Class that contains Capillary Electrophoresis properties.
Instances of this class are the carbohydrate sequence formats.
Initial class name is capitalized. "glycan:Citation"
Citation
Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen.
Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water.
Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a HPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.
Reverse Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites. Retention times are normally compared with an arabinose ladder and assigned arabinose units (AU).
Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a UPLC instrument. Retention times are compared to a dextran ladder and represented as GU values.
This class depicts a GlyCAM format of glycans
This class depicts a GlycoCT format of glycans
Glycoprotein
Initial class name is capitalized. "glycan:Glycoprotein
A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage.
Glycosylation Site
This class depicts a IUPAC condensed format of glycans
This class depicts a IUPAC Extended format of glycans.
This class depicts a Linear Code format of glycans
A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579).
A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration.
Initial class name is capitalized. "glycan:Referenced_compound"
Referenced Compound
Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans.
Saccharide
Initial class name is capitalized. "glycan:Source_natural"
Source Natural
This class depicts a WURCS format of glycans
Glycan(s) treated with alpha1-2,4,6 Fucosidase that catalyses the hydrolysis of α1-2, α1-4, and α1-6 linked L-fucopyranosyl residues
Glycan(s) treated with alpha1-3,4 Fucosidase that catalyses the hydrolysis of α1-3 and α1-4 linked fucose residues
Glycan(s) treated with alpha1-3,6 Galactosidase that catalyses the hydrolysis of α1-3,6 linked D-galactopyranosyl residues
Glycans treated with alpha1-3,4,6 Galactosidase that catalyses the hydrolysis of α1-3, α1-4, and α1-6 linked D-galactopyranosyl residues
Glycan(s) treated with alpha1-2,3 Mannosidase that catalyses the hydrolysis of α1-2 and α1-3 linked D-Mannopyranosyl residues
Glycan(s) treated with alpha2-3,6,8 Neuraminidase that removes α2-3, α2-6, and α2-8 linked N-acetyl-neuraminic acid residues
Glycan(s) treated with alpha2-3,6,8,9 Neuraminidase A that removed all terminal sialic acids. Note some enzymes release α2-3 and α2-6 linkages at a higher rate than α2-8 and α2-9.
Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown.
Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan.
Glycan(s) treated with alpha-N-acetylgalactosaminidase that catalyzes the hydrolysis of α-linked D-N-acetylgalactosamine
Glycan(s) treated with alpha1-2 Fucosidase that catalyses the hydrolysis of linear α1-2 linked L-fucopyranosyl residues
Glycan(s) treated with alpha1-6 Mannosidase that removes α1-6 linked D-mannopyranosyl residues.
Glycan(s) treated with alpha2-3 Neuraminidase that catalyses the hydrolysis of α2-3 N-acetyl-neuraminic acid residues from oligosaccharides. Note some α2-6 linked removed at a lower rate.
Glycan treated with alpha2-3 Neuraminidase S
Glycan labelled with 2-aminobenzoic acid
Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none.
A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate.
Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions.
Glycan(s) treated with beta-N-Acetylglucosaminidase that catalyses the hydrolysis of terminal, non-reducing β-N-Acetylglucosamine residues
Glycan treated with beta-N-Acetylglucosaminidase S
Glycan treated with beta-N-Acetylhexosaminidase that catalyses the hydrolysis of terminal β-D-N-acetyl-galactosamine and glucosamine residues from oligosaccharides.
Glycan(s) treated with beta1-3 Galactosidase that catalyses the hydrolysis of β1-3 D-galactopyranosyl residues. Some enzymes known to cleave β1-6 but a lower rate.
Glycan(s) treated with beta1-4 Galactosidase that catalyses the hydrolysis of β1-4 linked D-galactopyranosyl residues.
Beta elimination that released glycan from glycoconjugate.
A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized.
A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid.
Object is compounds that have affinity to glycan or glycoconjugate.
Release of glycan that is used chemical reaction.
A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit.
References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on.
Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan.
Superclass of types of glycan related molecules and fragments.
Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration.
The subject is a structurally defined motif, and the object is a glycan structure or motif.
Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened.
List of core modifications that can appear on a monosaccharide.
Alditol: Reduction of the aldehyde group to CH2OH.
Deoxygenation of a position: The OH group is removed and replaced by a hydrogen atom.
Double bond in the basetype backbone. This modification implies that - unless explicitly stated with a deoxy modification - hydroxyl groups are preserved.
Double bond in the basetype backbone with unknown deoxygenation pattern.
Loss of stereochemistry due to identical substituents with DEOXY and H_LOSE linkage types at a single position.
A carbonyl group in the open chain version of a monosaccharide. This modification is omitted if it is only present at position 1 (standard aldose).
Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans.
Bacterial Carbohydrate Structure DataBase
Database containing glycan structure information.
Database containing carbohydrate conformation
Database of carbohydrates at the atomic level.
Database of glycomics experiments such as NMR, MS, array data, etc-
Database containing monosaccharide information.
Taxonomical information regarding glycans are available.
Consortium for Functional Glycomics Structure Database
Chemical Entities of Biological Interest
Japan Consortium for Glycobiology and Glycotechnology DataBase
Plant and Fungal Carbohydrate Structure DataBase
Object is a reaction process, which degrades the subject.
if this glycan was elucidated (rather than just studied) in this publication
Release of glycan by an enzymatic reaction.
Enzyme that take part in synthesis anddegradation of glycan.
An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis.
Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)
Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results.
Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results.
Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results.
Experiments using capillary electrophoresis to identify and characterize carbohydrate structures.
Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties.
Experiments using mass spectrometry to identify the carbohydrate structures.
Experiments using NMR to identify the carbohydrate structure.
A brief descripition of the sample analysed. This may be required if taxon, tissue, and disease are not sufficient. An example may include analysis of a sample with no specified background e.g. commerical project.
A furanose is a five member ring structure containing four carbon atoms and one oxygen atom.
A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc.
A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database.
Instances of this class are the categories for the classification of glycan databases.
A glycan epitope is a special motif which has a known biological function.
A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning.
A class for process of glycan release, including chemical and enzymatic reaction.
Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other.
Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure.
Lipid with saccharide(s) attached by glycosidic bond(s).
A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated.
A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated.
Sequence of the glycan in a specified sequence format.
Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate.
An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein.
glycosylates
Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them.
Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue.
Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown.
Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder.
Binding affinity value for the lectin or antibody.
This property is used to specify the aglycon portion of a glycoconjugate compound.
reference to aliases for the monosaccharide
Name of compound. Use if name is not with compliant with Oxford Shorthand format, IUPAC, GlycoCT/WURCS, or Motif/Epitope.
has association
This property is used to specify a glycan portion of a glycoconjugate compound.
literal numeric with decimal, calculated from monosaccharide composition with average atomic weight
Object is the basetype of the monosaccharide (subject).
Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues.
Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues.
Glycan annotation with associated CE electrogram evidence
chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)
Code for compound. This may be linked with a commerically available compound and its catalogue number or in-house available compound e.g. synthesied standard.
Object is a component, representing the monosaccharide composition of the subject.
has_compound
reference to another RDF describing a core modification that is present in this basetype
Type of the core modification. Instances of class are core modification types.
Object is bond order that is number of linkage in default.
Object is second bond order that is number of linkage in default.
Instances of this class are linkage type .
Instances of this class are second linkage type.
A position that is number of linkage in default.
A position that is number of second linkage in default.
glycan of which organism authors wanted to synthesize or model
Object is an enzyme, which performs the reaction.
The object is a structural motif with biological relevance; subproperty of has_motif.
evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data.
Relation to exoglycosidase treated sample
Reference to another RDF resource with URI describing the first monosaccharide configuration
The glycan object referenced by this subject.
This object property links Glycan class to glycanFormat class
Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate.
glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format.
This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide.
Object is a URI to an image instance describing a graphical representation of the glycan.
Keyword for the publication. Object is a URI in MeSH.
path from the reducing end or from the rightmost residue in repeat
Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position.
GlycoCT linkage type of the monosaccharide to the substituent
Manufacturer of the device used in the experiment.
experimental procedures described in the article
Model of the device used in the experiment.
Position of the modification at the monosaccharide.
Second position of the modification at the monosaccharide (eg. for double bounds)
Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope.
URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB).
One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes
The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ...
Id of the monosaccharide in MonosaccharideDB.
single-character literal (S,M,D,T ,Q) or combination
Description / short hand of the phase e.g. HILIC, PGC
Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count.
URI of the precursor peak of a MS^n spectra.
Protein name in accordance with UniProt accession with information available.
Reference between :compound, :citation, :evidence, :source and :referenced_compound.
IUPAC monosaccharide basetype information. Without absolute configuration D or L
(min, max, exact, average, unknown) part of repeating unit
value of repeat_attribute in resource, if known
Monosaccharide annotation of the subspectrum.
Retention time of the molecule in the experiment in minutes.
position of last carbon involved in ring closure
position of first carbon involved in ring closure
Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters
Stereocode describing the backbone stereochemistry
The location of the referenced compound in a publication (e.g. Figure 1).
Second linkage position at the substituent.
The substituent is linked to the basetype in this monosaccharide.
URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)
Allows to specify the synthesis type used to generated the glycan.
Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters
Link to an unassigned signal which is just a chemical shift.
When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein.
xsd:string such as http://foo.bar.com/someglycan?id=%s
Reference to another biological source representing the host organism.
Image class for representing glycan images.
carbohydrate sequence format of the sequence given in the glycosequence instance
Glycan is present in the glycan database specified by the URI.
Boolean indicating whether the subject is a fully defined structure including all linkage information, or not.
If the synthesised or modeled molecule is just a fragment or the complete target molecule
A profile can have many peaks and saccharides. It represents a single LC run (parent or digest).
Reference to a report (internal, contract, method development or similar) with no associated publication.
Source annotation for a referenced compound.
is glycosylated on
If true unassigned signal. NO if a signal can not exist, rather than its unknown.
indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)
Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)
Class that contains Liquid Chromatography properties such as gradient, Lc column.
A class of protein that binds to glycans but is neither an antibody nor an enzyme.
List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages.
The substituent is linked directly to the basetype backbone by replacing the OH group.
A standard O-linked substituent, i.e. the substituent replaces the hydrogen of an OH group.
The substituent is linked directly to the basetype backbone by replacing the hydrogen atom.
The substituent is linked directly to the basetype backbone by replacing a hydrogen atom at a terminal position, which would be non-chiral without the substituent, resulting in an R-configuration of the carbon.
Same as R_CONFIG, but resulting in an S-Configuration of the carbon.
Modification type is represented due to biological process, typically N-linked or O-linked.
Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI: http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0
Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme.
List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme.
Two-letter residue names used within the AMBER GLYCAM forcefield. For more information, see Carbohydrate Naming Convention in Glycam. Note (1): Monosaccharide alias names in GLYCAM notation also encode linkage positions (in the first character of a three-letter-code residue name). These depend on the context of a residue within an oligosaccharide and thus are no monosaccharide properties. GLYCAM names stored in MonosaccharideDB refer to a terminal residue. The first character might have to be adjusted according to the specific context of a residue, i.e. in case other residues linked are to the given one. Note (2): The GLYCAM notation is not yet supported by the notation parsing routines, i.e. GLYCAM alias names can be created, but not be read yet.
The notation used by the Russian BCSDB. For more information on this notation, see the description on the BCSDB homepage.
The CarbBank notation is based on the IUPAC extended notation. It is used by the Complex Carbohydrate Structure Database (CCSD), which is better known by the name of its query software "carbbank". CarbBank style notation forms the basis of several other notations, such as the Glycosciences.de scheme.
The LinearCode notation used by the US Consortium for Functional Glycomics (CFG).
The nomenclature that is used by EUROCarbDB. For more information see www.eurocarbdb.org/recommendations/encoding/.
The Notation used in the Glycosciences.de web portal. It is based on the CarbBank notation.
MonosaccharideDB's internal notation format. Basetype and substituent names are the same as in GlycoCT, with the exception that 'anhydro' and 'lactone' modifications are included in the basetype here, while they are defined as substituents in GlycoCT. As most glycobiologist and also most carbohydrate databases consider a monosaccharide that contains substituents as one residue, they are defined in this way in MonosaccharideDB as well.
The 3-letter residue names as used by the Protein Data Bank (PDB). Unlike most of the other notations, these names cannot be generated automatically by conversion routines but have to be assigned manually by the database administrators. Some PDB residue names that encode carbohydrate residues define disaccharides or oligosaccharides. These are not implemented in MonosaccharideDB, as the scope of this database is on monosaccharide residues.
Class that contains all monosaccharides properties such as anomer, basetype etc.
Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state.
Class that contains Mass Spectrometry properties such as adduct, adduct ion etc.
Parentclass for all classes used in NMR evidences.
Open chain sugar that does not form a ring.
Part of a protein amino acid sequence generated by digestion for analysis.
A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide.
Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies.
Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases.
A Pyranose is any cyclic isomer that has a five carbons and one oxygen in a ring of six atoms.
Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)
Class for reaction process to create or degrade glycans or glycoconjugates.
Beta elimination that is used reducing a get for stabilize glycan.
Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication.
List of relative monosaccharide configurations according to IUPAC.
List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown.
A resource entry describes an entry about the glycan in another database.
A monosaccharide whose ring type is unknown.
Classification hierarchy for molecular functions.
A process which is the syntesis or preparation of sample for glycan analysis.
A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides.
Software that has been utilized for the glycan. For example software used to model the glycan.
A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution.
A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created.
Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan.
Class for modeled source. Instance contain information about the software used for modeling and the target organism.
Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on.
Class for source from sample. Instance contain sample type.
Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic.
Subspectrum of NMR data. It contains the annotated signals.
Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf
Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type.
List of substituent types possible on monosaccharides.
Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them.
Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF.
A symbol is Consortium for Functional Glycomics (CFG) notation.
CFG symbol that is displaied black and white notation.
A glycan structure is displayed by text-only form.
UOXF symbol that is displayed black and white notation.
Object is a reaction process, which synthesizes the subject.
Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis.
Chemical synthesis that various protecting group manipulations used in the context of glycan synthesis.
Relying on a hybrid of chemical and enzymatic steps that typically begins with chemical synthesis and ends with enzymatic extension.
Employing glycosyltransferases and glycosidases in a synthetic schema.
Glycan labelled with 9-aminopyrene-1,3,6-trifulfonic acid
Glycan labelled with 8-aminonaphthalene-1,3,6-trisulfonic acid
8-aminonaphthalene-1,3,6-trisulfonic acid
Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline.
Flow rate refers to the flow of mobile phase through the column and is measured in ml/min.
Solvent gradient explained by change in composition with respect to time.
reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy.
The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent.
PSI: The method by which gas phase ions are generated from the sample.
PSI: Instrument model name not including the vendor's name.
PSI: Mass analyzer separates the ions according to their mass-to-charge ratio.
Uniprot term for Glycosylation type (e.g. N-glycosylation)