Controlled vocabulary of variables used in ZonMV COVID project
ZonMW Project Controlled Vocabulary of Variables
This is a set of controlled terms which are deprecated.
deprecated
focus area
therapeutics
surveillance
diagnostics
transmission
intervention
preparedness and response
infection prevention
stewardship
zoonotic disease
vector-borne disease
prion disease
microbiome
prudent use
human domain
animal domain
environment
environmental domain
microorganism
temporal scope
diagnostic phase
screening phase
intervention phase
disease phase
free-from-disease phase
aftercare phase
population group
subject with an infection
subject with a bacterial infection
subject with a viral infection
subject with an unknown infection
subject with risk of infection
subject with risk of bacterial infection
subject with risk of viral infection
subject having antimicrobial treatment
subject having vaccination
subject having other treatments
subject by age
subject by sex
pathogen
infectious agent
infectious agent having antimicrobial resistance
soil
soil-waste
wastewater
water
air
livestock
diary cattle
veal calve
beef cattle
buffalo
sheep (wool)
sheep (milk)
goat (meat)
goat (milk)
horse
pig
broiler
layer
poultry
insect
wildlife
companion animal
fungus
aquaculture
data
epidemiological data
diagnostics usage data
complete medical records
imaging data
data regarding antimicrobial resistance
health status data
taxonomical data
survey data
economic data
treatment data
environmental data
genomics data
physiological data
audiovisual data
organism
specimen
domain
Unicellular, prokaryotic organisms that reproduce by cell division and usually have cell walls; can be shaped like spheres, rods or spirals and can be found in virtually any environment.
bacteria
An infectious agent which consists of two parts, genetic material and a protein coat. These organisms lack independent metabolism, and they must infect the cells of other types of organisms to reproduce. Most viruses are capable of passing through fine filters that retain bacteria, and are not visible through a light microscope.
virus
macromolecule
protein
antibody
Any organism that has a close, symbiotic relationship with a separate, host organism.
parasite
animal
outbreak
biopsy sample
blood specimen
bronchoalveolar lavage fluid sample
cerebrospinal fluid sample
respiratory sample
skin swab
specimen from geinital system
specimen of unknown material
stool specimen
synovial fluid specimen
urine specimen
body fluid sample
plant
fruit
vegetable
crop
cereal
oil seed
pulse - bean
tree nut
detailed type of specimen
amniotic fluid
ascites fluid
blood (whole)
bone
bone marrow aspirate
breast milk
bronchoalveolar lavage
buccal cells
cells from fine needle aspirate
cells from laser capture microdissected tissue
cells from non blood specimen type (e.g. ascites, amniotic), non-viable
cells from non blood specimen type (e.g. ascites, amniotic), viable
cells from non-blood specimen type (e.g. dissociated tissue), non-viable
cells from non-blood specimen type (e.g. dissociated tissue), viable
cerebrospinal fluid
cord blood
density-gradient-centrifugation-separated mononuclear cells, non viable
density-gradient-centrifugation-separated mononuclear cells, viable
dental pulp
disrupted tissue, non-viable
dried whole blood (e.g. guthrie cards)
enriched (physicochemically) circulating tumor cells
fresh cells from non-blood specimen type
fresh cells from non-blood specimen type (e.g. biopsy)
hair
nails
nasal washing
non-density-gradient-centrifugation-separated buffy coat, non-viable
non-density-gradient-centrifugation-separated buffy coat, viable
placenta
plasma, double spun
plasma, single spun
pleural fluid
red blood cells
saliva
semen
serum
solid tissue
sputum
stool
synovial fluid
tears
teeth
urine, 24 h
urine, first morning
urine, random
urine, timed
isolation source
human material
animal material
specimen from environment
plant specimen
solution
biomedical device
quality control of biomaterials
pre-analytical data
quality management of pre-analytical data
concentration of molecular or cellular derivatives
purity of nucleic acids
amplifiablility of nucleic acids
storage format for long-term preservation
type of primary container
pre-centrifugation conditions
centrifugation conditions
post-centrifugation conditions
storage temperature for long-term preservation
quality control of microbiological material
authenticity of microbiological material
purity of microbiological material
viability of microbiological material
once every year
every two years
every five years
less frequently
integrity of nucleic acids
food specimen
health record data
physiological - biochemical measurement
sequencing - genotyping data
clinical records
follow-up records
monitoring data
surveillance data
patient ethnicity data
quality data
experimental data
biospecimen processing
data analysis
data integration
digital imaging
FAIRification service
providing reference materials
quality control
regulatory
training
communication
health data
personal information data
national registries data
organisation level
university faculty
university hospital
laboratory
research group
specific research project
reference centre
company department
public funding
private funding
charity of philanthropic funding
collection status
not started
in progress
completed
consent restriction
commerial resctriction
disease area restriction
export restriction
genetic analysis restriction
human genetic analysis restriction
project specific restriction
scope of use restriction
access condition
open to everyone
open to applicants
open in response to specific calls
open only through collaboration
data access only
access restricted at present
closed to access
time frame
up to one month
up to one year
up to three years
three years or longer
data quality
data plausibility
data completeness
data accuracy
sensitive information
yes, and it is GDPR compliant
yes, but it is not (yet) GDPR compliant
plant disease
viral disease
bacterial disease
fungal disease
nematode disease
phytoplasma disease
disease caused by insects
parasite disease
non-infectious disease
animal disease
funding type
storage
centrifugation
storage information
centrifugation information
viability frequency