{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# PC-Hazard Example \n", "\n", "In this notebook, we will present a simple example of the `PCHazard` method described in [this paper](https://arxiv.org/abs/1910.06724).\n", "\n", "For a more verbose introduction to `pycox` see [this notebook](https://nbviewer.jupyter.org/github/havakv/pycox/blob/master/examples/01_introduction.ipynb)." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import matplotlib.pyplot as plt\n", "\n", "# For preprocessing\n", "from sklearn.preprocessing import StandardScaler\n", "from sklearn_pandas import DataFrameMapper \n", "\n", "import torch # For building the networks \n", "import torchtuples as tt # Some useful functions\n", "\n", "from pycox.datasets import metabric\n", "from pycox.models import PCHazard\n", "from pycox.evaluation import EvalSurv" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "## Uncomment to install `sklearn-pandas`\n", "# ! pip install sklearn-pandas" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "np.random.seed(1234)\n", "_ = torch.manual_seed(123)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Dataset\n", "\n", "We load the METABRIC data set as a pandas DataFrame and split the data in in train, test and validation.\n", "\n", "The `duration` column gives the observed times and the `event` column contains indicators of whether the observation is an event (1) or a censored observation (0)." ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "df_train = metabric.read_df()\n", "df_test = df_train.sample(frac=0.2)\n", "df_train = df_train.drop(df_test.index)\n", "df_val = df_train.sample(frac=0.2)\n", "df_train = df_train.drop(df_val.index)" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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x0x1x2x3x4x5x6x7x8durationevent
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" ], "text/plain": [ " x0 x1 x2 x3 x4 x5 x6 x7 x8 \\\n", "0 5.603834 7.811392 10.797988 5.967607 1.0 1.0 0.0 1.0 56.840000 \n", "1 5.284882 9.581043 10.204620 5.664970 1.0 0.0 0.0 1.0 85.940002 \n", "3 6.654017 5.341846 8.646379 5.655888 0.0 0.0 0.0 0.0 66.910004 \n", "4 5.456747 5.339741 10.555724 6.008429 1.0 0.0 0.0 1.0 67.849998 \n", "5 5.425826 6.331182 10.455145 5.749053 1.0 1.0 0.0 1.0 70.519997 \n", "\n", " duration event \n", "0 99.333336 0 \n", "1 95.733330 1 \n", "3 239.300003 0 \n", "4 56.933334 1 \n", "5 123.533333 0 " ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_train.head()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Feature transforms\n", "\n", "The METABRIC dataset has 9 covariates: `x0, ..., x8`.\n", "We will standardize the 5 numerical covariates, and leave the binary covariates as is.\n", "Note that PyTorch require variables of type `'float32'`.\n", "\n", "We like using the `sklearn_pandas.DataFrameMapper` to make feature mappers." ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [], "source": [ "cols_standardize = ['x0', 'x1', 'x2', 'x3', 'x8']\n", "cols_leave = ['x4', 'x5', 'x6', 'x7']\n", "\n", "standardize = [([col], StandardScaler()) for col in cols_standardize]\n", "leave = [(col, None) for col in cols_leave]\n", "\n", "x_mapper = DataFrameMapper(standardize + leave)" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "x_train = x_mapper.fit_transform(df_train).astype('float32')\n", "x_val = x_mapper.transform(df_val).astype('float32')\n", "x_test = x_mapper.transform(df_test).astype('float32')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Label transforms\n", "\n", "The survival methods require individual label transforms, so we have included a proposed `label_transform` for each method.\n", "In this case `label_transform` is just a shorthand for the class `pycox.preprocessing.label_transforms.LabTransDiscreteTime`.\n", "\n", "The `PCHazard` is a continuous-time method, but requires defined intervals in which the hazard is constant. Hence, we need to perform an operation similar to a discretization of the time scale.\n", "We let `num_durations` define the size of this (equidistant) interval grid." ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [], "source": [ "num_durations = 10\n", "labtrans = PCHazard.label_transform(num_durations)\n", "get_target = lambda df: (df['duration'].values, df['event'].values)\n", "y_train = labtrans.fit_transform(*get_target(df_train))\n", "y_val = labtrans.transform(*get_target(df_val))\n", "\n", "train = (x_train, y_train)\n", "val = (x_val, y_val)\n", "\n", "# We don't need to transform the test labels\n", "durations_test, events_test = get_target(df_test)" ] }, { "cell_type": "code", "execution_count": 9, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "pycox.preprocessing.label_transforms.LabTransPCHazard" ] }, "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ "type(labtrans)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Note that `y_train` now consist of three labels: the interval index, the event indicator, and the proportion of the interval before the event/censoring occur (i.e, $\\rho(t_i)$ in the [paper](https://arxiv.org/abs/1910.06724))." ] }, { "cell_type": "code", "execution_count": 10, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "(array([2, 2, 6, ..., 1, 5, 3]),\n", " array([0., 1., 0., ..., 1., 0., 0.], dtype=float32),\n", " array([0.7965465 , 0.69519496, 0.7370492 , ..., 0.06606603, 0.5865238 ,\n", " 0.96302533], dtype=float32))" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "y_train" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Neural net\n", "\n", "We make a neural net with `torch`.\n", "For simple network structures, we can use the `MLPVanilla` provided by `torchtuples`.\n", "For building more advanced network architectures, see for example [the tutorials by PyTroch](https://pytorch.org/tutorials/).\n", "\n", "The following net is an MLP with two hidden layers (with 32 nodes each), ReLU activations, and `num_nodes` output nodes.\n", "We also have batch normalization and dropout between the layers." ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [], "source": [ "in_features = x_train.shape[1]\n", "num_nodes = [32, 32]\n", "out_features = labtrans.out_features\n", "batch_norm = True\n", "dropout = 0.1\n", "\n", "net = tt.practical.MLPVanilla(in_features, num_nodes, out_features, batch_norm, dropout)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "If you instead want to build this network with `torch` you can uncomment the following code.\n", "It is essentially equivalent to the `MLPVanilla`, but without the `torch.nn.init.kaiming_normal_` weight initialization." ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [], "source": [ "# net = torch.nn.Sequential(\n", "# torch.nn.Linear(in_features, 32),\n", "# torch.nn.ReLU(),\n", "# torch.nn.BatchNorm1d(32),\n", "# torch.nn.Dropout(0.1),\n", " \n", "# torch.nn.Linear(32, 32),\n", "# torch.nn.ReLU(),\n", "# torch.nn.BatchNorm1d(32),\n", "# torch.nn.Dropout(0.1),\n", " \n", "# torch.nn.Linear(32, out_features)\n", "# )" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Training the model\n", "\n", "To train the model we need to define an optimizer. You can choose any `torch.optim` optimizer, but here we instead use one from `tt.optim` as it has some added functionality.\n", "We use the `Adam` optimizer, but instead of choosing a learning rate, we will use the scheme proposed by [Smith 2017](https://arxiv.org/pdf/1506.01186.pdf) to find a suitable learning rate with `model.lr_finder`. See [this post](https://towardsdatascience.com/finding-good-learning-rate-and-the-one-cycle-policy-7159fe1db5d6) for an explanation.\n", "\n", "We also set `duration_index` which connects the output nodes of the network the the discretization times. This is only useful for prediction and does not affect the training procedure." ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [], "source": [ "model = PCHazard(net, tt.optim.Adam, duration_index=labtrans.cuts)" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", "text/plain": [ "
" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "batch_size = 256\n", "lr_finder = model.lr_finder(x_train, y_train, batch_size, tolerance=8)\n", "_ = lr_finder.plot()" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.10722672220103299" ] }, "execution_count": 15, "metadata": {}, "output_type": "execute_result" } ], "source": [ "lr_finder.get_best_lr()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Often, this learning rate is a little high, so we instead set it manually to 0.01" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [], "source": [ "model.optimizer.set_lr(0.01)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We include the `EarlyStopping` callback to stop training when the validation loss stops improving. After training, this callback will also load the best performing model in terms of validation loss." ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "0:\t[0s / 0s],\t\ttrain_loss: 2.6413,\tval_loss: 2.5174\n", "1:\t[0s / 0s],\t\ttrain_loss: 2.3406,\tval_loss: 2.3192\n", "2:\t[0s / 0s],\t\ttrain_loss: 2.1494,\tval_loss: 2.0976\n", "3:\t[0s / 0s],\t\ttrain_loss: 1.9278,\tval_loss: 1.8521\n", "4:\t[0s / 0s],\t\ttrain_loss: 1.7077,\tval_loss: 1.6468\n", "5:\t[0s / 0s],\t\ttrain_loss: 1.5645,\tval_loss: 1.5185\n", "6:\t[0s / 0s],\t\ttrain_loss: 1.4957,\tval_loss: 1.4789\n", "7:\t[0s / 0s],\t\ttrain_loss: 1.4887,\tval_loss: 1.4919\n", "8:\t[0s / 0s],\t\ttrain_loss: 1.4821,\tval_loss: 1.4874\n", "9:\t[0s / 0s],\t\ttrain_loss: 1.4499,\tval_loss: 1.4807\n", "10:\t[0s / 0s],\t\ttrain_loss: 1.4514,\tval_loss: 1.4747\n", "11:\t[0s / 0s],\t\ttrain_loss: 1.4425,\tval_loss: 1.4793\n", "12:\t[0s / 0s],\t\ttrain_loss: 1.4182,\tval_loss: 1.4848\n", "13:\t[0s / 0s],\t\ttrain_loss: 1.4268,\tval_loss: 1.4878\n", "14:\t[0s / 0s],\t\ttrain_loss: 1.4193,\tval_loss: 1.4861\n", "15:\t[0s / 0s],\t\ttrain_loss: 1.4099,\tval_loss: 1.4978\n", "16:\t[0s / 0s],\t\ttrain_loss: 1.3999,\tval_loss: 1.5006\n", "17:\t[0s / 0s],\t\ttrain_loss: 1.4148,\tval_loss: 1.4996\n", "18:\t[0s / 0s],\t\ttrain_loss: 1.4060,\tval_loss: 1.5080\n", "19:\t[0s / 0s],\t\ttrain_loss: 1.3819,\tval_loss: 1.5106\n", "20:\t[0s / 0s],\t\ttrain_loss: 1.3740,\tval_loss: 1.5111\n" ] } ], "source": [ "epochs = 100\n", "callbacks = [tt.callbacks.EarlyStopping()]\n", "log = model.fit(x_train, y_train, batch_size, epochs, callbacks, val_data=val)" ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", 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" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "_ = log.plot()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Prediction\n", "\n", "For evaluation we first need to obtain survival estimates for the test set.\n", "This can be done with `model.predict_surv` which returns an array of survival estimates, or with `model.predict_surv_df` which returns the survival estimates as a dataframe.\n", "\n", "However, we need to define at how many points we want to get the predictions.\n", "The default (`model.sub = 1`) is just to use the interval knots, but by increasing the `model.sub` argument, we replace the knots with and equidistant number of points in each interval.\n", "This is very similar to the interpolation of the discrete methods such as `LogisticHazard` and `PMF`." ] }, { "cell_type": "code", "execution_count": 19, "metadata": {}, "outputs": [], "source": [ "surv = model.predict_surv_df(x_test)" ] }, { "cell_type": "code", "execution_count": 20, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", 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" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "surv.iloc[:, :5].plot(drawstyle='steps-post')\n", "plt.ylabel('S(t | x)')\n", "_ = plt.xlabel('Time')" ] }, { "cell_type": "code", "execution_count": 21, "metadata": {}, "outputs": [], "source": [ "model.sub = 10" ] }, { "cell_type": "code", "execution_count": 22, "metadata": {}, "outputs": [ { "data": { "image/png": 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OO1x99dV0dHRw+PBhLrvsMj4RWCAbBgWHMpdummtQrs1qTXkVKU2nnnoqr732WuTvo+BQIvyZS2MOb+DIFBv0BWWa5urLp1mtjfxEqpuCQwnwZy49cWA6s4+ML46DjAvksp3mms96CJ9mNYlUHwWHEuDvu3T5ffA1PhXrP0DGHkS+ci0xaSM/keqj4FAOWpZ324MpX/mUmILUjxCpfAoOpW7y7M7bee7B5AuWmLI5HyJIs5pEKp+CQwlKNKdjxjPr9B/Eyk557sGUTrbnQ2SiLEKkMik4lBi/OQ2xQAF0OQsilXyOGs13PYRPs5pECq+jo4PGxkbq6+tZnMUC13woOJSY4KFAnRlEnN9/gF73IILy2bwvQbOaRArj3nvvZcKECezZsyey91BwKCd+/wEy9iDSHTWaSW+b1ZrVJBK95uZmnnrqKW699Va+/e1vR/Y+Cg7lpHFe10CQpgeR6ajRTDI1q3PNIqBrJtG0tYmmrU3J/ZoUKKTcvfj4WrZvag31NetOrOXDl43NeM0XvvAFvvnNb7J3795Q3ztIwaEC5XrUaCphTHn1M4mFaxcmA4PKTSL5Wbx4MccddxxnnXUWL7zwQqTvpeBQBvzZS7NOr+/anA5xDYQvjCmvPjWupdL09Bt+FF566SUWLVrEkiVLaG9vZ8+ePXz2s5/lJz/5SejvpeBQ4vzZS91mLvk9iI2/j/1JbPcdCBTZbtCXShhTXn1qXIvk5xvf+Abf+MY3AHjhhRf41re+FUlgAAWHktd1a43AzCW/B9G0oDMwBBrV+ayB8IUx5dWnxrVI6VNwqBR+oFhwcZdy0yRg0l/HMol8+g+p9LZZ7dNCOpHcnXfeeZx33nmRvb6CQyXKYcprPsJoVvu0HYdI6VFwKDNdt9ZI0aCG1FNeE5lEy2Vs31+fd/8Bwp/y6lMWIVIaFBzKSL5ba/iZxFj7X3DnQstRbG87Fva25BwcfIXMIkCZhBSfcw4zK/Yw0nLOhfI6FtYLFVJjY6Nramoq9jCKLpFBPHb99Oy/yWtc/+L1i+HIQVzy71eHMp5EFlHjHXbem0zCXxsBsYV0AI3DGwEFCim89evXM3jwYIYNG1aSAcI5x44dO9i7dy+jR4/u8pyZveKca8z2tZQ5VBu/5PRPP4YD74e2V1PYU16Ds5q0kE6KraGhgebmZrZt21bsoaRVU1NDQ0NDr19HmUMZyytz8Pzi9iVs3wZ1A+M/6O27GTvgd0yasC92v5eL6oKZRG/7Eb5EyWnc0HGAsgiRnihzqDIZV0/3YOxHT4OXtwLHA7B9405wRzGJx0OZ4RR2P8KnxrVItCLNHMxsBnAv0Bd4wDl3V4prLgNuBxzwJ+fcFT29rjKHmJ8u/QtPvr4ZiAWJiSOG5J1FQOceTJd86czOGU7HT449WUZZBCiTEAkqmczBzPoC3wcuBJqBZWa2yDm30rtmDPBl4EPOuffM7LioxlOJMq6e7q1MW3Mkns8hWBQqiwDtACsShijLSlOBdc65twHM7FFgFrDSu+bvgO87594DcM69G+F4JAudezCdxtipH4tNc/W35oC8Sk5hb+TnU+NaJHxRBod6YJN3vxmYFrhmLICZvUSs9HS7c+5XqV7MzOYD8wFGjsy+rl5NetN/gAx7MGVaVAe9yiIg/ExCayVEei/K4JBqEnCwwdEPGAOcBzQAL5rZB5xzu7p9o3P3A/dDrOcQ7lDLX8bdW7OU9TnUOewGm0qqjfzCXGXtU8lJJD9RBodm4ETvfgOwJcU1f3TOHQTWm9kaYsFiWYTjqkiR9h+C0u0Gm2dvIsp+hEpOIvmJbLaSmfUD1gIfBTYT+wf/CufcCu+aGcCnnXNXm1kd8BpwunNuR6bX1mylzHq7/gFimcP25lbqGmqBLPdgCvYmNv4+9vWkc2JfswgUUc5qCtJaCakmJTNbyTl3yMxuBJ4m1k940Dm3wsy+BjQ55xbFn/uYma0EOoB/6ikwSGHkdQZEsDeRKatIEyiizCKCMp1xnXhewUKqlVZIV6DL7/tDct1DQj4N6oQu6x/yFQwU0JlRQMpgEfZeTZloHyepdJFkDmbWCHwYOAHYB7wJ/No5tzOvUUqk8t69NQP/mFHIY6vvdH0KSJtVRD2ryafehEhXGTMHM7sG+DywHngFeBeoITYF9UPEgsS/Ouf+EvlIPcocctPbHsSKFzez9uWtyfuJXkSvMglfpqzCyygK2Y/wqTchlSDszGEQsdXL+9K82enEZhcVNDhIYflTXKGHaa75yHL205Che6D+aCD6foRPvQmpRnn3HMzsSOfcgZDHkxVlDrkJ9iB603+AkHoQ2cgw+2njT7fQvsNRM+lUoHBZhHoTUq6i6jm8AFzjnNsQvz8V+C/gtDzGKAUWxgK5IL8Hkc9Ro1nJMPtpyPAWaB8ALctp29RO27Jl7Fm8OHlpVMFCvQmpFlllDmb2cWK7q36X2LYYFwF/65wLub6QHWUO+QtjDYTfgwi9/5AtL1C899yr7Nk4AGqOAqD93QPUjK7npP95pqBDUm9CSlkkmYNz7mkz+3vgWWA7cIZzriXPMUqZy3qbjSh5WcUxkxdwjFd+2vjgKtr/vJGNF54BwJCJtRxzeue03t5uP56OehNSSbItK/0rcBlwLnAq8IKZfck591SUg5No9HaDvqCClJgyCZSfhmy7CZ79HRDLIqC1MzjksRdUtvySU7A3oZKTlJtsy0r3ArckZi2Z2UnEDu+5MOLxpaSyUv7CPiCoJEpMGXRbSLe3hSEn7YsFizy298iXSk5SbFGVlW4K3N9I7BAfKTNhb9BXEiWmDIIL6dpWb6JtNezZORr2TosFipNIvWmgr5eBI1PJSYFCSpHOkJaKFtwe/L3HHk/OamrfvAsGj+eYeQ93nzbrC6EUla7kpHKTlCrtrVTFotiDyd/JFYrUg8hS1iuue9oXypdj4ND511IoJbMrq5S+sPdg8ndyhRx2cy0Sv+TUtmxZ+rUSmfaF8uWRYegwIilVPe2tdG6Wr7OhkPsrKXOIRhhrIHwFW0kdAr/cBCQzipMeeTj7F/EDR8tyOH4yzMttQl+w5DRu6DgWzFiQ02uIpJJr5tBTcMj2p/IX8fMZCkLBIRpRbLOR84FBJaLXm/wlztk+fnLnY70sOSmLkN4ItazknItmXp+UpLC32cjrwKASkanklFWg8M/Zhl6XnLSoTgpNDWlJqZpLTEFdZjjlU26CrLclTyfVojqVnCQXoZaVSpWCQ/SiCA7lWmLyhXI6XQi9CZWcJFearSShCXObjXIuMfm6LarLp+Tkz35K9CYWXNz5fC9LTgoUEoZs91Z6xDl3ZU+PSeUIu/9Q6iups5VxUV0+BxDl2ZvQojqJWrZ7K73qnDvTu98XWO6cmxjl4NJRWamwoi4xQfmWmXyhHGPay5KTFtVJOqGWlczsy8BXgAFmtifxMHAAuD/vUUpVK7fFctnyS055H2OaqeSUx6I6ZRKSr2wzh284575cgPFkRZlDYYW9zUZQOc9kSmfjlVcB5D6rydfTth1ZBAs1riUh7MxhlHNuQ7rAYGYG1DvnmnMcp5SRsLfZSKXoZ0JEoH316mSQgDzKTJm27ciyN+FnEsoiJBc9NaT/3cz6AE8CrwDbgBrgFOB84KPAVwEFhwrmb/MN4Wz17auUmUy+4KymvMtMCRnO06Zleec1AX7jet6vtKZVstdjWcnMJgKfAT4EjAD2AauAp4AnnHPtUQ8ySGWl4gp7mw1fpayHCAqlzJROcKuONFmESkzVLfR1Ds65lcCtvRqVVJSwp7n6KjGLSPDLTHnNZErHnw6b6tCieLBQiUly0dPGe1OATc65lvj9q4BLgY3A7c65nQUZZYAyh9IR9jRXXyU1qkPZgiMbqXoT0G2rDk15rT5h78r6KnCBc25nfPvuR4HPAacDE5xzs9N+c4QUHEpHIUtMUBllpkhLTEFpZjwtpJUl9n7ysjUcYNygehbM+WX0Y5KiCLus1NfLDi4H7nfO/Rz4uZm9nu8gpXIUqsQElVVmiqzEFJRmxtMcapnjOoPuvP1roX1dTmsqpLL1GBzMrJ9z7hCxmUnzc/heqQL+TKawZzH5W25AeW+74QtlsVw+gjOefAsvYs37m5nHVmjfzczf3sqcFH0LqR49/QP/M+C3Zrad2CylFwHM7BRgd08vbmYzgHuBvsADzrm70lw3G1gITHHOqV5UxvzN+iDcMhNUxnoIf38mfx1EMc087VpI7M+0bTnUHMWcRMU5VZM7QUGjYvV02M/Xzew5YlNYn3GdDYo+xHoPacX3X/o+cCGxdRDLzGxRfPaTf91g4PPA0vz+E6RURL1YrlJnMvV6sVwIgush1uxcw7yhx8WerD2bma1tdGtVZ5gZJeUvm6msf0zx2NosXnsqsM459zaAmT0KzAJWBq77N+CbwM1ZvKaUsKgXywV3dq2ELCL0xXIh6LY/08HdMGIcc4IHC/W0atunoFF2IjvsJ14qmuGc+9v4/SuBac65G71rzgD+xTl3qZm9ANycrqxkZvOJ9zxGjhx51saNGyMZt4QnyplMK17czNqXtwIkZzRVwpTXUHZ2DVnWi+eCwSIhzwONJFyldNiPpXgsGYni23J8B7gmmxdzzt1PfCfYxsbG8ju+rgpFOZOpUs6HCCpaszqDrBfPpWt4+wcZSdmIMjg0Ayd69xuALd79wcAHgBdi+/dxPLDIzD6ppnRliHImU5BfYoLyLTOVYrM6ZT8ivk+TFs5VriiDwzJgjJmNBjYDc4ErEk8653YDdYn7PZWVpPyFeeyoT+shCkdbcFSPyIKDc+6Qmd0IPE1sKuuDzrkVZvY1oMk5tyiq95bSU6gSE1ROmakUS0yZsgjIkEnkcU62FFekC9mcc0uAJYHHbktz7XlRjkWKK1hiino9RCUIlphKYcqrL+tT54LnZGfYYlxKh1Y5S8Hp8KDcleKUVz+LgAz9iGCjWg3qsqDgIAWnw4Ny52cRUDrNap/6EZVFwUFKQpjN6kqd5hpUas1qzWqqLAoOUnRRNqsrVSk2q309ZhF+g1rN6ZIU2QrpKOk8h8oV9qrqSjowKJ1SXFXt63aw0N6W+F5NtVo9XUCltEJaJGdRZBGVskAunXLKIiCwV5Oa0yVLmYOUrDCOIPX3YILK2ocplWAWASWeSbQsZ6YbxJx5vy32sCqeMgepKL1dD1GpC+TSKcUpr0F+JtFk+2my/Sx5KPZv1swTPsycj32nWEMTj4KDlKxCrIeoNKmmvJbyrKaFz/wjS7a8CMAa1w5bXux+boQUhcpKUjbCaFYnzoGoa4idn1xp/Yeg9x57nD2LFwMky00nPfJwkUeV2ryHGlnDAcYdf1byMU2BDY/KSlKxwmhWV+ICuUwybcFRClmEb6Yb1GWj/6atTTRtbWJJ/PhSBYrCUnCQspFpf6Zss4hqWSCXSqnPappDLXPeWQ/uXQAWMpQltQMBBYpiUHCQsqSFc7kr9Y38ghv0zWlZz5zjJ8OcBSxcuzAZGLQ1R2Go5yBlL9iLgOwyiWrrP/j8XgSUaD8isQYisECu26I6lElkQz0HqTr5zmqqtv6DrxxmNaUTXFSnklM0lDlIxcln8Vw1bLORiZ9JtC1bBsDAKVOSzxclWCy4uHN7DUi7B5NfcmraGvt3oXF4fN2EAkWSMgcRojuStFL5mUSqklPimoLyexAZDgjqsm5CvYnQKHOQivPTpX/hydc3AyR7ET1lEcH+A1RXDyKTktjYL03/IRP1JrpS5iBVLzjlNRt+/wGqrweRiT8Ftm3ZMtqWLUtmFgUNFDlu8531MaaSkjIHqWi9mckE1duDSKdoK66bFsDyJ2K389zmO5hJVFsWocxBxNOb/Zkq7RzqMBRtrYR/DnWe23zrGNPcKDhIRcv3vOpqnuaareAOsEUtOWUheIypZKbgIFUnm5lM1bzNRraCayWCJafENZHw+w+Q11GjOuM6MwUHqSr5bruhElPPCrbJX2CbjUzTXNNRialnakhL1cp2C3D/NLlKP0kuLAVtXOcxzdVXLVNe1ZAWyVK2WYRKTLkLZhGRy3Gaq09TXlNTcJCqlc96COhaYgKVmbIR6aymLFdSp+M3qqEzk6j2foSCg0hcNudVa7Fc7iI/1zqEafrczZAAAA5ASURBVK4+9SNiFBxEyH49hF9iApWZspFqB9hI9aLEBN2nvPpZBFRPJqHgIELq9RDZbt6nmUwlpJclpqBq7kdEGhzMbAZwL9AXeMA5d1fg+S8CfwscArYB1zrnNkY5JpFsZNus1mK5/EQ2zTVYYurleohU/YhqEVlwMLO+wPeBC4FmYJmZLXLOrfQuew1odM61mdk/AN8ELo9qTCLZyva8as1kyl3BzrIOYT1EKtXSrI4yc5gKrHPOvQ1gZo8Cs4BkcHDO/ca7/o/AZyMcj0heclk4pxJTzwo2zdXPIiD0ZnWln0AXZXCoBzZ595uBaRmuvw74ZbonzWw+MB9g5Egd3CKFkymLgM5MQiWm/BT0eNIQm9WVfrBQlMHBUjyWcjm2mX0WaAT+Ot2LOefuB+6H2ArpMAYokqtMs5pUYspdwUpMEHqzutJnNUUZHJqBE737DcCW4EVmdgFwK/DXzrn9EY5HpNd6M6tJuivoSupMzeo8sghfJc5qijI4LAPGmNloYDMwF7jCv8DMzgDuA2Y4596NcCwikcjUj9BK6twV7HyICLMIqIxV1pEFB+fcITO7EXia2FTWB51zK8zsa0CTc24R8O9ALbDQzAD+4pz7ZFRjEglbun7E8e2HmHhU5/9e6kH0LPKV1L6Qp7wGVcIq60jXOTjnlgBLAo/d5t2+IMr3FykkP4t4/mAbLSOG8Nj1sd1b1YPoWcFXUidEMOU1Uz+iXLIIrZAWCUmmWU2nvrOfutojizm8slSQmUypprxG1I8opyxCwUEkAsFZTXv2HaSmtYOv3/wCACecOox5V00uwsjKR0FnMvkintVULnTYj0gBLHh4OVve2AHAgPc72DeoL7d+67ziDqqMJE6Wqxk/Hijg+dSJLOJ4L5D3IpNIBIcFMxaEMbqc6LAfkRLkZwlfv/kF2vYf0vTXHJREFgGhZBLlsh5CwUGkwOpqj2R7/PbS9TtZun4nT76+Ofm8gkV3BT9ZLiHkfkQ5rYdQcBApsOMG19Bn9yHmtvbnIzXHsPKIDlriz/W0d5PEFGw9RJCfSWz8fezP8ic6n+shUJTTLq8KDiIF5u/B1Gf3Ic5rqOWS+JRXrbjuWUHXQwT5mUTTgs7AENKOr6VEDWmRIkqsf7jkS7Hg8NOlf0mWmJau3wnAtNFDAQWKdIrWrPbl2bhOrIEYN3QcEG3/QQ1pkTLjb7MxALhtamwTv2CgUG8itaI1q315Nq5LeQ2EMgeRIlrx4mbWvrw1eX97cyt1DbXJTCLBDxQQ601MHDGEx66fXrCxloOSyCKgeyaRZRYB0U1zzTVzUHAQKSG/uOfVZICA9Jv1JXoTE0cMAZRFJLz32OPsWbwYgLZlywAYOGVK8vmCBQu/H7Hx97GvJ50T+5omUERdYlJZSaSMZXtgkL8CO1hyquZA4U959QMFlEjjOjjDCZLBotRKTMocREpUsFmdTqYmNlR3sPCVRMnJDxSQNquIosSkzEGkgmRzJrW/4V+q3kTimmpXEo3r4KK6dFmFbWVNX4q6klqZg0iJ8pvV6RrVPVFvIrWSyCKCvECxcOdrLBk0CGqOAmANBxg3qJ4Fc36Z98urIS1SgYKNasjuZDk/k9AMp04l07hOJ1B+mrd/LQAL+o+NPZDH5n8KDiIVKNspr5koi0gtVeO6Zvx4Tnrk4SKOqqt5Cy9izfubGceR0L6bme+/z5yhZ6S+OE3gUHAQqQLZTnn1KYvITimWnBauXciSt2OHaq7ZtpxxHbDADe9+YYZpswoOIlWgt/2IYBYByiQSSr3klHE9RIb1FXbtEgUHkWrS2ywClEmkEyw5BYNFMQJFlywiHiRSTnkNBAq7Y4+Cg0g18bOILW/tAuCEMUcnn88mWKgfkZ1MWUUxAkUwi4A0U15/eQs2824FB5FqlW/jWgvpclcK5Sc/iwBo2hr7d7FxeCwG+IFCPQcRSVLJqTBKpfyUqeSk4CAiSVpIVxylUH4KlpweuughBQcR6S6fLAJ0AFFv9VR+8oUZOPwsomlrE29e86aCg4h0F0bjWr2J3gmWn3xRZhh3v3w3t0y7RcFBRDILY8V1sDeRKlgkKGj0LOoMQz0HEclZviUnXzBYJGQKGqDAkUouGUZQusCh4CAiOeup5OTLNXCkCxrQc+DwKYjE5Bs4Rv3kEQUHEclfsOTkCwaOfDIMX6bA4VMQyU6mwKHgICKRiTLDyCSKIJJJJQaYkiormdkM4F6gL/CAc+6uwPP9gYeBs4AdwOXOuQ09va6Cg0jx5ZJhZFKMIJJJWAEmnWIFnpI5JtTM+gLfBy4EmoFlZrbIObfSu+w64D3n3ClmNhe4G7g8qjGJSHgmfbg+7T/qmQKHb8tbu9jy1q6srs3GAGAu/ZP3w2ysh2Hp+p0sXb8zstcPU5RnSE8F1jnn3gYws0eBWYAfHGYBt8dvPwF8z8zMlWOtS0SSMgUOX7ZBJB/5Bp5ggAnTR2qOYXvrAXhrfySvn8njOV4fZXCoBzZ595uBaemucc4dMrPdwDBge/DFzGw+MB9g5MjKqgWKVKtsg0g+ogw8+TpucA3HDa4p9jCyEmVwsBSPBTOCbK6JPejc/cD9EOs59G5oIlLpogw8Zenm3C7vE80ogFimcKJ3vwHYku4aM+sHHAXsjHBMIiKShSiDwzJgjJmNNrMjgbnAosA1i4Cr47dnA8+r3yAiUnyRlZXiPYQbgaeJTWV90Dm3wsy+BjQ55xYBPwIeMbN1xDKGuVGNR0REshdlzwHn3BJgSeCx27zb7cCc4PeJiEhxRVlWEhGRMqXgICIi3Sg4iIhINwoOIiLSTVnuympme4E1xR5HnupIsQK8TGjsxaGxF0eljf0k59yx2b5ApLOVIrQml90FS4mZNWnshaexF4fGXhxhjF1lJRER6UbBQUREuinX4HB/sQfQCxp7cWjsxaGxF0evx16WDWkREYlWuWYOIiISIQUHERHppqyCg5nNMLM1ZrbOzG4p9nh6YmYbzGy5mb1uZk3xx4aa2bNm9lb86zHFHmeCmT1oZu+a2ZveYynHazHfjf9dvGFmZxZv5GnHfruZbY5//q+b2UzvuS/Hx77GzD5enFGDmZ1oZr8xs1VmtsLMboo/XvKfe4axl/znHh9LjZm9bGZ/io//jvjjo81safyzfyx+5ABm1j9+f138+VElOPaHzGy999mfHn88958b51xZ/CG27fefgZOBI4E/AROLPa4exrwBqAs89k3glvjtW4C7iz1Ob2znAmcCb/Y0XmAm8Etip/l9EFhagmO/Hbg5xbUT4z8//YHR8Z+rvkUa9wjgzPjtwcDa+PhK/nPPMPaS/9zj4zGgNn77CGBp/DN9HJgbf/yHwD/Eb/9f4Ifx23OBx0pw7A8Bs1Ncn/PPTTllDlOBdc65t51zB4BHgVlFHlM+ZgE/jt/+MfB/ijiWLpxzv6P7SXzpxjsLeNjF/BE42sxGFGak3aUZezqzgEedc/udc+uBdcR+vgrOOfeOc+7V+O29wCpiZ6uX/OeeYezplMznDhD/DFvjd4+I/3HAR4An4o8HP/vE38kTwEfNLNVRx5HLMPZ0cv65KafgUA9s8u43k/kHsRQ44Bkze8XM5scfG+6cewdi/3MBxxVtdNlJN95y+fu4MZ5GP+iV8Epy7PEyxRnEfgssq889MHYok8/dzPqa2evAu8CzxLKZXc65Q/FL/DEmxx9/fjcwrLAj7hQcu3Mu8dl/Pf7Zf8fM+scfy/mzL6fgkCpCl/o83A85584ELgJuMLNziz2gEJXD38cPgL8CTgfeAe6JP15yYzezWuDnwBecc3syXZrisVIbe9l87s65Dufc6cTOuJ8KTEh1WfxrSY0/OHYz+wDwZWA8MAUYCvxz/PKcx15OwaEZONG73wBsKdJYsuKc2xL/+i7wC2I/fFsT6Vz867vFG2FW0o235P8+nHNb4/8DHQb+i84SRkmN3cyOIPaP63875/5f/OGy+NxTjb1cPnefc24X8AKxevzRZpbYd84fY3L88eePIvtSZmS8sc+Il/qcc24/sIBefPblFByWAWPiMwmOJNYQWlTkMaVlZoPMbHDiNvAx4E1iY746ftnVwJPFGWHW0o13EXBVfBbEB4HdiTJIqQjUVC8h9vlDbOxz47NPRgNjgJcLPT6IzSIhdpb6Kufct72nSv5zTzf2cvjcAczsWDM7On57AHABsb7Jb4DZ8cuCn33i72Q28LyLd3sLLc3YV3u/UBixXon/2ef2c1Osbns+f4h13NcSqwveWuzx9DDWk4nNzPgTsCIxXmI1yueAt+JfhxZ7rN6Yf0asDHCQ2G8a16UbL7E09fvxv4vlQGMJjv2R+NjeiP/PMcK7/tb42NcAFxVx3OcQS+/fAF6P/5lZDp97hrGX/OceH8upwGvxcb4J3BZ//GRiQWsdsBDoH3+8Jn5/Xfz5k0tw7M/HP/s3gZ/QOaMp558bbZ8hIiLdlFNZSURECkTBQUREulFwEBGRbhQcRESkGwUHERHppl/Pl4hULzNLTCkFOB7oALbF77c5584uysBEIqaprCJZMrPbgVbn3LeKPRaRqKmsJJInM2uNfz3PzH5rZo+b2Vozu8vMPhPfb3+5mf1V/LpjzeznZrYs/udDxf0vEElPwUEkHKcBNwGTgSuBsc65qcADwOfi19wLfMc5NwW4NP6cSElSz0EkHMtcfK8aM/sz8Ez88eXA+fHbFwATvSMAhpjZYBc7C0GkpCg4iIRjv3f7sHf/MJ3/n/UBpjvn9hVyYCL5UFlJpHCeAW5M3Emc7ytSihQcRArn80Bj/JSulcDfF3tAIuloKquIiHSjzEFERLpRcBARkW4UHEREpBsFBxER6UbBQUREulFwEBGRbhQcRESkm/8PKaasmNwOb2wAAAAASUVORK5CYII=\n", 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" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "surv = model.predict_surv_df(x_test)\n", "surv.iloc[:, :5].plot(drawstyle='steps-post')\n", "plt.ylabel('S(t | x)')\n", "_ = plt.xlabel('Time')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Evaluation\n", "\n", "The `EvalSurv` class contains some useful evaluation criteria for time-to-event prediction.\n", "We set `censor_surv = 'km'` to state that we want to use Kaplan-Meier for estimating the censoring distribution.\n" ] }, { "cell_type": "code", "execution_count": 23, "metadata": {}, "outputs": [], "source": [ "ev = EvalSurv(surv, durations_test, events_test, censor_surv='km')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "#### Concordance\n", "\n", "We start with the event-time concordance by [Antolini et al. 2005](https://onlinelibrary.wiley.com/doi/10.1002/sim.2427)." ] }, { "cell_type": "code", "execution_count": 24, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.6573402857263979" ] }, "execution_count": 24, "metadata": {}, "output_type": "execute_result" } ], "source": [ "ev.concordance_td('antolini')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "#### Brier Score\n", "\n", "We can plot the the [IPCW Brier score](https://onlinelibrary.wiley.com/doi/abs/10.1002/%28SICI%291097-0258%2819990915/30%2918%3A17/18%3C2529%3A%3AAID-SIM274%3E3.0.CO%3B2-5) for a given set of times.\n", "Here we just use 100 time-points between the min and max duration in the test set.\n", "Note that the score becomes unstable for the highest times. It is therefore common to disregard the rightmost part of the graph." ] }, { "cell_type": "code", "execution_count": 25, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", "text/plain": [ "
" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "time_grid = np.linspace(durations_test.min(), durations_test.max(), 100)\n", "ev.brier_score(time_grid).plot()\n", "plt.ylabel('Brier score')\n", "_ = plt.xlabel('Time')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "#### Negative binomial log-likelihood\n", "\n", "In a similar manner, we can plot the the [IPCW negative binomial log-likelihood](https://onlinelibrary.wiley.com/doi/abs/10.1002/%28SICI%291097-0258%2819990915/30%2918%3A17/18%3C2529%3A%3AAID-SIM274%3E3.0.CO%3B2-5)." ] }, { "cell_type": "code", "execution_count": 26, "metadata": {}, "outputs": [ { "data": { "image/png": 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\n", 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" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "ev.nbll(time_grid).plot()\n", "plt.ylabel('NBLL')\n", "_ = plt.xlabel('Time')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "#### Integrated scores\n", "\n", "The two time-dependent scores above can be integrated over time to produce a single score [Graf et al. 1999](https://onlinelibrary.wiley.com/doi/abs/10.1002/%28SICI%291097-0258%2819990915/30%2918%3A17/18%3C2529%3A%3AAID-SIM274%3E3.0.CO%3B2-5). In practice this is done by numerical integration over a defined `time_grid`." ] }, { "cell_type": "code", "execution_count": 27, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.16404163283537904" ] }, "execution_count": 27, "metadata": {}, "output_type": "execute_result" } ], "source": [ "ev.integrated_brier_score(time_grid) " ] }, { "cell_type": "code", "execution_count": 28, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0.4844648690929724" ] }, "execution_count": 28, "metadata": {}, "output_type": "execute_result" } ], "source": [ "ev.integrated_nbll(time_grid) " ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.7.4" } }, "nbformat": 4, "nbformat_minor": 4 }