Announcements

November 1, 2017

CAFE v4.1 is out!

Added

• seed: new command that sets the random seed so commands with randomness can be replicated

Changed

• report: fixed bug where viterbi values were showing incorrect data
• load: fixed bug in handling trees with more than about 100 species

August 21, 2017

CAFE v4.0.2 is out!

Added

• load: max_size parameter added that filters out any families with family sizes larger than the value
• lambda: warning added when calculated posterior probability for a family is 0
• Use Intel compiler and MKL library for calculations if they are available

Changed

• - Fixes to allow compilation with gcc 4.9
• Errormodel command no longer fails if model has fewer lines than the expected maximum family size

May 15, 2017

CAFE v4.0.1 is out!

Added

• report: "json" flag added to output data in that format;
• load: Files with "CSV" extension will now be interpreted as comma-separated values;

Changed

• Buffer overflow error when setting random family sizes fixed