# TSSnote-CyaPromBERT 

A repo containing supplemental data for TSSNote-CyaPromBERT an integrated pipeline for constructing curated promoter prediction tools using SOTA BERT through public dRNA-seq datasets

Google Colab Links  
CyaPromBERT: For inferencing promoter of Synechococcus and Synechocystis species using trained model  
https://colab.research.google.com/drive/1tIPjTVemenLoTp-05Dqb7F7pOGKofP3Q?usp=sharing  

TSSNote: a Google-colab based TSS identification and promoter extraction from SRA database  
https://colab.research.google.com/drive/1P53HJx_8oMGWVabMVgrz77uEc4rCryzv?usp=sharing  

Model Training: Train a BERT model for promoter prediction task    
https://colab.research.google.com/drive/16vSVDpY46yQXn3xT2MWRAj5WVGVc_gmZ?usp=sharing