@prefix : . @prefix dc: . @prefix uo: . @prefix up: . @prefix gco: . @prefix owl: . @prefix rdf: . @prefix sio: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @prefix skos: . @prefix codao: . @prefix faldo: . @prefix glycan: . a owl:Ontology ; owl:versionInfo "1.1.3"@en ; dc:creator "Issaku Yamada"@en , "Daisuke Shinmachi"@en ; "2018-10-26"@en ; dc:creator "Kiyoko Aoki-Kinoshita"@en . # # # ################################################################# # # # # Annotation properties # # # ################################################################# # # # http://purl.org/dc/elements/1.1/identifier dc:identifier a owl:AnnotationProperty . # # http://purl.org/dc/terms/description a owl:AnnotationProperty . # # http://semanticscience.org/resource/example sio:example a owl:AnnotationProperty . # # http://semanticscience.org/resource/hasSynonym sio:hasSynonym a owl:AnnotationProperty ; dc:identifier "hasSynonym" ; rdfs:isDefinedBy . # # http://semanticscience.org/resource/subset sio:subset a owl:AnnotationProperty . # # # # ################################################################# # # # # Object Properties # # # ################################################################# # # # http://biohackathon.org/resource/faldo#location faldo:location a owl:ObjectProperty ; rdfs:comment "This is the link between the concept whose location you are annotating and its range or position. For example, when annotating the region that describes an exon, the exon would be the subject and the region would be the object of the triple or: 'active site' 'location' [is] 'position 3'."^^xsd:string ; rdfs:label "location"^^xsd:string . # # http://purl.jp/bio/12/glyco/conjugate#glycosylates_at gco:glycosylates_at a owl:ObjectProperty ; rdfs:domain _:genid1 . _:genid1 a owl:Class ; owl:unionOf _:genid3 . _:genid3 a rdf:List ; rdf:first glycan:Referenced_compound ; rdf:rest _:genid2 . _:genid2 a rdf:List ; rdf:first sio:SIO_000289 ; rdf:rest rdf:nil . gco:glycosylates_at rdfs:range glycan:Glycosylation_site ; rdfs:comment "This property is used to specify the glycosylation site of a referenced compound or a collection of saccharides."@en ; rdfs:label "glycosylates at"@en . # # http://purl.jp/bio/12/glyco/conjugate#has_amino_acid gco:has_amino_acid a owl:ObjectProperty ; rdfs:domain faldo:ExactPosition ; rdfs:range _:genid4 . _:genid4 a owl:Class ; owl:unionOf _:genid6 . _:genid6 a rdf:List ; rdf:first glycan:Glycosylated_AA ; rdf:rest _:genid5 . _:genid5 a rdf:List ; rdf:first sio:SIO_001224 ; rdf:rest rdf:nil . gco:has_amino_acid rdfs:comment "This property is used to specify the amino acid at an Exact position."@en ; rdfs:label "has amino acid"@en . # # http://purl.jp/bio/12/glyco/conjugate#has_attached_referenced_saccharide gco:has_attached_referenced_saccharide a owl:ObjectProperty ; rdfs:domain gco:Referenced_protein ; rdfs:range gco:Referenced_saccharide ; rdfs:comment "This property is used to specify the ReferencedSaccharide that glycosylated the Glycoconjugate."@en ; rdfs:label "has attached referenced saccharide"@en . # # http://purl.jp/bio/12/glyco/conjugate#has_protein gco:has_protein a owl:ObjectProperty ; rdfs:subPropertyOf glycan:has_compound ; rdfs:domain gco:Referenced_protein ; rdfs:range glycan:Glycoprotein ; rdfs:comment "This property is used to specify the protein component of a glycoprotein."@en ; rdfs:label "has protein"@en . # # http://purl.jp/bio/12/glyco/conjugate#has_protein_part gco:has_protein_part a owl:ObjectProperty ; rdfs:domain gco:Referenced_glycoconjugate ; rdfs:range gco:Referenced_protein ; rdfs:comment "\"has protein part\" is a relation between a referenced glycoconjugate and a referenced protein, where the referenced protein is part of referenced glycoconjugete."@en ; rdfs:label "has protein part"@en . # # http://purl.jp/bio/12/glyco/conjugate#has_saccharide_part gco:has_saccharide_part a owl:ObjectProperty ; rdfs:domain gco:Referenced_glycoconjugate ; rdfs:range gco:Referenced_saccharide ; rdfs:comment "\"has saccharide part\" is a relation between a referenced glycoconjugate and a referenced saccharide, where the referenced saccharide is part of referenced glycoconjugete."@en ; rdfs:label "has saccharide part"@en . # # http://purl.jp/bio/12/glyco/conjugate#max_relative_abundance gco:max_relative_abundance a owl:ObjectProperty ; rdfs:domain gco:Relative_abundance ; rdfs:range gco:Max_relative_abundance ; rdfs:comment "This property is used to specify the upper value in the ratio of components."@en ; rdfs:label "max relative abundance"@en . # # http://purl.jp/bio/12/glyco/conjugate#min_relative_abundance gco:min_relative_abundance a owl:ObjectProperty ; rdfs:domain gco:Relative_abundance ; rdfs:range gco:Min_relative_abundance ; rdfs:comment "This property is used to specify the lower value in the ratio of components."@en ; rdfs:label "min relative abundance"@en . # # http://purl.jp/bio/12/glyco/conjugate#relative_abundance_percentage gco:relative_abundance_percentage a owl:ObjectProperty ; rdfs:domain _:genid7 . _:genid7 a owl:Class ; owl:unionOf _:genid9 . _:genid9 a rdf:List ; rdf:first sio:SIO_000289 ; rdf:rest _:genid8 . _:genid8 a rdf:List ; rdf:first sio:SIO_001258 ; rdf:rest rdf:nil . gco:relative_abundance_percentage rdfs:range gco:Relative_abundance ; rdfs:comment "This property is userd to specify the ratio at which a saccharide or collection of saccharides is found to glycosylate the glycoconjugate."@en ; rdfs:label "relative abundance percentage"@en . # # http://purl.jp/bio/12/glyco/glycan#glycosylated_at glycan:glycosylated_at a owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain _:genid10 . _:genid10 a owl:Class ; owl:unionOf _:genid12 . _:genid12 a rdf:List ; rdf:first gco:Referenced_lipid ; rdf:rest _:genid11 . _:genid11 a rdf:List ; rdf:first gco:Referenced_protein ; rdf:rest rdf:nil . glycan:glycosylated_at rdfs:range glycan:Glycosylation_site ; rdfs:comment "This property is used to specify the glycosylation site of glycoconjugate."@en ; rdfs:label "glycosylated at"@en . # # http://purl.jp/bio/12/glyco/glycan#has_association glycan:has_association a owl:ObjectProperty ; rdfs:domain glycan:Referenced_compound ; rdfs:range sio:SIO_000897 ; rdfs:label "has association"@en . # # http://purl.jp/bio/12/glyco/glycan#has_compound glycan:has_compound a owl:ObjectProperty ; rdfs:label "has compound"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#has_glycan glycan:has_glycan a owl:ObjectProperty ; rdfs:subPropertyOf glycan:has_compound ; a owl:FunctionalProperty ; rdfs:domain glycan:Referenced_compound ; rdfs:range glycan:Saccharide ; rdfs:comment "The glycan object referenced by this subject."^^xsd:string ; rdfs:label "has glycan"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#has_glycosylated_AA glycan:has_glycosylated_AA a owl:ObjectProperty ; rdfs:domain _:genid13 . _:genid13 a owl:Class ; owl:unionOf _:genid15 . _:genid15 a rdf:List ; rdf:first gco:Referenced_protein ; rdf:rest _:genid14 . _:genid14 a rdf:List ; rdf:first glycan:Glycoprotein ; rdf:rest rdf:nil . glycan:has_glycosylated_AA rdfs:range glycan:Glycosylated_AA ; rdfs:comment "This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide. "^^xsd:string ; rdfs:label "has glycosylated amino acid"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#has_lipid glycan:has_lipid a owl:ObjectProperty ; rdfs:subPropertyOf glycan:has_compound ; rdfs:domain gco:Referenced_lipid ; rdfs:range glycan:Glycolipid ; rdfs:comment "This property is used to specify the lipid component of a glycolipid."@en ; rdfs:label "has lipid"@en . # # http://purl.jp/bio/12/glyco/glycan#has_saccharide_set glycan:has_saccharide_set a owl:ObjectProperty ; rdfs:domain gco:Referenced_protein ; rdfs:range sio:SIO_000289 ; rdfs:comment "This property is used to specify the set of saccharides attached to a protein, when the glycosylation site is unknown or known."@en ; rdfs:label "has saccharide set"@en . # # http://purl.jp/bio/12/glyco/glycan#has_taxon glycan:has_taxon a owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain glycan:Source_natural ; rdfs:range up:Taxon ; rdfs:comment "Species information of the source."^^xsd:string ; rdfs:label "has taxon"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#is_from_source glycan:is_from_source a owl:ObjectProperty ; rdfs:domain glycan:Referenced_compound ; rdfs:range glycan:Source ; rdfs:comment "Source annotation for a referenced compound."^^xsd:string ; rdfs:label "is from source"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#method glycan:method a owl:ObjectProperty ; rdfs:comment "This property is used to specify the method type of chemical modification process."@en ; rdfs:label "method"@en . # # http://purl.jp/bio/12/glyco/glycan#published_in glycan:published_in a owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain _:genid16 . _:genid16 a owl:Class ; owl:unionOf _:genid18 . _:genid18 a rdf:List ; rdf:first glycan:Evidence ; rdf:rest _:genid17 . _:genid17 a rdf:List ; rdf:first glycan:Referenced_compound ; rdf:rest rdf:nil . glycan:published_in rdfs:range glycan:Citation ; rdfs:comment "Reference information for the subject."^^xsd:string ; rdfs:label "published in"^^xsd:string . # # http://purl.uniprot.org/core/annotation up:annotation a owl:ObjectProperty ; rdfs:domain up:Protein ; rdfs:range up:Annotation ; rdfs:comment "Attaches an annotation to a resource."^^xsd:string ; rdfs:isDefinedBy ; rdfs:label "annotation"^^xsd:string . # # http://purl.uniprot.org/core/commonName up:commonName a owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain up:Taxon ; rdfs:isDefinedBy ; rdfs:label "common name"^^xsd:string . # # http://semanticscience.org/resource/SIO_000221 sio:SIO_000221 a owl:ObjectProperty , owl:FunctionalProperty ; rdfs:range sio:SIO_000074 ; dc:identifier "SIO_000221" ; "has unit is a relation between a quantity and the unit it is a multiple of."@en ; sio:subset "core" ; rdfs:isDefinedBy ; rdfs:label "has unit"@en . # # http://semanticscience.org/resource/SIO_000313 sio:SIO_000313 a owl:ObjectProperty ; owl:inverseOf sio:SIO_000369 ; rdfs:domain sio:SIO_000289 ; rdfs:range sio:SIO_001258 ; dc:identifier "SIO_000313" ; "is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is."@en ; sio:subset "core" ; rdfs:isDefinedBy ; rdfs:label "is component part of"@en . # # http://semanticscience.org/resource/SIO_000369 sio:SIO_000369 a owl:ObjectProperty ; dc:identifier "SIO_000369" ; "has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is."@en ; sio:example "a human has blood as a component part"@en ; rdfs:isDefinedBy ; rdfs:label "has component part"@en . # # http://semanticscience.org/resource/SIO_000628 sio:SIO_000628 a owl:ObjectProperty ; dc:identifier "SIO_000628" ; "refers to is a relation between one entity and the entity that it makes reference to."@en ; sio:subset "core" , "nlp+" ; rdfs:isDefinedBy , "http://semanticscience.org/ontology/sio.owl"^^xsd:anyURI ; rdfs:label "refers to"@en . # # # # ################################################################# # # # # Data properties # # # ################################################################# # # # http://biohackathon.org/resource/faldo#position faldo:position a owl:DatatypeProperty ; rdfs:domain faldo:ExactPosition ; rdfs:range _:genid19 . _:genid19 a rdfs:Datatype ; owl:onDatatype xsd:integer ; owl:withRestrictions _:genid20 . _:genid20 a rdf:List ; rdf:first _:genid21 . _:genid21 xsd:minInclusive "1"^^xsd:integer . _:genid20 rdf:rest rdf:nil . faldo:position rdfs:comment "Denoted in 1-based closed coordinates, i.e. the position on the first amino acid or nucleotide of a sequence has the value 1. For nucleotide sequences we count from the 5'end of the sequence, while for Aminoacid sequences we start counting from the N-Terminus."^^xsd:string , "The position value is the offset along the reference where this position is found. Thus the only the position value in combination with the reference determines where a position is."^^xsd:string ; rdfs:label "position"^^xsd:string . # # http://purl.jp/bio/12/glyco/conjugate#amino__acid_length gco:amino__acid_length a owl:DatatypeProperty ; rdfs:domain glycan:Glycoprotein ; rdfs:range xsd:integer ; rdfs:comment "The number of amino acids of protein or peptide."@en ; rdfs:label "amino acid length"@en . # # http://semanticscience.org/resource/SIO_000300 sio:SIO_000300 a owl:DatatypeProperty , owl:FunctionalProperty ; dc:identifier "SIO_000300" ; "A relation between a informational entity and its actual value (numeric, date, text, etc)."@en ; sio:subset "core" , "nlp" , "relations" , "sadi"@en ; rdfs:isDefinedBy ; rdfs:label "has value"@en . # # # # ################################################################# # # # # Classes # # # ################################################################# # # # http://biohackathon.org/resource/faldo#ExactPosition faldo:ExactPosition a owl:Class ; rdfs:subClassOf faldo:Position , _:genid22 . _:genid22 a owl:Restriction ; owl:onProperty faldo:position ; owl:cardinality "1"^^xsd:nonNegativeInteger . faldo:ExactPosition owl:disjointWith faldo:OneOfPosition ; rdfs:comment "A position that is exactly known."^^xsd:string ; rdfs:label "Exact position"^^xsd:string . # # http://biohackathon.org/resource/faldo#FuzzyPosition faldo:FuzzyPosition a owl:Class ; rdfs:subClassOf faldo:Position ; rdfs:comment "A position that lacks exact data."^^xsd:string ; rdfs:label "Fuzzy position"^^xsd:string . # # http://biohackathon.org/resource/faldo#OneOfPosition faldo:OneOfPosition a owl:Class ; rdfs:subClassOf faldo:FuzzyPosition ; rdfs:comment "The position is known to be one of the more detailed positions listed by the location predicate."^^xsd:string ; rdfs:label "One of positions"^^xsd:string . # # http://biohackathon.org/resource/faldo#Position faldo:Position a owl:Class ; rdfs:comment "Position"^^xsd:string , "Superclass for the general concept of a position on a sequence. The sequence is designated with the reference predicate."^^xsd:string . # # http://purl.glycoinfo.org/ontology/codao#Compound_disease_association codao:Compound_disease_association a owl:Class ; rdfs:subClassOf sio:SIO_000897 ; rdfs:label "Compound Disease Association"@en . # # http://purl.jp/bio/12/glyco/conjugate#Max_relative_abundance gco:Max_relative_abundance a owl:Class ; rdfs:comment "Maximum percentage of abundance"@en ; rdfs:label "Max relative abundance"@en . # # http://purl.jp/bio/12/glyco/conjugate#Min_relative_abundance gco:Min_relative_abundance a owl:Class ; rdfs:comment "Minimum percentage of abundance"@en ; rdfs:label "Min relative abundance"@en . # # http://purl.jp/bio/12/glyco/conjugate#Referenced_glycoconjugate gco:Referenced_glycoconjugate a owl:Class ; rdfs:subClassOf glycan:Referenced_compound ; rdfs:comment "Correlation class, which connects a referenced saccharide, referenced protein and referenced lipd classes."@en ; rdfs:label "Referenced Glycoconjugate"@en . # # http://purl.jp/bio/12/glyco/conjugate#Referenced_lipid gco:Referenced_lipid a owl:Class ; rdfs:subClassOf glycan:Referenced_compound ; rdfs:comment "Correlation class, which connects a Glycolipid, Glycosylation_site, and Referenced_Saccharide class."@en ; rdfs:label "Referenced Lipid"@en . # # http://purl.jp/bio/12/glyco/conjugate#Referenced_protein gco:Referenced_protein a owl:Class ; rdfs:subClassOf glycan:Referenced_compound ; rdfs:comment "Correlation class, which connects a protein compex, Glycoprotein, Glycosylation_site, glycosylated_AA and Referenced_Saccharide class."@en ; rdfs:label "Referenced Protein"@en . # # http://purl.jp/bio/12/glyco/conjugate#Referenced_saccharide gco:Referenced_saccharide a owl:Class ; rdfs:subClassOf glycan:Referenced_compound ; rdfs:comment "Correlation class, which connects a Saccharide, Relative_abundance, Saccharide_set, Glycosylation_site and Referenced_protein/lipid class."@en ; rdfs:label "Referenced Saccharide"@en . # # http://purl.jp/bio/12/glyco/conjugate#Relative_abundance gco:Relative_abundance a owl:Class ; rdfs:comment "Relative abundance (percentage) of saccharides. e.g.,"@en ; rdfs:label "Relative Abundance"@en . # # http://purl.jp/bio/12/glyco/glycan#Citation glycan:Citation a owl:Class ; owl:equivalentClass glycan:citation ; rdfs:comment """Initial class name is capitalized. \"glycan:Citation\""""@en , "References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on."^^xsd:string ; rdfs:label "Citation"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Compound glycan:Compound a owl:Class ; owl:equivalentClass glycan:compound . # # http://purl.jp/bio/12/glyco/glycan#Evidence glycan:Evidence a owl:Class ; owl:equivalentClass glycan:evidence . # # http://purl.jp/bio/12/glyco/glycan#Glycoconjugate glycan:Glycoconjugate a owl:Class ; owl:equivalentClass glycan:glycoconjugate . # # http://purl.jp/bio/12/glyco/glycan#Glycolipid glycan:Glycolipid a owl:Class ; owl:equivalentClass :glycolipid ; rdfs:subClassOf glycan:Glycoconjugate ; rdfs:comment "Lipid with saccharide(s) attached by glycosidic bond(s). "^^xsd:string ; rdfs:label "Glycolipid"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Glycopeptide glycan:Glycopeptide a owl:Class ; owl:equivalentClass glycan:glycopeptide . # # http://purl.jp/bio/12/glyco/glycan#Glycoprotein glycan:Glycoprotein a owl:Class ; owl:equivalentClass glycan:glycoprotein ; rdfs:subClassOf glycan:Glycoconjugate , up:Protein ; rdfs:comment "A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated."^^xsd:string , """Initial class name is capitalized. \"glycan:Glycoprotein"""@en ; rdfs:label "Glycoprotein"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Glycosylated_AA glycan:Glycosylated_AA a owl:Class ; owl:equivalentClass glycan:glycosylated_AA ; rdfs:subClassOf glycan:Glycoconjugate ; rdfs:comment "An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein."^^xsd:string ; rdfs:label "Glycosylated Amino Acid"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Glycosylation_site glycan:Glycosylation_site a owl:Class ; rdfs:subClassOf up:Glycosylation_Annotation ; rdfs:comment "A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage."@en ; rdfs:label "Glycosylation Site"@en . # # http://purl.jp/bio/12/glyco/glycan#Referenced_compound glycan:Referenced_compound a owl:Class ; owl:equivalentClass glycan:referenced_compound ; rdfs:comment """Initial class name is capitalized. \"glycan:Referenced_compound\""""@en , "Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication. "^^xsd:string ; rdfs:label "Referenced Compound"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Saccharide glycan:Saccharide a owl:Class ; owl:equivalentClass glycan:saccharide ; rdfs:subClassOf glycan:Compound ; rdfs:comment """Initial class name is capitalized. \"glycna:Saccharide\""""@en , "Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans."^^xsd:string ; rdfs:label "Saccharide"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Source glycan:Source a owl:Class ; owl:equivalentClass glycan:source ; rdfs:comment """Initial class name is capitalized. \"glycan:Source\""""^^xsd:string , "Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan."^^xsd:string ; rdfs:label "Source"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#Source_natural glycan:Source_natural a owl:Class ; owl:equivalentClass glycan:source_natural ; rdfs:subClassOf glycan:Source ; rdfs:comment "Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on."^^xsd:string , """Initial class name is capitalized. \"glycan:Source_natural\""""@en ; rdfs:label "Source Natural"^^xsd:string . # # http://purl.jp/bio/12/glyco/glycan#citation glycan:citation a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#compound glycan:compound a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#evidence glycan:evidence a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#glycoconjugate glycan:glycoconjugate a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#glycopeptide glycan:glycopeptide a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#glycoprotein glycan:glycoprotein a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#glycosylated_AA glycan:glycosylated_AA a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#referenced_compound glycan:referenced_compound a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#saccharide glycan:saccharide a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#source glycan:source a owl:Class . # # http://purl.jp/bio/12/glyco/glycan#source_natural glycan:source_natural a owl:Class . # # http://purl.jp/bio/12/glyco/glycoconjugate#glycolipid :glycolipid a owl:Class . # # http://purl.obolibrary.org/obo/UO_0000193 a owl:Class ; owl:equivalentClass _:genid23 . _:genid23 a owl:Class ; owl:oneOf _:genid24 . _:genid24 a rdf:List ; rdf:first ; rdf:rest rdf:nil . # # http://purl.uniprot.org/core/Annotation up:Annotation a owl:Class ; rdfs:comment "Description of a resource on a specific topic."^^xsd:string ; rdfs:label "Annotation"^^xsd:string . # # http://purl.uniprot.org/core/Glycosylation_Annotation up:Glycosylation_Annotation a owl:Class ; rdfs:comment "Describes the occurrence of the attachment of a glycan (mono- or polysaccharide) to a residue of a protein."^^xsd:string ; rdfs:label "Glycosylation Annotation"^^xsd:string ; rdfs:seeAlso . # # http://purl.uniprot.org/core/Protein up:Protein a owl:Class ; rdfs:comment "Description of a protein."^^xsd:string ; rdfs:label "Protein"^^xsd:string . # # http://purl.uniprot.org/core/Taxon up:Taxon a owl:Class ; rdfs:comment "An element of a taxonomy for classifying life forms."^^xsd:string ; rdfs:isDefinedBy ; rdfs:label "Taxon"^^xsd:string ; rdfs:seeAlso . # # http://semanticscience.org/resource/SIO_000000 sio:SIO_000000 a owl:Class ; dc:identifier "SIO_000000" ; "Every thing is an entity."@en ; sio:subset "core" ; rdfs:isDefinedBy ; rdfs:label "entity"@en . # # http://semanticscience.org/resource/SIO_000074 sio:SIO_000074 a owl:Class ; dc:identifier "SIO_000074" ; "A unit of measurement is a definite magnitude of a physical quantity, defined and adopted by convention and/or by law, that is used as a standard for measurement of the same physical quantity."@en ; rdfs:isDefinedBy ; rdfs:label "unit of measurement"@en . # # http://semanticscience.org/resource/SIO_000075 sio:SIO_000075 a owl:Class ; dc:identifier "SIO_000075" ; "A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms."@en ; sio:subset "math+" ; rdfs:isDefinedBy ; rdfs:label "mathematical entity"@en . # # http://semanticscience.org/resource/SIO_000289 sio:SIO_000289 a owl:Class ; rdfs:subClassOf sio:SIO_000075 ; dc:identifier "SIO_000289" ; "A set is a collection of entities, for which there may be zero members."@en ; rdfs:isDefinedBy ; rdfs:label "set"@en . # # http://semanticscience.org/resource/SIO_000897 sio:SIO_000897 a owl:Class ; rdfs:subClassOf sio:SIO_000075 , _:genid25 . _:genid25 a owl:Restriction ; owl:onProperty sio:SIO_000628 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass sio:SIO_000000 . sio:SIO_000897 dc:identifier "SIO_000897" ; "An assocation is a relationship between two or more entities derived by some informational analysis."@en ; rdfs:isDefinedBy ; rdfs:label "association"@en . # # http://semanticscience.org/resource/SIO_001018 sio:SIO_001018 a owl:Class ; dc:identifier "SIO_001018" ; "A ratio is a relationship between two numbers of the same kind expressed arithmetically as a dimensionless quotient of the two which explicitly indicates how many times the first number contains the second."@en ; rdfs:isDefinedBy ; rdfs:label "ratio"@en . # # http://semanticscience.org/resource/SIO_001224 sio:SIO_001224 a owl:Class ; dc:identifier "SIO_001224" ; "An amino acid is an organic molecule composed of a carbon bonded to four different groups: a carboxyl group, an amino group, an R group, and a hydrogen atom. In the case of glycine, the R group is another hydrogen atom."@en ; rdfs:isDefinedBy ; rdfs:label "amino acid"@en . # # http://semanticscience.org/resource/SIO_001258 sio:SIO_001258 a owl:Class ; rdfs:subClassOf sio:SIO_000075 ; dc:identifier "SIO_001258" ; "set item is an item in a set."@en ; rdfs:isDefinedBy ; rdfs:label "set item"@en . # # http://semanticscience.org/resource/SIO_010497 sio:SIO_010497 a owl:Class ; dc:identifier "SIO_010497" ; "A protein complex is a molecular complex composed of at least two polypeptide chains."@en ; rdfs:isDefinedBy ; rdfs:label "protein complex"@en . # # # # ################################################################# # # # # Individuals # # # ################################################################# # # # http://purl.obolibrary.org/obo/UO_0000193 a owl:NamedIndividual . # # # # ################################################################# # # # # Annotations # # # ################################################################# # # rdfs:comment "\"A dimensionless percent unit which denotes the homogeneity of a biomaterial.\" [MGED:MGED]"^^xsd:string ; rdfs:label "purity percentage"^^xsd:string . # # Generated by the OWL API (version 4.2.6.20160910-2108) https://github.com/owlcs/owlapi