2)O(2) + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00289
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00027
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00555
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00134
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00027
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00555
database_cross_reference: KEGG:R01151
database_cross_reference: METACYC:PUTRESCINE-OXIDASE-RXN
database_cross_reference: RHEA:18276
has_obo_namespace: reaction
id: UPa:UCR01151

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00289

Axiom
annotated source: H(2)O + O(2) + putrescine = 4-aminobutanal + H(2)O(2) + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + O(2) + putrescine = 4-aminobutanal + H(2)O(2) + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R01151

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + O(2) + putrescine = 4-aminobutanal + H(2)O(2) + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:PUTRESCINE-OXIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + O(2) + putrescine = 4-aminobutanal + H(2)O(2) + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:18276

H(2)O + N-carbamoylputrescine = CO(2) + NH(3) + putrescine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00286
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00436
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00436
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00134
database_cross_reference: KEGG:R01152
database_cross_reference: METACYC:N-CARBAMOYLPUTRESCINE-AMIDASE-RXN
database_cross_reference: RHEA:22287
has_obo_namespace: reaction
id: UPa:UCR01152

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00286

Axiom
annotated source: H(2)O + N-carbamoylputrescine = CO(2) + NH(3) + putrescine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N-carbamoylputrescine = CO(2) + NH(3) + putrescine
annotated property: database_cross_reference
annotated target: KEGG:R01152

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N-carbamoylputrescine = CO(2) + NH(3) + putrescine
annotated property: database_cross_reference
annotated target: METACYC:N-CARBAMOYLPUTRESCINE-AMIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + N-carbamoylputrescine = CO(2) + NH(3) + putrescine
annotated property: database_cross_reference
annotated target: RHEA:22287

acetyl-CoA + putrescine = CoA + N-acetylputrescine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00363
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02714
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00134
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02714
database_cross_reference: KEGG:R01154
database_cross_reference: METACYC:RXN-0
database_cross_reference: RHEA:25184
has_obo_namespace: reaction
id: UPa:UCR01154

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00363

Axiom
annotated source: acetyl-CoA + putrescine = CoA + N-acetylputrescine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: acetyl-CoA + putrescine = CoA + N-acetylputrescine
annotated property: database_cross_reference
annotated target: KEGG:R01154

MetaCyc REACTION
type: Axiom
annotated source: acetyl-CoA + putrescine = CoA + N-acetylputrescine
annotated property: database_cross_reference
annotated target: METACYC:RXN-0
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: acetyl-CoA + putrescine = CoA + N-acetylputrescine
annotated property: database_cross_reference
annotated target: RHEA:25184

2-oxoglutarate + putrescine = 4-aminobutanal + L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00290
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00555
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00134
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00555
database_cross_reference: KEGG:R01155
database_cross_reference: METACYC:PUTTRANSAM-RXN
database_cross_reference: RHEA:23819
has_obo_namespace: reaction
id: UPa:UCR01155

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00290

Axiom
annotated source: 2-oxoglutarate + putrescine = 4-aminobutanal + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + putrescine = 4-aminobutanal + L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R01155

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + putrescine = 4-aminobutanal + L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:PUTTRANSAM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + putrescine = 4-aminobutanal + L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:23819

H(2)O + agmatine = putrescine + urea
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00287
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00179
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00086
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00179
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00086
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00134
database_cross_reference: KEGG:R01157
database_cross_reference: METACYC:AGMATIN-RXN
database_cross_reference: RHEA:13932
has_obo_namespace: reaction
id: UPa:UCR01157

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00287

Axiom
annotated source: H(2)O + agmatine = putrescine + urea
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + agmatine = putrescine + urea
annotated property: database_cross_reference
annotated target: KEGG:R01157

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + agmatine = putrescine + urea
annotated property: database_cross_reference
annotated target: METACYC:AGMATIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + agmatine = putrescine + urea
annotated property: database_cross_reference
annotated target: RHEA:13932

H(2)O + L-histidinol + 2 NAD(+) = 2 H(+) + L-histidine + 2 NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00860
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00135
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00860
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00135
database_cross_reference: KEGG:R01158
database_cross_reference: METACYC:RXN-8001
database_cross_reference: RHEA:20644
has_obo_namespace: reaction
id: UPa:UCR01158

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00014

Axiom
annotated source: H(2)O + L-histidinol + 2 NAD(+) = 2 H(+) + L-histidine + 2 NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-histidinol + 2 NAD(+) = 2 H(+) + L-histidine + 2 NADH
annotated property: database_cross_reference
annotated target: KEGG:R01158

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-histidinol + 2 NAD(+) = 2 H(+) + L-histidine + 2 NADH
annotated property: database_cross_reference
annotated target: METACYC:RXN-8001
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-histidinol + 2 NAD(+) = 2 H(+) + L-histidine + 2 NADH
annotated property: database_cross_reference
annotated target: RHEA:20644

L-histidine = CO(2) + histamine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00786
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00135
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00388
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00135
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00388
database_cross_reference: KEGG:R01167
database_cross_reference: METACYC:HISTIDINE-DECARBOXYLASE-RXN
database_cross_reference: RHEA:20843
has_obo_namespace: reaction
id: UPa:UCR01167

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00786

Axiom
annotated source: L-histidine = CO(2) + histamine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-histidine = CO(2) + histamine
annotated property: database_cross_reference
annotated target: KEGG:R01167

MetaCyc REACTION
type: Axiom
annotated source: L-histidine = CO(2) + histamine
annotated property: database_cross_reference
annotated target: METACYC:HISTIDINE-DECARBOXYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-histidine = CO(2) + histamine
annotated property: database_cross_reference
annotated target: RHEA:20843

L-histidine = NH(3) + trans-urocanate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00549
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00135
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00785
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00135
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00785
database_cross_reference: KEGG:R01168
database_cross_reference: METACYC:HISTIDINE-AMMONIA-LYASE-RXN
database_cross_reference: RHEA:21235
has_obo_namespace: reaction
id: UPa:UCR01168

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00549

Axiom
annotated source: L-histidine = NH(3) + trans-urocanate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-histidine = NH(3) + trans-urocanate
annotated property: database_cross_reference
annotated target: KEGG:R01168

MetaCyc REACTION
type: Axiom
annotated source: L-histidine = NH(3) + trans-urocanate
annotated property: database_cross_reference
annotated target: METACYC:HISTIDINE-AMMONIA-LYASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-histidine = NH(3) + trans-urocanate
annotated property: database_cross_reference
annotated target: RHEA:21235

NAD(+) + myo-inositol = H(+) + NADH + scyllo-inosose
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00143
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00137
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00691
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00137
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00691
database_cross_reference: KEGG:R01183
database_cross_reference: METACYC:MYO-INOSITOL-2-DEHYDROGENASE-RXN
database_cross_reference: RHEA:16952
has_obo_namespace: reaction
id: UPa:UCR01183

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00143

Axiom
annotated source: NAD(+) + myo-inositol = H(+) + NADH + scyllo-inosose
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: NAD(+) + myo-inositol = H(+) + NADH + scyllo-inosose
annotated property: database_cross_reference
annotated target: KEGG:R01183

MetaCyc REACTION
type: Axiom
annotated source: NAD(+) + myo-inositol = H(+) + NADH + scyllo-inosose
annotated property: database_cross_reference
annotated target: METACYC:MYO-INOSITOL-2-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: NAD(+) + myo-inositol = H(+) + NADH + scyllo-inosose
annotated property: database_cross_reference
annotated target: RHEA:16952

O(2) + myo-inositol = D-glucuronate + H(2)O
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00527
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00137
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00191
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00137
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00191
database_cross_reference: KEGG:R01184
database_cross_reference: METACYC:MYO-INOSITOL-OXYGENASE-RXN
database_cross_reference: RHEA:23699
has_obo_namespace: reaction
id: UPa:UCR01184

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00527

Axiom
annotated source: O(2) + myo-inositol = D-glucuronate + H(2)O
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O(2) + myo-inositol = D-glucuronate + H(2)O
annotated property: database_cross_reference
annotated target: KEGG:R01184

MetaCyc REACTION
type: Axiom
annotated source: O(2) + myo-inositol = D-glucuronate + H(2)O
annotated property: database_cross_reference
annotated target: METACYC:MYO-INOSITOL-OXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: O(2) + myo-inositol = D-glucuronate + H(2)O
annotated property: database_cross_reference
annotated target: RHEA:23699

1D-myo-inositol 3-phosphate + H(2)O = myo-inositol + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00788
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04006
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00137
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04006
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00137
database_cross_reference: KEGG:R01187
database_cross_reference: METACYC:MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN
database_cross_reference: RHEA:30742
has_obo_namespace: reaction
id: UPa:UCR01187

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00788

Axiom
annotated source: 1D-myo-inositol 3-phosphate + H(2)O = myo-inositol + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 1D-myo-inositol 3-phosphate + H(2)O = myo-inositol + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01187

MetaCyc REACTION
type: Axiom
annotated source: 1D-myo-inositol 3-phosphate + H(2)O = myo-inositol + phosphate
annotated property: database_cross_reference
annotated target: METACYC:MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 1D-myo-inositol 3-phosphate + H(2)O = myo-inositol + phosphate
annotated property: database_cross_reference
annotated target: RHEA:30742

CO(2) + 2 H(+) + 2 reduced ferredoxin + succinyl-CoA = 2-oxoglutarate + CoA + 2 oxidized ferredoxin
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00998
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00091
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00138
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00139
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00091
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00138
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00139
database_cross_reference: KEGG:R01197
database_cross_reference: METACYC:2-OXOGLUTARATE-SYNTHASE-RXN
database_cross_reference: RHEA:17300
has_obo_namespace: reaction
id: UPa:UCR01197

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00998

Axiom
annotated source: CO(2) + 2 H(+) + 2 reduced ferredoxin + succinyl-CoA = 2-oxoglutarate + CoA + 2 oxidized ferredoxin
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: CO(2) + 2 H(+) + 2 reduced ferredoxin + succinyl-CoA = 2-oxoglutarate + CoA + 2 oxidized ferredoxin
annotated property: database_cross_reference
annotated target: KEGG:R01197

MetaCyc REACTION
type: Axiom
annotated source: CO(2) + 2 H(+) + 2 reduced ferredoxin + succinyl-CoA = 2-oxoglutarate + CoA + 2 oxidized ferredoxin
annotated property: database_cross_reference
annotated target: METACYC:2-OXOGLUTARATE-SYNTHASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: CO(2) + 2 H(+) + 2 reduced ferredoxin + succinyl-CoA = 2-oxoglutarate + CoA + 2 oxidized ferredoxin
annotated property: database_cross_reference
annotated target: RHEA:17300

(2S)-2-isopropylmalate + CoA = 3-methyl-2-oxobutanoate + H(2)O + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00070
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02504
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00141
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02504
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00141
database_cross_reference: KEGG:R01213
database_cross_reference: METACYC:2-ISOPROPYLMALATESYN-RXN
database_cross_reference: RHEA:21527
has_obo_namespace: reaction
id: UPa:UCR01213

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00070

Axiom
annotated source: (2S)-2-isopropylmalate + CoA = 3-methyl-2-oxobutanoate + H(2)O + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: (2S)-2-isopropylmalate + CoA = 3-methyl-2-oxobutanoate + H(2)O + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R01213

MetaCyc REACTION
type: Axiom
annotated source: (2S)-2-isopropylmalate + CoA = 3-methyl-2-oxobutanoate + H(2)O + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:2-ISOPROPYLMALATESYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (2S)-2-isopropylmalate + CoA = 3-methyl-2-oxobutanoate + H(2)O + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:21527

2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00062
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00183
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00141
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00183
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00141
database_cross_reference: KEGG:R01214
database_cross_reference: METACYC:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
database_cross_reference: RHEA:24816
has_obo_namespace: reaction
id: UPa:UCR01214

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00062

Axiom
annotated source: 2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate
annotated property: database_cross_reference
annotated target: KEGG:R01214

MetaCyc REACTION
type: Axiom
annotated source: 2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate
annotated property: database_cross_reference
annotated target: METACYC:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate
annotated property: database_cross_reference
annotated target: RHEA:24816

3-methyl-2-oxobutanoate + 5,10-methylene-THF + H(2)O = 2-dehydropantoate + 5,6,7,8-tetrahydrofolate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00141
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00143
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00101
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00966
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00141
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00143
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00101
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00966
database_cross_reference: KEGG:R01226
database_cross_reference: METACYC:3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN
database_cross_reference: RHEA:11827
has_obo_namespace: reaction
id: UPa:UCR01226

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00003

Axiom
annotated source: 3-methyl-2-oxobutanoate + 5,10-methylene-THF + H(2)O = 2-dehydropantoate + 5,6,7,8-tetrahydrofolate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3-methyl-2-oxobutanoate + 5,10-methylene-THF + H(2)O = 2-dehydropantoate + 5,6,7,8-tetrahydrofolate
annotated property: database_cross_reference
annotated target: KEGG:R01226

MetaCyc REACTION
type: Axiom
annotated source: 3-methyl-2-oxobutanoate + 5,10-methylene-THF + H(2)O = 2-dehydropantoate + 5,6,7,8-tetrahydrofolate
annotated property: database_cross_reference
annotated target: METACYC:3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 3-methyl-2-oxobutanoate + 5,10-methylene-THF + H(2)O = 2-dehydropantoate + 5,6,7,8-tetrahydrofolate
annotated property: database_cross_reference
annotated target: RHEA:11827

GMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + guanine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00887
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00144
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00242
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00144
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00242
database_cross_reference: KEGG:R01229
database_cross_reference: METACYC:GUANPRIBOSYLTRAN-RXN
database_cross_reference: RHEA:25427
has_obo_namespace: reaction
id: UPa:UCR01229

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00887

Axiom
annotated source: GMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + guanine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: GMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + guanine
annotated property: database_cross_reference
annotated target: KEGG:R01229

MetaCyc REACTION
type: Axiom
annotated source: GMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + guanine
annotated property: database_cross_reference
annotated target: METACYC:GUANPRIBOSYLTRAN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: GMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + guanine
annotated property: database_cross_reference
annotated target: RHEA:25427

ATP + NH(3) + XMP = AMP + GMP + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00297
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00655
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00144
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00655
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00144
database_cross_reference: KEGG:R01230
database_cross_reference: METACYC:GMP-SYN-NH3-RXN
database_cross_reference: RHEA:18304
has_obo_namespace: reaction
id: UPa:UCR01230

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00297

Axiom
annotated source: ATP + NH(3) + XMP = AMP + GMP + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + NH(3) + XMP = AMP + GMP + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R01230

MetaCyc REACTION
type: Axiom
annotated source: ATP + NH(3) + XMP = AMP + GMP + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:GMP-SYN-NH3-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + NH(3) + XMP = AMP + GMP + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:18304

ATP + H(2)O + L-glutamine + XMP = AMP + GMP + L-glutamate + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00296
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00064
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00655
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00025
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00144
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00064
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00655
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00025
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00144
database_cross_reference: KEGG:R01231
database_cross_reference: METACYC:GMP-SYN-GLUT-RXN
database_cross_reference: RHEA:11683
has_obo_namespace: reaction
id: UPa:UCR01231

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00296

Axiom
annotated source: ATP + H(2)O + L-glutamine + XMP = AMP + GMP + L-glutamate + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + XMP = AMP + GMP + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R01231

MetaCyc REACTION
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + XMP = AMP + GMP + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:GMP-SYN-GLUT-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + H(2)O + L-glutamine + XMP = AMP + GMP + L-glutamate + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:11683

3',5'-cyclic GMP + H(2)O = GMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00748
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00942
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00144
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00942
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00144
database_cross_reference: KEGG:R01234
database_cross_reference: METACYC:35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN
database_cross_reference: RHEA:16960
has_obo_namespace: reaction
id: UPa:UCR01234

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00748

Axiom
annotated source: 3',5'-cyclic GMP + H(2)O = GMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3',5'-cyclic GMP + H(2)O = GMP
annotated property: database_cross_reference
annotated target: KEGG:R01234

MetaCyc REACTION
type: Axiom
annotated source: 3',5'-cyclic GMP + H(2)O = GMP
annotated property: database_cross_reference
annotated target: METACYC:35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3',5'-cyclic GMP + H(2)O = GMP
annotated property: database_cross_reference
annotated target: RHEA:16960

L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylic acid + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00361
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00148
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03912
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00148
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03912
database_cross_reference: KEGG:R01248
database_cross_reference: RHEA:14108
has_obo_namespace: reaction
id: UPa:UCR01248

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00361

Axiom
annotated source: L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylic acid + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 2

KEGG reaction
type: Axiom
annotated source: L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylic acid + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01248

Rhea reaction
type: Axiom
annotated source: L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylic acid + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:14108

L-proline + Quinone = (S)-1-pyrroline-5-carboxylic acid + Hydroquinone
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00373
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00148
subclass of: Restriction
  on property: has input
  some values from: UPa UPC15602
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03912
subclass of: Restriction
  on property: has output
  some values from: UPa UPC15603
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00148
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC15602
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03912
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC15603
database_cross_reference: KEGG:R01253
database_cross_reference: METACYC:RXN-14903
database_cross_reference: RHEA:23787
has_obo_namespace: reaction
id: UPa:UCR01253

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00373

Axiom
annotated source: L-proline + Quinone = (S)-1-pyrroline-5-carboxylic acid + Hydroquinone
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-proline + Quinone = (S)-1-pyrroline-5-carboxylic acid + Hydroquinone
annotated property: database_cross_reference
annotated target: KEGG:R01253

MetaCyc REACTION
type: Axiom
annotated source: L-proline + Quinone = (S)-1-pyrroline-5-carboxylic acid + Hydroquinone
annotated property: database_cross_reference
annotated target: METACYC:RXN-14903
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-proline + Quinone = (S)-1-pyrroline-5-carboxylic acid + Hydroquinone
annotated property: database_cross_reference
annotated target: RHEA:23787

H(2)O + nicotinamide = NH(3) + nicotinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00790
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00153
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00253
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00153
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00253
database_cross_reference: KEGG:R01268
database_cross_reference: METACYC:NICOTINAMID-RXN
database_cross_reference: RHEA:14548
has_obo_namespace: reaction
id: UPa:UCR01268

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00790

Axiom
annotated source: H(2)O + nicotinamide = NH(3) + nicotinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + nicotinamide = NH(3) + nicotinate
annotated property: database_cross_reference
annotated target: KEGG:R01268

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + nicotinamide = NH(3) + nicotinate
annotated property: database_cross_reference
annotated target: METACYC:NICOTINAMID-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + nicotinamide = NH(3) + nicotinate
annotated property: database_cross_reference
annotated target: RHEA:14548

diphosphate + nicotinamide D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + nicotinamide
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00890
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00455
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00119
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00153
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00455
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00119
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00153
database_cross_reference: KEGG:R01271
database_cross_reference: METACYC:2.4.2.12-RXN
database_cross_reference: RHEA:16152
has_obo_namespace: reaction
id: UPa:UCR01271

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00890

Axiom
annotated source: diphosphate + nicotinamide D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + nicotinamide
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: diphosphate + nicotinamide D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + nicotinamide
annotated property: database_cross_reference
annotated target: KEGG:R01271

MetaCyc REACTION
type: Axiom
annotated source: diphosphate + nicotinamide D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + nicotinamide
annotated property: database_cross_reference
annotated target: METACYC:2.4.2.12-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: diphosphate + nicotinamide D-ribonucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + nicotinamide
annotated property: database_cross_reference
annotated target: RHEA:16152

H(2)O + L-cystathionine = L-homocysteine + NH(3) + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00078
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02291
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02291
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00155
database_cross_reference: KEGG:R01286
database_cross_reference: METACYC:CYSTATHIONINE-BETA-LYASE-RXN
database_cross_reference: RHEA:13968
has_obo_namespace: reaction
id: UPa:UCR01286

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00078

Axiom
annotated source: H(2)O + L-cystathionine = L-homocysteine + NH(3) + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + L-cystathionine = L-homocysteine + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R01286

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + L-cystathionine = L-homocysteine + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:CYSTATHIONINE-BETA-LYASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + L-cystathionine = L-homocysteine + NH(3) + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:13968

O-acetyl-L-homoserine + hydrogen sulfide = L-homocysteine + acetate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00079
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01077
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00033
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01077
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00033
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00155
database_cross_reference: KEGG:R01287
database_cross_reference: METACYC:ACETYLHOMOSER-CYS-RXN
database_cross_reference: RHEA:27825
has_obo_namespace: reaction
id: UPa:UCR01287

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00079

Axiom
annotated source: O-acetyl-L-homoserine + hydrogen sulfide = L-homocysteine + acetate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O-acetyl-L-homoserine + hydrogen sulfide = L-homocysteine + acetate
annotated property: database_cross_reference
annotated target: KEGG:R01287

MetaCyc REACTION
type: Axiom
annotated source: O-acetyl-L-homoserine + hydrogen sulfide = L-homocysteine + acetate
annotated property: database_cross_reference
annotated target: METACYC:ACETYLHOMOSER-CYS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: O-acetyl-L-homoserine + hydrogen sulfide = L-homocysteine + acetate
annotated property: database_cross_reference
annotated target: RHEA:27825

O-succinyl-L-homoserine + hydrogen sulfide = L-homocysteine + succinate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00449
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00283
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01118
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00042
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00283
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01118
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00042
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00155
database_cross_reference: KEGG:R01288
database_cross_reference: METACYC:RXN-9384
database_cross_reference: RHEA:27829
has_obo_namespace: reaction
id: UPa:UCR01288

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00449

Axiom
annotated source: O-succinyl-L-homoserine + hydrogen sulfide = L-homocysteine + succinate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: O-succinyl-L-homoserine + hydrogen sulfide = L-homocysteine + succinate
annotated property: database_cross_reference
annotated target: KEGG:R01288

MetaCyc REACTION
type: Axiom
annotated source: O-succinyl-L-homoserine + hydrogen sulfide = L-homocysteine + succinate
annotated property: database_cross_reference
annotated target: METACYC:RXN-9384
source: Rhea

Rhea reaction
type: Axiom
annotated source: O-succinyl-L-homoserine + hydrogen sulfide = L-homocysteine + succinate
annotated property: database_cross_reference
annotated target: RHEA:27829

L-homocysteine + L-serine = H(2)O + L-cystathionine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00201
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00065
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00155
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02291
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00065
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00155
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02291
database_cross_reference: KEGG:R01290
database_cross_reference: METACYC:CYSTATHIONINE-BETA-SYNTHASE-RXN
database_cross_reference: RHEA:10115
has_obo_namespace: reaction
id: UPa:UCR01290

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00201

Axiom
annotated source: L-homocysteine + L-serine = H(2)O + L-cystathionine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-homocysteine + L-serine = H(2)O + L-cystathionine
annotated property: database_cross_reference
annotated target: KEGG:R01290

MetaCyc REACTION
type: Axiom
annotated source: L-homocysteine + L-serine = H(2)O + L-cystathionine
annotated property: database_cross_reference
annotated target: METACYC:CYSTATHIONINE-BETA-SYNTHASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-homocysteine + L-serine = H(2)O + L-cystathionine
annotated property: database_cross_reference
annotated target: RHEA:10115

H(+) + NADPH + O(2) + benzoate = 4-hydroxybenzoate + H(2)O + NADP(+)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00256
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00180
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00156
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00180
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00156
database_cross_reference: KEGG:R01295
database_cross_reference: METACYC:BENZOATE-4-MONOOXYGENASE-RXN
database_cross_reference: RHEA:18036
has_obo_namespace: reaction
id: UPa:UCR01295

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00256

Axiom
annotated source: H(+) + NADPH + O(2) + benzoate = 4-hydroxybenzoate + H(2)O + NADP(+)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(+) + NADPH + O(2) + benzoate = 4-hydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: KEGG:R01295

MetaCyc REACTION
type: Axiom
annotated source: H(+) + NADPH + O(2) + benzoate = 4-hydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: METACYC:BENZOATE-4-MONOOXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(+) + NADPH + O(2) + benzoate = 4-hydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: RHEA:18036

4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00257
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00156
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00156
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00230
database_cross_reference: KEGG:R01298
database_cross_reference: METACYC:1.14.13.33-RXN
database_cross_reference: METACYC:4-HYDROXYBENZOATE-3-MONOOXYGENASE-RXN
database_cross_reference: RHEA:19480
has_obo_namespace: reaction
id: UPa:UCR01298

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00257

Axiom
annotated source: 4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: KEGG:R01298

MetaCyc REACTION
type: Axiom
annotated source: 4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: METACYC:1.14.13.33-RXN
source: MetaCyc
source: Rhea

MetaCyc REACTION
type: Axiom
annotated source: 4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: METACYC:4-HYDROXYBENZOATE-3-MONOOXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 4-hydroxybenzoate + H(+) + NADPH + O(2) = 3,4-dihydroxybenzoate + H(2)O + NADP(+)
annotated property: database_cross_reference
annotated target: RHEA:19480

4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01022
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02949
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00156
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02949
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00156
database_cross_reference: KEGG:R01301
database_cross_reference: METACYC:3.1.2.23-RXN
database_cross_reference: RHEA:11951
has_obo_namespace: reaction
id: UPa:UCR01301

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01022

Axiom
annotated source: 4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA
annotated property: database_cross_reference
annotated target: KEGG:R01301

MetaCyc REACTION
type: Axiom
annotated source: 4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA
annotated property: database_cross_reference
annotated target: METACYC:3.1.2.23-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 4-hydroxybenzoyl-CoA + H(2)O = 4-hydroxybenzoate + CoA
annotated property: database_cross_reference
annotated target: RHEA:11951

1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00740
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00307
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00641
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00055
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00157
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00307
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00641
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00055
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00157
database_cross_reference: KEGG:R01321
database_cross_reference: METACYC:RXN-5781
database_cross_reference: RHEA:10311
database_cross_reference: RHEA:32942
has_obo_namespace: reaction
id: UPa:UCR01321

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00740

Axiom
annotated source: 1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
annotated property: database_cross_reference
annotated target: KEGG:R01321

MetaCyc REACTION
type: Axiom
annotated source: 1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
annotated property: database_cross_reference
annotated target: METACYC:RXN-5781
source: Rhea

Rhea reaction
type: Axiom
annotated source: 1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
annotated property: database_cross_reference
annotated target: RHEA:10311

Rhea reaction
type: Axiom
annotated source: 1,2-diacyl-sn-glycerol + CDP-choline = CMP + phosphatidylcholine
annotated property: database_cross_reference
annotated target: RHEA:32942

citrate = H(2)O + cis-aconitate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00718
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00158
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00417
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00158
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00417
database_cross_reference: KEGG:R01325
database_cross_reference: METACYC:ACONITATEDEHYDR-RXN
database_cross_reference: RHEA:10231
has_obo_namespace: reaction
id: UPa:UCR01325

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00718

Axiom
annotated source: citrate = H(2)O + cis-aconitate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: citrate = H(2)O + cis-aconitate
annotated property: database_cross_reference
annotated target: KEGG:R01325

MetaCyc REACTION
type: Axiom
annotated source: citrate = H(2)O + cis-aconitate
annotated property: database_cross_reference
annotated target: METACYC:ACONITATEDEHYDR-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: citrate = H(2)O + cis-aconitate
annotated property: database_cross_reference
annotated target: RHEA:10231

2-phosphoglycolate + H(2)O = glycolate + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00834
subclass of: Restriction
  on property: part of
  some values from: UPa UER00911
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00988
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00160
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00988
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00160
database_cross_reference: KEGG:R01334
database_cross_reference: METACYC:GPH-RXN
database_cross_reference: RHEA:14372
has_obo_namespace: reaction
id: UPa:UCR01334

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00834

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00911

Axiom
annotated source: 2-phosphoglycolate + H(2)O = glycolate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: 2-phosphoglycolate + H(2)O = glycolate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-phosphoglycolate + H(2)O = glycolate + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01334

MetaCyc REACTION
type: Axiom
annotated source: 2-phosphoglycolate + H(2)O = glycolate + phosphate
annotated property: database_cross_reference
annotated target: METACYC:GPH-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2-phosphoglycolate + H(2)O = glycolate + phosphate
annotated property: database_cross_reference
annotated target: RHEA:14372

ATP + propanoate = ADP + propanoyl phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00510
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00163
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02876
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00163
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02876
database_cross_reference: KEGG:R01353
database_cross_reference: METACYC:PROPKIN-RXN
database_cross_reference: RHEA:23151
has_obo_namespace: reaction
id: UPa:UCR01353

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00510

Axiom
annotated source: ATP + propanoate = ADP + propanoyl phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + propanoate = ADP + propanoyl phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01353

MetaCyc REACTION
type: Axiom
annotated source: ATP + propanoate = ADP + propanoyl phosphate
annotated property: database_cross_reference
annotated target: METACYC:PROPKIN-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + propanoate = ADP + propanoyl phosphate
annotated property: database_cross_reference
annotated target: RHEA:23151

(2R,3S)-2,3-dimethylmalate = propanoate + pyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER01019
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03652
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00022
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00163
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03652
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00022
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00163
database_cross_reference: KEGG:R01355
database_cross_reference: METACYC:23-DIMETHYLMALATE-LYASE-RXN
database_cross_reference: RHEA:10475
has_obo_namespace: reaction
id: UPa:UCR01355

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER01019

Axiom
annotated source: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate
annotated property: database_cross_reference
annotated target: KEGG:R01355

MetaCyc REACTION
type: Axiom
annotated source: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate
annotated property: database_cross_reference
annotated target: METACYC:23-DIMETHYLMALATE-LYASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (2R,3S)-2,3-dimethylmalate = propanoate + pyruvate
annotated property: database_cross_reference
annotated target: RHEA:10475

(S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00863
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00356
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00024
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00164
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00356
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00024
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00164
database_cross_reference: KEGG:R01360
database_cross_reference: METACYC:HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN
database_cross_reference: RHEA:24407
has_obo_namespace: reaction
id: UPa:UCR01360

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00863

Axiom
annotated source: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA
annotated property: database_cross_reference
annotated target: KEGG:R01360

MetaCyc REACTION
type: Axiom
annotated source: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA
annotated property: database_cross_reference
annotated target: METACYC:HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA
annotated property: database_cross_reference
annotated target: RHEA:24407

acetoacetate + fumarate = 4-fumarylacetoacetate + H(2)O
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00341
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00122
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00164
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01061
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00122
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00164
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01061
database_cross_reference: KEGG:R01364
database_cross_reference: METACYC:FUMARYLACETOACETASE-RXN
database_cross_reference: RHEA:10247
has_obo_namespace: reaction
id: UPa:UCR01364

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00341

Axiom
annotated source: acetoacetate + fumarate = 4-fumarylacetoacetate + H(2)O
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: acetoacetate + fumarate = 4-fumarylacetoacetate + H(2)O
annotated property: database_cross_reference
annotated target: KEGG:R01364

MetaCyc REACTION
type: Axiom
annotated source: acetoacetate + fumarate = 4-fumarylacetoacetate + H(2)O
annotated property: database_cross_reference
annotated target: METACYC:FUMARYLACETOACETASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: acetoacetate + fumarate = 4-fumarylacetoacetate + H(2)O
annotated property: database_cross_reference
annotated target: RHEA:10247

prephenate = CO(2) + H(2)O + phenylpyruvate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00345
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00254
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00166
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00254
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00166
database_cross_reference: KEGG:R01373
database_cross_reference: METACYC:PREPHENATEDEHYDRAT-RXN
database_cross_reference: RHEA:21651
has_obo_namespace: reaction
id: UPa:UCR01373

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00345

Axiom
annotated source: prephenate = CO(2) + H(2)O + phenylpyruvate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: prephenate = CO(2) + H(2)O + phenylpyruvate
annotated property: database_cross_reference
annotated target: KEGG:R01373

MetaCyc REACTION
type: Axiom
annotated source: prephenate = CO(2) + H(2)O + phenylpyruvate
annotated property: database_cross_reference
annotated target: METACYC:PREPHENATEDEHYDRAT-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: prephenate = CO(2) + H(2)O + phenylpyruvate
annotated property: database_cross_reference
annotated target: RHEA:21651

UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00771
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00167
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00190
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00167
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00190
database_cross_reference: KEGG:R01384
database_cross_reference: METACYC:UDP-GLUCURONATE-DECARBOXYLASE-RXN
database_cross_reference: RHEA:23919
has_obo_namespace: reaction
id: UPa:UCR01384

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00771

Axiom
annotated source: UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: KEGG:R01384

MetaCyc REACTION
type: Axiom
annotated source: UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: METACYC:UDP-GLUCURONATE-DECARBOXYLASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: UDP-alpha-D-glucuronate = CO(2) + UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: RHEA:23919

D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00916
subclass of: Restriction
  on property: part of
  some values from: UPa UER00983
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00258
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00168
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00258
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00168
database_cross_reference: KEGG:R01388
database_cross_reference: METACYC:GLYCERATE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:17908
has_obo_namespace: reaction
id: UPa:UCR01388

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00916

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00983

Axiom
annotated source: D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

Axiom
annotated source: D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01388

MetaCyc REACTION
type: Axiom
annotated source: D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:GLYCERATE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-glycerate + NAD(+) = 3-hydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:17908

D-glycerate + NADP(+) = 3-hydroxypyruvate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00984
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00258
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00168
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00258
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00168
database_cross_reference: KEGG:R01392
database_cross_reference: METACYC:RXN0-300
database_cross_reference: RHEA:18660
has_obo_namespace: reaction
id: UPa:UCR01392

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00984

Axiom
annotated source: D-glycerate + NADP(+) = 3-hydroxypyruvate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glycerate + NADP(+) = 3-hydroxypyruvate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R01392

MetaCyc REACTION
type: Axiom
annotated source: D-glycerate + NADP(+) = 3-hydroxypyruvate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN0-300
source: MetaCyc
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-glycerate + NADP(+) = 3-hydroxypyruvate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:18660

L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00116
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00049
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00169
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00438
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00049
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00169
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00438
database_cross_reference: KEGG:R01397
database_cross_reference: METACYC:ASPCARBTRANS-RXN
database_cross_reference: RHEA:20016
has_obo_namespace: reaction
id: UPa:UCR01397

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00116

Axiom
annotated source: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01397

MetaCyc REACTION
type: Axiom
annotated source: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + phosphate
annotated property: database_cross_reference
annotated target: METACYC:ASPCARBTRANS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + phosphate
annotated property: database_cross_reference
annotated target: RHEA:20016

L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00112
subclass of: Restriction
  on property: part of
  some values from: UPa UER00271
subclass of: Restriction
  on property: part of
  some values from: UPa UER00365
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00077
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00169
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00327
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00077
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00169
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00327
database_cross_reference: KEGG:R01398
database_cross_reference: METACYC:ORNCARBAMTRANSFER-RXN
database_cross_reference: RHEA:19516
has_obo_namespace: reaction
id: UPa:UCR01398

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00112

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00271

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00365

Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01398

MetaCyc REACTION
type: Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: database_cross_reference
annotated target: METACYC:ORNCARBAMTRANSFER-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-ornithine + carbamoyl phosphate = L-citrulline + phosphate
annotated property: database_cross_reference
annotated target: RHEA:19516

carbamoyl phosphate + putrescine = N-carbamoylputrescine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00941
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00134
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00169
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00436
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00134
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00169
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00436
database_cross_reference: KEGG:R01399
database_cross_reference: METACYC:PUTRESCINE-CARBAMOYLTRANSFERASE-RXN
database_cross_reference: RHEA:21939
has_obo_namespace: reaction
id: UPa:UCR01399

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00941

Axiom
annotated source: carbamoyl phosphate + putrescine = N-carbamoylputrescine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: carbamoyl phosphate + putrescine = N-carbamoylputrescine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01399

MetaCyc REACTION
type: Axiom
annotated source: carbamoyl phosphate + putrescine = N-carbamoylputrescine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:PUTRESCINE-CARBAMOYLTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: carbamoyl phosphate + putrescine = N-carbamoylputrescine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:21939

H(2)O + S-methyl-5'-thioadenosine = 5-methylthio-alpha-D-ribose + adenine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00871
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00170
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00147
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03089
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00170
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00147
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03089
database_cross_reference: KEGG:R01401
database_cross_reference: METACYC:METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN
database_cross_reference: RHEA:13620
has_obo_namespace: reaction
id: UPa:UCR01401

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00871

Axiom
annotated source: H(2)O + S-methyl-5'-thioadenosine = 5-methylthio-alpha-D-ribose + adenine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + S-methyl-5'-thioadenosine = 5-methylthio-alpha-D-ribose + adenine
annotated property: database_cross_reference
annotated target: KEGG:R01401

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + S-methyl-5'-thioadenosine = 5-methylthio-alpha-D-ribose + adenine
annotated property: database_cross_reference
annotated target: METACYC:METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + S-methyl-5'-thioadenosine = 5-methylthio-alpha-D-ribose + adenine
annotated property: database_cross_reference
annotated target: RHEA:13620

S-methyl-5'-thioadenosine + phosphate = S-methyl-5-thio-alpha-D-ribose 1-phosphate + adenine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00873
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00170
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00147
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04188
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00170
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00147
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04188
database_cross_reference: KEGG:R01402
database_cross_reference: METACYC:5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN
database_cross_reference: RHEA:11855
has_obo_namespace: reaction
id: UPa:UCR01402

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00873

Axiom
annotated source: S-methyl-5'-thioadenosine + phosphate = S-methyl-5-thio-alpha-D-ribose 1-phosphate + adenine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: S-methyl-5'-thioadenosine + phosphate = S-methyl-5-thio-alpha-D-ribose 1-phosphate + adenine
annotated property: database_cross_reference
annotated target: KEGG:R01402

MetaCyc REACTION
type: Axiom
annotated source: S-methyl-5'-thioadenosine + phosphate = S-methyl-5-thio-alpha-D-ribose 1-phosphate + adenine
annotated property: database_cross_reference
annotated target: METACYC:5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: S-methyl-5'-thioadenosine + phosphate = S-methyl-5-thio-alpha-D-ribose 1-phosphate + adenine
annotated property: database_cross_reference
annotated target: RHEA:11855

H(2)O + agmatine = N-carbamoylputrescine + NH(3)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00285
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00179
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00436
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00179
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00436
database_cross_reference: KEGG:R01416
database_cross_reference: METACYC:AGMATINE-DEIMINASE-RXN
database_cross_reference: RHEA:18040
has_obo_namespace: reaction
id: UPa:UCR01416

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00285

Axiom
annotated source: H(2)O + agmatine = N-carbamoylputrescine + NH(3)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + agmatine = N-carbamoylputrescine + NH(3)
annotated property: database_cross_reference
annotated target: KEGG:R01416

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + agmatine = N-carbamoylputrescine + NH(3)
annotated property: database_cross_reference
annotated target: METACYC:AGMATINE-DEIMINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + agmatine = N-carbamoylputrescine + NH(3)
annotated property: database_cross_reference
annotated target: RHEA:18040

H(2)O + NAD(+) + benzaldehyde = H(+) + NADH + benzoate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00988
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00261
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00180
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00261
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00180
database_cross_reference: KEGG:R01419
database_cross_reference: METACYC:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN
database_cross_reference: RHEA:11843
has_obo_namespace: reaction
id: UPa:UCR01419

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00988

Axiom
annotated source: H(2)O + NAD(+) + benzaldehyde = H(+) + NADH + benzoate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NAD(+) + benzaldehyde = H(+) + NADH + benzoate
annotated property: database_cross_reference
annotated target: KEGG:R01419

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NAD(+) + benzaldehyde = H(+) + NADH + benzoate
annotated property: database_cross_reference
annotated target: METACYC:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: H(2)O + NAD(+) + benzaldehyde = H(+) + NADH + benzoate
annotated property: database_cross_reference
annotated target: RHEA:11843

H(2)O + NADP(+) + benzaldehyde = H(+) + NADPH + benzoate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00987
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00261
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00180
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00261
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00180
database_cross_reference: KEGG:R01420
database_cross_reference: METACYC:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN
database_cross_reference: RHEA:21663
has_obo_namespace: reaction
id: UPa:UCR01420

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00987

Axiom
annotated source: H(2)O + NADP(+) + benzaldehyde = H(+) + NADPH + benzoate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + NADP(+) + benzaldehyde = H(+) + NADPH + benzoate
annotated property: database_cross_reference
annotated target: KEGG:R01420

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + NADP(+) + benzaldehyde = H(+) + NADPH + benzoate
annotated property: database_cross_reference
annotated target: METACYC:BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + NADP(+) + benzaldehyde = H(+) + NADPH + benzoate
annotated property: database_cross_reference
annotated target: RHEA:21663

L-threonine + NAD(+) = H(+) + L-2-amino-3-oxobutanoic acid + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00505
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00188
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03508
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00188
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03508
database_cross_reference: KEGG:R01465
database_cross_reference: METACYC:THREODEHYD-RXN
database_cross_reference: RHEA:13164
has_obo_namespace: reaction
id: UPa:UCR01465

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00505

Axiom
annotated source: L-threonine + NAD(+) = H(+) + L-2-amino-3-oxobutanoic acid + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-threonine + NAD(+) = H(+) + L-2-amino-3-oxobutanoic acid + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01465

MetaCyc REACTION
type: Axiom
annotated source: L-threonine + NAD(+) = H(+) + L-2-amino-3-oxobutanoic acid + NADH
annotated property: database_cross_reference
annotated target: METACYC:THREODEHYD-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-threonine + NAD(+) = H(+) + L-2-amino-3-oxobutanoic acid + NADH
annotated property: database_cross_reference
annotated target: RHEA:13164

H(2)O + O-phospho-L-homoserine = L-threonine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00065
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01102
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00188
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01102
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00188
database_cross_reference: KEGG:R01466
database_cross_reference: METACYC:THRESYN-RXN
database_cross_reference: RHEA:10843
has_obo_namespace: reaction
id: UPa:UCR01466

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00065

Axiom
annotated source: H(2)O + O-phospho-L-homoserine = L-threonine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + O-phospho-L-homoserine = L-threonine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01466

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + O-phospho-L-homoserine = L-threonine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:THRESYN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + O-phospho-L-homoserine = L-threonine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:10843

ATP + ethanolamine = ADP + phosphoethanolamine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00741
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00189
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00346
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00189
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00346
database_cross_reference: KEGG:R01468
database_cross_reference: METACYC:ETHANOLAMINE-KINASE-RXN
database_cross_reference: RHEA:13072
has_obo_namespace: reaction
id: UPa:UCR01468

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00741

Axiom
annotated source: ATP + ethanolamine = ADP + phosphoethanolamine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + ethanolamine = ADP + phosphoethanolamine
annotated property: database_cross_reference
annotated target: KEGG:R01468

MetaCyc REACTION
type: Axiom
annotated source: ATP + ethanolamine = ADP + phosphoethanolamine
annotated property: database_cross_reference
annotated target: METACYC:ETHANOLAMINE-KINASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + ethanolamine = ADP + phosphoethanolamine
annotated property: database_cross_reference
annotated target: RHEA:13072

UDP-L-arabinose = UDP-alpha-D-xylose
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00772
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00935
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00190
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00935
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00190
database_cross_reference: KEGG:R01473
database_cross_reference: METACYC:UDP-ARABINOSE-4-EPIMERASE-RXN
database_cross_reference: RHEA:11323
has_obo_namespace: reaction
id: UPa:UCR01473

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00772

Axiom
annotated source: UDP-L-arabinose = UDP-alpha-D-xylose
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: UDP-L-arabinose = UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: KEGG:R01473

MetaCyc REACTION
type: Axiom
annotated source: UDP-L-arabinose = UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: METACYC:UDP-ARABINOSE-4-EPIMERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: UDP-L-arabinose = UDP-alpha-D-xylose
annotated property: database_cross_reference
annotated target: RHEA:11323

L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00937
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00800
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00191
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00800
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00191
database_cross_reference: KEGG:R01481
database_cross_reference: METACYC:GLUCURONATE-REDUCTASE-RXN
database_cross_reference: RHEA:14912
has_obo_namespace: reaction
id: UPa:UCR01481

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00937

Axiom
annotated source: L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R01481

MetaCyc REACTION
type: Axiom
annotated source: L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:GLUCURONATE-REDUCTASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: L-gulonate + NADP(+) = D-glucuronate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:14912

3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00185
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00197
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00236
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00197
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00236
database_cross_reference: KEGG:R01512
database_cross_reference: METACYC:PHOSGLYPHOS-RXN
database_cross_reference: RHEA:14804
has_obo_namespace: reaction
id: UPa:UCR01512

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00185

Axiom
annotated source: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP
annotated property: database_cross_reference
annotated target: KEGG:R01512

MetaCyc REACTION
type: Axiom
annotated source: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP
annotated property: database_cross_reference
annotated target: METACYC:PHOSGLYPHOS-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP
annotated property: database_cross_reference
annotated target: RHEA:14804

3-phospho-D-glycerate + NAD(+) = 3-phosphohydroxypyruvate + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00196
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00197
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03232
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00197
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03232
database_cross_reference: KEGG:R01513
database_cross_reference: METACYC:PGLYCDEHYDROG-RXN
database_cross_reference: RHEA:12644
has_obo_namespace: reaction
id: UPa:UCR01513

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00196

Axiom
annotated source: 3-phospho-D-glycerate + NAD(+) = 3-phosphohydroxypyruvate + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3-phospho-D-glycerate + NAD(+) = 3-phosphohydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01513

MetaCyc REACTION
type: Axiom
annotated source: 3-phospho-D-glycerate + NAD(+) = 3-phosphohydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:PGLYCDEHYDROG-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 3-phospho-D-glycerate + NAD(+) = 3-phosphohydroxypyruvate + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:12644

ATP + D-glycerate = 3-phospho-D-glycerate + ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00833
subclass of: Restriction
  on property: part of
  some values from: UPa UER00917
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00258
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00197
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00258
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00197
database_cross_reference: KEGG:R01514
database_cross_reference: METACYC:GLY3KIN-RXN
database_cross_reference: RHEA:23519
has_obo_namespace: reaction
id: UPa:UCR01514

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00833

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00917

Axiom
annotated source: ATP + D-glycerate = 3-phospho-D-glycerate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

Axiom
annotated source: ATP + D-glycerate = 3-phospho-D-glycerate + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + D-glycerate = 3-phospho-D-glycerate + ADP
annotated property: database_cross_reference
annotated target: KEGG:R01514

MetaCyc REACTION
type: Axiom
annotated source: ATP + D-glycerate = 3-phospho-D-glycerate + ADP
annotated property: database_cross_reference
annotated target: METACYC:GLY3KIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + D-glycerate = 3-phospho-D-glycerate + ADP
annotated property: database_cross_reference
annotated target: RHEA:23519

2-phospho-D-glycerate = 3-phospho-D-glycerate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00186
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00631
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00197
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00631
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00197
database_cross_reference: KEGG:R01518
database_cross_reference: METACYC:3PGAREARR-RXN
database_cross_reference: RHEA:15904
has_obo_namespace: reaction
id: UPa:UCR01518

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00186

Axiom
annotated source: 2-phospho-D-glycerate = 3-phospho-D-glycerate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-phospho-D-glycerate = 3-phospho-D-glycerate
annotated property: database_cross_reference
annotated target: KEGG:R01518

MetaCyc REACTION
type: Axiom
annotated source: 2-phospho-D-glycerate = 3-phospho-D-glycerate
annotated property: database_cross_reference
annotated target: METACYC:3PGAREARR-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-phospho-D-glycerate = 3-phospho-D-glycerate
annotated property: database_cross_reference
annotated target: RHEA:15904

D-glucono-1,5-lactone + H(2)O = D-gluconate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00785
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00198
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00257
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00198
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00257
database_cross_reference: KEGG:R01519
database_cross_reference: METACYC:GLUCONOLACT-RXN
database_cross_reference: RHEA:10443
has_obo_namespace: reaction
id: UPa:UCR01519

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00785

Axiom
annotated source: D-glucono-1,5-lactone + H(2)O = D-gluconate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-glucono-1,5-lactone + H(2)O = D-gluconate
annotated property: database_cross_reference
annotated target: KEGG:R01519

MetaCyc REACTION
type: Axiom
annotated source: D-glucono-1,5-lactone + H(2)O = D-gluconate
annotated property: database_cross_reference
annotated target: METACYC:GLUCONOLACT-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-glucono-1,5-lactone + H(2)O = D-gluconate
annotated property: database_cross_reference
annotated target: RHEA:10443

6-phospho-D-gluconate + NADP(+) = CO(2) + D-ribulose 5-phosphate + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00410
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00345
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00199
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00345
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00199
database_cross_reference: KEGG:R01528
database_cross_reference: METACYC:RXN-9952
database_cross_reference: RHEA:10119
has_obo_namespace: reaction
id: UPa:UCR01528

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00410

Axiom
annotated source: 6-phospho-D-gluconate + NADP(+) = CO(2) + D-ribulose 5-phosphate + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 6-phospho-D-gluconate + NADP(+) = CO(2) + D-ribulose 5-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R01528

MetaCyc REACTION
type: Axiom
annotated source: 6-phospho-D-gluconate + NADP(+) = CO(2) + D-ribulose 5-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN-9952
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 6-phospho-D-gluconate + NADP(+) = CO(2) + D-ribulose 5-phosphate + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:10119

D-ribulose 5-phosphate = D-xylulose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00411
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00199
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00231
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00199
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00231
database_cross_reference: KEGG:R01529
database_cross_reference: METACYC:RIBULP3EPIM-RXN
database_cross_reference: RHEA:13680
has_obo_namespace: reaction
id: UPa:UCR01529

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00411

Axiom
annotated source: D-ribulose 5-phosphate = D-xylulose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-ribulose 5-phosphate = D-xylulose 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01529

MetaCyc REACTION
type: Axiom
annotated source: D-ribulose 5-phosphate = D-xylulose 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:RIBULP3EPIM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-ribulose 5-phosphate = D-xylulose 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:13680

D-arabinose 5-phosphate = D-ribulose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00473
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01112
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00199
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01112
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00199
database_cross_reference: KEGG:R01530
database_cross_reference: METACYC:DARAB5PISOM-RXN
database_cross_reference: RHEA:23107
has_obo_namespace: reaction
id: UPa:UCR01530

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00473

Axiom
annotated source: D-arabinose 5-phosphate = D-ribulose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: D-arabinose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01530

MetaCyc REACTION
type: Axiom
annotated source: D-arabinose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: METACYC:DARAB5PISOM-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: D-arabinose 5-phosphate = D-ribulose 5-phosphate
annotated property: database_cross_reference
annotated target: RHEA:23107

2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconic acid + ADP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00828
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00204
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04442
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00204
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04442
database_cross_reference: KEGG:R01541
database_cross_reference: METACYC:DEOXYGLUCONOKIN-RXN
database_cross_reference: RHEA:14800
has_obo_namespace: reaction
id: UPa:UCR01541

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00828

Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconic acid + ADP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconic acid + ADP
annotated property: database_cross_reference
annotated target: KEGG:R01541

MetaCyc REACTION
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconic acid + ADP
annotated property: database_cross_reference
annotated target: METACYC:DEOXYGLUCONOKIN-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + ATP = 2-dehydro-3-deoxy-6-phospho-D-gluconic acid + ADP
annotated property: database_cross_reference
annotated target: RHEA:14800

2-dehydro-3-deoxy-D-gluconate + NAD(+) = 3-deoxy-D-glycero-hexo-2,5-diulosonate + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00827
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00204
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04349
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00204
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04349
database_cross_reference: KEGG:R01542
database_cross_reference: METACYC:1.1.1.127-RXN
database_cross_reference: RHEA:24235
has_obo_namespace: reaction
id: UPa:UCR01542

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00827

Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + NAD(+) = 3-deoxy-D-glycero-hexo-2,5-diulosonate + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + NAD(+) = 3-deoxy-D-glycero-hexo-2,5-diulosonate + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01542

MetaCyc REACTION
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + NAD(+) = 3-deoxy-D-glycero-hexo-2,5-diulosonate + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:1.1.1.127-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 2-dehydro-3-deoxy-D-gluconate + NAD(+) = 3-deoxy-D-glycero-hexo-2,5-diulosonate + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:24235

H(2)O + N-carbamoylsarcosine = CO(2) + NH(3) + sarcosine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00397
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01043
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00014
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00213
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01043
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00014
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00213
database_cross_reference: KEGG:R01563
database_cross_reference: METACYC:N-CARBAMOYLSARCOSINE-AMIDASE-RXN
database_cross_reference: RHEA:20060
has_obo_namespace: reaction
id: UPa:UCR01563

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00397

Axiom
annotated source: H(2)O + N-carbamoylsarcosine = CO(2) + NH(3) + sarcosine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N-carbamoylsarcosine = CO(2) + NH(3) + sarcosine
annotated property: database_cross_reference
annotated target: KEGG:R01563

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N-carbamoylsarcosine = CO(2) + NH(3) + sarcosine
annotated property: database_cross_reference
annotated target: METACYC:N-CARBAMOYLSARCOSINE-AMIDASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + N-carbamoylsarcosine = CO(2) + NH(3) + sarcosine
annotated property: database_cross_reference
annotated target: RHEA:20060

H(2)O + N,N-dimethylglycine + electron-transferring flavoprotein = formaldehyde + reduced electron-transferring flavoprotein + sarcosine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00433
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has input
  some values from: UPa UPC01026
subclass of: Restriction
  on property: has input
  some values from: UPa UPC04253
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00067
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00213
subclass of: Restriction
  on property: has output
  some values from: UPa UPC04570
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC01026
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC04253
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00067
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00213
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC04570
database_cross_reference: KEGG:R01565
database_cross_reference: METACYC:DIMETHYLGLYCINE-DEHYDROGENASE-RXN
database_cross_reference: RHEA:22499
has_obo_namespace: reaction
id: UPa:UCR01565

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00433

Axiom
annotated source: H(2)O + N,N-dimethylglycine + electron-transferring flavoprotein = formaldehyde + reduced electron-transferring flavoprotein + sarcosine
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: H(2)O + N,N-dimethylglycine + electron-transferring flavoprotein = formaldehyde + reduced electron-transferring flavoprotein + sarcosine
annotated property: database_cross_reference
annotated target: KEGG:R01565

MetaCyc REACTION
type: Axiom
annotated source: H(2)O + N,N-dimethylglycine + electron-transferring flavoprotein = formaldehyde + reduced electron-transferring flavoprotein + sarcosine
annotated property: database_cross_reference
annotated target: METACYC:DIMETHYLGLYCINE-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: H(2)O + N,N-dimethylglycine + electron-transferring flavoprotein = formaldehyde + reduced electron-transferring flavoprotein + sarcosine
annotated property: database_cross_reference
annotated target: RHEA:22499

ATP + thymidine = ADP + dTMP
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00639
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00214
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00364
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00214
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00364
database_cross_reference: KEGG:R01567
database_cross_reference: METACYC:THYKI-RXN
database_cross_reference: RHEA:19132
has_obo_namespace: reaction
id: UPa:UCR01567

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00639

Axiom
annotated source: ATP + thymidine = ADP + dTMP
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + thymidine = ADP + dTMP
annotated property: database_cross_reference
annotated target: KEGG:R01567

MetaCyc REACTION
type: Axiom
annotated source: ATP + thymidine = ADP + dTMP
annotated property: database_cross_reference
annotated target: METACYC:THYKI-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: ATP + thymidine = ADP + dTMP
annotated property: database_cross_reference
annotated target: RHEA:19132

phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00638
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00214
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00178
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00672
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00214
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00178
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00672
database_cross_reference: KEGG:R01570
database_cross_reference: METACYC:THYM-PHOSPH-RXN
database_cross_reference: RHEA:16040
has_obo_namespace: reaction
id: UPa:UCR01570

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00638

Axiom
annotated source: phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine
annotated property: subClassOf
annotated target: Restriction
direction: RL
order: 1

KEGG reaction
type: Axiom
annotated source: phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine
annotated property: database_cross_reference
annotated target: KEGG:R01570

MetaCyc REACTION
type: Axiom
annotated source: phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine
annotated property: database_cross_reference
annotated target: METACYC:THYM-PHOSPH-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine
annotated property: database_cross_reference
annotated target: RHEA:16040

D-arabinose + NAD(+) = D-arabinono-1,4-lactone + H(+) + NADH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00977
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00216
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00652
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00216
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00652
database_cross_reference: KEGG:R01574
database_cross_reference: METACYC:D-ARABINOSE-1-DEHYDROGENASE-RXN
database_cross_reference: RHEA:20460
has_obo_namespace: reaction
id: UPa:UCR01574

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00977

Axiom
annotated source: D-arabinose + NAD(+) = D-arabinono-1,4-lactone + H(+) + NADH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-arabinose + NAD(+) = D-arabinono-1,4-lactone + H(+) + NADH
annotated property: database_cross_reference
annotated target: KEGG:R01574

MetaCyc REACTION
type: Axiom
annotated source: D-arabinose + NAD(+) = D-arabinono-1,4-lactone + H(+) + NADH
annotated property: database_cross_reference
annotated target: METACYC:D-ARABINOSE-1-DEHYDROGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-arabinose + NAD(+) = D-arabinono-1,4-lactone + H(+) + NADH
annotated property: database_cross_reference
annotated target: RHEA:20460

D-arabinose + NADP(+) = D-arabinono-1,4-lactone + H(+) + NADPH
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00978
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00216
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00652
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00216
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00652
database_cross_reference: KEGG:R01575
database_cross_reference: METACYC:RXN-8776
database_cross_reference: RHEA:21895
has_obo_namespace: reaction
id: UPa:UCR01575

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00978

Axiom
annotated source: D-arabinose + NADP(+) = D-arabinono-1,4-lactone + H(+) + NADPH
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: D-arabinose + NADP(+) = D-arabinono-1,4-lactone + H(+) + NADPH
annotated property: database_cross_reference
annotated target: KEGG:R01575

MetaCyc REACTION
type: Axiom
annotated source: D-arabinose + NADP(+) = D-arabinono-1,4-lactone + H(+) + NADPH
annotated property: database_cross_reference
annotated target: METACYC:RXN-8776
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: D-arabinose + NADP(+) = D-arabinono-1,4-lactone + H(+) + NADPH
annotated property: database_cross_reference
annotated target: RHEA:21895

4-coumaroyl-CoA + 3 malonyl-CoA = 3,4',5-trihydroxystilbene + 4 CO(2) + 4 CoA
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00548
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00083
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00223
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC03582
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00083
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00223
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC03582
database_cross_reference: KEGG:R01614
database_cross_reference: METACYC:RXN-87
database_cross_reference: RHEA:11939
has_obo_namespace: reaction
id: UPa:UCR01614

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00548

Axiom
annotated source: 4-coumaroyl-CoA + 3 malonyl-CoA = 3,4',5-trihydroxystilbene + 4 CO(2) + 4 CoA
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 4-coumaroyl-CoA + 3 malonyl-CoA = 3,4',5-trihydroxystilbene + 4 CO(2) + 4 CoA
annotated property: database_cross_reference
annotated target: KEGG:R01614

MetaCyc REACTION
type: Axiom
annotated source: 4-coumaroyl-CoA + 3 malonyl-CoA = 3,4',5-trihydroxystilbene + 4 CO(2) + 4 CoA
annotated property: database_cross_reference
annotated target: METACYC:RXN-87
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 4-coumaroyl-CoA + 3 malonyl-CoA = 3,4',5-trihydroxystilbene + 4 CO(2) + 4 CoA
annotated property: database_cross_reference
annotated target: RHEA:11939

ATP + CoA + trans-4-coumarate = 4-coumaroyl-CoA + AMP + diphosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00547
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00010
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00811
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00013
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00020
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00223
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00010
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00811
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00013
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00020
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00223
database_cross_reference: KEGG:R01616
database_cross_reference: METACYC:4-COUMARATE--COA-LIGASE-RXN
database_cross_reference: RHEA:19644
has_obo_namespace: reaction
id: UPa:UCR01616

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00547

Axiom
annotated source: ATP + CoA + trans-4-coumarate = 4-coumaroyl-CoA + AMP + diphosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: ATP + CoA + trans-4-coumarate = 4-coumaroyl-CoA + AMP + diphosphate
annotated property: database_cross_reference
annotated target: KEGG:R01616

MetaCyc REACTION
type: Axiom
annotated source: ATP + CoA + trans-4-coumarate = 4-coumaroyl-CoA + AMP + diphosphate
annotated property: database_cross_reference
annotated target: METACYC:4-COUMARATE--COA-LIGASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: ATP + CoA + trans-4-coumarate = 4-coumaroyl-CoA + AMP + diphosphate
annotated property: database_cross_reference
annotated target: RHEA:19644

L-lysine + acetyl phosphate = N(6)-acetyl-L-lysine + phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00841
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00047
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00227
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00009
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02727
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00047
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00227
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00009
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02727
database_cross_reference: KEGG:R01620
database_cross_reference: METACYC:LYSINE-N-ACETYLTRANSFERASE-RXN
database_cross_reference: RHEA:14420
has_obo_namespace: reaction
id: UPa:UCR01620

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00841

Axiom
annotated source: L-lysine + acetyl phosphate = N(6)-acetyl-L-lysine + phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: L-lysine + acetyl phosphate = N(6)-acetyl-L-lysine + phosphate
annotated property: database_cross_reference
annotated target: KEGG:R01620

MetaCyc REACTION
type: Axiom
annotated source: L-lysine + acetyl phosphate = N(6)-acetyl-L-lysine + phosphate
annotated property: database_cross_reference
annotated target: METACYC:LYSINE-N-ACETYLTRANSFERASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: L-lysine + acetyl phosphate = N(6)-acetyl-L-lysine + phosphate
annotated property: database_cross_reference
annotated target: RHEA:14420

3-dehydroshikimate = 3,4-dihydroxybenzoate + H(2)O
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00179
subclass of: Restriction
  on property: has input
  some values from: UPa UPC02637
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC02637
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00230
database_cross_reference: KEGG:R01627
database_cross_reference: METACYC:DHSHIKIMATE-DEHYDRO-RXN
database_cross_reference: RHEA:24851
has_obo_namespace: reaction
id: UPa:UCR01627

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00179

Axiom
annotated source: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H(2)O
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H(2)O
annotated property: database_cross_reference
annotated target: KEGG:R01627

MetaCyc REACTION
type: Axiom
annotated source: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H(2)O
annotated property: database_cross_reference
annotated target: METACYC:DHSHIKIMATE-DEHYDRO-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H(2)O
annotated property: database_cross_reference
annotated target: RHEA:24851

3,4-dihydroxybenzoate + H(+) + NADH + O(2) = CO(2) + H(2)O + NAD(+) + benzene-1,2,4-triol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00955
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00004
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00003
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02814
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00004
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00230
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00003
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02814
database_cross_reference: KEGG:R01629
database_cross_reference: RHEA:30038
has_obo_namespace: reaction
id: UPa:UCR01629

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00955

Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADH + O(2) = CO(2) + H(2)O + NAD(+) + benzene-1,2,4-triol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADH + O(2) = CO(2) + H(2)O + NAD(+) + benzene-1,2,4-triol
annotated property: database_cross_reference
annotated target: KEGG:R01629

Rhea reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADH + O(2) = CO(2) + H(2)O + NAD(+) + benzene-1,2,4-triol
annotated property: database_cross_reference
annotated target: RHEA:30038

3,4-dihydroxybenzoate + H(+) + NADPH + O(2) = CO(2) + H(2)O + NADP(+) + benzene-1,2,4-triol
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00956
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00005
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00080
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00001
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00006
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC02814
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00005
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00080
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00230
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00001
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00006
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC02814
database_cross_reference: KEGG:R01630
database_cross_reference: RHEA:30042
has_obo_namespace: reaction
id: UPa:UCR01630

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00956

Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADPH + O(2) = CO(2) + H(2)O + NADP(+) + benzene-1,2,4-triol
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADPH + O(2) = CO(2) + H(2)O + NADP(+) + benzene-1,2,4-triol
annotated property: database_cross_reference
annotated target: KEGG:R01630

Rhea reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + H(+) + NADPH + O(2) = CO(2) + H(2)O + NADP(+) + benzene-1,2,4-triol
annotated property: database_cross_reference
annotated target: RHEA:30042

3,4-dihydroxybenzoate + O(2) = 3-carboxy-cis,cis-muconate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00264
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00007
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has output
  some values from: UPa UPC01163
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00007
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00230
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC01163
database_cross_reference: KEGG:R01631
database_cross_reference: METACYC:PROTOCATECHUATE-34-DIOXYGENASE-RXN
database_cross_reference: RHEA:10087
has_obo_namespace: reaction
id: UPa:UCR01631

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00264

Axiom
annotated source: 3,4-dihydroxybenzoate + O(2) = 3-carboxy-cis,cis-muconate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + O(2) = 3-carboxy-cis,cis-muconate
annotated property: database_cross_reference
annotated target: KEGG:R01631

MetaCyc REACTION
type: Axiom
annotated source: 3,4-dihydroxybenzoate + O(2) = 3-carboxy-cis,cis-muconate
annotated property: database_cross_reference
annotated target: METACYC:PROTOCATECHUATE-34-DIOXYGENASE-RXN
source: MetaCyc

Rhea reaction
type: Axiom
annotated source: 3,4-dihydroxybenzoate + O(2) = 3-carboxy-cis,cis-muconate
annotated property: database_cross_reference
annotated target: RHEA:10087

4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO(2)
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00730
subclass of: Restriction
  on property: has input
  some values from: UPa UPC03233
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00011
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00230
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC03233
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00011
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00230
database_cross_reference: KEGG:R01635
database_cross_reference: METACYC:45-DIHYDROXYPHTHALATE-DECARBOXYLASE-RXN
database_cross_reference: RHEA:24187
has_obo_namespace: reaction
id: UPa:UCR01635

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00730

Axiom
annotated source: 4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO(2)
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1

KEGG reaction
type: Axiom
annotated source: 4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO(2)
annotated property: database_cross_reference
annotated target: KEGG:R01635

MetaCyc REACTION
type: Axiom
annotated source: 4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO(2)
annotated property: database_cross_reference
annotated target: METACYC:45-DIHYDROXYPHTHALATE-DECARBOXYLASE-RXN
source: Rhea

Rhea reaction
type: Axiom
annotated source: 4,5-dihydroxyphthalate = 3,4-dihydroxybenzoate + CO(2)
annotated property: database_cross_reference
annotated target: RHEA:24187

ATP + D-xylulose = ADP + D-xylulose 5-phosphate
type: Class
subclass of: process
subclass of: reaction
subclass of: Restriction
  on property: part of
  some values from: UPa UER00578
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00002
subclass of: Restriction
  on property: has input
  some values from: UPa UPC00310
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00008
subclass of: Restriction
  on property: has output
  some values from: UPa UPC00231
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00002
subclass of: Restriction
  on property: has input
  qualified cardinality: 1
  on class: UPa UPC00310
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00008
subclass of: Restriction
  on property: has output
  qualified cardinality: 1
  on class: UPa UPC00231
database_cross_reference: KEGG:R01639
database_cross_reference: METACYC:XYLULOKIN-RXN
database_cross_reference: RHEA:10967
has_obo_namespace: reaction
id: UPa:UCR01639

Restriction
on property: part of
qualified cardinality: 1
on class: UPa UER00578

Axiom
annotated source: ATP + D-xylulose = ADP + D-xylulose 5-phosphate
annotated property: subClassOf
annotated target: Restriction
direction: LR
order: 1