Annotation
literal: Daisuke Shinmachi

Annotation
literal: Hiro Sawaki

Annotation
literal: Issaku Yamada

Annotation
literal: Kiyoko Aoki-Kinoshita

Annotation
literal: Masaaki Matsubara

Annotation
literal: Matthew Campbell

Annotation
literal: Philip Toukach

Annotation
literal: Rene Ranzinger

Annotation
literal: Shin Kawano

Annotation
literal: Shujiro Okuda

Annotation
literal: 2013-02-10T23:11:00

Annotation
literal: 1.2.1

DataPropertyAssertion
literal: BCSDB

DataPropertyAssertion
literal: CCSD

DataPropertyAssertion
literal: Carint

DataPropertyAssertion
literal: CAZy

DataPropertyAssertion
literal: CFG

DataPropertyAssertion
literal: CfgGBP

DataPropertyAssertion
literal: CfgGlycoenzyme

DataPropertyAssertion
literal: ChEBI

DataPropertyAssertion
literal: ChemSpider

DataPropertyAssertion
literal: GlyAffinity

DataPropertyAssertion
literal: GlycO

DataPropertyAssertion
literal: GlycoBase(Dublin)

DataPropertyAssertion
literal: GlycoBase(Lille)

DataPropertyAssertion
literal: GlycoMapsDB

DataPropertyAssertion
literal: GlycomeDB

DataPropertyAssertion
literal: GlycoNAVI

DataPropertyAssertion
literal: GlycoNMR

DataPropertyAssertion
literal: GLYCOSCIENCES.de

DataPropertyAssertion
literal: JCGGDB

DataPropertyAssertion
literal: KEGG

DataPropertyAssertion
literal: MonosaccharideDB

DataPropertyAssertion
literal: PDB

DataPropertyAssertion
literal: PFCSDB

DataPropertyAssertion
literal: PubChem

DataPropertyAssertion
literal: SMSA

DataPropertyAssertion
literal: UniCarb-DB

DataPropertyAssertion
literal: UniCarbKB

AnnotationAssertion
IRI: #CE_Digest_Electrogram
literal: CE Digest Electrogram

AnnotationAssertion
IRI: #CE_Electrogram
literal: CE Electrogram

AnnotationAssertion
IRI: #CE_Property
literal: Class that contains Capillary Electrophoresis properties.

AnnotationAssertion
IRI: #CE_Property
literal: CE Property

AnnotationAssertion
IRI: #CarbohydrateFormat
literal: Instances of this class are the carbohydrate sequence formats.

AnnotationAssertion
IRI: #CarbohydrateFormat
literal: Carbohydrate Format

AnnotationAssertion
IRI: #Citation
literal: Initial class name is capitalized. "glycan:Citation"

AnnotationAssertion
IRI: #Citation
literal: Citation

AnnotationAssertion
IRI: #D2O
literal: Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen.

AnnotationAssertion
IRI: #D2O
literal: D2O

AnnotationAssertion
IRI: #DMSO
literal: Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water.

AnnotationAssertion
IRI: #DMSO
literal: DMSO

AnnotationAssertion
IRI: #Evidence_HPLC
literal: Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a HPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.

AnnotationAssertion
IRI: #Evidence_HPLC
literal: Evidence HPLC

AnnotationAssertion
IRI: #Evidence_RPUPLC
literal: Reverse Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites. Retention times are normally compared with an arabinose ladder and assigned arabinose units (AU).

AnnotationAssertion
IRI: #Evidence_RPUPLC
literal: Evidence RPLC

AnnotationAssertion
IRI: #Evidence_UPLC
literal: Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a UPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.

AnnotationAssertion
IRI: #Evidence_UPLC
literal: Evidence UPLC

AnnotationAssertion
IRI: #Glycam
literal: This class depicts a GlyCAM format of glycans

AnnotationAssertion
IRI: #GlycoCT
literal: This class depicts a GlycoCT format of glycans

AnnotationAssertion
IRI: #Glycoprotein
literal: Glycoprotein

AnnotationAssertion
IRI: #Glycoprotein
literal: Initial class name is capitalized. "glycan:Glycoprotein

AnnotationAssertion
IRI: #Glycosylation_site
literal: A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage.

AnnotationAssertion
IRI: #Glycosylation_site
literal: Glycosylation Site

AnnotationAssertion
IRI: #H2O
literal: Water

AnnotationAssertion
IRI: #IupacCondensed
literal: This class depicts a IUPAC condensed format of glycans

AnnotationAssertion
IRI: #IupacExtended
literal: This class depicts a IUPAC Extended format of glycans.

AnnotationAssertion
IRI: #LinearCode
literal: This class depicts a Linear Code format of glycans

AnnotationAssertion
IRI: #N-glycan
literal: A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579).

AnnotationAssertion
IRI: #N-glycan
literal: N-glycan

AnnotationAssertion
IRI: #O-glycan
literal: A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration.

AnnotationAssertion
IRI: #O-glycan
literal: O-glycan

AnnotationAssertion
IRI: #PNGaseA_release
literal: Release of glycan that is used PNGaseA.

AnnotationAssertion
IRI: #PNGaseA_release
literal: PNGaseA release

AnnotationAssertion
IRI: #PNGaseF_release
literal: Release of glycan that is used PNGaseF.

AnnotationAssertion
IRI: #PNGaseF_release
literal: PNGaseF release

AnnotationAssertion
IRI: #Referenced_compound
literal: Initial class name is capitalized. "glycan:Referenced_compound"

AnnotationAssertion
IRI: #Referenced_compound
literal: Referenced Compound

AnnotationAssertion
IRI: #Saccharide
literal: Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans.

AnnotationAssertion
IRI: #Saccharide
literal: Saccharide

AnnotationAssertion
IRI: #Source_natural
literal: Initial class name is capitalized. "glycan:Source_natural"

AnnotationAssertion
IRI: #Source_natural
literal: Source Natural

AnnotationAssertion
IRI: #Wurcs
literal: This class depicts a WURCS format of glycans

AnnotationAssertion
IRI: #_Fucosidase
literal: Glycan(s) treated with alpha1-2,4,6 Fucosidase that catalyses the hydrolysis of α1-2, α1-4, and α1-6 linked L-fucopyranosyl residues

AnnotationAssertion
IRI: #_Fucosidase
literal: Glycan(s) treated with alpha1-3,4 Fucosidase that catalyses the hydrolysis of α1-3 and α1-4 linked fucose residues

AnnotationAssertion
IRI: #_Fucosidase
literal: alpha1-2,4,6 Fucosidase

AnnotationAssertion
IRI: #_Fucosidase
literal: alpha1-3,4 Fucosidase

AnnotationAssertion
IRI: #_Galactosidase
literal: Glycan(s) treated with alpha1-3,6 Galactosidase that catalyses the hydrolysis of α1-3,6 linked D-galactopyranosyl residues

AnnotationAssertion
IRI: #_Galactosidase
literal: Glycans treated with alpha1-3,4,6 Galactosidase that catalyses the hydrolysis of α1-3, α1-4, and α1-6 linked D-galactopyranosyl residues

AnnotationAssertion
IRI: #_Galactosidase
literal: alpha1-3,4,6 Galactosidase

AnnotationAssertion
IRI: #_Galactosidase
literal: alpha1-3,6 Galactosidase

AnnotationAssertion
IRI: #_Mannosidase
literal: Glycan(s) treated with alpha1-2,3 Mannosidase that catalyses the hydrolysis of α1-2 and α1-3 linked D-Mannopyranosyl residues

AnnotationAssertion
IRI: #_Mannosidase
literal: alpha1-2,3 Mannosidase

AnnotationAssertion
IRI: #_Neuraminidase
literal: Glycan(s) treated with alpha2-3,6,8 Neuraminidase that removes α2-3, α2-6, and α2-8 linked N-acetyl-neuraminic acid residues

AnnotationAssertion
IRI: #_Neuraminidase
literal: alpha2-3,6,8 Neuraminidase

AnnotationAssertion
IRI: #_Neuraminidase_A
literal: Glycan(s) treated with alpha2-3,6,8,9 Neuraminidase A that removed all terminal sialic acids. Note some enzymes release α2-3 and α2-6 linkages at a higher rate than α2-8 and α2-9.

AnnotationAssertion
IRI: #_Neuraminidase_A
literal: alpha2-3,6,8,9 Neuraminidase A

AnnotationAssertion
IRI: #absolute_configuration
literal: Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown.

AnnotationAssertion
IRI: #absolute_configuration
literal: Absolute Configuration

AnnotationAssertion
IRI: #absolute_configuration_dexter
literal: dexter

AnnotationAssertion
IRI: #absolute_configuration_laevus
literal: laevus

AnnotationAssertion
IRI: #absolute_configuration_unknown
literal: unknown

AnnotationAssertion
IRI: #adduct
literal: Adduct

AnnotationAssertion
IRI: #adduct_ion
literal: Adduct Ion

AnnotationAssertion
IRI: #adduct_ion_h
literal: H+

AnnotationAssertion
IRI: #adduct_ion_na
literal: Na+

AnnotationAssertion
IRI: #aglycon
literal: Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan.

AnnotationAssertion
IRI: #aglycon
literal: Aglycon

AnnotationAssertion
IRI: #alanine
literal: Alanine

AnnotationAssertion
IRI: #allo
literal: allo

AnnotationAssertion
IRI: #alpha-N-acetylgalactosaminidase
literal: Glycan(s) treated with alpha-N-acetylgalactosaminidase that catalyzes the hydrolysis of α-linked D-N-acetylgalactosamine

AnnotationAssertion
IRI: #alpha-N-acetylgalactosaminidase
literal: alpha-N-acetylgalactosaminidase

AnnotationAssertion
IRI: #alpha1-2_Fucosidase
literal: Glycan(s) treated with alpha1-2 Fucosidase that catalyses the hydrolysis of linear α1-2 linked L-fucopyranosyl residues

AnnotationAssertion
IRI: #alpha1-2_Fucosidase
literal: alpha1-2 Fucosidase

AnnotationAssertion
IRI: #alpha1-6_Mannosidase
literal: Glycan(s) treated with alpha1-6 Mannosidase that removes α1-6 linked D-mannopyranosyl residues.

AnnotationAssertion
IRI: #alpha1-6_Mannosidase
literal: alpha1-6 Mannosidase

AnnotationAssertion
IRI: #alpha2-3_Neuraminidase
literal: Glycan(s) treated with alpha2-3 Neuraminidase that catalyses the hydrolysis of α2-3 N-acetyl-neuraminic acid residues from oligosaccharides. Note some α2-6 linked removed at a lower rate.

AnnotationAssertion
IRI: #alpha2-3_Neuraminidase
literal: alpha2-3 Neuraminidase

AnnotationAssertion
IRI: #alpha2-3_Neuraminidase_S
literal: Glycan treated with alpha2-3 Neuraminidase S

AnnotationAssertion
IRI: #alpha2-3_Neuraminidase_S
literal: alpha2-3 Neuraminidase S

AnnotationAssertion
IRI: #altro
literal: altro

AnnotationAssertion
IRI: #amino_acid
literal: Amino Acid

AnnotationAssertion
IRI: #aminoacridone
literal: Glycan labelled with 2-aminoacridone

AnnotationAssertion
IRI: #aminoacridone
literal: 2-aminoacridone

AnnotationAssertion
IRI: #aminobenzamide
literal: Glycan labelled with 2-aminobenzamide

AnnotationAssertion
IRI: #aminobenzamide
literal: 2-aminobenzamide

AnnotationAssertion
IRI: #aminobenzoic_acid
literal: Glycan labelled with 2-aminobenzoic acid

AnnotationAssertion
IRI: #aminobenzoic_acid
literal: 2-aminobenzoic acid

AnnotationAssertion
IRI: #aminopyridine
literal: Glycan labelled with 2-aminopyridine

AnnotationAssertion
IRI: #aminopyridine
literal: 2-aminopyridine

AnnotationAssertion
IRI: #anomer
literal: Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none.

AnnotationAssertion
IRI: #anomer
literal: Anomer

AnnotationAssertion
IRI: #anomer_alpha
literal: alpha

AnnotationAssertion
IRI: #anomer_beta
literal: beta

AnnotationAssertion
IRI: #anomer_none
literal: none

AnnotationAssertion
IRI: #anomer_unknown
literal: unknown

AnnotationAssertion
IRI: #antibody
literal: A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate.

AnnotationAssertion
IRI: #antibody
literal: Antibody

AnnotationAssertion
IRI: #arabino
literal: arabino

AnnotationAssertion
IRI: #arginine
literal: arginine

AnnotationAssertion
IRI: #asparagine
literal: asparagine

AnnotationAssertion
IRI: #aspartic_acid
literal: aspartic acid

AnnotationAssertion
IRI: #basetype
literal: Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions.

AnnotationAssertion
IRI: #basetype
literal: Basetype

AnnotationAssertion
IRI: #beta-N-Acetylglucosaminidase
literal: Glycan(s) treated with beta-N-Acetylglucosaminidase that catalyses the hydrolysis of terminal, non-reducing β-N-Acetylglucosamine residues

AnnotationAssertion
IRI: #beta-N-Acetylglucosaminidase
literal: beta-N-Acetylglucosaminidase

AnnotationAssertion
IRI: #beta-N-Acetylglucosaminidase_S
literal: Glycan treated with beta-N-Acetylglucosaminidase S

AnnotationAssertion
IRI: #beta-N-Acetylglucosaminidase_S
literal: beta-N-Acetylglucosaminidase S

AnnotationAssertion
IRI: #beta-N-Acetylhexosaminidase
literal: Glycan treated with beta-N-Acetylhexosaminidase that catalyses the hydrolysis of terminal β-D-N-acetyl-galactosamine and glucosamine residues from oligosaccharides.

AnnotationAssertion
IRI: #beta-N-Acetylhexosaminidase
literal: beta-N-Acetylhexosaminidase

AnnotationAssertion
IRI: #beta1-3_Galactosidase
literal: Glycan(s) treated with beta1-3 Galactosidase that catalyses the hydrolysis of β1-3 D-galactopyranosyl residues. Some enzymes known to cleave β1-6 but a lower rate.

AnnotationAssertion
IRI: #beta1-3_Galactosidase
literal: beta1-3 Galactosidase

AnnotationAssertion
IRI: #beta1-4_Galactosidase
literal: Glycan(s) treated with beta1-4 Galactosidase that catalyses the hydrolysis of β1-4 linked D-galactopyranosyl residues.

AnnotationAssertion
IRI: #beta1-4_Galactosidase
literal: beta1-4 Galactosidase

AnnotationAssertion
IRI: #beta_elimination
literal: Beta elimination that released glycan from glycoconjugate.

AnnotationAssertion
IRI: #beta_elimination
literal: beta elimination

AnnotationAssertion
IRI: #biological_repeat_unit
literal: A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized.

AnnotationAssertion
IRI: #biological_repeat_unit
literal: Biological Repeat Unit

AnnotationAssertion
IRI: #buffer
literal: A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid.

AnnotationAssertion
IRI: #buffer
literal: Buffer

AnnotationAssertion
IRI: #captured_by
literal: Object is compounds that have affinity to glycan or glycoconjugate.

AnnotationAssertion
IRI: #carbohydrate_format_carbbank
literal: carbbank

AnnotationAssertion
IRI: #carbohydrate_format_csdb
literal: csdb

AnnotationAssertion
IRI: #carbohydrate_format_glycoct
literal: glycoct

AnnotationAssertion
IRI: #carbohydrate_format_glyde2
literal: glyde2

AnnotationAssertion
IRI: #carbohydrate_format_iupac_condensed
literal: iupac condensed

AnnotationAssertion
IRI: #carbohydrate_format_iupac_extended
literal: iupac extended

AnnotationAssertion
IRI: #carbohydrate_format_iupac_short
literal: iupac short

AnnotationAssertion
IRI: #carbohydrate_format_kcf
literal: kcf

AnnotationAssertion
IRI: #carbohydrate_format_linearcode
literal: linearcode

AnnotationAssertion
IRI: #carbohydrate_format_linucs
literal: linucs

AnnotationAssertion
IRI: #carbohydrate_format_wurcs
literal: wurcs

AnnotationAssertion
IRI: #catalyzed_by
literal: Object is a reaction process.

AnnotationAssertion
IRI: #chemical_release
literal: Release of glycan that is used chemical reaction.

AnnotationAssertion
IRI: #chemical_release
literal: Chemical Release

AnnotationAssertion
IRI: #chemical_repeat_unit
literal: A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit.

AnnotationAssertion
IRI: #chemical_repeat_unit
literal: Chemical Repeat Unit

AnnotationAssertion
IRI: #citation
literal: References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on.

AnnotationAssertion
IRI: #citation
literal: Citation

AnnotationAssertion
IRI: #component
literal: Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan.

AnnotationAssertion
IRI: #component
literal: Component

AnnotationAssertion
IRI: #compound
literal: Superclass of types of glycan related molecules and fragments.

AnnotationAssertion
IRI: #compound
literal: Compound

AnnotationAssertion
IRI: #configuration
literal: Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration.

AnnotationAssertion
IRI: #configuration
literal: Configuration

AnnotationAssertion
IRI: #configuration_x
literal: x

AnnotationAssertion
IRI: #contained_in
literal: The subject is a structurally defined motif, and the object is a glycan structure or motif.

AnnotationAssertion
IRI: #core_modification
literal: Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened.

AnnotationAssertion
IRI: #core_modification
literal: Core Modification

AnnotationAssertion
IRI: #core_modification_type
literal: List of core modifications that can appear on a monosaccharide.

AnnotationAssertion
IRI: #core_modification_type
literal: Core Modification Type

AnnotationAssertion
IRI: #core_modification_type_acid
literal: Carboxyl (COOH) group.

AnnotationAssertion
IRI: #core_modification_type_acid
literal: acid

AnnotationAssertion
IRI: #core_modification_type_aldi
literal: Alditol: Reduction of the aldehyde group to CH2OH.

AnnotationAssertion
IRI: #core_modification_type_aldi
literal: aldi

AnnotationAssertion
IRI: #core_modification_type_anhydro
literal: Intramolecular anhydride.

AnnotationAssertion
IRI: #core_modification_type_anhydro
literal: anhydro

AnnotationAssertion
IRI: #core_modification_type_deoxy
literal: Deoxygenation of a position: The OH group is removed and replaced by a hydrogen atom.

AnnotationAssertion
IRI: #core_modification_type_deoxy
literal: deoxy

AnnotationAssertion
IRI: #core_modification_type_en
literal: Double bond in the basetype backbone. This modification implies that - unless explicitly stated with a deoxy modification - hydroxyl groups are preserved.

AnnotationAssertion
IRI: #core_modification_type_en
literal: en

AnnotationAssertion
IRI: #core_modification_type_enx
literal: Double bond in the basetype backbone with unknown deoxygenation pattern.

AnnotationAssertion
IRI: #core_modification_type_enx
literal: enx

AnnotationAssertion
IRI: #core_modification_type_geminal
literal: Loss of stereochemistry due to identical substituents with DEOXY and H_LOSE linkage types at a single position.

AnnotationAssertion
IRI: #core_modification_type_geminal
literal: geminal

AnnotationAssertion
IRI: #core_modification_type_keto
literal: A carbonyl group in the open chain version of a monosaccharide. This modification is omitted if it is only present at position 1 (standard aldose).

AnnotationAssertion
IRI: #core_modification_type_keto
literal: keto

AnnotationAssertion
IRI: #core_modification_type_sp
literal: Triple bond to a substituent.

AnnotationAssertion
IRI: #core_modification_type_sp
literal: sp

AnnotationAssertion
IRI: #core_modification_type_sp2
literal: Double bond to a substituent.

AnnotationAssertion
IRI: #core_modification_type_sp2
literal: sp2

AnnotationAssertion
IRI: #core_modification_type_yn
literal: Triple bond in the basetype backbone.

AnnotationAssertion
IRI: #core_modification_type_yn
literal: yn

AnnotationAssertion
IRI: #cyclic_glycan
literal: Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans.

AnnotationAssertion
IRI: #cyclic_glycan
literal: Cyclic Glycan

AnnotationAssertion
IRI: #cysteine
literal: cysteine

AnnotationAssertion
IRI: #d-alanine
literal: D-Alanine

AnnotationAssertion
IRI: #d-arginine
literal: d-arginine

AnnotationAssertion
IRI: #d-asparagine
literal: d-asparagine

AnnotationAssertion
IRI: #d-aspartic_acid
literal: d-aspartic acid

AnnotationAssertion
IRI: #d-cysteine
literal: d-cysteine

AnnotationAssertion
IRI: #d-glutamic_acid
literal: d-glutamic acid

AnnotationAssertion
IRI: #d-glutamine
literal: d-glutamine

AnnotationAssertion
IRI: #d-glycine
literal: d-glycine

AnnotationAssertion
IRI: #d-histidine
literal: d-histidine

AnnotationAssertion
IRI: #d-isoleucine
literal: d-isoleucine

AnnotationAssertion
IRI: #d-leucine
literal: d-leucine

AnnotationAssertion
IRI: #d-lysine
literal: d-lysine

AnnotationAssertion
IRI: #d-methionine
literal: d-methionine

AnnotationAssertion
IRI: #d-phenylalanine
literal: d-phenylalanine

AnnotationAssertion
IRI: #d-proline
literal: d-proline

AnnotationAssertion
IRI: #d-selenocysteine
literal: d-selenocysteine

AnnotationAssertion
IRI: #d-serine
literal: d-serine

AnnotationAssertion
IRI: #d-threonine
literal: d-threonine

AnnotationAssertion
IRI: #d-tryptophan
literal: d-tryptophan

AnnotationAssertion
IRI: #d-tyrosine
literal: d-tyrosine

AnnotationAssertion
IRI: #d-valine
literal: d-valine

AnnotationAssertion
IRI: #database_bcsdb
literal: BCSDB

AnnotationAssertion
IRI: #database_bcsdb
literal: http://csdb.glycoscience.ru/bacterial/

AnnotationAssertion
IRI: #database_bcsdb
literal: Bacterial Carbohydrate Structure DataBase

AnnotationAssertion
IRI: #database_carbbank
literal: CarbBank

AnnotationAssertion
IRI: #database_carbbank
literal: http://www.genome.jp/dbget-bin/www_bfind

AnnotationAssertion
IRI: #database_carbbank
literal: Complex Carbohydrate Structure Database

AnnotationAssertion
IRI: #database_carint
literal: Carint

AnnotationAssertion
IRI: #database_carint
literal: http://ws.glyconavi.org/carint/

AnnotationAssertion
IRI: #database_carint
literal: Carbohydrate Interaction Database

AnnotationAssertion
IRI: #database_category_bibliography
literal: bibliography

AnnotationAssertion
IRI: #database_category_cabohydrate_structure
literal: Database containing glycan structure information.

AnnotationAssertion
IRI: #database_category_cabohydrate_structure
literal: structure

AnnotationAssertion
IRI: #database_category_carbohydrate_conformation
literal: Database containing carbohydrate conformation

AnnotationAssertion
IRI: #database_category_carbohydrate_conformation
literal: carbohydrate conformation

AnnotationAssertion
IRI: #database_category_carbohydrate_interaction
literal: carbohydrate interaction

AnnotationAssertion
IRI: #database_category_chemical_compound
literal: Database of carbohydrates at the atomic level.

AnnotationAssertion
IRI: #database_category_chemical_compound
literal: chemical compound

AnnotationAssertion
IRI: #database_category_experimental
literal: Database of glycomics experiments such as NMR, MS, array data, etc-

AnnotationAssertion
IRI: #database_category_experimental
literal: experimental

AnnotationAssertion
IRI: #database_category_glycan_binding_protein
literal: glycan binding protein

AnnotationAssertion
IRI: #database_category_glycoenzyme
literal: glycoenyzme

AnnotationAssertion
IRI: #database_category_monosaccharide
literal: Database containing monosaccharide information.

AnnotationAssertion
IRI: #database_category_monosaccharide
literal: monosaccharide

AnnotationAssertion
IRI: #database_category_synthesis
literal: synthesis

AnnotationAssertion
IRI: #database_category_taxonomy
literal: Taxonomical information regarding glycans are available.

AnnotationAssertion
IRI: #database_category_taxonomy
literal: taxonomy

AnnotationAssertion
IRI: #database_category_tissue
literal: tissue

AnnotationAssertion
IRI: #database_cazy
literal: CAZy

AnnotationAssertion
IRI: #database_cazy
literal: http://www.cazy.org

AnnotationAssertion
IRI: #database_cazy
literal: Carbhoydrate-Active enZYmes

AnnotationAssertion
IRI: #database_cfg
literal: CFG

AnnotationAssertion
IRI: #database_cfg
literal: http://www.functionalglycomics.org/glycomics/molecule/jsp/carbohydrate/carbMoleculeHome.jsp

AnnotationAssertion
IRI: #database_cfg
literal: Consortium for Functional Glycomics Structure Database

AnnotationAssertion
IRI: #database_cfg_gbp
literal: CfgGBP

AnnotationAssertion
IRI: #database_cfg_gbp
literal: http://www.functionalglycomics.org/glycomics/molecule/jsp/gbpMolecule-home.jsp

AnnotationAssertion
IRI: #database_cfg_gbp
literal: CFG Glycan Binding Proteins

AnnotationAssertion
IRI: #database_cfg_glycoenzymes
literal: CfgGlycoenzyme

AnnotationAssertion
IRI: #database_cfg_glycoenzymes
literal: http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/geMolecule.jsp

AnnotationAssertion
IRI: #database_cfg_glycoenzymes
literal: CFG Glycosyltransferases DB

AnnotationAssertion
IRI: #database_chebi
literal: ChEBI

AnnotationAssertion
IRI: #database_chebi
literal: http://www.ebi.ac.uk/chebi/

AnnotationAssertion
IRI: #database_chebi
literal: Chemical Entities of Biological Interest

AnnotationAssertion
IRI: #database_chemspider
literal: ChemSpider

AnnotationAssertion
IRI: #database_chemspider
literal: http://www.chemspider.com/

AnnotationAssertion
IRI: #database_chemspider
literal: ChemSpider

AnnotationAssertion
IRI: #database_glyaffinity
literal: GlyAffinity

AnnotationAssertion
IRI: #database_glyaffinity
literal: http://www.glycosciences.de/affinity/browse.action

AnnotationAssertion
IRI: #database_glyaffinity
literal: GlyAffinity

AnnotationAssertion
IRI: #database_glyco
literal: GlycO

AnnotationAssertion
IRI: #database_glyco
literal: http://ccrc.uga.edu/ontology/GlycO/GlycO.owl

AnnotationAssertion
IRI: #database_glyco
literal: Glycomics Ontology

AnnotationAssertion
IRI: #database_glycobase_dublin
literal: GlycoBase(Dublin)

AnnotationAssertion
IRI: #database_glycobase_dublin
literal: http://glycobase.nibrt.ie/glycobase/show_nibrt.action

AnnotationAssertion
IRI: #database_glycobase_dublin
literal: GlycoBase(Dublin)

AnnotationAssertion
IRI: #database_glycobase_lille
literal: GlycoBase(Lille)

AnnotationAssertion
IRI: #database_glycobase_lille
literal: http://glycobase.univ-lille1.fr/base/

AnnotationAssertion
IRI: #database_glycobase_lille
literal: GlycoBase(Lille)

AnnotationAssertion
IRI: #database_glycomapsdb
literal: GlycoMapsDB

AnnotationAssertion
IRI: #database_glycomapsdb
literal: http://www.glycosciences.de/modeling/glycomapsdb/

AnnotationAssertion
IRI: #database_glycomapsdb
literal: GlycoMapsDB

AnnotationAssertion
IRI: #database_glycomedb
literal: GlycomeDB

AnnotationAssertion
IRI: #database_glycomedb
literal: http://www.glycome-db.org/

AnnotationAssertion
IRI: #database_glycomedb
literal: GlycomeDB

AnnotationAssertion
IRI: #database_glyconavi
literal: GlycoNAVI

AnnotationAssertion
IRI: #database_glyconavi
literal: http://ws.glyconavi.org/

AnnotationAssertion
IRI: #database_glyconavi
literal: GlycoNAVI

AnnotationAssertion
IRI: #database_glyconmr
literal: GlycoNMR

AnnotationAssertion
IRI: #database_glyconmr
literal: http://glycoinfolab.jp/GlycoNMR/

AnnotationAssertion
IRI: #database_glyconmr
literal: GlycoNMR

AnnotationAssertion
IRI: #database_glycosciences_de
literal: GLYCOSCIENCES.de

AnnotationAssertion
IRI: #database_glycosciences_de
literal: http://www.glycosciences.de/database/

AnnotationAssertion
IRI: #database_glycosciences_de
literal: GLYCOSCIENCES.de

AnnotationAssertion
IRI: #database_jcggdb
literal: JCGGDB

AnnotationAssertion
IRI: #database_jcggdb
literal: http://jcggdb.jp/index_en.html

AnnotationAssertion
IRI: #database_jcggdb
literal: Japan Consortium for Glycobiology and Glycotechnology DataBase

AnnotationAssertion
IRI: #database_kegg
literal: KEGG

AnnotationAssertion
IRI: #database_kegg
literal: http://www.genome.jp/kegg/glycan/

AnnotationAssertion
IRI: #database_kegg
literal: Kyoto Encyclopedia of Genes and Genomes

AnnotationAssertion
IRI: #database_monosaccharidedb
literal: MonosaccharideDB

AnnotationAssertion
IRI: #database_monosaccharidedb
literal: http://www.monosaccharidedb.org

AnnotationAssertion
IRI: #database_monosaccharidedb
literal: MonosaccharideDB

AnnotationAssertion
IRI: #database_pdb
literal: PDB

AnnotationAssertion
IRI: #database_pdb
literal: http://www.rcsb.org/pdb/home/home.do

AnnotationAssertion
IRI: #database_pdb
literal: RCSB Protein Data Bank

AnnotationAssertion
IRI: #database_pfcsdb
literal: PFCSDB

AnnotationAssertion
IRI: #database_pfcsdb
literal: http://csdb.glycoscience.ru/plant_fungal/

AnnotationAssertion
IRI: #database_pfcsdb
literal: Plant and Fungal Carbohydrate Structure DataBase

AnnotationAssertion
IRI: #database_pubchem
literal: PubChem

AnnotationAssertion
IRI: #database_pubchem
literal: http://pubchem.ncbi.nlm.nih.gov/

AnnotationAssertion
IRI: #database_pubchem
literal: PubChem

AnnotationAssertion
IRI: #database_smsa
literal: SMSA

AnnotationAssertion
IRI: #database_smsa
literal: http://ws.glyconavi.org/SM/

AnnotationAssertion
IRI: #database_smsa
literal: Small Molecule for Spectral Analysis

AnnotationAssertion
IRI: #database_unicarb_db
literal: UniCarb-DB

AnnotationAssertion
IRI: #database_unicarb_db
literal: http://www.unicarb-db.org

AnnotationAssertion
IRI: #database_unicarb_db
literal: UniCarb-DB

AnnotationAssertion
IRI: #database_unicarbkb
literal: UniCarbKB

AnnotationAssertion
IRI: #database_unicarbkb
literal: http://www.unicarbkb.org

AnnotationAssertion
IRI: #database_unicarbkb
literal: UniCarbKB

AnnotationAssertion
IRI: #degraded_by
literal: Object is a reaction process, which degrades the subject.

AnnotationAssertion
IRI: #elucidated
literal: if this glycan was elucidated (rather than just studied) in this publication

AnnotationAssertion
IRI: #enzymatic_release
literal: Release of glycan by an enzymatic reaction.

AnnotationAssertion
IRI: #enzymatic_release
literal: Enzymatic Release

AnnotationAssertion
IRI: #enzyme
literal: Enzyme that take part in synthesis anddegradation of glycan.

AnnotationAssertion
IRI: #enzyme
literal: Enzyme

AnnotationAssertion
IRI: #erythro
literal: erythro

AnnotationAssertion
IRI: #evidence
literal: An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis.

AnnotationAssertion
IRI: #evidence
literal: Evidence

AnnotationAssertion
IRI: #evidence_IGOT
literal: Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)

AnnotationAssertion
IRI: #evidence_IGOT
literal: Evidence IGOT

AnnotationAssertion
IRI: #evidence_binding
literal: Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results.

AnnotationAssertion
IRI: #evidence_binding
literal: Evidence Binding

AnnotationAssertion
IRI: #evidence_binding_antibody
literal: Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results.

AnnotationAssertion
IRI: #evidence_binding_antibody
literal: Evidence Binding Antibody

AnnotationAssertion
IRI: #evidence_binding_lectin
literal: Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results.

AnnotationAssertion
IRI: #evidence_binding_lectin
literal: Evidence Binding Lectin

AnnotationAssertion
IRI: #evidence_ce
literal: Experiments using capillary electrophoresis to identify and characterize carbohydrate structures.

AnnotationAssertion
IRI: #evidence_ce
literal: Evidence CE

AnnotationAssertion
IRI: #evidence_lc
literal: Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties.

AnnotationAssertion
IRI: #evidence_lc
literal: Evidence LC

AnnotationAssertion
IRI: #evidence_lc_ms
literal: Evidence LC MS

AnnotationAssertion
IRI: #evidence_ms
literal: Experiments using mass spectrometry to identify the carbohydrate structures.

AnnotationAssertion
IRI: #evidence_ms
literal: Evidence MS

AnnotationAssertion
IRI: #evidence_nmr
literal: Experiments using NMR to identify the carbohydrate structure.

AnnotationAssertion
IRI: #evidence_nmr
literal: Evidence NMR

AnnotationAssertion
IRI: #evidence_type
literal: List of evidence types.

AnnotationAssertion
IRI: #evidence_type
literal: Evidence Type

AnnotationAssertion
IRI: #evidence_type_ce
literal: ce

AnnotationAssertion
IRI: #evidence_type_hplc
literal: hplc

AnnotationAssertion
IRI: #evidence_type_lc
literal: lc

AnnotationAssertion
IRI: #evidence_type_lc_ms
literal: lc ms

AnnotationAssertion
IRI: #evidence_type_lc_msms
literal: lc msms

AnnotationAssertion
IRI: #evidence_type_ms
literal: ms

AnnotationAssertion
IRI: #evidence_type_msms
literal: msms

AnnotationAssertion
IRI: #evidence_type_nmr
literal: nmr

AnnotationAssertion
IRI: #from_sample
literal: A brief descripition of the sample analysed. This may be required if taxon, tissue, and disease are not sufficient. An example may include analysis of a sample with no specified background e.g. commerical project.

AnnotationAssertion
IRI: #from_sample
literal: from_sample

AnnotationAssertion
IRI: #furanose
literal: A furanose is a five member ring structure containing four carbon atoms and one oxygen atom.

AnnotationAssertion
IRI: #furanose
literal: furanose

AnnotationAssertion
IRI: #galacto
literal: galacto

AnnotationAssertion
IRI: #gluco
literal: gluco

AnnotationAssertion
IRI: #glutamic_acid
literal: glutamic acid

AnnotationAssertion
IRI: #glutamine
literal: glutamine

AnnotationAssertion
IRI: #glycan_binder
literal: A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc.

AnnotationAssertion
IRI: #glycan_binder
literal: Glycan Binder

AnnotationAssertion
IRI: #glycan_database
literal: A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database.

AnnotationAssertion
IRI: #glycan_database
literal: Glycan Database

AnnotationAssertion
IRI: #glycan_database_category
literal: Instances of this class are the categories for the classification of glycan databases.

AnnotationAssertion
IRI: #glycan_database_category
literal: Glycan Database Category

AnnotationAssertion
IRI: #glycan_epitope
literal: A glycan epitope is a special motif which has a known biological function.

AnnotationAssertion
IRI: #glycan_epitope
literal: Glycan Epitope

AnnotationAssertion
IRI: #glycan_motif
literal: A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning.

AnnotationAssertion
IRI: #glycan_motif
literal: Glycan Motif

AnnotationAssertion
IRI: #glycan_release
literal: A class for process of glycan release, including chemical and enzymatic reaction.

AnnotationAssertion
IRI: #glycan_release
literal: Glycan Release

AnnotationAssertion
IRI: #glycero
literal: glycero

AnnotationAssertion
IRI: #glycine
literal: glycine

AnnotationAssertion
IRI: #glycoconjugate
literal: Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other.

AnnotationAssertion
IRI: #glycoconjugate
literal: Glycoconjugate

AnnotationAssertion
IRI: #glycoconjugate_sequence
literal: Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure.

AnnotationAssertion
IRI: #glycoconjugate_sequence
literal: Glycoconjugate Sequence

AnnotationAssertion
IRI: #glycolipid
literal: Lipid with saccharide(s) attached by glycosidic bond(s).

AnnotationAssertion
IRI: #glycolipid
literal: Glycolipid

AnnotationAssertion
IRI: #glycopeptide
literal: A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated.

AnnotationAssertion
IRI: #glycopeptide
literal: Glycopeptide

AnnotationAssertion
IRI: #glycoprotein
literal: A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated.

AnnotationAssertion
IRI: #glycoprotein
literal: Glycoprotein

AnnotationAssertion
IRI: #glycosequence
literal: Sequence of the glycan in a specified sequence format.

AnnotationAssertion
IRI: #glycosequence
literal: Glycosequence

AnnotationAssertion
IRI: #glycoside
literal: Glycoside

AnnotationAssertion
IRI: #glycosyl_hydrolase_reaction
literal: Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate.

AnnotationAssertion
IRI: #glycosyl_hydrolase_reaction
literal: Glycosyl Hydrolase Reaction

AnnotationAssertion
IRI: #glycosylated_AA
literal: An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein.

AnnotationAssertion
IRI: #glycosylated_AA
literal: Glycosylated Amino Acid

AnnotationAssertion
IRI: #glycosylates
literal: glycosylates

AnnotationAssertion
IRI: #glycosyltransferase_reaction
literal: Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them.

AnnotationAssertion
IRI: #glycosyltransferase_reaction
literal: Glycosyltransferase Reaction

AnnotationAssertion
IRI: #gradient
literal: Gradient

AnnotationAssertion
IRI: #gulo
literal: gulo

AnnotationAssertion
IRI: #has_AA_sequence
literal: Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue.

AnnotationAssertion
IRI: #has_abbreviation
literal: Abbreviation of the database

AnnotationAssertion
IRI: #has_absolute_configuration
literal: Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown.

AnnotationAssertion
IRI: #has_affinity_to
literal: Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder.

AnnotationAssertion
IRI: #has_affinity_value
literal: Binding affinity value for the lectin or antibody.

AnnotationAssertion
IRI: #has_aglycon
literal: This property is used to specify the aglycon portion of a glycoconjugate compound.

AnnotationAssertion
IRI: #has_alias
literal: reference to aliases for the monosaccharide

AnnotationAssertion
IRI: #has_alias_name
literal: Alias name of a monosaccharide.

AnnotationAssertion
IRI: #has_alternative_name
literal: Name of compound. Use if name is not with compliant with Oxford Shorthand format, IUPAC, GlycoCT/WURCS, or Motif/Epitope.

AnnotationAssertion
IRI: #has_anomer
literal: Anomeric state of the basetype.

AnnotationAssertion
IRI: #has_arabinose_unit
literal: Structure has an arabinose unit

AnnotationAssertion
IRI: #has_association
literal: has association

AnnotationAssertion
IRI: #has_attached_glycan
literal: This property is used to specify a glycan portion of a glycoconjugate compound.

AnnotationAssertion
IRI: #has_average_molecular_weight
literal: literal numeric with decimal, calculated from monosaccharide composition with average atomic weight

AnnotationAssertion
IRI: #has_basetype
literal: Object is the basetype of the monosaccharide (subject).

AnnotationAssertion
IRI: #has_basetype_id
literal: Id of the basetype in MonosaccharideDB.

AnnotationAssertion
IRI: #has_basetype_linkage_position
literal: Linkage position at the basetype.

AnnotationAssertion
IRI: #has_cardinality
literal: Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues.

AnnotationAssertion
IRI: #has_cardinality_per_repeat
literal: Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues.

AnnotationAssertion
IRI: #has_category
literal: category of a glycan database

AnnotationAssertion
IRI: #has_ce_electrogram
literal: Glycan annotation with associated CE electrogram evidence

AnnotationAssertion
IRI: #has_ce_peak
literal: Peak description

AnnotationAssertion
IRI: #has_cell_line
literal: Cell line information of the source

AnnotationAssertion
IRI: #has_cell_type
literal: Cell type information of the source

AnnotationAssertion
IRI: #has_charge
literal: Charge state of the MS peak

AnnotationAssertion
IRI: #has_chemical_shift
literal: chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)

AnnotationAssertion
IRI: #has_chemical_shift_max
literal: Maximum value of chemical shift.

AnnotationAssertion
IRI: #has_chemical_shift_min
literal: Minimum value of chemical shift.

AnnotationAssertion
IRI: #has_code
literal: Code for compound. This may be linked with a commerically available compound and its catalogue number or in-house available compound e.g. synthesied standard.

AnnotationAssertion
IRI: #has_component
literal: Object is a component, representing the monosaccharide composition of the subject.

AnnotationAssertion
IRI: #has_compound
literal: has_compound

AnnotationAssertion
IRI: #has_configuration
literal: Instance of class is configuration.

AnnotationAssertion
IRI: #has_configuration
literal: configuration

AnnotationAssertion
IRI: #has_core_modification
literal: reference to another RDF describing a core modification that is present in this basetype

AnnotationAssertion
IRI: #has_core_modification_type
literal: Type of the core modification. Instances of class are core modification types.

AnnotationAssertion
IRI: #has_core_modification_type
literal: has_core_modification_type

AnnotationAssertion
IRI: #has_coupling_constant
literal: values in Hz

AnnotationAssertion
IRI: #has_default_linkage_bondorder
literal: Object is bond order that is number of linkage in default.

AnnotationAssertion
IRI: #has_default_linkage_bondorder2
literal: Object is second bond order that is number of linkage in default.

AnnotationAssertion
IRI: #has_default_linkage_type
literal: Instances of this class are linkage type .

AnnotationAssertion
IRI: #has_default_linkage_type2
literal: Instances of this class are second linkage type.

AnnotationAssertion
IRI: #has_default_linking_position
literal: A position that is number of linkage in default.

AnnotationAssertion
IRI: #has_default_linking_position2
literal: A position that is number of second linkage in default.

AnnotationAssertion
IRI: #has_destination_organism
literal: glycan of which organism authors wanted to synthesize or model

AnnotationAssertion
IRI: #has_diameter
literal: diameter of the column in micro meter

AnnotationAssertion
IRI: #has_disease
literal: MESH reference for disease

AnnotationAssertion
IRI: #has_enzyme
literal: Object is an enzyme, which performs the reaction.

AnnotationAssertion
IRI: #has_epitope
literal: The object is a structural motif with biological relevance; subproperty of has_motif.

AnnotationAssertion
IRI: #has_evidence
literal: evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data.

AnnotationAssertion
IRI: #has_exoglycosidase_chromatogram
literal: Relation to exoglycosidase treated sample

AnnotationAssertion
IRI: #has_extended_stereocode
literal: Extended stereocode of the basetype

AnnotationAssertion
IRI: #has_external_substituent
literal: Reference to a :substituent.

AnnotationAssertion
IRI: #has_first_configuration
literal: Reference to another RDF resource with URI describing the first monosaccharide configuration

AnnotationAssertion
IRI: #has_fluid
literal: either tissue or fluid

AnnotationAssertion
IRI: #has_fragment
literal: sequence as peak annotation

AnnotationAssertion
IRI: #has_glucose_unit
literal: Structure has an glucose unit

AnnotationAssertion
IRI: #has_glycan
literal: The glycan object referenced by this subject.

AnnotationAssertion
IRI: #has_glycan_format
literal: This object property links Glycan class to glycanFormat class

AnnotationAssertion
IRI: #has_glycoconjugate_sequence
literal: Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate.

AnnotationAssertion
IRI: #has_glycosequence
literal: glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format.

AnnotationAssertion
IRI: #has_glycosylated_AA
literal: This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide.

AnnotationAssertion
IRI: #has_image
literal: Object is a URI to an image instance describing a graphical representation of the glycan.

AnnotationAssertion
IRI: #has_intensity
literal: intensity value of the MS peak

AnnotationAssertion
IRI: #has_keyword
literal: Keyword for the publication. Object is a URI in MeSH.

AnnotationAssertion
IRI: #has_lc_chromatogram_peak
literal: Peak description

AnnotationAssertion
IRI: #has_length
literal: Length of the column in milli meter

AnnotationAssertion
IRI: #has_life_stage
literal: Life stage information of the source.

AnnotationAssertion
IRI: #has_linkage_path
literal: path from the reducing end or from the rightmost residue in repeat

AnnotationAssertion
IRI: #has_linkage_position
literal: Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position.

AnnotationAssertion
IRI: #has_linkage_type
literal: GlycoCT linkage type of the monosaccharide to the substituent

AnnotationAssertion
IRI: #has_manufacturer
literal: Manufacturer of the device used in the experiment.

AnnotationAssertion
IRI: #has_material
literal: Column packing material

AnnotationAssertion
IRI: #has_method
literal: experimental procedures described in the article

AnnotationAssertion
IRI: #has_model
literal: Model of the device used in the experiment.

AnnotationAssertion
IRI: #has_modification_position
literal: Position of the modification at the monosaccharide.

AnnotationAssertion
IRI: #has_modification_position2
literal: Second position of the modification at the monosaccharide (eg. for double bounds)

AnnotationAssertion
IRI: #has_monoisotopic_molecular_weight
literal: Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope.

AnnotationAssertion
IRI: #has_monosaccharide
literal: URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB).

AnnotationAssertion
IRI: #has_monosaccharide_notation_scheme
literal: One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes

AnnotationAssertion
IRI: #has_motif
literal: The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ...

AnnotationAssertion
IRI: #has_msdb_id
literal: Id of the monosaccharide in MonosaccharideDB.

AnnotationAssertion
IRI: #has_multiplicity
literal: single-character literal (S,M,D,T ,Q) or combination

AnnotationAssertion
IRI: #has_mz
literal: MZ value of the MS peak

AnnotationAssertion
IRI: #has_nucleus
literal: Nucleus

AnnotationAssertion
IRI: #has_organ
literal: Organ of the source.

AnnotationAssertion
IRI: #has_particle_size
literal: Size of the particle in micro meter.

AnnotationAssertion
IRI: #has_peak_area
literal: Integrated peak area.

AnnotationAssertion
IRI: #has_phase_description
literal: Description / short hand of the phase e.g. HILIC, PGC

AnnotationAssertion
IRI: #has_phase_description
literal: has_phase_description

AnnotationAssertion
IRI: #has_polymerization_degree
literal: Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count.

AnnotationAssertion
IRI: #has_precursor_peak
literal: URI of the precursor peak of a MS^n spectra.

AnnotationAssertion
IRI: #has_product
literal: Object is generated by the reaction.

AnnotationAssertion
IRI: #has_protein_name
literal: Protein name in accordance with UniProt accession with information available.

AnnotationAssertion
IRI: #has_reference
literal: Reference between :compound, :citation, :evidence, :source and :referenced_compound.

AnnotationAssertion
IRI: #has_relative_configuration
literal: IUPAC monosaccharide basetype information. Without absolute configuration D or L

AnnotationAssertion
IRI: #has_repeat_attribute
literal: (min, max, exact, average, unknown) part of repeating unit

AnnotationAssertion
IRI: #has_repeat_count
literal: value of repeat_attribute in resource, if known

AnnotationAssertion
IRI: #has_residue
literal: Monosaccharide annotation of the subspectrum.

AnnotationAssertion
IRI: #has_resource_entry
literal: Assigns a resource entry to a compound.

AnnotationAssertion
IRI: #has_retention_time
literal: Retention time of the molecule in the experiment in minutes.

AnnotationAssertion
IRI: #has_ring_end
literal: position of last carbon involved in ring closure

AnnotationAssertion
IRI: #has_ring_start
literal: position of first carbon involved in ring closure

AnnotationAssertion
IRI: #has_ring_type
literal: Assigns the ring type to a basetype.

AnnotationAssertion
IRI: #has_sample_type
literal: Sample type of the source.

AnnotationAssertion
IRI: #has_second_configuration
literal: Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters

AnnotationAssertion
IRI: #has_sequence
literal: Sequence of the Glycan

AnnotationAssertion
IRI: #has_signal
literal: Resource to a :signal

AnnotationAssertion
IRI: #has_size
literal: number of backbone carbon atoms

AnnotationAssertion
IRI: #has_stereocode
literal: Stereocode describing the backbone stereochemistry

AnnotationAssertion
IRI: #has_strain
literal: Object is bacterial strain.

AnnotationAssertion
IRI: #has_structure_location
literal: The location of the referenced compound in a publication (e.g. Figure 1).

AnnotationAssertion
IRI: #has_substituent_linkage
literal: linkage of the substituent

AnnotationAssertion
IRI: #has_substituent_linkage_position
literal: Linkage position at the substituent.

AnnotationAssertion
IRI: #has_substituent_linkage_position2
literal: Second linkage position at the substituent.

AnnotationAssertion
IRI: #has_substituent_type
literal: linkage type of the substituent

AnnotationAssertion
IRI: #has_substitution
literal: The substituent is linked to the basetype in this monosaccharide.

AnnotationAssertion
IRI: #has_substitution_name
literal: Name of substitution.

AnnotationAssertion
IRI: #has_substrate
literal: Object is consumed by the reaction.

AnnotationAssertion
IRI: #has_symbol_format
literal: URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)

AnnotationAssertion
IRI: #has_synthesis_type
literal: Allows to specify the synthesis type used to generated the glycan.

AnnotationAssertion
IRI: #has_taxon
literal: Species information of the source.

AnnotationAssertion
IRI: #has_third_configuration
literal: Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters

AnnotationAssertion
IRI: #has_tissue
literal: either tissue or fluid

AnnotationAssertion
IRI: #has_unassigned_signal
literal: Link to an unassigned signal which is just a chemical shift.

AnnotationAssertion
IRI: #has_uniprot_accession
literal: When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein.

AnnotationAssertion
IRI: #has_uoxf
literal: Glycan sequence in a text format.

AnnotationAssertion
IRI: #has_uoxf
literal: has_uoxf

AnnotationAssertion
IRI: #has_url_template
literal: xsd:string such as http://foo.bar.com/someglycan?id=%s

AnnotationAssertion
IRI: #has_valence
literal: Object is a valence of substituent.

AnnotationAssertion
IRI: #has_version
literal: Version of the software used

AnnotationAssertion
IRI: #histidine
literal: histidine

AnnotationAssertion
IRI: #hosted_by
literal: Reference to another biological source representing the host organism.

AnnotationAssertion
IRI: #hybrid_with
literal: An offspring of two different taxons.

AnnotationAssertion
IRI: #ido
literal: ido

AnnotationAssertion
IRI: #image
literal: Image class for representing glycan images.

AnnotationAssertion
IRI: #image
literal: Image

AnnotationAssertion
IRI: #in_carbohydrate_format
literal: carbohydrate sequence format of the sequence given in the glycosequence instance

AnnotationAssertion
IRI: #in_glycan_database
literal: Glycan is present in the glycan database specified by the URI.

AnnotationAssertion
IRI: #is_ambiguous
literal: Boolean indicating whether the subject is a fully defined structure including all linkage information, or not.

AnnotationAssertion
IRI: #is_fragment
literal: If the synthesised or modeled molecule is just a fragment or the complete target molecule

AnnotationAssertion
IRI: #is_from_profile
literal: A profile can have many peaks and saccharides. It represents a single LC run (parent or digest).

AnnotationAssertion
IRI: #is_from_report
literal: Reference to a report (internal, contract, method development or similar) with no associated publication.

AnnotationAssertion
IRI: #is_from_source
literal: Source annotation for a referenced compound.

AnnotationAssertion
IRI: #is_fuzzy
literal: If a substituent is fuzzy.

AnnotationAssertion
IRI: #is_glycosylated_on
literal: is glycosylated on

AnnotationAssertion
IRI: #is_linkable
literal: If a substituent is linkable.

AnnotationAssertion
IRI: #is_missing
literal: If true unassigned signal. NO if a signal can not exist, rather than its unknown.

AnnotationAssertion
IRI: #is_primary_name
literal: indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)

AnnotationAssertion
IRI: #is_trivial_name
literal: Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)

AnnotationAssertion
IRI: #isoleucine
literal: isoleucine

AnnotationAssertion
IRI: #lc_chromatogram
literal: LC Chromatogram

AnnotationAssertion
IRI: #lc_column
literal: LC Column

AnnotationAssertion
IRI: #lc_digest_chromatogram
literal: LC Digest Chromatogram

AnnotationAssertion
IRI: #lc_peak
literal: LC Peak

AnnotationAssertion
IRI: #lc_property
literal: Class that contains Liquid Chromatography properties such as gradient, Lc column.

AnnotationAssertion
IRI: #lc_property
literal: LC Property

AnnotationAssertion
IRI: #lectin
literal: A class of protein that binds to glycans but is neither an antibody nor an enzyme.

AnnotationAssertion
IRI: #lectin
literal: Lectin

AnnotationAssertion
IRI: #leucine
literal: leucine

AnnotationAssertion
IRI: #linkage_type
literal: List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages.

AnnotationAssertion
IRI: #linkage_type
literal: Linkage Type

AnnotationAssertion
IRI: #linkage_type_deoxy
literal: The substituent is linked directly to the basetype backbone by replacing the OH group.

AnnotationAssertion
IRI: #linkage_type_deoxy
literal: deoxy

AnnotationAssertion
IRI: #linkage_type_h_at_oh
literal: A standard O-linked substituent, i.e. the substituent replaces the hydrogen of an OH group.

AnnotationAssertion
IRI: #linkage_type_h_at_oh
literal: h at oh

AnnotationAssertion
IRI: #linkage_type_h_loss
literal: The substituent is linked directly to the basetype backbone by replacing the hydrogen atom.

AnnotationAssertion
IRI: #linkage_type_h_loss
literal: h loss

AnnotationAssertion
IRI: #linkage_type_r_config
literal: The substituent is linked directly to the basetype backbone by replacing a hydrogen atom at a terminal position, which would be non-chiral without the substituent, resulting in an R-configuration of the carbon.

AnnotationAssertion
IRI: #linkage_type_r_config
literal: r config

AnnotationAssertion
IRI: #linkage_type_s_config
literal: Same as R_CONFIG, but resulting in an S-Configuration of the carbon.

AnnotationAssertion
IRI: #linkage_type_s_config
literal: s config

AnnotationAssertion
IRI: #lipid
literal: Lipid

AnnotationAssertion
IRI: #lysine
literal: lysine

AnnotationAssertion
IRI: #lyxo
literal: lyxo

AnnotationAssertion
IRI: #manno
literal: manno

AnnotationAssertion
IRI: #mass_spectrometry_device
literal: Mass Spectrometry Device

AnnotationAssertion
IRI: #mass_spectrum
literal: Mass Spectrum

AnnotationAssertion
IRI: #methionine
literal: methionine

AnnotationAssertion
IRI: #modification_type
literal: Modification type is represented due to biological process, typically N-linked or O-linked.

AnnotationAssertion
IRI: #monosaccharide
literal: Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI: http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0

AnnotationAssertion
IRI: #monosaccharide
literal: Monosaccharide

AnnotationAssertion
IRI: #monosaccharide_alias
literal: Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme.

AnnotationAssertion
IRI: #monosaccharide_alias
literal: Monosaccharide Alias

AnnotationAssertion
IRI: #monosaccharide_notation_scheme
literal: List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme
literal: Monosaccharide Notation Scheme

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_amber_glycam
literal: Two-letter residue names used within the AMBER GLYCAM forcefield. For more information, see Carbohydrate Naming Convention in Glycam. Note (1): Monosaccharide alias names in GLYCAM notation also encode linkage positions (in the first character of a three-letter-code residue name). These depend on the context of a residue within an oligosaccharide and thus are no monosaccharide properties. GLYCAM names stored in MonosaccharideDB refer to a terminal residue. The first character might have to be adjusted according to the specific context of a residue, i.e. in case other residues linked are to the given one. Note (2): The GLYCAM notation is not yet supported by the notation parsing routines, i.e. GLYCAM alias names can be created, but not be read yet.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_amber_glycam
literal: amber glycam

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_bcsdb
literal: The notation used by the Russian BCSDB. For more information on this notation, see the description on the BCSDB homepage.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_bcsdb
literal: bcsdb

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_carbbank
literal: The CarbBank notation is based on the IUPAC extended notation. It is used by the Complex Carbohydrate Structure Database (CCSD), which is better known by the name of its query software "carbbank". CarbBank style notation forms the basis of several other notations, such as the Glycosciences.de scheme.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_carbbank
literal: carbbank

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_cfg
literal: The LinearCode notation used by the US Consortium for Functional Glycomics (CFG).

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_cfg
literal: cfg

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_glycoct
literal: The nomenclature that is used by EUROCarbDB. For more information see www.eurocarbdb.org/recommendations/encoding/.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_glycoct
literal: glycoct

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_glycosciences_de
literal: The Notation used in the Glycosciences.de web portal. It is based on the CarbBank notation.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_glycosciences_de
literal: glycosciences de

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_monosaccharidedb
literal: MonosaccharideDB's internal notation format. Basetype and substituent names are the same as in GlycoCT, with the exception that 'anhydro' and 'lactone' modifications are included in the basetype here, while they are defined as substituents in GlycoCT. As most glycobiologist and also most carbohydrate databases consider a monosaccharide that contains substituents as one residue, they are defined in this way in MonosaccharideDB as well.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_monosaccharidedb
literal: monosaccharidedb

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_pdb
literal: The 3-letter residue names as used by the Protein Data Bank (PDB). Unlike most of the other notations, these names cannot be generated automatically by conversion routines but have to be assigned manually by the database administrators. Some PDB residue names that encode carbohydrate residues define disaccharides or oligosaccharides. These are not implemented in MonosaccharideDB, as the scope of this database is on monosaccharide residues.

AnnotationAssertion
IRI: #monosaccharide_notation_scheme_pdb
literal: pdb

AnnotationAssertion
IRI: #monosaccharide_property
literal: Class that contains all monosaccharides properties such as anomer, basetype etc.

AnnotationAssertion
IRI: #monosaccharide_property
literal: Monosaccharide Property

AnnotationAssertion
IRI: #motif
literal: Motif

AnnotationAssertion
IRI: #ms_annotation
literal: MS Annotation

AnnotationAssertion
IRI: #ms_fragment_type
literal: MS Fragment Type

AnnotationAssertion
IRI: #ms_fragment_type_a
literal: A

AnnotationAssertion
IRI: #ms_fragment_type_b
literal: B

AnnotationAssertion
IRI: #ms_fragment_type_c
literal: C

AnnotationAssertion
IRI: #ms_fragment_type_x
literal: X

AnnotationAssertion
IRI: #ms_fragment_type_y
literal: Y

AnnotationAssertion
IRI: #ms_fragment_type_z
literal: Z

AnnotationAssertion
IRI: #ms_peak
literal: Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state.

AnnotationAssertion
IRI: #ms_peak
literal: MS Peak

AnnotationAssertion
IRI: #ms_property
literal: Class that contains Mass Spectrometry properties such as adduct, adduct ion etc.

AnnotationAssertion
IRI: #ms_property
literal: MS Property

AnnotationAssertion
IRI: #msn_spectrum
literal: Msn Spectrum

AnnotationAssertion
IRI: #neutral_loss
literal: Neutral Loss

AnnotationAssertion
IRI: #nmr_property
literal: Parentclass for all classes used in NMR evidences.

AnnotationAssertion
IRI: #nmr_property
literal: NMR Property

AnnotationAssertion
IRI: #of_carbon_number
literal: carbon atom number

AnnotationAssertion
IRI: #open
literal: Open chain sugar that does not form a ring.

AnnotationAssertion
IRI: #open
literal: open

AnnotationAssertion
IRI: #peptide
literal: Part of a protein amino acid sequence generated by digestion for analysis.

AnnotationAssertion
IRI: #peptide
literal: Peptide

AnnotationAssertion
IRI: #phenylalanine
literal: phenylalanine

AnnotationAssertion
IRI: #polymerization_degree
literal: A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide.

AnnotationAssertion
IRI: #polymerization_degree
literal: Polymerization Degree

AnnotationAssertion
IRI: #polysaccharide
literal: Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies.

AnnotationAssertion
IRI: #polysaccharide
literal: Polysaccharide

AnnotationAssertion
IRI: #profile_spectrum
literal: Profile Spectrum

AnnotationAssertion
IRI: #proline
literal: proline

AnnotationAssertion
IRI: #protein
literal: Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases.

AnnotationAssertion
IRI: #protein
literal: Protein

AnnotationAssertion
IRI: #published_in
literal: Reference information for the subject.

AnnotationAssertion
IRI: #pyranose
literal: A Pyranose is any cyclic isomer that has a five carbons and one oxygen in a ring of six atoms.

AnnotationAssertion
IRI: #pyranose
literal: pyranose

AnnotationAssertion
IRI: #ratio
literal: Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)

AnnotationAssertion
IRI: #reaction
literal: Class for reaction process to create or degrade glycans or glycoconjugates.

AnnotationAssertion
IRI: #reaction
literal: Reaction

AnnotationAssertion
IRI: #reductive_beta_elimination
literal: Beta elimination that is used reducing a get for stabilize glycan.

AnnotationAssertion
IRI: #reductive_beta_elimination
literal: reductive beta elimination

AnnotationAssertion
IRI: #referenced_compound
literal: Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication.

AnnotationAssertion
IRI: #referenced_compound
literal: Referenced Compound

AnnotationAssertion
IRI: #relative_configuration
literal: List of relative monosaccharide configurations according to IUPAC.

AnnotationAssertion
IRI: #relative_configuration
literal: Relative Configuration

AnnotationAssertion
IRI: #repeat_attribute
literal: List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown.

AnnotationAssertion
IRI: #repeat_attribute
literal: Repeat Attribute

AnnotationAssertion
IRI: #repeat_attribute_average
literal: average

AnnotationAssertion
IRI: #repeat_attribute_exact
literal: exact

AnnotationAssertion
IRI: #repeat_attribute_max
literal: max

AnnotationAssertion
IRI: #repeat_attribute_min
literal: min

AnnotationAssertion
IRI: #repeat_attribute_unknown
literal: unknown

AnnotationAssertion
IRI: #resource_entry
literal: A resource entry describes an entry about the glycan in another database.

AnnotationAssertion
IRI: #resource_entry
literal: Resource Entry

AnnotationAssertion
IRI: #ribo
literal: ribo

AnnotationAssertion
IRI: #ring_type
literal: Ringtype of a basetype.

AnnotationAssertion
IRI: #ring_type
literal: Ring Type

AnnotationAssertion
IRI: #ring_type_unknown
literal: A monosaccharide whose ring type is unknown.

AnnotationAssertion
IRI: #ring_type_unknown
literal: unknown

AnnotationAssertion
IRI: #role
literal: Classification hierarchy for molecular functions.

AnnotationAssertion
IRI: #role
literal: Role

AnnotationAssertion
IRI: #sample_preparation
literal: A process which is the syntesis or preparation of sample for glycan analysis.

AnnotationAssertion
IRI: #sample_preparation
literal: Sample Preparation

AnnotationAssertion
IRI: #selenocysteine
literal: selenocysteine

AnnotationAssertion
IRI: #sequence
literal: A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides.

AnnotationAssertion
IRI: #sequence
literal: Sequence

AnnotationAssertion
IRI: #serine
literal: serine

AnnotationAssertion
IRI: #signal
literal: A signal is a NMR data point.

AnnotationAssertion
IRI: #signal
literal: Signal

AnnotationAssertion
IRI: #software
literal: Software that has been utilized for the glycan. For example software used to model the glycan.

AnnotationAssertion
IRI: #software
literal: Software

AnnotationAssertion
IRI: #solvent
literal: A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution.

AnnotationAssertion
IRI: #solvent
literal: Solvent

AnnotationAssertion
IRI: #solvent_part
literal: A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created.

AnnotationAssertion
IRI: #solvent_part
literal: Solvent Part

AnnotationAssertion
IRI: #source
literal: Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan.

AnnotationAssertion
IRI: #source
literal: Source

AnnotationAssertion
IRI: #source_modeled
literal: Class for modeled source. Instance contain information about the software used for modeling and the target organism.

AnnotationAssertion
IRI: #source_modeled
literal: Source Modeled

AnnotationAssertion
IRI: #source_natural
literal: Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on.

AnnotationAssertion
IRI: #source_natural
literal: Source Natural

AnnotationAssertion
IRI: #source_sample
literal: Class for source from sample. Instance contain sample type.

AnnotationAssertion
IRI: #source_sample
literal: Source Sample

AnnotationAssertion
IRI: #source_synthetic
literal: Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic.

AnnotationAssertion
IRI: #source_synthetic
literal: Source Synthetic

AnnotationAssertion
IRI: #subspectrum
literal: Subspectrum of NMR data. It contains the annotated signals.

AnnotationAssertion
IRI: #subspectrum
literal: Subspectrum

AnnotationAssertion
IRI: #substituent
literal: Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf

AnnotationAssertion
IRI: #substituent
literal: Substituent

AnnotationAssertion
IRI: #substituent_linkage
literal: Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type.

AnnotationAssertion
IRI: #substituent_linkage
literal: Substituent Linkage

AnnotationAssertion
IRI: #substituent_type
literal: List of substituent types possible on monosaccharides.

AnnotationAssertion
IRI: #substituent_type
literal: Substituent Type

AnnotationAssertion
IRI: #substituent_type_acetyl
literal: COCH3

AnnotationAssertion
IRI: #substituent_type_acetyl
literal: acetyl

AnnotationAssertion
IRI: #substituent_type_amino
literal: NH2

AnnotationAssertion
IRI: #substituent_type_amino
literal: amino

AnnotationAssertion
IRI: #substituent_type_bromo
literal: Br

AnnotationAssertion
IRI: #substituent_type_bromo
literal: bromo

AnnotationAssertion
IRI: #substituent_type_chloro
literal: Cl

AnnotationAssertion
IRI: #substituent_type_chloro
literal: chloro

AnnotationAssertion
IRI: #substituent_type_ethanolamine
literal: NHCH2CH2OH

AnnotationAssertion
IRI: #substituent_type_ethanolamine
literal: ethanolamine

AnnotationAssertion
IRI: #substituent_type_ethyl
literal: CH2CH3

AnnotationAssertion
IRI: #substituent_type_ethyl
literal: ethyl

AnnotationAssertion
IRI: #substituent_type_fluoro
literal: F

AnnotationAssertion
IRI: #substituent_type_fluoro
literal: fluoro

AnnotationAssertion
IRI: #substituent_type_formyl
literal: CHO

AnnotationAssertion
IRI: #substituent_type_formyl
literal: formyl

AnnotationAssertion
IRI: #substituent_type_glycolyl
literal: COCH2OH

AnnotationAssertion
IRI: #substituent_type_glycolyl
literal: glycolyl

AnnotationAssertion
IRI: #substituent_type_hydroxymethyl
literal: CH2OH

AnnotationAssertion
IRI: #substituent_type_hydroxymethyl
literal: hydroxymethyl

AnnotationAssertion
IRI: #substituent_type_imino
literal: NH

AnnotationAssertion
IRI: #substituent_type_imino
literal: imino

AnnotationAssertion
IRI: #substituent_type_iodo
literal: I

AnnotationAssertion
IRI: #substituent_type_iodo
literal: iodo

AnnotationAssertion
IRI: #substituent_type_methyl
literal: CH3

AnnotationAssertion
IRI: #substituent_type_methyl
literal: methyl

AnnotationAssertion
IRI: #substituent_type_n_acetyl
literal: NHCOCH3

AnnotationAssertion
IRI: #substituent_type_n_acetyl
literal: n acetyl

AnnotationAssertion
IRI: #substituent_type_n_alanine
literal: NHCOCHNH2CH3

AnnotationAssertion
IRI: #substituent_type_n_alanine
literal: n alanine

AnnotationAssertion
IRI: #substituent_type_n_dimethyl
literal: N(CH3)2

AnnotationAssertion
IRI: #substituent_type_n_dimethyl
literal: n dimethyl

AnnotationAssertion
IRI: #substituent_type_n_ethyl
literal: NHCH2CH3

AnnotationAssertion
IRI: #substituent_type_n_ethyl
literal: n ethyl

AnnotationAssertion
IRI: #substituent_type_n_formyl
literal: NHCHO

AnnotationAssertion
IRI: #substituent_type_n_formyl
literal: n formyl

AnnotationAssertion
IRI: #substituent_type_n_glycolyl
literal: NCOCH2OH

AnnotationAssertion
IRI: #substituent_type_n_glycolyl
literal: n glycolyl

AnnotationAssertion
IRI: #substituent_type_n_methyl
literal: NHCH3

AnnotationAssertion
IRI: #substituent_type_n_methyl
literal: n methyl

AnnotationAssertion
IRI: #substituent_type_n_succinate
literal: NCOCH2CH2COOH

AnnotationAssertion
IRI: #substituent_type_n_succinate
literal: n succinate

AnnotationAssertion
IRI: #substituent_type_n_sulfate
literal: NHSO3H

AnnotationAssertion
IRI: #substituent_type_n_sulfate
literal: n sulfate

AnnotationAssertion
IRI: #substituent_type_n_trifluoroacetyl
literal: NHCOCF3

AnnotationAssertion
IRI: #substituent_type_n_trifluoroacetyl
literal: n trifluoroacetyl

AnnotationAssertion
IRI: #substituent_type_n_trimethyl
literal: N(CH3)3

AnnotationAssertion
IRI: #substituent_type_n_trimethyl
literal: n trimethyl

AnnotationAssertion
IRI: #substituent_type_nitrat
literal: NO2

AnnotationAssertion
IRI: #substituent_type_nitrat
literal: nitrat

AnnotationAssertion
IRI: #substituent_type_phosphate
literal: PO3H2

AnnotationAssertion
IRI: #substituent_type_phosphate
literal: phosphate

AnnotationAssertion
IRI: #substituent_type_r_lactate
literal: CH3CHCOOH

AnnotationAssertion
IRI: #substituent_type_r_lactate
literal: r lactate

AnnotationAssertion
IRI: #substituent_type_r_pyruvate
literal: CH2CCOOH

AnnotationAssertion
IRI: #substituent_type_r_pyruvate
literal: r pyruvate

AnnotationAssertion
IRI: #substituent_type_s_lactate
literal: CH3CHCOOH

AnnotationAssertion
IRI: #substituent_type_s_lactate
literal: s lactate

AnnotationAssertion
IRI: #substituent_type_s_methyl
literal: SCH3

AnnotationAssertion
IRI: #substituent_type_s_methyl
literal: s methyl

AnnotationAssertion
IRI: #substituent_type_s_pyruvate
literal: CH2CCOOH

AnnotationAssertion
IRI: #substituent_type_s_pyruvate
literal: s pyruvate

AnnotationAssertion
IRI: #substituent_type_seleno
literal: SeH

AnnotationAssertion
IRI: #substituent_type_seleno
literal: seleno

AnnotationAssertion
IRI: #substituent_type_sulfate
literal: SO3H

AnnotationAssertion
IRI: #substituent_type_sulfate
literal: sulfate

AnnotationAssertion
IRI: #substituent_type_telluro
literal: TeH

AnnotationAssertion
IRI: #substituent_type_telluro
literal: telluro

AnnotationAssertion
IRI: #substituent_type_thio
literal: SH

AnnotationAssertion
IRI: #substituent_type_thio
literal: thio

AnnotationAssertion
IRI: #substituent_type_trifluoroacetyl
literal: COCF3

AnnotationAssertion
IRI: #substituent_type_trifluoroacetyl
literal: trifluoroacetyl

AnnotationAssertion
IRI: #substituent_type_x_lactate
literal: CH3CHCOOH

AnnotationAssertion
IRI: #substituent_type_x_lactate
literal: x lactate

AnnotationAssertion
IRI: #substituent_type_x_pyruvate
literal: CH2CCOOH

AnnotationAssertion
IRI: #substituent_type_x_pyruvate
literal: x pyruvate

AnnotationAssertion
IRI: #sulfotransferase_reaction
literal: Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them.

AnnotationAssertion
IRI: #sulfotransferase_reaction
literal: Sulfotransferase Reaction

AnnotationAssertion
IRI: #symbol_format
literal: Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF.

AnnotationAssertion
IRI: #symbol_format
literal: Symbol Format

AnnotationAssertion
IRI: #symbol_format_cfg
literal: A symbol is Consortium for Functional Glycomics (CFG) notation.

AnnotationAssertion
IRI: #symbol_format_cfg
literal: cfg

AnnotationAssertion
IRI: #symbol_format_cfg_bw
literal: CFG symbol that is displaied black and white notation.

AnnotationAssertion
IRI: #symbol_format_cfg_bw
literal: cfg bw

AnnotationAssertion
IRI: #symbol_format_text
literal: A glycan structure is displayed by text-only form.

AnnotationAssertion
IRI: #symbol_format_text
literal: text

AnnotationAssertion
IRI: #symbol_format_uoxf
literal: A symbol is Oxford (UOXF) notations.

AnnotationAssertion
IRI: #symbol_format_uoxf
literal: uoxf

AnnotationAssertion
IRI: #symbol_format_uoxf_bw
literal: UOXF symbol that is displayed black and white notation.

AnnotationAssertion
IRI: #symbol_format_uoxf_bw
literal: uoxf bw

AnnotationAssertion
IRI: #synthesized_by
literal: Object is a reaction process, which synthesizes the subject.

AnnotationAssertion
IRI: #synthetic_type
literal: Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis.

AnnotationAssertion
IRI: #synthetic_type
literal: Synthetic Type

AnnotationAssertion
IRI: #synthetic_type_chemical
literal: Chemical synthesis that various protecting group manipulations used in the context of glycan synthesis.

AnnotationAssertion
IRI: #synthetic_type_chemical
literal: chemical

AnnotationAssertion
IRI: #synthetic_type_chemoenzymatic
literal: Relying on a hybrid of chemical and enzymatic steps that typically begins with chemical synthesis and ends with enzymatic extension.

AnnotationAssertion
IRI: #synthetic_type_chemoenzymatic
literal: chemoenzymatic

AnnotationAssertion
IRI: #synthetic_type_enzymatic
literal: Employing glycosyltransferases and glycosidases in a synthetic schema.

AnnotationAssertion
IRI: #synthetic_type_enzymatic
literal: enzymatic

AnnotationAssertion
IRI: #talo
literal: talo

AnnotationAssertion
IRI: #threo
literal: threo

AnnotationAssertion
IRI: #threonine
literal: threonine

AnnotationAssertion
IRI: #trifulfonic_acid
literal: Glycan labelled with 9-aminopyrene-1,3,6-trifulfonic acid

AnnotationAssertion
IRI: #trifulfonic_acid
literal: 9-aminopyrene-1,3,6-trifulfonic acid

AnnotationAssertion
IRI: #trisulfonic_acid
literal: Glycan labelled with 8-aminonaphthalene-1,3,6-trisulfonic acid

AnnotationAssertion
IRI: #trisulfonic_acid
literal: 8-aminonaphthalene-1,3,6-trisulfonic acid

AnnotationAssertion
IRI: #tryptophan
literal: tryptophan

AnnotationAssertion
IRI: #tyrosine
literal: tyrosine

AnnotationAssertion
IRI: #used_amount_mg
literal: sample weight.

AnnotationAssertion
IRI: #used_buffer
literal: Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline.

AnnotationAssertion
IRI: #used_column_temperature
literal: Column temperature in C.

AnnotationAssertion
IRI: #used_concentration
literal: sample concentration.

AnnotationAssertion
IRI: #used_frequency
literal: frequency of NMR spectrometer.

AnnotationAssertion
IRI: #used_lc_flow_rate
literal: Flow rate refers to the flow of mobile phase through the column and is measured in ml/min.

AnnotationAssertion
IRI: #used_lc_gradient
literal: Solvent gradient explained by change in composition with respect to time.

AnnotationAssertion
IRI: #used_lc_run_time
literal: Runtime of the LC

AnnotationAssertion
IRI: #used_ph
literal: pH of solution

AnnotationAssertion
IRI: #used_reference_standard
literal: reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy.

AnnotationAssertion
IRI: #used_software
literal: Software used to model the molecule.

AnnotationAssertion
IRI: #used_solvent
literal: The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent.

AnnotationAssertion
IRI: #used_temperature
literal: value or range in K (literal)

AnnotationAssertion
IRI: #valine
literal: valine

AnnotationAssertion
IRI: #xylo
literal: xylo

AnnotationAssertion
abbreviated IRI: psi:MS_1000008
literal: PSI: The method by which gas phase ions are generated from the sample.

AnnotationAssertion
abbreviated IRI: psi:MS_1000008
literal: Ionization Type

AnnotationAssertion
abbreviated IRI: psi:MS_1000031
literal: PSI: Instrument model name not including the vendor's name.

AnnotationAssertion
abbreviated IRI: psi:MS_1000031
literal: Instrument Model

AnnotationAssertion
abbreviated IRI: psi:MS_1000443
literal: PSI: Mass analyzer separates the ions according to their mass-to-charge ratio.

AnnotationAssertion
abbreviated IRI: psi:MS_1000443
literal: Mass Analyzer Type

AnnotationAssertion
abbreviated IRI: dcterms:issued
literal: Publication year

AnnotationAssertion
abbreviated IRI: uniprot:Glycosylation_Annotation
literal: Uniprot term for Glycosylation type (e.g. N-glycosylation)

AnnotationAssertion
abbreviated IRI: uniprot:Glycosylation_Annotation
literal: Glycosylation Annotation

AnnotationAssertion
abbreviated IRI: uniprot:Protein
literal: Uniprot protein class.

AnnotationAssertion
abbreviated IRI: uniprot:Protein
literal: Protein

AnnotationAssertion
abbreviated IRI: uniprot:Taxon
literal: Uniprot taxon class.

AnnotationAssertion
abbreviated IRI: uniprot:Taxon
literal: Taxon

AnnotationAssertion
abbreviated IRI: foaf:Image
literal: Image class.

AnnotationAssertion
abbreviated IRI: foaf:Image
literal: Image