00mathieu FarsExample Functions to deal with FARS data 00mathieu noaaQuake NOAA earthquakes dataset functions 07engineer FCZ12.Residential EnergyPlus Calibration tools 07engineer HVACControlAnalysis Tools for analysis of energy savings for HVAC control measures 07engineer residential_loadshapes Functions for modeling residential loadshapes in EnergyPlus 0xh3x hellodublinr Sample Package for DublinR Talk 100sunflower100 MethylChiPAnno 100sunflower100 git 11010tianyi latticist Automatically exported from code.google.com/p/latticist 11010tianyi peanutqtl 11010tianyi playwith Automatically exported from code.google.com/p/playwith 13479776 statTarget Statistical Analysis of Metabolite Profile 13bzhang fbsample R Package for Quota Sampling on Facebook 16EAGLE getSpatialData An R package making it easy to access multiple kinds of spatial data via R. All BETA. 16EAGLE moveVis This is an R package providing tools to visualize movement data by creating path animations from geo-location data. 16mc1r dpaux Personal R Auxiliary Functions 16xchen Biomy 17843 mandrill R wrapper for the Mandrill API 17843 rollmop 1mp3rium titanfall R package - a package with frequently used fucntions in data sceince and machine learning 1na colr Select columns in R by full regex 28pro92 packages-GMeta 2pie Peg-Solitaire 2pie myprobit 2radix5 firstTestPackage This is just R package Testing 3inar einr A collection of miscellaneous R functions 3inar geneset Gene sets and functions for working with them. 3inar grindr Coffee grinder statistics 3inar nowaclean NOWAC data cleaning package 3inar pmadsim pmadsim — Prospective Microarray Data Simulation. This is a fork of the madsim R package. 3inar tinypackage 3inar validator An R package for doing repeated k-fold cross validation 3wen legendMap North arrow and scale bar for ggplot2 graphics. 3wen plotRTeX Converts ggplot2 graphics to PDF using LaTeX 419kfj NeoRun Get Lap data, Graph data, and GPS data from CSV file in Backup Mode. 42n4 dmr.util Utils from the Cichosz book "Data Mining: Explained Using R" 42n4 fUnitRoots 4DGenome BSgenome.Dmelanogaster.flybase.dm3 50mkw chinaWeather 52North sensorweb4R Access to sensor data using the 52°North Sensor Web Client API 52North sensorweby A JavaScript sensor web client with graphs and analytics powered by Shiny 52North sos4R R client for the OGC Sensor Observation Service 56north NutrientData Contains the nutrient composition of foods: raw, processed and prepared 56north Rmazon The goal of Rmazon is to help you download product information and reviews from Amazon.com easily. 56north boligmarkedsstatistikken Boligmarkedsstatistikken indeholder kvartalsvise oplysninger om de gennemsnitlige kvadratmeterpriser og antallet af frie handler for parcel- og rækkehuse, ejerlejligheder og fritidshuse siden 1992. Tallene er opgjort for landet som helhed, men også for de enkelte regioner, landsdele, kommuner og postnumre. Det er også muligt at hente nøgletal på… 56north foaas R wrapper for FOASS. FOAAS (Fuck Off As A Service) provides a modern, RESTful, scalable solution to the common problem of telling people to fuck off. 56north geoDK Provides danish GIS data for R 56north happyorsad R package that does sentiment scoring of text strings by looking at words and emoticons. 56north hexamapmaker Turns a set of points into hexagons 56north hvorlangterder An R wrapper for the hvorlangterder API 56north leafletDK 56north mailchimpR The package wraps the mailchimp api and aims to provide easy access to mailchimp from R. 56north namesDK Gender classifier for danish names 56north pollsDK Pulls different political danish polls 56north postlightmercury R wrapper for the postlight mercury web parser 56north spotifycharts The goal of spotifycharts is to make it easy to get chart data from Spotify. 56north statisticsDK R wrapper for Statistics Denmarks API 69069145 ArithmeticBasic Squaring Vectors 6Youcai ABSOLUTE ABSOLUTE v1.2 6Youcai Xtable 7factory RMixpanel RMixpanel - Mixpanel API client package for R 87875172 Scuff 87875172 scuff 942kid lclust An attempt to cluster longitudinal data 942kid plac A Pairwise Likelihood Augmented Cox Estimator for Truncated Data 942kid pocure 94giulia demoproject 9thcirclegames bgg-analysis What makes a game a good game? 9thcirclegames rpgplayers-analysis Who are the italian tabletop RPG players and what do they play? A-Simmons RemoteLyraR A1dnoah QCtest fastqc report A99055105 Linreg AABoyles AIPredict An R Package of datasets to help predict the timeline leading up to an Intelligence Explosion. AABoyles CountryVector This was a proof-of-concept for the project that ultimately became https://github.com/dsself/standardizecountries AABoyles ShRoud A Package with all the functions I wish were in Base R or other R packages I use all the time. AABoyles ShinyGeolocate An R Package exposing user geolocation to Shiny Applications AABoyles hadleyverse DEPRECATED. Instead of this, please use https://github.com/hadley/tidyverse ABFenix 06_libreriaR Libreria que contiene las funciones asociadas a la practica 6 ABFenix libreriaR Trabajos comunes en el tratamiento de datos ABS-dev DiagTestKit A package written by CVB Statistics supporting the 2018 revision to VSM 800.73 ABS-dev MF Mitigated Fraction ABS-dev PF ABS-dev skrmdb Package to estimate ED50 by the methods of Spearman-Karber, Reed-Muench, and Dragstedt-Behrens. ABbiodiversity cure4insect Custom Reporting for Intactness and Sector Effects ABbiodiversity cure4intactness Custom Reporting for Intactness and Sector Effects ABindoff TwilightFree R package for TwilightFree method of geolocation from (noisy) light data ABoVE-AotM above R package for analysis of animal movement and environment data - primarily for internal collaboration of Animals on the Move / ABoVE project ACSoupir Endophyte Package to make endophyte data processing more simple AChauvenet ProtectEqual ProtectEqual is an R package to calculate proportional and fixed-area Protection Equality of reserve networks AEBilgrau Bmisc Biostatistical miscellaneae AEBilgrau DLBCLdata Gene expression profiles on Diffuse Large B-Cell Lymphoma AEBilgrau GMCM Unsupervised Clustering and Meta-analysis using Gaussian Mixture Copula Models AEBilgrau HierarchicalEdgeBundles Bundle those edges! AEBilgrau correlateR General purpose correlation and covariance estimation AEBilgrau metaHD High-dimensional meta analysis AFIT-R KraljicMatrix An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio AFIT-R MODA An implementation of Multi-Objective Decision Analysis algorithms AFIT-R OPER782 This package contains a series of functions that will allow students in the OPER 782 class to experience making a pull request, raising an issue, forking, and other GitHub functionality AFIT-R anomalyDetection An R package for implementing augmented network log anomaly detection procedures AFIT-R instaExtract Extract Data from Instagram AFIT-R ordr An R package for ordinal regression diagnostics AFIT-R sure Surrogate-based residuals for cumulative link and general regression models in R AFIT-R surrogateResiduals surrogateResiduals AFIT-R vip Variable importance plots AFialkowski SimCorrMix Simulation of Correlated Data of Multiple Variable Types including Continuous and Count Mixture Distributions AFialkowski SimMultiCorrData SimMultiCorrData R package AFialkowski SimRepeat Simulation of Correlated Systems of Equations with Multiple Variable Types AGAuffret HistMapR AGStanton dataproducts Repo for the Data Products Course Project AIBRT FreqProf R Package for Frequency Profiles AKLLaursen danStat A package providing a graphical user interface to the data from Danmarks Statistik. AKLLaursen euleR Solutions for https://projecteuler.net/ problems AKLLaursen mycroftr AKLLaursen powerfor powerfor contains all code written by Andreas Keller Leth Laursen for the master thesis: "An Empirical Comparison of Models for Forecasting Electricity Prices. AKLLaursen svmfortopic AKitsche statint Analysis of statistical interactions ALShum Retsly R bindings to Retsly API ALShum TrolleR ALShum ggvis_examples ALShum hashids-r Implementation of hashids v1.0.x in R ALShum mathdoku ALShum pokeme Text message notifications in R ALShum rtwilio ALShum rwunderground A simple R package to get historical and forecast weather data AMCOOK FoodHabits AMCOOK bio.ccir Continuous change in ratio AMCOOK bio.eels Flexible Per recruit analysis for American eels AMCOOK bio.survey AMSProject pmtest this is a R package for testing partially matched data AMUFacultyOfEnglish ENRanalytics AMUFacultyOfEnglish PERUanalytics AMUFacultyOfEnglish PERUapp AMUFacultyOfEnglish pearsonSecurity AMolinaro partDSA AMolinaro partDSA-Code APCC21 rSForecast AQLT AQLTools AQLT JDCruncheR AQS-Group WISH ASBecker insertPipe RStudio Addin: Inserts %>% pipe at cursor position ASeatonSpatial BlackGrouseProject Package of functions for my Black Grouse MSc dissertation ASharmaML nmf-gene ATFutures popdens Global population density estimates and projections AU-BURGr ozdata Collect Australian data sets and work with them. Created at The 2017 BURGr R Unconference in Brisbane, Australia. AVJdataminer Squeaky R package for data cleansing AWF-GAUG fisim Forest Inventory Simulator (fisim) is a package for simulating response and samplign designs common in forest inventories AWF-GAUG gsgsim Global Sampling Grid simulation framework AWKruijt bagels shiny bagels in R AaarrrRookie GWR fast regression of the german "Morbi-RSA" (risk ajustment) and calculation regional models. AaronGreenberg ELEFAN New ELEFAN AaronGullickson fakeunion R package for generating a set of counterfactual union from a set of actual unions and alternate partners AaronRendahl WeatheringTrends AbdouSeck AfroData A wrapper for Afrobarometer's datasets AbhinavYedla AndroidWorkSpace AbhinavYedla BlackBerryWorkSpace AbhinavYedla Data_Scrape_Tidy_SocialMentions Data Scraping programs for Social Mentions web site AbhinavYedla GoogleAutoComplete Data scraping program for google auto complete AbhinavYedla SocialMentions Scraping social mention website AbhinavYedla Wikipedia Wikipedia edits and views data AbhinavYedla gautocompleter Program to collect data using the Google Autocomplete API AbhinavYedla socmentionr Social Mentions web scraper AbhinavYedla wikipediar Program to collect data using the Wikipedia edits, views and Top1000 API Accio BioQC Detect tissue heterogeneity in gene expression data with BioQC Achab94 mplex mplex-package repository AchmadFauzi RcmdrPlugin.Fuzzcluster First Sync with github Adam-Hoelscher rIBNP rIBNP AdamSpannbauer lexRankr Extractive Text Summariztion with lexRankr (an R package implementing the LexRank algorithm) AdamSpannbauer rPackedBar Packed Bar Charts in R with Plotly (https://community.jmp.com/t5/JMP-Blog/Introducing-packed-bars-a-new-chart-form/ba-p/39972) AdamSpannbauer snakeLoadR small R package to add the snake game as a loader in a shiny app AdeVenecia tagalogstop Ademo73 Coursera_assignment This is a repository for the week 4 peer review assignment in the course 'Building R Packages' on Coursera AdriMaz flan R package for Inference on Mutation Models AdrianHordyk DLMtool Development Code for DLMtool. NOTE: the DLMtool repo has now moved to AdrianHordyk DLMtooldev Development code for the DLMtool which is available on CRAN. AdrianHordyk FModel Functions for interpreting fishing mortality rate AdrianHordyk LBSPR Length Based Spawning Potential Ratio R Package AdrianHordyk MSYield Multi-species yield analysis AdrianShe RPharmacoDB R Interface for PharmacoDB AdrielHamptonGroup acurateappendr 📲R Integration with Accurate Append API AdrienLeGuillou descriptor R package for data description AdrienMtgn pkg.bdx.suivi Test AharoniLab MatchWeiz Ahlallan MetaxpR Package for analyzing data generated by Molecular Devices MetaXpress® software Ahlallan MiXR Package for analyzing data generated by MetaXpress software AidanDelaney euleR R package for drawing Euler & Venn diagrams Aidenloe AIG Automatic Item Generator Aidenloe mazeGen Maze Item Generator Aidenloe netGen Network Item Generator Aidenloe numGen Number Series Generator Airfixer Raoul Airfixer Raoul22 Airfixer Raoul222 Airpino HistDAWass An R package for histogram data analysis Aisyahzkh IndonesiaStemmeR AkandaAshraf netsim netsim AkhilNairAmey CQLConnect A packages to further connect Sparklyr to Cassandra via the Datastax spark-cassandra-connector AkhilNairAmey SparklyrCassandraConnector A packages to further connect Sparklyr to Cassandra via the Datastax spark-cassandra-connector AkhilNairAmey crassy Sparklyr-Cassandra-Connector AkhilNairAmey dbUpdateTable Create keyed tables in a MySQL db from R data.table models which can easily be updated AkhilNairAmey sparklyCassandRa AkhilNairAmey sparklyrCassandr AkselA R-confintplot R package for displaying bootstrap-based confidence intervals around mean and median AkselA R-image A collection of methods for dealing with colourspaces of images in R AkselA R-rollfun A collection of rolling functions Akshaysg aks Alandasilva teomatrix Alanocallaghan EdinbrPlotly Alanocallaghan plotlytalk Alanwe AzureSM R Package for managing a selection of Azure resources. Targeted at Data Scientists who need to control Azure Resources without needing to both Administrators. APIs include Storage Blobs, HDInsight(Nodes, Hive, Spark), ARM, VMs AlarrionovTV RStatistics Albluca ElPiCycle A R package to learn and stage cell cycle using principal curve Albluca ElPiGraph.R An R package to construct Elastic Principal Graphs Albluca Pricecycle A principal circle based tool to study gene variation over the cell cycle in RNA-Seq data Albluca rRoma An r interface to perform ROMA Albluca rRomaDash a shiny dashboard to interact with rRoma Albluca rpgraph An r package to compute princial graphs AldoCP MetaBiasR AldoCP mztwinreg R package "mztwinreg": Regression Models for Monozygotic Twin Data AldoCompagnoni popler The R package to browse and query the popler database AldoCompagnoni poplerr The R package to browse and query the popler database AlejandroKantor akmisc R package of miscellaneous functions for data manipulation AleksandraDabrowska SequencingExplainer AlekseyPauls countriesLibR AlephbetResearch ReconomixR6 ReconomixR6 package AlephbetResearch rsql R SQL package AlexAxthelm IndianaCHEmisc Miscellaneous Functions Useful for Indiana Commission for Higher Education AlexAxthelm secrettest AlexChristensen NetworkToolbox Network Measures and Filtering Methods AlexChristensen SemNetCleaner A prototype linguistic network cleaner that automatizes spell checking, de-pluralizing, and binarizing of linguistic data. AlexDiru rsurfer AlexHelloWorld DifferentialAndSurvivalAnalysis function bundle for DESeq2 differential analysis, cox regression analysis, Pearson correlation and related plotting functions with ggplot2 AlexIoannides alexutilsr Utilities and example package structure for R. AlexIoannides elasticsearchr Lightweight Elasticsearch client for R. AlexIoannides pipeliner Machine learning pipelines for R AlexPiche BNP R package for Bayesian Nonparametric AlexPiche BNP2 No description or website provided. AlexPiche DPsurv Bayesian nonparametric models applied to survival data AlexPiche PSgraphing AlexRego edited_abc AlexRootcBio SysPharm Stores SysPharm R package AlexRootcBio hopfieldnetworks AlexSoudant isoclim-demonstration This package takes vegetation stable isotopes and flux-tower climate data to estimate the growing season, fit Gompertz curves accordingly to the life properties of wood cells and fit linear regressions between intra-annually time resolved isotopes and co-occuring climate data at a study site. Alexander-Morin HW09 AlexanderFengler addmtoolbox Collection of Tools for fitting attentional drift diffusion models (standard drift diffusion models included) AlexanderFengler asianprocesses Collection of Category Learning Algorithms AlexanderVR laggedLGCP Latent Gaussian process model for fitting multivariate Poisson or Coalescent processes with a time lag. AlexandreMertens GESLib AlexeiSleptcov aggi The package contains functions for array analysis. Methods for Agilent Arrays. AlexiaJM BayesTreePrior R package for the simulation of the prior distribution of bayesian trees by Chipman et al. (1998). AlexiaJM LEGIT An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model AlfonsoRReyes CreatingPackages creating packages. step by step. collected from different sources. AlfonsoRReyes RepDataPeerAssessment1 Reproducible Research Peer Assignment 1 (as a package) AlfonsoRReyes StudentGWAS Reproducing 2011 advanced course on R S4 classes AlfonsoRReyes martinezEDA datasets for Exploratory Data Analysis by Martinez & Martinez AlfonsoRReyes missingR dealing with missing data AlfonsoRReyes rDeepThought AlfonsoRReyes rODE a package for ODE solvers written in R with S4 classes. Based on OpenSourcePhysics project Alfred-Zhang ResearchTools AlfredUg microenv Algo1970 shinycodemaker AliDB onewayanova Calculating the oneway anova table as well as Fisher's LSD AliciaSchep gglabeller Shiny gadget for labeling points on ggplot AliciaSchep ggmotif add DNA sequence motifs to ggplot AliciaSchep rdummypkg r package that does nothing AliciaSchep rplotfriend R package to help with plotting AlinaVorontseva mylib AlineTalhouk Amisc Miscellaneous Utility Functions AlineTalhouk FluidigmValidation Scripts to compare tumour/normal from fluidimg data AlineTalhouk diceR Diverse Cluster Ensemble in R AlineTalhouk nanostringr No description or website provided. Allan-Hilbert bioinfor R package for bioinfomatics AllenInstitute atlasplot Reproducible Plots for the Allen Institutes Brain Atlases AllenInstitute brspdata Allen Institute BrainSpan Exon and Gene Expression Values AllenInstitute fetdata Normalized mRNA Expression Values for the Developmental Human Brain Atlas AllenInstitute hbadata Normalized mRNA Expression Values for the Human Brain Atlas AllenInstitute nhpdata Expression Values and Probes for the Non-human Primate Atlas AllenInstitute tasic2016data Single cell transcriptomic data from Tasic, et al. (2016) AllenTiTaiWang anamiR An integrated analysis package of miRNA and mRNA expression data AlonFriedman01 Peirce--Theory-of-Signs Peirce Semiotcs Theory AlonFriedman01 R-test AlphaIgor Test AlradSpectra AlradSpectra Alrad Spectra Package AlrikThiem QCApro Professional Functionality for Performing and Evaluating Qualitative Comparative Analysis AlteryxLabs AlteryxRhelper Create, manage and edit R code outside Alteryx in an IDE AlteryxLabs aso AlteryxLabs datadoctor Data Doctor AlvaroSoriano nnproj AmauryLabenne ClustGeo AmberGlasses chinaWeather AmberThrall RPokeAPI Small wrapper for the Pokéapi in R Amherst-Statistics katherinemansfieldr R Package for Katherine Mansfield's Short Stories AmirDJV TestFunctions AmirDJV UsefulFunctions AmurG PerformanceAnalytics Modified version of PerfA with three extra functions that calculate error in Sharpe, Adjusted Sharpe, and provide generic bootstrap wrapper for xts objects AmurG nse A modified version of the nse package ( https://r-forge.r-project.org/projects/nse/ ) to add support for xts object bootstrapping AmurG transistor An effort to model transistors, diodes and MOSFETs, among other microelectronic elements. Solutions to these circuits often require numerical methods. Amuraivel tradeMaster AmyOlex RNASeqBits An R library with bits and bobs to help in RNAseq analysis pipelines. AnGabrio missingHE Health Economic Evaluations with Missing Data using a set of pre-defined Bayesian models written in BUGS AnalyticsEnthusiast AppDynamicsCleaningFunctions Some functions for cleaning data exported from the metric browser AnalytixWare gosocket A simple goroutine-like function go.socket which allows code to be executed in a non-blocking manner on a socket server Ancamar BootValidation This package provides internal bootstrap validation for 'glmnet' models. Ancamar bootValidation bootValidation AndBooth Rutils A small package of R utility functions that I find useful AnderWilson BDLextend Bayesian Distributed Lag Extensions AnderWilson BayesPen Bayesian Penalized Credible Regions AnderWilson CliMaps An R Package to Map Gridded Climate and Exposure Data to Local Geographies AnderWilson GridToMaps AnderWilson ZIPLL AnderWilson regimes regimes: Regression in multivariate exposure settings AnderWilson smurf Some useful R functions AndersenLab COPASutils An R package for reading, cleaning, processing, and plotting COPAS BIOSORT data AndersenLab DilutionsCalculator AndersenLab cegwas Pipeline for performing GWAS mappings with C. elegans phenotype data AndersenLab cegwas2 AndersenLab easysorter Functions to read in and process data from Andersen Lab's COPAS BIOSORT AndersenLab linkagemapping AndersenLab vcfR Query VCFs in R! AndersenLab wormbase-api Anderson-Lab CCPredict Anderson-Lab ComplementaryDomainPrioritization Heterogeneous Domain Prioritization and Filtering Demonstrated on Proteogenomic Datasets AndreaCirilloAC ludo code and data from l'ufizio de l'occhio blog AndreaCirilloAC mine AndreaCirilloAC paletter build your palette from a picture AndreaCirilloAC ramazon run your shiny App on Amazon AWS running a function. AndreaCirilloAC updateR update your R version in a breeze ( on OSX) √ AndreaFerrante RTradingBacktester AndreasChristianHill classoptimr AndreasChristianHill forestinventory forestinventory AndrewFerris sufc1863 Data extraction and analysis tools for Sydney University Football Club AndrewGChapple SCRSELECT Performs variable selection in a semi-competing risks setting. AndrewLJackson SIBER ellipse and convex hull fitting package for stable isotope data AndrewLJackson siar Stable Isotope Analysis in R - package AndrewLJackson tRophicPosition estimate trophic position using SIA AndrewLJackson testTravis AndrewLim1990 stdDev AndrewPoppe melviewr A viewer program for MELODIC output and ICA+FIX AndreyChinnov ACTrading Andros-Spica biplot2d3d R package, creation of customizable biplots, both in two and three dimensions. Tested in Windows 7 and Mac OS X 10.9.5. Andros-Spica cerUB R package for multivariate statistic protocols for integrating archaeometric data (geochemical, mineralogical, petrographic) Andros-Spica rglordination Create and Customize Ordination Plots (Biplots) in 3D Using rgl in R Andryas ADCat Pacote com as técnicas estatísticas usuais para análise de dados categóricos Andy-McCarthy BasicMath BasicMath Andy-McCarthy RegressionImpact Display a plot of how impactful each predictor variable is on the response variable AndyCampbell rAcoS4 set of R S4 classes for processing acoustic survey data AndyClifton PowerPerformance R&D tools for wind turbine power performance testing AndyPL22 APfun Base tools for facilitating the creation geo-processing functions in R AndyPL22 APtools Various base tools created to support other libraries written by Andrew Plowright AndyPL22 ForestTools Tools for analysing remotely sensed forest data AndyPL22 TileManager Tools for creating and detecting tiling schemes for raster datasets AndySardina linear Dummy implementation of an R package AndySouth climcropr R package for simple crop modelling at global scale AndySouth coverage prototype R package and UI for visualising coverage of vector control interventions in light of vector behaviour AndySouth resistance insecticide resistance population genetics model as an R package AndySouth resistanceGame prototypes for resistance games AndySouth rmapteach AndySouth rnaturalearth 🌍 an R package to hold and facilitate interaction with natural earth map data AndySouth rnaturalearthdata to hold data used by rnaturalearth AndySouth rnaturalearthhires high resolution naturalearth data for rnaturalearth AndySouth rtsetse R package to simulate tsetse fly populations AndySouth rworldmap R package for mapping country data AnestisTouloumis HDTD Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables. AnestisTouloumis ShrinkCovMat Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size. AnestisTouloumis SimCorMultRes Simulates correlated multinomial responses conditional on a marginal model specification. AnestisTouloumis multgee GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parameterization. AngelBerihuete laeken2 Laeken indicators, TIP and Lorenz curves AngelBerihuete rtip AngelosPsy condir R package for analysing conditioning data AnguloB SubscaleExplorer Tools for scale analysis AngusWright LAMBDAR LAMBDAR: Lambda Adaptive Multi-Band Deblending Algorithm in R AngusWright astroFunctions General Functions for Astronomy AnhKhoaVo HW9-Package AnhKhoaVo HW9-Package- AnitaSzewczyk dlaAnitki Anmol6 524_1R AnnaMagdalena Ocgrtools AnneChao Completeness AnneChao Shared AnneChao SpadeR AnnePetersen1 PCADSC An R package for performing Principal Component Analysis-based Data Structure Comparisons (PCADSC) AnnickB MyPivot AnnikaGable chromium R package for the analysis and visualization of Hi-C data AnthonyEbert EasyMMD In development AnthonyEbert URLazyR Download files from websites in R AnthonyEbert queuecomputer R-package "queuecomputer" : Computationally efficient method for simulating queues. AnthonyRaborn ShortForm ShortForm AnthonyTedde RandomWalk AnthonyTedde StockPriceSimulator AntiDeprime berkson AntiDeprime r-soc-lib-hse No description or website provided. AntiDeprime rsochse AntonioCoppola AntonioCoppola.github.io AntonioCoppola lbfgs Efficient L-BFGS and OWL-QN Optimization in R AntonioCoppola stmCorrViz Visualizations for topic models AntoniusGolly cmgo Deriving principle channel metrics from bank and long-profile geometry with the R-package cmgo ApexRMS rsyncrosim The R interface to SyncroSim: http://syncrosim.com/ AppliedDataSciencePartners xgboostExplainer An R package that makes xgboost models fully interpretable Appnomic Find_Mean_EMA Appnomic MultipleImputation MultipleImputation Appsilon ci.example Sample R package project with CI configured using CircleCI. Appsilon highlighter htmlwidgets wrapper for highlight.js Appsilon modulesExtendeR Wrapper around klmr/modules to support relative paths. Appsilon rappsilon Appsilon semantic.dashboard Quick, beautiful and customizable dashboard template for Shiny based on shiny.semantic and Semantic UI. Appsilon shiny.collections Google Docs-like live collaboration in Shiny Appsilon shiny.i18n Shiny applications internationalisation made easy Appsilon shiny.router A minimalistic router for your Shiny apps. Appsilon shiny.semantic [Experimental] Shiny support for powerful Semantic UI library. Appsilon verified.installation R package that helps installing dependencies in Docker images Aqualinc GDATools R package implementation of the Agritech Excel-based GDATool Aquarela-Advanced-Analytics r2vortx R codes to allow connecting your data to VORTX machinelearning plataform. Arasaraja OpencpuR Opencpu Qliksense & R Integration Arasaraja Opencpu_Twitter Qliksense Twitter Sentiment Analysis Archimedes2kxx farspack Repo developed for JHU Building R Packages course Archimedes2kxx farspack3 Repo for Building R Packages course, JHU, Spring 2017 Arcturio mipqueteria exercise of the week 4 of course ArdiaD AdMit Adaptive Mixture of Student-t distributions ArdiaD DEoptim Differential evoluation in R ArdiaD PeerPerformance Set of functions to perform (financial) peer performance calculations ArdiaD RiskPortfolios Functions for the construction of risk-based portfolios ArdiaD Sentometrics ArdiaD bayesGARCH Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations Arevaju ocpuleaflet Test OpenCPU and Leaflet AriaGuo r-package-practise ArieTwigt hidePwd A gentle solution for preventing hard coded passwords in R scripts. Uses data encryption with keys. ArieTwigt passwordEncryptR A gentle solution for preventing hard coded passwords in R scripts. Uses data encryption with keys. ArlindoDosSantos btb Armadilloa16 dipps DIPPS code from my thesis wrapped into an R package Armadilloa16 roc Minimalistic implementation for calucating ROC curves. ArmandDS rpackage ArnaudBu G2SE ESG library for R based on the G2++ model ArnaudBu ReservingLad R package for reserving in non life insurance ArnaudBu esg2 R package for economic scenarios generation with a g2++ model ArnaudDroitLab RJMCMC RJMCMC: Genome-Wide Nucleosome Positioning in R ArnaudDroitLab RJMCMCNucleosomes Bioconductor Package - Genome-Wide Nucleosome Positioning in R with an optimized section in C++ ArnaudDroitLab consensusSeekeR Bioconductor Package - Detection of consensus regions inside a group of experiments using genomic positions and genomic ranges ArnaudDroitLab ef.utils Utility functions for R ArnaudDroitLab nucleoSim Bioconductor Package - Simulate synthetic nucleosome maps Arothron Arothron Tools for Geometric Morphometrics Arothron ctrlR Functions, examples and tools in Geometric Morphometrics ArtemSokolov linproj Linear Projection Methods Arthas1121 Battery_project ArthurS90 RTutorEmissionTrading RTutor Problemset about Emmission Trading and Innovation Arthurhe Lightbulb Single cell analysis suite ArtificialBreeze AssayCorrector The AssayCorrector eliminates spatial bias in HTS assays using PMP methods. ArtificialBreeze DrSanta DrSanta ArtificialBreeze whitespace Whitespace compiler in R ArtificialBreeze wolfRamalpha Wolfram Alpha <=> R packaged from @sebkopf Artjom-Metro ggsignif Easily add significance brackets to your ggplots Artjom-Metro tidygenomics Tidy Verbs for Dealing with Genomic Data Frames Arubaruba moodle_event_frequency Takes log data from Moodle and generates graphs indicating how frequently events occurred. Arubaruba moodlelogstore Analyses Moodle Logstore Data ArunabhaCodes CPBayes CPBayes (Bayesian meta analysis for studying cross-phenotype genetic associations) package AsaphA matchWeiz No description or website provided. AsexGenomeEvol AsexStats R package with handy functions for analysis of asexual arthropods AsgerAndersen t.test.clustered t test and its power in a cluster randomized design AsgerAndersen t_test_clustered t test and its power in a cluster randomized design AshTai CloneDeMix A two-way mixture Poisson model for the deconvolution of read-depth information and inferred the subclonal copy number of each target region, mutational cellular prevalence (MCP), subclone composition. AshwinAgrawal16 BiodiversityGSoC17 Integrating biodiversity data curation functionality. AshwinAgrawal16 GSoC2017Biodiversity Integrating biodiversity data curation functionality. AshwiniKV fdclust Functional distributional clustering AshwiniKV visTree Visualization of subgroups for decision trees AstraZeneca blueprint AstraZeneca pmworkbench AstraZeneca pmxplore Ather-Energy ggTimeSeries Time series visualisation AthilaRocha MetaTun-robust-v4 AthilaRocha iracex Athospd bitfinex Bitfinex API interface for R Athospd forkliftr R Package to stack tabular files. Athospd glmd Giba Package Athospd submissao_de_exercicios Athospd testeTravis aprendendo a usar travis em pacotes AtlanticR bio.base AtlanticR bio.bathymetry AtlanticR bio.coastline AtlanticR bio.groundfish AtlanticR bio.polygons AtlanticR bio.spacetime AtlanticR bio.substrate AtlanticR bio.taxonomy AtlanticR bio.temperature AtlanticR bio.utilities AtlanticR lbm AtlasOfLivingAustralia ALA4R This is a project to enable the R community to access data and resources hosted at Atlas of Living Australia (ALA). The goal is to enable outputs (e.g., observations of species) to be queried and output in standard formats. Atulfortune tt Auburngrads AFIT Auburngrads jkf Jason Freels' personal helper functions Auburngrads learningCurve Auburngrads publicLibs Auburngrads teachingApps Collection of shiny apps for teaching R, statistics, or anything else AugustT BatUAV A repository of code, in the form of an R package, for working with BatUAV data Aulide81 estadisticos Análisis descriptivo AustralianAntarcticDataCentre antanym R package for Antarctic geographic placenames AustralianAntarcticDataCentre availability Estimating geographic space available to animals based on telemetry data AustralianAntarcticDataCentre datemoss R package for radiocarbon dating of moss samples AustralianAntarcticDataCentre raadsync AustralianAntarcticDataCentre zigam AustralianAntarcticDivision EchoviewR The R package EchoviewR - a free interface between Echoview and R using COM scripting. AustralianAntarcticDivision aceecostats AustralianAntarcticDivision bgmfiles Example BGM Files for the Atlantis whole-of-ecosystem model AustralianAntarcticDivision blueant AustralianAntarcticDivision bowerbird Keep a collection of sparkly data resources AustralianAntarcticDivision fishnostics Diagnostic plots for fisheries assessment models AustralianAntarcticDivision fishtools Generic tools for the analysis of fisheries data AustralianAntarcticDivision footprint AustralianAntarcticDivision migrate Estimate the migration rate between two areas from tagging and population data AustralianAntarcticDivision orsifronts Orsi fronts of the Southern Ocean AustralianAntarcticDivision palr useful palettes for plotting data AustralianAntarcticDivision raadfiles AustralianAntarcticDivision raadtools Tools for Synoptic Environmental Spatial Data AustralianAntarcticDivision raadtools.examples AustralianAntarcticDivision rbgm R tools for Box Geometry model files AustralianAntarcticDivision sospatial Southern Ocean map resources AustralianAntarcticDivision stab simulation tools for spatial tag abundance models AustralianAntarcticDivision tagsim Simple population model for tag-based simulations AveraSD nof1_rnaseq AviBlinder rtrends AviBlinder tsSelect tsSelect R Package - Select the best forecast among several models. The package is implemented in AvinashAcharya Test_factorAnalytics Test Package for R package- factorAnalytics AvinashAcharya factorAnalytics_Avinash Avipsa1 Sensebox Data visualisation of Sensebox using R shiny Avsecz fitbitr fitbitr: An R Interface To The Fitbit API Ax3man phylopath Perform phylogenetic path analysis in R. Ax3man trackr Analyze and Visualize Tracking Data Ayan1 Cell-Trajectory-Analysis No description or website provided. AybarCL Dorado Spatial estimation of mean temperature and precipitation AybarCL PISCOrain Methods and classes for rain spatial interpolation AybarCL SONICS Seguimiento de la Escorrentía y PP a nivel nacional AybarCL fars Peer-graded Assignment: Building an R Package Azure AzureDSVM AzureDSVM is an R package that offers convenient harness of Azure DSVM, remote execution of scalable and elastic data science work, and monitoring of on-demand resource consumption. Azure doAzureParallel A R package that allows users to submit parallel workloads in Azure Azure rAzureBatch A HTTP proxy library written in R for Azure B-Davis bdavis BAAQMD CalEnviroScreen CalEnviroScreen data in native R format BAAQMD copydat Copy R data to clipboard BANOVAapp BANOVA_R BCable Rdicejobs Dice.com API Interface as an R package BD2K-DDI ddiR An R package to access to Omics Discovery Index API BEAST2-Dev rbeast2 BERENZ MapOfPoland Map of Poland BERENZ MiscFuns Various functions BERENZ R-in-official-statistics BERENZ RISQ Codes from RISQ project adapted to R package BGI-LuoWen lwlegopt lwlegopt is used for the data processing of cancer genomes BIC-MNI mni.cortical.statistics Regression analyses on the surface BIMIB-DISCo TRONCO Repository of the TRanslational ONCOlogy library, which includes various algorithms such as CAPRESE and CAPRI. BIMSBbioinfo AmpliconBiSeq R package for Amplicon bisulfite-sequencing BIMSBbioinfo RCAS R package for the RNA Centric Annotation System (RCAS) BIMSBbioinfo ciRcus An R package for annotation of circular RNAs BIMSBbioinfo genomation R package for genomic feature analysis and visualization BIMSBbioinfo netSmooth netSmooth: A Network smoothing based method for Single Cell RNA-seq BIMSBbioinfo reg2gene BIMSBbioinfo slimR Short Linear Motif (SLiM) Analysis in the context of human diseases BKoblinger writersexchanger writersexchanger: Automates routine processes and data analysis of volunteer information Writers Exchange BMPersson hockeyStats BMumphrey TSE TSE BPJandree AutoGLM This is an R package for automated GLM models that can handle large datasets. Supports linear, logit and probit models. BPJandree GOSTlibs R package building tutorial for the World Bank Geospatial Operations Support Team BPJandree optMaxlik R package for minimization of Kullback-Leibler divergence of custom likelihood functions. BPJandree zstats C/c++ accelerated zonal statisitcs with out of the box multiprocessing BRL-BCM MolEndoMatch An R package for molecular endophenotype patient matchmaking. BSDStudios ethr An Ethereum package for R BST262 Linreg BaileyLabUM biosensor BaltiBoix ShinyTemperature Shiny project for devdataprod Coursera BaltiBoix shinyCORES RStudio Shiny Project for showing CORES data interactively Bandytwin simER R Package for Simulating ER Networks BarkleyBG causalsandwich Simple implementation for estimating causal effects with M-estimation and sandwich variance estimators BarkleyBG clusteredinterference Estimators for Causal Inference for Observational Studies with Clustered Interference Bart6114 artyfarty ggplot2 theme + palette presets Bart6114 dimple dimple charts for R Bart6114 infuser infuser is a simple and very basic templating engine for R Bart6114 jug jug: A Simple Web Framework for R Bart6114 jug.parallel Parallel processing plugin for jug Bart6114 licorice plot Likert-like data using the ggplot2 plotting engine Bart6114 simmer Discrete Event Simulation for R Bart6114 simmer.optim Bart6114 sparklines A sparkline htmlwidget for R using jQuery Sparklines BartBroeckx Mendelian R package Mendelian BartBroeckx configfiles Bartesto BARTpkg RSSA utility functions Bartesto RSSApkg Utility scripts for remote sensing and spatial analysis work BastilleRousseau lsmnsd lsmnsd R package BastilleRousseau moveNT A R package for the analysis of movement data using network theory BattaLiu HW8 BattaLiu HW8JiayiLiu BattaLiu tempest What the Package Does (Title Case) BatzoglouLabSU SIMLR Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch) BauerMichael PesPila A tool to predict the outcome of football matches in Europe. BauerMichael max-min-hill-climbing-algorithm An algorithm to generate DAGs (directed acyclic graphs) from observational data. BavoDC AGREL Package for calculating agreement and reliability BavoDC CalibrationCurves The package with the val.prob.ci.2 code, formerly called the val.prob.ci.2 package. BavoDC ClassificationPlot Package to visualize the performance of a (logistic) prediction model at different cutoffs. BavoDC Multivariate BavoDC package.val.prob.ci.2 The package with the val.prob.ci.2 code BayerSe esback Expected Shortfall Backtesting BayerSe esreg The goal of esreg is to simultaneously model the quantile and the expected shortfall of a response variable given a set of covariates. BeautyOfWeb ANF Affinity Network Fusion BeautyOfWeb HarmonizedTCGAData Beirnaert MetaboMeeseeks BejaouiSayf MatchItShiny BejaouiSayf PbGit BellaLiu112 dataTest this is only a test BellaLiu112 dataTools Ben-Cossins LazyCircos Create the configuration files for generating circos from genelists BenBarnard EqualCov Tests for Equality of Covariances BenBarnard GradSchoolReport Graduate School Reports using Shiny and R markdown BenBarnard Reports Graduate School Reports using Shiny and R markdown BenBarnard covEst Covariance Matrix Estimators BenBarnard covEstR Covariance Matrix Estimators BenBarnard covTestR Tests for Covariance Matrices BenBarnard covTests Tests for Homogeneity of Covariance Matrices BenBarnard hldr Heteroscedastic Linear Dimension Reduction BenBarnard likelihoodExplore Exploration of Different Likelihood Based Tests BenBarnard pdfposter R Markdown pdf poster template BenBarnard rWishart Random Wishart, psuedo Wishart and singular Wishart generation. BenBarnard slidR BenBarnard wishart Random Wishart, psuedo Wishart and singular Wishart generation. BenGraeler spcopula BenjaK pairing Provides the Cantor and Hopcroft-Ullman pairing functions. BenjaK scanstatistics An R package for space-time anomaly detection using scan statistics. BenjaminAdelaide CHARGE CHromosome Assessment in R with Gene Expression data (CHARGE) BenjaminAdelaide msgbsR R package to analyse methylation sensitive genotyping by sequencing (MS-GBS) data BenjaminChittick BenCScore BenjaminChittick Plate-Based-Diversity BenjaminPetry RUtilLibrary Utility functions for descriptive statistics BenjaminSchool BenRUtils Benli11 rPCA Randomized Principal Component Analysis using R Benli11 rSVD Randomized Matrix Decompositions using R Beothuk bio.base Beothuk bio.bathymetry Beothuk bio.coastline Beothuk bio.datawrangling Facilitates the extraction and handling of data from various sources, including groundfish, observer, marfissci and other sources Beothuk bio.plotting Beothuk bio.polygons Beothuk bio.spacetime Beothuk bio.substrate Beothuk bio.survey Beothuk bio.taxonomy Beothuk bio.temperature Beothuk bio.template Beothuk bio.utilities BergelsonLab blabr BergelsonLab seedlings R package for working with the SEEDLingS corpus BerylZhuang helper_functions some helper functions for my project BetaAndBit BetaBitRgame The english version of R package with Beta and Bit games BetaAndBit BetaBitRgra BetaAndBit BetaBitSagaDane Datasets and functions from ,,Beta Bit'' stories for kids [R package] BetaAndBit BetaBitTools Narzędzia do tworzenia pakietów / opowiadań / wykresów z serii Beta i Bit Betsy010 myPackage2 myPackage2 BeyondCore-Inc r-scripts BfRstats rrisk This R package provides the whole functionality of the rrisk project developed by the Federal Institute for Risk Assessment (BfR) BfRstats rriskBayes2 R package for fitting Bayesian models with JAGS. Zero-inflated negative binomial, zero-inflated Poisson and prevalence estimation under misclassification (PEM) BfRstats rriskDistributions Fitting Distributions to Given Data or Known Quantiles BgeeDB BgeeDB_R An R package for Bgee database BhaktiDwivedi GISPA Method for Gene Integrated Set Profile Analysis BigBorg MiBand_R_Package R package for MiBand data analysis BigelowLab blastxml Extract data from Blast XML files BigelowLab configurator Simple configuration file (INI) handling in R BigelowLab dismotools R: extra tools for the raster and dismo packages. BigelowLab ecomon R tools for reading and querying Ecomon datasets BigelowLab flowcamr R utilities for working with FlowCam data BigelowLab genologicsr API wrapper for GLS API v2 BigelowLab gittools gittools is a set of wrappes around various git commands such as `git grep` BigelowLab menssp Access, query and download from RESTful Maine DMR ESRI Map Service. BigelowLab nam218 A simplified R interface to NOMADS NAM Grid 218 forecasts and archives BigelowLab namanl A simplified R interface to NOMADS NAM-ANL forecast data and archives BigelowLab ndfd A RESTful R interface to the NWS National Digital Forecast Database BigelowLab nearth R tools for easy navigation and reading of locally stored data files from [Natural Earth](http://www.naturalearthdata.com/) BigelowLab neracooscrawler A limited THREDDS crawler for programmatically working with NERACOOS thredds server BigelowLab nssp Access, query and download from RESTful Maine DMR ESRI Map Service. BigelowLab obpgcrawler A limited THREDDS crawler for programmatically working with the OpeNDAP data offerings from http://oceandata.sci.gsfc.nasa.gov/opendap/ BigelowLab obpgtools R tools for use with raster data originating from the Ocean Biolog Processing Group BigelowLab plateLayout R tools for working with plate (tray) layout definitions in LIMS. BigelowLab rscripting Simple tools for scripting with Rscript BigelowLab sinkrtools Handy tools for working with sinkr package BigelowLab spnc A simplified interface between spatial classes and NetCDF data sources. BigelowLab stsaav Standard Time Series Analysis and Visualization BigelowLab threddscrawler A generic THREDDS crawler for R BillPetti baseballr A package written for R focused on baseball analysis. Currently in development. BillPetti fgrapher Package for making graphs using data available in the FanGraphs database BillPetti ggallup This package loads custom ggplot themes and palettes that make creating graphs in R consistent with Gallup brand standards easier BillShipley CauseAndCorrelation package for path analysis course Bio-Core BioCore.Annotation A R package for annotating and filtering NGS variant data Bio7 RIJ1 An R package to use the ImageJ2 API BioAcoustica BioAcoustica BioAcoustica BioAcousticaR-tools Toolset for bioacoustics that can be used with or without BioAcoustica. BioAcoustica bioacousticaR R package to access BioAcoustica BioAcoustica orthophonia Prototypical R package to extract features and classify orthoptera songs BioAimie dateManip An R package that manipulates dates and handles date-sparse data frames BioHPC LONGO Gene Length-Dependent Expression Analysis Tool in Neuronal Cells BioPAX paxtoolsr The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database BioSSA BioSSA BioSSA LinearInterpolator BioScientist RemTools Data Analysis for Soil and Groundwater Remediation BioShock38 TESS3_encho_sen TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics. BioShock38 abc BioShock38 adaptive-introgression BioShock38 pcadapt pcadapt has been developed to detect genetic markers involved in biological adaptation. pcadapt provides statistical tools for outlier detection based on Principal Component Analysis (PCA). BioStaCs BSCgas Greedy AUC stepwise BioStatMatt sas7bdat A reverse engineering of the sas7bdat database file format BioStatMatt sas7bdat.parso Read sas7bdat files in R using the GGASoftware Parso library. BioStatMatt yarr BioTesseract ProtLigR Macromolecules and ligands visualization in R Bioconductor AWSParallel Parallel evaluation using AWS infrastructure for Bioconductor objects Bioconductor AnnotationDbi Annotation Database Interface Bioconductor AnnotationFilter Facilities for Filtering Bioconductor Annotation Resources Bioconductor AnnotationFilters Facilities for Filters Bioconductor Annotation Resources Bioconductor AnnotationForge Code for Building Annotation Database Packages Bioconductor AnnotationHub Client for the Bioconductor AnnotationHub web resource Bioconductor AnnotationHubData Transform public data resources into Bioconductor Data Structures Bioconductor BSgenome Software infrastructure for efficient representation of full genomes and their SNPs Bioconductor BigDataAlgorithms Algorithms for working with large, especially disk-based or sparse, data Bioconductor Biobase Biobase: Base functions for Bioconductor Bioconductor BiocCaseStudies BiocCaseStudies: Support for the Case Studies Monograph Bioconductor BiocCheck Bioconductor BiocCheck.old Bioconductor BiocContributions Bioconductor BiocEMBO2015 Course material for EMBO / EBI course, Hinxton, UK, October 2015 Bioconductor BiocFileCache Manage Files Across Sessions Bioconductor BiocGenerics S4 generic functions for Bioconductor Bioconductor BiocInstaller Install / Update Bioconductor, CRAN, and github Packages Bioconductor BiocInstaller_release Bioconductor BiocIntroRPCI Course material for RPCI introductory course Bioconductor BiocParallel Bioconductor facilities for parallel evaluation Bioconductor BiocStyle Issues and pull requests for BiocStyle should go here. Bioconductor Biostrings Efficient manipulation of biological strings Bioconductor Category Category Analysis Bioconductor CoCiteStats Different test statistics based on co-citation. Bioconductor DDayChallenge A simple package containing get-to-know-you challenges related to efficient R code Bioconductor DelayedArray Delayed operations on array-like objects Bioconductor DynDoc Dynamic document tools Bioconductor ENAR2016 Introduction to High Throughput Data Analysis Using R / Bioconductor Bioconductor ExperimentHub Client to access ExperimentHub resources Bioconductor ExperimentHubData Add resources to ExperimentHub Bioconductor GOstats Tools for manipulating GO and microarrays. Bioconductor GSE62944 TCGA re-processed RNA-Seq data available as GSE62944 from GEO Bioconductor GSEABase Gene set enrichment data structures and methods Bioconductor GeneMeta MetaAnalysis for High Throughput Experiments Bioconductor GenomeInfoDb Utilities for manipulating chromosome and other 'seqname' identifiers Bioconductor GenomicAlignments Representation and manipulation of short genomic alignments Bioconductor GenomicDataCommons Provide R access to the NCI Genomic Data Commons portal. Bioconductor GenomicFeatures Tools for making and manipulating transcript centric annotations Bioconductor GenomicFileViews Views across multiple files Bioconductor GenomicFiles Distributed computing by file or by range Bioconductor GenomicRanges Representation and manipulation of genomic intervals and variables defined along a genome Bioconductor GoogleGenomics An R package for Google Genomics API queries. Bioconductor HDF5Array HDF5 back end for DelayedArray objects Bioconductor IRanges Infrastructure for manipulating intervals on sequences Bioconductor Icens NPMLE for Censored and Truncated Data Bioconductor KEGGREST Client-side REST access to KEGG Bioconductor MotifDb An Annotated Collection of Protein-DNA Binding Sequence Motifs Bioconductor MultiOmicQC Quality Control Measures for MultiOmics Experiments via MultiAssayExperiment Bioconductor Organism.dplyr Bioconductor OrganismDbi Software to enable the smooth interfacing of different database packages Bioconductor RGalaxy Make an R function available in the Galaxy web platform Bioconductor RaggedExperiment Bioconductor S4Vectors S4 implementation of vector-like and list-like objects Bioconductor SOUNDBoard Statistically-informed Multi-Omics Reports for Tumor and Other Boards Bioconductor ShortRead Bioconductor SplicingGraphs Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them Bioconductor SummarizedExperiment SummarizedExperiment container Bioconductor TENxBrainData An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set. Bioconductor UniProt.ws R Interface to UniProt Web Services Bioconductor UseBioconductor Training material for intermediate R / Bioconductor courses Bioconductor VariantAnnotation Annotation of Genetic Variants Bioconductor VariantExperiment Represent gdsfmt using standard SummarizedExperiment metaphor. Bioconductor YouTube Bioconductor annotate Bioconductor bioDist Different distance measures Bioconductor biocReleaseMgr Bioconductor biocViews Categorized views of R package repositories Bioconductor chipseq chipseq: A package for analyzing chipseq data Bioconductor docker.workshop Materials for Docker workshop at BioC2015 conference Bioconductor ensemblVEP R Interface to Ensembl Variant Effect Predictor Bioconductor geeni Parallel implementation of generalized estimating equations (GEE) in bounded memory Bioconductor genefilter genefilter: methods for filtering genes from high-throughput experiments Bioconductor geneplotter Graphics related functions for Bioconductor Bioconductor generics Bioconductor gpls Classification using generalized partial least squares Bioconductor graph graph: A package to handle graph data structures Bioconductor hypergraph A package providing hypergraph data structures Bioconductor orgtest Bioconductor ppiStats Protein-Protein Interaction Statistical Package Bioconductor spbtest3 Test package for the Single Package Builder Bioconductor spbtest4 test package for single package builder BioinfoMonzino DaMiRseq BioinformaticsFMRP TCGAWorkflow TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages BioinformaticsFMRP TCGAWorkflowData Example data to TCGAWorkflow BioinformaticsFMRP TCGAbiolinks TCGAbiolinks BioinformaticsFMRP TCGAbiolinksData TCGAbiolinks auxiliary data package BioinformaticsFMRP TCGAbiolinksGUI TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/ BioinformaticsFMRP TCGAbiolinksGUI.data Data package for TCGAbiolinksGUI BioinformaticsFMRP f1000_TCGA_Workflow TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages BiologicalRecordsCentre BRCindicators An R package for creating indicators from trends data BiologicalRecordsCentre Pantheon BiologicalRecordsCentre PlantPortal BiologicalRecordsCentre UKBMS-online BiologicalRecordsCentre eBMS BiologicalRecordsCentre rYoutheria Access to YouTheria through R BiologicalRecordsCentre sparta Species Presence/Absence R Trends Analyses BiostatQian ASAFE This repos implements the ASAFE EM algorithm described in this paper: Zhang QS, Browning BL, and Browning SR (2016) “Ancestry Specific Allele Frequency Estimation.” Bioinformatics. Please see the website for this repo for an introduction to ASAFE: Biostatistics4SocialImpact RSTKAP R implementation of the Spatial-Temporal Kernel Averaged Predictor (STKAP) model Biostatistics4SocialImpact dlm An R package to fit distributed lag models using lme4 Biostatistics4SocialImpact rstkap R implementation of the Spatial-Temporal Kernel Averaged Predictor (STKAP) model BitEcology DTK Package for conducting pairwise comparison tests without assuming equal variance or equal sample sizes. BitEcology cleanR An R package for reducing code to the essentials for sharing and curating projects. Bjerring BEWESO BEWESO R package Bjerring RISpackage2 This is the RIS-package Bjerring openCPU Bjerring rispackage3 Bjerring rispackage4 BlackEdder mcmcsample Work with posterior samples in R Blakemassey baear baear: Package for Bald Eagle telemetry data manipulation, analysis, and plotting Blakemassey gisr gisr: Package for geospatial data editing, manipulation, and plotting Blakemassey ibm An individual-based model (IBM) simulation framework for R Blakemassey ibmr ibmr: Package of an individual-based modeling (IBM) framework for R BlasBenito IgnexCompare Tools to compare pollen sequences (work in progress) BlasBenito IgnexTaxonomy R code of the IgnexTaxonomy package Blaza scmc SCMC sampler for R Blaza ssoftveR Support package for the project for statistical software course. Blikdal Examchha511 Blikdal Examchha511sync Blitzy29 R.Maps Blitzy29 R.PersonalTools Blitzy29 R.TextMining Text mining tools for R Blitzy29 TextMiningTools Text mining tools for R Bnocular bnocular sample bnocular data BoardGameSimulator HootOwlHoot An R package to simulate the board game Hoot Owl Hoot! BobHarper1 rxni R package to use NI GP Prescribing data Bohdan-Khomtchouk geneXtendeR R/Bioconductor package for optimized functional annotation of ChIP-seq data Bohdan-Khomtchouk geneXtendeR_keepme R/Bioconductor package for histone modification ChIP-seq analysis Bohdan-Khomtchouk gtf R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies Bohdan-Khomtchouk happybiRthday Calculate upcoming birthday dates of Github repos Bohdan-Khomtchouk peaX Human ChIP-seq peaks data for ENCODE and ROADMAP Epigenomics Boldemeyer MYTSBE Multi Year Time Stratified Bayesian Estimator BonnyRead BonnyReadWorking Boodogs zoon-clone BorisLS WhatsAppR R Package with functions for importing and analysing WhatsApp chat histories Boshoffsmit Mypackage The addFunction Boshoffsmit addFunction Boshoffsmit dependTest Boshoffsmit getTest Boshoffsmit novaFire Boshoffsmit novaReport BoulderCodeHub CRSSIO R Package to manage code for maniuplating the I/O for CRSS. BoulderCodeHub CoRiverNF R data package for Colorado River Natural Flows BoulderCodeHub RWDataPlyr R package to read and manipulate data from RiverWareTM BoyaoZhang Hello-World BoyaoZhang data516 Data 516 BradHubley EA BradHubley OffshoreClams BradHubley SpatialHub Survey design and spatial analysis of fisheries data BrainVR brainvr-reader R scripts to read and preprocess files created by brainvr framework or data with similar structure Braja93 braja Econometrics Brattle BrattleExtras BrattleExtras package for R BrendelGroup BWASPR R functions and scripts to process output from the BWASP workflow BrendelGroup TSRchitect Promoter identification from diverse types of large-scale TSS profiling data BrianWeinstein googlenlp An Interface to Google's Cloud Natural Language API BrnCPrz PedyR R package to deal with pedigrees. BroVic myRStuff ...some handy functions I use BroVic naijR R package on Nigeria and for Nigeria BruceKendall FlowFishFishing R package to support simulations of coastal fisheries BruceKendall PVA A package for doing Population Viability Analysis in R BruceKendall ignorant-conservation Research on reserve design to protect unmapped species BruceZhaoR mypkg Learn to develop a R package BrunoVilela FARM Functions for the human simulation on farming spread BrunoVilela letsR Package letsR BrunoVilela sampler Functions to generate overdispersed and aggregated sampling designs in the geographic, phylogenetic or any trait/variable space. Btibert3 prismaticR A simple interface to the Prismatic API Btibert3 ripeds An R data package containing NCES IPEDS survey files Btibert3 scorecardR R package to access the Dept of Ed College Scorecard API Burke-Lauenroth-Lab Rsoilwat A R plugin for soilwat. Burke-Lauenroth-Lab SoilWat_R_Wrapper Burke-Lauenroth-Lab rSFSW2 rSFSW2: A R package to create soil water balance simulation experiment Burke-Lauenroth-Lab rSOILWAT2 A R plugin for soilwat. BushmanLab LDppA Latent Dirichlet Process Prior Allocation BushmanLab PLEASE BushmanLab hotROCs ROC curve area matrix and heat map BussemakerLab SelexGLM ByronAnalytics TODO_Addin RStudio addin generates TODO list for active project. C3S GEMATariff R package and shiny app to calculate various GEMA tariffs C3c6e6 SetRank An R package for advanced gene set enrichment analysis on the results of genomics experiments. CAMCOS camcos2017 camcos2017 CAPLTER capeml CAP LTER package for generating EML metadata CBIIT rcellminer CC-HIC ccanonym Critical care data anonymisation package CC-HIC ccdata The historical version of cleanEHR CC-HIC cleanEHR Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC CCAWR SNU-CAHL Seoul National University - Climate Change Impact Assessment for Hydrology Library (SNU-CAHL) - http://ccawr.snu.ac.kr CCS-Lab hBayesDM An R package for hierarchical Bayesian modeling of RLDM tasks. CCprofiler CCprofiler CDEager bmers An R package for fitting maximal Bayesian mixed effects regressions with weakly informative priors in Stan. CDEager maxmer An R package for fitting mixed effects regressions with maximal random effects structures CDEager nauf Regression with NA Values in Unordered Factors CDEager standardize Tools for Standardizing Variables for Regression in R CEDUSER HCSSoftAnalysis This is a framework to purpose statistical analysis for the high content screening data. CFWP rags2ridges Get ridge or die trying - 2 cents CG1122 DAL CIAssetManagement FundTools This repository has the purpose to keep the necessary tools to develop the investment strategies. CIAssetManagement QuantTools This repository has the purpose to keep the necessary tools to develop the investment strategies. CIM1WS1718 test-BodoBurger test-BodoBurger created by GitHub Classroom CIP-RIU brapiTS BrAPI Test Server CIP-RIU eda4plant :construction: Exploratory Data Analysis for plant breeding experiments. CIP-RIU fbanalysis Interface package for HiDAP analysis CIP-RIU fbcheck Fieldbook check CIP-RIU fbdesign CIP-RIU fbmlist Module for Managment and Generation of germoplasm list CJB2014 rfm CJBarry AnTrans Analytical solution for Contaminant Transport in Groundwater CJBarry DNAPL DNAPL Source Term Framework CJBarry DRW Dynamic Random Walk CJBarry MassTrack CJBarry Rflow Tools for analysing and writing input and output files for USGS MODFLOW in R CJBarry coalesce Organise a field of weighted particles into groups. CJBarry td Day numbering system CLippmann ORA Overrepresentation Analysis R package CMET-UGent MicroRaman MicroRaman is an R package to process microbial flow cytometry data CMPE239 BikeSharePrediction CMPE 239 Project - Fall 2015 CMPG flint Functional linkage test CMPG signet An R package to detect selection in biological pathways COMBINE-lab wasabi Prepare Sailfish and Salmon output for downstream analysis COMHIS bibliographica Tools for bibliographic data analysis COMHIS ecco-shinyapps COMHIS estc ESTC analytics CRC1266-A2 moin Modeling Interactions using gravity and entropy maximizing approaches CRUKMI-ComputationalBiology twoddpcr CSAFE-ISU bulletr Analyze bullet striations using nonparametric methods CSAFE-ISU handwriter Forensic Handwriting Analysis Pipeline in R CSAFE-ISU shoeprintr R package to perform a matching analysis of two shoeprints CSAFE-ISU solefinder CSBLatvia surveyplanning CSBLatvia vardpoor R package for variance estimation in survey sampling CSHS-hydRology CSHShydRology Main package CSISdefense csis360 Data analysis tools oriented towards open source government data sources for use by the Center for Strategic and International Studies CSISdefense hamre a package of frequently-used functions for CSIS data analysis and visualization CSJCampbell WMTools Tools for simulating activations in Warmachine(R) CSJCampbell WTCTools Warmachine World Team Championships Player and List Rankings CSJCampbell throwdown play pairing game CT-Data-Haven acsprofiles R package for making profiles of ACS data CTNL IETTAnalyzer Analyze trajectory data (GPS) and get bus route information in Istanbul, Turkey. CTTV ropentargets R client package for Open Targets REST API CY-dev sparseSVM Solution Paths of Sparse Linear Support Vector Machine with Lasso or ELastic-Net Regularization Caetanods ratematrix Bayesian estimation of the evolutionary rate matrix. Cagoeller African_name_generator A simple random number generator to give you your South African name! Caleb-Huo AWFisher fast computing for adaptively weighted fisher's method Caleb-Huo BayesMP R package for Bayes Meta Pattern Caleb-Huo BayesMPSimulation host code for BayesMPSimulation Caleb-Huo ClustersSimulation For generate correlated gene expression structure Caleb-Huo ExpRPkg Try an example how to make R package using Github Caleb-Huo IS-Kmeans Github repository for IS-Kmeans Caleb-Huo MIS-Kmeans Meta-analytic integrative sparse Kmeans Caleb-Huo MetaSparseKmeans Caleb-Huo RRHO2 improve the original RRHO package Caleb-Huo genomicLibrary commonly use R function in genomic studies Caleydo lineup_htmlwidget HTMLWidget wrapper of LineUp for Visual Analysis of Multi-Attribute Rankings :speech_balloon: @sgratzl California-Data-Collaborative RateComparison Easily compare the revenue, equity, and demand implications of different water rate structures. California-Data-Collaborative RateParser Interpret OWRS files and calculate water bills. CambridgeAssessmentResearch KernEqWPS Kernel Equating Without Pre-Smoothing CambridgeAssessmentResearch POSAC Partial Order Scalogram Analysis with Base Co-ordinates CamdenCoalitionOfHealthcareProviders SimulateNames Package to simulate names and addresses CamdenCoalitionOfHealthcareProviders caplist R package used to clean Camden Coalition patient lists CancerInSilico CancerInSilico An Rpackage containing a cell-based model written in C CancerRxGene gdscDataR Package to be used in conjunction with the output of GDSC nlme logistic dose response model. CancerRxGene gdscIC50 An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project. CancerRxGene gdscdata R package containing the GDSC version 17 data set CannaData CannaConnect CannaData CannaFrontDesk Front Desk Shiny Application CannaData CannaFrontdesk Front Desk Shiny Application CannaData CannaInventory Inventory Shiny Application CannaData CannaLeafDataSystems R wrapper for Leaf DataSystems API CannaData CannaMenu CannaData CannaMetrc R wrapper for Metrc API CannaData CannaModules CannaData CannaPOS Point-of-sales Shiny Application CannaData CannaQueries Queries for CannaData CannaData CannaSelectize CannaData CannaSettings CannaData CannaSignup Signup Shiny Application CannaData CannaStaff CannaData CannaSurvey CannaData docuSignr docuSign API CannaData googlePrintr Connect to Google Print API https://developers.google.com/cloud-print/docs/sendJobs CannaData mailgunr mailgun API for R CannaData parsleyr Wrapper for parsley.js CannaData shinyBarcode Wrapper for JsBarcode CannaData shinyCAPTCHA Shiny module for google reCAPTCHA V2 CannaData shinyCleave Adds Cleave.js functionality to Shiny inputs CannaData shinyFullPage Wrapper for 'fullpage.js' CannaData zintr Print barcodes in R Carbonfreezer cowbell Initial version CarlBoneri RtAce CarlBoneri Rterial rterial is an R package based on material design for building widgets and web applications CarlBoneri autorox Functions for generating properly formatted documentation for publishing R packages. CarlBoneri cloud2 CarlBoneri cloud3 An attempt as complete cloud build CarlBoneri gendr CarlBoneri master-server CarlBoneri mtace CarlBoneri rRunway rRunway CarlBoneri reportr CarlBoneri republicr CarlBoneri rmory CarlBoneri roxydoc2 CarlBoneri rprizm CarlBoneri rsecure R package for encrypting data objects based off of the PKI package CarlBoneri rtillery A set of useful and globally used functions in new package development and working at the command line CarlBoneri rtspecs Specs and Assets for rterial CarlBoneri shinyone CarlBoneri taskr A series of workflow tools for building R packages and managing projects CarlBoneri whyles-shiny-server CarlBrunius batchCorr Within and between batch correction of LC-MS metabolomics data CaroKlatschmohn TippingSens TippingSens CarolinaEuan HMClust Carolusian themepubr A ggplot2 theme CarragherLab ImageXpressR R package for extracting metadata from ImageXpress file paths CasAndreu ccceR This is an R package that allow researchers of the Center for Communication and Civic Engagement (CCCE) at the University of Washington to analyze and study social media data. CatchDat TravelAIR CatherineAmmann Regression A technique for determining the statistical relationship between two or more variables where a change in a dependent variable is associated with, and depends on, a change in one or more independent variables. CatherineAmmann regression A technique for determining the statistical relationship between two or more variables where a change in a dependent variable is associated with, and depends on, a change in one or more independent variables. Cattes R-LOTUS Implementation of the LOTUS algorithmy form Prof. Loh and Kin Yee Chan CavenderBaresLab spec CeON rJavaPackageExample An example R package project that uses code written in Java CellH5 cellh5-R R-package providing for highlevel read access to cellh5-files CellProfiler cytominer Library for mining patterns in perturbation data CellProfiler cytominr Library for mining patterns in perturbation data CenterForAssessment Literasee Assessment Literacy content development via R CenterForAssessment RLImatrices Historical baseline matrices for RLI SGPt analyses CenterForAssessment SGP Functions to calculate student growth percentiles and percentile growth projections/trajectories for students using large scale, longitudinal assessment data. Functions use quantile regression to estimate the conditional density associated with each student's achievement history. Percentile growth projections/trajectories are calculated using the coefficient matrices derived from CenterForAssessment SGPdata The R package SGPdata contains three data sets utilized by the SGP Package as exemplars for users to set up their own data for SGP analyses. CenterForAssessment packagePages Customized pkgdown clone to create GitHub pages for R packages & projects CenterForAssessment randomNames Function to generate random gender and ethnicity correct first and/or last names. Names are chosen proportionally based upon their probability of appearing in a large scale data base of real names. CenterForAssessment toOrdinal R package to convert cardinal to ordinal number equivalent CenterForOpenScience osfr R library for the Open Science Framework CenterForStatistics-UGent RCM A new model-based visualization method for microbiome data CenterForStatistics-UGent pim R package for probabilistic index models CenterForStatistics-UGent unifiedWMWqPCR Bioconductor package of unified Wilcoxon-Mann-Whitney test for qPCR CentreForHydrology CRHMr R package for CRHM pre- and post- processing CentreForHydrology HYDAT R package to interface to Canadian Hydrometric Data (HYDAT) published by Water Survey of Canada CentreForHydrology Reanalysis R functions for reading and processing ERA, WATCH and NARR reanalysis data Cepesp-Fgv cepesp-r Cesar-Urteaga rfars Project that illustrates how to create an R package. Cesar-Urteaga rnoaa An R package to get, clean, and visualize earthquake data from the NOAA. ChaWM pwrAB Power Calculations for AB Testing ChadGoymer githapi User-friendly access to the GitHub API for R, consistent with the tidyverse. ChadGoymer github R package providing wrapper functions for the GitHub API ChadGoymer logr A very simple logging package for R ChadGoymer rfiles An R package of helper functions for file management Chaiji ChaijiExamST522 Chaiji LemilExamST522 Package created in group with Honguyen14 Chaiji temp2 Chainomics rCoinInterface Coinmarketcap Interface for R ChandlerLutz SynthHelpers Rcpp helper functions for Synthetic Control ChandlerLutz VARfunctions A collection of VAR functions ChandlerLutz crossplotr Easy cross-sectional plots with ggplot2 and cowplot ChandlerLutz ggts ggts R package for easy time series visualization ChandlerLutz ipopCpp Rcpp implementation of a Quadratic Problem Solver ChandlerLutz starpolish post-processing functions for stargazer output ChandlerLutz starpolishr Post-polishing of stagazer output ChandlerLutz tidyZillow To tidy zillow research data ChanningWong REcharts3 A R Interface to ECharts 3.0 ChanningWong ggecharts A R Interface to ECharts in ggplot Style Grammar ChaoranHu coga A Calculation of Convolution of Gamma Distributions ChardingRes FARSight Week 4 assignment for Building an R Package ChardingRes QuakeViz Assignment for Mastering Software Development in R CharlesCara Datastream2R This is a series of functions for downloading data from the Thomson Reuters DataStream DWE server, which provides XML access to the Datstream database of economic and financial information. CharlesCara DatastreamDSWS2R Functions and a R5 class that allows data to be downloaded and uploaded to the Thomson Reuters Datastream database via the DSWS server CharlesJB ENCODExplorer CharlesJB ENCODExplorer-release CharlesJB FantomEnhancers.hg19 CharlesJB FantomEnhancers.mm9 CharlesJB FantomTSS.hg19 CharlesJB GenomicFormatExamples CharlesJB GenomicTracks CharlesJB ProfilesMetagene CharlesJB bioc biocLite wrapper, for the lazy CharlesJB chipcompare CharlesJB heatmapHIV CharlesJB manhattan CharlesJB metagene CharlesJB metageneInputs CharlesJB metageneVignettes CharlesJB mirnatools CharlesJB mm10.mirna.annotations CharlesJB mpiGadem CharlesJB rTANDEM CharlesJB test Chathurga HyperChemoBridge Methods for converting between objects used by R packages HyperSpec and ChemoSpec CheilSeriMMM MMM_beta CheilSeriMMM MMMbeta ChemLibrarian DataProduct_projectUMLibrarySalary coursera class project Chen-Chaozong extraTechInds R package Provide useful Technical Indicators Chen-Chaozong extraquantstrat a R package provide extra functions of quantstrat Chen-Chaozong getwinddata a easy way to use wind r api ChenMengjie CAPIT ChenMengjie Citrus ChenMengjie SynthEx ChengMengli tf-idf ChengMengli topic Chicago RSocrata Provides easier interaction with Socrata open data portals http://dev.socrata.com. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SoDA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format. Manages throttling by 'Socrata'. Chicago sdp-feature-fetcher Software to extract and calculate features from various data sources for use in smart data platform (https://chicago.github.io/smart-data-platform/) Chicago windy-node Chicago windy-php Chicago windy-python ChihChengLiang abroadplayr 公務人員考察網的資料集 R 套件 ChihChengLiang pokemongor Useful Datasets, Your Best Starter As A Pokemon Researcher ChihChengLiang swirlitest Test all lessons of a swirl course. ChingChuan-Chen FPCA2 Functional PCA based on PACE 2.17 ChingChuan-Chen milr multiple-instance logistic regression with lasso penalty. ChingChuan-Chen rfda R packages for functional data analysis ChingChuan-Chen rpace FPCA based on PACE 2.17 ChingChuan-Chen test.opencpu ChingChuan-Chen testRep No description or website provided. ChingFanSheu ggerp ggerp: Visualizing Event-Related Potentials with ggplot2 ChongC1990 scRMD A R package for imputation of single RNA data ChongWu-Biostat GLMaSPU R package implementing an Adaptive test on high dimensional parameters in generalized linear models ChongWu-Biostat MethyImpute ChongWu-Biostat MiSPU Microbiome Based Sum of Powered Score (MiSPU) Tests ChongWu-Biostat glmtlp ChongWu-Biostat prclust Chr96er Last.fmVisualizer Chr96er PhotoMapper Chr96er shinyUtils ChrKoenig probpool Git project for sDiv workshop on probabilistic species pool ChrOertlin anota2seq latest version 0.99.1 Chris1221 GOldilocks 📚 Gene Ontology Label Discernment and Identification Chris1221 ccole Wrappers and convenience functions either not yet included in a package or for personal use. Chris1221 coR-ge 🐶 An R package for the Examination of Multiple Correction Methodologies in Accurate Genomic Environments Chris1221 coRge Evaluation of Simultaneous Inference Methods for the Human Genome. Chris1221 fmagrittr Ceci n'est pas une fourchette Chris1221 gen-scoRe Chris1221 goldi R Package for Gene Ontology Label Discernment and Identification. Chris1221 hapSub Cluster submission and ease of use toolkit for whole-genome simulation with realistic LD patterns using HapGen2 Chris1221 mineR 📚 An R Package for Fuzzy Keyword Identification and Quantification in Natural Language Chris1221 pRs Toolkit for the efficient construction and analysis of polygenic risk scores in R. ChrisDienes SeaClass An Interactive R Tool for Classification Problems ChrisKust rexpar rexpar R package - preliminary ChrisMaherLab ClonEvol ChrisMuir comtradr Functions for Interacting with the UN Comtrade API ChrisMuir refinr R implementation of Open Refine clustering algorithms ChrisTrisos githubforalex code from cory for alex ChrissCod LMfilteR An R-package for parameter estimation in linear regression models ChrissCod filteR An R-package for parameter estimation of linear regression models Chrisss93 cnn.stories Library for general NLP on scraped CNN articles ChristianBachmaier VanCreek VanCreek Repository ChristofSeiler braincog Differential correlation analysis between brain and cognition ChristofSeiler curvature Convergence diagnosis of Hamiltonian Monte Carlo ChristofferFlensburg XRank Afterburner for limma fit objects, providing posterior LFC and ranking. ChristofferFlensburg slugPlot makes fancy continous violin plots for ranked data ChristofferFlensburg superFreq Analysis pipeline for cancer exomes Christoph999 UseDT Test data-table in functions Christoph999 imsbasics Basic functionality Christoph999 test test package to show how folders are build in testthat (ok) and after build (not ok) ChristophRau GSAA Gene Set Association Analysis ChristopherLucas MatchingFrontier Optimal pruning for imbalance minimization in causal inference ChristopherLucas translateR R Package for Cross-Language Topic Modeling ChuanHong newproject ChuanHong robustETM_0.1 Version 0.1 of robustETM package ChuanHong robustETM_2.0 DNA Methylation Data ChuanJ JCPackage Adjust for positional and batch effects using ComBat ChuanJ posibatch Adjust for positional and batch effects using ComBat Chubbychunks odin_tasp_prep odin tasp prep ChubingZeng classo Cibiv gwpcR R implementation of a model of the polymerase chain reaction (PCR) and sequencing as a Galton-Watson branching process and Poissonian sampling CicciaLab iSTOP Circular-Data pnreg A package to analyze projected normal circular regression models CityUHK-CompBio DeepCC a deep learning-based framework for cancer classification CityUHK-CompBio HTSanalyzeR2 HTSanalyzeR2: A R package for gene set enrichment and network analysis of various high-throughput data CivilEngineerUK AEDA Adapitive Engineering Design Algorithms CivilEngineerUK marineEngineeR Collection of Routines for Marine Engineering, Breakwater Design and Wave Transformation ClairBee AS.angles Angular extraction functions for R ClairBee AS.circular Circular stats functions for R ClairBee AS.preprocessing Image pre-processing functions for ArchStats project ClairBee CB.Misc Miscellaneous functions that I find useful. ClairBee IO.Pixels Functions for Inside-Out dead pixel analysis ClairBee SX.weather Code to replicate & extend dissertation ClaraHapp MFPCA Multivariate Functional Principal Component Analysis ClaraHapp funData An S4 class for functional data in R ClaraMarquardt FEATure ClaraMarquardt ehR A collection of R functions designed to facilitate the interaction with and analysis of EHR data ClaraMarquardt featuristic A collection of R functions designed to automate the generation of EHR-based feature sets ClaraMarquardt huhn Personal Repository - Miscellaneous R Functions ClementCalenge GPS3sites ClementCalenge adehabitat Analysis of Habitat Selection by Animals ClementCalenge adehabitatHR Home Range Estimation ClementCalenge adehabitatHS Analysis of Habitat Selection by Animals ClementCalenge adehabitatLT Analysis of Animal Movements ClementCalenge adehabitatMA Tools to Deal with Raster Maps ClementCalenge metroponcfs A R package implementing the Metropolis algorithm ClementCalenge roedeer3sites Habitat Selection by the Roe Deer in three French Study Sites ClementCalenge scankd ClementCalenge ungulateCollisions Climandes ClimandesIndices a packet to calculate indices for temperature and precipitation Cmell CMUtils Cmell ResultsHelper Cmell SDTUtils Cmell diffR CoGAPS CoGAPS CoGAPS CoGAPSseq No description or website provided. CoGAPS VB Variational Approximation implementation of CoGAPS CoGAPS parallelrng Testing parallel RNG CodingMrWang prfa_zexianw R program Cogitos pphy R packages to fit data from a psychophysic experiment, extract main indexes (e.g. slopes) and draw graphs Cogitos predata R packages to grab raw data in different csv files into one data frame and to compute descriptive statistics including standard errors corrected for within-subject designs Cogitos statxp R packages to filter reaction times, format statistical results to Knitr/Sweave and export ANOVA data to a csv file. CognitionOpenDataProject CODreports Rmarkdown template to build reproducibility reports for the Cognition Open Data project ColinFay aside Send a long R job to be run aside ColinFay attempt A friendlier condition handler for R, inspired by {purrr} mappers and based on {rlang} ColinFay jekyllthat RMarkdown to Github Jekyll md ColinFay languagelayeR Access the languagelayer API with R ColinFay languagelayerR Access the languagelayer API with R ColinFay lexiquer Access Lexique3.81, a Natural Language Processing Database for French ColinFay proustr Tools for Doing Natural Language Processing with Proust's Novels ColinFay rgeoapi This package requests informations from the french GéoAPI inside R — https://api.gouv.fr/api/geoapi.html ColinFay rpinterest An R package to access the Pinterest API ColinFay tidystringdist String distance calculation the tidy way. ColinFay tidytrycatch Making trycatch the tidy way ColinFay trycatchthis A friendlier error, warning and message handler for R, based on {purrr} mappers and {rlang} ColinFay tweetthat A simple wrapper to tweet straight from your R session. ColinFay webmastR R tools for webmasters ColinFay wtfismyip A simple, dependency free wrapper around wtfismyip CollinErickson ContourFunctions Contour plot functions for R CollinErickson Empty CollinErickson GauPro R package for Gaussian process modeling CollinErickson NBAFantasy CollinErickson SMED-Code Code for Roshan et al. Sequential Exploration of Complex Surfaces Using Minimum Energy Designs CollinErickson TestFunctions R package of TestFunctions for simulation and optimization CollinErickson UGP Universal GP models - an R package CollinErickson bSMED R package bSMED for Batch Sequential Minimum Energy Design with Design-Region Adaptation by Kim et al. (2017) CollinErickson comparer CollinErickson contour Contour plot functions for R CollinErickson mbc Accurate timing and comparison functions for R CollinErickson sFFLHD R package for getting sFFLHD experiment designs CollinErickson splitfngr R package for splitting values from single function evaluation. CologneOpenData CologneOpenDataAPI.R Cologne Open Data API Implementation in R ColoradoDemography ProfileDashboard Development of SDO Profile Dashboard ColoradoDemography codemogAPI ColoradoDemography codemogProfile Helper Functions for the Colorado Demography Office Profiles ColoradoDemography codemogShiny ColoradoDemography tidycensus Tidy Census with mods ColtoCaro compMS ColtoCaro missMS Missing Data Models for Label-Free Mass Spectrometry Proteomics ColumbiaCDS DEEPAnalysis R analysis tools for DEEP (Dynamic Experiments for Estimating Preferences). ColumbusCollaboratory cognizer R package to call IBM Watson services. CommerceDataService eu.us.opendata As part of an EU-US Transatlantic Open Data Partnership, the eu.us.opendata R library was developed to provide access to comparable datasets from the EU and the US. This version is in alpha. Feedback welcome -- submit an issue via this repo! CommunityGeneticsAnalyses ComGenR Tools for community genetics analyses using R. ComputationalIntelligenceGroup 3DSomaMS 3DSomaMS is an R package for soma reparation, segmentation and characterization. ComputationalIntelligenceGroup 3DSynapsesSA SynapsesSA is an R package designed to process and analyze patterns in the three-dimensional spatial distribution of cortical synapses ComputationalModeling intro-to-pyplot-briandk intro-to-pyplot-briandk created by Classroom for GitHub ComputationalProteomicsUnit Pbase Manipluating and exploring protein and proteomics data ComputationalProteomicsUnit ProteomicsBioc2014Workshop Bioc2014 workshop on R / Bioconductor packages for Proteomics ComputationalProteomicsUnit cputools Miscellaneous helper functions aimed at facilitating and standardising simple repetitive tasks ComputationalProteomicsUnit pRolocGUI An interactive interface to pRoloc - ComputationalProteomicsUnit unimod Amino acid modifications for mass spectrometry ComputationalRegulatoryGenomicsICL GenomicInteractions R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics ConnorFWhite AssFunc assorted functions ConorIA eccc [DEPRECATED] A package to download and consolodate .csv historical climate data from Environment and Climate Change Canada ConorIA senamhi A collection of functions to obtain Peruvian climate data in R. ConorIA senamhiR A collection of functions to obtain Peruvian climate data in R. Hosted on Gitlab: https://gitlab.com/ConorIA/senamhiR ConservationInternational VitalSignsUtilities ConservationInternational landdegradation-service ConstantinosChr exdex Estimation of the Extremal Index Conte-Ecology conteStreamTemperature Package for cleaning and analyzing stream daily stream temperature Conte-Ecology singlePassDetection Comparison of single-pass vs. multiple pass estimations of fish population size Conte-Ecology zonalDaymet Package developed to assign Daymet climate records to catchments. ConvergenceDA visdom Toolkit for analyzing small or large samples of Smart Meter data and estimating attributes of customers ConvergenceDA visdomloadshape Proprietary load shape clustering tools for use with the VISDOM load data analysis tools Coraline66 Deseq This package allows you to perform DESeq2 differential analysis to the htseq counts files of different TCGA data types. Coraline66 Resampling This package provides two-step resampling of data sets in order to generate new truth set and perform further subgroup analyses. CornellLabofOrnithology auk eBird Data Extraction with AWK CornellLabofOrnithology stemhelper STEM loading, mapping, plotting, and analysis CorradoLanera depigner Utilities for _pigna_ stuffs at UBESP Corretx corretxUtils Library of useful self-made functions Cortalak A9Toolbox Cortalak MCXpress Crackz httr CraigMohn bikeCadHr utilities to read in cycling gps data from garmin .fit and .gpx files containing track location, heartrate and cadence data. data can be displayed as a map or a summary graphic CraigMohn wunderWrapper Wrapper for the rwunderground package. Fetches, saves and processes historical weather data CreRecombinase BeQTLR R package for Bootstrap eQTL (BeQTL) CreRecombinase FGEM Functional GWAS by Expectation Maximization CreRecombinase RColumbo R package for investigating expression level mediation of GWAS association CreRecombinase RSSReQTL Companion package to RSSR optimized for eQTL data CreRecombinase RSSp Polygenic RSS CreRecombinase SeqSupport Kitchen Sink R package for RSS helper functions CreRecombinase YoungEpiStroma CreRecombinase condoR When your data is really really wide CreativeDataSolutions rad Customization of radiant CreativeDataSolutions rad.data customization of radiant.data CriscelyLP imarpe CristianPorumb93 CristiStudProject This is a test Cronjaeger HotBirdHMM Finding recombination hotspots with a novel HMM-approach; Joint work w. Berklund, Terkelsen and Hobolth @BIRC (Aarhus Uni) CroteauCRIUSMQ EMQLS.test version reçue de Molière le 30 octobre 2015 CroteauCRIUSMQ github CrumpLab crumplabr R functions used in the Human Cognition and Performance Lab Crunch-io crplyr A 'dplyr' Interface for Crunch Crunch-io crunchdev Crunch-io crunchgeo :earth_asia: :earth_africa: :earth_americas: :world_map: Work with Crunch’s geospatial data via R Crunch-io crunchtabs Report generation for Crunch datasets in R Crunch-io crunchy crunch + shiny = crunchy Crunch-io rcrunch R package for interacting with the Crunch API Csislander CSCI6802Tutorial1 R recreation of CSCI 6802 Tutorial 1 Ctross EvoChess An R Package for Exploring the Cultural Evolution of Chess Strategy Ctross SkewCalc Ctross tattooR Cucurbitaceae cucumber-flesh Cucurbitaceae pumpkin.seeds 🍉 CuppenResearch MutationalPatterns R package for extracting and visualizing mutational patterns in base substitution catalogues Curt-Younkin RStudioConf2017 Jenny Bryan tutorial Cyriac96 assignment Cytoreason rdbfs R implementation of a simple database file system storage D-ESC CHMr DESC chemistry database access in R D-ESC ODMr ODM database access D-ESC dataQC Data 'cleaning' examples D-ESC envcan Download data in bulk from Environmnet Canada Climate Website D-Roberts DeepLearning D-Roberts statiotest R package implementing a new stationarity test. To install on OSx, please first install the devtools package. Then install using command: devtools::install_github("D-Roberts/statiotest"). The devtools package installation and requirements are described in detail at https://github.com/hadley/devtools. DAACS documentation Documentation for DAACS. DAPPERstats Rstud R insterface for studbooks DAPPERstats spawnest R package and tool for estimating spawning salmon population sizes DASpringate Rkoans R Koans: An interactive R tutorial DASpringate rUCsims A package for simulating confounded datasets and accounting for unmeasured confounders DASpringate samatha Build static websites in R DATAUNIRIO AulasUNIRIO AulasUNIRIO: An R package containing some datasets to teach statistics. DCMSstats dcmsmaps An R package for producing standard maps for DCMS statistical publications DCMSstats dcmsmuseums DCMSstats eeemployment DCMSstats eegva DCMSstats eesectors ⚠️ Prototype R package for the creation of the DCMS Sectors Economic Estimates statistical release DEIB-GECO RGMQL DEIB-GECO RGMQLScalaLib jar Scala API for RGMQL package DEIB-GECO RGMQLScalaLibs jar Scala API for RGMQL package DEIB-GECO RGMQLlib jar Scala API for RGMQL package DEIB-GECO TFHAZ R package to identify Transcription Factor High Accumulation DNA Zones DFEAGILEDEVOPS r-functions Repository of re-useable R functions in DfE DFJ91 MyFirstPackage DGendoo MM2S MM2S package for Personalized diagnosis of medulloblastoma subtypes across patients and model systems DIPnet fimsR-access A set of R scripts for accessing and working with FIMS data from R DISIC panorama DJAnderson07 esvis R Package for effect size visualizations. DJAnderson07 r2Winsteps This is a working package to move R files to Winsteps (with data and control files automatically written) and batch process files. DJAnderson07 sundry A sundry of convenience functions DJFernandes ABIgeneRMINC DJFernandes RscalapackSVD R interface to ScaLAPACK's Singular Value Decomposition DKMS-LSL HLAsim Allelic dropout simulation code DLAB-LASA repos DLEIVA DyaDA Dyadic Data Analysis in R DLEIVA steepness steepness of dominance hierarchies in R DLMtool DLMdata Package containing additional data for the DLMtool package DLMtool DLMextra DLMtool DLMtool DLMtool: management strategy evalaution and implementation of data-limited fishery stock assessment methods DLR-TS HelpeR Custom R functions I found useful for data wrangling. DMIRLAB-Group SELF This Package provides the SELF criteria to learn causal structure. Details of the algorithm can be found in "SELF: A Structural Equation Embedded Likelihood Framework for Causal Discovery"(AAAI 2018). DRManager waferscopeR R package for wafer level statistics and lot analysis DRosenman tmdltoolkit DSMemo sassy-r Attempting to recreate some of SAS's details in R DSkrzypiec oRtrack DSoudis shiftshare A package to perform Shift Share Analysis in R DaanNieboer GAP3 Dahaniel DoOR.data R package containing the data for the Database of Odor Responses Dahaniel DoOR.functions R package containing the functions used to build the Database of Odor Responses Dahaniel DoOR.misc DoOR helper functions not included in the main packages Dahaniel dmisc misc functions & helpers Dahaniel glodatamix basic functions to analyze data from the Galizia lab (.gloDataMix) DalsaMat RBiotools Bioinformatic R Functions DamianSiniakowicz DamiaNN R Package. First half = Script, Second half = OOP.Contains a vanilla Neural Network built from scratch in base R, and a script for interactively training the NN on some data. DamianSiniakowicz DamiaNN_R_Package DanBoyB cba A set of functions for simple cost benefit analysis of TII road realignment schemes DanBoyB m50JT DanHenebery BrewR BreweryDB API wrapper for R DanHenebery BreweryDB BreweryDB API wrapper for R DanHenebery Rxkcd Ever get tired of manually curating data about your favorite webcomic? Fret no more! DanHenebery dhPlot GGPLOT2 Theme for DanielH.io DanOvando Bayesian_Regressions DanOvando DLSA A repository for Data Limited Stock Assessments DanOvando EEMB-508 DanOvando Enhanced-Regression-Assessment DanOvando GUM Run Global Upside Model in the manner of Costello et al 2016 DanOvando Old-LBSPR LBSPR R Package DanOvando RobustRegression Package for running heteroskedastic and cluster robust regressions in R DanOvando Submitted-MPA-Effects DanOvando demons A bunch of helper functions for generic scientific coding DanOvando simfish_package A repo for the simfish suite of functions DanOvando test-gitignore DanRunfola Bibtex DanRunfola LOTR_Projections DanRunfola MatchingIntro DanRunfola SimTests DanRunfola SpatialSimulations_Causal DanWiebe fsgor DaniWi Channelcoding R-Package for channelcoding (block, convolutional, turbo) Daniel-J-Schmidt genrich Sampling Statistics for Population Genetics DanielAyllon Assignment Assignment for Coursera course DanielAyllon EarthQuakeAnalyzer DanielBonnery AutomaticStudy DanielBonnery BonneryBreidtCoquetMetronKDE Programs used for a working paper with J. Breidt and F. Coquet DanielBonnery CompositeRegressionEstimation DanielBonnery Dedup DanielBonnery EspleitsPelsPaquets Paquet R per crear les fichièrs DESCRIPTION e NAMESPACE e per butar un paquet sus github DanielBonnery Isi2015Sae R package for attenders of the ISI 2015 lectures on Small area estimation DanielBonnery JPSMCreateDataPackage No description or website provided. DanielBonnery JPSMSAE DanielBonnery JPSMSurv440 DanielBonnery JPSMSurv662 R package for the JPSM lectures "Small area estimation methods" (Surv662, spring 2016) DanielBonnery JPSMSurv699 DanielBonnery JPSMSurv798 DanielBonnery JPSMSurv798B DanielBonnery JPSM_data_integration No description or website provided. DanielBonnery JPSMdataintegration No description or website provided. DanielBonnery JPSMsurv615 Package for JPSM lectures on Regression and Analysis of Variance DanielBonnery Mocas DanielBonnery Mydirectories DanielBonnery SaeComputations R Package for the short course "Big Data for Small Areas", Wednesday, May 11, 2:30 p.m. – 6:00 p.m DanielBonnery SampleMLE DanielBonnery SweaveLst R package based on Sweave, listings, tikzDevice and stargzer packages to produce nice tex files, + latex style files. DanielBonnery SyntheticSimulated DanielBonnery TensorDB DanielBonnery dataASPEP DanielBonnery dataBaseball No description or website provided. DanielBonnery dataBeef No description or website provided. DanielBonnery dataCPS Package that will download cps micro data on first load. Data will be then available when the package is loaded. DanielBonnery dataCountyCropSurveySatellite No description or website provided. DanielBonnery pubBonneryBreidtCoquet2011 DanielBonnery pubBonneryBreidtCoquet2016 R code to reproduce the simulations of "Asymptotics for the maximum sample likelihood estimator under informative selection from a finite population" by Bonnery, Breidt and Coquet DanielBonnery pubBonneryBreidtCoquet2017 Programs used for a working paper with J. Breidt and F. Coquet DanielBonnery pubBonneryChengLahiri2016 DanielBonnery pubBonneryLahiriTran2016 DanielJMullen numint numint practice r package DanielKneipp DNAr Simulate Chemical Reaction Networks based on DNA on R DanielReedOcean COOLBEANS Model code for the Coastal Ocean Oxygen Linked to Benthic Exchange And Nutrient Supply (COOLBEANS) model (DOI: 10.1002/2015GB005303) DanielReid gemtcScript DanielSprockett reltools Microbiome Amplicon Analysis and Visualization DanielXiang 3Dbullets DanielaBuchwald bmwpress DannyArends BXDtools Various tools to work with BXD mice DannyGsGit MLsample A sample machine learning deployment DannyGsGit UW_DS450 DannyGsGit websteR Dardare prjct DarioBoh olinde package for data cleaning DarioBoh test1 Darwinita BuildinganRPackage Darwinita BuildinganRPackage2 Darwinita BuildinganRPackageLCP Darwinita EarthquakingLCP Darwinita FARSpackageLCP Dasonk Dmisc Miscellaneous functions that I want Dasonk SOWAS R package for wavelet spectral analysis and synthesis Dasonk bible R package to help with my reading plan Dasonk dbConnectGUI An R package that gives the user a GUI to connect to and explore MySQL databases using gWidgetsRGtk2 and RMySQL. Dasonk displayR Not as useful as the title might imply but exactly what it says Dasonk docstring Provides docstring like functionality to R functions without requiring the need to create a package. Dasonk drvc Discrete Random Variables Computations Dasonk findPackage This package helps you find the sos package Dasonk flydoc An R package to help provide documentation for your functions on the fly. Dasonk fss R package that provides various statistical tests just using sample statistics Dasonk future Imports functions from future versions of R Dasonk future2.14 Imports R functions that were introduced in R 2.14 Dasonk future2.15 Imports R functions that were introduced in R 2.15 Dasonk future3.0 Imports R functions that were introduced in R 3.0 Dasonk githubSearch R package that provides functionality to search to see if a package exists on github and if so what user owns it. Dasonk glmExtras Extra functions that are useful when working with generalized linear models Dasonk highlight The highlight package for R Dasonk knnflex Updating knnflex I guess... Dasonk local A package to facilitate the easy creation of a local R user package. Dasonk mines A minesweeper clone for R built using gWidgetsRGtk2 Dasonk musicmakeR A package for R which provides tools that make creating simple songs through the use of sine waves much easier. Dasonk myprofr A pseudo rewrite of Hadley's profr package. Dasonk packageAnalyzeR A package to produce statistics based on the source code of other R packages. Dasonk timestamp Adds a timestamp to the R prompt Data-Camp datacamp R interface to create interactive courses for www.datacamp.com Data-Camp datacampAPI A set of functions to safely set, get, remove and check variables used by DataCamp's R packages Data-Camp swirlcamp Wrapper around swirl for use on the DataCamp platform Data-Camp testwhat Write Submission Correctness Tests for R exercises on DataCamp Data8021 PersonalPackage Data8021 Temp DataCanvasIO RDataCanvas Basic runtime support for datacanvas.io DataCanvasIO moduleR moduleR makes writing module easy. DataComputing DataComputing DataCub feelingreddit Repo for an R Package to analyze comment threads on Reddit DataInsightPartners frequencies R functions to create frequency tables which display both counts and rates. DataInsightPartners nevadaReportCardr R Package containing Nevada Report Card data sets and functions to connect to the Nevada Report Card API. DataKind-BLR time-series-dashboard A simple application for end-to-end Time Series Modeling DataKnowledge rAmCharts API for Amcharts DataKnowledge visNetwork R package, using vis.js library for network visualization DataONEorg rdataone R package for reading and writing data at DataONE data repositories DataSciBurgoon aop AOP R Package. This package does the following awesome things: 1) Concentration-response analysis using bootstrap metaregression and 2) identifying sufficient causal key events in an AOP. DataSciBurgoon aopxplorer DataSciBurgoon aopxplorer2 Updated AOPXplorer intended for end-users DataScienceSalon NLPStudio DataScienceSalon chronic Chronic Illness & Depression: Comorbidity, Prevalence & Costs DataScienceSalon mdb DataScienceSalon movies DataScienceSalon predictifyR.3.0 DataScienceSalon xmar Societal Institutions: Opinions and Behaviors: Marriage DataScienceSalon xms DataScienceUWL DS705data data and R functions for DS705 DataShrimp rating DataWookie elliptical Test package for iXperience Data Science course. DataWookie ether An R package for working with Ethereum DataWookie ethereum An R package for working with Ethereum DataWookie exegetic DataWookie feedeR Handle RSS and Atom feeds from R DataWookie flipsideR Scripts for working with data from Google Finance DataWookie gambleR Package for things related to all forms of Gambling DataWookie lifespan R package with data for births and deaths. DataWookie liqueueR R package implementing Queue and PriorityQueue classes DataWookie myfxbook-for-R A small R interface to the myfxbook API. DataWookie r-ethereum An R package for working with Ethereum network. DataWookie saffeR An R package aggregating a selection of things relating to South Africa. DataWookie ubeR R package for the Uber API DataWookie urlshorteneR R package for shortening URLs. DataXujing Hello A test R packages DataXujing LN0SCIs3 A R package that used to compute simultaneous confidence intervals DataXujing XuJIngd3plus Create an R package that based on htmlwidgets and d3.js DataXujing idprep A R packages to transmit ID number Datactuariat Rpostal R bindings to libpostal for fast international address parsing/normalization DattaHub hslike DavZim DTTest DaveRGP Regular Personal bits I find useful DaveRGP daveRgp Personal bits I find useful DaveRGP test-repo David-Hervas clickR Fix Data and Create Report Tables from Different Objects David-Hervas sNPLS NPLS Regression with L1 Penalization David-Hervas timecont Keep track of time spent on different projects DavidArenburg dt.nuggets Some convenience data.table functions DavidEMoore ccKOPLS Replicating ccSVM in R DavidFirth qvcalc R package for quasi-variances DavidGarciaCallejas DGC DavidGarciaCallejas GroupDetection DavidGarciaCallejas LikelyCloud DavidGilgien ML.RMCL DavidHofmeyr SCPP Projection Pursuit for Spectral Clustering DavidMiserak jocular-lamp A program to take any human genome and find viruses within it. DavidObst Probing Probing for variable selection (Stoppiglia, H. and Dreyfus, G. and Dubois, R. and Oussar, Y.) DavidP76 worksuite R package with business intelligence functionality for moderate-sophistication users DavidQuigley HTDoseResponseCurve An R library for High Throughput Time Course Analysis of Dose Response DavidRLovell propr Ways to measure strength of proportionality DavideMagno83 ali.raf Risk Appetite Framework for ALI DavideMassidda average Libreria di esempio per la costruzione di un pacchetto R DavideMassidda explorer Strumenti per l'esplorazione dei dati DavideMassidda fmaTools Tools to integrate the package FactMixtAnalysis DavideMassidda raschTools R functions to manage Rasch models in R DavideMassidda testing Psychometric Testing Davidovich4 building.an.R.package This is an R package for Coursera's 'Building an R Package' assignment Davidovich4 hurricane This is an R package for Coursera's 'Data Visualization' assignment Davin-IBM R4WML R library for Watson Machine Learning (WML) DavisBrian Firth Firth's bias reduced logistic regression approach to GWAS DavisBrian gwasr Tools to make gwas easier DavisBrian seqMeta Meta-Analysis of Region-Based Tests of Rare DNA Variants DavisBrian seqMetaPipeline DavisBrian seqtools DavisLaboratory oppar Outlier Profile and Pathway Analysis in R DavisLaboratory singscore R package 'singscore' DavisVaughan tibbletime3 DavisVaughan tidyfinance DeSciL iatjit Just-in-time analysis of IATs on Qualtrics Debbiewm5 SPRE Deboleena RBoson An R library for distributed computing using AWS DeclareDesign DDestimate DeclareDesign DDtools utility functions for DD devs DeclareDesign DeclareDesign Declare and Diagnose Research Designs to Improve Them DeclareDesign DeclareDesignv2 DeclareDesign estimatr Fast Estimators for Design-Based Inference DeclareDesign fabricatr Imagine Your Data Before You Collect It DeclareDesign randomizr Easy to use tools for common forms of random assignment Dectech DectechR Collection of R functions useful for Dectech analysts Deducive FBinsightsR Use R to (easily) grab insights from Facebook. Defenders-ESC esas10agmts An R Data Package for Endangered Species Act Section 10 Agreements Defenders-ESC pdfdown R package for robust downloads of portable document format (PDF) files Defenders-ESC recovery.plan.overview R package wrapper for our recovery plan analysis at Defenders-ESC threatdemog Analysis of Threat and Demography Scoring Manuscript Defenders-ESC usagencies Names and Hierarchy of U.S. Government Agencies DejanDraschkow TestR Testing eyeR package Deleetdk TAPMAT Deleetdk kirkegaard Personal R package. No particular theme to the content. Deleetdk megadataset A worldwide dataset of data for countries and intra-country regions. DelgadoPanadero CatastRo R package to query Sede electrónica del Catastro DelgadoPanadero EjercicioExtraR Dementiy vkR Access to VK (Vkontakte) API via R Dementiy yarn An Interface to YARN API DennisBeest CoRF Co-data moderated randomForest DeprezM SCsim SCsim DerekYves dsademo Files for NYCDSA Demo DerekYves gcoder Provides methods to geocode an address in R using Google's (paid) Google for Work service. DerekYves nycschools Data for the Sociology 345 School Project DerekYves placement Drivetime, distance, and geocoding in R via the Google Maps API DerekYves r_geo_code Provides methods to geocode an address in R using Google's (paid) Google for Work service. DerekYves rsurveygizmo This R package provides functions to download survey response and email campaign data from Survey Gizmo, saving the returned data as an R data.frame. DerekYves tindex A Simple Package to Create Intra-group Ranking and Count Variables within R. DesmondCampbell MyPackage test R package creation and copying a git rep into github DesmondCampbell diseaseRiskPredictor package for multifactorial disease risk prediction based on family history Detlew Power2Stage Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies (TSD) Detlew PowerTOST Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies DevProgress RVertica DevProgress homestretch DevProgress personal-mt-rushmore DeveauP QuantumClone Clonal reconstruction from HTS data DeveauP RDevGraphlab Interaction graph for R package development DevinBayly Remofiles DexGroves avr Alternative voting systems in R DexGroves dang R implementation of nvbn/thefuck DexGroves gbm-lrd gbm with learning rate decay DexGroves glmnet Elastic nets in R, with some tweaks DexGroves hacktoolkit Miscellaneous R tricks DexGroves listcomp List comprehensions in R, for fun DexGroves plotligraph 3D graphs powered by plotly and igraph DexGroves ppR Prior period variable creation for longitudinal data in R DexGroves universe Plotly-powered univariates in R DheerajAgarwal rgdax Wrapper for GDAX Cryptocurrency exchange DhjAsnani Algaewala A data analytic project done on various water sample. Diederik-Ketellapper firstpackage My first package. Diheng GMDPP General MTurk Dataset Preparation for PACT Lab (GMDPP) Diheng MTScorer DimitriF DLC DimitriF eicCluster DimitriF lipopeptidor DimitriF quanTLC DimitriF quantlc shiny app for quantification of video densitometry data DiogoVeiga footfactors What the Package Does (one line, title case) DirkSteinhauser tgxBasis Generic and Extended Functions for Basic Data Types and Extended Classes DirkSteinhauser tgxUtils Extended Utility Toolbox for R Package and Workflow Developments Displayr flipAPI R package for retrieving data from web APIs Displayr flipAnalysisOfVariance Functions for computing ANOVA, MANOVA, and related methods Displayr flipChart Creates charts, working as a wrapper to other charting packages. Displayr flipChartBasics Basic functions to be used by other charting packages (i.e., flipPlots, flipStandardCharts, flipPictographs) Displayr flipChartTests Visual unit tests for flipChart and flipStandardCharts Displayr flipChartTests2 More visual unit tests for flipChart and flipStandardCharts Displayr flipChoice Choice-based Conjoint experiment analysis Displayr flipCluster Displayr flipDashboard Tools for assisting in creating dashboards Displayr flipData Data examples for flip projects Displayr flipDimensionReduction Displayr flipExampleData Example data files used in the flip project Displayr flipFormat Displayr flipImputation Displayr flipMaxDiff Experimental design and analysis of max-diff experiments Displayr flipMultivariates Displayr flipPictographs Displayr flipPlots Displayr flipRegression Displayr flipRegressionTests Additional tests for flipRegression Displayr flipStandardCharts HTMLwidget Charts with an Excel-like signature Displayr flipStartup Algorithms for analyzing the business peformance of a startup Displayr flipStatistics Displayr flipTables R package for handling tables and related objects Displayr flipTextAnalysis flipTextAnalysis Displayr flipTime Tools for manipulating and presenting time series data Displayr flipTransformations Displayr flipTrees Displayr flipU Flip Utilities Displayr rhtmlDonut R htmlwidget package for creating a detailed donut plot DistanceDevelopment Distance Simple distance sampling analysis DistanceDevelopment Distance2 New version of the Distance R package. DistanceDevelopment WiSP Wildlife simulation package for R. DistanceDevelopment dsm Density surface modelling for distance sampling. DistanceDevelopment mrds R package for mark-recapture-distance-sampling analysis DistanceDevelopment readdst Convert Distance for Windows projects into R code/data Distue termEnrichment Diversity-ParetoOptimal Demo Diversity-ParetoOptimal ParetoR Dixhom helloworld10times R packages sample Dixhom pload A R package. Load packages. Download them if necessary. DjalmaPessoa anamco Data sets for adac bookdown DjalmaPessoa convey variance of distribution measures estimation of survey data Dmirandae biodiverse Dmirandae blepd Dmirandae geocleaMT-1 No description or website provided. Dmirandae jrich These functions calculate the taxonomic measures presented in Posadas et al (2001) and in Miranda-Esquivel (2016) Dmirandae marti This project uses well documented geometrical functions to evaluate congruence between tracks (=MST) and therefore perform a Panbiogeographical analysis. Although the origin is Panbiogeography, the program could be used to evaluate common patterns as Areas of Endemism or Design of Conservation reserves or Primary Homology (in a biogeographical c… DmitryMarkovich Thrombin_Analyzer R Shiny App for Data Analysis In Thrombin Generation Experiments DnI-Institute r4ds DnI-Institute rfordatascience DnPeter htmlwidgets DnPeter rpivotTable Dobbs-Lab hiroPipeline DocOfi FARSread-Package A package to read FARS data from the National Highway Traffic Safety Administration NHTSA Docma-TU tmT Text mining Tool Doelp Doelp Patrick Doelp's Personal R-code repository. A random assortment of code with no real purpose other than it was useful once and might be useful again. DoktorMike bayesian-model-zoo This is my repository for Open sourced Bayesian models written in Stan DoktorMike dammmdatagen Marketing Mix Modeling Data Generator DoktorMike datools This is a package covering a lot of convenient tools useful for machine learning consulting using R DomBennett MoreTreeTools 🔼🌳💻 More tools for manipulating phylogenetic trees in R DomBennett treeman :deciduous_tree::man: An R package for manipulating phylogentic trees DomBennett treemantools DominikMueller64 BPSO DominikMueller64 LDtools Tools for computation of linkage disequilibrium between biallelic loci. DominikMueller64 Meiosis DominikMueller64 bayesMultiGroupRR DominikMueller64 dmisc DominikVogel vogelR My personal R package Don-Li CAB Don-Li CAB_original Don-Li CABdata DongmeiLi2017 ComSeq ComSeq: An ensemble method for RNA-Seq differential analysis DongmeiLi2017 Combine Combine: An ensemble method for RNA-Seq differential analysis DongyueXie scca An integrated R package for sparse canonical correlation analysis. Donowitz172 LiftUpTheReceiverIllMakeYouABeliever homerwork 16/10/17 on packages for ThinkR DoroChilds TPP Statistical analysis of Thermal Proteome Profiling experiments for drug-target detection by multiplexed proteomics DoseResponse drc Dose-response models DoseResponse medrc Hierarchical dose-response models in R Dotterbart rejSamp Dotterbart tpftud Test DrOppenheimer AMETHST DrOppenheimer genoMel DrOppenheimer tech_pilot_workflows DragonDuck MaxContrastProjection An R package to perform a maximum contrast projection of an image stack Dralliag opera Online Prediction by ExpeRt Aggregation DrrDom pfpp Package of personal R functions DrrDom rspci Analysis of fragments contributions calculated by SPCI software Drvinc Testp DrylandEcology rSFSW2 rSFSW2: A R package to create soil water balance simulation experiment DrylandEcology rSOILWAT2 A R plugin for soilwat. Duane321 emfactor This is a package to fit a k-dimensional latent factor model in the presence of missing data. DublinLearningGroup dataexpks This package creates a kickstart rmarkdown document that automatically performs some basic data exploration for the supplied dataset. DudbridgeLab AVENGEME Additive Variance Explained and Number of Genetic Effects Method of Estimation DudbridgeLab avengeme Additive Variance Explained and Number of Genetic Effects Method of Estimation DudbridgeLab familialdisease DudbridgeLab multipred Measures of predictive accuracy over multiple outcomes Dudemanguy911 RNASeqSuite A convenient command line wrapper around common RNASeq processing libraries Duke-Translational-Bioinformatics duke-data-service-RClient R programmatic client to the duke-data-service DunderChief roanda DustinMoriarty PsychrometricChart This is an R implementation of a web based interactive psychrometric chart. This application is currently under development. Dybian dpkg_r-cran-calibrate Packaging of r-cran-calibrate in Debain (mirror) DyfanJones ClipR ClipR package DyfanJones connectR DylanRJCollins whoishRisk whoishRisk R Package EBDAF1 TSMN EBlonkowski timeseries Handle, analyze and visualize time-series EBukin plotTS Set of functions in a packate for plotting and manipulating time series data EBukin tradeAnalysis-pack R package with functionality for trade data analysis ECA-D climind ECA-D ecad_indices_grid climate indices tool for E-OBS data (used only with ecad_indices_stations) ECA-D ecad_indices_stations climate indices tool for weather station data ECO230 eco230r Analysis Functions for ECO 230 EDIorg EMLassemblyline A workflow and set of functions to make EML using R. EDIorg EMLtools A workflow and set of functions for creating EML. EDIorg emlAssemblyLine A workflow and set of functions to make EML using R. EDIorg taxonomyCleanr A workflow and set of functions to clean your taxonomy data using R. EDiLD esmisc misc functions EDiLD qetx R package for Companion to Quantitative Ecotoxicolgy EDiLD rartenfinder R Client for the artenfinder API (http://artenfinder.rlp.de) EDiLD restax resolving ambiguous taxa EDiLD rspear Calculate SPEAR values in R (http://www.systemecology.eu/SPEAR) EDiLD xkcd2 EESI themetagenomics EESI theseus EK-Lee EMSaov EK-Lee EMSaovApp EK-Lee PPtree PPtree EK-Lee PPtreeCR PPtree with rcpp - testing EK-Lee PPtreeReg EK-Lee PPtreeViz PPtreeViz EK-Lee asVPC Visual Predictive Checks with average shifted EK-Lee classPP projection pursuit for classification EK-Lee fit4NM Platform for PKPD modelling using NONMEM EL-BID Agregador-de-indicadores Herramienta para agregar y analizar indicadores de desarrollo de diversas fuentes de datos EL-BID iadbstats-libreria-R API de conexión con la base de datos del Banco Interamericano de Desarrollo ELToulemonde dataPreparation Data preparation for data science projects. EMIjess evalwaterfallr Permute and Waterfall Plot evaluation data EMIjess roadmaptools Get data from ppmroadmap.com to R ERGZ gdistance ERGlass ERGmisc Utility Functions Ed Always Uses ERGlass lrcde.dev LRCDE package - development ongoing ETikalenko Infinity R package for getting call tracking reports from Infinity API EURAC-Ecohydro LapseRateCalculator R packages to calculate the air temperature and dew point temperature gradients among meteorological stations at different elevations EURAC-Ecohydro SnowSeasonAnalysis The R package SnowSeasonAnalysis contains some tools for the quality check of precipitation data and for snow analysis. EURAC-Ecohydro geotopOptim2 The R package geotopOtim2 is a plugin for the automatic calibration and sensitivity analisis of GEOtop 2.x hydrological model, based on the "Particle Swarm Optimisation" approach and the LHOAT "Latin-Hypercube One-factor-At-a-Time" approach. EXASOL r-exasol The EXASOL package for R provides an interface to the EXASOL database. EarthLifeConsortium earthlife An R package to wrap the combined Neotoma & Paleobiology API EccRiley Riley EcoEvoEducation EcoEvoApps Shiny applications for models in ecology and evolution. EcoFoG Cbalance Carbon Balance of forests EcoFoG ForestData Post-inventory processing of forest plot data EcoFoG SWBM Soil Water Balance Model EcoForecast ecoforecastR General statistical and informatic tools for ecological forecasting in R EcoNum EN-test Test code for EcoNum EcoNum bdrace Functions to access and manage RACE database data EcoNum econum Various routines to control scientific devices or to perform ecophysiological calculations. EcologicalTraitData traitdataform A package to manage and compile functional trait data into predefined templates EcotopeResearch EcotopePackage Ecotope Utility Function EcotopeResearch rterm Temperature-Energy Regression Models for Energy Use in Buildings EdFarrell animalTrack R package for animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data Edert NVT NVT - an R package for the assessment of RNA-Seq normalization methods EdvinasD resplsm EdwardKoonce farsSimple EdwardSLee alphabetr R package for obtaining TCR alpha-beta sequence pairs EdwinGraham EdNet Train deep neural networks for classification and regression EdwinTh dutchmasters EdwinTh equalizer Equalize two data frames for model scorring EdwinTh mytools An R package with analysis tools I want to have at my disposal at all times EdwinTh padr Padding of missing records in time series EdwinTh paletti Creating colour palettes from your own palette or list of palettes. EdwinTh rareboost Implementation of some rareboost algorithms in R EdwinTh tennis Bringing the data on github.com/JeffSackmann/tennis_atp and /tennis_wta to R EdwinTh thatssorandom R package with functions as described in thats-so-random.com EdwinTh tidytools dplyr wrappers for common queries Eflores89 banxicoR R package to download Banxico data 🏦 💹 Eflores89 eem Themes & shortcut functions for writing blog posts Eflores89 inegiChartR Easily create highcharts for dashboards or shiny using inegR package Eflores89 inegiR R package to interact with INEGI API's :bar_chart: :chart_with_upwards_trend: Eflores89 mexicomapR Easily create Mexican state and municipality choropleth maps Eflores89 nasadata R package to interact with NASA API's 🌎 🌍 Eflores89 senadoMX Funciones para interactuar con versiones estenográficas del Senado de México EliGurarie smoove Functions and methods for simulating and estimating correlated velocity movement (CVM) models. ElisabethDahlqwist AF AF is the attributable fraction package for estimating the model-based attributable fraction for logistic regression, conditional logistic regrssion, cox ph regression and frailty regression. ElizabethAB rutils Collect, document, and test R functions not currently built into a package ElizabethAB utils Personal use R utility functions Elkamao walmartR API Client for Walmart Open API ElkhartGroup AdvancedRPkg ElkhartGroup varian R package for variability analysis EllaKaye BLB EllaKaye BradleyTerryScalable R package for fitting the Bradley-Terry model to large datasets EllaKaye EMK Misc functions I find useful EllaKaye Module1 Associated with OxWaSP Module 1 EllaKaye SBT R package for fitting the Bradley-Terry model to large datasets EllaKaye ScalableBradleyTerry R package for fitting the Bradley-Terry model to potentially large datasets ElodiePlan elopage ElsevierSoftwareX SOFTX-D-15-00040 MaskDensity14: An R package for the density approximant of a univariate based on noise multiplied data. To cite this software publication: http://www.sciencedirect.com/science/article/pii/S2352711015000163 ElsevierSoftwareX SOFTX-D-15-00066 Thermoluminescence (TL) glow curves are widely used in dosimetric studies. Many commercial and free-distributed programs are used to deconvolute TL glow curves. This study introduces an open-source R package tgcd to conduct TL glow curve analysis, such as kinetic parameter estimation, glow peak simulation, and peak shape analysis. TL glow curves… ElsevierSoftwareX SOFTX-D-15-00067 FLBEIA: A simulation model to conduct Bio-Economic evaluation of fisheries management strategies. ElsevierSoftwareX SOFTX-D-16-00186 EmSherratt geomorph Geomorph is a software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical computing environment. This repository is dedicated to providing beta versions between CRAN uploads Emaasit DataMatching An R package for data matching Emaasit UGvoters16 An R package for the counts of Ugandan registered voters for the 2016 General Election Emaasit ebolaCases An R data package for the number of ebola cases and deaths in affected countries Emaasit sparkavro An R package to read an avro data file into a Spark DataFrame Emaasit sparkhaven An R package to read STATA, SPSS, & SAS data files into Spark DataFrames Emaasit sparkreadr An R package to read flat data files(csv, tsv, fwf) into Spark DataFrames Emaasit sparkreadxl An R package to read an excel data file into a Spark DataFrame Emaasit sparkredshift An R package to read data from Amazon Redshift into Spark DataFrames Emaasit sparkxml An R package to read an xml data file into a Spark DataFrame Emaasit spatialjoin An R package for joining attributes from one feature to another based on the spatial relationship Emaasit trbRticle Document template for the Journal of the Transportation Research Board Emelieh21 FlightsR API wrapper for FlightStats in R Emelieh21 trolMail R package to send an useless e-mail EmilAnker89 ArchiiAnalysis EmilAnker89 ArciiAnalysis EmilHvitfeldt ehlib Personal R Package EmilHvitfeldt ggpage Creates Page Layout Visualizations in R EmilHvitfeldt ggtetris Create Tetris Chart Visualizations in R EmilHvitfeldt hcandersenr An R Package for H.C. Andersens fairy tales EmilHvitfeldt offensiveR R package that checks for offensive words in texts and documents EmilHvitfeldt shortcuts EmilHvitfeldt tilemapr R functions for square and hextile maps EmilHvitfeldt walmartAPI Walmart Open API Wrapper EmilNejst Rcivecm A cointegration package for R EmilRehnberg party.readpaths Adds a function for reading the terminal node paths splitting criteria from party ctree EmilieT mutcraft R tools to mine & craft somatic mutations from cancer genomes EmilieT rnacraft Quantification of cell activity within a dataset through gene expression EmmanuelCharpentier patchSynctex R packaging of Jan Gleixner's PatchKnitSynctex EmongGnome metricsteam R Functions Used by Metrics Team Enchufa2 RcppXPtrUtils XPtr Add-Ons for 'Rcpp' Enchufa2 constants Reference on Constants, Units and Uncertainty Enchufa2 errors Error Propagation for R Vectors Enchufa2 simmer Discrete Event Simulation for R EncoredTechR ForceLogger EncoredTechR PythonR rPython with jsonlite pacakge EncoredTechR baseEncored “The basis of action is lack of imagination. It is the last resource of those who know not how to dream.” ― Oscar Wilde EncoredTechR datapkgEncored A tool to utilize Encored Tech open data End-to-end-provenance RDataTracker An R library to collect provenance from R scripts. EnriquePH FARS COURSERA: BUILDING R PACKAGES, Peer-graded Assignment EnriquePH NOAA.earthquake Mastering Software Development in R Capstone by Johns Hopkins University EnriquePH OEIS.R Data from The On-Line Encyclopedia of Integer Sequences in R Enriquez64 SumaN Enriquez64 sumNat EntirelyDS edsrparsing No description or website provided. EntirelyDS edsrutils No description or website provided. EntirelyDS mockable An implementation of mutable functions in R EntirelyDS modelr No description or website provided. EntirelyDS mutablefnr An implementation of mutable functions in R EntirelyDS sqlmapr SQL Mapper in R EomG EJE my first git package Epiconcept-Paris EpiCurve Epiconcept-Paris Epiconcepts Bibliothèque R pour les épidémiologistes Epiconcept-Paris GADMTools Bibliothèque R permettant de gérer les shapefiles GADM Epiconcept-Paris RServerUtils R package - Tools for R Server Epiconcept-Paris epxToR Import Epidata xml files (.epx) in R object EpidemiologyDVM Rnets The Rnets package for mapping resistance relationship networks EpidemiumOpenCancer OpenCancer R Package that aims helping anyone working with cancer data to import Epidemium dataset and build robust statistical models ErasmusOIC SMoLR EricArcher PAMsbuoy Manipulation and filtering for PAM (Passive Acoustic Monitoring) data collected from sonobuoys EricArcher geneticRF Random Forest Analysis For Genetic Data EricArcher rfPermute Estimate Permutation p-Values for Random Forest Importance Metrics EricArcher sprex Calculate species richness functions for rarefaction and extrapolation EricArcher strataG strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure. EricArcher swfscGenetics R NGS Code - SWFSC/MMGG EricArcher swfscMisc Collection of utility, analytical, mapping, and plotting functions used at the Southwest Fisheries Science Center. EricEdwardBryant TheEricBryant EricEdwardBryant YeastBarcodes EricEdwardBryant biogridr R package - local access to BioGRID interaction database EricEdwardBryant easydb R package - easily setup databases from plain text source EricEdwardBryant iSTOP EricEdwardBryant mutagenesis EricEdwardBryant prompt EricEdwardBryant rothfreezer R package - strains and reagent database EricEdwardBryant screenmill R package - tools for ScreenMill data EricIto BASiNET BASiNET - It makes the creation of networks from RNA sequences, with this is done the feature extraction from these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. EricMarcon SpatDiv Spatially Explicit Measures of Diversity EricMarcon dbmss Distance Based Measures of Spatial Structures EricMarcon entropart Entropy Partitioning to Measure Diversity EricQLi Rnlminb2 ErickChacon datasim An R package to simulate data based on models formula. It works with different types of effects and multivariate models. ErickChacon day2day Functions that can be useful in the day-to-day data analysis. It comprehends functions to find paths for projects, make summaries of databases inside folder and so on. ErickChacon mbsi Model-based Standardized Index: An R package to analyse and visualise extreme precipitation events ErikSchutte extrawhitespace Addin for RStudio, adds extra whitespace after parentheses. ErikSchutte leqtar Linear eQTL analysis in R ErikaAnderskar KnapSack EriksenJ FunctionsJE EriksenJ Wrangler ErlendNilsen MSEtools A collection of functions usuful when constructing MSE models Ermlab lightining-rstat R client for the lightning-viz server API http://lightning-viz.org/ Ersch001 PhChFo An intend to write an R package intended to deal with loading and transforming data from laboratory equipment as typically found in physical chemical laboratories Espanta DailyKos_Clustering Espanta EDX_FinalExam Espanta EmailSpam_TextAnalytics Espanta HarvardX-PH525.1x-Statistics-and-R Espanta HealthCare_Logit Espanta MovieLens_Clustering Espanta PoliceMotorVehicleTheft Espanta PredictVoting Espanta Sentiment_AnalysisTweeter Espanta VisualNetworkData Espanta WHO_VisualizationinR Espanta instload.packages Install and Load R Packages and report successful installation Espanta lubripack SMARTly installing and loading one/multiple R packages into memory! Espanta test Esra-K Stats EstatisticaComR MMM Media , Moda e mediana de um vetor EstatisticaComR teste EthanTaft clusteringTables Eucrow sapmuebase Base functions utils in SAP MUE Eunsol-Lee Lottery R homework... Plz give me lottery numbers~!!!! EuracBiomedicalResearch CompoundDb Creating and using (chemical) compound databases EuracBiomedicalResearch FamAgg This is the development version of the FamAgg Bioconductor package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/FamAgg.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=FamAgg. EuropeanForestInstitute tradeflows Forest products trade flows database EuropeanForestInstitute tradeflows-docs EvanOdell hansard An ironically named R package to automatically fetch data from the UK Parliament API. EvanOdell mnis An R package for downloading data from the Members' Names Information Service API. EvanOdell parlitools A collection of useful tools for UK politics Evatar geneScrapeR Evatar genescraper EventStudyTools api-wrapper.r Everlane everlaneR quality-of-life R package for Everlane Data EvilGRAHAM flatr Tidy and analyse contingency tables EvoNetHIV EvoNetVaccine EvoNetHIV Goodreau_et_al_Behavior_-_SPVL Modeling SPVL Evolution with Varied Behavioral Phenomena EvoNetHIV Herbeck-et-al-Vaccine-201x EvoNetHIV RoleSPVL Models & scripts from Sexual Role and HIV-1 Set Point Viral Load Among Men who have Sex with Men EwaMarek FindReference Ewan-Keith rstansim R package for running simulation studies with stan Ewan-Keith shinyShortcut Create executable files to run shiny apps directly in your browser ExtraSpace minPLS Implementation of Partial Least Squares in R Extreme-Mildness GT.Tools Game Theory tools package FASTGenomics FGpackageR R package for creation of FASTGenomics data packages FCARMONAF Rdemo Repositorio Demo Shiny FESOM spheRlab An R package with numerous functions related to spherical geometry. The package is intended in particular for analysis and plotting of geophysical unstructured-grid data. FFaupel mytestpck testing first package FJValverde entropies An R project to work with entropic coordinates, the entropy triangle, NIT and EmA. FK83 bvarsv Analysis of the Primiceri (REStud, 2005) model FK83 fdtest Randomization test for forecast comparisons FK83 murphydiagram Data and programs for the paper by EGJK (2015) FK83 scoringRules scoring rules to evaluate probabilistic forecasts FMunyoz Stima FNTD R-package Code Repository for the R package wrapping and enhancing the FNTD Java library FNTD R-package-classic Fork of the original Java-library / R-package before transferring most functionality to Java. Kept for downward compatibility. FPZhang2015 CCR Fit the correspondence curve regression FSUgenomics a1-dvera a1-dvera created by Classroom for GitHub FabianGrammes Ssa.RefSeq.db FabianRathke fmlogcondens Fast multivariate log-concave density estimation in R FafferMcgee calcium-analysis R package for analyzing calcium imaging data FakenMC micompr Model-independent comparison of simulation output Famguy rgoodreads An R package for the Goodreads API Fan-Yang-Econ CommonTrend Please see it on the official R website: http://cran.r-project.org/web/packages/CommonTrend/index.html Fan-Yang-Econ linear.tools see CRAN Fan-Yang-Econ linear.tools_github See CRAN for the official version Farabell MarIOGraphing Farabell testpackage Farewe Rarity The Rarity R package Farewe virtualspecies The virtualspecies R package Faskally CLmodel Faskally ef Faskally fflgis Faskally gmrf Faskally loggercal Estimation of Calibration Equations for Temperature Data Loggers Faskally rc Faskally rtemp Fcolli RTutorProcurementAuction RTutor Problem Set on Public Procurement Auction FeTaka sampling R routine to iteratively sample x[i,j] until a predefined delta is achieved FedericoComoglio Rknots Topological analysis of knotted biological polymers (e.g. proteins, DNA) with R FedericoComoglio wavClusteR An R package for PAR-CLIP data analysis FelippeRoza outlier A R package that helps on searching data that stands out FelixErnst tRNAscan2GRanges Convert tRNAscan-SE output to GRanges object FelixMay MoBspatial Spatial analysis of scale-dependent biodiversity changes FelixMay confettiRbasic Basic version of the spatial simulation model CONFETTI FemkeThon Sandboxy A small practice repository containing a primefinding function. FerrieHeskes Deel3-week2 Coursera Course R Packaging Fiddleman BrownieR R Analytics Package for the Popular NeuroIS Platform Brownie Fiddleman NeuroIS R Analytics Package for the Popular NeuroIS Platform Brownie FigNewtons electioneer A campaign finance data visualization system FigNewtons resume Figuera ElastH Replicar metodologia da SPE/MF para calculo de eslasticidade de receita-hiato FilipeamTeixeira dispfilter Disparity Filter from Serrano et al. 2009 FilipeamTeixeira skynet Generates networks from BTS DB1B/T-100 data Financial-Times ftRtools R Package of FT Data Science Tools FinitePopulationSampling lohrData Fionalav example.package2 Fishified multiCoxPH Various R functions to help run multiple regression models in R Fl0Sch ROI.plugin.gurobi Fl0Sch ROI.plugin.mosek Flavjack GerminaR Packages for graphics and index for seed germination ecophysiological evaluation Flavjack elisios Water Use Crop Requiremnets application Flavjack fieldbook Data anlysis application for statistical research Flavjack sapiens Interactive apps for scientific research Flavjack test My first package FloFloB Cooccurrence FloobtheGreat PIMisc FlorianSchwendinger ROI.plugin.nloptr FlowWest CDECRetrieve An R package to retrieve CDEC data FlowWest cdecmanager FlowWest cvpiaData FlowWest cvpiaFlow Flow Data for use with CVPIA SIT DSM FlowWest cvpiaHabitat FlowWest cvpiaTemperature FlowWest flowwest-rstudio-addins a set of addins that make working within RStudio easier FlowWest hecr FlowWest noaaCDO FlowWest waterYearType FluentData AQS FluentData AQScodes No description or website provided. FluentData ISDr FluentData asthmaProject Utility functions for the asthma project FluentData raqdm2 FluvialLandscapeLab NEO FluvialLandscapeLab USEgangsta FluvialLandscapeLab datapuppy Using R as an interface, allows for integration and analysis of environmental field data from varying sources including data loggers and field observations. FluvialLandscapeLab gangsta Generalized Algorithm for Nutrient, Growth, Stoichiometric, and Thermodynamic Analysis FluvialLandscapeLab hydrogeom FluvialLandscapeLab temperheic FlxPo AAA FlxPo KSS FlxPo eliothutils FlxPo eliothweather ForestPlots BiomasaFP RCode FoscoV deltaCMIP deltas on CMIP files FoscoV foreYield Forecast yield FoscoV sobSenAn Sobol Sensitivity Analysis Fraass StratCore R package (Bio/Lithostratigraphy tools for Scientific Ocean Drilling Data) FrancescaMancini FlickrAPI_EABhackathon FrancoisGuillem project Packages that help keeping files ordered in your R projects FrancoisGuillem tinyProject A lightweight data analysis framework for R users FrankD fuser Fused lasso for high-dimensional regression over groups FrankPortman bayesAB 🐢 bayesAB: Fast Bayesian Methods for AB Testing FrankPortman kaggle-criteo Franvgls CampR Libreria de funciones en R para el programa Camp Franvgls NeAtlIBTS R Library for the gears of the Northeastern Atlantic IBTS Surveys FranzKrah pilzeBRD Schnittstelle zur Webseite 'http://brd.pilzkartierung.de' zum download von Artenlisten für MTBs FranzKrah rCSBI Color Sampling from Biological Images FranzKrah rmycobank FranzKrah seta Set of Tree Aids FranzKrah timesoccur R package for time-series occursence analysis of community data FranzKrah timetree Interface to the TimeTree of Life website FredHasselman ManyLabRs R package repository for the ManyLabs projects FredHasselman ManyLabsR No description or website provided. FredHasselman casnet An R toolbox for studying Complex Adaptive Systems and NETworks FredHasselman nlRtsa FredHutch DataSpaceR An R package for CAVD DataSpace FredericGuyon MTiPatchSearch R package patchsearch FrissAnalytics shiny-js-tutorials friss shiny js tutorials FritzZuhl FFNutilities FritzZuhl Sunday_Tmp test getting Rstudio to work with github Frostarella DSUR.noof R package substitute for the package mentioned in 'Discovering Statistics Using R' FunGeST Palimpsest Comprehensive analysis and visualization of mutational processes in cancer genomes FunWithR MonteCarlo An R package for simulation studies. Functional-Genomics atlas_gsa Gene set analysis based on fisher exact test Fuzzy-Logix AdapteR Advanced analytics package that enables R users to perform in-database analytics using Fuzzy Logix's flagship DB Lytix suite of functions on Teradata Fuzzy-Logix Fuzzy-Logix.github.io FvD conceptr R Tools for Concept Hierarchies FvD junr Access Open Data Through the Junar API G-Thomson BSgenome.Mtruncatula BSgenome data package for Medicago truncatula G-Thomson IntermediateR Data for Geoffrey Thomson's Intermediate R course G-Thomson TxDB.Mtruncatula TxDB data package for Medicago truncatula G-Thomson gthor R package of things I find useful in my PhD work GBIFsiteChecker GBIFsiteChecker GBPeters team-maja-exercises Team Maja's exercise repository for WUR Geo-Scripting Course GDAC-miRNA miRNA-RPkg GHBolstad GeirYmse GHBolstad SalmonPopDyn GHBolstad evolvability GHBolstad lmmHeterosced GIS-SP-Group RCA R package for robust clustering of single cell RNA sequencing data GIST-CSBL MVP An implementation of Mass spectrometry Data Preprocessor in R Edit GIST-ORNL revengc revengc: An R package to reverse engineering censored, decoupled residential data for population density estimation GIST-ORNL wbstats wbstats: An R package for searching and downloading data from the World Bank API GL-Li rawcensus2010 GLEON GLMr R package for basic GLM model running GLEON LTERdata Functions for retrieving NTL LTER data GLEON LakeMetabolizer Collection of Lake Metabolism Functions GLEON rLakeAnalyzer An R version of Lake Analyzer GMELab GraBLD an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights. GRAPLE GRAPLEr R API for accessing GRAPLE WEB service. GRealesM superwise Superwise package for R GRousselet rogme Robust graphical methods for group comparisons GShotwell convertr Extensive unit conversion in R GShotwell easyMake Automatically generate Makefiles for R projects GShotwell openelections R wrapper for openelections API GTsiliki IntPROAST A wrapper to the PROAST R package by RIVM http://www.rivm.nl/en/Documents_and_publications/Scientific/Models/PROAST GabCabrerag TeoriaFinanzas Optimización de Portfolio usando R. GabauerDavid WVPU Gabegit glantools Gabegit gmExam my tool for creating exam paper using sqlite database. Gabegit gmdata some R function for my data analysis using an own R package. Gabegit gmtools some tools GabrielHoffman variancePartition GabrielOprescu downloadTM First version GabrielPigeon gabtool GabrielaLopez BiomasaFP RCode GabrieleArici BNPProcess GarretsonGroup-RA GRGDataFunctions Contains various business data functions for GRG GarretsonGroup-RA GRGPLRPOperations Repository for GRG's PLRP Operation Scripts GastonMauroDiaz caiman Canopy Image Analysis. Gastrograph RMandrill An R wrapper for Mandrill Gastrograph RS3 A library interfacing libs3 to R Gastrograph RSendwithus An R api wrapper for Sendwithus Gastrograph RStripe Stripe Library in R. Gastrograph RTwilio A wrapper for R to use twilio API GatesLab evalClust R package for evaluating cluster solutions GediminasB bayesVAR_TVP R/C++ implementation of Bayes VAR models GediminasB fls Time-Varying linear regression via flexible least squares GeeHLee GoogleR Geeblo kpiq GeertvanGeest RYeti GegznaV BioStat Collection of functions for biostatistics lectures GegznaV RcmdrPlugin.BioStat A Rcmdr package based on RcmdrPlugin.KMggplot2 GegznaV RcmdrPlugin.BioStat.old GegznaV RcmdrPlugin.BioStat_old GegznaV RcmdrPlugin.biostat A Rcmdr package based on RcmdrPlugin.KMggplot2 GegznaV conspect.helper Convenience functions :zap: GegznaV hyperSpec2 :traffic_light: A branch of `hyperSpec` project in R. Original project at https://github.com/cbeleites/hyperSpec GegznaV knitrContainer 🔜 📦 Collect and Print Multiple Objects in a `Knitr` R Markdown Report GegznaV kohonen.hexagons ⚠️ 🚧 Various functions to plot hexagons and hexagon maps in R GegznaV manyROC Tool for ROC analysis GegznaV multiROC Tool for ROC analysis GegznaV spAddins :white_check_mark: A Set of RStudio Addins GegznaV spHelper ⚠️ 🚧 Various R functions GegznaV spMisc 🔜 🥚 Miscellaneous R functions GegznaV spPlot :soon: :chart_with_upwards_trend: Plots And Extensions for `hyperSpec`, `ggplot2` And `plotly` GegznaV spTMP :no_entry_sign: Temporary Package To Test Functions of `sp` Family Packages Geidelberg cotonou Dynamic transmission model estimating impact of TasP/PrEP among FSW in Cotonou GeneCrab ggfish An R package extending ggplot2 to draw a fish-shaped plot GeneSurvey TCGAGeneReport TCGAGeneReport GeneTinderholm ocpuTest Test of OpenCPU webhooks with an R package GeneralElectric CellDistinguisher GeneticResources quickReg GeoBosh Rdpack R package Rdpack provides functions and macros facilitating writing and management of R documentation. Geographie-cites corpusminer-package Mining scientific journals corpus: semantics, networks and maps GeoinformationSystems xtruso_R R package for the EXTRUSO project GeorgiaEm 732A94_Lab3 GeorgiaEm 732A94_Lab4 GeorgiaEm 732A94_Lab5 GeoscienceAustralia unstructInterp GeraldCNelson nutmod Updated approach to doing nutrient consumption scenarios using the IMPACT modeling suite with SSP and FBS data GeraldCNelson nutrientModeling A place to store code (and hopefully data) about modeling nutrient availability from food availability now and in the future. FBSManipulation.R manipulates data from the FAO's Food Balance Sheets. NutrientCalcs.R generates nutrient metrics based on IMPACT model set of commodities. GerritEichner kader kader - R package for nonparametric Kernel Adjusted Density Estimation and Regression GfellerLab EPIC Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data. GfellerLab TILAtlas Gi-Seop ODA Ocean Data Analysis GianPaoloClemente DirectedClustering Package for computing clustering coefficient for weighted and directed networks. Gibbsdavidl CatterPlot Did you ever wish you could make scatter plots with cat shaped points? Now you can! Gibbsdavidl CatterPlots Did you ever wish you could make scatter plots with cat shaped points? Now you can! Gibbsdavidl ConsensusClusterParallelPlus Parallelized version of the bioconductor package ConsensusClusterPlus Gibbsdavidl ProCoNA Protein co-expression network analysis Gibbsdavidl VanillaBn An easily extensible vanilla boolean network package. Fork and extend! Gibbsdavidl fastukey A fast alternative for Tukey's biweight estimator of mean and correlation. Gibbsdavidl hyperstrat An R implementation of the hypergraph partitioning algorithm described by Vazquez (http://arxiv.org/abs/0712.1365). Gibbsdavidl ordmic Ordinal Measures for Image Correspondence Gibbsdavidl perminfotheo permutation test on conditional mutual information, on sum over all pairs given two matrices Gibbsdavidl twine C++ String processing library for R GilChrist19 GA STAT 243 Final Project - Genetic Algorithm GilDansou FranceMapWidget GilDansou Licence GilDansou shinyStart GilDansou wordcloudjs Gimperion tomkit R Library (tomkit) GioBo TR8 R package for downloading functional traits data for plant species GiulioCostantini EstimateGroupNetwork An improved version of JGL2 GiulioCostantini IATscores Compute robust IAT scores GiulioCostantini JGL2 JGL2 GiulioCostantini TOMproject TOM simulation files GiulioCostantini safeguardpower Safeguard Power Analysis GjjvdBurg SparseStep SparseStep: Approximating the Counting Norm for Sparse Regularization Gnolam DebugMessageR my package for debug message output in R Gnolam RedShiftR Key functions to simplify your R work with AWS RedShift GoodluckH Xipu This is not a package for everyone. Install with precaution. GopalSeshadri MyFirstPackage GopalSeshadri NOAA GordonChengTW GeneticAlgorithm Goschjann studcheckr Dummy R package for the Innolab @ LMU GradyLab methyPre Preprocessing pipeline resources and wrapper function for Illumina methylation arrays. Grag2015 mytools tools in R for data mining GranderLab ClusterSignificanceExtras Grandez Capstone mastering software R Grandez JGGEarthquake Capstone for Mastering software development in R Grandez JGGTidy Data Science Getting and cleaning data Grandez earthquake Capstone for Mastering software development in R Grandez fars Grandez jggEarthquake Capstone for Mastering software development in R GreallyLab SMITE This repo contains the R package SMITE. GreedBlink BETS Brazilian Economic Time Series GreedBlink BETS-beta Brasilian Economics Time Series GreedBlink BETS-beta_base_bcb GreedBlink BETSlite GreedBlink FGVTS-2 GreenleafLab NucleoATACR R package for reading in & working with NucleoATAC outputs GreenleafLab chromVAR chromatin Variability Across Regions (of the genome!) GreenwoodLab KnitR.examples GreenwoodLab MURAT GreenwoodLab RVPedigree GreenwoodLab funtooNorm GreenwoodLab pcev Gregor-Mendel-Institute dormancy Gregor-Mendel-Institute mlmm An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations GregorDeCillia shinyLikert Create shiny widgets for explorative analysis of likert data Gregorypi fars GrigoriyNos bacterial.peptides common function for peptidomics Grisoudre Descriptives Production de tableaux et graphiques (analayses univariées et bivariées) Grisoudre ProdFacto Production d'analyses factorielles (ACM) Grisoudre ProdFactoBeta Grisoudre RecodPCS Recodage de professions selon la nomenclature des PCS de l'Insee Groupe-ElementR MTA Multiscalar Territorial Analysis Groupe-ElementR SpatialPosition :anger: R package for computing spatial position models Groupe-ElementR cartography :globe_with_meridians: Thematic Cartography GuangchuangYu ChIPseeker :dart:ChIP peak Annotation, Comparison and Visualization GuangchuangYu DOSE :mask:Disease Ontology Semantic and Enrichment analysis GuangchuangYu GOSemSim :golf:GO-terms Semantic Similarity Measures GuangchuangYu ReactomePA Reactome Pathway Analysis GuangchuangYu SSS SKLEID Sequence Suit GuangchuangYu badger generate badge to be embeded in README or GitHub pages for R repo GuangchuangYu bitr Biological Id TranslatoR GuangchuangYu chinamap https://guangchuangyu.github.io/chinamap GuangchuangYu clifun UNIX command line funny stuff in R GuangchuangYu clusterProfiler :bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters GuangchuangYu dlstats :arrow_down:download stats of R packages GuangchuangYu emojifont :lollipop:Emoji and fontawesom in both base and ggplot2 graphics GuangchuangYu enrichplot Visualization of Functional Enrichment Result GuangchuangYu ggimage :art: Use Images in ggplot2 GuangchuangYu ggshadow shadow text for ggplot2 GuangchuangYu ggtree :christmas_tree:Visualization and annotation of phylogenetic trees GuangchuangYu ggtreeghost GuangchuangYu hexSticker :sparkles:Hexagon sticker in R GuangchuangYu mapr GuangchuangYu meizhai system monitor in R GuangchuangYu meme create meme GuangchuangYu meshes MeSH Enrichment and Semantic analyses GuangchuangYu mlass 💥Machine Learning clASS GuangchuangYu mypubmed GuangchuangYu rvcheck :white_check_mark:R/Package Version Check GuangchuangYu scatterpie :art:scatter pie plot GuangchuangYu seqcombo sequence recombination visualization GuangchuangYu seqmagick sequence manipulation GuangchuangYu shadowtext shadow text for grid and ggplot2 GuangchuangYu skleid State Key Laboratory of Emerging Infectious Diseases GuangchuangYu tidytree :shower:A Tidy Tool for Phylogenetic Tree Data Manipulation GuangchuangYu treeio :seedling:Base Classes and Functions for Phylogenetic Tree Input and Output GuangchuangYu yyplot Guangchuang Yu's Plot Utilities Guangyou rBioLib GuillemSalazar EcolUtils Utilities for community ecology analysis GuillemSalazar FastaUtils Utilities for DNA/RNA sequence processing GuillermoMarcillo RyeBiom A set of functions to simulate cover crop growth under non-stress conditions Guilz rfret Analyze FRET Binding Data with R Guimaraesmvf fbmR GustafRydevik GryPack GustavoBruges ddiCorpusR Data frame/tibble Corpora for Drug-Drug Interaction Extraction GustavoBruges earthquakeR R Capstone Project GustavoBruges fatalityR Fars function in the Package fatalityR Gvuillier homework_gv_16_Oct Package with studied functions HBGDki RStarterPkg R package skeleton to be used within HBGDki HBGDki ghap Tools for working on ghap HBGDki growthstandards R package for anthropometric growth standard calculations HBGDki hbgdStatSummary summary statistics of datasets HBPMedical CCC 3C-strategy implementation in R from TAU team HBPMedical ggparci HCBravoLab bioc2016Addendum HCBravoLab epivizGviz HCBravoLab epivizrChart HCBravoLab greengenes13.5MgDb HCBravoLab metagenomeFeatures R package for annotating metagenomic datasets with taxonomic information HCBravoLab metagenomeSeq Statistical analysis for sparse high-throughput sequencing HCBravoLab ribosomaldatabaseproject11.5MgDb Bioconductor annotation package for RDP 16S rRNA database version 11.5 HCBravoLab workshopBioc2016 HCIC r-tools Tools for Research in R HFBrowning EnvEpi Common functions used to format data for environmental epi HFpostdoc sarModel Simulated the dynamics of the inquiline food web inside Sarracenia pitcher plants HGray384 TAS HIDAP cropont HIDAP fbdesign No description or website provided. HIDAP fbmaterials HIDAP fbprogram HIDAP fbprstages HJ08003 HJemIRT HJ08003 HJwru Copy of Kosuke's wru HJ08003 QSS No description or website provided. HJ08003 socraticswirl-RStudioServer The RStudio Server version of Socraticswirl HJ08003 socraticswirlInstructor-RStudioServer HLeviel hello Hello world package HLindsay AlignmentTools Functions for working with bam files and Bioconductor GenomicAlignments in R HLindsay CrispRVariants Tools for counting and visualising variant alleles in CRISPR mutagenesis sequencing data HPE-Haven-OnDemand havenondemand-r Client library for R to call Haven OnDemand APIs HRumgay myFirstProject Things in R HSL Rpgcli R client for PopGen web service HScheiber powers This is a toy R package for a class assignment in STAT547M at UBC. Habet CSE270 Data sets for Sports Analytics class Hackout2 epimap Repo for the map team Hackout2 epiphylo Epidemics and outbreak dynamics with phylogenetic trees Hackout2 incidence The incidence package for computation and visualization of incidence from outbreak linelists Hackout2 mapData Helper functions for preparing outbreak data for interactive maps Hackout2 repijson R package implementing EpiJSON format Hackout3 cleanr Hackout3 contacts Hackout3 epicontacts Hackout3 epimatch Finding matching patient records across tabular data sets Hackout3 outbreaks outbreaks: a R package compiling disease outbreak data Hackout3 saphy Sequential analysis of phylogenies Hackout3 timetrees A collection of time-stamped pathogen phylogenies HaemAalborg hemaClass Classification tools for haematological diseases Hafro rgadget Rgadget is a set of useful utilities for gadget HaidYi DASC HajkD LTRpred Functional de novo annotation of LTR retrotransposons HajkD biomartr Genomic Data Retrieval with R HajkD comparative Comparative Transcriptomics with R HajkD metablastr Meta-genome scale BLAST searches HajkD myTAI Evolutionary Transcriptomics with R HajkD orthologr Comparative Genomics with R HajkD philentropy Information Theory and Similarity Quantification with R HajkD seqreadr Read Genomic File Formats with R HajkD seqstats Biological Sequence Statistics in R HajkD winnr An R package for true winners, e.g. @nand2dave Halvee BioInfo.Scripts Halvee rvatk R library for working with rare variant sequence data. Hamedhm SmoothWin Implementation of exponentional smooth windowing in the linear regression HanOostdijk odataR R package for read access to OData information HanOostdijk odataR_old R Package for access to OData interface (especially CBS data) HangRuan1912 phyExp No description or website provided. HanjoStudy VineVizR A package to visualise RVineMatrix objects with visNetwork HanjoStudy quotidieR Everyday functions used in the analytical workspace HannahVMeyer PhenotypeSimulator Hanyi1106 transnorm HanyuJiangHarvard Linreg HaoLi111 MFVN Package: MFVN Type: Package Title: Multivariable Functions Visual & Numerical library Version: 0.1.0 Author: Hao Li Maintainer: Hao Li Description: MFVN offers a number of tools to apply certain function to multidimensional space, managing data and functions, calculate numerical derivatives & antiderivatives for multivatiable functions and create different visualizations. License: GPL V2.0 Encoding: UTF-8 LazyData: true Hariharasubramanyam Reports Hariharasubramanyam Stats Hariharasubramanyam metricsComplete HarvardForest ecoapps Hashim94 data-scraping-package Data Science, first portfolio Haycen HW8allegue STAT-545 Homework 8 Haycen SQUID No description or website provided. Hayeke RAssignment 超市销售数据分析练习（R课程） HeQSun findGSE Genome size estimation by fitting k-mer frequencies iteratively with a skew normal distribution model HealthBigData eHOPcore Core functions to work in the eHOP environment HealthBigData oracleConnect Package to ease the installation of drivers and the settings to connect R to an oracle database HeczkovaPetra BP-Klasifikace-DNA-sekvenci HegemanLab ProteinTurnover R-script for proteomics-scale protein turnover calculations and supporting docs HegemanLab w4mclassfilter Filter W4M data matrix and metadata by sample-class HegemanLab w4mclstrpeakpics Visualize likelihoods and intensities of features among members of a cluster Heipihanhan declass HelenKettle StagePop Stage structured modelling in R HelenKettle microPop HelenSteingroever Rwald HelenaLC CATALYST Cytometry dATa anALYsis Tools Helmut01 AdaptiveBE Operational characteristics of BE studies in 2-stage designs via simulations. Helmut01 replicateBE Comparative BA-calculation for the EMA's Average Bioequivalence with Expanding Limits (ABEL) HemingNM ENMwizard Tools to facilitate ENM Hemken SASmarkdown A collection of R functions that extends knitr's capability for using SAS as a language engine Hemken Statamarkdown Functions to write Stata documentation with knitr Hemken stdBeta_R Standardize model parameters by transforming variables HenSeVo firstNN HenrikBengtsson ACNE 🔬 R package: ACNE HenrikBengtsson BiocParallel.FutureParam 🚀 R package: BiocParallel.FutureParam - a BiocParallelParam class using Futures HenrikBengtsson PSCBS 🔬 R package: Analysis of Parent-Specific DNA Copy Numbers HenrikBengtsson R.archive R package: R.archive HenrikBengtsson R.basic R package: R.basic [DEPRECATED] HenrikBengtsson R.batch R package: R.batch [DEPRECATED] HenrikBengtsson R.cache R package: R.cache - Fast and Light-weight Caching (Memoization) of Objects and Results to Speed Up Computations HenrikBengtsson R.colors R package: R.colors [DEPRECATED] HenrikBengtsson R.devices 🎨 R package: Unified Handling of Graphics Devices HenrikBengtsson R.devices.rgl 🎨 R package: Enhances the R.devices and rgl packages HenrikBengtsson R.filesets R package: R.filesets - Easy Handling of and Access to Files Organized in Structured Directories HenrikBengtsson R.graphics R package: R.graphics [DEPRECATED] HenrikBengtsson R.huge R package: R.huge HenrikBengtsson R.io R package: R.io [DEPRECATED] HenrikBengtsson R.lang R.package: R.lang [DEPRECATED] HenrikBengtsson R.matlab R package: R.matlab HenrikBengtsson R.menu R package: R.menu HenrikBengtsson R.methodsS3 R package: R.methodsS3 HenrikBengtsson R.oo R package: R.oo HenrikBengtsson R.rsp :page_facing_up: R package: Dynamic generation of scientific reports HenrikBengtsson R.utils 🔧 R package: R.utils (this is *not* the utils package that comes with R itself) HenrikBengtsson RCmdCheckTools R package: RCmdCheckTools HenrikBengtsson RGitHubAPI HenrikBengtsson Rigvtools R package: Prototype / mockup R API for igvtools HenrikBengtsson affxparser 🔬 R package: This is the Bioconductor devel version of the affxparser package. HenrikBengtsson aroma 🔬 R package: aroma (spotted two-color microarray analysis) [DEPRECATED] HenrikBengtsson aroma.Base 🔬 R package: aroma.Base [DEPRECATED] HenrikBengtsson aroma.affymetrix 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets HenrikBengtsson aroma.agilent 🔬 R package: aroma.agilent [DORMANT] HenrikBengtsson aroma.apd 🔬 R package: aroma.apd HenrikBengtsson aroma.axon 🔬 R package: aroma.axon [DORMANT] HenrikBengtsson aroma.cn 🔬 R package: aroma.cn HenrikBengtsson aroma.cn.eval 🔬 R package: aroma.cn.eval HenrikBengtsson aroma.core 🔬 R package: aroma.core HenrikBengtsson aroma.illumina 🔬 R package: aroma.illumina [DORMANT] HenrikBengtsson aroma.light 🔬 R package: This is the Bioconductor devel version of the aroma.light package. HenrikBengtsson aroma.light-BioC_release R package: This is the Bioconductor release version of the aroma.light package. It's synchronized via the Bioconductor Git-SVN bridge. This is effectively only a READ-ONLY repository. For bug reports, pull requests and so on, please use the https://github.com/HenrikBengtsson/aroma.light GitHub repository HenrikBengtsson aroma.seq 🔬 R package: aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework HenrikBengtsson aroma.tcga 🔬 R package: aroma.tcga [DEPRECATED] HenrikBengtsson calmate 🔬 R package: calmate - Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation HenrikBengtsson cnagIO 🔬 R package: cnagIO [DORMANT] HenrikBengtsson dChipIO 🔬 R package: dChipIO [DORMANT] HenrikBengtsson doFuture :rocket: R package: doFuture - A Universal Foreach Parallel Adaptor using the Future API of the 'future' Package HenrikBengtsson expectile R package: expectile [DORMANT] HenrikBengtsson fake-GLAD R package: A fake stub for the GLAD package (for Travis CI usage only) HenrikBengtsson foo HenrikBengtsson future :rocket: R package: future: Unified Parallel and Distributed Processing in R for Everyone HenrikBengtsson future.BatchJobs :rocket: R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs HenrikBengtsson future.apply R package: future.apply - Apply Function to Elements in Parallel using Futures HenrikBengtsson future.batchtools :rocket: R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools HenrikBengtsson future.callr :rocket: R package future.callr: A Future API for Parallel Processing using 'callr' HenrikBengtsson globals 🌐 R package: Identify Global Objects in R Expressions HenrikBengtsson illuminaio 🔬 R package: This is the Bioconductor devel version of the illuminaio package. HenrikBengtsson legacy-illuminaIO 🔬 R package: illuminaIO [DEPRECATED; replaced by Bioconductor's illuminaio] HenrikBengtsson listenv R package: Environments Behaving As Lists HenrikBengtsson matrixStats R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors) HenrikBengtsson miniPac Temporary: An R package that causes weird `R CMD check` problems related to R.utils HenrikBengtsson pathinfo R package: Just a sketch for now HenrikBengtsson profmem 🔧 R package: profmem - Simple Memory Profiling for R HenrikBengtsson recycle R package: Avoid duplicating objects in R by recycling them. HenrikBengtsson rmini R package: A minimal R package HenrikBengtsson sfit R package: sfit HenrikBengtsson startup :wrench: R package: startup - Friendly R Startup Configuration HenrikBengtsson upkg Henrygwb HMMVBpack Hershberger networksS17 for spring 2017 networks class HerveAbdi PTCA4CATA PTCA4CATA R Package HeyangGong estcondmin Hillbert transxchangeR Basic functionality for dealing with transxchange data in R Hillea AddBracesRStudio Add curly braces if keys do not work Hillea AddBracketsRStudio Add square brackets and curly braces if keys are not working Hiro47 addin R addins Hiuyu mutationCheck Check and QC mutations from BAM HolhosAttila solveR It's an R package which contains R function to solve LP problems. HomeBankCode DarcleITS R package for parsing LENA's .ITS files HomeBankCode rlena R package for parsing LENA's .ITS files Hong-Revo glmnetUtils Utilities for glmnet Hong-Revo testPkg Hongming-Pu vsFlcm Honguyen14 anything HorridTom clahrcnwlhf Analysis of CLAHRC NWL Heart Failure project data HoustonUseRs hrugrhelpr this is a package of helper functions for the Houston R Users Group HoustonUseRs kexpedia code for the Kaggle Expedia competition https://www.kaggle.com/c/expedia-hotel-recommendations HoustonUseRs pipefittr HoustonUseRs shinyCap Hrimthusar matf-ViS-Rpaket HristoTomov DBEST HristoTomov PolyTrend HuajieYang firstpackage HuangRicky ROpenFIGI A convenient R interface to OpenFIGI API HudsonAlpha MethylDeconBloodSubtypes HudsonAlpha R2DGC Hugemiler ZedXL HughParsonage AAAA HughParsonage ASGS ABS geographic data structures HughParsonage BBBB HughParsonage CRIMpp Retirement incomes model HughParsonage Census2016 Data from the ABS Census (by SA2) HughParsonage Census2016.DataPack.TimeSeries HughParsonage Census2016.spec HughParsonage Grattan-Intro-to-R-and-Statistics HughParsonage PSMA Geocoding Australia Using the PSMA Data HughParsonage formalCoverage Determine whether functions' arguments have been used HughParsonage grattan Common quantitative tasks for Australian policy analysts HughParsonage grattanCharts Reproduce charts in the style of the Grattan Institute HughParsonage grattanElectionMaps Creating election maps HughParsonage grattanReporter Parsing grattan reports for errors HughParsonage heims Decoding and validating heims variable HughParsonage hutils Miscellaneous R functions and aliases HughParsonage journey.to.work1116 HughParsonage nsw.property.sales HughParsonage taxstats Data from ATO HughParsonage testGlobalEnv HughParsonage waterfalls R package to create waterfall charts Hugo-Toledo ANAINESVZ-pedigreeR Hugo-Toledo GDLC-BGLR-R Huitziii kaggle-house-prices Huitziii testShiny HuntsmanCancerInstitute BioiminerQT HuntsmanCancerInstitute hciR R package for RNA-seq workflows at HCI Hutchr LLSR Data Analysis of Liquid-Liquid Systems HydrosystemsGroup Weather-Generator IALSA IalsaSynthesis R Package for synthesizing information across collaborating research IAMconsortium gdx2iamc R package to convert GAMS generated output in the GDX format into IAMC-compatible format. It can also produce the excel spreadsheets for submission to the IAMC database. IAMconsortium iamc R package to work with IAMC-format data IBMDataScience WatsonR R package wrapping around Watson APIs IBMDataScience objectStoreR R Package to read/write files from Object Storage in Bluemix IBMDecisionOptimization DOcplexcloud-R-client ICBI neoantigeR a R package to identify neoantigens from NGS data ICES-dk rICES R for ICES: Linking ICES data, science, and advice with R ICI3D daidd-pkg R package for DAIDD ICI3D ici3d-pkg R package for DAIDD and MMED clinics ICRAR ProFit ProFit is a galaxy image bulge-disk decomposition program IDInteraction IDInteractionRpackage R package containing analysis functions for IDInteraction project IFARbiostats coretools Include a series of helper functions to initial a R project, a shiny project or install common packages IFARbiostats ifar.reports IFIproteomics E2Predictor IFIproteomics LFQbench IGNEX IgnexCompare Tools to compare pollen sequences (work in progress) IGNEX IgnexTaxonomy R code of the IgnexTaxonomy package IM-APHP mlcodage IM-APHP pmeasyr Ce package R a été conçu pour faciliter la lecture, le chargement et l'exploitation des données du PMSI. IMB-Computational-Genomics-Lab ascend R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ASCEND) IMTorgCustomSoln SS-API-Wrapper-R R version of the ScrumSaga API Wrapper INBO-BMK INLA WARNING! This is a read-only mirror of the INLA package. For the latest version please visit www.r-inla.org. INBO-BMK multimput multimput is an R package that assists with analysing dataset with missing values using multiple imputation. INBO-Natura2000 abvanalysis No description or website provided. INBO-Natura2000 n2kanalysis No description or website provided. INBO-Natura2000 n2khelper No description or website provided. INPEtrajectories STDataAccess INPEtrajectories TrajDataMining INRA rgs3 R package wrapping the GS3 program for genomic selection (http://genoweb.toulouse.inra.fr/~alegarra/). INSP-RH bw Body weight change model for adults and children INSP-RH children INSP-RH pif Estimation of the Population Impact Fraction INSP-RH ssar Fast R implementation of Gillespie's Stochastic Simulation Algorithm INSP-RH weightR Code for the ODE Adult system INWT INWTUtils R package with utility functions used by INWT Statistics INWT MariaDB_Monitor INWT dbtools R package for connecting and querying databases IOR-Bioinformatics PCSF IPS-LMU wrassp wrassp is a wrapper for R around Michel Scheffers's libassp (Advanced Speech Signal Processor). The libassp library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, … IQSS Amelia Amelia: A Package for Missing Data IQSS AutoCast IQSS IQSSdevtools Experimental package for making it easy to initialize and compile R packages complying with IQSS Best Practices IQSS PSI-Library IQSS Rbuild IQSS RobustSE IQSS TwoRavensSubset IQSS WhatIf WhatIf: Software for Evaluating Counterfactuals IQSS YourCast IQSS Zelig A statistical framework that serves as a common interface to a large range of models IQSS Zelig4 Old version of the statistical package Zelig, v4.x. New version is in the Zelig repo. IQSS Zelig4Choice 2 Bivariate Choice Regressions, 2 Ordinal Choice Regressions, and 1 Multinomial Choice Regression IQSS ZeligChoice ZeligChoice IQSS ZeligEI Module for the Zelig package containing Ecological Inference models. IQSS ZeligFeedback IQSS ZeligGAM ZeligGAM IQSS ZeligGAM4 General Additive Models for Zelig IQSS ZeligMultilevel Five Multi-level Zelig Models IQSS ZeligNetwork Network Regressions for Zelig 4 IQSS ZeligPanel IQSS ZeligSEM ZeligSEM IQSS cem IQSS dataverse-client-r R Client for Dataverse 4 Repositories IQSS ei IQSS leaflet-shiny-dvf An R package wrapping leaflet-dvf for Shiny. IQSS zeligverse Easily install, load, and test Zelig packages IRBLleida UdBRpackage Miscellaneous R functions for the analysis of data made by the members of the Biostatistics Unit of the IRBLleida. IRBLleida wvven Wrong Variable Value Email Notification IREA-CNR-MI ireaRscripts IREA R scripts for spatial processing IREA-CNR-MI sprawl Spatial Processing (in) R: Amorphous Wrapper Library IRSIjrp SelBal SelBal repository IRSN DiceKriging Branch R package DiceKriging (Kriging methods for computer experiments) IRSN DiceView R package to plot computer experiments design and surrogate IRSN RobustInv IRSN codadiags R Package for Markov chain Monte Carlo burn-in IRSN smint Smooth Multivariate Interpolation for Gridded and Scattered Data IRkernel IRdisplay IPython display machinery for R IRkernel IRkernel R kernel for Jupyter IRkernel repr String and byte representations for all kinds of R objects ISA-tools Risa Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomi… ISAAKiel aRchaeomag Analyse geomagnetic data from archaeological context ISAAKiel aoristAAR R Package - Aoristic analysis of archaeological data ISAAKiel c14bazAAR R Package - Download and Prepare C14 Dates from Different Source Databases ISAAKiel magAAR Analyse geomagnetic data from archaeological context ISAAKiel mortAAR R Package - Analysis of Archaeological Mortality Data ISAAKiel oxcAAR R package - Interaction with Oxcal ISAAKiel quantAAR R Package - Quantitative Analysis in Archaeology ISAAKiel quantaar R Package - Quantitative Analysis in Archaeology ISAAKiel recexcavAAR R Package - 3D Reconstruction of Archaeological Excavations ISAAKiel shapAAR An R package (not only) for the extraction, analysis and classification of archaeological objects from scanned images ISS-Analytics modelr Natural-feeling domain-specific language for building PLS structural equation models ISS-Analytics seminr Natural feeling domain-specific language for building PLS structural equation models in R ISU-PrairiePlusPigs RuckmanMeta An R package containing meta data on the Ruckman Farm. ISU-STRIPS STRIPS A repository for STRIPS meta data and loading of all other public STRIPS data sets. ISU-STRIPS STRIPSArbuckle An R package containing STRIPS survey data ISU-STRIPS STRIPSHelmers An R packagae containing Helmers water quality for STRIPS ISU-STRIPS STRIPSHladik An R packaeg for Neonic data ISU-STRIPS STRIPSKolka An R package containing STRIPS data from the Kolka lab ISU-STRIPS STRIPSLiebman An R package containing Liebman lab data ISU-STRIPS STRIPSMeta An R package for STRIPS meta data ISU-STRIPS STRIPSONeal An R package for STRIPS data from the ONeal lab. ISU-STRIPS STRIPSSchulte A repository for STRIPS data from the Schulte lab. ISU-STRIPS STRIPSTyndall An R package containing economic data for the STRIPS project ISU-STRIPS STRIPSyield An R package containing STRIPS yield data ITHIM scenic ITSOusep open-source-patent-analytics IU-MMGE NCRAD IVFL-BOKU sentinel2 R Package to access the Data Service Platform for Sentinel-2 Surface Reflectance and Value-Added Products IVS-UZH RSplitsTree R SplitsTree wrapper IVS-UZH TypDB A collection of typological databases IVS-UZH familybias Family Bias Estimates IamKDO EpiCurve Epidemic Curve with R Iaroslav-Domin findlibs Iavalos Comfort Thermal Comfort IbtihelRebhi SensMap IgDAWG BIGDAWG Case-Control Analysis of Multi-Allelic Loci IgDAWG GLSconversion Genotype List String Conversion Tool IgDAWG GLSconvert Genotype List String Conversion Tool IlanaL1 utility.forecast Illumina happyCompare Reporting toolbox for happy output Illumina happyR R tools to interact with hap.py output IlyaKipnis DSTrading Digital Signal Trading (John Ehlers indicators) ImprovementPathSystems Hillmaker An R package wrapper to Mark Isken's python version of Hillmaker InSparklyR InstallSprCheck Installation Check InStreamFisheries PITR Functions to collate, manage and summarize PIT telemetry data IndianaCHE IndianaCHEmisc Miscellaneous Functions Useful for Indiana Commission for Higher Education IndianaCHE ggCHE Indiana CHE Theme for ggplot2 IndicoDataSolutions IndicoIo-R A simple R Wrapper for the indico set of APIs IndrajeetPatil ggstatplot IndrajeetPatil ggstatsplot InesdeSantiago BaalChIP InfProbSciX fancy A plotting & analysis companion for R. InfProbX r.fancy Plotting companion for R. InferenceTechnologies tableMatrix Infosys NIADataRConnector R package to allow access views created in Infosys Information Platform (IIP) InfrastructureAnalytics CapitalStocksFlows R package of capital stocks and flows data for Canada InfrastructureAnalytics amortization Estimates amortization profiles from acquisitions InfrastructureAnalytics analyticsDB R Interface to IAG's AnalyticsDB InfrastructureAnalytics portfolio A module to track the life cycle of assets InfrastructureAnalytics transformFIR A package to download and tranform Financial Information Return (FIR) data InnovationValueInitiative IVI-RA The IVI-RA individual patient simulation model InouyeLab BootstrapEQTL R package to correct for Winner's Curse in eQTL studies InouyeLab BootstrapQTL Bootstrap cis-QTL method that corrects for The Winner's Curse InouyeLab NetRep R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modules in one or more independent datasets through permutation testing. InsightRX PKPDsim Simulate PK-PD models defined as ODE systems InsightRX clinPK Equations and tools for clinical pharmacokinetics InsightRX json2test R library to allow tests and reference values for R packages to be specfied in JSON format InstitutCurie synerdrug R package for drug synergy estimation IntTreeR IntTreeR Interactive Classification Tree (CART) for R InternationalRiceResearchInstitute pedX R functions for getting useful information from pedigrees stored in gms IntiQuan NonCompartIQR This is a copy from the NonCompart package on CRAN. Some minor things have been improved and other things have been added to allow interfacing with IQRtools. IoannisVardaxis MACPET Ironholds WikidataR An R package for the Wikidata API Ironholds WikipediR R's MediaWiki API client library Ironholds averageimage An R package for creating composite PNGs or JPEGs Ironholds batman Convert categorical representations of logicals to actual logicals Ironholds birdnik Connector to the Wordnik API Ironholds cranlog A simple R package to read the CRAN download logs Ironholds crater Calling rust code from R Ironholds credit Better citation()s Ironholds driver Google Drive API client library in R Ironholds exif Read exif data into R Ironholds favnums A Dataset of Humanity's Favourite Numbers Ironholds geohash Geohash generation, decoding and manipulation in R Ironholds hail Read rainfall data from the HYDRA monitoring stations Ironholds humaniformat A human name parser Ironholds jammr Weaponised R Ironholds lucr Currency conversion and reformatting in R, including a connector to the Open Exchange Rates API Ironholds muckrock Data from the MuckRock project Ironholds mwparser A parser for Wikimarkup Ironholds olctools An R implementation of the Google Open Location Codes standard Ironholds olivr Oliver's personal R package Ironholds ores An API client for the Objective Revision Evaluation Service for Wikipedia Ironholds osi Client for the Open Source Initiative's API Ironholds pageviews An API client library for Wikimedia pageview data Ironholds poster Address parsing and normalisation through libpostal Ironholds practice A package for identifying other packages' adherence to software engineering expectations Ironholds primes Prime number testing and generation in R Ironholds protein Client library for the RCSB Protein Data Bank API Ironholds rdian Modern R client for the Guardian API Ironholds reconstructr Tidy tools for session reconstruction and analysis Ironholds rfc A web scraper for IETF Requests for Comment Ironholds rgeolocate Generalised IP geolocation through R Ironholds rwars An R client for the Star Wars API Ironholds threewords An R client library for what3words Ironholds triebeard Radix trees in Rcpp and R Ironholds udapi Urban Dictionary API client Ironholds urltools Elegant URL handling in R Ironholds webreadr A package for consuming and munging access log data Ironholds whoapi A client library for whoapi.com Ironholds wmf R package for internal WMF use. May contain useful functions for others too! Ironholds zebr A client library for The Setup's API IronistM RGlassdoor The R way to interact with Glassdoor API IronistM googleTagManageR An R package to interact with the Google Tag Manager API IshmaelBelghazi CMEtest Covariance Matrix Robust Estimation and Random Matrix Theory Filtering IshmaelBelghazi ThreePass Three Pass Regression Filter for R IshmaelBelghazi bigoptim Large Scale Machine learning Optimization through Stochastic Average Gradient IshmaelBelghazi gpuClassifieR CUDA and C linear classifier for R IvanVoronin mlth.data.frame IvanZoccolan valuer Pricing of variable annuities J-Moravec robustSystem catch stdout, stderr and exit code when running external application from R J-Moravec sighunt SigHunt: Tool for horizontal gene transfer detection. JAGoodrich jag Jesse's Commonly Used Convenience Functions JAQuent compareCorrelations JAQuent memoryROC A package to analyse recognition memory data within R. JARS3N 0 test JARS3N MissingFunds JARS3N PipeFish JARS3N adminKraken JARS3N asyr processing asyr files JARS3N axml JARS3N bufferfactor bufferfactor work JARS3N daemons spock daemons JARS3N details parse mv details.xml files JARS3N door door JARS3N dryqc wrangle and store dry qc data JARS3N fullcontactR R accessing the fullcontact.com API JARS3N git wrapping git functions in R because I'm lazy. JARS3N halp I just wanted a small place to compile somethings that i find useful but project neutral JARS3N instrument instrument related helpers JARS3N launch launcher for seastar scripts JARS3N lightleak munge lightleak data JARS3N outliers analysis on outlier specific testing JARS3N regQC JARS3N seascripts seastar scripts JARS3N seastar JARS3N shinyStar shiny apps to accompany seastar related packages JARS3N sortMV JARS3N testingshinything JARS3N timeconstant determine time constant of pH sensor JARS3N x0 test JARS3N xprt convert xfd -> asyr -> xlsx JBGruber LexisNexisTools An R package for working with files from LexisNexis JBrenn AnalyseGEOtop R package for GEOtop simulation analysis JBrenn DataBaseAlpEnvEURAC R Package providing functionality to easily access data JBrenn Helper4me R helper functions JBrenn RStudioAddins R Package adding personal RStudio Addins JBrenn SMCcalibration R package providing functionality for calibration of soil moisture sensors JBrenn SoilMoisturePattern JBrenn SpatialInterpol Spatial Interpolation of Soil Variables JBrenn TopoSUB R package - landscape clustering & land-surface modelling JBrenn mHMr JBrettas intercure Fits cure rate models to interval censored data JCPistell colinreverser a sample r package that reverses a string or number JClavel mvMORPH mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data JEFworks HoneyBADGER HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data JEFworks MUDAN Multi-sample Unified Discriminant ANalysis JEFworks badger Bayesian approach for detecting copy number alterations from single cell RNA-seq data JEFworks canvasXpressR canvasXpressR: an R package to help you share results with collaborators using canvasXpress JEFworks liger Lightweight Iterative Gene set Enrichment in R JGCRI GCAM-LAC-dashboard An interactive tool for exploring GCAM data with a focus on Latin America and the Caribbean JGCRI GCAM-dashboard Quick and easy data explorer for GCAM JGCRI GCAManalysis Analysis tools and algorithms for GCAM data JGCRI JGCRIutils Common utilities for JGCRI work JGCRI OA_variability Investigating variability in OA JGCRI RCMIP5 R scripts for processing CMIP5 data JGCRI fieldgenr Generate random global temperature fields with spatial and temporal correlation derived from an ESM JGCRI fldgen Generate random global temperature fields with spatial and temporal correlation derived from an ESM JGCRI gcamdata GCAM data system rewrite JGCRI gcamland Offline version of the GCAM land allocation module JGCRI gcammaptools R package for plotting GCAM data on world and regional maps JGCRI iamrpt Convert GCAM output to the format used by public IAM databases JGCRI rgcam R package for extracting and importing GCAM results JHMenegotto rcvmfundos Simple functions to get brazilian investment funds public data from the CVM system. JINPENG-WANG MafSelSweep JJKETO HyperNEAT JJNewkirk NOAAEQ JJNewkirk Rfars Package for week 4 Buidling R Packages coursework (via Coursera) JJNewkirk hurRicane assignment week 4 Building Visualization tools from Coursera. JLYJabc farsfunctions JMF47 DnMD JMF47 MDTS R package for detection of de novo deletions in targeted sequencing trios JMF47 recountNNLS Tx Abundance Using recount2 Summary Measures Visa NNLS JMF47 recountNNLSdata Necessary annotation to run recountNNLS JMLuther metabolicR Metabolic functions JMMaronge jmm.funcs Functions I find useful in my personal work JMMaronge medals Global PCA decomposition for local neighborhood moments package JMoon1 v2e JNiel intraMonthDist R package for intra month distribution JOSE-PASILLAS beta01 R package test JQVeenstra arfima Now updated prior to the version on CRAN. JQVeenstra jqveenstra.github.io JRichards1995 Changepoint JRichards1995 Changepoint.np JRichards1995 changepoint JSmith146 CoRpEx JT-R mnist.recognizer Digits recognition project JTapper CourseraWeek2 JUANCCI Epididact Some temporal analysis functions to explain changes in the model parameters JVAdams EchoNet2Fish Estimate fish abundance from acoustic echoes and net catch (R package). JVAdams GLFC Functions (R package) for the Great Lakes Fishery Commission's sea lamprey control program. JVAdams LW1949 An automated approach (R package) to Litchfield and Wilcoxon's (1949) evaluation of dose-effect experiments. JVAdams artiFISHal A pelagic fish community simulator (R package), which can be used to create artificial lakes and populate them with known numbers of fish, and then sample these fish with virtual acoustic and midwater trawl surveys. JVAdams jvamisc Miscellaneous utility functions (R package). JW3148 dbcompare Package compares data across SQL Server instances JWiley JWileymisc R package with miscellaneous functions and utilities JWiley pai R package to calculate personalized advantage index JWiley postMCMCglmm R package for post estimation from MCMCglmm. Predicted probabilities from MCMCglmm probit models JacekPardyak communicator JacekPardyak resume R package to build Resume and Cover Letter JacekPardyak resumeR Data Scientist Resume and Cover Letter Builder in R JackHTrn Sampling-from-Continuous-Distributions JackStat CompPack Functions for Computational Statistics JackStat Lambda4 Collection of Internal Consistency Reliability Coefficients. JackStat ModelMetrics Rapid Calculation of Model Metrics JackStat OCtesting Open Clinica Testing JackStat PValues JackStat THMisc Miscellaneous R functions JackStat WeibFit Collection of Functions for Fitting a Weibull Distribution. JackStat anapioficeandfire R package wrapper for anapioficeandfire JackStat cfb Collection of College Football scrapers and cleaners JackStat deckofcardsR R interface to deckofcards API service Jackie789 outlierInspect This is a simple package which helps the user to identify outliers in their microarray datasets JacobBergstedt mmi R package facilitating describing and fitting many models and getting information from them in a convenient form. JaehyunSong JPreadable Measuring Japanese readability JaehyunSong PRcalc Proportional Representation Calculator for R JaehyunSong cjointPlot Journal-like Visualization for cjoint Package JaehyunSong obi obi for R : A tool for measuring Japanese readability JahNorr icd JahNorr mortRecode Mortality Codes - ICD-10 JainVikas testingopcu Jake-Gillberg dgrdr Degree day calculaion in R JakeConway ClinPlots R package to create clinico-genomic charts JakeKlein BaseballDB JakeRuss sneezr An R wrapper for Pollen.com's Forecast API JakubBartoszewicz RImaGen An R package for voxelwise genome-wide association studies. JakubStats marge multivariate adaptive regression splines using generalized estimating equations (MARGE) Jamaneth RHomework JamasEnright FARS JamasEnright RCapstone James-Thorson CCSRA Software for implementing catch curve stock reduction analysis (CCSRA; Thorson and Cope 2014 Fish Res) implemented in Template Model Builder James-Thorson Conway-Maxwell-Poisson R package for calculating probability mass function or simulating draws from a Conway-Maxwell-Poisson distributimon James-Thorson FishData Compile and harmonize catch rates from fishery-independent surveys of fish populations James-Thorson FishLife Estimate fish traits for all marine fish species globally James-Thorson NLTS Nonlinear time series methods (Simplex + Smap) in R James-Thorson SebastesSteepness Steepness meta-analysis for West Coast rockfishes James-Thorson VAST Spatio-temporal analysis of compositional data, e.g., for expansion of length-composition data for marine fish James-Thorson length-based-spatial-regression regression model for spatial analysis of catch rates that are disaggregated by length James-Thorson movement_tools Computational tools for advective-diffusive movement on a grid or mesh James-Thorson spatial_DFA Spatial dynamic factor analysis, for estimating spatiotemporal density dependence in community dynamics James-Thorson spatial_condition_factor Spatial analysis tools for estimating spatial and spatiotemporal variation in individual condition James-Thorson spatial_delay-difference Spatial delay-difference model James-Thorson spatial_factor_analysis Spatial factor analysis: a tool for decomposing species density into a small number of latent maps James-Thorson spatial_production Spatial surplus production model James-Thorson utilities General-purpose tools for programming JamesDalrymple wccmh Washtenaw County CMH JamesEMcClure UpscalingToolbox JanCaha FuzzyAHP R package for calculation of (fuzzy) AHP JanMarvin disqusR R Package to access the disqus API JanMarvin nlsur R package for the estimation of nonlinear least squares for equation systems JanMarvin readspss Read the SPSS sav-file format JanMarvin resstars Package to create Coef and SE table for LaTeX. Requires a matrix printable for `printCoefmat()`. JanaJarecki ggsavejj JanaJarecki prospecttheory JanaJarecki themejj theme for ggplot JangSeonghoon maintcivil JangSeonghoon maintcivilWin JanineBrigitte myfirstpackage JannikVindeloev RAPr Japal MALDIquantExtra Extra functions for robust mass spec data pre-processing based on the MALDIquant R package and other helper functions Japal MALDIrppa Robust pre-processing of MALDI mass spectrometry data plus extra functionalities for data summaries and management. Japal cenGAM cenGAM Japal zCompositions Imputation of zeros and nondetects in compositional data sets Japhilko GPediting Package for Editing Gesis Panel Data Japhilko gosmd R-Package to download Openstreetmap data Japrin sscClust simpler single cell RNAseq data clustering JaredChung forecastml JaredSun26 pems An R package to process and work with 30s raw data from PeMS system JarkoDubbeldam RG R-Golf, codegolf functions for R Jaroken Trendster A shiny dashboard to explore time series packages from Twitter, Facebook, and Google using Google Trends JasonGregory dlearn Learn and model data. JasonHackney GSDecon Deconvolution using gene sets JasonHackney ReportingTools JasonR055 Harman An R implementation of Harman, a batch correction method for high-dimensional data JasonR055 HarmanData JasperHG90 RSoundCloud Soundcloud API wrapper functions in R JasperHG90 TenK An R package to scrape and process 10-K annual reports JasperHG90 qualtRics Download qualtrics survey data directly into R! JavierVillazan sumadosnumeros JayLKim farsCoursera JazminCevallos Package-Evaluation Package Evaluation Je-Ho poweranalysis Analyze Cycling Power Trainer Data Jean-Baptiste-Camps stemmatology An R stemmatology package Jean-Romain BilanGES Bilan gaz à effets de serre Jean-Romain RingDetection User interface and algorithm for automatic ring detection in wood density profiles Jean-Romain RingsDetection User interface and algorithm for automatic ring detection in wood density profiles Jean-Romain lidR R package for airborne LiDAR data manipulation and visualisation for forestry application Jean-Romain lidRExtra Extra functions for lidR package Jean-Romain rlas R package to read and write las and laz files used to store LiDAR data JeffreyBLewis Rvoteview R package to query Voteview US roll call voting database JeffreyRacine R-Package-crs R package crs (Categorical Regression Splines) JeffreyRacine R-Package-hr R package hr (Hansen-Racine Bootstrap Model Average Unit Root Test) JeffreyRacine R-Package-ma R package ma (Model Averaging) JeffreyRacine R-Package-np R package np (Nonparametric Kernel Smoothing Methods for Mixed Data Types) Jeiers MSDRcap-Package Mastering Software Development in R Capstone JeloH creating-a-simple-Heatmap-on-R-Studio a simple code for show our data as Heatmap figure using R language JenniNiku gllvm Generalized Linear Latent Variable Models JepsonNomad phenocosm This takes in a series of multi-layer raster files and returns a phenology projection raster. JepsonNomad phenomap This takes in a series of multi-layer raster files and returns a phenology projection raster. JeremySilver RandomThinning An R package for Monte Carlo tests for fixed-length periodic components in time-series JeroenSmaers evomap R package for evolutionary mapping of continuous traits JeromeAmbroise Pathogenomics JeromeAmbroise package-jeromenico JeromeAmbroise viRulence Jerry-Master Assignment4 JesJehle GEE2R JesseVent crypto Cryptocurrency Historical Market Data R Package JessicaSousa QualisR Qualis de periódicos do site do Sucupira JessicaSousa TestaPacote Jfortin1 ANTsR Stable release of ANTsR Jfortin1 EveTemplate JHU-MNI-ss (Eve) Template Jfortin1 Jipito Personal R package Jfortin1 MNITemplate MNI152 Template Jfortin1 RAVEL Imaging suite for the preprocessing and statistical analysis of MRIs in R Jfortin1 RAVELData Data package for RAVEL Jfortin1 RAVEL_data Data package for RAVEL Jfortin1 fsvd Fast SVD via randomization Jfortin1 shinyMethyl Interactive visualization of Illumina methylation array data Jfortin1 shinyMethylData Example dataset for shinyMethyl Jfortin1 tcgaR TCGA R Portal JhossePaul NOAACoursera JhossePaul coursera_fars Coursera's assignment on "Building R Packages" JhuangLab BioInstaller BioInstaller can be used to download/install bioinformatics tools, dependences and databases in R relatively easily. JhuangLab annovarR The annovarR package provides R functions as well as database resources which offer an integrated framework to annotate genetic variants from genome and transcriptome data. JhuangLab ngstk A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data. JhuangLab pannovar Parallel Annotate Next-generation Sequencing(NGS) Variants Data. JiachengHe TextAnalysis Jialab-UCR GDCRNATools GDCRNATools - An R package for downloading, organizing, and integrative analyzing lncRNA, mRNA, and miRNA data in GDC Jialab-UCR IIIandMe An R package for haplotype inference using genotypes of three haploid reproductive cells Jianeng FinReg Regularizing Bayesian Predictive Regressions JianhuaHuang streamit streamit JianhuaHuang streamlineR streamit JiantaoShi NetGPA Network-based gene prioritization analysis JiantaoShi NetORA Network-based pathway over-representation analysis JiantaoShi mHaplotype Analysis of DNA methylation haplotypes with mHaplotype Jiawei-Fu clusterinfer R package for statistical inference involving small cluster sizes JigarDesai14 ExRANGES Jim89 guerrillr repo for testing out creation of first R package - guerrillr JimGrange Van-Maanen-fp JimGrange flankr An R package implementing computational models of Eriksen flanker task performance. JimGrange trimr An R package implementing response time trimming methods JimJi1228 metaboo JimMcL trajr Trajectory Analysis in R JimMeister CourseraPackageR JimMeister capstoneJH JimMeister farsdata farsdata JimSkinner gpclassifier Gaussian Process Classifier implementation in R JimSkinner prangles R package providing single function for computing Principal Angles between subspaces JimSkinner spca JimSkinner stpca Jimmerkjaer Opgave Jimmerkjaer temp2 Temporary repository JinfengZ SBIC Sequential Biclustering for gene expression data JinmiaoChenLab ClusterX ClusterX: Fast clustering by automatic search and find of density peaks JinmiaoChenLab Mpath-analysis-of-human-pre-DC JinmiaoChenLab Rphenograph Rphenograph: R implementation of the PhenoGraph algorithm JinmiaoChenLab cytofkit cytofkit: an integrated flow/mass cytometry data analysis pipeline JinmiaoChenLab oneSENSE JinmiaoChenLab uSORT uSORT: A self-refining ordering pipeline for gene selection JinmiaoChenLab uSORT_analysis_data_code Jiramew stockCn Jishnurck26 logistic Jkang-alien Plos-One-Figure Jkang-alien TS Jkang-alien enhancer Jkang-alien podkat Jkang-alien shiny_try Jkang-alien ssGSEA4TCGA Jkassof rspotify JoFAM daprojects RStudio templates for data analysis JoFrhwld languageVariationAndChangeData JoFrhwld lsa2017 JoFrhwld multivariate2017 JoGall rubitrail Locomotory analysis of outputs from Ubitrail tracking software JoGall soccermatics Visualise spatial data from soccer player x,y-coordinates JoanViana devR devR is an R package which provides an R6class Workspace.R with methods to easy create and update an R package. JoanViana pvR JoanViana pvRsupeR pvRsupeR is an R package which provides a set of R6class with methods to easy work with TimeSeries. JoanViana pvRwork Workspace.R package easy create and update R packages Joe-Hilgard hilgard A package of personal convenience functions: Pooling SDs, converting between effect sizes, and extracting statistics from model objects for RMarkdown. JoeHarkness FARS Coursera FARS project JoeLugo cnvGSA This package is intended to facilitate gene-set association with rare CNVs in case-control studies. JoeyBernhardt oxygen Converts Between Oxygen Units JoeyBernhardt singer Excerpt from the Million Song Dataset as an R data package :musical_note: JoeyStanley joeyr Some functions I've written and have found useful. JohMueller twitterNet Package to Build Twitter Networks in R JohannesFriedrich EcoCounteR An R API wrapper for the Eco Counter project JohannesFriedrich HypeRIMU Reading sensor data from Android app HyperIMU JohannesFriedrich RLumModelShiny Shiny app for the R pacakge RLumModel JohannesFriedrich rxylibShiny A shiny package for the R library rxylib JohannesFriedrich senseBox A R API wrapper for the senseBox project. Download and analyse environmental data provided by John-Brandon CornHuskerCrime Has violent crime increased in Nebraska since neighboring Colorado legalized recreational marijuana in 2012? John-Brandon SARr Analyze Summary Tables for U.S. Marine Mammal Stock Assessment Reports John-Brandon pbrr R Code for analysis of PBR Tier System simulations John-GitHub Second Second attempt John-GitHub Test Talking to RStudio John-R-Wallace Imap Interactive mapping in R John-R-Wallace R-ToolBox My tool box of R functions. John-R-Wallace TMB-debug Debugger for windows machines when running Template Model Builder, developed by Kasper Kristensen JohnBuswell AusAddressR Geocode Australian addresses using GNAF dataset locally JohnBuswell Sample-Project-Xampp JohnBuswell ShinyTest JohnBuswell Stealing-Toms-Website JohnCoene bibler King James Bible in R JohnCoene billboard htmlwidget for billboard.js JohnCoene chartist chartist htmlwidget for R JohnCoene datamaps datamaps htmlwidget for R JohnCoene difflangr Differential Language Analysis JohnCoene echarts echarts for R - htmlwidget JohnCoene echarts3 htmlwidget for ECharts v3 JohnCoene fbadsinsightsr fbAdsInsightsR is an R package that allows fetching data from the Facebook Ads Insights API. JohnCoene fiveline Get limericks in R. JohnCoene flagr Include flags in your Rmarkdown or Shiny apps JohnCoene fullPage fullPage.js, pagePiling.js and multiScroll.js for shiny JohnCoene graphTweets Visualise networks of Twitter interactions JohnCoene langr Differential Language Analysis JohnCoene materializeR JohnCoene mdlr Material Design lite for Shiny JohnCoene oRion Integrates R and Cheetah Mobile's Orion Advertising platform. JohnCoene peity Peity R htmlwidget JohnCoene rindeed scrape indeed.com JohnCoene rodham Fetch Hillary Rodham Clinton emails JohnCoene shinybulma Bulma.io for Shiny JohnCoene tippy Tippy.js for R htmlwidget JohnCoene tweets2earth Plot tweets on Google Earth JohnCoene twility Utilities to analyse twitter conversations and followers JohnCoene typed typed.js R htmlwidgets JohnCoene uikit UIKit for R JohnCoene uvcharts uvcharts htmlwidget for R JohnCoene webutils Rmarkdown website utils JohnCoene youTubeDataR Integrates R and the YouTube Data API JohnCoene zingchart ZingChart htmlwidget JohnLangford vowpal_wabbit Vowpal Wabbit is a machine learning system which pushes the frontier of machine learning with techniques such as online, hashing, allreduce, reductions, learning2search, active, and interactive learning. JohnMount rquery Data Wrangling and Query Operators for R (moved to WinVector repository) JohnNay agp Agent Genetic Programming for Data-Driven Modeling JohnNay datafsm Estimating Finite State Machine Models from Data JohnNay eat Empirical Agent Training Software for Data-Driven Simulation Modeling JohnNay sa Sensitivity Analysis for Complex Computational Models JohnPickering risk-assessment-plot-package R package for Risk Assessment Plot and reclassification statistical tools JohnRPB openCPU_test a test repo for openCPU service JohnReid DeLorean R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experiments. JohnReid DeLoreanData Data for the DeLorean package JohnsonBrent gammabuster JohnsonBrent kimball JohnsonHsieh ChaoEntropy JohnsonHsieh ChaoShared ChaoShared JohnsonHsieh ChaoSpecies JohnsonHsieh IntroRMD JohnsonHsieh JADE_old JohnsonHsieh Jade JohnsonHsieh SpadeR Species Prediction and Diversity Estimation with R JohnsonHsieh iNEXT R package for interpolation and extrapolation JohnsonHsieh iNextPD iNterpolation and EXTrapolation for phylogenetic diversity JokingHero ORFik JokingHero rxtras JolienGay Notities Notities van Femke en Jolien (Project Cer 2016) JolienGay Voorbeeld Uitwisseling JolienGay useful-stuff Some useful stuff learned during the Cer2016 course. JonBohlin GAprediction JonBohlin predictGA predictGA -prediction of gestational age using DNA methylation data JonaCRC denseFLMM Estimation of functional linear mixed models for functional data sampled on equal grids based on functional principal component analysis. JonasGeschke NicheOverlapR Ecological niche overlap calculations JonasMoss metaanalysis Work on metaanalysis JonasMoss polygrams An R-package for dealing with polygrams, a class of non-parametric density estimators. JonathanBob passr A Random Password Generator JonathanMcGuire mhc Convenience functions for NSWMHC JordanBeary glpkAPI.DEA Data Envelopment Analysis using glpkAPI in R JorisChau moviesdemo moviesdemo JorisChau mvwavethresh JorisChau pdSpecEst pdSpecEst package JorisChau pdSpecEstv2 pdSpecEstv2 JorisChau pdwavethresh pdwavethresh Jorisvansteenbrugge TcT JoseCatano DemoR1 Primer demo en R JosephMcGrath fetchrr An R library to fetch and process external data sets. JoshuaSlocum kagglr Collection of helper functions to speed up the administrative bits of starting up a kaggle competition. JoshuaSlocum model-log Basic logging of models JoshuaTian ChAMP JoshuaTian EpiCluster EpiCluster Package JoshuaTian MyChAMP My First R package. JosiahParry cdtoolsxt extension to datacamp cdtools to clean feedback JosiahParry geniusR Easily access song lyrics from Genius in a #tidy format. JosiahParry multilogitpvals Calculates p-values for multinomial regression (nnet package) JovingeLabSoftware BioradConfig JovingeLabSoftware ExpSpect ExpSpect JovingeLabSoftware slinky Putting the Fun into LINCS data analysis. Requires LincServe backend JovingeLabSoftware sspcR JrEduardo CountReg R Package for Modelling Dispersed Count Data JrEduardo SensShiny Shiny Solutions for Sensory Experiments JrEduardo ce225-mlg Trabalhos elaborados na disciplina CE225 - Modelos Lineares Generalizados JrEduardo cmpreg Pacote R para ajuste de modelos de regressão COM-Poisson desenvolvidos no TCC JrEduardo gammacount R Package for Modelling Dispersed Count Data JrEduardo lce5813 Misc Functions and Docs for the Statistical Inference Course Jromero1208 PBDRiRF PBDR able implementation of iRF JuanAntonio03 PracticaR Juanjo-BCN ParseologTMG Función para el parseo de logs Microsoft TMG Juanjo-BCN Practica1 Jules-and-Dave Jules Jules-and-Dave binst Bin Stuff - a binning library for R JuliaPalacios coalsieve COALescent SImulation and Estimation in a Varying Environment JuliaWinchester auto3dgm-fork Fork of auto3dgm R package with optional specimen mirroring and quality of life modifications JulianSpagnuolo Bioscikit Collection of tools for calculations in life science labs. JulienGAMartin pamm_R Junfang AKSmooth Ajusted local kernel smoothing for bisulfite sequencing data Junfang Gimpute An efficient R based genetic data processing and imputation pipeline JungsooGIM LPEseq JungsooGIM PSARseq JungsooGIM familyRisk Juntai ransj R interface of ansj JunyanSong SCclust R Package: Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones Jurian bump.hunting Jurian nearest.neighbour Using the K-Nearest Neighbor (KNN) model to interpolate non-overlapping datasets in time and space Jurian subgroup.discovery R package implementing the PRIM algorithm JustinLingard rlaqn Tools for retrieval of data from the London Air API JustinMShea Fatality-Analysis-Reporting-System R package containing functions and data from the US National Highway Traffic Safety Administration's Fatality Analysis Reporting System (fars). JustinMShea fars Functions for data from the US National Highway Traffic Safety Administration's Fatality Analysis Reporting System (fars). JustinMShea neverhpfilter R package recreating econometric methods proposed in "Why You Should Never Use the Hodrick-Prescott Filter" by James Hamilton JustinMShea wooldRidge R package containing 111 documented data sets for the text "Introductory Econometrics: A Modern Approach" as well as a vignette containing example models from each chapter. JustinMShea wooldridge R package containing 105 data sets for "Introductory Econometrics: A Modern Approach". A vignette contains example models from each chapter. JustinZZW LipLibBuild a package to build lipid library based on sdf file JustinZZW LipidIMMS JustinZZW MetIMMS MetIMMS: tools for ion mobility mass spectrometry data processing JustinZZW ZZWtool ZZWtool: common tools in metabolomics data process Justinasban facedu Justinasban honors K-Meech kcat K2Analytics BinaryTargetViz K2Analytics LogisticModelTest A package for logistic model tests. K2Analytics logistic K2Analytics logisticmodelcreation K2Analytics logisticmodeldevelopment Logistic Model Development KCCG TxDb.Hsapiens.UCSC.hg19.ccdsGene Annotation database generated from UCSC, using CCDS (Consensus CDS IDs) KCIV GithubTesting No description or website provided. KCIV LotkasLaw Lotkas Law R Package KCIV Testing No description or website provided. KCIV VGheatmap A respositry for the R package VGheatmap which generates heatmaps for video game analysis. KDB2 amsReliability R package for reliability KDPerry DBMdevmod KDPerry DBMdevmod2 KDallaporta CapstoneProject KDallaporta FromRStudio KDallaporta TestPackage KDolos LandClimTools No description or website provided. KHartin newpackage KHartin test KIT-IfGG LandClimTools R-Package to work with LandClim KIT-IfGG NFItools Functions to support handling and analysis of national forest inventory data KIT-IfGG pets Simple simulation models to play with KKPMW annMatrix R Annotaded Matrix Object KKPMW matrixTests R package for performing fast hypothesis tests on rows / columns of a matrix or a data.frame KNIGHTTH0R RTwitterAPI KNIGHTTH0R linguo KNMI-DataLab SkyViewFactor Computation of the Sky View Factor for a point, a region and the whole Netherlands. KNMI-DataLab fogDec Automatic fog detection KNMI DutchClimate KNMI Hackathon-RDWD-QualityMonitoring Hackathon RDWD 2017 (June 12th - June 23rd) : Quality Monitoring KNMI knmiR Access to KNMI data KNMI knmitransformer KNMI scenarioIndices calculation of indices for the KNMI14 scenarios KOF-ch kofdata Get Data from the KOF Datenservice API KP156 Sor8erRM Sor8erRM KPdir foofactors Make factors less annoying KSheu ksheu.lib Useful functions KVHEM CatCa KVHEM hydrope An R-package for retrieval, manipulation, visualisation and analysis of data for hydrological modelling of European catchments KWB-R aquanes.report Collects, aggregates and visualises operational analytical data from water suppliers (including a standardised reporting document) KWB-R kwb.datetime R Package with Functions for Date Time Handling KWB-R kwb.default Get and Set Function Argument Defaults KWB-R kwb.dwa.m150 Read Sewer Condition Data according to DWA-M 150 XML format KWB-R kwb.hantush Calculation of groundwater mounding beneath an infiltration basin KWB-R kwb.plot R Package Containing Helper Functions for Plotting KWB-R kwb.qmra QMRA (quantitative microbial risk assessment) for water supply systems KWB-R kwb.test Test whether Different Functions Return the Same KWB-R kwb.utils some basic functions used by other kwb packages KWB-R kwb.wtaq Interface to WTAQ Drawdown Model (http://water.usgs.gov/ogw/wtaq/) Kafi1993 Explore Package for exploring (psychological) datasets Kafi1993 bacon_practise KalyanAkella snow My changes to the R SNOW package KamilSJaron ConjunctionStats The set of functions written in R created for parsing the output of the forsim. KanduriC GenRank Candidate gene prioritization based on convergent evidence KanduriC GenRank_updated updated GenRank just for build checking KanduriC GenomeBuildPredictor Predicts the genome build version of genomic track files, if any of the sequence coordinates in the input track file are unique to a genome build version Kange2014 dGSMEF A dynamic genome-scale modelling of E.coli fermentation Kanjali stencilRfunctions KarasiewiczStephane WitOMI KarchinLab cancerSeqStudy Analysis of statistical power and false positives for cancer exome sequencing studies Karel-Kroeze MCAT Multidimensional Computer Adaptive Testing in R Karel-Kroeze MultiGHQuad Multidimensional Gauss-Hermite quadrature in R Karel-Kroeze R2MIRT Helper functions for converting MIRT in/output to R data, and vice-versa Karel-Kroeze ShadowCAT Multidimensional Computer Adaptive Testing with the Shadow Testing routine Karel-Kroeze Utilities Personal utilities KarelCouceiro Doctrinne KarelMokany AdaptR KarelMokany test KarimOualkacha HHSVM-ClusterNet KarimOualkacha SmoothMSC A smoothed EM-algorithm for DNA methylation profiles from MethylC-Seq and reduced representation bisulfite sequencing data Karlos78 farspackage A repository for the 'Building R Packages' Coursera assignment KarlozF factorial2 KasperSkytte ksatools Tools to make my R life easier KateHyoung UTDEventData KateJohnson powers KateR-S linkedinApiTest KateR-S pastePath Tiny rstudio addin for windows file paths KateR-S similarity KatherinCajas Building-an-R-Package KathleenMartins DiscreteWeibull Modelo Weibull Discreto proposto por (Nakagawa e Shunji, 1975). KatieWill LittleChickens Katrinebch ExamST516 Exam for the ST516 course Katrinebch onsdag Exam project KayleaHaynes changepoint.np Methods for nonparametric changepoint detection KayleaHaynes changepoint.parallel Development package for parallel changepoint detection KeachMurakami dualband dual-band spectral imaging for plant science (e.g. NDVI, PRI, SR) KeachMurakami environ handling environmental logs KeachMurakami fudukue my workspace for writing, in particular scientific papers KeachMurakami gasexchangeR handle photosynthetic/respiratory gas-exchange data obtained by LI6400 series (LI-COR Inc.) KeachMurakami kagari organizes tidy data from messy data obtained using experimental devices KeachMurakami pri handles camera images to calculate photochemical reflectance index (PRI) KeachMurakami soroban a set of functions for data pre-processing KechrisLab HeritSeq KechrisLab multiMiR Development repository for the multiMiR database's R API Keefe-Murphy IMIFA Infinite Mixtures of Infinite Factor Analysers Keefe-Murphy MoEClust Model-Based Clustering with Gating and Expert Covariates KehaoWu Endnote2XLS Toylike tool to convert file to data.frame and text file. KehaoWu GWAScFDR KehaoWu Rmanhattanplot Provide function to plot manhattan plot in R. KehaoWu TextCNN KeithSpaar Github_Practice KeithSpaar usflyr KenaAjay fatalityanalysisr Software development in R Kenet96 libreria Keniajin protiniVis example Kenkleinman clusterPower the clusterPower package for R: simulating power and sample size calculations for cluster-randomized trials Kenkleinman rsatscan Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software KentonWhite HtmlTableReader KentonWhite esReader Elastic Search Reader for ProjectTemplate KentonWhite nmftm Creates a Topic Model of short texts using Non-Negative Matrix Factorization KentonWhite rsangole-201-rstudio KerrLab introbiocure KevCaz burningHouse Data, analyses and figures found in Legagneux et al. (2018) DOI: 10.3389/fevo.2017.00175 KevCaz decomposenumbers An R package that allows to split numbers into their components and to change from one base to another. KevCaz graphicsutils R functions that help creating and editing graphs with R. KevCaz recruitR A R package for plant recruitment analyses KevCaz seedlingsRecruitmentAnalysis Code for Solarik et al. XXXX paper Kevin-Brosnan cytowave A toolbox for the analysis of cytometry data KevinCrab Instant-Gas-Exchange-Measurements Credit to Dr. Wertin for applying this high-throughput measurement in Leakey lab. KevinKotze tsm Time Series Modelling KevinRPan handy Commonly used functions for working with data. KevinSee DABOM Dam Adult Branch Occupancy Model KevinSee PITcleanr Clean up PIT tag capture histories for use by DABOM KevinSee STADEM Estimate escapment across a dam KevinSee SiteAbundances Estimate abundance from mark-recap or depletion methods KevinSee damEscapement Estimate escapment across a dam KevinSee qRfish Estimate carrying capacity with quantile regression forests Keyeoh epian Annotation utils for EpiLab Keyeoh svconfound Keyeoh tigrisa KillianDudduss LeafletGoogle This is the repository created for the package Leaflet Google KillianDudduss leafletGoogle R Interface to google Leaflet Maps (this is an add-on to leaflet) KimByoungmo modefiedggmap copy source files KimByoungmo naverapi R package for Naver Open API King-County-Restaurant-Grading DineSafeR Kitetsu3rd Project1 Kkm5 EUFLOW Kkm5 WorkflowEval Kkm5 cats KlausVigo kknn Weighted k-Nearest Neighbors KlausVigo phangorn Phylogenetic analysis in R KlausVigo phangornMCMC A simple phylogenetic MCMC program KlausVigo popgenSim Simulations in population genetics models Knoema knoema-r-driver KodyGelvin STA485_2018 Hello! KoenSpoorenberg RaceTimePrediction Kohze Discovr Graphical clusters of a variety of statistical analysis methods Kohze Discovr_graphics the grahics widget of Discovr Kohze fireData Firebase + R KonScience Summarize-Flattr-Reports R script to create summary CSV file from Flattr's individual Monthly Revenue CSV files. KonoAnalytics KonostdlibR Kono Analytics standard R package of convenience functions. KonradZych phenotypes2genotypes Package for creating genetic map using gene expression data. KopfLab dpos KopfLab isoprocessCUBES KopfLab isoprocessorCUB CU Boulder specific version of the isoprocessor package KopfLab isoreader Read IRMS (Isotope Ratio Mass Spectrometry) data files into R KopfLab isorunCSIA package to facilitate compound specific isotope analyses including instrument performance evaluation, data processing, reduction and visualization KopfLab isorunner KopfLab isoviewer graphical user interface components for exploring isotope data KopfLab labware_c3 chemostat control center KopfLab lans2r Import and process Look@NanoSIMS data in R KopfLab tbltools Tools for Team-Based-Learning classrooms Kornkammer foodstorage Package with shiny-app for optimizing order cycles in food co-ops Krishanu1181 CollapseLevels KrishnaswamyLab phater PHATE dimensionality reduction method implemented in R KristianAM blm KristinaHelle sensors4plumes R package to optimise sensor networks for plume monitoring Kristoffer-r gittest Krysek myRTools myRTools Krysek spgl spgl KuanYang fars Kucharssim SRSA R Package for Successor Representation Scanpath Analysis KuiMing stfilter Kyoko-wtnb meRedith MEREDITH R package KyongsunPak IAbin L-Ippel SEMA Streaming EM approximation for random intercept models LAJordanger HVLstatistikk Some shiny-applications to be used when teaching statistics. LAJordanger UnderConstruction Experimental R code LAJordanger expRiments Temporary, investigating file hierarchy of compiled package. LAJordanger leanRcoding An R-package with Array-tools, Bookkeeping-tools and Coding-tools LAJordanger localgaussSpec Local Gaussian spectral densities, estimation and interactive visualisation LANL-Bioinformatics MetaComp No description or website provided. LAStarcevich TrendNPS R package for estimating trend from complex survey designs; developed for NPS LBNL-ETA RMV2.0 LCHansson dataLove A collection of high-level R functions to make data manipulation a breeze. Relies heavily on the Hadleyverse packages. LCHansson fuscata Programmatic storytelling with data frames (and some nifty helper functions) - EARLY WIP LCHansson iPlot An example of an interactive plot app - DEPRECATED LCHansson sliver A GUI for uploading data to an R session and launching iPlot LCHansson sweSCB A R package for accessing the web API of Statistics Sweden (a.k.a. SCB) LCR-BCCRC CHL26predictor An R package for applying the classical Hodgkin lymphoma (cHL) 26 gene predictor LDalby ALittleHelp A collection of functions that might help a friend get by LDalby DalbyTools R package to prepare GIS data for use in ALMaSS LDalby loggr Tools for handling and analyzing data from logger devices LDalby ralmass The ralmass R package LEilts RTutorBuildingCodes LIKANblk eyelinesOnline LMoisset projectlola LREN-CHUV hbpjdbcconnect R helper functions to connect to a database via JDBC LREN-CHUV hbplregress Linear regression for the MIP woken platform LREN-CHUV hbpsummarystats Summay statistics used to draw a boxplot over a dataset LREN-CHUV r-mip-adaptor R helper functions to connect to a database via JDBC LS31 clinicalcalculations A collection of R functions to perform basic clinical calculations in medical research. LS31 tibblesummary Quick summaries and summary graphs for data sets with the smallest amount of effort/code in R, leveraging the power of the tidyverse. LSFE LSFE-R R scripts LSRU TDbiostat2 LTLA InteractionSet Clone of the Bioconductor repository for the InteractionSet package, see https://bioconductor.org/packages/devel/bioc/html/InteractionSet.html for the official development version. LTLA SingleCellExperiment S4 classes for single cell experiment data LTLA TENxBrainData An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set. LTLA beachmat Ideas for a single-cell container and a C++ API for all matrices LTLA csaw Clone of the Bioconductor repository for the csaw package, see https://bioconductor.org/packages/devel/bioc/html/csaw.html for the official development version. LTLA diffHic Clone of the Bioconductor repository for the diffHic package, see https://bioconductor.org/packages/devel/bioc/html/diffHic.html for the official development version. LTLA giut Improved genome-wide IUTs LU-C4i R-package-MOOCs R package with functions to work with on-demand coursera export files LXQin CORM CORM (Clustering Of Regression Models) – cluster genes based on their relationship to sample covariates LXQin EquiNorm Normalize expression data using equivalently expressed genes LXQin precision an R package allowing users to conduct a simulation study for molecular classification with a unique pair of Agilent microRNA array datasets LXQin precisiondata an R data package to compliment the PRECISION package (https://github.com/LXQin/precision) LZoe AlexPackage LaDilettante icewsr Utility functions to query and manipulate data from the ICEWS database LaDilettante vietnamcode Vietnam province code LabNeuroCogDevel LNCDR LabTranslationalArchitectomics riboWaltz optimization of ribosome P-site positioning in ribosome profiling data Ladvien RHMIS An R package for manipulating Homeless Management Information System (HMIS) data as defined by Housing and Urban Development (HUD). Lagaillette RRicePackage Lakens TOSTER TOST equivalence test and power functions Lamarche-Perrin triversity An R package implementing diversity measures for multipartite graphs LamotheGilles MesFonctions A few functions for linear models LandascapeMetrics LandscapeMetrics LaplacesDemonR LaplacesDemon A complete environment for Bayesian inference within R LaplacesDemonR LaplacesDemonCpp C++ Extension of LaplacesDemon LaraUrban covRNA LaraUrban covRNA_test Larhn Ariane Gather Data Larhn Artemis fetch sdmx data Larhn Rilostat Larhn ilo View Data Larhn iloMicro LarsRichter82 larspack LasseHjort cuRe LauraBringmann tvvarGAM Time-varying vector autoregressive models using GAM LauraPS1 ChIP.GeneSets R package containing a list of GeneSet objects from ChIP-seq experiments LauraPS1 TFEA.ChIP TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes. Laurae2 Laurae Advanced High Performance Data Science Toolbox for R by Laurae Laurae2 LauraeCE Laurae's Cross-Entropy Optimization for R Laurae2 LauraeDS Laurae's Data Science R Package Laurae2 LauraeParallel Laurae's Parallel Load Balancing for R Laurae2 WindowsMT R Windows Multithreading Package Laurae2 lgbdl LightGBM Online Installer [ devtools::install("Laurae2/lgbdl") ] Laurae2 pkgdown Generate static html documentation for an R package Laurae2 tabplot CRAN's tabplot package, with a better version (no standard deviation) Laurae2 xgbdl xgboost Online Installer [ devtools::install_github("Laurae2/xgbdl") ] Lauren-Eyler ECforshiny ECforshiny Lauren-Eyler EconomicClusters Lauren-Eyler app_compare Lavin9 Package Lchiffon APItools API tools for R users Lchiffon Exercise Lchiffon GIStools Lchiffon REmap create a map by R Lchiffon Rweixin R语言与微信公众号接口 Lchiffon leafletCN An R gallery for China and other geojson choropleth map in leaflet Lchiffon newpage Lchiffon ngrokR ngrok tools in R, provide introspected tunnels to localhost. Lchiffon preReport Create data report before Lchiffon wordcloud2 R interface to wordcloud for data visualization. LearningToTalk L2TDatabase Helper functions for working with our lab's MySQL database LearningToTalk L2TWordLists R package to deal with data from our lab's word-repetition experiments LearningToTalk SegmentationData R S4 class and methods for segmented TextGrids created as a part of the Learning To Talk project LearningToTalk worldbet WorldBet to IPA Converter Leasle clusterFriend LeeKennedy dts.quality LeeeOh kaggle-titanic LeeeOh modeline LelandBarnard moddedChoro LeonardV restriktor An R package for (in)equality constrained estimation and hypothesis testing for the linear model Leonardini treeCentrality LeopoldoCatania GAS GAS models LeopoldoCatania eDMA Perform Dynamic Model Averaging with grid search as in Dangl and Halling (2012) using parallel computing. LewisLabUCSD RegressionModelPipeline Pipeline for feature selection, interaction assessment, regression modeling and prediction assessment for 1-1000s of features LiKao VoiceExperiment An R-Package for Offline Analysis of Spoken Responses LiLabAtVT CoReg LiNk-NY AnnotationForge LiNk-NY AnnotationHubData Clone from Bioconductor LiNk-NY GenomicRanges Cloned from Bioconductor LiNk-NY SummarizedExperiment Cloned from Bioconductor LiYanStat fingerprinting LiYanStat touch Tools Of Utilization and Cost in Healthcare LiaDD Fuzzy-Cognitive-Maps-FCMs Estimates the inference of a Fuzzy Cognitive Map (FCM). Provides a selection of 6 different inference rules and 4 threshold functions in order to obtain the inference of the FCM. LiamDBailey climwin An R package for detecting and analysing climate windows LiamMoorfieldYee Assignment-1 LiamMoorfieldYee LoMo LiamMoorfieldYee MoLo LiamMoorfieldYee mypackage LiangCZhang Rcess This package utilize the theory of economies of scale and scope (developed by Baumol, Panzar, & Willig (1982)) to generate the estimates of average output costs, economies of scale, and economiece of scope for different types of multi-output production industries. So far, this package can reproduce the estimates using FFCQ-M cost function (see Z… Libum guttman guttman R package for computing reliability of Guttman scales LieberInstitute jaffelab R package with commonly used functions by the Jaffe lab LieberInstitute recount.bwtool Fast coverage matrices from recount data using bwtool LieberInstitute shinycsv Interactively explore a table LifeWatchINBO uva-bits-etl ETL for UvA-BiTS tracking data LifeWatchINBO uvabits-warehouse Load UvA-BiTS tracking data into a warehouse Lifei-Wang modeltools Tools for modeling data LilithMoss bma.gxe BMA GxE Package LilyFG OWL A place for OWL code LimnoTech limnotools A home for functions that are useful for the LimnoTech R users community LinaQiu GapminderPackage Make it easier to see whether there is any linear relationship between pop/lifeExp/gdpPercap and year for countries in gapminder dataset LinaQiu foofactors Make factors less annoying LinaQiu packageForGapminder Make it easier to see whether there is any linear relationship between pop/lifeExp/gdpPercap and year for countries in GAPMINDER dataset Linda-Zhou PCA PCA analysis LindaNab mecor The mecor Package implements the measurement correction methods provided in the tutorial by Nab, Groenwold, Welsing & van Smeden. Lindros9203 mcbintest mcbintest – R package Lindskou ClassifyR ClassifyR LineeshT MyTestGit LineeshT mpg No description or website provided. Lingtax graphTemplate Borrowing liberally from John Sakaluk's Sak on Science blog, this package gives helper and template functions to generate ggPlots LinkerNetworks pmbq Pokemon Sightings Data Stored in BigQuery Linnmo WQschaumal LisaMaag QAS Quasi-analytical solution for logit Litier BKTSOM binary complete k-ary self organizing maps Litier CKTSOM Complete k-ary tree self organizing maps LiuZhiyang2333 prfazhiyangl Class project for CMU 94842 R Analytics LiubaNM TFARM R package for Postmine Association Rules Liubuntu SeqSQC sample QC for next generation sequencing data Liuy12 MBDDiff LiveOak NlsyLinks Utilities and kinship information for behavior genetics and developmental research using the National Longitudinal Survey of Youth (NLSY) LobsterScience bio.lobster Lobz facilitation A R/cpp framework for facilitation IBMs Logiwo tabulizer Looping027 far R package for modelization of Functional AutoRegressive Processes LorenzoRimella R-Geode R implementation of the hybrid Bayesian method GEOmetric Density Estimation, by Wang et al. (2016). LorenzoRimella RGEODE An R-package for scalable density estimation LorenzoRimella RGeode Losses losses.github.com Losses ls4pR This package WILL include most of the function you'll use during your university study. LottedeVos myfirstpackage LqNoob Machine-Learning-Evaluation-Metrics LuXiaoEei MWPCR-with-R Implementation MWPCR with R LuXiaoEei image-denosing-by-single-sided-local-linear-kernel-estimation image denosing by single sided local linear kernel estimation LuXiaoEei yangtiao the R package can be use to calculate the value of B-spline LuanCenci cilonio LucasBusta phyloChemistry An R package for phylochemical analysis LucasBusta phylochemistry LucasDowiak dynocopula Lucaweihs RIM Code for recursive inversion models for permutations Lucaweihs SEMID SEMID: an R package for parameter identifiability in linear structural equation models Lucaweihs TauStar A package for computing the t* statistic. Lucaweihs TestingRoxygen Lucaweihs sBIC Computing the Singular Bayesian Information Criterion LuchTiarna EFPFF Experimental framework for psychometric function's fit LuciaRG CollessLike Methods to compute distribution and percentile of balance indices of phylogenetic trees LuciaRotger CollessLike Methods to compute distribution and percentile of balance indices of phylogenetic trees LucyMcGowan GMD LucyMcGowan chicken Look at all those chickens! LucyMcGowan gifr Making gifs in R. Totally open to a name change LucyMcGowan googledrive LucyMcGowan parkhoppr Unofficial API for accessing Disney World wait times. LucyMcGowan polish LucyMcGowan sgpvalue LucyMcGowan tipr Luddo94 Package R package Luddo94 mySnps No description or website provided. LudvigOlsen LRO.utilities Utility functions for R and addins for RStudio LudvigOlsen R-splitters A set of functions for splitting dataframes and vectors in R LudvigOlsen bhappyr Amusing Sentences Generator. Amusing feedback to lighten the mood of statisticians. LudvigOlsen cvms Function for cross-validating gaussian and binomial models. LudvigOlsen groupdata2 R-package: Subsetting methods for balanced cross-validation, time series windowing, and general grouping and splitting of data. LudvigOlsen insertImage RStudio addin for inserting an image into Markdown with file chooser and copy the image file to the project. LudvigOlsen splitChunk RStudio addin for splitting R Markdown code chunks LudvigOlsen transfrr Add summary information from one dataframe to the dataframe that has been summarized, given only starting posititions of summarized groups. LueBecko juggerdata juggerdata Luis-Sanguiao StQT Class of transformations for StQ objects Luis-Sanguiao StQTFun LuisFilipe236 doAzureParallel LuisLauM LBR LuisLauM TBE Tools for Biomass Estimation LuisLauM biomRec Functions to reconstruct biomass from information of acoustic surveys. LuisLauM grec Classification of spatial patterns from environmental data through GRadient RECognition LuisLauM imagine Imaging Engine, Tools for Application of Image Filters to Data Matrices LuisLauM oXim Oxycline Index from Matrix Echograms LuisLauM popeProjection Make length projections using Pope method LuisLauM ruisu Toolbox for common activities in population dynamics LuisSousaSilva PART Portfolio Analyst R Toolbox Lukah0173 LDpack LukeBatten antarcticR Antarctica R package for visualisation, clustering etc LuyiTian scPipe a pipeline for single cell RNA-seq data analysis LyzandeR D2DF An R package which contains some independent functions LyzandeR RDota2 An R package that works as an API client for Valve's Dota2 LyzandeR colf An R package for Constrained Optimization on a Linear Function LyzandeR popPack An empty R package, which makes it easy to install some popular R packages LyzandeR tableHTML An R package to create shiny compatible HTML tables M-R-Sullivan fake_template M-R-Sullivan pvar M-R-Sullivan sandbox M3IT ggThemeViewer MAGDa-BeuthHS imputeData R package to fix gaps in time series data MARIU16 proyecto_master MC75ITALY CAPSTONE MC75ITALY farsclem Coursera Course "Building R Package" - Johns Hopkins University -Week 4 homework - Package to visualize FARS data MD-Anderson-Bioinformatics BatchEffects MD-Anderson-Bioinformatics GeneSurvey Gene Survey R package - take TCGA Standardized Data and make gene level cross-disease and sometimes cross platform comparisons and evaluations simpler to perform MD-Anderson-Bioinformatics NG-CHM MD-Anderson-Bioinformatics NGCHM-R An R library for creating Next-Generation Clustered Heat Maps (NG-CHM) MD-Anderson-Bioinformatics TANRIC MEF-BDA503 myFirstPackage her you can enjoy my toy package MEP-LINCS MEMA R Package with preprocessing, QA and normalizing functions for MEP-LINCS data METRICS-CARPS CARPSreports MG-RAST RBIOM MG-RAST matR Metagenomics Analysis Tools MGallow logitr logistic regression R package MGallow statr Personal R Package MGousseff r2spmf MHaringa spatialrisk R-package for spatial risk calculations MHenderson dhlawrencer An R package for D. H. Lawrence's novels. MHenderson funcgeo Functional Geometry in R MHenderson siskindr R package of Amy Siskind's weekly authoritarianism lists. MHenderson thomashardyr An R package for Thomas Hardy's novels. MHenderson yesno R wrapper for yesno.wtf (Yes/No as a service). MI2DataLab live Local Interpretable (Model-agnostic) Visual Explanations - model visualization tools for regression problems and tabular data based on LIME method. MIIS-META-Lab NetworkAnalysisMIIS MJAlexander distortr Functions to simulate and fit ARMA, P-splines and Gaussian processes MJomaba flu-evidence-synthesis Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques MKaptein OfflineBanditR [R] package for the offline evaluation of bandit policies MKaptein ofmlr R package for fitting online mixtures of logistic regression models. MMGhazanfar prfamghazanf First Package testing MMJansen MyWeek4Package Assignment for MOOC MOW16Z TANBayes MPBA nettools R package for network analysis MPBA r-sparcc R package computes correlation for relative abundances MPC24 fars2 MPC24 fars3 MPCary DEXDATA.Celegans C. elegans data files for DEXICA analysis MPCary DEXICA Deep Extraction ICA for Gene Module Prediction MPIIComputationalEpigenetics DeepBlue-R Package for accessing DeepBlue from the 2nd worst language in the world (shortly behind perl) MPIIComputationalEpigenetics DeepBlueR Package for accessing DeepBlue from R MPIIComputationalEpigenetics deepRtools R tools for the German epigenome program DEEP (DEutsches Epigenom Programm) MPIIComputationalEpigenetics epiRepeatR Analysis of the epigenomics of repetitive elements MPIIComputationalEpigenetics muPipeR An R package for managing analysis pipelines MRCIEU MRInstruments Data objects for various sets of instruments MRCIEU TwoSampleMR R package for performing 2-sample MR using MR-Base database MSU-CEDAR cedarmapper CEDAR project : Topological Data Analysis Tool using R and Shiny MSomics-StatTools MSomicsDATA MTHallworth LLmig MTZimmer RITAN Rapid Integration of Term Annotation and Network resources MTZimmer RITANdata R package containing data to support the RITAN R package MTiPatchSearch patchsearch PatchSearch R package MUSC-CGM PIMENTo Pipeline for Integrated Microarray Expression, Normalization Toolkit MUSC-CGM miRMapper MW89 testpckg1337 Test package for Coursera MYancheff myancheffpackage MYaseen208 DiallelAnalysisR Diallel Analysis with R MYaseen208 PSLM2015 MYaseen208 PakPC2017 Pakistan Population Census 2017 MYaseen208 PakPC2017GUI Graphical User Interface for exploration of Pakistan Population Census 2017 (http://www.pbscensus.gov.pk/). MYaseen208 PakPMICS2011Ch Multiple Indicator Cluster Survey 2011 Child questionnaire data for Punjab, Pakistan MYaseen208 PakPMICS2014 Multiple Indicator Cluster Survey 2014 Punjab, Pakistan MYaseen208 PakPMICS2014Ch Multiple Indicator Cluster Survey 2014 Child questionnaire data for Punjab, Pakistan MYaseen208 PakPMICS2014HH Multiple Indicator Cluster Survey (MICS) 2014 Household questionnaire data for Punjab, Pakistan MYaseen208 PakPMICS2014HL Multiple Indicator Cluster Survey (MICS) 2014 Household Listing questionnaire data for Punjab, Pakistan MYaseen208 PakPMICS2014Wm Multiple Indicator Cluster Survey (MICS) 2014 Women (age 15-49 years) questionnaire data for Punjab, Pakistan MYaseen208 StroupGLMM R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup MYaseen208 VetResearchLMM R codes and data sets for Linear Mixed Models. An Introduction with applications in Veterinary Research by Duchateau, L. and Janssen, P. and Rowlands, G. J. MableAnnoni hlpprojects HLP Evaluation Projects MacCampbell swainysmoother A method for detecting high Fst genomic regions adapted from Ruegg et al. (2014). doi:10.1111/mec.12842 MaciejDanko BootstrapLT MaciejDanko gotm MaciejDanko pclm PCLM MaciejDanko pclmpash MadeInR Gmisc Gayen's Miscellaneous Utilities for R MadeInR obsoleteValue Package for handling cached values (obsolete values) MadeInR store Store and Fetch Values (key value pairs) in R MadsAlbertsen ampvis A package to visualise amplicon data MadsAlbertsen ampvis2 Tools for visualising amplicon data MaggiK Programming MahShaaban MSDR Mastering software development in R capstone MahShaaban Rfastqc An R package to parse and manage text output of the sequencing quality control utility (fastQC) MahShaaban cRegulome An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer MahShaaban fars Coursra R packages capstone MahShaaban pcr Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data MahShaaban sqlome Build SQLite tables of microRNAs and Transcription Factors-gene Correlations Mahalanobis MalaUtils R utilities functions Mahalanobis PushTheButton R Machine Learning Automata Makoto1021 MakotoPackage MalathiSIDona pathDESeq MalditoBarbudo MedfateValidation MalditoBarbudo cvR MalditoBarbudo ggpic Using raster objects as geoms in ggplot2, only geom_bar at the moment MaleneJuul ncdDetectTools MalgorzataOles BloodCancerMultiOmics2017 MalgorzataOles pace MalteKurz pacotest R-package: Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas MalteThodberg ABC2017 Datasets and examples for Introduction to Advanced Topics in Bioinformatics 2017 MalteThodberg ABCdata Datasets for ABC 2015 MalteThodberg APhunteR MalteThodberg BEEF Batch Effect Estimation with fSVA (Frozen Surrogate Variable Analysis) MalteThodberg CAGEfightR Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor MalteThodberg ExtraAssertions MalteThodberg Shenzen2016 Datasets for Introduction to Advanced Topics in Bioinformatics 2016 MalteThodberg ThodbergMisc Utility Functions and Package Collections MalteThodberg coRe CoRe: Setup R on new machine MalteThodberg homeR homeR R-package Mamba413 Ball Statistical Inference and Sure Independence Screening via Ball Statistics ManchesterBioinference DEtime R package for two-sample time series analysis using Gaussian process methods MangoTheCat BLCOP Black-Litterman and copula-opinion pooling frameworks MangoTheCat GoTr R wrapper for An API of Ice And Fire MangoTheCat RNMGraphics NONMEM graphics MangoTheCat RNMImport Tools for importing and manipulating NONMEM data MangoTheCat autoPricing Automated glm pricing analysis for frequency and severity models MangoTheCat azuremlweb Call an AzureML web service from R MangoTheCat callr Call R from R MangoTheCat cranbrowser MangoTheCat cyclocomp Cyclomatic complexity of R functions and expressions MangoTheCat fftw3 FFTW3 Fourier Transform Library in an R Package MangoTheCat franc Detect the Language of Text MangoTheCat functionMap Draw the functions map for a R package MangoTheCat goodpractice Advice on R Package Building MangoTheCat install Install R packages from GitHub, BitBucket, etc. MangoTheCat keyring Access the System Keyring from R MangoTheCat mangoTraining R package containing datasets used for Mango Solutions training courses and for the book SAMS Teach Yourself R in 24 Hours. MangoTheCat myghrepos WIP! Generate a web site about your R packages at GitHub, tailored to MangoTheCat repositories MangoTheCat packageMetrics2 Collect Metrics about R Packages MangoTheCat pkgsnap (Re)install certain versions of CRAN packages MangoTheCat praise A R package to praise all the userRs MangoTheCat processx Execute and Control System Processes from R MangoTheCat radarchart Implementation of the radar chart from chart.js library MangoTheCat rcloud.solr Connect rcloud to solr MangoTheCat rcloud.support A minimal copy of RCloud's rcloud.support for developing rcloud.solr. MangoTheCat rcmdcheck Run R CMD check from R and collect the results MangoTheCat rematch Match regular expressions with a nicer API MangoTheCat rematch2 Tidy output from regular expression matches MangoTheCat remotes Install R packages from GitHub, Bitbucket, git, svn repositories, URLs MangoTheCat rmdshower R Markdown template for shower MangoTheCat rstack Minimal stack data type MangoTheCat sankey Sankey Diagrams MangoTheCat sasMap Static Code Analysis of SAS scripts MangoTheCat shinytest Unit tests for shiny apps — Work in Progress MangoTheCat shinytoastr Notifications in Shiny apps MangoTheCat showimage Show an image on the R graphics device MangoTheCat simplegraph Simple Graph Data Types and Basic Algorithms MangoTheCat slideBreakR An R package for splitting tables up over multiple slides using knitr, rmarkdown and slidy. MangoTheCat swli Star Wars Lorem Ipsum generator MangoTheCat testCoverage R Code Coverage Package MangoTheCat tidyshiny Interactively generate function calls for the tidyr package MangoTheCat tracer Slick call stack traces MangoTheCat visualTest Fuzzy testing of graphical files MangoTheCat webdriver WebDriver client in R — Work in Progress MangoTheCat xmlparsedata R code parse data as an XML tree ManifestoProject manifestoR An R package for accessing the Manifesto Project's Data and Corpus of election programmes ManoharPilli CSget R package to webscrape ManonMartin MBXUCL ManonMartin PAMMULAD ManonMartin PEPSNMR R package for 1H-NMR data pre-treatment ManonMartin PepsNMR R package for 1H-NMR data pre-treatment ManonMartin SOAP-NMR R package for 1H-NMR data pre-treatment MansMeg PerspectiveTopicModel Perspective Topic Model MansMeg markmyassignment A R package for automatic marking of R assignments/labs. MansMeg msgProgressBar A statusbar for R using message() MansMeg rlexswesent An R-package for the Swedish sentiment lexicon from Språkbanken MansMeg simplify A R package that contains function to ease my working process MansMeg slurmr Repository containing functionality to generate batch files for slurm cluster system MansMeg tidytopics Topic modeling toolbox for R based on tidytext and dplyr MansMeg topicmodeltoolbox A toolbox for working with topic models in R MansMeg valfilr R-paket för att hantera valmyndighetens valresultatfiler. ManuSetty ChIPKernels ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. ManuSetty SeqGL SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles ManuelGoepferich Basic_R ManuelGoepferich LINC LINC - Co-Expression Analysis of lincRNAs ManuelGoepferich LINC_before_DEVEL LINC - Co-Expression Analysis of lincRNAs ManuelGoepferich LINC_justlinc ManuelGoepferich MASTER ManuelGoepferich R-advanced ManuelOrdovas REVTool PUBMED CSV to EXCEL ManyLabsOpenScience manylabRs Mapsred ShinySEO MarauderPixie code-ish No description or website provided. MarauderPixie ddateR MarcGumowski dysefamor dysefamor: Estimation Algorithm of Dynamic Semiparametric Factor Model MarcLavielle mlxR mlxR MarcinKosinski RZabbix RZabbix is an R module for working with the Zabbix API. MarcinKosinski Simulations MarcinKosinski archivist.github Reproducibe research sync with GitHub MarcinKosinski coxphSGD Stochastic Gradient Descent log-likelihood estimation in Cox proportional hazards model MarcoDVisser AskR Ask R all those important life decisions MarcoDVisser FDPtools Tools for working with forest dynamics plot data MarcoDVisser GrAid Custom functions for publication grade graphics in R MarcoDVisser IPM2s Two stage Integral Projection Models MarcoDVisser MCMCR Markov Chain and Monte Carlo methods in R MarcoDVisser aprof Amdahl's profiler, directed optimization. MarcoDVisser choosecolor A quick and easy way to choose colors in R MarcoDVisser dMCMC Markov chain Monti Carlo diagnostics dMCMC MarcoDVisser rML routines for Machine Learning in R MarcoDVisser stoicfortunes Stoic maxims as an R fortunes packages MarcoDVisser zil The Zero Inflated Laplace Distribution MarcoLugo CANSIM2R Extract CANSIM (Statistics Canada) tables and transform them into readily usable data in panel (wide) format. It can also extract more than one table at a time and produce the resulting merge by time period and geographical region. MarcoNiemann kaggle_house MarcooLopez METAR Multi Environment Trial Analysis R package MarenS2 pwOmics MarenS2 pwOmics_maren MargaretBaker plantGlycoMS plantGlycoMS contains R functions and workflows for analyzing plant glycopeptide mass spectrometry data. MargotBr AgreeClust Agreement-based unsupervised clustering of a set of ratings through a latent class regression modeling framework MargotBr BinQmet Statistical analysis of binary Q-method data MariaSchaarschmidt chaukgeomorph MarianNecula rTempo R interface for Tempo Online MarianneMenictas multiMFVB Mean field variational Bayes MarieAugerMethe CCRWvsLW R package to compare the TLW to a CCRW MarieEtienne MixtLiP MarieEtienne segTraj MarieRitterUva ProgrammingNextStep MariekeDirk GeoInterpolation GeoInterpolation methods MariekeDirk Reproducability-Reusability-course Crash Course on Git, Github, Documentation of R code, Combining Rstudio with GitHub and Travis CI MariekeDirk Reproducibility-Reusability-course Crash Course on Git, Github, Documentation of R code, Combining Rstudio with GitHub and Travis CI MariekeDirk Solar-Radiation-Europe MariekeDirk myfirstpackage MarineEcosystemResearchProgramme merpData Functions to manipulate UK marine data MarineEcosystemResearchProgramme merpWS Functions to access marine data via existing web services MarioGS NMI MarioGS NMImport NM MarioJose nicheApport Simulate and fit, using Monte Carlo approach, rank abundance distribution to niche apportionment species abundance distributions models. MarioniLab DropletUtils Package for handling droplet-based single-cell RNA-seq data MarioniLab cydar Clone of the Bioconductor repository for the cydar package, see http://bioconductor.org/packages/devel/bioc/html/cydar.html for the official development version. MarioniLab scran Clone of the Bioconductor repository for the scran package, see https://bioconductor.org/packages/devel/bioc/html/scran.html for the official development version. Maritimes FGP This package contains functions to assist with the extraction of data from the Canadian Federal Geospatial Platform. Maritimes Mar.datawrangling A suite of tools for extracting, filtering and aggregating data from the Maritimes fisheries science databases Maritimes Mar.odissupport This package contains services that pull data from various PED systems and convert it into formats appropriate for further distribution by ODIS (e.g. geodatabases, csv, etc) Maritimes Mar.qcdata Designed to perform QC functions on various Maritimes fisheries science databases Maritimes Mar.stranal Stratified Numbers at Length Maritimes Mar.utils Functions commonly used by packages owned by Maritimes Maritimes bio.datawrangling Facilitates the extraction and handling of data from various sources, including groundfish, observer, marfissci and other sources Maritimes bio.odissupport This package contains services that pull data from various PED systems and convert it into formats appropriate for further distribution by ODIS (e.g. geodatabases, csv, etc) Maritimes bio.plotting Maritimes bio.portsampling A suite of tools for Port Samplers Maritimes bio.qcdata Designed to perform QC functions on various Maritimes fisheries science databases Maritimes odissupport This package contains services that pull data from various PED systems and convert it into formats appropriate for further distribution by ODIS (e.g. geodatabases, csv, etc) Maritimes portsampling A suite of tools for Port Samplers Maritimes qcdata Designed to perform QC functions on various Maritimes fisheries science databases MariusBreitmayer AttributeTradeOffs Bachelor Thesis RTutor ProblemSet MariusBreitmayer RTutorAttributeTradeOffs Bachelor Thesis RTutor ProblemSet MarkEdmondson1234 bigQueryR R Interface with Google BigQuery MarkEdmondson1234 gentelellaShiny http://code.markedmondson.me/gentelel… MarkEdmondson1234 googleAnalyticsR A new Google Analytics R library using googleAuthR and v4 of the reporting API MarkEdmondson1234 googleAnalyticsR_public A new Google Analytics R library using googleAuthR MarkEdmondson1234 googleAuthR Google API Client Library for R. Easy authentication and help to build Google API R libraries with OAuth2. Shiny compatible. MarkEdmondson1234 googleCloudStorageR Google Cloud Storage API to R MarkEdmondson1234 googleID Authentication and identifying Google users using Google+ API MarkEdmondson1234 googleLanguageR R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API MarkEdmondson1234 googleMeasureR Send tracking hits to Google Analytics from R code using the Google Analytics Measurement Protocol MarkEdmondson1234 googleanalyticsv3.auto Google Analytics API MarkEdmondson1234 googlecomputev1.auto Compute Engine API MarkEdmondson1234 googlegmailv1.auto Gmail API MarkEdmondson1234 googlepeoplev1.auto Google People API MarkEdmondson1234 googlestoragev1.auto Cloud Storage JSON API MarkEdmondson1234 googleurlshortenerv1.auto URL Shortener API MarkEdmondson1234 gtmR MarkEdmondson1234 predictClickOpenCPU Code for the prediction example from user webpages MarkEdmondson1234 searchConsoleR R interface with Google Search Console API v3, including Search Analytics. MarkEdmondson1234 semRushR Access the SEMRush database MarkEdmondson1234 shinyga shinyga - Shiny Google Authentication. Quick start user authentication for Google Analytics MarkEdmondson1234 stripeR Interface between Stripe API and R MarkEdmondson1234 youtubeAnalyticsR YouTube Analytics API into R MarkJBrewer ICsims Simulations for studying prediction performance of different information criteria MarkJBrewer plateau Fit plateau climate envelopes in species distribution models for presence/absence data MarkPlatts mser Package to produce standard plots and tables required for a Management Strategy Evaluation Project MarkSelby1992 RCluster A simple R package for clustering MarkoLebo FindOri MarkusBonsch mxLSTM LSTM models for regression analysis with mxNet MarkusLoew CampbellLogger Functions to import, merge, and visualise Campbell Scientific *.dat files. Might be specific to my project. MarkusLoew Environdataimport R package to import weather data files from "Environdata" weather stations MarkusLoew GlasshouseClimateImport Import climate data from Creswick glasshouses .DAT files MarkusLoew HH2 R package to import soil moisture data files from HH2 handheld moisture meter MarkusLoew MyEllipsefit Convenience package using conicfit to calculate an elliptic fit to data. Provides ellipsis parameters (axes, angle, area, and more). MarkusLoew MySensorCorrect Correction functions for my self-built temperature and relative humidity sensors MarkusLoew ReadAxfBOM Import a weather station observation axf-file downloaded from a Australian Bureau of Meteorology station MarkusLoew importZIM R function to import YARA ZIM sensor files, extracts sensor ID information from the sensor name MarkusLoew lmediaplots R package to create diagnostic plots for nested lme objects. Convenience function to access plot.lme etc. MarkusN-fr ordijuice2017 Implementation of new functions in the original "ordijuice" code (provided here: https://github.com/zdealveindy/ordijuice) in the context of a study-related internship. Marlin-Na TnT Interactive visulizations for track-based genomic data in R Marlin-Na reactFunc Build cacheable function with reactive expression https://marlin-na.github.io/reactFunc Marlin-Na symengine.R A R interface to the symbolic manipulation library SymEngine. Marlin-Na trewjb Access TREW Genome Browser MarloesEeftens EMFtools Helpful tools for research on the epidemiology of electromagnetic fields. MarloesEeftens LUR Land use regression tools for environmental epidemiology MarloesEeftens NOISEtools Helpful tools for environmental noise measurements and research. MarniTausen BayzR R package of bayz, which is a Monte Carlo Markov Chain implementation of linear mixed models created by Luc Janss MarselScheer simTool An R-Package that facilitates simulation studies MartinFXP B-NEM Boolean Nested Effect Models - http://bioinformatics.oxfordjournals.org/content/early/2015/12/14/bioinformatics.btv680 MartinFXP DawnRank driver gene identification algorithm DawnRank 2014 MartinFXP bnem Boolean Nested Effect Models - http://bioinformatics.oxfordjournals.org/content/early/2015/12/14/bioinformatics.btv680 MartinHinz quantaar R Library for Quantitative Analysis in Archaeology MartinHinz roxcal R package for the communication with Oxcal MartinHinz shapAAR An R package (not only) for the extraction, analysis and classification of archaeological objects from scanned images MartinKies RLR Reinforcement Learning with R MartinKies USLR Unsupervised Learning with R MartinLBarron MBrUtilities Simple R Utilities MartinLBarron freqR R package to produce frequency Tables as part of dplyr workflow MartinMSPedersen DanishReferendums R packages with datasets for some danish referendums MartinMSPedersen folkeafstemninger MartinPons fars MartinRoth eobsR MartinRoth evanHelpers MartinRoth fogDec Automatic fog detection MartinRoth fortranClustering MartinRoth gevflex Flexible gev estimation MartinRoth gpdIcm MartinRoth knmiR Access to KNMI data MartinRoth knmipluim MartinRoth knmitransformer MartinRoth potreg MartinRoth regthresh Regional threshold selection MartinRoth rqIcm Isotone quantile regression using the iterative convex minorant algorithm MartinRoth visDec Visibility/Fog Detection MaryHe First-Package-of-Mary MaryLvV mvfars functions for working with Fatality Analysis Reporting System (FARS) data (Coursera assignment) Maryberry -hmk2 MasakiLin RNASeqDesign MasimovR VARCP Masutani satobjextract Ground object extractio from satellite image MatMatt MODIS R package MODIS development branch MateuszZaremba ALHE Mathatistics simrel Simrel Package using R6 Mathelab ALTRE ALTered Regulatory Elements Mathelab RaMP-DB Matherion metabefor Matherion userfriendlyscience The R userfriendlyscience package Mathias-Fuchs simTestSize A tool which computes the optimal test set size in simulation studies on supervised machine learning MathiasAmbuehl maPack utility R functions MathieuEmily EpiTag TagSNP selection for epistasis MathieuEmily GeneGeneInteR Tools for Testing Gene-Gene Interaction at the Gene Level MathieuEmily IndOR Testing for SNPxSNP Interaction MathieuEmily SMILE Detecting subpopulation under selection in a genomic region MathieuEmily SpatialClustering Detection of clusters of bi-dimensional points MathieuMarauri auditdata R package to perform a quality check on a table MathieuWeill MathieuWeill.github.io MathieuWeill developpingdataproducts No description or website provided. MathurinD STASNet STASNet R package, performs a modified version of MRA to reverse engineer signalling networks. MathurinD extractlxb Wrappers around the lxb library to process lxb files into MIDAS files for STASNet Matt-Brigida EIAdata R Wrapper for the Energy Information Administration (EIA) API MattKelliher-Gibson ModelEvalr An R package for help executing, evaluating, and comparing models MattKelliher-Gibson prepr An R package for preparing data for analysis MattKelliher-Gibson r2sas For prepping r data to be imported into SAS. MattKelliher-Gibson rsetup create setup file in r MattMyint ezSingleCell GUI implementation for Seurat using shiny MattWiener heemodFits MatthewHeun byname Matrix mathematics in R that respects dimnames and provides row and column types MatthewHeun matsindf Work with matrices in R data frames MatthewL48 MattsTestProject This is a Test Project MatthewSchumwinger mkedata mkedata MatthewSchumwinger wundr wundr MatthewSmith430 CompaniesHouse This package allows to extract data from the Companies House API and create interlocking directorates networks MatthewSmith430 GVTr Creates a Global Value Tree (GVT) from World Input-Output Data MatthewSmith430 ITNr International Trade Network Analysis in R. This package can clean and transform international trade data from WITS (http://wits.worldbank.org/) into a international trade network and undertake descriptive analysis MatthiasHinz SpatialSemantics An R package for capturing semantics and provenance of spatio-temporal data analyses MatthiasLienhard qsea QSEA bioconductor package MatthieuStigler aa MatthieuStigler partsm R package for Periodic Autoregressive Time Series Models MatthieuStigler tsDyn tsDyn MattisvdBergh LCT MattjCamp Coder R package that helps you write code MattjCamp DataPoints Makes it easy to switch between long and wide format datasets MattjCamp Database R objects for SQL Server, Amazon Redshift and SQLite databases MattjCamp RHelpers Shortcuts and useful functions that don't fit anywhere else but I still use all the time. MattjCamp coderr A super-simple code generator MattjCamp cohortr Tidy grammar, resources and shortcuts to help you look at cohorts for education research MattjCamp datapointsr Painless statistical table QC analysis MattjCamp dbr Quick functions and common interfaces for SQL Server, Amazon Redshift and SQLite databases MattjCamp loadcheckr Compare rows, data types and content in two tables in two data connections MattjCamp overridesr Package overrides a few R functions and adds utility functions MattjCamp wicher School enrollment forecasts from The Western Interstate Commission for Higher Education MaurizioInDenmark RTest R test Mavbegg MIAMI Net primary production (NPP) estimation from temperature and precipitation data Mavbegg SOMmodeval R port of the MODEVAL 2.0 spreadsheet by Smith & Smith MaxSunshine CourseraWeek2 MaxSunshine Earthquake MaximeRivest scimeetr Scientometric Meet R MaximeWack R2b2 R package to manage an i2b2 instance and import data MaximeWack cosmosR Generate HTML exploratory summary, descriptive and comparative tables MaximeWack desctable An R package to produce descriptive and comparative tables MazamaScience MazamaSpatialUtils MazamaScience MazamaWebUtils Utility functions for building web based databrowsers. MazamaScience NBI R package for working with data from the National Bridge Inventory MazamaScience PWFSLSmoke R package for Working with PM2.5 Monitoring Data MazamaScience wildfireSmoke An R package for analysis of model and monitoring data related to wildfire smoke. Mazda-GPI modelid McClellandLegge addressr R utilities to leverage the USPS APIs for verifying addresses McClellandLegge netmathtools Tools for NetMath Mentors McClellandLegge netmathtools2 Automated NetMath Student Tracker McClellandLegge plenar Data Extraction to R from Plenar.io's API McDowellLab loadflex Models and Tools for Watershed Flux Estimates McKayMDavis look If you hate typing capital "V" in View().....look() McKayMDavis spaov Split Plot ANOVA package for R MckEatt intensitynet Network intensity functions for point patterns over planar networks Mdhaker Rdatacollector an R package for data collection MeanerReversion bdrift bdrift MeanerReversion fundamental MeenaChoi MSstats R package - MSstats MehreenRuhi newfusedlasso Melinae TabularManifest Perform EDA quicker using configure files Melkiades CampaRi CAMPARI analysis tools in R Mendyvandervliet HourlyPrecipExtr Hourly precipitation extremes Menghao-diandian NormalBacterialGraphicalUsage A R package which can cover normal graphical usage in Menghao's current researches in bacterial experiment. Menghao-diandian SNPfreq Mengjie4FED CPSC499 MengjunWu TCseq An R package for time course sequencing data analysis Menglinucas House-price_wins used for wins Menglinucas HousePC Menglinucas HousePC_serial-parallel MengtingLi1010 mtl Meowllo shopcade Merguerrero BasicP MerrimanLab merrimanR An R package containing useful functions MeteoSwiss easyVerification Simplify application of forecast verification metrics to large datasets Metlover similarityTool R package of similarity tool methods for use in comparing players batted ball and offensive peripheral profiles MetoriGitHUB rbag R Library with utilities for data sources and reporting MiGraber myTestPackage MiKatt openSTARS open source implementation of the STARS ArcGIS toolbox Miachol BioInstaller BioInstaller can be used to download/install bioinformatics tools, dependences and databases in R relatively easily. Miachol configr Implements the JSON, INI, YAML and TOML parser, for R setting and writing of configuration file. MichFredricks IneQuant Library for quantitative analysis of economic inequality MichaelChirico funchir R package of convenient functions MichaelChirico texr Simple but extensive functionalities for passing R objects to TeX MichaelChirico vcov Faster methods for getting vanilla variance-covariance matrices and standard errors from models MichaelChirico vw R package for integrating Vowpal Wabbit to an analysis pipeline within R MichaelFinger ata R code (lpSolve "wrapper" functions) for automated test assembly/optimal test design modeling MichaelFolkes PBSperformance An R package for performance analysis. MichaelFolkes VRAP2 A Fork of the NMFS's VRAP Package for RER and population viability computations MichaelFolkes ctctools An R package for analyses performed by the Chinook Technical Committee (CTC) of the Pacific Salmon Commission (PSC). MichaelHoerner groupedtseries Time series analyses allowing for analyses of grouped time series MichaelJMahometa SDSRegressionR SDSRegressionR MichaelMalick r-chroma An R package for creating consistent color palettes using the HCL color space MichaelMalick r-codatools An R package to extend the usefulness of CODA MCMC diagnostics MichaelMalick r-jagstools An R package to conveniently run JAGS in parallel from R MichaelMalick r-malick An R package containing random but personally useful functions MichalMiko6211 careerpaths MichalMiko6211 skillsmatch MichalMiko6211 skillsmatching MichalMiko6211 skillstocaps MichalMiko6211 skillsuggestions MichelMeyer package Base para o pacote com os dados da cvm e da bovespa sobre as ações negociadas na bolsa. MicheleNuijten BayesMed Default Bayesian hypothesis tests for correlation, partial correlation, and mediation MicheleNuijten statcheck MichelleKendall phyloTop Calculating Topological Properties of Phylogenies MickaelJRPerrier iTrackR An eye-tracking data visualization package for R. MickyDowns IoT_particulate_matter analysis of fine particulate mater (pm2.5) produced from U.S. emission sources from 1999 to 2008. MickyDowns central_limit MickyDowns estimate_mpg MickyDowns fin_weather_damage MickyDowns mine_algorithms code implementing data mining algos (svm, boosting, random forest knn, etc.) on sonar data set. good for comparing strengths/weaknesses of each algo. MickyDowns mine_search_results MicroWearR MicroWeaR MicroWeaR is a package to examine and score microwear scars in a semi-automatic way Microbiology sportcolors Color palettes from popular sports teams. Microsoft AzureSMR R Package for managing a selection of Azure resources. Targeted at Data Scientists who need to control Azure Resources without needing to both Administrators. APIs include Storage Blobs, HDInsight(Nodes, Hive, Spark), ARM, VMs Microsoft CEO_CE_Stage_InTuneDocs-pr_ Microsoft CNTK-R R bindings to the CNTK library Microsoft PiSoccerBot Microsoft SCCMDocs.de-de Microsoft SCCMDocs.es-es Microsoft SCCMDocs.fr-fr Microsoft SCCMDocs.it-it Microsoft SCCMDocs.ja-jp Microsoft SCCMDocs.ko-kr Microsoft SCCMDocs.pt-br Microsoft SCCMDocs.zh-cn Microsoft SCCMDocs.zh-tw Microsoft deployrUtils Develop Portable R Code for Use with DeployR Microsoft skytest_el-GR Microsoft skytest_fi-FI Microsoft trustcenterchina-sandbox.ar-ae MigueBeneito Final Final Activity for the R packages Coursera course MigueBeneito Pbugs MikeGruz kripp.boot R function to perform bootstrap resampling on intercoder reliability data for Krippendorff's alpha statistics MikeJSeo network-meta Network meta analysis for simultaneous comparison of multiple treatments in health care evaluations MikeJSeo nof1 Single patient (N-of-1) trial that would give individualized recommendations to each patient on which treatment has highest chance of improving their conditions MikeKSmith MSToolkit MSToolkit v3 MikeKSmith metrumrg Automatically exported from code.google.com/p/metrumrg MikeKSmith rspeaksnonmem R package for working with and executing NONMEM control files, also integrating PsN MikeMorris89 rmm Various R functions. MikeNWeiss srkw.nonkin.sna An R package for analyzing SRKW social networks using ERGMs MikePJones Week4Proj Coursera Building R Packages Week 4 Assignment MikeXL bayes Have fun being baysianism MikeXL espResso Having fun on caffeine / coffee / tea analysis MikkoVihtakari MarineDatabase Import data to Norwegian Polar Institute's marine database MikkoVihtakari PlotSvalbard Plot research data from Svalbard on maps MikkoVihtakari sclero R package to measure growth patterns and align sampling spots in photographs MikkoVihtakari seacarb Carbonate chemistry with R Mikuana NextWordR Capstone project for Johns Hopkins University Data Science Specialization Mikuana bowtie Convenience wrapper functions package for R Mikuana vitalstatistics An R package for the analysis of CDC Vital Statistics birth records MilesMcBain BRAGTalkDec2016 MilesMcBain datapasta On top of spaghetti, all covered in cheese.... MilesMcBain deplearning Detect, install and update R source dependencies. MilesMcBain gistfo Turn your RStudio untitled tabs into gists. You monsters. MilesMcBain haircut Give your strings a haircut with tidyverse-friendly regex. MilesMcBain hudmunge Heads up data munging. MilesMcBain importsTest imports in R packages not quite playing right with devtools::install_github()? MilesMcBain markdrive Edit Google docs in Markdown with a little help from #rstats MilesMcBain mmmisc My Library of R Helpers MilesMcBain mufflr Experimental RStudio addins for pipe and assign. MilesMcBain packup Collect, stow, and alphabetise library() calls in your R files. MilesMcBain pushr Push type operation to help with efficient sequential production of data frames in R. MilesMcBain shist Shifting histograms - they're the shist MilesOtt strategicplayers strategicplayers R Package MinHyung-Kang KSD MinJinHa PRECISE Personalized Cancer-specific Integrated Network Estimation MingChen0919 gtgr MingChen0919 mcfirstr MingweiWilliamTang BMIthreshCount R package for counting label transition in Brownian motion threshold model MingweiWilliamTang LNAphyloDyn Package of the research: Bayesian inference on coalescent-based phylodynamics Minsu-Daniel-Kim airbnb_data_analysis Minsu-Daniel-Kim airbnb_new_booking_classification Minsu-Daniel-Kim carpool_api Minsu-Daniel-Kim carpool_server Minsu-Daniel-Kim lab3 Minsu-Daniel-Kim tipinboard MinuteswithMetrics Earthquakes Functions for NOAA Earthquakes MinuteswithMetrics rEQ Minzhe DIGREsyn Drug Induced Genomic Residual Effect (DIGRE) model MirceaDavidEsc Collective Functions that allow for calculation of order parameters in collective moving systems MirceaDavidEsc bigh5 An R package to allow users to access and operate on HDF5 data that are too big to store in memory. MirceaDavidEsc scalefree Correlation and fluctuation analysis in collective systems MiriamJaser elliptest elliptest MirkoTh BayesRS Mirthelle maRge maRge is a package developed for simplifying motif analysis of genomic regions. MirzaCengic Rahat My personal package with useful functions MirzaCengic crete.gap Package to facilitate Crete gap analysis project MirzaCengic gdalR Collection of functions that call GDAL externally on the milkun cluster. Mithradatha MTH2401 Collection of useful functions for Probability/Statistics, built in the R programming language Mkossmeier metaviz Rainforest Plots for Meta-Analysis MoBiodiv MoBspatial Spatial analysis of scale-dependent biodiversity changes MoBiodiv mobr code for constructing and examining diversity curves MoBiodiv mobsim Spatial analysis of scale-dependent biodiversity changes MoRudyKim farsfunc Cousera_RDev_FARS_Package Moberst mko.tools Random assortment of custom R functions MobilePhoneESSnetBigData pestim Population estimation using mobile phone data Model-R modelr_pkg MohoWu utilr Utility and plotting functions I tailored to my use. MoisesExpositoAlonso moiR Useful R functions for an easier life and analyses MoisesExpositoAlonso popgensim Simulator of one biallelic loci under mutation, selection, migration and drift, in a diploid population MoisesExpositoAlonso rbioclim Molmed emil Developer-friendly predictive modeling framework Molmed projmanr A R package that can be used to access the ProjMan database Momus fars Assignment for R Packages online class. MonashBioinformaticsPlatform varistran R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data MonkeyLB TDR Tail dependence as reproducibility measure MonkeyLB gIDR Generalized irreproducbile discover rate MonkeyLB hicrep R package to evaluate the reproducibility of Hi-C data MonkeyLB mTDR R package to comprehensively evaluate the reproducibility of chromatin profiling sequencing data Monneret bandsolve Monneret laplacemc3 Moonglum8 farsfuncs Fars functions for Coursera Building Projects in R course assignment Moonglum8 rEarthquake MoritzSt sNoSeR MorphoFun kraken Biomechanics that can twist and crack bones MorphoFun psa MoseleyBioinformaticsLab visualizationQualityControl visual methods for omics data set quality control MoseleyBioinformaticsLab waitcopy R package to allow copying within specific time and with intervals between copies MotusWTS motusdata Mouse-Imaging-Centre RMINC Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Jim Nikelski and Matthijs van Eede. Some additional information can be found here: Mouse-Imaging-Centre cerebrovascular_analysis Mouse-Imaging-Centre mincModelExplorer Moustapha-A Retl Moustapha-A autopolate MrDAndersen dRiveOne No description or website provided. MrDAndersen ff.datascrape MrDAndersen firebaseAPI MrDAndersen stRipe R Wrapper for Stripe MrFlick myphone An R package to access data from iPhone backup files (on a Mac) MrFlick ocsls Survey results from the Online College Social Life Survey (OCSLS) Mthrun ABCanalysis Computed ABC Analysis Mthrun AdaptGauss Gaussian Mixture Models (GMM) Mthrun Classifiers Common Supervised Maschine Learning algorithms Mthrun Distances Functions For Different Distance Measures Mthrun FCPS Fundamental Clustering Problems Suite Mthrun GeneralizedUmatrix Mthrun ProjectionBasedClustering A clustering approach for every projection method based on the generalized U*-matrix visualization of a topographic map Mthrun TimeSeries TimeSeries analysis Tools is able to describe event-pattern detection as a part of Complex event processing (CEP) for categorial time series and gives several approaches for numerical times series, like Filtering through FFT, WVT. Muladhara samizdata No description or website provided. Mullefa inflate inflate a data frame over a date column Mullefa locallib virtualenv for R MullinsLab scriptName Determine an R script's filename from within the script itself MultinomialMutations MultinomialMutations R package for multinomial regression on large cancer DNA datasets. Written for the data analysis in Bertl, J.; Guo, Q. et al. bioRxiv, 2017. doi: https://doi.org/10.1101/122879. MySportsFeeds mysportsfeeds-r R wrapper functions for the MySportsFeeds Sports Data API MyersGroup MotifFinder An R package for de novo discovery of enriched DNA motifs (e.g. TFBS) Myfanwy DWRpackage A package to query cdec.water.ca.gov Myfanwy MattLiebeR A package to tweet nice messages to people Myfanwy fishtrackr A collection of functions for summarizing acoustic telemetry datasets. Myfanwy sizer Exports R Plots to Pre-defined Sizes and File Types MyriamEstefania fars Mystilivia P2M2Apps Mystilivia SDjoygret thesis packaging with R functions used. NCAR LatticeKrig LatticeKrig contributed R package NCAR example-repository NCAR fields NCAR lrose-emerald NCAR lrose-titan NCAR notifications NCAR nwmtools Tools for specific workflows pertaining to National Water Model output NCAR switchmap NCBI-Hackathons SRA2R SRA2R, a package to import SRA data directly into R NCBI-Hackathons SuMu A package for analyzing genetic data for association with phenotypes NCEAS PKIplus Extensions to the Public Key Infrastructure (PKI) package for R NCEAS arcticdatautils Utility functions in R for processing data for the Arctic Data Center NCEAS datamgmt Data management utilities for curating, documenting, and publishing data. NCEAS metadig-r MetaDIG client package for R NCEAS recordr Provenance tracking for R. NCEAS submissionsbot NCRN NCRNWater R Package for analyzing NCRN-NPS water data NCRN NCRNbirds NCRN NPSForVeg NPS forest vegetation analysis in R NCRN npscv R package for access to NPS cv data NCSABrownDog bd.r ND91 ndlib R package containing handy functions that are mostly geared at methylation analysis NDOW-ARG rNDOW an R package for NDOW NERC-CEH teda-r Typicality and Eccentricity Data Analysis R package NESCent MINOTAUR Multivariate vIsualisatioN and OuTlier Analysis Using R NESREA SMExplorer A tool for the exploratory analysis of social media metrics. NErler JointAI Joint Analysis and Imputation of generalized linear models and linear mixed models with missing values NGSwenson lefse lefse 0.1 NGSwenson lefse_0.5 lefse R package version 0.5 NIHBiSB CoSync-Test R package for Co-Synchronization network analysis of pseudo-temporally ordered single cell data NINAnor INVAFISH-sim NKI-CCB TANDEM A two-stage regression method that can be used when various input data types are correlated, for example gene expression and methylation in drug response prediction. In the first stage it uses the upstream features (such as methylation) to predict the response variable (such as drug response), and in the second stage it uses the downstream features (such as gene expression) to predict the residuals of the first stage. In our manuscript (Aben et al., 2016), we show that using TANDEM prevents the model from being dominated by gene expression and that the features selected by TANDEM are more interpretable. NKI-CCB dids R package for the Detection of Imbalanced Differential Signal (DIDS) algorithm. NKI-CCB ggsea Flexible gene set enrichment analysis NKweiwang flash just a test NLSume indexScoring NLeSC EEG-epilepsy-diagnosis Detection of Epilepsy from EEG data (14 channel x 5 minutes) NMML agTrend R package for Bayesian inference of abundance trends NMML crawl R package for modeling animal movement with continuous-time correlated random walk models NNLu preprots R Package for preprocessing time series NOllAl diaggnosticplots Plots for Evaluating Machine Learning models in the ggplot workd NPhogat RTqPCR RTqPCR: An R package for the normalisation and pre-processing of raw fluorescent data NREL eere-sep-projects-map NREL kaleidoscope NREL myRepo NREL repra NREL rplexos NREL ssc_api NREL streamm-opv-project NREL streamm-tools-tests NSAPH testcheck NTNU-VM natronbatchupload NTU-Data-Science-2015-Fall R_Homework_test NVE FlomKart Flood frequency analysis (R code) for the FlomKart project NVE FlomKart_ShinyApp A web app (R Shiny) for the FlomKart project NVE Flood_forecasting An R Shiny app to present flood forecasting results at NVE NVE NVEDATA R package for processing data at NVE, currently meteorological (SeNorge) and runoff data. NVE NVEHYDROTOOLS Set of R functions for hydrological analysis at NVE NVE fitdistrib R package for fitting probability distributions to flood data at NVE NWCEd NWCEd A Repository for Educational Materials Based on the National Water Census Data Resources Portal NYTimes gun-sales Statistical analysis of monthly background checks of gun purchases NYTimes gunsales Statistical analysis of monthly background checks of gun purchases NZRLIC RLPlots Rock lobster stock assessment plotting package Najah-lshanableh R-data-mining Najah-lshanableh R-data-mining2 NajlaAlariefy DataProductsCoursera NajlaAlariefy SpectralPatterns An R package for pattern detection of spectra produced by FTIR. NamyounKim NLP4kec This package provide the Korean and English, Chinese morphological analyzer on R. NanoCAN Rmiracle R package for analysis of reverse phase protein array data in conjunction with MIRACLE. Naoto-Imamachi BridgeR An R library for comprehensive BRIC-seq data analysis NateByers ETL NateByers ISDr R package for downloading integrated surface data from the National Climatic Data Center. NateByers IUHhelpers NateByers NPSdrivers NateByers NateByers NateByers NatureConservancyFishPrediction NateByers Reconcile Reconcile study data and biorepository data NateByers budget NateByers cRiteria NateByers etljobs R package for ETL jobs NateByers filterModule NateByers jekyll NateByers pm.helpers NateByers region5air Air quality data from EPA Region 5 NateByers transformR R package with functions for transforming data for database migration. NateMietk MODISr NathanDeMaria glicko Glicko ratings in R NathanEpstein finData R library for easily scraping financial time series data NathanSkene EWCE Expression Weighted Celltype Enrichment NathanSkene One2One This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml NathanSkene PatchseqMap Map data from patchseq onto cell types NathanWycoff mds.methods Some methods for Multi-Dimensional Scaling NattyE nlstimedist Non-linear model fitting of time distribution of biological phenomena NetDem-USC netdemR R tools for analysis of Twitter data NetGary0430 DataProdProj No description or website provided. NeuroStat NeuRRoStat NeuRRoStat is an R package containing analyses/subroutines performed at the NeuroStat lab NeuroStat neuRosim An R package to simulate fMRI Data Including Activated Data, Noise Data and Resting State Data NexusX NVT NVT - a R library for the evaluation of RNA-Seq normalization methods Nezafati snowboot Ngendahimana epbi500 epbi500 Ngendahimana sensitivityR5 sensitvityR5 NicGian prova NicholasClark test No description or website provided. NickOtis Sroot NickOtis adoTest NickPTaylor UKEnergyMix A tool for exploratory data analysis of the UK energy mix NickPTaylor inpectr NickPTaylor pfatools Collection of tools and shiny apps for cleaning of plant feedback data. NickPTaylor simple NickPTaylor templater Transfer Data from an Spreadsheet to Template Report Document NickPTaylor testPackages NickSEC SECAddresses Package to readin EDGAR address files, anayze them, and map them NickSc79 Fars2 NickTheFox Coursera Nicktz Dplyr2Xts Nicktz Texevier Nicktz rmsfuns This package contains miscellaneous R helper and wrapper functions Nicktz tbl2xts NicoB-UOL TopicFunder TopicFunder Nicolabo PERUanalytics No description or website provided. Nicolabo PERUapp No description or website provided. Nicolabo Seriale Nicolabo hist_app No description or website provided. NicolasEDubois TtestBootstrap NicolasEDubois anaval Validation of analitical methods NicolasEDubois virulence NicolasJBM concapp Application to concatenate files NicolasJBM constRuct Functions and interfaces to build different kinds of constructs. NicolasJBM construct Functions and interfaces to build different kinds of constructs. NicolasJBM datexp Interface to facilitate data exploration. NicolasJBM formatR Functions to edit and format numbers and tables for documents. NicolasJBM gapp Functions and interfaces for the analysis of managerial situations. NicolasJBM genexam Interface to select questions from other packages and generate exams. NicolasJBM grpcomp Functions to analyze group composition NicolasJBM lexana Functions and interfaces to conduct lexical analyses. NicolasJBM manacc Functions to generate exercises in management accounting. NicolasJBM mapnet Functions to conduct meta-analyses and represent nomological networks. NicolasJBM model NicolasJBM modelest Functions and interfaces to build, estimate, and report complex models. NicolasJBM modmed Functions for moderated mediation analyses NicolasJBM tripapp Application to collect TA data NicolasMorenoAndrade Eccolepack Package designed to develop EccoleR, an R GUI to navigate Eccole's data base. NikNakk firsttable tableone package for R NikNakk forestmodel NikNakk s3issuedemo Demo of issue with s3 and packages NikNakk sample-s3-issue NikNakk snpStats NikNakk tableone tableone package for R Nilesh1978 fedtrafat Nisus-Liu CompositeIndex CompositeIndex: return composite economic index Nisus-Liu GRA Grey Relational Analysis(GRA), first function: grey relational degree, which is similar to orrelation coefficient, if you want to evaluate some unit, please transpose data frame before using this function. second funtion: grey clustering, like hierarchical clustering, see hclust. Nisus-Liu bbturns This program's goal is to get Composite Index(CI)/Difussion Index(DI) about certain economic indicators. Therefore we can possibly predict economy trend in advance. Nisus-Liu vava Some frequency-used functions for me, package them taking convenience for me and for you. NoahZinsmeister Rbnb Experimental R front-end for the Airbnb API Non-Contradiction JuliaCall Seamless Integration Between R and Julia Non-Contradiction JuliaInR Non-Contradiction TestWithRStudio Check your R code in RStudio in Continuous Integration Non-Contradiction convexjlr Disciplined Convex Programming in R using Convex.jl. Non-Contradiction ipoptjlr Non-Contradiction test_JuliaCall-libjulia NonWhite rprestowrapper Package for making queries on Presto server Noobivsho ssClust Semi-supervised Model Based Clustering a la Mclust NorskRegnesentral NRTools Tools used by Alex Lenkoski at the Norwegian Computing Center to develop R packages NorskRegnesentral SCA_mentella NorskRegnesentral SpatGEVBMA R-package fitting a Bayesian hierarchical spatial model for the generalized extreme value distribution with the option of model averaging over the space of covariates Northbreeze circle NorthernLightsDataLab tidyCFL A tidy data package for the Canadian Football League API Nowosad filmcolors Nowosad geoplus Nowosad geostatbook Pakiet zawierający dane do skryptu "Geostatystyka w R" Nowosad meteorogram only for testing purposes Nowosad p216 Nowosad pollen Tools for working with aerobiological data Nowosad popgrids Global dataset of gridded population and GDP (1980-2010 estimations and 2020-2100 scenarios) Nowosad rgeopat2 Supports analysis of spatial data processed with the 'geoPAT' 2.0 software Nowosad sondowania Nowosad spData Datasets for spatial analysis Nowosad spDataLarge Nowosad wolnedni Pakiet pozwalający na określenie dni wolnych od pracy w Polsce Nuapril task_09 NumbersInternational flipAPI R package for retrieving data from web APIs NumbersInternational flipAnalysisOfVariance Functions for computing ANOVA, MANOVA, and related methods NumbersInternational flipChartBasics Basic functions to be used by other charting packages (i.e., flipPlots, flipStandardCharts, flipPictographs) NumbersInternational flipCluster NumbersInternational flipData Data examples for flip projects NumbersInternational flipDimensionReduction NumbersInternational flipDummyForTesting A dummy package for testing package loading and dependency quirks. NumbersInternational flipExampleData Example data files used in the flip project NumbersInternational flipFormat NumbersInternational flipGeneric NumbersInternational flipGenerics NumbersInternational flipGeographicCoordinates Geographic coordinates used in plotting functions (i.e., maps) NumbersInternational flipImputation NumbersInternational flipMaps Geographic maps NumbersInternational flipMultivariates NumbersInternational flipPictographs NumbersInternational flipPlots NumbersInternational flipRegression NumbersInternational flipStandardCharts HTMLwidget Charts with an Excel-like signature NumbersInternational flipStartup Algorithms for analyzing the business peformance of a startup NumbersInternational flipStatistics NumbersInternational flipTables R package for handling tables and related objects NumbersInternational flipTextAnalysis flipTextAnalysis NumbersInternational flipTime Tools for manipulating and presenting time series data NumbersInternational flipTransformations NumbersInternational flipTrees NumbersInternational flipU Flip Utilities NumbersInternational flipVariableSet NumbersInternational qrserver R package to be installed on all our R servers. NumbersInternational rhtmlHeatmap rhtmlHeatmap - An improved heatmap package from d3heatmap NumbersInternational rhtmlSankeyTree R htmlwidget package for creating a sankey tree plot NumbersInternational rhtmlStatefulWidget A trivial htmlwidget that is able to store and restore its state Nuniemsis Siane Useful R package to load and represent maps of the IGN(National Institute of Geography). It also provides intuitive functions that can easily plot statistical data over the map's territories using colour scales. Nuniemsis inviernopack Nwosu 0.9-RM.weights Nwosu CRAN_2017 Nwosu CRAN_RM.weights Nwosu JAN_17_RM_weights Nwosu RM.weights Nwosu Version-0.9 Nwosu beans Nwosu new_RM_weights new Nygdat norquant Norquant OHDSI Achilles Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database OHDSI Aphrodite [in development] OHDSI BigKnn An R package implementing a large scale k-nearest neighbor classifier using the Lucene search engine OHDSI BoostCompiledLibraries R package for several BOOST compiled libraries OHDSI BrokenAdaptiveRidge OHDSI CaseControl An R package for performing (nested) matched case-control analyses in an observational database in the OMOP Common Data Model. OHDSI CaseCrossover An R package for performing case-crossover and case-time-control analyses in an observational database in the OMOP Common Data Model. OHDSI CdmAtlasCutover An R package to assist in the management of multiple CDM data sources for use in Atlas OHDSI Centaur An R package for performing new-user cohort studies. This package implements a more traditional approach than the one used in the CohortMethod package. OHDSI Cert [Under development] R package for running the Comparison on Extreme Laboratory Test results (CERT) algorithm. OHDSI Clear [Under development] R package for running the Comparison of the Laboratory Extreme Abnormality Ratio (CLEAR) algorithm. OHDSI CohortMethod An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model. OHDSI Cyclops Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions. OHDSI DDLgeneratr OHDSI DatabaseConnector An R package for connecting to databases using JDBC. OHDSI ETL-HealthVerityBuilder ETL to take dataset from HealthVerity and convert to OMOP CDM v5 [in development, not for production use yet] OHDSI EmpiricalCalibration An R package for performing empirical calibration of observational study estimates OHDSI EvidenceSynthesis [Under development] An R package for combining evidence from multiple sources (e.g. multiple data sites) OHDSI FeatureExtraction An R package for generating features (covariates) for a cohort using data in the Common Data Model. OHDSI FuzzyForest [Under development] Random classification and regression trees OHDSI Gaia OHDSI Hercules OHDSI IcTemporalPatternDiscovery An R package for performing the IC Temporal Pattern Discovery method. OHDSI Iris IRIS provides a high-level descriptive summary of a population within a OMOP CDM-compliant database OHDSI LocalControl An R Package for Generating High Quality Comparative Effectiveness Evidence OHDSI MethodEvaluation An R package for the evaluation of estimation methods OHDSI OhdsiRTools An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries. OHDSI OhdsiServiceWrapper The OHDSI Service Wrapper is an R package that provides a layer between the OHDSI WebAPI and the R methods library. This package contains analysis specific features that leverage the methods library in order to generate evidence from OHDSI assets defined within the architecture. OHDSI OhdsiSharing [Under development] Package for sharing of the results of the OHDSI tools OHDSI OhdsiStudy2 Treatment Pathways Study Protocol 12 Months OHDSI Pace OHDSI PatientLevelPrediction An R package for performing patient level prediction. OHDSI PropensityScoreEvaluation OHDSI PublicOracle R Interface to the OHDSI Public Web API [in development] OHDSI RcppBoostCompute Rcpp wrapper for boost::compute, an STL algorithm-based OpenCL library OHDSI RcppBoostSimd OHDSI RcppVexCL R wrapper for VexCL, an expressive C++11 header-library for OpenCL computing OHDSI San OHDSI SelfControlledCaseSeries An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model. OHDSI SelfControlledCohort An R package for performing self-controlled cohort analyses, a method to estimate risk by comparing time exposed with time unexposed among the exposed cohort. OHDSI SqlRender This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects. OHDSI bit Fork of the R bit package OHDSI ff Fork of the R ff package OHI-Science ohicore Ocean Health Index - R library of core functions OHI-Science ohirepos Create OHI tailored repositories OJWatson dhs.mung Data munging functions for handling DHS data OJWatson evoflution Forward in time epidemic and genetic simulator with a focus on flu OJWatson hrp2_malaria hrp2 related malaria model and results OJWatson hrp2malaRia pfhrp2 deletion malaria modelling OJWatson malaRia No description or website provided. OJWatson paper R toolkit for assisting with Imperial College "paper outbreak" practical OJWatson scraper Website Scraping with R OJWatson sims4 Epidemic case tree simulator and integrated phylogenetic analysis OJWatson waities bbcfood website scraping OLICHIPPERFIELD rednshift Package for fast easy querying of very big datasets (~ 10 million rows) from redshift OOmegaPPanDDa Rwordseg This is a copy from R-forge OOmegaPPanDDa tmcn This is a copy from R-forge OUKUN0705 black76IV R package computing and ploting implied volatility for option on future based on Black76 model OUKUN0705 timeseriesmom Screen and implement time series momentum stratege OVCARE nanostringr OVVO-Financial NNS Nonlinear Nonparametric Statistics Using Partial Moments OaCantona Test OaCantona garfiled Read and handle Garmin .tcx files OakleyJ MUCM Gaussian process emulator methods based on the MUCM toolkit OakleyJ SHELF Tools to Support the Sheffield Elicitation Framework (SHELF) Oefenweb r-database Establish a database SQL connection between databases and R Oefenweb r-item-json-parser Removes JSON format from Oefenweb item dataset Oefenweb r-tools Oefenweb related tools OlavNikolaiBreivik IBTS-Rpackage OldLipe TrajDataMining Trajectories Data Mining OleksF mytestpackage_R A test R package. Ollie-gnodde moviefinder Finds your movies OmarGonD googleAnalyticsReports OmaymaS textpredict Omni-Analytics-Group Rnumerai R Interface to the Numerai Machine Learning Tournament API Omni-Analytics-Group RnumeraiAPI R Interface to the Numerai Machine Learning Tournament API OnAnalytics OnBusiness Data package for business analytics Oncostat biospear Biomarker selection in penalized regression models OnroerendErfgoed onroerenderfgoedtheme ggplot2 theme OnroerendErfgoed roeps R client for Flanders Heritage Inventory Open-EO openeo-r-backend A reference implementation for the openEO core API as a proof-of-concept Open-EO openeo-r-client R client package for working with openEO backends OpenBioMaps obm.r R package using OBM api. Get data, forms list ... OpenGenderTracking globalnamedata Tools to download and process name data from various sources. OpenMx OpenMx Team repository for the OpenMx project: OpenSDP OpenSDPsynthR Codebase to generate simulated data for OpenSDP project OpenSourceOrg r-opensource Opportunity-Estimator-EpiSurveillance leos.opportunity.estimator Notification Opportunity Estimator OscarBrock gCrisprTools An R/Bioconductor package for the integrated analysis of pooled high-throughput CRISPR/Cas9 or shRNA screening experiments. Osean-4 CAXA Conspecific Attraction Experiment Analysis (CAXA) Osean-4 Final.Project Final project for CPSC 499 course Oshlack AllSorts An Acute Lymphoblasitc Leukemia B-Cell classifier Oshlack Baller An Acute Lymphoblasitc Leukemia B-Cell classifier Oshlack splatter Simple simulation of single-cell RNA sequencing data OskarHansson pcrsim An R package for simulation of the forensic DNA process OskarHansson strvalidator Initial push Osmahmoud essexBigdata Essex big data summer school, September 2016 (clustering and classification) Ossifragus IBOSS An R package to implement the Information-Based Optimal Subdata Selection method Ossifragus OSMAC Ossifragus test OthoMantegazza crossr Ottawa-EPRI EPmisc Ottawa-EPRI REPort Ottawa-EPRI regtab OuhscBbmc AdhdRS4Calculator Calculator for ADHD Rating Scale IV OuhscBbmc OuhscMunge Data manipulation operations OuhscBbmc Premiss A "Predictive Risk Model for Intensive Safety Services Selection" OuhscBbmc REDCapR R utilities for interacting with a REDCap data system (http://www.project-redcap.org/) OuhscBbmc Wats Code to accompany WATS Plot article OuhscBbmc referral-exposure Calculating exposure over multiple CPS referrals OuhscBbmc usnavy-billets Optimally assigning naval officers to billets OutbreakResources R0 OutbreakResources incidence ☣📈📉☣ Compute incidence OvarianCancerCell masonmd R package to predict mutations whether can elicit nonsense-mediated decay or not OwenSims networkR An R package for analysing social and economic networks. OwnYourData oydapp OxfordIHTM infohub Oxford University MSc International Health and Tropical Medicine Oyserman ctr Congruent Transcrtiptional Response Ozan147 nbaStats R package to facilitate data scraping in NBA analytics OzzieBelazi advRProject PABalland EconGeo First R package to propose user-friendly functions to compute a series of indices commonly used in Economic Geography. PACCAR DataScience_PkgPattern A sample R package in support of the Enterprise Architecture pattern on developing R packages. PAPL-SKKU ggplot2.SparkR No description or website provided. PDXChris pmMaps Tools for mapping PAWMAP data PDXChris pmtools An R package with a set of functions for working with PAWMAP data PF2-pasteur-fr SARTools Statistical Analysis of RNA-Seq Tools PGWG analysis PGWG groundwateR PHP2560-Statistical-Programming-R jackknife-r-package-MollyMcCarthy jackknife-r-package-MollyMcCarthy created by GitHub Classroom PHP2560-Statistical-Programming-R jackknife-r-package-tinoreskovic jackknife-r-package-tinoreskovic created by GitHub Classroom PHP2560-Statistical-Programming-R jackknife-r-package-vicchen1991 jackknife-r-package-vicchen1991 created by GitHub Classroom PHP2560-Statistical-Programming-R jackknife-r-package-zhangpa jackknife-r-package-zhangpa created by GitHub Classroom PHP2560-Statistical-Programming-R jackknife-r-package-zsi1 jackknife-r-package-zsi1 created by GitHub Classroom PHP2560-Statistical-Programming-R r-framingham r-framingham is a package used to estimate the 10-year cardiovascular risk of an individual using Framingham_Risk_Score standard guidelines PHP2560-Statistical-Programming-R r-package-beautiful-day r-package-beautiful-day created by GitHub Classroom PHP2560-Statistical-Programming-R r-package-the-best-team r-package-the-best-team created by GitHub Classroom PHSKC-APDE Housing Processing and analyzing housing authority data PJOssenbruggen CF Stochastic Car-Following PLJV BrotherOrange PLJV Ogallala Fetches, processes, and models groundwater levels for the High Plains (Ogallala) region of the US using data from the USGS High Plains Water Level Monitoring Study (see: https://ne.water.usgs.gov/ogw/hpwlms/). PLJV OpenIMBCR Various work with Integrated Monitoring in Bird Conservation Regions (IMBCR) data and analyses PLJV landsatWorkbench A painless 'R' package for downloading, aggregating, and processing Landsat imagery. PLStenger ReadFastQC Catch Useful Informations Into FastQC Html Files Created by Galaxy. PLStenger ReadFlagStat Read easily all yours FlagStat files into one CSV file PLStenger ReadGTF Give some plots of your GTF file from Galaxy PMBio Rslalom slalom - an R package implementing a factorial single cell latent variable model PMBio slalom slalom - an R package implementing a factorial single cell latent variable model PMassicotte cdom The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organic matter (CDOM). PMassicotte eemR Utilities for pre-processing emission-excitation-matrix (EEM). PMassicotte gtrendsR R functions to perform and display Google Trends queries PMassicotte isin PMassicotte makroalgaeindicators PMassicotte parafac R implementation of PARAFAC analysis PNNL-Comp-Mass-Spec glmnetGLR The primary goal was to build a classifier that accurately predicts a binary response. We utilized a Lasso logistic regression classifier (LLRC) which simultaneously restricts the size of model coefficients and the number of quality metrics included the model. Importantly the model does not treat false-negatives and false-positives as equally deleterious events. PNorvaisas PFun Collection of useful functions PPgp MortCast R package for estimating and forcasting mortality rates PPgp bayesDem R package providing a GUI for bayesTFR, bayesLife and bayesPop PPgp bayesLife R package for predictions of life expectancy PPgp bayesPop bayesPop R package PPgp bayesTFR R package for probabilistic projections of total fertility rate PPgp wpp2015plusMig R package for modified WPP2015 data derived using probabilistic migration PPgp wppExplorer wppExplorer R package PPgp wppExplorerBayesMig Similar package to wppExplorer, but uses data from wpp2015plusMig PPgp wppPlusMigExplorer Similar package to wppExplorer, but uses data from wpp2015plusMig PROBIC GPrank GPrank - R package PROBIC tigreBrowserWriter R package for writing tigrebrowser databases PROBIC tigrebrowser-writer R package for writing tigrebrowser databases PROBIC tigrebrowserWriter R package for writing tigrebrowser databases PROMiDAT RSDA Symbolic data analysis in r PSMD-Psychometrics -old-psychometricsPSMD-old- Psychometrics PSMD Package (Repository for Git-Syncing) PSMD-Psychometrics PSMD.Psychometrics PSMD-Psychometrics TestMR Test repository created by MR PSMD-Psychometrics TestRepoLGT PSMD-Psychometrics psychometricsPSMD Psychometrics PSMD Package (Repository for Git-Syncing) PVMatsiras myfirstpackage PablitoCho rSQM r package doing Simple Quantile Mapping downscaling technique. PabloCapilla incR R package for the analysis of animal incubation PabloMBooster CAMPtools PabloMBooster SISESATools PabloMBooster fenix o PacificBiosciences R-pbh5 A library for accessing data in HDF5 files produced by Pacific Biosciences sequencing machines PacificBiosciences R-pbutils An R package with various plotting and analysis utilities PacificBiosciences ccsviewr R-based CCS output viewer PacificBiosciences pbbamr An R package to view PacBio BAM files PacificBiosciences pbcommandR R interface for pbsmrtpipe workflow engine PacificBiosciences pbcommandr R Package for generating reports using SMRT-Link PacificBiosciences smrtlinkr R package to interface with SMRTLink REST API PacificCommunity ofp-sam-flr4mfcl R4MFCL built with FLR classes Pakillo CVtools Tools related to CV preparation and analysis in R/Rmarkdown Pakillo Carex.bipolar Research compendium for "Niche shifts after long-distance dispersal events in bipolar sedges (Carex, Cyperaceae)" Pakillo RmdTools Tools and functions to work with Rmarkdown Pakillo dendroBayes Fitting Bayesian state-space models of tree growth in R Pakillo grateful Facilitate citation of R packages Pakillo pacotools Miscellaneous tools I often need and forget about Pakillo rSDM Species Distribution Modelling in R Pakillo rgis Functions to perform GIS operations in R Pakillo rmdTemplates R package containing a collection of Rmarkdown templates Pakillo template A template for research projects structured as R packages Pakillo thermophilization Analysis of changes in biotic community structure in relation to climate change. Pakillo vegetools Tools for vegetation analysis PalEON-Project stepps-cal A repository for the STEPPS calibration package. PaolaCognigni CTraxHelper R package for importing and handling CTrax data PapenfussLab StructuralVariantAnnotation R package designed to simplify structural variant analysis Paradigm4 SciDBR R package for SciDB Paradigm4 s4vdp4 Modification of the s4vd biclustering package to support SciDB arrays and improve performance Paradigm4 scidb.dplyr A SciDB backend for dplyr Paradigm4 scidb4gh GA4GH inspired and SciDB backed R API for genomic data ParhamLab PeptidePCA ParkerICI premessa R package for pre-processing of mass cytometry data PascalKieslich mousetrap Process and Analyze Mouse-Tracking Data PascalKieslich readbulk Read and Combine Multiple Data Files Patrick01 Patricks This is not not even my first package Patrick01 Toolbox Patrick01 pmisc PatrickChodowski NBAr First commit PatrickDuffy34 rsoomo PatrickRobotham ggicons Ggplot with custom icons! Patriota tsinteger Documentação do pacote tsinteger Paul-James pjames Simple R helper functions I've accumulated to be used for testing. PaulPyl JagsCluster Clustering SNVs using empirical Bayesian clusterings with the rjags back-end. PaulPyl h5array HDF5 back-end for array and matrix datastructures in R PaulRegular SimSurvey A Package for the Simulation Testing of the Design and Analysis of Fisheries-independent Trawl Surveys (In Development) PaulRegular surveyTestr A Package for the Simulation Testing of the Design and Analysis of Fisheries-independent Trawl Surveys (In Development) Paula-Moraga SpatialEpiApp SpatialEpiApp PaulineNimo mscidata Two Data Sets Paulms RegUtils Regresiones PavanKB TestProject PavlidisLab ermineR (WIP) R wrapper for ermineJ PavlidisLab gemmaAPI.R An R wrapper for Gemma's restful API. PavlidisLab neuroExpressoAnalysis Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2017 PawKed SuperFarmerPKEK PawelKra wskCI R package for caclulating tree competition indexes on testing sites. PawelMG gis_server PeFox DySeq PedroMiguelFMoreira DBAbstractR R package used for DB abstraction. Pedromoisescamacho intrinio.tcg R package to retrieve financial data from Intrinio API PeeperLab CopywriteR DNA copy number detection from off-target sequence data PeeperLab Rtoolbox Toolbox with R scripts PeeperLab XenofilteR Filtering of PDX samples for mouse derived reads PengNi dSimer PengyiYang ClueR Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data PengyiYang Re-Fraction PennDemo PennAppDemo PennStateDEPENdLab fitclock R package for fitting clock task data. PennStateStatGen iForm Repository for the R package for the iForm procedure PepperLi superplot An R-package that implement a mixture of multiple graphics on unevenly gridded canvas PerkinElmer informr Helper functions for working with inForm data. PerkinElmer phenoptr Helper functions for working with inForm data. PerkinElmer phenoptrExamples Example data for use with the phenoptr package PersonalizedOncology ClinicalReportR PeteHaitch Aclust This repository is merely a copy of the `Aclust` R package developed by Tamar Sofer. This version of `Aclust` was downloaded on 30 April, 2014 from [http://www.hsph.harvard.edu/tamar-sofer/packages/](http://www.hsph.harvard.edu/tamar-sofer/packages/). PeteHaitch BioCpkgA PeteHaitch CRANpkgA PeteHaitch CRANpkgB PeteHaitch DRMatrix Compressed Storage of Numeric Matrices With Many Duplicate Rows PeteHaitch DSArray Compressed In-Memory Representation of 3-Dimensional Arrays That Contain Many Duplicate Slices PeteHaitch DelayedMatrixStats A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package PeteHaitch GenomicTuples Representation and Manipulation of Genomic Tuples in R PeteHaitch MethylationTuples An R package for analysing, managing and visualising methylation patterns at genomic tuples. PeteHaitch RUVcorr PeteHaitch SparseSummarizedExperiment An experimental R package that defines S4 classes and methods for sparse genomic data PeteHaitch cometh An R package with tools for analysing, managing and visualising co-methylation data. Loosely speaking, co-methylation is the correlation structure of DNA methylation. PeteHaitch fstArray Leveraging 'fst' for fast on-disk matrices PeteHaitch methsim An R package to simulate DNA methylation data. PeteHaitch repete Miscellaneous R functions that I find useful. PeteHaitch rope String manipulation in Rcpp PeteLaud ratesci Confidence intervals for comparison of rates PetoLau RunsuperEnsemble R packege for Unsuprvised Ensemble Learning for Electricity Load Forecasting PetoLau TSrepr TSrepr: R package for time series representations PhDMeiwp basicTrendline an R package for adding trendline of basic linear or nonlinear regression models and show equation to plot. PhDMeiwp fitting R package of "fitting" performs plot and fitting regression line, and showing equation parameters in one step directly PhDMeiwp plotwithline R package of "plotwithline" performs plot with both regression line and equation parameter in one step directly Phantasy13 Text-Mining Text Mining and sentiment analysis PheWAS PheWAS The PheWAS R package Phil1337 predictMarkov R project using Google Analytics data and machine learning (markov chain, k-means clustering) to predict users next/last target page PhilBoileau neatmaps Heatmaps for Multiple Network Data PhilBrockman Tool-for-new-hires-rails- PhilBrockman WilliamsStaff HHC PhilChodrow compositional-complexity PhilChodrow compx PhilipPallmann ANOM R code creating analysis-of-mean decision charts. PhilipPallmann BayesMAMS Designing Bayesian multi-arm multi-stage studies. PhilipPallmann SimLongi Convenience R code for multiple inference in longitudinal settings. Also example datasets. Still more to come. PhilipPallmann jocre Joint confidence regions PhilipPallmann modest Model-based dose escalation tools PhilipPallmann simbe Simultaneous assessment of bioequivalence on multiple pharmacokinetic parameters (e.g., AUC and Cmax). PhilipPallmann toxbox Jittered boxplots of (toxicological) data with sub-structures e.g., technical replicates, clustering, subsampling, ... PhilippPro OOBCurve Random Forest OOB Curves for any performance measure of mlr PhilippPro quantregRanger Quantile Regression for Ranger PhilippPro surrogate Create surrogate models with the results of the OpenML bot PhilippPro tunability PhilippPro tuneRF Automatic tuning of random forests PhilippPro tuneRanger Automatic tuning of random forests PhilippPro vimp Photosynq PhotosynQ-R R package to conveniently access project data from the PhotosynQ website PhyloMeth Correlation Exercises for understanding correlation between chars PhyloMeth GetTrees Assignment in pulling in publicly available phylogenies. PhyloMeth GettingStarted PhyloMeth LikelihoodTrees Building a phylogeny using likelihood PhyloMeth get-trees-JillTB get-trees-JillTB created by Classroom for GitHub PhyloMeth get-trees-KarimPwnz get-trees-KarimPwnz created by GitHub Classroom PhyloMeth get-trees-QianZhang07 get-trees-QianZhang07 created by Classroom for GitHub PhyloMeth get-trees-Ruddeck get-trees-Ruddeck created by Classroom for GitHub PhyloMeth get-trees-SantosMEA get-trees-SantosMEA created by Classroom for GitHub PhyloMeth get-trees-Taxon-oh-my get-trees-Taxon-oh-my created by Classroom for GitHub PhyloMeth get-trees-andres-snchz get-trees-andres-snchz created by Classroom for GitHub PhyloMeth get-trees-apmotta get-trees-apmotta created by Classroom for GitHub PhyloMeth get-trees-cyarber2 get-trees-cyarber2 created by Classroom for GitHub PhyloMeth get-trees-dracoverde get-trees-dracoverde created by Classroom for GitHub PhyloMeth get-trees-drossoni get-trees-drossoni created by Classroom for GitHub PhyloMeth get-trees-ghuertaramos get-trees-ghuertaramos created by Classroom for GitHub PhyloMeth get-trees-gitarunprasanna83 get-trees-gitarunprasanna83 created by Classroom for GitHub PhyloMeth get-trees-heidimonroy get-trees-heidimonroy created by GitHub Classroom PhyloMeth get-trees-heitorsampaio get-trees-heitorsampaio created by Classroom for GitHub PhyloMeth get-trees-jbr1848 get-trees-jbr1848 created by Classroom for GitHub PhyloMeth get-trees-jesusNPL get-trees-jesusNPL created by Classroom for GitHub PhyloMeth get-trees-jhendy12 get-trees-jhendy12 created by Classroom for GitHub PhyloMeth get-trees-jhonjairo2 get-trees-jhonjairo2 created by Classroom for GitHub PhyloMeth get-trees-jlampley get-trees-jlampley created by Classroom for GitHub PhyloMeth get-trees-kristensgy get-trees-kristensgy created by Classroom for GitHub PhyloMeth get-trees-lPiacentini get-trees-lPiacentini created by Classroom for GitHub PhyloMeth get-trees-lmzapata89 get-trees-lmzapata89 created by Classroom for GitHub PhyloMeth get-trees-mariespe get-trees-mariespe created by Classroom for GitHub PhyloMeth get-trees-morgan-tom get-trees-morgan-tom created by Classroom for GitHub PhyloMeth get-trees-oschwery get-trees-oschwery created by Classroom for GitHub PhyloMeth get-trees-renatabrandt get-trees-renatabrandt created by Classroom for GitHub PhyloMeth get-trees-robsansom1981 get-trees-robsansom1981 created by Classroom for GitHub PhyloMeth get-trees-surfjota get-trees-surfjota created by Classroom for GitHub PhyloMeth getting-started-ElisabethFung getting-started-ElisabethFung created by Classroom for GitHub PhyloMeth getting-started-FlaviaLanna getting-started-FlaviaLanna created by Classroom for GitHub PhyloMeth getting-started-GMLeighton getting-started-GMLeighton created by Classroom for GitHub PhyloMeth getting-started-GZhang2 getting-started-GZhang2 created by GitHub Classroom PhyloMeth getting-started-JenBright getting-started-JenBright created by Classroom for GitHub PhyloMeth getting-started-LSMSugai getting-started-LSMSugai created by GitHub Classroom PhyloMeth getting-started-NilverZ getting-started-NilverZ created by GitHub Classroom PhyloMeth getting-started-QianZhang07 getting-started-QianZhang07 created by Classroom for GitHub PhyloMeth getting-started-RWFulweiler getting-started-RWFulweiler created by Classroom for GitHub PhyloMeth getting-started-Ruddeck getting-started-Ruddeck created by Classroom for GitHub PhyloMeth getting-started-RyanDR getting-started-RyanDR created by GitHub Classroom PhyloMeth getting-started-SantosMEA getting-started-SantosMEA created by Classroom for GitHub PhyloMeth getting-started-Sklenarf getting-started-Sklenarf created by GitHub Classroom PhyloMeth getting-started-Tagliacollo getting-started-Tagliacollo created by Classroom for GitHub PhyloMeth getting-started-Taxon-oh-my getting-started-Taxon-oh-my created by Classroom for GitHub PhyloMeth getting-started-ammaraziz getting-started-ammaraziz created by GitHub Classroom PhyloMeth getting-started-amsuttie getting-started-amsuttie created by GitHub Classroom PhyloMeth getting-started-andr-sa getting-started-andr-sa created by Classroom for GitHub PhyloMeth getting-started-andres-snchz getting-started-andres-snchz created by Classroom for GitHub PhyloMeth getting-started-annikals getting-started-annikals created by Classroom for GitHub PhyloMeth getting-started-apmotta getting-started-apmotta created by Classroom for GitHub PhyloMeth getting-started-asyenina getting-started-asyenina created by Classroom for GitHub PhyloMeth getting-started-aweeks3 getting-started-aweeks3 created by GitHub Classroom PhyloMeth getting-started-azuluagat getting-started-azuluagat created by GitHub Classroom PhyloMeth getting-started-bioals getting-started-bioals created by Classroom for GitHub PhyloMeth getting-started-castrodt getting-started-castrodt created by GitHub Classroom PhyloMeth getting-started-cct663 getting-started-cct663 created by Classroom for GitHub PhyloMeth getting-started-confrench33 getting-started-confrench33 created by Classroom for GitHub PhyloMeth getting-started-costaj getting-started-costaj created by GitHub Classroom PhyloMeth getting-started-cteno4s getting-started-cteno4s created by GitHub Classroom PhyloMeth getting-started-cyarber2 getting-started-cyarber2 created by Classroom for GitHub PhyloMeth getting-started-dracoverde getting-started-dracoverde created by Classroom for GitHub PhyloMeth getting-started-drossoni getting-started-drossoni created by Classroom for GitHub PhyloMeth getting-started-dwhipp3980 getting-started-dwhipp3980 created by Classroom for GitHub PhyloMeth getting-started-geferreira getting-started-geferreira created by Classroom for GitHub PhyloMeth getting-started-ghuertaramos getting-started-ghuertaramos created by Classroom for GitHub PhyloMeth getting-started-gitarunprasanna83 getting-started-gitarunprasanna83 created by Classroom for GitHub PhyloMeth getting-started-heidimonroy getting-started-heidimonroy created by GitHub Classroom PhyloMeth getting-started-heitorsampaio getting-started-heitorsampaio created by Classroom for GitHub PhyloMeth getting-started-isasgeir getting-started-isasgeir created by Classroom for GitHub PhyloMeth getting-started-jbkelly8686 getting-started-jbkelly8686 created by GitHub Classroom PhyloMeth getting-started-jhendy12 getting-started-jhendy12 created by Classroom for GitHub PhyloMeth getting-started-jhonjairo2 getting-started-jhonjairo2 created by Classroom for GitHub PhyloMeth getting-started-jocampos05 getting-started-jocampos05 created by Classroom for GitHub PhyloMeth getting-started-kemendle getting-started-kemendle created by GitHub Classroom PhyloMeth getting-started-kmassana getting-started-kmassana created by Classroom for GitHub PhyloMeth getting-started-kristensgy getting-started-kristensgy created by Classroom for GitHub PhyloMeth getting-started-lPiacentini getting-started-lPiacentini created by Classroom for GitHub PhyloMeth getting-started-lmzapata89 getting-started-lmzapata89 created by Classroom for GitHub PhyloMeth getting-started-m2musa90 getting-started-m2musa90 created by GitHub Classroom PhyloMeth getting-started-mishek getting-started-mishek created by GitHub Classroom PhyloMeth getting-started-morgan-tom getting-started-morgan-tom created by Classroom for GitHub PhyloMeth getting-started-moura464 getting-started-moura464 created by GitHub Classroom PhyloMeth getting-started-oschwery getting-started-oschwery created by Classroom for GitHub PhyloMeth getting-started-philodryas getting-started-philodryas created by Classroom for GitHub PhyloMeth getting-started-renatabrandt getting-started-renatabrandt created by Classroom for GitHub PhyloMeth getting-started-reptilerhett getting-started-reptilerhett created by GitHub Classroom PhyloMeth getting-started-robsansom1981 getting-started-robsansom1981 created by Classroom for GitHub PhyloMeth getting-started-rwoolive getting-started-rwoolive created by Classroom for GitHub PhyloMeth getting-started-sborstein getting-started-sborstein created by Classroom for GitHub PhyloMeth getting-started-sean-mchugh getting-started-sean-mchugh created by GitHub Classroom PhyloMeth getting-started-serotina getting-started-serotina created by Classroom for GitHub PhyloMeth getting-started-sgalen getting-started-sgalen created by Classroom for GitHub PhyloMeth getting-started-sphingoquedius getting-started-sphingoquedius created by Classroom for GitHub PhyloMeth getting-started-ssheffi2 getting-started-ssheffi2 created by GitHub Classroom PhyloMeth getting-started-surh getting-started-surh created by Classroom for GitHub PhyloMeth getting-started-tafinha getting-started-tafinha created by Classroom for GitHub PhyloMeth getting-started-tdavi113 getting-started-tdavi113 created by GitHub Classroom PhyloMeth getting-started-twpierson getting-started-twpierson created by Classroom for GitHub PhyloMeth getting-started-vanessaapk getting-started-vanessaapk created by Classroom for GitHub PhyloMeth getting-started-vanessaqueiroz getting-started-vanessaqueiroz created by Classroom for GitHub PhyloMeth getting-started-wymanch getting-started-wymanch created by GitHub Classroom PhyloMeth getting-started-ymilesz getting-started-ymilesz created by GitHub Classroom PieGes synerdrug R package for drug synergy estimation PieceMaker RMinions No description or website provided. PieceMaker rminions PietaSchofield pietalib Personal R library Pill-GZ CASC Covariate Assisted Spectral Clustering Rcpp package PingYangChen DiscrimOD Using Hybridized PSO algorithm to search for the optimal approximate discrimination design PingYangChen milr multiple-instance logistic regression with lasso penalty. PiotrLeTrong regressr PiotrPython exSTRa PiotrRadzinski SuperFarmerADiPR PirateGrunt ImportR Code to aid ETL in R PirateGrunt MRMR Multivariate Regression Model for Reserving PirateGrunt OnLevel Produces on-level factors in R PirateGrunt OriginPeriod PirateGrunt RxR Reinsurance Data Exchange in R PirateGrunt TimeSeries PirateGrunt imaginator Randomly simulate inception and settlement of general insurance losses PirateGrunt imagine Randomly simulate inception and settlement of general insurance losses PirateGrunt momentus PirateGrunt plr Produce a rate change indication PirateGrunt raw R actuarial workshops - Instruction materials, data and source code for R workshops for actuaries PirateGrunt raw_package Data package for R actuarial workshops PirateGrunt represtools Reproducible Research Tools PirateGrunt stanard Randomly simulate inception and settlement of general insurance losses Pisca46 edfReader R package to read EDF(+) and BDF(+) files PlantDefenseMetabolism Bioinformatics_ApplicationNote PlantDefenseMetabolism MetCirc A workflow for metabolomics data in R PlantDefenseMetabolism MetabolomicTools A workflow for metabolomics data in R PlantDefenseMetabolism indiscriminant-MS-MS-assembly-pipeline PlantandFoodResearch rkaka R API to the biological database system Kaka PoGibas Rsaw R package to analyze sequencing data PoisonAlien maftools :cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies. PoisotLab betalink MIRROR - beta diversity of species interaction networks PoisotLab lpbrim LP & BRIM bipartite modularity detection in R PoisotLab paco Procrustes analysis of cophylogenies PolMine cqi R implementation of CQI (client-server protocol for the CWB) PolMine ctk corpus toolkit PolMine polmineR R-package for text mining with the Corpus Workbench (CWB) as backend PolMine polmineR.graph PolMine polmineR.misc miscellaneous extensions for the polmineR base package PolMine polmineR.plpr Plugin for polmineR-package for corpora of plenary protocols PolMine polmineR.sampleCorpus A small sample corpus of debates in the German Bundestag (used for examples in polmineR) PolMine polmineR.shiny Shiny apps and widget for the polmineR package PolMine polmineR.topics PolMine rcqp.mac PolMine trickypdf Turn pdf document into simple annotated XML for further processing in a corpus preparation pipeline. PolicyAnalysisInc heRoMod An R package for running cost-effectiveness models in R. Forked from the heemod package. Polkas EarthQuakeCapstone Polkas farsfuns Pooja-Rajkumar rectools Advanced package for recommender systems PopulationEcologyDivision bio.survey PortfolioAnalyser PART Portfolio Analyser R Toolbox PotapovAS PCRcloudCore R package http://www.pcrcloud.ru/ Poush87 foofactors Binds factors as one factor PranaGeo Spectral An R package for working with Spectral data PranaGeo geoSpectral An R package for working with Spectral data with spatio-temporal attributes Pratheek-Dev Rstdev Pratheek-Dev circles PredictiveEcology NetLogoR A translation of NetLogo functions, dictionary, and framework for R. Intended to be used with a discrete event simulator, like SpaDES PredictiveEcology SpaDES R package for developing and running Spatial Discrete Event Simulation models PredictiveEcology SpaDES.Workshops Workshops given for various audiences with the SpaDES package PredictiveEcology SpaDES.addins Tools and RStudio addins for 'SpaDES' and 'SpaDES' module development PredictiveEcology SpaDES.core Core functionality for Spatial Discrete Event Simulation (SpaDES) PredictiveEcology SpaDES.shiny Utilities for building 'shiny' apps for 'SpaDES' simulations PredictiveEcology SpaDES.tools Additional modelling tools for Spatial Discrete Event Simulation (SpaDES) module development PredictiveEcology SpatialClasses A package of faster, though simpler, alternatives to Raster* (raster package) and SpatialPoints* (sp package) classes PredictiveEcology fpCompare Reliable comparison of floating point numbers in R PredictiveEcology lazyR An R package for stashing objects in lazy load databases, analogous to lazy loaded packages PredictiveEcology plotSim An R package designed to allow rapid, modular plotting and visualizing, useful in simulation modeling PredictiveEcology quickPlot A system of plotting that uses grid optimized for speed and modularity PredictiveEcology reproducible A set of tools for R that enhance reproducibility beyond package management PredictiveEcology spatSim Tools for building spatial simulation models PredictiveEcology webDatabases A set of functions for finding and downloading web datasets, with an initial focus on datasets relevant for work in Canadian Forests PriceLab FPML Footprint Machine Learning PriceLab GeneRegulationUtilities an R package with miscellaneous functions and public data for the exploration and analysis of gene regulation PriceLab LocNotes informal annotation of chromosomal locations PriceLab MotifDb This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb. PriceLab TReNA Fit transcriptional regulatory networks using gene expression, priors, machine learning PriceLab TReNA-server regulatory model creation as a microservice PriceLab snpFoot an R package with miscellaneous functions and public data for the exploration and analysis of gene regulation PrincetonUniversity agroEcoTradeoff Spatial tradeoff model PrincetonUniversity lmisc Miscellaneous R scripts for plotting, etc. ProfMalloryResearch BBOToolkit Tools for Working with CME Group's Historical BBO Data sets ProfMalloryResearch BBOTools Some tools for working with the BBO datasets. ProjectMOSAIC NHANES R package containing versions of NHANES data ProjectMOSAIC fetch Functions to fetch data ProjectMOSAIC mosaic Project MOSAIC R package ProjectMOSAIC mosaicCalc Calculus in R ProjectMOSAIC mosaicCore Utilities needed for other mosaic-family packages ProjectMOSAIC mosaicData R package with Project MOSAIC datasets ProjectMOSAIC mosaicModel Utilities for creating, visualizing, and predicting with models ProjectMOSAIC repeatR r package for chaining replication ProjectMOSAIC shinyMosaic Interactive apps related to Project MOSAIC ProjectTw TwitteR2Mongo R Package to stream and analyze tweets using a mongodb Prometheus77 actools Contains several helper functions for R Prometheus77 foodpoints Food point counting helper Prometheus77 ucimlr R interface to UCI's machine learning repository ProvTools cleanR Isolate essential code to re-produce specific results. ProvTools provR Przemol BSgenome.Celegans.UCSC.ce10 Mirror of BSgenome.Celegans.UCSC.ce10 Przemol BSgenome.Hsapiens.UCSC.hg19 Mirror of BSgenome.Hsapiens.UCSC.hg19 Przemol WB.WS259 :floppy_disk: R package to access WB annotations Przemol deds Przemol mirrors-bioc-BSgenome Przemol rbeads :triangular_ruler:R implementation of Bias Elimination Algorithm for Deep Sequencing Przemol seqplots 📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps. Przemol seqplots-release Przemol testrepo PsyChiLin EFAshiny An User-Friendly Application for Exploratory Factor Analysis PsyChiLin ERPEDA PsyChiLin ERPplot PublicHealthEngland fingertipsR Puriney HITS-CLIP Puriney honfleuR "Evening, honfleuR" by Seurat PuttickMacroevolution MCMCTreeR MCMCTreeR: A package to estimate distirbution values for temporal node constraints and prepare input files for MCMCTree PuttickMacroevolution cladeMode QBRC MiClip QBRC RODProt An R Client for Interacting with data encoded in one of the 'Open Data Protocols' standards. QBRC sgfinder QCBS qcbsmdc R package to pull data from the Mobile Data Collection System of the Quebec Centre for Biodiversity Science QMmmmLiu DACFD QSG-Group WISH QTCAT hit Hierarchical Inference Testing in R QTCAT iqtcat QTCAT qtcat Quantitative Trait Cluster Association Test in R QTCAT qtcat.data QTAC example dataset package. Qalfredo stackmath Repository created for final project QianMazi MaziBox MaziBox QianMazi TEST QianMazi tmpProj QinganZhao GA An R package for variable selection in regression problems based on genetic algorithm QinglongYan ANSSI QuackenbushLab MONSTER QuackenbushLab pandaR QuackenbushLab yarn YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization QuantAndrew QDataGet QuantAndrew QFactorGet QuantAndrew QUtility QuantAndrew quantbox QuantGen BEDMatrix A matrix-like wrapper around PLINK .bed files QuantGen BGData A Suite of Packages for Analysis of Big Genomic Data QuantGen BGLR Bayesian Generalized Linear Regression QuantGen BINMatrix QuantGen LinkedMatrix Column-Linked and Row-Linked Matrices QuantGen MTM Multivariate Gaussian Models for Genomic and Pedigree Data QuantGen grmMatrix QuantGen symDMatrix Partitioned Symmetric Matrices R-Finance FactorAnalytics R-Finance FinancialInstrument R-Finance MPO R-Finance Meucci R-Finance PApages R-Finance PerformanceAnalytics R-Finance PortfolioAnalytics R-Finance PortfolioAttribution R-Finance RTAQ R-Finance blotter R-Finance quantmod R-Finance quantstrat R-Finance xtime R-Finance xts R-Finance xtsExtra R-Lum BayLum R package BayLum R-Lum Luminescence Development version of the R package 'Luminescence' R-Lum RLumModel Solving Ordinary Differential Equations to Understand Luminescence R-latinoamerica clrutr Funciones para formatear y validar RUT (cl) R-latinoamerica idlatr Funciones para formatear y validar identificadores (RUT, CUIT, DNI) RACFoundation oneminutetrafficdata The oneminutetrafficdata R package RAPLER dst-1 Combine basic probability assignments with Dempster's rule of combination RAW21 HeadClean Dev branch for the Racket-Finder-Demo app RAW21 aRmClassify Association Rule Mining based classifier RBigData hpcvis Benchmarking and Plot Utilities for Hardware Counters RBigData kazaam Basic matrix and statistics operations for very tall distributed matrices. RBigData pbdADIOS Package to read from ADIOS, including staging. RBigData pbdBASE Set of base classes and methods for the pbdR project. RBigData pbdCS A set of utilities for interactively using pbdR. RBigData pbdDEMO Demonstration scripts and utility functions for the pbdR system of packages. RBigData pbdDMAT Distributed matrix classes and methods for the pbdR project. RBigData pbdIO An interface to parallel input output packages with a focus on Single Program/Multiple Data ('SPMD') parallel programming style, which is intended for batch parallel execution. RBigData pbdML RBigData pbdMPI MPI bindings for the pbdR project. RBigData pbdMR RBigData pbdPAPI A hardware counter profiler for R. RBigData pbdPROF MPI Profilling Tools. RBigData pbdSBASE Utilities for sparse, distributed matrix computations in R using PETSc RBigData pbdSHAQ Basic matrix operations for very tall distributed matrices. RBigData pbdSLAP ScaLAPACK/PBLAS/BLACS/LAPACK library for use with pbdR. RBigData pbdTEST A simple testing framework for pbd packages. RBigData remoter Control a remote R session from your local R session. RBigData scribe Benchmarking and Plot Utilities for Hardware Counters RCura webmaps An R package for creating 'slippy web maps' from spatial data. Easily create HTML pages that show your points, lines, and polygons on world map data. RDAdams RedShifteR R upload to Redshift (creates CSV, uploads and leaves to find a new home somewhere in Surrey. RDFBones RDFBonesQuery RDocTaskForce documentation R Documentation Infrastructure RDocTaskForce parsetools An R package for dealing with parse data. REditorSupport languageserver An implementation of the Language Server Protocol for R RGLab CDSprocessR CDS Dataspace Processing and QC RGLab CytoML RGLab HIV.db HIV annotation database RGLab ImmuneSpaceR A thin wrapper around Rlabkey to access the ImmuneSpace database from R RGLab Import2ImmPort Tools for preparing ImmPort Submission RGLab LumiR The LumiR package RGLab MAST Tools and methods for analysis of single cell assay data in R RGLab MASTdata Data for the MAST single-cell transcriptomics modeling and inference paper RGLab MIMOSA Mixture Models for Single Cell Assays RGLab MIMOSA2 Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data RGLab Pviz RGLab R2i Tools for preparing ImmPort Submission RGLab RNASeqPipelineR Streamline the processing of RNASeq data RGLab Rlabkey The Rlabkey package with some minor tweaks RGLab boost2protobuf Load the legacy GatingSet archived in Boost serialization format RGLab cytoUtils RGLab flowClust Bayesian flowClust RGLab flowDensity RGLab flowIncubator Routines that don't belong to the core flow packages yet. RGLab flowMerge Merging mixture components for cell population modeling of flow cytometry data RGLab flowReMix A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data. RGLab flowWorkspaceData The example cytometry data used for testing openCyto tool chains RGLab geeod RGLab opencytoCL OpenCyto Command Line Tools RGLab pepBayes Bayesian hierarchical modeling for subject-level response classification in peptide microarray immunoassays RGLab pepDat RGLab pepStat Peptide microarray statistical analysis RGLab preprocessData An R package to enable data processing and packaging outside the usual R package build procedure. RHESSys RHESSysIOinR A package containing functions for running RHESSys from R RInstitute dqmagic R interface to libmagic RL10N msgtools Tools for Developing Diagnostic Messages RL10N nsprintf Easy, internationalized message pluralization RL10N poio Input/Output Functionality for PO and POT Files RLesur rstudioTypoFr RStudio Addins for French Typographic Characters RLesur weasydoc Convert R Markdown to PDF Using Weasyprint RLumSK Psync Downloading Images via Wi-Fi from PENTAX (TM) Cameras RMHoek NOAAearthquakeAnalysis RMHoek farsfunctions RMHogervorst TNG TNG dataset, contains every line and every description of all the episodes of TNG RMHogervorst badgecreatr Quickly place relevant badges at the top of your readme, stop copy pasting, start on your project RMHogervorst coffeedata timestamped moments when I drank a coffee. RMHogervorst coffeegeeks #rstatsforcoffeegeeks RMHogervorst corticalio a package to interface with the Cortical.io api RMHogervorst heisertransform Transform you probabilties into coordinates to display RMHogervorst imdb IMDB r package based on omdbapi.com RMHogervorst musicgraph interface with musicgraph.com service RMHogervorst reproresearchassignment2 RMHogervorst template small personal package to quickly use templates RNED agriTutorial Tutorial analysis for agricultural experiments using R RNED blocks_design RNED blocksdesign ROctopus rocto-rpackage The R-package for rocto RPackageGroupProject GA make an R package to implement a genetic algorithm for variable selection in regression problems, including both linear regression and GLMs. RPintoC FCSlib RRHO2 RRHO2 RRShieldsCutler splinectomeR R package version of the splinectomy longitudinal statistical analysis tools RRemelgado rsMove Remote Sensing for Movement Ecology RRisto Riigiteenused-dev trying new stuff RRisto StatLearning1 RRisto brushAddin my first rstudio addin RRisto riigiteenused riigiteenuste andmete allalaadimise tarkvara pakett RRisto slidify RS-eco climateNiche Analyse the climatic niche of a species RS-eco ggmap2 Creating maps with ggplot2 RS-eco processNC R Package for processing large NetCDF files in R RS-eco rISIMIP R Package for handling ISIMIP data RS-eco rasterSp R package to rasterize and summarise IUCN range data RS-eco trix Calculate the trophic index RSGInc RSGHB Functions for Hierarchical Bayesian Estimation: A Flexible Approach RSGInc VisionEvalRPAT RPAT as VisionEval Model RSGInc VisionEvalSyntheticFirms VisionEval Synthetic Firms Module RSPaW RSSApkg Utility scripts for remote sensing and spatial analysis work RSchleutker ZMBEFunctions Some simple functions for making everyday calculations easier. RSchleutker functioBiol Provides Modified Functionalities for Biological Purposes RSimran RXGBfi RSimran Simran Data Science R Toolbox by Simran RTCGA RTCGA Download, integration and visualizations of the variety & volume of TCGA data. RTCGA RTCGA.CNV CNV datasets from The Cancer Genome Atlas Project RTCGA RTCGA.CNV.20160128 RTCGA RTCGA.PANCAN12 PanCan 12 from Genome Cancer Browser RTCGA RTCGA.RPPA RPPA datasets from The Cancer Genome Atlas Project RTCGA RTCGA.RPPA.20160128 RTCGA RTCGA.clinical Clinical datasets from The Cancer Genome Atlas Project RTCGA RTCGA.clinical.20160128 RTCGA RTCGA.cnv CNV datasets from The Cancer Genome Atlas Project RTCGA RTCGA.mRNA mRNA datasets from The Cancer Genome Atlas Project RTCGA RTCGA.mRNA.20160128 RTCGA RTCGA.methylation Methylation datasets from The Cancer Genome Atlas Project RTCGA RTCGA.methylation.20160128 RTCGA RTCGA.miRNASeq miRNASeq datasets from The Cancer Genome Atlas Project RTCGA RTCGA.miRNASeq.20160128 RTCGA RTCGA.mutations Mutations datasets from The Cancer Genome Atlas Project RTCGA RTCGA.mutations.20160128 RTCGA RTCGA.rnaseq RNASeq datasets from The Cancer Genome Atlas Project RTCGA RTCGA.rnaseq.20160128 RTCGA RTCGA.rppa RTIInternational mobForest RTIInternational rollmatch Rolling Entry Matching R Package RTbecard LUAnimBehav A package containing animal behavior analysis tools used by students in Leiden University's Animal Behavior group RTbecard NMixBenchmark A collection of functions for testing the robustness of N-Mixture models on simulated datasets RTbecard ezPSD An R package for power spectral density analysis RTbecard openLakeData An R package which pulls LakeNet data from www.worldlakes.org RTbecard pullABMI An R package for downloading species abundance data from the Alberta Biodiversity Monitoring Institute. RTbecard pullBBS An R package for downloading species abundance data from the North American Breeding Bird Survey ftp server. RTbecard relationaldfs A package for using relational data sets in R. RTbecard toal A set of tools for loading, cleaning, and localizing points from acoustic tag detections from hydrophone arrays with at least 4 hydrophones. RTrek startrekpackage a package for startrek the next generation RachelRamirez NPS National Park Service data visuals RachellyN FIT RachellyN FIT_mouse2man Ractuary devtri Easily work with actuarial development triangles RadojevicM OLSLog2 RafaelSdeSouza nuclear RaikOtto GeneraPipe Generic mRNA Analysis Pipeline RaikOtto Uniquorn Identification of cancer cell lines based on their mutational fingerprint RaikOtto Uniquorn_rna_panel_project RNA-seq and DNA-panel-seq based identification of CCLs RaikOtto Younikorn identification of cancer cell lines based on their somatic mutational fingerprint Raikao lab_3 Advanced R Programming lab 3 RajeswaranV proportion R package for proportion RajeswaranV vcdPlus Categorical data analysis Ram-N weatherData A simple R package that fetches Weather data from WeatherUnderground RamiKrispin MLstudio The ML Studio Package RamiKrispin TSstudio Tools for time series analysis and forecasting RamsinghLab ATACseeker ATACseq tools for Bioconductor RamsinghLab TxDbLite This is TxDbLite with respect arkas arcolombo branch (staging area) RamsinghLab TxDbLite_arkas This is TxDbLite with respect arkas arcolombo branch (staging area) RamsinghLab arkas This is the kallisto package RamsinghLab arkasData staging area for building arkasData RamsinghLab arkasData_staging staging area for building arkasData RamsinghLab arkas_staging This is the kallisto package RamsinghLab artemis an R package with support functions and utilities for RNAseq analysis (scroll for more) RamsinghLab artemisData files for artemis examples -- see ?artemisData for more RamsinghLab ozymandias Look on my works, ye Mighty, and despair... just kidding, it's a slightly better meth lab RandiIP blm Exam Project for Data Science RandiLGarcia dyadr r package for dyadic data analysis RandiLGarcia toydyad a repository for the toydyad package Raoke powrballad Choosing an optimal ballad for Kareoke Raphael-Selignan Homework Raphael-Selignan artemis Rapporteket Hjerneslag R-filer for Hjerneslag Rapporteket NORIC Report generating scripts in R/knitr for the Norwegian Registry for Invasive Cardiology Rapporteket Nakke R-filer for Degenerativ Nakke Rapporteket hisreg Rapporteket intensiv R-pakke for å generere resultattjeneste for Intensivregisteret Rapporteket muskel Resultatrapporter for Muskelregisteret Rapporteket nger Rapporteket nkr R-pakke for å generere resultattjeneste for kvalitetsregisteret Degenerativ Rygg Rapporteket nordicscir R-filer for å generere resultater fra NordicScir Rapporteket nordummy A minimalistic dummy for a registry R project Rapporteket norgast R-pakke med resultatrapporter for NoRGast Rapporteket norscir R functions for the registry NorSCIR as an R-package Rapporteket nra Rapporteket rapbase Base R functions for Rapporteket Rapporteket rapgen An R package for functions and stuff that neither fits into 'rapbase' nor any registry spesific package Rapporteket smertereg Rapporter pander An R Pandoc Writer Rapporter rapport rapport is an R package that facilitates the creation of reproducible statistical report templates Rapporter rapportools Miscellaneous stats helper functions with sane defaults for reporting Rapporter sandboxR This POC package tries to filter "malicious" calls in R expressions based on a blacklist to let shared R instances be safe from file and system calls. Rastamas SQLVis Plot basic diagrams using SQL queries and HAWQ RatyO rPlots RavenPack r-api R Package to consume RavenPack data API Raydonal ReactionTime Reaction Time Distributions Raydonal prLogistic Estimation of Prevalence Ratios using Logistic Models RaynorJim fndigest fndigest RazorfishGermany reportingManager Produce great analytics datasets using Google Docs & RGoogleAnalytics Rb-Engineering PoloniexR Rchieve 732A94_Lab3 Rchieve 732A94_Lab4 Rchieve 732A94_Lab6 Rchieve 732A94_Lab7 Rchieve GoogleGeoAPI RcppCore Rcpp Seamless R and C++ Integration RcppCore RcppArmadillo Rcpp integration for Armadillo templated linear algebra library RcppCore RcppEigen Rcpp integration for the Eigen templated linear algebra library RcppCore RcppNT2 Rcpp integration for the NT2 scientific computing library RcppCore RcppParallel High-level functions for parallel programming with Rcpp Rdataflow data.flow Rdatatable data.table R's data.table package extends data.frame. HOMEPAGE: RebeccaSalles TSPred TSPred Package for R : Functions for Benchmarking Time Series Prediction RebeccaStubbs MapSuite An R package for making layered maps over time or other dimensions. RebeccaStubbs woodson R package with functions and color palettes for beautiful chloropleth maps. RedJane tfbs.qsam R package for transcription factor binding site analysis using QSAM-representation of DNA sequences RedTent farsfunctionsJT Rekyt dependency R Package to make a dependency graph out of a bunch of scripts Rekyt divr R package for custom functions Rekyt funrar R package to characterize Functional Rarity Rekyt outlieR R package for functional rarity indices Rekyt rwdpa R package to use the World Database of Protected Areas (ProtectedPlanet) API RemkoDuursma baadViz Visualize the BAAD RemkoDuursma bootpredictlme4 A predict method for merMod models with the bootstrap RemkoDuursma fitplc The fitplc R package RemkoDuursma nlshelper Convenience functions for non-linear regression with nls RemkoDuursma plantecophys Analysing and Modelling Leaf Gas Exchange Data in R RemkoDuursma plover A collection of base plotting functions RemkoDuursma speciesmap Species Occurrences and Climate Data RemyNicolle CoRegNet RemyNicolle CoRegNet-dev RemyNicolle CoRegNet-release Watch ReneSchulenberg test test ReportMort beard A Simple Webservice to Predict Proportion of Men with Beards ReportMort googlesites Classic Google Sites API from R ReportMort pothole Edmonton Pothole Prediction Service ReportMort rdfp Double Click for Publishers (DFP) API from R ReportMort roas Open Ad Stream (OAS) API from R ReportMort sectioncomment RStudio Addin to Create Section Comments Reproducible-Science-Curriculum teaching-automation Resara ross A collection of R functions that I wrote and commonly use. Mainly for dealing with genomics data RetoSchmucki rbms A home for the latest rbms R package RetoSchmucki regionalGAM ReubenBuck mySNPs Revmaker CarlabsML RevoEnhancements RevoEnhancements Enhancements to Revolution R Enterprise's RevoScaleR RevolutionAnalytics AzureML An R interface to AzureML(https://studio.azureml.net/) experiments, datasets, and web services. RevolutionAnalytics azureml Interface to Azure ML RevolutionAnalytics checkpoint Install R packages from snapshots on checkpoint-server RevolutionAnalytics dplyrXdf dplyr backend for Revolution Analytics xdf files RevolutionAnalytics miniCRAN R package to create internally consistent, mini version of CRAN RevolutionAnalytics webapi Build R APIs off web APIs Rexamine CITAN CITation ANalysis toolpack Rexamine DataStructures General data structures and algorithms for use with R Rexamine FuzzyNumbers Tools to Deal with Fuzzy Numbers in R Rexamine TurtleGraphics Turtle Graphics in R Rexamine agop Aggregation Operators Package for R Rexamine icudt ICU data files packaged for use in R Rgui REndo_1.0 R package to address endogeneity RhoInc CRANsearcher RStudio addin to search CRAN packages titles and descriptions RhoInc aeplot R package for summarizing Adverse Event Data Rhoboot Rmail RhysJackson googleKubernetesR An R package for the Google Kubernetes Engine API RicUIB AligNet Protein protein interaction networks alignement Rich1000 lookr A way to get data from Looker into R without row limits RichDeto EPP Evaluation of Proximity Programs RichDeto Trees RichardBirnie mautils Utilities to facilitate an automated workflow for meta-analysis RichardBirnie rbutils A collection of general purpose utility functions RichardBirnie survtools A collection of useful functions for survival analysis RichardHooijmaijers R3port The Rreport package is developed to easily create pdf or html reports including tables, listings and plots created in R RichardHooijmaijers Rout The Rreport package is developed to easily create pdf or html reports including tables, listings and plots created in R RichardLaBrie paRafac_correction Package to correct EEMs and calculate CDOM and FDOM indices RickPack FBadstats R Package for generating statistics from Facebook ads performance data RickPack fbadstats R Package for generating statistics from Facebook ads performance data RiteshRN sandboxR Rjacobucci autoSEM Specification search for SEM using heuristic optimization Rjacobucci dtree R package for running multiple decision tree algorithms Rjacobucci longRPart2 Mixed effects recursive partitioning Rjacobucci regsem Regularized Structural Equation Modeling RobWHickman ggparliament2 ggparliament2 RobbievanAert puniform RobertDickens preproc Package for preprocessing and data exploration RobertFach rRabbit A simple Interface to RabbitMQ RobertHagan DaysSinceWhen RobertMyles CraftCans R package for accessing CraftCans.com canned beer database RobertMyles MEPs RobertMyles SanFranBeachWater Downloads the data provided by the San Francisco Public Utilities Commission on beach water quality. RobertMyles TEST RobertMyles XKCDdata R package for getting data from XKCD comics :japanese_ogre: RobertMyles alligatoRs Downloads and tidies Florida Statewide Alligator Harvest Data RobertMyles bRasilSenate RobertMyles cepR Um pacote R para buscar informações sobre CEPs, endereços, bairros e cidades. (An R package for accessing Brazilian postal code data) :email: RobertMyles congressbr An R package that returns tidy data from the APIs of the Brazilian Federal Senate and Chamber of Deputies. RobertMyles flagfillr Use flags as fills for ggplot2 maps. RobertMyles govspendingbr RobertMyles pmsp Pacote interno a Secretaria da Fazenda (COPLAN/DIPROJ) na Prefeitura de São Paulo :brazil: RobertMyles riscoBrasil An R package to download 'Brazil Risk' data :chart_with_upwards_trend: RobertMyles tidyRSS An R package for extracting tidy data frames from RSS and Atom XML feeds, and JSON feeds Robertus100 tibble RobinHankin gyrogroup Gyrogroups in relativistic physics: noncommutative and nonassociative Lorentz velocity addition; Thomas precession RobinHankin hyper2 RobinHankin knotR Knot Diagrams using Bezier Curves RobinHankin magic create and investigate magic squares and magic hypercubes RobinHankin partitions R package for integer partitions RobinHankin permutations RobinHankin schwarzschild A collection of R routines for producing accurate diagrams of black holes RobinL costmodelr Framework for cost modelling in R RobinL d3_htmlwidget_scaffolding Barebones scaffolding to create an html widget that renders some user-written D3 code RobinL randomdf tiny package to generate random dataframes RobinL randomdfr Robinlovelace geocompr Forthcoming book on geographic data with R Robinlovelace pct-data-man Robinlovelace pct-menai Test repo of code for analysis cycling potential in Wales Robinlovelace pctSeville Analysis and modelling of cycling potential in Seville, Spain Robinlovelace pctWales Test repo of code for analysis cycling potential in Wales Robinlovelace ukborders Package providing UK administrative boundaries Robinlovelace ukboundaries Package providing UK administrative boundaries Roche rtables Reporting tables with R RoelVerbelen MME RogueStatistician msnk An R package implementing various Kurtosis indices for Multivariate Skewed Normal distribution RohanAlexander quinkanR NSW colonial censuses data RohitG28 Plotter RomanHornung survmediation Package in R for the analysis of mediation effects in survival data using the methodology presented by Lange & Hansen (2011) RomanTsegelskyi yummlyr R package with bindings for yummly.com API RomeroBarata bimba Sampling Algorithms for Two-Class Imbalanced Data Sets in R RomeroBarata dcme An R Package to Compute Data Complexity Measures RonGuymon numetricAPI Functions for interacting with Numetric's API using R. RonGuymon ronsFunctions Some of Ron's most used functions Ronggui QCA3 Qualitative Comparative Analysis Ronggui RQDA R-based Qualitative Data Analysis Rongpeng R_Package_Practice Packaging the functions processing the fars data Rongpeng r_pacakge_practice Packaging the functions processing the fars data RossPitman PantheraR RossiLorenzo IndexTree Repo for some C++ code RossiLorenzo QPXapi Access to QPX Express API RossiLorenzo linkedinR R Package to acces the Linkedin API RossiLorenzo oandaR API access to Oanda.com RossiLorenzo trendR Get Google Trends data from R RoyChristian ECSASconnect Import data from the Eastern Canada Seabirds at Sea (ECSAS) database RoyChristian GeoAviR Calling Distance 6.2 MCDS engine via R RoyChristian R2MCDS Calling Distance 6.2 MCDS engine via R RoyChristian startR Homebrewed package holding my most useful functions Rpedigree pedigreeR R functions related to pedigrees Rsoc soc Rsoc soc.ca Specific correspondence analysis in R Rterial Rtbase Rterial filer Rterial rtcdn Rterial rtcdnpub RubD GeTrackViz RubD GeTrackViz2 RubenCrevits robets Robust damped trend exponential smoothing with seasonality RubyFore CensusAPITools R package containing utility functions for interacting with the Census API RubyFore LearningTwitterAPIPython RuggeroFerrazza IsotopicLabeling A package for data analysis of isotopic patterns RuggeroFerrazza IsotopicLabelling A package for data analysis of isotopic patterns RuggeroFerrazza Lab_Project A package for data analysis of isotopic patterns Rumenick flexcure Flexible Parametric Survival Models with Cure Fraction RunaIris TundraData Rupert1712 FMDB FileMaker database functions Rupert1712 opencputest Rupicapra-rupicapra rcsi R package to handle Campbell Scientific (R) data files formats Russel88 COEF Collection Of Esoteric Functions Russel88 DAtest Compare different differential abundance and expression methods Russel88 DOC Dissimilarity Overlap Curve analysis Russel88 MicEco Various functions for analysis of microbial community data Russel88 RCon3D 3D Analysis of confocal images of microbial biofilms/communities RussellPolitzky quake quake is an R package for NOAA data visualization RuyuTan FitHiC Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. RyanGan MSModelR Custom functions to run marginal structural models using simple substitution and inverse probability of treatment weighting RyanGan case.crossover Series of functions for building case-crossover dataframes. RyanGan spatial.functions Personal package for routine spatial calculations. RyanHope ROpenCL RyanHope Rmisc Miscellaneous R functions RyanHope gazetools A collection of functions for processing and classifying eye gaze data in R. RyanHope master RyanHope redf R package for importing EDF/EDF+ files RyanLab microclimloggers An R package to parse and process various microclimate logger data formats. RyanLab ryanlabloggers An R package to process various microclimate logger data formats used by the Ryan lab and collaborators. SAcmu HLSM_0.3 R-package to fit latent space models on hierarchical network data. SAcmu LLSM R package to analyze temporal networks with longitudinal latent space network model (LLSM) SBUtltmedia ANP120_3D_Skulls SBUtltmedia PerfectGas SBUtltmedia dk2_blender_local SBUtltmedia musicnotationR SCAR sohungry R package for Southern Ocean Diet and Energetics Data SCAR solong ... how big were all the fish? SCCC-BBC Example-2-ChipSeq SCCC-BBC GOSJ SCCC-BBC NimerChipSeq SCCC-BBC PathwaySplice An R package SCCC-BBC testR SCCWRP ASCI R package for calculating ASCI scores SCCWRP CSCI CSCI Calculation Package SCCWRP PHAB Materials for calculating PHAB scores SCIL-leuven qpcrviia7 Package for qPCR analysis with Viia7 data SE-A4S formatSE Watch SEEG-Oxford ageStand Age standardisation of malaria prevalence SEEG-Oxford movement R package containing useful functions for the analysis of movement data in disease modelling and mapping SEEG-Oxford seegMBG Streamlined Model-based Geostatistics Functions for the SEEG Research Group SEEG-Oxford seegSDM species distribution modelling code for seeg projects SEELab enaR enaR = Ecological Network Analysis in R SESYNC-ci postGIStools Tools for Interacting with PostgreSQL / PostGIS Databases SESYNC-ci rslurm Submit R calculations to a SLURM cluster SESman eddies Global Ocean Eddies Database SESman rbl R package to help working with biologging data, focused on diving predators. SFG-UCSB voi-package Repo to store VOI package SFWMD dbhydro R interface to the South Florida Water Management District's DBHYDRO Database 💦 SFWMD dbhydroR R interface to the South Florida Water Management District's DBHYDRO Database 💦 SGMAP-AGD opensignauxfaibles just a set of useful functions for the signauxfaibles project SGMAP-AGD opensirene R client to the open sirene API SICSresearch IRTpp Unidimensional IRT R package with C++ implementation SICSresearch IRTpp_old Item Response Theory Software made in Cpp and R SICSresearch LatentREGpp Multidimensional Item Response Theory R Package with C++ multi-thread implementation SIMIDAT SDEFSR R package for Subgroup Discovery algorithms with Evolutionary Fuzzy Systems SIgNBioinfo ClusterX SIgNBioinfo cytofkit A BioConductor package of Integrated Mass Cytometry Data Analysis Pipeline SKDE-Analyse dynamiskTabellverk Diverse r-funksjoner til bruk av dynamisk tabellverk (Rshiny) SKKU-SKT ggplot2.SparkR Rebooting ggplot2 for scalable big data visualization SLeviyang RegressHaplo SMAC-Group TTS "A Tour of Time Series Analysis with R" (TTS) is a text that is aimed to provide better explanations for students investigating dependency within observations. SMAC-Group classimu SMAC-Group datapkg Data sets used in various packages. SMAC-Group exts Experimental Features for Time Series SMAC-Group gmwm Generalized Method of Wavelet Moments (GMWM) is an estimation technique for the parameters of time series models. It uses the wavelet variance in a moment matching approach that makes it particularly suitable for the estimation of certain state-space models. SMAC-Group gmwm_gui SMAC-Group gui4gmwm SMAC-Group imudata This repository holds the GMWM IMU R data package. The data found here is able to be used with the methods in GMWM. SMAC-Group panning An implementation of the Panning Algorithm SMAC-Group simts Time Series Simulation SMAC-Group smacdata Data sets used in various packages. SMAC-Group stat297 SMAC-Group wv SMAPPNYU smappR R tools for analysis of Twitter data SMBC-NZP BBSclim SMBC-NZP MigConnectivity SNaveenMathew EnsembleModel SNaveenMathew gdeltR SOC345 lehmansociology Code for SOC 345 at Lehman College SPATIAL-Lab isorig ORIGIN code SPDSdeCarolina CoherencePack SPIDDOR SPIDDOR Modeling, simulation and analysis of Boolean networks applied to Systems Pharmacology. SPIRBURG-inc tableONE A simple package for making "Table One" study population tables SPOMAN osc Tools for the Organic Surface Chemistry group SPOMAN osctools Tools for the Organic Surface Chemistry group SQuartinAS renamer Quickly add a new script to a workflow by automatically renumbering the existing scripts. SRenan CPPICS SRenan ISpaceR R function for gene-expression on ImmuneSpace.org SRenan ImmuneSpaceData Data package for www.immunespace.org SRenan PICS SRenan PING SRenan XCIR XCIR SSDALab dnr SSW-DataLab sswdlHelpR An R package of functions helpful to the UM-SSW DataLab SSW-DataLab sswdlsupdata STAT-UP statupinternal R package with all kinds of functions that haven't fund their appropriate place yet. STAT545-UBC foofactors Make factors less annoying STOR-i sgmcmc sgmcmc: a stochastic gradient MCMC package for R SVA-SE freedom An R package to calculate probability of freedom from disease in a population based on surveillance data SVA-SE kilde R Package for Bayesian source attribution SVA-SE mill SVA-SE svamap A package to produce a leaflet map from data that is stored in a CSV file. SVA-SE svamp An R package that generates a geographic summary report for farm data in Sweden SVA-SE svdc A package to clean data that goes into the svamp report SWS-Methodology faoswsAupus SWS-Methodology faoswsBalancing Maximum Likelihood Balancing FBS SWS-Methodology faoswsEnsure The package ensure inputs and outputs are valid for both functions and modules. SWS-Methodology faoswsFeed Moving of Feed module to new system SWS-Methodology faoswsFlag This is an add-on package to the faosws library to support the manipulation and the aggregation of flags. SWS-Methodology faoswsFood Repository for food computation of the food balance sheets SWS-Methodology faoswsImputation Repository for storing code and associated files for the imputation package. This package implements flexible data imputation with the use of ensembles of models. SWS-Methodology faoswsIndustrial Compute industrial utilization for food balance sheets SWS-Methodology faoswsLoss Package to perform the computation of food loss FAO food balance sheets SWS-Methodology faoswsModules Package to assist in making of modules for the Statistical Working System SWS-Methodology faoswsProcessing Repository containing function for standard data processing SWS-Methodology faoswsProduction Repository to contain the code for imputing production data in the statistical working system. SWS-Methodology faoswsSeed Repository for estimating seed usage for FBS SWS-Methodology faoswsStandardization Standardization logic for Food Balance Sheets SWS-Methodology faoswsStock SWS-Methodology faoswsTest SWS-Methodology faoswsTourist SWS-Methodology faoswsTrade World trade data processing for the FAO Statistical Working System SWS-Methodology faoswsUtil This is an add-on utilities package to the faosws package SWS-Methodology hsfclmap The package contains country-specific HS->FCL map and adjustments (aka notes) extracted from Jellyfish MDB files SWittouck tidyamplicons Functions to Manipulate and Visualize Amplicon Sequence Data SWotherspoon BAStag Basic data processing for British Antarctic Survey archival tags. SWotherspoon Combin8R Parser combinators for R SWotherspoon MVNSeq R Package for fitting Multivariate Normal hidden Markov and Mixture models SWotherspoon Marseille Support Functions for RAATD SWotherspoon Platt Modified Platt Photosynthesis-Irradiance Models SWotherspoon QPress Qualitative modellings of PRESS perturbations SWotherspoon RWalc Continuous time correlated random walk models for animal movement SWotherspoon SGAT Solar/Satellite Geolocation for Animal Tracking SWotherspoon bmixlm Binary Mixtures of Linear Models SWotherspoon nlsaux Support functions for nls Saadman SigNetA SachaEpskamp IsingSampler Sampling methods and distribution functions for the Ising model SachaEpskamp OSF2R Read files from OSF into R SachaEpskamp authGraph Package for creating co-author networks based on web of science input SachaEpskamp bootnet Bootstrap methods for various network estimation routines SachaEpskamp elasticIsing Ising model estimation via Elastic Net and k-fold crossvalidation SachaEpskamp graphicalVAR SachaEpskamp jmvNetworkAnalysis SachaEpskamp lisrelToR This is an unofficial package aimed at automating the import of LISREL output in R. This package or its maintainer is not in any way affiliated with the creators of LISREL and SSI, Inc. SachaEpskamp lvglasso SachaEpskamp lvnet Latent variable network models SachaEpskamp mlVAR SachaEpskamp multivar Latent VAR SachaEpskamp murmur MUltivaRiate MUlti-level Regression SachaEpskamp parSim Parallel simulator function for R SachaEpskamp polyCov R package to compute polychoric covariances in multiple groups. SachaEpskamp psynet Automatic network analysis of psychological data SachaEpskamp qgraph Developmental version of qgraph SachaEpskamp semPlot Path diagrams and visual analysis of various SEM packages' output SachaEpskamp staTeX R package to facilitate printing statistical results in Sweave SachaIZADI R-for-datascience-Package-Training SachaIZADI wifi-paris SachaIZADI wifiparis Sage-Bionetworks BCC Sage/DREAM Breast Cancer Challenge R Package Sage-Bionetworks CMSclassifier Sage-Bionetworks Hello-World Sage-Bionetworks PythonEmbedInR Based off of PythonInR (https://bitbucket.org/Floooo/pythoninr/) but includes a standalone, compiled from source python instead of relying on the python installed on the host machine Sage-Bionetworks Rsftp R package for sftp and other ssh-related functionality Sage-Bionetworks SageBionetworksCoex Compute gene coexpression based on gene expression data. Sage-Bionetworks bfrm Bayesian Factor Regression Model (BFRM) techniques from West group at Duke - wrappers written to integrate as an R package to call platform-specific executable. Sage-Bionetworks federationPLoSRevision Sage-Bionetworks knit2synapse Functionality to knit RMarkdown documents to Synapse wiki pages. Sage-Bionetworks mGenomics Sage-Bionetworks mPower-processing Data cleaning and feature extraction pipeline for mPower app Sage-Bionetworks mPowerProcessing Sage-Bionetworks mPowerStatistics An R package for the statistics used in mPower data processing Sage-Bionetworks metanetwork metanetwork Sage-Bionetworks mpowertools feature extraction toolkit for mPower modules Sage-Bionetworks pcbcStats Stats functions for PCBC analysis Sage-Bionetworks predictiveModeling Sage-Bionetworks rHDF5 Access HDF5 files from R. Based on a package originally authored by Roy Kuraisa, Wilson Lau and Jason Eglin at Merck & Co. that was donated to Sage Bionetworks. Sage-Bionetworks rSCR Sage Commons Repository Sage-Bionetworks rSynapseClient The R programmatic interface to Synapse services Sage-Bionetworks rSynapseClientRewrite The design of the R Synapse client is getting crusty and difficult to maintain. Let's overhaul it! Sage-Bionetworks rSynapseUtilities Utilities for use with the R Synapse Client Sage-Bionetworks sessionTools Store, load and teleport R sessions. Sage-Bionetworks snm Supervised Normalization of Microarrays (snm) Sage-Bionetworks sss Shotgun Stochastic Search (SSS) from Hans, Dobra and West (http://pubs.amstat.org/doi/abs/10.1198/016214507000000121) - wrappers written to integrate as an R package to call platform-specific executable. Sage-Bionetworks synapseCopyProject Copy a Synapse Project Sage-Bionetworks synapseUtilities Copy a Synapse Project Sage-Bionetworks synapseclient An R package providing programmatic access to Synapse Sage-Bionetworks synapser An R package providing programmatic access to Synapse SaiTheinThanTun ibmcraftr It provides a generic set of tools for initializing a synthetic population with each individual SamBuckberry Coursera_Statistical_Inference SamBuckberry RunATAC R package for processing and plotting ATAC-seq data SamBuckberry bioc_massiR Repository for the bioconductor package massiR SamBuckberry bioc_massiR-release Bioconductor Release version of the massiR package SamBuckberry massiR R package for predicting the sex of samples in microarray datasets SamBuckberry methylpy SamPassmore excdr A R package of useful functions for members of the excd lab (excd.org) at the University of Bristol Saman-Zahid R-lab7 Samantha-Lui EZRecords Samantha-Lui EZRecords.demo SamanthaRoseCoy task09 SanFranciscoFogg quandl-r SandaD MCMCEnsembleSampler SantanderMetGroup R_VALUE A set of R-based function for computing several climatic indices SantanderMetGroup downscaleR An R package for climate data bias correction and downscaling (part of the climate4R bundle) SantanderMetGroup downscaleR.java Java stuff on which other java-based packages depend SantanderMetGroup drought4R A drought assessment package of the climate4R bundle SantanderMetGroup ecomsUDG.Raccess R package for accesing the ECOMS User Data Gateway SantanderMetGroup loadeR An R package for climate data access (part of the climate4R bundle) SantanderMetGroup loadeR.2nc A loadeR extension for writing grids to netCDF SantanderMetGroup loadeR.ECOMS R Interface for ECOMS-UDG (seasonal forecast datasets) extending climate4R SantanderMetGroup loadeR.java SantanderMetGroup transformeR An R package for climate data post-processing (part of the climate4R bundle) SantanderMetGroup visualizeR R Package for Visualizing and Communicating Uncertainty in Seasonal Climate Prediction Santaris affinity the affinity package Santaris seqtools Santos-Parker BioAge Santos-Parker TestingTesting Santos-Parker junk junkety-junk Santos-Parker testing SaraZamillo descrittive Seconda prova di condivisione di un package SaraZamillo prova Una prova di condivisione di un package Sasikanth3 Qwertizer Sasikanth3 SparkTools Machine learning tools for RSpark , to make the environment easy to digest SatishDivakarla FarsPackage This package is created for R course on Building Packages Sbrunste CUSD Functions for Computations SchlossLab mothuR R package to work with output files from mothur SchroederFabian CVOC R Package including two univariate classifiers that take operating conditions into account. These can be used as a variable filter. Schuch666 EmissV Top-down methods to create vehicular emissions. Schw4rz glicko2 An Implementation of Glicko-2 for R SciViews SciViews SciViews (main package for SciViews::R additions) SciViews mlearning Machine learning with a standard formula-based interface SciViews svGUI Manage GUIs in R SciViews svMisc Miscellaneous functions for SciViews or general use SciViews svSocket SciViews R socket server SciViews svUnit Testing for SciViews: units, integration and system tests SciViews zooimage Plankton images analysis system Sea2Data Rstox SeaAroundUs rseaaroundus Access Sea Around Us catch data and view it as dataframes or stacked area charts SebKiesel RTutorKyotoandLeakage SebMerk RTutorInnoComp RTutor Problem Set SebastianS09 ClassPackage A package containing 5 functions written in class and their documentation SebastienMoeller Map-536-Homework-02 Second R Homework Assignment Seborinos AppDC Applications of distances between empirical characteristic functions Seborinos NCutYX NCutYX is an R package for clustering different types of genomic data. Sega314 16S_SNP_lib Selbosh ggChernoff R package for drawing Chernoff faces in ggplot2 Selbosh scrooge Custom R package with tools for David Selby's doctoral research SelectionPredisposed qqman2 SelimRaboudi PTEST SelimRaboudi RVWsystem SelimRaboudi Rvw SelimRaboudi Rvwabbit SelimRaboudi selimtools SelimRaboudi toolbox Personal toolbox of R functions SelimRaboudi wrangleR R functions for wrangling with data Selventa RDataInfrastructure R Data Infrastructure Senbee FLUSH_LVS_bundle FLUSH and LVS methods Senbee RcmdrPlugin.RDataXMan Senbee Sequgio Senbee mwt Senbee radiant.biostat Senbee radiant.unibs SensitiveQuestions endorse R endorse package for analyzing survey endorsement experiments SensitiveQuestions list R list package for analyzing list experiments, also known as the item count technique SensitiveQuestions rr R rr package for analyzing randomized response technique survey items SeoncheolPark qrandomForest quantile regression + random forests SergeMOULIN ROC_R SergeMOULIN case_study SergiiKozak DrumStatsRServer SergioRoethlisberger regression logistc regression and linear regression SergiySobolev histogrampackage SeungkiKwak Kwak_S_PhD_thesis SevillaR Andaclima R package to obtain climatic/meteorological data from Andalucia SevillaR HivepodR R package to connect to databases created with Hivepod SevillaR aemet R package to obtain climatic/meteorological data from AEMET SevillaR aire Paquete de R para analizar la calidad del aire en Andalucía ShadeWilson ihme An R package for making life at IHME a little easier. ShadowFiendSF TFCluster This library was used for eliminating redundant motif ShanEllis methylarking Package for RRBS data analysis (lab of Dan Arking) ShanEllis phenopredict Use gene expression to predict phenotype sample information SharonLutz CausalScreen Implements a screening step to increase power when testing for direct genetic effects of multiple SNPs in family based association studies using causal inference methodology. SharonLutz DisentangleSNP SharonLutz RNAseqRare Performs expression quantitative trait loci (eQTL) analyses of rare variants for RNA-seq data. SharonLutz SecondaryPhenotype Adjusts for ascertainment bias when testing for genetic associations of secondary phenotypes in population based studies. SharonLutz Umediation Examines how the results of the mediation analysis would change in the presence of unmeasured confounding. SharonLutz bayesIndirect Examines the indirect effect of a SNP on the outcome through the mediator in a Bayesian framework with a spike and slab prior. SharonLutz linkBayes Incorporates linkage data in genetic association studies. SharonLutz pleiotropy Tests for common and rare variant associations with multiple phenotypes using the Hausdorff metric in a permutation based framework. SharonLutz powerASEeQTL Runs power calculations for ASE and eQTL analyses for RNA-seq data. Sharonxiaoyuan eegc Engineering Evaluation by Gene Categorization (eegc) of Microarray and RNA-seq Data Sharpie RTikZDevice A R package for producing graphics output as PGF/TikZ code for use in TeX documents. Sharpie puppet-jmx ShaulAb typeless makes you type less ShawHahnLab microsat Analyze microsatellites in high-throughput sequencing datasets Sheffield-Accelerated-VoI SAVI-package ShenTongSharon R101_Repository ShenTongSharon R101d ShengLi Rutilities Utilities function in R ShengLi edmr Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis. Shians Glimma Glimma R package Shians Glimma-deprecated ShichenXie scorecard Scorecard Development ShichenXie woebin Shicheng-Guo Association Shicheng-Guo BiSearch Shicheng-Guo HelloMethylation Shicheng-Guo JSP Shicheng-Guo MouseMHB Shicheng-Guo R-project Shicheng-Guo Rscript Shicheng-Guo TissueSpecificAnalysis Shicheng-Guo collaboration Shicheng-Guo edmr Automatically exported from code.google.com/p/edmr Shicheng-Guo lyne Modeling DNA methylation dynamics with approaches from phylogenetics. Shicheng-Guo methclone Shicheng-Guo methyAnalysis Shicheng-Guo methylation ShinsukeSakai0321 FFS ShinsukeSakai0321 HL ShinsukeSakai0321 Helloworld10times ShinsukeSakai0321 LimitState ShinsukeSakai0321 PSFCalc ShirinG exprAnalysis exprAnalysis ShishirShakya roller ShishirShakya week4 ShixiangWang arrayConnector arrayConnector is a R package can combine multiple expression sets which represents by bioconductor ExpressionSet ShixiangWang chinaWeather learn develop R package ShixiangWang iProfile ShraddhaSurana VulpineCreations ShraddhaSurana evaluatingModel R package to calculate performance measures ShrimpScience bio.shrimp Shubham-Khanve skplot A test for GSOC 2016 under project 'Performance and Risk Visualizations'. Shubham-Khanve xtsPerAnl Test for GSOC 2016 under project 'Performance and Risk Visualizations'. Shubham-Khanve xtsPerAnl_old Another test for GSOC 2016 under project 'Performance and Risk Visualizations'. SiBorg7 Damm Damm Algorithm Check Digit Implementation in R Sibada XAJ Xinanjiang hydrological model for R Sibada scPDSI An R package to calculate scPDSI Sibada sibadaR Sibada's accumulated R scripts for next probably use to avoid reinventing SigmaMonstR digIt A simple wrapper to dig into new example datasets for data science and statistics. SigneMJensen bmd bmd SigneMJensen mmmVcov SilentSpringInstitute RNHANES R package for accessing and analyzing CDC NHANES data SilentSpringInstitute RStateCancerProfiles R package for accessing State Cancer Profiles data SilentSpringInstitute springr common functions used by Silent Spring-ers Siliegia galoislattice A R package to create and analyze Galois lattices for two-mode networks SiminaB MultiMed SiminaB MultiMed-devel Development version of MVMA package Simkova CharFun SimmonsBI bmotif bmotif Simon-Coetzee Bioc2017 Simon-Coetzee StatePaintR Simon-Coetzee footprintR No description or website provided. Simon-Coetzee funcivar Simon-Coetzee motifBreakR A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites. SimonDedman gbm.auto Machine-learning Boosted Regression Tree software suite for species distribution modelling in R SimonFans RP Regarding to build package SimonGoring pb210dating A repository for a CRAN package in development. SimonJonsson lab3 SimonJonsson lab4 SimonJonsson lab5 SimonJonsson lab5shiny SimonJonsson lab6 SimonJonsson lab7 SimonRaper buster R package for bagging hierarchical clustering SimonSchafferer CLIHelperPackage SimonSchafferer ClassSplitMergeHelper SimonSchafferer MirWalkUtility Retrieval of data from the mirwalk2 website within R SimonSchafferer RNASeqUtility SimonSchafferer Utilities just various utility methods SimonSchafferer custom-neuro-ncRNA-microarray SimonSchafferer short-ncrna-annotation Ranges based and sequence based ncRNA annotation in R SimonStuber txtnet SimonYansenZhao wskm An R package for weighted k-means clustering that will replace weightedKmeans SimonYansenZhao wsrf wsrf: Weighted Subspace Random Forest for Classification SimoneHermann BaPreStoPro SimoneHermann hierRegSDE SimpleITK SimpleITKRInstaller Devtools based installer for SimpleITK R installer. Simularia simulariatools Tools to pre and post process data for air quality assessment SinanGabel testROCPU Testing ROCPU SiruoWang Fibo SiruoWang srametadata SiruoWang srametasex Siruphuhn testpack No description or website provided. Sitra-Isaacus VSSHP-synthetic-data An R package to generate synthetic data with empirical probability distributions. SixiangHu DataMan R Packages For Data Manipulation and Preliminary anlysis SixiangHu circleD3 D3 Plot for R SkBlaz ProBiSparseR Simple R library for parsing .lig files. SkBlaz x78-asdhjl Skhakmardan MHiC MHiC: Tool for identifying the significant interactions in Hi-C data from different normalization tools. Skjemaa GA Slanman3755 networkD3 SmaragdaT GenEpiSim SmaragdaT rpackage testing R package for GitHub SmarshMELLOW financeSMM Create mean-variance efficient portfolios SmarshMELLOW ubeRpay Read PDF pay stubs and create income statements SmartDataAnalytics ECoL Extended Complexity Library in R SmithCollege-SDS sds templates and things for SDS Smudgerville SmudgeR A Personal R Package Smudgerville dRby Louisville, KY Open Data Tools Smudgerville govnR Smudgerville janitoR Data tidying and cleanup tools SocialFunction youTubeDataR Integrates R and the YouTube Data API SoerenPannier emdi emdi: estimating and mapping regionally disaggregated indicators SoerenPannier myHPCtools SofanitAraya CropPheno Crop Phenology from time series vegetaion indiex images SofanitAraya CropPhenology SofanitAraya OldCropP Extract phenologic parameters from time series vegetaion indiex images SofiAraya CropPheno Watch SofieVG FlowSOM Using self-organizing maps for visualization and interpretation of cytometry data SoftengPoliTo powtran POWer TRace ANalyzer SoftwareAG pmmlExtensionr Generate PMML for R models which are not supported by the standard pmml package SolomonMg HetSL SolomonMg ImageMetrics R package to facilitate the analysis of image dat Solymi90 Fars.Assignment Solymi90 r.prog.capstone R Programming Capstone Project Somenath24 TransP This package implementation of famous Transportation Problem Algorithm : North West Corner and Minimum Cost Somtom somtomlib Sonal28 prfasonalv Project: Programming in R Sondre91 STGARCH Work in progress: R-package for simulation and estimation of STGARCH processes SonmezOzan fChange_0.2.0 R package for change point analysis in functional data SonmezOzan mc_1.0.3 A new package that performs various calculations on Markov Chains SonmezOzan mmfit R package will estimate parameters using the Method of Moments, using the gmm package for computation SooLee plotosaurus SophiaJia Jsurvformat SophiaJia Jsurvformat1.2 updated digt method backup SophiaJia NCDBR Makes National Cancer Database (NCDB) R binaries SophieHarbisher PKstudy SophieHarbisher RDPmodel Optimal Design for the model as described in Fully Bayesian Experimental Design for Pharmacokinetic Studies SophieHarbisher ToyExample Optimal design for y=A*exp(-B*|t|) + err. Used to investigate proposal distributions when we have little prior knowledge. Sorenson-Impact sorensonimpact Sorenson Impact Package Spatial-R EnvExpInd This is the repository to assess the environmental exposure on individual level. Spatial-R IDDC Gather the level 2 dataset from tycho project: https://www.tycho.pitt.edu/index.php Spgadou LCMC Life contingencies with Markov chains Spgadou TP Spgadou nCopula Hierarchical Archimedean Copulas Through Multivariate Compound Distributions Spgadou nCopula2 Copula derivatives SpitzerLab statisticalScaffold Spoted21 tt Spreads R R package for Spreads Spreads Slang SpyrosBalafas mudfold SquamataBase RSquamataBase SriramNY xplore Testing SrivastavaLab bwgdata A simple package to access our (currently private) API for the bromelaid working group database SrivastavaLab bwgtools This is an R package that validates data and reproduces all analyses for the bromeliad working group rainfall experiment. SrivastavaLab cesabfunctionalwebsdata Data cleaning and organization for CESAB FUNCTIONALWEBS papers SrivastavaLab fwdata small, lightweight package for accessing BWG data for the CESAB FUNCTIONALWEBS projects Stan125 GREA Gotta Read Em All: RStudio Add-In to interactively read ALL the data into R Stan125 bamlss.vis Framework for the visualization of R objects fitted with bamlss R package Stan125 ghp An R package for general hierarchical partitioning, a method to measure the influence of variables on a goodness-of-fit Stan125 limoaddin An Add-In for RStudio to create a histogram Stanford-ChEMH-MCAC parse_agilent Tools for parsing the .csv data exported from Agilent's MassHunter software StanfordBioinformatics SCDEcode StanfordBioinformatics loomengine-portal StanfordBioinformatics loomengine-worker StanleyXu egquery eQTL-geneset query with ordered regions StanleyXu loci2path eQTL-geneset query with ordered regions Stat-Li SDAMS StatGent RiskStandard R-package containing statistical methods for benchmarking clinical care centers based on a binary quality indicator StateSpaceModels ssminr R interface to SSM Statgnome commuteconvergence Commute Analysis via Googlesheets in R StatisticalServicesCentre ClimateObject This R code StatisticsNZ classconc Data structures and functions for concordances between classifications. StatisticsNZ dembase Data structures and functions for demographic data. StatisticsNZ demdata Demographic datasets. StatisticsNZ demest Bayesian demographic estimation and forecasting. StatisticsNZ demlife Tools for creating life tables and extracting life table functions. StatsResearch RobsRUtils Handy R utils I have come across or coded up myself StatsWithR statsr Companion package for the Coursera Statistics with R specialization SteeleCD CNomplexity Package for investigating complex copy number changes and structural variants SteeleCD METHods Various functions and methods for analysis of methylation arrays SteeleCD steeleLib R library with useful functions for methylation analysis Steensson branchekoder A conversion table for Danish sector codes. The conversion table contains five levels. Level 0 is the highest sector level in Denmark and level 4 is the lowest (most detailed). Steensson gendeR Determine the gender of a first name (a wrapper of the API provided by genderize.io) Steensson timeulaR A wrapper for the Timeular public API Steensson valhalla Just a package containing a lot of helper functions StefanReuscher ABHgenotypeR The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes SteffenMoritz imputeTS CRAN R Package: Time Series Missing Value Imputation SteffenMoritz ridge CRAN R Package: Ridge Regression with automatic selection of the penalty parameter Steph-Fulda PLMScoRe R package for deriving PLMS indices from leg movement information according to the newest WASM 2016 rules StephenHolzman COCLIBRARY R/ggplot2 chart library for chartsoncharts.com StephenHolzman Lambda-Utility-Functions SteveLane ageFit Package to investigate the different age proportion distributions for Australia over the past 40-odd years. SteveLane elicitatoR Aggregation of Distributions from Expert Elicitation SteveLane europhytR A package to download and extract data from EU pest interceptions. StevenVB12 patternize An R package for quantifying color pattern variation StevisonLab genotypeR This contains the genotypeR R package Stevo15025 FRaC Repository for package anomaly detection Stevo15025 PANICr PANIC Tests StoreyLab biobroom Tidy up computational biology objects StoreyLab bnpsd R package to model and simulate admixed populations StoreyLab edge R package for identifying differentially expressed genes from genome-wide gene expression profiling studies. StoreyLab eigenR2 StoreyLab factorial-MA-RS Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey StoreyLab gcat This package has been renamed gcatest: https://github.com/StoreyLab/gcatest StoreyLab gcatest genotype conditional association test StoreyLab lfa logistic factor analysis StoreyLab popkin R package to estimate kinship and FST from SNP data StoreyLab qvalue R package to estimate q-values and false discovery rate quantities. StoreyLab subSeq Subsampling of high-throughput sequencing count data StoreyLab trigger-devel Struglab RVS Robust variant test Struya mtrostR R package for Building R packages course SuLab biothings.registry SuLab drugrepos SuLab mygene.R A R Bioconductor package for accessing MyGene.info services SuLab myvariant.R R client for MyVariant.info web services SubhasreeBose RSentiment SuneelChatla cmp R Package for Conway-Maxwell Poisson Regression and Additive Model SuperMayo R.nomics An R package that talks to DBnomics SurfClam bio.surfclam SusanYuan Cplusplus SusanYuan Difdtl Sustainabilist qualitytools An R package for quality assessment, control, and improvement SvenLehmann OpenCpuRDemo SvenjaFischer Disagg R-Package for disaggregation of daily mean discharges SvetlanaEden SNOWFLAKES Swarchal CProcessR R package for cleaning up CellProfiler data Swarchal Smisc Misc R functions Swarchal TCCS Swarchal TISS Titration invariant similarity score (TISS) Swarchal charDirection Characteristic Direction - Ma'ayan Lab Swarchal focus R package to detect and remove low-quality image data Swarchal fridayDemo Demonstration Swarchal phenoDist Distance and similarity metrics used in phenotypic screens Swarchal phenoScreen An R package for working with phenotypic screening data Swarchal platetools An R package for plotting 96 / 384 / 1536 well plates Swarthmore-Statistics mase SwissTPH CrossVA SwissTPH xva SyedAkbarAhmad AllSigTest Uni-variate and Bi-variate analysis of data SymbolixAU SymbolixAU.github.io SymbolixAU extend.data.table SymbolixAU googlePolylines R package for encoding objects using Google's Polyline Encoding Algorithm SymbolixAU googleway R Package for accessing and plotting Google Maps SymbolixAU gtfsway SymbolixAU mongodt SymbolixAU mongolite_pipeline helper functions for mongolite to generate aggregation pipeline queries SymbolixAU mongolite_test SymbolixAU mongolitedt SymbolixAU myWidgetHTML SymbolixAU rtrello SymbolixAU spatial.data.table Convenience functions for doing spatial calculations on data.tables SymbolixAU spatialdatatable SymbolixAU vizicitiesway R implementation of vizicities https://github.com/UDST/vizicities SymbolixAU windingnumber A test package for the winding number algorithm SysteMHC RnetMHC R package for filtering and visualizing netMHC output SystemsGenetics KINC.R Supplemental R package for KINC Sz-Tim giftR An R package to assign & notify participants in a secret santa gift exchange Sz-Tim sevcheck An R package of homemade functions I use a lot. T-S-Brown ttools A collection of personal R functions TBradley27 MultiECDFPlot R package to write multiple empirical cumulative distribution functions (ECDFs) onto the same plot TEST-BNL R-Canopy_Photosynthesis Testbed for canopy scaling and modeling of Photosynthesis and GPP TGAC Mulea TGuillerme Inapp Inapplicable GUI algorithm TGuillerme dispRity Measuring disparity with R TGuillerme mulTree Performs MCMCglmm on multiple phylogenetic trees TGuillermeTeaching fakeR TJGorrie IlluminaHumanMethylationManifestShiny Shiny App for viewing the IlluminaHumanMethylation Manifest TJGorrie IlluminaManifestShiny Shiny App for viewing the IlluminaManifest TJGorrie bigmelon DNA methylation analyses in high dimensions TJGorrie cRawler complete R adventure with lovable* endless recreation TJetka TJfunctionsR set of auxiliary R functions TJetka TJplotsR auxiliary plots functions (R) TKoscik eegr EEG Analysis Tools for R TKoscik fsurfR Utilities for Freesurfer MGH I/O TKoscik mRi fMRI analysis tools TKoscik tk.r.misc TKoscik's Miscellaneous R Functions TNO PhenotypeDatabase-RClient R client to connect to GSCF TNO PhenotypeDatabase-RUtils R-scripts with utility functions for GSCF TPeschel helpR some helper for postgraduates TPeschel hlpr4life R-Scripts for making life easier TR-API-Samples Article.TRTH.R.TRTHinR Created by Platform Services GitHub tool on Thu May 04 2017 TReynkens ReIns Functions from the book "Reinsurance: Actuarial and Statistical Aspects" TReynkens rospca Robust Sparse PCA using the ROSPCA algorithm of Hubert et al. (2016) TS404 AlignStat A tool for the statistical comparison of alternative multiple sequence alignments TS404 AlikeAlignmentAligner A tool for the comparison of alternative alignments of the same sequences TS404 DefSpace A Shiny Rstudio application for exploring defensin sequence space TSadhu AppadaInit TSadhu Peer_Assesment TTYE CoSync-TestVersion R package for Co-Synchronization network analysis of pseudo-temporally ordered single cell data Taarnborg eliteR Taarnborg misc miscellaneous functions TaddyLab distrom Distributed Multinomial Regression TaddyLab gamlr Gamma lasso regression TaddyLab maptpx map estimation of topic models TaddyLab textir Inverse regression analysis of text TaiBON dwchelpeR GBIF Darwin Core Assistant TaipeiRHackers DataTaipei R Client for http://data.taipei/ TakahiroShimada SDLfilter An R package to filter GPS and/or Argos locations TakahiroYamane lrem TambourineMan88 bballR Scrape basketball data from basketball-reference.com Tangjiahui26 foofactors Hw09 For STAT547M TanmayiN Prob-Test2 TaoussD EbEEMGARCH R package to estimate MGARCH(1,1) model equation by equation Tape09 LSP TarekHattab iSDM iSDM is an open-source R package that implements a few functions useful for modeling the spatial distribution of invasive species TarsoRodriguez fars Assignment week 4 - Mastering Software Development in R Course on Coursera TasCL cpda Probability Density Approximation TasCL ggdmc DMC with Parallel Computation and C++ Capabilities Tasu EpDB2UG EupathDB2UGENE Tatvic RGoogleAnalytics R Library to easily extract data from the Google Analytics API into R Tatvic RGoogleAnalyticsPremium Unsampled Data in R for Google Analytics Premium Accounts TaylorAndrew atAnalyze Iterate analyses into clean data.frame output TaylorAndrew atClean Various functions for cleaning data TaylorAndrew atExplore Functions for exploring data TaylorAndrew atImport Functions for importing packages and data, and dealing with imported data TaylorAndrew atMisc Miscellaneous R Functions TaylorAndrew atPlot Various functions for plotting data TaylorAndrew atPlotAddins Rstudio Addins for Exploratory Visualization TaylorAndrew atPostAnalyze Functions for post-hoc analysis: pairwise comparisons, pvalues, etc TaylorAndrew atPrepAnalyze Helpful functions for checking distributions and assumptions. Provides output useful for atAnalyze. TaylorAndrew atProjectManage Functions for managing projects and consistent commenting in code TaylorAndrew atProjectManageAddins Rstudio Addins for Managing Projects: Creating New Directories and Inserting Helpful Comments TaylorAndrew tidyCycleR R package that works with cycling data. Under development currently Tazinho snakecase 🐍🐍🐍 A systematic approach to parse strings and automate the conversion to snake_case, upperCamelCase or any other case. Tazinho timedim Tidy R package for the creation and wrangling of dense time dimensions Tazovsky utilities TeamMacLean atacr Analysing Capture Seq Count Data Teamwork4R Teamwork4R Teichlab cellity TenanATC gas.sim This is the public repo for the gas.sim R package to determine if two gas exchange measures exceed measurement error Texas-UCF quantkit R Package for quantitative analysis in financial markets Tezzzcatlipoca leeMM Tezzzcatlipoca leeSMS ThChauvin MicrodensiteR Package for microdensity studies ThVWh ralibr Thakar-Lab FUNNEL-GSEA-R-Package Thdegraaff SpatFrontier Development of package and paper for Spatial Frontier Thdegraaff regrobustsim regrobustsim simulate regression analyses by varying number of dependent variables Thdegraaff sortingmod TheAn4rch1st MachineLearneR TheDataLabScotland simdr calculating the Scottish Index of Multiple Deprivation TheGilt immunespace_theme Allows ggplot generated plots to share the same theme elements as ImmuneSpace plots. TheGreatGospel FemFit TheGreatGospel IVPSA TheJacksonLaboratory ncells Calculating the number of cells in single cell RNA-seq experiments TheLondonPeacock SeaClass An Interactive R Tool for Classification Problems TheProfitTable loanportr Loan portfolio analysis with R TheScientistBr zipf Zipf law text classification TheeBeerus R_ACP Thell PluginGperf Google Performance Tools helper plugin for Rcpp's sourceCpp Thell RcppMP Rcpp multi-precision types glue. Thell Rcppnanoflann Example of using nanoflann and rcpp for a fast custom nearest neighbor index function in R. Thell ccloutline R matrix connected component outlines. Thell knitLiteral Output knitr chunks for training and tutorials. Thell knitr-yaml-example rmarkdown example using yaml to set knitr opts and hooks Then-Terence LiteXploreR R package {LiteXploreR} TheoMichelot moveHMM R package - Animal movement modelling using hidden Markov models TheoreticalEcosystemEcology alien Predict All Links In Ecological Networks TheoreticalEcosystemEcology alienR Predict All Links In Ecological Networks TheoreticalEcosystemEcology rcoleo R client of the coleo web API ThiagoInocencio TransparenciaFederal Webscraper feito em R que realiza consultas de informações do portal Transparência Federal e gera análises dos dados obtidos. ThibaudCoroller CIBL_GF R package for General function for radiomics analysis Thie1e IFC-scraper A scraper for fetching project information from the IFC's database Thie1e convenience A small package of diverse functions for more convenient working in R (and my sandbox) Thie1e cutpointr An R package for determining and validating optimal cutpoints in binary classification Thie1e fars Thie1e subsetcor ThierryO INBOtheme A collection of ggplot2 themes ThierryO bookdowntest ThierryO corpident Many companies require that every output is based on a corporate identity. This package demonstrates how to create a corporate identity style for posters in LaTeX, reports in Markdown and slides in Markdown. ThierryO grts ThierryO multimput No description or website provided. ThierryO rhinolophus Extract bat sounds from wav files, calculate metrics on those sounds and try to identify the species. ThierryO testS4 ThierryO testlme4 ThierryO testvirtualclass ThierryO utf8vignette A minimal workings example of a R package with Markdown vignette with UTF8 encoding ThilakshaSilva densityEst This is my R package and it estimates a time series of density functions using logspline approach. ThilakshaSilva myRpackage My first R package ThinkR-open ThinkR some stuff ThinkR-open fcuk A R package designed to help people with clumsy fingers. ThinkR-open legislatives2017 Résultat des elections legislatives 2017 ThinkR-open littleboxes Rstudio Addin - create boxed title in an Rscript ThinkR-open prenoms French Baby Names 1900-2015 ThinkR-open prompt Dynamic prompt ThinkR-open remedy RStudio Addins to Simplify Markdown Writing ThinkR-open seven31 R :package: for R FAQ 7.31 ThinkR-open shopping Rprof & profvis usage demonstration ThinkR-open spongecake Transform a Movie into a Synthetic Picture. ThinkR-open tetraclasse Satisfaction analysis - LLosa matrix - Tetraclasse model ThinkR-open tidyxts tidy manipulation on xts object ThinkR-open togglr an R and Rstudio wrapper for toggl Api ThinkR-open uni unicode tibble ThinkR-open utf8splain Explain utf-8 encoded strings ThinkR-open ztype How fast can you type R functions on your keyboard ? ThinkRstat ThinkR some stuff ThinkRstat collage Image collage ThinkRstat fa font awesome R tools ThinkRstat fcuk A R package designed to help people with clumsy fingers. ThinkRstat legislatives2017 Résultat des elections legislatives 2017 ThinkRstat littleboxes Rstudio Addin - create boxed title in an Rscript ThinkRstat prenoms French Baby Names 1900-2015 ThinkRstat prompt Dynamic prompt ThinkRstat r2048 the 2048 game ThinkRstat seven31 R :package: for R FAQ 7.31 ThinkRstat shopping Rprof & profvis usage demonstration ThinkRstat spongecake Transform a Movie into a Synthetic Picture. ThinkRstat stopwords stop words in several languages ThinkRstat tagsinput Bootstrap tags input for shiny ThinkRstat tetraclasse Satisfaction analysis - LLosa matrix - Tetraclasse model ThinkRstat tipixel pixelize images ThinkRstat togglr an R and Rstudio wrapper for toggl Api ThinkRstat tweetstorm tweetstorm ThinkRstat uni unicode tibble ThinkRstat utf8splain Explain utf-8 encoded strings ThinkRstat ztype How fast can you type R functions on your keyboard ? ThoDah RabbiTS R package for Time Series Analyisis of Spatial Data ThoDuyNguyen fars ThomasCarroll basecallQC Tools for working Illumina basecalling and demultiplexing software, bcl2Fastq ThomasChln mastodon R based Mastodon client ThomasChln snpclust Single nucleotide polymorphism unsupervised clustering ThomasSiegmund D3TableFilter A table widget based on Max Guglielmi's "HTML Table Filter Generator" and D3.js ThomasSiegmund shinyTypeahead A typeahead text input for Shiny based on the Bootstrap2 typeahead plugin ThomasTaus omnibus Test the global null hypothesis ThomasTaus poolSeq Analyze and simulate Pool-Seq time series data ThomasWilli politantheme ThreadNet ThreadNet ThreadNet weaves threads into networks Thyra biopeter Association Rules for regex patterns in amino acid sequences TiO2 rpackage My R package TiagoVentura GetIRdata GetIRdata: Download and Merge data commonly used in the International Relations research Tieming A-Bayesian-hidden-Markov-model-for-detecting-DMRs Tieming hmmDMR-package A Bayesian hidden Markov model for finding differentially methylated regions (DMRs). TifMoe RZendesk Wrapper function to access Zendesk API through R in a consistent way. Current functions include getting ticket from Zendesk and posting new ticket to Zendesk TillF ppso Tim-Yu rgcd Tim113 ShinyBasicAuth Tim113 ShinyBasticAuth Tim113 shinyauth Adds authorisation to a shinydashboard, it's not that complicated. TimKDJ JASPTools Time-Gnome RCrypto R implementation of the coinbase api TimeWz667 SimHE A simulation tool for health evaluation modelling TimoBremer R_Strat stratifying archaeological features TimothyHyndman deconvolve R package for non-parametric deconvolution on measurement error problems. TimothyKBook catcorr A package for computing correlation-type statistics and matrices for categorical variables. TimothyKBook krr A package for the seldom-used kernel ridge regression. TimothyKBook rputexcel Wrapper for the RStata package to emulate Stata's "putexcel" command. TimothyKBook rutilstb Some quick, simple, easy R functions some may find useful. TimothyWillard timsrutils A package of some of my useful R utilities TinIndium farrs Demo for Coursera Course 'Bulding R Packages' TinyOpen OnGoing some functions TinyOpen boclust A clustering method based on boosting on single attribute TiphaineCMartin coMET coMET (fork Bioconductor) TiphaineCMartin coMET_original The coMET package is a web-based plotting tool and R-based package to visualize different genome-wide association scans such as EWAS (epigenome-wide association scan) results in a genomic region of interest. coMET provides a plot of the EWAS association signal and visualisation of the methylation correlation between CpG sites (co-methylation). T… TizVic BuildingAnRPackage Course Building an R Package - Assignment week 4 TobCap demagrittr kind of precompiling from magrittr's syntax to eager evaluation syntax TobCap lambdass lambda syntax-sugar in R TobCap lazystreamr Emulate lazy stream. This can handle infinite sequense TobCap matchwith pattern matching for R TobCap walkast walk an Abstract Syntax Tree of R Tobias-Ruff relectro_bak Backup of old relectro repository TobiasHerr tensorflow-r-fork TobiasRoth BDM R package with function to analyse the data from Swiss biodiversity monitoring programs TobiasRoth detecfilter TobiasRoth detectionfilter This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution. TobiasRoth macrobent R package to analyse Makrozoobenthos data, e.g. calculate biological indicators such as IBCH or SPEAR based on recorded species. TobiasRoth tr Some useful stuff Tobuchi helloworld10times say hello ten times TodC314 MBatch TodC314 MBatchExamples Tokazama iClass Primarily for the purpose of testing large amounts of code without having to recompile ANTsR everytime. Tom-Laetsch Rtwit TomHarrop abbottr TomHarrop argparsR TomHarrop oryzr oryzr TomHarrop rutils TomKellyGenetics R2LaTeX TomKellyGenetics graphsim R package: Simulate Expression data from iGraph network using mvtnorm (multivariate normal). TomKellyGenetics heatmap.2x Enhancements to Heatmap.2 from the gplots R package TomKellyGenetics igraph.extensions R package: Metapackage for iGraph Extensions TomKellyGenetics info.centrality R package: Extensions to iGraph for Information Centrality TomKellyGenetics pathway.structure.permutation R package: Extensions to iGraph for Pathway Structure TomKellyGenetics plot.igraph R package: Extensions to iGraph for Custom Plots TomKellyGenetics slipt Synthetic Lethal Prediction Tool (R package) TomKellyGenetics vioplotx A enhanced version of the vioplot R package TomMayo M3Ddevel development package for M3D TomMayo kmermods TomNash NASHMAP Normalization, ???, SAM, Heatmap, Microarray Analysis Pipeline TomNash PIMENTo Pipeline for Integrated Microarray Expression, Normalization Toolkit TomNash deseqHeatmap R package for visualizing and normalizing DESeq sequencing data TomNash illuminaPipeline Pipeline for analysis of Illumina microarray data TomNash sequencingHeatmap R package for visualizing and normalizing RNA sequencing data Tomas19840823 transportas_v2 Description TomaszKoska RUtils TomfromWales tomsTools tomsTools : Predictive Modelling R Tools Tomhigg TamsatTools Download and process TAMSAT rainfall estimates Tomhigg fracCover Fractional Cover Modelling using (mainly) Landsat Tomhigg zebu Remote sensing and other bits TommyJones LDA_Zipf TommyJones classifieR Functions to aid classification and regression TommyJones maRginaleffects TommyJones textmineR An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models. Tommytronic Metrics-mockup Tommytronic Scatter-R ToonVanDaele CommEnquete Verwerking van de resultaten van de interne INBO communicatie-enquete ToonVanDaele metapop ToonVanDaele test ToowoombaTrio BOMRang Fetch Australian Government Bureau of Meteorology Data ToowoombaTrio John_Conner The ToowoombaTrio's GovHack 2016 entry ToowoombaTrio WINS WINS - a crop stress Weather INformation delivery System in R ToowoombaTrio bomrang Fetch Australian Government Bureau of Meteorology Data using R Torvaney ggsoccer Plot soccer event data in R/ggplot2 ToshihiroIguchi CascadeModel ToshihiroIguchi PackageTest ToshihiroIguchi autocor ToshihiroIguchi calcor Automatic judgment of ordinal scale and nominal scale and calculation of p-value from association. ToshihiroIguchi dr Dimensionality reduction ToshihiroIguchi elasticnet Elastic Net, Lasso and Ridge models can be analyzed by the formula format. ToshihiroIguchi ensemble Ensemble model ToshihiroIguchi gaglm Automatic selection of explanatory variable of multiple regression analysis by genetic algorithm ToshihiroIguchi pboptim Population Based Optimization ToshihiroIguchi qatsp Quantum annealing for traveling salesman problem ToxStrategies UCMR3 ToxStrategies biteR biteR 0.1.3 TraME-Project Rglpk Fork of the CRAN 'Rglpk' package TraME-Project TraME A toolbox for solving problems of equilibrium computation and identification in discrete choice and matching problems. TraME-Project TraME-Classic Classic (R) version of the TraME Library TraME-Project TraME-R Classic (R) version of the TraME Library Trackage WCtag Trackage raatams AATAMS track data for R from IMOS Trackage rgos Tools for Argos Trackage splat splat to replace SGAT::Pimage Trackage tripdata Tracking data from R packages Trento-R-User-Group RPackageTemplate This is a first draft for an R package template. Trento-R-User-Group RUTrentoOpenData Query dati.trentino directly from R! Triamus mandat mandat TrigonometricDistribution CosW TrigonometricDistribution SecKW TrigonometricDistribution SinIW An R package to work with the Sine Inverse Weibull distribution. TrigonometricDistribution TanB Trinity-Automata-Research dsmodels The dsmodels domain-specific-language for visualizing dynamical systems in R. TripleSunny SunnyFirstRPackage Sunny's first R package TrungLeVn OptSK This package is to create the option implied moments and realized skewness TrungLeVn OptSk2 TrungLeVn SgtAcd TrungLeVn acdR TsuPeiChiu DNAshapeR R package for high-throughput DNA shape predictions and feature encoding Tsunamical28 mdpr R Package for Project MDP TuCai phuse TuCai phuseR TunChiehHsu SNscan R package SNscan TunChiehHsu SNscan_test Tutuchan chartjs An implementation of the Chart.js library in R Tutuchan fodr An R package to access French Open Data portals Tutuchan gettext Tutuchan gettextpo Tutuchan lolapi Tutuchan morrisjs An interface to the morris.js charting library. Tutuchan rdocker Tutuchan rhotslogs An interface to the HotsLogs API Tutuchan widgetexample TwoLittle fccc correlation for functional data Tychobra tychobratools some of our frequently used customizations for R projects TylerBackman BicBin Biclustering sparse binary data in parallel TylerBackman bioassayR Cross-target analysis of small molecule bioactivity TylerBackman bioassayR-git-svn-bridge This is defunct, now replaced with https://github.com/TylerBackman/bioassayR TysonStanley MarginalMediation R package that provides functions to perform and interpret marginal mediation analysis. TysonStanley anteo Tools for researchers using random forests to explore their data (also includes nice ggplot2 themes) TysonStanley furniture The furniture R package contains functions particularly helpful for researchers in health, behavioral, and social sciences, including table1 for simple and stratified descriptive statistics. UBOdin EttuBench A SQL Query Similarity Metric Benchmark UCANR-IGIS droneimg Map and analyze images taken from a drone UCCC CHORDS-QA QA packages for CHORDS VDW UCLSPP datasets Datasets UCLSPP sppsetup UCLSPP Setup Courseware UCSF-MSLAB msbwaiter R package for interacting with the msbioscreen API. UK-Digital-Heart-Project mutools3D R package for Mass Univariate Analysis of 3D Phenotypes UKGov-Data-Science govstyle Theme for use with ggplot2 for creating government style visualisations UMCUGenetics MutationalPatterns R package for extracting and visualizing mutational patterns in base substitution catalogues UMDBPP BalloonDataAnalysis R package for analyzing and visualizing balloon data UMMS-Biocore crisprseekplus Interface for crisprseek UMMS-Biocore debrowser Differential Expression Analysis Toolbox UMN-BarleyOatSilphium GSSimTPUpdate An R package with code and data to run simulations evaluating methods of updating training data UNFAOstatistics faodoc UNFAOstatistics gisfao Food and Agriculture Organisation of the United Nations (FAO) GIS R tools USCCANA diffusiontest Watch USCCANA fctc Framework Convention on Tobacco Control Data USCCANA netdiffuseR netdiffuseR: Network Analysis for Diffusion of Innovations USCCANA readnet USCCANA socnet Web Scraping The Social Networks (SOCNET) Listserv USCbiostats LUCid Latent and Unknown Cluster Analysis using Integrated Data USCbiostats amcmc Adaptive and other Markov Chain Monte Carlo methods USCbiostats aphylo Statistical inference of genetic functions in phylogenetic trees USCbiostats partition USCbiostats phylogenetic Statistical inference of genetic functions in phylogenetic trees USCbiostats polygons USCbiostats rphyloxml Read and write phyloXML files in R USEPA CityWaterBalance USEPA CompTox-ExpoCast-httk USEPA CoralBCG USEPA LakeTrophicModelling ORD LakeTrophicModelling USEPA Microcystinchla USEPA R-Training USEPA R-micromap-package-development ORD for R micromap package development USEPA elevatr USEPA goatscape USEPA lakemorpho ORD lakemorpho USEPA micromap ORD for R micromap package development USEPA quickmapr USGS-CIDA nar_data Data for the NAWQA Annual Reporting application USGS-R AWUDS No description or website provided. USGS-R CSI Import timeseries in various formats; interpolate missing data; calculate CSI and related metrics; output CSV and graphical representations. USGS-R DVstats USGS-R EGRET An R-package for the analysis of long-term changes in water quality and streamflow, including the water-quality method Weighted Regressions on Time, Discharge, and Season (WRTDS) USGS-R EGRETci A bootstrap method for estimating uncertainty of water quality trends USGS-R EGRETextra USGS-R EflowStats Calculates Hydrologic Indicator stats and fundamental properties of daily streamflow for a given set of data USGS-R GDopp A set of tools to process Acoustic Doppler Velocimeter data into estimates of the gas transfer velocity (k). USGS-R GLRItcl USGS-R GSqwsr Collection of functions to simplify data retrieval, model creation, and model analysis of censored surrogate regressions. USGS-R GcClust Package for statistical clustering of regional geochemical data, and similar data such as regional mineralogical data USGS-R HUCAgg HUC aggregator USGS-R MapMark4 Probability calculations in three-part mineral resource assessments USGS-R NWCCompare A collection of hydrologic model comparison functions. USGS-R RSurvey Geographic Information System Application USGS-R Rainmaker Instantaneous rainfall data processing for defining event periods, determination of antecedent rainfall conditions and X-hr intensities. Provides graphical display of instantaneous rainfall with event periods and hydrographs. USGS-R SampleSplitting package for use in splitting flow-weighted samples USGS-R USGSHydroOpt Tools for hydrologic optical analysis USGS-R USGSHydroTools Compilation of tools to aid in hydrologic and water quality analysis. USGS-R WQ-Review Toolbox for discrete water-quality data review and exploration. USGS-R WREG Develops regional estimation equations for streamflow characteristics that can be applied at a ungaged basins. USGS-R dataRetrieval This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services USGS-R geoknife R tools for geo-web processing of gridded data via the Geo Data Portal. geoknife slices up gridded data according to overlap with irregular features, such as watersheds, lakes, points, etc. USGS-R glmtools Tools for interacting with the General Lake Model (GLM) in R USGS-R grantools Tools for the Geological survey R Archive Network USGS-R gsIntroR Introduction material for USGS-R water users. USGS-R gsplot plotting foundation for timeseries reporting USGS-R hazardItems Services for creating coastal change hazards items for the USGS Coastal Change Hazards Portal USGS-R htcTrends USGS-R hydroMap USGS-R hydrofabric A geospatial water feature package for USGS data USGS-R ie2misc A collection of Irucka Embry's miscellaneous USGS functions (processing .exp and .psf files, statistical error functions, "+" dyadic operator for use with NA, creating ADAPS and QW spreadsheet files, calculating saturated enthalpy). Irucka created these functions while a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey… USGS-R ie2miscdata Irucka Embry's miscellaneous USGS data collection USGS-R inlmisc Miscellaneous Functions for the USGS INL Project Office USGS-R lakeattributes Common useful lake attribute data package for R USGS-R laketemps lake temperature data package for GLTC USGS-R loadflex Models and Tools for Watershed Flux Estimates USGS-R mda.lakes Wisconsin Lake Modeling Aggregation USGS-R mda.streams backend tools for powstreams USGS-R meddle Tools for metadata creation and data releases USGS-R modelArchive Package to aid in preparing and reviewing model archives for USGS R models. USGS-R netcdf.dsg NetCDF Discrete Sampling Geometry package for R USGS-R powstreams Tools for Powell Center working group on stream metabolism USGS-R rEnddat USGS-R rSPARROW USGS-R repgen report generation in R USGS-R restrend USGS-R rloadest USGS water science R functions for LOAD ESTimation of constituents in rivers and streams. USGS-R sbtools Tools for interfacing R with ScienceBase data services USGS-R scipiper USGS-R sedReview Functions for review of discrete NWIS sediment records. Package currently in development and testing. USGS-R sensorQC sensorQC is a flexible framework for QAQCing high-frequency data for a continuously evolving catalogue of sensors USGS-R smwrBase Base USGS water science R functions. USGS-R smwrData Data sets as data.frames and as text files for examples in the USGS core pacakges USGS-R smwrGraphs Graphical USGS water science R functions. USGS-R smwrQW Water quality USGS water science R functions. USGS-R smwrStats Statistic USGS water science R functions. USGS-R soilmoisturetools Tools for soil moisture data retrieval and visualization USGS-R streamMetabolizer streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light. USGS-R toxEval Initial code for studying ToxCast data in relation to measured concentrations. USGS-R trainR Example package for learning how to create R packages. Purposely has mistakes and missing information. USGS-R wateRuse Water use data tools USGS-R waterData USGS-R wrv Wood River Valley Groundwater-Flow Model USGS-VIZLAB vizlab Package with utilities for building vizlab pages UTSA-ICS Rswift swift command line for R UUPharmacometrics ncappc NCA Calculation and Population PK Model Diagnosis UUPharmacometrics xpose Graphical diagnostics for pharmacometric models UUPharmacometrics xpose4 Model building aid for population analysis using NONMEM UW-GAC dbR some general R tools for interacting with the GAC databases UW-GAC dbTopmedHelper Helper functions for interacting with the TOPmed phenotype database UW-GAC genesis2 refactor of GENESIS UW-GAC genesis2_tests null model and association testing code UW-GAC genetable A set of R functions to obtain gene definitions from an outside data source and make a table of those gene definitions in the GAC database UW-GAC harmonHelper Helper functions for phenotype harmonization UW-GAC wgsaparsr Code for parsing TOPMED variant annotation files produced by the WGSA annotation tool. UW-POLS501 r-uwpols501 R package for UW POLS/CSSS 501 UcarLab BiFET A robust statistical test for TF footprint data analyses UcarLab IA-SVA Iteratively Adjusted Surrogate Variable Analysis UdenVH KNMIr R package to download climate data from the KNMI API. Umercia rsf "rsf" R package: Manipulate wind resource maps (crop, vertical extrapolation, combine, reduce the number of sectors, extract shear, visualize, ... Unisens unisensR This library is a prototype to demonstrate how to use the unisens file format in R. UnlimiteBBQ Reject Reject sampling UofABioinformaticsHub TxDb.Drerio.Ensembl.gtf88 UofABioinformaticsHub fastqcReports UofABioinformaticsHub ngsReports UofABioinformaticsHub rnaCleanR UofABioinformaticsHub strandCheckR UofTCoders eeb430.2017.JuniorCoders Team Junior Coders UofTCoders eeb430.2017.Python Team Python UppsalaHenrik dismount UppsalaHenrik nmsurfaceplot UppsalaHenrik pediutils UptakeOpenSource pkgnet UptakeOpenSource uptasticsearch An Elasticsearch client tailored to data science workflows. UvA-MAD SeqLibR R package to with sequence utilities UvA-MAD faradr UweBlock ISOweek R Package to compute week of the year and weekday according to ISO 8601. UweBlock lazysql Lazy SQL programming: Helper functions to create SQL expressions which can be combined to SQL statements under program control. VCCRI C3 C3: An R package for cross-species compendium-based cell-type identification VCCRI CIDR Clustering through Imputation and Dimensionality Reduction VCCRI GEOracle VCCRI XGSA XGSA: a statistical method for cross-species gene set analysis VIKASMAGGO arithmetic arithmetic package VMTdeJong mPerformance Performance measures for multinomial outcome data VMatheusG AnalResiduos algumas funções uteis VNyaga CopulaDTA Modelling of sensitivity and specificity on their natural scale using copula based bivariate beta-binomial distribution to yield marginal mean sensitivity and specificity. The intrinsic negative correlation between sensitivity and specificity is modelled using a copula function. A forest plot can be obtained for categorical covariates or for the model with intercept only. VNyaga NMADAS Network meta-analysis of diagnostic data VPetukhov dropEstAnalysis Analysis for dropEst paper VPetukhov ggrastr Raster geoms for ggplot2 VSNC VSN-EDU VSNC vsnc VZoche-Golob AFTtools Tools for the Data Preparation, Fitting and Diagnostics of Accelerated Failure Times Models via 'survreg' in R VZoche-Golob ClusterTools R package with convenience tools for clusteranalyses VZoche-Golob RAdis "Radis" is "radish" in some German dialects - RAdis provides you functions to import data from ADIS (Agrocultural Data Interchange Syntax) files into R (https://cran.r-project.org/). VZoche-Golob UdderHealthMonitor R package that allows to analyse the udder health of dairy cow herds. VadimSokolov pacourse Valaravaus ubeR RawR Valdimus HDFSWorkspace ValentinVoillet mihmR ValeraKaravai bunny ValeriVoev VRVPackage Coursera test package Vancamjr jvctools Personal R function library Vatticson simplexTableMTE Vatticson welchMTE Para la aproximacion de welch VaughanR0 Streamline-R Modified version of the hts package for use with Streamline project VectorPosse datafinder Catalog the variables from data sets Veera1789 myfirstRPackage Veera1789 test2 Veera1789 veeraRUtility This package contains some of the most reusable functions in R. This helps me to save time during my work. VeerlevanLeemput fars VermeirJellen PoloniexR R wrapper for the Poloniex Cryptocurrency Trading API (Package) VeronikaPel Basic_function Basic function from lecture of bioinformatics programing Vertical-Datashield bw.vertical.comms Becca's development space for vertical comms Vessy Rmaze Maze generators in R Vessy sysBio R package for systems biology modeling ViMilos belex Download Historical Data from the Belgrade Stock Exchange Viant-Metabolomics msPurity Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics VicFreguglia GibbsRF R package GibbsRF VictorAmse myprobit VictorMattos bmteam.ProjectTemplate Customization of **johnmyleswhite/ProjectTemplate** VidhiKhare17 prfavidhiknew ViennaR SentimentAnalysis ViennaR startupPackage VimalRawat1010 MethPlotR This Repo contains scripts for DNA BS-seq data plotting & Analysis Vin985 ecapputils Utilities forEC apps Vincent-AC wellexplainer R package to process microdilution MIC and checkerboard data VincentToups Graph VincentToups fugu Functional/Function level programming in R ViniciusBRodrigues GLMdiagnostic This package generates the following plots for Generalized Linear Model diagnostics: Q-Q plot, Residuals vs Fitted, Histogram of Residuals and Cook's distance plot. Vintonm49 ladygolfstats A package for collecting web-based women's professional golf statistics. Vintonm49 ytcol VirtuaGod AnaliseFI a Vitlik DA1-16 Repo for the casestudy of Data Analytics 1 WT 2016/17 Vitlik DA2-17 VitorAguiar biostats VitorAguiar genomicRutils VitorAguiar ggmanhattan VitorAguiar hlahaps VitorAguiar hlatools Tools for manipulating and analyzing HLA sequence data VitorAguiar patR scripts to manipulate paternity analysis data Vivianstats MSIQ Joint modeling of multiple RNA-seq samples for accurate isoform quantification Vivianstats scImpute Accurate and robust imputation of scRNA-seq data VizTalk tryr just for try VladaMilch Incubator_18october VladaMilch MiceMonterotondo VladaMilch ProbeRemapStep3 No description or website provided. VladaMilch ProbeSetsNEW VladaMilch Probesets_to_Package VladaMilch pdProbeRemap Voltemand collatzr What the Package Does (one line, title case) VonWebEinstein ReactomeAPI Reactome API and little extension VonWebEinstein keggAPI kegg web api WIAS-BERLIN dti WIAS R package for neuroimaging (dti) WIAS-BERLIN fmri WIAS R package for neuroimaging (fmri) WIDworld wid-r-tool R package to download data from the WID.world database WISE-Community StudentDataAnalysis R package StudentDataAnalysis WJL-NCSU Rnets The Rnets package for mapping resistance relationship networks WMBEdmands CompMS2miner metabolite identification R-package for metabolomic high-resolution LC-MS datasets. WMBEdmands MetMSLine R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software WMBEdmands compMS2Miner metabolite identification R-package for metabolomic high-resolution LC-MS datasets. WMBEdmands simExTargId Performs simultaneous raw data to mzXML conversion (MSConvert), peak-picking, automatic PCA outlier detection and statistical analysis, visualization and possible MS2 target list determination during an MS1 metabolomic profiling experiment. WMeyerson STV WMuruet13 StrokeTimes WSpiller RadialMR An R package for fitting and visualising radial inverse variance weighted and radial MR-Egger models. WT215 bayNorm Normalization for single cell RNA-seq data WannabeSmith Robust-bootstrapped-t-test WannabeSmith TMA4315-Project-1 WannabeSmith rbtt Ward9250 HybridCheck HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions. Ward9250 SNPsim Ward9250 SuperTypeR Functions for working with supertypes Ward9250 homebrew-ward9250 Ward9250 testRpkg A simple package for testing, developing, and providing reproducible examples. WarrenDavidAnderson dynamicNetworkID HMF method package version 1 WastlM polyCub An R package for numerical integration over polygonal domains WaverlyWei GA Wedge-Oxford battenberg Battenberg R package for subclonal copynumber estimation Weibull-R WeibullR Initial upload Weibull-R contour Likelihood Ratio Contours WeigeHuangEcon ccfa R Package: Counterfactual Analysis WeigeHuangEcon cfa R Package: Counterfactual Analysis Weiming-Hu RAnEnExtra This is a R package that contains extra helpful functions for the RAnEn package. WeiqiangZhou SCDV Single cell differential variance analysis WeissenbergerSven ShotAnalysis Wenchao-Ma ACTCD Wenchao-Ma GDINA GDINA WendyLiuLab BiactivationFlow Flow cytometry data for "Regulation of macrophage polarization and plasticity by complex activation signals" (Smith, 2016). WendyLiuLab Hsieh2016PCR Supporting information for "Differential regulation of macrophage inflammatory activation by fibrin and fibrinogen." WetRobot popEpi An R package for epidemiological analysis using population data WetRobot testPkg WilCrofter bondR No description or website provided. Willdata tigerhitteR A R package that provides functions to do data pre-process for time series analysis. WillemPaling RDoubleClick R Client Library for the DoubleClick Campaign Manager Reporting API WillemSleegers tidystats R package to produce a tidy output file of statistical models. WilliamAMartinez STMedianPolish modelling spatio-temporal processes with arrays and median polish technique WilliamCooper Ranadu R-based Analysis for NCAR-Aircraft-Data Users WinVector QSurvival Quasi observation based survival package for R. WinVector WVPlots Pre-packaged plots in R WinVector cdata Higher order fluid or coordinatized data transforms in R WinVector crosspca Cross-validated PCA/PCR demonstration based on the work: http://www.win-vector.com/blog/2016/05/pcr_part2_yaware/ WinVector daccum Example library to accumulate data frame rows in R WinVector replyr Fluid Use of Big Data in R WinVector rquery Data Wrangling and Query Generating Operators for R WinVector seplyr Improved Standard Evaluation Interfaces for Common Data Manipulation Tasks WinVector sigr Concise formatting of significances in R (GPL3 license). WinVector vtreat ‘vtreat’ is an R data.frame processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. WinVector wrapr Wrap R Functions for Debugging and Ease of Use Winston-Gong sisbid3demo WubingZhang MAGeCKFlute A pipeline of functional analysis for CRISPR screen data WynWinz PISAFinal Final Assessment for R: Programming for Analytics WynWinz prfa_emellett My first R package XD-DENG ECharts2Shiny To insert interactive charts from ECharts into R Shiny applications (在R Shiny app中插入ECharts可交互图形) XD-DENG Rtts R package "Rtts" - Text to Speech XD-DENG SG.Zipcode.Mapping The Mapping between the Zip Code and District in Singapore XD-DENG StockChina This is a R package helping grab the real-time stock information in China market XD-DENG modify-geepack Help add a new module in "geepack" R package XFW decon Deconvolution in Measurement Error Models XSEDEScienceGateways TAG Text Analytics Gateway XUPUCHEN lrem XanderHorn visualizeR Xia-Zhang CSESA Clustered regularly interspaced short palindromic repeats locus spacer pair typing method for salmonella Xia-Zhang MixedGraphs An R package for the mixed graphical models XiangdongGu icensmis Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes XiangdongGu straweib Stratified Weibull Regression Model XiangyunHuang PkgsInfo download all CRAN R packages's DESCRIPTION and daily update XiaodanLyu IDNR_SWG_Shiny IDNR SWG Project Shiny XiaoleiLiuBio MVP A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study XiaoliangJiang IndependentStudy2017YW XiaomoWu utilr My utils functions for data processing routine XiaoruiZhu DataClean DataClean package XiaosuTong Spaloess Spatial Locally Weighted Regression XiaosuTong drSpaceTime Divide and Recombined for Spatial-Temporal Analysis XiaosuTong drsstl Divide and Recombined for Spatial-Temporal Analysis XikunHan quickReg Xin-Stat MethlSStest Xin-Stat MethylSStest XinruLI FEmrt XinruLI metacartv0.1.0 a building rpackage for meta-cart XinruLI new-existing Xu-Qin MultisiteMediation This package enables causal mediation analysis in multisite trials, in which individuals are assigned to a treatment or a control group at each site. It allows for estimation and hypothesis testing for not only the population average but also the between-site variance of direct and indirect effects. This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. YC3 SEPIRA Systens EPigenomics Inference of Regulatory Activity YDAckerman helperFunctions No description or website provided. YMehmetKutluay myfirstpackage YTLogos SIMLR YTLogos circlize YTLogos countrycode YTLogos dplyr YTLogos easyGgplot2 YTLogos ensembldb YTLogos exploratory YTLogos factoextra YTLogos gapminder YTLogos gganimate YTLogos ggcorrplot YTLogos ggforce YTLogos gggenes YTLogos ggmap YTLogos ggplotgui YTLogos ggpubr YTLogos ggraph YTLogos ggshape YTLogos ggsignif YTLogos ggthemr YTLogos hrbrthemes YTLogos kerasR YTLogos myTAI YTLogos patchwork YTLogos rquery YTLogos shiny YTLogos shinyjs YVcode anthR Yafei611 idr3c R package for "A semi-parametric statistical model for integrating gene expression profiles across different platforms" YafeiXu CDO YafeiXu CopulaModel Joe and Krupskii's r-package YafeiXu EnergyOnlineCPM An R Package for Phase II Multiple Change Points Detection based on Energy Statistic YafeiXu cdov YafeiXu tryFromWind Yailama Home-Assignment-4 my first package Yailama assignment4 package for assignment Yang-Tang shinyjqui jQuery UI Interactions and Effects for Shiny Yang0014 MassSpectrometry Tools for MassSpectrometry Yang0014 glycoNativeMS Scripts for Paper Yangzhichao95 far An assessment of the Building R packages Yanhao29 GeoRatio YaoZhou89 BLINK YaoZhou89 GST YaoZhou89 HDGENE HDGENE: High Dimensional Genetic Association Analysis Package YaohuiZeng bigSVM Solution Paths of Sparse SVM with Lasso or Elastic-Net Regularization For Big Data in R YaohuiZeng biglasso biglasso: Extending Lasso Model Fitting to Big Data in R YaohuiZeng grpregOverlap Regularization paths of linear, logistic, Poisson, or Cox models with overlapping grouped covariates Yaroslav-Lyutvinskiy MZAccessR R Client for MZAccess web-service Yeedle miscr miscellaneous helper functions to use within the tidyverse Yezersky Refficiency network efficiency R package YiLiu6240 yxlR General purpose R utility functions. YiLiu6240 yxlRutils My utility functions for R YinanZheng HIMA High-dimensional Mediation Analysis (HIMA) YinanZheng HMA Watch YinanZheng PGS Penalized GEE with Grid Search (PGS): Penalized GEE model for association study of ultrahigh dimensional data YinanZheng REMP Github repository for REMP Yinghao-Pan ODS ODS YiyiLiu1 bdChemo Estimating dose-specific cell division and apoptosis rates from chemo-sensitivity experiments YoJimboDurant rHamr importing a Ham adif file into R YoJimboDurant rmet2 R package for downloading data, processing, and QA'ing US EPA's AERMET program YohannLeFaou sword Survival Weighting fOr Regression of Duration YongLuo007 BCForestInventory functions to compile BC forest inventory data YonghuiDong MSbox MS tools for analytical chemistry YonghuiDong Miso R package for Multi-isotope Labeling for Metabolomics Analysis YosefLab FastProjectR FastProject for R YosefLab ImpulseDE ImpulseDE YosefLab ImpulseDE2 YosefLab LineagePulse YosefLab scone Yotabites bisectingkmeans Sparklyr extension for bisectingkmeans algorithm YoungjunNa animal a package for animal scientist YsoSirius windfarmGA R Package to Optimize the Windfarm Layouts Yuanchao-Xu gfer Green Finance and Environmental Risk Yuanchao-Xu gferplot Plot functions for gfer Yuanchao-Xu hyfo Hydrology and Climate Forecasting R package Yuanchu creditr creditr package Yue-Jiang rask send error / warning / whatever to google or stackoverflow from within R Yukun1218 ConvertTemp test package YukunZhang PAactivPAL YukunZhang PAactivPAL1.0 No description or website provided. YukunZhang test YulongNiu BioCycAPI R package providing BioCyc API. YulongNiu BioCycTU Batch retrieve the transcription units from BioCyc database YulongNiu BioCyc_API R package providing BioCyc API. YulongNiu KEGGAPI R package providing KEGG API. YulongNiu KEGG_API R package providing KEGG API. YulongNiu KEGG_BioCyc_API This package is obsolete, please check "KEGG_API" and "BioCyc_API" YulongNiu NCBIAPI R package provides NCBI API. YulongNiu NCBI_API R package provides NCBI API. YulongNiu ParaMisc R package containing miscellaneous functions for parallel programming. YulongNiu PhyloProfile A R package for phylogenetic profiling analysis. YulongNiu PhyloProfileSuppl A supplementary R package for web-based phylogenetic profiling analysis YulongNiu ProGenome A package for processing prokaryotic genomes YulongNiu TimeReg A R package to find gene regulation patterns from time-course data. Yuming-Zhang test YunlongJiao kernrank kernrank is an R package implementing kernel functions and kernel methods for analyzing rank data. YunlongNie ABCBen YunlongNie BayDR RPackagesCode YunlongNie EasyABCBen version 1.5 YunlongNie Projects YunlongNie flyfuns YunlongNie latexhandy YunlongNie makingRpk R package for making R package YunlongNie sFPCA Yunqiang12 rStroke Yves-CHEN sCNAphase Profile haploid somatic copy number alterations,especially for NGS sequencing data on significantly contaminated tumor samples Yves-CHEN test Yves-CHEN viewGenome This is a collection of plots designed to view human genome by per chromosomes with cytobands, or view in d.SKY YvesCR Ropencorporate connector-like to the open corporate database through call to the API YvesCR arimaUI Shiny gadget/add in arimaUI to pick arima parameters YvesCR flexocpu Exemple of use of opencpu in a flexdashboard ZWang-Lab LSKAT ZYBunnyHu masonmd R package to predict mutations whether can elicit nonsense-mediated decay or not ZZhiming helloR ZajacT test Zanidean sRa Functions to speed up the work of a post-secondary institutional research analyst. Zanidean xmrr Generate XMR Control Chart Data from Time-Series Data Zelazny7 LNmisc Zelazny7 asif SAS-style if/then/else logic for R Zelazny7 bento Zelazny7 binnr Binning in C through R Zelazny7 binnr2 Refactoring binnr to S4 Zelazny7 boostcard Gradient boosted risk scorecards Zelazny7 isofor Isolation Forest implementation in R Zelazny7 onehot Quickly transform data.frames into onehot encoded matrices Zelazny7 onex Scorecard builder inspired by that other company's software Zelazny7 onyx2 don't ask Zelazny7 rosetta Translate R objects to SAS/ECL Zelazny7 rubbish Refactoring binnr yet again... this time using reference classes Zelazny7 rulefit Fit Lasso model to binary rules created from tree ensembles Zelazny7 sassyr SAS-style if/then/else logic for R Zelazny7 timbr Unified interface for R's many tree algorithms ZellW JHU_Shiny ZellW LearnPlotting Learn how to plot by comparing other solutions ZellW ShapeFilesCourse ZeroStack basic functions not addressed in base ZeroStack neuralnet A neural net from scratch in R ZeroStack stockscreen Stock Screen Package ZeroStack week2 Coursera Week 4 Project ZhangHaoquan BuildingAnRPackage Coursera Assignment ZhangHaoquan MasteringSoftwareDevelopmentInRCapstone ZhenWei10 RbashGEO Run bash bioinformatics in R ZhenWei10 m6ALogisticModel A R package to extract features and conduct logistic regression analysis for RNA modification genomic data. ZhenWei10 meripQC An R package for the quality control of MeRIP datasets. ZhenWei10 rBS2ndStructure The package for the filtering of the thermal stable RNA 2ndary structures in RNA bisulfite sequencing data ZhengguoGu RSCA A collection of functions for performing data fusion from multiple datablocks ZhengguoGu RegularizedSCA A collection of functions for performing data fusion from multiple datablocks Zhiqiangcao fdr r pckage to calculate local fdr Zhiqiangcao gmusim A R package for sim model Zhiqiangcao iapvbs Individual apv, pv and ypv based on sitar Zhiqiangcao sim Growth modelling using a shape invariant model Ziegelsteintom bcdataprep #TODO add description Ziegelsteintom rmazing R - package for mazes (algorithms from Jamis Buck: Mazes for Programmers Zongzheng forestHES An R package for national forest health evaluation system at the forest stand level in China Zongzheng forestSAS An R package for forest spatial structure analysis systems Zouter MPath Zouter MPath_gh Zouter modex Zouter splitauc Zouter triwise ZurichPA honeycomb dplyr backend for Hive ZurichPA orpheus Hive connections with RJDBC and (optionally) Kerberos ZwAnto ahm.ads ZwAnto ahm.plot ZwAnto ahm.utils ZwAnto lncln.ahm.ads Zyufei Rstudy a-henderson91 vectorbornefit R package for fitting vector borne disease SEIR models with MCMC a-parton CTStepTurn Continuous-time step-and-turn animal movement a-paxton paramtests Automated exploration of mixed-effects model parameters in R a1kaul FitHiC aLFQ aLFQ An R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data aMilles rsfsim aMilles rsfsim3 aMilles rsfsimulator aWhereAPI aWhere-R-Library An R package that facilitates accessing the aWhere Ag Intel Platform using R aaarchmiller uhcplots R Package to Create Used-Habitat Calibration Plots described in Fieberg et al. (In Review for Ecology Letters) aalfons ccaPP aalfons cvTools aalfons laeken Estimation of indicators on social exclusion and poverty, as well as Pareto tail modeling for empirical income distributions. aalfons perry aalfons perryExamples Examples for integrating package perry for prediction error estimation aalfons robgpu aalfons robmed aalfons robustHD aalfons simFrame aalfons sparseLTSEigen aallignol Cprob Conditional probability function of a competing event aallignol etm aallignol kmi Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting aallignol mvna Multivariate Nelson-Aalen estimator aalvaradob Prueba1 Coursera aametwally MetaLonDA METAgenomic LONgitudinal Differential Abundance method aappling-usgs scipiper aarasu rass2rep aariani easyLG R package for landscape genomic analysis with Shiny aaron2012r2 cosmosR Basic test functions for interacting with a CosmosDB REST API using the DocumentDB protocols in R aaronbarnett rstab Utility Knife(s) for R aaronferrucci WharfToWharfR R package for race data, Santa Cruz's Wharf to Wharf aarongowins ShinyPubMed aarongowins yplot Yu's plot utilities aaronjfisher designOptim R package for optimizing adaptive enrichment designs aaronmberger Geo_dGLMM_habitat geostatistical delta GLMM model with covariates aaronolsen StereoMorph R package for the collection of shape data using a stereo camera setup aaronolsen bezier R package for Bézier point generation, arc length estimation, degree elevation, and curve fitting aaronolsen linkR R package for simulating and analyzing the kinematics of 2D and 3D linkage mechanisms aaronolsen matools Motion analysis functions for R aaronolsen svgViewR R package for creating 3D animated, interactive visualizations that can be opened in a web browser aaronpeikert fromr aaronrudkin pkgdown A very quick hack of pkgdown to generate custom templates and fix bugs. I will do a proper fork later to offer this back to the upstream project as a patch. aaronrudkin werner A R package designed to improve package code quality by assessing relationships between functions in packages. aaronsaunders aaronsaundeR My scripts package aaronsaunders qpcR The package includes functions for parsing output from Stratagene qPCR machines and working with them in R. aaronsaunders stratRgene A simple package for using R to analyse qPCR data from the Stratagene qPCR machines. aaronwolen AnnotationHub aaronwolen aaronwolen.github.io aaronwolen activitymonitor Parse zone files generated by Med Associates Activity Monitor aaronwolen bingd bayesian integration of genomic data aaronwolen biolink :link: R package for creating hyperlinks to biological databases and resources aaronwolen composer aaronwolen dmGWAS2 A fork of dmGWAS (http://bioinfo.mc.vanderbilt.edu/dmGWAS) aaronwolen gqq aaronwolen growthcharts Growth charts for infants and children ages 0 to 2 using the WHO's Child Growth Standards. aaronwolen gwasio Standardize heterogeneous GWAS results. aaronwolen liftover Convenient conversions between genome assemblies aaronwolen linkit R package for creating hyperlinks to online databases and resources aaronwolen metafiler Taxonomic profile visualizations aaronwolen mimager mimager: The microarray imager aaronwolen mxtx mxtx: OpenMx Transcriber aaronwolen pgcxd aaronwolen ralfred R package for analyzing Alfred usage. aaronwolen tcgatools A collection of small tools for working with data from The Cancer Genome Atlas aaschroeder wru_update aasrinivasan hleaps The hleaps R Package aatrujillob Rticles_Local aayala15 AssetPricingTests R package for the estimation of asset pricing models using GMM aayushraman DASC Detecting hidden batch factors through data adaptive adjustment for biological effects abagherp farsviz R package for "Building R Packages" course by Coursera abahram77 familiarDistribiution abarbour beachball Beachball representations of seismic moment tensor for R abarbour cb.city Access the myriad palettes offered by Cynthia Brewer at cpt-city with R abarbour deform Crustal deformation codes abarbour eqldens Agnew's Mapping of Earthquake Magnitudes to Gutenberg-Richter Distributions abarbour hydrogeo Tools for Hydrogeology Calculations abarbour irisws Access to IRIS Web Services within R abarbour kelvin Solutions to the the Kelvin differential equation in R: abarbour kitagawa Theoretical spectral response of a water well to harmonic strains abarbour occr Access to the OCC Oil and Gas database abarbour pborepo A repository for information for Plate Boundary Observatory (PBO) stations and their data products. abarbour poel abarbour psd Adaptive sine-multitaper spectrum estimation in R: abarbour sibson Fault reactivation abarbour strain Tools for working with geodetic strainmeter data in R abarbour stress Functions to work with stresses from focal mechanism inversions in R abarbour yhs.catalog The Yang, Hauksson, and Shearer (2012) focal mechanism catalog for southern California in R abarciauskas-bgse bplmnist R package for bayesian program learning on the mnist data set abarciauskas-bgse cphtbo R package for making classification predicitions abelcastilloavant csmpi generic, extendable cloud storage MPI abell8 PQPQ abelsonlive csvsoundsytem abelsonlive gastronomify abelsonlive graphpipe abelsonlive scraply aberHRML FIEmspro FIEmspro abhijith-asok Linreg abhik1368 C-programs abhik1368 complexity abhik1368 kagglehiggs abhik1368 netpredictor Algorithms to predict missing links abhik1368 rUniChEMBL Accessing Unichem and ChEMBL through R abhimishr FADNUGent FADN Data analysis from master thesis of Abhijeet Mishra @UGent, Belgium abhinav-piplani Assignment1 abhinav-piplani Building-R-Package Coursera course Advanced R Programming abhinav-piplani R-Package Repository for first R Package abhinav-piplani earthquakeR Repository for Coursera-Software-Development-in-R-Capstone abhisheksinha08 mssqlR Use mssqlR to query data from MS SQL Server. Based on the concept on Entity Framework, the package allows querying data from MS SQL Server Database. abhy sentiment Sentiment Package for R abielr myrutils abielr pdfetch R package for retrieving public data abilinski causeIt abilinski causeIt2 abilouhill LC50 Watch abjur abjBook Template para books da ABJ abjur abjData abjur abjMaps Codes to make beautiful jurimetrics maps abjur abjutils Useful functions for the Brazilian Jurimetrics Association abjur alocTJSP App de alocação de varas no TJSP abjur assuntos abjur brcrimR Brazilian Criminal Information in R abjur carf Scraper do Conselho Administrativo de Recursos Fiscais abjur cnc Scraper do CNC-CNJ abjur dje Scraper de DJEs abjur djt Scraper dos diarios da justica do trabalho abjur ggantt Simple gantt charts with ggplot2 abjur inacBook Book da analise sobre o CNC - INAC abjur litigation New project: Does Income Cause Litigation? abjur peticoesTJSP abjur prodTJSP Scraper productivity data TJSP abjur relTemplate Template de relatórios da ABJ, em pdf e word. abjur reologia Será que é possível estimar a viscosidade de um processo? abjur reunioes Documentação de reuniões da ABJ. abjur rjn Interface para Justiça em Números abjur senasp Códigos do projeto SENASP 2016 abjur senaspExec Relatório Executivo SENASP abjur tidyML Organiza os dados dos Tribunais - Projeto CNJ - Maiores Litigantes abjur tjsp Scraper do TJSP (usa esaj e contém funções extras) abjur tjspBook abjur tpur Brazilian Unified Procedural Tables in R ablack3 icdpicr icdpicr ablaette bubblegraph R package to visualize tables as a bubblegraph ablanda deepForest deepForest by ranger ablejec amisc Various Somewhat Useful Functions: an R package ablejec animatoR Support for Animated Graphics in Base R Graphics abmantz lrgs An R code to perform multivariate linear regression using Gibbs sampling aboruvka coxinterval An R package for Cox-type models with interval-censored data abossenbroek GeneralTree A R package for the implementation of a tree where each node can have any number of children. abossi diffRgit Create an HTML git diff widget using the diff2html library abraham314 pyboo abresler Alex_Learning_R abresler bokeh_test abresler entitySearchR Legal entity API wrappers for R abresler forbesListR R wrapper for the Forbes list API abresler fundManageR An Investment Management toolkit for R. Because Excel is a threat to the global financial system. abresler gdeltr2 R's modern interface to The GDELT Project abresler markovifyR Markovify wrapper for R abresler nazihuntR Tools to explore the Nazis of Auschwitz abresler nbastatR NBA Stats API Wrapper and more for R abresler rChartsShine abresler rbokeh-master abresler requestsR R interface to Python requests module abrionne eggbiomechanic The aim of the eggbiomechanic package is to allow a rapid and reproducible analysis of the biomechanical parameters of the chicken egg. abrozzi microbio A set of R functions, tools, utilities and wrappers to perform bionformatic analyses applied to Microbiology. abshah RADseqR A R wrapper package for Stacks RADseq package abx56 mrmr ac21 RSegmentIO R client for Segment.com (formally Segment.IO) ac2278 BIGRED ac2278 BTRED acabassi spells acaimo Bergm Set of Tools to Analyse Bayesian Exponential Random Graph Models acartauchenius rhue acdh-oeaw geocoding acdh-oeaw styloWorkshop acelejewski episoder acgerstein diskImageR diskImageR package achafetz factviewutilities Utility Functions for Working with ICPI Fact View Dataset achalshah20 ANLP R Library to build next word prediction model achalshah20 AchalNLP R Library to build next word prediction model achambaz simpsons.marbles simpsons.marbles: Modest Package To Play Around With Marbles And Simpson's Paradox achambaz tmle.npvi R package tmle.npvi achambaz tsml.cara.rct R package tsml.cara.rct achateigner apeRcu achateigner topReviGO Chain topGO and REViGO analyses to produce treemaps achubaty amc Alex's Miscellaneous Code achubaty grainscape Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks acjackman acjackmanr acjackman building_r_packages acjackman dbezr aclemen1 modulr Modulr: A Dependency Injection Framework for R acnb ggpub Publication ready figures with ggplot a tiny bit easier acoppock attrition attrition acoppock commarobust This package helps with an small problem: it can be annoying to put robust standard errors in a stargazer table. acoppock noncompliance noncompliance acoppock randomizr Easy to use tools for common forms of random assignment acoppock ri2 Randomization Inference for Randomized Experiments action781 topten topten package actuarialvoodoo insuranceSimModel actuaryzhang cplm Compound Poisson Linear Models acwagnerucd Rsurveygizmo2 A package for downloading survey and campaign data from Survey Gizmo ad1729 akshat ad1729 findBug adalardo Rppsp R functions to manage São Paulo Forest Plots database adalardo lmBuffer adalardo neutraPack simulation adalardo stratefyR Calculate CSR ecological strategies using Pierce et al. 2017 methods (Functional Ecology 31(2): 444-457) adalau Quant R Package adam-erickson gapfraction R functions for LiDAR metrics of canopy light transmission adam-gruer ozunConfIssues analyse the data from the ozunconf 2017 github repository adam-gruer testfiery exploring the fiery web server package adam-sam-brown ksRepo ksRepo - A Generalized Tool for Computational Drug Repositioning adamMaier reviewr Assists the review of data wrangling and anlaysis code adamSales lrd Replication Materials for "Limitless Regression Discontinuity" adambakewell saplings Primitive functions for speeding up elements of a phylogenetic comparative workflow adambondarzewskiITF utilitiesAdamExample adamdsmith MABM MABM (Mobile Acoustical Bat Monitoring) package adamdsmith MABMreportr Annual report generator for MABM adamdsmith adsmisc Miscellaneous functions for natural resource science and ecology adamdsmith fwsinat Retrieve (or update prior retrievals of) iNaturalist observations on USFWS properties, harvest observations to the USFWS NWRS project, and export property-specific observations to spreadsheets for distribution adamdsmith fwspp Query species occurrence observations on USFWS properties adamdsmith geobird adamdsmith ggscalebar Function(s) to facilitate the addition of custom scale bars and north arrows to ggplot2 objects adamdsmith itistools A function (and some helpers) to pull basic information from ITIS for a given suite of scientific names adamdsmith nwrspp adamdsmith pinpoint Functions for working with Lotek PinPoint tags adamdsmith r4streams USFWS R4 stream temperature data processing and visualization adamhsparks BOMRang Fetch Australian Government Bureau of Meteorology Data adamhsparks EPIRICE A fork of the R cropsim package designed to make using the EPIRICE model for rice diseases easier adamhsparks EddyCleanR Fills gaps and removes outliers in eddy covariance data. Calculates 24hr evapotranspiration based on the cleaned data. adamhsparks GRID GSOD(R) Interpolated Data adamhsparks GSODR Global Summary Daily Weather Data in R adamhsparks GSODRdata Climate and Ecological Data for the GSODR Package adamhsparks IRRIEddyClean Fills gaps and removes outliers in eddy covariance data. Calculates 24hr evapotranspiration based on the cleaned data. adamhsparks ThetaProbe Download, clean and generate a single file from USQ theta probe soil moisture data adamhsparks epiRice A fork of the R cropsim package designed to make using the EPIRICE model for rice diseases easier adamhsparks epirice Simulation modelling of rice crop diseases adamhsparks getCRUCL2.0 Download and Create a Tidy Data Frame or List of Raster Stacks of CRU CL2.0 Climatology Elements adamhsparks getCRUCLdata Download and Create a Tidy Data Frame or List of Raster Stacks of CRU CL v. 2.0 Climatology Elements adamhsparks nasapower NASA-POWER Agroclimatology Data from R adamhsparks theme.usq Provides USQ style typography, colours and graph themes for R adamhsparks theme_usq Provides USQ style typography, colours and graph themes for ggplot2 adamhsparks weathR Download and manipulate freely available weather and climate data adamkocsis divDyn R package for analysing diversity dynamics with Paleobiology Database occurrences adamkucharski SIRfinalsize adamleerich Yankee CT SERS Modeling for Yankee Institute adamleerich alrtools My own stuff for R adamleerich rwebserver adamlilith enmSdm Faster, better, smarter ecological niche modeling and species distribution modeling adamlilith omnibus Better utility functions adammwilson DataScienceData adamreimer preseason adamrtalbot atalbot General R packages for use in R adamrtalbot rlesion adamryczkowski PostHocGroups Approximation of paired post-hoc results as mutualy exclusive sets adamryczkowski clustertools Wrapper around parallel:cluster* functions using R6 classes adamryczkowski danesurowe R Interface to my internal "dane surpwe" Excel data frame format using the readxl library adamryczkowski depwalker adamryczkowski objectstorage Manages local storage of objects. adamryczkowski pathcat Utilities for path concatenation and making paths relative adamryczkowski rdep Package with all commonly used dependencies adamryczkowski relationshipMatrix Reads the Excel-compatible relationship matrix, that contain list of all pairwise analysis to do. adamryczkowski svSocket Patched a bug in an R library svSocket, that breaks `evalServer(con,'a<-c(\'b\',"c")')` adamryczkowski yaplr Yet another parallel library for R adamryczkowski yuxiaCharts Chart and simple analysis generating package to be utilized with relationshipMatrix adamstruck RECD Repeat Expension and Contraction Dectection adamstruck ga4ghr R client for GA4GH API adarapv gistools adbecker tsiR tsiR: A package to run time-series Susceptible-Infected-Recovered models in R. adbpatagonia SealDietAnalysis Scripts for diet analysis of seals adchSTATS MyGeneralFunctions adchSTATS MyPhDPackage adchSTATS SpatStat3D adchSTATS SpatStatSphere adchSTATS icpp Simulate limit of iterated cluster processes adchSTATS spatstat3dsphadd adchSTATS spatstatciradd Additions to spatstat adchSTATS spatstatspacesphereadd Addition to the spatstat package containing functions relevant for data obsered in the space-sphere product space adchSTATS spatstatsphadd Additions to spatstat addyag93 farsReport This package has been built to visulaize US FARS (Fatality Analysis Recording System) data that is accomplised by the functions that read, summarize and visualize US FARS data.To do that you need to download the data files and place them in the working directory of your code. adeckmyn mapEdit Edit R maps. An obsolete bunch of non-documented R code. Try mapMaker! adeckmyn mapMaker Create maps for the R package 'maps adeckmyn mapdataNE An R package with updated map data (from Natural Earth) to supplement the basic maps package. adeckmyn maps R package for geographical maps adel922 blmPackage No description or website provided. adel922 packageblm2 adelahay BrainCell BrainCell a R package to explore gene sets in the context of brain and neurodevelopment adelahay BrainCellH R package to build Brain Cell Heatmap (gene set expression pattern across adult mouse cortical cell taxonomy from the Allen Brain institute single cell RNAseq dataset) adelmofilho HBFS adelmofilho HjorthR R Package for Hjorth´s Parameters estimation adelmofilho TsallisMath R package that provides a robust implementation of q-functions, and algebra, calculus and statistics from Tsallis thermostatistics. adeschen PairedPermutationTest R package to carry out permutation tests on paired observations adeschen methylInheritance Bioconductor Package - Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment. adeschen nucleoSimShiny Interactive generation of nucleosomes maps using Shiny framework and based on Bioconductor nucleoSim package adeschen similaRpeak Bioconductor Package - Metrics to estimate the level of similarity between two ChIP-Seq profils adfi torbie Simulate values from probability distributions adhok plotmatrix R library to plot matrices adiamaan92 foobar Model R Package adibender coalitions Poll based calculation of coalition probabilities adibender ldatools Utility functions for life-time data analysis adibender pam adibender pamm Piece-wise exponential Additive Mixed Models (PAMMs) adibender pammtools Piece-wise exponential Additive Mixed Modeling tools adigherman fars Week 4 assignment for the "Building an R Package" Course adigherman kirby21.mricloud adigherman neuroc.sysreq System requirements processing for Neuroconductor adigherman spant adimajo scoring R Scoring Package adimitromanolakis rareBF Bayes Factor methods for rare variant association adimitromanolakis sim1000G Simulation of rare and common variants based on 1000 genomes data adimvs predictiero adisch87 COMCORDEcml Functions to retrieve rainfall from Commercial Microwave Links. adjust airbrake-client-r An R client for the Airbrake API adjust api-client-r an R client for the KPI service https://docs.adjust.com/en/kpi-service/ adjust csv-gists-r Facilitates maintaining CSV on gist.github.com directly from R objects adjust rport Rport - Business Intelligence apps with SQL and R adletaw captioner an R package for generating figure/table numbers and captions, especially for Rmd docs adletaw craigr get craigslist data into R admurali self Simple Exploratory Learning Framework (Using R) adokter bioRad R package for extracting and visualising biological signals from weather radar data adokter birdRad R wrapper for vol2bird - under development adokter droprate analysis of interval data with missed event observations, e.g. for estimating goose faecal dropping rates adokter intRval analysis of interval data with missed event observations, e.g. for estimating goose faecal dropping rates adokter intRvals analysis of interval data with missed event observations, e.g. for estimating goose faecal dropping rates adolfoalvarez SAGRA Splittind And Group Recombining Algorithm adolfoalvarez adolfoalvarez adolfoalvarez fastandbig adolfoalvarez test2 This is a Test Package adomingues cleaneRnames Single function R package to clean the output of base::make.names adrHuerta MIDAS MonItoreo DecadiArio de precipitaciones del SENAMHI (MIDAS) - dekadal precipitation monitoring of SENAMHI adrHuerta hw_coursera The purpose of this assessment is for me to combine my skills of creating, writing, documenting, and testing an R package with releasing that package on GitHub adrauc socialsemR Spring 2017 seminar at the University of Zurich adrauc soundR adriaalcala AligNet R-package AligNet adrianadermon sibcorr Sibcorr adriansidor antminer adrowe1 RNAseqCompare import RNAseq differential expression results to R and plot them usefully adrowe1 devclir testing dev for clir adrowe1 drugHunteR An R package to supply functionality to the Drug Hunter high through-put drug screening app. adrowe1 test first shot at creating and uploading an R package that does very little! adrtod bastiR Outils pour le suivi de chantier adrtod citadels Play random games of Citadels adrtod rchallenge A simple datascience challenge system using R Markdown and Dropbox. adrtod rfastFM R interface to the fastFM library adsteen Lloyd.et.al.Cell.abundance.metaanalysis Code pertaining to a manuscript about a metaanalysis of cell quantification methods adsteen classex Silly R package used as an in-class example adsteen digestR Database for Interpolating Geobioinformatic something something R adsteen enzalyze A package for quantifying enzyme activity using fluorogenic substrates adsteen enzalyze2 S3 version of enzalyze package to analyze enzyme kinetics adsteen fluorr R code to process 3D fluorescence spectroscopy data adsteen genomechop chops genomes adsteen gradr R package to facilitate grade curving adsteen lmstats function to provide vector summary output of lm adsteen loadallfail R package that exists as a minimal reproducible example for a StackExchange question adsteen metabalize An R package to work with metabolomic LC-MS/MS data adsteen metafluxr a small package used to calculate fluxes of metabolites in isotope labeling experiments adsteen subspec Code to reproduce data from Steen et al (2015) AME on peptidase substrate specificity adsteen testimport package for testing package building advance0921 ribotool advdatamgmt adm adviso RAdwordsPlus Improvements over the RAdwords package. adw96 CatchAll Species richness estimation in R adw96 breakaway Species richness with high diversity aedin KidneyCancerSubtypes aedin RCourses aedobbyn dobtools R package for analysis helpers aejensen CoxCACE CoxCACE aejensen GTC R implementation of the game "Guess The Correlation" aejensen TruncComp Comparison of truncated continuous data aelhabr ercotr An R package aelhabr tedev An R package for "in-development" functions for my other package teutils aelhabr temisc #rstats R package for my miscellaneous functions aelhabr teutils Personal R package aertslab AUCell AUCell: score single cells with gene regulatory networks aertslab GENIE3 GENIE3 (GEne Network Inference with Ensemble of trees) R-package aertslab RcisTarget RcisTarget: Transcription factor binding motif enrichment aertslab RcisTarget.hg19.motifDatabases aertslab RcisTarget.mm9.motifDatabases aertslab SCENIC aertslab iRegulon af12066 nfreadbin R package aflaherty13 prob aforren1 multimles Worked examples of MLE in R, as a package. The vignette can be viewed at https://goo.gl/r4iEzF afortuny SustainableDevelopment afuergut Lab3Show Simons explanation afuergut lib4af afuergut lib5af afuergut lib7af afukushima DiffCorr afukushima MSEAp Metabolite Set Enrichment Analysis (MSEA) for metabolomics community afukushima Solanum.lycopersicum Annotation package for the Solanum.lycopersicum object afukushima TxDb.Slycopersicum.itag2.4.genemodels a TxDb object of tomato from ITAG2.4 gene models afukushima org.Slycopersicum.eg.db organism package for tomato by makeOrgPackageFromNCBI() afukushima org.Slycopersicum.kozo.db MODIFIED Genome wide annotation for Solanum lycopersicum afwillia AWRstudioAddins Addin functions for Rstudio agalecki BBG.Rnw agalecki atgutils Utility functions for internal use agalecki fanno For internal use agalecki traceR Tracing execution of R functions agalecki utilsag agamat agamat.github.io agamat creditRisk agamat dsetimeseries Dataset and functions for times series analysis on Dhaka Stock Exchange. agamat dsetimeseriesR agaveplatform r-sdk Official R client SDK to the Agave Platform -- EARLY ALPHA agaye ESPRESSO.E agaye ESPRESSO.ExE agaye ESPRESSO.G agaye ESPRESSO.GxE agaye ESPRESSO.GxG agaye ESPRESSO.LD agaye ceeComp An approach for assessing agreement between cost-effectiveness estimates based on multiple sources of data agbaca twitteR agentlans CorTools Tools for permutation tests on correlations and regressions agentlans KneeArrower R package to find cutoff points on knee curves agentlans PeakSorter aghozlane shinyWidgets agi0917 AZNASN Source repository for course Applied Statistical Methods in Animal Science @ ETH agi0917 AlternativeSplicingDocu Docu project on alternative splicing agilebean comfort Utilities for plot, survey analysis, data wrangling agisga FDRcorrectedSCCA FDR-corrected sparse canonical correlation analysis agisga grpSLOPE Group SLOPE (Group Sorted L1 Penalized Estimation) agisga grpSLOPEMC Monte Carlo methods for Group SLOPE agnieszkabaranska PSO Perform particle swarm optimization algorithm agoldst agoldst.github.io agoldst dfrtopics An R package for exploring topic models of text agoldst hugormd R markdown output format for Hugo agoldst litdata Support files for Literary Data: Some Approaches agoldst mlaibr An R package for exploring data from the MLA International Bibliography exported to RIS format agoldst scuro R markdown format and template for dark-on-light beamer presentations--with fussy extras. agosiewska AGmisc Miscellaneous functions. agricolamz AssignmentCheck agricolamz lingcorpora.R API for linguistic corpora agricolamz lingphonology R package for automatic phonological report generation agricolamz lingtypology R package for linguistic cartography agroimpacts caca1 Assignment1 agron590-ISU agron590demo R package demonstration agrueneberg crochet An implementation helper for [ and [<- for custom matrix-like types agrueneberg subsette An implementation of [ for custom matrix-like types agstn CRANsearcher RStudio addin to search CRAN packages titles & descriptions agstudy changereview agstudy dplyr.sqlserver SQL Server source driver for dplyr agstudy md md agstudy pinnacleapi Get and Post data via the pinnaclesports.com API agstudy rpivot Create Interactive pivot table the JavaScript 'orb' Library agstudy rsqlserver Sql Server driver database interface (DBI) driver for R. This is a DBI-compliant Sql Server driver based on the System.Data.SqlClient. agstudy scattergrid extenstion to scatterplot3d package. agstudy shinymod Create a modular shiny application agstudy stic agstudy tempo_repo agusdon fars agusdon fars-2 ahardisty dstrain aharmer pathtrackr An R package for video tracking and analysing animal movement aharmer trailblazr ahasverus SampleSim An R package for estimating sample size effects in stable isotope mixing solutions ahasverus argostools R Package to store and handle Argos locations ahasverus geographr An R package to have fun with geography ahasverus orthomap Create a World map in orthographic projection with R ahasverus rscimap An R package to clean words and references in bibliographic citations ahasverus samplesim An R package for estimating sample size effects in stable isotope mixing solutions ahaym wchonors ahb108 rcarbon Methods for calibrating and analysing radiocarbon dates ahb108 settler Spatial and computational models of human settlement ahdvnd Ginidecomposition Gini Decomposition Function using Bhattacharya and Mahalanobis (1967) Method ahdvnd crsra A package for cleaning and analyzing Coursera on-demand data ahdvnd moocr Mooc ahdxb data.exploration Custom R package for data exploration ahfoss discClust ahfoss kamila An R package for clustering mixed-type data ahfoss pkbc ahfoss pkbd ahgroup DSAIRM R Package - Dynamical Systems Approach to Immune Response Modeling ahmademad mergev Provides a verbose option to merge function in R ahmademad wCorr Computes weighted correlations ahmedmohamedali eikonapir ahmetz oncoPrintr R package to generate onco prints of genomic and clinical data of patient cohorts ahoho stringformattr Dynamic String Formatting ahopki14 immunoSeqR An R package for analyzing TCR sequencing data ahopki14 tcrSeqR An R package for analyzing TCR sequencing data ahornero alternatives Alternative functions to make R even easier ahornero rsensing Remote Sensing and GIS tools for R ahproctor LC50 estimate ahubb40 varImpact Function for Variable Importance ahunteruk RNeat RNeat - Neuroevolution of Augmenting Topologies (NEAT) - Genetic neural network evolution ahvigil featuR R utilities for dealing with FEATURE data ahvigil leaves Tools for looking at Random Forests and other tree based modeling approaches ahvigil randomForest Classification and regression based on a forest of trees using random inputs. ahwbest DR4PL Dose Response Relationship Analysis ahwbest dr4pl Dose-Response analysis using the 4 Parameter Logistic model ahwbest drra Dose Response Relationship Analysis ahy1221 CRCTools ahy1221 abort Ahy BiOinformatic R Toolkit aidandmorrison UtilsQQ Some tools for accessing data from public sources aidanmacnamara epiChoose Data-driven selection of cell line models and epigenetic comparison across cell types aidaylanan SAfeR aihpos carddeck R Package aihpos drinkingage R Package aijordan murphydiagram2 aiminy 3UTR-Seq aiminy AtacSeq aiminy ChipSeq aiminy GOSJ GOSJ aiminy MAD aiminy ModifiedDOSE aiminy ModifiedclusterProfiler aiminy NetPathMiner aiminy PathwaySJ aiminy PathwaySplice aiminy RNGS aiminy SRA-data-submission aiminy Sophia aiminy aiminy.github.io aiminy goseq_test aiminy pdb2002 A repository for protein structure data analysis aiminy testNew aiminy use-emacs ainaimi pgf pgf: R implementation of the parametric g-formula aiorazabala qmethod R package to analyse Q methodology data airbornemint outbreak-inference Stochastic modeling of non-linear characteristics of infectious disease outbreaks airbornemint outbreak-predict Stochastic modeling of non-linear characteristics of infectious disease outbreaks airoldilab sgd An R package for large scale estimation with stochastic gradient descent airoldilab stat221 Example package for Stat 221 ajank Romulus Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data ajaygautam95 HP R - package ajdamico cpsbasic ajdamico lodown locally download and prepare publicly-available microdata ajdamico yrbss ajdm morgenstemning ajdm travisreleasetest ajfedorec autoGate Initial code ajfedorec wavelength2colour ajharry msiCompare *in development* msiCompare is an R package for statistical testing of mass spectrometry imaging data. ajhmohr datadictionary ajinkyaghorpade walkscoreAPI Modification to walk score api for fetching bike scores in json format along with walk and transit score. ajohns24 IMApkg ajohns24 MacBayes ajparsons everypoliticianR R library for accessing data from everypolitician.org ajpelu auxiliar Auxiliar R functions (miscellaneous) ajpelu respine ajpete testPackage ajpete toyPackage ajrominger pika an R package for macroecology ajrominger socorro a package of helper functions for R ajschumacher gogr R package connecting to gog ajschumacher questionmarkdown ajschumacher rjstat read and write JSON-stat with R ajsmit RmarineHeatWaves R Translation of the Python Marine Heat Waves Scripts (see Hobday et al., 2016). akeyel behlpr Not intended for public use. Helper files for an analysis I am running on Biodiversity Exploratories data. Using git to transfer files and maintain version control and am too cheap to pay for a private account! akeyel multirich Development version of the multirich package (last stable version available on CRAN) akeyel myr Miscellaneous R functions that I wrote & expect to use on a regular basis. Probably all of them can be found in base R or in existing packages! akeyel spatialdemography A spatially-explicit metacommunity model for R akhtarh ICCbin An R Package Facilitating Clustered Binary Data Generation, and Estimation of Intracluster Correlation Coefficient (ICC) for Binary Data akilahmd Knapsackpackage Knapsack problem akilahmd RWebApi Google geocode api akilahmd Rdata akinori-ito kana2phone R package that converts a katakana string into phones akinori-ito tinyDP A fast dynamic time warping akinori-ito vadeR A voice activity detetion function for R akirocode beeboler R API for https://beebole-apps.com akirocode tblCrud R package: enable crud system for data.frame akitod dPCRMKM Digital PCR mutation calculation program by modified k-means clustering algorithm akivab2 Analyze4CPackage Program for the purpose of analyzing any 4C sequencing data aklxao2 SDEFSR R package for Subgroup Discovery algorithms with Evolutionary Fuzzy Systems aklxao2 SDR R package for subgroup discovery algorithms aknutas nails-package R package version for the nails software akondrashov96 rusmaps An R package for map creation akonstor mypackage akonstor mypackage_v2 akopich covcp R package for change-point detection in covariance structure akreutzmann trafo akrmenec Effic_R_bk akrmenec efficient-R aksarkar frea-R Functional Region Enrichment Analysis akshatshah14 Machine-Learning-Project Create a package and create functions to calculate mean,median akshayayadav Team8 akshaychhabra mutate The repository contains a set of functions implementing the "mutate" methodology (Chaturvedi, 2015) akzaidi SparkR R API for Spark. Fork from Apache Spark 1.6 Release al2na R-mix al2na methylKit R package for DNA methylation analysis alaindanet jury Vérifier la validité de la composition de son jury de thèse alan-turing-institute network-comparison An R package implementing the NetEMD and NetDis network comparison measures alanarnholt BSDA R package for "Basic Statistics and Data Analysis" web page: https://alanarnholt.github.io/BSDA/ alanarnholt Experiment alanarnholt PASWR PASWR R Package --- web page: https://alanarnholt.github.io/PASWR/ alanarnholt PASWR2 PASWR2 R Package - web page: https://alanarnholt.github.io/PASWR2/ alanarnholt PDS R package with Data sets for Passion Driven Statistics---Web page: https://alanarnholt.github.io/PDS/ alanarnholt simplemathr Simple Math Stuff - Proof of Concept alanhuebner10 NDPerfSci.Draft1 1st draft of R package for Notre Dame Performance Science Analytics group alanlucero InfrontConnect alanlucero infrontapi.r Prototype of Desktop API for R alarconvv geocleaMT An R package to cleaning geographical data from electronic biodatabases alasdairhunter EuropeanRiskIndex Functions to calculate the user defined indices in Magic WP7. alasdairhunter HazardLossModel Functions for sampling from an event loss table (analagous to a credit risk portfolio) which allow for the clustering of extreme events. alasdairhunter MagicWP7 Functions to calculate the user defined indices in Magic WP7. alasorous futilityOC Futility analysis operating characteristics alasorous samplesize alastair-JL AnthroTools Some R tools for use in Anthropology alastair-JL StochasticCIB A Collection of R things for CIB analysis alastair-JL stat540-2014-JL-Alastair alastairrushworth smnet alattuada GeDS alb202 PACER PACER project in R albertbuchard CWAnalysis First Commit albertbuchard r-pipeline Robust workflow for data analysis in R albertferre match-mergeR alberthkcheng RacingR alberthkcheng funnelD3 D3 JavaScript funnel plots for R albhasan RoughSetKnowledgeReduction Simplify decision tables using Rough Set Theory albhasan blissR albhasan cqmaTools Tools for managing the data flow at the Center for Chemical and Environmental Technology (CQMA) of the Brazilian National Institute for Space Research(INPE) albhasan eotsfilter Wrapper of filter for time series of Earth Observation data albhasan mapAccuracy albhasan rfields Implementation of Fields as a generic data type for big spatial data albhasan rsstd R scripts for the figures and examples from the book: STATISTICS FOR SPATIO-TEMPORAL DATA by Cressie and Wikle 2011. No relationship with the authors neither the publishers albhasan rwtss R client for WTSS service albhasan scidbutil R util functions for SciDB array database to handle imagery albinsalazar mypackage albuja electoral Seats allocated aldrake87 TfL.Palettes A package to provide colour palettes for use in plotting etc ale19a Team-E aleDsz pagarmeR Pagar.me's R API aleDsz rarframeworkR RAR Framework in R alec25 smif alec25 smif.package Source and store R functions for use by the SMIF Risk and Asset Allocation team. alecri dosresmeta Performing multivariate dose-response meta-analysis alecri hetmeta aleczwart PolyPatEx Paternity Exclusion in Autopolyploid Species aleczwart asremlpvp Plot asreml model variance parameters aleczwart scriptmapr Plot locations of object references in an R script. alede379 lab6 Lab 6: Algorithms and computional complexity alejandro-sotolongo PaperbackInvestmentsPackage alekrutkowski AlphaPipes R package providing named magrittr-style pipe operators alekrutkowski RStataLink Tools for calling Stata from R interactively alekrutkowski cacheflow Simple cached workflow with graph alekrutkowski clojR Clojure-inspired functions (macros) in R alekrutkowski eurodata R package for fast and easy Eurostat data import and search alekrutkowski gentest R package for generative property-based testing with automatic doc generation alekrutkowski wiod.diagrammer R package for an easy work with WIOD (the 2016 release) including diagramming (flowcharts) aleksandar-spasojevic BacktestIndicators A R package for backtesting financial indicators with an easy plot functionality aleksandar-spasojevic BayesXShinyApp A shiny app for BayesX aleksandar-spasojevic bootTimeInference Robust performance hypothesis testing with the Sharpe ratio aleksandar-spasojevic rendertable custom rendertable for shiny alemiani explora Explore and visualize data alenxav NAM alespouzar SilverPopR A R wrapper around SilverPop API. alessandrobessi disparityfilter R alessandrogirelli homeworkpackage my package containing the following functions: save_as_csv, my_csv_reader, multi_excel, draw_names, draw_a_name alex-robinson myr My R! alex-sbu CPBias alex-www-marketing ryandexdirect_edit alex23lemm farsR Course project for Coursera's Building R Packages class alex23lemm pmmlExtensionr Generate PMML for R models which are not supported by the standard pmml package alex2905 coursera coursera course mastering software development in R alexWhitworth concord alexWhitworth emclustr R Package for clustering via EM algorithm alexWhitworth glmEnsemble alexWhitworth imputeMulti imputation methods for p-dimensional multinomial data alexWhitworth synthACS alexander-poon alexandeR A personal R package alexanderbates catnat alexanderbates deformetricar R wrapper for deformetrica registration tool alexanderlange53 SVAR_Identification_Package R Package for data driven SVAR identification of impulse response functions alexanderlange53 svars R Package for data driven SVAR identification of impulse response functions alexanderrobitzsch CDM Cognitive Diagnosis Modeling alexanderrobitzsch LAM Some Latent Variable Models alexanderrobitzsch SRMData alexanderrobitzsch STARTS Functions for the STARTS Model alexanderrobitzsch TAM Test Analysis Modules alexanderrobitzsch immer Item Response Models for Multiple Ratings alexanderrobitzsch mdmb Model Based Treatment of Missing Data alexanderrobitzsch miceadds Some Additional Multiple Imputation Functions, Especially for 'mice' alexanderrobitzsch sirt Supplementary Item Response Theory Models alexchouraki ProjetAlex alexchouraki assignment alexcohan RCAMx R library to read in CAMx binary data files alexcritschristoph PolychartHTMLWidget An HTML Widget wrapper for the Polychart library. alexd16 rtest alexdulin MCmrp Morning Consult's tools for Multilevel Regression and Poststratification alexdulin emailR Send fast emails with R. alexdulin expressR Create Node.js Express applications with R alexdum RepData_PeerAss1 alexdum RepData_PeerAssessment1 alexdum climatetools alexdum reproducible_research alexdum scpdsi alexey0308 selectex alexfou asd alexfou r-test alexfou testP alexgenin miscutils Misc helper functions for R alexgenin rollply A rolling-window add-on to plyr alexhallam ggeats Themes for various restaurants alexholcombe mixRSVP alexhunziker GrowingSOM Implementation of Growing Self Organizing Maps in R alexhunziker gsom_r Implementation of Growing Self Organizing Maps in R alexiaaslan teste teste alexisblackbird R-Survival A to-do & self-care based survival game alexisblackbird personal.utilities alexisblackbird rsurvival A to-do & self-care based survival game alexjgriffith CCCA alexjgriffith homeRhelpeR A set of R functions to help with Homer 2 alexjgriffith kmerhmm Wong et al's 2013 method implemented in R and applied to ChIP Seq alexjgriffith mT1 Motifs in Tandem with One Another alexjgriffith mulcal Test R Package alexjgriffith within %within% infix function for R `aInB <- a %within% b` alexjweil integrateIt alexkowa VIM This package introduces new tools for the visualization of missing and/or imputed values, which can be used for exploring the data and the structure of the missing and/or imputed values. Depending on this structure of the missing values, the corresponding methods may help to identify the mechanism generating the missings and allows to explore th… alexkowa VIMGUI This package introduces new tools for the visualization of missing and/or imputed values, which can be used for exploring the data and the structure of the missing and/or imputed values. Depending on this structure of the missing values, the corresponding methods may help to identify the mechanism generating the missings and allows to explore th… alexkowa rjdemetra R package for Jdemetra+ jars alexkowa sdcMicro sdcMicro alexkowa sdcMicroGUI sdcMicroGUI alexkowa sparkTable sparkTable: Sparklines and graphical tables for tex and html alexkowa x12 The R package x12 alexkowa x12GUI The R package x12GUI alexkychen AlexPackage alexkychen GDS0210 alexkychen assignPOP Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework alexmarzel svisits alexmasselot REurostats alexmasselot alexmasselot.github.io alexmomeni homework alexnakagawa conversionr R package for converting between basic metric units and imperial units alexology WFDItalia A collection of functions for calculating the italian STAR_ICMi index based on macroinvertebrate community. alexology biomonitoR A package for calculating indices for biomonitoring of running waters with a focus on macroinvertebrate community. Still in development. alexpavlakis maxdiff alexpavlakis opencsv function to open csv alexpavlakis rcpR scrape and format polling data from realclearpolitics.com alexpavlakis woRdgames alexpenson STAR.DEXSeq alexperrone truss The k-truss clustering algorithm. alexpghayes choosy playing with multinomial logistic regression alexpghayes formulize generate formula and recipe wrappers for modelling functions alexpghayes hayeslib personal utility functions and some experimentation with an R package alexplatasl reverseGeo An interface for the reverse geocoding service by Google Maps Geocoding API's. alexploner GeneCorrAtlas An R wrapper for the genetic correlations provided by Bulik-Sullivan et al. alexploner Heatplus Annotated heatmaps for R & Bioconductor alexploner R.HDSS R package to process HDSS demographic data from the INDEPTH project alexploner VEGAStools Basic manipulations of VEGAS gene lists alexrecuenco TexExamRandomizer R package, randomizing LaTeX exams alexsanchezpla AnovaTools Paquet per estendre l'ANOVA d'R a alguns models d'efectes aleatoris alexsanchezpla goProfiles an R/Bioconductor package for the statistical analysis of functional profiles alexsanchezpla links2File alexsanjoseph compareDF R Tool to compare two data.frames alexvpickering authr User management for R web-apps built with handlr alexvpickering ccdata alexvpickering ccmap alexvpickering crossmeta alexvpickering handlr handler for rApache http requests alexvpickering rd3server R backend for rd3 alexwhan asremlpvp Plot asreml model variance parameters alexwhan beadplot alexwhan biokangr alexwhan genomap alexwhan guilloche alexwhan mpplot alexwhan pointillist A pointless exercise in ggplot2 aRt alexwhan shiny alfcrisci biometeoR Rcpp package for biometeorological functions alfcrisci rAedesSim R package for Aedes Albopictus modeling alfcrisci rBiometeo R V8 js package for biometeorological functions alfcrisci rClimSeasForecast Watch alfcrisci rHeatWave R package to detect and classify days in meteorological time series. alfcrisci rTwChannel R package for twitter stream analitics alfcrisci rWeatherITA R package for daily weather data retrieval. algoquant HighFreq R package for high frequency time series data management algoquant rutils Utility functions for simplifying financial data management and modeling algorithmiaio algorithmia-r algutier1 rwfec algutier1 rwirelesscom algutier1 rwirelesscom2 alhoqbani firstr alhoqbani rSaudiregions a dataset for R contains all Saudi cities aliaksah EMJMCMC2016 package with mode jumping MCMC for Bayesian variable selection and averaging within GLMM alice-szeliga keles-pipeline eQTL analysis pipeline for IBS-SRP program alicebalard ParasGrad R package to follow parasite load in hosts over a gradient alicebalard Parasite_Load Parasite load / parasite prevalence across HZ. Adapted from S. Baird. alicebalard Rparasite R package to follow parasite load in hosts over a gradient aliceyiwang mvabund mvabund updates aliciatb fars US National Highway Traffic Safety Administration's Fatality Analysis Reporting System, which is a nationwide census providing the American public yearly data regarding fatal injuries suffered in motor vehicle traffic crashes alightner dataAMT2017 alightner framingdata2017 alinaselega BUMHMM BUM-HMM is a statistical modelling pipeline for interpreting high-throughput RNA structure probing data. alingir ReqPred No description or website provided. alingir canavr No description or website provided. alirobin homework2 alishinski AutoModel R package for running hierarchical regression models alishinski clustRcompaR alishinski dbn Modifications to the G1DBN R package alishinski graphPlot R package for plotting graphical models easily through DiagrammeR alishinski lavaanPlot R package for plotting lavaan path models with DiagrammeR alishinski partpaircompare New R package for partially paired data comparison methods alistaire47 passport Travel smoothly between country name and code formats alixisan3 test_diceroll01 alj1983 MaxentVariableSelection R package for Selecting the best set of relevant environmental variables along with the optimal regularization multiplier for Maxent Niche Modeling alkalait gprege Gaussian Processes for the Ranking and Estimation of Gene Expression alkalait gptk Gaussian processes tool-kit: An R package for GP regression. alkc spectrawizreader An R package for reading Spectrawiz spectral data files alketh advancedr alketh atlantistools atlantistools alketh ecocat alketh letstrythis letstrythis alketh seriespicker alko989 s6model Data-poor fish stock assessment using the single species, size structured, steady state model alku86 SensMixed Analysis of consumer and sensory data within a mixed effects model framework alku86 lmerTest Tests in Linear Mixed Effects Models allanhicks Ensemble Functions for working with and combining ensemble models allanjust aodlur Functions to assist in land use regression using aerosol optical depth allansales ad1 allenaven aar My own frequently used R functions and datasets allenaven ungate-pdf allengoebl iopsych The R package iopsych: Methods for Industrial/Organizational Psychology allenhuang97 CharRecog allenzhuaz FixSeqMTP Fixed Sequence Multiple Testing Procedures allenzhuaz MHTdiscrete Multiple Hypotheses Testing for Discrete Data allenzhuaz MHThier Multiple Hypotheses Testing for Hierarchical Data allenzhuaz MHTmult R package MHTmult: Multiple Hypotheses Testing for Multiple Families Structure alletsee pricesensitivitymeter van Westendorp Price Sensitivity Meter (PSM) implementation in R allgenesconsidered CardiacPeakFinder Data analysis with GcAMP Cells allgenesconsidered RCaMP Peak calling and data analysis with GcAMP data allr rcov Coverage tool for R allr testr testR implementation in R allswellthatsmaxwell multidispatch Ease multiple dispatch polymorphsim in R almartin82 MAP-visuals R resources for NWEA MAP data almartin82 NYSEDtools Tools for working with New York State Education data exports almartin82 mapvizieR almartin82 mlbids almartin82 njschooldata a simple interface for accessing NJ DOE school data in R almartin82 nyschooldata a simple interface for accessing NYS ED data in R almartin82 parccvizieR data analysis tools for the PARCC assessment almartin82 projection_prep No description or website provided. almartin82 projprep a R package that helps read, clean up, and convert baseball projection data into auction prices. almartin82 rv2alm demo package from hadley's class on R development almeidaxan ggQqLine A quantile-quantile line geom to be used with ggplot. almlab texmexseq Treatment Effect eXplorer for Microbial Ecology eXperiments almus-bot tweetstat tweetstat is an R package to resume tweet's info and perform sentiment analysis. alnever osdata alohr ezr alokApps rTime Change time of day(24 hour format hhmm) to minutes and minutes to time of day (hh:mm). alona-sydorova asyt alondhe CohortComparison alondhe MPHThesisPAD R package to run PAD comparative effectiveness study alondhe MotherChildLinkage Links mothers and children in CDM claims databases, using pregnancy episodes and family identifiers alondhe PPMD alondhe PhenotypeCharacterization Phenotype Characterization functions used in the OHDSI F2F 2017 alondhe PregnancyAlgorithm alondhe RoseshoreREST REST APIs for Roseshore ETL aloy HLMdiag R package providing diagnostic tools for multilevel models aloy lmeresampler R package for resampling multilevel models aloy math107-lu.github.io aloy math207 aloy modernregressiondata aloy qqplotr aloysius-lim bigrf Random forests for R for large data sets, optimized with parallel tree-growing and disk-based memory alphajuliet ajworkr R utility functions alphatobeta tidydata alphonse aeRo Tools for Aerosol Optics alq666 rdog Interfacing R and Datadog alramadona PDS-R alramadona denfor Dengue forecast alrobles geotax alrobles maxnetmap This package plot a raster from a spatial distribution model fitted with glmnet via maxnet package alspur collegescorecardr alspur kydistgeo Boundaries of KY school districts alspur kysrc Data from Kentucky's School Report Cards website alspur marblr alspur predict_method alstat ALUES Agricultural Land Use Evaluation System alstat StochMCMC.r Stochastic Gradient Markov Chain Monte Carlo in R alstat alasaad New Repo alstat face or alstat rface alstat stcor Correlograms of Space-Time ARIMA altaf-ali batman altaf-ali installdeps Install Dependencies altaf-ali nightlight altaf-ali phoenix_tracker Phoenix Tracker altaf-ali ravenr A Sentry client for R altaf-ali regsim Regression Model Simulations altaf-ali tidydata_tutorial Data Manipulation in R altairengineering CarriotsAnalytics Public Repo for CarriotsAnalytics; Owner=Shashidhar Lakshminarayana altayg ganet ganet_2.2 alteryx AlteryxPredictive This is an R package containing utility functions used by the predictive tools in Alteryx. alteryx AlteryxPrescriptive R Package for Optimization in Alteryx alteryx AlteryxSim R package for Simulation in Alteryx alteryx DataAdviser alteryx flightdeck Interactive Dashboard for Predictive Models alteryx jeeves A sagacious valet to build and maintain predictive tools in Alteryx. alteryx promote-r-client alumbreras generative-discussion-threads-tutorial A tutorial about generative models for discussion threads in online forums alumbreras rlumbreras An R package with miscellaneous helpful functions that I use regularly alvarofranq piecewise An R package to manage piecewise models alxguasch PackageBCN Package de R per la Practica de Data Mining alxguasch PackageBCN2 PackageBCN2 alxsimon rfss Package of helper function for Fisher Stepping Stone outputs. alyssafrazee RSkittleBrewer for those times you want to make plots with candy-themed color schemes alyssafrazee ballgown Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R. alyssafrazee ballgown-release release version of "ballgown" Bioconductor package alyssafrazee cards fun with cards in R alyssafrazee polyester Bioconductor package "polyester", devel version. RNA-seq read simulator. alyssafrazee polyester-release release version of "polyester" Bioconductor package alyssafrazee read.csv.sql The "read.csv.sql" function (from R's sqldf library), without the Tcl/tk dependency! alyssafrazee usefulstuff miscellaneous R functions I've found useful alyst MotIV This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs. alyst RpsiXML Temporary unofficial fork of RpsiXML Bioconductor package alyst dagLogo Visualize significant conserved amino acid sequence pattern in groups based on probability theory (my fixes). alyst proteowizard am-consulting ID005 am-consulting performanceAsLeader amaendle mvInterpolation amakhija odds-2 amandafaig catchfunction BSAI catch function, for ACLIM use only amanosalva ByteAnalyticsUtils Funciones que facilitarán el análisis de datos. amarder piwikr Web Analytics for Hackers amarder powerstan Power analysis via simulation with Stan amarjen pwt9 PWT9.0 Dataset amarjen tradercuantico.github.io amatsuo kaigiroku amattioc SDMX SDMX Connectors amaurel rtercen Tercen R api amayer2010 EffectLiteR R package for analyzing average and conditional effects amayer2010 lavaanGUI shiny application for lavaan amayer2010 lsttheory R package for latent state-trait models amberalpha aa010util amberalpha aace0 covariance - combo of aace and aa040co amberalpha toypkg ambiata classifierplots Generates a visualization of binary classifier performance as a grid of diagonstic plots with just one function call amboseli ramboseli An R package for the Amboseli Baboon Research Project amcat amcat-r R bindings and utility functions for working with AmCAT amcdavid HurdleNormal Estimation and sampling for multi-dimensional Hurdle models on a Normal density with applications to single-cell co-expression amcdavid PenultimateGEXContainer Penultimate gene expression container: An interface for interchange of gene expression data amcdavid SingleCellAnalysis Tools for Analysis of Zero-Inflated, Continuous Data amcdavid ZeroInflatedMM Multi-level models and simulations for zero-inflated data amd112 rseiAnalysis ameliemeurer premierpackage Package avec les fonctions vues en cours ameshkoff amdata ameshkoff amnlp ameztegui Plasticity An R package to determine several plasticity indices, as in Valladares et al. 2006, Journal of Ecology amgunawa CyTOF_CBM Calvarial Bone Marrow amignan rseismNet Earthquake Frequency-Magnitude Distribution & Network Statistics amilleranalytics rempreq rempreq: an R package for estimating the employment impact of US domestic industry production and imports aminadibi epicR R package for Evaluation Platform in COPD (EPIC). Under development. aminadibi vancityhome aminfathullah saeme R package for small area estimation with measurement error aminondo iX-Rpackage An R package for unit conversion amirbenmahjoub Package_DM Package training amirbenmahjoub wifiparis_package WifiParis is a R project based on the Paris public wifi connexion data from the Paris Open Data initiative. This package includes a cleaned version of the dataset & dataviz functions that were embedded in this shiny app. amirms GeLaToLab A collection of visualization tools and algorithms for data analysis and machine learning focused on source code analysis amirms ITM Interactive LDA amirms ITMViz Interactive Topic Modeling for Source Code Analysis amirms MultiViz A shiny application for demonstrating multi-view clustering of software systems amkusmec FarmCPUpp Perform GWAS using the FarmCPU model. ammaciel lucC Land Use Change Calculus - lucC ammaciel sits.LUC.Calculus Land Use Chance Calculus with GeoTIFF data - sits ammaciel stilf Spatial-temporal Interval Logic Formalism ammeir2 PSAT A software package for performing inference after aggregate testing ammeir2 hhglm An undocumented and unreliable toolkit for fitting linear models when the noise distribution is heteroskedastic and heavy tailed ammeir2 postest A package for performing valid statistical inference after aggregate tests. ammeir2 selective-fmri selective inference for fmri datasets and other interesting problems. ammeir2 selectiveReg ammeir2 selectiveTweedy A package for performing selection correction using Tweedy's formula when only the selected are observed ammeir2 variationalReg ammhd farsFinal amoeba eatocsv Download and extract Entity-Attribute metadata into a CSV amoeba rt RT package for R amolmane1 StandardDeviationR amolmane1 Test amoloudi R-PKG-Distributions Some Distributions in R package amolz AnalyzeFatalities ampaho givennames R package for given names data set in the US and around the world ampaho imagine R package for image manipulation (resize, crop, format conversion, rotation) and animation creation ampatzia pasaR Pangenomic Statistical analysis in R (pasaR) amrei-stammann alpaca An R-package for fitting glm's with high-dimensional k-way fixed effects amrrs coindeskr Access Coindesk API in R amrrs coinmarketcapr R package to get Cryptocurrencies Market Cap Prices from Coin Market Cap amrrs haikunator Generate Heroku-like Random Names in R amrrs itunesr R Package to access iTunes App Store Ratings and Reviews amsantac SkyWatchr R wrapper for the SkyWatch API amsantac TOC TOC R package amsantac diffeR diffeR R package amsantac geospt geospt R package amstilp GWASTools amun-software Processingservice amurali2 PackageTest Test R package amurali2 Storm-Data-Publication amurali2 cats cats amvallone DataSpa Functions to collect Spanish data at municipality level amvallone msp amvallone spDym spDym Spatial Dynamics analysis in R with Python implementations amvillegas BayMoMo Bayesian Mortality Modelling amvillegas StMoMo Stochastic Mortality Modelling amw6022 group4_project STAT 297 IMDB Movie Data Project. amw6022 inclassdemo297 STAT 297 amwill04 i2c amyarneson crasch amyarneson crasch-materials amycook hashtag amywleung svir Amy and Max's final R project. anabeloff AODPvisual anacv HeatStress Heat Stress indicator for HeatShield anadromous-data fishpassagecenterr R package for the Fish Passage Center anaislaot optiMod anaislaot optiPlus analyticalmonk PRDemo_Rperform Demo for Rperform integration with Travis and especially PR builds analyticalmonk Rperform :bar_chart: R package for tracking performance metrics across git versions and branches. analyticalmonk RperformTestPackage Test and Demo package for Rperform analytics-ufcg bestBus analytics-ufcg busminer R package to match trajectories created from bus GPS locations to bus stops locations found in GTFS. analytics-ufcg geopbutils analytics-ufcg gps.stops.matcher R package to match trajectories created from bus GPS locations to bus stops locations found in GTFS. analytics-ufcg rcongresso Pacote R para acessar dados do congresso nacional. analytics-ufcg rsagrespb Pacote que permite filtragem de licitações e outros documentos públicos para a base de dados do SAGRES (TCE-Pb). analyticsbicc VPBank VPBank package analyxcompany ForceAtlas2 This is the R implementation of the Force Atlas 2 graph layout designed for Gephi. analyxcompany resolution Finding communities in network using algorithm with resolution parameter ananjysong HMMdmdv R package: Hidden Markov Model for Bayesian Inference of large-scale mean and variance testing ananjysong SCclust Package: Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones anasrana spector R-package to analyse and quantify aberrations in DNA-sequencing data anatolix RStudioViewFix anchored-inversion client.R Example applications of Anchored Inversion in R anchored-inversion examples.R Example applications of Anchored Inversion in R anchored-inversion utils.R R utility functions ancient-dna variogramr andangshide farsfunctions andbucci QPXflight andeek conclique R package containing helpful functions for dealing with spatial data and concliques. andeek forestr Random Forests with a choice of splitting criteria. andeek helloLadies Saying hello to R ladies Ames andeek miniR Example R package for STAT585X andeek rpart A companion package for andeek/forester that adds the itree splitting mechanisms to current version of rpart. andersfi Shiny_TrondheimProvefiske andersfi invafish-sim Simulate translocations and impact of invasive freswhater fish andersgs harrietr An `R` package for various phylogenetic and evolutionary biology data manipulations andersgs irelr An R package that implements the functionality of iRel andersgs maldetectr An R package that implements site occupancy models for estimating malaria prevalence in populations andersgs microsimr microsimr anderslaunerbaek homemade This package consists of useful function from my university time. andi-nl andistats Statistical analysis for ANDI andifrei SafeLanes Test repository andland generalizedPCA Dimensionality reduction for exponential family data by extending PCA andland implicitcf andland libFMexe libFM R package andland logisticPCA Dimensionality reduction for binary data andland nameage Estimate a person's age based on their first name. andraxas tsmodfor Análisis de series de tiempo en Shiny andre-silva B.utils andre-silva Quiz-2 andreabduque gmining Mining Project Gutenberg texts andreabz pbratios R package for extracting and processing Pb isotope ratio data at UNIGE lab. andreaelia pcashinyapp andreaelia pcashinyapp2 No description or website provided. andreamelloncelli RmdScreenshot Provide an RStudio Addin to take a screenshot and put it in the Rmd file. andreamelloncelli dict Dictionary functions for R andreamelloncelli one andreamrau GBNcausal Causal estimation for Gaussian Bayesian networks andreamrau HTSFilter andreamrau RIFplus andreamrau andreamrau.github.io andreamrau coseq andreamrau ebdbNet Infer the adjacency matrix of a network from time course data using an empirical Bayes estimation procedure based on Dynamic Bayesian Networks. andreaphsz betas This is an R package providing functions to compute standardaized regression coefficients - called betas - for different kind of linear models. andreaphsz importar R package to import/load packages or functions the 'Python' way andreas-he cmaesbenchmarking andreaskapou BPRMeth Binomial Probit Regression for modelling Methylation profiles andreaskapou BPRMeth-devel Extracting higher order methylation features - Development version andreaskapou BPRMeth2 BPRMeth devel version andreaskapou mpgex Model Methylation Profiles / Correlation with Gene Expression (testing purposes) andreaskapou processHTS Package to process data generate from HTS technology (testing purposes) andreaskapou simplePackage andreaskiermeier AcceptanceSampling Acceptance sampling R package andreasmock CVE andreasmock MetaboDiff andrechalom TWoLifR An R library For Agent-Based Simulations of Demography in Heterogeneus Landscapes andrechalom pse R package for exploration of parameter spaces andrejadd GWSDAT GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation. andrejadd Shiny_GWSDAT R-Shiny Server for the GWSDAT application. andrekos fars andresfpc AMUN andresfpc KDViz An R package for Knowledge Domain Visualization andrew-hipp RADami RADseq helper R package andrew-hipp morton Tools (in R) for manipulation of phylogenetic, genetic, and other biodiversity data andrew-leroux nhanesdata andrewGhazi bayesianMPRA a fully Bayesian analytical framework using conditional density estimation and genomic annotations to improve MPRA sensitivity and inference andrewGhazi ghzutils A small set of simple utility functions to make life easier in R, RStudio, and the tidyverse. andrewGhazi mpradesigntools A tool for generating barcoded Massively Parallel Reporter Assay sequences andrewbrownphd MetaTurkR WARNING: beta (at best!) - A series of tools to conduct meta research using MTurk. Heavily depends on the awesome MTurkR package. andrewbrownphd centRoidSE Method to calculate standard errors and effect sizes from multiple reported values. andrewbtran abtnicarr state population adjuster andrewbtran muckraker A growing collection of R functions and relationship files for data journalists andrewbtran muckrakr R tools for journalists andrewchay aft-hd R package for calculating regression coefficients in high-dimensional AFT models andrewcparnell Bchron A Bayesian radiocarbon chronology model with R andrewcparnell Bclim An R package for Bayesian palaeoclimate reconstruction from pollen data andrewcparnell auf Andrew's useful functions andrewcparnell simmr A stable isotope mixing model in R andrewdismukes BlogdownIntro Creates an addin for Rstudio that adds custom text to the intro of a blogdown post. andrewdolman baconr An rstan implementation of the Bacon age-modelling software. andrewdolman dwdr Climate data from the Deutscher Wetterdienst (German weather service) andrewdolman ecostattoolkit An R package to implement and test the ECOSTAT toolkit for estimating nutrient boundaries andrewdolman phytotraitr An R data package for phytoplankton traits andrewgeisler GAR R Package: Google Analytics Refresh and Request andrewgeisler Talend andrewgeisler emmaR andrewhaoyu PAV This R package is used to estimate a population averaged value andrewheiss RcmdrPlugin.MPAStats A custom plugin for R Commander andrewheiss byumpa Custom R package for Dr. Nelson's BYU MPA and MBA statistics classes andrewheiss limer A LimeSurvey R Client andrewheiss raddath My custom RStudio addins andrewheiss rath A bunch of useful miscellaneous R functions andrewheiss reconPlots Convenient functions for plotting economics-style supply/demand curves in R andrewholding Brundle R package for the normalisation of ChIP-Seq data using control peaks or spike-in controls andrewholding BrundleData Data package to support Brundle andrewhooker MBAOD Model based adaptive optimal design andrewhooker PopED Population Experimental Design (PopED) in R andrewhooker xpose4 Model building aid for population analysis using NONMEM andrewjdyck CanadianFootball An R package for Canadian Football andrewjdyck Coursera-creating-data-products andrewjdyck Machine-Learning-with-SAS andrewjdyck tidyCFL A tidy data package for the Canadian Football League API andrewjpfeiffer rutilities andrewjpfeiffer timetrackr andrewparkermorgan argyle An R package for import, QC and analysis of Illumina Infinium genotyping arrays andrewparkermorgan genodb R interface to UNC Systems Genetics genotype databases andrewparkermorgan mouser Colour schemes and constants related to mouse genetics andrewparkermorgan multiparental Utilities for exploring, visualising and analysing genotype and haplotype data from multiparental populations andrewparkermorgan sfsr R package for analysing site frequency spectra (SFS) andrewparkermorgan vqtl methods for mapping variance-controlling loci (vQTL) in experimental crosses, compatible with R/qtl andrewpbray ISL andrewpbray UrbanClimate andrewpbray infer An R package for tidyverse-friendly statistical inference andrewpbray lmmoptim lmmoptim andrewpbray oilabs An R package that contains the data sets, custom functions, documentation, and templates for the OpenIntro Labs. andrewpbray trivia-graph andrewraim OverdispersionModelsInR andrewraim tommysampling andrewrech Rech.helper Bioinformatics R helper functions andrewrech antigen.garnish Ensemble neoepitope prediction from DNA variants in R. andrewrech datatable.inflix.operators Additional inflix operators for the R package datatable andrewrech dt.inflix Additional inflix operators for the R package datatable andrewrech immune.ml Machine learning in cancer immunology. andrewrech p.s3 Fast basic AWS S3 R. andrewsali Rlibcmaes andrewsali kaggle andrewsali plotlyBars A module to create plotly bars animation andrewsommerlot getMet Streamline the collection of meteorological data for hydrologic modeling andrewsommerlot startml R package for automatic training and ensembles with deep learning, gradient boosting machines, and random forests. Powered by h2o. andrewthomasjones EMMIXcontrasts andrewthomasjones SAGMM Clustering via Stochastic Approximation and Gaussian Mixture Models andrewthomasjones adtest Anderson-Darling test for R andrewthomasjones logKDE Kernel Density Estimates on (0,Inf) andrewthomasjones lowmemtkmeans R Package Dev andrewthomasjones tkmeans R Package Dev andrewtikhonov ArrayExpressHTS Processing Pipeline for Hihg Throughput Sequencing experiments. Works as an application for R Cloud and in standalone mode. Works on experiments from ArrayExpress Archive / ENA and user data. andrewzm EFDR Enhanced False Discovery Rate andrewzm FRK Fixed Rank Kriging with big data andrewzm IDE Integro-difference equation spatio-temporal modelling andrewzm INLA Copy of INLA repo for Travis CI andrewzm MVST An R-Software package for multi-variate spatio-temporal modelling andrewzm STRbook Supplementary package for book on ST modelling with R andrewzm WRSEL Weighted Rank Squared Error Loss andrewzm atminv Supplement package for papers on atmospheric trace-gas inversion by Zammit-Mangion et al. andrewzm bicon Bivariate modelling using the conditional approach andrewzm dggrids Discrete Global Grids in data frame format for use in R (and Fixed Rank Kriging in particular) andrewzm hmc Hamiltonian Monte Carlo sampler andrewzm linalg Yet another sparse linear algebraic routines package for R, with functions tailored for spatio-temporal modelling and inference with Gaussian Markov Random Fields. andrewzm medalplot An R-Software package for visualising uncertainty in large-scale Gaussian systems andrewzm waveslim andreyshabalin ACMEeqtl Estimation of Interpretable eQTL Effect Sizes Using a Log of Linear Model andreyshabalin MatrixEQTL Matrix eQTL: Ultra fast eQTL analysis via large matrix operations andreyshabalin fastCircularPermutations Very fast circular permutation analysis on binary outcomes andreyshabalin filematrix R package for handling big file-stored matrices andreyshabalin ramwas RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms andreyshabalin shiftR Very fast circular permutation analysis on binary outcomes andrie AzureStorage Interface to Azure Storage API andrie MRANtools R package with tools to query and work with MRAN snapshots andrie RMLtools Helper functions to make it easier to use mxNeuralNet in the MicrosoftRML package andrie SqlRtools Helper functions to work with Microsoft SQL Server R Services andrie SuppDists R package for supplementary distributions andrie TDSP Copy the Azure Team Data Science Process (TDSP) Folder Structure. andrie braid Report generator that uses R to create Latex code for publishing to PDF andrie braidppt Extension of braid to create PowerPoint files andrie gcalendr R package to read events from google calendar andrie ggdendro Tools to extract dendrogram plot data for use with ggplot andrie miniCRAN R package to create internally consistent, mini version of CRAN andrie morar Tools to import data in Morar Consulting's format into [R] andrie mxNeuralNetExtra Helper functions to make it easier to use mxNeuralNet in the MicrosoftRML package andrie pagerank R package to compute pagerank of CRAN packages andrie rfordummies R package to accompany the book "R for Dummies" andrie sendgridR Send email using the sendgrid API andrie sentiment [R] package to perform sentiment analysis andrie spanner A collection of small tools to make life easier in R andrie sss An [R] package for importing files in the triple-s .(Standard Survey Structure) format to R. andrie surveybraid andrie surveydata Tools to manipulate survey data (typically originating from SPSS export) andrie surveyor Tools to process survey data in R andrie surveyortools Additional tools to operator on surveyor objects andrie turf Tools to perform TURF (total unduplicated reach and frequency) analysis in [R] andrie version.compare R package that allows you to run R code in different versions of R and compare results andriizakharov DDMtree Trying to make life easier for DDM modelers (and also writing a Master's thesis) andronekomimi Imetagene Interactive metagene with Shiny andronekomimi ROmix_Imetagene Imetagene for ROmix portal andronekomimi ROmix_shinyTANDEM shinyTANDEM for ROmix andronekomimi SNPVizualTools Suite of R tools for custom SNP vizualisation andronikoss desk androsova NOAA androsova fars andybeeching discern A collection of R helpers to facilitate data analysis andybega spduration Split-population duration model in R andybega states Create country-year/month/day panels consistent with the COW or Gleditsch & Ward independent states lists andyc-rpackage Assignment2 andydisch InfluenceOfRainfall andyjudson rtopojson Package for working with spatial data in topojson format in R. andymckenzie DGCA Differential Gene Correlation Analysis andymckenzie bayesbio Helper functions for bioinformatics and Bayesian statistics. andymckenzie evoDnDs Package that includes the ability to query biomaRt and ensembl to find the dn/ds values for a character vector of gene names. andyofsmeg ggTag A package to allow ggplot2 or lattice graphics to be "tagged" with meta information andyphilips pss R package to perform bounds test for cointegration and perform dynamic simulations. andyyao95 USstocks This package contains a single dataframe which contains the daily stock information, along with some performance indices, for 3085 US stocks from 1998 to 2007. andyyao95 walkr This package implements MCMC random walks in the intersection of the n-simplex and hyperplanes andzajan mzmatch.R aneesrana -r-programming-exam- aneesrana Train-Data-ID aneesrana Train-Data-Test aneesrana coursera-getting-and-cleaning-data-project-CodeBook.md aneesrana datasciencecoursera aneesrana gganimate aneesrana learn-data-cleaning-exam-k2arZ-week-1-quiz aneumann-science LifeEvents aneumann-science molepi molepi aneuraz DWHtools2 R Package to help data extraction and patients matching from clinical datawarehouses. aneuraz JWTroutr JWT authentication for fiery/routr aneuraz multiWAS aneuraz multimodalPhewas angelalica ASTranslation This package serves as an analytical pipeline for determining allele-specific translation. angelesarzalluz scfilters angelgar voxel Functions for the mass-univariate voxelwise analysis of NIfTI data. angelgr2 radseq_tools R pipeline for the exploratory analysis of RADseq data angeloSdP ULPGCmisc Miscellaneous functions for the usual activity of the Mathematics Department members at the University of Las Palmas de Gran Canaria angeloari foolsgold A bunch of misc functions for Ari angeloari register register is designed to solve all of your data tracking needs in R angelobj ASAs angelobj processEMG Análisis de EMG basado en biosignalEMG angelobj revision angelobj tsCoP anghyflawn llafaR R package with data on Welsh vowels angmelanie paulyplots create plots angusmoore absgeoutils Utilities to make working with ABS statistical geographies easier angusmoore arphit RBA-style plots in R angusmoore varHFinstrument R library that implements the high-frequency identification method from Gertler Karadi (and others) for the R vars package angusmoore varexternalinstrument R library that implements the high-frequency identification method from Gertler Karadi (and others) for the R vars package angy89 MVDA_package Multi-view clustering methodology in which the information from different data layers (views) is integrated at the levels of the results of each single view clustering iterations. anhhd VPBank1 VPBank anhinton conduit Prototype R-based glue system for OpenAPI anhinton shirtshufflr An R package for choosing my shirts anhinton worktimr An R package to remind me to stand up from my desk anhoej cprr Functions for working with Danish CPR numbers anhoej qicharts The qicharts package contains functions for plotting run charts and Shewhart control charts for measure and count data. anhoej qicharts2 Quality improvement charts anilchalisey alignr R-based tool for read alignment and filtering anilchalisey dealr Differential Expression AnaLysis using R anilchalisey fqcr R-based wrapper around fastqc anilchalisey parseR parseR: Pipeline for rna-seq analysis in R anilchalisey prana Pipeline for Rna-seq ANalysis using R (PRANA) animalito rformat rformat animalnexus feedr R package for working with data collected from RFID feeder visits ankane rollbar Error tracking for R ankargren kfsmooth ankargren mfbvar R package for Mixed-Frequency Bayesian VARs annafil FFCRegressionImputation Several predictive approaches to imputation using linear regressions and lasso annaheath EVSI Expected Value of Sample Information. A suite of functions for the calculation and presentation of the EVSI, based on a Bayesian Health economic model. annakat casper_defunct annakat spectrolab Essential functions to process spectral data annakrystalli aocodeR annakrystalli pkgreviewr R package to facilitate rOpenSci package reviews. annakrystalli planktonr annakrystalli vBffyR annanormark wherescroc Lab two in AI. annebozack bdayWine annebozack table1 annecori EpiEstim A tool to estimate time varying instantaneous reproduction number during epidemics annecori mRIIDSprocessData annenna4 culturechange anniejw6 metrumrg Automatically exported from code.google.com/p/metrumrg anniejw6 modmarg Calculating Marginal Effects and Levels with Errors Using the Delta Method anniejw6 rsMarg bringing stata into R anon-author clauses anonresearcher fbsample fbsample anonymous-1618 data-products anqif CVXR An R modeling language for convex optimization problems. anqif cvxr An R modeling language for convex optimization problems. anre005 pinbasic R Package for Fast and Stable Estimation of the Probability of Informed Trading (PIN) anspiess reverseR Linear Regression Stability to Significance Reversal (R-package) antagomir RPA Robust Probabilistic Averaging antagomir netresponse Functional network analysis antagomir pint Probabilistic dependency analysis for mRNA and aCGH data antaldaniel iotables Input-output table tools antaldaniel iotools Input-output table tools anthonydn treateffect Calculates and plots treatment effects from manipulative experiments anthonyleezhang alzRtools Tools and utility functions for R anthonyleezhang alzgraphlib Tools and utility functions for R anthonypileggi gradeR Grade assignments using R workspace equivalence anthonypileggi pileggir anthonypileggi typeformR anticoagulation warfarin antiphon BellB Bell polynomial evaluation for R antiphon Kcross Quick second order summaries for multivariate point patterns antiphon Kdirectional Tools for the anisotropy analysis of point location data, also known as point patterns, based on the pairwise differences. antiphon PenGE Penalised Gibbs model Estimation antiphon SGCS Miscellaneous summary functions for spatial point patterns. antiphon ellipsoid Functions for doing stuff with 2D and 3D ellipsoids. Fitting (OLS, WOLS), simulation (biased), some statistics. antiphon glbinc Grouped Lasso (and maybe more) for logistic regression with offsets and sparse matrix support antiphon looptimer Time calculation for loops in R, to get some idea how long I need to wait. antiphon ppmvb In the R-package spatstat there is a function called ppm. This package augments ppm with a Baysian fitting algorithm. antiphon rcox Simulate the Cox point process in 2- or 3-dimensional cube (rectangular cuboid). antiphon rfhc Random field + Hardcore Gibbs model, simulation and MCMC antiphon rstrauss Simulate the Strauss point process in 2- or 3-dimensional cube (rectangular cuboid). antiphon spatgraphs Spatial graphs for spatial point patterns antiphon spatialsegregation An R package of functional summaries useful for analysing multitype point patterns, motivated by biodiversity studies. antiphon sphere 3D point cloud data functions, such as coordinate and rotation transformations and smoothing and plotting on a sphere. antiphon sseg reboot of the old spatialsegregation antiphon vblogistic Variational Bayes Logistic regression antiphon vbss Variational Bayes for spike-n-slab models. antoine-182 shippeoRV2 antoine-sachet R_helper_functions antoine-sachet customFunctions R package containing miscellaneous functions to streamline common tasks antoinechampion optional Optional types and pattern matching in R antoinepari testRRiceTravis antoinestevens MODISExtra Modified version of the MODIS R package antoinestevens copernicus Access and process COPERNICUS Global Land Vegetation products antoinestevens prospectr R package for processing and sample selection for vis-NIR spectral data antongrau MONECA MONECA - Mobility Network Clustering Algorithm antongrau eliter antongrau soc.digram Graphical Models antongrau soc.elite The Danish Elite Network antongrau soc.report soc.report antonio-mora chrombrowseR chrombrowseR is an R package to load, compare, annotate and visualize chromatin interaction data from chromosome conformation capture, FISH, and similar technologies. antonio-mora iRefR "iRefR" allows the user to load any version of the consolidated protein interaction database "iRefIndex" and perform tasks such as: selecting databases, pmids, experimental methods, searching for specific proteins, separate binary interactions from complexes and polymers, generate complexes according to an algorithm that looks after possible bin… antonio-mora vennRanges vennRanges is an R package to build venn diagrams between genomic ranges antonio-pgarcia RRepast Invoke Repast Simphony models from R programs antonio-pgarcia bactosim BactoSim(Haldane) IBM data analysis tools antonio-pgarcia evoper Evolutionary Parameter Estimation for Repast Simphony Models in R antonyagnes SimplePerceptron anttsou qmj anttsou qmjdata Contains the data used in the qmj package. antuki COGugaison Package R utile à la gestion des codes officiels géographiques (COG) dans les tables de données géographiques anuf lassoSparkR A R package that implements several algorithms of the LASSO method for estimation in linear models to be run in Apache Spark engine. anuj0607 taskSchedulerR anujkhare iregnet anujkhare testR trying out different package dev tools anup50695 IMPPackage Interactive Model Performance & Validation anup50695 RtutoR Tutorial Apps for Learning R anupamsingh81 BayesDienes anupamsingh81 codemiscell anupamsingh81 testpackage anurooba Assginment5_Package anvelezec GA anyosa powdist ao90 PRIM Implementation of the Patient Rule Induction Method (PRIM) aol-statsols rm-char-create Character creation package for R aoles BioC2015Oles R package for the "Basics of image data and spatial patterns analysis in R" Bioc 2015 workshop aoles BiocStyle Temporary copy for bioc_git_transition alpha testing aoles DEFormats :recycle: Differential gene expression data formats converter aoles EBImage :art: Image processing toolbox for R aoles RBioFormats :books: R interface to the Bio-Formats library aoles foobar Minimal example of documenting generic functions with roxygen2 aoles helloRJava A dummy package interfacing a jar file that resides inside an R package. aoles iSVGplots Interactive SVG plots in R. aoles shinyURL 🔗 Save and restore the state of Shiny app's widgets by encoding them in an URL query string aoles shortMessages Example how to hide long messages in R using the internationalization infrastructure aotearoastats datacleanr aotearoastats dataplotr Data plotting functions ap-wi fars apb08005 ABP_Package apfeiffer1 aidar Package for R to read AIDA files aphalo ggspectra aphalo photobiology aphalo photobiologywavebands No description or website provided. apintar reflowLines rstudio addin that hard wraps long lines at 70 columns apipdlani stcor2 Correlograms of Space-Time ARIMA by http://alstat.github.io/stcor with minimum update aplantin MiRKATS apoorv74 cricketpedia R package for getting ODI and Test statistics for any player apoorvalal LalRUtils Misc utility functions in R for personal use. apophise rpa appeler ethnicolor Race and Ethnicity based on name using data from census, voter reg. files, etc. appelmar strucchange A fork of the R package strucchange appfigures afapi An API client for R appling rloadest_tests Tests for patches proposed in appling/rloadest forks appling unitted An R package that lets you attach smart, self-updating units to your data apratimganguly OBPSAEdev aproudian2 rapt R package for APT data processing apxu-devil OptionsStaff Option analysis functions aquaMetrics aquaMetrics ⛔ Deprecated: R package for calculating ecology aquatic metrics aquaMetrics phytobenthosMetrics 💠 R package for calculating phytobenthos metrics aquablade tenx 10x scRNAseq data analysis functions aquincum Rexperigen An R interface for downloading results from an Experigen server araezopsis ArabiDB ArabiDB araiho linkages_package This repository holds fortan and R versions of version 1 of forest gap model LINKAGES (Pastor and Post 1983). aramette otu2ot R package to determine oligotypes for DNA sequences aranryan QCEW aranryan arfredpack aranryan arlodr Package helpful in lodging forecast process aranryan cex_survey aranryan foofactors aranryan temp arappold docopulae Optimal Designs for Copula Models ararslan boxm R package for computing the Box M-test for equality of covariance matrices aravind-j PGRdup Discover Probable Duplicates in Plant Genetic Resources Collections aravind-j augmentedRCBD Analysis of Augmented Randomised Complete Block Design aravinds502 envision arbelt azwmisc arbelt azwmisc.fonts arbelt caskroom-formulae arbelt exhibitr arbelt haskellmode-vim arbelt oir-library arbelt rmdxtra arborworkflows aRbor aRbor, an R package with useful functions for Arbor workflows arborworkflows arbor-flow arbuzovv rusquant Official version of rusquant package for R arcaravaggi RandEM Random Encounter Modelling in R arcaravaggi remBoot R package for Random Encounter Modelling arcaravaggi sfPalettes Colour palettes based on sci-fi movies archidart archidart source code of the r package archit23 opentsdb arcolombo EnsDbLite.Hsapiens.83 Suggested package for arkas arcolombo QuSage_Staging SpeedSage arcolombo Rccdashboard a devel branch off erccdashboard, but avoiding namespace conflicts arcolombo SpeedSage Edits to qusage to increase speed and efficiency arcolombo junk Edits to qusage to increase speed and efficiency arcolombo overlapThis this like does time series analysis for Arkas data sets downstream and stuff arcolombo sleuthData data package for https://github.com/pachterlab/sleuth arcuellar88 govdata360R arcuellar88 iadbstats arcuo dirsetr arcvetkovic chpp Tools for Developing CHPP Products arcvetkovic chpp1 Tools for Developing CHPP Products arcvetkovic chppr Tools for Developing CHPP Products arcvetkovic test No description or website provided. arcvetkovic zwolle No description or website provided. ardata-fr mschart :bar_chart: mschart: office charts from R ardeeshany AFSSEN AFSSEN: Adaptive Function-on-Scalar Smoothing Elastic Net ardeeshany FLAME FLAME: Simultaneous variable selection and smoothing for high-dimensional function-on-scalar regression ardlop zipfextR Zipf Extended Distributions aredier coursefunctions course functions from introduction to R X 2017 areedv runforestr Run, Forest. Run! arendsee gelse A generalization of the R ifelse function arendsee monadR A monadic library error handling in R arendsee oneKP Access sequences from the 1000 Plant Initiative (1KP) arendsee parkcluster A refactored version of the clustering algorithm created by Park et al. arendsee phylostratr An R package for analysis of phylostratigraphic data arendsee pied Typed monadic pipelines in R arendsee ratr An R wrapper for rat arendsee rhmmer Simple R utilities for working with HMMER arendsee rmonad Pipelines you can compute on arendsee runqlite An R binding for the unqlite database arendsee sandr An R interface to SAND formatted data arendsee synder Trace intervals between genomes using a synteny map arendsee toyr This is a toy R package arendsee unqlite An R binding for the unqlite database arendsee zwc A fast version of the EMBOSS wordcount utility areshenk MSMVSampEn Simple R Package for Multivariate Sample Entropy areshenk gofExGauss Stan based package for simulation/estimation of ExGaussian distributions and associated GOF tests areshenk grasp R package (in progress) for the analysis of motion tracking data areshenk igt Simulation/estimation of models of the Iowa Gambling Task areshenk solitaiRe An R implementation of Bruce Schneier's Solitaire encryption algorithm arestrom iformr Tools to leverage the iFormBuilder API arestrom remisc Some simple utility functions for my own use arestrom repg Tools for PostgreSQL connections and databases areyes13 caRk areyesq89 HumanTissuesDEU areyesq89 PharmPlotter areyesq89 SummarizedBenchmark argent0 functional Usefull functions for functional R argschwind dropseqr A collection of useful R functions for Drop-seq data analysis. arianeschad mbqn Mean/Median-balanced quantile normalization for processing omics data ariel-shin tourn Analysis of tournament data arielaragon Mastering_Software_Dev_R_Master arilamstein choroplethr choroplethr simplifies the creation of choropleths (thematic maps) in R arilamstein choroplethrCaCensusTract Shapefile, metadata and visualization functions for US Census Tracts in California arilamstein choroplethrZip Data and Visualization of US ZIP Codes aritronath LEXI aritronath iMIRAGE arives rr2 R2 for correlated data: package and C++ code thanks to Daijiang Li arjunkakkar8 fac arkada38 GFUAPI Download historical prices in R arkada38 saca Download historical prices in R arkansas-water-center TAFA Trend Analysis with Flow Adjustment arkansasred faRs arlston MeTDiff arlston MeTPeak arm4nn GA STAT243 Project armaanshah96 odds armaanshah96 runner armanabraham aapack R functions for personal use armanabraham chb R package for analyzing choice history biases armandvalsesia FoodC5 R package to derive probability that any two food items are the same armandvalsesia Foodmapping Food Items Mapping using Fuzzy Matching armanshahrisa cBioAutomatedTools armanshahrisa cbaf A Bioconductor package to analyse/compare multiple genes across many cancer studies / study subgroups. It uses the cancer studies that are stored on cbioportal.org. So far, It is compatible with RNA-Seq, microRNA-Seq, microarray and methylation data. armbrustlab clusterPop clusterPop is a R package that performs real-time clustering analysis and visualization of measured phytoplankton populations using a modified version of our software packge flowPhyto. armbrustlab cytDiv cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indice… armbrustlab flowPhyto flowPhyto is a package for the R statistical programming language that uses automated computational methods (flowClust and flowMeans) to cluster phytoplankton populations, perform aggregate statistics and create maps of phytoplankton distribution from georeferenced flow cytometry data. For more details, see Ribalet, F., Schruth, D., and Armbrust… armbrustlab ssPopModel Size-structured matrix population model armenabnousi naddaR R package for NADDA using pbdMPI for parallelization armenic emaddins r studio addins armgong rjulia R package which integrating R and Julia armgong rjulia2 new rjulia version use RCall.jl armstrtw AWS.tools R package to use Amazon Web Services armstrtw RCommodity R package for commodities and futures armstrtw Rawscli R binding for AWS Command Line Interface armstrtw Rexcelpoi write excel files from R with Jakarta POI armstrtw Rs3cmd R Bindings for s3cmd armstrtw deathstar deathstar remote execution / cluster utility for R armstrtw doDeathstar foreach compatible version of deathstar armstrtw enb Minimum Torsion Bets for Effective Number of Bets and Diversification Distribution armstrtw fast.lm No frills linear regression that's faster than lm.fit armstrtw fts R interface to tslib -- a fast timeseries library armstrtw hat armstrtw hle.simulation Human life expectancy simulation. armstrtw its irregular time series library armstrtw multivariate.sv R interface to multivariate.sv model based loosely on this paper: http://www.rob-mcculloch.org/some_papers_and_talks/papers/working/lopes-mcculloch-tsay.pdf armstrtw rboostdatetime R interface to Boost Date.Time library armstrtw rcppbugs R interface for CppBugs armstrtw rlim R interface to LIM database armstrtw rrcov Armadillo version of rrcov from http://cran.r-project.org/web/packages/rrcov/index.html armstrtw rzmq R package for ZMQ armstrtw unifieddbi a unified database interface for R arnabkrmaity brlrmr brlrmr arnabkrmaity sahpm arnaud-m partition R Package partition: Race to Solve the Partition Problem arnejohannesholmin AJ Holmins functions, used also for loading all packages by library(AJ) arnejohannesholmin TSD This R package provides functions for reading, writing and other processing of data in the Time Step Data (TSD) format (and other utilities used by the packages SimradRaw, sonR, cpplot3d and echoIBM). arnejohannesholmin cpplot3d 3D-plotting and segmentation of sonar data arnejohannesholmin echoIBM This R package provides utilities for simulating multibeam sonar data (echosounder, fishery sonar, 3D-sonar), writing simulated data in the TSD format. arnejohannesholmin sonR Library for reading, processing and converting sonar data to the TSD format arnesmits DEP DEP package arnesmits DEPstoi arnesmits elisa arnhew99 B64 arnhew99 hclustPH Single linkage clustering using persistent homology arnhew99 mappeR Implements Mapper, a topological visualisation algorithm, in R arnhew99 textFlow A text command for R arnijohnsen arjtools R package with tools used in copy number variation analysis arnima-github areaplot Plot Stacked Areas and Confidence Bands as Filled Polygons arnima-github arni Arni's Toolbox arnima-github gmt Interface Between GMT Map-Making Software and R arnima-github icesAdvice Functions related to ICES advice arnima-github plotMCMC MCMC Diagnostic Plots arnima-github scape Statistical Catch-at-Age Plotting Environment arnoblalam riskSharing arnoblalam risk_sharing arnodc2 LLM The logit leaf model arnsangra ci.tests.R Continuous Integration Tests with R arnupretorius RRotF R package to fit Random Rotation Forests --- Rotation Forests that use either oblique or orthogonal splitting randomized trees as base learners. arnyeinstein gamsr arolluom RcmdrPlugin.RiskDemo R Commander Plug-in for Risk Demonstration aromanel EthSEQ aroneklund beeswarm An R package implementing bee swarm plots aroneklund bias An R package to visualize, quantify, and correct technical bias in microarray data aroneklund jetset An R package with one-to-one gene-probeset mappings for Affymetrix human microarrays aroneklund squash An R package providing functions for color-based visualization of multivariate data, i.e. colorgrams or heatmaps aroneklund surviplot An R package for drawing survival curves with number-at-risk arorar FactorAnalytics FactorAnalytics read-only branch for testing arorar VarInModRisk Variance for modified risk estimators arorar WRDS Use data across Compustat and CRSP arorar covmat Package Development for GSOC 2015 arranhamlet popvac_package Package version of the population vaccination implementation arrayfire arrayfire-r R wrapper for ArrayFire arsbar24 reg-fit artaylor85 FreqEstimationModel R package for multi-SNP haplotype frequency estimation artemis-toumazi dfped artemis-toumazi dfpk artemklevtsov RGA A Google Analytics API client for R artemklevtsov prof.tree artemklevtsov shiny-ofdsi Опросник формально-динамических свойств индивидуальности В.М. Русалова arthurgailes BuildingR Building an R Package for Coursera arthurgailes RCapstone Mastering Software Development R Capstone Project - Johns Hopkins/Coursera arthursunbao foofactors A library for foofactors arthurvinx package01 arthurvinx transcriptogramer R package for transcriptional analysis based on transcriptograms arthurwuhoo Ebola arthurwuhoo ExampleGitHubDemo arthurwuhoo TestPackage asdlkasda arthurwuhoo examplelecture arthurwuhoo ixds arthurwuhoo somethingnew arthurwuhoo somethingnewer artichaud1 mlts Machine Learning for Time Series artichaud1 piper Tidy Machine Learning artichaud1 preprocessr artichaud1 tunr arturolp patientTrajectory An R package to analyze patient's trajectories in the Electronic Medical Record arturosaco helpRs arturrc rdough R package for keeping track of my personal incomes and outcomes. [NOTE: This R package is intended for personal use, but feel free to use it and comment on it.] arunmarria factorRev Dealing with the order of factor levels arunmarria foofactors Make factors less annoying arunsrinivasan cran.stats Explore and visualise package download stats from Rstudio mirror by accounting for downloads from dependent packages arunsrinivasan flights Automated download and load entire flights data, and functions for generating NYC flights, delay and weather delay for 2014. arvi1000 rGridMap R Package for tessellated hexagon grid maps of US states in R + ggplot2 arwasayegh mdep arwasayegh midas aryeelab diffloop No description or website provided. aryeelab diffloopdata An example dataset for the diffloop package aryeelab martinlib Martin's misc R utility functions aryeelab processedHiCdata Data repository of HiC experiments processed through different preprocessing pipelines aryeelab scmeth aryeelab sparseHiC R package for the efficient compression of HiC data aryoda R_enumerations Adds a dynamic enumeration data type to the R programming language aryoda tryCatchLog R code for better error handling incl. logging with a stack trace asa-github asaBacktesting No description or website provided. asadharis ATE Non-parametric estimation and inference for average treatment effects based on covariate balancing. asadharis HierBasis An R package for nonparametric regression and fitting sparse additive models. asadharis asad.github.io asadharis iHaz "Increasing hazard function estimation for truncated and censored data asadrana83 factRordering Level order reversing asalber rkTeaching A r package with plugins for the rkward interface that implements some functions for teaching statistics asalic muffininfor No description or website provided. asancpt NonCompart asancpt busulfansim Busumfan IV infusion simulation https://doi.org/10.4196/kjpp.2012.16.4.273 asancpt caffsim R package: caffsim - Simulate plasma caffeine concentrations using population pharmacokinetic model described in Lee, Kim, Perera, McLachlan and Bae (2015) . asancpt crftools R package: CRF tools for Asan CPT asancpt ncar R package: Noncompartmental Analysis for Pharmacokinetic Data asardaes dtwclust R Package for Time Series Clustering Along with Optimizations for DTW asbara RTutorPollutionReductions RTutor Problem Set "Pollution Reductions from Renewable Energies: Social Benefits and Policy Implications" aschersleben NBCD Naive Bayes for Online Classification with Concept Drift aschersleben cointReg Parameter Estimation and Inference in a Cointegrating Regression aschersleben cointmonitoR Consistent Monitoring of Stationarity and Cointegrating Relationships aschleg PetfindeR R wrapper for the Petfinder API. aschleg numberr R package containing number-theoretic algorithms and functions related to number theory. aschleg statsapp R Shiny application for performing rapid-fire statistical analysis. aserlich ParseVR aserlich gameify Functions to deal with game elicitation aserlich poli311 asgr MRP Functions for the MRP HMFs asgr ProFit Profile Fitting Code in R asgr ProFound ProFound source finding and extraction asgr Tiler 2dF Tiling Software asgr celestial celestial R package asgr hyper.fit The hyper.fit hyperplane fitting package. asgr magicaxis The latest beta version of the R magicaxis package asgr simpack asgr snapshot Version 0.1.2 of the R snapshot package asgr sphereplot Version 1.5 of the R sphereplot package asgr tggd Package for the Truncated Generalised Gamma Distribution asgr whatsup First commit of basic whatsup code ash129 LAPP Ligand Analysis with Physicochemical Properties ash129 penrose ashander RAMlegacyr Some code demonstrating a connection to RAM Legacy. ashander matrixmodels ashander phenoecoanalyze ashander phenoecosim Simulate evolutionary, plastic and demographic responses to changing environments (moving optima) ashander runr a tidy simulation runner ashander test-with_mock ashander use-PostgreSQL A set of wrapper functions for RPostgreSQL to connect to a database ashbaldry vstsr Visual Studio Team Services and R ashiklom Chemistry-toolkit ashiklom PEcAnRTM PEcAn radiative transfer module. ashiklom dbhelpers Helper functions for working with SQL databases in R ashiklom edrpriors ashiklom mvtraits ashiklom prospectinversion ashiklom riri ashiklom rspecan ashiklom runjags My revisions to Martin Plummer's `runjags` package ashoksiri rtweet ashoksiri twitteR ashraydimri assignment PCA assignment ashtonbaker beetlepackage ashutoshbaghel Coursera_DataProducts Contains course project work asieira SnakeCharmR SnakeCharmR - R and Python Integration asifrim bioruby-install asifrim mrmosaic MrMosaic (Genomic Mosaic Structural Variant Caller) asimbo coordgeneratr Generates random location coordinates within a bounding box asishallab GeneFamilies Tools to identify and analyze gene families in R askia318 CSVProcess askilton1 homicides data analysis and package creation exercise asl rssa R package for Singular Spectrum Analysis asl svd Interface to Lanczos SVD and eigensolvers from R aslez aiR R package for identifying constant geographies, as per Slez, O'Connell, and Curtis (2015). aslez cleanR aslez concoR CONCOR for R aslez femaR An R package for implementing the field measures introduced by Martin, Slez, and Borkenhagen (2016). aslez maup Algorithms for generating areal data aslez mstaR aslez spRegime asma00 timesuperin Fitting time series models, Predicted values based on timeforecast models, Detection for anomaly data based on predcition interval asmith26 leafletplugins Plugins for R package leaflet asnr jenkins_test Dummy R package for testing Jenkins asntech JASPAR2018 aspillaga fishtrack3d Analysis of Passive Acoustic Telemetry Data in 3D asrinivasan-oa ganalyse Easy Analysis of RNASeq DE asrinivasan-oa gcount Obtain Raw Read Counts from RNASeq Data asrinivasan-oa gread Fast reading and processing of common gene annotation and NGS format files asrosenberg asymmetric-package R Package for "Unifying the Study of Asymmetric Hypotheses" assaforon ReproducibleSeminar assaforon bootkappas Bootstrap-based interrater agreement estimates assaforon cir assaforon table1xls assaron r-utils Helper R functions associatedpress apstyle Install AP style materials for R work associatedpress aptheme R Themes in AP style asstergi R-stuff astamm bayesr An implementation of Bayes Space for Gaussians in R astamm fdahotelling Global Inference for Functional Data Analysis in R astamm fdatractography Functional Data Analysis for Tractography in R astamm nevada NEtwork-VAlued Data Analysis astatham GOfish Set of simple wrappers for performing topGO analysis and creating tex output. astroashlee RExo Utilities for Exoplanet Astronomy in R astrolabediagnostics orloj Utilities for interacting with the Astrolabe Diagnostics platform astrosyam RFM RFM Analysis for R asw221 dlm An R package to fit distributed lag models using lme4 atahk bucky Bucky's Archive for Data Analysis in the Social Sciences atahk pscl Political Science Computational Laboratory atajti andego.adattisztitas Hungarian data cleaning functions atajti fbpack R package for user friendly Facebook scraping ataudt aneufinder Find CNVs in single cell sequencing data. ataudt aneufinderData ataudt chromstaR Combinatorial and differential ChIP-seq analysis in R ataudt chromstaRData Example files for the chromstaR package ataudt methimpute Investigate DNA methylation at population level. ataudt popmeth Investigate DNA methylation at population level. ataustin stocking Stock analysis with R atbroman Rolemodel Gene-set analysis via MFA-ILP atbroman allez Random-set calibration of gene-set statistics atbroman neqtl Tools for analyzing expression QTL by position on genome atenah MCGSA Moving Circular Grid Spatial Adjustment: This is a Package to integrate coordinate based geospatial techniques with moving grid method to adjust for environmental variations in high-throughput geo-referenced aerial imagery extracted from UAS and yield data of a large wheat breeding nursery. ateshkoul KinematicAnalysis The functions deal with all kinds of kinematic analysis ateshkoul Machine_learning ateshkoul PredPsych Predictive approaches to Psychology ateucher lutz Look up timezones of point coordinates ateucher rmapshaper An R wrapper for the mapshaper javascript library atfrank nmR Functions for the Analysis and Comparison of NMR Data atheriel rrails Railroad-oriented programming, in R athompson-kz1991 StockObjects Just Another Finance Package athompson1991 AlphaVantageClient Package for loading data from Alpha Vantage into R objects. athompson1991 IndeedZip athompson1991 PortfolioMakeR athompson1991 StockObjects Financial analysis with R athompson1991 ZillowFunctions Bare bones package for getting publicly available Zillow Data athompson1991 groupR R package for grouping data athompson1991 test athrom CytobankAPIstats Contains code and documentation for "CytobankAPIstats" library available on CRAN atibot eqplot Visualiztion tools for the earthquake dataset obtained from the U.S. National Oceanographic and Atmospheric Administration (NOAA) on significant earthquakes around the world. atibot tobitar For my study of R package atkinsjeff forestr forestr R package atmoschem EmissV Top-down methods to create vehicular emissions. atmoschem eixport R package to export VEIN and other emissions to other models atmoschem vein R package to estimate bottom-up Vehicular Emissions INventories VEIN. atmoswing R-toolbox Postprocessing of the AtmoSwing results in R atredennick IPMdoit In-house R package for multi-species integral projection models. atredennick community_synchrony R project files for synchrony analysis of natural grassland communities. atredennick patches Functions for calculating metrics of alpha, beta, and gamma variability. atredennick sageAbundance Population model for sagebrush based on remote sensing data. atstein DSM5 att Cdt att GGobi att e4ss att graphviz att gsdjvu att iplots Interactive graphics for data analysis in R att lux att pads att rcloud.dcplot Dimensional charting (dc.js) for RCloud att rcloud.flexdashboard flexdashboard from an RCloud notebook att rcloud.htmlwidgets HTML Widgets support for RCloud att rcloud.jupyter.notebooks Package to import and export Jupyter notebooks in RCloud att rcloud.rmd Import and Export Rmarkdown documents to/from Rmarkdown files att rcloud.shiny Shiny support for RCloud att rcloud.solr Provides notebook search capabilities to RCloud using SOLR att sfio att solomon att vcodex att wsp atuldeshpande Distilled-Sensing atuldeshpande simBM atunanggara DDP-Shiny No description or website provided. atusy mytools mytools for R atusy qntmap quantify qualitative mapping data from EPMA aubreyd modis4rwrfhydro audachang recommenderlab.test audreyqyfu dagr Bayesian method for causal graph inference audreyqyfu mrpc PC algorithm with generalized Mendelian Randomization audreyqyfu mrpc2 PC with Mendelian Randomization audreyrenson clinRes audreyrenson nychanes2microbiome audreyrenson nychanesmicrobiome aukkola FLUXNET2015_processing A toolbox for processing, quality controlling and gap-filling FLUXNET2015 dataset for use in land surface modelling aukkola FluxnetLSM A toolbox for processing, quality controlling and gap-filling FLUXNET2015 dataset for use in land surface modelling aultsch DataIO aunkauf RTutorOptimalCO2 A RTutor problem set about optimal permit allocation aurielfournier rallidae a package for all the rail functions I've built based on things in the literature aurielfournier rel My personal r package, with some simple functions I frequently use. Mostly created to learn how packages work aurokp2 MultiplierDEA aurora-mareviv mthapower Calculate sample size and post-hoc power of association studies involving mitochondrial DNA haplogroups - Based on Samuels et al. AJHG 2006 auroragonzalez ARIMA auroragonzalez entARIMA auroragonzalez prophetForecasting auroragonzalez tvscore aursiber MareyMap Estimation of Meiotic Recombination Rates Using Marey Maps aursiber Mondrian Display the relative occurrence and co-occurrence of events in a sample aursiber ade4TkGUI A Tcl/Tk GUI for some basic functions in the 'ade4' package aursiber kissDE Retrieves Condition-Specific Variants in RNA-Seq Data aushaff krakenR R package to access the Kraken.com API aushaff krakenTools austensen acsplus Wrapper functions for ACS package. austensen acssf Download and Process ACS Summary File Data. austensen austensen Personal R Package austensen geoclient R interface to NYC's Geoclient REST API austinjcase BreedR Package for Oat/Barley Breeding at Smith Lab av1611 subscriber An implementation of the subscriber profiles using R6 approach avalcarcel9 mimosa avalonbinary BonnyRead avantcredit AWS.tools Local copy of AWS.tools, which has been removed from CRAN avantcredit FookR avantcredit analytics-honeylogging avantcredit base64enc A mirror of the base64enc R package avantcredit dbtest Database testing and mocking in R. avantcredit looker3 looker3 - Looker 3.0 API interface for R avantcredit make_validation_plot R plotting tools for visualizing a Hosmer-Lemeshow test on a binary classifier avantcredit servicetests Service tests! avantcredit statsutils avantcredit validationplot R plotting tools for visualizing a Hosmer-Lemeshow test on a binary classifier avantoss vardist Variable distribution summaries in an easy-to-consume format, and tools to compare variable distributions between data sets. averissimo brca.data discontinued: check averissimo/tcga.data with the updated repository averissimo gen.rna.seq.data averissimo tcga.data Genomic data from TCGA ready to be used (organized per tissue type and in matrix form) averissimo verissimo-rpackage An r-package with a collection of useful function I like to use avilesd productConfig R Package for mining behavioral patterns from product configurators aviralg contractr Add contracts to R functions using annotations aviralg profilr Profiling with annotations in R avirkki synergetr An R package to generate synthetic data with realistic empirical probability distributions avitaliano dataProfiler Data profile over odbc connections and data frames. avitaliano datrProfile Profiles datasets (collecting statistics or informative summaries about that data) on data.frames and ODBC tables. avitaliano ynabReports avnit Project SG 40 FINC 621 Trading project avriis avR avr package for R awaardenberg CompGO An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation awalker89 Rjira JIRA REST API wrapper in R awalker89 opendocx docx writing from R awalker89 openxlsx R package for .xlsx file reading and writing. awalker89 openxlsx_testing_files Testing xlsx files for openxlsx awatanabe appr Aaron Watanabe's personal package for R awblocker fastGHQuad R package for fast, numerically-stable Gauss-Hermite quadrature awblocker ipfp R package wrapping a fast implementation of the iterative proportional fitting procedure in C awblocker networkTomography R package for network tomography awellis Oblique awellis emotiondots awellis vestcog probabilistic models for vestibular cognition awhstin awtools misc functions and aesthetic elements for my personal website awmeade psymetlab awmercer bestimate Bayesian Finite Population Survey Estimation With FPBB and BART awmercer timefactory awstringer innR2binnR Advanced variable discretization for modelling awstringer modellingTools R package development of a collection of my useful custom functions for D&A and modelling awuster geneAttribution R package for the identification of candidate genes associated with noncoding genetic variation awwsmm aww aww misc R repository axelbudde fars axellecb sigma step by step copying of tutorial in https://github.com/ramnathv/htmlwidgets/blob/master/vignettes/develop_intro.Rmd axelperschmann AbnormalReturns This R package implements the event study methodology and abnormal returns in particular. axibase atsd-api-r Axibase Time Series Database API Client for R axzinker blenderFace ayalaallon prepdat Preparing Experimental Data for Statistical Analysis ayan1 banerjee ayayron logviewr R Studio Add-in Gadget for Viewing and Filtering log4R logs ayayron rnextbus Nextbus API wrapper in R ayayron shinydnd Creating drag and drop elements in Shiny aydindemircioglu AdaOpt Small wrapper around some adaptive (gradient) optimizers aydindemircioglu ConfSVM conformal SVM after Wu+Amari 1999, 2002 and Williams 2007 aydindemircioglu LiblineaR.ACF Linear Classification with Online Adaptation of Coordinate Frequencies aydindemircioglu RcppShark An R package that builds a bridge to the Shark Machine Learning library via Rcpp. aydindemircioglu SVM.GPU aydindemircioglu SVMBridge SVMBridge - An R package wrapping different binary SVM packages aydindemircioglu cardiac Some score functions for cardiac risks aydindemircioglu crushSVM crushSVM aydindemircioglu lasvmR A Simple Wrapper for the LASVM Solver aydindemircioglu simanle A SImple MANifold LEarning package for R aydindemircioglu yakmoR a simple wrapper around the kmeans c++ library yakmo aymanabuelela ogcc aymansir collegeforecastR This is an R-Package which uses college data to analyze & predict trends in financial aid, grants, etc. aymansir odds az0 mlmeta Machine Learning Metaprogramming for R azabeo extrapolation extrapolaton factors probabilistic application to BMD azabeo lumi02 lumisizer anaisys azadbakhsh CLMC Using composite likelihood in multiple comparisons azadbakhsh ComLikMulCom R-package for using composite likelihood in multiple comparisons azampvd DrugDiseaseNet This is a read-only mirror of the Bioconductor SVN repository. azavez azavezHW6 azavezHW6 package azeloc alocomarcas azeloc brcrimR azeloc procMiner azeloc pucrj azeloc seasonBayes azemi RCAR RCAR azerbinati capStoneQuake This Package has been create for Coursera CapStone azhain MyPackage test project for writing package for r azhain exploreR azhain simpletools No description or website provided. azheng92 thresholdAnalysis azhu513 apeglm apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients. azizka sampbias Sampbias is a method and tool to 1) visualize the distribution of occurrence records and species in any user-provided dataset, 2) quantify the biasing effect of geographic features related to human accessibility, such as proximity to cities, rivers or roads, and 3) create publication-level graphs of these biasing effects in space. azizka speciesgeocodeR Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data exploration and data analysis and especially suited for biogeographical and ecological questions on large datasets. The package includes the easy creation of summary-tables and -graphs and geographical maps, the calculating of coexistence matrices and species ranges (EOO) as well as mapping diversity in geographic areas. azolling EBmodules R package for empirical Bayes modules. azvoleff R_parallel_demo azvoleff azr A collection of R scripts mainly for personal use. azvoleff cartodbr Interact With CartoDB Server From R azvoleff cdbr Interact With CartoDB Server From R azvoleff gfcanalysis Tools for working with Hansen et al. Global Forest Change dataset azvoleff glcm Calculate textures from grey-level co-occurrence matrices (GLCMs) in R azvoleff spatial.tools Fork of svn://r-forge.r-project.org/svnroot/spatial-tools/ azvoleff teamlucc Analysis of land use and cover change using satellite imagery azvoleff testpackage Package to demonstrate roxygen2 problem azvoleff wrspathrow Tool for determining Worldwide Reference System (WRS) path and row for a given spatial object azvoleff wrspathrowData Datasets used by the wrspathrow package azzoam ggBrackets A ggplot2 layer for drawing brackets annotated with p-values and significance testing between barplot samples. b-becker eatGADS b-klaus DChIPRep b-klaus concaveFDR FDR estimation based on log-concave densities b-lux RTutorCarbonLeakage PS b-steve admbsecr Analysis of spatially explicit capture-recapture (SECR) data in AD Model Builder and R b-steve ascr Acoustic spatial capture-recapture in AD Model Builder b-steve nspp Parameter estimation for Neyman-Scott point processes b-steve palm Fitting point process models using the Palm likelihood b-steve sscr Second-order spatial dependence in capture-recapture models b00mir ParallelStructure_IR b2slab FELLA FELLA: an R package for Metabolomics data enrichment through diffusion b2slab diffuStats Several diffusion scores for networks b2slab diffusion Several diffusion scores for networks b97jre -2014-03-31-jre b97jre GBP_scripts Watch b97jre HTS-de-novo-transcript-pipeline b97jre RNAmappingPipeline baasman allegRo An API for the semantic graph database, AllegroGraph baba-beda morpheusR babaknaimi mraster mmap raster: a solution to deal with big raster/image data babdebuba ftsmp forecasting time series with many predictors babeheim chessparse babeheim kaya babeheim kom babeheim ledgr plaintext double-entry bookkeeping R package babeheim yamltools babelomics hipathia Signaling pathway model babelomics hpAnnot Annotation package for hiPathia babushkala cur-R-ency Spending tracking and currency conversion tools babushkala odds bachmannpatrick myRFMpackage backlin dataview Data and Workspace Browser for Terminals backlin polarClust Tool for converting a regular dendrogram to a circular one. backlin treesmapstheorems ggplot themes following the principles in Trees, Maps, and Theorems backlin xtermStyle Terminal output coloring in R bacollier moveud Time-Specific dBBMM UDs badbye LogisticRegression badbye baidumap R interface of baidu map api badbye curl2r badbye rpro Run R Function in Terminal Quickly badbye simple-r baddstats globe R package for plotting points, lines and regions on a sphere, including a map of Earth's continents baddstats goftest R package goftest: classical goodness-of-fit tests for univariate distributions baddstats polyclip R package polyclip: a port of the Clipper library for polygon geometry baddstats spatstat.local Extension of spatstat for Local Composite Likelihood baddstats spherstat source code for analysing point patterns on a sphere baguadoramirez FancyTableR bahlolab XIBD An R package to perform relatedness mapping between pairs of individuals from SNP data bahlolab cavalier cavalier: Candidate Variant List Evaluation Report bahlolab exSTRa Expanded STR algorithm for Illumina sequencing data bahlolab isoRelate bahlolab linkrvis 📊 Visualise results from genetic linkage analysis software bahlolab moimix R package for inferring multiple infections from high-throughput sequencing data bahlolab uk10kr TIdy UK10K dataset metadata bahlolab varpr R package for Mendelian variant prioritisation based on in-house MPS pipeline baileych ohdsi-argos Affordances for Retrieval of General OHDSI Stuff baixueyuan pryrk Generate the Bond Primary Market Ranking Data baixueyuan xyLearnRpkg baixueyuan zsl Scraping bond discount rate of pledged repo by China Clear. baj12 crtRNAtools Collection of tools for RNAseq bulk and single cell RNAseq data analysis. bakuhatsu diceRollers A neat shiny gadget and Rstudio addin for dice rolls. bakuhatsu measuRoots A package for automated data analysis of wheat root lengths exported from SmartRoot. bakuhatsu microarrayTools Tools for data analysis of microarray and other transcriptome datasets bakuhatsu pacNamesAddin RStudio Addin for insertion of package names. bakuhatsu zmaysGeneTools Database of Zea mays gene identifiers, gene ontology information, gene symbols, etc, for use with R bioconductor. balajiambreshrajkumar fars balajiambreshrajkumar geomhurricane balajior binbwplot Bin Box Whisker plot balazsdukai testdocument testing devtools::document() balcomes aggRmesh Tools for Accessing NCIBI Web Services in R: aggRmesh balcomes bayesDP Tools for the Bayesian Discount Prior Function balcomes listRed View/edit R list objects in the browser via httpuv balcomes mdictools MDIC Tools for Survival Analysis baldermann rsaeGWR Robust small area estimation under spatial non-stationarity baldermann saeRGW Robust small area estimation under spatial non-stationarity balladeer bls.data Query BLS public API for data and catalog information ballengerj Fishy Functions to Facilitate Standard Analyses Conducted in Fisheries Science ballengerj FishyR Functions to Facilitate Standard Analyses Conducted in Fisheries Science balomenos DEsubs DEsubs: an R package for flexible identification of differentially expressed subpathways bamonroe MSL bamonroe ctools A small toolset for cross-platform parallel in R bamonroe halton bangtle P4CRT bangtle Power4CRT bangtle PowerRTCRT bangtle abc baogorek typingtutor typingtutor is an R package and companion website for typing practice in R. Play often to increase your R coding fluency, both by getting faster at typing common syntax patterns and increasing your exposure to code from a variety of R repositories. baolinwu KATSP Sample size and power calculation for variant-set based association tests baolinwu MQTA an R package for versatile genome-wide association test of multiple quantitative traits baolinwu MSKAT Multi-trait variant-set association test baolinwu MTAR Various multi-trait association tests in R baolinwu MiRV MiRV R package baolinwu SKATR Some alternative methods for variant-set association test baolinwu mkatr Some statistical methods for testing variant set association bapoorva MarwaTools baptiste blogging baptiste caption Inserting plotting symbols in figure captions. baptiste cda Coupled Dipole Approximation baptiste cdos order-of-scattering coupled dipole approximation baptiste dielectric physical constants and dielectric functions commonly used in optics, plasmonics baptiste egg (fragile) extensions for ggplot2 baptiste flickr convenience functions to query flickr photo stream and build portfolio baptiste ggflags flag geom for ggplot2 baptiste gitrub baptiste gridextra Miscellaneous Functions for "Grid" Graphics baptiste gridplot grid functions to plot matrices baptiste mie Mie theory for electromagnetic scattering by spherical objects baptiste mini testing baptiste planar Electromagnetic fields near planar interfaces. baptiste polarisability polarisability of small scattering particles baptiste raman tools for Raman spectroscopy baptiste rcppfaddeeva Rcpp Bindings for Faddeeva baptiste tablegrob drawing tables with grid and gtable baptiste tamm multilayer structures baptiste tmatrix T-matrix method for electromagnetic scattering by particles baptiste tpl baranovxyz testr barbehenna BEIN3Project barbehenna KerkhoffPackage barefootbiology heyexr Import, transform, and visualize ocular coherence tomography (OCT) data in R barkasn hogsvdR Higher-Order Generalized Singular Value Decomposition R package barkasn nbHelpers A package with a collection of helper functions for bioinformatics analyses barkingcave scvotingdistrictr barnabe building_an_r_package barrenWuffet convPkg personal convenience package in R barrosm google-motion-charts-with-r Automatically exported from code.google.com/p/google-motion-charts-with-r barrpet gclust Network Community Detection barrpet redwalk-r Network Community Detection Package for R barryrowlingson PrevMap EG and PJDs PrevMap package barryrowlingson barrymisc Miscellaneous R Snippetry barryrowlingson bingoer R Conference Bingo Card Generator barryrowlingson caramellar Conditional Auto-regressive Space-Time Model barryrowlingson changer Interface to www.change.org API barryrowlingson circlefitter R package to fit circles to points barryrowlingson dispensr Access to the NHS dispensing data barryrowlingson ebola R Code for reading and plotting EVD data barryrowlingson geninvgamma Generalized Inverse Gamma Distribution in R barryrowlingson geomap Layer-based mapping for R barryrowlingson geostat2017 barryrowlingson opVaR Recovery of opVaR package from binary distribution barryrowlingson phlabr Public Health Labs R Package barryrowlingson rdocr Interface to R Documentation barryrowlingson rtopojson read topojson files into R barryrowlingson rwfs An implementation of a WFS server in R barryrowlingson samplezone R code for sampling and jittering within regions barryrowlingson shapeygraph Make graphs with shapes. barryrowlingson sirgraph Modelling infections on graph networks barryrowlingson spatsurvvis Spatial Survival Visualisation barryrowlingson splatr Space-time Partial Likelihood Analysis Tools for R barryrowlingson spong Spatial Objects Next Generation barryrowlingson telemetr A radio telemetry package for R barryrowlingson trmm Read trmm files barryrowlingson vectype Creating a new vector type barryrowlingson what3wordr Interface to the What3Words API (key required) bart6114 infuser infuser is a simple and very basic templating engine for R barticsoka ContiniuousIntegrationR barticsoka ProjetEuleR bartongroup RATS Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage. bartvink Developing-Data-Products barupal ManyStats Handy functions for calculating statistics/graphics for complex metabolomics projects with several experimental groups barupal MetSkye R functions for Generating metabolomics data matrices from GC/LC MS data files barupal R101 basdunn binombayes An R package for bayesian MCMC simulation of a Random Coefficient Binomial Model basil-yakimov ecomf Package to perform multifractal analysis of community spatial structure basille basr A bunch of basic functions for a variety of usage. basilrabi mansched basilrabi mansched2 basilrabi minmanhours R package with tools for manhours budgeting in Taganito Mine basketballbeane sternclean sternclean baskineliz ALTREclone bastianmanz GPM_rain GPM-IMERG Download & Precipitation Modelling Analysis bastianmanz dummyRpackage bauer-alex FoSIntro Convenience functions for function-on-scalar regression with refund::pffr baweiher Gantt_HC baweiher Rcd Directory navigation & some helper functions baweiher bloom baweiher bwmisc baweiher dbGadget RStudio gadget for managing database connections. baweiher hcGantt Gantt Charts for Highcharter, the fantastic wrapper for Highcharts.js baweiher hcGantt-master baweiher hcgantt Gantt charts for Highcharter baweiher rcd Easy directory navigation and contents printing baweiher waffles baweiher whisper Determine what language a website is in baweiher zukov No description or website provided. bayesball BApredict Package for computing component predictions of batting averages bayesball BayesTestStreak Functions for detecting streakiness in binary response data bayesball LearnBayes Functions to Learn Bayesian Inference bayesball LearnEDA Functions for learning exploratory data analysis bayesball LearnEDAfunctions bayesball RStudio bayesball TeachBayes Functions to Help Communicate Bayesian Inference bayesball TestStreak bayesball mystatcast bayesball statcast bayesball tsub bbTomas rPraat rPraat package for R bbTomas slidify yaml UTF-8 working slidy based on slidify 0.4.5 + stringr 0.6.2 bbTomas slidifyLibraries slidifyLibraries 0.3.1 compatible with slidify 0.4.5+stringr 0.6.2 bbTomas tbTools R Package: Tomas' personal mix of utilities bbaattaahh ABCs-java_projekek-all bbaattaahh CLS_solver_Raman bbaattaahh make_nice_burned_df bbaattaahh soul-of-UEA bbakker1989 CINsim Chomosomal instability simulator bbaumfalk Package1 Package 1 for EDPS 845 bbaumfalk supr Superintendent's Plan Outcome Report bbcuffer bbcfigr bbcuffer rcutils bbest mypackage R package to do some basic math bbest ohigui Ocean Health Index - Graphical User Interface bbest testgeo testing geo R package creation bblonder comclim Community climate framework (R package) bblonder flir bblonder hypervolume High dimensional geometry operations - (hypervolume R package) bblonder netassoc Species association networks (netassoc R package) bblonder timeordered Time-ordered network analyses (timeordered R package) bblpo diaglm bbms09 TriadSim bbms09 TrioSim bbnkmp DoseFinding bbolker ADmarsaglia R package wrapping Marsaglia and Marsaglia Anderson-Darling code bbolker agqsims code for simulations of adaptive Gaussian Hermite quadrature performance bbolker bbmle maximum likelihood estimation package bbolker betararef compute rarefied beta diversity and simulate communities (R package) bbolker bio3ss3 code for Bio 3SS3 at McMaster University bbolker broom.mixed tidy methods for mixed models in R bbolker cpcbp code for common principal components bbolker cricketr R code for evaluating stopping rules for cricket games bbolker emdbook R package for support of Bolker 2008 Ecological Models and Data bbolker fitsir bbolker glmmadmb generalized linear mixed models with AD Model Builder bbolker revdepcheck reverse dependency checking tools bbolker rlibpkg An R package (library) that provides the "package" command. bbolker wwiki WorkingWiki / MediaWiki access via R bbongalov CambridgeForestEcologyData bborgesr insertUI No description or website provided. bborgesr pool bborgesr shiny-error-hiding No description or website provided. bborgesr shiny-table-demo No description or website provided. bbreaker-usgs MISTEuv Web app for estimation of unit-value streamflow data bbreaker MISTEdv Web app for estimation and review of daily value streamflow data bbreaker MISTEuv Web app for estimation of unit-value streamflow data bbrede PASTIS bbrede S2processing Export Sentinel-2 geo-data from S2 native products to more common raster formats bbrede S2utils Utilities to work with ESA Sentinel-2 satellite products bbuchsbaum FROIAtlas Tools for working with the FROIAtlas bbuchsbaum eyesim eye-movement similarity analysis bbuchsbaum fmrireg R package for regression-based analysis of fMRI data bbuchsbaum manialign bbuchsbaum neighborweights functions for creating weighting matrices based on similarity relationships bbuchsbaum neuroca neuropls is an implementation of partial least squares for neuroimaging data. bbuchsbaum neurocluster bbuchsbaum neuroim R package for working with volumetric neuroimaging data bbuchsbaum neuroim2 bbuchsbaum neuropls neuropls is an implementation of partial least squares for neuroimaging data. bbuchsbaum neurosurf bbuchsbaum neuroviz visualization of neuroimaging data bbuchsbaum rMVPA Multivoxel Pattern Analysis in R bbuchsbaum robpca bbuchter stox R Script for scraping stock information from html bbudke bbcommon Common functions for R bbuzzee statAlgos bcaffo MRICloudR_T1 A package for T1 volumetric analysis of MRIcloud output bcaffo MRIcloudT1volumetrics A package for T1 volumetric analysis of MRIcloud output bcaffo mricloudR bcahn7 STAT547M-hw09-An-Byeongchan bcahn7 STAT547M-hw09-powers bcalder savR bcallaway11 BMisc miscellaneous functions I use across projects bcallaway11 TempleMetrics bcallaway11 csabounds Tight bounds on distributional treatment effect parameters with panel data bcallaway11 qte R qte package bceaton stochasim An R package to implement the STOCHASIM model bcgov BCForestInventory Home of R functions to compile BC forest inventory data bcgov BCWaterDischargeAnalysis bcgov bcgovr An R package to support development of R-based projects & packages following bcgov open source policies bcgov bcgroundwater An R package to facilitate analysis and visualization of groundwater data from the British Columbia groundwater observation well network bcgov bcmaps An R package of map layers for British Columbia bcgov bcmaps.rdata Map layers for British Columbia, in R bcgov canwqdata R 📦 to download 🇨🇦 open water quality data bcgov cccharts An R package for creating data visualizations for a set of climate change indicators bcgov envreportutils An R package with ggplot2 themes & other functions related to Environmental Reporting BC work flows bcgov fasstr An R package to help summarize, analyze, and visualize streamflow data. bcgov housing-data-challenge-plotly bcgov hydrolook Provides functions and reports for the Water Survey of Canada Hydrometric network bcgov rcaaqs An R package to facilitate the calculation of air quality metrics according to Canadian Ambient Air Quality Standards bcgov rems An R package to access data from British Columbia's Environmental Monitoring System bcgov ssdca An R package to fit and plot species sensitivity distributions. bcgov tidyhydat An R package to import Canadian hydrometric data and make it tidy bcgov work-item-aggregator bcgov wqbc An R package for water quality thresholds and index calculation for British Columbia bcjaeger r2glmm An R package for computation of model R squared and semi-partial R squared (with confidence limits) in linear and generalized linear mixed models bcm-uga MatrixFactorizationR Matrix factorization algorithm bcm-uga NaturalGWAS R package for the special issue "MER - Natural GWAS" bcm-uga TESS3_encho_sen TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics. bcm-uga dmprocr An R package that performs differential methylation profiles clustering. bcm-uga dmprocrdata A set of data dedicated to the dmprocr R package. bcm-uga lfmm Fitting latent factor mixed models bcm-uga pcadapt pcadapt has been developed to detect genetic markers involved in biological adaptation. pcadapt provides statistical tools for outlier detection based on Principal Component Analysis (PCA). bcm-uga pendadata A set of data dedicated to the penda R package. bcohn12 bc bcohn12 neuromechanics bcohn12 retina Tools for visualizing and comparing data from vertebrate retinas bcohn12 stereology-resampling bczekanski middApril bczekanski project2 bczekanski project4 bczekanski project6 bczekanski project7 bczekanski wcgrads bczernecki imgw Automatize downloading of IMGW-PIB meteorological/hydrological dataset bczernecki meteorogram only for testing purposes bczernecki pm bczernecki sondowania bd-R bdclean biodiversity data cleaning bd2kccd r-causal R Wrapper for Tetrad Library bdacunha randompic bdcaf rawTof open h5 tof files in R bdcaf vignetteEngineMake A vignetteEngine that builds vignettes from Makefiles bdearlove bdearlove.github.io bdearlove treeImbalance An R package for detecting asymmetry in time-sampled phylogenetic trees. bdemeshev SSOAP copy of the R-package SSOAP bdemeshev azbuka Rmd templates for russian language bdemeshev bigr bigr R package (useful for BIG company) bdemeshev bvarr r package for bayesian VARs bdemeshev bvarrKK Translation Of Koop And Korobilis BVAR Matlab Code Into R bdemeshev cbr R package for downloading data from central bank of Russia bdemeshev datamos datamos R package: download datasets from data.mos.ru bdemeshev econru econru R package bdemeshev edxr R package for converting tests from coursera-xml to edx-xml bdemeshev exams fork of exams package bdemeshev inflation.project code for inflation project bdemeshev msbvar msbvar R package reloaded bdemeshev r_manual_book R manual. Book in russian using bookdown bdemeshev rims R package for IMS Healt company bdemeshev rlms rlms R package: functions facilitations loading and preprocessing rlms data bdemeshev rusquant fork of rusquant project bdemeshev sophisthse R package to download data from sophist.hse.ru bdemeshev tikzsetup tikz setup R package bdemeshev torro bvar estimation as project bdemeshev vectordf vectordf: R package for t and Gamma distributions with vector of degrees of freedom bdilday BProDRA bdilday BaseballHOFModels bdilday KaggleMarchMadnessTools bdilday bprodradata bdilday marcelR Marcel projections bdilday rstantest bdsegal fastPerm Fast approximation of small permutation p-values bdsegal fastperm Fast approximation of permutation p-values by partitioning the permutation space bdsegal gammaDist Gamma difference distributions bdsegal matrixTest R package for testing symmetric matrices for block diagonal structure bdsegal psplinesl1 R package for fitting additive mixed models with P-splines and an l1 penalty using alternating direction method of multipliers and cross validation bdwilliamson nova R package to go along with theoretical work on a nonparametric variable importance parameter. bdwilliamson npvi R package to go along with theoretical work on a nonparametric variable importance parameter. bdwilliamson vimp R package to go along with theoretical work on a nonparametric variable importance parameter. beanumber RGameDay An API for R to access the MLBAM GameDay data beanumber citibike R package based on ETL framework to interface with NYC CitiBike data beanumber colleges Data about colleges enrollments, donation, and athletics beanumber compgraph R package for working with composite graphs beanumber cranium R package to quantify radial bridge images beanumber etl R package to facilitate ETL operations beanumber imdb R package to load the IMDB into a database beanumber macleish An R package to download and process weather and spatial data from the MacLeish Field Station in Whately, MA beanumber mdsr Complement to CRC Press book *Modern Data Science with R* beanumber nyc311 R package providing an API to the NYC 311 data beanumber nyctaxi R package to download NYC Taxi data beanumber openWAR An R package enabling the computation of openWAR using MLBAM data beanumber openWARData An R package consisting of data associated with openWAR beanumber teamcolors an R package providing color palettes for pro sports teams beanumber tourneyr R package to simulate tournaments bearcreek domstolr Tool for extracting text data from decisions handed down by the Norwegian Supreme Court bearloga BCDA This R package is a set of tools for Bayesian analysis of categorical data, specifically 2×2 contingency tables. bearloga MLPUGS An R package for Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains) bearloga WikidataQueryServiceR An R package for the Wikidata Query Service API bearloga cablecuttr An R wrapper for CanIStream.It API bearloga greenr Less Restrictive Tree-based Classification and Regression bearloga maltese Little R utility package for making time series data more machine learning-friendly bearloga tinydensR A set of RStudio add-ins for playing with distribution parameters and visualizing the resulting probability density and mass functions. beast-dev RBeast R tools for posterior analyses using BEAST beautifulMountain PdPDB Pattern Discovery in PDB structures of metalloproteins becarioprecario GeogebraR Examples on how to link Geogebra and R using OpenCPU becarioprecario SAE2 Small Area Estimation R package becarioprecario SEMCMC Spatial Econometrics models with jags and Stan. becarioprecario SEjags Spatial Econometrics models with R and jags. becarioprecario sumR Simple package to teach how to create R packages (with .C and .Call) bedatadriven econometer R package to query Dutch open data sources bedatadriven gnu-r bedatadriven hamcrest GNU R package implementing the Hamcrest framework for writing unit tests bedatadriven renjin-matrix bedatadriven renjin-rjava beemyfriend rGremlin beemyfriend tinkR let's play with graph data! beerda lfl linguistic fuzzy logic algorithms: mining for linguistic fuzzy association rules, composition of fuzzy relations, performing perception-based logical deduction (PbLD), and forecasting time-series using fuzzy rule-based ensemble (FRBE) beerda maker befdata rbefdata behrica mssTablesToExcel behrica tabletools Supporting function for working with (html,Flextables) tables in Rmarkdown behuang dlmap Detection and localization QTL mapping behuang mpMap R/mpMap source code behuang spclust Selective phenotyping clustering beigebrucewayne brandindexr 📦 R interface to the YouGov BrandIndex API beigebrucewayne datoramar 📦 R interface to the Datorama API bekkabratch aps-clone belasi01 RspectroAbs Routines to convert spectrophotometric optical depth (Absorbance) to absorption coefficient for dissolved and particulate matter and apply spectral analyses. belhal saemix belleau methInheritSim Whole-Genome Inherited Bisulphite Sequencing Data Simulation belleau methylInheritanceSim Whole-Genome Inherited Bisulphite Sequencing Data Simulation ben-arnold tmleAb tmleAb: Targeted maximum likelihood estimation for antibody data ben-e benMisc Simple R tools. ben-gready free_text_analyzer Analyze and visualize keywords/entities and sentiment of free-form text data using this Shiny Application ben-mhamed DEPLr ben-mhamed biodynsls A package that implements the modified biomass dynamic model for short-lived species (not yet finished) ben519 btree binary tree structures as R data.table objects ben519 claimz R package for wrangling and analyzing insurance claims data ben519 mltools Exploratory and diagnostic machine learning tools for R ben519 trinalysis Tools for working with transactional data in R benaug Mbmisscap Simulates hair snare mark recapture scenarios under various subsampling and DNA amplification models and asses bias introduced in Mb due to first captures being lost benaug OpenPopSCR Functions to simulate from and fit open population spatial capture recapture models. Currently fits fixed, year-specific, or sex-specific parameters. The basic population growth model can be found in Chandler and Clark (2014; http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12153/full), minus the occupancy component and with year and sex-specific parameters. benaug SCRRcpp Models fit: spatial partial identity for camera trap observation model, SCR0, naive independence estimator for partial identity. Rectangular or polygon continuous state space. With or without a trap functionality file. At the moment, this is my personal package containing models I'm working on, but may be of wider interest. benaug SPIM Models fit: 2-Flank spatial partial identity model (SPIM), categorical SPIM, SCR0. Spatial mark-resight with categorical identity covariates to be added soon. Rectangular or polygon continuous state space. With or without a trap functionality file. Email me if you need new functionality at baugusti@vt.edu. benaug move.HMM Flexible, user-friendly Hidden (Semi) Markov Models for animal movement data (Langrock et al. 2012) bendenis 701_Project bendv bfastPlot Plotting functions for bfast-type objects bendv bfastmonitor.rasterEngine Implementation of bfastmonitor() and related functions using the rasterEngine() function (spatial.tools) bendv bfmThresh experimental alternative to bfmSpatial() from bfastSpatial package bendv landsatmeta Tools for extracting Landsat metadata downloaded from EarthExplorer bendv rastergrid Grids raster data into chunks bendv rgrowth Post-disturbance regrowth monitoring using Landsat Time Series (LTS) bendv timeSyncR Implementation of TimeSync (Cohen et al., 2010) in R for calibration/validation of Landsat time series based change detection methods. benfasoli ivis Interactive plotting in R benfasoli uataq R package for data manipulation and statistical analysis benguerenler6565 DeliveryMan DeliveryMan - AI Lab #1 benguerenler6565 delivery-man benguerenler6565 the-croc benguerenler6565 the-man benharden27 sea benhollomon lmOut Regression summary output benilton benilton.github.io benilton crlmm-release benilton crlmmOld benilton oligo-release Repository exclusive for the release version of Bioc oligo package benilton oligoClasses-release Release version of oligoClasses benilton oligoClassesOld oligoClasses package benilton oligoOld oligo R/BioConductor package benilton pdInfoBuilder-release Repository exclusive for the release version of Bioc pdInfoBuilder package benilton pdInfoBuilderOld Development version of Bioc/pdInfoBuilder package benilton rhdf5utils Utilities for rhdf5 benja0x40 MRA.TA Multi Resolution Analysis of Tiling Arrays. (R Package) benjamin-ackerman instagramR Create Instagram analytics in R benjamin-chan prepR Prepares R Session With Commonly Used Functionality benjamin-merkel ProMM probabilistic movement model for geolocation data benjamin-merkel probGLS probabilistic algorithm for geolocation data benjamin-w-campbell egoTERGM egoTERGM benjamin-w-campbell fergm fergm benjaminhlina ecotox Analysis of Ecotoxicology benjaminjack parsemsf An R package for parsing Thermo MSF mass spectrometry files benjaminrich PCSmisc R library for pharmacometric dataset construction and manipulation benjaminrich linpk benjaminrich table1 benjaminrobinson LearnDC An R package to use LearnDC's public API to get live and longitudinal data on the public and public charter school systems in Washington, DC. benjaminryanclarke DFSLabs Daily Fantasy Sports Tools using R benjaminryanclarke Daily-Fantasy Started as a personal project and has turned into the main tool I use for my Daily fantasy analysis... Graduated from excel to R and just keep building, projecting, and winning money every day :) benjaminschlegel brant Package to calculate brant test for parallel regression assumption benjaminschlegel experiment.tools package woith tools for experiments benjaminschlegel glm.predict R GNU Package to calculate discrete changes for glm models benjaminschlegel lsmaps benjamtre fieldscanr benjcunningham ben Personal R package of Ben Cunningham benjcunningham cfbmod Mine the web for NCAA football data benjcunningham googlecalendar Easily access and modify calendars, events, and UI settings via the Google Calendar API benjcunningham govtrackr Client for the GovTrack.us API benjcunningham rcarlo Miscellaneous exercises in Monte Carlo simulation benjcunningham subtitler Read and write video subtitle formats in R. benjh33 APMBook Work and environment for Applied Predictive Modeling benjh33 ggd3Rwidgets benjh33 radshiny Simple R package to create multi-page shiny apps benjiec xcms benjjneb dada2 Accurate sample inference from amplicon data with single nucleotide resolution benjjneb decontam Simple statistical identification and removal of contaminants in marker-gene and metagenomics data benjones2 WOODCARB3R WOODCARB3R Package benjones2 WOODCARB3RB benjones2 benr Sample package for math and rolling dice benjones2 benr2 benjones2 simplemath This is for demo purposes. benjones2 usfsprac benkeser cvAUC.plus benkeser cvma Cross-validation-based maximal associations benkeser drinf benkeser drtmle Nonparametric estimators of the average treatment effect with doubly-robust confidence intervals and hypothesis tests benkeser halplus Nonparametric regression and prediction using the highly adaptive lasso algorithm benkeser haltmle.sim benkeser healthcosts No description or website provided. benkeser modifySL benkeser onlinesl benkeser r2weight Machine learning-based summaries of association with multivariate outcomes benkeser sievetrend Tests for trends in vaccine efficacy by genetic distance benkeser survtmle Targeted Learning for Survival Analysis benliemory BinStrain Statistical modeling for SNP based genotyping of mixed bacterial benliemory Methylphet benliemory adaptiveHM Historical Rank-based Adaptive Hierarchical Model benliemory rankIPBT Historical Rank-based Informative Priors Bayesian Test benmack helpeR Helper functions benmack iterOneClass benmack miscRfunctions Miscellaneous R functions benmack oneClass One-class classification in the absence of test data. benmack rasterTiled benmack threshold benmarwick 1989-excavation-report-Madjebebe Text, data and code to accompany the analysis of the 1989 excavation data benmarwick 1989-excavation-report-Madjedbebe Text, data and code to accompany the analysis of the 1989 excavation data benmarwick Interactive_PCA_Explorer Shiny app for exploring a PCA benmarwick JSTORr Simple text mining of journal articles from JSTOR's Data for Research service benmarwick LaplacesDemon A complete environment for Bayesian inference within R benmarwick Pleistocene-aged-stone-artefacts-from-Jerimalai--East-Timor Text, data and code to accompany the analysis of stone artefacts reported in Marwick et al. benmarwick Steele_et_al_VR003_MSA_Pigments benmarwick Stratigraphy-and-radiocarbon-dates-from-Gua-Mo-o-hono-Sulawesi Text, code and data to accompany Piper et al. benmarwick au13uwgeoarchlab R Code for reproducible research in geoarchaeology benmarwick binford Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets" benmarwick bookdown2 bookdown modified to include basic handling of citations, references, captions and cross-references benmarwick checkpointtest benmarwick culturalevochange benmarwick cvequality Tests for the equality of coefficients of variation from multiple groups benmarwick gsloid Global Sea Level and Oxygen Isotope Data benmarwick javaonappveyortest benmarwick ktc11 benmarwick kwakmarwickaas2015 benmarwick olympicdamboundaries benmarwick precipitation_experiment_schedule_package benmarwick pyrater benmarwick researchcompendium This is an empty repo created as an aide-mémoire for when I start a new project benmarwick rrtools rrtools: Tools for Writing Reproducible Research in R benmarwick smps time series colour contour plots of data from Scanning Mobility Particle Sizer (SMPS) data benmarwick snakecaser An RStudio Add-in to convert text to snake_case (e.g. for making object names) benmarwick test benmarwick wordcountaddin Word counts and readability statistics in R markdown documents benmbutler powdR XRPD data analysis benmccary eveR A silly package I use to figure out what items to buy in EVE Online benmoran11 rubias identifying and reducing bias in hierarchical GSI benmorton28 ephmetrics benmuirhead rPkg benneely ddsRClient R programmatic client to the duke-data-service benoslab causalMGM causalMGM is an R package that allow users to learn undirected and directed (causal) graphs over mixed data types (i.e., continuous and discrete variables). benpeloquin7 rrrsa benskov humapr Creates Visualisations of Topographic Human Data bensoltoff ZeligBLME Initial commit bensoltoff nhlscrapr Fix for assemble.mega.file bensoltoff redditR R package for querying the Reddit API bensoltoff rnflstats Playing around with NFL stats and win-probability models in R bensoltoff rspellingbee rspellingbee bentaylor1 cruts Functions for reading in and manipulating CRU TS3.21: Climatic Research Unit (CRU) Time-Series (TS) Version 3.21 data. bentaylor1 kalmanST Kalman Filtering for Spatiotemporal Processes bentaylor1 lgcp R package for inference with log-Gaussian Cox processes bentaylor1 spatsurv Spatial Survival Analysis R Package benubah control Control Systems Toolbox in R benubah controldev A development repository for the control package in R for files in work benyomin censusFunctions R functions for Census Data berchuck womblR Bayesian spatiotemporal boundary detection with dissimilarity metric berdaniera markr Marking timeseries data in R berdaniera preparer Preparing time-series data for analysis berdaniera sapflux sapflux berdinazzi easyPostGIS R package for SQL wrappers berdinazzi easyPostgreSQL R package for SQL wrappers bergant airtabler R interface to the Airtable API bergant bpmn BPMN diagrams in R bergant datamodelr Data model diagrams in R bergant depmodelr Dependency diagrams bergant finstr :chart_with_upwards_trend: Financial statements in R bergant jsondiff Compare R Objects as JSONs bergant nlexperiment :fish: R package for NetLogo experiments http://bergant.github.io/nlexperiment/ bergant rapiclient Dynamic Open API (Swagger) Client for R bergant rmdoc R Markdown Template for Software Documentation bergant trafficaccidents Traffic Accidents Data bergant xbrlus R interface to XBRL US API bergsmat csv formalized csv file handling bergsmat define Implementing FDA Specifications in R for Submission of Analysis Datasets bergsmat encode encode ordered lists and pairlists as strings bergsmat latexpdf Convert Tables to PDF bergsmat meta store metadata along with data bergsmat metaplot Formalized Plots for Self-Describing Data bergsmat nonmemica interact with NONMEM models bergsmat origami A Self-Describing Dataset Format bergsmat partab make a parameter table from NONMEM output bergsmat pharmval an integrated pharmacometric data format bergsmat spec A Data Specification Format and Interface bergsmat tad Calculate time since most recent dose for pharmacometric data. bergsmat wrangle a systematic data wrangling idiom bergsmat yatc Yet Another Time Class berkorbay ab2015-r berkorbay meftest berkorbay secimler Türkiye'de sandık bazında seçim analizi yapabileceğiniz bir R paketi. bernardoamedeiros Pack bernatgel FindFocals A small R package to find focal genomic gains and losses in SNP array data bernatgel karyoploteR karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome bernatgel regioneR An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests bernau survHDExtra additional features for R-package survHD bernd-mueller earthquakes bernd-mueller rtestlibrary4coursera bernd-mueller rtestlibraryfars4coursera R test library FARS for Coursera berndbischl BBmisc berndbischl ParamHelpers berndbischl aclib-r-connector berndbischl bbcompr Interface to bbcomp berndbischl focussearch berndbischl mlr mlr: Machine Learning in R berndbischl mlrMBO Watch berndbischl parallelMap R package to interface some popular parallelization back-ends with a unified interface berndbischl rcpp_demos berndbischl rscimark berndbischl tspmeta Instance feature calculation and evolutionary instance generation for the traveling salesman problem bernhard-da sdcTable git-repo for sdcTable development berryni mDINGO Dingo microbiome pipeline bert9bert ParallelForest R package implementing random forest classification using parallel computing, built with Fortran and OpenMP in the backend. bertcarnell rational An R rational number class using a variety of class systems besibo compteR Because "a debt paid is a friend kept" betabandido exptools Useful tools for computer science research experiments bethatkinson attribrisk betonr gPostgis pacote em R, que faz a utlização da rgdal com postgis e kml betonr rPostgis pacote que faz a de leitura de banco de dados (postgres-posgis) e plot um grafico, via linguagem R - testes RpostgreSQL betsig GeneStructureTools betsig branchpointer prediction of intronic splicing branchpoints beykuet ROandaAPI R Package for Oanda API bfatemi archivist.me bfatemi consolenotes bfatemi costmodelr bfatemi dslib bfatemi dsr bfatemi dvAnalytics bfatemi easydata A package to simplify common data wrangling tasks in R bfatemi friendlyr Tools to automate the mapping of unfriendly coded columns to the corresponding friendly data bfatemi fubaR Tools to prevent analysis from being completely fubar. Advanced uses like: distributed/iterative data analysis, cpu/gpu parallel processing, and utility functions to help time and monitor R function calls bfatemi fubar Tools to prevent analysis from being completely fubar. Advanced uses like: distributed/iterative data analysis, cpu/gpu parallel processing, and utility functions to help time and monitor R function calls bfatemi hider Simplified encryption of R objects bfatemi isdata bfatemi istools bfatemi learner What the Package Does (one line, title case) bfatemi midnightr bfatemi morphr No description or website provided. bfatemi morphr2 bfatemi ninjar Ninjar is a package that contains my personal helper functions, as well as RStudio addins I've created to make my workflow more efficient. bfatemi ralgotools [DOCUMENTATION NEEDED] TITLE bfatemi spawnr Automated launch of RStudio and OpenCPU in the cloud, on high performance computing nodes using DigitalOcean's API. Workspace is initialized with my packages and other tools installed and loaded. Connection to my github is also configured automatically. Optimizations designed for my personal preference and data science workflow bfatemi sqlsauce Utility functions built on top of the package RODBC to facilitate an efficient SQL + R workflow bfatemi sqltools bfatemi tenantdash [DOC] TITLE bfgray3 bigo Simple tools for analyzing algorithmic complexity bfgray3 cattonum Encode Categorical Features bfgray3 iaaf IAAF Results Scraper for R bflammers ANN2 Artificial Neural Networks package for R bfunovits indeterminateR This R-package verifies the claims in the article "The Full Set of Solutions of Linear Rational Expectation Models". In particular, it shows that some equilibria are classified as indeterminate by Lubik and Schorfheide even though they have the same observable outcome. bgbrink ddPCRclust A package for automated quantification of multiplexed ddPCR data bgbrink dropClust A package for automated quantification of multiplexed ddPCR data bgctw REddyProc Processing data from micrometeorological Eddy-Covariance systems bgctw RespChamberProc Processing concentration data from chamber measurements bgctw logitnorm Functions for the logitnormal distribution bgctw testGithupPages bgreenawald projmanr Project Management Tools in R bgreenwell afsc R tools for Air Force Specialty Codes (AFSCs) bgreenwell bmisc Miscellaneous R functions bgreenwell bpa Basic pattern analysis in R bgreenwell coerce bgreenwell investr Inverse estimation in R bgreenwell mds R tools for mission design series (MDS) bgreenwell mertree Regression trees for longitudinal and clustered data bgreenwell ordr An R package for ordinal regression diagnostics bgreenwell partial Basic framework for creating partial dependence plots in R bgreenwell pdp A general framework for constructing partial dependence (i.e., marginal effect) plots from various types machine learning models in R. bgreenwell pkgbday Determine the birthday and age of any R package on CRAN (warning: experimental and probably useless!) bgreenwell ramify Additional matrix functionality for R bgreenwell treemisc Miscellaneous tree functions bgrich JLstartup A collection of startup functions for analysis. bgrich starkr A package for the calculation of Stark maps in Rubidium-85. bgulbis BGTools Package of helper functions for data analysis bgulbis dirr R package to create default data project directories and provide useful file manipulation functions bgulbis edwr R package for standardized reading, tidying, and transforming data extracted from the EDW bgulbis icuriskr R package to calculate ICU morbidity and mortality risk scores bgulbis themebg bhaibeka MetaGx0 Script to download and curate breast cancer datasets from InSilicoDB bhaskarvk colormap R package to generate colors from a list of 44 pre-defined palettes bhaskarvk cvesearch R API for searching CVEs bhaskarvk docker R Package For Accessing Docker via Docker APIs bhaskarvk fontHind ggplot2 themes based on the Hind fonts bhaskarvk fontMPlus Seven ggplot2 typography themes based on M+ FONTS bhaskarvk iputils Pure R code for working with IP Addresses bhaskarvk leaflet.esri ESRI Plugin for Leaflet R Package bhaskarvk leaflet.extras Extra functionality for leaflet R package. bhaskarvk leaflet.mapbox Mapbox.js Support for Leaflet Widget bhaskarvk tilegramsR R wrapper for Tilegrams bhaskarvk topojsonR bhaskarvk usgazetteer R Data Package for Gazetteer Files from U.S. Census Bureau bhaskarvk widgetframe Embed htmlwidgets in Responsive iframe. bhatturam prius Gene Expression Pathway Analysis R Package bheavner minid A R package for working with BDDS minids bheavner packageTest A basic R package skeleton, with testing and continuous integration bhjuarez estimatoR.2016 bhklab CREAM CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes. bhklab CoreGx Shared code for both PharmacoGx and RadioGx bhklab MetaGx MetaGx bhklab MetaGxOvarian bhklab PharmacoGx R package to analyze large-scale pharmacogenomic datasets. bhklab RPharmacoDB R Interface for PharmacoDB bhklab RadioGx RadioGx and PharmacoGx: Integrated prediction tools for combining radiotherapy with systemic agents bhklab consensusOV Implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer. bhklab genefu R package providing various functions relevant for gene expression analysis with emphasis on breast cancer. bhklab mRMRe R package implementing ensemble methods, such as mRMR bhklab predictionet This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the lat… bhklab survcomp R package for performance assessment and comparison for survival analysis bhlmn PotentialWind R Package to calculate potential winds from wind observations bhlmn WindVerification R Package to process and verify wind forecasts from weather models bhmevik pls The pls R package bhoung trueskill-in-r Implementation of the TrueSkill algorithm in R bhsu4 weightprog weightprog r-package - two-way graphs, visualization, analysis bhuston bhustonUtils package for storing miscellaneous R functions bi-sdal sdalr Package of R functions used at SDAL bi-sdal sdalr.api bi-sdal sdalr.util bibagitbub capstone Capstone Project of R software development bibagitbub farspackage Coursera fars functions bic-mskcc bicrnaseq R package containing all things RNASeq, as implemented by BIC bic-mskcc halo bigbio PepBed The pepBed R-package allow to process bed and bigBed files from peptide evidences bigdataee opendata biggis-project soh Hotspot analysis and stability metrics biggis-project temp-modeling R-code related to temperature modeling (AP3) bigmlcom bigml-r Simple R bindings for BigML.io bigpas face_exp_analysis biips rbiips R package for Bayesian inference with interacting particle systems billchenxi BMRBr R package for downloading individual files from BMRB repo. billchenxi Cpp billchenxi DataScience billchenxi GeneTree Genetic tree files generation and analysis billchenxi NMRRefCorr NMR Reference Correction billchenxi public billdenney PKdata Pharmacokinetic data for testing software with real and simulated data. billdenney pknca An R package is designed to perform all noncompartmental analysis (NCA) calculations for pharmacokinetic (PK) data. billdenney pknca.portation Import and export data from PKNCA using data standards billspat borisr UNFINISHED R package to open and manipulate data files from the Behavioral Observation Research Interactive Software ( BORIS) http://penelope.unito.it/boris/ billspat cedar CEDAR project : Topological Data Analysis Tool using R and Shiny billyhw GSALightning GSALightning: Ultra-Fast Permutation-based Gene Set Analysis billyuanyao WOECredit woe credit billzichos homeR R functions that enable sourcing and plotting of publicly available residential home information from Zillow. bingzhang16 NetSAM Network Seriation And Modularization R package bingzhang16 WebGestaltR R package for WebGestalt bingzhang16 WebGestaltReporter WebGestaltReporter bioarch-sjh bacollite biobakery banocc biobakery melonnpan Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles biobakery sparseDOSSA biobits bbreportr Private R helpers using the pandoc knitr stack biochangjiang biochangjiang.github.io biodatacore biodatacoreMTM biodatacore biodatacoreMatching biodatacore biodatacoreUtils Utilities for 'biodatacore' packages bioimaginggroup bioimagetools https://bioimaginggroup.github.io/bio… bioimaginggroup cmr bioimaginggroup dcemriSpatEnet bioimaginggroup nucim Nucleome Imaging Toolbox bioinf-jku librfn-R bioinf-jku panelcn.mops CNV detection tool for targeted NGS panel data bioinf-jku platt Platt scaling bioinformatist CrossICC An iteractive consensus clustering framework for multi-platform data analysis bioinformatist LncPipe-Reporter A graphical tool for likelet's workflow (multiple interactive plot). bioinformatist LncPipeReporter An R package for automatically aggregating and summarizing lncRNA analysis results. biolabntua moach Multi-Omics Assay Characterization biologicalrecordscentre rYoutheria Access to YouTheria through R biometry FReibier Miscellaneous R-functions from the Biometry group in Freiburg, Germany biometry phenologicalOverlap R-package to compute phenological overlap of two time series of events bioscript bioscript biostatUniBS RcmdrPlugin.RDataXMan biostuff BlockMaxx biostuff CNVPanelizer Reliable CNV detection in targeted sequencing applications biostuff test biothings BioThingsClient.R This is a unified R client for BioThings APIs (http://biothings.io) biothings biothings_client.R This is a unified R client for BioThings APIs (http://biothings.io) biothings mygene.R A R Bioconductor package for accessing MyGene.info services bioticinteractions conn.qk bioticinteractions predict2 Predict2 bioxfu lianjiaScraper biran1990 ssizeRNA Sample Size Calculation for RNA-Seq Experimental Design birdieorbust opencpudemo birmingham-ccr CorporaCoCo A set of functions used to compare co-occurrence between two corpora. birmingham-ccr CorporaCorpus A collection of small corpora prepared by the Centre for Corpus Research. bischrob rRJB This is a package for R to hold functions I commonly use. bjeil beTools Miscellaneous useful functions bjmt universalmotif Motif manipulation functions for R. bjoernkjoshanssen structure-function bjornbrooks PolarMetrics R functions for analyzing seasonal patterns in environmental variables bjornerstedt assist Dialog box command help for Rstudio bjornerstedt scbapi bjornkopperud annotation2slouch bjornkopperud annotation2slouch_old bjornkopperud slouch Slouch in development bjornkopperud slouchbtk personal copy slouch bjornkopperud slouchexp bjsmith r-mvpa R package for doing multi-voxel pattern analysis in R bjstewart1 ClusterTOF Clustering package for CyTOF data bjstewart1 Rcellclustertools Clustering toolkit for single cell data bjw34032 dcemriS4 A Package for Medical Image Analysis (S4 implementation) bjw34032 oro.dicom bjw649 testBW1 bkaplan4 beezdemand R package containing functions to help aid in analyzing behavioral economic demand curve data bkayser NewRelicR R library for accessing New Relic data bkellman ASD_questions bkellman RegressionModelPipeline Pipeline for feature selection, interaction assessment, regression modeling and prediction assessment for 1-1000s of features bkellman SubSampleBalance Genetic algorithm for balancing univariate and bivariate bias of covariates across subsamples. bkellman WeightedMeanCompletion bkkkk gdqData Data package containing donations and runs data for Games Done Quick speedrunning events bkkkk gdqr Access data on donations made during Games Done Quick events from R bkkkk omnifocusR An easy-to-use interface between OmniFocus and R bkkkk sdgq2016 Data about Summer Games Done Quick 2016 bklamer olderbookdown bklamer statprograms bklingen iscatter interactive plotly scatterplot with rhandsontable bkutlu ABAminer bkutlu pzfxparser pzfxparser bkvarda kudusparklyr A Kudu extension for Sparklyr blacknred0 rWatsonPI Load unstructured data to Personality Insights (PI) via post Multipart/Form-data by interacting with PI API. Such an interaction will be posted on JSON format and then stored back into R on the same format as well. User will have the capabilities of reformatting the JSON file into a CSV and exporting such results for analysis. blairj09 cryptor blaquans tricky some tricky R functions blasee fetchR Calculate Wind Fetch in R blasern fairdomhubr blasern fastmetrics An R package to calculate pairwise distances blasern gems general multistate simulation model blasern rdist An R package to calculate pairwise distances blasseigne ProliferativeIndex blasseigne TestRStudioPkgGit just testing workflow between RStudio, Git, making packages, and Travis-CI blauwers rEarthQuakes blernermhc RDataTracker An R library to collect provenance from R scripts. bletcher linkedModels bleutner RStoolbox Remote Sensing Analysis in R bleutner dummy bleutner knit2docx blewy r_package_coursera A test example package for week 4 of coursers course - master software development in R blindedmanuscript LSBP An R package blmoore mandelbrot Mandelbrot set R package blmoore pythonistr Write more pythonic R blmoore rjsonpath JSONPath for R blnash508 EarthquakesNOAA New ggplot2 Geoms to Visualize NOAA Significant Earthquakes Dataset blnash508 cfm R Package for Casablanca Stock Exchange blogsdon dependencyNetworks blogsdon macgrubeR blogsdon metanetwork metanetwork blogsdon synapseUtilities blogsdon utilityFunctions blogsvoices iSAX The iSA package for R blongworth amstools Tools for getting, processing and displaying ams data. blongworth clivartools R Package providing tools for working with WOCE/CLIVAR data in the NOSAMS database blosloos enviMass LC-HRMS trend detection workflow - R package blosloos enviMass_devel Development version of enviMass blosloos enviPat Isotope fine structure calculation - R package blosloos enviPick Peak picking in LC-HRMS data - R package blosloos nontarget Isotope & adduct peak grouping, homologue series detection - R package blueOwl SameSizeKmeansR Same Size Kmeans algorithm in R blueprint-ade tdsbr functions and workflow for generating TDSB progress reports blueraleigh pea blueraleigh pea.toolkits bluosun MR-GENIUS bmannakee mapexr bmannakee smartcallr bmansfeld QTLseqR bmansfeld QTLseqr QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis bmarkslash7 QPot R package for stochastic differential equation quasi-potential analysis bmarkslash7 bagoftricks bmasch NOAA_SPS bmasch RSmoltMon Utilities for Visualization of Columbia Basin Smolt Monitoring Program PIT-tag Data bmbroom ISB-CGC-utils R library of example functions for simplifying creation of Next-Generation Clustered Heat Maps (NG-CHMs) using the ISB CGC bmbroom NGCHMR An R library for creating Next-Generation Clustered Heat Maps (NG-CHM) bmbroom tsvio R library for reading (subsets of) tsv files bmcclintock momentuHMM Maximum likelihood analysis Of animal MovemENT behavior Using multivariate Hidden Markov Models bmccloskey CSI Import timeseries in various formats; interpolate missing data; calculate CSI and related metrics; output CSV and graphical representations. bmccloskey demoPackage bmckay ceaR Cost Effective Analysis In R bmcnellis SDEF.analysis Analysis scripts/functions for San Dimas ecophys project bmcnellis sapflux R package for analyzing, interpreting, and visualizing thermal dissipation sap flux data bmcnellis spaceRobots A 'package' of LANDSAT scripts/functions bmewing VersionControl An R package designed to improve reproducibility without excessive duplication of files. bmewing mgsub A safe, multiple, simultaneous string substitution bmewing readOffice A library for R to read in text from modern 'unstructured' Microsoft Office files. bmihaljevic bnclassify Learning Discrete Bayesian Network Classifiers from Data bmkor hktraffic Display HK Traffic Data from data.gov.hk bmschmidt bookworm-geolocator Geolocation from geonames.org specifically adapted to the needs of library catalog metadata bmschmidt edinburgh Still testing, don't use bmschmidt tidyDFR Minimal tools for reading JStor Data For Research files into R bmschmidt wordVectors An R package for creating and exploring word2vec and other word embedding models bmsw flowDiv bnaras ASSISTant Adaptive Subgroup Selection In Group Sequential Trials bnaras ECOSolveR Embedded Conic Solver in R bnaras SRS Subject Randomization System bnaras bntest Test package for RProtoBuf Dependency check bnaras cubature Cubature R Package bnaras deconvolveR Empirical Bayes Deconvolution bnaras homomorpheR Homomorphic Computations in R bnaras peruseR Resources for Planning a useR! Conference bnaras samr bnaras sglr Sequential Generalized Likelihood Statistics for Vaccine Trials bnasr calcSolar Calculate solar radiation and related variables based on location, time and topographical conditions bnasr hazer A package to quantify image hazeness and identify foggy images bnbsystems ddt bnosac BelgiumMaps.StatBel Administrative boundaries of Belgium based on Open Data available at Statistics Belgium bnosac GAlogger Log R Events and R Usage to Google Analytics bnosac RDRPOSTagger R package for Ripple Down Rules-based Part-Of-Speech Tagging (RDRPOS). On more than 45 languages. bnosac analogsea.ext Extensions to work with the analogsea package. Currently only to use ggmap::geocode at DigitalOcean bnosac pattern.nlp R package to perform sentiment analysis and Parts of Speech tagging for Dutch/French/English/German/Spanish/Italian bnosac spark.sas7bdat Read in SAS data in parallel into Apache Spark bnosac taskscheduleR Schedule R scripts/processes with the Windows task scheduler. bnosac textrank Summarise text by finding relevant sentences and keywords using the Textrank algorithm bnowok synthpop Generating Synthetic Versions of Sensitive Microdata for Statistical Disclosure Control bobaekang icjiaRworkshop A package for ICJIA R Workshop bobaekang icjiar An R package for ICJIA bobbyangelov boyanr R package with functions and templates I use in my daily work. bobbyangelov reda-pkg R Package for EDA bobbyloco bda Code examples and exercises from Bayesian Data Analysis bobdouma kappa_multinomial new metric for multinomial models bobjansen mattR A web framework for R. bobmonkey Functional_Control_Chart Functional Control Chart bobmuscarella ENMeval R package for automated runs and evaluations of ecological niche models. bobsaw contentU Some functions related to USP <905> Uniformity of Dosage Units bobverity RMavericK R version of the program MavericK, for inferring population structure from genetic data. bobverity Rgeoprofile Carries out geographic profiling in R using a Dirichlet process mixture model bobverity bobFunctions My scrappy functions to make life easier. Use at your own risk! bochocki correlatedtraits A laboratory experiment and simulation to measure the impact of trait correlations on evolution during invasions bochocki slackrsheets A hyper-specific R package to facilitate posting data to a Google Spreadsheet from Slack bocinsky FedData Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources bocinsky PaleoCAR Paleoclimate Reconstruction from Tree Rings using Correlation Adjusted corRelation bocinsky paleocar Paleoclimate Reconstruction from Tree Rings using Correlation Adjusted corRelation bodkan admixr Make ADMIXTOOLS fun again! boennecd CFGBoost boennecd benssurvutils boennecd dynamichazard boennecd kmvforlando boersmamarcel myTestR boettiger-lab gpmanagement Gaussian Process Based Management of Ecological Systems boettiger-lab mdplearning Bayesian Learning Algorithms for Markov Decision Processes boettiger-lab pomdpplus pomdp planning and learning in uncertain systems boettiger-lab shea boettiger-lab shea-research Applications of non-parametric Bayesian inference to the optimal control of ecological systems bofei5675 RaMP2 bogdanpotanin MultivariateSwitch Multivariate Selection-Switch model bogdanrau askchisne R package that connects to the AskCHIS NE API. bogdanrau shinyBuilder bogdanstate streetview-sampler Helper functions for sampling points on a road network and downloading associated Google Streetview images. bogfossil AccumC-package bogind GTFStools bogind SIRItoGTFS SIRItoGTFS r package bogind easycsv An R package for easy data loading from multiple tables bokeh rbokeh R interface to Bokeh http://hafen.github.io/rbokeh/ bokov powertrip Power analysis for multivariate effect sizes. bolimorales RegUtils bolus123 MNCC Multivariate Normal Control Chart bolus123 PH1XBAR Phase 1 X-bar Control Chart bomeara BMhyb bomeara ConvertSolution Finds lines in markdown to convert to underscores for student exercises bomeara GREpercentile A simple function to convert GRE scores to percentiles. IN NO WAY AFFILIATED WITH ETS. bomeara KLchecker Package to implement test of Jhwueng et al. 2014 for comparing KL to AIC and relatives bomeara NSFgrantparser Ways to extract grant info from NSF bomeara RateViz A package for visualizing rate matrices. Original use case is visualizing matrices for diversitree and selac, but this is a more general solution. bomeara biosense R package for looking at evolution of spectra bomeara bmhyd bomeara cv CV done with R, markdown, and pandoc bomeara datelife bomeara evolspec bomeara morphystruct Structure, but for morphology bomeara phrapl bomeara phybase Fork for Liang Liu's 1.4 version; used for teaching phylometh bomeara piecewisesim Simple R package for doing a piecewise tree simulation: simulate to a given time period, then simulate from each of the surviving taxa bomeara popularitree R package to subsample a tree to "popular" taxa by various metrics bomeara prepotol Prepare a tree for uploading to OpenTree bomeara selac Model by O'Meara, Chai, and Gilchrist for SELection on Amino acids and/or Codons bomeara sleq A sleek package to deal with sequences in R. Joint O'Meara lab project. bomeara treevo bomeara utilitree Some R utilities for dealing with phylogenetic trees, data, analyses bomeara yearn Simple R package that loads a library if you have it; installs it from CRAN if possible; and tries to install it from github otherwise. bomin8319 DAME_pkg bonStats gcreg General Constraint Regression Models bonartm cheopsr R package for talking to the HPC cluster at the University of Cologne bonartm factorcopula R package for dependence modelling with factor copulas bonmac RedcapData A data management utility support for REDCap repositories bonmac RedcapDqa DQA of REDCap repositories boopsboops spider Official GitHub repository for the R package "Species Identity and Evolution in R" (spider) boost-R FDboost Boosting Functional Regression Models. The current release version can be found on CRAN (http://cran.r-project.org/package=FDboost). boost-R betaboost R wrapper to boost beta regression via mboost and gamboostLSS boost-R gamboostLSS Boosting models for fitting generalized additive models for location, shape and scale (GAMLSS) to potentially high dimensional data. The current relase version can be found on CRAN (https://cran.r-project.org/package=gamboostLSS). boost-R mboost Boosting algorithms for fitting generalized linear, additive and interaction models to potentially high-dimensional data. The current relase version can be found on CRAN (http://cran.r-project.org/package=mboost). booysej africaclimate booysej cridfdata booysej jquery-datatables-editable boppingshoe bootylator Bootstrap Program for CSS Estimates borenstein-lab fishtaco-plot boris109able ChangePointCalc R package for change-points estimation in linear regression model via DP and SGL boris109able R_SGL borishejblum NPflow Dirichlet process mixture of skew t-distributions for model based clustering of flow cytometry data borishejblum TcGSA R package for Time-course Gene Set Analysis borishejblum kernscr Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks borishejblum ludic Linkage Using Diagnosis Codes borisveytsman ltxsparklines R interface to LaTeX spaklines package borumlab response File repository for response-related analyses boshek limnotools A set of tools and commands to utilize high resolution water profile data boshek renso boshek rsoi Download Southern Oscillation Index and Oceanic Nino Index boshek samfunr boshek seabirdR Collection of function to process seabird data in R bosoa TensorFactorization botanyhelp Remdata R package with data frame for disasters wordwide from 1900-2008 botanyhelp Rufosightings An R package of ufo sightings boutroslab HTSvis A web app for exploratory data analysis of high-throughput screens (HTS) bouwith saitoFuns1 bowerth cneo2016 Country Note Example Economic Outlook 2016 bowerth countrynote bowerth estate Supporting package for real estate analysis bowerth mlscopus bowerth nsoApi retrieve and harmonize data from national statistical offices bowerth screening data screening for R bowerth stan bowerth stanData boxiangliu manhattan ggplot2-based Manhattan plot boxiangliu sinib Sum of Independent Non-identical Binomial Random Variables boxiangliu vsea Variant Set Enrichment Analysis boxizhang boxgooglemap boxizhang boxknapsack boxizhang boxlab1 boxizhang boxlinre boxizhang boxridge boxuancui DataExplorer R package to simplify Exploratory Data Analysis boxuancui eda R package for exploratory data analysis boydorr BCI boydorr ProgInR Programming in R helper package boydorr RDiversity R package for diversity measurement boydorr rdiversity rdiversity - An R package for measuring similarity-sensitive diversity boyuanhuang homeworkPackage boyuren158 DirFactor bozenne BuyseTest Generalized Pairwise Comparisons bozenne MRIaggr My package bozenne butils Miscellaneous functions bozenne butils.base Tools to source R code or install R packages bozenne lava.penalty lava plugin allowing regularization terms bozenne lava.reduce Latent variable models with linear predictors bozenne lavaReduce Latent variable models with linear predictors bozenne lavaSearch2 Tools for model specification in the latent variable framework (add-on for the lava package) bozmik gseaK A modified version of the Gene Set Enrichment Analysis (GSEA) with applying a Gaussian Kernel Density Estimator instead of a histogram. bpbond dataprov Easy data provenance tracking bpbond gcamdata GCAM data system rewrite bpbond luzlogr Lightweight logging for R scripts. bpfaff mcrp Multiple criteria risk parity optimization with respect to higher moments bpfaff rbtc R package for Bitcoin API RPC-JSON bplloyd Core bplloyd CoreHF bplloyd CorePE bpollner aquap2 Aquaphotomics NIRS Analysis V2 bpoweski R-insights R library for querying New Relic Insights bprice2652 gfmR This is the developmental R Package for Group Fused Multinomial Logistic Regression bquast EconometricsUsingR Package to accompany the Handbook of Statistics: Econometrics Using R bquast RDDtools R package for Regresssion Design Discontinuity bquast RcmdrPlugin.GVC Graphical User Interface for decompr using Rcmdr bquast RcppExperiments bquast ShinyGadgetWizard bquast blockchain Blockchain in R, code from: http://bigdata-doctor.com/building-your-own-blockchain-in-r/ bquast datasets.load Tools for view datasets in R bquast decompr GVC decomposition in R bquast diagonals block matrix and other fat diagonals bquast ember An R wrapper for the Ember Charts library using htmlwidgets bquast explore single function for exploring the labels of variables of haven imported data frames bquast gvc Global Value Chain tools bquast learNN Examples of neural networks bquast multilang output documents in multiple languages from a single source rmarkdown bquast recode Tools for recoding data bquast rnn Recurrent Neural Networks in R bquast save.objects An RStudio addin to save objects from the Global Environment bquast sigmoid several sigmoid functions and a wrapper with SoftMax bquast wiod Data sets from the World Input Output database, for the years 1995-2011 brachunok betterR My personal R package brad-cannell bfuncs A random smattering of Brad's Functions brad-cannell myFunctions My random functions brad-cannell my_functions My random functions bradduthie gamesGA Finds optimal strategies for sequential symmetric games using a genetic algorithm bradfordcondon RtreeDistancesandNoises bradfordcondon WGPAN Whole-Genome Pairwise Alignment Noising bradleyboehmke KraljicMatrix An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio bradleyboehmke anomalyDetection An R package for implementing augmented network log anomoly detection procedures bradleyboehmke gonogo An R package that implements 3pod, 3podm, and Neyer Sensitivity Test Procedures bradleyboehmke harrypotter An R Package for the Harry Potter Book Series bradleyboehmke myfirstpackage Package building 101 training bradleydrayton pipeline Web platform for data, modules and glue used to construct pipelines. bradleyfay spoRts An R package to ease access to sports data bradleyjeck epanetReader Read text files in Epanet's .inp and .rpt formats into R bradleyjeck pythagmeans A repo for learning about testing and packaging R code bradleyswilson hrrp R package for working with 2015 Housing Reconstruction Survey Data bradnelms CellMapper bradnelms CellMapperData bradwest-wk xbrlr Functions for analyzing and visualizing XBRL taxonomies bragqut tidymcmc A tidy function for objects of class mcmc.list braithwaite MGRASTer API Client for the MG-RAST Server of the US DOE KBase braithwaite statistical-learning bramtayl IGExtract Chunk text into institutional grammar components bramtayl datastepr bramtayl easyformatr bramtayl rinterface Tools to create interfaces in R bramtayl sprintfr No description or website provided. bramtayl strptimer No description or website provided. brandenberger rem R-package for relational event models (one- and two-mode networks) brandmaier deconstructR R package deconstructR for disintegrating plots brandmaier onyx brandmaier onyxR Starting Onyx from R brandmaier relcs RELCS: Random Effects Latent Change Score Models brandmaier semper brandmaier semtree Recursive Partitioning for Structural Equation Models brandmaier textplot R package for plots using characters only brandonat portfoliotools portfoliotools brandseye brandseyer An R library that provides access to the social media data stored in a BrandsEye account brascoball ggquik Quick Plotting ggplot2 Wrapper brascoball hattyr Custom libraries for use at redhat brasmus GHE R-code for demonstration purposes of the greenhouse effect (GHE). brasmus preciparea brasmus replicationDemos braunm BD2015 private braunm CppADutils utilities for using CppAD with R and Rcpp. Not released for public use. braunm ads braunm bayesGDS Functions for Braun and Damien (2015) Scalable Rejection Sampling for Bayesian Hierarchical Models braunm sparseHessianFD R package for estimate sparse Hessians braunm sparseMVN braunm trustOptim Trust region nonlinear optimization, efficient for sparse Hessians braverock FinancialInstrument braverock PerformanceAnalytics braverock PortfolioAnalytics braverock blotter braverock factorAnalytics braverock nse braverock quantstrat brbatv lab3 brbatv lab4 lab4 brbatv lab5 Lab5 : API Google R Package brbatv lab7 lab7 package brbnci pact Predictive Analysis of Clinical Trials brcourts tjdf Webscraping da Jurisprudência do Tribunal de Justiça do Distrito Federal breather brightbox Peek into any blackbox learner (including ensembles) with brightbox brechtdv DALY The DALY Calculator brechtdv FERG DALY Calculation Framework for WHO/FERG brechtdv FERG2015 DALY Calculation Framework for WHO/FERG - 2015 revision brechtdv HFA R interface to European Health For All Database (HFA-DB) brechtdv QMRA Parametric models for Quantitative Microbial Risk Assessment brechtdv bd Helper functions brechtdv cystiSim Taenia solium ABM brechtdv prevalence Tools for prevalence assessment studies brechtdv rineq Statistical Analysis of Health Inequalities brechtdv trends Trend Analysis Shiny App bredamatt Z-measures Z-measures for estimating the probability of bank insolvency bredamatt zmeasures Z-measures for the probability of bank insolvency bredamatt zscores These zscores measures are used for estimating the probability of bank insolvency. They are based on the paper "Nonstationary Z-score measures" in the European Journal of Operational Research by Davide Mare, Roberto Rossi and Fernando Moreira (2017). For more info see: https://www.researchgate.net/publication/311566128_Nonstationary_Z-score_measures brendan-R boxr A high-level R interface for the box.com API brendan-R brocks Miscellaneous R Functions brendan-R nps Watch brendan-r NPS 🚦 Stat functions for the Net Promoter Score brendan-r boxr :package: A high-level R interface for the box.com API brendan-r brocks :eyeglasses: Miscellaneous R Functions brendan-r googdown brennanpincardiff drawProteins Creating package to draw proteins from Uniprot API brent0 kmlbuilder Create kml, used in google earth, from R dataframes. brentfagan mixem mixem brentkaplan beezdemand R package containing functions to help aid in analyzing behavioral economic demand curve data brentonk coefbounds Nonparametric bounds for regression with interval-censored outcomes brentonk pbivnorm Vectorized bivariate normal CDF in R brentonk polywog R package for flexible functional form estimation via oracle-penalized basis regression brentonk polywog-package R package for flexible functional form estimation via oracle-penalized basis regression brentonk psci8360 brentp bootstrip Resampling residuals of a linear model to determine significance with bootstrap-like sub-sampling brentp celltypes450 adjust for cell-type composition in 450K data using houseman's and other methods. brentp clustermodelr fit models to clustered, correlated data (R package) brentpm2 FIELD_PRO_ANALYSIS brettcbaker TestPackage brfitzpatrick forestviews visualise paths through random forests: brian-bot bridger brian-bot githubr Making it easy to talk to GitHub from R brian-bot rCGH brian-bot rGithubClient Making it easier for R to talk to github brian-bot velib accessing data about JCDecaux's self-service bicycles brian-bot xmlstats R interface to xmlstats API brian-j-smith qibm Quantitative Imaging Biomarker Modeling brianbennettphd goSTAG The goSTAG Bioconductor Package brianboonstra ragtop Financial derivatives pricing and calibration using linked equity and credit models briancohn retina Tools for visualizing and comparing data from vertebrate retinas briandconnelly acewater 🌊 Retrieve Water Conditions on the Lake Washington Ship Canal briandconnelly avidaR Tools for reading and manipulating Avida data sets briandconnelly bdcR My personal R environment briandconnelly colormod R package for color manipulation briandconnelly emulsifyr briandconnelly ggplot2bdc Collection of themes and tools for modifying ggplot2 plots briandconnelly growthcurve 📈R package for analyzing biological growth briandconnelly lato Minimal and flexible 'ggplot2' themes using 'Lato' Typeface briandconnelly microtiterr Tools for working with microtiter plates briandconnelly mutationtree Tree-based model for studying mutation dynamics briandconnelly numerous R package for interacting with the Numerous API briandconnelly pronto R package for retrieving data from Seattle's Pronto cycle sharing system briandconnelly pushoverr Send push notifications in R using Pushover briandconnelly ripinfo Look Up Information about an IP Address using ipinfo.io briandconnelly softermax 🔬Read Exported Data from SoftMax Pro briandk granovaGG Bob Pruzek and Jim Helmreich's implementation of Elemental Graphics for Analysis of Variance briandk loadr Defensive package loading for R briangottfried epivizrChart briangottfried epivizrPolymer brianmacdonald-ml oraobjectstore R utilities to connect to the Oracle Object Store Cloud Service brianstock MixSIAR A graphical user interface (GUI) for MixSIAR, creating Bayesian mixing models in R brianwonch mediamunger R Utilities for accessing and transforming media data - from Kenshoo, social networks and display networks. briatte ggnet Network visualization with ggplot2 briatte ggnetwork Geoms to plot networks with ggplot2 briatte qogdata Functions to manipulate Quality of Government data and related material briatte rdspl Automatically exported from code.google.com/p/rdspl briatte tidykml Turn KML Files into tidy data frames: bridachristian DataQualityCheckEuracAlpEnv bridachristian testpackage briencj asremlPlus asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models brightling BrightSight R Data Analysis Framework: Data Structure/Data Transform/Data Process/Data Report brigittepeter RTutorWaterPollutionChina briglx cats briofons R-Package-RJIRA Interface between R and JIRA System by Rest API bristolmathmodellers biddmodellingcourse Slides and Practicals for the BIDD modelling short course brlancer blance My personal R convenience functions brlancer bmisc My miscellaneous R functions broadinstitute ichorCNA Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing. broadinstitute inferCNV Inferring CNV from Single-Cell RNA-Seq broadinstitute proteomics brodieG alike Verify S3 Object Structure brodieG ansistyle Style Console Output With Ansi Escape Sequences brodieG covrtest Stub Package to Test covr Issues In MRE brodieG cstringr Low Level C String Manipulation For R Packages brodieG diffobj Compare R Objects with a Diff brodieG matchcall Match Calls in R Dynamic Stack brodieG pckgA Package Used for Troubleshooting setOldClass Issues brodieG pckgB Package Used for Troubleshooting setOldClass Issues brodieG recsub brodieG treeprof Visualize Rprof Results as a Tree brodieG unitizer Easy R Unit Tests brodieG validate Keep the Garbage Out brodieG vetr Keep the Garbage Out brodsa IClust Imbalanced clutering brodsa wrsk Robust (weighted) and sparse k-means clustering brooke-watson thesis brookiem86 dDIF Project2 brooksandrew Rsenal R package: a(Rsenal) of assorted functions and apps brookspg data.profile Profiling tool for dataframes brouwern DRmencia DRmencia brouwern wildlifeR Wildlife datasets brownianEmotion catDist brry OSMscale project lat-long coordinates, easily download background maps and add a correct scale bar brry berryFunctions My misc functions package. Notable: colPoints, horizHist, logAxis, pointZoom, smallPlot, lsc brry extremeStat Fit, plot and compare several (extreme value) distributions by means of a plot with return periods on a linear scale brry installB update R package locally brry knitPres knit both handout and presentation version of .Rnw slides with good TeX error logging brry mhmVis visualisation of mHM input and output files, including netcdf files brry rdwd download climate data from DWD (German Weather Service) brry rfs Rhine Flood Seasonality brry rskey rstudio addins for keyboard shortcuts brry rstudioberry rstudio addins brry shapeInteractive GIS-like interaction with shapefiles: zoom in ESRI shapefile plots, show or change attributes by clicking on them in a plot. Currently only works for Line-shapefiles. brsantos baquantreg brsr tsk Trimmed Spearman-Karber Method brubinstein diffpriv Easy differential privacy in R brucehoff Rssh2 This is an R wrapper for libssh2 brucehoff mPowerProcessing No description or website provided. brudis-r7 facetedcountryheatmaps brudis-r7 hping Utilities to work with `hping` output in R brudis-r7 logentries R interface to the LogEntries API brudis-r7 mtblr R package to work with mtbls brunaw vagalumeR R package to access the Vagalume API brunocontrino Doscheda brunomssmelo RcextTools Este pacote se propõe a oferecer ferramentas de análise de dados úteis à auditoria no âmbito da atividade de controle externo. brunomssmelo RcvmWrangler Pacote que permite o download de dados publicos relativos aos fundos de investimento brasileiros brunomssmelo RppsAnalytics Pacote voltado para a analise de desempenho e de conformidade dos investimentos dos RPPS. brunomssmelo RppsWrangler Pacote para importação de dados relativos aos RPPS brunomssmelo TseWrangler A package that downloads and imports brazilian elections data from the brazilian Supreme Electoral Court (TSE) bryanhanson ChemoSpec R functions for the chemometric analysis of spectra bryanhanson ChemoSpec2D Exploratory Chemometrics for 2D Spectroscopy bryanhanson ChemoSpec2Ddata 2D NMR Data Sets for Use with ChemoSpec2D bryanhanson ChemoSpecMarkeR Functions to Identify Biomarkers in NMR Spectra bryanhanson FuncMap Hive plots of function calls in R packages bryanhanson HandyStuff Handy R Functions & Stuff bryanhanson HiveR An R package for creating and plotting 2D and 3D hive plots. bryanhanson LindenmayeR Lindenmayer or L-Systems in R bryanhanson NMRdb NMR Spectra, Peak Database and Related Functions bryanhanson SpecHelpers Spectroscopy Related Uilities bryanhanson exCon exCon is an R/JavaScript tool for exploring topographic-like data sets bryanhanson photoSpec An R package to use a photograph as a spectrophotometer bryanhanson readJDX Import spectroscopic data in the JCAMP-DX format bryanmayer dfReg This R package turns regression objects into data.frames bryanmayer likert_custom bryanmayer multdr bryanpholman PotentialWind R Package to calculate potential winds from wind observations bryanvictor BibWrangleR brycefrank forvol An R package for tree volume equations. bs-2011 ALpath bs-2011 ChapterCat Categorize chapters based on skill bs-2011 bitwise chapter categorization chapter bs77 CourseraFinalPkg class project bs77 GScholarAlert2DF A set of functions to convert the results of an ongoing Google Scholar Alert feed from your gmail to an R data frame bsaul geex Framework for estimating parameters and the empirical sandwich covariance matrix from a set of unbiased estimating equations (i.e. M-estimation) in R. bsaul inferference An R package for causal inference with interference ('inferference') bsaul interferenceSim Simulates datasets and computes estimands for causal inference with interference. bsaul patientProfileR bsaul sandwichShop bsaul wgee bschiffthaler BatchMap Fork of OneMap for fast computation of high density linkage maps bschneidr r_html_select R functions to create interactive functionality in HTML documents using only client-side HTML and JavaScript bsmiller25 rplotlib bsouhaib M4comp Data from the M4 time series forecasting competition bsouhaib tsexplore Time Series Feature Extraction and Visualization bsouhaib tsfeatures Time Series Feature Extraction bssherwood rqpen Penalized Quantile Regression bstewart stm An R Package for the Structural Topic Model btamasi map1d R visualization for one-dimensional maps. bthe lodscores bthe rgadget Rgadget is a set of useful utilities for gadget btjones16 ocean An R package for processing and visualizing oceanographic data btjones16 sequential-analysis-software http://btjones.scripts.mit.edu/index.… btmonier bday Birthday gift generator btmonier fractus Fractal generation in R btmonier ggDESeq A visualization suite for DESeq related data frames that implements ggplot2 aesthetics. btmonier ggviseq Make rapid visualizations of RNAseq data in R btmonier gingr Material calculator to make gingerbread stuff... btmonier vidger Make rapid visualizations of RNAseq data in R btskinner OSRcppM Rcpp package to compute route distances and duration using OSRM btskinner crosswalkr Rename and Encode Data Frames Using External Crosswalk Files btskinner distRcpp A Package To Compute Distance-Weighted Measures Using Rcpp btskinner rscorecard R wrapper for U.S. Department of Education College Scorecard Data API btupper catecolors Discrete 256-color table devised by Glasbey et al suitable for catagorical coloring. btupper ecomon Watch btupper fishboxes R tools for working with NMFS One Degree, Quarter Degree and Ten Minute Squares (ODS, QDS, TMS) btupper nearth R tools for easy navigation and reading of locally stored data files from [Natural Earth](http://www.naturalearthdata.com/) btupper neracooscrawler A limited THREDDS crawler for programmatically working with NERACOOS thredds server btupper obpgtools R tools for use with raster data originating from the Ocean Biolog Processing Group btupper rscripting Watch btupper spnc A simplified interface between spatial classes and NetCDF data sources. bubj samplr buenrostrolab easyLift R package for easy mm9 <-> mm10 / hg19 <-> hg38 bulksoil tidyMB A Set of Tools and Wrappers for Tidy Microbiome Analysis in R bunhoel anvil Place where things happen. bunhoel qGaussian burch-cm farsdata Read and manipulate FARS data burch-cm noaaview tools to visualize NOAA earthquake data burchill zplyr My personal bundle of functions burgerga icytracks R package to read icy track files burgerga mdftracks R package for reading and writing MTrackJ Data Format (.mdf) files burgerga shinyTime A timeInput widget for Shiny burgerga toxplate R Package for creating plate layout mappings buriom denoiSeq R package for Differential Expression Analysis burjandedes randomForestDrawer burrm lolcat The public release of the lolcat statistical package for R burtonlueth webPrices webPrices: Scrape pricing with rvest and the tidyverse business-science alphavantager A lightweight R interface to the Alpha Vantage API business-science sweep Extending broom for time series forecasting business-science tibbletime Time-aware tibbles business-science tidyquant Bringing financial analysis to the tidyverse business-science timekit A collection of tools for working with time series in R business-science timetk A toolkit for working with time series in R butterflyology ordiBreadth Package repo for R package ordiBreadth butterflyology spaceMovie A color palette for a movie set in space bvegetabile ccber Conte Center - Behavioral Entropy Rate bvegetabile gpbalancer gpbalancer: an R Package for Optimally Balanced Gaussian Process Propensity Score Estimation bvegetabile gpexperiments Experimenting with code related to Gaussian Processes bvhest KNMIr download climate data from the KNMI (Dutch meteorological institute) with R bvidgen RPackage bvidgen Rccf Three basic functions for calculating Autocorrelation and Cross-correlation in R bvieth powsim bvieth powsimR Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses. bvieth powsimRNAseqCourse bvindex Rbvi An R package to calculate the Biological Value Index (Sanders, 1960) bvnlab SCATTome Single-cell analysis of targeted transcriptome (SCATTome) program to predict drug sensitivity of single cells within human tumors bwaismeyer caser R package for converting strings and string vectors among common case types. bwlewis R4P An R library for Processing. bwlewis RSQLServer SQL Server database interface for R on Windows bwlewis betfair Betfair API for R bwlewis crosstool An experimental, very generic control/communication widget for use with the crosstalk and htmlwidgets packages. bwlewis doRedis R/foreach Redis backend for parallel computing bwlewis feathercache Simple networked object cache bwlewis fls The Kalaba-Tesfatsion Flexible Least Squares method for R. bwlewis iqfeed An R package that interfaces to DTN IQFeed over TCP/IP bwlewis irlba Fast truncated singular value decompositions bwlewis lazy.frame Lazy person's file-backed data frame bwlewis lz4 LZ4 Data Compression and Decompression for R bwlewis python Simple Python bindings for R derived from https://github.com/rstudio/tensorflow bwlewis rredis R client for Redis bwlewis rthreejs Three.js widgets for R and shiny bwlewis tcor Fast thresholded correlation mattices bwlewis uiwidgets Experimental, generic HTML user interface elements for use with the crosstalk and htmlwidgets packages. bwlewis x3dom Tools for creating x3dom and d3.js graphics with R and Shiny bwrc astrid-r Automatic Structure Identification - An R-package for finding statistically significant attribute interactions with classifiers bwrc cocoreg-r Development repo for the CRAN package "cocoreg" bwrc colibri Platform for automating analyses of physiological time series in R. bwrc corecluster-r Clustering with Confidence - An R-package for Finding Clusters with Statistical Guarantees bwrc edf Read data from European Data Format (EDF and EDF+) files in R. bwrc embla-r An R-package for reading physiologic signal data stored in the Embla Data Format (EBM). bwrc empatica-r An R-package for reading physiologic signal data recorded with a an Empatica device. bwrc neurone-r An R-package for reading physiologic signal data recorded with a Mega Electronics neurOne Device bwrc semigeom-r Semigeometric Tiling of Event Sequences bwrc shimmer-r An R-package for reading physiologic signal data recorded with a Shimmer device. bwringe hybriddetective bwringe parallelnewhybrid bwtian Rprofile Make My .Rprofile portable everywhere bwtian Rtemplate Templates of Build a R packages by using RStudio, Github, Travis-IC, SparkleShare, roxygen2 bwtian TIR A package for Thermal Infrared Remote Sensing data analysis and mapping bwtian bwtian.github.com bwtian cache bwtian code bwtian data bwtian figs bwtian geothermaR A R package for Geothermal and Geoheat Energy analysis and assessment bwtian glossaR Create glossaries use R for Latex writting bwtian ipaper bwtian learnRviaCode Learn R via Source Code: bwtian opts bwtian presentations bwtian publishes bwtian refs bwv988 eusocialr Some functions to work with Eurostat data in R byandell CCSanger Pull Sanger features for CC founder strains byandell CausalMST Causal Model Selection Hypothesis Tests byandell DOread Read DO data from RDS files byandell Rbiodalliance R wrapper for biodalliance.org byandell corheatmap byandell ewing Ewing's Quantitative Population Ethology byandell pda Practical Data Analysis for Designed Experiments (book add-on) byandell qdg QTL Directed Graphs byandell qtl Branch of Karl Broman's R/qtl byandell qtl2feather R/qtl2 package using feather to store genotype probabilities byandell qtl2ggplot Extension of R/qtl2plot to ggplot2 byandell qtl2pattern Pattern support for R/qtl2 byandell qtl2shiny Shiny app for R/qtl2 byandell qtlbcsft Tools for testing QTL BCsFt calculations byandell qtlcmst QTL Causal Model Selection Tests byandell qtlhot QTL hotspot inference byandell qtlnet Infer QTL genetic architecture and causal network for set of correlated traits byandell qtlview Utilities to view QTL results on the Web byapparov rGoodData R package for GoodData report exports byapparov rdqa Data Quality Logging for R byapparov recommender R Library with product recommendation algorithms for retail bynjh007 exp_array Packages for analysis of gene expression microarray byrolew SuperFarmerMAPA Projekt faza 2 byzheng eLiterature Convert literature into ebook byzheng leafletplugins Plugins for R package leaflet byzheng ncdf4cf A Interface to data files written using Unidata's netCDF library with CF conventions. byzheng rproject Project management in R byzheng shinydivajs a Shiny wrapper for diva.js bziarkowski euRobasket R package for European basketball data. bziarkowski plkR plkR c-langille pStepwise R package - Model selection using p-values c-langille psubsets R package - stepwise model selection based on p-values c06n helpers c3h3 LearningHS c3h3 LearningNotes c3h3 QuantitativeBacktestingTools c3h3 TheanoForDummy20150423 c3h3 atrax c3h3 c3h3.github.io c3h3 c3h3notes c3h3 cognitivePy c3h3 cognitiveR c3h3 colatouR c3h3 hello-meteor c3h3 hi-celery c3h3 hi-meteor-20160120 c3h3 kico c3h3 learning-gitbook c3h3 learning-meteor-velocity c3h3 meteor-accounts-azure-example c3h3 meteor-chatroom c3h3 play-youtube-apis c3h3 tradeR c3h3 try-gae-hsnu-crc c3h3 try-meteor-http c5sire GTDMS Global Trial Data Management System c5sire abc c5sire agricolae c5sire bdal c5sire bdal2 c5sire biomart2 c5sire brapi c5sire brapiTS BrAPI Test Server c5sire brapiUI c5sire brapps c5sire ciptools Tools to help standardize R package development at CIP. c5sire climclass tools to derive climate classifications based on weather data c5sire cropont c5sire datacheck Tools for checking data consistency c5sire datadict c5sire datatools c5sire e4 c5sire e5 c5sire eden c5sire efg c5sire exsic c5sire fars c5sire fbLocalities c5sire fbcollect c5sire fbcrops c5sire fbdesign c5sire fbglobal c5sire fbhelp c5sire fbmaterials c5sire fbmet c5sire fbmodule c5sire fbprogram c5sire fbprstages c5sire fbsites c5sire ghk c5sire hallo c5sire hello c5sire helloYou c5sire helloworld c5sire hidap2 c5sire hik c5sire licor Some small utility tools to process molecular marker data c5sire myp c5sire quipu c5sire sbgui c5sire scrud c5sire test10 c5sire test5 c5sire yml2shiny c97sr SRileyIDD c97sr idd R Package for Infectious Disease Dynamics cBioPortal cgdsr R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS) cReedHranac batwintor ca-vi Climatology_Package Build and maintain a R package for the Chair of Climatology at TU Berlin caariasr pcaPA cabadsanchez cabad.dummy Dummy R package cabajgtr benstools My personal package cabajgtr shiny.forecast Forecast App with Shiny Interface cablegui fars FARS dataset for R Class cabralhenrique QPVutils cabralhenrique myR cacha0227 ncappc ncappc for NCA calculations and population PK model diagnosis caesar0301 movr Human mobility data (in form of ) analysis and visualization in R. caesar0301 omniR Package containing useful functions in my researches of human behavior science, mostly for spatio-temporal data. caesar0301 ppai 上海车牌拍卖的读秒数据，以及分析数据的若干R函数 cafeine05 WikiSocio MediaWiki API Wrapper cafletezbrant cafletezbrant.github.io cafletezbrant flowClean Homebase of the flowClean flow cytometry package cafreeman parseExperimentData Parse Experiment Data cafreeman readQP An R package for handling quadratic programming problems in CPLEX_LP files cahhansen CCFMR R Package for Exploring Change Factor Methodology cahhansen HABForecast R Package for creating forecasts of HABs cahhansen NWMLowFlows R Package for processing and evaluating retrospective data from the National Water Model. cahhansen Shiny-WaDE-Data-Explorer A simple data exploratory tool, built using R and Shiny. cahhansen Snowbedo Package for modeling snowmelt and streamflow in semi-arid, snowpack-driven mountainous watersheds caijun TTmisc TTmisc: Tony Tsai Miscellaneous R functions caijun geoChina An R package for geocoding address by calling the Google or Baidu Geocoding API and coordinate conversions for WGS-84, GCJ-02 and BD-09 geodetic system caijun humidity An R package for calculating water vapor measures, such as vapor pressure, absolute humidity, specific humidity, and mixing ratio, from temperature and relative humidity. caimiao0714 MiaoCom A R package for calculating comorbidity index for epidemiologists caimiao0714 MiaoTruck functions for tidying, analyzing and visualizing the NSF truck data caimiao0714 farfunction Final project for "Building R packages" in Coursera series "Mastering software development in R" caimiao0714 rejectionsampling caitlinjones halo calahan Calahanlab calbertsen argosTrack R package for fitting animal movement models to Argos (or other types of location) data calbertsen caMisc R package with different functions calbertsen covafillr R package calbertsen otoclass R-package for otolith classification caleb-easterly mixage caleb-easterly sfceHPV A mathematical model to study sexual behavior structure and the impact on HPV vaccination benefit estimates. calebki rctmiss calebki94 rctmiss caleblareau BuenColors R package of colors for the Buenrostro Lab caleblareau RABIT caleblareau chromVARxx Additional functions added to chromVAR caleblareau easyLift R package for easy mm9 <-> mm10 / hg19 <-> hg38 caleblareau gchromVAR Cell type specific enrichments using finemapped variants and quantitative epigenetic data caleblareau indRop An R package for basic indrop analyses and data handling caleblareau scTools caleblareau yolo R package for handling large, sparse genomic data calenwalshe eccentRicity A signal detection model of occluding targets in natural backgrounds. calligross ggthemeassist An RStudio addin for ggplot2 theme tweaking calligross pastehistory RStudio add-in to paste the last console command calligross reinstallr Reinstall missing R packages callistosp dataTools Tools for creation of datasets to be used in NONMEM for PK/PD modeling callumgwtaylor hdxr A package, storing functions to make my life easier when getting data from Humanitarian Data Exchange callumgwtaylor snakes Package containing data from the WHO Snake and Snake Antivenom Database For Use In R cambroise LITree R package for Latent Tree Aggregation Gaussian Graphical Inference with missing variable cameronbracken cadswes-utils R packages with use at CADSWES cameronbracken canvasDevice Fork of the canvas project, an R package that implements the javascript CanvasRenderingContext2D API, by @jefferyhorner cameronbracken pgfSweave Quality graphics and speedy compilation with Sweave cameronbracken swfDevice R graphics output in swf (flash) format. camilogavo FirstShinyApp This will be my first Shiny app. In this case I'm learning how to build a R package, write a code fora shiny app in R and plot a time series with all relevant information cammlab TrAM camposfa ClimGrid An R package for obtaining and analyzing global climate oscillation indices and gridded climate data camposfa paceR An R package for the University of Calgary's PACE Database camposfa plhdbR An R package for working with the Primate Life History Database camrinbraun BioOce camrinbraun sharkSiteMap Download, format, plot, and output shark track data daily for web hosting. camroach87 gefcom2017 GEFCom2017-D modelling and forecasts. D stands for defined-data track. camroach87 myhelpr Various helper functions camroach87 semisupervisr Semi-supervised training functions camroach87 validatr Validates predictions camult DRP R package to calculate deregressed proofs, and its reliabilities and weights. camult easyGEN A suite of packages for quantiative genetics analysis and more! camult easyGWAS R interface to perform GWAS using Factored Spectrally Transformed Linear Mixed Models (FaST-LMM) canagnos smle Streaming Maximum Likelihood Estimation cancercentrum gginca graphs for INCA ad RCC data cancercentrum incavis Functions to export data from INCA to Varden i Siffror cancercentrum rccepi Epidemiological calculations for RCC data cancercentrum rccmisc Miscellaneous R functions for the Regional Cancer Centers cancerdatasci ceres Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens cancerpolicy bcimodel Modeling package for the Breast Cancer Initiative at Fred Hutch cancolle LINENotify Push Notifications using LINE App cannin paxtoolsr No description or website provided. cannin pheatmap A fork of CRAN pheatmap that colors NA entries black cannin rcellminer cannin rcellminerData cannyp3 R cannyp3 choiceBasedConjoint canonicalized predictClicks cantonfe Itross An individual tree open source simulator cantonfe sitree Single tree simulator cantonfe sitreeE Extensions to sitree caom peakOmics An R package for LCMS-based metabolomics data analysis and annotation capitalone otvPlots ovtPlots: An R Package for Variable Level Monitoring caprice-j ggbash A simpler ggplot2 syntax, saving half of your typing. caprice-j ggconf Faster appearance modification of ggplot2 capturelabs satconcordance R package to concord new and old SAT values caramirezal plotFun Compile useful plots caranha EvoGCP Swarm approaches for the 3-Graph Coloring Problem carbonmetrics crud Functions to weed the crud out of your data carbonmetrics crunch crunching of survey data carbonmetrics dung Utility functions for data mining. cardano r-alpha_beta_attribution_analysis cardcorp AWR DEPRECATED, visit the AWR repo on GitLab cardcorp AWR.Kinesis Amazon Kinesis Consumer Application from R for Stream Processing cardcorp fbRads Analyze and manage Facebook ads from R using this client library to access their Marketing APIs cardcorp kineRic DEPRECATED, use AWR.Kinesis instead cardcorp kmR Basic R client to Amazon's Key Management Service (KMS) cardiomaths kinetx Functions to analyse flow-cytometry data describing time-dependent platelet activation cardiomaths plafun Code to analyse high-throughput platelet function assays cardiomoon Kormaps cardiomoon Kormapsdata No description or website provided. cardiomoon dplyrAssist cardiomoon editData cardiomoon ggiraphExtra cardiomoon ggplotAssist cardiomoon kormaps2014 cardiomoon korspacing cardiomoon moonBook version 0.1.0 cardiomoon moonBook2 cardiomoon mycor R package mycor cardiomoon semMediation cardiomoon webr cardiomoon ztable version 0.1.0 cardosopmb red careyhuh binocularMismatch analysis of PACU-generated tables for SF relevant information cargomoose ggraptR Rapid and Pretty Things in R : A shiny graphical user interface for your favourite ggplot graphics in R cargomoose ggraptR1 A repository for the development of ggraptR, the R package on CRAN. replaces the old "raptr" repository cargomoose raptR Rapid and Pretty Things in R : A shiny graphical user interface for your favourite ggplot graphics in R cargomoose stackatto carian2996 cumstats Cumulative Descriptive Statistics carian2996 secrets Project to create a funny package to send secret messages carinademel RNAlife carjed smaug carl-mc sidedata SIDE: New Spatial Data on Ethnicity carlbfrederick shinyBrewLog Brewday log app to facilitate analyzing process data. carlbona idd Data-driven incidence difference-in-differences estimators carleshf loadxls Wrapper of (R) XLConnect for fast and easy load of MS Exel files. carleshf postRexposome carleshf r2pptx carleshf rexposome carleshf shinyRexposome carlganz CSP2017 Shiny apps related to poster at Conference for Statistical practice 2017 in Jacksonville carlganz RcppXLSXwriter carlganz entropC Rewriting the entropy package in C++ using Rcpp carlganz formancer Wrapper for the formancer JavaScript library in Shiny carlganz rintrojs Wrapper for the Intro.js library carlganz shiny-server carlganz shinyCleave Adds [Cleave.js](https://github.com/nosir/cleave.js) functionality to Shiny inputs carlganz svrepmisc carlise laplaceR Exploring data parallelism and optimization in R carlise linearR Exploring data parallelism and optimization in R carlislerainey compactr An R package to produce graphics with more compact axis notation. carlislerainey separation A (developing) R package that implements the ideas in my paper "Dealing with Separation in Logistic Regression Models" carlmurie RNASeqUtilities carlopacioni HexSimR an R package for post HexSim simulation analysis carlopacioni WPdata Whiteman Park trapping data analysis carlopacioni amplicR An R package to process amplicon data carlopacioni mtraceR mtraceR carlopacioni vortexR an R package for post Vortex simulation analysis carlopacioni vortexRdata Supplementary raw data for the R package vortexR carloscinelli NetworkRiskMeasures Implements risk measures for (financial) networks, such as DebtRank, Impact Susceptibility, Impact Diffusion and Impact Fluidity. carloscinelli benford.analysis Tools that make it easier to use Benford’s law for data validation and forensic analytics. carloscinelli sValues Measures of the sturdiness of regression coefficients. carlosfamilia rpython_json_m A customization of the rPython package, which allows to choose what Python interpreter to use. carlosfamilia rpython_json_u carlosproca cdnormbio R package: Condition-Decomposition Normalization for Biological Applications carlosrive94 wpsversionatorpkg carlosvergara fisabioR Repositorio con funciones en R para la creación de un sistema de directorios y archivos unificado en el Área de Desigualdades de FISABIO. carlosvergara fisabior Repositorio con funciones en R para la creación de un sistema de directorios y archivos unificado en el Área de Desigualdades de FISABIO. carltonyfakhry InvenireSRNA An R package which specializes in predicting CsrA regulating sRNAs and also provides the user with the ability to learn a similar classification model for different classes of sRNAs. carltonyfakhry geneticsCRE carolinafishes NCMNS_Fish carolinafishes PhyInformR PhyInformR package carolinecolijn treetop Label and compare topologies of (for now binary) rooted trees carolinedriescher testPackage carrascojalmar MNB Beyond regression: Diagnostic tools for the multivariate model from the random intercept Poisson-GLG model carrollrm fillmap carslawbroccoli GA STAT243 Group Project carter-allen kappaR For calculating kappa statistics carter-allen normR Some useful functions for working with Bayesian normal modeling carter-allen oddsR Some useful functions for calculating odds ratios in R. cartowong oo An R package to provide an object-oriented framework for R programming cascade-wp6 socialecological A model application of the livestock resilience model for social-ecological modelling. casecpb KSEAapp This is the repository for the files pertaining to the KSEAapp R package caseybreen childhoodmortality Tools to calculate childhood mortality rates (neonatal, postneonatal, infant, child, under-five) using DHS data. caseywdunn agalmar caseywdunn exampleci caseywdunn hutan Analysis of phylogenetic tree topology caseywdunn scripts caseyyoungflesh MCMCvis R package to visualize, manipulate, and summarize MCMC output caseyyoungflesh post 'post' package caseyyoungflesh potools 'potools' R package cashoes enumerateblood A multi-response Gaussian model capable of accurately estimating the composition of blood samples from their gene expression profiles. Fit on Affymetrix Gene ST gene expression profiles using the glmnet R package. cashoes ggmixOmics Improved plotting outputs for mixOmics models, using `ggplot2` cashoes sear Simple (effin') Enrichment Analysis in R cassiopagnoncelli genderguess R package for guessing gender given a name (with 99.3% hit rate). catavallejos BASiCS BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version catavallejos RMWreg Accelerated failure times survival regression using Rate Mixtures of Weibull distributions catlain sparklyrfun cattleguard towr Personal R Package cawrence391 FARSlawrence cayek BenchmarkingR cayek BioCompToolsR cayek ExpRiment A R package to run batch experiment. cayek MatrixFactorizationR Matrix factorization algorithm cayek Mokuso Package with my personal R functions. cayek Mokusu Package with my personal R functions. cayek TESS3_encho_sen TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics. cayek associationr cbail textnets R package to perform automated text analysis using network techniques cbailiss basictabler Construct Rich Tables for Output to HTML/Excel cbailiss pivottabler Create Pivot Tables natively in R cbalantic dissertationSandbox One-stop shop for all the functions I've been using in the exploratory phase of my bioacoustic monitoring research. Work in progress. cbarbu R-package-zoom An R package to zoom in and out and more generally navigate a plot or a group of plots in R. cbare mPower-processing-old Data cleaning and feature extraction pipeline for mPower app cbaumbach Readabel Access OmicABEL's binary output files from R cbaumbach betapois Mixed Beta-Poisson Distribution --- Using TDD With Probabilistic Code cbaumbach betapoisson Beta-Poisson Mixture Distribution cbaumbach foydle Fast P-Values For Linear Regression Interaction Term cbaumbach genFun Utility functions for dealing with genetic data in R cbaumbach manyregs Flexible and concise regression analysis cbaumbach metaboliteqc cbaumbach miscFun Miscellaneous utility functions for R cbaumbach treeFun R functions for creating, manipulating, and plotting trees cbdavis DBpediaSpotlightR Sends text to the DBpedia Spotlight API and returns results as a data frame cbdavis EnipediaDataQualityBot cbdavis RSemanticMediaWikiBot Bot for editing Semantic MediaWiki templates, written in R cbdavis enipedia-openrefine-reconcile R code used to set up a reconciliation service for the data on enipedia.tudelft.nl cbdavis findRspeakers Find people nearby who can give presentations about their interesting work with R cbg-ethz MC-CBN MC-CBN performs large-scale inference on conjunctive Bayesian networks cbg-ethz OT-CBN OT-CBN is an R package for estimating a timed conjunctive Bayesian network from paired genotype-sampling time data cbg-ethz TMixClust cbg-ethz TiMEx Bioconductor package for finding mutually exclusive groups of alterations in large cancer datasets cbg-ethz epiNEM R package epiNEM --- latest version available from Bioconductor.org: https://bioconductor.org/packages/epiNEM/ cbg-ethz gespeR Gene-Specific Phenotype EstimatoR cbg-ethz knockdown Analysis of high-throughput gene perturbation screens in R. cbg-ethz knockout Analysis of high-throughput gene perturbation screens in R. cbg-ethz netprioR cbg-ethz pathTiMEx pathTiMEx is a model for the joint inference of mutually exclusive pathways and the dependencies among them in carcinogenesis cbg-ethz pcNEM cbg-ethz rDGIdb cbhelmholtz metaboliteqc cbielow PTXQC A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant cbig zonator Utility tools for for anybody interested in using a familiar tool (R) in setting up Zonation runs and managing Zonation results. cbl-imagine MCXpress cboettig AdaptiveDynamics Individual based simulations of adaptive dynamics cboettig RAMfisheries Access Data from the RAM Legacy Stock Assessment Database cboettig cboettigR A collection of useful functions and utilities I commonly use cboettig dataone-lite cboettig earlywarning Methods for detecting early warning signals of critical transitions cboettig eml2 A list-based rewrite of higher-level functions from EML cboettig emld JSON-LD representation of EML cboettig emljson JSON-LD representation of EML cboettig fluctuationDomains Code for "Fluctuation Domains in Adaptive Evolution", published in TPB cboettig knitcitations Generate citations for knitr markdown and html files cboettig lifxr R interface to LIFX lightbulb API cboettig mcmcTools tools for Markov Chain Monte Carlo in R cboettig mdplearning Bayesian Learning Algorithms for Markov Decision Processes cboettig movebank A lightweight interface to the movebank API cboettig multiple_uncertainty cboettig nexld draft nexml to json-ld conversion. Perhaps better done in XSLT? cboettig nonparametric-bayes Non-parametric Bayesian Inference for Conservation Decisions cboettig pdg_control Pretty Darn Good Control: applications in optimal control cboettig pmc Phylogenetic Monte Carlo: Quantifying Uncertainty in Phylogenetic Methods (now on CRAN) cboettig pmc-archived archived version of pmc package. See current version at http://github.com/cboettig/pmc cboettig pmc2 A lightweight replacement for pmc. Should eventually be migrated to replace 'pmc' cboettig populationdynamics Tools to simulate various population dynamics models in ecology cboettig rappl R wrapper around APPL library, which implements the classic SARSOP algorithm to solve POMDPs cboettig rdflib High level wrapper around the redland package for common rdf applications cboettig regimeshifts R package providing simulations and data from ecological regime shifts cboettig socialR functions for making R interact with social media cboettig structured-populations Stochastic Population Dynamics in Ecology with Age and Stage Structure cboettig template A template for my research projects, based on the R package structure cboettig treeBASE An R interface to the treeBASE API (now on CRAN) cboettig warningsignals cboettig wrightscape Infer adaptive landscapes from phylogenetic trees cbreto panelPomp R package for statistical inference using panel POMPs (Partially Observed Markov Processes) cbrown5 BenthicLatent cbtolson classSNitch classSNitch: Autonomous classifier for RNA structure change in genome-wide experimental data (R-randomforests-dtw) cbw1243 marginal To fit the marginals and visualize the fittings cbw1243 marginalfit marginalfit cbw1243 test test codes cc458 postregplots ccagc QDNAseq QDNAseq package for Bioconductor ccagrawal nbaTools Scraper for NBA data ccagrawal sportsTools R package for working with sports data cchanialidis combayes Bayesian COM-Poisson regression for count data cchng MetaAnalysis cchoirat Linreg cchoirat gridded R tools to process reanalysis gridded data cchoirat rinmap An R interface to inMAP ccjolley cRimson Tools for social media analysis (together with Crimson Hexagon) ccolonescu Black9edata Data for Business Statistics by Ken Black 9e. ccolonescu PoEdata R data sets for "Principles of Econometrics" by Hill, Griffiths, and Lim, 4e, Wiley ccshao maIHB ccwoolfolk supplystack cdalzell Lahman R Package Containing Sean Lahman's Baseball Database cdcrabtree auditr Examine spatial heterogeneity in the probability that a surname denotes a race cdcrabtree colorr Color palettes for EPL, MLB, NBA, NHL, and NFL teams. cdcrabtree helprr Convenience functions for data preparation and summarization cdcrabtree nomine Classify names by gender, U.S. ethnicity, or leaf nationality cdcrabtree plotrr Functions for making visual exploratory data analysis with nested data easier. cdcrabtree revisions An R package that contains macroeconomic revisions data. cdcrabtree varo Classify names by gender cddesja D3plot Interactive plots in R using D3.js cddesja R4Atlantis R helper package for creating, manipulating, and visualizing Atlantis input files and data cddesja R4Atlantis-legacy R helper package for creating, manipulating, and visualizing Atlantis input files and data cddesja REPM Using R for Educational and Psychological Measurement companion package cddesja chriscellaneous Miscellaneous R functions cddesja hemp Datasets and helper functions for the Handbook of Educational Measurement and Psychometrics using R. cddesja profileR Profile Analysis and Its Applications cddesja validateR Psychometric validity and reliability statistics in R cdepeuter golf_analytics cdeterman CATkit Chronomics Analysis Toolkit (CAT): Analyze Periodicity cdeterman HGTools HG tools to use cdeterman HGmiscTools No description or website provided. cdeterman OmicsMarkeR automated 'omics' classification and feature selection cdeterman RViennaCL R package providing ViennaCL header files cdeterman bigmemory2 My enhanced version of the CRAN bigmemory package, likely to be removed cdeterman bigmemoryExt Adding extensions to the R bigmemory package. cdeterman demoS3imports Small package demonstrating how to import S3 methods when not exported properly. cdeterman gpuR R interface to use GPU's cdeterman gpuRbenchmark Small package to benchmark gpuR functions cdeterman lazytensor A lazy evaluated, symbolic tensor package for R cdeterman neatR cdeterman prometheus Deep Learning Library for R cdeterman rcpp11test test for c++11 features with Rcpp cdeterman vclTest test RViennaCL cdgreenidge brcbase BrainConductor base cdgreenidge brcvis Brainconductor visualization cdiener dycone Analyze enzyme regulation with metabolome data. cdiener tcgar R package to read TCGA data and connect it to analysis pipelines (e.g. bioconductor). cdriveraus ctsem Continuous (and discrete) time dynamic modeling in R, using both SEM and Bayesian approaches. cdv04 ACTR cdv04 FarsPack cdv04 MyPckg Project Building R package (Coursera, JHU) cecilesauder SET the famous game cedarfoundation hisco Classification of HISCO codes to HISCLASS, SOCPO and HISCAM social class systems cedricbatailler ExperimentalDesigner cedricbatailler LIPmisc cedricbatailler apastylr cedricbatailler maskr celalp ribofootprintR celalp uploader cells2numbers migrationminer Neutrominer is a R package to analyse and profile in vitro cell tracking and migration data. It is belongs to the cytominer-verse used for morphological profiling and allows to create temporal or dynamic profiles. cells2numbers neutrominer cemigo114 GoogleAPI Google Trends using R ceparman CoreAPI CoreAPI - R package to interact with the Core Informatics API ceparman CoreAPIV2 ceparman HCPtools R package for HCP ceparman etradeR ceparman tseries certifiedwaif topserveR Utility to find out which servers in the School of Mathematics and Statistics at the University of Sydney are being least used. certifiedwaif topserver Utility to find out which servers in the School of Mathematics and Statistics at the University of Sydney are being least used. ceweiss GeomComb (Geometric) Forecast Combination in R cezden ExpFamilyLab R package for abstracting and exploring the Exponential Family of distributions cezden lineaRutils R utilities for linear models cezden parSEER R parser for NCI Surveillance, Epidemiology, and End Results (SEER) text data cezden rpostgrexplorer R package for PostgreSQL and Redshift metadata explorations cfbeuchel CarlHelpR CarlHelpR: Convenience Functions and GitHub test for package creation cfree14 datalimited2 More stock assessment methods for data-limited fisheries cgiacofei fbapi R wrapper for the Fitbit API cgmisc-team cgmisc cgplab PAMES Tool to estimate purity of tumor samples exploiting DNA Methylation data cgplab PAMESdata Precomputed informative CpG sites and CpG islands to be used with PAMES package cgr-promising-solutions cgr A R Package with Utilities for Common CGR Tasks cgr-promising-solutions lintrAddin Integrate the lintr package with RStudio cgvwzq rlang-loophole R library for loophole's page fingerprinting experiments ch4413 IHSTechTools R Tools for working IHS Technology data chadhazlett KBAL Kernel Balancing project chadhazlett sensemakr Sensitivity Analysis chadsmith123 scsa Sperm Chromatin Structure Analysis program for R chafizog SPLMM chagasVinicius RTNduals RTNduals: An R/Bioconductor package for analysis of co-regulatory network motifs and inference of 'dual regulons'. chagasVinicius RTNduals-alpha RTNduals: An R/Bioconductor package for analysis of co-regulatory network motifs and inference of 'dual regulons'. chagasVinicius RTNmotifs RTNmotifs: An R/Bioconductor package for co-regulation analysis and inference of 'dual regulons' chainsawriot chainsawriot chainsawriot hkgovrr R Wrappers to Hong Kong Government APIs chainsawriot hongkong hongkong: An R package for analyzing Hong Kong data chainsawriot mstranslator An R wrapper for the Microsoft Translator API. Implemented using R5. chainsawriot ngramrr A replacement of RWeka's NGramTokenizer (no rJava dependency!) chainsawriot pediarr R interface to Wikipedia API chainsawriot pwr2 R package for power analysis: reboot project chainsawriot readODS read ODS files into R as data.frames chainsawriot sinodate S4 class to represent date in Chinese calendar chainsawriot ssdd chainsawriot weiborr Simple Sina Weibo API client chainsawriot wordcloudrr R to HTML5 wordcloud chakri9 GenRank Candidate gene prioritization based on convergent evidence chameleonmedia a1test chandlerzuo Project11Lang chandlerzuo atSNP Large-scale testing for SNP-motif interactions. chandlerzuo cssp ChIP-Seq Statistical Power chandlerzuo mbasic Matrix Based Analysis for State-space Inference and Clustering chandrasaksham STV Single Transferable Vote Counting implementation chandrasaksham pkgMaking Learning making r-packages with GitHub changebo Vine Vine Model R Package changebo copreg Copula Regression R Package changshun termstrc chaodengusc preseqR No description or website provided. chaozhi HelloWorld Hello, world! chapmandu2 CancerCellLineModelling chapmandu2 CancerCellLines A framework for analysing public domain cancer cell line data and integrating it with proprietary compound screening data chapmandu2 CollateralVulnerability2016 Package containing code to run the CRUK Manchester Institute Drug Discovery Unit Collateral Vulnerability workflow. See the wiki for more info. chapmandu2 IncucyteDRC Package to analyse live cell imaging data from the Essen Incucyte Zoom chapmandu2 biotidyr tidy methods for multiassay bioconductor objects chapmandu2 pgxsim Simulation of pharmacogenomics dose response curves chapmandu2 tidyMultiAssay tidy methods for multiassay bioconductor objects chappers CS6300-vagrant chappers Ramble A R parser based on combinatory parsers. chappers binst Bin Stuff - a binning library for R chappers dplyrNetezza Netezza interface for dplyr chappers randomProjection An implementation of random projection in R based on Python's sklearn chappers sparklyrExamples A fork of sparkhello - for Chapman's personal use chariff Cytometree A binary tree algorithm for automatic gating in cytometry analysis chariff cytometree A binary tree algorithm for automatic gating in cytometry analysis charlatteD numint charleneguillaumot SDMPlay charles-bernard mage Mine Associated Gene Expressions (from Single Cell Rna Sequencing Datasets). charles-plessy CAGEr Mirror of Bioconductor's CAGEr package repository charles-plessy clonotypeR.old Quantitative analysis of antigen receptor sequences charles-plessy molaR Calculate molarity using exported BioAnalyzer data charles-plessy oscR Library to work on OSCTables (Order Switchable Column Tables) with R. charles-plessy smallCAGEqc Helper package for internal use -- have a look if you want charles-plessy zenbuWrappeR R functions wrapping Zenbu command-line tools. charlie86 spotifyr charliebone shopifyr An R Interface to the Shopify API charliex210 sctools Tools for single-cell RNA-seq data analysis charlotte-ngs GELASM Website for lectures Genetic Evaluation of Lifestock (GEL) and Applied Statistical Methods in Animal Science (ASM) charlotte-ngs RArgusDBAPI charlotte-ngs RStudioAsCppEditor Using RStudio as IDE for developing C++ charlotte-ngs ReadBinFileByChunk Explanation about how to read a binary file by chunks charlotte-ngs ZLHS2016 Material for course in Livestock Breeding and Genomics HS2016 charlotte-ngs Zuechtungslehre Vorlesung in Zuechtungslehre an der ETH Zuerich charlotte-ngs rcoursetools Management tools for courses in R charlotte-ngs rgrm R Helper functions around the genetic relationship matrix charlotte-ngs rmddochelper R markdown document helper package charlottecaucheteux homework2 charlottedion mixedsde Work in progress charlottehchang zapstRR ZoologicAl Package for Randomized Response Technique Analysis charlottesirot elementR chartgerink 2016img-manip chartgerink osfr An R package to interface with the Open Science Framework (WORK IN PROGRESS) chartgerink statcheckTEMP Temporary statcheck adjustment for easy cross-pc install chasemc IDBacApp testing continuous integration chasemc IDBac_App chasemc Jan2018ShinyMeetupCRUG January 2018 CRUG Presentation chasset collect-mobitweet chasset grnn General Regression Neural Network chasset pnn Probabilistic Neural Network chatchavan Moov Functions for reading data out of Moov sensors chavent ClustGeo chavent ClustGeo2 chavent ClustOfVar chavent PCAmixdata chavent divclust chavent sparsePCA chbernau CMA Synthesis of microarray-based classification checco74 EAtestslite chedonat DigitalPicoTools chedonat OncoPhase OncoPhase: Quantification of somatic mutation cellular prevalence using phase information chenchunyu88 BATools Tools for Bayesian analysis for whole genome prediction and genome wide association chendi1020 fars coursera build R Package final project chendi1020 msudatapull chenfr williamsfacultyage Hutchin Hill R-Project: What is the average age of Williams College Faculty? chengfeifan Causality Calculate the causality between variables chengfeifan myCCM chengfeifan reservoir-computing chengjun90 tidydata chengjunhou pmut Predictive Modeling Utility-function Toolkit chengvt EEM R package chengvt cheng chenhaotian High-Frequency-Trading-Simulation-System HFT, A high-frequency trading simulation package in R chenhong-dkfz wombat chenkel goevbR No description or website provided. chenpanliao cccR Color contrast calculator with R chenshengkuang MetaPersonalized General Framework of Meta-analysis/Multiple Outcomes for Personalized Medicine chenshengkuang mpersonalized General Framework of Meta-analysis/Multiple Outcomes for Personalized Medicine chenshi5826 Linreg chenshi5826 linreg11 chenwendi CausalImpactLite chenx26 EstimatorStandardError This is a package for computing the standard error of risk/performance estimators chenx26 TestPkg chepec R-common A collection of R scripts that solve common tasks and that are included in many of my other R scripts. chepec ec-zahner R package with functions for reading Zahner CV and EIS data into dataframes. chepec kptech R package for reading Kelvin probe measurements from KPTech software version 5.02 - 8.1 chepec oceanoptics R package for reading UV/Vis spectra recorded using OceanOptics software. chepec photoec Sunlight spectra for photoelectrochemistry chepec renishaw R package for reading Raman spectra from Renishaw Wire v3. chepec water Calculates oxygen solubility in water at any temperature between 0°C - 50°C based on published empirical model (Hitchman, Measurement of Dissolved Oxygen, 1978), and tabulated vapour pressures of water. cherkaos MetabToPathways cherrybonch barber cherrybonch cactus cherrybonch rrr cherryyan MASSR Sample size re-estimation for confirmatory two-stage flexible multi-arm trials chessstats fidecountries Convert Fide country codes to country names chessstats players R package for downloading and processing the Fide players list in XML format chessstats playerstats Statistics of Fide players chessstats procplayers Process Fide players data chessstats specstats Special statistics of Fide players chestnut55 NMiSPU cheuerde cpgen Parallel Genomic evaluations in R cheungamanda powers chezou sparkavro Load Avro data into Spark with sparklyr chezyn Greeting Example of how to develop a R package and use Git submodule chezyn test R package test chfleming ctmm Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data. chgigot canis canis: Canopy File Investigator and Shreder chgigot cgmisc CGigot Miscellaneous chgrl bReeze An R package collecting functions for wind resource assessment chgrl diezeit An R wrapper for the ZEIT ONLINE Content API chgrl leafletR An R package to create interactive web-maps based on the Leaflet JavaScript library chgrl mapillRy An R interface to Mapillary.com - a service for crowdsourcing street level photos chgrl rdnb R interface to the Deutsche Nationalbibliohek (German National Library) API chgrl rwikidata R interface to wikidata.org chiefBiiko basicGithubAuth basic Github authentication chiefBiiko bitjson de/serialization utility based on bit JSON arrays chiefBiiko bounds common sense closures in R chiefBiiko boxjson utility to transform JSON from unboxed to boxed state and vice versa chiefBiiko getMyIp private and public ipv4 chiefBiiko jsonmatch simple JSON matching chiefBiiko octostep iterate like an :octopus: chiefBiiko paste2JSON chiefBiiko runr running functions chiefbiiko basicGithubAuth basic Github authentication chiefbiiko runr running functions chiefmurph MAUC Modeling ALAE Using Copulas chiefmurph ep Earn Premium chiefmurph mondate chihlinwei OceanData Tools to download and extract oceanographic data chihlinwei PM2.5 Read pm2.5 log files chihlinwei SCC chihlinwei ddecay Fit an exponential distance decay model to assemblage similarities chihlinwei faodosimeeting chihlinwei fbTrait Scraping trait data from fishbase web site childsish hilbert-in-treemap Plot a hilbert curve in a treemap chinchillarama FARS Fatality Accident Reporting System (FARS) R package chindhanai GSoC2017 All relevant document for GSoC2017: advancing factorAnalytics chindhanai cusumActiveManager All relevant document for GSoC2017: advancing factorAnalytics chindhanai factorAnalytics GSoc2017 Project: Advancing factorAnalytics chindhanai skewtInfo Information Matrix Computations chiningchang markdownapp chiningchang share chinmaymandal Assignment3.2.1 chinsoon12 KnapsackSampling Generate samples from the feasible region of a knapsack problem chinsoon12 PreKnitPostHTMLRender Dynamize headers or R code within Rmd documents to prevent proliferation of Rmd docs for similar tasks. Add in external HTML document within rmarkdown rendered HTML doc. chinsoon12 RStudioShortKeys An addin package to complement RStudio by providing shortcut keys to commonly used functions (e.g. str, head, and tail) chipoglesby RGA A Google Analytics API client for R chiragjp xwas chirayukong helloJavaWorld chirayukong tetradR R wrapper for Tetrad library chivalrousGiants noiseApp chivalrousGiants rapporDecode R package for Google's Rappor Decode functions chiyahn mixPanel R package for mixture dynamic panel models chiyahn rMSWITCH R package for Markov regime-switching models (under development) chiyahn rMSWITCHQuZhuo rMSWITCH with Qu and Zhuo (2017) implementation chizhangucb tmleCommunity TMLE for community level data chjackson MetaAnalyser Web application to visualise meta-analysis as physical weights on scales. https://chjackson.shinyapps.io/MetaAnalyser chjackson MetaAnalyzer Web application to visualise meta-analysis as physical weights on scales. https://chjackson.shinyapps.io/MetaAnalyser chjackson fic R package for the focused information criterion for model selection chjackson flexsurv-dev The flexsurv R package for flexible parametric survival and multi-state modelling chjackson msm The msm R package for continuous-time multi-state modelling of panel data chjuruena simplex150 chkbs testingR chkiefer stochasticEffects chloeqiao homeworkpackage homework of package chmad TestCov choisy base2 Extension to the base R package choisy censusVN2009 Polygons of communes, districts and provinces of Vietnam from 2008 together with populations sizes from 2009 census choisy compopsizeVN Vietnamese communes populations sizes and polygons choisy cutoff R package: determining cutoff values from bimodal data choisy epiVN Vaccine coverages from the WHO EPI in Vietnam choisy gadmSEA Maps of southeast Asia countries choisy gadmVN The maps of Vietnam from the GADM data base choisy gamar choisy gamar1 choisy gamar2 R interface to the GAMA simulation platform choisy gamar3 choisy gdpm Data from the General Department of Preventive Medicine (GDPM) of Vietnam choisy globcoverVN Land use data for Vietnam from GlobCover ESA's project choisy gso Data from the General Statistical Office (GSO) of Vietnam choisy imhen Monthly meteorological data from the Vietnamese IMHEN choisy mapsVN Data base of vector and raster maps of Vietnam choisy marc Miscellaneous accessory R codes choisy mcdev Functions to publish blogs and websites choisy mcstats Miscellaneous functions of various statistical analyses choisy mcutils Complement the utils R package choisy midp R package: modeling infectious diseases parameters based on serological and social contact data choisy poseid Population-based observational studies of the epidemiology of infectious diseases choisy sp2 Additional functions to manipulate Spatial* objects as defined in the sp package choisy sptools A collection of functions to extend the sp and rgeos packages choisy srtmVN Elevations Data for Vietnam from SRTM90 choisy vietnam63 Polygons of the communes, districts and provinces of Vietnam as of after 2008 choisy worldpopVN Population densities of Vietnam from WorldPop chok68 havenondemand-r HPE Haven OnDemand R Client Library chongyan11 gmapsdistance chr1swallace GUESSFM R package for fine mapping genetic associations in imputed GWAS data. chr1swallace TibsPower Power calculations for microarray expts using the Tibshirani (2006) method chr1swallace annotSnpStats repo for R package annotSnpStats chr1swallace cFDR faster cFDR using Rcpp, but not adaptation for common controls chr1swallace caller cluster beta/gaussian mixture data chr1swallace coloc Repo for the R package coloc chr1swallace genomic.autocorr Use block bootstrap to allow for spatial dependencies in genomic data used in glms chr1swallace origin Repo for the R package origin chr1swallace random-functions R functions for which I want some version control chr1swallace snpBMA R functions to extend the CRAN BMA library to deal with dense genotyping data. NOT YET WORKING!!!! chr1swallace snpHaps chr1swallace snpStatsWriter Repo for the R package snpStatsWriter chr1swallace wgsea Repo for the R package wgsea chrglez istacr chris-prener compStatR R package for working with St. Louis Metropolitan Police Department crime data chris-prener gateway R package for working with spatial data from St. Louis chris-prener postmastr R package for Processing and Parsing Untidy Street Addresses chris-prener prener Chris Prener's R Functions chris-prener stlData R package containg St. Louis related datasets for teaching chris-prener stldata R package containg St. Louis related datasets for teaching chris-prener testDriveR R package with data for teaching Statistics and Data Science chris-s-friedman Friedman My personal R functions chris-s-friedman Project_firestartr my personal functions and utilities for R chris-s-friedman project_mpcp chrisaddy clinicaltrials chrisaddy contributions A data set of political contributions from the US Federal Elections Commission chrisaddy multiverse chrisaddy rrr R package for Reduced Rank Regression chrisamiller copyCat a parallel R package for detecting copy-number alterations from short sequencing reads chrisamiller fishplot Create timecourse "fish plots" that show changes in the clonal architecture of tumors chrisamiller readDepth R package for inferring copy number from read depth chrisbrunsdon GISTools chrisbrunsdon caricRture chrisbrunsdon gwxtab Geographically Weighted Cross-Tabulation chrisbrunsdon postcoder chrisbrunsdon postcodes chrischen1 viper_copy chrishaid deanslistr R API to DeansList api chrishaid demo chrishaid hsrr Visualizations for KIPP Foundations HSR Survey Data chrishaid illuminater A Package for getting, aggregating, and visualizing assessment data housed in Illuminate. chrishaid mapspringr Impute or estimate prior spring RIT scores using current fall RIT scores chrishaid silounloadr functions for convey and prep data from KIPP Chicago's Silo data warehouse to an R session chrishaid sqrpr Calcuate CPS's School Quality Ratings Policy metrics in R. chrishanretty pano R package for converting between codes for UK parliamentary constituencies chrishaug dkss chriskirkhub etea etea (Environment/Thoughts/Emotions/Actions) is an 'R' package that contains functions to classify text into predetermined baskets as a conduit to matrix that can be used as an input into predictive or other analytical modules. This work extends a methodology and code that is attributed to Dr Tim Jurka (timjurka/sentiment). chrisknoll CohortManager An R tool that lets you manage cohort definitions sourced from CSVs chrismerkord eastweb Get data from an EASTWeb database into R chrismerkord epical Work with WHO or CDC epidemiological weeks. chrismerkord epidemia-package chrismheiser lipdR LiPD Utilities for R chrisschuerz CROPres chrisschuerz SWAT2012mgt write SWAT management data to SWAT2012 mgt files chrisschuerz SWATLUsamp random land use sampling for SWAT chrisschuerz SWATsolaR SWAT - Soilgrids data aggregation in R chrisschuerz aRastoCAT A raster climate data aggregation tool chrisschuerz pasta Intuitive and readable infix functions to paste strings together chrisschwer segue Automatically exported from code.google.com/p/segue chrisschwer voterTransition-package R package for voterTransition christbald EasyABCPar christbald magpie_api_r api for magpie using r christbald mch multicoreclusterhybrid christiaanpauw AQoffset R package to calculate air quality offsets christiaanpauw BoD christianolms ContextVariableCreation christianparobek skeleSim Null models, performance testing, and power estimation with population simulations christiantillich AnaliTools Test christiantillich syberiaReports A quick and dirty package for creating reports out of Syberia objects. Designed to mimic Syberia's "model-as-a-list" idea by creating a similar list for the report. christiantillich test christianu7 BNPMIXcluster Bayesian non-parametric approach for clustering with mixed scale variables christinaheinze CompareCausalNetworks A unified interface for the estimation of causal networks christinaheinze backShift Code for 'backShift', an algorithm to estimate the connectivity matrix of a directed (possibly cyclic) graph with hidden variables. christinehohensinn DataprepMisc loose collection of functions for making special data preparation tasks convenient christinehohensinn parAL he package implements the approach proposed in Baghaei and Hohensinn (submitted). The approach aims to have a benchmark of the goodness-of-fit of the user-defined weight matrix of the linear logistic test model (LLTM). christinehohensinn pcIRT pcIRT is an R package for estimating IRT models for polytomous and continuous item responses. By now, it contains functions to estimate the multidimensional polytomous Rasch model (Rasch, 1961) and the Continuous Rating Scale Model (Müller, 1987) christophM interpretable-ml-book Book about interpretable machine learning christopherLang pcc R Function to automatically create a standardized data analysis project template christophergandrud DataCombine R tools for combining data sets. christophergandrud ExpAgenda A bayesian hierarchical topic model for texts in R. The package implements Grimmer (2010). christophergandrud NewPackage A practice package for DataFest 2017 christophergandrud StanCat Creates caterpillar plots from stanfit objects christophergandrud StanSpeeches Functions for Running Models/Showing Output from Stan for the Fed Speeches Project christophergandrud SurvSetup Finds Spell Features that are Useful for Estimating Survival Models christophergandrud coreSim Core Functionality for Simulating Quantities of Interest from Generalised Linear Models christophergandrud d3Network Tools for creating D3 JavaScript network graphs from R. christophergandrud dpmr Data Package Manager for R christophergandrud dynsim An R implementation of dynamic simulations of autoregressive relationships christophergandrud ecmSim Simulate and display quantities of interest from Error Correction Models christophergandrud fredr Download a variable from FRED (https://research.stlouisfed.org/fred2/) for multiple countries christophergandrud imfr R package for interacting with the IMF RESTful JSON API christophergandrud networkD3 D3 JavaScript Network Graphs from R christophergandrud oecdr Download and format data from the OECD christophergandrud plotMElm An R package to plot marginal effects for interactions estimated from linear models christophergandrud pltesim Simulate probabilistic long-term effects in models with temporal dependence christophergandrud repmis Miscellaneous tools for reproducible research with R. christophergandrud setupPkg A one function package that checks loads R packages, installing them first if they are missing christophergandrud simGLM Simulate and Plot Quantities of Interest from Generalised Linear Models christophergandrud simPH Tools for simulating and graphing results from proportional hazards survival models. christophergandrud simpleSetup Simple Functions for Setting Up An R Source Code File For Use on Multiple Machines christophergandrud simtvc Tools for simulating and graphing time-varying coefficients. christophergandrud spatialWeights Calculate spatial weights for time-series cross-sectional data and report spatial clustering test statistics christophergandrud zibHelpers Helper functions for handling results from Bayesian Zero-inflated Beta Regressions in R christopherggreen CerioliOutlierDetection R package to detect multivariate outliers using robust Mahalanobis distances and the methodology of Cerioli (2010). christopherggreen HardinRockeExtension R package to replicate the results of Green and Martin (2014, 2015). christopherggreen HardinRockeExtensionSimulations R package to replicate the results of Green and Martin (2014, 2015). christopherggreen cggRfacmod christopherggreen cggmisc Christopher G Green's Miscellaneous Functions christopherggreen cryptanalysis R Tools for Cryptanalysis christophsax dataseries R tools for dataseries.org christophsax seasonal R interface to X-13ARIMA-SEATS christophsax seasonallab experimental stuff that may or may not make it into the seasonal package at some point christophsax seasonalview Graphical User Interface for Seasonal Adjustment christophsax shinyMILC A Graphical User Interface to MILC christophsax tdmc Reproducible Monte-Carlo Evaluation of Regression-Based Temporal Disaggregation Methods christophsax tempdisagg Methods for Temporal Disaggregation and Interpolation of Time Series christophsax timemachine Travel Through Time christophsax tsbox R functions that are agnostic towards time series classes christophsax x13story Interactive Stories on Seasonal Adjustment with X-13ARIMA-SEATS christpa DMRScan R package for detection of differentially methylated regions with adjustment for multiple testing christpa MoBaEpigeneticPipeline Pipeline for MoBa epigenetic analysis @NIPH chrisvwn Rnightlights R package to extract data from satellite nightlights. chriswu1996 williamsfinance Shows Statistics and Predicts the College Bills of Williams College chriswu1996 williamsgraduates Shows statistics about the gender distribution of graduated classes of Williams College chriszheng2016 ZStockModels chriszheng2016 zstmodelr chrlaney rUnispecDC Version of rHyperSpec that is Unispec DC specific chrpihl fars Coursera "Fatality Analysis Reporting System" analyzer chrras climateeng ClimateEng - Tools to Calculate Climatic Comfort Related Parameters chschan copyDimRed chschan testCI chuangaocornell gtx2 chuanwen seqMC chumbleycode rnabook chushugu QuasiDE A new quasi-likelihood method to analyze RNA-Seq data chuvanan dukecolor Duke University Color Palette in R chuwu1995 prfachuw Programming R for analytic chuyingma LLinreg chuyuehuang vizlake Original Data Visualization Package for Lake Research chvlyl MSSQ Multi-Sample Poisson Model for Species Abundance Quantification chvlyl ZIBR Zero-Inflated Beta Random Effect model chvlyl ZIBRE Zero-Inflated Beta Random Effect model chvlyl ZIR Zero-Inflated (Wilcoxon and Kruskal–Wallis) Rank Test chvlyl metakit chvrngit wmpvaer R Package, Multivariate p-Value Estimation: MANOVA,Block Independence & Bartlett's M ECM Test,Plus 1-Way MANOVA Study Design chxy MergeGUI A GUI for merging datasets in R chxy MissingDataGUI A GUI for Missing Data Exploration chxy cartogram Create cartograms in R ciaran8065 PackageInstallation Testing R package installation cihanerkut unicoRn Import, analyze and visualize chromatography data from UNICORN software cihga39871 iteremoval cillianmiltown R_desnum R package containing useful functions cimbusch tissueTreg Data package for ExperimentHub cimentadaj cimentadaj This package contains personal functions I find useful. cimentadaj ess Download data from the European Social Survey cimentadaj inequalityintsvy Economic inequality indicators for all available PISA waves (2000 to 2015 every three years) cimentadaj perccalc cinnober EVT Extreme Value Theory using Bayesian Inference cinthyaleonor rsvmsocp test de modelo citation891 MCAC Functions for the MCAC Shiney App Project cities-lab NHTS2009 NHTS 2009 data cities-lab SLD Smart Location Database by US EPA cities-lab VETravelDemand The multimodal travel demand module for VisionEval cities-lab VETravelDemandMM The multimodal travel demand module for VisionEval citiususc fracdet An R package for the simultaneous estimation of deterministic and fractal components in non-stationary time series citiususc voila Variational Inference for Langevin Equations civilstat RankingProject The Ranking Project: Visualizations for Comparing Populations civisanalytics civis-r Civis API Client for R: https://civisanalytics.com/products/civis-platform/ cjcarlson geeRados Expanded functionality for confidence intervals and graphics for GEE models in R cjeiler somatic Automatic Self-Organizing Maps in R cjendres1 nhanes nhanesA: R package for browsing and retrieving NHANES data cjgb MicroDatosEs R package providing utilities for reading and processing microdata from Spanish official statistics cjgb caRtociudad R package to query cartociudad API cjgb pxR cjgb rPython-win rPython for Windows cjgeyer mcmc R package mcmc (public version on CRAN) cjschulz lab_sim_examples2 cjschulz micromixR Tools for microbiome analysis cjtexas colourgen colourgen package cjvanlissa metaforest Exploring Heterogeneity in Meta-Analysis using Random Forests cjyetman memberstates ck37 ck37r R functions for project setup, machine learning, SuperLearner, parallelization, and targeted learning. ck37 ckTools R functions for project setup, data cleaning, parallelization, and targeted learning. ck37 htestimate Horvitz-Thompson estimator for RCTs, with Joel Middleton ck37 transport Transporting intervention effects from one population to another with targeted learning ck37 varImpact Variable importance through targeted causal inference, with Alan Hubbard ck37 varimpact Variable importance through targeted causal inference, with Alan Hubbard ckenaley fishr ckluss cldtest ckluss gishelpr ckogan pstudy R Prediction Study Design ckoopmann EQVisualisation Earthquake Visualisation Package ckoopmann fars fars package as part of the Coursera Course "Building R Packages" ckraner quick.lavaan View HTML Tables of Lavaan Output ckraner quick.tasks Beautiful tables and a lot of helper functions. ckraner stats.explor.r Awesome Interface ckscheuch CryptoX Simple R wrapper to extract orderbook information from the public APIs of cryptocurrency exchanges. ckscheuch rLykkeX R Wrapper for the LykkeX Trading API ckscheuch rTRACE clabuzze dataManagement Data package with example database management vignettes, presentation, and datasets clacor corr2D clagiamba moloc clairblacketer DDLGeneratr DDL Generator for the OMOP CDM DDLs clairervh GLEON clairervh LTERdata clairervh LakeMetabolizer clandau12322 squirrel clarepacini DrugVsDisease DvD clarepacini covEB Empirical Bayes estimation of covariance matrices clarkfitzg RHive Run R code in Hive clarkfitzg RRipser R bindings to Ripser C++ code for the computation of Vietoris–Rips persistence barcodes clarkfitzg autoparallel experimental library operating on R code clarkfitzg codedoctor experimental library operating on R code clarkfitzg pems R package to analyze raw Caltrans sensor data (PeMS) clarkfitzg rddlist Implements some methods of an R list as a Spark RDD (resilient distributed dataset) clarkfitzg sparklite Lightweight R package to use an Apache Spark cluster for parallel computation clarkfitzg traffic R Tools for analyzing vehicle traffic claudia-codeco AlertTools claudiacava SpidermiR claudiacava StarBioTrek claudiacava StarTrek claudiofronterre geomask geomask claus-e-andersen clanCal claus-e-andersen clanEGSnrc R library of functions for reading and manipulating output from the Monte-Carlo model EGSnrc provided by the Canadian National Research Council. The R functions in this package have been developed for the RZ user codes (dosrznrc and flurzbrc). claus-e-andersen clanLattice R library of functions for Lattice plotting. claus-e-andersen clanMEView An R library of functions for reading data files from the MEView dosimetry system (ME03, ME30, and ME40) claus-e-andersen clanOptim R library of functions that facilitates non-linear regression and uncertainty analysis using the optim-function in the MASS library. claus-e-andersen clanTools R library of functions for general use in data analysis and presentation (e.g. for formatting of numbers) clauswilke colorblindr clauswilke colorspace-ggplot clauswilke dviz.supp Supporting materials for Claus Wilke's data visualization book clauswilke ggjoy Geoms to make joy plots using ggplot2 clayford bme Data and functions for Biostatistical Methods in Epidemiology (Newman, 2001) clayford coursera clayford dvdata Data Files for Design and Analysis of Experiments (Dean & Voss) clayford nandc Size and Critical Region Calculations (n and c) clayford valottery R package containing virginia lottery results claytontstanley shiny.alluvial clbustos SemanticFields R package to analize lexical availability corpora clbustos coolcat-r Clustering algorithm Coolcat(Barbará, Couto, Li) implemented on R clbustos dominanceAnalysis Dominance Analysis (Azen and Bodescu), for multiple regression models: OLS, GLM and HLM clbustos r-glmmextra Support methods for (generalized) mixed models, using lme4 and nlme clbustos rcebn Just some random methods I use on R. Mainly mplus interfaces and some utilities cldatascience stad Text mining resources for Irish (Gaeilge). A data package. cldatascience tidygramr Tidy text mining utility functions. clee29 leepackage clemlaflemme Oxom clemlaflemme RyanEverywhAir Find optimal route for Ryanair flights with unlimited flight-over clemlaflemme mistral Official repo of the R package mistral clemlaflemme test clems NoaaCS Coursera earthquake clesiemo3 postgrestR clewisbe nimbleEco Repository for the NimbleEcology R package as part of GSoC 2017 clewisbe smosfiles Data for SMOS project clgarciga digitalcR clintpgeorge clda Compound Latent Dirichlet Allocation Model clintpgeorge ldamcmc Implements several Markov chain Monte Carlo (MCMC) algorithms for the latent Dirichlet allocation (LDA) model clintpgeorge ldavem Implements the variational EM algorithm for the latent Dirichlet allocation (LDA) model clnsmth taxonCleanr A workflow and set of functions for cleaning your taxonomic data cloud-brain backtest cloudcell PerformanceAnalytics a fork of the official PerformanceAnalytics package cloudcell TTRext extends the set of indicators of the TTR package cloudcell blotter blotter "fork" cloudcell doRedis111stable stable CRAN version (1.1.1) of doRedis with fixed status reporting cloudcell foreach a fork with added debugging analytics cloudcell fuzztest R code stress / fuzz tester: tests all combinations of function input parameters enabling 100% code coverage & simplified unit testing cloudcell packageTemplateRUnit a template for creating an R repository with working integration into Travis and Codecov cloudcell quantstrat adds a bit of code for debugging apply.paramset & some experimental features cloudcell rfintools Various utility functions cloudcello PerformanceAnalytics a fork of the official PerformanceAnalytics package cloudcello blotter blotter "fork" cloudcello fuzztest A simple stress / fuzz tester for functions written in R: tests all possible combinations of arguments for a given function cloudcello packageTemplateRUnit a template for creating an R repository with working integration into Travis and Codecov cloudcello quantstrat adds a bit of code for debugging apply.paramset & some experimental features cloudcello rfintools Various utility functions cloudcello stresstest A simple stress / fuzz tester for functions written in R: tests all possible combinations of arguments for a given function cloudyr MTurkR R Client for the MTurk Requester API cloudyr MTurkRGUI A Graphical User Interface for MTurkR cloudyr Rmonkey A Survey Monkey R Client cloudyr RoogleVision R Package for Image Recognition using Google Cloud Vision cloudyr appveyor Appveyor API Client Package cloudyr aws.alexa Client Package for the Amazon Alexa Web Information Service cloudyr aws.beanstalk cloudyr aws.cloudformation cloudyr aws.cloudtrail AWS CloudTrail Client Package cloudyr aws.cloudwatch AWS CloudWatch Client Package cloudyr aws.code Amazon Code-Commit, -Deploy, -Pipeline API Client cloudyr aws.dynamodb cloudyr aws.ec2 AWS EC2 Client Package cloudyr aws.ec2metadata Access to EC2 Instance Metadata cloudyr aws.efs Amazon Web Services Elastic File System Client cloudyr aws.elb cloudyr aws.emr cloudyr aws.glacier AWS Glacier Client Package cloudyr aws.iam AWS IAM Client Package cloudyr aws.kinesis cloudyr aws.lambda AWS Lambda Client Package cloudyr aws.polly Client for AWS Polly cloudyr aws.rds cloudyr aws.s3 Amazon Simple Storage Service (S3) API Client cloudyr aws.sdb cloudyr aws.ses Amazon Email Service (SES) API Client cloudyr aws.signature Amazon Web Services Request Signatures cloudyr aws.sns Amazon Simple Notification Service (SNS) API Client cloudyr aws.sqs Amazon Simple Queue Service (SQS) API Client cloudyr aws.swf cloudyr awspack Amazon Web Services Bundle Package cloudyr bigQueryR R Interface with Google BigQuery cloudyr circleci Circle CI API Client Package cloudyr cloudcidrs Tools to Obtain and Work with Cloud Provider CIDR Blocks in R cloudyr crowdflower Crowdflower.com API Client cloudyr gcloudR Load all Google Cloud APIs at once cloudyr ghit Lightweight GitHub Package Installer cloudyr googleCloudStorageR Google Cloud Storage API to R cloudyr googleComputeEngineR An R interface to the Google Cloud Compute API, for launching virtual machines cloudyr hbu cloudyr limer A LimeSurvey R Client cloudyr microworkers Microworkers.com R Client cloudyr openstack cloudyr pkgtemplate Style guide-consistent package template for the cloudyr project cloudyr qualtrics An R Client for Qualtrics cloudyr rdatastore R package for accessing google datastore cloudyr rmote Utilities for running R on a remote server cloudyr rscribd Scribd API Client Package for R cloudyr travisci Travis-CI API Client Package clquezada tRophicPosition estimate trophic position using stable isotope data cluoma h5api R wrapper for Halo 5 Public API cluoma haloR R wrapper for Halo 5 and Halo Wars 2 public API cma2015 PEA An integrated R toolkit for Plant Epitranscriptome Analysis cma2015 PEA-m5C A machine learning-based m5C predictor cmann3 econ311 R package for Intermediate Macroeconomics at UNL cmann3 recon cmap cmapR R cmap morpheus.R R interface to morpheus.js heatmap widget cmarmstrong wunderscraper wunderground API scraper cmartin EXIFr EXIFr : Natively read EXIF tags from R cmartin LAI R package to calculate leaf area index (LAI) from vegetation images cmartin PopulationViabilityAnalysis An R package for count-based Population Viability Analysis cmartin ggConvexHull Add a convex hull geom to ggplot2 cmartin msPVA An R package for count-based Population Viability Analysis cmcouto-silva LD cmdcolin shinytemplate A basic template for developing a shiny app as an R package, with some proposed "best practices" cmerow meteR an r package for analyses with the maximum entropy theory of ecology cmhein attractor Periodic and chaotic attractors cmhein fiddler Financial Derivatives Library in R cmhein greeknt The New Testament in the Original Greek cmhein greekntdata The New Testament in the Original Greek (Data) cmhein skeleton R package skeleton cmhein skeletonRcpp R package using Rcpp skeleton cmhh NZCensus cmhh NZCensusDemos cmhh SNZlabmkt cmjt gapski cmjt lgcpSPDE Fitting log-Gaussian Cox processes models cmjt smoke cmlegault ASAPplots Create standard plots for ASAP3 cmlegault PlanBsmooth An R package to apply the smoothing version of Plan B to a time series of biomass index from survey(s) cmmr rbiom Interact with Biological Observation Matrix files. cmoten fars Final project for R software development project cmottet DistributionPty cmottet GLP cmottet MyAutoencoder cmottet RobustTail cmourani IPtoCountryDB11 cmululu paperAnalyser get info from literatures cnaumzik caffeR cndesantana plotshadow Plot curves in R representing the mean values as lines and the standard deviation as shadow polygons cneupart ST516-Rpackage Repository for Rpackage created for exam in ST516 cneyens prms R functions for facilitating the reading and writing of input and output files for the USGS Precipitation Runoff Modeling System. cnielly myPackageTraining cnobles gintools Tools for genomic DNA integration analysis cnobles spraphal R-package for assistance with sparse graphical analysis. cnowzohour greedyBAPs coatless ITS "Introduction to Time Series" (ITS) is a book that is aimed to provide better explanations for students investigating dependency within observations. coatless assignr Tools for Educators Writing Assignments in RMarkdown coatless autograde coatless balamuta Balamuta Miscellaneous R Package coatless cetcolor CET Perceptually Uniform Colour Maps for R coatless dropcli Dropbox CLI for working on a Linux environment within R. coatless errorist Automatic Error and Warning Search coatless fiadb R DB connection coatless formatEQ Same formatting rules afforded by formatR with the exception that `<-` is transformed to `=`. coatless grader Repository for grading R assignments coatless header_cpp_code Example showing header cpp code within the same directory coatless header_cpp_subdir_code Source Subdirectory Example coatless msos msos: Data Sets and Functions Used in Multivariate Statistics: Old School by John Marden coatless pims_bigdata Powering Up the Spatial Computation talk given at University of British Columbia during PIMS' Big Data and Environmental Sciences coatless printf2Rprintf coatless r-to-armadillo Converting base R code to Armadillo code for use with RcppArmadillo or for external programs (e.g. Matlab, Mathematica, ...) coatless rc11 coatless rgen Random generation library for distributions coatless rops coatless searcher Query Search Portals from R coatless sitmo Sitmo parallel random number engine headers in an R package coatless timeseriesisgreat "Time Series is Great!" is a book that is aimed to provide better explanations for students investigating dependency within observations. coatless ucidata R data package containing data sets on UCI's ML repo coatless uiucdata coatless uiucthemes RMarkdown Templates for UIUC Theme-Oriented Documents (e.g. UIUC Beamer) coatless visualize cobriniklab cataRact cobriniklab stchlk.copywriter cobriniklab stchlk.heatmaply code-vagabond NLP-collection R-Package with a collection of NLP functionalities codeForReviewer kMajorityRule Deprecated Version of Files codecov cloverage-to-json codecov example-coverify codecov example-crystal codecov example-dart codecov example-java-gradle codecov example-javascript-react codecov example-r codecov nightly codemeta codemetar an R package for generating and working with codemeta codeminders water-data-analysis codymarquart LSAfun LSAfun codymarquart LSAfun2 codymarquart RAnalytics codyschulz samplePackage2 coffeemuggler EMMAgeo End-member modelling analysis tools for grain-size data coffeemuggler eseis R-package coffeemuggler grainsize cog-ethz evertools An R package to evaluate data gathered with the EVE framework. cogitoergoread fars Helper package to process data from accidents for a US states by year cogitoergoread ltconv LaTeX to Markdown converter package for R cogitoergoread noaa R package to analyse a dataset obtained from the U.S. National Oceanographic and Atmospheric Administration on significant earthquakes. cognopod corners cognopod walter cogtepsum DDP_Assignment repository for Developing Data Products course ShinyApp project cokelaer CellNOptR cokelly collocateR Significance testing for collocates. colbyw5 linreg coldfir3 RED REgularization by Denoising (RED) coldfir3 moko repository for the moko package coldfir3 neatr coldfir3 surf cole-brokamp CB My personal R package cole-brokamp OfflineGeocodeR Geocode addresses from R without exposing PHI to the internet cole-brokamp RFinfer R package for generating prediction and prediction variances from random forests. cole-brokamp aiRpollution R package for assessing elemental PM exposure in Cincinnati cole-brokamp automagic automagically install packages necessary to run R code cole-brokamp geocodeCAGIS An R package to geocode Cincinnati, OH area addresses using offline exact location files cole-brokamp hamilton Offline parcel-based geocoding for addresses in Hamilton County, Ohio, USA cole-brokamp rize dockerize R shiny apps cole-trapnell-lab HSMMSingleCell cole-trapnell-lab monocle-release colearendt testtravis An R package for testing travis colemanja91 rEloqua Functions to making it easy to get data from the Eloqua Bulk API for data analytics within R colemonnahan admbtools Some tools I'm using locally for doing mcmc in ADMB colemonnahan adnuts An R package for NUTS sampling using TMB and ADMB colemonnahan rnuts coleoguy GppFst GppFst: Genomic Posterior Predictive Fst simulations coleoguy MEDEA model package coleoguy SAGA Software for the Analysis of Genetic Architecture - R package coleoguy SAGA2 development version of saga coleoguy chromePlus R package: joint models of chromosome number and binary traits coleoguy chromevolR R package: chromosome number evolution coleoguy evobir R package: Evolutionary biology in R coleoguy popgensim R package: Population genetics simulation for teaching colin-fraser RDBIconnections Manage your dbi connections colin-fraser blog colin-fraser convertR Unit conversions colin-fraser simplesubstitution Simple substitutions to parameterize your SQL colin-olito LoLinR Project for local linear regression for use with metabolic time-series data colindouglas screddr Functions for getting reddit threads and comments for further analysis colinr23 spatialcompare methods for comparing spatial patterns colinr23 stampr r code for stamp colinsheppard colinmisc R Package of miscellaneous functions. collectivemedia binr R package for binning potentially unevenly distributed values in a vector into evenly distributed groups (bins). collectivemedia csvread R package with various utilities, some having to do with loading CSV files and timing. collectivemedia ssh.utils R package with utilities for local and remote command execution (un*x only). collectivemedia tictoc R package with extended timing functions tic/toc, as well as stack and list structures. collinleiber benchmarkVis benchmarkVis - Benchmark Visualizations in R collinleiber myheightchecker R package to compare the height of persons in respect to a general or sex sepecific mean collinmmccabe enss R package for effective network size simulations colonelsmoothie knncs K-nearest neighbors shiny app columbia-glacier cgr R Functions for Columbia Glacier Research columbia-glacier units2 Simple wrapper to the units package comodin19 minuseplogp compbiomed ASSIGN Adaptive Signature Selection and InteGratioN compbiomed enrichR A hacky little interface to call the Enrichr functional enrichment tool from R. compbiomed scruff Single Cell RNA-seq UMI Filtering Facilitator compbiomed scuff Single Cell RNA-seq UMI Filtering Facilitator compbiomed singleCellTK compbiomed tableONE A simple package for making "Table One" study population tables compgenomics MeTDiff compomics search-all-assess-subset An implementation of the Search All, Asses Subset strategy for FDR estimation in shotgun proteomics. compsy ACTman Actigraphy manager computationalstylistics litRiddle The package contains the data of a reader survey about fiction in Dutch, a description of the novels the readers rated, and the results of stylistic measurements of the novels. The package also contains functions to combine, analyze, and visualize these data. computationalstylistics stylo R package for stylometric analyses computbiolgeek predeval Assessment of Performance of Regressors and Classifiers condwanaland condwanaland Personal R functions condwanaland summariser Easy calculatiuon and visualisation of confidence intervals condwanaland workflow Structure your R analysis as a tidy and reproducible project coneill-math m2r Macaulay2 interface for R config-i1 CES Functions for the Complex Exponential Smoothing in R config-i1 inventory Package for inventory simulations config-i1 prognosis The package that contains several functions that can be used in forecasting config-i1 smooth The set of smoothing functions used for time series analysis and in forecasting. conjugateprior Resha Stem Turkish more gently than Snowball conjugateprior austin Do things with words. Scale them, mostly. conjugateprior austin-scratch Austin does things with words. It's the development version of the eponymous package on r-forge. conjugateprior events Events does things with event data. This code may not work, so you should get the CRAN version. conjugateprior fsi FSI's POL 245 precept and problem sets as an R package for students conjugateprior qss-student An R package for students containing problem sets from the QSS book conjugateprior qss.student An R package for students containing problem sets from the QSS book conjugateprior rjca An R package to drive jca conjugateprior twfy An R package that lightly wraps TheyWorkForYou's API connectedblue ProjectTemplate2 connermcb FARSfunctions FARS data formating and plotting connermcb FARSpackage connermcb earthquakes_explorer Package of applications for exploring NOAA significant earthquake data conre3 conreCNPJ Scraper de informações de empresas cadastradas nos Conselhos Regionais de Estatística conre3 pesqEle Scraper de estatísticos registrados nas pesquisas do TSE. const-ae ggsignif Easily add significance brackets to your ggplots const-ae mixdir Cluster high dimensional categorical datasets const-ae tidygenomics Tidy Verbs for Dealing with Genomic Data Frames constantAmateur RLogBook R package to log plots constantin345 NOOA Earthquakes visualisation constantin345 minifars minifars package consultR consultR An R package with tools for consulting 👓 cont-limno LAGOS R interface to the LAke multi-scaled GeOSpatial & temporal database :earth_americas: cont-limno LAGOSNE Interface to the LAke multi-scaled GeOSpatial & temporal database :earth_americas: cont-limno speCluster Spectral Clustering in R contefranz msmtools msmtools introduces a fast and general method for restructuring classical longitudinal datasets into augmented ones. contefranz statutils A collection of statistical utilities regarding both models and data management conversodinHXL TF.db A r data package to enrichment genes to transcripts factors conversodinHXL TFO A r package to enrichment genes to transcripts factors with data from tf.db convoyinc abayes Simulate Bayesian A/B testing algorithms and evaluate the results of A/B tests with a shiny app. cookm346 AGSuite R package to generate item-level statistics for artificial grammar strings cookpa socialdefeat R package for analysis of social defeat data coolTot DtgGeriko2 R package to forecast wind gust and wet snow acretion coolTot DtgRecup R package to download hydrometeorological data over the web coolbutuseless AuCensus2011 Tools for parsing 2011 Census DataPacks from the Australian Bureau of Statistics coolbutuseless AuCensus2011.STE Australian 2011 Census Data by State. Data-only R packagoe coolbutuseless AustraliaPopulation Govt ABS data on state/national population from 1788 coolbutuseless AustraliaRoadFatalities Road crashes in Australia sourced from BITRE coolbutuseless BrisbaneBikeways R package with historical data on Brisbane bikeways coolbutuseless CP1919 Cambridge Pulsar at 19 hours and 19 minutes right ascension coolbutuseless GRIM General Record of Incidence of Mortality (GRIM) books (AIHW Data) coolbutuseless QldRoadCrashes Crash data from Qld (Australia) roads. coolbutuseless compactR R package for compacting a data.frame coolbutuseless csv2sqlite R package to read large CSV files into SQLite DB coolbutuseless csvcolr R package for reading only certain columns from a CSV file coolbutuseless ggplot2metainfo metainfo about the ggplot2 package coolbutuseless lipsum lorem ipsum for R coolbutuseless pipify Pipify or Unpipify an R package coolbutuseless qldcrime The number/rates of reported offences in Queensland, Australia. (police divisions, monthly from July 2001) coolbutuseless relaxedcsv R package for more relaxed reading of malformed CSV files coolbutuseless xtablemc Modified version of Rstats 'xtable' package to include multi-row headings. coom0054 i.Seq.aSum coopermj SummarizeByMonth coopermj SummarizeByWeek R function to summarize by week coopermj colormaker coppeliaMLA c3gitexample Test repository for the session 3: Agile and Git corallie timePack coregenomics groHMM Bug fixes for bioconductor groHMM 1.7.0 coregenomics kmap Generate mappable regions of the genome for a given K-mer length. corehunter corehunter3-r R package for Core Hunter version 3 coreykimzey heartrate coreymhudson AffyDistance corinsexton MAGNAMWAR coripenrod MAGNAMWAR cormac85 datakindr A set of tools in R for use by DataKind corneliusfritz intervisu A R package that supplies functions generating shiny applications with your own data for interactive data visualization. corneliussenf disturbanceBayes A package for estimating disturbance rates from TimeSync. correadarosaj OWLTools correadarosaj RPPSTools correadarosaj biostatRockefeller correhuela myfirst sdfs corujito filtrafilet FiltraFIlet é um pacote R (OpenCPU app) que disponibiliza uma interface web para aplicar filtros e criar um portfólio de artigos baseado em dados extraidos das bases scopus e web of science corybrunson atheory A-theory corybrunson bitriad triadic analysis of affiliation networks corybrunson cloud Geometric operations on point clouds corybrunson context Produce formal contexts (binary matrices) from data corybrunson econpanel economic experts panel survey data corybrunson ggalluvial ggplot2 extension for alluvial diagrams corybrunson missing Matrix factorization corybrunson mypackage test package corybrunson pubmed.network analysis of PubMed data corybrunson scottish.capital data and summaries from "The Anatomy of Scottish Capital" corybrunson tautable critical value tables for Kendall's tau-a corynissen GoogleLocationHistory R package to download and parse Google location history corynissen fitbitScraper R package to scrape fitbit data corynissen geocodeHERE Wrapper for the Nokia HERE geocoding API corynissen yahooFantasySports R package to use yahoo fantasy sports API cos-archives osfr OBSOLETE - see https://github.com/chartgerink/osfr cosgriffc bsts262-proj1 Intro to making your own packages for R. cosmicexplorer acceleRated but wait dude, what if we put macros INSIDE the macros cosmicexplorer comparisort Because comparison sorting shouldn't be that hard. cosmicexplorer xmlr mirror of xml cran package, from the version 3.98-1 source tarball at http://www.omegahat.net/RSXML/ cosname recharts An interface to ECharts courtiol LM2GLMM This is the repository for the R package I use for my teaching about linear models courtneythomas oatools Tools for analyzing gaps in ocean acidification data courtsbr JurisMiner Judicial decisions' miner courtsbr TRTs Scraper dos Tribunais Regionais do Trabalho courtsbr dje A scraper that downloads DJEs courtsbr djt Downloader and scraper for DJTs (Diários da Justiça do Trabalho) courtsbr esaj Scrapers for many e-SAJ systems courtsbr scraperTJRS Scraper do TJRS courtsbr stfstj Precedents from Brazilian High Courts (STF and STJ) courtsbr tjal Scraping decisions of Brazilian State of Alagoas high court courtsbr tjdf Webscraping da Jurisprudência do Tribunal de Justiça do Distrito Federal courtsbr tjsp Scraper do TJSP (usa esaj e contém funções extras) couthcommander PhysicalActivity R package couthcommander coleR misc R functions couthcommander lastplayerpicked couthcommander misc couthcommander nbpMatching R package for optimal non-bipartite matching couthcommander pkdata cpanse bfabricShiny provides access modules and functions for the FGCZ's bfabric system. cpanse recmap C++ implementation of the RecMap MP2 construction heuristic. cpauvert psadd PSADD -- PhyloSeq ADDitions cpbonnell winlockr cpenn-usgs prmsTools IN DEVELOPMENT. Tools for analysis of PRMS model output cpfaff rtematres An R package to exploit vocabularies and annotate data cphotiadou scenarioIndices calculation of indices for the KNMI14 scenarios cpsievert LDAvis cpsievert LDAvisData cpsievert XML2R EasieR XML data collection. cpsievert bbscrapeR cpsievert chadwick cpsievert colourPalette cpsievert knitPost cpsievert pedestrians http://cpsievert.github.io/pedestrians/ cpsievert pitchRx Tools for scraping MLB Gameday data and Visualizing PITCHf/x cpsievert rdom cpsievert runpkg An R client for unpkg.com cpsievert testdom cpsievert tourbrush cpsievert vist cpsievert zikar cpsyctc CEFunctions My personal collection of functions cqgd pky cquigley rPerfFunc Performance Functions craddm eegUtils A basic R package for plotting EEG data craddm firfiltR craddm metaSDT A simple R package for calculating (meta-) SDT measures craiggrabowski filterr craiggrabowski predictr craigroth pct convert numeric to percent (as character) cramanuj JAGUAR JAGUAR: Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) cranedroesch panelNNET crarlus VFranger VFranger predicts virulence factors from a set of protein sequences crarlus data4paprbag This package provides trained classifiers to be used in the package paprbag crarlus mySimpleTest Simple test crarlus paprbag Pathogenicity prediction of bacterial genomes crazybilly Tough-Bubbles crazybilly muadc an R package with everyday functions for work at Millikin University's Alumni & Development Center crazybilly muaddin Rstudio add-ins for use at Millikin University crazybilly mumodels a R package for automatically building Annual Fund models using our data crazybilly rmapcounties an R package for mapping counties crazycapivara imapr An R Interface to IMAP crazycapivara openlayers An R Interface to OpenLayers crazycapivara openlayersr An R Interface to OpenLayers crazycapivara owmr An R Interface to OpenWeatherMap crazycapivara pyr Do it the Rythonic way crcox ShinyATLROI A Shiny app for playing with definitions of an anterior temporal lobe ROI. crew102 patentsview An R client to the PatentsView API crew102 rapidraker A fast version of the Rapid Automatic Keyword Extraction (RAKE) algorithm crew102 slowraker A slow version of the Rapid Automatic Keyword Extraction (RAKE) algorithm cribbie equivalencetests Equivalence tests cribosch matchsurv cristianmejia00 heatmaps3 cristianmejia00 keywordGetter crj32 M3C crockettcobb R-helper croeder gmodels_R https://cran.r-project.org/web/packages/gmodels/index.html cromanpa94 muPHY Multiple utilities for phylogenetic analyses crowcanyon dssatr R bindings for the DSSAT CSMs crowding fexpr R package providing an interface to promises and "..." argument-lists crowding lazr Effcient purely functional and lazy data structures for R. crowding memo An R package for In-memory caching. crowding stacktrace a low-level stack trace for R crowding vadr Making R a better language crsh citr RStudio Addin to Insert Markdown Citations crsh papaja papaja (Preparing APA Journal Articles) is an R package that provides document formats and helper functions to produce complete APA manscripts from RMarkdown-files (PDF and Word documents). crsh prereg crsto-ro zileLibereRO test R crtahlin AIRS_Data_Import AIRS Data Import crtahlin ZakMonitoR crtahlin emfit Emfit data analysis. crtahlin medplot Functions for drawing graphs in R visualizing medical information. crtahlin peRiodic crtahlin plotTests Plot of medical data test results. crtahlin readCortrium crubba NZelection Datasets on New Zealand General elections crubba Rwebdriver Rwebdriver crubba bundestagswahl Datasets on German Bundestag elections crubba crmisc Frequently used functions used in my projects crubba htmltab An R package for assembling data frames from HTML tables (fka htmltable) crubba tisch A ❤️ generator of presentation tables for R crukci-bioinformatics prostateCancerCamcap R dataset for the Cambridge prostate cancer cohort (Camcap) crukci-bioinformatics prostateCancerGrasso Data package for the Grasso prosate cancer dataset crukci-bioinformatics prostateCancerStockholm R dataset for the Stockholm prostate cancer cohort crukci-bioinformatics prostateCancerTaylor data package for the Taylor et al prostate cancer dataset crukci-bioinformatics prostateCancerVarambally R dataset for Varambally prostate cancer dataset crukci-bioinformatics redpanda R package to perform various analysis tasks on public microarray datasets that we have collected crushing05 BBS.fiftystop crushing05 BBS.tenstop Raw BBS 10-stop data crushing05 BayesCorrOcc crushing05 FAC.sim Identifiability, accuracy, and bias of latent migration survival rates using full-annual-cycle integrated population models crushing05 corrNmix Correlated-detection N-mixture model crushing05 crushingr crushingr crushing05 iso.assign2 crussellmiller Snowfall Demo package from Martin Morgan's workshop Jan 2017 cryptomanic learnerR No description or website provided. cryptomanic tweeteR An R package to simplify the use of twitter API and make twitter data analysis easier csbl-usp CEMiTool Co-Expression Module Identification Tool (CEMiTool) official repository csbl-usp collapseR cscheeder HTSvis cscheid elephant Elephant exposes a environment for R transparently backed to a git repository ("An elephant never forgets") cscheid guitar guitar provides libgit2 bindings for R cscheid my_test_repo cscheid rgithub R bindings for the github API cscheid rpython A fork of http://cran.r-project.org/web/packages/rPython/index.html to support non-system python deployments on OS X cschroed-usgs gitplay cschroed-usgs jaguaR Baby's first R package csclab RMut RMut: R package for Boolean sensitivity analysis about various types of mutations csf-ngs forskaller simple small API for our superior in house LIMS built by Heinz csf-ngs illuminasavr Parses and Plots Illumina SAV files csgillespie HMMs csgillespie abcpmcmc csgillespie addinmanager RStudio addin management made easy csgillespie addinmanger csgillespie benchmarkme Crowd sourced benchmarking csgillespie benchmarkme-data R package containing data from past benchmarks csgillespie dratTravis csgillespie efficient The associated R package for Efficient R programming csgillespie efficientR Efficient R programming: a book csgillespie efficient_pkg A pkg for the efficient book csgillespie minifyHTML A binding the Javascript-based HTML compressor/minifier csgillespie poweRlaw This package implements both the discrete and continuous maximum likelihood estimators for fitting the power-law distribution to data. Additionally, a goodness-of-fit based approach is used to estimate the lower cutoff for the scaling region. csgillespie raddins A collection of RStudio addins csgillespie renamer csgillespie roxygen2Comment An Rstudio addin for adding and remove roygen2 comment csgillespie rtypeform An R interface to the 'typeform' API. csgillespie testpkg2 csgillespie testpkg3 csgillespie typeform An R interface to the typeform data APU csgillespie voltagefit csgroen RTNsurvival RTNsurvival: An R/Bioconductor package for survival analysis using transcriptional networks and regulons cshukla oligoGames A R package to analyze data from different massively parallel reporter assays csiro-crc-spin RCSpin The CRC-SPIN model implemented in R using the Reference Classes Object framework. csiro-crc-spin SpinModels An implemtation of the CRC-SPIN model R usng Rcpp. csiro-crop-informatics granular A wrapper and shiny app for mixdist specifically applied to starch granule distributions csiu candyplay candy survey data csiu candysurvey R package: 2015 candy survey data csiu foofactor R package for foo-ing factors (class assignment) csiu hmmpickr Pick the model whose states are the most well-defined csiu skyscraper R package: 100 Tallest Completed Buildings in the World cskmlui hello-world cskmlui hkex.api cskmlui test csmoxford TreatmentData Patient Level Treatment Data plots csmoxford csmIndexer This package contains a small indexer which produces a pdf of the contents of a folder. csmoxford prettyTables This is an R package to assist the creation of tidy tables csmoxford robustToxicities Robust toxicity programs for R csoneson SEE csoneson compcodeR csoneson countsimQC countsimQC - Compare characteristic features of count data sets csoneson iResViewer csoneson iSEE R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class csp-inc geer R package to facilitate working with Google Earth Engine data csp-inc rmdy csqsiew NFreq Calculates the degree and neighborhood frequency of words csqsiew langnetr Home-made package to convert linguistic stimuli to a network representation. csqsiew netlangr csqsiew samr css-konstanz geomerge Geospatial Data Integration css-konstanz meltt Matching Event Data by Location, Time, and Type css-konstanz mwa Matched Wake Analysis cstubben ENAbrowseR Search the ENA Browser REST URL cstubben aRkivet R interface to the the Norway Digital Archives cstubben bsve BSVE data API cstubben euPMC Search Europe PubMed Central cstubben genomes2 R functions to collect genome sequencing project data from NCBI cstubben norwayr R interface to the the Norway Digital Archives cstubben pmcXML Tools for searching and parsing full text XML articles and tables in Pubmed Central cstubben popbio Construction and analysis of matrix population models cstubben rMoore Moore genome citation tracker cstubben trinotateR Trinotate annotation report summaries in R cszang BYmap Rudimentary maps of Bavaria. cszang aindex Anomaly Index for Dendrogeomorphology cszang awc Extract soil water holding capacity from Webb et al.'s texture based grid cszang bootRes bootstrapped response and correlation functions in R cszang circus Exact simulation via circulant embedding cszang eumap Small package to provide European map layer for ggplot2 cszang fridge Data analysis project management for R cszang garlic some legacy dendro stuff cszang guessex Explore LPJ-GUESS output cszang histalp Extract HISTALP grid data for coordinate pairs cszang mthemer A ggplot2 theme to match the mtheme latex beamer theme cszang oblique greet with oblique strategy on package startup cszang oink Non-serious #rstats package to notify at the end of long-running pipe. cszang past5 Read in corrupted fh files from PAST5 export cszang pdsi Calculate (sc)PDSI in R cszang raresa Grid based spatial resampling cszang regmap Small package to provide regional map layers for ggplot2 cszang sawmill forest growth and yield metrics cszang sdpalette 2-D colour palette for mapping anomalies in 2 variables simultaneously. cszang squadron Extract grid cells from a NetCDF file based on a list of land ids. cszang sugar Syntactic sugar for R cszang treeclim Numerical calibration of proxy-climate relationships cszang tumtheme TUM compliant ggplot2 theme cszang tusk Convience functions for dealing with gridded climate data in netcdf format cszang velcro Convenience tools for my daily R ctaglioni demItaly Demographic data from Italy ctbrown magrittr.plus Drop-In Replacement Of 'magrittr' To Introspect Recursive Objects ctbrownlees R-Package-dynamo ctbrownlees R-Package-lproj ctbrownlees R-Package-nets R package nets ctesta01 FuzzyCleaner A Shiny app for cleaning CSV data that uses Levenshtein distances for approximate string matching ctesta01 QualtricsTools Using R, Shiny, Pandoc, JSON, CSVs and more to automate processing Qualtrics surveys ctesta01 qualtrics-R-package ctfysh rccess ctfysh rlingo ctfysh sfc A tool for substance flow computation ctkremer priceTools priceTools - an R package repository ctlab ClusDec ctlab fgsea Fast Gene Set Enrichment Analysis ctlab gatom Finding an Active Metabolic Module in Atom Transition Network ctlab phantasus ctlente apida Acesso à API dos Dados Abertos via R ctlente bivr An R package to help with bivariate analyses ctlente checkr An R package for data validation ctlente cts An R package to scrape FiveThirtyEight's Trump Score ctlente doctr An R package to consistently validate and compare datasets ctlente monitr An R package to monitor Facebook pages ctlente scanr An R package for data validation ctmann NettlePackage Things One Ought to Know How to Do, Compiled ctmann excel.wrappeR ctmann nettles.toolbox ctmm-initiative ctmm Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data. ctmm-initiative ctmm-webapp Shiny web app for ctmm package ctmm-initiative ctmmweb Shiny web app for ctmm package ctriandafillou cat.extras plotting and fitting functions ctriandafillou flownalysis R functions for analyzing flow data cttedwards FLaspm FLR age structured production model cttedwards bdm Bayesian biomass dynamic model cttedwards leopard An R package for simulating the dynamics of a hunted leopard population cttedwards lhm Life-history module cttedwards seabird2 A collection of functions to build and interrogate SeaBird models cttedwards stanUtils utils for running cmdstan in R cttobin ggthemr Themes for ggplot2. cttobin sqlr SQL Query Builider cturbelin redisProgress Tasks progress monitoring using Redis backend in distributed settings ctuwuzida pmu A R package for portfolio management utilities cuche27 CSS extract data from html documents with css selectors cuche27 RWebServer A R Package to easily create a web server based on R cuche27 pokemon cuche27 project Packages that help keeping files ordered in your R projects cucobein fama Eugene Fama cugliari enercast Electrical energy forecast tools cugliari gtop R implementation of GTOP cuihaibo1 123 cuihaibo1 DRWPClass cuihaibo1 DRWPClass-GM cuihaibo1 drwPSurv_1.0.tar culkink greatwhite A collection of functions for retail analytics in R. culkink retail A collection of functions for retail analytics in R. curryhilton ci curryhilton spm Statistical Process Measurement - Shiny Application curso-r ggilberto curso-r mcUFSCar2015 Material e apresentações do minicurso dado na UFSCar dado nos dias 17, 18 e 19 de setembro de 2015. curso-r pacote pacote novo curso-r pu.api curso-r pu.deps curso-r pu.forcats curso-r pu.shiny curso-r puBuild curso-r puTemplate Template para power-ups curso-r questionarioAula06 Questionario para aula 06. curtisalexander CRAmisc Personal R functions for data analysis curtisalexander blah-pkg Minimal R package for testing cutterkom germanpolls Scrape German polling data from Wahlrecht.de. cuzaheta FirstGit Este es es el primer intento utilizando git, github y rstudio para general un entorno de trabajo rapido cvarrichio Matrix.utils cvarrichio algor No description or website provided. cvarrichio asort Generalized sorts for special applications cvarrichio grr cvarrichio hordr cvarrichio rowr Row-based functions for R objects. cvarrichio rpart.utils Tools for parsing and manipulating rpart objects, including generating machine readable rules. cvborkulo IsingFit This network estimation procedure combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion to identify relevant symptom-symptom relationships. These relationships define connections in a network. cvborkulo NetworkComparisonTest Statistical comparison of two networks with respect to global strength cvborkulo PercolationIndicator Capturing the dynamics of a network in a single parameter: the percolation indicator cvirgo group7_project cvirgo stat297-finalproject cvitolo amca Automatic Model Configuration Algorithm (R package for hydrological modelling) cvitolo curvenumber curvenumber: an R package to calculate Base Flow Index and Curve Number for gauged and ungauged river catchments cvitolo fuse fuse: an R package implementing the Framework for Understanding Structural Errors cvitolo hddtools Hydrological Data Discovery Tools (R package for hydrology and open data) cvitolo rdefra An R package to interact with the UK AIR pollution database from DEFRA cvitolo rnrfa RNRFA: an R package to interact with the UK National River Flow Archive cvoeten buildmer Automatic model comparison for mixed-effects models (lmer/glmer from lme4 and gamm from gamm4) cvoeten permutes Permutation testing for time series (e.g. EEG) data cw25 opencpu_service_ci_tutorial Combining R, testthat, OpenCPU, Docker, and Travis-CI to develop and test a containerized RESTful statistical computing service cwarden45 COHCAP Bioconductor package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data cwatson brainGraph Graph theory analysis of brain MRI data cwbartlett manogram cwcartmell maRkov Goodness-of-fit Tests for Binary Markov Chains cwcomiskey mapapp An R package to create interactive heat map confidence intervals cwcomiskey varyres An R package to create variable-resolution heat maps cweditorial padpics cwickham munsell munsell colour system for R cwolfsonseeley discoappend cwolfsonseeley discoscape cwolk ShinyConc ShinyConc R package cyber4paleo coorClimR Coordinate Climate in R cyipt cyipt Project management and overview documents for the Cycling Infrastructure Prioritisation Toolkit (CyIPT) cyipt stats19 Repository of code, examples and sample data for analysis of UK road traffic casualty data cyones miRNAss A semi-supervised graph based method for automated genome-wide microRNA prediction. cyrilmi myfunctions R package containing different functions cyrilmi teaching some R functions for teaching cyrus-and iq I/Q file analysis toolkit in R cysouw qlcData Datamanagement for Quantitative Language Comparison cysouw qlcMatrix Utility sparse matrix functions for Quantitative Language Comparison (QLC) cysouw qlcRecode Data recoding functions for Quantitative Language Comparions (QLC) cysouw qlcTokenize Functions for orthography processing in Quantitative Language Comparison (QLC) cysouw qlcVisualize Visualization for Quantitative Language Comparison cytomining cytominer Methods for Image-Based Cell Profiling cytomining cytominergallery Examples of cytominer workflows cytomining cytominerworkshop cytominer workshop cytomining cytoplot Package for visualizing high-dimensional single-cell data cytomining cytotools Command-line Tools to Get Things Done Using Cytominer cytoscape RCy3 New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community cytoscape r2cytoscape R functions for Cytoscape automation cz-ye DECENT Differential Expression with Capture Efficiency adjustmeNT czarrar bigalgebra This is a mirror to the bigalgebra repository on rforge: https://r-forge.r-project.org/projects/bigmemory czarrar bigextensions Additional functions to work with big memory objects czarrar connectir Advanced functional connectivity functions and scripts including ones for connectome-wide association studies. czarrar niftir Read/write nifti files czech-radio constCRo czeildi cs-docker-r-pkg-test test R pkg build on codeship with docker czeildi shinypackage a package containing a dummy shiny app for testing purposes czeildi shinypackageapp a package containing a dummy shiny app for testing purposes czibman fars_package czigler HEIfunctions czigler arepa czxa FMFE 一个关于金融数学和金融工程课程的R包，目前正在开发中 czxa TEMP d-bohn VIPaddins addins that may be useful for lab-related work d-bohn facereadeR Utilities for working with FaceReader 6.xx text output. d-bohn packageLoader an R package to install multiple packages from library all at once d-cameron StructuralVariantAnnotation R package designed to simplify structural variant analysis d-cameron svqsc Structural Variation Quality Score Calculator d-cameron wipscripts d-j-david miscR A fully functional R package designed to simplify some of my commonly performed tasks d-mathlete netOrdeR centrality analyses in networks d-qn swiMap Misc helpers for mapping, country translations, geographically based indicators. Special focus on Switzerland d-qn swiRcharts d-qn swiTheme R graphic theme and convenience layout functions for swissinfo's look d-qn waffle-master d3b-center RDiseaseXpress R Package to access the Disease Express Database d3m-purdue d3mLm d4ndo binaryLogic Binary Logic GNU R Package d93espinoza barcode2 Watch d93espinoza barcodetrackR barcodetrackR: an R package and app for tracking cellular barcode experiments. dBenov cisearch This is a dummy R package for testing. dKvale aermod R package providing a data frame interface for performing AERMOD runs dKvale aerscreen An R package providing a data frame interface for performing AERSCREEN runs dKvale aircas dKvale bpip An R package for EPA's building downwash model BPIP dKvale installEPA R package for downloading EPA air models - AERMAP, AERMET, AERMOD, AERSCREEN, BPIP, MAKEMET dKvale mnrisks R package for Minnesota's statewide air modeling platform dKvale mnrisks2011 R package for analyzing the 2011 NEI air modeling results for Minnesota dKvale newProj dKvale receptors R package to generate and edit simple point receptor grids for EPA's air dispersion model AERMOD daattali Rlist Easy way to navigate and explore list structures in R (abandoned project) daattali addinslist Discover and install useful RStudio addins daattali colourpicker A colour picker tool for Shiny and for selecting colours in plots (in R) daattali ddpcr Analysis and visualization of Droplet Digital PCR data in R and on the web daattali ezknitr Avoid the typical working directory pain when using 'knitr' daattali ezrender Render markdown/HTML reports from R without the typical pain of dealing with working directories daattali ggExtra Add marginal histograms to ggplot2, and more ggplot2 enhancements daattali lightsout Lights Out game implemented in R daattali rsalad A mix of useful R functions that are good for you daattali rstudio-addins List of useful RStudio addins made by useRs daattali shinyHelpers daattali shinyalert daattali shinyforms Easily create questionnaire-type forms with Shiny daattali shinyjs Easily improve the user experience of your Shiny apps in seconds daattali timevis Create interactive timeline visualizations in R daattali timevisBasic Helper package to learn advanced 'htmlwidgets' tips dadippold DavidPackage dadrivr ffanalytics ffanalytics R package dads2busy dataplumbr daewoooo BreakPointR R Package for breakpoint detection in single cell Strand-seq data. daewoooo CrossLinkR This package is currently under the development. daewoooo HapSCElocatoR R package to detect SCE breakpoints in yeast Strand-seq data daewoooo SaaRclust daewoooo SingleCellToolkit daewoooo StrandPhaseR R Package for phasing of single cell Strand-seq data daewoooo YeastSCElocatoR R package to detect SCE breakpoints in yeast Strand-seq data daflealab genlabfunc A selection of packages for common tasks in the hall lab. dahcase mbgstacking Functions to run stacked generalization daheelee timelineR daheelee timelineS R package 'timelineS' dahtah eyelinker R package for reading Eyelink eye tracking data dahtah fixedpoints fixedpoints: an R package for doing the same thing repeatedly dahtah imager R package for image processing dahtah imagerstreams dahtah vecpack an R package for packing stuff into vectors (and making it easier to interface with optim) daianemarcolino FGVdados Time series by FGV|IBRE daianemarcolino teste2 teste2 daigazi bamapr baidu map and amap api by R daijiang dli55 my collections of functions daijiang hillR An R pakage to calculate diversity through Hill Numbers daijiang phyr Collect and update functions about phylogenetic analyses daijiang rnps R package to get National Park Service species lists. daishironishida hutchinhillproject Calculates the average age of the williams faculty dajmcdon aimer dajmcdon cplr Compressed and penalized linear regression dajmcdon myFKF dajmcdon spasm dajuntian emr4washu Make EHR easier to work with dajuntian helloworld dakep ecoscope_2017_04_day3 UBC Ecoscope Workshop on Writing R Packages dakep pense-rpkg R Package implementing the Penalized Elastic Net S- and MM-Estimator for Linear Regression dakl clinseqr dakl oncoprint Create beautilful oncoprints in R dakl rdk My R library with some commonly used functions dakni TestPackage dakni reprodpkg This is just a test package in order to see how to work reproducibly without RStudio dalejbarr RR53 dalejbarr assessr tools for computer-aided assessment of student RMarkdown assignments dalejbarr boat_FLE dalejbarr elan R package for reading XML-format .eaf files from ELAN annotation software dalejbarr forsterUVA Reproducing UvA Analyses of Jens Förster Studies dalejbarr funfact Functions for planning and analyzing factorial experiments in R dalejbarr gmpm generalized multilevel permutation models dalejbarr moodlecnx Connect to moodle from R dalejbarr simgen SIMultaneous GENeralization across stimuli and items dalejbarr webex RMarkdown tools for creating web exercises for student self-assessment dalekube hR Manipulate and visualize people data in meaningful and common ways for HR analytics. daleskim detectpme daleskim dskTools daleskim dsktools daleskim king.cmfp dalpozz unbalanced Package that implements several techniques to re-balance or remove noisy instances in unbalanced datasets. dalpozz warping Probability warping and calibration after undersampling dalsama1 Rlst No description or website provided. daltare cedenTools cedenTools package daltare dkanTools damelunx conivol An R package for the (bivariate) chi-bar-squared distribution and conic intrinsic volumes dami82 CellSignalingTools Analysis of Images for Molecular Biology Applications dami82 FluoImagingTools No description or website provided. dami82 PromoterTools dami82 TCGAretriever dami82 businessPubMed dami82 damitools Tools for Bioinformatics and Data Science Projects dami82 easyPubMed easyPubMed package for R - dev version dami82 ggradarSIZE damidseq RDamIDSeq All in R DamID sequencing pipeline damienchallet RemplacementBootstrap R package that implements the Replacement Bootstrap dan410 dansRfunctions dan410 sfdasim dan410 sseigfun dandermotj MetSizeR Estimating Sample Sizes for Metabolomic Studies dandermotj mmr Measuring Market Risk in R dandermotj monzo R client for Monzo Banking API dandinoar TrypR Paquete de R para anáisis genómicos en tripanosomátidos dandinoar packageToGit Pruebas de sincronización dev-users dandinoar screening Funciones para el análisis de datos de citometría dandinoar tutorial danfbflynn FIA danfbflynn fdabun Abundance-weighted dendrogram-based functional diversity metrics dangoldberg580 FarsMap Traffic Fatality Mapping dangulod DAF Usefull finance functions dangulod ECTools danhan52 mateable Tools to Assess Mating Potential in Space and Time danheck MCMCprec Precision for discrete parameters in transdimensional MCMC danheck MCMCprecision Precision for discrete parameters in transdimensional MCMC danheck RRreg R package for multivariate analyses of the randomized response technique danheck metaBMA Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis danicat datasus An Interface for the Brazilian Public Healthcare Data Repository (DATASUS) for the R Language daniel-gerhard MultiCA R package to perform multiple tests in between class analysis daniel-gerhard goric R package GORIC (Generalized Order Restricted Information Criterion) daniel-gerhard mcprofile R package to calculate signed root deviance profiles for linear combinations of parameters in a glm. Multiple tests and simultaneous confidence intervals are provided. daniel-gerhard mcroast R package for testing multiple contrasts in the multivariate linear model by rotation tests daniel-gerhard medrc This is an older version of the medrc package. Please, take a look at the following link for an updated version: daniel-gerhard mumocomp Simultaneous Inference for Parameters in Multiple Models daniel-gerhard predIntervals R package to calculate prediction intervals to include k of m future observations for normal and non-normal data. daniel-gerhard qpcrmix Analyzing quantitative real-time PCR data by linear mixed models daniel-gerhard qpcrnlme R package for quantitative real-time PCR analysis using sigmoidal mixed models daniel-gerhard standrc R package for dose-response modelling using rstan daniel-wells comixr Shared component gaussian mixture models in R daniel-wientjens homeworkdaniel daniel-wilkerson43 aem3DPrep Prepare raw chemical and met data to be pushed into AEM3D daniel01001000 greengenes13.8_85MgDb This is an R package with the greengenes 13.8 database 85 similarty cutoff OTU set for annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git) daniel01001000 greengenes13.8_88MgDb This is an R package with the greengenes 13.8 database 88 similarty cutoff OTU set for annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git) daniel01001000 greengenes13.8_91MgDb This is an R package with the greengenes 13.8 database 91 similarty cutoff OTU set for annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git) daniel01001000 greengenes13.8_94MgDb This is an R package with the greengenes 13.8 database 94 similarty cutoff OTU set for annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git) daniel01001000 greengenes13.8_97MgDb This is an R package with the greengenes 13.8 database 97 similarty cutoff OTU set for annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git) daniel1noble cogdat Function for processing cognition data files daniel1noble ibutt Package for processing and organising temperature data generated from iButtons and Hyrdochrons daniel1noble metaAidR Functions for aiding meta-analyses in Ecology, Evolution and beyond daniel1noble metaDigitise Digitising functions in R for extracting data and summary statistics from figures in primary research papers daniel258 CoxBinChange daniel258 Daniel Personal package daniel258 GEEMediate daniel258 GEEmediate R package, development version. Mediation analysis in generalized linear nodels using the difference method daniel258 ICcalib R package, development version. Survival analysis with interval-censored status change time of a binary covariate danielalcaide mclean MCLEAN (Multilevel CLustering Exploration As Network) proposes a visual analytics clustering methodology for guiding the user in the exploration and detection of clusters. We thereby combine a graphical representation of the clustered dataset as a network with the community finding algorithms into one coherent framework. Our approach entails displaying the results of the heuristics to users, providing a setting from which to start the exploration and data analysis. This is considered multilevel because allows the user to have an overview and detailed of the merging of elements into clusters. danielbraas MetabFUN danielcanueto Dolphin danielcanueto dummy danielcanueto rDolphin Reliable automatic profiling of 1D 1H NMR Spectra, with additional tools for dataset exploratory analysis danielcfurr edstan danielderrick defunctions danielecook rdatastore R package for accessing google datastore danielfhenrique789 profitmaximization danielfisherl requiR a package to upload multiple libraries with a single command danielhorn moobench danielhorn multicrit_result_test danielmarcelino FPTP2AV Simulate Election Outcomes for AV Given FPTP Votes. danielmarcelino STF Web scraping The Supreme Court danielmarcelino SciencesPo Repo for the R package SciencesPo danielmarcelino SoundexBR Soundex (Phonetic) Algorithm For Brazilian Portuguese danielmarcelino TransformMe danielmedbar KWSTCReclassifRef danielmoralesx dmorales.fars danielreiss SGS2R R package to extract data from Central Bank of Brazil SGS time series system danielwilhelm R-ME-test R package implementing tests for hypotheses about measurement error danielwilhelm cats No description or website provided. danilinares quickpsy quickly fits and plots psychometric functions for multiple groups danilito19 health-food danilito19 imputeme simple R imputation package danilofreire prisonbrief An R package that returns tidy data from the World Prison Brief website. danioreo fastman fastman is a R package that plots GWAS summaries to Manhattan plots in a fast way. danjlawson badMIXTURE R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes dankelley burndown An R package for burndown plots dankelley circuit dankelley dac download and cache files dankelley dc download and cache files dankelley hemo health-monitoring software in R language dankelley imagedata Digitize data from an image dankelley oce R package for oceanographic processing dankelley ocedata oceanographic data to support oce package dankelley plan R package for project planning dankelley srs student record system dankelley teos10 R package for thermodynamic equation of seawater danklotz visCOS lightweight, R-based visualisation tool for COSEROreg danlanguedoc farsdata danloe dukeR Tools for analysing Duke University Hospital data danlwarren ENMTools ENMTools R Package danlwarren RWTY R We There Yet? danlwarren moses.R danmalter census R package to get US census data danmalter censusR R package to get census data danmrc weak-instruments-r Development of weak instruments package for R danmsf dplytab A simple way to create multi-level statistic tables that integrates with the dplyr syntax. danno11 SMVCIR dannyfig archive Personal R package containing files and functions I find useful dannymorris QuickR an assortment of simple functions danorama hattrupbasket r package providing functions to calculate and visualize advanced basketball statistics danro9685 OncoScore OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries. dansbits wat_catchR An R client for the Wattle exception reporting service dansbits wordsRhard An R package providing utility functions for basic text manipulation and metrics dantonnoriega marketloanr dantonnoriega sppedr tools for working with chicago police and public school data dantonnoriega xmltools Tools to look at xml data. Has functions similar to the `tree` command line tool ( xml_view_tree). Allows one to find paths quickly, including just terminal node paths (xml_get_paths). Also has two functions for helping convert xml code to data frames (xml_to_df and xml_dig_df). danvilar R-code danwwilson censaus Australian census data packaged for R danzhuibing RAmap R Interface to Amap danzhuibing minidygraphs tutorial of htmlwidgets: use dygraphs as example daob SQP daob lavaan.survey.fiml Complex survey standard errors for Structural Equation Models in R daosang PDI2015 Bi-Clustering Data Using Co- similarity : Application on Metagenomics daosang terDA Experimental analysis of new Algorithms for Learning Ternary Classifiers daosang terDA.CPLEX terDA using Free CPLEX Software For Academics darachm rheocyto flow cytometry analysis tools daranzolin ggtextparallels Gospel parallels created with ggplot2 daranzolin maxprepsr Web scraper for www.maxpreps.com daranzolin myAddins A collection of RStudio Addins and Gadgets daranzolin rCAEDDATA The California Department of Education in R daranzolin rbiblesearch Get biblical passages from BIBLESEARCH API daranzolin rcanvas R Client for Canvas API daranzolin rcicero R Client for Cicero API daranzolin rperseus Get primary texts from the Perseus Digital Library daranzolin typeStringsGadget Type Strings Unencumbered dardisco LogisticDx LogisticDx dardisco survMisc survMisc dariomasante bnspatial An R package for the spatial implementation of Bayesian Network in R and more dariomasante landscapeR A landscape simulator for R daroczig AWR.KMS A Simple Client to the AWS Key Management Service daroczig AWR.Snowflake Snowflake JDBC DBI Wrapper for R daroczig PWA Pulse Wave Analysis in R daroczig binancer R client to Binance API daroczig burn-demo Demo R package created in 30 mins at a BURN talk demonstrating that package development is fun and easy daroczig fbRads Analyze and manage Facebook ads from R using this client library to access their Marketing APIs daroczig fbRads-transition Temporary updates to https://github.com/cardcorp/fbRads, don't use this! Will be merged back to the upstream repo sooner or later daroczig migration.indices Migration indices daroczig r-test Minimal R package including unit tests daroczig saves An R package for fast loading specified variables from binary files daroczig singR helper functions to "sing" songs with R daroczig within R implementation of the most frequently used three-dimensional fixed effects panel data models the appropriate Within estimators. darokun calgrade Functions to calculate grades for students of Scientific English IntMOSH at LMU darrellpenta APAstyler APA format your R output; p values, trim leading zero, Latex/rMarkdown friendly darrellpenta dissertate Some random functions for dissertation stuff. darrennorris parcelareadev R functions. Nonlinear plot processing and area calculations darrennorris rgps Functions to import and summarise tracklogs and waypoints from .gpx files. darrennorris rppbio R functions for processing and analysing PPBIO data. darrenxlw HOMEWORKWAN darsoo KAROLA KAROLA darunabas phyloregion An R Package For Putting Phylogenetic Biogeography On The Map daryabusen fueri dashaub DidacticBoost A simple demonstration and implementation of gradient boosting dashaub designmatrix Tools for Creating Design/Model Matrices with Dates in R dashaub supervisedPRIM Supervised learning using Patient Rule Induction Method dashboardsfhi dashboardgraphs Flexdashboard graphs dashee87 betScrapeR R package to scrape live sports betting odds dashee87 footballR R package to obtain football (soccer) data from APIs dashee87 jobbR R wrapper for the Indeed API dasisneros das1 data-atelier newsExtractoR Extract information from newsapi.org data-cleaning deducorrect An R package for rule-based record correction and imputation data-cleaning editrules R package for handling, checking and enforcing data rules data-cleaning errorlocate Find and replace erroneous fields in data using validation rules data-cleaning validate data-cleaning validate.simplify data-cleaning validatetools data-steve blogtools tools for helping me blog data-steve brokenCSV Generates report on comma-broken status of CSV(s), including broken rows and potential offending columns needing to be quoted in file. If path param is a folder, for readability a report named \file{csv_comma_broken_report.txt} is dropped into path folder and opened automatically to source pane. But if path param is only a file, then the report … data-steve googleformr Collect data programmatically with confidence and convenience. No permissions, no authorization, yet all the control of Google Forms data-steve holstr Functionality you always want at your side data-steve kleentex text cleaning functions data-steve lassie data-steve medium2jekyll scrape your medium acct and transfer/transform it for github.io jekyll data-steve reboot update R packages after I've updated R versions data-steve simsam somewhere between simulation and sampling data-steve supportr functionality to help R-devs embed functions in their own packages to get support from their users programmatically data-steve useResearch Provides User Research Capabilities to the R Community at the Functional Level data-steve valiData validates data imports in analysis pipeline data210g gbccmarkdown R Markdown Templates for GBCC databio MIRA R package for Methylation-based Inference of Regulatory Activity databio RPIM Calculating epigenetic heterogeneity databio epihet Calculating epigenetic heterogeneity databio projectInit R project initialization databio simpleCache Quick R caching for reproducible big data projects databrew databrew databrew: empowering research and business through education in data science databrew gsod R utilities for accessing NOAA Global Surface Summary of the Day Data databrew nd3 ND3 - based on Network D3 but slightly different databrew portfoliodash Portfolio dashboard for the World Bank / IFC datacamp IRkernel.testthat datacamp R2BayesX Fork of CRAN R pkg R2BayesX datacamp RDocumentation R package to integrate rdocumentation.org into your R workflow datacamp Rdocumentation Integrate R with http://www.Rdocumentation.org datacamp datacamp R package to create interactive courses for www.datacamp.com datacamp datacampAPI A set of functions to safely set, get, remove and check variables used by DataCamp's R packages datacamp datacampSCT Help functions for the Submission Correctness Tests datacamp dbconnectr Fetch credentials on the fly as you connect to databases datacamp r-package-parser R Package to parse R documentation files for RDocumentation datacamp swirlcamp Wrapper around swirl for use on the DataCamp platform datacamp testwhat Write Submission Correctness Tests for R exercises on DataCamp datacamp testwhat.ext extensions (high-level SCTs) for testwhat datacamp tutorial R Package to convert R Markdown files to DataCamp Light HTML files datacloning dcapps Apps for teaching hierarchical models datacloning dcextras datacloning dclone Data Cloning and MCMC Tools for Maximum Likelihood Methods datacloning dcmle Hierarchical Models Made Easy with Data Cloning datactivist helpR Se faire aider dans R est désormais aussi simple qu'un chat. datadotworld data.world-r R library for data.world datadotworld dwapi-r R client package for data.world API datafaust Data-Incubator datafaust caRshop R Package for interfacing with VIN decoding services courtesy of the NHTSA datafaust cabbietools Functional RBIN processing library for TLC data: intended to help streamline querying datafaust geonyrkR R library for interfacing with NYC Open Data Geoclient V1 dataframing archive dataiscoming dataiscoming Dataiscoming package datalimited datalimited Stock assessment methods for data-limited fisheries datalove zenner datareaver fitur datarobot modelwordcloud Make a word cloud out of text associated with a model datarootsio artyfarty ggplot2 theme + palette presets datascibc cc-journal-club datascibc datathon-2016 datascibc dsbc Miscellaneous helper functions for the datascience breakfast club team datascience122015 runAnalysis Assignment: Getting and Cleaning Data Course Project datasciencecampus employmentProspects Shiny app to display employment information for the UK datasciencecampus govtools An R package to help set up government R packages datasciencecampus kamino DSC visualisation app for the UK fishing industry datasciencecampus zygerria Shiny application for dissemination of employment prospects data on behalf of the Cabinet Office datasciencecologne RCologne This R package provides easy acces to the open data portal of the city of Cologne. All avalilable datasets and resources from the portal can be directly viewed and downloaded in R. datascienceworkshops knitractive A knitr engine to simulate interactive sessions datascienceworkshops tidynaivebayes A tidy implementation of the Naive Bayes classifier datascienceworkshops tmuxr Manage tmux from R datashield Archive datashield ag.dev.cl Amadou Gaye Development Zone for Client Functions datashield ag.dev.sv Amadou Gaye Development Zone for Server Functions datashield dsBase DataSHIELD server site base functions datashield dsBaseClient DataSHIELD client site base functions datashield dsBetaTest Beta versions of new DataSHIELD server functions datashield dsBetaTest5 Repository of functions planned for release in DataSHIELD 5 datashield dsBetaTestClient Beta versions of new DataSHIELD client functions datashield dsBetaTestClient5 Repository of clientside functions planned for release in DataSHIELD 5 datashield dsDanger Functions for development work only. datashield dsDangerClient Client functions for development work only datashield dsGeo datashield dsGraphics DataSHIELD server site functions for graphics datashield dsGraphicsClient DataSHIELD client site functions for graphics datashield dsMeta DataSHIELD server site meta-analyses functions datashield dsModelling Datashield server site functions for statistical modelling datashield dsModellingClient Datashield client site functions for statistical modelling datashield dsMx Datashield package for advanced structural equation modeling (Server) datashield dsMxClient Datashield package for advanced structural equation modeling (Client) datashield dsStats DataSHIELD server site statistical functions datashield dsStatsClient DataSHIELD client site statistical functions datashield dsTutorial A server site package to illustrate the development of a Horizontal DataSHIELD R package datashield dsTutorialClient A client site package to illustrate the development of a Horizontal DataSHIELD R package datashield dsteststats Datashield package for basic statistical tests datashield dsteststatsclient Datashield package for various statistical test (Client side) datashield ji.dev.cl Julia Isaeva Development Zone for Client Functions datashield ji.dev.sv Julia Isaeva Development Zone for Server Functions datashield opal Opal R and Datashield utils datashield opaladmin Opal R and Datashield administration utils datashield testGrid Testing a grid density function for merged datasets datashield testHeatmap dataspy api-docs dataspy data101 r package for data literacy course datastorm-open DependenciesGraphs datastorm-open ROI.plugin.clp ROI.plugin.clp — 'Clp (Coin-or linear programming)' Plugin for the 'R' Optimization Interface datastorm-open rAmCharts API for Amcharts datastorm-open suncalc R package for calculating sun/moon positions and phases, linked to suncalc.js datastorm-open vis3D 3D visualization using vis.js library datastorm-open visNetwork R package, using vis.js library for network visualization datavisyn scatterplot_htmlwidget datavores blogs datavores vgsample A representative sample of video games by first release year. dato-code rpsclient R client library for predictive services datocres coursera-fars daudi phutils Public Health utilities davan690 extractCRresults Base functions for PhD davben arvig An R data package containing georeferenced events of right-wing violence in Germany in 2014 and 2015. davebraze FDB1 A dubious brew of R code. davebraze FDBeye Tools for our eyetracker workflows. davebraze FDButils Utility functions for use in other FDB packages. davebraze FDBwordsets Word and nonword sets culled from literature on naming and lexical decision. davechilders casi Computer Age Statistical Inference: Data and Code Examples davemcg ChromatinCompare Compare and analyze chromatin segmentation bed files (ChromHMM/Segway/etc) davesteps d3circle d3.js circle packing for R davesteps davesteps-hugo davesteps imageFF Functions for fourier filtering of images davesteps insertPipe davesteps opendapR davesteps rWMS davesteps randomFuns davesteps shinyFilters Cascading filter modules for Shiny davetang bedr davetang romim davetgerrard GenomicLayers Simple, sequence-based simulation of epi-genomes. davetgerrard kanute davetgerrard mlPhaser davetgerrard scraCH R functions to scrape and aggregate public data from UK Companies House davetgerrard utilsGerrardDT davharris Heraclitus Compute Streaming (Online) Moments in R davharris Titlebot davharris ais Annealed importance sampling in R davharris communiter davharris fail davharris geovalidation Tools for evaluating model performance in a geographic context davharris megaphone davharris mistnet stochastic neural networks in R davharris mistnet2 Neural Networks with Latent Random Variables in R davharris overcompensation davharris rosalia Exact inference for small binary Markov networks davharris sdmstack david-beauchesne cisl Packaged R functions used for my PhD on cumulative impacts in the St. Lawrence david-borchers LT2D Line transect sampling in two dimensions david-borchers secrgam R package for GAM-based density surface estimation with SECR models david-clifford VPdtw Variable Penalty Dynamic Time Warping david-clifford mzImage Functions for Imaging Mass Spectrometry (IMS) david-clifford regress Gaussian Linear Models with Linear Covariance Structure david-clifford spatialCovariance Computation of Spatial Covariance Matrices for Data on Rectangles david-cortes StratifiedRF Random forest-like model sampling variables in groups david-hammond hammond david-hammond supplydemandcharts Draw standard Economic Supply and Demand Charts david-salgado RepoReadWrite An R package to implement read and write functions and methods with key-value structure (into a microdata repository) david-salgado RepoTime An R package to implement a notation for usual natural time periods (months, terms, semesters, years, ...). david-salgado RepoUtils An R package with a set of tools implementing shell commands to manage Statistics Spain microdata repository david-salgado SelEditErrorMoment An R package to handle and compute conditional error moments under observation-prediction models in the optimization approach to selective editing david-salgado SelEditFunctions An R package with mathematical functions for the optimization approach to selective editing david-salgado SelEditUnitAllocation An R package to allocate a given number of statistical units among diverse population domains david-salgado SelEditUnitPriorit An R package to prioritize units within the optimization approach to selective editing david-salgado StQ An R package to implement a simple key-value structure on data sets david-salgado StQImputation An R package to impute missing values upon data sets with a key-value pair format implemented in the package StQ david-salgado StQPrediction An R package defining classes and methods to be used as wrappers or connectors from a purely scripting level to a low-level implementation to make predictions, especially in the optimization approach to selective editing david-salgado contObsPredModelParam An R package to handle and compute the parameters of a continuous observation-prediction model under the optimization approach to selective editing david-ti wrightmap Wright Map: IRT item-person map with ConQuest integration davidADSP xgboostExplainer An R package that makes xgboost models fully interpretable davidCadillo lazyLoadR Checks yours packages installed R and install its if missing. davidaarmstrong RcmdrPlugin.ISCSS davidaarmstrong SensMiceDA davidaarmstrong bsmds davidaarmstrong damisc Miscellaneous R functions for Presenting and Interpreting Regression Models davidaarmstrong factorplot R software for visualizing pairwise comparisons davidaarmstrong hot.deck davidaknowles eagle Detect environment effects on ASE davidaknowles suez R package for mapping response-expression QTLs davidavdav ROC An R package to compute ROC and DET statistics, and calibrate detection classifiers davidavdav sretools.R An R package to analyse speaker recognition results. davidbody FARSAssignment davidbody earthquakes-package Earthquakes package for Mastering Software Development in R Captone davidcarslaw deweather Remove the influence of meteorology from atmospheric composition data davidcarslaw ggopenair ggplot2 version of openair davidcarslaw openair Tools for air quality data analysis davidcarslaw openairmaps mapping functions to support openair davidcarslaw polarplotr Functions to plot bivariate polar plots davidcarslaw worldmet Easy access to NOAA Integrated Surface Database (ISD) surface meteorological observations davidcearl debarcoder_v2 shiny app for processing barcoded flow cytometry data davidchampredon GI R package to calculate generation interval distributions davidchampredon gitest davidcoffey Diamonds This R package is designed to make extracting, manipulating, and visualizing data from the Diamonds database easier. davidcoffey LymphoSeq An R package for the analysis of high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer. davidcoffey LymphoSeqDB This package provides annotation databases that support the package LymphoSeq. davidcorton archSeries Frequency time-series tools for archaeology davidcorton osteoGIS Plot data on skeletal templates quickly davidcsterratt RImageJROI R package to read ImageJ ROI files davidcsterratt dcsmisc David C Sterratt's Miscellaneous R Toolbox davidcsterratt infenergy Informatics energy R package daviddalpiaz appliedstats Methods of Applied Statistics Course Textbook Repository daviddoret GRCRToolkit daviddwlee84 LinearAlgebra Some Implementation of Linear Argebra davideceolin rcsvw davidgohel R2DOC davidgohel R2DOCX davidgohel ReporteRs ReporteRs is an R package for creating MS Word and MS Powerpoint documents. davidgohel ReporteRsjars External jars required for package ReporteRs davidgohel flextable table farming davidgohel gdtools R utilities for graphical rendering davidgohel ggiraph htmlwidget to make 'ggplot' graphics interactive davidgohel ionicons Ionicons icon pack davidgohel officer :cop: officer: office documents from R davidgohel openxml davidgohel oxbase davidgohel rtable tabular reporting from R with package ReporteRs. davidgohel rvg davidgohel rvgaddin rvg add-in for Rstudio davidhen pisR davidkane9 April11 davidkane9 April12 No description or website provided. davidkane9 baker1 davidkane9 baker2 davidkane9 creditr Credit Default Swaps in R davidkane9 creditrISDA ISDA C-code model and R wrapper davidkane9 kmatching kmatching davidkane9 liam No description or website provided. davidkane9 matchingportfolios matchingportfolios is an R package to generate random, matching portfolios davidkane9 presentation davidkane9 williams Collection of Williams College Data davidkwca inferTPBN davidlamcm Rtoolbox customized functions davidldenton refresh davidloughborough benissmart davidloughborough hello davidluizrusso cats my first R package davidmeza1 MezaEdD My DOctoral Journey davidmeza1 addinsMeza addins I use in my R workflow davidmeza1 doctopics Various examples of topic modeling and other text analysis davidmta cfbscrapR Scrapes ESPN for College Football Data [Still in Development] davidnexer elmnet Regularized and Pruned Extreme Learning Machines in R davidnipperess PDcalc An r package for Phylogenetic Diversity (PD) calculations in ecology, biogeography and conservation biology davidpmills googledrive davidredmond21 tuneR Vibration analysis davidrichardsteinmetz drs Streamline data science operations davidrivera62 Rdemo Shiny Project for Time Series davidromary skillsassessment check up my skill assessement and my career path davidruegamer coinflibs R Package for selective inference in linear models after likelihood- or test-based model selection davidruegamer effortless davids99us anomaly Segmentation and anomaly detection on big data davids99us whywhere An R package for species distribution modeling davidserranoutad sumanumeros davidserranoutad test davidski emoncmsr 🔌Interface library for working with emonCMS energy monitoring data davidski evaluator ⚖Open Source Toolkit for Quantitative Risk Assessment davidski hatetracker ⚖️An R interface for the hatetracker.io project davidski viq-test 🎯🔧 Toolkit for vulnerability prioritization engineering davidthaler PUMSutils Code for working with the PUMS data from the American Community Survey (ACS) davidzarruk Rtauchen davidzarruk fFsdFZ davidzornek Segment_Comparison davidzornek Vendor_Map davismcc cardelino davismcc scater Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version. davismcc scaterPaperExtras davissclark StrippeRs davissclark businessr An R package for common business ops tasks davissclark drivetime R Package for Drive Time Analytics Via Google Maps API davnn stopwords Stopwords ISO collection in R davpinto fastknn Fast k-Nearest Neighbors Classifier for Large Datasets daynefiler brewQuestion daynefiler tcpl GitHub repository for the tcpl R package project. dayvayen commspacetime daz13 nbaAnalytics dazulu4 RLibDistProb Librería R para distribución de probabilidades dazulu4 mpstshiny Proyecto trabajo final MPST en Shiny dazzimonti ConservativeEstimates Computationally efficient method to estimate excursion sets under Gaussian random field priors. Implements an estimator for orthant probabilities of high-dimensional Gaussian vectors. dazzimonti anMC Efficient method to compute orthant probabilities of high-dimensional Gaussian vectors. The method is applied to compute conservative estimates of excursion sets of functions under Gaussian random field priors. db544 varmiss dbGaPdb dbGaPdb dbailleul RClone dbarneche envPred Environmental predictability for time series data dbarneche noaaErddap R interface to three NOAA marine data sources dbdahl bamboo Protein Secondary Structure Prediction Using the Bamboo Method dbdahl commonsMath Executable .jar Files for The Apache Commons Mathematics Library dbdahl shallot Random Partition Distribution Indexed by Pairwise Information dbellettini RobustHoltWinters Sarah Gelper's Holt-Winters variant dbescond Ariane ilo STI data system dbescond Artemis dbescond Rilostat dbescond ilo ilo get data dbescond iloMicro play with LFS micro dbescond ilostat dblodgett-usgs NCDFSG NetCDF Simple Geometries in R dblodgett-usgs NWCEd No description or website provided. dblodgett-usgs awudsDemo A package demonstrating what R can do with AWUDS data. dblodgett-usgs derivatives_runner dblodgett-usgs hydroRsb A wrapper for sbtools to help archive and share hydro model data on ScienceBase. dbmovMFs DirecCoclus dbmovMFs test dbnomics rdbnomics Access DBnomics data series from R. dbolotov anode dbottomly HitWalker dbottomly oligoMask Tools for masking out problematic Affymetrix probes using VCF files and the oligo Bioconductor package dbottomly plethy Analysis of whole body plethysmography data in R dbottomly plethyData Experimental data for the plethy package dbottomly pod Tools for patient-specific expression outlier detection dbottomly poplite Tools for Simplifying the Population and Querying of SQLite Databases dbranquinho zipf Classification and clustering texts dcalderon rolypoly Method for identifying trait-relevant gene annotations from GWAS summary statistics. dcangst batPicClassifier look through pictures and note bat species dcangst batplotr analyze and visualize batscope data dcangst fitr simple growth rate estimation package for R dcbdan s525 dcdillon RcppHoney A more fluid form of sugar. dcgerard UltimateDeconvolution An R package for simple EM algorithms to solve the deconvoultion problem in Gaussian mixtures. dcgerard gerard Small utility functions. dcgerard hose Calculate Higher-order Spectral Estimators dcgerard sabotash A package that sabotages ASH. dcgerard seqgendiff Sequence Generation for Differential Expression Analysis dcgerard stramash ASH but using a mixture likelihood. dcgerard succotashr Implement SUCCOTASH for accounting for hidden variables in large scale gene expression studies. dcgerard tensr Covariance Inference and Decompositions for Tensor Datasets dcgerard unleash UNimodally Leveraging Empirical-null with Adaptive SHrinkage dcgerard updog Using Parental Data for Offspring Genotyping dcgerard vicar Various Ideas for Confounder Adjustment in Regression dchen49 GA Variable Selection via Genetic Algorithm dchiu911 bbref NBA statistical data scraped from basketball-reference.com dchiu911 gameday gameday package from STAT 547M dchiu911 naim Numerical Analysis Iterative Methods dchiu911 nanostringr No description or website provided. dchudz predcomps An R package for extracting understanding from predictive models dchudz reddit-data dcmuller ncctools R tools for creating and analysing incidence density sampled nested case-control data dcomtois Boggler Generate solutions and play Boggle game (in French & English) dcomtois RStudioAddInsDC dcomtois sortLines Adds "Sort Selected Lines" to RStudio's Addins menu dcomtois summarytools R Package for quickly and neatly summarizing vectors and dataframes dcries bhd ddalthorp GenEst R package development for a generalized mortality estimator ddarmon spenra ddavid-evdy miscR dddbbb erquaker NOAA's Significant earthquakes exploration package dddbbb fars Building R package dddd1007 PsychoRLabnirs A toolbox for Labnirs. dddd1007 TJNU.fnirslab A R package of fnirs lab in Tianjin Normal University. ddediu AdhereR Computation of adherence to medications from Electronic Healthcare Data in R ddiez biodevtools Support classes to use bioinformatic tools in R using Docker ddiez chaos ddiez hmmertools Run HMMER from R using Docker ddiez immgen.db ddiez maze A Simple Maze Plotting Tool ddiez memetools Run MEME from R using Docker ddiez motiftools Some tools for the analysis of motifs ddiez ngstools Miscellaneous tools for the analysis of NGS data ddiez q3tools Custom functions for the analysis of omics data ddiez rdcq ddiez simtrn ddionrails r2ddi Using R to extract DDI from various data formats ddionrails soepR ddlee96 mcmi Monte Carlo Method for Multivariable Integration ddsbook book ddsbook ripal The OTHER Password Dump Analyzer (in R) ddsjoberg sjofun Collection of functions I've written.... ddsjoberg sjosmooth deWitLab peakC Peak calling for 4C data deanmarchiori UpliftTestR UpliftTestR is a package that forms a collection of baysian and non parametric tests of proportions deanmarchiori dataexplorer dataexplorer is a package that acts as a convenience wrapper for my most commonly used data summarisation tools deanmarchiori gofish R package for data standardisation in marine science deanmarchiori qPlanR qPlanR is a package to calculate queueing probability and staffing levels using Erlang C deardooley agave-rlang-sdk debajyoti7 coursera_Rpackage_final Repository towards final requirement for coursera course debajyoti7 featheriseR convert files to feather format debajyoti7 mpreg pb motor regexes debangs RSAGA RSAGA Package Code debarros dbTools My personal tools debarros rrttReportBuilder debinqiu aTSA Alternative time series analysis debinqiu grpss Grouped variable screening and selection debinqiu rmaf A refined moving average filter. debinqiu snpar Supplementary nonparametric statistical methods debruine frlgmm Face Research Lab Geometric Morphometric Functions debruine markr R package for marking sheets decision-sciences cds_dospert_package decisionpatterns S4Data S4 classes of base R data classes: vector, list, data.frame, data.table decisionpatterns backpipe Backward (right-to-left) Pipe Operator decisionpatterns caret.tools Utilities for working with caret models decisionpatterns catcont Check, Test, Determine and Investigate Whether a Vector is Categorical or Continuous decisionpatterns date.reader Extends type.convert and read.table to automatically detect and coerce date fields to POSIX format. decisionpatterns dup.actions Function for handling duplicate values in data decisionpatterns formula.tools Utilities for working with formulas, expressions, calls and other R objects decisionpatterns lettercase Utilities for turning characters into various cases: camelCase, Title Case, lower case, upper case, etc. decisionpatterns monotone Check/verify/confirm the monotonicity properties of a vector decisionpatterns na.actions Functions for handling NA values decisionpatterns operator.tools Utilities for working with R's operators decisionpatterns optigrab Commandline parsing for an R World decisionpatterns options Improvements to R's global options mechanism decisionpatterns r-dummies Create dummy/indicator variables flexibly and efficiently decisionpatterns r-hash Full feature implementation of hash/associated arrays/dictionaries in R decisionpatterns searchable Make R objects more searchable by matching names based on case (in)sensitivity, regular expressions, etc. decisionpatterns sticky Persist attributes through data manipulations decisionpatterns whisker.tools Extensions to the R whisker package decryptr captchaReceita Quebra CAPTCHA da receita usando imagem. EXPERIMENTAL usando tensorflow. decryptr captchaReceitaAudio Captcha da Receita, mas usando o áudio no lugar de imagens decryptr captchaReceitaData Repositório de dados de imgs e audios brutos utilizados nos pacotes do tipo captchaReceita decryptr captchaSajAudio Quebra captcha do sistema e-SAJ por áudio decryptr captchaSajData Captchas baixados dos tribunais que posuem o sistem eSaj decryptr captchaTJMGAudio Quebra captcha do TJMG por áudio decryptr captchaTRT Quabra captchas usados nas pesquisas de processos judiciais eletrônicos dos TRTs decryptr decryptr An extensible API for breaking captchas decryptr decryptrAPI OpenCPU api to break some captchas. decryptr decryptrModels decryptr models repository deepankarSrigyan DPOWER.1 Run a very specific report deepankardatta AppleHealthAnalysis A R package to analyse exported Apple Health XML data deepankardatta BlandrJamovi deepankardatta MortgageCalculator Functions to assist in analysing mortgage interest rates deepankardatta blandr blandr: a Bland-Altman Method Comparison package for R deepayan lattice Trellis Graphics for R deepfriar ggpride2 A lot of trouble to make a simple observation about ggplot2 default colors defcom74 R-MQS defcon20 rentalAnalysis definitelysean sgaphd Sean Gets A PhD: Silly Utility Functions deformetrics deformetrics An R package providing statistical methods related to Geometric Morphometrics dehowell kaggle-kobe-bryant Analysis and prediction code for Kaggle Kobe Bryant challenge. delferts Dendro delmalt gale No description or website provided. delmalt galeshapley deloitte-solvas Solvas-Capital-R-Utility Utility routines for database access delta-rho trelliscope Detailed Visualization of Large Complex Data in R delta1epsilon BoxPacking R package for solving three-dimensional bin packing problem delta1epsilon logtime R package for logging and timing deman007 aTSA Alternative time series analysis deman007 grpss Grouped variable screening and selection deman007 rmaf A refined moving average filter. demuellae ChrAccR demuellae muRtools Fabian's R tools demuellae rnbeads_test dengkuistat MSVA A Novel Approach to Removing Unwanted Variation in Metabolomics Data Based on Surrogate Variable Analysis denis-arnold TreeBUGS denisStukal Rvk denisagniel smrtr Sparse multiple regulation testing denisagniel tcgsaseq tcgsaseq: Time-course gene set analysis for RNA-seq data dennismalandro inventory inventory dennismalandro remisc Miscellaneous R helper functions dennismalandro tostpower Power/sample-size calculations for equivalence/non-inferiority hypothesis testing dennisprangle abctools R package providing tools for approximate Bayesian computation, including summary statistic selection and assessing coverage dennisprangle gk R package for the g-and-k distribution dennisprangle lazyABCexample R package implementing lazy ABC paper example dennisprangle rainfallABC ABC analysis of rainfall data in R denrou budgetmanager Manage your budget with R denrou rbudget R package for managing personnal account departmentfortransport webTRISr A wrapper around WebTRIS Traffic Flow API from Highways England deployr deployrUtils Develop Portable R Code for Use with DeployR derek-corcoran-barrios DiversityOccu derek-corcoran-barrios NetworkExtintion derek-corcoran-barrios RtoAmpl RtoAmpl derek-corcoran-barrios SpatialNBA derek-corcoran-barrios Toritos derek-damron budget Easy budgeting in R derek-damron budgetr Easy budgeting in R derek-damron transform Easy variable transformations in R derek-damron transformr Easy variable transformations in R derekcho foofactors Makes factors less annoying dereklegenzoff cognitiver dereklh24 RSMC2 dereksonderegger NPS dereksonderegger NPSData dereksonderegger NPS_Data No description or website provided. dereksonderegger OccupancyModels A package for analyzing Occupancy data dereksonderegger STA578 Code for STA 578 - Statistical Computing dereksonderegger Simulations Code for facilitating large simulations dereksonderegger Simulations2 Run Simulations on Monsoon dereksonderegger dsData Data sets for teaching dereksonderegger fiducialSplines derele MultiAmplicon Metabarcoding Analysis for Multi-Amplicon Projects dermcnor Intro-2-r dermcnor transformr An R package for automatic feature generation. derrickturk aRpsDCA R package for Arps decline curve analysis. deruncie AtFloweringModel deruncie PLS205_package package of R tools for PLS205 deruncie QuickShiny deruncie temp2 desautm linalg Un ensemble de commandes en Algèbre Linéaire et Géométrie Vectorielle en langage `R` desautm xaringan descostesn ChIPSeqSpike ChIP-Seq data scaling according to spike-in control desmarais-lab NetworkInference R implementation to the netinf algorithm. Infers the most likely diffusion network from a set of events despresT replicate.patterns despresT replicated.pattern No description or website provided. desstatsutiles prepare.data desultor workout detroyejr giantbomb Provides functions for accessing the GiantBomb api. detroyejr igdb Provides functions for accessing the internet game database api. dev01120314 BoxToolsCepoi BoxToolsCepoi devSJR PCRedux quantitative PCR machine learning helper tool devSJR mdcr modest data crunsheR devSJR micR image analysis devanshagr CVLinearModel CVLinearModel devanshagr CrossValidation devanshagr PermutationTestSecond devillemereuil QGglmm Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance. devinrkeane sigma401k version of sigma401k R package for website and OpenCPU API devoges AddInfo devoges dvRutilities dewittpe cpr Control Polygon Reduction: Methods for quick and efficient placement of internal knots for B-splines and tensor products of B-splines. dewittpe pstools Propensity Score Analysis Tools dewittpe qwraps Wrapper functions for producing base R plots using ggplot2. Included functions are qacf(), qroc(), qsurvplot(), with more to come. There are several other wrapper functions in this package which have been useful for me when working on data analysis reports. dewittpe qwraps2 An updated version of qwraps with a focus on flexibility and general purpose. These functions are helpful for extracting and formatting results from R into .Rnw or .Rmd files. Additional functions for routine work such as extracting results from regression models or finding sensitivity and specificity. dewittpe sccm Schwarz-Christoffel Conformal Mapping dextercowley FJ-Stuff deyandyankov rdfdiff Computes data differences between two data frames with the same structure deybvagm amnfis deybvagm amnfisClassifier amnfisClassifier dfalbel PTtextmining Pacote em R para text mining fácil em português. dfalbel balancetesPrefeituraSP Balancetes da Prefeitura de São Paulo dfalbel bc Binary Classification Functions dfalbel bubblewordchart Plot Word Frequencies and Sentiment. dfalbel budgetSP Obter dados do serviço de Transparência da Fazenda SP que tem por objetivo, disponibilizar dados sobre o Orçamento do Estado de São Paulo dfalbel capsnet CapsNet implementation in keras for R dfalbel captchaReceita2 Quebrando o captcha da Receita Federal - v2 dfalbel densenet densenet for R dfalbel diag dfalbel editor Data Editor Shiny Module dfalbel folhar Webscrapping do Portal da Folha de São Paulo dfalbel ifelser R package to make ifelse statements easier dfalbel jupiter pacote para acessar o jupiter web dfalbel keras dfalbel mercury R Connection to the Mercury Web Parser API dfalbel modules My Shiny Modules dfalbel mymlr My extentions to mlr package dfalbel paletaCores dfalbel ptstem Stemming Algorithms for the Portuguese Language dfalbel ptwikiwords Words used in Portuguese Wikipedia dfalbel raqui Interface no R para obter dados relativamente estruturados do Reclame Aqui dfalbel rbulamed Baixar bula de medicamentos usando o R dfalbel rfolha Ferramenta para baixar notícias do site da Folha de SP dfalbel rimdb Interface no R para obter dados relativamente estruturados do IMDB (Internet Movie Database) dfalbel rsk Trying to use scikit-learn from R dfalbel rslp A Stemming Algorithm for the Portuguese Language dfalbel rveja Ferramenta para baixar notícias do site da revista Veja dfalbel spmultas dfalster dataMashR Code for merging data from different studies in a transparent way dfalster hierarchical_model dfalster rDependencyGraph dfalster smatr3 an R package for estimation and inference about allometric lines dfalster standViz Make 3D plots of individual trees and stands using openGL dfarnand DJFFunctions A set of functions I wrote for my own projects, packaged to make them more conveniently available. dfci-cccb injectoR Dependency injection for R dfci-cccb raven R versioned package environment dfeehan dhstools tools for analyzing Demographic and Health Survey (DHS) data in R dfeehan mortfit dfeehan networkreporting network reporting methods in R dfeehan nrsimulatr network reporting simulations dfeehan rwtheme plot theme for projects that use the Rwanda survey dfeehan surveybootstrap bootstrap methods for survey data in R dfrail24 pkg dfrossoni geotoolsR Tools to Improve the Use of Geostatistic dfsnow clt An R package for demonstrating the central limit theorem dgabbe btpress coming soon... dgabbe dgutil Personal R utilities dgabbe dgutils R utilities collection to improve productivity and workflow. dgabbe wdprompt R console prompt displays your working directory as getwd() would return. dgeller-OUHSC rpkg_skeleton R package skeleton for SGUC dgerlanc renplus Enplus Advisors R Utilities dgiguer omicplotR R package for omicplotR dgiguer omicplotR_pkg dgkf ggpackets Cleaner composition of ggplot layers dgl5gw geocompr dgolicher crickdata dgolicher cricpac dgopstein CorrBinPaired Various statistical methods for analyzing correlated matched pair data dgopstein clust.bin.pair Various statistical methods for analyzing correlated matched pair data dgrapov CIRgetR R interface for chemical identifier translation through the Chemical Identifier Resolver (CIR). dgrapov CTSgetR R interface to Chemical Translation Service (CTS) dgrapov devium Dynamic Multivariate Data Analysis and Visualization Platform dgrapov metabomapr R package for MetaMapR (http://dgrapov.github.io/MetaMapR/) dgrapov networkly network visualization using plotly dgrapov pyThoR dgromer apa Format output of statistical tests in R according to APA guidelines dgromer movhm dgromer phyr6 dgromer psymisc Miscellaneous functions for psychologists dgrtwo GSEAMA Gene Set Enrichment Analysis Made Awesome dgrtwo adblockr Block ads from the monetizr package dgrtwo broom Convert statistical analysis objects from R into tidy format dgrtwo drlib Personal R package dgrtwo ebbinom Empirical Bayes binomial estimation dgrtwo ebbr Empirical Bayes binomial estimation dgrtwo fuzzyjoin Join tables together on inexact matching dgrtwo gganimate Create easy animations with ggplot2 dgrtwo ggfreehand Add freehand circles to ggplot2 graphs dgrtwo gutenbergr Search and download public domain texts from Project Gutenberg dgrtwo monetizr Make money from your open source packages dgrtwo nofalThesis Shared thesis functions dgrtwo parsetidy Tidy an R parse tree into a data frame dgrtwo rgallery Build a gallery of R snippets dgrtwo rpanama The Panama Papers offshore leaks database in R dgrtwo rparse Parse API Client for R dgrtwo snippr Manage, share, and install RStudio code snippets dgrtwo splittestr Functions for Bayesian A/B Testing Post dgrtwo stackr R package for connecting to the Stack Exchange API dgrtwo stacksurveyr Stack Overflow 2016 Developer Survey Results dgrtwo testtravis test dgrtwo tracestack Search Stack Overflow for your most recent error message dgrtwo unvotes United Nations General Assembly Voting Data dgrtwo widyr Widen, process, and re-tidy a dataset dgrun FateID dhaine episensr Basic sensitivity analysis of epidemiological results in R dhaine misclass Sampling Strategies to Control Misclassification Bias in Longitudinal Udder Health Studies dhammarstrom effectsizeR dhammarstrom exPhysR code for analyzing ex phys data dhammarstrom generefer dhammarstrom my_ggthemes Themes for ggplot2 dhammarstrom qpcr.data functions for reading qpcr data dhammarstrom qpcrpal dhammarstrom usefulR My useful functions for R dhandoko5 odds dhandoko5 restaurantbot dhandoko5 stocksentiment dhertle RTutorTaxationScandinavia dhiegobalthazarsousa cv4ct dhimmel hetior R tools for machine learning on hetnets dholtschlag-usgs buildRpackage1 Trial build of R package for course exercise. diagdavenport cmpprocess Source package for cmpprocess diagdavenport multicmp Source code for multicmp R package dichika GW dichika NHKG dichika Nippn dichika batade batade-package dichika benri dichika caption dichika connpass dichika dmm dichika faceplusplus dichika firstdate dichika forMe dichika hatenab get information from hatena bookmark API dichika hcc dichika howaboutyou dichika jaguchi dichika memo dichika movie dichika myFitbit dichika myJawbone dichika niconico dichika pings pings for all %.% user dichika pixiv dichika rDatumBox dichika runkeeper dichika scrapeGPS dichika sinchokur 進捗を支える技術 dichika slideshare dichika snp dichika speakerdeck dichika sushi dichika timecard dichika umai dichika voice dichika vreco dichika yeah sounds "yeah" dichika yeahradio dichika yo dichika yoshio dicook gretchenalbrecht dicook nullabor dicook phyViz dide-tools context dide-tools didehpc :cloud::computer::cloud: Support for the DIDE cluster dide-tools didewin :cloud::computer::cloud: Support for the DIDE windows cluster dide-tools encryptr http://dide-tools.github.io/encryptr/ dide-tools kitten didiergirard CGEMEV alternative to maximum likelihood for fitting Matern covariances diegogarcilazo Rbio diegogarcilazo Rcanreg5 diegogarcilazo biotools diegogarcilazo deistools R tools for Biostatistic datasets developed by DEIS. diegogarcilazo myutilities diegogarcilazo pgr diegojedwards functions_app Functions to use in App diegomattozo categorization categorization methods for continuous variables in binary regression models diegomattozo multdiscretization A Multivariate Discretization Algorithm. diegovalle aire.zmvm An R package to download Mexico City air pollution data diegovalle drug-war-related-homicides diegovalle mxmaps An R package to create Mexico choropleths diegovalle mxmapsData diegovalle mxmortalitydb A data only R package containing all injury intent deaths registered in Mexico from 2004 to 2015 diengiau rifin R in Finance dieterich-lab CellPlot R package for the integrated visualisation of functional enrichment and expression data. dieterich-lab CircTest CircRNA testing and ploting R package digEmAll bsearchtools Binary search tools package for R digiYozhik msc_thesis digital-dharma RStudioAddIns RStudio AddIns dilernia AndrewsPack Practice package for making an R package available on GitHub. dill Distance2 New version of the Distance R package. dill RXMPP XMPP library for R dill beyonce 👑 🐝 📊 Beyoncé colour palettes for R dill dillhandy Handy utils for me... dill distancebugs dill emoGG :chart_with_upwards_trend::heart_eyes_cat: Emoji in ggplot2 :heart_eyes_cat::chart_with_upwards_trend: dill horse 🐴 an R package for generating Tweets (from Tweets) using Markov chains dill ltdesigntester Testing line transect designs dill mmds Mixture model distance sampling - click downloads for the latest release, or just clone the repo using the url below. More information will be available on the wiki. dill msg Multidimensional Scaling for Generalized additive models. See wiki for examples. dill poridge Principal co-Ordinate RIDGE regression dill readGPS R package to read and plot GPS data dill readdst Convert Distance for Windows projects into R code/data dill traceRy a tracery implementation in R dill wisp A version of WiSP that works on Mac/Linux/modern versions of R diluises neutRino Neutrino Physics Analysis with R dimagor CanineMammaryTumor dimagor railActive Dashboard forecasting NJTransit Rail Delays dimagor socraticswirlInstructor dimalik EntropyEstimator Hrate package for R dimalik Hrate Hrate package for R dimalvov scores No description or website provided. dimalvov scrES No description or website provided. dimalvov vienna dincerti cea dincerti learnMCMC dinilu EPDr R package to connect with the European Pollen Database (EPD), extract data, and operate with the data dinilu paleoCLMs-package R package for the paleoCLMs project dinithi hellodev test package dinmatias reconproGS diogomarques rrating Random generation of approximately normally distributed responses to Likert-type rating items in surveys. diogosbr modelos diogosbr spfilt diogosmendonca ApacheLogProcessor R Package to Process the Apache Web Server Log Combined Files diogro ratones Code and data for "The Evolution of Phenotypic Integration: How directional selection reshapes covariation in mice" dipenps dsancodeR dipenps rnits R/Bioconductor package for normalization and differential expression inference in time series gene expression microarray data dipetkov actigraph.sleepr Detect periods of sleep and non-wear from ActiGraph data dipetkov reemsplots2 diptavo MultiSKAT MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests. diptosarkar SpatNet Metrics and Visualizations for Spatial Social Networks dirkduellmann SsHDFS access HDFS via ssh pipes dirkschumacher RBerlinData Open data for Berlin in R [project is abandoned] dirkschumacher ROI.plugin.cbc ROI plugin for COIN-OR branch and cut (CBC) solver dirkschumacher duckduckr 🦆🦆🚶 DuckDuckGo's Instant Answer API for R dirkschumacher etherscanr Etherscan.io api client for R (work in progress) dirkschumacher geopattern HTML widget for the geopattern javascript library dirkschumacher llr Lisp-like-R: A lisp that compiles to R dirkschumacher ompr R package to model Mixed Integer Linear Programs dirkschumacher ompr.glpk dirkschumacher ompr.roi ROI bindings for OMPR dirkschumacher ompr.symphony dirkschumacher rcbc COIN-OR branch and cut (CBC) bindings for R dirkschumacher rhxl Humanitarian Exchange Language (HXL standard) in R (work in progress) dirkschumacher romp R package to model Mixed Integer Linear Programs dirkschumacher rpicosat PicoSAT bindings for R dirkschumacher surveillance-fork A fork of Michael Höhle's surveillance package on r-forge dirkschumacher thankr Find out who maintains the R packages you use and say 'thank you' dirkschumacher transduceR transducers in R dirkschumacher votingpower.r Measure voting power in R dirmeier codacy-lintr dirmeier datastructures Implementation of core data structures for R. dirmeier diffusr Network diffusion algorithms in R. dirmeier enviRonment :neckbeard: An R environment. dirmeier gpR Gaussian processes for machine learning in R and FORTRAN. dirmeier gpls Generalized partial least squares in R. dirmeier knockout Analysis of high-throughput gene perturbation screens in R. dirmeier rda Regularized LDA and FDA for dimension reduction or classification in R. dirmeier submitr Submit jobs to a grid engine in R. dirtytrashgirl unofficial-tinycards-api This is an unofficial R package to access the Tinycards API. It was created because their interface for creating and maintaining decks is trash. dis-organization depsf dis-organization dpp dplyr for paired calculations dis-organization ncdb dis-organization repomania Replaced by AustralianAntarcticDataCentre/raadsync dis-organization sp_dplyrexpt sp fork for use with dplyr dissipative recline A package written for my PhD thesis research. The one can perform reconstruction of the climatic niche of a species using this. Documentation not finished yet. diyanr RPackageAssignment djaiswal BioCroRegional Functions for visualization of regional simulations using BioCro djaiswal TaskScheduler djaiswal cv djaiswal my-repositories djhocking RTemplates Repo for my custom Rmd templates including a course syllabus skeleton djhocking utilitiesR R package of frequently used utility functions djvanderlaan LaF An R package for fast access to large ASCII files djvanderlaan datapackage Reading and writing datapackages from R djvanderlaan ldat (Statistical) function for working with lvec objects djvanderlaan lvec Handling larger than memory vectors in R - core package djvanderlaan lvec_stats (Statistical) function for working with lvec objects djvanderlaan reclin Probabilistic Record Linkage in R dkahle algstat An R package for algebraic statistics. dkahle bayesRates dkahle betalu A light weight package for the (d/p/q/r)betalu functions for the beta distribution with support [l,u] in R dkahle chi A light weight package for the (d/p/q/r)chi functions for the chi distribution in R dkahle dirichlet A light weight package for the (d/r)dirichlet functions for the Dirichlet distribution in R dkahle ggmap a package for plotting maps in R with ggplot2 dkahle invgamma A light weight package for the (d/p/q/r)invgamma functions for the inverse gamma distribution in R dkahle latter Connections from R to LattE and 4ti2. dkahle mpoly Symbolic computing with multivariate polynomials in R dkahle poisDoubleSamp dkahle tropical Tropical Geometry in R dkainer BLUPGA R implementation of BLUP|GA genomic selection dkaschek blotIt2 dkaschek cOde Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages dkaschek dMod Dynamic modeling and parameter estimation in R dkidney gibbonsecr SECR analysis for acoustic gibbon surveys dkilfoyle dkjustgage htmlwidget for justgage dkilfoyle rpivotGadget rpivotTable as an RStudio add-in gadget dkilfoyle timelinevis R HTMLWidget for the vis.js timeline dkneis diatools Utilities for diagenetic modeling (R package) dkneis knut A selection of R functions (not being of wider public interest) dkneis mcu Model calibration utilities (R-package) dkneis rodeo R-package to handle ODE-based models as objects dkneis rodeoApp Interfaces to rodeo-based models dkneis rodeoGUI Generic GUI for rodeo-based, zero-dimensional models dkoban SNAToolKit dkolobok confest dkrozelle s3r Life is short, you shouldn't need to type so much when interacting with s3 buckets dkrozelle toolboxR A collection of convenience wrappers and simple functions for bioinformatics, clinical/biological data curation, and fileIO. dkurtoic addVariables dkurtoic fars dlandy WarpedBayes dlandy demographicModeling dlastor FinMarkets dlebauer betydb-tools dlebauer climate-utils code used for exploring / transforming climate data dlebauer cpcRain R code to download and analyze global precipitation data from the Climate Prediction Center (CPC) dlebauer foo dlebauer ghgvcR R implementation of the Greenhouse Gas Value Calculator dlebauer lebauer2010ldr data and code used in manuscript dlebauer ncconv dlebauer pecan-priors demonstration of methods used to elicit priors from data and expert knowledge dlebauer r2bugs dlebauer rhwsd An R package for using the Harmonized World Soil Database (HWSD) dlebauer ripedata dlebauer swc-workshop-template dleelab KompUtils KOMP util functions dleelab iasvaExamples dleelab pvca dlemas microbes tools for analyzing microbiome and metabolomics data dlemas mintR Tools for analyzing financial data from mint.com dleutnant influxdbr R Interface for InfluxDB dleutnant m181 Timeseries Data Validation according to the DWA-M 181 dleutnant swmmr R Interface for US EPA's SWMM dleutnant tsconvert R library to read and convert time series data of sensors and data loggers dleutnant tstpr R library for tstp (time series transfer protocol) dlill conveniencefunctions Some convenience functions for R dlindholm convertICD convertICD package dlindholm doctoR Tools for medical research - The doctoR package dlindholm oboe an R package for working with OBO databases dlinzer poLCA Polytomous Variable Latent Class Analysis (R package) dloewe dukeR Tools for analysing Duke University Hospital data dloewenstein dukeR Tools for analysing Duke University Hospital data dm13450 dirichletprocess Build dirichletprocess objects for data analysis dm89 jsRhelper To help interface R from JS dmanescu enrichment-test R package for a length-aware enrichment test dmarchiori UpliftTestR dmarchiori qPlanR dmarcondes rugbypackage Rugby statistics Package for R dmbates RePsychLing Data sets from subject/item type studies in Psychology and Linguistics dmbeskow twcol dmcartor MDMR Multivariate distance matrix regression in R dmcartor MVLM R package to compute analytic p-values for linear models with multivariate outcomes dmcartor dbmcols Simple package that contains color palettes that I typically use to visualize data in R dmcartor mdmr MDMR dmendres farsAssignment Coursera R Package course project dmendres testRpackage Test package for R Packages Coursera Course dmenne breathtestcore Core function for reading and processing of 13C breath test data for gastric emptying dmenne breathtestshiny Web frontend for dmenne/breathtestcore and dmenne/breathteststan dmenne bugsexamples WINBUGS examples with documentation as vignettes. See also https://github.com/stan-dev/example-models dmenne d13cbreath R Package: Reads and evaluates gastric emptying 13C breath test data dmenne dknitprintr Custom output from knitr/rmarkdown for lme (and more, maybe) dmenne dlatex R package: Dieter Menne's latex related functions dmenne dmisc2 R package: Dieter Menne's misc functions dmenne dmri3d R package: Read MATLAB-Format data from mri3d.exe (University Hospital of Zürich, USZ) dmenne dmrixml R package: University Hospital of Zuerich MRI-XML support and database functions dmenne gastempt A package and a Shiny web application to create simulated gastric emptying data, and to analyze experimental gastric emptying data using population fit with R and package nlme. dmenne gastrobase R-package: Runs 13C analysis as a shiny application using D13CBreath dmenne rstanyaml Minimal R test package with vignette running a stan build dmenne teststan Minimal rstan-based package with test example dmgatti DOQTL QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses) dmhall2 botlio-r dmhall2 opencpu.bondlab dmitrienka rmatch R code for crystal structure comparison dmkaplan2000 ConnMatTools An R package for working with connectivity dmkaplan2000 ConnMatTools.git An R package for working with connectivity dmkaplan2000 RH2 R package containing DBI/RJDBC interface to h2 database dmkaplan2000 RH2.git R package containing DBI/RJDBC interface to h2 database dmkaplan2000 Rxt R package for analyzing the H2 database containing the NXT blockchain dmontaner TiddlyWikiR An R library to generate wiki reports in TiddlyWiki format. dmontaner mdgsa Multi Dimensional Gene Set Analysis dmontaner mirbaseID An R library to convert identifiers between different versions of miRBase dmosquerag Rdemovac-o Aquí va la descripción dmpe ElsevieR Abandoned 😢 dmpe SlideShaRe slideshare client for R language dmpe WufooR API Wrapper for Wufoo.com dmpe rbitly R package for Bit.ly URL Service - the RBitly Shorten, expand and acquire statistics for your bit.ly links dmpe urlshorteneR R package for many URL shortening service 📢 Shorten, expand and acquire statistics for your links dmpe wufoor API Wrapper for Wufoo.com dmuijen mapfuser R package for consensus map construction and marey maps dmurdoch JSDocPlugin An RStudio plugin to dmurdoch SSCcompetition An R package to support organization of the SSC student research prize competition dmurdoch venus Apply Earth Model to Nuisance Variables dmwelgus MapChi dmwelgus experimentalML dnacombo MaxPac dnbarron tidyclm dnbucklin pgis2r Functions for loading spatial tables from PostGIS/PostgreSQL databases in R. dncnbrn EmsiR A set of tools to allow for querying and pulling data from the Emsi Episteme API from within R. dnegrey blogr Lightweight blog framework using R markdown dnegrey miscTools R package with miscellaneous tools dnegrey spork R package with a hodgepodge of useful of things dnspangler test testing dnusinow BaseXClient dnusinow cRomppass Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence dnusinow snipeR Software for Network Inference of Proteomics Experiments dnzmarcio EWOC Implementation of phase I clinical trial design Escalation With Overdose Control dnzmarcio binreg binreg is a R-package design to perform the Bayesian binary regression analysis. dnzmarcio ewoc Escalation With Overdose Control dnzmarcio ntimes # ntimes Set of basic tools and wrappers to perform statistical analysis. dobriban pweight P-value Weighting R Package docopt docopt.R Command-line interface description language for R (http:docopt.org) docsteveharris ccfun docsteveharris cleanEHRtools docsteveharris collab-rrt dokato todor TODOr doktorschiwago Rllvm2 fork of Rllvm on LLVM 3.7 and R 3.2 doktorschiwago kwai dolatamat TrafficOpsScenarios traffic ops scenarios dolchan ssgsrt Perform single sample gene set rank test dominikkirchhoff CCKriging R package for fitting extended Kriging models to mixed continuous and categorical inputs dominikl rOMERO OMERO R Gateway dominikpeter rsenal dominikpeter tidyforecast dominiqueemmanuel adjustement dominiqueemmanuel graphpdd dominiqueemmanuel verbatim.utils dominoFire billboardr Information from Billboard in a friendly R interface domjarkey relatable Functions for Mapping Key-Value Pairs, Many-to-Many, One-to-Many, and Many-to-One Relations domoinc-r DomoR domwoolf picarro Contains functions for processing and analyzing picarro respiration data donaldRwilliams litterEffects donaldmusgrove copCS The copCS R package donaldmusgrove gibbS A Gibb Sampler donaldmusgrove ngspatial The ngspatial R package donboyd5 BEAData NIPA and regional data from BEA, updated periodically donboyd5 apitools Easy tools for working with the BEA and Census APIs donboyd5 bdata Data donboyd5 btools Tools I use donboyd5 decrements Decrement tables for public pension plan analysis donboyd5 fof Flow of Funds Z1 data from the Federal Reserve Board donboyd5 pdata Data for analysis of public pension plans donboyd5 pp.prototypes Demographic data for public pension plan prototypes donboyd5 ptools Pension simulation tools dongh11 MLSBM multi-layer stochastic block models dongh11 MultiNetSurv An trial R package for multilayer network surveillance dongjunchung GGPA graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture dongjunchung GPA GPA: Genetic analysis incorporating Pleiotropy and Annotation dongjunchung PICS PICS: Pathway-Guided Identification of Cancer Subgroups dongjunchung bayesGO bayesGO: Bayesian ontology fingerprint, a statistical framework for biomedical literature mining dongjunchung dpeak High resolution identification of protein binding sites using PET and SET ChIP-Seq and ChIP-exo data dongjunchung mosaics MOdel-based one and two Sample Analysis and Inference for ChIP-Seq dongjunchung pathclust pathclust: Pathway-guided identification of cancer subtypes dongminjung PPInfer dongminjung gsean dongringo Rpackage dongringo zillow dongzhuoer bisecpp General-purpose Optimization using enhanced bisection method dongzhuoer ggcook Helper functions in "R Graphics Cookbook" dongzhuoer mcapomorphy Molecular Classfication based on amino acid apomorphy dongzhuoer pgmcs Population Genetics Monte Carlo Simulation dongzhuoer rget fetch contents of a website donkang75 MetaPCA MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data donkang75 MetaQC MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis donkeyshot phybreak Outbreak reconstruction with sequence data doomlab MOTE Magnitude of the Effect - An Effect Size and CI calculator dorianps LESYMAP Lesion to Symptom Mapping in R dorks81 MFP dosorio G2F And R package to find and fill gaps in metabolic reconstructions dosorio Peptides An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences. dosorio ccCINTROP A set of functions to calculate and plot the CC50 dosorio convert2sybil NOT TESTED: in-house code to convert the HMR 2.0 and RECON2 reconstructions to the sybil valid syntax dosorio ex2flux An R package to convert expression data to FBA fluxes dosorio minval An R package for MINimal VALidation of stoichiometric reactions dosreislab mcmc3r mcmc3r: an R package for MCMCTree dossinf crosstracker Package designed to track SGA crosses douglasgscofield dispersalDiversity Analyse individual and genetic diversity of dispersal processes in biological populations douglasgscofield fastrank R package providing fast ranking for integer and numeric vectors, an alternative to calling .Internal(rank(...)) douglasgscofield nestedRanksTest R package providing a mixed-model Mann-Whitney-Wilcoxon test with nested ranks douglasgscofield readGenalex R package for reading GenAlEx-format genotype files dougmet bioscrapr R package scrape bioconductor data dougmet c4dougbot2000 The most feared c4 bot in the known universe dougmet holidaycalc Within a date range calculate your longest possible holiday dougmet makeparse From a make file, get the make view of the targets and rules and save to JSON dougmet maxholiday Within a date range calculate your longest possible holiday dougmet simToolsBG Demo package dougmet unsumnet R package to reconstruct aggregated network data. dougneedham GraphStats Create data frames based on iGraph graphs dougneedham Old_Temp douve UEMR R project for UEM dozmorovlab HiCcompare Joint normalization of Hi-C matrices, visualization and detection of differential chromatin interactions dozmorovlab HiCdiff Joint normalization of Hi-C matrices, visualization and detection of differential chromatin interactions dpagendam GEIC An R Package for landscape classification of Google Earth PNG Imagery dpagendam friedsIndex dpasqualin sfreemap A Simulation Free approach for Stochastic Mapping dpasqualin sfreemap.tests Some functions to help me test sfreemap dpasqualin sfreemapc C implementation of sfreemap dpasqualin sfreemapr Alternative implementation of Sfreemap - Simulation Free approach for Stochastic Mapping dpastoor PKPDdatasets Pharmacokinetic and Pharmacodynamic datasets for use in pharmacometrics and translational medicine dpastoor PKPDmisc miscellaneous functions and tools for use in pharmacometric analyses dpastoor RShortCourse dpastoor RTodo An R 'clone' of the sublimeTODO plugin for use when not in ST dpastoor SASxport mirror of SASxport as no longer maintained on CRAN dpastoor TestingSlidify dpastoor adjunct collaborative R server dpastoor babylon dpastoor bdreport create reports with bookdown while still keeping original individual Rmd files intact dpastoor blueprint dpastoor courier send messages across processes using zmq dpastoor covariate_sse dpastoor decorator color palletes and other decorations for R dpastoor devutils utility functions for R related projects and/or development dpastoor examplewebsite dpastoor lpgitbook literate programming with gitbook (and rmarkdown) dpastoor mrgexplore dpastoor mrgformat formating and other helpers for building models with a focus on mrgsolve dpastoor nonmem_scratch dpastoor overseer cache and document models dpastoor pagev1 package built at page 2017 workshop dpastoor phmxplore dpastoor phmxversecore core packages relevant to pharmacometrics-style analyses dpastoor phxpml dpastoor psncleaner A package for cleaning nonmem folders associated with PsN output dpastoor qpc package for performing quantitative predictive checks dpastoor rbabylon dpastoor remotedata dpastoor rnmu dpastoor satchel carry your data with you dpastoor simlog dpastoor slidifytest dpastoor test dpastoor test-gitbook dpastoor vancomycin dpaudel genotyping Convert GBS A/T/G/C/Y/... to nnxnp for JoinMap dpavlic EPmisc dperazo2 Fars_Func-Pkg dpgaile AAarrayExmpl dpgaile AutoAntArrayExmpl Auto Antigen Array Example dpgaile Schmidt525 dphansti Sushi Tools for visualizing genomics data dphansti Sushi2 Genome plotting package dphansti mango chia pet analysis software dpique oncoMix1 R package for identifying subgroups of highly expressed genes. dpique oncomix Gaussian mixture models for identifying oncogenes from RNA seq data dpkode funkyR a toy package for 757RUG presentation on R packages dppalomar sparseEigen sparseEigen dpphat MFtools This R library is a set of functions for reading MODFLOW and MT3DMS files dpphat partFilt This package is used to calculate particle filtration over distance. It is based on the work by Tobiason and O'Melia (1988) dpressel convotron Some convolution routines for R using Native Code (C++) dpressel lucifR Lucene Interface for R dpritchLibre Bioactivity dpritchLibre DSP_Package Software implementing Dunson day-specific probabilities methodology dpritchLibre MQC-Working dpritchLibre Marginal_Quantile_Classification Prototyping software for marginal quantile classification method dpritchLibre PepSAVIms An R package implementing the PepSAVI-ms method dpritchLibre dspBayes R implementation of Dunson and Stanford's "Bayesian Inferences on Predictors of Conception Probabilities" dpritchard dgmisc Miscellaneous R functions for research. dpritchard frair Tools for Functional Response Analysis dpritchard seaweedR A package for the seaweed lab at the University of Otago Marine Science Department dpritchard takiwaR Methods for "State of the Takiwa" Monitoring dprocter dpfuncs Collected useful functions dprocter modeid the base of a package to identify travel modes from accelerometry and gps data dr-JT dataoutput dr-JT datatransform Data Transformations dr-JT pupil Pupillometry Functions dr-JT resultsoutput resultsoutput drabinova difNLR Detection of Differential Item Functioning (DIF) and Distractor Differential Functioning (DDF) by non-linear regression models drackham CDADataSims Cognitive Diagnostic Assessments Data Simulations drackham dcmdata Diagnostic Classification Model Data Simulations dracodoc formatpaste RStudio Addin to remove hard line breaks in clipboard then paste dracodoc mischelper RStudio Addin that collected several miscellaneous helper functions to save some time dracodoc namebrowser RStudio Addin that scan all installed packages for names, search name to insert library() or package:: prefix dracodoc rCartoAPI a R package to wrap Carto.com API calls dracovich opendotaR R package to create easy way to interface with opendotas API in order to fetch parsed replay data. dragua xlsx An R package to interact with Excel files using the Apache POI java library dragua xlsxjars R package xlsxjars drammock phonR tools for phoneticians and phonologists drashley InversionAnalysis_HGSVC drashley InvertR R Package to locate putative inversions from Strand-seq data drastega specklestar Reduction of speckle data in R dratushnyy rdrfars A toy R package - assignment from coursera "Mastering Software Development with R" specialization drbulu shinyinputtables An R package for the creation of editable shiny html tables based on user-supplied data frame objects. dreamRs addinit Initialize an 'RStudio' Project dreamRs billboarder :bar_chart: Htmlwidget for billboard.js dreamRs esquisse dreamRs prefixer Prefix function with their namespace dreamRs shinyWidgets shinyWidgets : Extend widgets available in shiny dreamRs viewxl 'RStudio' addin for open data.frame(s) in Excel dreidpath SGA-LGA Calculates Small for Gestational Age (SGA) and Large for Gestational Age (LGA) cut-offs drewgriffith15 griffun my R functions drewlake steamR steam web api interface for R drewlanenga bashr bashr: Read bash files from R drewlanenga renv renv: Load environment files in R drf5n drf5nMisc drfinlayscott FLRcppAdolc R package that combines R, Rcpp and ADOL-C drfinlayscott RcppAutodif R package that combines R, Rcpp and Autodif drfinlayscott mizer Multi-species size-based ecological modelling in R drglcc packFars Fars package for class driegert transfer R package for multitaper transfer function estimation with (optional) offset frequencies. drighelli DEScan2 drisso EDASeq Development repository for EDASeq drisso RUVSeq Development repository for RUVSeq drisso SingleCellExperiment Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version. drisso myfilter This is an example package for the d-bug tutorial drisso zinbwave Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave dritoshi genesearchr Fast full-text search in NCBI RefSeq, UniProt-KB and Genome DNA sequence drizopoulos JM Joint Models for Longitudinal & Survival Data under Maximum Likelihood drizopoulos JMbayes Joint Models for Longitudinal and Survival Data using MCMC drizopoulos ltm Latent Trait Models under IRT drizztxx gatbxr Gentic Algorithm Toolbox Implemented in R drknexus Unity R Package for standardizing function calls across packages drknexus listWithDefaults Make an R list with default values drknexus mcparallelDo A Simplified Interface for Running Commands on a Parallel Process drknexus naptime Robust flexible Sys.sleep replacement drknexus repsych R Package for Reproducible Research in Psychology drkowal FDLM drkowal dsp Dynamic Shrinkage Processes drkstl1 HRM R Package for Analysing High-dimensional Repeated Measures drlevy ECS256-HW1 drmichaelnorth SchemaOnRead A schema-on-read package for R. drmjc blat An R package for I/O of UCSC BLAT data. drmjc excelIO an R package for I/O of Microsoft Excel files drmjc genomics An R package of code for genomics (mostly pre-NGS) drmjc lumidat An R package for processing Illumina gene expression idat files drmjc macsR An R package for handling MACS (ChIP-Seq) result files drmjc metaGSEA An R package for I/O of GenePattern datatypes, and running meta-GSEA analyses drmjc microarrays An R package containing a collection of microarray and genomic helper code. drmjc mjcaffy An R package for Affymetrix microarray data analysis drmjc mjcbase An R package of useful utilities that I find useful on a day to day basis. drmjc mjcgraphics An R package of graphics plots. Mostly base graphics for bioinformatics data drmjc mjcstats An R package of simple statistics code. drmjc updateR An R package for rapid R package development. The workhorse is updateR.sh, which can roxygenize, build, install, testthat, and deploy drodriguezperez drtools A compilation of different tools for R drodriguezperez financialsanctions drodriguezperez growthmodels A recopilation of nonlinear growth models used in many branches of science drodriguezperez kselection Selection of k in k-means clustering drodriguezperez whereiam Geolocation package for R droglenc FSA FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses. See installation instructions further below. droglenc FSAWs Functions for constructing and validating standard weight (Ws) equations for fish. droglenc FSAdata FSAdata contains data for use in common fisheries stock analyses. See installation instructions further below. droglenc FSAmisc In progress or miscellaneous functions eventually destined for the FSA package. droglenc FSAsim Simulation routines for fisheries stock assessment droglenc NCStats Helper functions for statistics courses at Northland College. See installation instructions further below. droglenc TestPackage droglenc fishWiDNR Helper functions for WiDNR fisheries analyses. drozdzowka kupPanAuto drpmcain decomp Rbased code for decomposition drsimonj Routine An R package containing routine functions drsimonj adapter R package for working with data from the CODES Research Lab Adaptability simulation drsimonj corrr R package for exploring correlations drsimonj jacksonphd Data from Simon A Jackson's PhD (2016) drsimonj numvert Numeric vector transformations in R drsimonj ourworldindata An R data package containing datasets from ourworldindata.org drsimonj pipelearner Machine learning pipelines drsimonj qrtenginer R package for parsing and analysing QRTEngine data drsimonj qualtricsr R package for working with Qualtrics surveys drsimonj twidlr data.frame-based API for model and predict functions drsmd23 Eq Visualize earthquake data drsmd23 Fars Submission for R packages course drsudhirpathak Building-an-R-Package druid-io RDruid Druid connector for R drveera ggman R package to create manhattan plots using ggplot ds-elections rcv ds4ci CustSegs Tools for customer segmentation ds4ci Test2 Just another test ds4ci dProf Data Profile ds4ci dplyrExamples A series of data munging examples using Hadley's dplyr and friends. ds4ci ds4ciMisc Miscellaneous Functions for DS4CI Projects ds4ci ds4ciProjPlay Play with project folder structure in context or RStudio & Hadley's tools and conventions ds4ci rfmr Recency, Frequency, and Monitary tools in R ds4ci tryOCPU Basic functions to try out OpenCPU functionality dsalfran ImputeRobust Multiple Imputation with GAMLSS dsasson48 Linreg dschlaep ecotoner dschlaep sdm.nlu2016ss dschlauch MONSTER Modeling Network State Transitions from Expression and Regulatory data (MONSTER) dschlauch WESTGO dschlauch bere Bipartite Edge Reconstruction with Expression data dschlauch bptools dschlauch stego Implementation of the stego algorithm - Similarity Test for Estimating Genetic Outliers dschmeh GoogleKnowledgeGraphR A simple R Package to retrieve information from Google Knowledge Graph API dschmeh lighthouseR A simple Package to start and retrieve Data from Lighthouse in R dschmeh seoR The Package provides various functions to get informations relevant for SEO related analysis in R dschneiderch LinearTheoryOrographicPrecip dschnelldavis survivalcalculator Bankruptcy Survival Calculator dselivanov FTRL R/Rcpp implementation of the 'Follow-the-Regularized-Leader' algorithm dselivanov LSHR Locality Sensitive Hashing In R dselivanov mlapi Machine learning in R that doesn’t suck dselivanov r-sparsepp Rcpp interface to sparsepp - efficient hash map for C++ dselivanov reco Fast and accurate top-N recommendation algorithms dselivanov rscalaKafka Tiny R kafka client with rscala dselivanov sparsepp Rcpp interface to sparsepp - efficient hash map for C++ dselivanov text2vec Fast vectorization, topic modeling, distances and GloVe word embeddings in R. dshukla1 arieltestpackage dsidavis CVRead Extract information from Curriculum Vitae/Resume in PDF dsidavis D3materials dsidavis DWR dsidavis FooTest dsidavis LCAP Reading LCAP PDF files with Jacob Hibel dsidavis LinkedInCompany Illustration for how to access company information from LI dsidavis RCleanProject R code to analyze and clean code in an evolving project to identify redundant code, dependencies, etc. dsidavis RSPARQL SPARQL client for R, built on SPARQL dsidavis RScopusAPI An interface to Elsevier's Scopus API dsidavis Raido R interface to AIDO Outbreak API dsidavis ReadPDF Tools for working with PDF documents, currently converted to XML via a modified pdftohtml dsidavis Rgoodreads Get data from goodreads.com's API and Web pages. dsidavis Rrawpoppler An R interface to libpoppler's C++ classes for reading and querying PDF documents dsidavis SpilloverDA Data analysis for zoonotics/spillover. dsidavis sta298_F15 dsjohnson pupR R package for model-based estimation of northern fur seal pup production dslaw clearskies Clear Sky Models in R dslaw r-stuff Some utility functions for interactive use in R dslaw ryesql YeSQL in R dsmirnov88 GermanWeatherData Set of R functions to retrieve daily weather data from the repository of the Deutscher Wetterdienst (DWD) dsnavega ancestralForester ancestralForester dsnavega raddins R utility functions and Addins for RStudio dsoave JLS JLS dsoave gJLS dspluta adamant adamant dsself electionpanel Pad electoral time-series data to include years between elections. dsself standardizecountries Package to standardize country names and set Correlate of War IDs dstanley4 apaTables Development version of apaTables R package. Current stable version is on the CRAN. dstanley4 learnSampling dstanley4 metaPsychometric Psychometric meta-analysis functions based on Schmidt & Hunter (2015) dstanley4 predictionInterval predictionInterval R package dstanley4 rvenn dstgithub GrpString Patterns and Statistical Differences Between Two Groups of Strings dstreble LumReader R package to simulate a Luminescence Reader dstreble TLdating R package for TL dating dswalter stats250 dswatson CCtestr A hypothesis testing framework for consensus clustering dswatson M3C A hypothesis testing framework for consensus clustering dswatson bioFunx Miscellaneous functions for bioinformatics pipelines dswatson biomisc Miscellaneous wrappers and functions for biostatistical things dswatson bioplotr Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines dswatson biowrapr Convenient wrappers for functions in bioinformatics analysis pipelines dswatson cc_testr A hypothesis testing framework for consensus clustering dtavern grainsizeR R package for extracting and analyzing grain sizes within R framework dtdoering grofitr Analyze yeast growth data using grofit and R dtelad11 cytutils Cytometry quality control and reproducibility utilities dtenenba AdvancedR_stage2 Demo script-to-package for Advanced R Course, Seattle, October 2012, stage 2 dtenenba AdvancedR_stage3 Demo script-to-package for Advanced R Course, Seattle, October 2012, stage 3 dtenenba AdvancedR_stage4 Demo script-to-package for Advanced R Course, Seattle, October 2012, stage 4 dtenenba AdvancedR_stage5 Demo script-to-package for Advanced R Course, Seattle, October 2012, stage 5 dtenenba AnnotationHub.new a place to collaborate on AnnotationHub without breaking it dtenenba BiocCheck dtenenba BiocContributions dtenenba BiocInstaller_2.10 BiocInstaller 2.10 dtenenba BiocInstaller_2.11 BiocInstaller_2.11 dtenenba BiocInstaller_2.12 BiocInstaller_2.12 dtenenba RGalaxy-vignette-changes dtenenba RGalaxy2 dtenenba RGalaxy_refactor RGalaxy_refactor dtenenba Rhtslib R wrapper for htslib for high-throughput sequence analysis dtenenba anRpackage just for testing. nothing to see here dtenenba atestpackage dtenenba gitsvntest dtenenba ishews dtenenba spbtest dtenenba spbtest2 dtenenba tapusnalang dtenenba yeastCorrelationFinder example package for AdvancedR2012 course dth2 EpiModelHIV_SHAMP Clone of EpiModelHIV for SHAMP project exploration dtharvey titrationCurves R functions for drawing titration curves dtkaplan COMP121 dtkaplan CommandHelper An interactive interface for editing potentially complex dplyr chains of commands. dtkaplan DCF Development version of the R package for DCF dtkaplan DCF-devel Testing ideas for a package for the DCF course, esp to deliver templates. dtkaplan DCFinteractive Interactive components of the DCF software dtkaplan DataComputing An R package for use with "Data Computing", by Daniel Kaplan dtkaplan Fetch Simple access to files on the web dtkaplan ICOTS-2014 Materials for the Project MOSAIC workshop at ICOTS 2014, held July 12-13 in Flagstaff, AZ, USA. dtkaplan MultipleChoice Functions for putting multiple-choice problems in shiny documents dtkaplan NIMBIOS Materials for tutorial on teaching with R at the NIMBIOS High-Performance Computing workshop dtkaplan checkr Checks code submissions in learnr (and potentially other) tutorials. dtkaplan checkr2 A proposed replacement for the checkr package dtkaplan dcfunctions Functions associated with the DataComputing book dtkaplan detex Translates simple latex into markdown dtkaplan dtkbook Utilities for inserting marginal tables, and other book-formating stuff in markdown dtkaplan exercise_data An R package with data for exercises. dtkaplan gghelper No description or website provided. dtkaplan gitgrade Tools for grading student work on git dtkaplan mdsint Resources for Modeling for Data Science dtkaplan natality2014 Data from the CDC on all 4 million births in the US in 2014 dtkaplan statPREPpackage A package of statPREP-related functions dtkaplan statisticalModeling duarteguilherme cryptocoins R Package 'cryptocoins' - Methods and data for dealing with Cryptocurrencies duccioa sptools R package with tools for editing, creating or converting "sp" spatial objects duhi23 bf4r Basic functions for R duju211 elor A package to access various football data sources from the web duju211 garfiled Read and handle Garmin .tcx files duke-lungmap-team ihc-image-analysis dumbR MSMCRAN duncanplee CARBayes Spatial Generalised Linear Mixed Models for Areal Unit Data duncanrellis SawTooth duncantl CGIwithR CGIwithR package allowing R scripts to run as CGI scripts on Apache Web servers duncantl CallCounter duncantl CodeAnalysis Tools for static analysis of R code duncantl CodeDepends Analysis of R code for reproducible research and code view duncantl DWR A simple sample interface to scraping data from the Department of Water Resources duncantl FastCSVSample Sample lines from a CSV file within R using C code duncantl FlashMXML --- !map:TaintedHash {} duncantl R2GoogleMaps Create HTML/JavaScript documents to display data using Google Maps. duncantl R2llvm An alternative version of RLLVMCompile to work with the types and AST objects from RTypeInference and rstatic packages duncantl RAmazonS3 R interface to Amazon' S3 storage duncantl RBrowserCookies duncantl RCUDA R interface to CUDA libraries duncantl RCodeGen Functions to aid generating R and C/C++ code duncantl RCompileIdioms Some functions for creating code for compilation with RLLVMCompile and Rllvm duncantl RD3Device A graphics device for R that outputs D3 code to display the R plot. duncantl RElasticSearch Interface from R to some aspects of ElasticSearch, the text search engine duncantl REuPathDB Interface to REST API of (EuPathDB) duncantl RExcelXML http://www.omegahat.org/RExcelXML duncantl RGoogleDocs Primitive interface to Google Documents from R duncantl RGoogleStorage duncantl RJSONIO Serialize to and from R and JSON, JavaScript Object Notation duncantl RKML Simple tools for creating KML displays from R duncantl RKMLDevice Graphics device for rendering R plots in KML duncantl RLLVMCompile LLVM-based compiler for R code (experimental) duncantl ROOXML Simple tools for Open Office XML documents duncantl ROpenOffice http://www.omegahat.org/ROpenOffice duncantl RSQLiteUDF R package for registering R functions and C routines as SQLite functions duncantl RSQLiteVirtualTable Create virtual tables from R objects that can be used directly in an SQLite database. duncantl RTypeInference Tools for inferring the types of inputs and outputs for functions and expressions duncantl RWordPress http://www.omegahat.org/RWordPress duncantl RWordXML Simple tools for Open Office Word Processing XML documents duncantl RYAML Interface to libyaml to read and write YAML for R duncantl Rflickr Interface to Flickr from R duncantl Rllvm R interface to LLVM C++ API to be able to create compiled code from within R duncantl Rnvvm R interface to libNVVM for working with PTX and LLVM for CUDA duncantl Rtesseract Interface to tesseract OCR system. duncantl SVGAnnotation Tools for post-processing SVG plots created in R for interactive and animated plots duncantl WADL Processing of WADL documents to generate R interfaces to REST APIs duncantl XDynDocs Dynamic and Structured Documents with Docbook and XML duncantl XMLRPC http://www.omegahat.org/XMLRPC duncantl Zillow duncantl png Clone of Simon Urbanek's R png package dungtsa BayesianPickWinner Generate statistical plan for Bayesian pick-the-winner design in a randomized phase II clinical trial dungtsa PowerPredictiveBiomarker A statistical tool for power calculation of predictive biomarker in prospective and retrospective studies. dungtsa test2 dunleavy005 phylomoments Efficient computations of phylogenetic stochastic mapping moments durandsinclair ozdate This project is to help my Tasmanian friend figure out which Tasmanian city is the best place to find a date, using census data to figure out where the male/female ratio is in her favour for her age group. durgamallesh DataProducts No description or website provided. durtal RcappeR R package to aid analysis and handicapping of Thoroughbred Horse Racing durtal betfaiR R package for the Betfair API durtal bloodstockR Collection of datasets from Tattersalls Thoroughbred Sales (2010 - 2015) durtal calheatmapR R package for using the cal-heatmap Javascript library durtal fantasysocceR R Package with functions/data for fantasy football (soccer) at fantasy.premierleague.com durtal rBloodstock Collection of datasets from Tattersalls Thoroughbred Sales (2010 - 2015) durtal servevolleyR R package for simulating tennis points::games::tiebreaks::sets::matches dustin couchbase-lite-ios dustin humanFormat Human formatting for R dustinfife DE An R package for generating confounding models in path analysis dustinfife fifer a collection of R functions for data manipulation, data analysis, and plotting dustinfife selection dustinfife witness An R model for eyewitness identification dustinphipps flowEvo Simplified Flow Cytometry for Experimental Evolution dusty-turner puertoRicoR duthedd ggplot2 dutri001 bfastSpatial Set of utilities and wrappers to perform change detection on satellite image time-series (Landsat and MODIS). Includes pre-processing steps and functions for spatial implementation of bfastmonitor change detection and post processing of the results. duxan data-products-assignment No description or website provided. duxan miRmine dv-trading moneRo An R interface to the monero daemon and wallet dvanclev GTrendsR dvanderbeek microserver-test dvantwisk AnnotationFilter dvantwisk GFF3utils dvdscripter ini Repository for R package ini dvera arthur Analysis of Replication Timing from High-throughput data Using R - NO DOCS YET dvera conifur my CONvenIence FUnctions for R dvera converge CONVErsion tools in R for GEnomic data dvera digger DIfferential Gene Expression in R dvera genmat GENomic MATrices in R dvera gyro R wrapper scripts for genomic tools dvera harp Haplotype-Assisted Read Parsing dvera mingle tools for working with HiC data dvera rage R-based Analysis of GEnomic data dvera rubber Tools in R for the Analysis and Visualization of Intervals and Scores dvera rugby R tools for the Ucsc Genome Browser dvera travis Tools in R for the Analysis and Visualization of Intervals and Scores dviraran xCell Cell types enrichment analysis dvm1607 TrajDataAccess dvm1607 TrajDataMining dvmlls bdscale Remove Weekends and Holidays From ggplot2 Axes dwbapst paleotree R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of these two data types. dwinter MoreUtils Some helper functions for interacive R dwinter Pegas My branch of Emmanuel Paradis' PEGAS library for phylogeography/popgen dwinter dfe Fitting, simulating and generally exploring the distribution of fitness effects from MA studies dwinter mdm simulating and fitting mixtures of Dirichlet multinationals in R dwinter mmod Differentiation statistics in R dwinter rensembl Get Ensembl data in R using the REST API dwoll DVHmetrics Analyze Dose-Volume Histograms and Check Constraints using R dwoll shotGroups Analyze shot group data with R: shape, precision, and accuracy dwysocki ASTP-613 dwysocki cross-spectral-analysis Provides functions for performing cross-spectral analysis on unevenly sampled timeseries. dwysocki random-noise-generation An R package for generating random noise. dxmix77 standardize My first Depository dy-kim DaVinchiCode dy-kim bcR A numeric base converter for R dy-kim powerNet dyavorsky HowToPkg A test package for learning about package development dyavorsky mypkg A Little Test Package dyerlab LiDARlicious dyerlab dlab Tools and tricks that I developed to make my life suck less than normal. dyerlab estudio This repository contains the code for a R library focused on spatial and ecological data manipulation salient for landscape genetic analyses. dyerlab footprints Some R routines that are have been used in the textual analysis of published scientific papers dyerlab gstudio An R package for the spatial analysis of population genetic data. dyerlab popgraph An R package for creating and manipulating population graph objects useful for spatial landscape and population genetic analyses of genetic marker data. dylan-stark ggfocus Focus, People! dylan-stark ucihar R package for the Human Activity Recognition Using Smartphones dataset dylan-stark wlehar dylandaniels ars dylandong12 hw8 Homework 8 for STAT 547 dynverse GPfates dynverse Mpath dynverse SCUBA dynverse StemID Unofficial StemID R package dynverse Wishbone dynverse cellTree A fork of the bioconductor cellTree repository dynverse topslam dzc5426 inclassdemo e-mu-pi adjustr (Un)Adjust stock price data for splits and dividends in nonstandard ways. e-sensing sits Satellite image time series in R e-sensing wtsps e-sensing wtss R Client API for Web Time Series Service e-sensing wtss.R R Client API for Web Time Series Service e3bo spaero Software for Project AERO e9group include replacement for R source() e9t polidata-r Political data interface in R. eReuse RdeviceScore An Algorithm to give an score to digital devices (computer, laptop,...) in function of internal characteristics eReuse Rdeviceprice Set a price for a digital device (laptops, desktops) based on a score based on the aesthetics and performance of the internal components and the after-sales service guarantee. eReuse Rdevicescore eRkaKrakow Tabloidyzer Proste narzędzie na potrzeby maratonu analizy danyc eRkaKrakow erkaSupport eRum2016 erum Abstrat format for eRum conference eRum2016 erum_abstract_template Abstrat format for eRum conference eScienceCenter SpArchR R Package - Collection of functions for spatial analysis in archaeology eahrne SafeQuant A Toolbox for analysis of Proteomics Data eahrne SpectroX Selection of Proteotypic peptides and creation of PRM/SRM assays. Alpha version! eahrne apmsTools Tools for analysis of Affinity Purification Mass Spectrometry data eamoakohene beamaColours BEAMA Corporate Identity Colours eamoakohene beamaSankey Package for plotting sankey diagrams eamoakohene beamaTrends Trends Analysis eamoakohene beamaUtils Utility functions eamoakohene beamafx Currency exchange rates database eamoakohene bsurvey Trend survey eamoakohene fame27 Fame27 eamoakohene onsR ONS Time Series Data Reader eamoakohene onsR2 Download Data from New ONS website eamoakohene orgalime meeting slides plots eamoakohene storedQry R6 class for managing sqlite stored queries eamoncaddigan GenderGuesser An R package for using the genderize.io API to guess the gender of names eamoncaddigan flightconflicts Tools to analyze conflicts between aircraft eamoncaddigan flightpathr Tools to analyze aircraft and flight path data. eamoncaddigan patternapply Iteratively try patterns against a character vector. eaoestergaard InvestmentFunnel The Investment Funnel Project eaoestergaard UNPIE UNPIE: Pensions in Europe An Erasmus+ Project sponsored by the European Union earcanal manjushri earowang hilo Compact Ranges earowang hts hts package for R earowang icon R package to easily insert web icons to RMarkdown earowang rwalkr R package to provide API to Melbourne pedestrian data earowang sugrrants SUpporting GRaphics with R for ANalysing Time Series earowang tscognostics R package to compute cognostics on time series data earowang tsibble Tidy Temporal Data Frames and Tools earowang walk R package to provide API to Melbourne pedestrian data earowang wanderer4melb A shiny app for wandering around the downtown Melbourne (2016) earthlab qtoolkit An R package that allows you to efficiently access, plot and analyze survey data via the Qualtrics API. earthlab smapr An R package for acquisition and processing of NASA SMAP data easttiger imultinom R package candidate + a MATLAB Class easttiger imultinom_old R package incomplete multinomial eaurele packageLoader No description or website provided. eaurele xlutils3 ebailey78 AERMODr Low-level interface to AERMOD for R ebailey78 crontabR ebailey78 jStats ebailey78 ncradPage NCRAD Wrapper Package ebailey78 netassess-new modernizing netassess pacakage ebailey78 ooDashboard ebailey78 raqdm access data from EPA's Air Quality Datamart in R ebailey78 rucl add ProUCL functionality to R ebailey78 rucl2 ebailey78 shinyBS Twitter Bootstrap Components for Shiny ebailey78 shinyLocalStorage ebailey78 shinyMenus menubars for shiny apps ebailey78 shinyStorage ebatzer QuidStats ebbertd opencastR ebbertd passR ebeneditos telegram.ext Develop a Telegram Bot with R ebenmichael ents R implementation of maximum entropy synthetic controls ebenmichael gaussianProcess R package for Gaussian Process regression with various kernels ebergel dueling shiny dueling input ebergel rpivotNoUI rpivotTable no UI eberlejonas TaxCI Tools for checking the integrity of DNA-barcode data ebgv homework2 ebimodeling biocro ebimodeling ghgvcR R implementation of the Greenhouse Gas Value Calculator ebimodeling sugarbag ebird auk This package has been moved to eblondel Rmapit Rmapit is a package for R that intends to facilitate the production of geographic maps, from simple maps to advanced maps embedding graphic charts. It will target users and organizations that need to produce maps in batch way like in atlas, yearbooks, or scientific monitoring reports. eblondel cleangeo Cleaning geometries from spatial objects in R eblondel geometa R tools to write, read & validate geographic metadata (OGC/ISO 19110, 19115, 19119, 19136 and 19139) eblondel geonapi R Interface to GeoNetwork API eblondel geosapi R interface to GeoServer REST API eblondel spread Tools for SPatial REAllocation of Data (SPREAD) eblondel sputils Utilities for geospatial data manipulation in R ebnavarro MyPack ebommes ebmisc R package with some useful functions ebridge2 Discriminability a repository for computing and analyzing datasets with discmriniability. ebridge2 fselect package for dimensionality reduction under supervised data scenarios ebuhle SalmonIPM Integrated population model for one or more populations of Pacific salmon ebuhle salmonIPM Integrated population model for one or more populations of Pacific salmon ebvm24 elisalib Personal R packages ebvm24 lyricsScrapeR Scape lyrics from letras.com ecbrown LaplacesDemon A complete environment for Bayesian inference within R ecbrown QTAIM ecbrown gsl eccel37 daatali echasnovski comperank Ranking Methods for Competition Results echasnovski comperes Create and manipulate competition results echasnovski highdown Code Highlight for pkgdown Site echasnovski jeroha Jeff-Roger-Hadley text analysis. echasnovski keyholder Store Data About Rows echasnovski ruler Tidy Data Validation Reports echohan gLRTH echohan rcure ecjbosu PerformanceAnalytics Modified R package ReturnAnalytics/PerformanceAnalytics ecjbosu tsoutliers eclarke SarcoidMicrobiome Code to generate figures, etc for the Clarke et al sarcoid microbiome paper eclarke eclectic random R functions eclarke eclthemes Useful theme(s) for ggplot2 eclarke ggbeeswarm Column scatter / beeswarm-style plots in ggplot2 eclarke heatmappr Functions for creating metagenomic heatmaps in ggplot2 eclarke sarcoid-microbiome-paper Code to generate figures, etc for the Clarke et al sarcoid microbiome paper eclarke scid-multiomics-paper Figures and tables for the SCID-X1 multiomics paper eclarke scid_microbiome_analysis ecmerkle blavaan An R package for Bayesian structural equation modeling ecmwf caliver caliver: CALIbration and VERification of gridded fire risk models ecohealthalliance eidith Data access and analytical tools for PREDICT ecohealthalliance gains-summary Simple summary statistics from GAINS database, in R. ecohealthalliance hotspots2 This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases". ecohealthalliance metaflu Functions for Avian Influenza Metapopulation Simulation ecohealthalliance sos Data cleaning and analysis for Surveillance of Surveillance ecology-rocks MakeMyForests Developing functions to import FIA data into SORTIE-ND ecology-rocks SortieIO An R Package For SORTIE-ND Input and Output ecology-rocks disperseR An R package for calculating spatial seed dispersal ecology-rocks grammaR Context-free grammar generation helper package for R econandrew gglabeleditor A shiny gadget to interactively edit ggplot2 labels econandrew ggtreemap Treemaps for ggplot2 economistgame RCryptoCoinsGUI Complete Dashboard for your CryptoCurrencies in R econtijoch Biomass-Workflow R Package for working with microbial abundance data econtijoch FEAT FMT Efficacy Analysis Toolkit ecoquants nrelutils NREL utilities R package, initially for ecoquants/nrel-uses ecor AnalyzeMoistureinSuperslab R package created to a study case of an application of GEOtop hydrological model applied top a hillslopes with two slabs ecor ClimClass R package for Climate Classification ecor ClimClassMap Spatial Extension of "ClimClass" ecor MeteoDataBayern An R Plug-in to get Real-Time Snow-Weather Data in Bavarian Alps (Germany) ecor MeteoDataFrance ecor MeteoDataPiemonte # MeteoDataPiemonte An R Plug-in to Get Real-Time Snow-Weather Data in Piemonte (Western Italian Alps) ecor MeteoDataTrentino Get Real-Time Meteorological Data in Trentino, Alps, Italy ecor RGENERATE RGENERATE R package (Development Page) ecor RGENERATEPREC RGENERATEPREC: generation methods for daily precipitation ecor RGENERATEPRECVis R functions to plot the results of RGENERATEPREC ecor RHUMIDITY RHUMIDITY (... calculates hourly air humidity time series from RMAWGEN simulations!!) ecor RMAWGEN Github version on RMAWGEN package (http://cran.r-project.org/web/packages/RMAWGEN/index.html) ecor RMAWGENplotAlpha Plotting functions for RMAWGEN (http://cran.r-project.org/web/packages/RMAWGEN/index.html) results ecor RMRAINGEN R Multi-site RAIN stochastic GENerator (Experimental) ecor RSMET An R Plug-in to Get Real-Time Meteorological Data in SMET Format ecor blockmatrix R Packages for "Block Matrices" ecor climograph R tools to create climographs ecor geographyTrentinoVis R Package about the use of Geographical Support for Visualisazion of Raster maps in Trentino Region (Italy) ecor geotopAnalytics This package implements GEOtop Analytics ecor geotopOptim PSO Calibration/Optimization Wrapper R Package for the hydrological model GEOtop. ecor geotopOptim2 ecor geotopbricks Development version of CRAN R package geotopbricks (http://cran.r-project.org/web/packages/geotopbricks) ecor geotopmap Functions with ggmap and raster R tools for mapping GEOtop results ecor geotoppoints R package and scripts for analysis of point results of GEOtop Distributed Model simulations ecor geotopsim ecor horizons An R package for quick computations of the horizons of some observation points ecor nccdosmart This package was created within the latest EUROPEAS "First Climate Services Masterclass: Energy, Tourism, Agriculture in a changing climate" (ENERGY group students' prototype)(http://www.euporias.eu) held in Bozen (South Tyrol, Italy), 18-22 May 2015. It manipulates netCDF climate data files with external tools, like 'cdo' and interfaces with "r… ecor ncdf4df R tools for netCDF-4 and data farames (applications for weather time series analysis) ecor rasterList A Package for a raster of Objects ecor rjgrassSmartGroovyBridge rjgrassSmartGroovyBridge: a draft bridge which allows the usage of jgrasstools (http://moovida.github.io/jgrasstools/) for spatial analysis from R ... (Coming Soon) ecor soilwater soilwater R package development repository ecos-umons extractoR Set of R packages that can be used to fetch, extract and dump CRAN packages metadata ecos-umons maintaineR maintaineR is both a package to analyze CRAN packages and a web dashboard to visualize results of the analysis. ecos-umons sourceR Clone detection for R ecos-umons timetraveleR VirtualBox virtual machine manipulation using Vagrant to recreate a R/CRAN environment. ecovirt EcoVirtual A R package for teaching ecological models ecovirt EcoVirtualPlugin R commander plugin for the EcoVirtual R package ecpolley SuperLearner Current version of the SuperLearner R package ecpolley SuperLearner_Old SuperLearner R package version 1.1-20 ecrc exageostatR An R Package for the Maximum Likelihood Evaluation on Large-Scale Spatial Datasets using Many-core Systems. edanalytics DelawareDataPackage Delaware data package to read in all the data needed for the training modules edcurry GABi R implementation of genetic algorithm framework for generalized subspace pattern mining eddelbuettel anytime Anything to POSIXct or Date Converter eddelbuettel apollo13 Houston, we have a problem eddelbuettel digest R package to create compact hash digests of R objects eddelbuettel drat Drat R Archive Template eddelbuettel gaussfacts The Greatest Mathematician since Antiquity eddelbuettel gcbd R package for GPU/CPU benchmarking on Debian-based systems eddelbuettel gettz Get System Timezone eddelbuettel gswdt 'gunsales' Analysis using 'data.table' eddelbuettel inline Inline C, C++ or Fortran functions in R eddelbuettel littler A scripting and command-line front-end for GNU R eddelbuettel mvabund-tests Statistical Methods for Analysing Multivariate Abundance Data eddelbuettel nanotime Nanosecond Resolution Time Functionality for R eddelbuettel pkgkitten Create simple packages which pass R CMD check eddelbuettel prrd Parallel Running of Reverse Depends eddelbuettel random R package for true random numbers from random.org eddelbuettel rapidatetime Datetime functionality from the C API for R eddelbuettel rapiserialize Serialization from the C API for R eddelbuettel rbenchmark Benchmarking routine for R eddelbuettel rcppannoy Rcpp bindings for Annoy eddelbuettel rcppapt Rcpp Interface to the APT Package Manager eddelbuettel rcppbdt Rcpp bindings for Boost Date_Time eddelbuettel rcppcctz Rcpp interface to CCTZ library eddelbuettel rcppclassic Deprecated 'classic' Rcpp API eddelbuettel rcppcnpy Rcpp bindings for NumPy files eddelbuettel rcppde Rcpp port of Differential Evolution eddelbuettel rcppexamples Examples of using Rcpp to interface R and C++ eddelbuettel rcppgetconf Rcpp Interface for Querying System Configuration Variables eddelbuettel rcppgsl Rcpp integration for GNU GSL vectors and matrices eddelbuettel rcpphyperdual Rcpp Interface to Hyper-Dual Numbers eddelbuettel rcppkalman Kalman filtering via RcppArmadillo eddelbuettel rcpplonglong Rcpp test package for long long conversions eddelbuettel rcppmlpack2 Rcpp Interface to MLPACK eddelbuettel rcppmsgpack MsgPack Headers for R eddelbuettel rcppredis R interface to Redis using the hiredis library eddelbuettel rcppsmc Rcpp bindings for Sequential Monte Carlo eddelbuettel rcppstreams A C++ DSEL for real-time event stream processing eddelbuettel rcpptoml Rcpp Bindings to C++ parser for TOML files eddelbuettel rcppxts Rcpp interface to xts objects eddelbuettel rcppziggurat Rcpp bindings for different Ziggurat RNG implementations eddelbuettel rdieharder R interface to the Dieharder RNG test suite eddelbuettel rfoaas R interface to FOAAS service eddelbuettel rinside Seamless embedding of R in C++ programs eddelbuettel rmsfact Amazing Random Facts About the World's Greatest Hacker eddelbuettel rprotobuf R Interface to Protocol Buffers eddelbuettel rpushbullet R interface to the awesome Pushbullet service eddelbuettel rquantlib R interface to the QuantLib library eddelbuettel rshark R interface to the Shark machine learning library eddelbuettel rvowpalwabbit R interface to the Vowpal Wabbit eddelbuettel rvw Starting from the 'r.vw' R interface to Vowpal Wabbit eddelbuettel sanitizers Sample R package with C/C++ code to trigger Address and Undefined Behaviour Sanitizers eddelbuettel tint Tint is not Tufte eddelbuettel winsorize Remove outliers by means of winsorization edelcallejoc rspecies edgararuiz dbplot Simplifies plotting of database and sparklyr data edgararuiz dbutilities A set of time and cost (import/compute) saving functions to work with databases and Spark edgararuiz dbvis edgararuiz tidypredict Run predictions inside the database edinhooo testrepo test edlee123 baby No description or website provided. edonnachie ICD R Package for Handling ICD-10 metadata edonnachie queuer A simple job scheduler and build system for R edouardfouche R-streamgenerator A statistical muldi-dimensional stream generator for benchmarking stream mining algorithms edsgard scphaser R package for haplotype phasing using single-cell RNA-seq data eduardohet resulteR edvalente edsteR Personal helper package for R edvbb HRanalytic edvbb HRanalytics edwardpmorris AcademicRmarkdownTemplates Provides templates useful for academic writing in Rmarkdown. Works best with Rstudio. edwardpmorris FASTSpectra A R package being develop to process hyper-spectral data collected from an Ocean Optics USB2000 spectroradiometer. edwardpmorris FAST_LeafArea A collection of scripts for processing images of plant structures collected using a simple flatbed scanner. These are just control scripts for automated processing using the R package LeafArea (https://cran.r-project.org/web/packages/LeafArea/index.html). edwardpmorris specchioR Basic R wrapper to interact with the SPECCIO Spectral Information System (https://github.com/ahueni/SPECCHIO). IN EARLY DEVELOPMENT! edwardpmorris unitlabels A R package to help with formatting parameter and unit labels for insertion in R, Rmarkdown and LaTeX edwardslee alphabetr R package for obtaining TCR alpha-beta sequence pairs edwbaker DrupalR Basic access to Drupal sites from R. edwbaker autolighttrap edwbaker dotjs edwindj bmcluster edwindj category Utility library for categorical data in R edwindj cbsodataR Statistics Netherlands (CBS) OpenData API Client for R edwindj chunked Chunkwise Text-file Processing for 'dplyr' edwindj d3rug edwindj daff Diff, patch and merge for data.frames, see http://paulfitz.github.io/daff/ edwindj datalog edwindj datapackage edwindj ffbase Basic (statistical) functionality for R package ff edwindj ffbase2 dplyr for ff edwindj fstparts edwindj hunspell.nl R wrapper for Dutch hunspell dictionary edwindj lsh locality sensitive hashing in R edwindj nca edwindj odataplyr dplyr for OData (not functional yet) edwindj ral R package containing RAL classic colors, mainly used for varnish and powder coating edwindj role edwindj tabplotd3 edwindj treecolors edwindj vptree edwindj vw utilities for vw edwindj whisker {{mustache}} for R edzer gstat Spatial and spatio-temporal geostatistical modelling, prediction and simulation edzer hexbin Hexagonal binning routines and plotting methods edzer intervals R package intervals edzer mnf No description or website provided. edzer mss R package: meaningful spatial statistics edzer qrng R interface to a quantum random number generator edzer rgdal2_travis edzer sf edzer sf_dep a package depending on sf edzer sfr Simple Features for R edzer sp Classes and methods for spatial data edzer spacetime Classes and methods for spatio-temporal data edzer spnetwork Spatial networks, using SpatialLines for edges edzer trajectories Handling and analyzing trajectory and movement data edzer units Measurement units for R edzer vardiag An R package for variogram diagnostics eead-csic-eesa fingerPro_2 Sediment source fingerprinting eeenilsson layout An R package for layouting tables, using the S4 method eeholmes MARSS MARSS Package eeholmes SardineForecast eeholmes VRAP R package for the VRAP program eeholmes VRAPCpp R package for VRAP rewrite eeholmes eehutils My personal utilities for papers, blogs, website eellpp textutils R package providing utility function for processing text, modelling and nlp eenblam frstr Yet another forest inventory package for R eepgwde Rweaves1 My R package eestileib ComplexPoly Venables et.al. R polynomial library with tiny changes to support polynomials with complex coefficients efbbrown census.au An R package of public Australian Govt. datasets and useful constants efbbrown make make() function for R efiivanir ivanirlib efriedland friedland egaffincahn finances R package to track finances egarpor quotes Random quotes directly from R! A collection of 61,071 unique quotes for a variety of topics and from renowned personalities egarpor rp.flm.test Software companion for "Goodness-of-fit tests for the functional linear model based on randomly projected empirical processes" egarpor sdetorus Statistical tools for estimation of toroidal diffusions. Software companion for "Langevin diffusions on the torus: estimation and applications" egeulgen pathfindr Pathway Enrichment Analysis Utilizing Active Subnetworks eggbenny Charts eggbenny barcharts eggbenny trendy egking DSPRqtl http://flyrils.org egnha nofrills Low-cost anonymous functions egnha rong The rong approach to wrong inputs. Two (w)rongs make a right. egnha valaddin Functional input validation to make R functions more readable and robust egonw BridgeDbR BIoconductor R package for BridgeDb egonw genalg egoodwintx corpRate package for corporate finance egoodwintx crsraExploratoryGraphics egoodwintx crsraeconometrics lectures and lessons from Econometrics course on Coursera https://www.coursera.org/learn/erasmus-econometrics/ egoodwintx helpeR R helper functions that I use frequently egoodwintx hruglm code for HRUG talk on lm and glm egoodwintx hrugskel simple skeleton to workflow the capstone class egoodwintx hrugtestexample A simple package to show how to use the testthat package egouldo GrasslandAllocatr A decision tool for allocating management actions among a suite of grasslands eharpste ds.plot A small R package for producing nicer learning curve plots from PSLC DataShop export files eheinzen Ethan eheinzen arsenal eheinzen elo eheisman dssrip R functions to read/write data from HEC-DSS files. eheisman hydroutils An R package for handling hydrology data and plotting hydrologic frequency curves. Forked from DSSRip ehelegam elvesR Personalized R functions ehfhcrc ImmSig2 ehfhcrc ImmSigPkg ehfhcrc UpdateAnno ehiroyasu Population ehkennedy npcausal ehrlinger distributeRF Split and merge random forest analysis and results ehrlinger ggRFVignette Vignettes for ggRandomForests ehrlinger ggRandomForests Graphical analysis of random forests with the randomForestSRC, randomForest and ggplot2 packages. ehrlinger hviPlotR Publication Graphics with CCF HVI clinical investigations formatting ehrlinger l2boost Efficient boosting methods for linear regression. ehrlinger matchingWeight Matching Weight Propensity Scoring ehrlinger randomForestSRC A fork of randomForestSRC package from CRAN ehrlinger temporalHazards Temporal Decomposition of Hazards modeling ehsan66 ICAOD Finding Optimal Designs for Nonlinear Models ehsan66 dod D-optimal designs for nonlinear models ehsan66 emoptim Evolutionary Multimodal Optimization ehsanmok foofactors Make factors less annoying ehsanx iptw This R package calculates various measures of association and helps understand and visualize the link between causal models such as Marginal Structural Models and Standerdized measures. ehsanx simMSM R package that simulates data suitable for fitting Marginal Structural Model. eifer4 stochasticSampling eilslabs ComplexHeatmap eilslabs EnrichedHeatmap eilslabs HilbertCurve eilslabs YAPSA eilslabs circlize eilslabs epic eilslabs gtrellis eilslabs rGREAT einabadi-sh farsdata einabadi-sh test einaooka tea.color Eina's custom color fucntions einaooka tea.datetime Eina's custom date time functions einaooka tea.eo.plots Eina's custom plotting functions einaooka tea.utilities A random collection of Eina's custom functions einarhjorleifsson dataWKMSYREF2 einarhjorleifsson datras rices datras functions only einarhjorleifsson datras2 datras functions einarhjorleifsson datrasr A "recovery" of https://code.google.com/p/datras/ einarhjorleifsson fishdown einarhjorleifsson fishvice fishvise version 2 einarhjorleifsson fishvise Various functions used at Marine Research Institute, Reykjavik, Iceland einarhjorleifsson fjolst2 fjolst - functions only einarhjorleifsson fpress2 hcr evaluation - see https://einarhjorleifsson.github.io/fpress2/ einarhjorleifsson ggmisc me doing gg extentions einarhjorleifsson gildi intellecta speaking: -> totally useless space einarhjorleifsson gisland smá gis einarhjorleifsson gisland2 gisland goes sf einarhjorleifsson husky functions made in a size for the larger or heavier than average boy einarhjorleifsson iceshape miscellaneous mapping objects einarhjorleifsson landr Various landings statistics for the North Atlantic einarhjorleifsson mac Mackerel harvest control rule simulation 2014 einarhjorleifsson mar Communicating with MRI database einarhjorleifsson mriass adm code for the iCod assessment einarhjorleifsson namr namibian stock assessment functions einarhjorleifsson pax Calculating catch at age einarhjorleifsson ramsam some functions related to the data munging from the sam fish stock assessment model einarhjorleifsson rbx einarhjorleifsson selectr Selection functions einarhjorleifsson smx survey data einarhjorleifsson splatter einarhjorleifsson surbar Coby Needle's surbar code as R-package einarhjorleifsson taggart Communicating with MRI tagging database einarhjorleifsson tcrenv2016data xx einarhjorleifsson testADMB einarhjorleifsson vms me playing vmstools einarhjorleifsson wices R functions for ICES webservice API eisuke-inoue APPEstimation eivindhammers saveGPKG Save sf-objects in GPKG files using "ogr2ogr" eivindhammers sfExtensions ejames917 AI-Lab2_Where_is_Croc Group 58 ejanalysis UScensus2010blocks Data on 11 million Census blocks - pop, lat/lon, area, urban ejanalysis analyze.stuff Tools that help analyze data in data.frames and matrices using R ejanalysis batch.summarizer Get summary stats and graphics for an uploaded file of raw results from an EJ batch buffer analysis tool ejanalysis countyhealthrankings Health indicators for US Counties ejanalysis ejanalysis Environmental justice analysis tools for R ejanalysis ejscreen Create EJSCREEN dataset ejanalysis proxistat Tools for analysis of distance and proximity scores in R ejanderson1 CostEffectiveness ejardim FLMethLen Methods for length data in FLR ejbrahms CampusFocus ejh243 EPIC.DNAm.FACS.sorted.BloodCellTypes Estimate the cellular composition from whole blood ejh243 EPICBloodCompCalc Estimate the cellular composition from whole blood ejikeugba CatgoF An R-package for the goodness-of-fit of categorical response models ejoranlien smsprocess A package for importing and processing Android text message backups. ejosymart RepSeg Herramientas para la generación de reportes de captura, esfuerzo y CPUE ejosymart sexMat Estimate Size of Sexual Maturity. ejosymart sizeMat Estimate Size at Sexual Maturity. ejosymart ssmRG Estimate Size of Sexual Maturity based on relative growth. ekarbowiak SuperFarmerPKEK ekawaler RadPheWAS ekawaler simplePheWAS ekbrown byucorpora Webscrape KWIC results of the BYU corpora ekbrown corpling Simple tools for corpus linguists ekenah transtat An R package for the analysis of infectious disease transmission data ekernf01 branchmodel Fit a Y shape to your data. ekernf01 freezr R package to help organize data analysis projects. ekhco statar Stata like functions but in R ekleiman1 EMAtools eknit isotopevis eknit kevin Kevin eknud namely A package with some basic HR functions and a Namely ggplot2 theme ekstroem Austin An R package for power analysis - groovy baby! ekstroem DKdata Danish data sets for R ekstroem MESS Miscellaneous Esoteric Statistical Scripts - an R package ekstroem ShinyPowerOneSample ekstroem austin ekstroem cleanR An R package for data cleaning ekstroem cleaneR No description or website provided. ekstroem dataMaid An R package for data screening ekstroem iTable ekstroem mommix Moment-based estimation of regression mixtures ekstroem networkR R network analysis for citations and social networks ekstroem socceR No description or website provided. ekxb Pacote1 elaineliu5 DVM Disease Vector Modeling elara7 VCM elastacloud automatic-data-explorer An R package to explore and quality check data elbamos clusteringdatasets An R package providing datasets useful for testing clustering algorithms elbamos largeVis An implementation of the largeVis algorithm for visualizing large, high-dimensional datasets, for R elben10 DST1 elben10 DST3 elben10 Rmodelling A new approach to modelling in R elben10 Rnewyorktimes elben10 dst elben10 dst5 elben10 dstR What the Package Does (Title Case) elben10 econr A new approach to modelling elben10 modelR Statistical modelling made easy elben10 rdst elben10 rettevejledninger elben10 tidymodelR eldafani intsvy A working copy of the CRAN intsvy package eldarrak FLightR R package to position animals with solar geolocation archival tags eldinidle ActiPro R package used to process files created by ActiGraph Link ActiLife eleanorcaves AcuityView This code provides a simple method for representing a visual scene (i.e. modifying an image) as it may be seen by an animal with less acute vision. elenakhusainova EPI_Rpackage elessert760 DevDataProds Course Project elhumble grains R package for calculating how much water you need for your grains elhumble primerdesignR R package for designing primers elianecpinheiro PrimeiroPacoteEliane elianecpinheiro Teste eliardocosta ssdet An R package for sample size determination eliascis clubTamal eliascis plmNeviim eliascis spd4testing eliasdabbas advertools Productivity and analysis tools for online marketing eliasdabbas radvertools Productivity and analysis tools for online marketing eliasmacielr msu elijahedmondson GRSD Association Mapping in Multiparent Mouse Populations (CoxPH, GLM) elijahedmondson HZE Mapping suscetibility loci in HZE irradiated HS/npt mice elinw CUNYFirst elinw lehmansociology eliocamp metR Tools for Easier Analysis of Meteorological Fields eliocamp meteoR Tools for Better Analysis of Meteorological Fields eliotmiller R2phylowood Convert species centroids to phylowood input eliotmiller addTaxa An R package to add missing taxa to molecular phylogenies eliotmiller corrplotter Paneled correlation plots eliotmiller ebirdr eliotmiller ecoPDcorr eliotmiller labAnalysis eliotmiller metricTester eliotmiller networkTricks Code and sample data associated with our paper on dominance hierarchy of North American feeder birds eliotmiller phylospacer eliotmiller simpleFDis Experimental elisa-esteban BestTSPred An R package to obtain the best point prediction and its standard deviation elisa-esteban TSPred An R package to produce point predictions and their standard deviations elishayer mRchmadness NCAA men's basketball data scraping and bracketology R package elittmann erictools eric's personal repository of R functions elldc singlecellUtils Utilities for single-cell data analysis ellessenne charlson An R package for computing the Charlson comorbidity index. ellessenne comorbidity An R package for computing comorbidity scores. ellessenne interest ellessenne rsimsum Analysis of simulation studies including Monte Carlo error ellessenne uolvid ellisvalentiner lubridateExtras Convenience Functions for Manipulating Datetimes elo2zero footballR r package for analysing sport events data elo2zero juicystat.vis helper methods for juicystat.com elo2zero oddsandsods miscellaneous functions to ease-up an everyday work with R elo2zero rsaas elo2zero rseries elo2zero sport R packages for sport analytics elong0527 MINT An R package for Microbial Temporal Dependency Comparison elong0527 MicroTDC An R package for Microbial Temporal Dependency Comparison elong0527 NMIT An R package for Microbial Temporal Dependency Comparison elong0527 StudyDesign elong0527 evacure elong0527 python_demo elong0527 scvxclustr https://cran.r-project.org/web/packag… eloualiche entrydatar Downloading data from the BLS eloualiche miscr Miscellaneous R functions eloytf caeasciiR elpibeperez rImageVisualizer R studio plugin that makes posible to visualize matrixes as images elpidiofilho easyFit elpidiofilho labgeo R package to classification and regression tasks in an easy way elqumsan RNAseqMVA Evaluation of multivariate analysis methods for the supervised classification of RNA-seq data elray1 PACwithDDM R package for manuscript "Physical Activity Classification with Dynamic Discriminative Models" elray1 pdtmvn R package implementing partially discretized truncated multivariate normal distributions elreda arbot elsage GarConGPX Read in the .gpx files from your favorite GPS hardware manufacturer (Rhymes with Farmin'). elsander PredictImportance elsayed-lab BSgenome.Lmajor.friedlin A BSGenome for Leishmania major, strain friedlin elsayed-lab EuPathDB EuPathDB recipe for the Bioconductor AnnotationHub elsayed-lab Leishmania.major.Friedlin Meta-package linking species-specific annotations for L. major strain Friedlin elsayed-lab Toxoplasma.gondii.ME49 Meta-package linking species-specific annotations for T. gondii strain ME49 elsayed-lab Trypanosoma.brucei.TREU927 Meta-package linking species-specific annotations for T. brucei strain TREU927 elsayed-lab Trypanosoma.cruzi.CLBrener Meta-package linking species-specific annotations for T. cruzi strain CL Brener elsayed-lab Trypanosoma.cruzi.CLBrener.Esmeraldo Meta-package linking species-specific annotations for T. cruzi strain CL Brener Esmeraldo-like elsayed-lab Trypanosoma.cruzi.CLBrener.NonEsmeraldo Genome wide annotations for Trypanosoma cruzi strain Friedlin Non-Esmeraldo-like haplotype elsayed-lab Trypanosoma.cruzi.Sylvio.X10.1 Meta-package linking species-specific annotations for T. cruzi strain Sylvio X10/1 elsayed-lab TxDb.LmajorFriedlin.tritryp25.genes Transcript annotation package for L. major strain Friedlin elsayed-lab TxDb.LmajorFriedlin.tritryp27.genes Transcript annotation package for Leishmania major strain Friedlin elsayed-lab TxDb.LmajorFriedlin.tritryp32.genes Transcript annotation package for Leishmania major strain Friedlin elsayed-lab TxDb.TcruziCLBrenerEsmer.tritryp25.genes Transcript annotation package for T. cruzi strain CL Brener Esmeraldo-like haplotype elsayed-lab TxDb.TcruziCLBrenerEsmer.tritryp27.genes Transcript annotation package for T. cruzi strain CL Brener Esmeraldo-like haplotype elsayed-lab TxDb.TcruziCLBrenerEsmer.tritryp32.genes Transcript annotation package for T. cruzi strain CL Brener Esmeraldo-like haplotype elsayed-lab eupathdb EuPathDB recipe for the Bioconductor AnnotationHub elsayed-lab hpgltools A collection of R functions to aid in host-pathogen genomic research elsayed-lab org.LmjF.tritryp.db Genome wide annotations for Leishmania major strain Friedlin elsayed-lab org.TGME49.toxo.db Genome wide annotations for Toxoplasma gondii strain ME49 elsayed-lab org.Tb927.tritryp.db Genome wide annotations for Trypanosoma brucei strain TREU927 elsayed-lab org.TcCLB.esmer.tritryp.db Genome wide annotations for Trypanosoma cruzi strain Friedlin Esmeraldo-like elsayed-lab org.TcCLB.nonesmer.tritryp.db Genome wide annotations for Trypanosoma cruzi strain Friedlin Non-Esmeraldo-like haplotype elsayed-lab org.TcCLB.tritryp.db Genome wide annotations for Trypanosoma cruzi strain CL Brener elsayed-lab org.TcSylvio.tritryp.db Genome wide annotations for Trypanosoma cruzi strin Sylvio X10/1 elthonf EMFGeneticos Genetic Algoritm solution with Graphical Plots written in R Language elthonf Rna-em-R Redes Neurais Artificiais em R elyasb PUMSr R package for loading fixed-width data from IPUMS datasets. elyasb pumsr R package for loading fixed-width data from IPUMS datasets. emanuelhuber CBRDM R-package (S4 classes) to simulate the subsurface heterogeneity of coarse, braided river deposits in terms of facies and hydraulic properties. emanuelhuber GauProMod R-package for Gaussian Process (GP) modelling. The core functions are coded in C++ and based on the EIGEN library (through RcppEigen). emanuelhuber RGPR R-package with S4 classes for ground-penetrating radar (GPR) data visualization, analysis, and processing. emanuelserbanoiu demo-licenta embruna refnet update to refnet package for processing Web of Science Records emelianova fragaria emelianova tinyr tiny moss ecology study emeryyi KERE emeryyi erboost Automatically exported from code.google.com/p/erboost emeryyi ezglm Automatically exported from code.google.com/p/ezglm emeryyi fastcox Automatically exported from code.google.com/p/fastcox emeryyi gcdnet Automatically exported from code.google.com/p/gcdnet emeryyi gglasso Automatically exported from code.google.com/p/gglasso emeryyi glmvsd emeryyi hdtweedie Automatically exported from code.google.com/p/hdtweedie emeryyi moe emeryyi msda emeryyi mvcr emeryyi rome emeryyi soil emeryyi tdboost Automatically exported from code.google.com/p/nptweedie emeyers NDTr The Neural Decoding Toolbox in R emilbp gRaphene emilbp vertexCA emillykkejensen DKstatbankR R wrapper for Statistics Denmarks API emillykkejensen textfunc R package with a few nifty text functions emilopezcano SixSigma SixSigma R package emilopezcano optimr R package for the generation and solution of optimization models and instances emiltb peakr Interactive tools for simple datasets emily5 exCorr An R package for the exploratory analysis of differential correlations within a dataset emilyborsting nsqiputils Utility functions for working with the ACS NSQIP dataset using R. emilygoren BinQuasi emilyrmax myfirstpkg emiruz automata.r Flexible state machine builder and associated tools for R emissarydingx tvvar_v1.0 emittman backblaze emittman dpOMP Try out OpenMP as a way to accelerate sampling for DPGMM model. emittman label_switching Implement functionality and tests to perform label-switching moves as in Papaspiliopoulos and Roberts emittman somePackage A minimal example illustrating compilation of relocatable device code in R package emkayoh Colour Scripts to create the ideal observer emkayoh Dark Scripts to analyse dark adaptation data emkayoh JavaScripting emmecola MEDIPS emraher cbRt R interface to CBRT EVDS API emraher kgsr Download data from KGS emreg00 pepper PePPer - Personalized Perturbation Profiler emsweene SuBLIME_package emsweene oasis R package for OASIS lesion segmentation emunozh GREGWT A GREGWT implementation on R emunozh heat Estimate heat demand of residential buildings emunozh testmsim A package for testing spatial microsimulation methods emvolz-phylodynamics phydynR emvolz-phylodynamics phyland Phylogeographic inference with structured coalescent models emvolz-phylodynamics skyspline emvolz rclustnet Generate a random graph with desired size, clustering coefficient, and degree distribution emvolz treedater Scalable relaxed clock phylogenetic dating emwest stat547HW09 A repository created for Stat 547 homework 09, which contains my fancy package emwozniak Table1 Create summary tables (Archived for MCW) emwozniak kmrskplot Generate survival plots with risk tables emwozniak reportR Stylize knitr with miscellaneous reporting tools enaY15 MultilevelFunctions Multilevel data manipulation enanomapper renm An R client package for querying data from the database API. encoredkjs macros encoredkjs nilmJPN endiyan kinclong enesn rBIST A R Package that fetch XU100 Stock Data. engie-mariangela-arca mytutorialgit engie-mariangela-arca tuto englianhu Rmodel Rmodel which compile the index of soccer teams. eniclas FAIRsimulator Functions to simulate the FAIR trial enield filmpalettes enricoschumann IButils R Utility Functions for the IBrokers Package enricoschumann NEWSRSS Utilities to convert an R package NEWS file to an RSS feed enricoschumann NMOF Functions, examples and data from the book "Numerical Methods and Optimization in Finance" by M. Gilli, D. Maringer and E. Schumann (2011), ISBN 978-0123756626. enricoschumann NethackLogfiles Read logfiles of the ancient game of Nethack. enricoschumann PMwR Functions and examples for 'Portfolio Management with R': backtesting investment and trading strategies, computing profit-and-loss and returns, reporting, and more. enricoschumann Perl6.Form Format Strings with Perl6::Form enricoschumann Rd2HTML5 Transform Rd Into HTML enricoschumann SSRN Download author stats from SSRN enricoschumann bundesbank R scripts for downloading time-series data from the Bundesbank (German central bank) enricoschumann datetimeutils R utilities for working with dates and times enricoschumann esutils enricoschumann mailtools R utilities to handle email. enricoschumann org R utilities for working with Org files enricoschumann orgutils R utilities for working with Org files enricoschumann pacificFX R function for downloading historical FX data from 'Pacific Exchange Rate Service' enricoschumann password R function for creating random passwords of letters, numbers and punctuation enricoschumann runStats Running Statistics of Numeric Vectors enricoschumann textutils R utilities for handling strings and text enricoschumann tsdb A terribly-simple data base for time series enriquea cnveR enriquea feseR feseR: Combining feature selection methods for analyzing omics data ensoesie epidemics R package to define seasonal influenza epidemic onset and duration. enviroCar enviroCaR Import and analysis functions for the R environment for statistical computing and graphics environmentalinformatics-marburg CAST Caret Applications for Spatio-Temporal models environmentalinformatics-marburg ESD Biodiversity Exploratories vegetation analysis. environmentalinformatics-marburg GSODTools R functions to select, download, and process GSOD data. environmentalinformatics-marburg LiDARtools environmentalinformatics-marburg Rainfall Functions for training, predictiion and validation of an MSG based optical rainfall retrieval environmentalinformatics-marburg Reot Empirical Orthogonal Teleconnections in R environmentalinformatics-marburg Rsenal magic R functions for things various environmentalinformatics-marburg WoLi Workflow LiDAR: Database query, calculation structural parameters, preparation for analysis environmentalinformatics-marburg biodivTools Tools for data handling and analysis related to some biodiversity studies. environmentalinformatics-marburg cesium Cesium wrapper to R environmentalinformatics-marburg chirps environmentalinformatics-marburg eimarGsodTools Collection of functions to process NOAA GSOD data. environmentalinformatics-marburg gimms Download and process GIMMS3g NDVI binary data environmentalinformatics-marburg gpm Geospatial predictive modeling using parameterized and unparameterized models. environmentalinformatics-marburg heavyRain environmentalinformatics-marburg inkili insect prediction for kilimajaro for master thesis (Alice) environmentalinformatics-marburg magicVis Visual things for things visual. environmentalinformatics-marburg mapview Interactive viewing of spatial objects in R environmentalinformatics-marburg remote empirical orthogonal teleconnections in R environmentalinformatics-marburg reset Remote sensing-based evapotranspration environmentalinformatics-marburg satellite Class and preprocessing methods for (satellite) remote sensing datasets environmentalinformatics-marburg satelliteTools Higher-level processing methods for (satellite) remote sensing datasets environmentalinformatics-marburg speciesdist R package for species distribution analysis on a rather global scale environmentalinformatics-marburg thermographyTS Time-Sequential Thermography enxt fxutil eogmartins biotelemetry Development of R functions for basic processing and visualization of data collected with biotelemetry techniques (e.g. radio, acoustic). ep1804 el my routinE Library epgui NTA An open source Nanoparticle Tracking Analysis package for R epigen RnBeadsAnnotationCreator epijim EpijimFunctions My R functions epijim dataspec epijim episheet R functions based on episheet and the text book Modern Epidemiology, Second Edition, by Kenneth J. Rothman and Sander Greenland. epijim episheet_shiny Shiny app for episheet epijim events_booking epijim notifyme Send notifications from R to phillips hue or device (as push notification) epijim posterslides epijim raincpc R code specific to the creation of the raincpc package epinotes bmiage epinotes vennplus Modification of the Plotrix function "intersectDiagram", an alternative to the Venn diagram epiviz bioc2013 epiviz epivizFileServer epiviz epivizTypes epiviz epivizWidgets epiviz epivizr Devel branch of epivizr bioconductor package epiviz epivizr-release Release branch of the epivizr bioconductor package epiviz epivizr-tmp R/Bioconductor package to visualize epigenomic data on epiviz epiviz epivizrData Data Management API for epiviz interactive visualization app epiviz epivizrServer epiviz epivizrStandalone Run all epiviz components locally epiviz metavizr R package to manage and visualize metagenomic datasets with metaviz epoyatos elenapackage epoyatos elenapackage2 epoyatos epoyatospackage eprifti momr MetaOMineR base package. Mining metagenomics data in R. eprince1991 labr epurdom cancerTiming epurdom clusterCells R package of techniques for comparing clusterings of single-cell sequencing data epurdom clusterExperiment R package of techniques for comparing clusterings of single-cell sequencing data epurdom clusterExperimentShiny epwilliams23 Final-Project equastat Emisc Improved performance and ease-of-use for general programming tasks with R eralpdogu MSstatsQC An R package for longitudinal system suitability monitoring and quality control for targeted proteomic experiments eralpdogu MSstatsQC_Rpackage This is a repository for MSstatsQC R Package erblast oetteR personal R package erdto TPDT R package for a sort of "functional t-test". Transforms raw data from two groups into functional data and performs a procedure generalized from the common t-test to test for a difference between the two groups of funtions. eregmig carcrashassignment Building R Packages assignment erenturunc AnalyticsMiner Data Mining on Google Analytics erhard-lab lfc R package for modelling count ratio data eribul classifyr Classification of Cases into Deterministic Categories eribul eqcw EQ cross walk eribul incadata Package to handle data sets from INCA eribul r2samplesize Investigating the effect of sample size on R2 and RMSE eribul rinca Anonymise INCA data eric-Rstats test-packages eric-ward bycatch Repository for FRAM analysts to fit Bayesian GLMs to estimate bycatch and expand estimates to fleet level eric-ward getais Function for filtering and sampling AIS data from MarineCadastre.gov in batches eric-ward ggrowth fit gompertz growth models ericaenjoy3 CHIPRNA ericaenjoy3 GOplot Gene ontology enrichment and clustering analysis ericaenjoy3 GRFLoop ericaenjoy3 RNA ericaenjoy3 TPMaccess ericaenjoy3 TdAvg ericaenjoy3 addgrids3d ericaenjoy3 multiplot ericgoolsby Rphylopars Phylogenetic Comparative Tools for Missing Data and Within-Species Variation ericgoolsby phylocurve erichare bulletr Analyze bullet striations using nonparametric methods erichare discreteRV R Package for easy generation of Random Variables erichare gfsr R package for retrieval and analysis of GFS (Global Forecasting System) weather data erichare shoeprintr R package to perform a matching analysis of two shoeprints erichseamon ML-examples erichseamon climatemap erichseamon crop_indemnity crop indemnity code erichseamon dmine-python-landslides erichseamon dmine-python-water erichson rSVD Randomized Matrix Decompositions using R erickawaguchi controlTest controlTest Package erickawaguchi powerCompRisk powerCompRisk Package erickim GA Stat 243 Final Project, Implementations of Genetic Algorithms erickramer GSEAR erickramer batch.vcf functions for integrating BatchJobs and VCF processing erickramer dgraph erickramer loggr Bringing the pipe to logging since 2016 erickramer restricted.betweenness R package for calculating restricted betweenness erickramer shiftr erickramer songgenerator ericlecoutre wldsmisc R package -- WeLoveDataScience misc. functions ericmkeen bangarang ericnovik introstats Data and Functions for Statisitcs With R Book by Stinerock and Novik ericnovik statsR-book ericpante marmap Import, plot and analyze bathymetric and topographic data ericrayanderson shinymaterial ericscrum snpltools A tool box of R functions for the Stanford Systems Neuroscience and Pain Lab ericscrum toyPackage A practice toy package for R, developed at UW SISBID in one morning ericstrobl RCIT The Randomized Conditional Independence Test (RCIT) and the Randomized conditional Correlation Test (RCoT) erictleung dada2HPCPipe :ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM erictleung poofsi :zap: Learn concepts from Nature Methods' series "Points of Significance" ericwatt eapath Computational Models for Estrogen and Androgen Receptor Activity ericwatt toxboot Bootstrap Methods for ToxCast High Throughput Screening Data ericwol mia Medical Imaging Analysis erikbjohn api.keys List containing apis. Data list stored in dropbox list erikbjohn assign.locations erikbjohn dropbox.data erikbjohn geocode geocode addresses and tract queries erikbjohn methods.shapes methods for shape file manipulation, buffers and transformation erikbjohn methods.string String methods for address cleaning in the Denver CMSA erikbjohn outlines building outlines erikbjohn parcels shapes.parcels and parcels.address erikbjohn pkg.data.paths paths for package data hosted on dropbox erikbjohn points points data for geocoded addresses erikcs penfmbr Penalized FamaMacBeth erikcs wrdsr Connect to Wharton WRDS trough R erikdf sklearnPCA Small package that demonstrates how Python can be called from R using reticulate erikjandevries r.dstools.ej eriknil depError Minimal reconstruction for devtools issue #1262 erikor cudalite A light weight CUDA package for R which may or may not offer any advantage over RCUDA erikor slinky Putting the fun into LINCS analysis erikpal bRush An R client for the Instructure Canvas API. erikpeter fbroc R package for fast bootstrapping of roc curves erikrani nvdr An R package for building forecasting models using data from National Vulnerability Database (NVD) https://nvd.nist.gov/vuln/data-feeds#CVE_FEED erikriverson mutable An R package for generating markup tables erikriverson smsbar Load, summarize, and produce graphics from your SMS Backup & Restore XML export files. erikvschaik bfastOpt Optimization Routines(s) for BFAST Monitor eringrand RUncommon A package of personal functions I use at work or in my personal projects. erinkreiling erinr erinr erinkreiling simplemathr eriqande CKMRsim efficient sampling for close-kin mark recapture power estimation eriqande GSImulator R-package for using ms2geno eriqande Rrunstruct R package for running the program structure and comparing results from multiple runs eriqande SNPcontam Methods and software for identifying contaminated samples from SNP genotypes eriqande afblue BLUE estimation of allele frequencies given a pedigree eriqande assigner Assignment Analysis with GBS/RAD Data using R eriqande fullsniplings Prototype program to do reconstruction of full sibling groups eriqande gaiah Genetic And Isotopic Assignment using Habitat eriqande genoscapeRtools tools for NGS data on migratory birds...mostly eriqande gids genomic islands of differentiation simulations eriqande gpiper Genetic analysis pipelines from SWFSC's Molecular Ecology and Genetic Analysis Team eriqande herring Code and data for genetic stock identification of East Coast river herring eriqande inbredPermute Simple package for permuting rxy values and testing about the influence of inbreeding on survival of offspring eriqande lowergranite assessing precision and accuracy of spawning run estimates eriqande pedvis Simple R scripts to call Graphviz dot to draw pedigrees eriqande psiblings pseudo-likelihood sibship reconstruction R/ADMB package eriqande rrhw Functions for presenting and grading homework problems given in R markdown documents eriqande snps2assays Prepare SNP Assay Orders from ddRAD or RAD Loci eriqande subspawn Simple simulations/calculations of subspawning. eriqande swfsc.mega.tools eritema inseqDiv R package for clonality analysis erleholgersen hedgehog Various R functions for personal use erlichlab el.db R package to help connect and get data from the Erlich Lab db. erlisR iLaplace This function computes the improved Laplace approximation of Ruli et al. (2015) for multivariate integrals of user-written functions. See Details below for more information. For practical examples on the use of this package please refer to the \code{iLaplaceExamples} package. erlisR iLaplaceExamples ernestguevarra nipnTK ernestguevarra odkr ernestguevarra squeacr R Tools for Semi-Quantitative Evaluation of Access and Coverage Analysis erocoar ggparl Parliament Diagrams with ggplot2 erolbicero propfolio Tools for Portfolio Management and Proprietary/Algorithmic Trading erolbicero tsconv Time-series convenience (tsconv) functions, using XTS, PerformanceAnalytics, Quantmod, and other packages to simplify common tasks erossiter catSurv erossiter sitsr erramirez podr podr is a R package for exploring and working with podcast data eruud eric.pilr.r Testing R Scripts eruud test.calorimeter.r ervanSTRI AGBflux_pack Package with all functions to compute AGB flux erzk PostcodesioR API wrapper around postcodes.io - free UK postcode lookup and geocoder erzk fnirsr Package for analysing functional near-infrared spectroscopy (fNIRS) data erzk zooplaR An R API wrapper for Zoopla esander91 LizUtilities R package of my personal commonly used utility functions esander91 PredictImportance eschoie26 drinkingage eschoie26 legaldrink escuccim topten An R package for creating linear models using top ten predictive features from data, from Coursera Developing Data Products course eshinesimida subpathway-analysis esibert ichthyoliths Analyze Morphological Disparity of Ichthyoliths - R Package esm-ispm-unibe-ch ConditionalPower A collection of functions for the Conditional Power in MA and NMA esm-ispm-unibe-ch NMAJags esm-ispm-unibe-ch PainCancerRanalysis To analyse data for WHO analysis esm-ispm-unibe-ch cproutines esm-ispm-unibe-ch flow_contribution esm-ispm-unibe-ch nmadata esm-ispm-unibe-ch sequentialnma an updated version of sequential NMA to work in parallel with esm-ispm-unibe-ch sequentialnma2 an updated version of sequential NMA to work in parallel with esmucler gdpc This package provides functions for computing the Generalized Dynamic Principal Components proposed in Peña and Yohai (2016). esmucler mmlasso R Package to calculate the MM-Lasso and adaptive MM-Lasso estimators proposed in Smucler and Yohai (2015). esnapd DegeneratePrimerTools Utilities for Creating and Validating Degenerate primers espenmei readFolder espinielli circr circr - circular plot data preparation in R esplint IRACpm IRACpm R Package: Applies a 7-8 order distortion correction to IRAC astrometric data from the Spitzer Space Telescope esppk fas_pkg estebanlp GoogleDataSearch A short package to create data.frame objects from Google Map queries estebanlp test1 esteinig netview Package netview for R estepi ASpli Analysis of alternative splicing using RNAseq estepi ASpliD estepi pkgs esterodr Courserapackassig estsyawo bayesprdopt eta21 DiffusionRgqd Inference and Analysis for Generalized Quadratic Diffusions eta21 DiffusionRimp eta21 DiffusionRjgqd Tools for Performing Inference and Analysis on Quadratic Jump Diffusion Processes etabari ehsanr etaijacob BioseqUtils An R package containing various biological sequence analysis tools etaijacob CMA An R package for correlated mutation analysis both at codon and amino acid levels etaijacob MAPDB An R package for mapping Pfam multiple sequence alignment (MSA in sth format) or Uniprot (MSA in fasta format) to PDB residue coordinates. etesdahl claimWranglR This is an R package containing a single function that creates binary variables for the presence of user-identified medical claims codes within claims data. ethanbigelow ecodataanalysis A collection of environmental and ecological data analysis ethankale streamtools R functions to calculate characteristics of streams, such as stage-discharge relationships. ethanyxu ADPclust Fast Clustering Using Adaptive Density Peak Detection ethanyxu lasr ethanyxu test etheleon MetamapsDB Structured Queries and analyses used with MetamapsDB etheleon PADI etheleon lucidity etheleon mapBlat for mapping reads to the max diversity region etheleon metamaps Structured Queries and analyses used with MetamapsDB etheleon neo4jworkshop etheleon neuralNetr etheleon newbler etheleon reAssemble etheleon recommendR etheleon report etheleon water rock etheleon zoomGraph ethevenot r-w4m2bioc Conversion between the Workflow4metabolomics tabulated format and the ExpressionSet bioconductor class ethz-asl libnabo A fast K Nearest Neighbor library for low-dimensional spaces etiennebr geom Spatial data for tibble etiennebr taco Wrap system calls in R etiennebr visualraster Illustrate some operations of the raster package etlundquist eRic An R package with src/man files for predictive modeling functions I've developed etlundquist rpackage Learn how to create an R package and manage it via GitHub etmc hadron R package implementing analysis tools for lattice QCD etnetera-activate WATAtools R package with some utils etsakl DasyMapR Geographical ETRS-LAEA Grid Based Dasymetric Mapping etsakl UrbanLocalAgency euba BacArena agent based modelling euctrl-pru pruatlas The Atlas and Utilities for PRU Maps eugeniaeueu Onassis Ontology Annotations and Semantic Similarity Software eulogepagui mbrglm eusebe ascii A R to ascii converter eusebe biostat2 For now, a partial rewrite of remix eusebe markup A rewrite of the ascii package eusebe remix Mix and describe evan-l-munson SAoTD Sentiment Analysis of Twitter Data evanbiederstedt FusionVizR visualization tool for RNA-Seq fusions against WGS breakpoints evanchildress perform Modeling to estimate growth performance curves from mark-recapture field data evanchildress plotHacks wrapper functions and tweaks to make plotting with base r easier evanchildress wbPersist Analysis to evaluate the role of connections between habitats in persistence of brook trout in West Brook evandeilton capsmsdr A package for the Capstone in Mastering Software Development in R evandeilton cvforecast Multiple forecasts based on Time Series Cross-Validation evandeilton lkd Lagrangian Katz Distribution (LKD) evanodell emisc Misc functions and tools evanodell hansard An ironically named R package to automatically fetch data from the UK Parliament API. evanodell mnis An R package for downloading data from the Members' Names Information Service API. evanodell nomisr nomisr evanodell parlitools A collection of useful tools for UK politics evanpk cprad evanpk cprad2 evansergeant RSurveillance Tools for planning and analysis of disease surveilance in R evanwang1990 ClusterTools Tools for Cluster Analysis evanwang1990 FMwR FMwR: A Library of Factorization Machines in R Based on libfm evanwang1990 ScoreModel evanwang1990 dpCluster evanwang1990 location evanwang1990 process evanwang1990 r_project evelinag clusternomics Integrative clustering for heterogeneous biomedical datasets. evelinangelica Rackaton Aprendendo a criar pacotes everdark ArgParser command line argument parser for R, implemented in S4 everydayduffy ArducopteR everydayduffy DroneLabToolkit eveskew reskew R convenience functions to rescue some time evgeniC snookerorg R Client for the snooker.org API evgeniikonev mlmetric evgeniikonev rhow_dev evgeniikonev simplepbar A very simple text progress bar in 1 code string evgeniikonev xandrews Andrews Curves function in R evigorito eQTL-from-RNA-genotyping evjrob aertidywells Convert the Official AER Well List into a Tidy Tibble evmo Rgps Tools for munging GPS data evocellnet ksea Kinase Activity Predictions from shotgun proteomics evolutics RFormatter R source code formatter evorystrant MinsalDataAnalisys Proyecto basado en el uso de OpenCPU para el analisis, extraccion y pre-pocesamiento de datos medicos para el Ministerio de Salud de El Salvador evoshape deformetrics An R package providing statistical methods related to Geometric Morphometrics ewenharrison summarizer Summarize variables and regression models for final publication ewenme ewen A Personal R Package ewenme fplR Tools for Working with Fantasy Premier League (FPL) data in R ⚽️ ewenme fplr Tools for working with Fantasy Premier League (FPL) data in R ewenme geniusr R interface to the Genius API 🎤 📝 ewenme ghibli Studio Ghibli colour palettes for R 🎨 🎌 ewouddt BiBitR Simple R-wrapper for Java BiBit Algorithm by Domingo et al. (Biclustering Algorithm for Binary Data) ewouddt CCCBiclust R Wrapper for (e-)CCC Biclustering Algorithm ewouddt CSFA Connectivity Scores using Factor Analysis Methods ewouddt RDownloads Example Package from short course to plot R Downloads ewouddt RcmdrPlugin.BiclustGUI R Commander Plug-In for Biclustering ewouddt Sunclarco Development Repository for Sunclarco ewouddt UdderQuarterInfection Udder Quarter Infection Data Package - Development ewouddt eefAnalytics ewymathe ewymathe.github.io ewymathe testALTREinstall exoplanetX greyforecasting grey forecasting package expectopatronum austRia R data package for Austria. expectopatronum rtwgpx Read, transform and write gpx files in R expectopatronum zipcode expersso BIS Programmatic access to BIS data expersso OECD Reproducible and programmatic access to OECD data expersso WHO Programmatic Data Retrieval from the World Health Organization expersso ameco European Commission Annual Macro-economic (AMECO) Database expersso cbtransparency Dataset on central bank transparency from Dincer and Eichengreen (2014) expersso csp csp: Correlates of State Policy Package for R expersso ecb R interface to the European Central Bank's Statistical Data Warehouse (SDW) API expersso eurobarometer expersso eurostatR Reproducible and programmatic access to Eurostat expersso gesis R Client for GESIS Data Catalogue (DBK) expersso hdr Interface to the UNDP Human Development Report API for R expersso maddison Maddison Project Database expersso pdftables Programmatic Conversion of PDF Tables With R expersso piglatin Translate texts to Pig Latin expersso swiftkey_app expersso tmdbr explodecomputer alspac explodecomputer simulateGP R package to simulate genotype-phenotype maps and analyse them exploratory-io exploratory_func R functions for Exploratory expo45 wk4project Project for the JHU R course exseivier dupliR Calculates differences and Pearson correlation of expression level between duplicates / homoeologs exseivier miRclump Finds natural microRNA sponges in mRNA sequences extigy nclbayes An R package containing functions and demos for use with the NCL Bayes courses. eyalbenda liftoveR Lift over regions from one genome build to another by realignment eyesofbambi TravelAIR eyzhao SignIT Mutation Signatures in Individual Tumours Deciphered by MCMC eyzhao hrdtools ezgraphs ggguitar Guitar Tablature and ezgraphs rbogglesolver R Boggle Solver ezgraphs rtrie Simple implementation of Tries in R ezwelty dpkg Data Packages for R ezwelty linbin Binning and Plotting of Linearly Referenced Data f-silva-archaeo fastmaRching This is an R implementation of the Fast Marching Method (FMM), first developed by Sethian (1996), with the modifications of Silva and Steele (2012, 2014). f-silva-archaeo skyscapeR skyscapeR: an R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. f0nzie old.zFactor f0nzie rMRST R interface to Matlab Reservoir Simulation Toolbox f0nzie rNodal Nodal Analysis for Petroleum Production Engineering f0nzie rODE Ordinary Differential Equation (ODE) Solvers Written in R Using S4 Classes f0nzie zFactor f1kidd fmlogit Fractional Multinomial Logit using R faarseer systems_biology fabarca reutiles fabian-s RLRsim R package for fast & exact (restricted) likelihood ratio tests for mixed and additive models fabian-s spikeSlabGAM R-package: Bayesian variable selection, model choice, and regularized estimation for (spatial) generalized additive mixed regression models via stochastic search variable selection with spike-and-slab priors. fabian-s stabpath fabian-s tidyfun Clean, wholesome, tidy fun with functional data in R fabianbruckschen breadcrumbs R package for creating features/variables out of mobile phone call detail records on an anonymous tower aggregated level fabiogm kmisc fabriciotav fulcrumplus-r fabriziomaturo AnnuityRIR R package AnnuityRIR. Annuity Random Interest Rates proposes different techniques for the approximation of the present and final value of a unitary annuity-due or annuity-immediate considering interest rate as a random variable. fabriziomaturo BioFTF Biodiversity Assessment Using Functional Tools faccinig Mqi R package to facilitate queries in messy databases. faccinig RE An easy and simplified way to wrangle characters using only base functions. faccinig questionR fadiphi cats cats R package example fadiphi mybtcr R-wrapper of Rbitcoin package fadouaem int fadouaem vbd faffr mscatdif faffr reshapeBP faffr reshapeCP Reshape form data from ChangePond faganok faem Financial and Economics Modeling (in process). faganok scenario Time series scenarion forecasting fagirtmi DatabaseConnector fagirtmi SqlRender fairmiracle AMOUNTAIN Active modules for multilayer weighted gene co-expression networks: a convex optimization approach fairmiracle MODA MOdule Differential Analysis for weighted gene co-expression network fairmiracle PPINet fairy1991 coolpackage This is gonna blow your mind. faizan-khan-iit fars fars package for R faizan-khan-iit gsoc_animint Animint, GSoC fake1884 KBminmaxpoly fakenmc micompr Multivariate independent comparison of observations. falling-fruit fruitr R utility functions for Falling Fruit famuvie 2016_RisingAshes Companion package to RisingAshes paper (Phytopathology, 2016) famuvie ArchaeologicalFloors Companion package to Acheaeological Floors paper famuvie breedR Statistical methods for forest genetic resources analysts famuvie cbK famuvie geoRcb An extension of package geoR that works with cost-based distances famuvie multinomINLA Bayesian Multinomial models with INLA famuvie myAnimalINLAfixes Minor fixes to R's AnimalINLA package famuvie peaks Finding peaks in wood-density profiles famuvie shpReader Provides a shapefile Reader for ProjectTemplate famuvie straddin RStudio addin for printing the structure of a highlighted object famuvie testpkg Dummy Package for Testing Purposes fanlilavu fanlilavu Bachelorarbeit_Lange fanouyang networkanalyticspackage fansaviola myfirstpackage testing, data analysis fapjan mytestpkg test fapola RPyGeo Update of RPyGeo package - currently WIP farfallawang mosaicApps a toolkit with apps mainly for teaching stats and applied math farhanas-monashuniversity example farhanmubasher Tamahagane-v3 Same function parameters for each finction farhanmubasher tamahagane R package/library for Basics Rapid Miner Functions farhanmubasher tamahagane-v2 CSV version of Tamhagane faridcher cacp faridcher futils my utility functions in R faridehbagherzadeh VariableSelection farihakhan powersPackage fascinatingfingers CheckDigit R package to calculate and verify check digits fascinatingfingers MontyHall Functions to simulate rounds of Let's Make a Deal fascinatingfingers ZillowR An R interface to the Zillow API fastGEM GEM A package to efficiently navigate epigenome wide association studies (EWAS) and integrate genotype and interaction between genotype and environment (GxE). fasterius seqCAT A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data. fate-ewi bayesewi fatore mp Multidimensional projections R package. fauconnier AMI Simple Maximum Entropy Classifier in R faulconbridge lintr faulknerjam bnps R package for Bayesian nonparametric adaptive smoothing with Stan faustogc streamChaos R package for analysis of nonlinear data streams fauxneticien anamR Helper functions to read/write/process data from the Kaytetye database (KDB) fauxneticien kookaburra fauxneticien kphon Helper functions to work with the Kaytetye Phonological Corpus (KPHON) fauxneticien phonpack A package of fun(ctions) for doing phonetics in R fauzipandya advfclust Advance Fuzzy Clustering fauzipandya cofclust Consensus & Optimization Fuzzy clustering favorov GenometriCorr favorov differential.coverage Differential coverage: coverage : bed file collection from MACS and we want to know which intervals are deferentially covered. favstats favstats fawda123 ASCI R package for calculating ASCI scores fawda123 CTDplot Plot CTD water quality data along an estuarine axis fawda123 EGRETci fawda123 EstuaryMetabolism Estimate metabolic rates in estuaries fawda123 Jabbrev Convert Journal Titles Between Long and Short Formats fawda123 NeuralNetTools R package of generic neural network tools fawda123 SWMPr r package for accessing, processing, and evaluating data from SWMP of NERRS fawda123 WRTDStidal functions required to implement the weighted regression approach for estuaries fawda123 WtRegDO A simple package to implement weighted regression on dissolved oxygen time series fawda123 catch_fun A simple function to get fisheries catch data from MNDNR lake finder website fawda123 coral_bcg Repository for Coral BCG R package fawda123 fastablast Functions for coupling mothur fasta files with blast fawda123 fawda123.github.io fawda123 ggord a take on ordination plots using ggplot2 fawda123 imputeTestbench Test Bench for Missing Data Imputing Models/Methods Comparison 88 commits 2 branches 0 releases 2 contributors fawda123 rStrava Functions to access data from Strava's v3 API. fawda123 rflowcam Import, format, and analyze FlowCAM data fawuuu Zigzag fayezor cat_package No description or website provided. fayezor fayezoR Frequently used working functions fayezor myRpackage Frequently used working functions fayezor scDesign Experimental design package fbachl flow Optical flow using INLA fbachl inlabru inlabru fbachl spin SPatial INference fbaffie ShinyModules A repository where reusable Shiny modules will be stored fbaffie fitdistrib Set of functions to fit probability distributions (package-making exercise) fbalao AFLPsim AFLPsim fbalao hybSNPsim Simulation of biallelic SNP and hybridization fbarulli Lib3AF 732A94 Advanced Programming in R fbarulli lib5af fbarulli lib6af fbertran BioStatR Companion package for the book. Initiation à la statistique avec R. fboehm boehm My useful functions fboehm countalleles fboehm gemma GEMMA algorithm for estimating variance components in multivariate linear mixed effects models fboehm gemma2 Zhou & Stephens (2014) GEMMA multivariate linear mixed model fboehm imsart rmarkdown template for IMS journal articles fboehm mitra2013 R code for Mitra et al. (2013) JASA article fboehm pleio fboehm pleiotropy R package that implements Likelihood ratio test for pleiotropy v close linkage fboehm qtl2pleio Hypothesis test of close linkage vs pleiotropy in multiparental populations fboehm wordtools Tools for text data fboehm xu2012 Implements Gibbs sampler methods of Xu et al (2012) fboehm xu2015 Gibbs sampling functions for posterior inference when using DPP prior after Xu et al 2015 fboulnois made Microarray Analysis of Differential Expression fbreitwieser Vennerable Fork of Vennerable by Jonathan Swinton fbreitwieser isobar isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data fbreitwieser pavian Interactive analysis of metagenomics data fbreitwieser sankeyD3 D3 Sankey Network Graphs from R fbreitwieser shinyFileTree fbreitwieser sunburstR fcampelo CAISEr CAISEr - Comparison of algorithms with Iterative Sample size Estimation in R fcampelo ChocoLattes Pacote R para processamento de informações a partir de conjuntos de CV Lattes fcampelo ExpDE Modular DE algorithm for the experimental investigation of the effect of different recombination / mutation / selection operators. fcampelo GECCO2016-ExpDE fcampelo MOEADr R package MOEADr, a modular implementation of the Multiobjective Evolutionary Algorithm with Decomposition (MOEA/D) framework fcampelo chaser R package for sample size estimation in experimental comparison of metaheuristics fcavalcantirj rji-reports Relatórios (em R) utilizados pela RJI fcbarbi ardl R Package for Auto Regressive Distributed Lag time series regression. fcbarbi fcbarbi.github.io fcbarbi macroR Macroeconomic Analysis in R fcharte mldr R package for analyzing and manipulating multilabel datasets fcharte mldr.datasets The universal multilabel dataset repository fchuffar bot BoT (stands for Bag of Tasks) is an R package allowing to distribute independent tasks over many cores and many computing nodes. fchuffar epimedtools A package allowing multi-omics analysis using R fchuffar methmybeachup An R package that easily convolves methylome signal. fchuffar ptldata A set of data dedicated to the ptlmapper R package. fchuffar ptlmapper This package contains functions that are used to map single-cell Probabilistic Trait Loci (scPTL). The principle of scPTL mapping is to consider a distribution of single-cell traits as the phenotype of a (multicellular) individual, to acquire this phenotype in many individuals, and to scan the genome for DNA variants that change this phenotype. fcocquemas bulast Simpler R package to access the Bureau of Labor Statistics (BLS) API fcocquemas rdatastream A R interface for Datastream and Thomson Dataworks Enterprise fcocquemas rtumblr A R interface for the Tumblr API v1 fcocquemas secmarketstructure R package to retrieve the SEC market structure data fdavidcl dlvis No description or website provided. fdavidcl dlvisr Visualizations for unsupervised deep learning techniques fdavidcl ruta Unsupervised Deep Architechtures in R fdavidcl rutavis Visualizations for unsupervised deep learning techniques fdboost FDboost Boosting Functional Regression Models. The current release version can be found on CRAN (http://cran.r-project.org/package=FDboost). fdebastiani gamlss.spatial gamlss.spatial: Spatial Terms in GAMLSS Models fdelzompo BuildingRPackage Week 4 Assignment Coursera fdelzompo MSDR Final project for Coursera fdetsch MSEF Multi-step error filter for meteorological data. fdetsch Orcs Omnidirectional R Code Snippets fdetsch avpr fditraglia binivdoctr fditraglia fmscr fmscr fditraglia forcedMigration fditraglia frankmisc An R package containing miscellaneous functions that I use all the time. fditraglia ivdoctr ivdoctr fditraglia mbereg fditraglia testpkg fditraglia zoofactr fdrennan drentools A package for Freddy. fdrennan fdRen fdrennan fdRenn My personal package fdrennan fdRennan My personal package fdrennan interview Quick Package Build for Interview fdrennan webtools fdschneider caspr Cellular Automata for Spatial Pressure in R fdschneider traitdataform A package to manage and compile functional trait data into predefined templates febr-team febr-package Repositório Brasileiro Livre para Dados Abertos do Solo - pacote para R federicogiorgi aracne.networks aracne.networks, a data package containing gene regulatory networks assembled from TCGA data by the ARACNe algorithm federicogiorgi vulcan Virtual ChIP-Seq ANalysis through networks federicogiorgi vulcandata federicomarini flowcatchR A framework for tracking and analyzing flowing blood cells in time lapse microscopy images federicomarini flowcatchR-release A framework for tracking and analyzing flowing blood cells in time lapse microscopy images - Release version federicomarini haR A Palette Generator Inspired by Haribo Gummy Candies federicomarini ideal Interactive Differential Expression AnaLysis - DE made accessible and reproducible federicomarini pcaExplorer pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data federicomarini rbioc2016 rbioc2016 contains the datasets used in the course and other extra material feiyoung clse Corrected Least Square Estimation or Full Information Maximum Likelihood Estimation for Linear Regression When Data Include Missing Values. feiyoung simutool Common Toolbox in numerical simulation in statistics paper felasa fdtools Paquete con funciones auxiliares felipegerard binsegment Binary Segmentation Trees felipegerard optimbucket An R package to optimally bucket continuous variables felipegerard varselect Semi-automatic Variable Selection felipepratalima taxdumpr R package for NCBI's taxonomy manipulation felixcuneo FuncMeth felixcuneo FuncMethr felixcuneo tryopencpu felixfan FinCal Package for time value of money calculation, time series analysis and computational finance felixfan PubMedWordcloud create word cloud using the abstract from PubMed felixfan powerAnalysis Basic functions for power analysis and effect size calculation. felixhaass rainfall R package to download average monthly rainfall levels for countries, 1901-2015 felixhaass recodepolity This R package applies the corrections to the Polity coding according to Vreeland (2008) and Plümper & Neumayer (2010) felixleungsc fetchUCI felixleungsc morphel Morphing between model definitions felixsungod ImpliedVol Implied Volatility of Option on Future feng-li flutils Feng Li's home-brew R functions fenghelian pack1 fennerm bamReadcountUtils R package which provides utilities for reading bam-readcount files into R fennerm fen.R.util Misc. personal R utility code fennerm pmultinom R package for computing the multinomial cumulative distribution function (CDF) feralaes dampack R package with useful functions to develop and analyze decision-analytic models fergustaylor openprescribingR A set of tools for loading openprescribing.net data into R. fergustaylor openprescribingRplots A set of functions for loading openprescribing.net data into R graphics. fernandabruno musixmatchR Wrapper written in R for getting metadata from Musixmatch. fernandomayer FishMaps Levelplot mapping for fishery data in batch mode fernandosm hybridModels fernandovmacedo ggmapofbrazil fernandovmacedo samplePackage samplePackage R package for coursera class fernote7 INFLATION fernote7 InFeR fernote7 Infer fernote7 Inflation fernote7 aula aula de R fernote7 ecoseries function to capture BACEN, Ipeadata and Sidra series using their APIs fernote7 ecoseries2 fernote7 inflation fernote7 rnmethods fernote7 series.bacen function to capture BACEN series using the API ferreira-santos metaforGUI Graphical User Interface (GUI) for the R metafor Package ferreira-santos neuronic2eeglab ferroao customplots ferroao filteraccuritables accuri cytometer filter ffeng23 ADASPR Analyzer of Distributed Affinity by Surface Plasmon Resonance ffeng23 ARPPA an R package for Protoarray Analysis ffeng23 PAST An R project for ProtoArray Analysis Software Tool, by Feng @ BU ffeng23 SPRATS SPR Analyzer of a Two State Model ffilipponi rtsa R package for Raster Time Series Analysis fgailly BPS-package R Business Process Simulation package fghjorth foreignmoney fghjorth hjorthr A package with Frederik Hjorth's personal R code fgoral goeveg Functions for Community Data and Ordinations fguilhaumon mmSAR mmSAR next iteration fguinot BioptimineR Perform factorial analysis for datamining fgwinner LEANR Implements the method described in "Network-based analysis of omics data: The LEAN method". Given a protein interaction network and a list of p-values describing a measure of interest (as e.g. differential gene expression) this method computes an enrichment p-value for the protein neighborhood of each gene and compares it to a background distri… fhernanb GHQp Gauss Hermite Quadrature with pruning fhernanb cub R package to fit cub models using maximum likelihood method fhernanb cubm R package to fit cub models using maximum likelihood method fhernanb model Package with useful functions for modelling data fhernanb mytools This package has useful tools fhernanb shiny_binomial fhirschmann knitron Use IPython and matplotlib in knitr! fhlsjs Super-delta This project develops a robust gene expression data normalization and differential expression analysis pipeline, dubbed as super-delta. fhpinto autoBagging autoBagging: Automated Bagging Workflows with Metalearning fickse mesowest Simple R functions for working with the Mesowest / SynopticLabs climate data API fickse pathkeeper fidadoma scanpatterns R package for analysis of scan patterns filipstachura calheatmapr filipstachura lambda Very basic lambda functionality in R filipstachura mailgunner Package for using Mailgun API directly from R filipstachura pocketr filipstachura rappsilon filipwastberg meltwateR R Client for Meltwaters media monitoring API filosi nettools R package for network analysis fineiskid fineiskid.github.io fineiskid scdlintrend Repo for Effect Sizes in SCD Studies with Trend analysis finite2 Eurosarc_bayes The EurosarcBayes package finite2 dataCleaning An experimental data cleaning package for R finite2 peter.utilities A bunch of useful functions finite2 phaseOne A phase one simulator (somewhat experimental) finite2 robustToxicities Robust toxicity programs for R finite2 trialSim A work in progress framework for design of trials by simulation finlaycampbell WhatsAppR Visualising WhatsApp conversation data finlaycampbell gensig Simulating genetic signatures of transmission events fintzij BDAepimodel Tractable fitting of stochastic epidemic models via Bayesian data augmentation. fintzij ECctmc Simulating sample paths for endpoint-conditioned continuous time Markov chains. fintzij augSIR Estimation of SIR epidemic parameters via Bayesian data augmentation. fintzij stemr Fit Stochastic Epidemic Models via Bayesian Data Augmentation fisabio fisabior Paquete de R para estadísticos de FISABIO fisabio medear fisabio pbugs fischer-fjd RconTroll R package for individual-based forest growth simulator TROLL (wip) fischuu GCbinner fischuu GeneticTools The R-package GeneticTools is a loose collection of tools for the analysis of expression and genotype data, currently with main focus on eQTL and MDR analysis. fischuu GenomicTools This Package is the continuation of the genomic analysis tools part of the GeneticTools package fischuu Luke Collection of smaller helper functions. fischuu OjaNP Multivariate Methods Based on the Oja Median and Related Concepts. fischuu REPPlab An R Interface to EPP-lab fischuu gMWT Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots fischuu hoardeR R-package for information retrieval from NCBI databases, with main focus on Blast. fish-ecol fish.ecol iucn_index package repository fishsciences cfs.misc Miscellaneous convenience functions fishsciences fishpals A package to generate fish color palettes fishvice husky functions made in a size for the larger or heavier than average boy fishvice pax a resuscitation of an old name - but not necessarily doing the same fishvice tidyices tidy ices stuff fizlaz DUN DUN R package fjeze thesis fjohan brocolors-jf fjukstad boots @3inar's bootstrapper fjuniorr combination Methods to perform combination of forecasts fjuniorr cornell Cornell Notes in Rmarkdown fjuniorr dsa Tools to perform Debt Sustainability Analysis fjuniorr ffeb Pacote para auxiliar os Estados Brasileiros na previsão de receitas fjuniorr junior2017 Fiscal data for Brazilian Subnational Governments fjuniorr misc Miscellaneous personal R functions fjuniorr pkg No description or website provided. fjuniorr siconfi Acesso aos dados do Sistema de Informações Contábeis e Fiscais do Setor Público Brasileiro fkeck editheme Palettes and graphics matching your RStudio editor fkeck oviz Maucha diagrams with R fkeck phylosignal Exploring the Phylogenetic Signal in Continuous Traits fkeck rleafmap Interactive maps with R and Leaflet fkeck subtools Manipulate Subtitles in R flagroth j1071 Modificación e1071. Permite establecer número de iteraciones. flahn openeo-r-backend A reference implementation for the openEO core API as a proof-of-concept flahn openeo-r-client flahn scidbst R package for handling spatio-temporal arrays with SciDB and scidb4geo flajole MApckg MApckg flajole MSdata flaneuse frontier An R package for importing, manipulating, and visualizing spatial information flaneuse geocenter An R package for importing, manipulating, and visualizing spatial information flaneuse llamar Custom reusable plotting functions in R flaneuse svywrangler Helper functions for wrangling surveys flashxio FlashGraphR The R interface of FlashGraph flashxio FlashR-learn The machine learning library on top of FlashR. All machine learning algorithms are implemented completely in R. Most of the implementations are ported from other R packages. flashxio knorR R bindings for knor flaviobarros IQCC Quality Control R package flaviobarros exams Public repository with development version of exams package. flaviobrito RDataAudit RDataAudit is a R Package. It enables you to quickly collect and process data flaviobrito RMoodle Data Analysis using Moodle's data flbourgeois nucleation nucleation analysis toolbox for microfluidics flinder NetworkInference R interface to the netinf algorithm floasdf finalAssignment floatofmath adaperm floatofmath blindConfidence Simulation of estimation after blinded interim analysis floatofmath bt88.03.704 Utility functions of personal use floatofmath casino r-package for simulation and stochastic optimization floatofmath orQA floatofmath resamplingMCP r-package for resampling graph-based multiple comparison procedures flogabriel prfaflo misc functions for the programming R for analytics course flor3652 BigD D ideas flor3652 myStuff A package that includes some useful functions florian0512 SarlaccSeq florian0512 sarlacc The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment. florianerhard lfc R package for modelling count ratio data floriang89 mlcs floriang89 test florianock logrify R functions for flexibly handling many different types of log files floswald ArmaUtils floswald ArmaUtils2 successor to ArmaUtils floswald EconData R package containing a host of datasets useful for economic research. Complete with raw data and cleaning functions. floswald GSLtools tools for bankruptcy project for RcppGSL floswald gridR grid maker for R floswald psidR R package to easily build panel data sets from the PSID floswald umod discrete dynamic programming module from R to C++ flovv Roxford R Package for Image Recognition with Project Oxford flow-r flow_creater flow-r flow_creator flow-r ngsflows flowforest flowforest Generalised Random Forest variant which can directly process flow cytometry data floybix latticist Exploratory Visualisation GUI in R floybix playwith Interactive plots in R using GTK+ flr FLAssess Basic support for FLR Stock Assessment method packages flr FLBEIA Bio-Economic Impact Assessment of Management strategies using FLR flr FLBRP FLR package for Reference Points and Fisheries Advice flr FLCore Core package of FLR, fisheries modelling in R flr FLData Data sets and methods to simulate data flr FLEDA Develops several procedures to explore fisheries data through data tranformation and plotting flr FLFishery Draft of classes and methods for simpler fleet/fishery modelling flr FLFleet The FLFleet package for modelling of fishing fleet dynamics flr FLRDynState Two-species Dynamic State Variable Model in FLR flr FLSAM FLR version of Ander Nielse's SAM stock assessment model flr FLXSA The FLXSA package flr FLa4a The repository for the JRC initiative on stock assessment flr FLash The FLash package for fisheries forecasting flr SQLiteFL FLR package for storing S4 classes in an SQLite database flr diags diagsnostics for stock assessment methods flr ggplotFL The FLR - ggplot2 interface package flr kobe Kobe advice plots for tuna RFMOs flujoo cclean flujoo timeReaper fluscape fluscapeR An R package to help with the reproduction of results from the fluscape project (www.fluscape.org). flyeye Fars flyeye earthquakes flyeye sensors flyingfox22 ShinyWebApp No description or website provided. flythings R flywheel-io r-sdk R SDK fmatano soccR fmgarciadiaz PortalHacienda Interfase en R para acceder al API del Portal de Datos del Ministerio de Hacienda fmhk23 licenselist Get license information from all installed R packages. fmichonneau chopper chopper -- an R package to manipulate DNA alignments and data preparation for phylogenetic analyses fmichonneau chromploid chromosome number and ploidy change evolution in R fmichonneau cipresr 🌳 an R client to the CIPRES REST API (CRA) fmichonneau foghorn :loudspeaker: :ship: R package to summarize CRAN Check Results in the Terminal fmichonneau labmanager A personal lab management system in R (and shiny) fmichonneau phylobase An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data fmichonneau phyloch A git repository for Christoph Heibl phyloch R package fmichonneau picasar 📷 A minimal interface to Google Picasa API (to generate jekyll-compatible photo galleries) fmichonneau riceware An implementation of the Diceware method to generate passphrases using R fmichonneau rncl An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data fmichonneau rsowh rsowh -- an R interface to perform the SO-WH test using RAxML and seq-gen fmichonneau scanr :dart: Scan your R files to look for your functions fmichonneau starbeastPPS setting up git repo for starbeastPPS fmichonneau us-natural-history-collections fmikaelian marketeR The R package for online marketing analysts fmlove tracerutils fnbn cachifyR An R package to make a function use a cache fnoorian fnoorian.github.io fnoorian gramEvol Grammatical Evolution for R fnoorian mltsp An R package for machine-learning based time-series prediction fnoorian quadprogpp Quadratic Programming++ for R focusenergy GroveR Hierarchical dependency management of objects in R, a la "make" folland87 firstpackage foramashar fashaR R package with my functions forestgeo bci16eg Example data from BCI, 2016 forestgeo bciex Easy access to data for examples -- from Barro Colorado Island, Panama. forestgeo ctfs Version of forestr with original functions from CTFS with some improvements. forestgeo demography Recruitment, mortality and growth. forestgeo fgeo R packages to analyse forest diversity and dynamics forestgeo fgeo.abundance Tools for the Analysis of Forest Dynamics forestgeo fgeo.demography Recruitment, mortality, growth forestgeo fgeo.tool Utility Tools for ForestGEO Packages forestgeo fgeo.utils Utility Tools for ForestGEO Packages forestgeo forestr Tools for the Analysis of Forest Dynamics forestgeo map Map ForestGEO's data forestgeo pkg A template package to build safe and reliable research projects. forestgeo qcr qcr provides tools for Quality Control Review of fieldwork data forestgeo soilkrig Krig soil data as per John et al. (2007). forestgeo test test pushing from one local repo to two remotes, one public and one private (test and test-private) forestgeo try Try new code before it is released. foreverycc AlleleSNP_Package R package of allelesnp forkonlp DNH4 다음 뉴스 수집을 위한 도구 forkonlp N2H4 네이버 뉴스 수집을 위한 도구 forkonlp WikisourceR 위키문헌(Wikisource)의 문서를 가져와 사용하기 위한 R 패키지 forkonlp presidentSpeechKr formidify BayesSenMC R package for accounting for misclassification with Bayesian methods formulatehq deployer fortunatobianconi methylkit Automatically exported from code.google.com/p/methylkit forwards forwards forwards wir Package for producing gender summaries fou-foo hope1 fountainer EigenReg Eigenvalues regularized inverse covariance matrix estimation fountainer fountainr Learning how to write R package fountainer ptools tools for empirical study in portfolio optimization. For my own use. fountainer rollapply Learning how to use Rcpp fozy81 NBN4R This is a project to enable the R community to access data and resources hosted at National Biodiversity Network (NBN) Atlas. The goal is to enable outputs (e.g., observations of species) to be queried and output in standard formats. fozy81 bikr mypackage fozy81 policy R markdown policy document demo fozy81 rdatamill fperraudeau gphmm Generalized Pair Hidden Markov Chain Model (GPHMM) frabas displaceplot R package to help producing plots from DISPLACE simulation output files fraenzi carcass Functions for fatality estimations - the actual version of the r-packages carcass fragilefamilieschallenge r-package R package for accessing Fragile Families metadata fragla acreular frajaroco SOAstpp Second-order analysis for anisotropic spatio-temporal point process data frajaroco cdcLISA Cluster detection and classification through of the second-order product density LISA functions frajaroco msfstpp Mark summary functions for spatio-temporal point processes frajaroco mvstpp Mark variograms for spatio-temporal point processes frajaroco pdLISTA Spatio-temporal cluster detection and classification through product density LISTA functions frajaroco scdcLISA Sptial cluster detection and classification through LISA functions franaguila DSCI_524-travis-r franapoli gep2pep Gene Expression Profiles to Pathway Expression Profiles conversion and analysis franapoli pbarETA R txtProgressBar with Estimated Time of Arrival franapoli qep franapoli repo The Data-Centered Data Flow manager for R francescojm CELLector francescojm CRISPRcleanR Unsupervised correction of gene independent cell responses to CRISPR-cas9 francescojm DR.Lancet Drug Response Led Alignment of Cell Lines and Primary Tumours francescojm FI.GDSC.ANOVA Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures francescojm SLAPenrich Sample Level Analysis of Pathway Alteration Enrichments franciscodavid TranslaSeq Translational Control Assessment from Ribosome Profiling Datasets franciscorichter dmea franciscorichter dmea02 francoisgerard rdbounds Manipulation Robust Regression Discontinuity Bounds Estimation in R francojc langdata An R package containing language datasets frandiego ggart frank113 CMU-Shiny-Server Allow for CMU Stats server to save custom sessions frank113 CMUIntroStats frankRuehle systemsbio Streamlined analysis package for omics-data frankfarach medicaredata R package to make it easier to get Medicare data frankkramer-lab RCX R package implementing the Cytoscape Exchange (CX) format frankkramer-lab mully R package to create, modify and visualize graphs with multiple layers. frankkramer-lab ndexr R client library for NDEx frankkramer-lab rBiopaxParser Parses BioPAX files (BioPAX Version 2 and BioPAX Version 3 are supported) and represents them in R. There is quite alot of documentation available for this package. See the reference manual and the vignette for examples! If you have any questions or suggestions... DONT BE SHY! Mail me! See package description for an email address. frankongre RcppGLM Rcpp based Generalized Linear Model frareb devRate R CRAN package devRate frareb inpdfr R CRAN package inpdfr frbl OnlineSuperLearner frbl airaR airaR - Automatically generated advice for VAR models in EMA studies frc1108 eleveneight Internal R package for team scouting and analysis fredcommo MetProject fredcommo cellExplorer fredcommo nplr fredcommo rCGH R package rCGH - latest version fredericgo MyR fredericgo d3visualizationTests fredericgo myHTMLPage.github.io fredericgo stockr fredericgo word_game_ai fredfeng MorpheusData fredfeng talks fredysiegrist statanacoseq freesci rGWIPS rGWIPS freestone-lab TSExperiment freestone-lab TSLib Analysis tools for timestamped behavioral data in R frenchja SAPATools A package for working with the SAPA Project. frenchja psych frenkg coursera.eq Clean and Plot Earthquakes Data from NOAA Database frenkg courseraeq Clean and Plot NOAA's Earthquakes Database Information frenkg courserafarsfg1 fars functions frenkiboy MyLib frenzy2106 htmlwidgets fresques ggmap a package for plotting maps in R with ggplot2 freyakeyser AQpress Propagule pressure calculation freyasquires noxpro Miscellaneous functions for processing AQD NOx data. freysimon PestR Setup PEST from R freysimon TigR A collection of more or less usefull function for R freysimon TigeR A collection of more or less usefull function for R freysimon ZAMGR R Package of a collection of functions for reading ZAMG raster products freysimon jaguR frictionlessdata datapackage-r An R library for working with Data Package. frictionlessdata tableschema-r An R library for working with Table Schema. friedue Rmagic friend1ws ggseqlogo A lightweight package for generating sequence logos based on ggplot2 friend1ws pmsignature R package for extracting mutation signatures from a list of somatic mutations friendly HistData Data Sets from the History of Statistics and Data Visualization friendly WordPools Classical word pools used in studies of learning and memory friendly candisc Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis friendly genridge Generalized Ridge Trace Plots for Ridge Regression friendly heplots Visualizing Hypothesis Tests in Multivariate Linear Models, http://friendly.github.io/heplots/ friendly matlib Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics, http://friendly.github.io/matlib/ friendly myutil My utility functions for R at startup friendly statquotes Quotes on statistics, data visualization and science friendly tableplot Represents table as semi-graphic displays friendly vcdExtra Extensions and additions to vcd: Visualizing Categorical Data friendsofstrandseq MaRyam frimane SolMultinomClass friveramariani fars fars package: data analysis tool for datasets of the US National Highway Traffic Safety Administration's (Fatality Analysis Reporting System). frlender qnr The missing R functions frmunoz TreeGhats Taxonomic and ecological database of trees of Western Ghats frosinastojanovska Bioinformatics Bioinformatics frousseu BDTREScheck A package for doing checks on the Tree Swallow databases frousseu FRutils Homemade package with useful functions frousseu PathAnalysisCourse Functions for the path analysis course by B. Shipley frousseu rNest A package for backcalculating first egg and fledging dates from nest observations in birds frpinto S2B Specific betweeness package frumentum foodcoop-storage frumentum foodstorage Package with shiny-app for optimizing order cycles in food co-ops frumentum getLoss frumentum testFortran test a package which contains fortran source code fryasdf testRPackage fsando REnpadasiUtils R package containing various minor utilities for the ENPADASI project fsavje Rscclust R wrapper for the scclust library fsavje quickblock Quick Threshold Blocking in R fsavje quickmatch Quick Generalized Full Matching in R fsavje scclust-R R wrapper for the scclust library fschaff Xplorer Convenient Data Exploration fschaff internetworkflow Access Domains and Search Popular Websites Directly from the R Console fschaff websearchr Access Domains and Search Popular Websites Directly from the R Console fschirr Chemische_Prozesse fschirr VirSysMon fschirr VirSysMon_r_package fschirr sampling_r_package fsolt DCPO Dynamic Comparative Public Opinion fsolt dcpo_gayrights Dynamic Comparative Public Opinion fsolt dotwhisker Dot-and-Whisker Plots of Regression Results fsolt icpsrdata Reproducible data downloads from the ICPSR data archive fsolt pewdata Reproducible Retrieval of Pew Research Center Datasets in R fsolt ropercenter fsolt ukds Reproducible data downloads from the UK Data Service fsotoc grtools R package for analysis of perceptual independence using general recognition theory ftyu1234 Aclust clone from tamartsi fulvionedel csapAIH Classificar Condições Sensíveis à Atenção Primária fulvionedel territorio Divisões administrativas e de saúde do SUS fulyagokalp lmmpar functionaldata tDENS Testing version of fdadensity functionaldata tPACE Testing version of fdapace fung1091 DATA607lab funkhou9 breedTools :pig: Tools designed for the interpretation of breed composition from genomic data funkhou9 editTools :mag_right: Detection and analysis of RNA editing evidence from VCF data funkhou9 molbio Simple package for the automation of some experimental data analyses. funkhou9 snpTools miscellaneous tools for working with SNP array data funnell reactomefi R Reactome FI Cytoscape plugin wrapper funnng d3funnel D3-funnel HTML widget for R furore-fhir RonFHIR R on FHIR client fusionet24 SetListR A wrapper for the SetList FM API. To enable easier and quicker analysis of music and artists in R fvafrCU HandTill2001 Official site: https://CRAN.R-project.org/package=HandTill2001 fvafrCU cleanr Official site: https://CRAN.R-project.org/package=cleanr fvafrCU coldr fvafrCU cuutils fvafrCU document Official site: https://cran.r-project.org/package=document fvafrCU documentation fvafrCU fakemake fvafrCU fvarug fvafrCU maSAE Official site: https://CRAN.R-project.org/package=maSAE fvafrCU packager fvafrCU rasciidoc fvgls CampR fvgls NeAtlIBTS R Library for the gears of the Northeastern Atlantic IBTS Surveys fxi jed [ experimental ] implementation of jdorn/json-editor in shiny fxi list2form [ experimental ] implementation of jdorn/json-editor in shiny fxi shinyTour experimental tour/walkthrough/help package for shiny app fxjollois pad Point Anomaly Detection: r package fxjulio slash R package for reparametrized multivariate slash distribution fyue-rms foofactors Make Factors Less Annoying fzwaeustc pcrfn pcrfn g2inR rg2 rg2 g3rv4 soes Un paquete para acceder al dump de Stack Overflow en español desde R gabaligeti routeR gabonNRI gabontreedata gaborcsardi after Run Code in the Background gaborcsardi argufy Declarative function argument checks gaborcsardi ask Friendly CLI interaction in R gaborcsardi baseimports Do we get warnings for undeclared imports from base R packages? gaborcsardi clisymbols Unicode symbols for CLI applications, with fallbacks gaborcsardi conf Persistent Package Configuration gaborcsardi crayon R package for colored terminal output gaborcsardi debugme Easy and efficient debugging for R packages gaborcsardi disposables Create disposable R packages, for testing gaborcsardi dotenv Load environment variables from .env in R gaborcsardi falsy R package for falsy and truthy values gaborcsardi filelock Cross platform file locking in R, WORK IN PROGRESS! gaborcsardi fswatch Watch a File or Directory for Changes gaborcsardi gh Minimalistic GitHub API client in R gaborcsardi gitty Git commands from the R console gaborcsardi httrmock Mock HTTP requests, WORK IN PROGRESS, DO NOT USE IT! gaborcsardi keypress Read individual keys in R without waiting for an ENTER gaborcsardi keyring :closed_lock_with_key: Access the system credential store from R — :warning: WORK IN PROGRESS! gaborcsardi liteq Serverless R message queue using SQLite gaborcsardi macBriain Say error messages aloud on a Mac, including advice :) gaborcsardi maxygen ❗️ OUTDATED Markdown + Roxygen = Maxygen gaborcsardi notifier Cross platform desktop notifications from R gaborcsardi parsedate R package to parse dates given in arbitrary formats gaborcsardi pingr R package to ping, over TCP as well gaborcsardi pkgconfig Private configuration for R packages gaborcsardi playground First line Second line. gaborcsardi praise Praise useRs when they have done something good, or when they just need it gaborcsardi prettycode Syntax highlight R code in the terminal gaborcsardi prettyunits Pretty, human readable formatting of quantities gaborcsardi process Execute and Control System Processes from R gaborcsardi processx Execute and Control System Processes from R gaborcsardi progress Progress bar in your R terminal gaborcsardi prompt Dynamic R prompt gaborcsardi rcorpora R package with a collection of small corpuses of interesting data, from https://github.com/dariusk/corpora gaborcsardi readline Read a line from the console gaborcsardi secret :closed_lock_with_key: Secure sharing of sensitive information in R packages gaborcsardi spark Sparklines in the R terminal gaborcsardi tamper Easier debugging of magrittr pipes gaborcsardi tracer Slick call stack traces gaborcsardi webdriver WebDriver client in R gaborcsardi whoami Username, full name, email address and GitHub username of the current user gabriel-slima nkmodel Kauffmann's NK-model implementation gabrielbouleau mangal.package gabrielhoc Mapinguari Repository for development of the Mapinguari R package gabriellajg ClussCluster This package implements a new method ClussCluster to simultaneously perform clustering analysis and signature gene selection on high-dimensional transcriptome data sets. To do so, ClussCluster incorporates a Lasso-type regularization penalty term to the objective function of K-means so that cell-type-specific signature genes can be identified while clustering the cells. gabriellajg equaltestMI This package includes a number of functions for users to examine measurement invariance via equivalence testing along with adjusted RMSEA cutoff values. In particular, a projection-based method is implemented to test the equality of latent factor means across groups without assuming the equality of intercepts. gabrielodom mvMonitoring gabrielodom pathwayPCA A Bioconductor package for extracting principal components from expressed pathways gabrielpreda mesh2D R parser and viewer for 2D mesh file gabrielrega xlsb XLSB R package gabrielrfernandes tagme Taxonomic Assignment of Genetic Markers for Ecology gabrielrvsc ARCO Set of functions to analyse an estimate Artificial Counterfactual gabrielrvsc HDeconometrics Set of R functions for high-dimensional econometrics gabrielrvsc lbvar gabrielrvsc testelasso gabrielzanlorenssi extfunctions Functions for data analysis gabrielzanlorenssi missing Functions to deal with missing data (under development) gabysbrain R-optim-functions A bunch of standard optimization functions for R gabysbrain bearded-hipster gabysbrain git-annex-remote-figshare gacatag IntEREst IntEREst: Intron Exon Retention Estimator gact shmootl gadaviel LumReader R package to simulate a Luminescence Reader gadenbuie mctestanalysis Apps and reports for multiple-choice test analysis in R with Shiny gadenbuie shart shart: Smart Home Analysis in R Tool gadenbuie sqrrl 🐿 Utility Functions For Building SQL Queries gadenbuie sqrrrl 🐿 Utility Functions For Building SQL Queries gahoo ross Aliyun OSS API Wrapper and Client for R galanisl DisparityFilter Tools for the analysis, visualisation and filtering of complex undirected weighted networks galanisl FunEnrich GO and Pathway enrichment analyses for genes of interest galanisl LinkPrediction Implementation of different classes of link predictors and methods to assess and visualise their performance. galanisl NetHypGeom Tools for the generation, analysis and visualisation of complex networks in hyperbolic space. galder-max GSEAlite Gene Set Enrichment Analysis in R galder-max RPlite R optimised implementation of the Rank Product methodology for differential expression analysis and meta-analysis galen211 msdr-capstone submission for MSDR capstone course galen211 rfars R package for handling NHTSA data on fatal traffic accidents galotalp gpMCMC MCMC sampling from Gaussian Process Posterior galuardi SatTagSim Simulating fish tracks from electronic tag data galuardi analyzepsat Automatically exported from code.google.com/p/analyzepsat galuardi boaR Belkin O'Reilly Algorithm galuardi hmmwoa hidden markov model for psat data v.0 galuardi jpegs2movie galuardi vmstools gamalamboy stresstest A repository to maintain some code I have been working on gammarama intRo Shiny-based statistics learning application gangwug MetaCycle An integrated R package to evaluate periodicity in large scale data gangwug MetaCycleV100 MetaCycle version 1.0.0 gaoce raddins A repo for some rstudio addins gaofeng21cn DeepCC DeepCC: a deep learning-based framework for cancer classification gaofeng21cn gaofenglib Useful R functions gaolong arvin Identifying Risk Noncoding Variants Using Disease-relevant Gene Regulatory Networks gaoming96 MulCatDiag a package for Multi-category Diagnostic Accuracy gaoming96 mcca a package for Multi-category Classification Accuracy gaoming96 sayHello aaa gaow mnmashr Multivariate, multiple regression extension of ASH garciadejalon FlowRegEnvCost An application to calculate the daily environmental costs of flow regulation. garciparedes unifyr R package that unifies function naming to common standards garrettgman DSR Data sets for Data Science with R garrettgman Visual-Inference-Tools A suite of visualization tools that demonstrate the intuition behind statistical inference. garrettgman centering Functions to manipulate data. garrettgman data Data and tutorials for learning data analysis with R garrettgman foo garrettgman ggplyr split data with functions, transform pieces into plot layers, combine in a variety of ways garrettgman ggsubplot Embed subplots in ggplot2 graphics in R garrettgman magrader Experimental code checking tools for tutor tutorials garrettgman modelglyphs Explore data through a gallery of locally fitted models garrettgman shiny-js-tutorials friss shiny js tutorials garthtarr edgebundleR Circle plot with bundled edges garthtarr mplot Model selection and stability plots garthtarr pairsD3 D3 scatterplot matrices garvish datascience Data Science Projects Repository garvish earthquakes NOAA earthquakes package gary-au pt pt: An R package for Prospect Theory garybecker deepforest garyfeng LogLogisticMixture R library for fitting a Log Logistic Mixture model for the distribution of eye fixations duration garyfeng dfat An operator `@` to extract a named member of a list that is in a list and returns a vector. garyfeng pdata Process data analysis and visualization for large scale educational assessments garyganuiuc BayesEM R package (Bayes EM algorithms for Gaussian Graphical Models) garyganuiuc SSLasso Sparse Precision Matrix Estimation with Bayesian Regularization gasparrini dlnm R package dlnm gastonstat AssotesteR R package AssotesteR gastonstat DiscriMiner R package DiscriMiner gastonstat arcdiagram R package arcdiagram gastonstat blockberry R package blockberry gastonstat colortools R package colortools gastonstat cranium gastonstat examiner2 Toy package examiner2 gastonstat matrixkit R package matrixkit gastonstat pathdiagram R package pathdiagram gastonstat pathmox R package pathmox gastonstat plsdepot R package plsdepot gastonstat plspm R package plspm gastonstat plspm2 Prototype package plspm2 gastonstat tester R package tester gastonstat turner R package turner gatescao elliptical gatorBiostat SSKmeans Smooth Sparse Kmeans gauravsk3 odds gaurbans ecm gauzens fluxweb Development of an R pacakge that estimates fluxes in food webs gavinfay BowlBingo gavinfay TMBphase fits TMB models with phases gavinha TitanCNA Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer gavinsimpson analogue Analogue and weighted averaging methods for palaeoecology gavinsimpson analogueExtra Extra features and functions for use with the analogue package gavinsimpson canadaHCD Access Canadian Historical Climate Data from R gavinsimpson cocorresp Co-correspondence Analysis with R gavinsimpson cocorresp-old Cocorrespondence Analysis gavinsimpson coenocliner An R package to simulate species occurences and abundances (counts) along gradients gavinsimpson gavmisc My package of miscellaneous R functions and code gavinsimpson ggvegan ggplot-based plots for vegan gavinsimpson orcid Miscellaneous functions for working with Orcid gavinsimpson pcurve Glenn De'Ath's principal curve package gavinsimpson permute Restricted permutations gavinsimpson roxcal Parse Oxcal output files with R gavinsimpson schoenberg ggplot-based graphics and useful functions for GAMs fitted using the mgcv package gavinsimpson temporalEF Eigenfunctions for time series gavinsimpson tsgam Functions for using GAMs to model time series gazzlab AceScripts Scripts and specific analyses for ACE gbaquer3 fuzzyARTMAP fuzzyARTMAP R package gbartusk tstpkg test R package gbasulto fingerprints R package to analyze fingerprints images from a particular database gbasulto fourierin This is a package to numerically calculate Fourier integrals. gbasulto kerdec R package for kernel deconvolution methods gbasulto mvdeconvolution mvdeconvolution gbasulto solefinder gbearden stellar Handy functions that I use gbhumphrey1 validann validann R package - Validation tools for artificial neural networks gbisschoff ABCModels gbisschoff GeyerRFunctions GeyerRFunctions gbisschoff dCredit gbisschoff dPlatform gbisschoff dbAccountManagement gbisschoff dbDataManagement gbm-developers gbm gbm: the old gbm package gbm-developers gbm3 Gradient boosted models gbonte D2C gbonte gbcode gbonte init gboris bigrf gboris blkbox Data exploration with multiple machine learning algorithms gboris drat gbradburd SpaceMix gcastella EDEreports gcastella predRCT gcastella statTools R package with some functions to create tables and simple statistical analyses. gcfrench pgadminr A package to compliment the management of PostGreSQL when using the PGAdmin tool. gcfrench tallyr A tally counter for use within the tidyverse gcfrench tidyspeciesr A package to explore species records within the tidyverse gchlapinski EternityII EternityII: A brute force type algorithm trying solve this puzzle. gcohenfr pgca gdaher invector R package gdario almacannot Simple functions for the reannotation of Almac and Affy probe sets gdario cameracomp Simple simulations to test the camera algorithm gdario cnvtools Collection of functions for information extraction and analysis of segmented CNV data gdario compareCNVandGX gdario coxph2table Simple function to pretty-print univariate and multivariate Cox regressions. gdario gdamisc Collection of utility R functions for various (mostly bioinformatics-related) purposes gdario python_exercises gdauby ConR ConR gdelangel genomicRTools Miscellaneous tools to handle and annotate VCF data from R/Bioconductor. Includes interfaces with VEP API gdemin antibble gdemin cleanr Tool for cleaning (checking) data from marketing/sociological surveys. gdemin excel.alike gdemin excel.link Convenient Data Exchange between R and Microsoft Excel gdemin expss expss: Tables with Labels in R gdemin expss.tables gdemin labelr Basic SPSS labels support for R functions gdepalma BayesianMonoErrorModels gdepalma StanTest gdepalma SuscTesting gdking01 ScottishHillRacing Data about Scottish hill race results. gdkrmr DRR Dimensionality Reduction via Regression using Kernel Ridge Regression in R gdkrmr coRanking Co-Ranking matrix and derived methods to assess the quality of dimensionality reductions gdkrmr dimRed A Framework for Dimensionality Reduction in R gdlc BGLR-R gdlc dMatrix mmemory mapped matrices for R gdouzas Stacking-SkLearn gdouzas ensembleR No description or website provided. gdupret eplimited wrapper around eplimited R-peak detector to make it accessible from R gdupret wfdb4R wrapper around physionet wfdb library ge-flight-analytics Rems R wrapper for the EMS API ge11232002 CAGEr CAGEr for paired-end reads ge11232002 CNEr Conserved Noncoding Elements (CNEs) Identification and Visualisation ge11232002 JASPAR2016 Bioconductor JASPAR2016 data package ge11232002 JASPAR2018 JASPAR2018 data package ge11232002 NGS Tools for NGS analysis ge11232002 TFBSTools Software Package for Transcription Factor Binding Site (TFBS) Analysis ge11232002 TFMPvalue Efficient and Accurate P-Value Computation for Position Weight Matrices ge11232002 TKF Pairwise Distance Estimation with TKF91 and TKF92 Model ge11232002 latticeExtra Update horizonplot geanders countytimezones geanders futureheatwaves Functions to Identify and Characterize Heatwaves in Climate Projections geanders geanders.github.io geanders hurricaneexposure Functions to Create County-level Time Series of Hurricane Exposure geanders hurricaneexposuredata geanders noaastormevents explore noaa storm database geanders stormwindmodel Model Hurricane Wind Speeds geanders weathermetrics geanes KScollect Purpose-built app to collect data for future inclusion in KidStats. geanes bioanth An R package that provides datasets useful for biological and forensic anthropology. In addition, it includes helper functions for working with dataframes. geanes kidnapr Purpose-built app to collect data for future inclusion in KidStats. geanes kidstats Shiny application to make sub-adult age and sex estimations based on long-bone measurements using MARS and FDA models. geekman1 eva_package This package implements the methodology developed in my PhD research, including the publication(s) listed here. Goodness-of-fit testing for extreme value models, maximum product spacing estimation, data generation for the GEVr model, profile likelihood, etc. gehara PhyNeSiCo gehara PipeMaster An R Package to build and simulate coalescent models gehara codes gelfondjal IT2 gelfondjal adapr next gen ADAP gencgeci1 baseball-stats geneorama geneorama My main functions genesofeve GWCoGAPS genesofeve ProjectR genesofeve Projection genesofeve gWARP genesofeve projectR genesofeve projectoR geneticsMiNIng cr17 Competing Risks with R and ggplot2 geneticsMiNIng metR Pipeline for methylation analysis and visualisation geneva AFLPTools Tools for the curation and analysis of AFLP data geneva POPBAMTools An R package for reading and annotating output from POPBAM geneva spectrum2stats An R package to calculate population genetic summary statistics from site frequency spectra genevievelrobin gammit Package for the analysis of low-rank interaction contingency tables genexplain geneXplainR An R interface for the geneXplain platform genkiFurukawa rSetDayNightAttr gennaro-tedesco Rdice genome aml31Benchmarking genome bmm R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions genome docker-genome-workbench genome sciclone An R package for inferring the subclonal architecture of tumors genomewalker oligo4fun Pre-oligotyping diagnostics for functional genes genomicsclass Dilution genomicsclass ph525x ph525x. functions only, no data genostats FEstim genotyper FunkyTax gentok estvis gentok viseffect geo047 HapSampler A stochastic haplotype sampler that uses phased marker data and trait data to build joint Qtl-marker haplotypes geoffjentry ROAuth OAuth implementation for R geoffjentry RStackExchange R based StackExchange client geoffjentry twitteR R based twitter client geogria QICD QICD package geomorphR geomorph Geomorph is a software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical computing environment. This repository is dedicated to providing beta versions between CRAN uploads george-weingart banocc BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan` georgeberry blaunet R package for computing social distance measures. georgebiogeekwang tempcycles An R package for estimating the magnitudes and biological impacts of temperature variability. georgebiogeekwang tempcyclesdata An accessory data package for tempcycles, including the cycling data from Wang and Dillon 2014. georgegui CommonFunctions_Public georgegui MarketingRegression georgemirandajr identifyr identifyr georgemirandajr pace georgemirandajr presentations georgemirandajr workcell georgeshirreff multiNe geotheory Edison_AP_Setup_notes geotheory dymaxion_jpeg geotheory gridPoints Functions to grid point data geotheory londonShapefiles Useful shapefiles for London gepuro addin4githubinstall gepuro gweibullplot gerasy1987 egap Useful functions for EGAP replication gerasy1987 replicate Tryout for package which allows for systematic replication of social science research gerasy1987 replication Tryout for package which allows for systematic storage of replication materials gerasy1987 usefulr The Package provides number of functions for replication of studies geraudster bagOfWords geraudster firstrepo geraudster modelUtils R utilities for machine learning gergness giphypraise Adds gifs to praise gergness osmar2 Rewrite of the osmar (open street maps) package to be a bit faster. gergness srvyr R package to add 'dplyr'-like Syntax for Summary Statistics of Survey Data germayneng DogEncode germayneng cats test gersonjr RPack Pedigree R Package gerstung-lab deepSNV The official repository for the deepSNV bioconductor packages. Devel is the active development branch, master tracks the official Bioconductor repo. gertjanssenswillen bupaR bupaR is a collection of functions and other packages which can be used for (business) process analysis in R. gertjanssenswillen edeaR R-package for exploratory and descriptive event data analysis gertjanssenswillen petrinetR Functions for the construction of Petri Nets. Petri Nets can be replayed by firing enabled transitions. Silent transitions will be hidden by the execution handler. Also includes functionalities for the visualization of Petri Nets and export of Petri Nets to PNML-files. gertjanssenswillen processmapR R package for creating process maps gertjanssenswillen processmonitR gertjanssenswillen ptR This package provides function to analyse the behavior in a process tree, e.g. estimate the number of execution paths. gertjanssenswillen xesreadR gertstulp ESMvis gertstulp ggplot.gui ggplot.gui gertstulp ggplotgui ggplotgui gertvv hitandrun "Hit and Run" sampler gertvv rsmaa SMAA implementation for R gerwathome runOPM Working with "The Open Porous Media initiative" tools gfarinacci chooseDir Choose A Folder Interactively on RStudio gfarinacci lifeTables The package allows you to easily download personalized Life Tables from the Eurostat website gflcampos dsMice gflcampos dsMiceClient gflcampos dsRegression DataSHIELD server-side functions for regression gflcampos dsRegressionClient DataSHIELD client-side functions for regression gfleetwood techne gforge Gmisc An R package for table creating, plotting and more gforge Greg This R-package provides additional functions that help you convey regression models. It has also a few functions for handling robust confidence intervals for the ols() regression in the rms-package. gforge Grmd Deprecated - package now in Gmisc 1.2. An R package for working with the fast-track-publishing. The package will most likely be fused with the Gmisc package as soon as the rstudio/rmarkdown package has debuted on CRAN gforge comorbidities.icd10 Comorbidities calculator for R using ICD-9 and ICD-10 based scores gforge forestplot Advanced forest plots in R using grid graphics gforge htmlTable An R package for generating advanced tables gfragiadakis FDA-library data analyses for FDA dataset gfragiadakis blackbuck-R-toolkit Tools for interacting with database for mass cytometry immune reference data gfunk0704 CMCValuation Classification Monte Carlo for Bermuda option valuation gfunk0704 FinancialEngineering R Package: "FinancialEngineering". Using Monte-Carlo simulation to value derivative securities gfunk0704 IRModels Interest Rate Models for Monte Carlo SImulation gfunk0704 VBAMatrix ggRaver Lslide ggershenfeld EDAMisc Exploratory Data Analysis Miscellaneous Tools ggershenfeld edamisc Exploratory Data Analysis Miscellaneous Tools gghatano npbOfficialData gghatano retrosheet ggjlab scMCA Mouse cell atlas ggloor ALDEx_bioc ALDEx_bioc is the working directory for updating bioconductor ggobi DescribeDisplay ggobi anypaint Common API for interactive graphics ggobi clusterfly This is a re-working of Hadley's clusterfly package. Dependencies to ggobi are removed, and examples provided that use the tourr and cranvas packages. ggobi cranvas Interactive graphics in R using Qt interfaces, a descendant of ggobi software ggobi ggally R package that extends ggplot2 ggobi ggobi.github.io ggobi mosaiq ggobi objectProperties ggobi objectSignals ggobi objectWidgets ggobi plumbr Mutable dynamic data structures for R ggobi qtbase Dynamic bindings from R to the Qt library ggobi qtpaint Qt-based painting infrastructure ggobi qtutils ggobi rggobi Interface between R and GGobi ggobi tourr A implementation of tour algorithms in R ggobi tourr-gui A gui for the tourr package ggranga RSPrePro Download and preprocess Remote Sensing images ggranga fidolasen FInd, DOwnload and preprocess LAndsat and SENtinel images ggranga sprawl Spatial Processing (in) R: Amorphous Wrapper Library ggrothendieck gsubfn Automatically exported from code.google.com/p/gsubfn ggrothendieck nls2 Automatically exported from code.google.com/p/nls2 ggrothendieck proto Automatically exported from code.google.com/p/r-proto ggrothendieck r-bc Automatically exported from code.google.com/p/r-bc ggrothendieck rmathpiper Automatically exported from code.google.com/p/rmathpiper ggrothendieck rsympy Automatically exported from code.google.com/p/rsympy ggrothendieck ryacas Automatically exported from code.google.com/p/ryacas ggrothendieck sqldf Perform SQL Selects on R Data Frames gherardovarando Rbmop Rbmop package gherardovarando Rbnet Rbnet package ghiggi ProjectTemplate My personal skeleton for R projects ghing elexr R wrapper around elex to load Associated Press election results ghonk catlearn.suppls Supplemental functions encompassing the broad cognitive modeling and machine learning efforts of the LaRC lab. Intended for use with the Catlearn R package ghosoya ludwig giabaio BCEA Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the "reference") to the others ("comparators"). Produces many summary and plots to analyse the results giabaio BCEs0 Bayesian models for cost-effectiveness analysis in the presence of structural zero costs giabaio SWSamp SWSamp is a general purpose package to provide a suite of functions for the sample size calculations and power analysis in a Stepped Wedge Trial. Contains functions for closed-form sample size calculation (based on a set of specific models) and simulation-based procedures that can extend the basic framework. giabaio survHE Survival analysis in health economic evaluation Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation. survHE can fit a large range of survival models using both a frequentist approach (by calling the R package flexsurv) and a Bayesian perspective. For a selected range of models, both… giacomovagni TimeUseR gianba digiter gianluca-sottile clustEff gianluca-sottile qrcmNL gianluca-sottile qrcmPen gianmarcoalberti CAinterprTools R package to help interpreting Correspondence Analysis’ results gianmarcoalberti CAinterprTools_0.10 gianmarcoalberti CAinterprTools_0.11 ver 0.11 gianmarcoalberti CAinterprTools_0.12 ver 0.12 gianmarcoalberti CAinterprTools_0.5 ver.0.5 gianmarcoalberti CAinterprTools_0.6 version 0.6 gianmarcoalberti CAinterprTools_0.7 ver 0.7 gianmarcoalberti CAinterprTools_0.8 gianmarcoalberti CAinterprTools_0.9 ver 0.9 gianmarcoalberti CAseriation ver 0.1 gianmarcoalberti CAseriation_0.2 new version gianmarcoalberti GmAMisc Gianmarco Alberti Miscellaneous giannilmbd NonOverFun Applies a function to non-overlapping windows giantoak goarima R package for opencpu giantoak ijulia_tutorial giantoak mmppr R package for Markov-Modulated Poisson Processes (MMPP) giantoak multiscale_graph_analytic giantoak phonebook gibbslab coexnet An R package to build CO-EXpression NETworks from Microarray Data gibbslab ex2flux An R package to convert expression data to FBA fluxes gibbslab exp2flux An R package to convert expression data to FBA flux bounds gibbslab g2f An R Package to Find and Fill Gaps for Genome-Scale Metabolic Networks gibbslab minval An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction. gibonet comuniTI gibonet decr gibonet distrr gibonet ggswissmaps R package gibonet gibr R package gibonet tidy2px gibonet tidy2spatial giby Linarius Linarius devlopment R Package for dominant marker analysis with mixed ploidy levels giguerch CUFF R Package: Charles's Utility Function using Formula (CUFF) giguerch mmeln Estimation of Multinormal Mixture Distribution gilbertocamara sits satellite image time series package for R gilinson hillmakeR R package to perform occupancy analysis gilleschapron TSstats gilleschapron TStools No description or website provided. gilligan-ees-3310 kaya-tool Shiny tool for exploring Kaya identity gilligan-ees-3310 kayadata Package to load Kaya Identity data. gilligan-ees-3310 kayatool Shiny tool for exploring Kaya identity ginagruenhage cmdsr ginnyintifa PTMscape ginolhac bifag ginolhac cassign ginozab Rmspredict No description or website provided. ginozab mspredictr giocomai castarter castarter - Content analysis starter toolkit for R giocomai castarterSocial Extension to the 'castarter' package for R adding integration with packages focused on extracting contents from social networks. giocomai zoteroR Access the Zotero API in R giopresti todsWP Tod's BIR project --- widows performance giraola taxxo Integrating and automatising tools for prokaryotes taxonogenomics girke-lab ChemmineOB OpenBabel wrapper package for R girke-lab ChemmineOB-release bioconductor 2.14 girke-lab ChemmineR Cheminformatics Toolkit for R girke-lab ChemmineR-git-svn-bridge This is defunct, now replaced with https://github.com/girke-lab/ChemmineR girke-lab ChemmineR-release bioconductor version 3.1 girke-lab eiR Accelerated similarity searching of small molecules (bioconductor package) girke-lab eiR-release bioconductor version 3.1 girke-lab fmcsR Mismatch Tolerant Maximum Common Substructure Searching girke-lab fmcsR-release bioconductor version 2.14 gisler concs2loads River load estimation gisma aRps Analyzing and visualizing ARPS model data gisma glimpse gisma link2GI gisma parseSpeciesList first prototype to parse running beetle species lists gisma perfectPeak Introduction in spatial thinking ... and learn how to script it gisma pmQGIS gisma robubu the rolling burning bus gisma uavRmp Unmanned Aerial Vehicle R based Mission Planner gisma uavRst Unmanned Aerial Vehicle Remote Sensing Tools git05 saraminR gitdek Roanda R implementation for OANDA gitdek elliotwave github-js BayesESS github-js acc Acc package for processing, visualizing, exploring, and analyzing accelerometer data github-js ess githubmpc marimba2 gitlongor MRPP gitlongor QuasiSeq gitlongor hisemi gitlongor partitions.aux gitlongor pi0 gitlongor uniqueAtomMat gitlongor varComp gitrays pdmk Personal Decision Making (pdmk) gitrman itns Introduction to the New Statistics datasets gitronald IPtoCountry Convert IP Addresses to Country Names or Full Location Details With Geoplotting gitronald IPtoCountry_archive Convert IP addresses to country names in R gitronald InternetPenetration World Bank Internet Penetration Data Visualization (Internet Users) gitronald computer-config gitronald demotables Simple descriptive frequencies and statistics in R gitronald dtables Simple descriptive frequencies and statistics in R gitronald files Effective File Navigation from the R Console gitronald htester Convert htest lists into data.frames gitronald ip2locationData Expanded IP to location dataset from ip2location.com gitronald ip2location_data Expanded IP to location dataset from ip2location.com gitter-lab LPC Short Time Series Clustering Using Lag Penalized Correlation gitter-lab LPWC Short Time Series Clustering Using Lag Penalized Weighted Correlation gitzhuoer bisecpp General-purpose Optimization using enhanced bisection method gitzhuoer pgs Population Genetics Simulation giupo EscapeBuiling giupo GrafoDB Simple ETL for R giupo RPostgreSQL2 Additions to RPostgreSQL2 giupo qt_r_integration QT-R-Integration: offers a POC on how integrate a UI entirely written in C++/QT within R interpreter if you don't want to use other valuable solutions giupo rcpp_test giupo rdataset Simple timeseries container for R giupo rprogressbar ProgressBar per R giupo rutils giupo testCovrPackrat Thesting Packrat and Covr giuseppec MCMCm giuseppec RBPcurve gjabel agesched Demographic Age Schedules for Decomposition gjabel demoproj Demographic projection models gjabel fanplot Visualisation of sequential probability distributions using fan charts. gjabel migest Methods for the Indirect Estimation of Bilateral Migration gjabel tsbridge Calculate normalising constants for Bayesian time series models gjabel tsbugs gjahesh course_lectures gjahesh foofactors Make Factors less annoying gjahesh sunsetrise Creates a sunset_sunrise calender gjm112 AUCCI Confidence intervals for AUC gjm112 MixMAP The MixMAP package gjm112 STAT337 gjm112 predTooth Predict the Species and Tribe of a tooth gjm112 rPQI gjuggler ape A mirror of ape - R package for phylogenteics gjuggler ggphylo Phylogenetic plots for R and ggplot gkapfham virtualmutationanalysis Replication Package for the AST 2016 Paper Presenting the Virtual Mutation Analysis Technique gkeele CCexplore gkeele DIDACT gkeele Diploffect.INLA gkeele diplolasso gkeele kqtl gkeele miqtl gkeele sparcc Simulated Power Analysis in the Realized Collaborative Cross gkobeaga opentraffic-r gladex COPAR ChIP-seq Optimal Peak AnalyzeR gladex PanCanMAP Pan-Cancer DNA Methylation Analysis Package for ENCODE glaggle cadR R package collecting functions used in glaggle/cats_and_dogs glalcala ejercicio4 glennSanders fourStrokeSim glennmschultz BondLab Bond Lab is a suite of software for the analysis of fixed income securities. glennmschultz BondLabDownload Download Functions for BondLab glennmschultz BondLabStructuring Structuring Module for BondLab glennmschultz bondlab-download glibiseller IPO A Tool for automated Optimization of XCMS Parameters - See vignette/IPO.Rmd for help glotaran paramGUI paramGUI is a Shiny based R-package for teaching parameter estimation examples inspired by time-resolved spectroscopy gluc ahp Analytical Hierarchy Process (AHP) with R gluc data.tree General Purpose Hierarchical Data Structure for R gluc datalicenseR An R package to download prices from Bloomberg Datalicense gluc datap Configurable Data Pipes R Reference Implementation gluc datapR Configurable Data Pipes R Reference Implementation gluc libdes Libdes for integration with Bbg gmadevs RcmdrPlugin.advanstat RcmdrPlugin.advanstat gmatt18 bcs Implements the fast Laplace algorithm for Bayesian compressive sensing gmaubach rToolbox R Toolbox gmbecker DynDocModel Document Model for Non-Linear Dynamic Documents (in R) gmbecker ProteinVis gmbecker RBrowserPlugin Firefox Extension and R package to embed R in Firefox, including bi-directional communcation between javascript and R gmbecker RCacheSuite A suite of caching tools for use in R, particularly when processing dynamic documents gmbecker S4Coffee S4Coffee is a roxygen-like framework for declaring classes, generics, and methods for the S4 object system in R via comments and then automatically generating the code that implements them. gmbecker bibTools The bibTools R package provides a number of tools for dealing with bibliographic information in R, including transforming between formats, querying entries present in a document, and even verifying the contents of bibliographic entries and correcting mistakes. gmbecker fastdigest R package for using Bob Jenkin's streaming SpookyHash algorithm in-place within R's serialization machinery. Generates 128bit digests of R objects without creation of full serialized copies. gmbecker firepaint A RFirefox-based backend for the anypaint framework to draw interactive R graphics into live webpages using HTML canvas tags gmbecker gRAN Repository-based tools for reproducibilty at the system-wide installation and individual analysis levels for R gmbecker histry Enhanced code history tracking for R sessions and dynamic documents. gmbecker recordr The trackr R package enables Discoverability and enhances reproducibility by generating automatic provenance and semantically descriptive metadata for R plots and objects. gmbecker rigbLite Send instructions to IGB session from R gmbecker rpath An R package implementing xpath-like functionality for querying R objects gmbecker switchr An R package for managing and seamlessly switching between sets of installed R packages. gmbecker switchrGist A small plugin for the switchr R package allowing users to publish manifests as gists gmculp rGBAT16AB Using NYC DCP's geocoder from within an R package gmellon neaR package for geoprocessing and creating metrics for arts data gmelloni LowMACA git version of LowMACA Bioconductor package gmiskell CrossAutoFunctions sets up data for cross or auto analysis, along with various functions to be used gmiskell Cross_Auto_Functions sets up data for cross or auto analysis, along with various functions to be used gmlang RAirbnb Another R wrapper of Airbnb API, inspired by Rbnb. gmlang RGurunavi A R wrapper of the API of Gurunavi (https://www.gnavi.co.jp) gmlang RTabelog A R scraper for Tablelog (https://tabelog.com) gmlang ezplot A R package that allows you to make commonly used statistical charts easily and quickly. All plots are made using ggplot2. gmlang imdb An interactive app of exploratory analysis on 5944 films (1913 - 2014) obtained from the imdb.com gmlang loans This package contains various loans datasets that I use in my books gmlang phph An app that runs the Cox, PO, and PHPH model to investigate the effect of radiotherapy on breast cancer development for patients with Hodgkin disease. gmonaie LinnisSettles gmonaie Quant gmonaie mypackage gmonaie repo2 gmonaie zerotohero gmonette HG A package for the HG team gmonette Tcells gmonette Tcells2 Tcell dynamics with mixed models and with STAN gmonette WWCa gmonette gmisc R package of new functions gmonette nlmeYextra gmonette p3d Visualizing statistical models in 3d gmonette spida R package collection of tools for hierarchical and longitudinal data analysis--obsolete: use spida2 instead gmonette spida.beta gmonette spida15 Branched from spida in November 2015 using roxygen2. Use 'spida2' which is the stable version. gmonette spida2 New version of the 'spida' package developed for the Summer Programme in Data Analysis at York University 2000 to 2012 gmonette spidanew new functions for spida gmonette surveygmds Stratification functions for datassisst gmonette testrep To test and practice collaboratio gmonette yscs Collection of tools used in the Statistical Consulting Service at York University gmp26 cljs_widgets An R package containing example htmlwidgets written in clojurescript gmp26 funnel Provides an R function to plot mortality rates in funnel or slice form gmp26 mywidget test R widget gmp26 rcljsdemo R funnel plot package (in development) gmp26 rectangleWidget A simple htmlWidget which draws squares or rectangles gmp26 rpackage a small R package boilerplate gmp26 shiny-funnel-app developing a funnel plot inside a shiny app gmweaver RPackageTest gmweaver hierr An R Package for Hierarchical Regularized Regression gmweaver hirr hirr: R Package for Hierarchical Regularized Regression gmyrland fduper The scriptable file deduper (R package) gnapham shortcuts shortcuts is an R package for circumventing common, cumbersome base R operations gnardin stationarity gnardin uidaho Demo R package gndaskalova TeamShrubR gndaskalova grabr This is the repository for the EAB Hackathon group working on a package to download and harmonise gridded datasets. gnetsanet LDLC gnorato mypkg This is a test package for advdatasci gnyamundanda PhenMAP gnyamundanda exploBATCH gnyamundanda intPredict Pipeline for gene selection and class prediction to identify robust genes gnyamundanda sma Contains functions to perform DLDA and DQQDA classifiaction procedures go-ski pbdIO An interface to parallel input output packages with a focus on Single Program/Multiple Data ('SPMD') parallel programming style, which is intended for batch parallel execution. go-yohan sppcredit understanding credit calculation in Southwest Power Pool Market and analysis of the proposed calculation. goat-anti-rabbit labelpepmatch.R labelpepmatch gobbios EloRating gobbios EloRating2 gobbios TESTpack gobbios cfp gobbios socialindices gobics mPathy Ultrafast pathway reconstruction from metagenomic and metatranscriptomic reads gobics meander R package for differential expression analysis of metatranscriptomic count data godwinyung mmsurv Multiple measures for the comparison of two survival curves gofflab cummeRbund-BioC-Bridge gogleva SecretSanta flexible pipelines for scalable secretome prediction, R package gogonzo oddsandsods miscellaneous functions to ease-up an everyday work with R gokcemay trib An R Package for tribology analysis gokmenzararsiz MLSeq Machine Learning Interface to RNA-Seq Data goldingn BayesComm goldingn GRaF Species distribution modelling using Gaussian random fields goldingn auto my automated checks for R packages goldingn default change the default arguments in R functions goldingn gpe Gaussian process everything - an R package to reimplement and combine common statistical models using GPs goldingn gpflowr :blossom: Gaussian processes in TensorFlow via R :blossom: goldingn greta simple and scalable statistical modelling in R goldingn pop A Flexible Syntax for Population Dynamic Modelling 🐨 📈 goldingn ppmify convert your Poisson regression into a Poisson point process model goldingn versions Query and Install Specific Versions of Packages on CRAN goloviznin1995 dogs goloviznin1995 mvtsex Easy interface for feature extraction from multidimensional time series, yet another xgb-wrapper. gomulki Snowfall developing and R package gongliyu csvfR A pure R package to handle large csv file: split, merge, read/write row by row gongx030 dpath Quantitative assessment of progenitor and committed states in single cell transcriptomics gongx030 scDatasets Processed single cell RNA-seq datasets gongx030 tcm TCM visualizes trajectories and cell populations from single cell data good-marketing RGhost R Api wrapper for blogging platform ghost. good-marketing Readibility R Package for Readibility.com Parser Api good-marketing sparkNLP good-marketing sparkNeo Access Neo4j on Spark from R goodamr FARS goodekat ggResidpanel An R package for creating a panel of diagnostic plots for residuals from a model. google CausalImpact An R package for causal inference in time series google GeoexperimentsResearch An open-source implementation of the geo experiment analysis methodology developed at Google. Disclaimer: This is not an official Google product. google MAB R package for Multi-Armed Bandit Simulation Study google NLSdata google YouCompleteSubl google abpackage An R package for AB testing leveraging pre-period information google amss google auto-common google auto-factory google auto-service google beta-binomial-fitting google certificate-transparency-java google citizen-x google course-builder google coursebuilder-learning-analytics google deliberate google emre google favcolor-ios google flooefi google gdal-autotest2 google gin google github-owners-bot google gitkit-ruby google gitwf google glassbox google glmmplus google go-glicko2 google go-shlex google google-empty-test-module google gotrace google jenkins-flaky-test-report google jsontoken-tmp google kv-s3105c google network-visualizer-x google organ-donor-app google photo-sphere google physical-web-core google pubsubhubbub google reboot-somalia google rfmt R source code formatter google s2-geometry-library google sass_generator google sirius google stagehand-console-full google stagehand-package-simple google stagehand-server-appengine google stagehand-server-shelf google stagehand-web-angular google stagehand-web-full google stagehand-web-polymer google stagehand-web-simple google typed-data-pkg-dart google yang_vocoder goranbrostrom eha eha goranbrostrom eha2 goranbrostrom idsr Creates an episodes data frame goranbrostrom sweden14 Swedish Population Data 1969-2014 gordonwoodhull tl2010 R package for census tiger/line shape data gorillayue RIPSeeker gorodnichy sleepifier R code for building sleepifiers (data visualization and plotting using ggplot2 extensions) gorodnichy songbook Bookdown: Archive of songs and poetry using D7 package goseberg samplesizr Sample size calculation with R gosianow PasillaTranscriptExpr No description or website provided. goto4711 scaddh gottalottasoul zipcarFunctions common functions I use for analysis in R for zipcar gowusu sebkc sebkc: Surface Energy Balance and Crop Coefficient Estimation with R gowusu vadose Estimations of soil water characteristics in the vadose zone gpapadog DAPSm Distance Adjusted Propensity Score Matching R Package gpapadog Interference IPW estimators of causal effect estimands in the presence of interference gpaux Mediana Clinical Trial Simulations gpoudel JobsInR An R package to extract information from popular job site indeed.com gpuRcore gpuRNN gpuRcore gpuRclblas gpuR extension to use the clBLAS library gpuRcore gpuRcuda CUDA GPU functions for R Objects gqi hipo Heritability Informed Power Optimization (HIPO) grady evol-mc Evolutionary Monte Carlo Project grady geophyttertools R package for parsing and plotting geophytter+ output grady kdetrees R package for identifying discordant phylogenetic trees in a sample graemeblair DDestimate graemeblair DDfabricate graemeblair DeclareDesign graemeblair fabricatr graemeleehickey joineR R package for fitting joint models to time-to-event and longitudinal data graemeleehickey joineRCR R package for fitting joint models to competing risks and longitudinal data graemeleehickey joineRML R package for fitting joint models to time-to-event data and multivariate longitudinal data graemetlloyd Claddis R package for cladistic disparity graemetlloyd metatree An R package for compiling meta-analytical trees (phylogenies). grafab brassicaData Example Brassica data from high-density array genotyping data grafab grafab.github.io grafab gsrc grafab pergola graggsd sgcleanup graggsd sgdemtbl graggsd sgfars graggsd sggplot graggsd sgrpipe graggsd tidyhTbl gragusa MARSS Unofficial repository for MARSS package gragusa ase Applied Statistics and Econometrics gragusa csminwel Chris Sims' optimization routine gragusa fanplot2 gragusa grpack Useful R functions and methods for econometricians. gragusa grthemes gragusa lyapunov Solve discrete time sylvester equation in R grahamjwhite IndexNumR An R package for computation of index numbers grahamplace ScrapeAmplitude grahamplace cur-R-encyOld Spending tracking and currency conversion tools grahamplace curRency R Package for spending conversion and tracking grahamplace odds Functions for Gambling grainnemcguire test grake grake Generalized raking as described by Deville et al. (1993) gramener eda Exploratory Data Analysis library for R grantbrown ABSEIR A Flexible and Computationally Efficient SEIRS Modeling Framework grantnikseresht gniklib Personal library of handy R functions. graphdr docxtools Tools for R Markdown to Docx Documents grasshoppermouse hrafsuicidedata Data to test the bargaining model vs. the inclusive fitness model of suicidal behavior against the HRAF Probability Sample grasshoppermouse placekmysore2015publicdata R data package for study of pregnancy diet in Mysore India 2015 graumannlab readat grayclhn dbframe-R-library An R to SQL interface grayclhn oosanalysis-R-library An R library to conduct out-of-sample comparisons grayclhn raincheck super minimal deferred argument testing for R functions grayskripko outStacking grayskripko probGauge grayskripko rattle grayskripko rsmac grayskripko stacking graywh r-gmisc My miscellaneous R functions greatgray scorecard GGCM scorecard package grebbel formr_test greegreg AdvancedR R-package for extracting and manipulating macroeconomic time series data greegreg fars Is github the cause of brain aneurysms green-striped-gecko PopGenReport a simple way to analyse population genetic data using R green-striped-gecko dartR Importing and Analysing DArT type snp and silicodart data greenelab ADAGEpath This repository is the home to ADAGEpath R package greenelab TDM R package for normalizing RNA-seq data to make them comparable to microarray data. greenspb poker Texas Hold 'Em simulator gregce ipify Get your public ip address 📡 w/ Rlang gregmacfarlane censusr Get data through the US Census API gregmacfarlane ctpp_flows CTPP Tract-based work flow data gregmacfarlane forceGraph forceNetwork plots for igraph objects. gregmacfarlane helpers Simple helper functions for R gregmacfarlane my_lectures gregmacfarlane omxr Open Matrix API for R gregmacfarlane sppois Spatial autogressive Poission models in R gregmacfarlane trucksim_report gregorbj Placetypes_USA R project and Shiny app to define place types using EPA's Smart Location Database gregorbj SimHouseholds Household simulation package for VisionEval gregorkschroeder CJReporting CJReporting gregorp gregor Package of useful R utilities and functions. gregorp pk1 gregorp rlandscape R package for simulating random landscapes---forests divided into management units with specific characteristics gregorsc CJReporting CJReporting gregridgeway fastDR R package for fast and easy doubly robust estimation of treatments effects gregridgeway hhsim Hierarchical model simulation functions (R package) gregvonkuster minmjj-mirrored Mirror of bwlambert/minmjj. grepinsight albyaddins Albert's Rstudio Addins greta-dev greta simple and scalable statistical modelling in R greta-dev greta.gp a greta extension for Gaussian process modelling greta-dev gretaDynamics a greta extension for modelling dynamical systems greta-dev gretaGP a greta extension for Gaussian Process modelling gretat sdt.rmcs greymonroe genemodel grfiv sp500SlidingWindow grfiv ustreasuries Real-Time US Treasury Yields and Prices; Bond analyses and options functions including all the 'Greeks' (R Package) gri-is pirMerger Process Getty Provenance Index STAR exports and compute additional derivative data in preparation for lodjob transformation grieman grieman An R package of functions I use griffindoyle baseball.stats Includes the baseball.stats package, includes 8 functions to calculate various offensive and defensive individual statistics griffithdan cooccur Probabilistic Species Co-occurrence Analysis in R griffithdan grassmap C3 and C4 grass distributions derived from the Crossover Temperature Model griffithdan plantspec A tool for spectral analysis of plant stoichiometry griffithdan r3PG An R implementation of the 3PG (Physiological Principles Predicting Growth) model griffithdan thermocamTools Collection of custom functions for FLIR thermocam projects griffithlab GenVisR Genome data visualizations grimbough BiocWorkflowTools grimbough IONiseR Quality Assessment Tools for Oxford Nanopore MinION data grimbough METAcrispR grimbough Rhdf5lib Distribution of the HDF5 library in an R package grimbough arrayQualityMetrics grimbough bioanalyzeR grimbough biomaRt R package providing query functionality to BioMart instances like Ensembl grimbough fitFileR R package intended to read data from FIT files using only native R code, rather than relying on external libraries. grinikova farsdata Coursera Building R packages assignement gritsystems LSPRClient An R client for the LSP REST API griverorz myR griverorz nps-package NPS tools griverorz parmice Parallel MICE grodri nuptfer Nuptiality and Fertility Models gromag nlp Natural Language Processing project gromag wordcloud Project for the course 'Developing Data Products' in the Coursera Data Science specialisation of the John Hopkins Blumberg School of Public Health groovearmada test1 groovetime111 internetworkflow Access Domains and Search Popular Websites Directly from the R Console groupschoof AHRD_on_gene_clusters Automated Assignment of Human Readable Descriptions on Gene Clusters generated by OrthoMCL groupschoof PhyloFun Function prediction of uncharacterized proteins using their evolutionary history. grousell EQAOR grousell MISAR grrmartin-USGS demoPackage grunwaldlab GBS_Data grunwaldlab effectR An R package to call oomycete effectors grunwaldlab ezec Easy Interface to Effective Concentration Calculations grunwaldlab labtools An R package for lab notebook upkeep grunwaldlab metacoder Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data grunwaldlab poppr An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction grunwaldlab quiltr R package for making website representations of directories gsa-oes oesrtoolr The OES R package gsanctuary textexploreapp Text Exploration Shiny App gschofl DR2S Dual Redundant Reference Sequencing gschofl HLAsim Allelic dropout simulation code gschofl IPDdata gschofl biofiles R interface to GenBank/GenPept files gschofl blastr R wrapper for NCBI's blast gschofl coursedata Collection of data sets I use in data analysis courses gschofl genoslideR Handle multiple genomic alignments with annotation in R gschofl gsmisc My miscellaneous R conveniance functions gschofl hlatools A collection of tools to work with IMGT/HLA data gschofl ncbi Search and retrieve data from the NCBI databases. gschofl porequal Quality assessment of SAM/BAM-based multiple alignments gschofl rentrez R interface to NCBI's Entrez Utilities gschofl reutils Talk to the NCBI EUtils gschofl rmisc Miscellaneous R functions gsee FinancialInstrument mirror of FinancialInstrument on R-Forge; an infrastructure for managing metadata of financial instruments gsee TFX mirror of TFX on R-Forge; get real time FX data gsee cryptonatoR R API to cryptonator.com market data gsee qmao mirror of qmao on R-Forge; quantmod add-on: some quantmod-like functions gsee symbology gsee twsInstrument mirror of twsInstrument on R-Forge; integrates IBrokers and FinancialInstrument gshideler mangroveStructure Tools for calculating mangrove forest structure gsimchoni CastleOfR A text-based adventure played in the R console, to test your skills in R gsimchoni ebayr R wrapper to the ebay Finding API gsimchoni ggwithimages Drawing Basic Plots with Images gsimchoni kandinsky Turn any dataset into a Kandinsky painting gsimchoni mocap R interface to parsing and plotting Motion Capture ASF/AMC files gsimchoni songsim Visualize a song's lyrics with a similarity matrix gsimchoni yrbss An easy R interface to the American CDC Youth Risk Behavior Surveillance System (YRBSS) gsk3 bootLR Bootstrapped confidence intervals for (negative) likelihood ratio tests. gsk3 maRketSim maRketSim - Exact-formula bond market simulator for R gsk3 taRifx Development repo for the taRifx package of miscellaneous R functions gsk3 taRifx.geo taRifx.geo package for R, available on CRAN gstricker fastGenoGAM development of a fast version of GenoGAM gtatters Thermimage Package for working with thermal image files gtatters ThermimageCalibrationCheck gthar DASiR R package for programmatic retrieval of information from DAS servers gthar NucleosomeDynamics gthar nucleR2 nucleR is a R/Bioconductor package for working with tiling arrays and next generation sequencing. It uses a novel aproach in this field which comprises a deep profile cleaning using Fourier Transform and peak scoring for a quick and flexible nucleosome calling. gticket buildingRPackages Johns Hopkins Coursera course on building R packages gtimmerhaus aquaR R functions for aquaculture related topics gtlaflair mrkdwnCV gtlaflair rcrtan An R package for criterion-referenced test analysis gtlaflair rrasch gtog dMisc A collection of helper functions for working with financial data. gtonkinhill rhierbaps rhierbaps: R implementation of hierBAPS gtsitsiridis MetaMap gtsitsiridis metatranscriptome gu-mi GOglm Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression gu-mi NBGOF Goodness-of-Fit Tests and Model Diagnostics for Negative Binomial Regression of RNA sequencing Data gu-mi simASD Enhancement of the Adaptive Signature Design for Learning and Confirming in a Single Pivotal Trial guerreror pepo Ratio of expected hemiplasy to homoplasy in a tree gugl58 basicscriptsGG-Package basicscripts - package guiastrennec ggplus A set of additional functions for ggplot2 guiastrennec ggxpose Graphical diagnostics for pharmacometric models guiastrennec modelviz Intuitive visualization of pharmacometric models' structure, parameters and uncertainty guiastrennec xpose Graphical diagnostics for pharmacometric models guido-s diagmeta Official GitHub repository for R package diagmeta guido-s meta Official GitHub repository of R package meta guido-s metasens Official GitHub repository of R package metasens guido-s netmeta Official GitHub repository of R package netmeta guihigashi rdataviva R package to access DataViva's API guihigashi wooldridge6e guilayn lbe3df 3D Fluorescence spectra processing for internal use guilbran dynfactoR guilbran nowcasting GDP forecasting in real time (nowcasting) guillaumechaumet pasta guillaumelf BarchenPackage guillembagaria ggbiome Obtain and Plot Whittaker's Biome Information guillermozbta KNN_KERNEL1 guillermozbta mir guillermozbta portafolio-master guillermozbta precrec guillermozbta s2 guiludwig bsplinedef Spatial deformation using b-splines guiludwig nirSpline nirSpline package for R: fitting and prediction for aggregated spline models for Near-Infrared spectroscopy data. guiludwig stdf stdf package for R: Spatio-Temporal data fusion model gujyjean discretecdAlgorithm Structure Learning Algorithm for Discrete Bayesian Network gumeo accSDA Accelerated Sparse Discriminant Analysis gumeo mnistr Tools for (hopefully) simplifying the task of working with the mnist data set in R gunhanb metastan An R package for performing Bayesian meta-analysis via RStan gunhanb nmaINLA Network meta-analysis using integrated nested Laplace approximations gunhanb nmainla Network meta-analysis using integrated nested Laplace approximations gunpowder78 pathtrackr guokai8 Enrichr simply function for enrichment analysis gusart tuckerR_mmgg the tuckerR_mmgg package gusef Iris An R package to extract spatial features based on multiplex IF images gusef IrisSpatialFeatures An R package to extract spatial features based on multiplex IF images gusef IrisViewer A shiny interface for the IrisSpatialFeatures package gusef MultiplexIFGater Simple tool that reads a segfile, allows gating of tumor cells and outputs the same file without gusef d3Toolbox A shiny widget toolbox to display d3 powered interactive visualizations gusef tSNEfier An interactive tool to explore tSNE plots gustavahlberg Glib gustaveroussy EaCoN Easy Copy Number ! gustavobio RB Search specimens and download images from the JBRJ (RB) herbarium. gustavobio RU Cardápio semanal do RU da Unesp Rio Claro gustavobio brclimate Scrape Brazilian climate data gustavobio flora R package (including shiny web app) for interacting with the Brazilian Flora Checklist. All data included. gustavobio inmet Climate data from 261 INMET (http://inmet.gov.br) stations across Brazil. gustavobio reflora Download specimen images from the Reflora program. gustavobio rnybg Get specimens' descriptions and images from NYBG's virtual herbarium gustavobio semeco Examples of structural equation modelling in ecology gustavobio tpl R package (including shiny app) to query The Plant List v1.1 gustavobio tpldata The Plant List v1.1 data gutorc92 arquivo guytuori simScores simScores guyvani mvhdt MVHDT gvarunkumar ISLR gvarunkumar plotly gvdr whereport Retrieve geographical information for airports using IATA codes gvegayon ABCoptim An implementation of the Artificial Bee Colony (ABC) Algorithm (R-package) gvegayon PDSR An R package for access and analyze NASA's Planetary Data System gvegayon RforceAtlas2 An implementation of Force Atlas 2 in R gvegayon arma64bit Toy package for testing ARMA_64BIT_WORD gvegayon blopmatch blopmatch: Matching Estimator based on a Bilevel Optimization Problem gvegayon googlePublicData An R package to build Google's Public Data Explorer DSPL Metadata files gvegayon numint gvegayon rgexf Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others) in R. gvegayon roxygentest gvegayon sarabc gvegayon sbifapi Herramientas para acceso a la API de la Superindendencia de Bancos gvegayon twitterreport Out-of-the-box analysis and reporting tools for twitter gvelasq2 statascii Create Stata-like tables in the R console gvelasq2 tabr Create tidyverse-friendly tables of frequencies, inspired by Stata gversmee versmee gwcbi MetaOmicSet a package for meta-genomic data analysis gwielinski CarsharingWebData Repo to clean and manage data scrapped from web services of Communauto and Car2Go gwielinski GWmisc repo for R package GWmisc containing varied usefull functions gyang274 gmeta A unified framework for meta-analysis. gyang274 gtsp gtsp: generalized traveling salesman problem - an r-package. gyang274 leafleticon leafleticion: a data package stores leaflet icon data object - an r-package. gyang274 rlt rlt: u.s. top 10 retailer's store location analysis - an r-package. gyang274 route route: calculate shortest route from a start to an end with several stops in between by TSP - an r package. gyang274 scheduler scheduler: create optimal schedule with respect to requirements and constraints - an r-package. gyang274 skm skm: selective k-means algorithm - an r-package. gyang274 uberEx uberEx: a collection of function for uber exercise - an r -package. gyang274 yg yg: an r package on file based database management. gyang274 ygdashboard A modified shinydashboard to incorporate more functionality from adminLTE gyommy15 lab3git gzach93 choppy gziegler ionomicsUtils Set of utility functions for analyzing ionomics data h2oai rsparkling RSparkling: Use H2O Sparkling Water from R (Spark + R + Machine Learning) ha0ye rEDM haakonkavli optionBacktestTools Library of tools for simulating derivative prices and strategies haben-michael rma-exact-pkg hadar2703 ibrokers Automatically exported from code.google.com/p/ibrokers hadawayz1 linmod Linear Regression hadaxu clonevol-mirror haddonm codeutils An R package that contains useful functions for when working in RStudio haddonm simpleSA SImple Stock Assessment hadjipantelis JSM JSM: Semiparametric Joint Modeling of Survival and Longitudinal Data hadjipantelis tPACE Testing version of PACE hadley RcppDateTime hadley S3 Helpers for Programming with the S3 Object System hadley assertthat User friendly assertions for R hadley babynames An R package contain all baby names data from the SSA hadley bench Bechmarking tools for R hadley bigrquery An interface to Google's bigquery from R. hadley bigvis Exploratory data analysis for large datasets (10-100 million observations) hadley bookdown Watch hadley classifly An R package to visualise high-dimensional classification boundaries with GGobi hadley clusterfly An R package for visualising high-dimensional clustering algorithms hadley colformat Format columns with colour hadley dbplyr Database (DBI) backend for dplyr hadley decumar An alternative to sweave hadley densityvis R package for cutting and binning data hadley devtools Tools to make an R developer's life easier hadley dplyr Dplyr: A grammar of data manipulation hadley dtplyr Data table backend for dplyr hadley emo Easily insert emoji into R and RMarkdown hadley evaluate A version of eval for R that returns more information about what happened hadley foobar hadley forcats 🐈🐈🐈🐈: tools for working with categorical variables (factors) hadley fortify Convert any R object to a data frame, suitable for visualisation hadley fueleconomy EPA fuel economy data in an R package hadley gg2v Render ggplot2 graphics using vega hadley ggplot1 Before there was ggplot2 hadley ggplot2 An implementation of the Grammar of Graphics in R hadley ggplot2movies What the package does (one paragraph). hadley ggstat Statistical computations for visualisation hadley gtable The layout packages that powers ggplot2 hadley hadladdin RStudio add-ins by Hadley hadley haven Read SPSS, Stata and SAS files from R hadley hclpicker What the Package Does (one line, title case) hadley helpr An alternative html help system for R hadley hflights An R package containing flights departing Houston in 2011 hadley httr httr: a friendly http package for R hadley imvisoned Constrained visualisation in R hadley l1tf L1 trend filtering hadley layers Layers code extracted out of ggplot2 hadley lazyeval Lazy evaluation: an alternative to non-standard evaluation (NSE) for R hadley lineprof Visualise line profiling results in R hadley linval Tools for exploring linear models hadley lobstr An iterative str() for R hadley localmds Local multidimensional scaling, an R package hadley lubridate Make working with dates in R just that little bit easier hadley lvplot Letter value boxplots for R hadley meifly An R package for exploring ensembles of (generalised) linear models hadley memoise Easy memoisation for R hadley modelr Helper functions for modelling hadley monads Work with Monads in R hadley mturkr Tools to make MTurk tasks easy to run from R hadley multidplyr Partitioned data frames for 'dplyr' hadley mutatr Prototype-based mutable objects for R, based on io and javascript hadley nasaweather Data from the 2006 ASA data expo hadley neiss Data from National Electronic Injury Surveillance System hadley nycflights13 An R data package containing all out-bound flights from NYC in 2013 + useful metdata hadley oldbookdown hadley packman Some ideas for extending package management in R hadley pillar Format columns with colour hadley pkgdown Generate static html documentation for an R package hadley plyr A R package for splitting, applying and combining large problems into simpler problems hadley precis Succintly Summarise Data Frames hadley productplots Product graphics for categorical data hadley profr An alternative profiling package for R hadley pryr Pry open the covers of R hadley purrr Make your pure R function purrr with functional programming hadley r2d3 ggplot2 + d3 = r2d3 hadley r4ds R for data science hadley rappdirs A port of AppDirs for R hadley rastermap Extract raster map data into R hadley readr Read flat files (csv, tsv, fwf) into R hadley readxl Read excel files (.xls and .xlsx) into R hadley recipes Wickham family recipes hadley reshape An R package to flexible rearrange, reshape and aggregate data hadley rifftron Easily diff images from R with difftron hadley rlang hadley roxygen3 hadley rsmith A static site generator for R inspired by metalsmith.io hadley rv2 Simple rv package to practice developing packages with. hadley rvest Simple web scraping for R hadley scagnostics An R package to calculate graph theoretic scagnostics hadley scales Graphical scales hadley secure Secure private R data in public packages hadley shinySignals hadley simpleS4 A simple package that uses S4 hadley sinartra hadley sloop Sail the seas of OOP with ⛵️ hadley spatialVis Spatial components of ggplot2 hadley staticdocs Generate static html documentation for an R package hadley strict Make R a little bit stricter hadley stringr Wrapper for R string functions to make them more consistent, simpler and easier to use hadley strptimer hadley svglite A lightweight svg graphics device for R hadley tanglekit R bindings for Brett Victor's tangle.js hadley testthat An R package to make testing fun hadley tibble Data frames and table sources in "dplyr" style hadley tidyr Easily tidy data with spread and gather functions. hadley tidyverse Easily install and load packages from the tidyverse hadley usdanutrients USDA nutrient database as an R data package hadley vita hadley warncpp What the Package Does (one line, title case) hadley xml2 Bindings to libxml2 hadley yrbss Youth Risk Behaviour Surveillance System Data hadrienj specR Plot spectrum data hafen buildDocs hafen cardoonTools hafen datasummary hafen ed Nonparametric density estimation hafen geofacet R package for geographical faceting with ggplot2 hafen hbgd hbgd hafen housingData hafen iframewidget iframe htmlwidget for R hafen lazyrmd Render R Markdown outputs lazily hafen nxcore hafen operator Loess and STL Operator Matrix Computation for Time Series hafen packagedocs hafen rbokeh-models hafen rmote Utilities for running R on a remote server hafen seriesclust hafen stl2 Seasonal Trend Decomposition using Loess hafen stlplus Seasonal-Trend Decomposition using Loess (STL) in R hafen test9 test hafen trelliscopejs TrelliscopeJS R Package hafen xdata-hackathon-uspto hafenr MACode hafenr SECprofiler hagarciag Proyecto1ST Proyecto 1 de la materia series de tiempo hagenaue BrainInABlender An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA;  2Genet., Univ. of Michigan, Ann Arbor, MI, USA;  3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA  haghish DOT An R Package that Renders and Exports DOT diagrams haghish convertGraph R package for converting graphical files to one another haghish md.log a Markdown log system with function call for R haghish temp a new package hahnlab un-PC A PCA-based method to infer patterns of migration on a landscape using genetic data haijunXue Exercise3 haijunXue mrr haijunXue pssi hairizuanbinnoorazman gamanager Manage Google Analytics Management Settings with R hairizuanbinnoorazman githubR Manage Github repositories with R scripts hairizuanbinnoorazman googledrive R package that wraps the Googledrive API hairizuanbinnoorazman googleslides R wrapper for Google Slides API hairizuanbinnoorazman rgooglepubsub R Wrapper for Google Pubsub hakyimlab OmicKriging Improvements for OmicKriging CRAN release. halasadi plotmaps an R-package for plotting the output from MAPS haleyeidem integRATE integRATE haleyjeppson geom_mosaic haleyjeppson ggmosaic Mosaicplots in the ggplot2 framework hallowkm RenalFunctionModel hallowkm RxODE RxODE is an R package that facilitates easy simulations in R hallucigenia-sparsa seqtime halpo dostats Compute statistics helper functions halpo harvestr A framework for reproducible parallel simulations halpo highlight R highlight package halpo lint Lint R Style Checking halpo obsplines Orthogonal B-Splines halpo parser R parser package halpo pfda halpo wingui R Windows GUI Modifications. hammerlab rinfino R client to run infino (http://github.com/hammerlab/infino) hamun001 STEF hamun001 stFeatures hamzasen artemis API for the French cadastre hamzasen homework Repository for the toolkit hanase BMA BMA R package hanase covRobust covRobust R package hanase dma R package for dynamic model averaging hanase rlecuyer R interface to P. L'Ecuyer's multiple streams RNG hanase snowFT R package for parallel computing hanase vote R package for counting election votes via various methods, including single transferable vote hanasusak cDriver cDriver R package for finding candidate driver genes in cancers hancharik faces R package for displaying multivariate data through a quasi-Chernoff visualization hanel hmkzLAPV Balík pro výuku předmětu Hydrologické dopady klimatické změny (FŽP, ČZU). hanel mlbc hanel muscabicor hanel musica hanel nim An R package for fitting non-stationary index-flood models hanfeisun TIMER No description or website provided. hanfeisun test hanfu-bios varsel R package for generalized knockoffs filter for controlled variable selection hangnoh flybaseR hangost IMAS hangxiong Peer-Effects hangxiong hangxiong.github.io hangxiong wNetwork R package for calculating topological characteristics of weighted networks hank07 Sentiment hankuipeng HKCluster A personal R package with functions of all sorts, but with a special focus on clustering algorithms. (currently under construction) hannahdxz powers hannahlowens BridgeTree For linking and managing occurrence data with phylogenies for niche modeling and ancestral niche reconstructions. hannea monitor R package used to monitor wind turbines. hannesdatta marketingtools R package with methods commonly used in my projects hannesmuehleisen MonetDBLite-R MonetDB reconfigured as an R package - See below for an introduction. Edit hannesmuehleisen clickhouse-r Rstats client for ClickHouse (https://clickhouse.yandex) hansenlab bnbc hansenlab mpra hansenlab yamss hansgundlach IslandPlotMval tools for plotting the Mvalues of CpG islands hansgundlach IslandPlotMval1.1 plot cpg m-values hansgundlach IslandPlot_Mval hansgundlach MvalPlot plot m-val of cpg sites hansoleorka lasR Functions for computing airborne laser scanning metrics hansoleorka myR My R tools hansoleorka skogR Norske skogfunksjoner (Norwegian Forestry Functions) hansterc flaccogui A gui for the R-package flacco using shiny hansthompson Genepop2SPAM An R package for converting Genepop files to SPAM baseline and mixture files hansthompson data_bleaching_tools for cleaning names and numbers quickly hansthompson dlayr Calculate public transit delays based on the General Transit Feed Specification (GTFS) and a real time gps feed. hansthompson gtfsdrilldown a small tool for drilling the gtfs overhead to a single day. hansthompson gtfsnetwork hansthompson pdfHarvester extract tables from scanned pdf files hansthompson rusps R package for using USPS' free address validation api hansthompson special.days An R package for parsing holidays from date-time objects haoeric StackedDensityPlot A flexible and easy-to-use function for building stacked density plot based on ggplot2, which also supports plotting of multiple variables in separate panels. haoeric cytofkit_devel Development version of cytofkit pacakge haowulab DSS haowulab SC2P haozhu233 ezsummary haozhu233 giphyr A R package for giphy API haozhu233 ifaR.handtools haozhu233 kableExtra Construct Complex Table with knitr::kable() + pipe haozhu233 mobilitylabr haozhu233 pkgcopier Get your favorite R packages on another machine in an easier way haozhu233 restorepkg No description or website provided. haphut gtfscream Various Tools for Analyzing GTFS Data happynotes PIHM.AnalysisR PIHM analysis R packages. happyrabbit DataScienceR R package with functions to streamline my data science projects happyshows shinyTableau shinyTableau harader model.plot R package to plot model output haraldwf nordpred Age-Period-Cohort models for prediction of cancer incidence hardmanko CMBBHT Cell Means Based Bayesian Hypothesis Tests hardmanko LineChart-package hardyD Datefun working on different dates function harlanhappydog LLTranktest R package for LLT rank-based non-parameteric testing haroine gaston A package with useful functions for non-response adjustment and calibration in survey sampling haroine icarus A package with useful functions for calibration and reweighting in survey sampling haroldship dkd Double Kernel Density package in R harrelfe Hmisc Harrell Miscellaneous harrelfe greport R greport package: Graphical reporting of clinical trials harrelfe hreport Statistical reports in html with interactive plotly graphics, especially for clinical trials harrelfe rms Regression Modeling Strategies harrelfe rreport R Reporting for Clinical Trials (obsoleted by greport) harryganz rvc Watch harryjerryzhu iheatmap create interactive heatmap and return the consistent data harrysouthworth bcrm harrysouthworth conclus Consensus clustering in R harrysouthworth dmhelp Bits and bobs to aid data mining projects harrysouthworth gbt Gradient Boosted Trees harrysouthworth glmnet harrysouthworth kohonen Self organizing maps harrysouthworth margarita Making texmex more digestible harrysouthworth sbhm Simple Bayesian hierarchical models harrysouthworth sombrero Test suite for texmex harrysouthworth texmex Extreme value modelling with R hartmast concordances hartmast concordances2 harvard-P01 BDLextend Bayesian Distributed Lag Extensions harvard-P01 causalMediation Implementation of Causal Mediation Analysis as published by Valeri and VanderWeele (2013, doi: 10.1037/a0031034) harvard-P01 pkgtemplate R package template harvestchoice hc-api3 Port of HarvestChoice Data Services to OpenCPU (R-based REST framework). harvestchoice techtracker-data harveyl888 barRating R htmlwidget wrapper for jquery bar rating harveyl888 chem harveyl888 fplR Functions to assist grabbing and working with data from Fantasy Premier league Site harveyl888 progressList progressList harveyl888 queryBuilder R htmlwidget for jQuery QueryBuilder filtering of data frames harveyl888 shinyExtra Some additional functions for shiny apps hasbiscoring LimitBoosting Boosts the Limit outcome from regression estimate hase62 Neoantimon An in silico automated pipeline to identify tumor specific neoantigens from whole genome and exome sequencing data hathawayj buildings A case study for character string manipulation in R haven-jeon BOPR Bayesian online learning scheme for probit regression with R haven-jeon Concordance R utilitie functions for language processing haven-jeon KoNLP R package for Korean NLP haven-jeon RscriptUtils RscriptUtils, Tools to make developing Rscript easier haven-jeon Ruchardet R port of 'universalchardet', that is the encoding detector library of Mozilla. haven-jeon Sejong KoNLP static dictionaries and Sejong project resources for corpus linguistics. hawaiiDimensions kokua R package of helpful functions for the Hawaii Dimensions Project hawkdidy hugenedeg An R package for hugeneg 2.0 ST differential expression analysis. hawkdidy prodata An R package for retrieving protien sequence, counting select PTMs, and calculating the molecular weight hawkmoth sablebase hawkrobe mdsdt R Package for General Recognition Theory hazaeljones geozoning a zoning method for spatial data hazelynutt proportion haziqj iprior An R package for I-prior regression haziqj iprior2 Improved estimation methods for I-prior modelling haziqj ipriorBVS Bayesian Variable Selection using I-priors in R haziqj iprobit Binary and multinomial probit regression using I-priors haziqjamil iprior An R package for I-prior regression haziqjamil ipriorBVS Bayesian Variable Selection using I-priors in R haziqjamil iprobit Binary and multinomial probit regression using I-priors hazybluedot enge_survey_stats R package for working with data from the ENGE first-year survey hb-slash bioc-aroma.light hbc CHBUtils Utility functions in R hbc StemCellCommons hbc bcbioBase Base functions and generics for bcbio R packages. hbc bcbioRNASeq Quality control and differential expression for bcbio RNA-seq experiments. hbc bcbioRnaseq Quality control and differential expression for bcbio RNA-seq experiments. hbc bcbioSingleCell Import and analyze bcbio single-cell RNA-seq data. hbc bcbioSinglecell Import and analyze bcbio single-cell RNA-seq data. hbc hbcABC Compilation of rmarkdown templates for bioinformatics analysis hbs-rcs rcs__R_NewPackage Package development example using IQSS SW development best practices hcastel1 IMVA_Package package contents for IMVA shiny app hchauvin fluodilution hcji KPIC hcji KPIC2 KPIC2: An Effective Framework for Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms hcji KPIC2_GUI This is the GUI version of KPIC2. hcji MetPred hcji TarMet An R package and Shiny App for MS-Based Targeted Metabolic Analyses hcji TarSwath hcji VisMS hclimente Rgin hclimente blur 👁️Visualization tools after using martini. hclimente find.me 🔎Explore mutual exclusion patterns in your data. hclimente ggstars Easily add significance marks to your ggplots. hclimente martini 🍸Systems-biology approach to GWAS, now in R! hcrews47 Bayes An R package that performs various functions using Bayes Theorem hd2326 iterClust hdbeukel james-analysis-R R package for visualization and analysis of results from a study performed in JAMES. hdeng88 publishr Medical Publication Package hdng clonevol Inferring and visualizing clonal evolution in multi-sample cancer sequencing hdzierz rkaka R API to the biological database system Kaka hdzierz tt_lfs healyke DEsiR Fractionation estimation in R package healyke FestR Fractionation estimation in R package healyke MCMCglmm-course-Cork healyke SIDER Fractionation estimation in R package healyke TESIR Fractionation estimation in R package heathermkrause ResearchHub heathermkrause Ruby heathermkrause WWC Knight Foundation Weighting Tool - Weighing the Wisdom of Crowds heavywatal cellpoptime 🚧 Analyze and visualize phylogenetic tree of cell population heavywatal namaespace Utility to create dummy R packages for namespace. heavywatal rwtl 📦 wtl: Personal R package heavywatal tumorr 🦀 R interface of tumopp hebrewseniorlife coremisc Reusable code snippets heckendorfc BTDR Access BUPID Top-Down results in R heckendorfc hanku heckendorfc lldbR R interface for the LLDB debugger hectorfr1984 extra hectorfr1984 practicaR hectorpuigdo HRitools hedgehogqa r-hedgehog Hedgehog will eat all your bugs. heibl ips R Interfaces to Phylogenetic Software heibl megaptera R package for the semi-automated construction of DNA sequence alignments from public sequence repositories heibl polenta Multiple sequence alignment with PASTA and GUIDANCE heibl rornitho R package for visualization of bird observations from the citizen-science portal ORNITHO.DE. heibl rpg Multiple sequence alignment with PASTA and GUIDANCE heike cbapi R package to access data through the Census Bureau API heike dbData R package heike ggboxplots heike gglogo R package for creating sequence logo plots heike gglvplot heike ggmapr heike ggparallel R package for creating hammock plots and parallel sets plots using the ggplot2 framework. heike mathGen R package for scraping the Mathematics Genealogy Project heike paper-reginference heike peptider R package for working with peptide libraries heike rotations R package for 3 dimensional rotations heike toolmaRk R package for same-source toolmark matching heike vinference R package for dealing with inference based on the lineup protocol heike x3prplus hejemma labb3 hejemma test11 hejtmy navr R package to handle navigation/positioning data. Includes functions to smooth, compute distances, plot paths and pointings etc. helenecharlotte L1splines L1splines helenecharlotte rSplineTEST rSpline helenecharlotte rSplines rSplines helenristov aCompiler R repository that computes signals and indicators on tick data helgegoessling spheRlab An R package with numerous functions related to spherical geometry. The package is intended in particular for analysis and plotting of geophysical unstructured-grid data. heliosdrm phia Post-hoc Interaction Analysis in R heliosdrm pwr Basic functions for power analysis in R helix123 altOp helixcn HK80 Conversion Tools for HK80 Geographical Coordinate System helixcn TPK R functions for processing TPK 20 ha forest plot in Hong Kong helixcn ephem Figures for astronomical almanac using R helixcn herblabel Create Labels for herbarium specimens based on Darwin Core helixcn phylotools Phylogenetic tools for Eco-phylogenetics helixcn plantlist Checking Status of Plant Names based on The Plantlist and More helixcn seqRFLP Simulation and visualization of restriction enzyme cutting pattern from DNA sequences helixcn skycalc Computational Astronomy in R based on PJ Naughter's AA+ library helixcn spaa Miscellaneous functions for analysis of species association and niche overlap helloicyvodka ggVITA To show the results of dynamic tree blast algorithms. helloicyvodka treeAA To show the results of dynamic tree blast algorithms. hellowangheng QQmining 挖掘你的QQ聊天记录 helmingstay RaggedArray R package. In R, a ragged array is a list of unequally sized vectors. RaggedArray is a package that implements fast modification and replacement of ragged arrays via a pre-allocated matrix and automated tracking of free space. helmingstay SEIR_metapop stochastic MCMC epidemiological compartment model using Guillespie tau leap helmingstay cellauto Cellular Automata Explorer, including Conway's Game of Life. helske GLMMF Generalized Linear Mixed Models with Latent Factors helske KFAS KFAS: R Package for Exponential Family State Space Models helske Rlibeemd Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN) helske StateSpaceGLMM Inference of Generalized Linear Mixed Models Using State Space Representation helske bssm Bayesian Inference of Stochastic Volatility and Exponential Family State Space Models helske debugpkg Package skeleton for debugging C++ code helske diagis Auxiliary functions for importance sampling helske minimal minimal failing example helske ramcmc Building blocks for Robust Adaptive Metropolis algorithm helske seqHMM Multivariate and Multichannel Discrete Hidden Markov Models for Categorical Sequences helske tsPI R package for Bayesian prediction intervals for ARIMA and structural time series models with exogenous variables hemberg-lab FastSC3 A tool for fast unsupervised clustering of very large single cell RNA-Seq data hemberg-lab SC3 A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments hemberg-lab scRNA.seq.course-old Analysis of single cell RNA-seq data course, Cambridge University, UK hemberg-lab scRNA.seq.funcs R package containing our own functions used in the scRNA.seq.course hemberg-lab scfind hemberg-lab scmap A tool for unsupervised projection of single cell RNA-seq data hemstrow snpR hendriau ProxECAT Proxy External Controls Association Test henfiber cronr A cron-like second-precision Scheduler for R henfiber later A Periodic Batch Processing Framework in R henganl2 Yield henkar91 AdvRprogr_lab3 732A94 Advance R programming in cooperation with Milda Poceviciute henkar91 AdvRprogr_lab5 Henrik and Milda lab 5 henkar91 AdvRprogr_lab7 AdvRprogr_lab7 henkelstone NPEL.Classification Analysis package built for the NPEL contribution to the University of Saskatchewan 'Caribou Project' henningsway r2anki Expand Your vocabulary with r2anki and Spaced Repitition henrikmidtiby rawhtmlrwidget henryrscharf IAthresh henryrscharf compressK time series prioritized data compression tool hepplerj arcDiagramR An htmlwidget for arc diagrams. hepplerj hepplerj.github.io hepplerj jahMisc hepplerj superfunds R data package of Superfund sites herbps10 rlme R package for rank-based random effects models hernanmp RRDecon hersonpc RISGMv RISGMv (R Package) - Pacote R para facilitação do acesso ao banco Oracle hertlen BDAepimodelnoerror herulor DFIT herwineric Lab4_Albin_Eric herwineric Lab5_Albin_Eric herwineric Lab6_Albin_Eric hestiri kluster scalable approximation of optimum cluster number. hetong007 SegCN R package for unsupervised Chinese word segmentation hetong007 SwarmSVM The repository is an R package about ensemble learning algorithms based on SVM for my Google Summer of Code 2015 project hetong007 pullword An R package for pullword.com hetong007 rLTP An r package for ltp-cloud service hetong007 rUFLDL An pure R implementation of Ufldl heuselm mocode hexakarthikeyan clarifai_api Tagging of the image using clarifai api hexhead Rinbix R package implementations and interfaces to In silico research group's bioinformatics toolbox inbix hexhead privateEC Privacy preserving Evaporative Cooling feature selection and classification with Relief-F and Random Forests hf2004418 outdepreg What the Package Does (Title Case) hfang-bristol A2 Atlas and Analysis of expert-curated pathways hfang-bristol Pi Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level hfang-bristol XGR An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping) hfang-bristol XOR An R package for deciphering genes and SNPs (eg identified from GWAS and eQTLs) using ontologies hfang-bristol dcGOR An open-source R package for analysing domain-centric ontologies and annotations hfang-bristol dnet An open-source R package for omics data integrative analysis in terms of network, evolution and ontology hfang-bristol supraHex An open-source R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map hferg BTprocessR Post processing tools for BayesTraits hferg EMMLiv2 hferg bayestraitr A set of tools for the analysis of BayesTraits output. hferg beanHeatR hferg btrtools A set of tools for processing and analysing the output of BayesTraits hferg hfgr hferg porkysdad A package where I can dump functions that I have used on various small projects/that I use frequently for daily workflow and analysis. Named after one of Killdozer's greatest hits. hfgolino EGA hfloresr GDPCA hfrick trackeR Infrastructure for Running and Cycling Data from GPS-Enabled Tracking Devices hgf241 SimpleCalculator An example for shiny hgodinez ibrokers Automatically exported from code.google.com/p/ibrokers hhau rjmonopoly hhhh5 ewastools_releases A collection of functions for working with DNA methylation microarrays (data cleaning, normalization, etc.) hhilbig hannostuff2 hhoeflin ConfigParser hhoeflin sanitizr hhsieh biotaxa_Rpackage hidelab diffcoexp Differential coexpression analysis hidelab pathprint Pathway fingerprinting for analysis of gene expression arrays hidelab pathprintGEOData hidelab pcxn hidelab pcxn.db pcxn data package for bioconductor hiendn SSOSVM hilaryparker cats An R package for cat-related functions #rcatladies hilaryparker catsplainr Makes a cat explain R things to you hilaryparker complainr Complains while explaining R hilaryparker explainr hilaryparker hilary Personal R package of Hilary Parker hilaryparker mansplainr Mansplaining R hilaryparker textualize R package for creating summary text for htest objects hild0146 clustAUC initial commit hild0146 fastAUC fast AUC calculation for potentially clustered data hild0146 hildenp hildenp R package hildafab Importer-for-Redmine-0.9.x hildafab MtL hilgerch Linreg hillarykoch powerTCR R package. Main goals are to fit models to the clone size distribution of the TCR repertoire, and to perform model-based comparative analysis of samples. hiltonmbr JScharts Javascript charts libraries in R himanshu-sikaria cleaninghacks Easy and small functions to clean the datasets himanshudhingra textSummary himansu979 Jpackage repository for Jpackage himelmallick Gooogle Group Regularization for Zero-inflated Regression Models with Application to Healthcare in Germany hiraethus Needleman-Wunsch Implementation of the Needleman-Wunsch algorithm hiraethus QuadraticAPI An SDK to interface Dr Paul O'Reilly's QUADRaTiC Connectivity Map software hiraethus QuadraticSDK An SDK to interface Dr Paul O'Reilly's QUADRaTiC Connectivity Map software hiraethus sscmap-in-r sscMap implemented in R programming language hiraethus workout.tracker hiratake55 RForcecom RForcecom provides the connection to Force.com and Salesforce.com from R hirenj Rgator R tools for interacting with the Gator hirenj ggsequence ggplot2 sequence alignments hirenj ggsugar Draw sugars using ggplot2 and grid hirenj glycodomain hirenj glycodomainR hirenj keychain R package for accessing the keychain hirenj knoter Knitr wrapper to produce OneNote API friendly output hirenj reproR Wrap up git operations in R to track projects hischus83 acipackage2 acipackage2 hischus83 aciproduction aciproduction hischus83 utilproxy aciproduction histmr Rekishi A R package for Japanese history hitfuture RTestApp hiweller colordistance Distance metrics for image color similarity. hjfischer BCItools A series of internal scripts for BCI hk1785 OMiAT Optimal Microbiome-based Association Test (OMiAT) hk1785 OMiSA Optimal Microbiome-based Survival Analysis (OMiSA) hkasahar normalregMix normalregMix R-package hkjinlee gaplotr A simple Google Analytics chart generator hkumar6 gene.expression hlauritano newRat hlozza Dasst Tools for reading, processing and writing files hlweeks pkpredict R package hly89 synergyfinder hmalmedal eurovisionsongcontest Scoreboards of the Eurovision Song Contest hmalmedal readfdb Read FDB Files hmalmedal ripplerestr Ripple REST Client for R hmalmedal stringaddins RStudio add-ins for manipulating strings hmalmedal weeknumber A Class for Week Numbers hmenag1 R hmenag1 hmUtils Utilities for R data management and statistical analyses hmenag1 ss4weka Module to prepare KSSP data for Weka analysis hmito hmRLib hmorlon PANDA Phylogenetic ANalyses of DiversificAtion hms-dbmi HMS-DBMI-transmartETL hms-dbmi UpSetR An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al.. hms-dbmi brainmapr R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain Atlas hms-dbmi r_testing Example repo of how to properly test an R package hms-dbmi sandboxR Helps to search, explore, extract and transform phenotypics datasets from dbGap studies hms-dbmi scde R package for analyzing single-cell RNA-seq data hms-dbmi spp SPP - R package for analysis of ChIP-seq and other functional sequencing data hnasif movies hnasif odds- Odds R Package hntek deviation hoangtt1989 NOIS NOIS hoargroup stationsweRegression hochoy foofactors Foofactors Does wonders to factors hochoy r_timekeeper Keeps tracks of dataframe creation times hochoy timekeeper Keeps tracks of dataframe creation times hochwagenlab hwglabr Hochwagen Lab R package hochwagenlab hwglabr2 Collection of R functions used in the Hochwagen Lab hodgeslab hodgeslabR Common code for the Hodges lab hoehleatsu birthdayproblem Functionality for handling the birthday problem with unequal probabilities hoehleatsu quantileCI Compute confidence intervals for quantile hoehna TESS hoesler dbj An R/DBI implementation using Java/JDBC hoesler dbj-h2 R/DBI access to H2 databases hoesler dplyr-src-h2 A dplyr extension to use a H2 database as a data source hoesler rwantshue An "i want hue" color palette generator for R hofnerb gamboostLSS Boosting models for fitting generalized additive models for location, shape and scale (GAMLSS) to potentially high dimensional data. This is a copy of the r-forge repository which is hosted at https://r-forge.r-project.org/projects/gamboostlss. The current relase version can be found on CRAN (http://cran.r-project.org/package=gamboostLSS). hofnerb lethal Compute lethal doses for count data based on generalized additive models (GAMs) together with parametric bootstrap confidence intervals for the lethal dose hofnerb mboost Boosting algorithms for fitting generalized linear, additive and interaction models to potentially high-dimensional data. This is just a copy of the r-forge repository which is hosted at https://r-forge.r-project.org/projects/mboost hofnerb papeR A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models. hofnerb stabs Stability Selection with Error Control hojsgaard doBy hojsgaard gRain R package for gRaphical independence networks (Bayesian networks) hojsgaard gRbase hojsgaard gRim R package for gRaphical independence models hojsgaard pbkrtest Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison holgerbrandl datautils R and shell utilities useful for data-mining holgerman HT12ProcessoR Preprocessing ILLUMINA HT12v4 data intended for project up to thousands of samples holgerman toolboxH Helperfunctions for R making my life easier holgerschw trio R-package for the analysis of trio data hollycorbett HavenOnDemandR An R wrapper for the excellent HPE Haven OnDemand machine learning and high-performance computing API service holstius CALINE R interfaces to the CALINE family of models holstius CALINE3 holstius CALINE4 R interface to CALINE4 dispersion model holstius Rcaline R interface to CALINE3 steady-state Gaussian plume model holstius aermod R package for interfacing with AERMOD holstius airdata holstius cosm R package to pull data from Cosm holstius fmatch Fast string matching with limited wildcard support, using Rcpp holstius holstius R package with helper functions holstius httpget R package to make HTTP requests and locally cache the results holstius metfiles R package for working with meteorological data holstius nfcwater holstius nmea R package for parsing NMEA sentences holstius opentsdbr Pull data from OpenTSDB into R holstius panda R package to support PANDA data analysis holstius plume R package for working with steady-state Gaussian plume models holstius wunderground R package for Weather Underground holub008 gdlm Gradient Descent for Linear Models in R homerhanumat Rdym2 Fork of wratematics/Rdym homerhanumat ShinyLocalEdu Shiny apps wrapped in R functions, for classroom use. homerhanumat addinggplot2 RStudio Addin for interactive construction of plots with ggplot2 homerhanumat bcscr Accompanies text Beginning Computer Science with R homerhanumat classr Functions for course management homerhanumat drat homerhanumat learning_bootstrap homerhanumat octoPlay homerhanumat shinyCustom Customized versions of Shiny widgets homerhanumat tigerData A few datasets for statistics instruction homerhanumat tigerTree R functions for working with trees in elementary statistics. homerhanumat tigerstats An R package for the teaching of statistics homonecloco bio.tilling R scripts to plot/analyse coverage from BED files homonecloco expvip-analysis R scripts to analyse expression data. honggao110 TrackCompliance R package for calculating tracking compliance honglioslo rNVE Hong's often used functions hongyuanjia eplusr A Toolkit for Using EnergyPlus in R. horver InstallR Installs libraries for an R script hot-stepper herecomes here comes the hot stepper hotneim lg Local Gaussian dsitributions: An R package hotneim lgde R-packgage containing the code for multivariate and conditional density estimation using the LGDE hovisa annar Chooses random card from a standard deck of cards. Can either show suit, face, value, or all three. howardjp cmna Computational Methods for Numerical Analysis howardjp phonics Phonetic Spelling Algorithms in R howardjp waterfall Waterfall Charts in R howardycfer cferdist howardycfer cferutil hoxo-m CSAD CSAD: Contrastive Structured Anomaly Detection for Gaussian Graphical Models hoxo-m KLIEP Kullback-Leiblar Importance Estimation Procedure (with Cross Validation) hoxo-m SparkRDD SparkRDD - SparkR extension for using Spark RDD hoxo-m SparkRext SparkR extension for closer to dplyr hoxo-m analog Analyzing Access Log Data with R hoxo-m bayesopt An R Implementation of Bayesian Optimization hoxo-m cpls cPLS: High Interpretable Machine Learning for High Dimensional Big Data hoxo-m densratio An R Package for Density Ratio Estimation hoxo-m dplyr.teradata A Teradata Backend for dplyr hoxo-m dplyrr Utilities for comfortable use of dplyr with databases hoxo-m easyRFM An easy way to RFM analysis by R hoxo-m fixer Tools for Fix Functions in R Packages hoxo-m githubinst Easy to Install R Packages on GitHub hoxo-m githubinstall A Helpful Way to Install R Packages Hosted on GitHub hoxo-m hoxomodeling hoxo-m lambdaR Novel lambda expressions in R hoxo-m luxautil R Utilities in Luxa hoxo-m magicfor Magic Functions to Obtain Results from for Loops in R hoxo-m mergetree hoxo-m pforeach Easy to parallel processing in R hoxo-m prophetExt Extension for Facebook Prophet hoxo-m toybayesopt Crude R Implementation of Bayesian Optimization hpcc-systems r2hpcc hpchoi fregion hpchoi hpchoi.github.io hplieninger instevalR Combine the results of several "InstEvaL" course evaluations and plot them hplieninger mpt2irt Bringing Multinomial Processing Tree Models To Item Response Theory To Investigate Response Styles hplieninger stylesim Simulate (and Analyse) Data Distorted by Response Styles hr1912 TreeExp TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data hr1912 phyExp phyExp: R package for expression phylogeny analysis hrabel rlearn Machine and Deep Learning in R hragbalian lrwmrkscip2p hragbalian lrwmrksciqccheck hrbrmstr RBerkeley 🐱 Oracle 'Berkeley DB' Interface for R hrbrmstr Rforecastio ☁️ Simple R interface to forecast.io weather data hrbrmstr adobecolor Use Adobe swatch files as R color palettes hrbrmstr albersusa Tools, shapefiles & data to work with an "AlbersUSA" composite projection in R hrbrmstr algorithmia R interface to the Algorithmia API hrbrmstr asam :anchor: R package providing tools to access, download, update, process and visualize Anti-shipping Activity Messages (ASAM) Database Files hrbrmstr berate Provide Insightful Motivation During Interactive R Sessions hrbrmstr bismer Generate Shakespearean Insults with R hrbrmstr blocklist 💂 Tools to Work with the 'API' in R hrbrmstr bom Tools to Identify and Work with Byte Order Marks in R hrbrmstr burrp :bookmark: Tools to Import and Process 'PortSwigger' 'Burp' Proxy Data hrbrmstr cdcfluview :mask: R package to Retrieve U.S. Flu Season Data from the CDC FluView Portal (WHO & ILINet) hrbrmstr censys R interface to the Censys "cyber"/scans search engine • https://www.censys.io/tutorial hrbrmstr cfhttr :construction_worker: Workaround Cloudflare Anti-DDoS Protection hrbrmstr cloc R package to the perl cloc script (count lines of code) hrbrmstr crafter 🔬 An R package to work with PCAPs hrbrmstr curlconverter :curly_loop: :arrow_right: :heavy_minus_sign: Translate cURL command lines into parameters for use with httr or actual httr calls (R) hrbrmstr cymruservices :dragon: package that provides interfaces to various Team Cymru Services hrbrmstr czdaptools R tools for downloading zone data from ICANN's CZDS application hrbrmstr darksky :cloud: R interface to the Dark Sky API hrbrmstr databox Tools to Work with the databox API in R hrbrmstr ddsecblog knitr format for ddsec blog posts hrbrmstr decapitated Headless 'Chrome' Orchestration in R hrbrmstr devd Install, Start and Stop 'devd' Instances from R hrbrmstr docxtractr :scissors: Extract Tables from Microsoft Word Documents with R hrbrmstr domaintools R API interface to the DomainTools API hrbrmstr dtupdate The dtupdate package has functions that try to make it easier to keep up with the non-CRAN universe hrbrmstr epidata :chart_with_downwards_trend: Tools to Retrieve Economic Policy Institute Data Library Extracts in R hrbrmstr exiv :camera: Read and Write 'Exif' Image/Media Tags with R hrbrmstr flowdockr R package to work with the Flowdock API hrbrmstr forceaccounted The Force, Accounted (in R) hrbrmstr freepst An 'rJava' wrapper around 'java-libpst' to read PST/OST files hrbrmstr gdns Tools to work with the Google DNS over HTTPS API in R hrbrmstr ggalt :earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2' hrbrmstr ggcounty 🌐 Generate ggplot2 geom_map county maps hrbrmstr gghazard Improved Base and Grid Plots for Survival Hazard Cox Regression hrbrmstr greynoise Query 'GreyNoise Intelligence 'API' in R hrbrmstr gzmem ⏫⏬ Partial resurrection of the Rcompression package since memCompress/memDecompress are brain dead hrbrmstr hrbraddins Additional Addins for RStudio hrbrmstr hrbrmisc personal R pkg hrbrmstr hrbrmiscpp hrbrmstr hrbrmrkdn Personal R Markdown templates hrbrmstr hrbrthemes :lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components hrbrmstr hrbrthemeslite hrbrthemes w/o spell check hrbrmstr htmltidy 🚯 Tidy Up and Test XPath Queries on HTML and XML Content in R hrbrmstr hubway R interface to the Hubway "API" hrbrmstr humanparser 👱 R package to decompose full (human) names into component parts hrbrmstr hyphenatr R interface to Hunspell hyphenation hrbrmstr infermedica (migrated from gitlab to keep a copy in the event intermedica decides to be stupid and violate AGPL) hrbrmstr ipapi An R package to geolocate IPv4/6 addresses and/or domain names using ip-api.com's API hrbrmstr iptools 🍴 A toolkit for manipulating, validating and testing IP addresses and ranges, along with datasets relating to IP addresses. While it primarily has support for the IPv4 address space, more extensive IPv6 support is intended. hrbrmstr irced ☎️ Putting the "R" into IRC hrbrmstr jasmine simple json parser (just a parser) hrbrmstr jericho :notebook_with_decorative_cover: Extract plain or structured text from HTML content in R hrbrmstr jsonview JSON pretty printer & viewer in R hrbrmstr jwatr :card_index: Tools to Query and Create Web Archive Files Using the Java Web Archive Toolkit in R hrbrmstr keybase :japanese_castle: Tools to Work with the 'Keybase' 'API' hrbrmstr knitrengines An R package to collect and seamlessly add new language engines to knitr hrbrmstr lineworkmaps Use Project Linework maps easily in R hrbrmstr localgeo small R page for geocoding of US city/state to lon/lat hrbrmstr lodes Retrieve Data from LEHD Origin-Destination Employment Statistics Server in R hrbrmstr longurl ℹ️ Small R package for the URL Expander API hrbrmstr maRalago Is 🍊 at Mar-a-Lago hrbrmstr markdowntemplates ✅🔻 A collection of alternate R markdown templates hrbrmstr melting5jars MELTING 5 jars hrbrmstr metis Helpers for Accessing and Querying Amazon Athena using R, Including a lightweight RJDBC shim hrbrmstr metricsgraphics 📈 htmlwidget interface to the MetricsGraphics.js D3 chart library hrbrmstr mhn 🍯 Analyze and Visualize Data from Modern Honey Network Servers with R hrbrmstr moviemeter Tools to work with the MovieMeter API in R hrbrmstr mrt Tools to Retrieve and Process 'BGP' Files in R hrbrmstr msgxtractr A 'reticulate' wrapper to the Python 'ExtractMessage' module. hrbrmstr myip Tools to Determine Your Public 'IP' Address in R hrbrmstr mywx Tools to Query the 'MetMalaysia' Web Service 'API' hrbrmstr ndjson ♨️ Wicked-Fast Streaming 'JSON' ('ndjson') Reader in R hrbrmstr netintel A collection of "network intelligence" utilities for R. ASN info, IP reputation, etc. hrbrmstr newsflash Tools to Work with the Internet Archive and GDELT Television Explorer in R hrbrmstr newsfreq R package to search for keyword frequencies in news articles via newsfreq.com hrbrmstr nifffty Small R package to post events to IFTTT Maker channel/recipes hrbrmstr nominatim 🌏 Tools for Working with the 'Nominatim' API in R hrbrmstr ohby R interface to the 'ohby' URL & content shortener hrbrmstr omdbapi R package to access the OMDB API (http://www.omdbapi.com/) hrbrmstr opengraph Tools to Mine 'Open Graph'-like Tags From 'HTML' Content hrbrmstr overpass ℹ️ Tools to Work With the OpenStreetMap (OSM) Overpass API in R hrbrmstr pantone R package for Pantone colors of the year hrbrmstr passivetotal Useful tools for working with the PassiveTotal API in R hrbrmstr passwordrandom 🔒 Access the PasswordRandom.com API in R hrbrmstr pastebin :clipboard: Tools to work with the pastebin API in R hrbrmstr pluralize An R package to "Pluralize and Singularize Any Word" hrbrmstr porc :boar: Tools to Work with 'Snort' Rules, Logs and Data hrbrmstr pressur ䷮ Query and Orchestrate the 'WordPress' 'API' with R hrbrmstr punycode R code to work with punycode domains hrbrmstr qrencoder 🔳 Make QR codes in R via libqrencode hrbrmstr r7snr R tools to work with Rapid7 Sonar scans hrbrmstr radb :microscope: Tools to Query the 'Merit' 'RADb' Network Route Server hrbrmstr radviz R htmlwidget for radviz! hrbrmstr rappalyzer R port of Wappalyzer hrbrmstr rdatainfo helper pkg for the macOS QuickLook plugin hrbrmstr resolv ldns DNS resolver wrapper libary for R hrbrmstr rgeocodio Tools to Work with the https://geocod.io/ API hrbrmstr rosette Tools to Work with the Rosette API in R hrbrmstr rpwnd :no_good: The Most Benignly Malicious R Package on the Internet hrbrmstr safebrowsing R interface to the XHR Google Safe Browsing "API" hrbrmstr sanders WIP!!! — Web-scraping and Web-crawling Content Parsing, Validation and Sanitization Helpers hrbrmstr satcat :satellite: Tools to Work with the 'CelesTrak' Satellite Catalog API in R hrbrmstr scamtracker R pacakge interface to the BBB ScamTracker : https://www.bbb.org/scamtracker/us hrbrmstr scimple :heavy_minus_sign::heavy_minus_sign::heavy_minus_sign::large_orange_diamond::heavy_minus_sign::heavy_minus_sign: Tidy Simultaneous Confidence Intervals for Multinomial Proportions hrbrmstr sentimental Tools to Work with the 'text-processing.com' API in R hrbrmstr sergeant :guardsman: Tools to Transform and Query Data with 'Apache' 'Drill' hrbrmstr shodan 🌑 R package to work with the Shodan API hrbrmstr slackr :hash: A package to send webhook API messages to Slack.com channels/users from R hrbrmstr speedtest :triangular_ruler: Measure upload/download speed/bandwidth for your network with R hrbrmstr splashr :sweat_drops: Tools to Work with the 'Splash' JavaScript Rendering Service in R hrbrmstr ssllabs Tools to Work with the SSL Labs API in R hrbrmstr statebins Alternative to choropleths of US States ala http://bit.ly/statebins hrbrmstr streamgraph 〰️ htmlwidget for creating streamgraph visualizations in R hrbrmstr swagger 👷 Build R API Packages Automatically from Swagger JSON Specifications hrbrmstr swatches 🎨 Read, Inspect, and Manipulate Color Swatch Files hrbrmstr taucharts 📊 An R htmlwidget interface to the TauCharts javascript library hrbrmstr test hrbrmstr threatcrowd R tools to work with the ThreatCrowd API hrbrmstr tidyweb Easily Install and Load Modern Web-Scraping Packages hrbrmstr tinyjs tinyjs R wrapper pkg hrbrmstr tlsobs :telescope: Tools to Work with the 'Mozilla' 'TLS' Observatory 'API' in R hrbrmstr triage Tools to Aid in Debugging Issues Across R Sessions hrbrmstr uaparserjs Parse Browser 'User-Agent' Strings into R Data Frames hrbrmstr vegalite R ggplot2 "bindings" for Vega-Lite hrbrmstr voteogram U.S. House and Senate Voting Cartogram Generators in R hrbrmstr waffle :maple_leaf: Make waffle (square pie) charts in R hrbrmstr wand :tophat: R interface to libmagic - returns file mime type hrbrmstr warc :card_index: Tools to Work with the Web Archive Ecosystem in R hrbrmstr wayback :rewind: Tools to Work with the Various Internet Archive Wayback Machine APIs hrbrmstr webhose :hammer: Tools to Work with the 'webhose.io' 'API' in R hrbrmstr whoisxmlapi ❔ R package to interface with the WhoisXMLAPI.com service hrbrmstr wondr Tools to Work with there CDC WONDER API in R hrbrmstr writhings R pacakge to work with the Withings API hrbrmstr xlsxtractr Extract Things From Excel (xlsx) Files in R hrbrmstr xmlview Format and Pretty Print 'HTML'/'XML' Content in R (RStudio viewer or browser) hrbrmstr xslt lightweight XSLT processing package for R based on xmlwrapp hrbrmstr zellingenach A visual exploration of the spatial patterns in the endings of German town and village names in R hrbrmstr zkcmd Tools to Administer 'Zookeeper' Instances with Four-letter Commands in R hrbrmstr zoneparser A V8-powered R package to parse Domain Name System (DNS) zone files hrecht censusapi R package to retrieve Census data and metadata via API hrmJ phdR hrmJ stockholm r scripts and functions for a dissertation project in stockholm hrmerrill hunterr R functions useful to me. hrpcisd distcomp Distributed Computations hruffieux echoseq echoseq R package - Faithful replication and simulation of molecular and clinical data hruffieux locus locus R package - Large-scale variational inference for combined covariate and response selection in sparse regression models hs3180 awesome-cep hs3180 dplyr.sqlserver SQL Server source driver for dplyr hs97 WilliamsGrad hs97 kane2017 hsamuelson CiphR A R Library for Ciphers hsamuelson rnetf rnetFramework is a modular ml framework for sub-classification hsamuelson testpackrr hsavoy anchoredDistr The anchoredDistr R package for Bayesian post-processing hsavoy madr Switched to hsavoy/anchoredDistr hshdndx new-to-CNV hsiujho BacteriaIden hskksk rstore hskksk setup.R hskksk write.libsvm hsm blm Bayesian linear regression hsong1 PUlearning hsonne blockrand2 R package for block randomisation, inspired by R package blockrand hstojic cogmod R package for cognitive modeling. hstojic hclass hstojic hfunk Collection of useful R functions for everyday data analysis and modeling htc502 ewrefxn useful R auxillaries htmlwidgets datamaps Datamaps Test htmlwidgets iquiz Interactive Quizzes for R Markdown htmlwidgets knob jquery Knob HTML Widget. htmlwidgets morris Morris JS HTML Widget for R htmlwidgets sparkline jQuery Sparkline HTML Widget for R htso AHA htssouza predictoR Generic predictor for R hturner BradleyTerry2 BradleyTerry2 package for Bradley-Terry models in R hturner PlackettLuce Plackett-Luce models hturner gnm gnm package for generalized nonlinear models in R huangmatthieu MyRCalmar huangrenhuai pldfit Protein-ligand biosensor data fitting huangrenhuai sgfit protein-protein kinetics data fitting by biosensor huangrenhuai xyFit protein-protein kinetics data fitting by biosensor huangrh blidata BLI Experiment Data huangrh phpTutorial huangrh pldfit Protein-ligand biosensor data fitting huangrh radii Determine Stokes Radius By Gel Filtration huangrh rclus huangrh relvm huangrh rstarating huashan RSExpert RStudio Experts huashan ezdf Easy data.frame with support for SPSS like labels huashan logr R logging package for parallel computing huashan pander Clone of R package pander, with better support for CJK huashan pkgutils Utility functions for building R packages huatengh Classiphy Classify gene trees basing on the processes generating species-tree gene-tree discordance huayingfang CCLasso CCLasso: Correlation Inference for Compositional Data through Lasso huayingfang gCoda gCoda: conditional dependence network inference for compositional data huebschm YAPSA Yet Another Package for Signature Analysis hugheylab deltaccd hughjonesd anim.plots Simple animated plots for R hughjonesd betr Behavioral Experiments Toolkit in R hughjonesd ffplot The fast, friendly plotting function for R hughjonesd hoffr Higher order functions for R hughjonesd htmlforms HTML forms for R, with checking and autofill hughjonesd huxtable An R package to create LaTeX and HTML tables, with a friendly, modern interface. hughjonesd refset Subsets with reference semantics hugoallan9 ASIES hugoallan9 Recetas hugoallan9 funcionesINE Implementacion como paquete del codigo para hacer graficas hugogogo varband R package for learning local dependence in ordered data hui-tony-zk PDclust hui-tony-zk distanceParallel Parallelize Distance Matrix Calculations hui-tony-zk pairwiseMethyl hujianxin rpe A R package example project. humb1rd Example repository for first project humbertcostas LaSecre La Secretaria humbertcostas secretary La Secretaria humbertcostas worldbank Parsing wdi.worldbank.org data to R data frames humburg reportmd Create multi-page HTML reports in R humburg tileHMM Methods and classes to build HMMs that are suitable for the analysis of ChIP-chip data. The provided parameter estimation methods include the Baum-Welch algorithm and Viterbi training as well as a combination of both. hummelma TEQC Quality control for target capture experiments hunzikp bernina Deep learning in R hunzikp chmm Conditional Hidden Markov Models hunzikp computegraph Deep learning in R hunzikp pgrid Convenient access to PRIO GRID raster data hunzikp spmle pseudo maximum likelihood methods for interdependent binary data hunzikp teflar hunzikp vectorizer hunzikp velox huonw roborust huonw sisfft hutaobo AluScanCNV hutchisonjtw JNCCTools The JNCCTools R package hutchr LLSR Data Analysis of Liquid-Liquid Systems hute37 emacs-dots hute37 moob R scratchpad hute37 urlr R: custom URL handlers hvillalo echogram Echogram Visualisation and Analysis hwborchers dfoptim hxchengtj Package1 hxchengtj ensembleCNV hxia Achilles4Impala Port Achilles to Impala hxia DatabaseConnector4Impala Port OHDSI/DatabaseConnector to support Impala hxia SqlRender4Impala Port OHDSI/SqlRender to support Impala hxia i2b2_1.6.09_PostgreSQL_9.3 hxin gsea R package for gene set enrichment analysis hxin idbox a helper package with mapping data between ids hxin ograph R package for ontology graph analysis hxin topOnto R package for ontology enrichment analysis hxin topOnto.HDO.db hxrts pascal Genomics / bioinformatics analysis & visualization R package. hy473000 ram hycheon123 proteomics hydro-giub hydroBE Read, plot, and analyse hydrological data. hydrosolutions ftimeseries R-package for statistical runoff prediction. hyginn MSAtools hyginn ekplektoR Network Analysis for Cell- and Systems Biology hyginn rete Network Analysis for Cell- and Systems Biology hyginn shi Multiple Sequence Alignment Handling and Inspection hyginn zu BCB420/JTB2020 2018 Repository hyounesy bioc2016.visrseq Workshop materials for BioC2016 hypercompetent gray hypertidy discrete Discrete axes abstraction hypertidy ffraster treat ff arrays as raster objects, and vice versa hypertidy gridcol Column vectors belong raster hypertidy ncmeta hypertidy obj read blender obj (WIP) hypertidy quadmesh raster grid as indexed quad mesh hypertidy rancid R And NetCDF Interface Development hypertidy rangl plot facilities for spatial data in OpenGL or WebGL hypertidy scdb back-end for silicate hypertidy scgraph A silicate common form for igraph in R hypertidy scspatstat A silicate common form for spatstat in R hypertidy tabularaster Tidy approaches with raster. hypertidy tidync systematic approaches to NetCDF data extraction, manipulation and visualization hyphon81 modifiedITKR Modified ITKR package. hyu-ub BayesNetBP R package for inference in Bayesian networks. hyu-ub bootcluster hyunhonoh splunkconnector hyunseungkang ivmodel hyunyulhenry HenryQuant hzambran SWAT2R Input/Output functions for pre- and post-processing SWAT (hydrological model) files in R hzambran cec2013 Benchmark Functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 hzambran hydroGOF Goodness-of-fit functions for comparison of simulated and observed hydrological time series hzambran hydroPSO Model-Independent Particle Swarm Optimisation for Environmental Models hzambran hydroTSM Time Series Management, Analysis and Interpolation for Hydrological Modelling hzc363 MetaCyto An R package for Meta-analysis of Cytometry Data hzc363 tssm hzders Final-project hzhanghenry caOmicsV i-akiya R4CDISC R package for import CDISC Dataset-XML i-kiwamu Rjpstatdb R interface to statistical database organized by Japanese government (http://statdb.nstac.go.jp/) i02momuj RKEEL RKEEL: Using Keel in R code i2b2-opencpu-plugin i2b2rplugin This package manages the i2b2 database ( connecting, security, extracting, vizualisation ) i40poster geoSampaRHelper The goal of this project is to provide a helper lib to handle Sao Paulo/SP/Brazil Geo Data iDigBio idb-us-collections iDigBio ridigbio ridigbio -- an R interface to iDigBio's API (see http://www.idigbio.org/) iMissile dvtdspack Пакет с функциями общего пользования для Shiny App iMissile dvtiot iNZightVIT FutureLearnData An R package containing the "Future Learn" data sets used for the Data to Insight MOOC. iNZightVIT Lite Shiny Application for iNZight. iNZightVIT RgoogleMaps A clone of an older version of RgoogleMaps (1.2.0.7) that iNZight works with. iNZightVIT iNZight iNZight GUI package using reference classes iNZightVIT iNZightMR A package for interacting with and analysing multiple response data. iNZightVIT iNZightMaps A package for interacting with and visualising geographic data. iNZightVIT iNZightModules Each sub module is now placed here... they are just GUI interfaces. iNZightVIT iNZightPlots Plot functions for use by iNZight. iNZightVIT iNZightRegression The core functions used to perform statistical inference for iNZight. For more info see: http://www.stat.auckland.ac.nz/~wild/iNZight/ iNZightVIT iNZightTS The time series functionality designed for use within iNZight. For more info see: http://www.stat.auckland.ac.nz/~wild/iNZight/ iNZightVIT iNZightTools Functions for intergration of iNZight GUI to iNZight packages. iNZightVIT vit A suite of visualization tools that demonstrate the intuition behind statistical inference. iago-lito bimark Analyse and simulate bilateral mark-recapture data with R iagomosqueira FLFishery Draft of classes and methods for simpler fleet/fishery modelling iagomosqueira FLasher New version of Flash iagomosqueira mse Tools for running Management Strategy Evaluations using FLR iagomosqueira mseviz Plots and tools for visualizing MSE outputs iagomosqueira myPKG A test package for some trouble we are having with roxygen, probably our fault iagomosqueira om4FLR Use of integrated SA models to construct Operating Models iagomosqueira ss3om iagomosqueira tunadata Aggregated Public Datasets from the Tuna RFMOs iaingallagher normplots jamovi module to provide plots for assessing data normality iaingallagher qqplots iainmwallace DataDepository An R package to upload datasets to BigQuery for public sharing iainmwallace testing What the Package Does (one line, title case) iainxingham clinics iamamagicalunicorn fs.data.support Package for manipulating data from FAOSTAT iamamutt mejr An R package for importing a set of commonly used, custom functions iamamutt rbaes R Bayesian Analysis and Estimation Stuff iambaim git-sandbox For hands-on in the GIT tutorial iamsulthan IndianTaxCalc Calculate Taxable Income and Income Tax liability for Assessment Year 2017-18 and 2018-19 for Individual resident aged below 60 years,Senior Citizen,Super Senior Citizen, Firm, Local Authority, Any NRI / HUF / AOP / BOI / AJP, Co-operative Society. iamtrask R-Homomorphic-Encryption-Package This is a fork of the R HomomorphicEncryption package originally from http://www.louisaslett.com/HomomorphicEncryption/ ian-hastings rotations insecticide rotation strategies ian1roberts GEOquery Hacked version of https://github.com/seandavi/GEOquery to use HTTP requests iancj88 hrutilmsu general r function for hr ianfiske commonutils A place to keep my common R functions that don't live elsewhere. ianfiske unmarked R package for hierarchical models in ecological research ianhandel epidemr A simple, tidy epidemiology package for R ianhussey SCED ianhussey ethicalpeeking Library of Sagarin, Ambler, and Lee's (2014) functions to calculate paugmented ianhussey timesavers package of functions to save time ianjjohnson arulesRegression Regression package for R based on arulesCBA's transaction-boosted associative classification algorithm ianjonsen bsam Bayesian State-space models for Animal Movement ianjonsen bssm ianjonsen duckConfit State-space filtering code for RAATD data paper ianjonsen rwamr ianjonsen slootr R tools for manipulating Argos tracking data ianjonsen ssmTMB A fast state-space model for filtering Argos satellite tracking data iankloo s3.packages iankloo sigmaNet Render igraphs from R using Sigma.js ianmcook implyr SQL backend to dplyr for Impala ianmcook weatherAlertAreas R package containing alert areas used by the United States National Weather Service ianmcook weatherAlerts R package to get active weather alerts from the United States National Weather Service ianmcook wkb R package for conversion between Spatial objects and well-known binary (WKB) geometry ianmoran11 ttsready iant04128591 quaker iaolier rQSAR iatgen iatgen Builds and Analyzes IATs for Qualtrics iawindham snakesandladders Final Project for GEOL_590 ibarraespinosa eixport R package to export VEIN and other emissions to other models ibarraespinosa vein R package to estimate bottom-up Vehicular Emissions INventories VEIN. ibartomeus BeeFunData Package to serve data collected under the BeeFun project. ibartomeus BeeIT Tools to estimate tongue length, foraging distance and body weight form bees intertegular distance (IT) ibartomeus citesr An r package to access CITES (https://speciesplus.net/) ibartomeus fundiv Functional diversity and Eveness indexes calculation ibartomeus smalldata Package documenting the creation of a small data package on bee traits ibartomeus traitbase Package documenting the creation of a small data package on bee traits ibartomeus traitmatch Package to predict trait matching from species interactions. ibludau SECaddons ibludau clusterMapper ibn-salem chromint ibn-salem chromloop Prediction of chromatin looping interactions from ChIP-seq and sequence motifs ibn-salem genepair Functions to Analyse Pairs of Genomic Elements like Genes. ibn-salem sevenC 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs iboland testr test repository for git use with R ibsquare MoonlightR ices-tools-dev oxydebt functions to calculate oxygen debt from CTD and water bottle data ices-tools-dev rICES R for ICES: Linking ICES data, science, and advice with R ices-tools-prod fisheryO Fisheries Overviews ices-tools-prod icesAdvice Functions related to ICES advice ices-tools-prod icesDatras R interface to DATRAS trawl database web services ices-tools-prod icesSAG R interface to Stock Assessment Graphs database web services ices-tools-prod icesSD R interface to Stock Database web services ices-tools-prod icesSLD R interface to Stock List Database web services ices-tools-prod icesSharePoint R interface to the ICES community sharepoint site ices-tools-prod icesTAF Functions to support the ICES Transparent Assessment Framework ices-tools-prod icesVocab R interface to Vocabulary database web services ices-tools-prod msy A collection of methods to estimate equilibrium reference points for fish stocks ick003 GPspt GPspt ick003 RecurPart A set of r function to perform ND partitionning ick003 SpTMixture SpTMixture icourts icj A package to scrape judgments of the International Court of Justice (http://www.icj-cij.org) id-bioinfo TIPars-benchmark id-bioinfo titest Taxa Insertion program testing idaejin HRQoL HRQoL R package idc9 r_jive Implementation of AJIVE in R idekerlab r2cytoscape Data conversion utilities for R/Cytoscape idiazst causal-quantile R package for estimating quantile treatment effects idiazst causalquantile R package for estimating quantile treatment effects idiazst continuoustreat Estimators for the causal effect of a continuous treatment idiazst ordinaltmle TMLE with efficiency guarantees for randomized trials with ordinal outcomes idiazst survipw Targeted IPW with known asymptotic distribution for estimation of RMST from right censored data idiazst survtmlerct TMLE for survival outcomes with efficiency guarantees idmn compr idmn dval Data Validation idmn fbdata Facebook data archieve parser idmn genius An interface to genius.com API idmn guessword idmn wfindr Crossword, scrabble and anagram solver idot idoplots R utility functions for plotting idroz abc Helper functions for the Athero-B-Cell consortium idroz bering.d3 Plot ggplot objects as D3 idroz bering.dr Divide and Recombine framework for parallel data processing idroz bering.ml Bering AI environment idroz bering.rna idroz beringml R package for machine learning across distributed data.frames idroz dml Distributed machine learning in R idroz gasub R package for extraction of active subnetworks using a global search algorithm idroz ggbullet Bullet chart with ggplot idroz maworkflow R workflows for gene expression analysis iedenkim LPEseq Supplementary files including R source code and datasets iedenkim PSARseq Population stratification adjustment for RNA-seq data iembry-USGS FEWSR FEWS river, lake, and pond models used to obtain the evapotranspiration from surface waters in power plants. iembry-USGS USGSstates2k Replaced by states2k iembry-USGS ie2misc A collection of Irucka Embry's miscellaneous functions (processing .exp and .psf files, statistical error functions, "+" dyadic operator for use with NA, creating ADAPS and QW spreadsheet files, etc.) created while he was a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey (USGS) Contractor and/or USGS employee. iembry-USGS ie2miscfork iembry-USGS states2k This is a data package containing the dataset known as states2k, which is the United States of America in the NAD 1983 Albers projection. ifeldhaus linreg ifellows TestingHistoryIncidence Estimate incidence from testing history and diagnosis data iferres dcda Domain Content Dissimilarity Analysis iferres migenpipeline iferres mirecipe mirecipe - microbial genomics pipeline iferres misp_test iferres pewit Pangenome estimation. iferres phylen Compute a phylogeny using EggNOG database iferres quickMLST An easy way of MLSTyping your genomes in R. iffylaw PIC Permafrost Indices Computing igidrfrg ifrogs ifrogs R package ignacia-rivera Package_fisheries_Barbosa_Thakar_Rivera Package fisheries ignacio82 IMposterior ignaciomsarmiento RATest ignacioq rase igollini lvm4net lvm4net Latent Variable Models for Networks igollini tailloss Estimate the Probability in the Upper Tail of the Aggregate Loss Distribution igraph igraphbook Companion R package for the igraph book igraph nautier Graph Canonical Labeling and Automorphism Group Computation, R package for nauty and Traces igraph rigraph igraph R package igraph vizgraph Graphviz with igraph graphs, from R igutierrezm mypkgr ensayo de paquete en R (no usar) igutierrezm olndictr Diccionario de variables del OLN iiasa iiasaRmarkdown R markdown for IIASA Working Paper ijlyttle AzureDatalakeStore REST API Client for Microsoft Azure Data Lake Store ijlyttle AzureDatalakeStoreAccount ijlyttle AzureMLPlus Additional functions to use with AzureML package ijlyttle AzureOAuth Obtain OAuth2.0 Tokens from Microsoft Azure ijlyttle bsplus Shiny and R Markdown addons to Bootstrap 3 ijlyttle datadict making data dictionaries a little easier ijlyttle fileinfo Consistent file-listing across file-systems ijlyttle fitrbitr ijlyttle ggoctocal Calendar Maps for ggplot2, Inspired by Github Contribution Maps ijlyttle ghentr Templating Functions to Use with GitHub Enterprise ijlyttle groundTemp R package for modeling ground temperatures ijlyttle htmlDocumentIJL A series of html_document() functions ijlyttle httrplus Addons for https://github.com/hadley/httr that one day may be worthy of a PR ijlyttle humidr An R package to make psychrometric (humidity) calculations ijlyttle ieeecomtrade Import IEEE COMTRADE files ijlyttle screenshotr What the Package Does (one line, title case) ijlyttle septimanr Transformation and visualization for weekly things ijlyttle septimr Transformation and visualization for weekly things ijlyttle shinychord Reusable shiny modules ijlyttle shinypod Implementation of shiny modules ijlyttle srlst Serialize Lists into Text-Lists ijlyttle srlze Serialize Lists into Text-Lists ijlyttle tutrRegExp A tutorial for regular expressions, using R ijlyttle user2016docdemo Custom format for rmarkdown ijlyttle vembedr Functions to Embed Video in HTML ijlyttle warrenr A persistently verb for purrr ijlyttle wsd2015 Entry for the United Nations World Statistics Day 2015 Data Visualization Contest ijlyttle xformplus ikashnitsky ik my R package with self-written functions (no consistency, for own use) ikkyle Imisc ikkyle errorizer R Function Errorizer ikoiko88 ggwordcloud A package contains a new geom named geom_word_cloud to visualize word cloud with ggplot2 ikosmidis brRasch Maximum likelihood and bias reduction for fixed-effets Rasch models ikosmidis brglm2 Estimation and inference from generalized linear models using explicit and implicit methods for bias reduction ikosmidis enrichwith Methods to Enrich R Objects with Extra Components ikwak2 APCP Draw Andrews type parallel coordinate plot ikwak2 MTaSPUs Multiple-trait aSPU test based on GWAS summary statistics. ikwak2 aSPU An R package for adaptive sum of powered score test(ASPU) in genetic association studies. ikwak2 aSPUc some C++ aSPU functions that do not pass CRAN tests ikwak2 funqtl An R package for QTL mapping in function valued trait data ilab DNLC DNLC: Differential Network Local Consistency Analysis ilangurudev ApproxMap Implementation of ApproxMap ilangurudev ApproxMapSeq ilangurudev Trials ilangurudev approxmap ilangurudev approxmapR ApproxMAP (APPROXimate Multiple Alignment Pattern mining) is an exploratory data analysis technique used to find maximal approximate sequential patterns from large databases through organization and data reduction. ilapros DoubleRobGam Smooth and robust estimation of mean and dispersion functions in regression models ilapros GOFmeas R package for goodness of fit measures ilapros ilaprosUtils Some useful functions I happen to use ilcapone Mysql ilcapone RPackage ilcapone nuevo ilcapone papa ilgan rgb2yuv ilia-kats imisc miscellaneous iliefadz differentialpathways Taken from Getting Genetics Done ilopezcoto wrfR R WRF post processing tools ilostat Rilostat Tools for ILO Open Data via ILOSTAT bulk download facility or SDMX web service ilostat ilostat Tools for ILO Open Data via ILOSTAT bulk download facility or SDMX web service ilostat ilostatr Tools for ILO Open Data via ILOSTAT bulk download facility or SDMX web service ilovato nevada NEtwork-VAlued Data Analysis ilyaminati rsTaskList imadmali NBAapi R package that documents the NBA API with additional functionality imadmali NBAsportvu R package to mine the half season of SportVU data available online. imadmali item.analysis imadmali nba R package that documents the NBA API imadmali stanode R wrapper for modeling ODEs in Stan. imamhabib simpleuserrole imamhabib spatialClust spatialClust is a R-Package that provide Spatial Clustering using Fuzzy Geographically Weighted Clustering imanuelcostigan RSQLServer SQL Server DBI for R, based on the jTDS driver imanuelcostigan aemo Get price and demand data from AEMO website imanuelcostigan arnie "Arnie" box office records 1982-2014 imanuelcostigan dataonderivatives Easily source publicly available data on derivatives imanuelcostigan fmbasics Financial Market Building Blocks imanuelcostigan fmdates Financial Market Date Calculations imanuelcostigan hadleyverse A package to install packages from the hadleyverse imanuelcostigan iex R bindings to The Investors Exchange (IEX) API imanuelcostigan imanuelcostigan.github.io imanuelcostigan managelocalrepo Manage CRAN-like repo on local network imanuelcostigan pkgnews Access Package NEWS files imanuelcostigan predrcats Predicate Functions with Sane Interfaces and Behaviours imanuelcostigan roxygentest Package that will help test roxygen2 imarkonis scalegram scalegram imarpe imarpe imarpeTools imarpe jjmTools Graphics and diagnostics libraries for SPRFMO's JJM model imarpe path Pelagic Assessment Tools for Hydroacoustics imbforge encodeChIPqc imbs-hl MDRDist Calculate distances using MB-MDR imbs-hl imbs imbs-hl imbsaddins RStudio addins imbs-hl survivalsvm Survival Support Vector Analysis imminfo tcr tcR: an R package for immune receptor repertoire advanced data analysis. immunogenomics masc MASC: Mixed-effects Association testing for Single Cells imouzon MyPackage imouzon SASnatch R and SAS working together through knitr imouzon tikpics Fill your document with TikZ pics imouzon usefulR A personal R package ims-fhs badhacker Analyse code structure and display dependencies using graphs. beta-version! ims-fhs vsim Vereinbarkeits Simulator Fachhochschule St. Gallen in0rdr rfm-pkg inSileco graphicsutils R functions that help creating and editing graphs with R. inSileco letiRmisc letiR miscellaneous functions inSileco refR An R package to get and manage BibTeX/YAML/JSON references inbo INBOmd An R package with a collection of RMarkdown styles and templates inbo INBOmisc Misc R functions for INBO inbo INBOtheme An R package with several ggplot2 themes inbo INLA WARNING! This is a read-only mirror of the INLA package. For the latest version please visit www.r-inla.org. inbo LSVI inbo abvanalysis inbo bird-tracking-etl :bird: ETL for UvA-BiTS bird tracking data inbo dhcurve An R package for automated modelling of diameter-height relations for trees inbo inboggvegan Extended biplot and screeplot functionality for the vegan package inbo inbomisc Misc R functions for INBO inbo inborutils :maple_leaf: Collection of useful R utilities and snippets inbo multimput multimput is an R package that assists with analysing dataset with missing values using multiple imputation. inbo n2kanalysis inbo n2khelper inbo uva-bits-etl ETL for UvA-BiTS tracking data inbo wateRinfo R package to get data from waterinfo.be ineswilms bigtime Sparse estimation of large time series models influxdb influxdb-r R library for InfluxDB infotroph DeLuciatoR Make R plots (closer to) publishable infotroph ggplotTicks Copy axes from bottom to top and left to right sides of a ggplot. ingaschwabe BayesTwin Developmental version of R package BayesTwin ingaschwabe Nature-Nurture-and-Item-Response-Theory ingridas EPICR EPICR injuryepi injuryepi injuryepi injuryepi overdoser Coding for drug overdose inkrement clckhs A basic dplyr SQL-backend for the clickhouse database. innager Umoments Unbiased central moment estimates (R package) innager edgee Edgeworth expansions and high-dimensional data analysis (R package) inquirim inquirim R package to communicate with inquirim API insilico privateEC An R package for Private Evaporative Cooling feature selection and classification and classification with Relief-F and Random Forests insongkim wfe insysbio dbs-package Accessory R functions to support DBSolveOptimum intelligentaccident xreg Xreg intermine InterMineR R package for InterMine intermine intermineR R package for InterMine intermine rintermine R package for InterMine interzoneboy MS-prep Data formatting and EDA for sieve-based MS, MS/MS data interzoneboy sieveFilter introstat ePort Report generation software for course instructors regarding student performance inventionate TimeSpaceAnalysis Statistical tools for socio-analysis of social time-spaces. Includes GDA approaches, time pattern analysis, place chronologies. inventionate factoextraGDA iobis imis R client for IMIS iobis obisclient R client for the OBIS API iobis obistools Tools for data enhancement and quality control iobis rdvark Darwin Core Archive validation iobis robis R client for the OBIS API iobis robis2 R package based on version 2 of the OBIS API iobis rwod R interface to the World Ocean Database iobis worms R package for consuming the WoRMS webservice iordanoffff homework3 Homework for Thursday 17th of October ipa-tys ROCR An R package for visualizing classifier performance (Sing/Sander/Beerenwinkel/Lengauer [2005] Bioinformatics) ipea utilsIPEA Pacote para reunir funções muito utilizadas no IPEA. ipea validaRA Funções para validação de qualidade de Registros Administrativos ipw012 RIVER R package for RIVER (RNA-Informed Variant Effect on Regulation) ipw012 RIVERpkg R package for RIVER (RNA-Informed Variant Effect on Regulation) ircollaborative report Software to generate annual IRC reports irfanalidv NeuroPsy irinagain DAP Discriminant analysis via projections, R package irinapim MVTest iriseekhout Agree iriseekhout Makemissing iriseekhout psfmi predictor selection funciton for multiple imputation irishlouis ggplotSubtitle ironholds humaniformat A human name parser for R irudnyts estudy2 An Implemintation of Parametric and Nonparametric Event Study irudnyts pkgspell Spell checker for R packeges development irwinsnet FIRST_api_R R functions for obtaining FIRST Robotics competition data via HTTP and converting it into R data frames. irwinsnet firstapiR R functions for obtaining data from the FIRST API server. is-R brushingup Brushing points Shiny examples isaac34mi Rprofiling This is a simple package inspired by pandas_profiling but written in R. isaacbain spatinz R package for spatial functions isaacfab FantasySportsDS A repo for fantasy sports data science isaacfab RMetalog R tools to use the metalog probability distribution isaacmichaud GADGET Gaussian Process Approximations for Designed Experiments isaacpeterson offset_simulator isabelfulcher frontdoorpiie Estimation and inference for the Population Intervention Indirect Effect (PIIE) isabellemieling Linreg isanc lmncya2 isarnassiri CMEA CMEA: An R package for Systematic Exploration of Single-Cell Morphological Phenotypes from Transcriptomic Profile isezen rsahra Sahra Dust Transport Research isezen rsezen Various functions to process data isezen rwind Tools to process wind data isglobal-brge BRGEdata Collection of omic data of BRGE isglobal-brge CNVassoc Analysis of CNVs incorporating uncertainty isglobal-brge CTDquerier R package to make queries to Comparative Toxicogenomics Database and download the obtained results. isglobal-brge GCCA Generalized Canonical Correlation Analysis with possible missing data isglobal-brge LOYdata Dataset package including files to illustrate the use of MADloy package (LOY - loss of Y chromosome) isglobal-brge MADloy R package to detect mosaic loss of Y events in SNP array and NGS data isglobal-brge MEAL Methylation and Expression AnaLysis isglobal-brge MultiDataSet Bioconductor package to encapsulate multiple datasets (including BioC omic data types) isglobal-brge R-GADA R implementation of GADA software isglobal-brge SNPassoc Genetic association studies isglobal-brge bayesGen Bayesian estimation of genomic data isglobal-brge brge.omic Collection of BRGE omic data encapsulated in stardard R structures isglobal-brge brgedata Compendium of packages used in BRGE group isglobal-brge co_splicing Methods and data analysis of co-splicing isglobal-brge gcmrec General class of models for recurrent event data isglobal-brge invClust Cluster inversion polymorphism from SNP data isglobal-brge lodregression Regression with independent variables having LOD isglobal-brge mCCA Canonical Correlacion analysis with missing data and individuals isglobal-brge madloy_v1 Get summarized LRR to analyze LRR in association studies isglobal-brge omicRexposome integrating omic data with the exposome isglobal-brge postRexposome Bioconductor package to post-processing rexposome results (enrichment analysis) isglobal-brge rasp Differential Alternative Splicing based on anova multivariate method isglobal-brge rexposome Bioconductor package to characterize, analyze and integrate exposome with omic and disease data isglobal-brge scoreInvHap Inversion haplotype classifier using SNP data isglobal-brge snpfier Inversion haplotype classifier using SNP data isglobal-brge survrec Survival analysis for recurrent event data ishti-du CBCPro ismayc chemistr R functions and R Markdown templates for use in Chem 101/102 at Reed College ismayc izzyuntappd An R data package containing data on all Untappd beer ratings by Chester Ismay from February 2015 to June 2016 ismayc thesisdown An updated R Markdown thesis template using the bookdown package ismmshimc cytutils Cytometry quality control and reproducibility utilities isnaaldilla scorecard isomorphisms try_git isomorphisms webreadr israelvizcaino paquetesR Paquetes de R issactoast R4Tistory issactoast r4issactoast issactoast toolbox4issactoast istresearch popPyramidz use this R package to easily fetch global population statistics and plot it. istresearch surveyCleanR This is an R package for basic survey data cleanup. italo-goncalves geomod3D Implicit 3D geological modeling and geostatistics italo-granato BGGE Package to genomic prediction focused on GE genomic models italo-granato GEmodels A function to fit GxE genomic models italo-granato SnpReady A tool to assist breeders in genomic analysis italo-granato snpReady A tool to assist breeders in genomic analysis italocegatta armade Relatórios mensais e bimestrais da Rede de Monitoramento de Proteção Florestal italocegatta brmap Polígonos de unidades territoriais do Brasil em R Simple Feature italocegatta brnomes italocegatta comp3 an R package for competition index in individuals trees italocegatta etamodel italocegatta fipe italocegatta forestr italocegatta inmetdown Pacote em R para acesso ao banco de dados das estações climaticas automaticas do INMET italocegatta modisdown italocegatta r3pg italocegatta rapidr A R package for RapidEye Images italocegatta suzano Funcoes para uso interno na Suzano itamarmeg FluPneumo Influenza and secondary pneumococcal infection model itawaputtytat puttytat4R Collection of useful "helper" functions itcarroll rslurm itjmt96 Earthquakes R Programming itjmt96 FARS FARS Package in R itpir MatchIt itpir SCI Spatial PSM for R itpir SimTests itpir SimTests_DEPRECATED itpir geoMatch geoMatch is a package for quasi-observational studies in which paired treatment and control units are compared to establish the causal impact of an intervention. It is a wrapper around another package, MatchIt, providing adjustments to account for potential bias due to spatial spillover. itpir geoSIMEX geoSIMEX R Package itsaquestion MyPlot itsaquestion MyUtils itsdalmo R6Frame R6 wrapper for data.frame and data.table itsdalmo officeR Work with R and Office. itsdalmo reporttool itsdalmo reporttoolDT Make "batch" reports from survey data. itsdalmo seamless Work with R and Office. itsdalmo tabulR Generate "quick" tables and plots. itsrainingdata bndata Curated Datasets for Bayesian Networks itsrainingdata ccdr Legacy repo for "Concave penalized estimation of sparse Gaussian Bayesian networks". itsrainingdata ccdrAlgorithm Structure learning for Bayesian networks using the CCDr algorithm. itsrainingdata emokid Make your code more emo itsrainingdata sparsebn Software for learning sparse Bayesian networks itsrainingdata sparsebnUtils Utilities for learning sparse Bayesian networks itssimon sqlservr An R package to bulk load data from R to SQL Server using the bcp utility and to keep sanity when working with long SQL queries in R iugrina glycanr R library for glycan analysis iugrina rgoodies Small toolbox-style utilities for R ivablaze R101 ivalette faRs Building my first R package ivan-rivera RedditExtractoR An R wrapper for Reddit API ivanalaman EDM Exams Database Manager with shiny package ivanalaman lba Latent Budget Analysis for Compositional Data ivanhanigan HutchinsonDroughtIndex The Hutchinson Drought Index reflects agricultural droughts using only rainfall data ivanhanigan TransformSurveyTools TransformSurveyTools ivanhanigan Vally2012-RossRiverRates This is the documenation of code for the paper 'Vally et al 2012' ivanhanigan ddiindexdb ddiindexdb ivanhanigan delphe DatabasE Links for Population, Health and Envrionmental Scientists ivanhanigan disentangle Toolbox for disentangling things ivanhanigan exploratoryanalysistemplate exploratory analysis template ivanhanigan gisviz GISViz R tools. See http://www.ada.edu.au/social-science/gisviz for GISViz tool ivaninkv dstools Tool for easy participation in DS competitions. ivaughan econullnetr ivaughan nullnetr nullnetr iveksl2 bbal Ballin , Ballin iveksl2 visualizethis Out of the box dataset visualizations to quickly yield insight ivicek BidManagementTool ivicek gitFirst ivyleavedtoadflax dfeAPI ivyleavedtoadflax didacticRutabaga ivyleavedtoadflax govstyle Theme for use with ggplot2 for creating government style visualisations ivyleavedtoadflax knn R package offering simple implementation of k-nearest neighbours ivyleavedtoadflax rmd2md R package for converting RMarkdown to markdown for rendering in jekyll. ivyleavedtoadflax scrapeML ivyleavedtoadflax teaplots R package for producing weather plots for tea growing regions. ivyleavedtoadflax vlrr R package offering simple implementation of linear regression with regularisation by optimisation algorithm. iyunj ThinkBusiness iyunj hailueIO IO with DB functions for privater use izahn smargins Like margins in Stata, but simulation-based a la Zelig. izhbannikov decisivatoR R-package to determine if the given data set decisive or not izhbannikov di R package to calculate Deficit Index (DI) izhbannikov haploR haploR: utilities for mining Haploreg and other similar web-based tools izhbannikov rqt rqt: utilities for gene-level meta-analysis izhbannikov rqt.bk rqt: utilities for gene-level meta-analysis izhbannikov rradtools Basic manipulations with RAD sequence data izhbannikov seqMetaPlus izhbannikov spm Utilities to estimate parameters of stochastic process and modeling survival trajectories and time-to-event outcomes observed from longitudinal studies. izhbannikov vartools Small R-package that computes CMC, KBAC and other statistical tests izlude83 week4 Building Data Products Assignment j-peiffer berrystat j1wan dendist R package to calculate distance between two probability density functions j1wan ietkit An R package for inter-event time analysis j1wan intsig j1wan topk An R package to get min/max/argmin/argmax k elements from a vector j23414 jcpackr rpackage of my commonly used functions j2scode NLPStudio j2scode RDataStudio j2scode chronic Chronic Illness & Depression: Comorbidity, Prevalence & Costs j2scode nlpStudio j2scode nlpStudio2 j2scode predictifyR j50n c3w4 Simple statistical tools. This is a homework assignment - please ignore. jMotif GI-R jMotif jmotif-R SAX, HOT-SAX, VSM, SAX-VSM, RePair and RRA in R (Rcpp) ja-thomas MoCap read und process motion capturing data in R ja-thomas OMLbots ja-thomas RTelegram Use telegram bots to send messages from R to your smartphone ja-thomas autoxgboost ja-thomas dlbench Deep Learning Benchmarks Problems in R ja-thomas hyperbandr jaak-s rDEA Data Envelopment Analysis (DEA) package for R with robust unbiased methods. jaakkomadetoja epgwr Error Propagation in Geographically Weighted Regression jabiologo rWind Tools for downloading, editing and transforming wind data from Global Forecast System (GFS). jabiru binr R package for binning potentially unevenly distributed values in a vector into evenly distributed groups (bins). jabiru csvread R package for loading large CSV files. jabranham ledgerReports R package integrating ledger with R jabus tyeRman my personal R package jachan1 addins jachan1 repFxns Functions for Rmarkdown Reports jacintoArias archeospec Analysis of the reflectance spectra from paintings: classification and endmembers. jacintoArias exreport An R package for reproducible research. Analyze your experimental data and generate HTML and PDF reports. jack-thomas uwrfRegression An R package based on UWRF Math 327 - Applied Regression Analysis jackhump RNAmaps An R package for creating sophisticated plots of genomic intersections. jackhump featuremaps An R package for creating sophisticated plots of genomic intersections. jackhump sqtlviztools functions for sQTL visualisation jackiemauro CACE Doubly robust regression repo jackiemauro hurdleIV Repository containing the code for the hurdleIV package jackolney CascadeDashboard Shiny app for interactive HIV care cascade model https://jackolney.shinyapps.io/CascadeDashboard jackolney R-Cascade R package for 'CareCascade' model jackolney baldr Epidemiological modelling in R jackolney cascade C model of the HIV care cascade used by CascadeDashboard https://github.com/jackolney/CascadeDashboard jackolney clustr Scripts for running 'CascadeDashboard' on the MRC Cluster jackolney modelr Epidemiological modelling in R jackpalmer LotameR R package to interact with the Lotame API jackwasey PRISMAstatement jackwasey configrdev Demonstrate that configure script in R package can use the wrong R to determine R_HOME jackwasey icd ICD-10 and ICD-9 comorbidities, manipulation and validation in R jackwasey icd9 Obsolete, please use 'icd' instead for ICD-9 and ICD-10 comorbidities, manipulation and validation in R jackwasey icdData Data for the 'icd' package jackwasey jwutil R utilities jackwasey physiology R package to make physiologic calculations. Initially, this is confined to calculating ideal body weight by various methods and blood volumes. jackwasey rubik jacob-long JTools Miscellaneous R functions of my own making. jacob-long clfe R package for fitting cross-lagged fixed effects models with maximum likelihood jacob-long jtools Tools for summarizing/visualizing regressions, probing interactions, and more jacob-long panelr Regression models and utilities for repeated measures and panel data jacob-long pkgdown-minimal-reprex jacob-ogre AdminLTE 1-function package to include the shinydashboard AdminLTE.css with Rmarkdown docs jacob-ogre ESAListings A small R package and associated R Shiny app for displaying ESA listing information. jacob-ogre ESCindex An R package to build index.html for https://defend-esc-dev.org jacob-ogre LSRanalysis Analysis of Lilaeopsis schaffneriana var. recurva monitoring data from 2007, 2010-2016. jacob-ogre LilaeopsisDrought Code for the analysis of Lilaeopsis schaffneriana var. recurva drought ecology research. jacob-ogre USNVC An R package to access the U.S. National Vegetation Classification (NVC) database. jacob-ogre ch.first.pass Code for "Habitat changes in designated critical habitat, 2001-2011" jacob-ogre discourser jacob-ogre ecosdata An R project for scraping endangered species documents and data from ECOS. jacob-ogre ecosscraper An R package for scraping the U.S. Fish and Wildlife Service's ECOS site. jacob-ogre elasticdumpr A simple R package to interface with taskrabbit/elasticsearch-dump jacob-ogre esacounties R data package of county occurrence data for U.S. Endangered Species Act-listed species. jacob-ogre esadocs Elasticsearch and an app for ESA documents. jacob-ogre gdoc2rmd Convert Google Doc HTML files to Rmarkdown jacob-ogre gitr A set of very simple commands for using git from the R console. jacob-ogre gst-recovery jacob-ogre hcphb Analysis of FWS/NMFS HCP Handbook Draft Revisions jacob-ogre nmfsscraper An R package to scrape documents and information on ESA-listed species from NMFS jacob-ogre ocrerrors Find OCR errors. Hopefully. jacob-ogre open.cpu.test R pkg to test openCPU integration jacob-ogre pdftext pdftext: An R package to extract text from PDFs jacob-ogre recovery.plan.overview Repo to accompany a paper analyzing the age and timeliness of ESA recovery plans jacob-ogre section7.quality Code for the analysis of the quality of FWS and NMFS section 7 consultations jacob-ogre us.geonames An R package to search text for place-names of the US jacobaro bootr Test jacobbien CVXfromR An R package for calling CVX from Matlab jacobbien convexjulia Call Convex.jl from R jacobbien ggb Graph-Guided Banding of the Covariance Matrix jacobbien protoclust Hierarchical Clustering with Prototypes jacobbien simulator An Engine for Running Simulations jacobcvt12 BNPregression Bayesian Nonparametric Regression jacobcvt12 CNPBayesUnitTests jacobcvt12 GP jacobcvt12 RcppMixtureModel jacobcvt12 RcppParallelExample Example of Open-MPI and Rcpp for multiple MCMC chains jacobcvt12 abc Approximate Bayesian Computation jacobcvt12 anRpackage jacobcvt12 bm1_project Course Project for Bayesian Methods 1 jacobcvt12 boilerplate jacobcvt12 hlm.comparison jacobcvt12 ldp Local Dirichlet Processes in R jacobcvt12 twR Tracy-Widom Distribution jacobhample Test jacobhample integrateIt_Hample Jacob Hample's integrateIt package jacobjaf polnet jacobkap UCR R package to use the FBI's Uniform Crime Report (UCR) datasets 1960:2015 jacobkap UCR.ColumnNames Fixes Column Names for Uniform Crime Report "Offenses Known and Clearance by Arrest" Datasets jacobkap asciiReader Lets R read ASCII files using SPSS setup files jacobkap boxoffice jacobkap censusGeography Converts census geographic (city, state, region, etc.) codes into the location names jacobkap consentdecree jacobkap crime jacobkap fastDummies Fast creation of dummy variables jacobkap genderNames Client for genderize.io API which gives the gender of names jacobkap nameSexRace Find the Sex or Race of a Given Name (First Name for Sex, Surname for Race) jacobkap phillyvotes jacobkap spssSetup Uses SPSS Setup files to read an ASCII file into R jacobkap zipcodes Provides city, county, state, county FIPS codes, and state FIPS codes for 40569 zipcodes in the United States jacsor ARMtree Package for k-sample comparison using accept-reject Markov trees jacsor ARMtree2 Experimental version of ARMtree. Under development jacsor DMMT Divide Merge Markov Tree model (old - see ARMtree) jacsor MPG jacsor MPK Mixtures of Perturbed Kernels jacsor MRS jacsor grove jadahlke hlmer HLM7-style hierarchical linear models in R jadahlke psychmeta Psychometric meta-analysis toolkit jadonwagstaff kdigo Uses Kidney Disease: Improving Global Outcomes (KDIGO) guidelines to detect Acute Kidney Injury (AKI). jadonwagstaff pkpd R package used to process data for pharmacokinetic and pharmacodynamic modeling. jae0 aegis jae0 aegis.env jae0 bio.base jae0 bio.bathymetry jae0 bio.coastline jae0 bio.ecomod jae0 bio.groundfish bio.groundfish jae0 bio.habitat jae0 bio.indicators jae0 bio.models jae0 bio.plankton jae0 bio.polygons jae0 bio.remote.sensing jae0 bio.simulation jae0 bio.snowcrab bio.snowcrab jae0 bio.substrate jae0 bio.surveys jae0 bio.taxonomy jae0 bio.temperature jae0 bio.template jae0 bmvm jae0 carstm carstm jae0 ecmd data assimilation for lbm jae0 ecmei E jae0 ecmenv jae0 ecmgis jae0 ecomodUtils Utilities to develop in ecomod jae0 ecomod_coastline No description or website provided. jae0 ecomod_taxonomy No description or website provided. jae0 emaf ecosystem modelling and assessment framework jae0 emaf.base jae0 emaf_base jae0 emei E jae0 emenv jae0 emgis jae0 groundfish No description or website provided. jae0 hivemod Divide and conquer (hive-like) space-time modelling and prediction problems. jae0 lbm Lattice-based models -- simple divide and conquer space-time modelling and prediction. jae0 lstfilter Local Space Time Filtering methods to model and predict process-constrained space-time models. jae0 netmensuration Net mensuration utilities. jae0 snowcrab snowcrab jae0 stm stm jae0 stmdat stmdat jae0 stmenv jae0 stmr jae0 stmv stm jae0 stmv_dev jae0 utility No description or website provided. jaeyoon0508 EZplot jafarilab CINNA Deciphering Central Informative Nodes in Network Analysis jafarilab IMMAN Interlog protein network reconstruction by Mapping and Mining ANalysis jagm03 twanovapp Tests for effects of individual factors as well as their interaction in two-way factorial designs of replicated spatial point patterns. jagonzalb SNSequate R package for test equating jaime11 Transcription-Factor-Footprinting jairomr Modis jairomr efflux jakejh metapredict metapredict R package jakejh zeitzeiger zeitzeiger R package jakemil lmpermutation R package for permutation test in linear model with nuisances variables jakesherman easypackages Easily load/install multiple packages (CRAN, GitHub, +) jakesherman jakemisc A set of misc R functions/data jakesherman missr Easily add/remove/impute missing values (NAs) jakesherman packages Load or install multiple R packages jakewalker56 jml Personal R package of various useful utilities jakezydek ssues ssues package jakmes onlineVAR R package to adaptively fit lasso vector auto regression jakob-r geo2smoof jakob-r mboBench Benchmark suite for MBO jakob-r mlrHyperopt Easy Hyper Parameter Optimization with mlr and mlrMBO. jakob-r mlrOverfit jakob-r rsmac rsmac - use SMAC to optimize functions in R jakobbossek JBmisc Different helper functions for R. jakobbossek Rargs Argument parser for R jakobbossek acotsp Ant Colony Optimization for the Travelling Salesperson Problem jakobbossek cmaesr Covariance Matrix Adaption - Evolutionary Strategy in R. jakobbossek ecr Outdated: New repository https://github.com/jakobbossek/ecr2 jakobbossek ecr2 ecr: Evolutionary Computation in R (version 2) jakobbossek githubpagestest jakobbossek grapherator A modular multi-step graph generator jakobbossek locu Lorenz curves with ggplot2 and different disparity measures in R. jakobbossek mcMST Algorithms to solve the multi-criteria minimum spanning tree problem (mcMST) in R jakobbossek netgen Generating random networks in R jakobbossek noir Unifying interface for numerical optimization in R. jakobbossek rmoco Multi-Objective Combinatorial Optimization jakobbossek rpn R interpreter for expressions in (reverse) polish notation. jakobbossek salesperson Algorithms to solve and features to characterise TSP problems. jakobbossek scc This package provides several different Shewart control charts and is aimed for statisticians working with R in the wide area of quality control. jakobbossek smoof Single- and Multi-Objective Optimization Test Functions jakobludewig miscR Miscellaneous R functions and scripts for everyday use jakobschumacher epiet Analyse infectious disease data. A package for european programme for intervention epidemiology training jakobschumacher epietr epietr jakubecp pokusr first attempt to create a package (testing workflow) jakubkuzilek oulad An R package containing OULAD dataset. jakubmie MACC jakubnowicki GeoMorphoVar jakubnowicki RetroGeoMorph jakubnowicki artificialmorpho jakubnowicki geomorphotest jakubnowicki labstatanalyst Funkcje do analizy danych LASiE jakubnowicki labstatgraph Pakiet wspomagający generowanie wykresów do raportów LASIE jakubnowicki morphoutils jakyzhu MACAU2 An R package designed for generalized linear mixed model inference in genomic sequencing studies jalapic apportR Apportionment Methods jalapic arduino jalapic behavseq Sequential Methods for the Behavioral Sciences jalapic compete Analyzing competitive interaction data jalapic curleylab tools for curleylab jalapic engsoccerdata English and European soccer results 1871-2017 jalapic hierformR Hierarchy Network Formation jalapic musicnotationR R package for producing music notation social graphs jalapic ratingsR Ranking and Rating Methods jalapic scrabblr Scrabble Data Package jalapic simpletable Making simple tables in RMarkdown jalapic sweep sweep htmlwidget for R jalapic unicorno jalsalam EIAapi A wrapper for the Energy Information Administration (EIA) API in R jalsalam JRAtools Package of my utility functions jalvesaq DataEntry Make it easier to enter questionnaire data jalvesaq VimCom *Deprecated* package used to intermediate the communication between Vim and R jalvesaq colorout Colorize R output on terminal emulators jalvesaq descr Descriptive statistics for R jalvesaq nvimcom *Deprecated* package used to intermediate the communication between Neovim and R jamaas VarPasMpiExamp Example package to demonstrate method of passing variable values to foreach loop within an R package jamaas jammwe Minimum working example of building package with nested functions jamaas qmradoparr minimal working example of nested functions in parallel foreach loops jamaas toymod3 3rd edition of toymodel, using R, doMPI, foreach in an R package jamaas toymod4 Toy model package to use nested functions within nested foreach statements, using DoMPI backend jamebluntcc myRtools a collection of bio graphic tools jameelalsalam testpackage This james-e-barrett bed Bayesian Epiallele Detection (BED) james-e-barrett test1 james-gyzhu feature_selection Distributed Feature Selection jamesdalg HiClink HiClink: a scalable, flexible, robust framework for HiC data jamesdiao clinvaR R Package: annotated gene-level VCFs and ancestry-informed analyses from ClinVar data jamesdunham concatenate Human-friendly text from unknown values in R jamesdunham dgirt Development of dynamic group-level IRT code jamesdunham dgo Dynamic estimation of group-level opinion in R jamesdunham dgodata Data used by dgo in examples and vignettes jamesdunham multiline Read multiline fixed-width-formatted text in R jamesdunham qsurvey A toolkit for working with the Qualtrics platform and its survey data in R jamesfeigenbaum extractbib jamesfeigenbaum jjfPkg Personal R Package jamesgitting rootility jamesgitting routil jamesgitting rpgply No description or website provided. jameshay218 AthenaSwan R package for the Athena Swan project jameshay218 antibodyKinetics Repository for code relating to the ferret antibody kinetics modelling project jameshay218 driftSim R package for the binding avidity adaptation and antigenic drift project jameshay218 driftSimApp Shiny application for the antigenic drift simulation jameshay218 episize R-package for epidemic final size calculation jameshay218 lazymcmc jameshay218 mathfuncs Repository for all of my mathematical functions. Used to create an R package jameshay218 mcmcJH Generic random walk MCMC algorithm for parameter inference jameshay218 serosim R-package for serological survey simulation jameshay218 serosim2 Second package to continue to fluscape serological data work jameshay218 vaxedemic Optimal global allocation of vaccinations during a pandemic jameshay218 zikaABM Rcpp code to run an agent based mode using the zika microcephaly model jameshay218 zikaProj R package for the zika model jameslhao dbgapr_dev Test dbgapr, a dbGaP data organizer jamesliley cFDR-common-controls This repository contains R functions to compute the 'Conditional False Discovery Rate', a method to analyse genome-wide association studies (GWAS) for related diseases originally proposed by Andreasson et al (2013), in the case where the two GWAS have shared controls.These functions widen the scope of the existing technique and enable improved p… jamesliley chessboard jamesliley subtest A package for testing for differential genetic basis between two putative disease subtypes jamesmartherus finalProject jamesthomson R2D3 R package to create D3.js Visualisations jamesthomson SpotifyAPI R package containing a series of functions that access the Spotify API jamesware denovolyzeR An R package for statistical analyses of de novo genetic variants jamesware knitauthors R package to compile & knit scientific author & affiliation lists jamesyili rTensor rTensor v1.2 jamgreen lehdR a package to grab LEHD data in support of city and regional planning economic and transportation analysis jamgreen lehdr a package to grab LEHD data in support of city and regional planning economic and transportation analysis jamieRowen gaugeR jamiec-ye visDIABLO Interactive web-based visualization application for DIABLO models jamovi Rjamovi The jamovi R package jamovi jmv jamovi for R jamovi jmvbaseR A jamovi module which provides analyses from the base R packages jamovi jmvcore The jamovi core for R jamovi jmvexamples Examples which demonstrate the building of analyses for jamovi jamovi jmvtools An R package which makes it easy to develop modules for jamovi jamovi walrus Walrus - Robust Statistical Methods jan-glx knnDemix R package that provides a non-parametric hypothesis test for the mixture coefficient of a mixture jan-glx pertInv janantos readSSAS SSAS connector for R jandix cbpR An API wrapper for the Congressional Bills Project API. jandob ccf Canonical Correlation Forest jandziak mc.glmnet Multicore glmnet computation. jandziak textmining Google Summer of Code -Integration text mining and topic modelling tools for R jandziak tmpTm temporary repository for text mining janek01 Linreg janek01 testPackage janfait mappdmp queries data from Mapp's Data Management Platform (DMP) jangehlen hmgbTools Aggregation of scripts for genomics jangorecki Rbitcoin R & bitcoin integration jangorecki anchormodeling Anchor Modeling metadata manager. AM in-memory Data Warehouse instances. Dashboard in shiny. Identity Management instances. jangorecki big.data.table Distributed parallel computing on data.table jangorecki data.cube OLAP cubes R data type jangorecki dtq data.table query jangorecki dwtools Data Warehouse, Business Intelligence, data integration helpers. Unifies database connectors to DBI, RJDBC, RODBC, csv. Easy managing multiple simultaneous db connections. MDX like queries on cube class object. Data modelling helpers, denormalization of star schema and snowflake schema, basic normalization. And more. jangorecki glen No description or website provided. jangorecki logR Extended logging solution for R jangorecki pg Postgres utilities for R language jangorecki r.gitlab.ci Gitlab-CI for R packages jangorecki r.pkg.gitlab.ci jangorecki rbitcoind R interface to bitcoin daemon jangorecki shinyBI Business Intelligence shinyApp janhoo benthos Taxon Specific Conversion Factors for Mass, Energy, and Composition janhoo crecs Comfy Multivariate Regression and Cross-validation with Spatial Objects janhoo gcm Use GRASS colormaps in R raster plots janhoo quansdm Quantitative species disrtibution modelling with cross-validation janhoo worms scraping taxonomic information from www.marinespecies.org janikmiet bricks janivaltteri conv2d Very simple 2d convolution package for R janjansen86 ptrackr ptrackr - a package to track individual particles through 2D- and 3D-space jankcorn stockPortfolio Version 1.2 from https://cran.r-project.org/web/packages/stockPortfolio/ . All code written by David M. Diez. jankislinger salespredict Prediction of sales - competition janlorenz rankoptimalweights janmatula GenDP Package for processing raw sequencing data from second generation sequencing and tools for searching in large DNA databases using SSAHA algorithm. janmatula genDP Package for processing raw sequencing data from second generation sequencing and tools for searching in large DNA databases using SSAHA algorithm. jannes-m RQGIS RQGIS - integrating R with QGIS jannes-m velo An R-package for bicycle-related calculations jansila backup_myPack jansila jStable jansila mscPack package for my MSc dissertations jansila myStable_backup jansim WG-SuchR Eine R/Shiny App um Daten von der Website WG-Gesucht zu scrapen und Statistiken dazu anzuzeigen jansim WizRd jantonelli111 2dWaveletsIrregular jantonelli111 HDconfounding High-dimensional confounding adjustment using continuous spike and slab priors jantonelli111 Irregular2dWavelets R package to implement 2D wavelet decompositions for irregularly spaced and irregularly shaped data januarharianto respR respR - Analyse, convert, and automate respirometry-related data janusvm ggjanus Personal package with extra ggplot themes janusvm tidybudget Budgeting with tidy data janusza RapidRoughSets RapidRoughSets package for R janusza RmRMR R package implementing mRMR feature selection framework for DISESOR project janusza RoughSets RoughSets package for R System janzzon difftimeOffice Duration within office hours between timestamps janzzon difftime_office Duration within office hours between timestamps janzzon qfix misc quick fix functions janzzon readxlExtras janzzon sweidnumbrExtras Check Swedish personal and organization numbers, wrapper for pkg sweidnumbr japilo colorednoise R package for simulating and analyzing temporally autocorrelated populations. jarad FluSight An R package containing functions used in the CDC Flu Forecasting competition jarad HelmersLab An R package for utility functions used by Matt Helmers and his lab jarad ISDSWorkshop An R package for the Introduction to R for Disease Surveillance workshop for the International Society for Disease Surveillance jarad ISUmonarch An example of create an R package for data storage jarad IowaSalaries An R package for Iowa Salaries jarad LegoSets An R package for dealing with lego sets jarad MMWRweek An R package to translate between dates and MMWR weeks. The package is modeled after the ISOweek package. jarad Paschold2012 An R package containing the Paschold 2012 data jarad STAT401EngLab jarad ToyotaSiennaGasMileage R package containing a dataset of gas usage for a 2011 Toyota Sienna XLE jarad compoisson Conway-Maxwell-Poisson Distribution jarad dnd5e A repo for D&D 5e info jarad flashcardData An R package with flashcard data jarad heterosis An R package to perform heterosis jarad ilog An R package for taking logarithms intelligently jarad mileageClub An R package for mileage club functions jarad smcUtils utility functions for performing sequential Monte Carlo (SMC) otherwise known as particle filtering jarad spacious jarad tlpl Tau-leaped particle learning jardimViniciusC BioNetStat BioNetStat jaredbrewer mutantCall jaredhuling jcolors A set of color palettes I like jaredhuling personalized Methods for subgroup identification / personalized medicine jaredlander GraphConvert Utilities for converting graphs to varying types jaredlander HivePlot Package for calculating the positions of nodes in a hive plot jaredlander OrientExpress R package to interact with OrientDB jaredlander Text-Message-Analysis jaredlander TextInfo R package for extracting text information into a network jaredlander coefplot Plotting model coefficients jaredlander join Faster unique and join operations jaredlander lab2014 jaredlander mapping Extra helper functions for mapping. jaredlander resumer Package for building resumes with R jaredlander useful a package of handy, useful functions jaredlander wordpressr An R package for using the WordPress API and integrating RMarkdown jaredo mhsmm mhsmm: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences jaredo test jarioksa GO Unconstrained Gaussian Maximum-Likelihood Ordination jarioksa biogeo Producing stuff for lectures on biogeography jarioksa ecostudy Ecology 101 study material jarioksa gravy R package for gradient analysis of community data, including HOF models jarioksa natto An extreme vegan package of random, experimental and alien code jarodmeng bigrqueryext Extension to the bigrquery package jarodmeng cloudstorageR An interface to Google's Cloud Storage from R. jarodmeng driveR jarold87 R-Glib jaromilfrossard clustergraph R code to perform cluster mass test on multidimentional data. Clusters are computed on time and space neighborhood. jaromilfrossard permuco R package for permutation test in linear model with nuisances variables jaropis sad_tools The R code main library used by the applications in the PCSS R-SAD software; Kod R głównej biblioteki używanej przez aplikacje PCSS R-SAD jaropis shinynarzedzia tools for my shiny apps; narzędzia do moich aplikacji Shiny jaroslav-kuchar fpmoutliers Algorithms for detection of outliers based on frequent pattern mining jaroyle SCRbayes SCR code for JWM paper jaroyle oSCR oscar jaroyle scrDesign jarrais Consegui jarrais PacoteJA jarrais PkgJony jarrais Segundo jarrod-dalton balance Covariate Balance Assessment among Groups in Observational Studies jarrod-dalton causalloop Tools for dynamically creating causal loop diagrams jarrod-dalton discretetime Tools for manipulating messy temporal data jarrod-dalton dynamo Tools for Modeling and Simulating Multivariate Dynamic Systems jarrod-dalton jsd Covariate Balance Assessment using the Jensen-Shannon Divergence jarrodolson StravaR A simple package to provide access to Strava's REST API and convert into R Structures. jarutis smoothr jasdumas dumas The Personal R Package of Jasmine Dumas :package: jasdumas shinyGEO Gene Expression Omnibus Analysis with Shiny - jasdumas shinyLP A R package for Bootstrap Components to make Landing Home Pages for Shiny :globe_with_meridians: jasdumas shinyintro An htmlwidget for the Intro.js library jasdumas ttbbeer An R Dataset Package for US Beer Statistics From TTB 🍺 jasenfinch HRfiemsWorkflow Data analysis workflow for FIE-HRMS jasenfinch MFassign Molecular formula assignment for high resolution metabolomics jasenfinch MSMSproc Spectral processing of tandem mass spectrometry data jasenfinch OrbiFIEmisc Miscellaneous functions for the analysis of FIE-HRMS data jasenfinch OrbiFIEproc An R package for processing FIE-HRMS data jasenfinch binneR An R package for spectral binning of FIE-HRMS metabolomics data jasenfinch binneRlyse An R package for spectral binning and accurate m/z extraction for FIE-HRMS metabolomics analyses jasenfinch hrm Easily install, load and update R packages for high resolution metabolomics analyses jasenfinch metaboData An R package containing example metabolomics data sets jasenfinch metaboReports Automated report generation for high resolution metabolomics analyses jasenfinch metaboVis Tools for visualising metabolomics data jasenfinch metaboWorkflows R workflows for metabolomics analyses jasenfinch metabolyseR Methods for pre-treatment, classification, feature selection and correlation analyses of metabolomics data jasenfinch mzAnnotation An R package containing tools for putative annotation of accurate m/z jasenfinch profilePro Wrappers for processing data from metabolomics profiling experiments jasenfinch pubchemPIP An R package for putative ionisation product querying of the Pubchem database jashu beset Best Subset Predictive Modeling jashu corxplor Interactive tools for exploring correlation matrices jashu itrak Tools for processing eye-tracking data jashubbard edfR an R package for importing EDF files from Eyelink eyetrackers jashubbard itrackR an R package for high-level analysis of eyetracking data jasminefish000 kernelEstimation jasmyace BTPD Programs to organize the digitizing of Black-Tailed Prairie Dog Habitat. jason-huling rstash File and Object Storage Abstraction for R jason-morgan dynnet Latent space models for static and dynamic networks jason-p-pickering bjorkholmsvagen23 jason-p-pickering data-pack-importer jason-p-pickering datim-validation Datim validation scripts jason-p-pickering nmccGraphs jason-p-pickering pmtct_myanmar jason-p-pickering rdhis2 jasonacollins bayesTFR1 jasonelaw ORDEQWaterQualityCriteria jasonelaw RIVPACS An R package for fitting and predicting from RIVPACS-type models jasonelaw nrsa R package for calculating habitat metrics from the National Rivers and Streams Assessment protocol jasonfischer rivSurveyR Processes ADCP matlab files exported from River Surveyor Live jasongraf1 JGmisc Miscellaneous R functions jasonhilton ggfan Fan plots for plotting distributions in ggplot2 jasonmtroos rook jasonmtroos tarsir No description or website provided. jasonserviss ClusterSignificance jasonserviss ClusterSignificanceExtras jasonserviss RNAseqFunctions Enge Lab RNA sequencing Functions jasonsignolet football European professional football data from Kaggle jasonxu90 bdsem EM algorithm for birth-shift-death processes jasonxu90 splitFeas R package implementing majorization-minimization algorithms for split feasibility problems jasonzyx APaSPU jasonzyx LRTH jasonzyx WaSPU jasonzyx aSPC jasonzyx approxaSPU jasp-stats JASPTools jasp-stats jasptools R package delivered with jasp-desktop that simplifies developing and testing analyses jaspercooper distancematrix Tools for creating and analyzing distance matrices using spatial data in R. jaspercooper sampleselector Select a study sample using spatial and other selection criteria. jaspercooper surveybuilder Make surveys and randomized survey experiments in R. jaspershen MSannotator MSannotator from xMSannotator jaspershen MetCleaning Automatic and integrated tool for data cleaning and statistical analysis of large scale MS-based metabolomics data. jaspershen MetFlow jaspershen MetNormalizer MetNormalizer is used to normalize large scale metabolomics data. jaspershen MetProcesser MetProcesser is used to process large scale MS based metabolomics data. jaspershen MyShiny jaspershen RC-paper-1 jaspershen SXTerrorbar Add error bar jaspershen SXTintersect jaspershen SXTlength Rpackage for SXTlength jaspershen SXTmsmatch SXTmsmatch is used to match different batch data jaspershen SXTpca jaspershen SXTpcaplot jaspershen SXTpls PLS analysis jaspershen SXTpls2 jaspershen SXTrsd jaspershen SXTsetwd Set work directory using window directory without changing \ to /. jaspershen SXTuni Univariate test for SXT jaspershen SXTwhich.max jaspershen analysisReport Analysis report template jaspershen combits complete bits jaspershen errorDisplay Display the error of functions jaspershen getWorklist Generate worklist for MS data acquisition jaspershen installBio install package from bioconductor jaspershen ms2Plot Plot MS2 spectrum jaspershen peakAnnotation Annotate peaks as isotopes, adducts or metabolites according to seeds. jaspershen showTags2 jaspershen surui code for surui jaspershen sxtTools Small tools of SXT jaspershen zhangyt All the code for zhang yiting from his boyfriend jatangne Linreg javadch rquis R Package that enables access to XQt APIs javenrflo BMSMC R Package to perform analyses described in "Bayesian Multiple Comparisons and Model Selection" by Andrew A. Neath, Javier E. Flores, and Joseph E. Cavanaugh javiercara DisRegETSII Funciones y datos para la asignatura "Diseño de Experimentos y Modelos de Regresión" de la ETSI Industriales de la Universidad Politécnica de Madrid javierfajnolla GCMcompareR javierluraschi hexkart hexkart: Kart simulation for model training javierluraschi kartmodels javierluraschi kartsim hexkart: Kart simulation for model training javierluraschi pixels Tools for Working with Pixels in R javierluraschi spark.hello Scala to Spark - Hello World javierluraschi sparkhello sparkhello: Scala to Spark - Hello World javierluraschi sparklyudf sparklyudf: Scala UDF from R - Example javierluraschi sparkwarc Load WARC files into Apache Spark with sparklyr javierluraschi sparkworker sparkworker: R Worker for Apache Spark javimarlop ocpu-radarplot-sochi OpenCPU apps javimarlop spdynmod R library and data: Spatio-dynamic wetland plant communities model javimarlop spdynmodocpu openCPU GUI for the spdynmod library javybai ActivityIndex Read and process raw accelerometry data; calculate summarizing metrics such as Activity Index. jaydennord nord-package package for EDPS 854 course project jayemerson STV jayemerson ShinyHelper This used to be shinier jayemerson YaleToolkit Data exploration tools from Yale University jayemerson big.char Extends bigmemory's big.matrix to support big vectors of character strings. jayemerson big.data.frame Extend big.char and bigmemory's big.matrix to support larger-than-RAM data.frame-lilke objects in R. jayhesselberth bigwrig Read bigWig files in R jayhesselberth nihexporter An R data package for NIH EXPORTER data jayhesselberth pkgdown-search test pkgdown searching jayhesselberth pkgdown-search-unstable testing purposes jayhesselberth tidytime Tidying functions for time series data jayhesselberth valr Genome Interval Arithmetic in R jayjacobs ggcal Generate simple calendar plots using ggplot2 jayjacobs verisr R package for working with data stored within VERIS framework jayleetx ANES2016 Package to plot some 2016 ANES data jaysonvirissimo deliberate-practice jaysonvirissimo theMangaGuideToStatisticsInR No description or website provided. jaytimm corpusTasks An R package including functions for common corpus linguistics tasks jaytimm corpusdatr A collection of linguistic corpora jaytimm corpuslingr an R package for complex corpus search and web-based corpus creation jaytimm geodatr Some useful geo-computational resources jaytimm lexvarsdatr A collection of experimental linguistics data sources, and some query functions. jaytimm lingData A collection of linguistic resources, including a full, moderately sized and balanced corpus. jaytimm lingResources A collection of linguistic data resources jaytimm newmexicoK12 A collection of geographies and performance data for K-12 schools in New Mexico jayverhoef MMIGeoStat No description or website provided. jayverhoef SSN jayverhoef SpAReco jayverhoef fluvgrm jbaxx ccharter Control Charts made easy jbecu ridgeAdap Package ridgeAdap for R jbedo pmt Poisson Margin Test implementation in R jbelsky TyphoonPlot JAB R Package TyphoonPlot jbergenstrahle SpatialEye jbfagotfede39 aquatools Package aquatools for freshwater managers jbhender MPrOVE jbhender camtrap Inference for campera trap data jbiesanz fabs Functions for Applied Behavioural Sciences in R jbindman prostate-project A single package synthesizing the work of Yates Coley jbintz biodiverse jbisanz MicrobeR Handy tools for Microbiome analysis in R jbkunst d3wordcloud ☁️ htmlwidgets for D3js Word Cloud Layout jbkunst gridstackr An implementation of gridstack.js for R jbkunst highcharter R wrapper for highcharts based on htmlwidgets jbkunst jbkmisc No description or website will be provided. jbkunst mat-mat-pub jbkunst rchess ♛ Chess package for R jbkunst riskr jbkunst riskr2 Rework of riskr because order is needed (and fun) sometimes jbkunst test jbkunst treeki jbkunst treekir jblumenau twfyR R binding for TheyWorkForYou jblumenau usefulFunctions some useful R functions jboscomendoza ineeR Funciones para analizar las bases de datos de Excale y Planea. jbousquin USLE Universal Soil Loss Equation R spatial package jbracher hhh4addon jbryer DATA606 Statistics and Probability for Data Analysis jbryer DataCache Package to maintain a data cache. jbryer PSAboot Bootstrapping for Propensity Score Analysis jbryer PSAgraphics2 An R Package to Support Propenisty Score Analysis jbryer Rd2markdown Package for creating markdown versions of R package help in Rd format. jbryer Rgitbook Gitbook for R Markdown jbryer ShinyDemo Package for running Shiny apps like R package demos jbryer StatToolkit R Package for supporting teaching statistics courses. jbryer TriMatch Propensity Score Matching for Non-Binary Treatments jbryer aparmd R Markdown Template for APA Documents jbryer geocode An R package containing a collection of functions to geocode street and IP addresses. jbryer ipeds R package for interfacing with the Integrated Postsecondary Education System (IPEDS). jbryer irutils An R package containing utilities for institutional researchers. This package is also used to support the Introduction to R and LaTeX document. jbryer likert Package to analyze likert based items. jbryer makeR An R package to help manage R projects (e.g. Sweave reports) where multiple versions are created based upon a single source repository. For example, a monthly report where each versions is identitcal with the exception of easily definable parameters (e.g. date ranges for data extraction, title, etc.). This package is not meant to assist with pac… jbryer multilevelPSA R package for estimating and visualizing multilevel propensity score models. jbryer naep An R package for analyzing data from the National Assessment of Educational Progress. jbryer pisa R package containing data and utility functions for the 2009 Programme for International Student Assessment. jbryer psa Propensity Score Analysis with R jbryer qualtrics This package utilizes the Qualtrics API to interface with the Qualtrics survey system. jbryer retention Functions to calculate and visualize retention and completion rates. jbryer ruca Rural Urban Commuting Area Codes (RUCA) provide rural and urban classificaitons of zip codes based upon census tracs. jbryer sqlutils Utilies for managing libraries of SQL queries. jbryer timeline Create timeline plots using a grammar of graphics. jbrzusto motus R package for users of data from https://motus.org jbrzusto motus-R-package jbrzusto motusClient fetch data from the motus server jbrzusto motusServer R package to operate a server that processes data for https://motus.org jbrzusto sensorgnome-R-package R package for using telemetry data; soon to be replaced by http://github.com/jbrzusto/motus jburkhardt RAdwords Loading Google Adwords Data into R jburkhardt RCriteo Loading Criteo Campaign Data into R jburkhardt RHelperFunctions Collection of R helper functions jburos GoogleVis Working copy of GoogleVis, some mods jburos biostan Materials for BioC-2016 workshop entitled "Introduction to Bayesian Inference using Stan with Applications to Cancer Genomics" jburos mutsigNMF jburos reticulatedf Utilities for converting pandas.DataFrame to an R data.frame using reticulate jcapelladesto geoRge geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics jcapelladesto isoSCAN R Package to automatically process GC-QQQ-CI-MS data for stable isotope labelling experiments jcardenas14 genBART genBART jcardenas14 genBart jcarlis3 ecoinfo Assorted Tools for the Management and Analysis of Ecological Information jcarlis3 umbrella Utilites for evaulating the effectiveness of conservation reserves, specifically those created for umbrella species. jcasse icueval This custom R package provides various functions to evaluate several metrics related to icu data. Some functions are written in C++ for speed. jcastagna ggDiagnostic Model Diagnostics in GGplot. jcatanoc TallerR_ jcbain cubicsplines jcbeer fsgl R package with functions to fit penalized least squares regression models using a combination of penalty terms encouraging smoothness (fused lasso / total variation penalty), and/or sparsity (L1 and group lasso penalties). Designed specifically for analysis of 2 or 3 dimensional neuroimages. jcfaria ScottKnott The ScottKnott Clustering Algoritm - R Package jcfaria TukeyC Convencional Tukey Test - R Package jcfaria bpca Biplot of Multivariate Data Based on Principal Components Analysis - R package jcfaria fdth Frequency Distribution Tables, Histograms and Poligons - R Package jcfisher hkestimator Hardiman and Katzir Estimator for RDS chains jcfisher latentnetDiffusion LatentnetDiffusion jcgaasch LaRA Latent Regression Analysis jcgaasch PVPIAACL Plausible Values estimation with the PIAAC-L data jcheng5 bubbles d3 Bubble Chart for R jcheng5 countdown Countdown timer for R Markdown (like for presentations with exercise/break times) jcheng5 d3scatter jcheng5 envmunge jcheng5 extedit jcheng5 fasttags Fast version of htmltools::doRenderTags jcheng5 ggutils jcheng5 googleCharts Google Charts bindings for the Shiny web framework for R jcheng5 knitsql jcheng5 leaflet-shiny Leaflet bindings for Shiny jcheng5 pipecomposer jcheng5 pqantimalarials jcheng5 rasterfaster Faster operations for Raster objects in R jcheng5 rxtools jcheng5 stackdump Simple utility for R on Linux or Mac, that handles the SIGQUIT event by dumping the R call stack to stderr and exiting. jcheng5 superzip jchiquet PLNmodels jchiquet aricode R package for computation of (adjusted) rand-index and other such scores jchiquet fusedanova development repository for the fused-Anova Rp ackage jchiquet spring SPRING R package : Selecting Primary Relationships IN the General linear model jchrom DSAN02 Grafické metody do předmětu DSAN02 Pokročilé metody analýzy dat v neurovědách jchrom aparep APA reports jchrom dataglue Use data as a glue jchrom datamake Create Makefiles for data analysis in R jchrom elf jchrom extr Export for Trello using R jchrom haiku jchrom jchmisc My R setup (debs + pkgs) jchrom jcmisc jcmisc jchrom logreport Plotting user activity from Moodle in R using ggplot2. jchrom moodler jchrom qbuildr Make arithmetic operators work with character vectors jchrom rcat Useful stuff jchrom trello R API for Trello jchrom trelloR R API for Trello jchrom trelloRtests Informal tests for the trelloR package jchrom trellor R API for Trello jchrszcz gemmR General Monotone Model in R jcizel EBAResultAnalysis Analysis of EBA Stress Tests jcizel FredR FredR: R Interface to Federal Reserve Economic Data API jcizel GeneralUtilities General R Utilities jcizel SDMXWrappers A collection of wrappers on top of RJSDMX package jcizel SovereignCrisis Set of helper tools in the Sovereign Risk project. jcizel WorldBankAPI R Wrapper Functions for World Bank API jcizel doctemplates Templates for quick production of Word reports from within R jcizel ecbapi European Central Bank Statistical Data Warehouse API jcizel emacs_config-JC jcizel est2table est2table provides a set of R routines that facilitate easy conversion of estimation objects into nicely formatted tables. jcizel eventstudy R routines for event studies jcizel highchartR A htmlwidget wrapper around Highcharts and Highstock APIs jcizel imfutils Utilities to pre-process and load IMF datasets jcizel instantShiny Instantly scaffold modular Shiny dashboards. jcizel rtable rtable: Scaffold LaTeX and HTML Tables from R Regression Objects with Ease jcizel scatterMatrixD3 R htmlwidget wrapper around the D3 scatterplot matrix jcizel snlutils Quick conversion of SNL Financial excel templates into R datasets jcizel texutils LaTeX utilities jcizel wbapi Interface to World Bank API jclopeztavera ggoecd ggplot2 extension with OECD-esque geoms and themes jclopeztavera jcprp JC's Personal R Package jcms2665 ACP Análisis de Componentes Principales / Principal Component Analysis jcms2665 MultJoin Trabajando con varias bases de datos / Working with multiple databases jcms2665 joinENOE This package is designed to work with datasets from the National Occupation and Employment Survey (ENOE) jcms2665 svyINEGI Paquete para generar precisiones estadísticas con bases de datos del INEGI jcookqualtrics qconjoint qconjoint jcookqualtrics qmaxdiff qmaxdiff jcpayne mice-models Models of intermediate complexity for ecosystem assessment jcpernias RPIAAC jcpetkovich rsax Fast implementations of the SAX family of preprocessors. jcpetkovich rspatiotemp An R package for building Spatio Temporal Pattern Networks. jcpsantiago FARSr Part of coursera's Advanced R Specialization jcpsantiago ISIcalc An R package providing functions to calculate fasting and OGTT-based insulin sensitivity indexes. jcquiroz hakeRead Reading output from southern hake assessment jcrodriguez1989 MIGSA jcrodriguez1989 MIGSAdata jcrodriguez1989 pmcERR PubMed Central Entity Relation Recognition jcrodriguez1989 shinyWYSIWYG jcvdav bvi Biological Value Index jcvdav cooperatR R package containing Dan Ovando's database for cooperatives from his 2014 paper jdanielnd bayesic Repository with MCMC algorithms implemented in R language. Developed during Undergraduate Research project. jdanielnd crash R package that purposely crash an R session. WARNING: intended for test. jdanielnd gnlsmsn GUI for nlsmsn R package jdanielnd mangaba-r jdanielnd slfm Bayesian Factor Model jdanielnd tsgen R package that provide tools to generate time series jdbcode LandsatLinkr An automated system for creating spectrally consistent and cloud-free Landsat image time series stacks from a combination of MSS, TM, ETM+, and OLI sensors jdbcode MSScvm Automated cloud masking for Landsat MSS images jdblischak test-travis jdblischak workflowr Organize your project into a research website jdeboer RGA-1 A Google Analytics API client for R jdeboer ganalytics Interact with Google Analytics using R jdeboer gcalendar Google Calendar API client library for R jdeboer gprediction Google Prediction API client for R jdeboer grealtime Google Analytics Real-time API client for R jdeines salustools jdide 625.495-timeseries jdidion DEUtils Utilities for differential expression testing jdidion LikeThis R package that adds regular expression infix operators jdidion Rre2 R package that wraps the re2 C++ regular expression library jdidion fancyplots Some useful plots for genomic data, in base R. (beta) jdidion geneticsFormats R functions for working with different genetics formats. (beta) jdidion intensities Utilities for working with raw genotype array intensities. (unsupported) jdidion knitrtools Library of utilities for use in RMarkdown documents. (beta) jdidion labmath Functions for wet bench lab math. (pre-alpha) jdidion miscUtils Miscellaneous utility functions I use often jdidion statTests Implementations of statistical tests that I can't find in another R package jdieramon BSgenomeCarietinum jdieramon hIndex Get a graphical representation of the h Index over the years for a given author jdossgollin GridPrecipCompareR Calculate key features of extreme rainfall from arbitrary gridded products jdossgollin HysplitFloodTrajectories IN PROGRESS CHECK BACK SOON jdossgollin JamesR R functions that I use all the time, in one (documented) location jdossgollin NCEPLibrary Create a fast, accessible data library for the NCAR/NCEP reanalysis data you use frequently jdossgollin WaterClimData Water and Climate Data: Fast, Easy, Tidy jdossgollin cpcRain R package to access, process, and store data from the CPC Unified Gauge-Based Analysis of Global Daily Precipitation jdreyf ezlimma Wrapper R package around limma jdreyf sybilxf R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling utilizing the R modeling package sybil. jdrudolph PerseusR R package for easy interop between Perseus and R jdstorey edge R package for identifying differentially expressed genes from genome-wide gene expression profiling studies. jdstorey qvalue R package to estimates q-values and false discovery rate quantities. jdtatsch inmetr A R-package to Import Historical Data from Brazilian Meteorological Stations jdthorpe ajvr An thin wrapper for the AJV Json Validator for R jdwilson4 Data100_Spring_2017 jdwilson4 ESSC This folder contains the ESSC method for Community Extraction in R jdwilson4 MultilayerExtraction An R package to identify strongly connected vertex-layer communities in multilayer networks. jdwilson4 NetSurv An R package for network surveillance via the degree corrected stochastic block model jdwor vesselr R package for gradient- and vessel-related tools for 3D volumes jdyeakel paradox Portfolio_Paradox jdyen growmod Fitting and validating growth curve models in R jean9208 Autocosmos R package for extracting data from www.autocosmos.com.mx jean997 bvpolar jean997 cfdrSims jean997 fret jean997 jadeSims jean997 jadeTF R package for Joint Adaptive Differential Estimation (JADE) jean997 rcc jean997 rccSims R package for running simulations in "Rank conditional coverage and confidence intervals in high dimensional problems" by Jean Morrison and Noah Simon jean997 sherlockAsh jeancharlesravon FactoryFunctions jeangolay IDmining Intrinsic Dimension for Data Mining jeanimal heuristica Heuristic functions in R, such as Take The Best, unit-weighted linear (Dawes' rule), plus helper functions. jeanmanguy jmanguyR personal package jeanmarcgp ResilientPortfolio Resilient Portfolio package repository jeanmarcgp mlStocks jeanmarcgp xtsanalytics Analyze and develop predictive models for investment portfolios jeanmarie-eu border Border shapefile converted into S4 object. UTF-8 format jeanmarie-eu catchment Catchment shapefile converted into S4 object. UTF-8 format jeanmarie-eu city City shapefile converted into S4 object. UTF-8 format jeanmarie-eu crumbify Get url syntax of a remote service. jeanmarie-eu gingeR Get datasets from remote servers jeanmarie-eu gridding Grid mesh converted into S4 object. jeanmarie-eu limonade limonade focuses on making easy the extraction of datasets from any format. jeanmarie-eu limonadeST limonadeST makes easy the extraction of space-time datasets. jeanmarie-eu metnoradarnowcasting metnoradarnowcasting jeanmarie-eu metnosenorge Get url syntaxes for metnosenorge jeanmarie-eu puddingR puddingR focuses on getting data from remote service. jeanmarie-eu rabarbRa Manipulate data.frame and related files (json,...) and minimizing memory use jeanmarie-eu river River shapefile converted into S4 object. UTF-8 format jeanmarie-eu spatialManip Make spatial objects easy to manipulate jeanmarie-eu structify Create and manipulate easily large space-time dataset. jeanmarie-eu sugaR sugaR helps you in settling handle of request for remote services (thredds, ... etc). jeanmarie-eu timeManip R package to manipulate dates and minimize memory use jeanmarie-eu wsklimaR Get easy access to stations registered by the Norwegian Meteorological Institute jeanmarielepioufle border Border shapefile converted into S4 object. UTF-8 format jeanmarielepioufle catchment Catchment shapefile converted into S4 object. UTF-8 format jeanmarielepioufle city City shapefile converted into S4 object. UTF-8 format jeanmarielepioufle crumbify Get url syntax of a remote service. jeanmarielepioufle gingeR Get datasets from remote servers jeanmarielepioufle gridding Grid mesh converted into S4 object. jeanmarielepioufle limonade limonade focuses on making easy the extraction of datasets from any format. jeanmarielepioufle limonadeST limonadeST makes easy the extraction of space-time datasets. jeanmarielepioufle metnoradarnowcasting metnoradarnowcasting jeanmarielepioufle metnosenorge Get url syntaxes for metnosenorge jeanmarielepioufle puddingR puddingR focuses on getting data from remote service. jeanmarielepioufle rabarbRa Manipulate data.frame and related files (json,...) and minimizing memory use jeanmarielepioufle river River shapefile converted into S4 object. UTF-8 format jeanmarielepioufle spatialManip Make spatial objects easy to manipulate jeanmarielepioufle structify Create and manipulate easily large space-time dataset. jeanmarielepioufle sugaR sugaR helps you in settling handle of request for remote services (thredds, ... etc). jeanmarielepioufle timeManip R package to manipulate dates and minimize memory use jeblundell multiplyr multiplyr R package jeblundell travistest jebyrnes hadsstR R Library for working with HadSST Data jebyrnes meowR Data and methods to utilize Spalding et al.'s marine ecoregions of the world jebyrnes multifunc A package for the analysis of how drivers affect multiple functions in a system. jechave mfp first R package jedalong PathInterpolatR An R Package for Interpolating Trajectories jedalong wildlifeDI R package for analysing interactions in wildlife telemetry data. jedalong wildlifeTG R Package for Time Geographic Analysis of Wildlife Tracking Data jedazard IRSF Interaction Random Survival Forest (IRSF): an ensemble survival tree approach to reveal variable interactions in association with time-to-events outcomes jedazard MVR Mean-Variance Regularization: a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data jedazard PRIMsrc Bump Hunting by Patient Rule Induction Method for Survival, Regression and Classification jedick canprot Differential expression of proteins in cancer jeeweshjha Mastering-Software-Development-in-R-Capstone jeff-goldsmith BayesFoSR jeff-goldsmith example.package jeff-goldsmith gfpca jeff-goldsmith kinematics jeff-goldsmith vbvs.concurrent jeff-hughes paramtest R package for varying parameters in simulations or other iterative processes jeff-hughes reghelper R package with regression helper functions jeff-hughes simulateR R package for running simulations jeff-regier MiniMiniMaxUQ Mini-minimax uncertainty quantification for emulators jeffbhasin dptviz Visualize differentially methylated regions detected by iDPT jeffbhasin genomesyncr R package to sync and parse UCSC Genome Browser table data jeffbhasin goldmine Annotate genomic contexts and discover functional element enrichments jeffbhasin handy Handy R Functions jeffbhasin methylaction Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq) jeffbhasin snpscope Compute overlap of SNPs with regulatory elements and export to CSV or the UCSC Genome Browser jeffbone First-Package Package for Managing Factors jeffchang5 ISISTwitter ISISTwitter jeffchang5 LearningD3 jeffchang5 MusicMap jeffchang5 Resume jeffchang5 SQLiter jeffeaton alpha-mortality jeffeaton anc-overdispersion jeffeaton epp Implementation of EPP model for HIV epidemic estimates jeffeaton eppspectrum age-structured version of EPP model jeffeaton svyincid Extend R survey package to analyse household survey-based HIV incidence estimates jefferis IgorR R package to load Igor Pro waves (ibw) and experiment files (pxp) in R jefferis RANN R package providing fast nearest neighbour search (wraps ANN library) jefferis RANN2 Fast Nearest Neighbour Search (Rcpp wrapper for libANN) jefferis bmp A simple R package to read Windows BMP format images jefferis brainbaser Programmatic Access to the Brainbase Drosophila Neuroanatomy Website jefferis cmtkr R wrapper package for the Computational Morphometry Toolkit (CMTK) jefferis dendroextras Extra functions to cut, label and colour dendrogram clusters jefferis elmr Support for working with light and electron microscopy fly brain data jefferis flycircuit R package flycircuit jefferis flylight Functions for working with Janelia FlyLight confocal images jefferis flynblastscores R package to provide RESTful interface via opencpu to NBLAST scores for fly neurons jefferis fmfio R package to read the 'FlyMovieFormat' (fmf) video format jefferis frulhns R package frulhns to accompany "A bidirectional circuit switch reroutes pheromone signals in male and female brains" jefferis gphys R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro jefferis gscraper Basic web scraping - designed to generate local cache of remote website jefferis lreg What the package does (short line) jefferis manifoldreduction Manifold Dimension Reduction after Chigirev and Bialek jefferis morgenstemning Colorblind-safe color maps for R jefferis nabor R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions jefferis nat NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons. jefferis nat.amira Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software jefferis nat.as NAT: Wrapper for informal neuroanatomy AnalysisSuite codebase jefferis nat.utils R package providing utility functions in support of NeuroAnatomy Toolbox (nat) jefferis p1neurons Dataset of Drosophila male-specific P1 neurons jefferis paperutils R package with utility functions to support preparation of journal articles jefferis pkgusingigraph A test package to highlight problems setting igraph options jefferis rcatmaid R package providing API access to the CATMAID web image annotation tool jefferis readbitmap R package to identify and read bitmap images jefferis readobj Fast reader for Wavefront OBJ 3D scene files jefferis runu R wrapper for the unu image processing tool jefferis scanimage read and analyse 2 photon images from ScanImage jefferis testdataalias Test data objects with aliases jefferis testplot3d Test export of plot3d jefferis vfbr R Package to Access the Virtual Fly Brain project API jefferislab Rgridengineswarm Simple R tools for creating and managing swarms of workers on Grid Engine jefferislab bftools jefferislab flywatch Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig jefferislab jimpipeline jefferislab lhns Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster jefferislab nat.flybrains Support for Drosophila bridging/mirroring registrations in R jefferislab nat.nblast R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package. jefferislab nat.templatebrains Support for 3D template brains used as targets for image registration jefferislab physplitdata shahar's versioned raw data and db dump jefferys BioFiles Work with bioinformatic files jefferys DataRepo Manage a large data file repository jefferys Exception Classed exception object hierarchy jefferys FusionExpressionPlot Plot Expression Profiles for Fused Genes jefferys JefferysRUtils My bag of tricks for R coding jefferys RefactR Refactor R code and tests jefferys SamSeq Work with aligned reads from a SAM file jefferys SeqToolsSRJ This is a collection of functions I use to do sequencing informatics. jefferys Some-App jefferys Some-Test jefferys cwl Common workflow language support jefferys fusionExpressionPlot jefferys javascript-playground jeffjjohnston RStudioConsoleRender Provides an RStudio addin command to render the current Rmarkdown document in the console jeffkimbrel crossStitch Converts an image to a cross stitch pattern jeffkimbrel jakR Miscellaneous R Functions jeffrey-franc anomr An implementation of Analysis of Means for R jeffrey-franc radmac2 Calculate and plot surge capacity metrics from a SurgeSim database jeffreyat M2EFM jeffreyevans GeNetIt R package for spatial graph-theoretic gravity modelling jeffreyevans rfUtilities R package for random forests model selection, inference, evaluation and validation jeffreyevans spatialEco R package for spatial analysis and modelling of ecological systems jeffreyhanson bayescanr This R package runs BayeScan jeffreyhanson fish-genetics jeffreyhanson geotrellis geotrellis: spatial data analysis using geotrellis jeffreyhanson leafier This repository contains an R package to render large datasets in leafet jeffreyhanson marxan This R package contains decision support tools for reserve selection using Marxan. jeffreyhanson raptr raptr: Representative and Adequate Prioritisation Toolkit in R jeffreyhanson rgurobi Solve optimisation problems using the commercial Gurobi software package jeffreyhanson structurer This R package runs Structure analyses jeffreyhanson tensorflow-examples jeffreyhanson unmarkedExtra enchancements to the unmarked R package jeffreyhorner JudyEnv JudyEnv provides a hashed environment using Judy Arrays jeffreyhorner MingSWF R graphics device for Flash via Ming jeffreyhorner Rook A web server interface for R jeffreyhorner envestigate R package to interrogate environments jeffreyhorner gearman R interface to Gearman jeffreyhorner raconteur telling stories with data jeffreyhorner ralite A simple robust iterative web server for R jeffreyhorner redcap R interface to REDCap (http://www.project-redcap.org/) jeffsocal mzh5 Wrapper to XCMS to Create a consistent R List Object or HDF5 file jeffsong9 ODNT jeffsong9 emoji jeffsong9 manhwa jeffwong GeoProjection Geographic Projections in R jeffwong TimeProjection Time Projections in R jeffwong fastVAR R package for Vector Autoregression jeffwong glmnet R package glmnet for estimating lasso and elastic net jeffwong hierarchical_df Turn csvs with hierarchical structures into JSON jeffwong imputation R package for data imputation. Fills missing values in a numeric matrix jeffwong pdist Distance functions on subsets of matrices jeitziner TTMap R Software Package jelber2 rGO2TR jelee626 ttesthw jellily PCAseq jelsema CLME Constrained Linear Mixed Effects jelsema RRSM Methods for reduced rank spatial models. jemilianosf GrisLab jemus42 qmtut Small R package for teaching purposes in undergrad psychology jemus42 tRakt Rudimentary trakt.tv APIv2 client in R. No OAuth, just getting data. jemus42 wurstmineR Experimental R package for working with a Minecraft server (i.e. Wurstmineberg) jenfb bkmr Bayesian kernel machine regression jenitivecase inspectr jennasimit MTFM Bayesian multinomial stochastic search with sharing scale jennasimit MTFMextra jennguyen1 jn.general R Package for Analysis and Wrangling jennguyen1 scriptR R Package for Scripting jenniferfranks FSQN jenniferthompson ClusterBootMultinom A suite of functions to streamline multinomial logistic regression using clustered bootstrapping, including calculating predicted probabilities and their 95% confidence limits. jenniferthompson ClusterMultinom Suite of functions to make the process of fitting multinomial logistic regression models with clustered data, as well as extracting and visualizing meaningful results from those models, as painless as possible. jenniferthompson JTHelpers A package of helper functions for my own frequent use. jennybc bingo Generate Bingo cards with R. jennybc candy candy survey data jennybc cellranger Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification jennybc excelgesis Critical explanation or interpretation of ... Excel spreadsheets jennybc foofactors Make Factors Less Annoying jennybc frogs Data from the Calaveras Jumping Frog Jubilee jennybc gameday Testing homework and peer review workflow for STAT 545 gameday package jennybc gapminder Excerpt from the Gapminder data, as an R data package and in plain text delimited form jennybc gh-testing jennybc gitbook-test jennybc githug Interface to local and remote Git operations jennybc googlesheets Google Spreadsheets R API jennybc googlesheets2 Temporary repo and package for a googlesheets reboot jennybc jadd RStudio addins jennybc jane Just testing something that baffles me jennybc reed jennybc refactor Make Factors Less Annoying jennybc reprex Render bits of R code for sharing, e.g., on GitHub or StackOverflow. jennybc repurrrsive Recursive lists to use in teaching and examples jennychungpy earthquakes jensenlab raptor jenswirf ductwork Scheduler for jobs jenswirf stopwatch Stopwatch is a light-weight RStudio add-in to facilitate timing chunks of code. jentjr gwstats Tools for plotting and analyzing groundwater data jentjr manager Tools for plotting and analyzing environmental data jenzopr hlap Hoelpis library of amazing plots. This repository contains custom functions to plot data from proteomics experiments. Functions are tailored for the use within the MPI-HLR. jepusto ARPobservation Tools for simulating different methods of observing behavior based on alternating renewal processes jepusto Pusto Miscellaneous data analysis and simulation tools jepusto SingleCaseES Effect sizes for single-case designs jepusto clubSandwich Cluster-robust (sandwich) variance estimators with small-sample corrections jepusto scdhlm An R package implementing the methods in Hedges, Pustejovsky, & Shadish (2012, 2013) and Pustejovsky, Hedges, & Shadish (2014). jeradhoy MsuSustainabilityDashboard No description or website provided. jeradhoy msuwcRouting jeremiaheb rvc New implementation of the rvcstats package, which produces summary statistics for the South Florida Reef Visual Census jeremiedb AddinExplore AddinExplore jeremiedb PredictionEngine Demo opencpu as a prediction engine for xgboost and mxnet jeremydmorris spotifyconnect jeremyhengjm GibbsFlow Sequential Monte Carlo samplers that use Gibbs flow transport jeremyhengjm debiasedhmc jeremymcrae cifer CNV inheritance from exome read-depth jeremymcrae mupit De novo mutation recurrence significance testing jeremymcrae publishedDeNovos R data package for published de novo variants from exome and genome sequencing studies of children with developmental disorders jeremymcrae recessiveStats repository for analysis of recessive genes jeremyrcoyle PEVerify Persistent Efficiency Auto M&V model jeremyrcoyle delayed Dependent delayed computation for R jeremyrcoyle gentmle Handles the bookkeeping for general TMLEs, allowing you to specify novel TMLEs as estimation and update functions. jeremyrcoyle gentmle2 Revised gentmle package to support different approaches jeremyrcoyle mangolassi jeremyrcoyle opttx opttx - Optimal Treatment Estimation jeremyrcoyle origami origami - Cross-validation Framework jeremyrcoyle sl3 New version of SuperLearner jeremyrcoyle tltools script automation tools jeremyrcoyle tmle3 tmle3 jeremystan aargh Easily Expose R Functions to Command Line Arguments jeremystan args Easily pass command line arguments into R applications jeremystan tidyjson Tidy your JSON data in R with tidyjson jernejjevsenak dendroExtra Provides novel dendroclimatological methods, primarily used by the Tree-ring research community. jernejjevsenak dendroLib Library with nonlinear methods for analyzing dendroclimatological data jernejjevsenak dendroTools dendroTools github repository jeroen RAppArmor R interfaces to Linux and AppArmor security methods jeroen ftest Test package for fortran output jeroen httpd jeroen imwidgets HTML widgets for viewing images jeroen ipfs R bindings to IPFS jeroen js Tools for Working with JavaScript in R jeroen opencpu OpenCPU system for embedded scientific computation and reproducible research jeroen openssl OpenSSL bindings for R jeroen testcxx jeroen unix R bindings to system utilities found in most Unix systems jeroen webp R bindings for libwebp jeroen webutils Utility functions for web applications jeroenclaes tweetCorp tweetCorp: An R package to work with Twitter corpora jeroenjanssens rscl R Scripting at the Command Line. Like a rascal. jeroenjanssens tapkeer R interface to Tapkee, a library for dimensionality reduction jeroenooms JJcorr Git repo for the JJcorr package jeroenooms JSlibs JSlibs R package jeroenooms Mobilize Mobilize R package jeroenooms Ohmage Ohmage R package jeroenooms RAppArmor R interfaces to Linux and AppArmor security methods jeroenooms RObjectTables Don't use this! it is only to illustrate a problem! jeroenooms RProtoBufUtils RProtoBufUtils jeroenooms V8 Embedded JavaScript Engine for R jeroenooms apps R package for managing applications jeroenooms asantest Test ASAN on OS-X jeroenooms awk WIP jeroenooms base64 jeroenooms bcrypt Wrapper for bcrypt in R jeroenooms brotli jeroenooms cheerio Bindings to cheerio JavaScript Library jeroenooms commonmark High Performance CommonMark and Github Markdown Rendering in R jeroenooms curl A Modern and Flexible Web Client for R jeroenooms encode R package for encoding objects into JSON jeroenooms fib fibonacci in R, C++ and JavaScript jeroenooms git Bindings for libgit2 jeroenooms gpg Bindings to gpgme for R jeroenooms icu Unicode Text Processing in R jeroenooms interactivity cran-interactivity jeroenooms ipfs R bindings to IPFS jeroenooms jose Javascript Object Signing and Encryption for R jeroenooms js Tools for Working with JavaScript in R jeroenooms lmergm lmergm R package jeroenooms magick jeroenooms markdownit Bindings to markdown-it JavaScript library jeroenooms minimist R binding to minimist JavaScript library jeroenooms mongolite Fast and Simple MongoDB Client for R jeroenooms opencpu OpenCPU system for embedded scientific computation and reproducible research jeroenooms opencpu-legacy This version is no longer maintained. Switch to "opencpu" repository. jeroenooms opencpu.demo-legacy opencpu.demo jeroenooms opencpu.encode opencpu R object encoder jeroenooms opencpu.tools some tools for the opencpu project jeroenooms openssl OpenSSL bindings for R jeroenooms otr jeroenooms protolite Fast and Simple Object Serialization to Protocol Buffers jeroenooms rclang jeroenooms rjade R Bindings to the Jade Templating Engine jeroenooms rsvg SVG renderer for R based on librsvg2 jeroenooms sodium R bindings to libsodium jeroenooms spatialstuff jeroenooms ssh jeroenooms stringi Cleaned up version of stringi jeroenooms sys Powerful replacements for base::system2 jeroenooms test Test stuff in R jeroenooms travis Travis CI Client for R jeroenooms webp R bindings for libwebp jeroenooms webutils Utility functions for web applications jeroenooms xpdf This package is deprecated in favor of the 'pdftools' package jeroenooms xslt Extension of xml2 package for xsl transformations jerryzhujian9 bz bio Zhu's miscellaneous R functions jerryzhujian9 bzR bio Zhu's miscellaneous R functions jerryzhujian9 ezR ez Zhu's miscellaneous R functions jerryzhujian9 ezmisc ez Zhu's miscellaneous R functions jerryzhujian9 zmisc Zhu's miscellaneous R functions jeslipp tabletools Utilities to handle count matrices jespermaag SwedenMap jessicabeyer rjdotchartr R package that produces dotchart with right justified axis labels jessievb IDseq R-package to analyse data from the ID-seq technology. jestarling starUtils Tools for project setup and report creation. Based on keithUtils by Keith Baggerly. jestarling starlib My functions, code snippets and examples. jestarling varstar TAMU STAT 685 - Fall 2016 - Variable Star Classification R Package jesusdaniel graphclass jewellsean LZeroSpikeInference Exact Spike Inference Via L0 Optimization jfaganUK pii R Package for the Political Independence Index jfaganUK rucinet An R package to interact with UCINET files jfisher-usgs Grid2Polygons Convert Spatial Grids to Polygons jfisher-usgs ObsNetWQ jfisher-usgs ObsNetwork Optimization of Observation Networks jfisher-usgs RNWIS National Water Information System: R Interface jfisher-usgs RSurvey Geographic Information System Application jfisher-usgs Trends Trend Analysis of Monitoring Network Data jfisher-usgs gsgen USGS general-purpose functions and datasets jfoadi crone Structural crystallography in 1D jfoadi cry An R package for dealing with statistics in structural crystallography jfpalomeque PDM jfpalomeque pandora jfq3 QsRutils R Functions Useful for Community Ecology jfq3 RDPutils R Utilities for Processing RDPTool Output jfq3 ggordiplots Make ggplot Versions of Vegan's Ordiplots jframi ggr jframi multipass.pls jframi snpclust jframi ziplinR jfukuyama adaptiveGPCA jfukuyama phyloseqGraphTest jfukuyama treeDA jgabry QMSS_package R package for Greg Eirich's QMSS Courses at Columbia University jgabry RHhelpers jgabry bayesplot bayesplot R package: plotting for Bayesian models jgabry loo loo R package: Efficient approximate leave-one-out cross-validation and WAIC for fitted Bayesian models jgabry ppcheck ppcheck R package for graphical posterior predictive checks jgalgarra kcorebip jgellar mgcvTrans Transformation bases for mgcv jghenry square jgilfillan keyringr R package for decrypting passwords encrypted using Gnome Keyring jgrew ccmewqi jgrew rArcREST jguerrero77 RPSelfServiceAPI R API for RavenPack Self Service Platform jgx65 hierfstat the hierfstat package jhamburg itdashboard Code to Analyze the Governments IT Dashboard jharcum CBPstats This package includes customized functions that enables the user to perform trend analyses using long-term monitoring data from the Chesapeake Bay Program. jharcum wqGateway Water quality data extraction jhavsmith startmrca An R package to estimate the timing of selection for a beneficial allele. jhbadger cipphyloseq Add on routines to the R "phyloseq" package developed by the C jhelvy jhelvyr A bunch of useful functions and settings for working in R. jhidalgocarrio allanvar A collection of tools for stochastic sensor error characterization using the Allan Variance technique originally developed by D. Allan jhmaindonald qra-R-package jhmarcus bvashr jhoffjann nmmso.R NMMSO: The R Implementation jhoffjann nmmso_benchmark Benchmarking Suite to test https://github.com/jhoffjann/nmmso.R jholderieath repColrepRow R package containing two functions to repeat columns or rows of matrices. jhollist autocrop R package to autocrop image files jhollist cardigans Color palette for R that uses the colors of Mr. Rogers cardigans jhollist condprob2 Second version of conditional probability analysis jhollist dadjoke jhollist data_carpentry_spreadsheets jhollist elevatr An R package for accessing elevation data jhollist gdaltest test travis with gdal jhollist goatscape jhollist lakemorpho jhollist manuscriptPackage Template for writing manuscripts as an R package jhollist miscPackage Starting my own package of miscellaneous functions jhollist nlmd National Lake Morphometry Database jhollist pellys Team Stats for Pelly's Players jhollist proj4shortcut R package with easy to remember names for many commonly used proj4strings jhollist quickmapr An R package for quickly mapping and navigating spatial data jhollist testpackage jhollist tider process tide data jhonnybarahona Gcmulti Paquete de R que permite realizar gráficos de control multivariante jhooge BioViz Biomarker Identification Visualizations jhorner PopCon R package for ranking R packages jhoupt sft Systems Factorial Analysis in R jhoyda psychscore R functions for reverse scoring and analyzing psychometric tests jhsiao999 Humanzee Tools for statistical analysis of genomics data jhsiao999 ashbun modeling single cell abundance jhsiao999 flowMap jhudsl alexar A mirror of Jeff Allen's AlexaR package jhudsl crsra A package for cleaning and analyzing Coursera on-demand data jhudsl matahari 🔎 I Spy With My Little Eye jhudsl shinyauth Easily use oauth 2.0 authentication for arbitrary apis in your shiny apps. ji10bhatt stackoverflowR jian13579 HutchinHill jian13579 mapstu jian13579 names jianan qtlintv QTL interval estimation jianan qtlpvl testing of pleiotrophy vs close linkage jiang-hang rcnmap draw china province with specified color jiang-hang rstatscn R interface for stats.gov.cn jiang-hang rwp R package for wordpress and related doc generation jianhong ATACqc ATAC sequencing Quality Control jianhong ATACseqQC ATAC-seq Quality Control jianhong InPAS Identification of Novel alternative PolyAdenylation Sites (PAS) jianhong NADfinder Call wide peaks for sequencing data jianhong cleanUpdTSeq This package classifies putative polyadenylation sites as true or false/internally oligodT primed jianhong dagLogo Visualize significant conserved amino acid sequence pattern in groups based on probability theory jianhong diffPeaks detect the difference of peaks jianhong motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence jianhong trackViewer A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot jianxiaoyang RareDiseases jianzih causalA16 Quantitative 3 project jiewpeng coursera-building-r-package-project jiho autoplot Automatic plotting with ggplot jiho checkboxTreeInput jiho chroma A R package to handle colors. jiho discr Drifting In Situ Chamber User Software in R jiho ecotaxar R package to query EcoTaxa databases and process the output jiho ncdf4helpers jiho nppen Non-Parametric Probabilistic Ecological Niche from Beaugrand et al 2011 in R. jiho rst A new procedure to optimize the selection of groups in a classification tree jiho soundclass Signal classifier for sounds jiho yssr Your Static Site in R jiho zooprocessr jihuilee VCERGM jiji6454 TRYY remote repo try jiji6454 compReg Compositional data regression jiji6454 foofactors Make Factors Less Annoying jillbo1000 EZtune R package EZtune for download jillianderson8 cydr An R package to aid in the cleaning of agricultural data. jimb3 Seminar jimhester BiocInstaller2 jimhester S4issue45 I package demonstrating https://github.com/r-lib/pkgload/issues/45 jimhester autoinst Automatically install packages when they are missing jimhester available Check if a package name is available to use jimhester benchthat Track performance benchmarks for a package over time jimhester bioc2016 What the Package Does (Title Case) jimhester bloom R Bloom filter implementation using Rcpp bindings for dabloom. jimhester completeme WIP jimhester covr Test coverage reports for R jimhester dplyrJDBC JDBC driver for dplyr jimhester examplePrototype jimhester flickrr Minimal R API for flickr jimhester fstrings Python style fstrings for R. jimhester gmailr Access the Gmail RESTful API from R. jimhester highlite A Highlighting Library For R jimhester knitrBootstrap A framework to create bootstrap styled HTML reports from knitr Rmarkdown. jimhester lambda Simple anonymous functions jimhester lintr Static Code Analysis for R jimhester lookup Lookup R full function definitions, including compiled code, S3 and S4 methods. jimhester perlrer Input perl regular expression, get perl results in R! jimhester predpipe Predict the next pipe function from the previous functions in the chain. jimhester primerTree PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs jimhester printr No description or website provided. jimhester regulaR Regular expressions for humans, a port of Ruby's Regularity library to R (see https://github.com/kevinushey/rex for current development) jimhester remoteExample jimhester sparseAHC Agglomerative hierarchical clustering for sparse similarity matrices. jimhester subsetr Drop-in replacements for `[.data.frame` and `subset.data.frame` with robust non-standard evaluation jimhester surveillance mirror of the surveillance package for testing jimhester test2 jimhester testCovr testing package for covr jimhester testUnload jimhester testing What the Package Does (Title Case) jimhester testr What the Package Does (Title Case) jimhester typeCheck The typeCheck package automatically adds type checking code when types are annotated. jimhester types Types for R jimhester withr Methods For Temporarily Modifying Global State jimjonesbr sdd Semantic Datasource Descriptor jimmyday12 fitzRoy jimmyg3g myfirstpackage jimtyhurst codesamplerr Snippets of R code for testing and demonstrating functionality available in R packages. jimtyhurst hate_speech_detection_for_twitter Explores public data sets regarding detection of offensive language on Twitter. jimvine confinterpret confinterpret R package jimvine rcellosaurus R functions for the Cellosaurus dataset jimvine rctsimple Simple Analysis of Outcome Data from Randomised Controlled Trials (RCTs) jing1020 healthData-analytics-package jingge326 LaTiP jingjin1018 anetimeseries This R package contains functions used to detect anomalies jingmafdu TestBMN Testing binary Markov networks jingql cdcstats Statistics in infectious diseases for primary CDC in China jingshuw adaFilter jingshuw descend jingwyang AnceTran AnceTran1.0: R package for TF-binding evolution analysis based on ChIP-seq data jingwyang Initial.test jinhuali globalPM25 jinhyunju confeti R package with instructions how to run CONFETI confounding factor correction for eQTL analysis jinhyunju eQTLtools Function bundle for eQTL analysis jinhyunju icreport Personal code repo for running Independent component analysis on gene expression data in R. jinhyunju picaplot An R package for visualization of Principal / Independent Component Analysis. jinimp zhbit7 The packages about the regression jinjinzhou ITR.Forest ITR-Tree is used to generate individualized treatment rule (ITR) for both randomized clinical trail data and observational study jinjinzhou ITR.Tree ITR-Tree is used to generate individualized treatment rule (ITR) for both randomized clinical trail data and observational study jinlee86 bems_analysisr_package jinyung SDMbase jinyung barnacle jinyung otolith Classification of fish otolith images using R jipp3r nddspiro.R R package to extract spirometry data from an ndd Easyware XML file jirikadlec2 snow-data-fusion Testing the use of crowdsourcing data (Strava and Garmin GPS tracks) for snow cover mapping jirikadlec2 waterml R package for getting and analyzing data from any WaterOneFlow web service on any Hydroserver. jirkalewandowski gitlabr an R client for the gitlab API jirotubuyaki CRPClustering CRPClustering: An R Package for Bayesian Nonparametric Chinese Restaurant Process Clustering with Entropy jirotubuyaki Jdmbs Jdmbs: An R Package for Monte Carlo Option Pricing Algorithm for Jump Diffusion Models with Correlational Companies jishnus59 Visualization jiwalker-usgs dssecrets Secrets management for data science jiyongkim1122 practice jjallaire Rcpp jjallaire RcppAlgorithms jjallaire RcppLoadModule Simple use of Rcpp loadModule jjallaire RcppStrings jjallaire TBB Intel TBB Package for R/Rcpp jjallaire TensorFlow-v1 jjallaire TestPackage jjallaire TestPackageDepends jjallaire autosnap jjallaire dimple jjallaire jQueryUI jjallaire justgage jjallaire sigma jjallaire sparklingwater Sparkling Water for R jjborrelli nullmatR Generate binary matrices based on a suite of null models jjborrelli rend An R package for Ecological Network Dynamics jjborrelli trophic An R package for simulating food webs jjchern NBERcpsmar1990s Annual Social and Economic Supplement of the Current Population Survey (ASEC, i.e., CPS March Supplement) 1990-1999 as an R data package (From NBER) jjchern RuralUrbanCodes Rural-Urban Continuum Codes from USDA jjchern acs2010s An R data package for ACS 2010-2014 extracted from IPUMS-USA. jjchern ahrf Area Health Resources Files (AHRF) jjchern census.stat jjchern county.pop U.S. Annual County-Level Population Estimates jjchern cpsmar1980s Annual Social and Economic Supplement of the Current Population Survey (ASEC, i.e., CPS March Supplement) 1980-1989 as an R data package jjchern cpsmar1990s Annual Social and Economic Supplement of the Current Population Survey (ASEC, i.e., CPS March Supplement) 1990-1999 as an R data package jjchern csfee Medicaid Birth Procedure Fee Schedules as an R Data Package jjchern ec300 A few functions for Econ 300. jjchern fips FIPS Codes for the States and the District of Columbia as an R data package jjchern flagship Pricing data for state flagship universities from the College Board jjchern gair A few functions that download air data. jjchern gaze An R data package that stores 2010 Census Gazetteer Files jjchern geocorr An R data package for a set of geographic crosswalk files generated from the Missouri Census Data Center's Geographic Correspondence Engine: `MABLE/Geocorr14`. jjchern himrr An R data package for policy parameters specified by ACA's Health Insurance Market Rating Reform. jjchern hospitals 🏥 Hospital related data jjchern laus An R data package: Local Area Unemployment Statistics (LAUS) from U.S. Bureau of Labor Statistics (BLS). jjchern meda Explore metadata records for datasets in R jjchern melig An R data package contains trends in Medicaid income eligibility limits. jjchern mmdata An R data package containing datasets from the beloved econometrics textbook Mastering 'Metrics jjchern pfiles jjchern qcewAPI An R client for BLS's API for Quarterly Census of Employment and Wages (QCEW) jjchern qhp An R data package for Qualified Health Plans data in the Health Insurance Marketplace jjchern sahie An R data package contains U.S. Health Insurance Coerage data from Census's SAHIE program jjchern sahieAPI An R client for Census Bureau's API for Small Area Health Insurance Estimates (SAHIE). jjchern saipe An R data package contains U.S. Poverty data from Census's SAIPE program jjchern saipeAPI An R client for Census Bureau's Small Area Income and Poverty Estimates (SAIPE) API jjchern scorecard An R data package for College Scorecard data jjchern usmapdata US Map Data from Census, with Alaska and Hawaii in Proper Place jjchern zcta An R data package for 2010 Census ZIP Code Tabulation Area information jjchern zillowdata A few datasets from Zillow jjchern zipzcta An R data package for a ZIP Code to ZCTA crosswalk table jjellis GenomicVis R package for genomic visualisation jjesusfilho miscBR Miscelânea de funções úteis para brasileiros jjesusfilho tjdf Webscraping da Jurisprudência do Tribunal de Justiça do Distrito Federal jjesusfilho tjsp jjesusfilho trabalho An R Package to extract and manipulate labor data from the Brazilian government jjinho rnis jjlynch2 AnthroStats Anthropology statistics package which contains commonly used anthropology specific functions. jjlynch2 OsteoShiny Shiny based GUI R package for the osteosort package jjlynch2 OsteoSort Statistical osteological sorting R package for commingled human remains using metric, 2D, and 3D data. jjongbloets nsapi R bindings for the Nederlandse Spoorwegen (Dutch Railways) API jjongbloets slideR A package for creating sliding windows with the purrr package. jjt7549 intervalreg Regression for Interval-Valued Data jjvalletta featselectRF Feature selection using Random Forests jjvanderwal ALA4R This is a project to enable the R community to access data and resources hosted at Atlas of Living Australia (ALA). The goal is to enable outputs (e.g., observations of species) to be queried and output in standard formats. jjvanderwal ConsPlan jjvanderwal SDMTools jjvanderwal climates jjw5234 profxtools an R package of useful functions for profx team jkadcav calculateRBM jkadcav fitLine jkanche Bioc2017 vignette package for Bioc2017 jkanche epivizWorkshop workshop vignette package for Bioc2017 jkapila vcvn R package for Variable Selection, Curve Fitting, Variable Conversion and Normalisation jkaupp NSSEr R package to promote visualization and analysis of the National Survey of Student Engagement (NSSE) jkaupp easel A framework to support visualization of educational data jkaupp jkmisc Miscellaneous R Package jkaupp nord ArcticIce Studios nord, and northern inspired palettes from the Group of Seven. jkeirstead decctools Tools for accessing UK energy statistics jkeirstead jkr An R package of functions and variables that I commonly use jkeirstead scholar Analyse citation data from Google Scholar jkeirstead suslabs An R package for loading and plotting Suslabs NWE data jkennel aquifers jkennel atv jkennel baro Barometric efficiency calculations jkennel rbr Read rbr transducer files (.rsk) jknape nmixgof jknape poptrend An R-package for estimating population trends from count survey data. jknape stageFreq An R package for fitting stage frequency population models. jknightlab AltHapAlignR jknowles EWStools Tools for automating the testing and evaluation of education early warning system models jknowles ModelEWS A repository showing an example of integrating a machine learning based dropout early warning system into a data warehouse workflow. jknowles circus Cluster Identification in R for Categorization and Unsupervised Learning jknowles datasynthR Functions to procedurally generate synthetic data in R for testing and collaboration. jknowles eeptools Educational Evaluation and Policy Tools for R jknowles ggeffects ggplot2 graphical displays of regression effects in R jknowles ham Human Augmented Matching (HAM) jknowles maintainr Functions to make R installations easier to maintain across machines and operating contexts jknowles merTools Convenience functions for working with merMod objects from lme4 jknowles metaframe An R package to extend the functionality of data.frame and data.frame-like objects with metadata and codebook annotations. jkokosar RNASeqT R package for RNA-Seq results normalization and visualization jkrijthe RSSL A Semi-Supervised Learning package for the R programming language jkrijthe Rtsne R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding jkrijthe createdatasets R package for downloading and preprocessing benchmark datasets jkroes FixEncoding Functions to find and replace invalid UTF-8 characters/bytes using the R language. Requires a UTF-8 locale. jkropko coxed An R package for generating duration-based quantities of interest from the Cox proportional hazards model jkruppa RepeatedHighDim Global tests for expression data of high-dimensional sets of molecular features. jkruppa Rjungle R package for Random Jungle jkruppa acgtPyramid R package to visualize the kmer distribution between samples [development version] jkruppa dataTools Private collection of utilitiy and helper functions for my daily workflow [development version] jkruppa geeTools Function collection of GEE jkruppa gemPlot Calculation and visualization of gemplots (3-dimensional extension of boxplot and bagplot) jkruppa kmerPyramid R package to visualize the kmer distribution between samples jkruppa virDisco Modules for a viral detection pipeline. Uses external tools and software. No standalone. jkruppa viralDetectTools Modules for a viral detection pipeline. Uses external tools and software. No standalone. jlacko RCzechia Několik shapefiles pro Českou republiku - okresy, obce, řeky atp. - pro analýzu a vizualizaci v R. jladams sumar A set of tools to retrieve and manipulate data from Suma using R. jlaultman ibrokers Automatically exported from code.google.com/p/ibrokers jlduan sckits jlee66 Airbnb jlee66 airbnb jleelab leeplyr A set of internal Lee lab tools ("plyers") for exploring and wrangling FISSEQ data. jlepird BayesPref A Bayesian algorithm for pairwise preference elicitation jlepird prefeR A Bayesian algorithm for pairwise preference elicitation jlepird raml jlewis91 datascience jlewis91 twitterConvs jlewis91 wikiR jlisic BalancedSampling Balanced and Spatially Balanced Sampling jlisic POETree jlisic cdlTools A set of tools for fetching and using the Cropscape Data Layer in R jlisic isr3 Iterative Sequential Regression (Version 3) jlisic lpm3 A k-d tree implementation of the Local Pivotal Method jlisic meanShiftR A Mean Shift Implementation in R jlisic rasterKernelEstimates Kernel Based Estimates on In-Memory Raster Images jlisic saAlloc R package for simulated annealing assisted strata formation and allocation jlmallo RShodan RShodan jlmdegoede rdatapackage3 jlmelville coil20 Code to Download the COIL 20 Database of Object Images jlmelville funconstrain R Package of Functions for Testing Unconstrained Numerical Optimization jlmelville mize R Package for Unconstrained Numerical Optimization jlmelville mizer R Package for Unconstrained Numerical Optimization jlmelville mnist R Project to Download the MNIST Database of Handwritten Digits jlmelville rcgmin (Non-linear) Conjugate Gradient Optimizer in R with Rasmussen and More-Thuente Line Search jlmelville rconjgrad (Non-linear) Conjugate Gradient Optimizer in R with Rasmussen and More-Thuente Line Search jlmelville smallvis R package for dimensionality reduction of small datasets jlmelville snedata SNE Simulation Dataset Functions jlmelville sneer Stochastic Neighbor Embedding Experiments in R jlmelville tsnesgd t-SNE with stochastic gradient descent jlmelville vizier Visualization of 2D Datasets in R jlopezsi MDSConjoint metric and non metric conjoint analysis tools jlricon MaxClassify An efficient maximum entropy classifier, with some convenience functions jlstiles PFTnew jlstiles SLblip learners to pick up interactions jlstiles Simulations controlling the noise on Simulations jlstiles gentmle jlstiles onestep_package jlstiles parallel jlthomps EflowStats jlthomps SampleSplitting jludmir88 Midterm This is the repository for my midterm, starting at 10 pm. jludmir88 stathw jlugarrancho chessinr Cheesboard graphics and analysis in R (under construction) jlugarrancho garrancho A package with JuanLu Garrancho's personal R Code jlvia1191 dsm This package calculates the estimation of the log likelihood of the saturated model, when the values of the outcome variable are either 0 or 1. jlvia1191 lsm This package calculates the estimation of the log likelihood of the saturated model, when the values of the outcome variable are either 0 or 1. jm3594 crtpower jmab20 farsfuncs Building an R Package task for Johns Hopkins University (coursera) jmacdon BiocAnno2016 jmacdon affycoretools jmacdon methylation Package for working with Illumina methylation arrays jmackie4 cycleRtools R package for cycling data analysis. jmackie4 elpatron Boss cycling analysis with R jmackie4 fitdc R package for decoding Garmin FIT files jmackie4 timetrialr An R package for cycling performance modelling. jmackie4 vo2 R toolkit for exercise science. jmanitz kangar00 development of kangor00 jmarca calvad_choose_cvds_sites CalVAD choose the cvds site candidates jmarca calvad_db_county jmarca calvad_hpms_r_parsing Parse HPMS CSV data with R jmarca calvad_impute_missing CalVAD impute missing trigger routines jmarca calvad_impute_trucks Impute truck estimates at VDS loop detector sites jmarca calvad_merge_pairs jmarca calvad_rscripts Processing and analysis of CalVAD data in R jmarca configr Tiny helper to read JSON configuration files in R jmarca grid_data package for my grid data code jmarca groupsitesr group sites, in R jmarca processbluetooth Process bluetooth data from CT bluetooth detectors jmarca read.ogr helper stuff to read geom tables from a db using readOGR in R jmarca rstats_couch_utils A collection of R functions that I use to put/post/get/delete things from CouchDB jmarca spTimer clone of spTimer: Spatio-Temporal Bayesian Modelling Using R. See jmarlab attract This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression. jmarlab pathVar This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability. jmarshallnz adsmooth Adaptive kernel density estimation with boundary correction jmarshallnz islandR Source attribution using the island genomic model jmarshallnz lpSolve lpSolve package for R jmarshallnz meshblocknz R package capturing meshblock data for New Zealand jmarshallnz pubmlst R package for PubMLST data jmarshallnz statsNZ R package for accessing the StatisticsNZ API jmattingly dbst R package for UMUC Database Systems Technology program, tuned for the DBST 667 Data Mining course jmay29 barcode jmazar obmodeling jmbadia GcxGctools Tools for GCxGc data jmbanda LearningEffectiveCTP Learning Effective Clinical Treatment Pathways from Data jmbh cstab Selection of Number of Clusters via Resampled Normalized Cluster Stability jmbh mMRF (Old version of the mgm-package) jmbh mgm Estimation of Time-Varying k-order Mixed Graphical Models jmbh mt.analysis Functions to pre-process and analyse data from mouse-tracking experiments jmbh mta Processing hand movement data jmbh mta2 new version of mta package jmbigi perfEstimation perfEstimation jmcalabrese corrMove R package for analyzing correlated movements among individuals jmcastagnetto nistrb An R package to access the NIST Randomness Beacon jmcimula afdbr Afdb project extractor jmcimula amprod Amazon product data jmcimula cblmr The choice of the best linear model jmcimula cmsr Commission management system with R — jmcimula ethnocloud Focusing on providing high quality music streaming content jmcimula flytr Quickly and Easily Track a Flight jmcimula jpname Display a randomly selected a given name and search the meaning on namespedia jmcimula lmR Building a Prediction Model from Top 10 Features jmcimula lmr Building a Prediction Model from Top 10 Features jmcimula okapi The package for Okapi News Tracker jmcimula pkginfo Tools to get interactively information of R packages jmcphers golwidget Game of Life htmlwidget for R jmcphers lobstrview HTML widget for viewing R lobstr output jmcphers rregvis R Regular Expression Visualizer jmcurran Banu jmcurran Bayesxfst jmcurran Bolstad No description or website provided. jmcurran IBSAR R package for creating a conference programme jmcurran ISBAR R package for creating a conference programme jmcurran IntroBayesR jmcurran NZSA R package for abstract booklet and programme for NZSA/IASC-AR 2017 conference jmcurran dbSim jmcurran jMulticool jmcurran multicool R package for generating multisets in coolex order, generating all integer partions/compositions (or those of a certain length), and some number theory functions jmcurran rbayesfst jmcurran relSim relSim jmcurran s20xHelpR jmcurran tfer R package for assessing transfer probabilities in forensic glass interpretation jmcurran tferDash A Shiny Dashboard interface to the tfer package jmedzihorsky RKindle A toy R package for creating Kindle collection JSON files jmedzihorsky SetMethods Development version of R package SetMethods jmedzihorsky pistar An R package for the Rudas-Clogg-Lindsay mixture index of fit jmedzihorsky qca.sim Source code for qca.sim jmerc13 LakeIsodrology jmeskas flowCL Semantic labelling of flow cytometric cell populations. jmeskas flowCut Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis. jmgfake ThePakken ThePakken jmgirard ssm R package for the Structural Summary Method jmgnve HMOD R package with a simple snow (temperature index) and hydrological model (GR4J). jmgnve NVEDATA R package for processing data at NVE, currently meteorological (SeNorge) and runoff data. jmgnve fitdistrib Set of functions to fit probability distributions (package-making exercise) jmhewitt telefit jmiahjones lunch.time Use data from Google Sheets to analyze survey data related to lunch consumption. Built to analyze work-life-balance. jmigueldelgado hdi Collection of implementations of Hydrological Drought Indexes jmigueldelgado hydraulics equations of open channel flow, flow routing, IDFs etc jmigueldelgado micrometeo psychrometry and some micrometeorological expressions jmigueldelgado myrpack jmigueldelgado pluviopt a rvest based package to harvest near real-time pluviometry data from SNIRH/Portugal jmigueldelgado wasa.ops jmiguelj FRAMEtags Simplifies use of openCyto to gate and quantify flow cytometry or microscopy data captured from FRAME-tagged cells. jmills-ucar nwmtools Tools for specific workflows pertaining to National Water Model output jminnier emrselect Automated EMR feature selection jminnier shinysequin R package for visualization of sequencing data within shiny. jmlondon Rpostgis jmlondon aleutpvdata jmlondon crawlr utilities and visualization functions in support of the crawl R package jmlondon hsmm_seasons manuscript on the use of multivariate hidden semi-Markov models for detecting seasonal behavior states from bio-logging data jmlondon kotzeb0912 telemetry data from 7 adult bearded seals captured in Kotzebue, Alaska jmlondon nPacMaps R package for North Pacific maps jmlondon uswebr R packages and RMarkdown template based on the U.S. Web Design Standards jmlondon wcUtils Utilities for working with Wildlife Computers Data Portal and WC-DAP data files jmmark FARScoursera R package for coursera assignment jmmark QuakeCoursera R programming capstone project, Coursera jmmorales JSMM an R package for joint species movement modelling jmmorales p2p jmonlong PopSV Population-based detection of structural variation from High-Throughput Sequencing. jmonlong sQTLseekeR R package to detect splicing QTLs (sQTLs) jmoss13148 cryptoR jmoss13148 equitiesr jmoss13148 sandpr jmoss13148 wgd jmoss13148 williams Williams College Geographic Distribution Data jmousseau Stain Generate slurm job "containers" for your R code. jmousseau slurm Generate slurm job "containers" for your R code. jmousseau solargis Request SolarGIS for the United States and Canada. jmp75 Rcppfor Sample R package - learn and demo how to access "modern" fortran from R, via Rcpp jmp75 RtoTIME A package to access TIME modelling component from R jmp75 carsales Fun but useful personal use of R for me to buy a car jmp75 mhplot An R package to visualize the outputs from optimization algorithms jmp75 msvs An R package to help R packages work with the Microsoft compilation toolchain jmp75 rClr R package for accessing .NET jmp75 spotifyr Spotify Web API from R jmp75 verifyImpl Tools to help verify the correct implementation of algorithms jmpaon ScatterR-gui GUI for R implementation of the Scatter algorithm jmpsteen medflex Flexible mediation analysis using natural effect models in R jmpsteen medflex0.0 Flexible mediation analysis using natural effect models in R jmsigner MODISSnow jmsigner amt jmsigner fpga jmsigner jmsigner jmsigner rhr jmsigner rhr-manual jmsigner rhrBase jmsigner steppingstone jmsocuellamos EDAumh jmsuk0587 Atest test jmsuk0587 ThisisaTest test jmsuk0587 rFSA R package for running a Feasible Solution algorithm to find a set of mth order interaction models that are statistically optimal (no one swap can improve the criterion function) jmsuk0587 testpackage a test jmurray0568 pardot4 jmurthy12 foofactors jmw86069 jamba Jam Base Methods for R jmw86069 jamma Jam MA-plots, volcano plots, other relevant genomics visualizations jmwerner ArtisanalMachineLearning Hand crafted & certified organic machine learning jmzeng1314 IRseq jmzeng1314 geneSet jmzeng1314 humanid my first R package just for testing jnguyen92 jn.general R Package for Analysis and Wrangling jnguyen92 scriptR R Package for Scripting jnikelski beagle.statistics An assortment of R functions that are used by the Beagle processing pipeline. jnikelski rmincIO R package for the easy reading and writing of minc volumes jnikelski rmincIO.extras Extra stuff not really needed in the main package, e.g., documentation generation and unit tests. jnkoberstein DEScan jnombela dataprods_project No description or website provided. joachim-gassen ExPanDaR R Package for Interactive Panel Data Exploration joanaseg mytestpkg my very first repository joannaqiu Linreg joannarong CDCCR joannarong Test This is a test R package joaobtj HF Head loss in pipes joaocunha1991 AccidentR This directory is an R Package built in the context of the Mastering Software Development in R specialisation from Johns Hopkins University - Coursera. jobonaf arpautils R utility functions for Arpa ER air quality data jobonaf dartle air quality model benchmarking jobonaf pesco Data fusion for air quality data jobonaf reddy utility to manage EddyPro output jobonaf sleepR R package to manage Sleepbot records jodie0399 NUTS The No U-Turn Sample joearossetti SimNashPrice joebrew cism CISM joebrew joebrew joe brew's tools joebrew malaria.github.io joebrew malariaprediction Malaria prediction market joebrew maragra Analysis of Maragra/Ilovo worker absenteeism and malaria data joebrew mosquitonet joebrew tgh_pres joeburns06 hocuspocus hocuspocus joeddav CNTK-R R interface to Microsoft Cognitive Toolkit joeguinness aldo joeguinness npspec joelcarlson RImagePalette Create a representative palette from an image. joelcarlson radiomics A toolkit for the calculation of radiomics features in R. joelcarlson rdatadict Simple and attractive data dictionary for keeping your work organized and reproducible joelgombin Insee2MonetDB Importe et stocke des fichiers détails de l'INSEE joelgombin LireMinInterieur Outils pour nettoyer les fichiers électoraux du Ministère de l'Intérieur joelgombin adresses2shape Reconstituer facilement des polygones à partir d'adresses joelgombin banR R client for the BAN API joelgombin cartoPOO joelgombin detectR détecteur de lecteur inattendu (pour OpenEdition) joelgombin ggplot.acm ggplot2 plots made easy for Multiple correspondence analysis (MCA) joelgombin qualvar joelgombin spReapportion Reapportion Data From one Geography to Another in R joelgombin toTopoJSON Convert SpatialPolygonsDataFrame objects to topojson files. joelhsmth startmrca Estimating time to the common ancestor for a beneficial allele joelkuiper personograph Personograph visualization of treatment effects joergrieger bvar R package for Bayesian Vector Autoregression joergsteinkamp FEglobaleOekologie joergsteinkamp FlightControl joernih ADASModule1 Blanchard_model joernih ProjectABC joernih QlikQonnections2016Public joernih abc No description or website provided. joernih def No description or website provided. joerodd JRformats joerodd JRmodellinghelpers joerodd roble joethorley ranmr Loch Rannoch Ferox Trout Mark-Recapture Analysis joetidwell OCLO joetidwell sparkler Latex sparklines from ggplot2 objects joevanderlans regr Replicate STATA Regressions in R joewandy gradmatch Just a test package joewandy shinyKGode An interactive web application for gradient matching methods. joewandy shinygradmatch A Shiny user interface for RKHS Gradient Matching (https://bitbucket.org/mu_niu/rkhs_gradmatch) joey711 animate.phyloseq Animation addon tool for phyloseq package joey711 biom Development version of the biom package for R joey711 biomformat Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5) https://bioconductor.org/packages/release/bioc/html/biomformat.html joey711 biomformat0 Support for the biom file format in R/Bioconductor, versions 1.x (JSON) as well as 2.x (HDF5) joey711 npSeq Vanilla npSeq downloaded from http://www3.nd.edu/~jli9/research.html joey711 phyloseq phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page: joey711 testpkg A dummy R package for testing aspects of R development jofie DistCov Development of an R-package for providing fast and modern distance covariance functions. jofre44 packentrega Master jogrue RfacebookHelperFunctions Some functions I use to help me working with Rfacebook jogrue jogRu My collection of R functions jogrue rXMLTV R package for reading XMLTV files (see xmltv.org) in R. joh4n JGTools R tools for Johan By Johan johan-gudmundsson JGTools R tools for Johan By Johan johanez probaV utils for proba-V data analysis. johanez rfTools R package with tools for parallel randomForest johannes-titz leabRa johannestang forecastexp An R package for conducting macroeconomic forecasting experiments johannestang macrods A collection of macroeconomic datasets johnDorian BOMdataRipper johnDorian Pres johnDorian TSAgg An R package to agrregate temporal data johnDorian ggsnippets johnDorian jasonlessels johnWilshire collatz Computes collatz stopping times. johnWilshire contest An R package implementing an individual based model exploring intra-species contests. johnWilshire contest_analysis johnWilshire dota2api A R wrapper for the dota 2 web api. johnbaums hues Generate palettes of distinct colours through k means clustering of LAB colour space. johnbaums jagstools R functions to filter and manipulate rjags and mcmc.list object summaries. johnbaums mptools RAMAS Metapop tools johnbaums rmaxent Tools for working with Maxent in R johnbaums testrgdaltravis What the Package Does (one line, title case) johnbaums things Miscellaneous R functions - mainly spatial and SDM johnbaums trees Simulate and plot trees in R johnchaston MAGNAMWAR magnamwar johnchower cctimes Calculation of Content Completion times for team Catalyze key metrics. johnchower flashreport Package to generate the weekly flash report for Gloo. johnchower gloobtyd Application of bg/bb churn prediction model at Gloo. johnchower gloograph Graph analysis for Gloo johnchower glootility R package containing useful functions for doing analytics at Gloo. johnchower notificationGraphs R package to create the team Make notification click-through graphs. johnchower oneD7 Gloo 1D7 analysis johnchower standardmetrics R package for calculating internal industry-standard engagement metrics at Gloo. johncmerfeld GooseEgg Predictive modeling for football defenses johndharrison HARtools Read/Parse, write and visualise HTTP Archive ('HAR') files in R johndharrison JSON2XML Methods to convert a XML string into a JSON string, and to covert a JSON string into an XML string. johndharrison RBMproxy R bindings for Browser Mob proxy. johndharrison RSauceLabs Wrapper around the Sauce Labs REST API for R. johndharrison Rsoup R interface for java jsoup library johndharrison binman A Binary Download Manager johndharrison bmproxy R client for the BrowserMob Proxy REST API johndharrison dockerAPI An R client for Docker Remote API johndharrison rDVR Record your moments of R bliss/misery for posterity!! johndharrison seleniumPipes An R client implementing w3c webdriver johndharrison shinyGWorks shinyGWorks johndharrison shinyStorage johndharrison simplewidget johndharrison wdman Webdriver/Selenium Binary Manager johndharrison webpagetestr WebPageTest API Client for R johndharrison wikipediatrend A convenience R package for getting Wikipedia article access statistics and more. johnfrye GitHub johnfrye WorksheetFunctions johnfrye frye johnfrye smutilities johngil gilheany.thesis johngil mscidata johngilheany Thesis Thesis Research johngilheany project johninpdx JMLUtils Utility functions for R administration, statistical calculations, and general data management johninpdx RSTools Data management tools for use with RSiena johnjfox jjf johnjoo1 UltimateAnswerR johnjosephhorton GradeGrubber An R package to create student-specific statistical feedback on their course performance. johnjosephhorton JJHmisc R package of functions I've written and found useful. johnjosephhorton ggplot2-to-d3.js-translation johnjosephhorton techbios R package with tools for analyzing biographies of engineers working in Silicon Valley johnlaing bs.opt johnlaing mutt R interface to mutt CLI johnlaing pam johnlaing reacshin react + shiny johnlaing rfred R interface to FRED johnmchambers XR Structure for Interfaces (from "Extending R") johnmchambers XRJulia XR-style Interface to Julia (from "Extending R") johnmchambers XRPython XR-style Interface to Python (from "Extending R") johnmchambers XRcppExamples Examples of subroutine interfaces for "Extending R" johnmchambers XRexamples johnmchambers XRtools Possibly useful tools discussed in the book "Extending R" johnmchambers juliaExamples Examples for the XRJulia Interface johnmchambers roxygen2 roxygen2 with fix for reference classes with inheritance johnmchambers shakespeare Python interface tools as examples for "Extending R" johnmwaugh FarsPackage johnmyleswhite BehavioralEconomics R package for behavioral economics johnmyleswhite DistributionsAlgebra.jl johnmyleswhite FourierDescriptors Generate images using Fourier descriptors. johnmyleswhite ProjectTemplate A template utility for R projects that provides a skeletal project. johnmyleswhite Roadmap.jl johnmyleswhite SortableHTMLTables A package for writing data frames as sortable HTML tables. johnmyleswhite TextRegression An R package that automates text regression analysis. johnmyleswhite abbReviations Functions for dealing with common abbreviations. johnmyleswhite colorschemes johnmyleswhite cumplyr An extension of plyr that uses inequality constraints. johnmyleswhite curve3D An analogue of curve() for functions of two variables. johnmyleswhite ggplots A wrapper library that provides functions for common plots using ggplot2. johnmyleswhite log4r A log4j derivative for R. johnpateha MyShinyAppBMI johnpeach timeseries EN.625.495 - Time Series Analysis Project johnrbryant nzreg johnsonjc6 JamesJohnsonSTT3851 johnsonjc6 simplemathr2 this is for demo johnsunx1 abpm Ambulatory blood pressure measurement johntruckenbrodt tsar multitemporal analysis of raster data johnwilsonICON TxVis No description or website provided. johnwilsonICON txvis johnypark divSPtise R package for diverse species time series analysis with regression options to deal with multiple functional traits - divsptise johnypark divsptise R package for diverse species time series analysis with regression options to deal with multiple functional traits - divsptise johnzonwyk DensParcorr johow kinlab Analyzing kinship, survival and reproduction in historical family data. jojo- mipfp Multidimensional Iterative Proportional Fitting and Alternative Models jokagyeman foofactors What the Package Does (one line, title case) jokbull VolatilityEstimation jokbull WindAPIWrapper R WindAPI Wrapper jokbull bizday business day library for Chinese stock market jokergoo CePa Centrality-based pathway enrichment jokergoo ComplexHeatmap make complex heatmaps as well as self define annotation graphics jokergoo EnrichedHeatmap make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions. jokergoo GTF Simple class to process GTF data jokergoo GetoptLong parse command-line arguments and simple variable interpolation in R jokergoo GlobalOptions Generate function to get or set global options jokergoo HilbertCurve Visualize genomic data by Hilbert curve jokergoo circlize Circular visualization in R jokergoo cola Unsupervised subgroup classification based on consensus clustering jokergoo cotools NGS tools for Conputational Oncology group in DKFZ jokergoo epic Integrative analysis for epigenomic sequencing data jokergoo epik Integrative analysis for epigenomic sequencing data jokergoo epik.cmd Command line interface to epik package jokergoo gtrellis Genomic plot in trellis layout jokergoo pheatmap2 pretty and parallel heatmap jokergoo rGREAT Client for GREAT Analysis jolars TSAsolutions Solutions to the problems in Time Series Analysis with Applications in R jolars euclidr Geometric Utilities for R jolars eulerr Area-Proportional Euler and Venn Diagrams with Circles or Ellipses jolars latticework Extensions to lattice jolars motley A Motley of R Functions jolars qualpalr Automatic Generation of Qualitative Color Palettes jolars tactile New and Extended Plots, Methods, and Panel Functions for Lattice jolars trelliswork Extensions to lattice jolars valgrindtestr Tests valgrindr integration via travis CI. joliencremers bpnreg Bayesian Projected Normal Regression Models for Circular Data jomuller Exemple-PAM jomuller ITCARES R Package for Case-Crossover on Electronic Medical Records (EMR) for patient safety jomuller chambre_erreur jomuller dfcheck Check a data table jomuller dfexplore R package to explore graphically a data.frame jomuller ggepicurve Epidemic curves in R with ggplot for hospital outbreaks jomuller rigaps jomuller vartors Create R script skeleton from variables definition jon-mellon mellonMisc A miscellaneous set of Jon Mellon's R functions jon-mellon procureClassify Machine learning classification of procurement items jon-mellon weightBES Convenience functions for creating bespoke BES Internet panel weights jonasbhend NRMgraphics R package for graphical display of climate model projections jonasbhend VOLCprediction R-package jonasbhend biascorrection Functions to de-bias forecasts jonasbhend easyVerification jonasbhend geoutils R package with functions for climate model data analysis jonasbhend myhelpers Set of R tools for often performed tasks jonasbhend pressurehelper R package containing functions needed to format air pressure readings jonataseduardo unphased jonathan-g analyzeBehaviorspace R Shiny package to analyze output from NetLogo behaviorspace experiments jonathancornelissen DM Help functions for the DataMind.org jonathancornelissen Rdocumentation_package Integrate R with http://www.Rdocumentation.org jonathancornelissen datamind Interface to create interactive courses for www.datamind.org jonathancornelissen datamindSCT Help functions for the Submission Correctness Tests jonathancornelissen highfrequency The highfrequency package contains an extensive toolkit for the use of highfrequency financial data in R. It contains functionality to manage, clean and match highfrequency trades and quotes data. Furthermore, it enables users to: calculate easily various liquidity measures, estimate and forecast volatility, and investigate microstructure noise and intraday periodicity. jonathancornelissen highfrequencyGSOC Repo for the Google Summer of Code project of student Giang Nguyen jonathande4 igdb Provides functions for accessing the internet game database api. jonathanelee1993 cats jonathanelee1993 clinicalresponsepackage Contains the R package that I developed while working with the University of Florida Food Science and Human Nutrition Department jonathantemplin EPSY905R R package containing functions and dependencies for EPSY 905 (Contemporary Multivariate Statistics) jonathanth mixOmicsCaret Implementation and utility functions for using the mixOmics package in the caret framework jonathon-love BFX jonathon-love JASPSupport jonathon-love car jonathon-love car3 jonathon-love silkyR Allows you to make R stuff really silky jonathoncmagana project jonathonthill MMAPPR2 jonbramble caryscan package for processing cary eclipse spectroscopy data jonclayden RNifti Fast R and C++ access to NIfTI images jonclayden RNiftyReg An R interface to the NiftyReg medical image registration library jonclayden divest Get images out of DICOM format quickly jonclayden irk Image resampling with kernels jonclayden mmand Mathematical Morphology in Any Number of Dimensions jonclayden multicore Git clone of the "multicore" SVN repo on rforge.net jonclayden ore An R interface to the Oniguruma regular expression library jonclayden reportr A general message and error reporting system for R jonclayden shades Simple colour manipulation in R jonclayden soma An R implementation of the Self-Organising Migrating Algorithm jonesor Rage jonesor Rcompadre jonesor rcolony The RColony package provides simple tools for the implementation of the Colony pedigree analysis software. jongbinjung datree Decision analysis tree library for R jongbinjung ggbuildr Rpkg to save intermediate builds of ggplots jonkatz2 monitoR jonkatz2 rmongodb jonkatz2 shinyAddOns A collection of helper functions for RStudio's 'shiny' package jonkeane mocapGrip An R package that encapsulates a motion capture grip and gesture analysis project jonkeane mocapProcessor A collection of tools to process mocap data in R jonmcalder exercism R package for the exercism.io API jonmcalder refactor :bookmark: Better factor handling for R jonocarroll RDataGovAU Access data.gov.au open data sets with R jonocarroll btts We need to go... Back To The Source jonocarroll butteRfly Build a social network dashboard in R (Twitter/Facebook/GitHub/etc...) jonocarroll chaint "chain with a tee" -- add tee functions to magrittr/dplyr chains jonocarroll ggeasy ggplot2 shortcuts (transformations made easy) jonocarroll ggghost 👻 Capture the spirit of your ggplot call jonocarroll ggshape Arrange 'ggplot' facets in arbitrary shapes jonocarroll githubtools Tools to complement building and using R packages installed from GitHub jonocarroll githuburlcheckr Scan a GitHub repository and check the validity (can connect) of all visible URLs jonocarroll mathpix Query the mathpix API to convert math images to LaTeX jonocarroll pp3starchart jonocarroll runkeepR Extract, plot, and analyse Runkeeper(TM) data. jonocarroll starryeyes "Oh my God! — it's full of stars!" jonotuke HMMCPP Rcpp implementation of HMM package jonotuke adParser jonotuke catenary R package for using catenaries jonotuke examMarking Code to do exam marking jonotuke graphResiduals jonotuke graphr Code for random network estimation jonpage openCPUTest Test of OpenCPU jonydog survBootOutliers Outlier detection methods for survival datasets based on the analysis of the bootstrapped concordance joongsup uncmbb UNC men's basketball match result joph MERRAbin joranE aqtheme joranE fiscrape FIS Scraping Tools joranE fispdfparsr Utilities for parsing FIS PDF race results into more useful formats joranE skierELO ELO functions joranE statskier Watch joranE statskier2 Complete rewrite of statskier jordantjohns mypkg My R pkg jordimartorell mCSEA R package for DMRs analysis jorgeb49 rpackage_assignment jorgerodriguezveiga WildfireResources Optimization model to manage resources in wildfires. jorgetendeiro GGUM GGUM jortdevreeze apaStyle Generate APA Tables for MS Word. jos4uke contigLink Assembly contigs link builder R package jos4uke qc4rnaseq Estimer a posteriori la qualité des banques de RNASeq, à partir des données de comptage joscani getCredentials Get s3 credentials from aws ec2 instance joseah srametadata Package for getting and cleaning metadata from Sequence Read Archive (SRA) josealburgos CourseraPackage My First Package josealburgos fars_function Graphs accidents by State in the USA josealburgos topten Formula to calculate topten joseflaviojr transmod Method to specify list of most relevant genes among differential expression profiles based on gene network knowledge. josefslerka geosugar Wrapper for 4sq. josefslerka sugar Social Media Data Mining. josegallegos07 aceR An R package for processing ACE data josegallegos07 steamR An R wrapper for Steam's Web API josephjosephadams runchart An R package for creating run charts. josephmure GibbsPosterior josh-whitney JWmisc Watch josh-whitney Jmisc A small package of utility functions I've found handy. josh-whitney stacker A package to stack arbitrary models together. josherrickson epb R package implementing Enhanced Peters-Belson josherrickson pbph R package implementing Peters-Belson with Prognostic Heterogeneity joshkatz needs An R function for safe package loading / installation. joshloyal STAT542 Code for STAT 542: Statistical Learning (Fall 2017 @ UIUC) joshloyal loyalr Joshua Loyal's Personal R Package joshmarsh TSPatternQuery An R package for querying time series for user-defined patterns using the hybrid ruleset pattern matching method. joshmarsh TSTestDataUtil An separate repository I used to help with testing TSPatternQuery joshoberman backtest R Package to Backtest Time Series Models joshua-heipel textmining Some R functions for information retrieval purposes. joshua-heipel tmbQuery Search functions for tambora.org joshua-james-f DiscDots R package for discrete dot plots built on ggplot2 joshua-james-f MCMCtab R package to generate HTML/LaTeX publication style regression tables for MCMC output joshuaadampoirier ggdocumentation An R package allowing users to add documentation to 'ggplot2' plots joshualeond rCentrik InCentrik R Package joshuamwang CAlbicansR R package to analyze biological datasets in Candida albicans. joshuaschwab ltmle Longitudinal Targeted Maximum Likelihood Estimation package joshuaulrich Defaults R package to set, get, and import global function defaults joshuaulrich IBrokers R API to Interactive Brokers Trader Workstation joshuaulrich LSPM R implementation of Ralph Vince's Leverage Space Portfolio Model joshuaulrich TTR Technical analysis and other functions to construct technical trading rules with R joshuaulrich greeks Basic tools for option contract manipulation and visualization in R joshuaulrich opentick OPENTICK SERVICE NO LONGER EXISTS! Native R interface to opentick real time and historical market data joshuaulrich pack Convert R objects to/from various binary formats joshuaulrich quantmod Quantitative Financial Modelling Framework joshuaulrich stunning-potato joshuaulrich xtime Universal time class handling using ISO8601 formating conventions joshuaulrich xts Extensible time series class that provides uniform handling of many R time series classes by extending zoo. joshuaulrich xtsExtra Supplementary xts functionality, and development platform for GSoC projects joshuawlambert rFSA An R package for finding higher order interactions, and best subsets in statistical models. joshuawlambert rFSA2 Feasible Solution Algorithm in R joshuawlambert rFSA_CRAN rFSA CRAN build joshuawlambert rGames Simple games in R joshyazman yaztheme My personal ggplot theme josiahpjking jkr various r functions which will slowly grow.. devtools::install_github("josiahpjking/jkr") josie-athens pubh josie-hughes EmpiricTherapyIndices Calculate empiric therapy indices for device-associated infections. The method is described in Hughes et al. 2016. How to measure the impacts of antibiotic resistance and antibiotic development on empiric therapy: new composite indices. http://bmjopen.bmj.com/content/6/12/e012040.abstract. Find installation and use instructions in Example.R. jotacomcomunicacao jotadashDataAccess jotegui GeospatialQualityR R wrapper for the Geospatial Data Quality REST API jotegui rgeospatialquality R wrapper for the Geospatial Data Quality REST API jotsetung CompoundDb.Hsapiens.HMDB.4.0 HMDB (http://www.hmdb.ca) compound database for PeakABro (https://github.com/stanstrup/PeakABro) jotsetung EnhancedTxDbs Provides functions for creating Bioconductor TranscriptDb objects from Ensembl. jotsetung EnsDb.Hsapiens.v75 EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75 jotsetung FamAgg This is the development version of FamAgg. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/FamAgg.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=FamAgg. jotsetung GenomePlotR jotsetung MirhostDb.Hsapiens.v75.v20 Definition of miRNA host genes based on Ensembl version 75 and miRBase version 20. jotsetung SeqUtils R package provides some utility functions for the processing of sequencing data which complement the functionality of other packages handling such data. jotsetung atc This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these. jotsetung ensembldb This is the ensembldb development repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ensembldb.html Contributions: https://github.com/jotsetung/ensembldb. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ensembldb or https://github.com/jotsetung/ensembldb/issues. jotsetung ensembldb-old NOTE: that's the version prior to the Bioconductor github mirror. The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures p… jotsetung generalgcrma An R package to perform GCRMA background adjustment for Affymetrix Tiling, Exon and Gene ST microarrays. jotsetung mirhostgenes mirhostgenes: putting miRNAs into genomic context. Definitions of potential primary transcription units for miRNAs and microarray probe sets that would allow to detect/measure these. jotsetung mirtarbase mirtarbase: a database of validated miRNA target gene interactions, as provided by the miRTarBase (http://mirtarbase.mbc.nctu.edu.tw/) jotsetung mirtarbase-db R package providing the validate miRNA-target gene interactions (MTIs) from the miRTarBase database. jotsetung unsoRted Unsorted R functions and utilities. jotsetung xcmsExtensions Collection of methods and functions extending the functionality of the xcms Bioconductor package. jowalski rtmapidoc Scraper of the Remember the Milk API website jowalski rtmr R client for the Remember the Milk API jowers nbadata R Package to access nba data joxborrow stsfunctions joyent Rbunyan R logging library, bunyan style joyent mantaRSDK Joyent Manta R Software Development Kit joyent mi-chefserver joyent mi-percona-cluster joyofdata RTwitterAPI Making requests to Twitter's REST API v1.1 joyofdata rmongodbHelper Comfortably convert JSON to list to BSON jp2011 statstoolkit jpahle CoRC The Copasi R connector, a high-level R API for Copasi jpalardy enablr @jpalardy's utility functions jpalowitch cbce package code for Correlation Bi-Community Extraction method jpedroan GMEselection Variable Selection with Generalized Maximum Entropy jpedroan RProgramTest jpellman spmR An implementation of Statistical Parametric Mapping written in R, specifically focusing on fMRI. jpellman textgridR An R package that reads in Praat TextGrid annotations so that they can be manipulated as R objects. jperera-bel genomicReport jperezrogers rabbit built on carrots, err, caret jpetrovich02 BFOFR Bayesian Function on Function Regression for Multilevel Data jpetrovich02 CCMHr Assorted functions used for common data cleaning for CCMH data jpfonseca84 JPToolBox Personal Tools jpfonseca84 JPtools Personal Tools jpfonseca84 jptools My tools for daily works jpfrench81 ExceedanceTools R package for constructing confidence regions for exceedance regions jpfrench81 SpatialTools An R package for spatio-temporal data analysis jpfrench81 autoimage Enhanced Image Plots in R jpfrench81 gear Geostatistical Analysis in R jpfrench81 smacpod jpfrench81 smerc Statistical MEthods for Regional Counts jpgard auctestr auctestr r package jpgattuso seacarb-git Seawater carbonate chemistry with R jpiironen dimreduce jpison GAparsimony A GA-based optimization R package for searching accurate parsimonious models jpison KDSeries Knowledge Discovery in Time Series jpkeller eshrink Shrinkage estimators for estimating regression parameters jpkeller predkmeans R Package for implementing the predictive k-means method jplatig condor COmplex Network Description Of Regulators, an R package for bipartite network analysis jpmaldonado Silverpop-Get-FTP jpmaldonado Silverpop-TableExtractor jpmarindiaz RNeo4jUtils jpmarindiaz bubbleCloud jpmarindiaz captureWidget jpmarindiaz d3plus R Htmlwidget for d3plus (http://d3plus.org) jpmarindiaz datafringe jpmarindiaz datapackager jpmarindiaz deduplicate jpmarindiaz dimpler jpmarindiaz dmaps jpmarindiaz dsAppModules jpmarindiaz dsh jpmarindiaz framer No description or website provided. jpmarindiaz fringer jpmarindiaz geodata jpmarindiaz homodatum jpmarindiaz imteractive jpmarindiaz isotope jpmarindiaz leafletCol jpmarindiaz mop jpmarindiaz mopper jpmarindiaz paletero jpmarindiaz pseudoviz jpmarindiaz samplepkg jpmarindiaz saveWS Rstudio Addin to save workspace variables in different formats jpmarindiaz scatterimg jpmarindiaz shi18ny jpmarindiaz shinySteps jpmarindiaz shinysteps jpmarindiaz sigmaGraph jpmarindiaz tableize jpmarindiaz utter jpmeagher sdsBAT R Package accompanying Statistical Data Science Conference Paper jpmml r2pmml R package for converting R models to PMML jporobicg ReactiveAtlantis jprenaud-02 coopR Fonctions pour la coop chene jprenaud-02 ecofloRe jprenaud-02 onfR package onfR jpritikin emx jpritikin ifaTools Tools for Item Factor Analysis jpritikin snow jpromeror EventPointer R package for the identification and statistical analysis of alternative splicing events using junction arrays or RNASeq data jpromeror EventPointer.RNASeq EventPointer algorithm for alternative splicing analysis from BAM files jpshanno Ecohydro Functions for ecohydrology studies including Granier-style thermal disspiation sap flux calculation. jpshanno ecoFlux Functions for ecohydrology studies including Granier-style thermal disspiation sap flux calculation. jpshanno ecoflux Functions ecohydrology and helpers. Includes tools for working with PP Systems EGM-4 and Solinst .xle levellogger data. jpvert apg Accelerated proximal gradient in R jpvert kmr Kernel multitask regression jpvert kmr4toxicogenetics Code to reproduce the experiments in the paper "Kernel multitask regression for toxicogenetics" jpvert suquan Supervised quantile normalization in R jr-packages efficientTutorial Slides and tutorials for useR!2017 Efficient R tutorial jr-packages jrAutomate jr-packages jrBig jr-packages jrData jr-packages jrGgplot2 jr-packages jrIntroduction jr-packages jrModelling jr-packages jrNotes Helpers functions for building notes jr-packages jrPackage jr-packages jrPredictive jr-packages jrPresentation Presentation style for Jumping Rivers jr-packages jrShiny jr-packages jrSql jraffa MIMICbook R code for the upcoming MIMIC book and course (a work in progress) jraffa MIMICutil R utilities for the the MIMIC III Database jraffa pedRSP Pedigree Relatedness Summary Parameters R package jranke PEARL.installeR R package for installing FOCUS PEARL on Linux/Unix systems for use with wine jranke PELMO.installeR R package for installing FOCUS PELMO on Linux/Unix systems for use with wine jranke chemCal Calibration Functions for Analytical Chemistry jranke chents Chemical entities as R objects jranke gmkin GUI for fitting kinetic models to chemical degradation data with mkin jranke mkin R package for fitting kinetic models with one or more state variables to chemical degradation data jranke pfm R package with utilities for pesticide fate modelling jranke rlo R package for writing to libreoffice documents jrboyd seqsetvis Allows general set comparisons with a focus on sets of genomic locations (ChIP-seq peaks primarily). The includes standard visualizations such as venn and euler diagrams but more powerfully of genomic signal pulled from bigwig files. jrccrj rna data and analysis jrccrj statagain another jrccrj statp another stat pack jrccrj statpack tester jrcunning IPAM2R Imports data from imagining PAM fluorometer into R jrcunning coRal R package for dynamic bioenergetic modeling of coral-Symbiodinium symbioses jrcunning labnotebookTools jrdnmdhl StoreR jrdnmdhl flexsurvcure Parametric cure models for flexsurvreg jrdnmdhl iceR Cost-effectiveness analysis in R jrdnmdhl networkD3 Minor tweaks to handle resizing jrdnmdhl reconIPD R package for reconstructing time-to-event data from published information. jread-usgs HUCAgg For testing only. jread-usgs dinosvg dynamic svg building in R jread-usgs hydroMaps jreiche bayts jreps featureEngineering jreps patientCluster An r package for clustering patient cohorts in the OMOP CDM format by medical history or creating topic concept sets jrevenaugh TSAUMN jrfarrer jrfTools R package that contains personal functions jrfaulkner bnps R package for Bayesian nonparametric adaptive smoothing with Stan jrfaulkner spmrf R package for Bayesian nonparametric adaptive smoothing with Stan jrgant quickDAG Build, save, and embed directed acyclic graphs (DAGs) jrh05 opsumToolbox Provides set of tools for importing and data-wrangling USCG msgs such as operational summaries, deployment summaries, and more. jrhaberstroh rstact Transaction analysis base functions from work at Roofstock jrhammond EventNetworks Gather, munge, and convert Phoenix event data into daily event-networks. jrhammond phoenixNet Gather, munge, and convert Phoenix event data into daily event-networks. jrhub regnet Network-Based Regularization for Generalized Linear Models jrising hierlm Hierarchical Linear Model system for R jrjxh SSTClustering “半监督”文本聚类技术应用 jrjxh tmcmbc jrklasen MixedModels Mixed Models with covariance relationship matrices in R jrklasen relMM Mixed Models with relationship matrices in R jrklasen relationshipmm Mixed Models with relationship matrices in R jrklasen trackrecords track running track jrlewi brlm R package for implementing Bayesian restricted likelihood methods jrlockwood HETOP R package for HETOP model jrlockwood JRLmisc J.R.'s Misc R Functions jrlockwood eivtools R package for measurement error modeling jrminter heatmaphelpR Helper functions to create heat maps from dataframes using ggplot2 with limits to color map values jrminter particlesizeR Convenience functions for particle size analysis jrminter rAnaBruker jrminter rAnaLab Helper functions for analytical scientists - especially particle size analysis. jrminter rEDP jrminter rEDS process X-Ray EDS date with R using S4 classes jrminter rFinFuncs R helper functions for financial analysis. A work in progress - not yet ready for prime time. jrminter rPeaks This is a re-write of the R Peaks package maintained by M.Kondrin based upon a C library written by Miroslav Morhac. rPeaks was written to use current build techniques. jrminter rWipeTest Analyze wipe tests from the Tennelec Eclipse software jrminter rWrapStrataGem R wrappers to format data for and run StrataGEM jrminter rXEDS R Code to process X-ray EDS spectra from NIST DTSA-II and NIST Lispix datacubes jrnold DBIExtras Extends the functionality of the R package DBI jrnold KFAS Fork of the R package KFAS jrnold ShinyIntroStats Some Shiny apps for introductory statistics jrnold SocSciData jrnold apsamanu R markdown formats for political science manuscripts jrnold bayz jrnold bps5data jrnold bps6data jrnold datums jrnold dlmextras Extra functions that enhance the R package dlm for estimating dynamic linear (linear state space) models. jrnold examiner jrnold fivemat Better formatting for numbers in R jrnold flatter Simple flattened (sparse) arrays in R jrnold ggthemes ggplot themes and scales jrnold groundcontrol An R package to generate data-only R packages of flight data, like nycflights13, but with a choice of airport(s) and year(s). jrnold marfx jrnold mcmcStats Yet another R package with functions related to the analysis of samples from MCMC jrnold mcmcdb R package for storing and accessing MCMC samples jrnold mcmcdbSqlite SQLite backend for the R package mcmcdb. jrnold mcmcdbStan mcmcdb functions related to rstan jrnold misclinters R package with miscellaneous linters jrnold miscnotes jrnold pols501-notes jrnold pols_math_camp_2014 R package with Shiny apps used in Emory Political Science Math Camp jrnold qss-data jrnold r-checker R package: Data frames with column and table constraints. jrnold r-smss R package with datasets from Agresti's SMSS jrnold r-strat statistical strategic models in R jrnold resamplr R package cross-validation, bootstrap, permutation, and rolling window resampling techniques for the tidyverse. jrnold rmdmanuscripts R markdown formats for political science manuscripts jrnold rubbish jrnold seaflights15 An R data package containing all in- and out-bound flights from SEA in 2015 + useful metdata jrnold stanmisc Additional R functionality with regards to Stan; primarily input/output to the command line. jrnold stataXml R package to read/write Stata xml format datasets jrnold textools jrnold uw-swcarpentry jrnold yakf yet another Kalman filter package in R jroberayalas ahnr An R implementation of the Artificial Hydrocarbon Networks jrosen48 csvsplittr Function in R package to split a large CSV into a specified number of smaller CSV Files jrosen48 jmRtools Useful functions in R jrosen48 konfound R package for carrying out sensitivity analysis jrosen48 lme4_effect jrosen48 lme4plotpartial R package to plot partially pooled estimates for a mixed effects model jrosen48 networRkTools ancillary tools for network analysis for R jrosen48 pisaUSA15 Data from the 2015 PISA for students in the USA jrosen48 prcr R package for person-centered analysis jrosen48 railtrails R package with trail data from the Rails-to-Trails Conservancy jrosen48 rsensitivity Package for carrying out sensitivity analysis using R jrosen48 scrapestorify An R package to scrape data from Storify using the Storify API jrosen48 tidyLPA Functionality to carry out Latent Profile Analysis in R jrosen48 tidymixmod something like Latent Profile Analysis using R jrowen rhandsontable An htmlwidgets implementation of Handsontable.js jrs95 lmrse Linear regression with cluster robust standard errors for high-dimensional data jrs95 nlmr Non-linear Mendelian randomization jrvarma jrvFinance R package for financial present value functions and option pricing jrwalker-projects farsfunctions R package supporting US Accident (FARS) data access jrwalker-projects quaker R package to display & map earthquake data jrwalsh MaizeGO jrwalsh MaizeMap jrwalsh MaizeOmics jrwalsh SubGenome jrwishart mwaved mWaveD - R package jrzubizarreta depinf jrzubizarreta scbounds js229 Vennerable Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result. jsanchez25h RODBC Variación del paquete original de R jschoeley LogrankA Logrank Test for Aggregated Survival Data jschoeley ggtheme Minimal Theme for ggplot2 with Additional Options jschoeley hmdget Download Human Mortality Database Data from the Web jschoeley lifequal R-package for calculating lifespan equality from life-tables jschoeley pash Pace-Shape Analysis jschoeley rcpal `R` package providing a list of colour palettes specified by hex-values jschoeley tricolore A balanced color scale for ternary compositions jsdeherrera prioritizationMatrix jsdeherrera shinyBoots jservadio TrialistNof1 jservadio test jsga shinyFiddle Allows the user to change several properties from elements in a R-shiny app. jsgosnell ratlantis Watch jshinb pmlr jsieker DipEx Dip Analysis Extension Tools jsieker DipEx0.3 jsieker MultiMod jsilve24 driver Utility Functions from Justin Silverman jsilve24 philr Phylogenetic Isometric Log Ratio jskoien intamap jskoien intamapInteractive jsks seqR sequence analysis jsks sequence-analysis jsks sequenceR jslefche divpart Hierarchical diversity partitioning using effective numbers jslefche piecewiseSEM Piecewise Structural Equation Modeling in R jsng AirtableR R wrapper to the Airtable API jsng ParseLinks Parse and listify link header strings in R jsphdms runchart An R package for creating run charts. jsphdms stringliner Plot stringline charts (inspired by E.J. Marey’s graphical train schedule) jspijker dgsa Dutch Geochemical Soil Atlas, R Package jsraadt Earhart Calculate Multiple R-squared of a Data Set with Missing Data jsta DataflowR Data handling and interpolation for underway water quality monitoring :speedboat: :dash: :sweat_drops:: jsta LAGOSextra Extra functions to interact with LAGOS jsta contour2bathy Convert a pdf with contour lines to a bathymetric (raster) map jsta dams R interface to the United States National Inventory of Dams 🇺🇸🔧💧 jsta dbhydroR jsta dciR Calculate Directional Connectivity Index without Matlab jsta edenR Everglades Depth Estimation Network R client jsta externalrdata Template for R packages that fetch, cache, and serve data from external sources jsta glmutils Utility functions for working with the General Lake Model jsta glwdr R client for the Global Lakes and Wetlands Database jsta gnis USGS Geographic Names Information System (GNIS) jsta ipdw Interpolation by Inverse Path Distance Weighting :leftwards_arrow_with_hook: 🌊 jsta irlgraph Irregular Landscape Graphs to generate accumulated cost surfaces jsta jsta Personal function library jsta learnglm Resources to learn the General Lake Model jsta nesR Scrape Data from the National Eutrophication Survey jsta nesRdata R package to fetch, cache, and serve the National Eutrophication Survey jsta nhdR R interface to the National Hydrography Dataset :droplet: jsta nlaR R interface to the National Lakes Assessment jsta nml An R package for parsing Fortran namelist files :tophat: jsta nsws National Surface Water Survey Package jsta peatcollapse Cleaning and Assembly of Peat Collapse and Sea Level Rise Data jsta schemeR Visualize SQLite structure with R jsta sfpolymorph Calculate polygon shape metrics jsta smwrQW_experiment jsta sparrow SPAtially Referenced Regression on Watershed attributes jsta speCluster Spectral Clustering in R jsta twilight R interface to the USNO Sun or Moon Rise/Set Data :full_moon: :waning_gibbous_moon: :last_quarter_moon: :waning_crescent_moon: jsta wayback R interface to the WayBack Machine API 🕐🔙 jsta wikilake Scrape lake metadata tables from Wikipedia 🏞 jstaf TestPackage This is a quick tutorial that explains R package development jstaf actmon An R library for processing output produced by TriKinetics' Drosophila Activity Monitor. jstagge monthlypaleo R Package for Monthly Paleostreamflow Reconstruction jstagge paleoAPR jstagge staggefuncs Personal R package for James Stagge. jstarling1 starlib jstarling1 varstar jstockwin EpiEstimApp Source code for the EpiEstim app. jstrat1618 cointosses jstrin summaryoutr Create summary statistic tables for standard reporting jstrunk001 lasR read las data and simple las processing tools jsubei IRDTunaAtlas jtatria euclid R primitives for euclidean geometry jtclaypool POTUS2016 jtclaypool microbiome jtelliott attrition-forecast jtev222 wiql Change ME jtextor MotilityLab R package for analyzing cell tracking data, or any kind of tracks of moving objects. jtextor tiltools R package containing miscellaneous utility functions, mainly for data visualization. jtextor trialMinRand Imbalance-minimizing adaptive randomisation for clinical trials. R package. jtfeld gombedb trying again to make the database work jthaman ciTools An R Package for Quick Uncertainty Intervals jtheorell MyTestPackage This is my first package for R jthurner baseflowchile Data preparation for baseflow analysis in Chile jthurner hbvPSO Particle Swarm Optimization for the HBV Hydrological Model (R package) jthurner ittr jtilly R-travis-container-example Build R Packages using Travis CI Containers jtilly cbpR This R Package downloads and prepares panel data sets from the Census County Business Patterns (CBP) jtilly de.tax.calculator No description or website provided. jtilly knitroR R Bindings for the Commercial Non-Linear Constraint Optimizer KNITRO jtilly matchingR Algorithms for Matching Markets in R and C++ jtilly misc No description or website provided. jtilly statascraper statascraper is an R package that extracts data from Stata log files jtilly taoR Toolkit for Advanced Optimization (TAO) Bindings for R jtkwar GA STAT243 GA Final Project jtleek mypkg This is a test package for advdatasci jtleek rdsmGeneSig A deterministic statistical machine (http://simplystatistics.org/2012/08/27/a-deterministic-statistical-machine/) for calculating and validating a gene signature. jtleek rfitbit An R package to download and play with fitbit data jtleek simplystats jtleek slipper Tidy and easy bootstrapping jtleek sva-devel jtleek testrepository jtleek tspreg An R package for performing top-scoring pairs regression. jtlovell ASE_functions jtlovell PhyGenomicsData.PV2016 Data for the Switchgrass physiological genomics analysis jtlovell deTools jtlovell goldy Functions for calculating breeding values from time-series LICOR auto-log data. jtlovell gscTools jtlovell hal2.fil2.compare jtlovell jtlTools some personal tools I have developed jtlovell limmaDE2 An R package to analyze differential expression via LIMMA functions jtlovell motifHalliiV2 Analysis of Motifs in P. Hallii V2 jtlovell multiQTL jtlovell physGenomicsPVFinal jtlovell pvGxE jtlovell qtlTools jtlovell qtlToolsTutorials jtm508 bayestraj jtm6 test test jtmccr1 HIVEr R Package for functions commonly used in the HIVE analysis jto888 EventTree Initial issue jto888 FaultTree Fault Trees on R jto888 FaultTree.SCRAM Interaction between FaultTree on R and SCRAM jto888 FaultTree.widget Fault Tree Widget on R jto888 abremDebias likelihood based regression, goodness of fit and confidence bound determination jto888 ftree fault tree and event tree back office prototype jto888 xmetric Multi-Echelon Techniques for Replacable Inventory Control jtrecenti NFP Nota fiscal paulista jtrecenti adocao Projeto adoção: somenta CNA e CNCA jtrecenti apresentacaoCNJ apresentacao no CNJ evento 10 anos do JN jtrecenti aulaUFSCar pacote utilizado para o minicurso jtrecenti bnlearn bnlearn package for R, downloaded from CRAN jtrecenti brunoSalama Análises Bruno Salama jtrecenti captchaReceita Quebrando o captcha da receita jtrecenti captchaTJSC Quebrando captcha do TJSC usando o audio! jtrecenti captchasaj Nova versao do pacote captchatjsp, com novas ideias e usando o TJSC como base para criar modelo. jtrecenti captchatjsp Quebrando o captcha do TJSP jtrecenti cea20160329 Apresentação CEA 2016 sobre R e shiny jtrecenti chancedegol scraper chancedegol jtrecenti chordgen Random chord generator jtrecenti cnpjReceita Webscraper que realiza consulta de CNPJ na Receita Federal. jtrecenti crawlr Pacote para ajudar a criar web crawlers e parsers no R jtrecenti criarProva Criar prova a partir de arquivos latex jtrecenti dawid Apresentação sobre Dawid (2000) no Insper jtrecenti ea2 Apresentação EAII 2016 jtrecenti esaj Robô de buscas de todos os sistemas do e-SAJ jtrecenti falrec Falencias e recuperacoes jtrecenti gpim No description or website provided. jtrecenti inpi Resultados INPI jtrecenti jurimetria Pacote do meu mestrado jtrecenti lucrosCessantes Pesquisa Lucros Cessantes jtrecenti medidor jtrecenti music21 python music21 port using reticulate jtrecenti numero_cnj Gerador de numeros CNJ validos usando digito verificador jtrecenti ocputest jtrecenti ocputftest jtrecenti prodtjsp Produtividades do TJSP jtrecenti rcnj Pacote com dados do CNJ, incluindo justica em numeros e outros jtrecenti rusp jtrecenti sabesp Dados e gráficos da sabesp jtrecenti scrapr Making web scraping even easier. jtrecenti seqaloc jtrecenti sptrans Acesso à API OlhoVivo e GTFS da SPTrans jtrecenti stf Ferramentas para web scraping no STF. jtrecenti stj Ferramentas para web scraping no STJ. jtrecenti tensorglm GLM usando tensorflow jtrecenti teses.usp Web scraper teses USP jtrecenti thesis Escreva sua tese em Rmd; compile e terá uma dissertação com formato do IME. jtrecenti tjrj Crawler do TJRJ jtrecenti tjsp Pacote que baixa informações da CJPG-TJSP utilizadas no meu projeto de mestrado jtrecenti tjspCrim Pesquisa TJSP criminal jtrecenti valorCarf Levantamento de dados sobre o CARF para o Valor jtvanleuven Stickbreaker jtvanleuven snowfall demo package juancentro tvm Mirror (probably outdated) of https://bitbucket.org/juancentro/tvm juancholkovich coexnet juandaserni networkD3 juba d3BarGraph Attempt to make a Bar Graph in D3 from within R juba explor Interfaces for Multivariate Analysis in R juba imva Interfaces for Multivariate Analysis in R juba questionr R package to make surveys processing easier juba r-perso Personal R package with convenience and utility functions juba reso R implementation of the RESO graph decomposition algorithm juba rgrs R package that provides functions for beginners and social sciences students or researchers (cross-tabulation, weighting, results export, and maps plotting). juba rmdformats HTML output formats for RMarkdown documents juba rwos R interface to Web of Science Web Services API juba scatterD3 R scatter plot htmlwidget based on D3.js jucdiaz ZOIP R package for regression models for data proportional inflated with zeros an ones. jucdiaz rpaquetep jucheng1992 ctmle Collaborative Targeted Maximum Likelihood Estimation jucheng1992 ctmlejl An interface to julia package TargetedLearning.jl judyh97 TimePackage Time Package, updated 4July, MeganGatesJudy jugdemon isn_infection R Package for the practical exercises of the "Introduction to Social Networks" course at ETHZ. juhernandezv Rpackone Package of R julaiti MSPC an R/Bioconductor Package for combined analysis of Chip-seq replicates juldebar IRDTunaAtlas julia-wrobel DepLabData clean some datasets julia-wrobel depthTests Nonparametric hypothesis tests based on multivariate band depth julia-wrobel registr Register exponential family curves juliafried innolab julian-gehring Rariant The 'Rariant' package identifies single nucleotide variants based on the difference of binomially distributed mismatch rates between tumor and control samples. julian-gehring SomaticSignatures The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments. julian-urbano gt4ireval Generalizability Theory for Information Retrieval Evaluation juliandavirc libreriaDemo Libreria Estadistica R julianfaraway brinla Bayesian Regression with INLA julianfaraway facer R package for analysing facial shape and motion for medical applications julianflowers myScrapers Functions to extract web data from PHE sites julianhatwell arulesimp arulesimp julianje BCI Bootstrapped CIs julianje mcpa monte carlo power analyses julianqz igtracker Immunoglobulin Tracker juliasilge choroplethrUTCensusTract Shapefile, Metadata, and Visualization Functions for US Census Tracts in Utah 🌄 juliasilge janeaustenr An R Package for Jane Austen's Complete Novels 📙 juliasilge packagesurvey Survey of R users on package discovery 📦 juliasilge silgelib Personal R package juliasilge southafricastats Population and Mortality Statistics for South Africa juliasilge tidytext Text mining using dplyr, ggplot2, and other tidy tools :sparkles::page_facing_up::sparkles::page_facing_up::sparkles: juliastr twisteR julieaubert CHMM Coupled Hidden Markov Models julieaubert cobiclust Biclustering via Latent Block Model Adapted to Overdispersed Count Data julieklessner cookies Simple package from blogpost: "Starting from scratch -building a package" julieklessner cornetwork Basic function julieklessner timeseries Function to plot timeseries juliengoo test julienneves MMC R package - Maximized Monte Carlo julienneves mmc julienvollering MIAmaxent R package julienvollering altrMaxent R package: altrMaxent julienvollering maxentmodelselectr R package julierennes denoiseR Regularized low rank matrix estimation julierennes regression juliosergio spitools Tools for generating Standarized Precipitation Index jullybobble datanodes jullybobble jqr R DSL and wrapper around jq http://stedolan.github.io/jq/ jullybobble rahocorasick R interface to a Java implementation of the Aho-Corasick alogorithm for exact string search. julou ggCustomTJ Tweak ggplot2 to my liking jumpingrivers gaugeR jumpingrivers meetingsR A list of R conferences and user groups jumpingrivers prettyB Prettified base graphics jumpingrivers zxcvbnR Password Strength Estimator jun-yan spef jundoll ccc R pkg for the cone-convex hull by complement (ccc-hull) jundoll jmisc my misc R package. jungd ImproveISCAM Improved ISCAM. jungd indyr I am practing. jungd puglover This is strictly for demo purposes junhewk RmecabKo RmecabKo: R wrapper for eunjeon project (mecab-ko) junjiemao foRmatDate 人性化的格式日期字符串的R包 junkka ehahelper Helper function for Event history analysis junkka histmaps R package to generate Swedish historical administrative boundaries junkka movement Popular movement data for Sweden 1881-1950. junkka r-custom Custom R functions junkka scbapi R packge for getting data from SCBs API junkka sweboundaries R data for Swedish administrative boundaries 1977-2008 junkka swepophist Swedish population history data junkoda graph2r junlongsun YPmodel junruidi actcool junyitt function0 junyitt generalFunction junyitt tfunction junzhiye ddp-proj Developing Data Products - Shiny Application juoe sdmflow justLeito nothing No description or website provided. justinjm googleAnalyticsRETL justinkamerman QFASA Quantitative Fatty Acid Signature Analysis justinmcgrath integration_helpers Helper functions for integration routines in R. justinmcgrath li6400reader Create data frames from LI-6400 files. justinmooney ecefR R package to convert from ECEF to LLA. Based on http://www.oc.nps.edu/oc2902w/coord/llhxyz.htm justinnafe NextWord Predict the next word of a series of words. justinnafe TechnicalEvents Get technical events, such as crossovers justinsavoie mypackage jutako Rtools Misc tools for R (personal use) juttaGa jmisc juyeongkim lastfmr An R interface to Last.fm jvanheld RNAseqMVA Evaluation of multivariate analysis methods for the supervised classification of RNA-seq data jvanheld stats4bioinfo jvcasill lingStuff jvcasillas lingStuff jverzani ProgGUIinR R package for book: Programming Graphical User Interfaces in R jverzani UsingR jverzani gWidgets2 Rewrite of gWidgets jverzani gWidgets2Qt Implementation of gWidgets2 API for qtbase toolkit jverzani gWidgets2RGtk2 toolkit implementation of gWidgets2 for RGtk2 package jverzani gWidgets2tcltk An R package implementing the gWidgets2 API for the tcltk package jverzani gWidgetsWWW2 gWidgets API for web programming jverzani gWidgetsWWW2.rapache gWidgetsWWW2 for use with rapache jverzani iterateR Some syntatic sugar for iterating R objects jverzani questionr quizzes through R markdown jverzani useR2012talk Package containing talk on gWidgetsWWW2 at useR2012 in Vanderbilt jvolkening r-mstherm R package for analyzing thermal proteome profiling data jvwong emFlow Utilities for Pathway Commons Guide workflows jvwong emRNASeq The file-based workflow utilities for RNA-seq to Enrichment Map jw120 advent Advent of Code 2017 exercises in R jw156605 SLICER SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0975-3 jwb133 bayesmiss R package for performing Bayesian analysis with missing covariate values jwb133 smcfcs R package implementing Substantive Model Compatible Fully Conditional Specification Multiple Imputation jwbannister Roses Create wind roses using ggplot2 jwbannister Rowens jwbannister aiRsci general functions related to Owens Lake and Salton Sea data analysis jwbannister alamoRiver jwbannister birdcountR No description or website provided. jwbannister dustReport jwbannister lairr jwbannister maricungaVeg jwbannister northstar No description or website provided. jwbannister offlake jwbannister offlakeRoses jwbannister owensData Data functions related to Owens Lake Projects jwbannister owensMaps Mapping data and functions related to Owens Lake jwbannister owensReports jwbannister pRoc2 Functions for R tools on proc2 jwbannister pisweRl No description or website provided. jwbannister seepsVeg jwbannister sensitCal jwbannister sfwcRft jwbannister sfwctR jwbannister siteRoses Command line wind and sand rose generator jwbannister spRinklers Analysis related to Sprinkler BACM study jwbannister ssExceed jwbannister ssReports jwbannister teomR jwbannister twb2 jwbannister windroseR jwbargsten biogonzales_r jwdink churn Contains tools for munging, cleaning, analyzing, and visualizing retention data. jwdink corralR Corral your data for Modeling: Data-Cleaning, Feature-Creation, and Model-Organization jwdink eyetrackingR This package is designed to make dealing with eye-tracking data easier. It addresses tasks along the pipeline from raw data to analysis and visualization. jwdink survbayes Tools for bayesian survival-regression, with Stan and MAP jwdink tidysurv An R Package for Tidy Survival Analysis jwdink untitled jweile hgvsParseR An HGVS string parser for the R programming language jweile rapimave R-API for MaveDB jwijffels BelgiumMaps.Admin Administrative boundaries of Belgium based on OpenStreetMap data jwijffels BelgiumMaps.OpenStreetMap OpenStreetMap data from Belgium jwijffels BelgiumStatistics Open Data and Maps of Belgium jwijffels ETLUtils Utilities for easily loading big data from relational databases directly into ffdf objects in R. jwijffels LStat LStat R course package jwijffels taskscheduleR Schedule R scripts/processes with the Windows task scheduler. jwijffels textrank Summarise text by finding relevant sentences and keywords using the Textrank algorithm jwillisch xmlAnnotate jwills lineage An R package for tracking the transformations applied to the vectors in a data frame. jwinternheimer buffer buffer jwjackson confoundr Diagnostics for confounding of time-varying and other joint exposures jwmortensen roster jwolfson CNB Code for Censored Naive Bayes jwolfson GLiDeR jwolfson cesens CESens: Causal Inference for Sensitivity Analysis via Principal Stratification jwolfson medMatch medMatch: A matching-based approach to assessing the mediating effect of a biomarker jwolfson threeboost ThrEEBoost: Variable selection and prediction based on estimating equations jwolfson visparty Development of the visparty package jwoollia DenHaag Simulations for managing inbreeding. jwpestrak plpncs jwyatt85 MRmP Multilevel Regression & Marginal Poststratification jxu1234 MeDEStrand R package MeDEStrand jy-r Rmcdm Multicriteria decision making methods for R jy-r Rsimplex Implementation of simplex method in R. This implementation is not computationally efficient and goal is just to create simple educational solver, which can be somewhat useful to check manual calculation of simple exercises. jyanglab g3tools An R packages for Genomics, quantGen, and popGen studies, especially for crop species. jyanglab methylome-mcmc jye56 funcFARS Functions for handling fatality data in Fatality Analysis Reporting System (FARS) jyeh0909 test jyfeather BCTR Brain Connectivity Toolbox in R jyfeather minimumDOE jylhaisi post-processing-mos-point-utils A brief collection of R functions used in MOS point data analysis jyucsiro knlibr R Library for Knowledge Network jyuu censbus jyypma SparseGrid Sparse grids can be used to numerically approximate integrals of high dimension, with fewer nodes than grids constructed by a product rule. SparseGrid is an R translation of the Matlab code on http://www.sparse-grids.de jyypma ipoptr ipoptr is an R interface to Ipopt (Interior Point Optimizer), an open source software package for large-scale nonlinear optimization. It can be used to solve general nonlinear programming problems with nonlinear constraints and lower and upper bounds for the controls. Ipopt is written in C++ and is released as open source code under the Eclipse … jyypma nloptr nloptr provides an R interface to NLopt, a free/open-source library for nonlinear optimization providing a common interface to a number of different optimization routines which can handle nonlinear constraints and lower and upper bounds for the controls. jyyu ScreenBEAM Gene-level meta-analysis of high-throughput functional genomics (RNAi or CRISPR) screens. jyyulab NetBID Network-based Bayesian Inference of Drivers jzsh2000 jzshr R/jzshr: A package with jzsh2000's personal R code jzwolski tennisR k-raczkowska MMSE k-raczkowska RMeter k10dayogi autocpx first commit k10dayogi dhondt-method Dhondt method package in R kabagg keithUtils mostly scripts to help make project structures consistent kabagg testingTemplates scripts and tweaks to customize report look and feel kablag CuteSeq Create HTML colored GenBank sequence kablag RDML RDML data import for R kablag pcrPlate Shiny PCR plate input kablag shinyMolBio Molecular biology visualization tools for Shiny apps kahaaga chaoticmaps A collection of chaotic maps kahaaga shinymodules Wrappers for common shiny modules. kahaaga tstools kaihusmann Aushaltungsoptimierung kaihusmann optimization kainhofer r-life-insurance-contracts kainhofer r-mortality-tables R package implementing actuarial valuation tables (period and cohort life tables) and also general insurance contracts kainhofer r-valuation-tables R package implementing actuarial valuation tables (period and cohort life tables) and also general insurance contracts kajomano cuRious Simple Neural Networks with CUDA and R kakes-candy mySetwd kalden spartan Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan kaldhusdal confusion kaldhusdal distributions kaldhusdal psglmm kaldhusdal solr kalimu LimeRick Bridge between LimeSurvey and R (and Shiny) kalimu genderizeR R package for gender predictions kalimu openPoland R package for communication with OpenPoland.net API - a gate to open data in Poland kalinn ccl kalinn iqLearn Interactive Q-learning in R kalinn weightedSVM Weighted Support Vector Machines in R kallhoffa Rfunspaceadventure Have fun in space! kamapu Lexiguel A mingle-mangle of functions for R kamapu conosur Retrieving information from "Flora del Conosur" kamapu dfplus Data frames with metadata kamapu taxlist Handling taxonomic lists kamapu taxsearch Search methods for taxonomic lists kamapu vegtable Handling vegetation-plot data sets kamapu vegtable2 Extended version for personal use kamapu vegtables Handling vegetation-plot data sets kamapu vegtables2 Extended version for personal use kamermanpr BootCentral kamermanpr PubMineR kamermanpr colouRBG kamermanpr easyboot kamermanpr geojsonBASIC kamermanpr ne2geojson Download and convert Natural Earth shapefiles to GeoJSON. kamermanpr pubmedRecords Get PubMed records and associated bibliometric information for text mining kamermanpr surveytools kamilien1 patentR Patent analysis and reporting tools in R. kamilien1 patentr patent analysis tool in R kanaku ROptimizely R Optimizely API kanaku mapping-utils kanaku quick_codes kaneplusplus bigalgebra kaneplusplus biganalytics kaneplusplus bigmemory kaneplusplus bigmemory.sri kaneplusplus bigtabulate kaneplusplus bittrex kaneplusplus bittrextools Tools for trading on the Bittrex crypto-currency exchange kaneplusplus ccex An R client for the C-Cex Crypto-currency Exchange kaneplusplus concordance An R package for calculating and testing concordance between datasets. kaneplusplus curtail kaneplusplus ioregression An R package for out-of-core regressions kaneplusplus pirls kaneplusplus preference An R package for designing preference-based clinical trials kaneplusplus snb The Stopped Negative Binomial Distribution kaneplusplus synchronicity kaneplusplus teacher-employment teacher_employment kanishkamisra kani Personal R Package to help me in my analysis kanonizo journal_data Processed data and analysis scripts for journal paper on Test Case Prioritization kaos42 pgee Penalized Generalized Estimating Equations kaos42 pgee.mixed kaquilino eqvis Clean and Visualize NOAA Earthquake Data kaquilino fars Coursera R Packages Class - Week 4 Assignment - fars Package karantibrewal williams karantibrewal williamsmetrics karawoo cbccy Decision-aid for crop producers in the Columbia Basin. karawoo icetest QA/QC for under-ice ecology synthesis data karawoo staRtrek Star Trek functions in R karawoo testpkg karawoo woo Various helpful (to me) R functions karchjd gppmr Implementation of Gaussian Process Panel Modeling in R kardinal-eros linktaxa R package to link two related but not necessarily identical scientific species lists. kardinal-eros sabotag-data Data sets for the sabotag R package. kardinal-eros sabotag-tools An R-package providing tools for the Salzburger Botanische Arbeitsgemeinschaft (SaBotAg) kardinal-eros synoptic Synoptic tables from Vegsoup objects kardinal-eros vegit Utilities for the vegsoup-data repository kardinal-eros voucher create herbarium labels for the vegsoup-data repository karimn econometr karina-rebuli georrtest R package with separated functions for assessing significance of Pearson correlation coefficient on geospatial autocorrelated data. karina-rebuli ggrank Get Google search rank positions of specific url's. karina-rebuli mmc.geor.rtest karina-rebuli packtox karlahrnndz stravavis An R package for producing artistic visualizations of Strava exercise data. karlkumbier irfRegression karloskarekvall crkr Code for linear models with Kronecker structure karolgileta FanpageData Get fanpage data karolgileta ShinyApp Test Shiny App karpadev kobo-for-shinyio To resdistribute koboloadeR from mrdwab/koboloadeR - when publishing my shinyio.app RStudio could not find koboloadeR source. So this is just workaround for this problem. Please see mrdwb/koboloadeR for the source from the package developer. karpatit mechkar Some helper functions for research and predictive modeling karpfen graphreport R package for generating reports about graphs. karpfen stkde karpfen trajectory R package for trajectory analysis karthik-chandrasekar Android karthik-chandrasekar Davis-R karthik coyote Functions from my .rprofile now moved to a package karthik dcTemplate Data Carpentry R lesson template karthik dlab karthik foo karthik foo4 karthik internal-projects karthik mapboxer Mapbox from R karthik rDrop Programmatic interface to Dropbox karthik randNames Random username (+other useful info) generator karthik rdrop2 Dropbox Interface from R karthik repo2 karthik rthings Provides short lists of fake data for use in examples and demos karthik rtodoist R interface to todoist.com karthik temp karthik wesanderson A Wes Anderson color palette for R karthikl6 d3bubbles2 This is repo from https://github.com/jpmarindiaz/d3bubbles. Changes made for text size inside bubbles when image is redrawn. kartiek atlasFuncR ATLAS functions kartiek karFuncR Package of R functions that I use. kartiek srikarFuncR Functions for personal use kartiek vencFuncR kartikeyakirar tsoutlier new kasaha1 kasaBasicFunctions codes for gene analysis kaskarn Testing_area kaskarn causamed Implementation of Tyler Vanderweele's methods for mediation kasparmartens NUTS HMC No-U-Turn sampler (NUTS) in R kasparmartens PolyaGamma OxWaSP module 1 project kasparmartens bayesianHMM kasparmartens ensembleHMM kasparmartens mixtureModels MCMC for Dirichlet Process mixture models kasparmartens oxwaspLDA kasperdanielhansen LeekGroup2 kasperdanielhansen Rgraphviz Devel repository for Rgraphviz kasperdanielhansen bsseq Devel repository for bsseq kasperdanielhansen massay kasperdanielhansen minfi Devel repository for minfi kasperwelbers RNewsflow kasperwelbers corpus-tools Various functions to make bag-of-words approaches to text analysis more user-friendly kasperwelbers corpustools An R corpus class for tokenized texts kasperwelbers network-tools An R package with various functions to create networks kasperwelbers semnet An R package for semantic network analysis kasperwelbers tcorpus An R corpus class for tokenized texts kasperwelbers tokenbrowser Create text browsers from tokenized texts to visualize text analysis annotations kasperwelbers tokenlist Tools for working with token lists in R kassambara datarium STHDA Data Bank kassambara easyGgplot2 kassambara factoextra Extract and Visualize the Results of Multivariate Data Analyses kassambara fastqcr fastqcr: Quality Control of Sequencing Data kassambara ggcorrplot Visualization of a correlation matrix using ggplot2 kassambara ggpubr 'ggplot2' Based Publication Ready Plots kassambara graph3d kassambara miRTarget kassambara navdata Network Analysis and Visualization Data kassambara r2excel Read, write and format Excel files using R kassambara survminer Survival Analysis and Visualization kasterma pgmCourse Lecture notes for course on Probabilistic Graphical Models by Daphne Koller. katehara classilistR Package for R to connect to classilist - both developed during GSoC'16 kateharborne LambdaR R Package for analysing the observable spin parameter of galaxy models kateharborne SimSpin SimSpin - A package for the kinematic analysis of galaxy simulations katehu addhazard An implementation of fitting additive hazards model in R katenambiar pmpa Peptide Microarray Pre-Processing and Analysis kateto PolitwoopsR Extract deleted tweet & politician data from the Politwoops project katharinaingel simrec Simulation of recurrent event data in the total time model katherinekaplan MPApopulationmodels MPApopulationmodels kathrinwy Assignmentweek4 kathryntmorrison outbreakvelocity kathryntmorrison velocitymapr Estimate the Front-Wave Velocity of Disease Spread katiasmirn PERFect katokohaku AlternateLasso R package for Lasso feature selection katokohaku SKmisc katokohaku featureTweakR an implementation to R-package of "Interpretable Predictions of Tree-based Ensembles via Actionable Feature Tweaking" (https://arxiv.org/abs/1706.06691) katrikorpela mare Microbiota Analysis in R Easily katrinleinweber BankStR Imports Weird, Bank-specific CSVs As Standard R Dataframes katwang Linreg katzouchka Director Visualization of related, multi-level RNA-seq data in a dynamic, repurposed Sankey diagram. kauralasoo reviseAnnotations R package to compare transcript annotations and split them into alternative transcription events. kauralasoo seqUtils Semi-random collection of R functions to work with sequencing data. kauralasoo txrevise Construct custom transcript annotations for Salmon and kallisto kauralasoo wiggleplotr A small R package to make sequencing read coverage plots in R. kavetinaveen HeuristicsVRP Implementation of heuristic algorithms for finding greedy routes. kaylafrisoli ActiveRL kaylafrisoli BasicRL No description or website provided. kaz-yos distributed Comparison of Privacy-Protecting Analytic and Data-sharing Methods: a Simulation Study kaz-yos mouse Multiple Outputation USEr interface kaz-yos tableone R package to create "Table 1", description of baseline characteristics kazi11 actmon An R library for processing output produced by TriKinetics' Drosophila Activity Monitor. kazmi001 rkfars Peer-graded Assignment: Building an R Package kazutan KobeR201603 kazutan blogdown_test kazutan popRmd kazutan tubeplayR play youtube by R kazutan zousan This is zousan R package. kbanner14 MApp-package No description or website provided. kbanner14 MAsim Package for studying the MA posterior for partial regression coefficients under the g-prior kbanner14 Research_simulations_diagnostics kbanner14 test kbdave314 pgsc-survey-analysis Analysis utility functions for the 2014 MIT Physics Graduate Student Council survey kbenoit LIWCalike R package to extend quanteda to mimic LIWC kbenoit boostTest Test for C++ boost regex functions with R kbenoit quanteda An R package for the Quantitative Analysis of Textual Data kbenoit quantedaData Data package to accompany quanteda kbenoit readtext an R package for reading text files kbenoit sophistication R package associated with Benoit, Munger and Spirling (2017) paper(s) kbenoit spacyr R wrapper to spaCy NLP kbenoit wordshoal quanteda implementation of the Lauderdale and Herzog (2016) "Wordshoal" model kbolab IRtool R libraries for Information Retrieval kbolab distrcox Distribtued cox proportinal hazard regression kbolab moddicom kbolab moddicomEcoSpatF01 Spatial Econometric features for moddicom based Radiomics kbolab moddicomV2 the 2nd version (WIP) of moddicom ( light and documented ) kbolab pMineR kbolab pancabbestia Lo sanno robberto eNNicola kbolab punKarlotta Distributed All kbolab radioP kbolab ste kbose28 FarmTest Factor Adjusted Robust Multiple Testing kbose28 farmtest Factor Adjusted Robust Multiple Testing kbrannan bacteriaSourceModelControl kbrannan bacteriaSourceModels bacteria source sub-models kbrevoort apor Average Prime Offer Rate kbrevoort cbsa An R package for determining the relative income of Census tracts, as defined by the Community Reinvestment Act. kbrevoort kpbkh Helper functions that I've written for knitr/RMarkdown kbrevoort tidysynth What the package does (short line) kbrix brixtools Some statistical methods for non-life insurance kbrix smooth Bivariate smoothing, first assignment. kbroman GNapi R package for connecting to the GeneNetwork API kbroman bp Test package for Bret Larget's bp code kbroman broman R/broman: A package with Karl Broman's personal R code kbroman docerror R package to test roxygen2 documentation of datasets kbroman fingers Identifying clusters of related individuals kbroman geesibsor Odds ratio for siblings by GEE kbroman horizon R package to make a static horizon chart with cubism.js kbroman labstat R package with datasets used in an old course on Statistics for Laboratory Scientists kbroman lineup R/lineup package to detect sample mix-ups between two sets of measurements kbroman lineup2 R package to detect sample mix-ups between two sets of measurements kbroman lmem.gwaser R package lmem.gwaser kbroman lmem.qtler R package lmem.qtler kbroman lmmlite Simple port of pylmm: linear mixed models for GWAS kbroman miner R package for controlling Minecraft via API kbroman mygmailR Send myself emails or texts, using the gmailR package kbroman negenes Estimating the number of essential genes in a genome on the basis of data from a random transposon mutagenesis experiment, through the use of a Gibbs sampler. kbroman npem Analysis of cell proliferation assays kbroman qtl R/qtl: A QTL mapping environment kbroman qtl2mongo R/qtl2 package for reading/writing QTL objects to/from Mongo databases kbroman qtl2sqlite R/qtl2 package for reading/writing QTL objects to/from SQLite databases kbroman qtlcharts R/qtlcharts: An R package for interactive QTL graphics kbroman qtlsim Software for testing QTL analysis via simulations kbroman ricalc Genotype probability calculations for multiple-strain recombinant inbred lines kbroman simBM An example R package for http://kbromanTools4RR kbroman simcross R package to simulate and plot general experimental crosses kbroman testjs R package to test use of htmlwidgets kbroman testpkg R package to test out stuff (it's otherwise useless) kbroman testsysfile A throw-away R package for testing some stuff kbroman xiuyuma kbroman xoi R/xoi: Tools for analyzing crossover interference kbseah mass2adduct kburnham bobdylanr kcatalfamo workouts kcf-jackson cleanIGRA R package: Integrated Global Radiosonde Archive (IGRA) data pre-processing kcf-jackson csv2sql R package: A wrapper to convert csv files to sql database kcf-jackson glmGraph kcf-jackson glmSimData R package: Generalised Linear Model(GLM) data simulation kcf-jackson jsReact R package: Modelling in R. Interactivity in JS. Best of both worlds. kcf-jackson maniTools R package: Manifold learning in R kcf-jackson rvArithmetic This explores building a simple probabilistic programming language (PPL) from scratch. kcf-jackson wandeRer R package: A block-based, self-correcting stochastic search algorithm kcha psiplot R package for plotting PSI values generated from VAST-TOOLS kcha193 infoDecompuTE infoDecompuTE: Information Decomposition of Two-phase Experiments kcha193 normalr kcha193 simarioV2 kciomek hasseDiagram kciomek rorutadis An implementation of Robust Ordinal Regression for value-based sorting kciomek vfranking kconnor20 my-first-project kcstreamteam1 wlRd-package kcucchi HZinv Supports HZ 1D inversion project kcucchi gPrior kcucchi generalizedPrior Generation of objective informed priors kcucchi rPrior kcucchi rPriorSynthetic rPriorSynthetic kcucchi vdke variable kernel density estimation kcucchi vkde variable kernel density estimation kdaily MEMA MEMA Preprocessing, QA and Normalizing Functions kdaily rSynapseHelpers kdaily shinyPathway Use R Shiny for exploratory analysis of Pathway Commons pathways through R cytoscape.js kdecouck visTimeline R package, Interface for R (htmlwidgets) to vis.js library for timeline visualization kdgosik NotebookToSite R package to make an RMarkdown file Notebook and turn into a static website kdgosik scRipt Single Cell R interactive playground tool kdkorthauer MADGiC R package to identify cancer driver genes from somatic mutation data kdkorthauer dmrseq R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing kdkorthauer scDD R package to identify genes with differential distributions in single-cell RNA-seq kdybala bioenergmod kdybala pbdistance keaven gsDesign Group sequential design for clinical trials keaven nphsim Simulation and power calculations for time-to-event trials keberwein baseballDBR A tool to gather and analyze data from the Baseball Databank maintained by the Chadwick Bureau or the Lahman Database, maintained by Sean Lahman. Provides ETL and analysis tools for sabermetrics and advanced statistics. keberwein blscrapeR A tool to gather, analyze and visualize data from the Bureau of Labor Statistics (BLS) API. Functions include segmentation, geographic analysis and visualization. keberwein blsmaps Flattened longitude and latitude data, included FIPS codes, suitable for mapping geographical data from the Bureau of Labor Statistics and other US Government agencies. keberwein fipsmapR Flattened longitude and latitude data, included FIPS codes, suitable for mapping geographical data from the Bureau of Labor Statistics and other US Government agencies. keberwein gameday_dev development version of mlbgameday for major revisions keberwein krisUtils R package with my personal utility functions keberwein lahmanDB keberwein mlbgameday Multi-core processing of 'Gameday' data from Major League Baseball Advanced Media. Additional tools to parallelize large data sets and write them to a database. keberwein moneyball keberwein tableau.restR Concept keberwein tidygameday concept keberwein tidypitch concept keberwein usmapR keblu nse Offers mutliple ways to calculate numerical standard errors (NSE) of univariate (or multivariate in some cases) time series. keboola app-tree Custom KBC application for determining tree depth in a table keboola backend-r-client keboola docs-custom-science-example-package Example repository for Documentation of Custom Science keboola docs-custom-science-example-r-ci-testing Example repository for Documentation of Custom Science keboola docs-custom-science-example-r-package Example repository for Documentation of Custom Science keboola docs-custom-science-example-r-subclass Example repository for Documentation of Custom Science keboola ex-facebook keboola padak-kachna-demo keboola provisioning-r-client Keboola Connection Provisioning API client in R keboola r-application R Application base class keboola r-custom-application-example-package keboola r-custom-application-example-simple Sample application for docker custom component keboola r-custom-application-tree Custom KBC application for determining tree depth in a table keboola r-docker-application R ancestor class for docker applications keboola r-luckyguess R application which is used as backend for LuckyGuess application keboola r-transformation Application for running R transformations in R keboola redshift-r-client Redshift driver for R keboola sapi-r-client keboola shiny-lib Shared library for Keboola Shiny apps keboola shinyapp-deployment keboola sliced-file-compiler kecoli PAenhance PerformanceAnalytics Enhancement kecoli kirk kecoli mpo Companion to Modern Portfolio Optimization with R, 2nd Edition kedoctorj tlowespring16 Spring 2016 R Programming keedio Rkeedio Keedio functions for R keepcosmos budongsan 주택 실거래가 분석을 위한 실 Datasets 및 함수 제공 R package keepsimpler ComplexNetwork Tools for Complex Networks keepsimpler KSEcology KeepSimpler 's functions for Ecology keepsimpler QuantR Quantitive Trading Functions keepsimpler StabEco Stability of Ecological Systems keepsimpler perturbEcol Simulation of ecological dynamic systems under environmental perturbations keepsimpler sdcn Structures and Dynamics on (of) Complex Networks keesmulder CircGLMBayes R Package for a Bayesian Circular GLM keesmulder circglmbayes R Package for a Bayesian Circular GLM keesmulder flexcircmix An R package to fit mixtures of flexible circular distributions, in particular with von Mises based symmetric inverse batschelet distributions, which allow for peaked distributions. kehraProject kehra An R package to collect, assemble and model air pollution, weather and health data kehraProject rdefra An R package to interact with the UK AIR pollution database from DEFRA keithabailey PRMTools PRMTools keithschulze supr Analysis of single-molecule localisation and super-resolution microscopy data. kelli-jean easyR R Package to make R easier to use. kellobri publicTestPack kellybotero G2F kellydavid shinyr-stats-project A simple example of linear regression in R kellygallacher arimnet analyzing river monitoring networks kellylab infograf R functions kemacdonald cogsci2016 R package for creating a submission to CogSci 2016 kemacdonald kmetR Helper functions for reading in eye tracking data generated by the SMI IDF converter utility kemacdonald kmr Package with personalized R functions, themes, and rmarkdown template kemacdonald lwl Helper functions for reading in looking-while-listening data kendomaniac docker4seq Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers. kendomaniac embl120215 Exercises for EMBL Course 2015 kendonB bellmisc My collection of utility files for personal use kendonB degreedays kendonB gistools My collection of gis tools kendonB mesowest kendonB prismUtils Utility functions for downloading Oregon State PRISM weather data kenhanscombe ukbtools An R package to manipulate and explore UK Biobank data kenithgrey ggQC ggQC kenithgrey rQC rQC kenjisato hwmgr Homework ManageR for GitHub Classroom kenjisato macromodels R package for learning introductory graduate macroeconomics. kenkellner heeparse R package designed to translate raw data from the HEE into the formats required by a variety of common ecological analyses. kenkellner jagsUI R package to Run JAGS (Just Another Gibbs Sampler) analyses from within R kenmansfield foofactors What the Package Does (one line, title case) kenoll cckit Toolkit for Manipulation and Analysis of CC-derived data kent37 summarywidget htmlwidget that shows a single summary statistic kentsisresearchgroup ProteoModlR R Suite for Quantitative Proteomics Pathway Modeling keqiang coolmapr keqiang cyr R wrapper for Cytoscape RESTful API kerguler Barnard Barnard's unconditional test for 2x2 contingency tables kerguler DataCPR Continuous Plankton Recorder (CPR) Data Analyser kerguler towData Continuous Plankton Recorder (CPR) Data Analyser kerr14333 blsSA working with BLS data kerschke flacco Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems keshav-valgen prosper321 keshav-valgen prospervue keshav-valgen prospervue1 keshav-valgen prospervue3 keshav-valgen sales keshav-valgen segmentation Segmentation function keshav-valgen testcpu test repo kestrel99 nlmixr kestrel99 occamsHeader kestrel99 occamsPmx Occams Pharmacometric Tools for Modeling & Simulation kestrel99 pmxTools Pharmacometric Tools for Modeling & Simulation ketanmd futacc future accounting with ledger ketiketi2507 knoema_test ketiketi2507 knoematest keurcien simulate kevin-allen relectro R package to perform analysis of electrophysiological data. kevin-sorat v2viz kevinVervier TiSAn Tissue-specific variant annotation kevinVervier orthopen Learning tasks with orthogonal/disjoint supports kevincdurand1 comcastautotweet kevincdurand1 ibrokers Automatically exported from code.google.com/p/ibrokers kevinlkx metAtools kevinlove data-products kevinlove idb-us-collections No description or website provided. kevinlzheng RegR My regression and scatter plot functions for all regression and classification model and visualization kevinlzheng statemaps kevinrue GOexpress Analysies of gene expression data using Gene Ontology kevinrue GOexpress-original Visualise microarray and RNAseq data with gene ontology annotations kevinrue GOexpress-release Release version of the GOexpress Bioconductor package kevinrue TVTB The VCF Tool Box kevinrue tSVE The Shiny Variant Explorer kevinstadler Rmdanimation An R package for on-the-fly creation and embedding of R animations in Markdown kevinstadler cultevo Measures and statistical tests for cultural evolution in R kevinstadler dem2stl Creating arbitrarily shaped stl files with correct earth curvature. kevinstadler latex-templates kevinstadler momentum kevinstadler scurves kevinushey CFortranHelloWorld Simple example R package showing how you can call Fortran subroutines from C. kevinushey Kmisc A collection of functions for common data reshaping operations, as well as functions for table and plot generation for R Markdown documents. kevinushey RCLI A simple parser for Rscript arguments kevinushey RToolsTest Various tests to exercise the MinGW toolchain with R. kevinushey RcppRoll Fast rolling functions through Rcpp kevinushey SNAPR An R interface to the SNP Annotation and Proxy Search tool. kevinushey addinexamples kevinushey configure Configure R packages for installation with R. kevinushey cronR A simple R package for managing your cron jobs. kevinushey data.table.extras Auxiliary functions to assist in the usage of data.table kevinushey dockerfiles kevinushey later Scoped side-effects and events for R. kevinushey nimrod An example R package including nimrod programs kevinushey rex Friendly regular expressions for R. kevinushey s4inherits Small example demonstrating a bug / misbehaviour in S4 inheritance check kevinushey shinyExtras Helper functions for R Shiny apps kevinushey simple-packrat-project kevinushey sourcetools Tools for reading, tokenizing, and parsing R code. kevinushey timeit Easy profiling of R functions kevinvergin BATSLSA R scripts used for data processing in the manuscript Marine bacterioplankton consortia follow deterministic, non-neutral community assembly rules by Vergin, et al. kevinwang09 SmokyScotch kevinwolz hisafer An R toolbox for the Hi-sAFe biophysical agroforestry model kevinykuo sparklygraphs R interface for GraphFrames kevjohnson healthdata R package that enables automatic downloading for various health-related datasets kevjohnson mymaps kevynemiliano Earthquake kevynemiliano homeworkvf kevynemiliano thefinal keynmol empirist-R keynmol gr_tweetsearch keynmol superdrive A dumb assistant R package for your brain. keynmol valdeece Simple runtime R data structure validation keyuan bitphyloR BitPhylogeny in R keyuan ccube kfeng123 randomizationTest kforner rcpp_progress RcppProgress R package: An interruptible progress bar with OpenMP support for c++ in R packages kfull fars Analyzing Data from Fatality Analysis Reporting System kgilds PythonCourseskwg kgilds getRealpackage R package kgoldfeld ksgMisc kgoldfeld simstudy kgoldfeld testproj kgori svfiltr Filtering structural variants in CTVT kgwinnup neural-network-R Basic neural network written in R khabbazian l1ou Detection of evolutionary shifts in Ornstein-Uhlenbeck models khabbazian looplets Decomposing a graph into loops of size k=3,4,... + a tree khabbazian rdssim A simple package to simulate Respondent-driven Sampling referral process. khabbazian sparseAHC Agglomerative hierarchical clustering for sparse similarity matrices. khademul myfirstpackage khadija-a sampleClassifier khailper swdevcapstone khanimzul demo khaors hydroanalyzer R package to analyze hydrological information khaors rves Interpretation of Vertical Electrical Sounding profiles using R kharoof triangulR GUI interface for Working with General Insurance Data khellton fridge R package for focused ridge (fridge) khliland EMSC Extended Multiplicative Signal Correction khliland MatrixCorrelation khliland RcmdrPlugin.NMBU Basic statistics course plugin for the R Commander khliland baseline R package baseline khliland fixedTimeEvents The Distribution of Distances Between Discrete Events in Fixed Time khliland mixlm Mixed Model ANOVA and Statistics for Education khliland plsVarSel Variable selection methods for Partial Least Squares kholsman NRG R code for Fish Bioenergetics khondula rainR khoo rkhoodown Package for simple rmarkdown templates. khufkens amerifluxr The Ameriflux R toolbox is a collection of functions to facilitate the retrieval and processing of Ameriflux data. khufkens cropmonitor IFPRI crop monitor package to calculate and explore cellphone based vegetation metrics khufkens daymetr An R Interface to the Daymet Web Services khufkens junglerhythms Jungle Rhythms post processing package khufkens leafscanr Automatically extract (colour) leaf traits from leaf scans. khufkens nsidcproc Composites raw NSIDC data files into georeferenced (yearly) stacked geotiffs for easy processing. khufkens phenocamr R PhenoCam toolbox khufkens phenor A phenology modelling framework in R khufkens snotelr SNOTEL R package khughitt smooth.ratio khughitt tritrypdb A small collection of R functions for working with TriTrypDB data files. kidman007 kraemR Andrew's Personal R Package kidzik fda.ts Frequency domain methods for functional time series kidzik freqdom Frequency domain analysis for multivariate time series kidzik freqdom.fda Frequency domain methods for functional time series kidzik freqdom.lin kidzik pcdpca PCDPCA kiendang elhmc An R package to draw samples from a Empirical Likelihood Bayesian posterior of parameters using Hamiltonian Monte Carlo kieranrcampbell SpatialPRo R package for spatial proteomics data kieranrcampbell SpatialStats Statistical methods for spatial proteomics data kieranrcampbell bnlfa Incorporating prior knowledge in single-cell trajectory learning using Bayesian nonlinear factor analysis kieranrcampbell curver Curve reconstruction from noisy points kieranrcampbell embeddr Pseudotemporal ordering of single-cell RNA-seq data using laplacian eigenmaps & principal curves kieranrcampbell mfa Probabilistic inference of single-cell bifurcations kieranrcampbell modelselectionworkshop Methods & data for DTC model selection tutorial kieranrcampbell ouija Interpretable marker-based single-cell pseudotime using Bayesian parametric models kieranrcampbell pseudogp Probabilistic pseudotime for single-cell RNA-seq data kieranrcampbell rstanadvi Small R wrapper for variational inference in Stan kieranrcampbell switchde Inference of switch-like differential expression along single-cell trajectories kiesner r-msbclient kikapp kikapputils Functions that I use regularly kikipengqi prfaqip data handling with R kimjam dfstoolkit kimjam khanELO kimjam qrcutils kimjam srms kimkyungin ncells Calculating the number of cells in single cell RNA-seq experiments kindlychung CollapsABEL kindlychung bedcollr bedcollr kindlychung calculusStewart kindlychung collapsabel2 Implements a generalized version of the CDH test for detecting compound heterozygosity on a genome-wide level, due to usage of generalized linear models it allows flexible analysis of binary and continuous traits with covariates. kindlychung collr2 kindlychung ff ff is a R package for working with vectors that are bigger than memory (imported from CRAN) kindlychung genetics genetics kindlychung kindlychung.github.io kindlychung manqq Manhattan and QQ plot for GWAS results kindlychung qcdh_old_r_pkg qcdh_old_r_pkg kindlychung rbed rbed kindlychung rcpphi rcpphi kindlychung txtutils An auxiliary R package kingaa aakmisc Miscellany kingaa mpifarm An R package for parallel computation using MPI kingaa ouch Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses kingaa pomp R package for statistical inference using partially observed Markov processes kingaa pompExamples Examples of POMP models with data. kingaa subplex Subplex Optimization Algorithm kingaa tao the Great Tao Package kinsigne atSNP_modified Downloaded atSNP repo from chanzuo with small modification to fix error kintany GTExR Package for GTEx data analysis with R kintero kintero.github.io kintero psmr An implementation of Price Sensitivity Meter kintero usbbmap API www.broadbandmap.gov from R. kippchicago deanslistr R API to DeansList api kippchicago kippcolors KIPP compliant colors from [brand guidelines](http://www.kipp.org/brand) kippchicago silounloadr functions for convey and prep data from KIPP Chicago's Silo data warehouse to an R session kippchicago sqrpr Calcuate CPS's School Quality Ratings Policy metrics in R. kippchicago teachboostr R API for the TeachBoost API kippchicago tntpr kippjohnson fragilityindex Repository for the R Package Fragility Index kippjohnson kippr R package with miscellaneous functions kirchkamp zTree Functions to import data from z-Tree into R kirillseva R-buildpack kirillseva ast kirillseva autoenc Sparse autoencoder implementation in clean and readable R kirillseva blink Redis backed persistent memoization for R kirillseva cacher In memory cache interface for R kirillseva dokk Docker-machine utilities for R kirillseva explain Model-agnostic prediction explanations kirillseva loopr Bayesian hyperparameter search for any R classifier kirillseva lrucachier kirillseva mailgunner kirillseva r-package-template A template for R packages with Travis and covr support enabled kirillseva rain Dockerize you tundra container kirillseva rediska A simple redis client for R. kirillseva ruigi Ruigi is a pipeline specialist, much like his python counterpart, Luigi. kirillseva slackr Slack client for R kirillseva somepackage This is how you use drone for blazing-fast CI kirillseva tldrrr tldr client for R kirillseva tune efficient hyperparameter tuning in R kirstengott kiRsten kirstengott kirsten kislerdm gadMaps R-package to get and plot geojson from gadm.org kislerdm sqlEasy Wrapper for some useful R functions to communicate with relational data bases kissmygritts wildlifetools Helper package for wildlife management kisungyou ADMM Algorithms using Alternating Direction Method of Multipliers kisungyou Rdimtools Dimension Reduction and Estimation Methods kisyaman listBackwardEliminatedModels kisyaman mudball kisyaman umbel kitjosh1050 RCharlson Calculates Charlson index and performs risk adjustment for a series of Canada/Ontario Healthcare quality indicators kitman0804 geodeticHK_R Hong Kong Geodetic Datum Transformation kitman0804 hkgeodetic Hong Kong Geodetic Datum Transformation kitman0804 hkspatial No description or website provided. kitman0804 perryr my personal r code kitman0804 utf8files read & write files with UTF-8 encoding kitsonswann resume kitsonswann swannpack Testing Creating an R Package kitsonswann triangle kittolau R-visualize-map kjedrzejewski rmarkdown.helpers kjellpk fit.models fit.models R package kjetilroysland ahw kjgilbert QstFstComp R Package for performing Qst-Fst analyses kjgilbert aNEMOne A package to create Nemo input files and analyze Nemo output files. kjhealy kjhutils Convenience functions for use in R. kjhealy myriad kjhealy socviz Support files for a data visualization course and book kjhealy sourcesans kjnorris fibtestR Travis CI Test Project - Generate Fibonacci Series kjohnsson intrinsicDimension Methods for estimating intrinsic dimension and methods for generating data on manifolds kjsykora earthquake kjsykora faRs Project for Course 3 in Mastering Software Development in R Course kjuraic listdfutil R package for data from multiple files read and plot kjuraic rpeakfit kjuraic rsaxs R package for Small Angle X-ray Scattering experimental data analysis kkatellis TLBC R package to classify human behaviors from accelerometer and/or GPS data using a two-level behavior classifier (TLBC) kkdey CorShrink R package for adaptive correlation and covariance matrix shrinkage: Go back to Workflow page here kkdey CountClust A R package for Grade of Membership model and Visualization of counts data: kkdey GOTnames Names of characters and word lengths in Game of Thrones kkdey GTEX_Github kkdey Logolas R package for Enrichment Depletion Logos (EDLogos) and String Logos kkdey WEAVER Word Enrichment Analysis using VEctor Representations kkdey aRchaic Exploration, clustering, visualization and classification of DNA damage patterns kkdey aRchaic.site Website builder for aRchaic kkdey ashnet Network Learning using adaptive shrinkage (ash) kkdey benchmarking kkdey cellcycleR R package for cell cycle phasing and analysis kkdey classtpx An R package for Semi-supervised Topic models kkdey covtpx Covaraite adjusted Grade of Membership Model (covGoM) kkdey dash Dirichlet adaptive shrinkage for compositional data kkdey dashr R package for Dirichlet adaptive shrinkage and smoothing kkdey ecostructure Visualizing Structure in ecological site-species abundance data kkdey flashr Factor Loading with Adaptive Shrinkage in R kkdey ordtpx An R package for topic model on ordered features kkdey singlecellRNAseqData Bioconductor data package for hosting single cell RNA-seq data kkdey smashtpx Grade of Membership Models with adaptive smoothing of features using SMASH kkdey testpkg kkdey tmcmcR A Rcpp package for fitting RWMH, TMCMC, adaptive RWMH/TMCMC, MC3 and TMC3 chains. kkdey tmcmcR2 A alternate package to check for tmcmcR kkdey topotpx R package for fitting topographical topic models kkdey varselectpx A R package + gh-pages on variable selection in topic models kkeenan02 MsatAllele My version of the MsatAllele R package, with additional functions and faster code kkeenan02 diveRsity diveRsity: A comprehensive, general purpose population genetics analysis package. kkeenan02 diveRsity-dev This repository contains the diveRsity package during major code updates kkeenan02 memgeneMod Personal modification of the memgene package for spatial genetic analysis kkeenan02 spcaHelper A package containing helper function for conducting sPCA on river networks kkholst gof Cumulative residuals kkholst lava Linear Latent Variable Models in R kkholst lava.mixture Mixtures of Linear Latent Variable Models kkholst lava.nlin Non-linear latent variable models via StEM and Laplace approximation kkholst lava.tobit LVM with censored and binary outcomes kkholst mcif Multivariate Cumulative Incidence functions kkholst mets Analysis of Multivariate Event Times kkholst neurocdf Various utilities for handling neuroimaging data in R via netcdf-files kklot smidR Testing kkmann MasterThesis kkmann addinSetWDCurrentFile R Studio addin for switching to currently active file kkmann describeDataFrame kkmann describr kkmann farringtonManning kkmann lm2word kkmann nicernames nicer names for categorical regression coefficients in summary(...)$coefficients kkruups code_envy-android kkruups kkutils Rscript utility package to store my utility functions kkweon NumberBaseball Number Baseball using R6 klainfo DefectData An R package of Defect Prediction Datasets for Software Engineering Research klainfo ScottKnottESD The Scott-Knott Effect Size Difference (ESD) test klainfo cpp-function-name-parser klainfo test-slidify klapaukh astror Code for basic image manipulation of radio telescope images klapaukh hangler An R implementation of Hangle (for fourier shape analysis) klapaukh rsnailfitter R library for matching snails to Raup W & T klapaukh tumblR R library to access Tumblr API klarakaleb roma R wrapper for the OMA REST API klarsen1 Information Information Package klarsen1 MarketMatching klaukh reactor An R Shiny add-on to allow scripting while inside a reactive environment klausspanderen RHestonSLV kleanthisk10 OBeU kleanthisk10 google-motion-charts-with-r Automatically exported from code.google.com/p/google-motion-charts-with-r kleebaum geoelectrics R package to visualize geoelectric resistivity measurement profiles. kleebaum ragram Radargrammetry R package kleinschmidt beliefupdatr kleinschmidt daver Misc. R helper functions kleinschmidt fuckit.R The only R package you really need. kleinschmidt healdvowels Data package for Heald and Nussbaum (2015) vowel means/covariances kleinschmidt nspvowels kleinschmidt phondisttools Analyze phonetic cue distributions kleinschmidt phonetic-sup-unsup Data and analysis for supervised/unsupervised phonetic adaptation experiment kleinschmidt votcorpora A few small collections of voice onset times in a common format klemenzarn ISAlg my classification algorithm package for R kliegr arc Association Rule Classification kliegr marc klitonandrea FQn-Boxplots klmr modules Replacing packages: An alternative module system for R klmr roxydoxy klocey partitions python based code for integer partitioning kloke Rfit Rank-Based Estimation for Linear Models kloke bigRfit kloke gjrfit kloke hbrfit High breakdown rank-based (HBR) estimation for linear models. kloke jrfit Extends Rfit to include estimates and inference for cluster correlated data based on a JR fit. kloke mrfit Multiple rankings (MR) estimates and inference for cluster correlated data. kloke nonparametrics kloke npsm Package for Nonparametric Statistical Methods using R kloke npsmReg2 Description: Covers rank-based estimation and inference for weighted regression, nonlinear, time series. kloke rbgee Rank-Based GEE type estimates klshrinidhi ANTsR ANTs <--> R klutometis R-debug Debug function for R klutometis R-functional Some higher-order functions for R klutometis R-lisp List processing functions (car, cadr, etc.) klutometis R-translate R-bindings for the Google Translate API v2 klutometis rjavax klutometis roxygen klvoje adePEM Assessing adequacy of phyletic-evolution models klvoje test2 km20 farsP Package : Data Summary from US National Highway Traffic Safety Administration's FARS km20 gemalgorithm kmassana phlee kmaurer binsemble binsemble kmaurer iqbin kmcconeghy MDS A R package for Working with Minimum Data Set Nursing Home Assessments kmcconeghy MyProgs Suite of personal functions kmcconeghy Scotty A package with functions for personal use kmcconeghy flumodelr A R statistical software package for estimating attributable influenza morbidity & mortality kmcconeghy mdsr R Package for Analyzing Minimum Dataset Assessments kmezhoud Dosimetry The Human Resources Dosimetry Manager kmezhoud bioCancer :cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis kmezhoud canceR :chart: The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC). kmezhoud radiant.dose :moon: :boom: Medical and Dosimtery data manager http://kmezhoud.github.io/radiant.dose/ kmezhoud reactomeFI 🔥 Reactome Function Interaction Annotation version 2014-2015 kmhaug gama R-package for adjustment of a geodetic free network using the GNU gama project kmiddleton BayesTraitsAnalysis Functions for processing BayesTraits log files. kmiddleton EMG EMG Analysis in R kmiddleton EulerBending Estimate flexural stiffness via Euler-Bernoulli beam bending theory kmiddleton Zar5 Data sets from Biostatistical Analysis kmiddleton abd Data and demos for Analysis of Biological Data (1st ed.) kmiddleton binning Binning of wheel running (R) kmiddleton jnt Johnson-Neyman Technique for ANCOVA kmiddleton kmmisc Miscellaneous R functions kmiddleton zar5 Data sets from Biostatistical Analysis kmjaniak ascent kmob kmob.github.io kmob s4_intro worked examples from Genolini's "A (Not So) Short Introduction to S4" for R (2008) kmyokoyama netvl R package for Network Value Models knappiau TampaWorkshop This repository contains the R package files from the R workshop in Tampa 2017. knausb PlantMorph An R package for the morphometric analysis of plant taxa knausb coveRage Tools to explore sequencing coverage in high-throughput sequencing projects knausb myKitty Dummy R package of use to no one but me knausb pinfsc50 Phytophthora infestans supercontig_1.50 knausb vcfR Tools to work with variant call format files knausb vcfR_docs Documentation for vcfR knguyen63 Schistosomiasis-in-R knights-lab MWAS knightsay MOBA_Built knightsay backtestGraphics Interactively Visual Backtest Results through Shiny Interface knkanna8 Kanna Assignment: Building an R Package knoplab castR Design of Pooled Genome-Wide Libraries knopt usosstats koekvall crkr Code for linear models with Kronecker structure koekvall kpcor Code for linear models with Kronecker structure koenvanbenthem JCRForest koheiw Collocation A tool for taget word-based collocation analysis koheiw LSS Latent Semantic Scaling: Computer-aided dictionary making for text analysis koheiw Newsmap Geographical news classifier koheiw newsmap Geographical news classifier koheiw stopwords R package that contains stopwords for multiple languages kohleth kmisc kohleth ptv_overload kohleth spcreml Fit spatial model using Composite REML kokrah HTShape Shape analysis of high-throughput data kokrah cbcbSEQ Pipeline for DE in rna-seq kokrah qsmooth Normalization of high-throughput genomics data kolaczyk sand Statistical Analysis of Network Data with R koldLight rtests A testing R repository kolesarm BWSnooping Critical values adjusted for bandwidth snooping kolesarm RDHonest Honest inference in regression discontinuity designs kollerma robustlmm This is an R-package for fitting linear mixed effects models in a robust manner. The method is based on the robustification of the scoring equations and an application of the Design Adaptive Scale approach. komalsrathi miRNAEnrich miRNA Enrichment in microarray dataset komisarczyks CheckoutComponent koncina bs2site Used to build the biostat2 and rworkshop websites koncina cfx Load exported csv files from the Biorad CFX manager software koncina elisar Import ELISA OD values from tecan sunrise excel files and perform a 4PL regression koncina iosp IOSlides Plus koncina unilur A rmarkdown template to create two tutorial pdf files: The first without and the second with the solutions. kongdd DataCheck kongdd Ipaper R package: batch download paper using DOIs kongdd MissInfo MissInfo package kongdd floodmap R package: floodmap kongra chR Constraints checker for R kongra koR Common R components kongra kongRa Package that holds some of my R codes. konkam RTTanalyse A package for analysing Rapid Toxicity Test konradedgar extraInserts Simple convenience RStudio add-in inserting assignment operators and pipes konradmayer iadf konradmayer trlboku konstantin-kotochigov R_ml_utils ML framework with common functions koooee depmixS4 koopmans-michaela mcs-qsar kopipejst vyyI kopperud annotation2slouch kopperud slouch Stochastic Linear Ornstein Uhlenbeck Comparative Hypotheses korailR coral R package - List variables of a dataframe koralgooll MulEA MulEA - A Tool for Multi Enrichment Analysis kos59125 DYM Adds 'Did you mean' feature to the R interactive kos59125 Mock-n-Moll R package for creating mock objects kos59125 R2ch 2ch reader kos59125 RaaS R as a Shell kos59125 naturalsort Natural ordering in R kos59125 shadowy A RESTful API Framework for R kos59125 soracomr SORACOM API Client in R kosugitti bmds Bayesian MDS package for R with rstan kosugitti imKmeans kosugitti mkmeans No description or website provided. kosukeimai CBPS R package: CBPS kosukeimai FindIt R package FindIt kosukeimai MNP R package for fitting multinomial probit models using Markov chain Monte Carlo kosukeimai MatchIt R package MatchIt kosukeimai emIRT emIRT: EM Algorithms for Estimating Item Response Theory Models kosukeimai fastLink R package fastLink: Fast Probabilistic Record Linkage kosukeimai mediation R package mediation kosukeimai qss-data R package for data sets used in Quantitative Social Science: An Introduction kosukeimai qss-package R package for data and code used in "Quantitative Social Science: An Introduction" kosukeimai qss-swirl Swirl Lessons for ``Quantitative Social Science: Introduction'' kosukeimai redist kosukeimai wru Who Are You? Bayesian Prediction of Racial Category Using Surname and Geolocation kota7 MLPipe Machine Learning Pipeline for R kota7 combiter Combinatrics Iterators for R kota7 gogamer R package for Go Game Data kota7 igogame Interactive Go Game Object kota7 kgschart-r KGS Rank Graph Parser for R kota7 librarian Reference Management System Built on Shiny App. kota7 outreg Regression Table for Publication kota7 rddme Sharp Regression Discontinuity Design with Running Variable Measured with Error kota7 rddsigma Sharp Regression Discontinuity Design with Running Variable Measured with Error kota7 rpacktest r package test kota7 shinygo Go Board UI for Shiny Apps kota7 striprtf R Package for Extracting Text from RTF (Rich Text Format) File kota7 tictactoe Tic-Tac-Toe Game on R kota7 zobrist Zobrist Hash Table in R kouroshz creNet A biological network-based regularization model for response prediction using baseline gene-expression data koziek713 PDBClusteR kozo2 PIEROutil A R client library for PIERO (http://reactionontology.org/) SPARQL Endpoint kozo2 cy-rest-ruby kozo2 dat kozo2 ecell.github.io kozo2 keggapi a biogem for KEGG API kozo2 kgml2gpml kozo2 linkdbRDF A R client library for LinkDB RDF Endpoint kozo2 metmask2 kozo2 org.Slycopersicum.eg.db Genome wide annotation for Tomato kozo2 tomatoGeneChip.db kozo2 vim-redpen kpjonsson kpjmisc Miscellaneous R functions kpolimis yandextexttranslater R package to interface with Yandex Translate API for text translation services kproductivity onsapiR An R wrapper for UK's ONS API krahim PWLISPR Percival and Walden (1993) Multitaper and standard spectral estimation tools migrated form LISP to R. This is currently an R package, and it can be enhanced to use the Fortran calls in the filtering package. krahim equinox R package to get equinox dates. This is essentially a wrapper to Berger (1978) Fortran code. krahim fftwtools fftwtools package for R available on CRAN krahim multitaper Multitaper R package available on CRAN krahim multitaperDevelopment R package containing addtional development code for the multitaper R package. kraken19 woeR Weight of Evidence binning of a variable kralljr MCMCsa Bayesian source apportionment kralljr buruli Seasonal Buruli study kralljr handles HANdles Detection Limits when Estimating Sources kralljr homework560R Functions to grade homework assignments kralljr share share R package krishnad2 bstat Some R utilities for Statistical Analysis krishnad2 desstat krishnad2 temp krishnaharsha BullsEyeR krisrs1128 LFExpers Simple latent factor models for the microbiome. krisrs1128 LocFDRPois Functions for performing locfdr estimation when null and alternative are Poisson. krisrs1128 SLURMHelpers Because I always panic whenever I need to parallelize an experiment on Sherlock. krisrs1128 bayesMult Method from "Flexible Latent Variable Models for Multi-Task Learning" krisrs1128 cleanUtils Some functions that have been useful for cleaning data. krisrs1128 ctaUtils krisrs1128 expPCA Exponential family PCA. krisrs1128 gflasso An experimental package for graph-structured multi-task regression krisrs1128 ggscaffold Scaffolding for verbose ggplot figures. krisrs1128 microMulti A survey of multitable methods for microbiome data analysis. krisrs1128 mvarVis Visualize multivariate analysis output. krisrs1128 nmfSim Helper functions for running NMF simulations. krisrs1128 phyloseqD3 krisrs1128 phyloseqExtend A package to extend phyloseq's functionality to new slot types, including NMR, gene expression, and time series data. krisrs1128 probArt Animating things in probability. krisrs1128 structSSI Source code for R package structSSI, implementing the Hierarchical FDR procedure and Group Benjamini-Hochberg procedure. krisrs1128 treelapse kristenmf flowR kritpetra measr Simple R package automating error propagations of measured values without relying on MC simulations. krlmlr-archive rapier Extract the API of an R package krlmlr MakefileR Create Makefiles using R krlmlr MultiLevelIPF Implementation of algorithms that extend IPF to nested structures krlmlr RANN1 Fast Nearest Neighbour Search (wraps ANN library) with Manhattan metric krlmlr Rcpp.stop.test krlmlr S3 krlmlr SwissCommunes Functions for working with the historicized list of communes of Switzerland. krlmlr SwissHistMunData Historicized Swiss municipalities -- data package krlmlr autoroxy Automatically generate roxygen2 documentation krlmlr bindr Parametrized active bindings krlmlr bindrcpp An Rcpp interface to active bindings krlmlr brushthat Brush up your tests! krlmlr condition Missing parts of base R's wonderful condition system krlmlr cooking Cooking with R krlmlr covr.dummy krlmlr deparse A nicer deparse krlmlr dfunbind Column-wise loading of large data frames for authors of R packages krlmlr dp A nicer deparse krlmlr dplyr.benchmark dplyr benchmarks krlmlr dplyr.summarize.dt Test package for dplyr/data.table error krlmlr empty krlmlr enc A simple class for storing UTF-8 strings krlmlr fstplyr A dplyr interface to fst krlmlr ggmapStitch Stitching ggmaps krlmlr grake Generalized raking as described by Deville et al. (1993) krlmlr here A simpler way to find your files krlmlr histmatch Weighted histogram matching krlmlr hms A simple class for storing time-of-day values krlmlr import.gen Generate import calls krlmlr import.roxygen.test krlmlr inlinedoc.example inlinedoc demonstration of roxygen2 version 5 krlmlr kimisc Kirill's miscellaneous functions krlmlr lave A nicer deparse krlmlr lazyforward Simplify maintenance of NSE-SE pairs krlmlr mangow Generate a Manhattan Distance problem from a Gower's distance problem krlmlr mockr Drop-in replacement for testthat::with_mock() krlmlr nl Newline-separated construction of lists krlmlr notifierr Desktop notifications for R krlmlr package.doc.roxygenize krlmlr pdlyr Compatibility package to help loading both plyr and dplyr in the same session krlmlr pkg.subdir.test Source files in subdirectories of R/ krlmlr pkgdep Package dependencies, the tidy way krlmlr plogr R bindings for the plog C++ logging library krlmlr pumpr Assemble a single result for data providers that split their output in chunks krlmlr r-appveyor Tools for using R with AppVeyor (http://appveyor.com) krlmlr rc Reprex for krlmlr rextdata Simple Access to Data Stored in "extdata" Directory krlmlr roxytrace Roclet tracer for roxygen2 krlmlr rpkgweb Package webs: Reproducible research from raw data krlmlr rprojroot Finding files in project subdirectories krlmlr styler Non-invasive pretty printing of R code krlmlr test krlmlr testTestthat Locate testthat directory below R krlmlr tibble Data frames and table sources in "dplyr" style krlmlr tic.drat Building a package and uploading it to a drat repository krlmlr tic.package tic example: Building a package with pkgdown documentation krlmlr tic.packagedocs tic example: Building a package with packagedocs documentation krlmlr ulimit Limit memory usage of R processes on POSIX systems krlmlr utf8 A simple class for storing UTF-8 strings krlmlr wrswoR A package with different implementations of weighted random sampling without replacement in R krlmlr wrswoR.benchmark Benchmark data for the wrswoR package krlmlr wrswoR.correctness No description or website provided. krlmlr wrswoR.sample No description or website provided. kroemerlab ColocalizR ColocalizR is an R-based image-analysis application developed for the quantification of co-localization in high-throughput, on a cell-by-cell basis. kroemerlab GRMeta kroganlab artMS Analytical R Tools for MS krose billys krose boliga krose cvrapi R Wrapper for the danish CVR API. krose eia R wrapper for the EIA api. krose entsoeR krose mkonline An R wrapper for the MKonline API. krose mkonline2 An R Wrapper for the MK Online API. krose nordpoolspotr An R Wrapper to the NordPool Spot API. krose robinhoodr An R Wrapper for the Robinhood.com API krose skm R wrapper for the Syspower SKM API. krose skmr R wrapper for the Syspower SKM API. krose statnettapi R wrapper for the Statnett API krose yrno krose zipdk R Package for Danish Postal Code, Municipality and Region data. kruny1001 episode kruny1001 googleAppScript kruny1001 multi-layer-vids kruny1001 pbshop kruny1001 rRemoteSDSU statsdsu OpenCPU R project krupanss IEDA R Package for the Interactive Shiny Application for exploratory data analysis thru visualization krz synthvar krzyklo fars Fatality Analysis Reporting System (FARS) with R programming language krzyklo ingaasp2rcpp krzyslom lex R package for tracking numeric value transformations. ks4471 R.tools custom wrappers for R ks471 R.helper custom R functions to make life slightly easier ks471 R_helper custom R functions to make life slightly easier ks471 clickyLinux automate queries to Webgestalt for Linux ks471 clickyOSX automate queries to Webgestalt for OSX ksauby GTMNERRproc ksauby Panhandleproc ksauby dataproc R package of data processing and other misc. functions. ksauby modresproc R code to process statistical model results, particularly output from SAS. ksavin SelectableRows A few examples of table binding and cell conditional formatting in Shiny ksavin intrinio ksawicka spup R package: spup - Spatial Uncertainty Propagation Analysis ksawicka spupVis kschmaus gammmbest kshimotsu subgroupLRT subgroupLRT kshirley LDAtools R package to fit LDA topic models (deprecated) ksint kjsutil No description or website provided. ksmzn ThankYouStars Star for installed packages ksmzn codicR An Rstudio Addin for translating Japanese to English by Codic API. ksnt graphicFars graphicFars library for a class ksnt gsedr kstierhoff surveyR A package containing functions used by the Advanced Survey Technologies group at NOAA's Southwest Fisheries Science Center. kstreet13 slingshot Functions for identifying and characterizing continuous developmental trajectories in single-cell sequencing data. ksublee mHawkes ksublee mhawkes ksyan CreddaLeases ksyan rpackage ktaylora PatchStat Performs image segmentation and classification tasks and calculates habitat patch composition and configuration metrics from standard three-band and multi-spectral digital camera imagery ktaylora habitatWorkbench Tools for habitat, climate, and species distributional modelling. ktaylora landscapeAnalysis Tools for getting stuff done in landscape ecology. kthohr BMR Bayesian Macroeconometrics in R kthorstmann consr Compute Consensus for Likert scales kthorstmann horst A small r package with functions used by me and some of my colleagues at HU Berlin kthorstmann jing Messages for and old colleague kthorstmann padis A package of specific data analysis at WFU kthorstmann quest the quest package for questionnaire analysis kthorstmann simcom ktoddbrown FTICR_Processing R script processing FT-ICR data to organic carbon types ktoddbrown rtedem An R repository for terrestrial decomposition models ktoddbrown soilDataR This is an R package that haromonizes some digitial soil repositories. kubistmi verifier First version of R package for data validation, currently being TESTED. kubistmi weatherICAO R package to comfortably download data from airport weather stations, based on weatherData package. kuhnrl30 AuditTools Package to provide tools for audit fieldwork- WORK IN PROGRESS kuhnrl30 DGX R package with a few helper functions for analytics at Quest Diagnostics. kuhnrl30 LabCorp R package to scrape LabCorp's website for location data on their facilities. kuhnrl30 LendingClub A R wrapper for the Lending Club API. The package allows you to manage the funds in your investor account and to make trading transactions. kuhnrl30 LendingClubAccess kuhnrl30 LendingClubData kuhnrl30 LendingClubModel Analysis seeking to reduce the risk of defaults- WORK IN PROGRESS kuhnrl30 NYTimes Competition: Predict NYTimes blog success kuhnrl30 Northwind R package to distribute the data tables from the Northwind sample database kuhnrl30 Ortho Functions to work with financial data at Ortho Clinical Diagnostics kuhnrl30 P2PLending Analysis seeking to reduce the risk of defaults- WORK IN PROGRESS kuhnrl30 RandomActsofPizza Competition: Predict whether a RAOP request will receive free pizza. The analysis was bundled into an R package with vignettes to walk through the exploratory analysis and model building process. kuhnrl30 Touchdown R package helping your Yahoo fantasy football team- WORK IN PROGRESS kuhsibiris MIDEPlots (R ggplot2) Plots used in the MIDE project of the Colombian Ministry of Education kunaljaydesai GA kunaljaydesai GA2 kunstler BIOMEplot R package to plot Whittaker' biomes kuol ROI.plugin.gurobi Gurobi plugin for R package: ROI (R Optimization Infrastructure) kuperov acfunc Personal library of R functions kuperov bdist R library of statistical distributions useful for Bayesian analysis kuppal2 xMWAS kuppal2 xmsPANDA kuraisle psRII kuraisle psRIIfit kuriwaki ballot Package to facilitate reading and tidying transcripts of ballot images. Currently only built for South Carolina Audit files kurowska fars kutasok ryandexwebmasterv3 Connector for Yandex Webmaster API V3 kvantas emyweather Climate data from the Greek National Meteorological Service kvantas hydroscoper R interface to hydroscope kvantas noar R interface to the National Observatory of Athens weather stations kvasilopoulos exdyn Explosive Dynamics kvittingseerup IsoformSwitchAnalyzeR An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data) kvittingseerup test to try out it all :-) kvnkuang pbmcapply Tracking the progress of mc*apply with progress bar. kwanhong66 n2h4_modified kwanjeeraw grinn a Graph database and R package for omic data integration kwanjeeraw grinnWeb R web application for omics integration kwanjeeraw metabox a toolbox for metabolomic data analysis, visualization and ‘omic’ integration kwanjeeraw radiant.wordcloud kwanlin pendor R package to scrape data from Pendo kwats capstone kwilliams83 ldbod https://github.com/kwilliams83/ldbod kwinner ctmm Continuous-Time Movement Modeling. Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data. kwojdalski rpm2 kwstat agridat Agricultural datasets kwstat corrgram Correlograms kwstat desplot Plotting experimental designs for field experiments kwstat gge GGE & GGB biplots kwstat lucid Lucid printing in R kwstat mountainplot Mountain plots for R kwstat nipals Principal Component Analysis with missing data using NIPALS with Gram-Schmidt orthogonalization kwstat pagenum Add page number to R graphics kwstat pals Color Palettes and Palette Evaluation Tools kyarlagadda 499-project kyeager4 ksulib kyeager4 ksulibSearch kyleLesack foofactors Repository for test package assignment in STAT 545 kyleLesack foofactorstest kyleLesack myDeck kylebaron optimhelp kylebittinger kylemisc A few utility functions in R kylebittinger polyafit Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution kylebittinger qiimer Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R kylebittinger usedist Functions for distance matrix objects in R. kylebmetrum dmutate kylebmetrum linkapp Symlink or copy files from one directory to the shiny-server directory. kylebmetrum mdcontent Organize content in markdown files kylebmetrum mrgsim Scripted simulation runs with mrgsolve. kylebmetrum optimhelp kylebmetrum shinylinkapp kylebmetrum shlibtest kylec SeqTools R package for sequencing data analysis kylec testPackage kylehamilton CTTShiny Classical Test Theory via Shiny kylehamilton IRTShiny Item Response Theory with Shiny kylehamilton JamoviMeta Meta-Analysis for JAMOVI kylehamilton MAJOR Meta-Analysis for JAMOVI kylehamilton MAVIS MAVIS: Meta Analysis via Shiny kylehamilton RStars Access to the Digital Universe Data set kylehamilton git-test kylehamilton lavaan.shiny lavaan.shiny: Latent Variable Analysis with Shiny kylehamilton ropenedu-test-site kylewurtz ScrapeBBRef An in-development package to scrape data from Basketball Reference using R. kymathews rpackagetest kypraios epiABC An R package demonstrating ABC methods for infectious disease epidemics kyusque DBDA2E-utilities A Packaged One for DBDA2E-utilities.R in 'Kruschke, J. K. (2015). Doing Bayesian Data Analysis, Second Edition' kyusque g09R Gaussian09 log parser kyusque tikaR Document Parser with Apache Tika in R kzkzmr bcmixed Mixed Effect Model with the Box-Cox Transformation kzouchka Director l-ramirez-lopez resemble resemble is a R package which implements a function dedicated to non-linear modelling of complex visible and infrared spectral data based on memory-based learning (MBL, a.k.a instance-based learning or local modelling in the chemometrics literature). Check the package website! la-sch NOAAeq la-sch fars laandrad SCEDbayes powerful multilevel Bayesian analysis, based on the Bayesian statistical model introduced by Swaminathan et al. (2012), to compute intervention effects in SCED studies labbcb GA4GHclient A Bioconductor package for accessing GA4GH API data servers labbcb GA4GHshiny Shiny application for interacting with GA4GH-based data servers labbcb Rqc Quality Control Tool for High-Throughput Sequencing Data labressler QLearning Q Learning labressler multts labressler omTransport omTransport lachlanmcintosh SAP lacombe-vigne rfcvquery R package to query the RFCV database laderast Consense laderast DSI_explore1 First part of exploratory data analysis with LearnR laderast ExonModelStrain laderast cvdRiskData Cardiovascular Risk Dataset and Data generation script laderast flowDashboard Shiny Modules for visualizing flow cytometry data laderast surrogateMutation R package for finding surrogate mutations (PPI network based oncogene signatures) laduplessis bdskytools A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2. lagvier nsekenya Compile NSE Kenya Data lahgzz plasticbag r package laifeet myrepos_r101 r101_mar17 lajh87 SoccerAnalysis lajh87 ardl lajh87 d3CoMatrix R to D3 Cooccurance matrix lajh87 r2d3MotionChart A D3 Motion Chart Implemented in R lajh87 shiny_user_module A Shiny Module for Shiny Dashboards for User Management with an SQL Database lakikowolfe myTestRepo lamestllama RSERN lamfo-unb Fundamentus Pacote em R para Data Scrapping do site Fundamentus lamfo-unb KernelPCA Projeto para o desenvolvimento do artigo Kernel PCA lamho86 phylolm lamortenera bamsignals R package to quickly obtain count vectors from indexed bam files lamortenera epicseg Chromatin segmentation in R lamortenera kfoots R package to fit multivariate discrete probability distributions to count data lampalork credule credule lampalork mongodb-test lampk IDAR Initial Data Analysis with R lampk Lmisc Lmisc lampk R306 R package includes useful R codes create by members of the biostatistics group at OUCRU (room 306) lampk opendata lampk taskeR lampoverde Der lanagarmire NMFEM lancesiscok12 OSPICode lancesiscok12 OSPIStudentInformation lanceupton gimletr An R package to process, analyze, and visualize library service desk data collect via Gimlet. lancour ignition landesbergn rhymer R package for finding related words through the Datamuse API landroni RcmdrPlugin.Export Rcmdr plugin to export output to LaTeX or HTML code landroni dffilter gWidgets2 GUI to view, search, subset and edit a data frame in R (alpha) langcog childesr R interface to childes-db langcog langcog R package of useful things used by Language and Cognition Lab langcog langcog-package R package of useful things used by Language and Cognition Lab langcog tidyboot tidyverse-compatible bootstrapping langcog wordbankr R package for accessing Wordbank langcomp ggintervals useful intervals to use with ggplot2 langdoc FRelan This is a new and stable version of FRelan R package, maintained earlier in the address izvakomi/FRelan. This version is supposedly less idiosynchronic and better tested. langdoc SaamiDocNet langdoc elan_phontier This is a tool to do regex searches to ELAN files and write results on a new tier. CAREFUL HERE! NOT READY AND INTENDED TO SERIOUS USE! OVERWRITES TO THE ELAN FILE! DISASTER POTENTIAL GREAT! langdoc uralic Public Domain data from Uralic languages langendorfr DMMS An R package to track and forecast interactions in real time using S-maps to calculate sequential Jacobians. langendorfr netcom An R package to create dynamic network alignments. langfob docaids Package For Helping Document Local Variables In R langfob tzar R Package For Emulating Tzar Code-Running Tool From Inside R lantanacamara lightgbmExplainer An R package that makes lightgbm models fully interpretable (take reference from https://github.com/AppliedDataSciencePartners/xgboostExplainer) lantenangeli Aniversario lanzheng0728 chinaWeather for package test larmarange JLutils Some R functions larmarange labelled Manipulating labelled data in R larmarange prevR Source code of prevR, an R package for estimating spatial variations from DHS larmarange scdoc Long scientific documents with R, R Studio, knitr, pandoc, prince XML and zotxt larrysu1115 booktesta larrysu1115 ml-practice-r larryyang1980 ImmGenR larsgr BSplineMI R package - Mutual information using B-Spline smoothed bins larsgr RLinuxModules R package that makes linux environment modules available from R larskotthoff fselector FSelector R package larslau pavpop An R package for analysis of curve data with phase and amplitude variation larssnip microseq R package for basic microbial sequence handling larssnip mpda R package for multiresponse PLS+LDA classifications lashmore MolEndoMatch An R package for molecular endophenotype patient matchmaking. laurajanegraham winmoveR Moving window function utilising speed of data.table and rcpp laurasoul dispeRse Models for paleobiogeograpy lauratboyer ltb.utils Misc generic functions used in my code laurenmh codyn Community dynamics metrics laurensmast RoxygenDocument Building an R package laurensmast TravisTest laurieKell FLTag A packaging for analyse tagging data laurieKell FLife FLR Package for modelling life history relationships. Includes functional forms for growth, maturity, natural mortality and selectivity-at-age. laurieKell FLsz Size based model package based on SEINE laurieKell aspic ASPIC biomass dynamic model extends biodyn laurieKell biodyn biomass dynamic model based on ADMB, includes ref pts and HCR laurieKell diags diagsnostics for stock assessment methods laurieKell ggplotFL ggplot2 graphics for FLR laurieKell kobe Kobe advice plots for tuna RFMOs laurieKell kobe-iccat laurieKell lh R package that uses life history theory to generate fish stocks with particular characteristics laurieKell mpb A package for implementing management procedures, that can be simulation testing using Management Strategy Evaluation laurieKell parallelExe for running binaries in parallel in R laurii opendata.ee No description or website provided. lawinslow adklakedata Adirondack Lake Data Package for R lawinslow hydrolinks National Hydrography Network Dataset Tools for R lawinslow lakemodeltools Some random tools for lake modeling lawinslow nclimdivr NOAA nClimDiv R package lawinslow nhdtools National Hydrography Network Dataset Tools for R lawinslow nlatools R Toolset for the EPA National Lake Assessment Dataset lawinslow nldasR Simple interface to NLDAS data lawinslow nldastools Simple interface to NLDAS data lawinslow paulplot Plots for Paul (name to change) lawremi HelloRanges Introduction to Bioconductor Ranges Infrastructure lawremi VariantTools Tools for Exploratory Analysis of Variant Calls lawremi VariantToolsData Demo data for the VariantTools package lawremi cairoDevice Cairo-based R graphics device that integrates with RGtk2 lawremi exploRase Exploration of genomic data with GGobi, R and a GUI lawremi file.virtual Virtual File System API for R lawremi gooplot Grammatical Object Oriented Plots lawremi rdocdb Document collections in R lawremi restfulr An idiomatic R interface to REST services lawremi rsolr An idiomatic R interface to Solr laynelv isenso intelligent sensory tests: a package of R programming for food sensory & consumer evaluations. lazappi RNAtools Functions for processing RNA-seq data using multiple methods. Provides consistent interfaces for normalisation, testing, visualisation etc. lazappi clustree Visualise Clusterings at Different Resolutions lazappi lazappi My personal R package lazappi mcriPalettes Colour palettes based on the MCRI branding laziob fbradsmod Just the FbRads package with a small change on the code for a fix lazyjustin rPUBG An R wrapper for the pubgtracker.com public API lbartnik collection Object-centered persistent-storage collection for R lbartnik defer lbartnik experiment Simple way to take care of your data while doing MC/simulation experiments. lbartnik mock Mock extensions for testthat lbartnik s4load lbartnik storage lbartnik subprocess lbartnik testthatJUnit lbartnik thread R Threads lbeesleyBIOSTAT MultiCure R Package for Fitting Multistate Cure Models lbeggel adsl Anomaly Detection for Time Series lbeggel shapeletLib lbeisteiner ma No description or website provided. lbeisteiner publ No description or website provided. lbelzile BMAmevt lbelzile ExtLiouv Optimization routines for scaled Dirichlet extremal distribution and composite likelihood lbelzile demoroutines lbelzile lcopula Liouville copulas lbelzile mev Multivariate extreme value distributions lbenitesanchez ALDqr EM algorithm for estimation of parameters and other methods in a quantile regression. lbenitesanchez CensMixReg Fit censored linear regression models where the random errors follow a finite mixture of Normal or Student-t distributions. Fit censored linear models of finite mixture multivariate Student-t and Normal distributions. lbenitesanchez FMsmsnReg Fit linear regression models where the random errors follow a finite mixture of of Skew Heavy-Tailed Errors. lbenitesanchez bssn It provides the density, distribution function, quantile function, random number generator, reliability function, failure rate, likelihood function, moments and EM algorithm for Maximum Likelihood estimators, also empirical quantile and generated envelope for a given sample, all this for the three parameter Birnbaum-Saunders model based on Skew-Normal Distribution. Additionally, it provides the random number generator for the mixture of Birnbaum-Saunders model based on Skew-Normal distribution. lbenitesanchez lqr It fits a robust linear quantile regression model using a new family of zero-quantile distributions for the error term. This family of distribution includes skewed versions of the Normal, Student's t, Laplace, Slash and Contaminated Normal distribution. It also performs logistic quantile regression for bounded responses as shown in Bottai et.al.(2009) . It provides estimates and full inference. It also provides envelopes plots for assessing the fit and confidences bands when several quantiles are provided simultaneously. lbenitesanchez ssmn Performs the EM algorithm for regression models using Skew Scale Mixtures of Normal Distributions. lbenitesanchez ssmsn It provides the density and random number generator for the Scale-Shape Mixtures of Skew-Normal Distributions proposed by Jamalizadeh and Lin (2016) . lbiagini75 Master Coursersa lbiagini75 fars_functions fars_functions lbiagini75 farsfunctions farsfunctions lbianca test_cats_R_package lbianca testkbroman lbianca thesiscode lborke yamldebugger yamldebugger - experimental R package lboxell geomst lbozyk IFSbmp lbraglia QScoring [R package]: questionnaires scoring lbraglia RStata [R package]: A R-Stata interface lbraglia aplore3 [R package]: Datasets from "Applied Logistic Regression" by Hosmer D.W., Lemeshow S. and Sturdivant X. lbraglia aprean3 [R package]: Datasets from "Applied Regression Analysis" by N.R. Draper and H. Smith (3rd ed.). lbraglia ifctools [R package]: Italian Fiscal Code ('Codice Fiscale') Tools for R lbraglia lbagree [R package]: agreement miscellaneous functions lbraglia lbdatasets [R package]: miscellaneous datasets lbraglia lbdiag [R package]: diagnostic accuracy miscellaneous utilities lbraglia lbla [R package]: linear algebra misc utils lbraglia lbls [R package]: labels tools lbraglia lbmisc [R package]: miscellaneous utility functions lbraglia lbrct [R package]: RCT-related utility functions lbraglia lbscorer [R package]: questionnaires scoring lbraglia lbstat [R package]: miscellaneous stat-related utils lbraglia lbsurv [R package]: survival analysis utility functions lbraglia suanselete3 [R package]: Dataset from Kleinbaum and Klein "Survival analysis - A self learning text" (3rd Ed., 2012) lbraglia telegram [R package]: an R wrapper around the Telegram Bot API lbraglia telegram.usecases [R package]: experiments with telegram R package lbraglia telegram.utils [R package]: experiments with telegram R package lbraglia yapomif [R package]: Yet another package of misc functions lbuk NewsStat NewsStat is an R package that extracts key statistical text from online news. lbuk StatIndex A small and experimental R package for analysing and visualising the use of statistical terms in online news text. lbuk brownfieldgrids An R package for creating grid maps of OpenStreetMap brownfield land in London lbusett MODIStsp An "R" package for automatic download and preprocessing of MODIS Land Products Time Series lbusett dumpify Functions for dumb_evaluation in R scripts lbusett frgtool frgtool - new version lbusett ireaRscripts IREA R scripts for spatial processing lbusett lbRscripts My R scripts for spatial processing lbusett lbscripts collection of various R snippets and helper functions lbusett phenoriceR scripts for PhenoRice postprocessing lbusett phenoricesrv lbusett prasia lbusett prova lbusett sprawl sprawl - Spatial Processing (in) R: Amorphous Wrappers Library lbusett sprawl.data companion data package for the `sprawl` package lbybee changepointsHD lcamus pubstat lcecheverris R-creative Entorno gráfico de distribuciones emíricas lcgodoy pat lch14forever microbiomeViz Visualize microbiome data with black magic ggtree lcolladotor derfinder Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches lcolladotor derfinderSimData lcolladotor dots lcolladotor fooPkg Example pkg for a namespace issue lcolladotor pablo2013 lcomm ltools Helper functions I often use in R lcomm rstanmed Bayesian mediation analysis in Stan ldanai tidymodel Make it easy to build models and evaluate model quality ldanon TBclustr TB cluster distribution R package ldbk EMISR EMISR package ldbk REMODnet OpenSeaLab ldbk fishPifct fishPifct : fishery data quality and more ldbk m2b Movement 2 behaviour R package ldbk wksdecc WKSDECC dev ldeassis date.month ldecicco-USGS hydroMaps ldecicco-USGS ldecicco-usgs-github.io ldecicco-USGS tempHydroFab ldemaz dtraster Raster operations with data.table ldemaz rcropmod ldepascalis packages Loads specified R packages, after having made sure they are installed ldiao Gimp Good-Turing Interpolation of Microbiome Pseudocounts lea-urpa MultiGWASTools Tools for exploring and visualizing multiple (100+) Genome Wide Association Study results leachth ReadEKRaw_updated leahfeuerstahler flexmet Flexible Latent Trait Metrics using Filtered Monotonic Polynomial Item Response Theory leakciM swisstool Watch leandromineti DTScanF An R package implementing innovative forecasting algorithm for wind time series leandromineti brioschi leandromineti gaussianBDCD leandromineti gbdcd An R package implementing the Bayesian Detection of Clusters and Discontinuities. leandroroser dbR6 R6 class with methods for database manipulation using SQLite and R leannep rperiodogram A collection of periodogram algorithms in R learner42 CourseraRcapstone R project for the Coursera's R Programming Capstone course learner42 CourseraRpackagesFinal Final peer assignment for R Packages Course in Coursera learnfin learnfin Unsupervised Learning Methods for Financial Decision Making leb-fmvz-usp ptb R package for prevalence estimation and diagnostic test evaluation in a Bayesian framework lebebr01 SPSStoR R package to convert SPSS syntax to R code lebebr01 highlightHTML R package to seamlessly highlight HTML tables lebebr01 irtoys-2 Adding a few additional features to the irtoys package on R to include more flexibility for bilog called from R. lebebr01 jekyll_site lebebr01 pdfsearch Search pdf files for keywords. lebebr01 simglm Regression simulation function lecardozo rworker Celery worker for R tasks! Celery :left_right_arrow: R ledell cvAUC Computationally efficient confidence intervals for cross-validated AUC estimates in R ledell subsemble subsemble R package for ensemble learning lee269 csps Civil Service People Survey stuff lee269 tradetools R package for working with HMRC trade data leebunce leebunce A personal R package for Lee Bunce leekgroup Set Set package leekgroup derfinder R package for DER Finder, a method for differential expression analysis of RNA-seq data leekgroup derfinderData http://www.bioconductor.org/packages/… leekgroup derfinderHelper Helper package for derfinder leekgroup derfinderPlot Plotting functions for derfinder results leekgroup enrichedRanges enrichedRanges leekgroup fdrreg False discovery rate regression package leekgroup phenopredict Use gene expression to predict phenotype sample information leekgroup recount R package for the recount2 project leekgroup regionReport Generate HTML report for a set of genomic regions or DESeq2/edgeR results leekgroup sig2trial Pipeline R package for creating simple gene signatures and testing their value in a clinical trial setting leekgroup swfdr Science-wise false discovery rate package leemcdaniel TestRepo leemcdaniel geeM GEE Solver leemcdaniel newrepo leemcdaniel newrepo2 leeper GK2011 Gaines and Kuklinski (2011) Estimators for Hybrid Experiments leeper MTurkR R Client for the MTurk Requester API leeper MTurkRGUI A Graphical User Interface for MTurkR leeper Rmonkey A Survey Monkey R Client leeper SWORD leeper UNF Tools for Creating Universal Numeric Fingerprints for Data leeper arco Select colors from the Tcl/tk `chooseColors` widget leeper colourlovers R Client for the COLOURlovers API leeper conflictcourse leeper crandatapkgs Find Data-Only Packages on CRAN leeper cregg Simple Conjoint Analyses, Tidying, and Visualization leeper csvy Import and Export CSV Data With a YAML Metadata Header leeper dvn Access to the Dataverse Network APIs from R leeper expResults Tools for calculating, tabulating, and visualizing experimental results leeper exppolcourse leeper ggparliament Simple parliament plots using ggplot2 leeper ghit Lightweight GitHub Package Installer leeper hints Automatically exported from code.google.com/p/hints leeper lookfor R port of Stata's lookfor command leeper lumen Lumen Database (Chilling Effects) API Client leeper lumendb Lumen Database (Chilling Effects) API Client leeper margins An R Port of Stata's 'margins' Command leeper mcode Functions to merge and recode across multiple variables leeper meme Meme Generation in R leeper openfda leeper praiserror A Sarcastic and Demoralizing Error Handler leeper prediction Tidy, Type-Safe 'prediction()' Methods leeper r-aws Automatically exported from code.google.com/p/r-aws leeper reggie Stata-like Regression Functionality for R leeper responserates AAPOR Survey Response Rates leeper rio A Swiss-Army Knife for Data I/O leeper rio.db A Database Extension for 'rio' leeper rio.hdf NetCDF and HDF Extensions for 'rio' leeper rite rite: The Right Editor to Write R leeper rpublons Client for Publons.com leeper rwebvis Automatically exported from code.google.com/p/rwebvis leeper segue Fork of JD Long's "segue" package from Google Code leeper slopegraph Edward Tufte-Inspired Slopegraphs leeper sparktex Generate LaTeX sparklines in R leeper tabulizer Bindings for Tabula PDF Table Extractor Library leeper tabulizerjars Java '.jar' Files for 'tabulizer' leeper test playing around with circleci leeper textcolor leeper ukbabynames UK Baby Names Data leeper webuse Import Stata 'webuse' Datasets leeprichman leepR leerichardson leeR Just a personal R Package for Demonstrative Purposes leerichardson sdsmR R Package for implementation of Statistical Downscaling leerichardson spew Synthetic Populations and Ecosystems of the World leesh0222 sanghoon leeshawn MetaSKAT leeshawn SKAT Sequence kernel association test (SKAT) leeshawn SPAtest Score Test Based on Saddlepoint Approximation leeshawn iECAT leeshuheng cnSentimentR Analyse sentiment of Chinese text. leeskelvin astro Astronomy functions, tools and routines leffj dada2helper leffj mctoolsr Microbial community analysis tools in R leffjr Base leffjr Simpleton Just a test leffjr jackr lefft lefftpack some handy functions and data lefft oakland r package for oak hhi analysis lehmansociology lehmansociology leidos-cap test leifeld btergm Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood leifeld texreg Conversion of R Regression Output to LaTeX or HTML Tables leifeld tnam Temporal Network Autocorrelation Models (TNAM) leifeld xergm eXtensions of Exponential Random Graph Models leifeld xergm.common Common Infrastructure for Extensions of Exponential Random Graph Models leigh-math Developing-Data-Products Data Science Specialization in Coursera leighseverson countyweather leighseverson purexposure Pull and work with CA Pesticide Use Report data leighseverson rnoaa R interface to many NOAA data APIs http://ropensci.org/tutorials/rnoaa_tutorial.html (now with moar crunchy meteo goodness!) leigitcode FARSanalysis leigitcode earthquakesViz R Package for Visualization of NOAA Earthquake Data leipzig asciiruler generate an ascii ruler leipzig berrylogo a better seqLogo lejean2000 CLAV An R package for cluster validation. lem-usp EvoMod-R R functions for dealing with Evomod simulation results lem-usp EvolQG Tools for Evolutionary Quantitative Genetics lemaufpb D3PShiny D3plus for Shiny lemaufpb ECShiny Echarts for Shiny lemaufpb FrontLev Frontier leverage analysis lemaufpb JScharts Javascript charts libraries in R lemaufpb lemadb Custom shinythemes dashboards and functions lemirema stutterPeaks A stutter peak model lemna dothis A very basic "To Do" List for Rstudio lemna ugir some code snippets lendle hdps High dimensional propensity score algorithm in R lengning EBSeq EBSeq: An R package for RNA-Seq Differential Expression Analysis lengning EBSeqHMM EBSeq-HMM: A Bayesian approach for identifying expression changes in ordered RNA-seq experiments lenz99- svmod Search small somatic structural variations in tumor/normal exome data leobarone NECI leobarone Stuff leobarone bRasilLegis leocbc phenability An alternative to carrying out phenotypic adaptability and stability analyses, taking into account nonparametric statistics. Can be used as a robust approach, less sensitive to departures from common genotypic, environmental, and GxE effects data assumptions (e.g., normal distribution of errors). https://cran.r-project.org/web/packages/phenabili… leojoubert WikiSocio MediaWiki API Wrapper leoluyi CRMaddress leoluyi DBIutils Extended methods for DBI leoluyi EOLembrainToolbox EOLembrainTools leoluyi PTTr PTT crawler leoluyi RCrawlerUtils R Crawler Utilities leoluyi addr2gps leoluyi address_crawler leoluyi geocode leoluyi newsr A news crawler in R leoluyi ts_crawler leoly2017 wktmo R package "wktmo": converting weekly data to monthly data leonardgoff rdbounds Manipulation Robust Regression Discontinuity Bounds Estimation in R leonawicz alfresco R package for working with the ALFRESCO wildfire model. Part of the SNAPverse collection of R packages. leonawicz apputils Common utilty functions, settings and references used across multiple Shiny apps. leonawicz mapmate mapmate is an R package for generating and saving a sequence of plots to disk as a still image sequence intended for later use in data animation production. leonawicz maputils Code inheriting from the apputils package with a Leaflet focus. A satellite package in the SNAPverse collection of R packages. leonawicz memery leonawicz randscape Wildfire and vegetation succession simulation leonawicz rockchain leonawicz rvtable Random Variable Data Tables leonawicz snapapps R package containing a collection of SNAP Shiny apps developed by the author. Part of the SNAPverse collection of R packages. leonawicz snapclim R package for accessing curated SNAP climate data. A data package in the SNAPverse collection of R packages. leonawicz snapflex R package for generating and accessing existing SNAP data flexdashboards. Part of the SNAPverse collection of R packages. leonawicz snapgrid Geographic raster layer objects. A data package in the SNAPverse collection of R packages. leonawicz snaplocs R package containing point location data (cities, towns, villages, mines, etc.) in Alaska and western Canada and associated functions. Part of the SNAPverse collection of R packages. leonawicz snapmeta Utilities for SNAPverse leonawicz snapplot R package containing plotting functions tailored to SNAP data. Part of the SNAPverse collection of R packages. leonawicz snappoly Geographic polygon units as SpatialPolygonsDataFrame objects A data package in the SNAPverse collection of R packages. leonawicz snapprep R package for useful data prep and curation from raw SNAP data. Part of the SNAPverse collection of R packages. leonawicz snapsite Code for documentation management around pkgdown. A satellite package in the SNAPverse collection of R packages. leonawicz snapstat The primary R package for graphing and analyzing SNAP data sets. Part of the SNAPverse collection of R packages. leonawicz snaputils Code inheriting from the apputils package with a SNAP context. A satellite package in the SNAPverse collection of R packages. leonawicz snapverse The primary sector package for the SNAPverse. leonawicz uafrstat leonjessen MyFirstRPackage leonjessen PepTools PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data leonjessen SigniSite leonpheng lhtool leonpheng xptdef leorjorge dizzy dizzy - R package to measure distance-based ecological specialisation lepennec foreach leppott ContData2 xxxx leppott ContDataQC Quality control checks on continuous data. Example data is from a HOBO data logger with 30 minute intervals. leppott InvertExtirp Extirpation analysis for benthic macroinvertebrates. leppott MBSStools Suite of tools for data manipulation and calculations for Maryland DNR MBSS program. leppott MMI_NV Generate predicted metrics for Nevada MMI (USU 2012). leppott MMIcalc Calculation of metrics for multi-metric index (MMI) for benthic macroinvertebrates or fish. Inputs are 2 files (master taxa list and 3 column file for Station/SampID, TaxonID, and Count). leppott MMIcalcNV Generate predicted metrics for Nevada MMI (USU 2012). leppott XC95 Extirpation analysis (XC95) for benthic macroinvertebrates and fish for environmental variables. leppott baytrends leppott baytrends033 leppott baytrendsX Testing of baytrends package without smwr references. leppott smwrQWslim Slim version of smwrQW package (orphaned USGS package). lerban CityWaterBalance lerch-a HaplotypR lerch-a Rbowtie2 lerch-a Rswarm lerch-a Rvsearch leskin earthquaketools Earthquake Tools (R Package) for Coursera Capstone Course in "Mastering Software Development in R" Series leslie-huang MApkg Custom R package of functions used in my MA thesis analysis leslie-huang faRc-sentiment-analysis-library Custom R package of sentiment analysis functions for my MA thesis leslie-huang twitterNetworkGraphR R package to extract follower info from Twitter users. Output is ready for network graphing letiR letiRmisc letiR miscellaneous functions lettis prodyna versatile Protein Dynamics Analysis in R levimcclenny BoolFilter levisc8 FocalPhylo levisc8 Fun_Phylo_Package Package to power Fun_Phylo_Shiny levisc8 IPMpack Extending IPMpack to include additional functionality and interface with the PADRINO and MADRINA Databases levisc8 spind spind: Spatial Methods and Indices levisdoban myutilities R Library for common tasks lexadavid wundeR Package for speeding up analyzing data in Wunder lexizhu svenssonm Svensson's Method R Code lf-araujo sempsychiatry Set of utilities for data analysis of neuroimaging and genetic data with SEM. lfex neural-lfe lfpdroubi linmod Friedrich Leisch's linmod package lgallindo CosW No description or website provided. lgallindo EGGGc A new class of distributions called the exponentiated generalized G geometric family motivated mainly by lifetime estimation issues. lgallindo SecKW No description or website provided. lgallindo SinIW An R package to work with the Sine Inverse Weibull distribution. lgallindo TanB No description or website provided. lgallindo tgnn R package dealing with Third Generation Neural Networks. lgascosa Ropensky lgatto BrowserVizDemo2 Learing BrowserViz lgatto MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containers - see http://bioconductor.org/packages/release/bioc/html/MLInterfaces.html for official code. lgatto MSnbase Base Classes and Functions for Mass Spectrometry and Proteomics lgatto PXD000001 Proteomics data set PXD000001 lgatto ProtGenerics S4 generic functions for Bioconductor proteomics infrastructure lgatto ProteomicsAnnotationHubData Annotation hub data for proteomics data lgatto ProteomicsBioc2016Workshop R/Bioconductor tools for mass spectrometry-based proteomics lgatto RforProteomics Using R and Bioconductor packages for the analysis and comprehension of proteomics data. lgatto RpepXML RpepXML is an R package that allows to import and manipulate pepXML files -- see Wiki for more details. lgatto UniProt.REST R Interface to UniProt REST API lgatto biocdownloads Retrieve Bioconductor package download data lgatto biocpkgs Retrieve Bioconductor package download data lgatto camweather Cambridge Weather Data lgatto hpar A simple interface to the Human Protein Atlas lgatto msGUI Mass spectrometry data browser lgatto mstut A tutorial to learn basics of mass spectrometry in R. lgatto pRoloc A unifying bioinformatics framework for organelle proteomics lgatto pRolocdata Data accompanying the pRoloc package lgatto qcmetrics An R framework for quality control lgatto rauthoring An introduction to authoring literate programming documents lgatto rols An R package to query EBI's Ontology Lookup Service (OLS) lgatto rosio rosio: An R interface to OpenSensors.io lgatto rpx R Interface to the ProteomeXchange Repository lgatto sequences Educational package used in an R course to illustrate OO programming and package development. lgatto spatialmap A interface SpatialMap's firebase backend. lgatto sticker Create hex sticker in R lgatto synapter Label-free data analysis pipeline for optimal identification and quantitation lgatto testvigcovr Reproduce vignette coverage error lgatto tipsntRicks A collection R tips and tRicks lgatto yagop Yet Another Gene Ontology Package lgeistlinger EnrichmentBrowser Seamless navigation through combined results of set-based and network-based enrichment analysis lgnbhl bfsdata 🇨🇭 Making Swiss Federal Statistical Office (BFS) data easily accessible to R users lgnbhl learner 📔 Studying foreign language vocabulary directly in the R console lgsilvaesilva mapsBR Mapas das regiões brasileiras lgsilvaesilva spGoogle Development the spGoogle package for users R. lhalvors AtlasCohortExchange lhan22 PROPS PRObabilisitc Pathway Scores lhenneman hyspdisp lhmet inmetr A R-package to Import Historical Data from Brazilian Meteorological Stations lhmet inmetwrangler wrangling data from INMET's automatic weather stations lhubbard-USGS demoPackage lhubbard-USGS preProcessing lhz1029 fakeR An R package to generate fake data given an existing dataset liamkl linreg building R pkg - class example liamrevell PopGen initial commit liamrevell ishihara liamrevell physketch R package for creating "phylo" objects free-hand liamrevell phytools lian0090 F2imputation lian0090 FW Gibbs Sampler for Finlay-Wilkinson Regression lian0090 GibbsFWjags lian0090 Learnlmer lian0090 Learnplot lian0090 R2plink Functions connecting R and plink lian0090 RSKAT2 Perform SKAT test for two or more random components lian0090 SKAT2 lian0090 Techmemo lian0090 learnjags lian0090 simuPoisson Simulate F2 populations based on Poisson distribution for the number of cross-over events liangcj hds R package for the hazard discrimination summary liangqianSheng foofactors Homework 8 lianos multiGSEA A unified interface to a plethora of gene set enrichment analysis methods liao0015 cuteleafletdemo liao0015 pcatestapp liao0015 plotpcademo liao0015 readcsv libbi RBi R package for Bayesian inference with state-space models using LibBi. libcell FeatureSelectionR A new Package used for feature selection in metabolomics libcell rfindDiff liberaldays TensorSlam Sparse Tensor Calculation Scripts for R with Slam Package libscie datr R package to interface with the decentralized dat network. lichri11 circPrime lidaosheng ML lidaosheng myCluster lidaosheng preHandler lidiaad GOpro lidiaad findGO lidiaad hw6 homework lidiaad newGO No description or website provided. lidiaad profilesGO Watch lidom FunRegPoI R-package FunRegPoI liesb BIITE lifewatch marinespeed R code for working with the Marine SPEcies and Environmetal Data (MarineSPEED.org) dataset lifewatch sdmpredictors A compilation of environmental data for species distribution modelling lihsuanchang HOMEWORK1016 MSc Data Science for Business homework due on 16 Oct 2017. lijdsmanalwin test_package For testing purposes lijian13 xiangma Xiangma Reading lijin0303 test Projects lijingya ELMER Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes lijingya MLTools lijinsgithub BLasso likanzhan acqr R package for test likelet G4analysis likelet IDEA Interactive Differential Expression Analyzer likelet InteractiveVenny likelet PlotAppForTBtools A shiny app for TBtools data plot likelet PlotGenomeDistribution likelet volcanoP an R package for simply plot volcano figures based on DE analysis result likunlan KunlanTools R Package lileok projectR R functions for projects lillion emittr lima1 PureCN Copy number calling and variant classification using targeted short read sequencing limetoad qualtricsR limnoliver pah lin-lab CEPSKAT CEPSKAT extends the SKAT framework to the setting of continuous extreme phenotype samples. lin-lab MetaSKAT MetaSKAT is a R package for multiple marker meta-analysis across studies. lin-lab SKAT Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values. lin-lab coxKM R package for conducting SNP-set association tests for right-censored survival outcomes based on a kernel machine cox regression framework. lin-lab iSKAT-GESAT GESAT/iSKAT tests for ZxE (gene-environment interactions), after accounting for main effects of Z (gene), main effects of E (environment) and X (covariates). linacrem farsdocs Documentation project for the Building R Packages course at Coursera lindbrook cholera R Package for Analyzing John Snow's 1854 Cholera Data lindbrook vip lindsayevanslee whomds Calculating results from WHO Model Disability Survey lindsaypino MSstats-patch lindsaysmoore CA global and local alignment of single cell trajectories lindsaysmoore cellAlign global and local alignment of single cell trajectories linguanxi MyPkg lingwhatics daleym Package of R functions I find useful lingxuez sLED An R package for testing high-dimensional covariance matrices linmx0130 r_facepp Face++ for R language. linnylin92 brcdata Brainconductor data linnylin92 brcparcellation Brainconductor parcellation linnylin92 brcstat Statistical wrapper for brcbase linogaliana OpenCancer linogaliana UrbanEco R tutorials and package for spatial analysis linruichai seqriseR Extra ggplot themes and scales used on seqrise platform. linxihui NNLM Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF). linxihui lazyML An R package aims to automatically select models and tune parameters. linxihui sml Machine learning algorithms (e.g., ELM, Gaussian Process, Boosting) for time-to-event/survival outcome linz1112 rwebhdfs-fix edit original webhdfs package lionel- flowery lionel- fontquiver Set of fonts with permissive licences lionel- gghorizon No description or website provided. lionel- ggstance Horizontal ggplot2 components lionel- gsim Geared simulations: Easy computations over posterior simulations lionel- oldie Gracefully retire your functions or arguments that are no longer needed (experimental) lionel- redpen lionel- rlanglabs Github-only package to experiment with rlang extensions lionel- selectr A backend for selecting functions of the tidyverse lionel- testForwardContext lionel- tidyselect A backend for selecting functions of the tidyverse lionel- vdiffr Visual regression testing and graphical diffing with testthat lionelc HavenOnDemand_R This is prepared for HPE HavenOnDemand R client library contest (from TopCoder) lipesk3d PkgR lipingh prfalipingh Programming R Course 2017 Fall lisaerein daphne R package for formatting regression results lisaerein nicetable R package to create summary tables lisalibungan lisalibungan lisalibungan shapeR R package to study otolith shape variation among fish populations lisannehuurdeman simBob liscustodio CnVisual lissahyacinth bstsTest Rapid Test BSTS Models in R lissahyacinth hfittR Track Severity of TfL Tube Delays lit777 BNPMediation liudengfeng stocktools 股票网页数据下载及分析工具 liujohnson118 ProcessRawGenomeFiles liujohnson118 ValidateFluidigm liupeng2117 BIOST2094-Final-Project liupeng2117 MethylSeqDesign liuqivandy scRNABatchQC liuy97 sdcmicrogui liuyifei0226 atdownload liuyufong AnimalGene2QTL liuyufong AnimalQTLDB livioivil SigmaPsi R utilities for Psychometrics livioivil SigmaPsy R utilities for Psychometry livioivil TextWiller Collection of functions for text mining, specially devoted to the italian language livioivil flip dev of R library flip livioivil myFBr extract and visualize the data of your FaceBook profile livioivil neuR livioivil r41sqrt10 livioivil rospo R utilities by associazionerospo.org lixiangchun lxctk My personal toolkit lixiangchun mutation_signature lixiao0214 GA STAT 243 Group Project lixiaomao personalized-dosing-interval lixin4306ren seqana chip-seq, bs-seq, rna-seq processing scripts lixionghui zlmisc zl 's R functions liyi-1989 rcd liyi-1989 spatialcov Double Tapering Estimator for Block Bandable Spatial Covariance liyistat canova CANOVA: Efficient test for nonlinear dependence of two continuous variables liyistat iroc iroc package: Calculate and Plot the ROC curve with elegance. lizandropf mtools Tools for processing Bayesian output files from migrate-n analysis lizc07 iDA iteractive Data Analysis, implemented under shiny lizeyuyuz MLBscrapeR MLB 2017 player statistics scraping R package ljcolling osfconnect A simple R package for reading files from OSF storage ljodea gcfboardr A text dataset harvested from Green Climate Fund Board documents ljofre epg3308 "trabajo final: paquete en R" ljrendell approxmh Approximations to the Metropolis-Hastings algorithm ljrendell ccopy Copying only user commands from console text ljrendell mvtos Tests of second-order stationarity for multivariate time series ljrendell testsExample Unit testing examples for Warwick R User Group ljvillanueva rWDPA Package to query the WDPA (protectedplanet.net) API lkdjiin lkdjiinr Some R utility functions in a package lkshrsch gLVInterNetworks Inference of interaction networks from time series data fitting a generalized Lotka Volterra model lkshrsch iniflowcyts llafuenteDECIDE FAR llangevin FARS FARS, Building R Package, Mastering Software Development in R Specialization llaniewski ASEMOO ASynchronious Efficient Multiobjective Optimization llaniewski ccfdinstr Knitr for ccfd llaniewski gaussAlgebra Efficient implementation of an algebra of polynomial-times-Gaussian functions llaniewski gvector Generalized vector/matrix for R. It's besicaly a list, with arthmetics of a vector/matrix llaniewski polyAlgebra llaniewski rtemplate R Template tool. Something like Sweave, but with more php-like syntax. Just try it already! llefebure nba-stats R Package for retrieving and exploring data from stats.nba.com lloydlow EntropyCorrect lloydlow cats lloydlow dogs llrs BioCor Package to calculate functional similarity between genes llrs STATegRa Forked repository of STATegRa package in Bioconductor lmarusich rmcorr lme4 lme4 Mixed-effects models in R using S4 classes and methods with RcppEigen lme4 lme4pureR A pure R implementation of the numerical steps in lmer and glmer lmeilibr Fars Package creation assignment lmeilibr TravisTest lmguzman FunctionalResponses lmguzman MelissaFactors lmitchell4 earthquake lmkirvan rakeR an implementation of rapid automatic keyword extraction lmullen WPAnarratives R data package with the WPA former slave narratives lmullen gender-data-pkg A data package for R containing historical data sets about gender lmullen geochecker An R package to check the accuracy of geocoded coordinates using a Shiny gadget lmullen mullenMisc An R package of functions I use across projects lmullen ocrquality An R package to measure OCR quality lmullen omekaR An Omeka API client in R lmullen tokenizers Collection of tokenizers for R lmullen tractarian The Tracts for the Times as an R package lmweber regsplice regsplice: R package for detection of differential exon usage in RNA-seq and exon microarray data lnalborczyk ESTER Efficient Sequential Testing with Evidence Ratios lnalborczyk LNmisc lnalborczyk lmisc lockEF BayesianPGMM Bayesian Piecewise Growth Mixture Modeling lockEF BayesianScreening R package to perform Bayesian screening for genomic data lockEF MultiwayClassification Perform Linear Classification with Multi-way Data lockEF MultiwayRegression Perform tensor-on-tensor regression lockedata PackageReviewR Review R packages lockedata TextAnalysis A helper package for Locke Data text analysis courses - and getting Monty Python scripts! lockedata pRojects R package for making projects for various R activities lockedata pres-stub Stub repo containing some basic infrastructure for presentations lockedata rightscale :package: over the rightscale.com API lockedata samplePkgProj A same project created by lockedata/pRojects loerasg INEGI Paquete de prueba logpresso RLogpresso Logpresso SDK for R loicdtx VCF Utilities for working with the Landsat based tree cover data loicdtx bfastSpatial Set of utilities and wrappers to perform change detection on satellite image time-series (Landsat and MODIS). Includes pre-processing steps and functions for spatial implementation of bfastmonitor change detection and post processing of the results. loicdtx ggSpatial Easy plotting of spatial objects with ggplot2 loicdtx latex2Rmd R package to help converting latex files written with sweave of knittr, and containing embedded chunks of R code, into R markdown files, for HTML export loicdtx trmm lojadedados rconsolidaenade Pacote de Consolidação de Informações do ENADE lolibear cats No description or website provided. lolibear psychro lollo-g lollelo The hundredth iteration of my elo implementation lollo-g lollpois No description or website provided. lolow gdx2iamc Convert a serie of gdx files into xls files for submission to IAMC DB lolow gdxtools manipulate GDX files in R lonelu loneluR No description or website provided. lonelu newtest longcli qcilssbb Package for QCI LSSBB Belt Primer longhowlam ikeaScraper longhowlam longhowtest test longhowlam test02 just test longqiuyu DataClean longqiuyu LongDataClean looker lookr An R library for the Looker API (3.0) lordofmagic rtriangle loreinayg 4800project lorenzha hdcd lorenzwalthert assertr lorenzwalthert exceptional Better exception handling for R lorenzwalthert gitsum parse and summarise git repository history lorenzwalthert parsechat lorenzwalthert reprexpkg An P package per Issue 😊 lorenzwalthert strcode Structure your code better. lorismichel potForest potForest R package - Peak-Over-Threshold Forests lorweiuk CREx lorweiuk ocd fitting and simulating the one-choice drift diffusion model (Ratcliff & van Dongen, PNAS 2011) loshita oshitar lotze COMPoissonReg COMPoissonReg R package loubada myownpackage Homework assignment loudermilk stack stackexchange analytics and collaborative filtering loue58 LinkageMapView Linkage Maps and QTL maps in R louellette LinkageMapView Plot Linkage Group Maps with QTLs louis-vines creditr Credit modelling in R louisaslett ReliabilityTheory ReliabilityTheory R package: Tools for structural reliability analysis louisaslett mlmc MLMC routines for the R language louischaman Rstartup Bunch of R functions I regularly use louislimnavong packageproject Repository for the package combining functions lourencoj MBVS-R-Package development home of MBVS lourencoj MbVS development home of MbVS R-package louwerse dutchparl dutchparl - An R package for the Dutch Parliamentary Behaviour Dataset loveakai lsl lovetoken bsid Background Subtraction and Image Denoising (BSID) R package lovetoken kyoboLT Useful R package for kyobo retirement pension marketing team lovetoken rdevteam rdevteam r package lovetoken useful.lovetoken Useful R package for myself low-decarie MPN Most Probable Number calculator low-decarie ggpca ggplot plotting of pca analysis low-decarie growthcurves Growth curve fitting functions recovering ecologically relavant parameters low-decarie temperatureresponse R package for fitting a suite equations for the unimodal response to temperature lowfill lowfill_sum Excercises for Data Science Master lozalojo mem The Moving Epidemic Method R Package lozalojo memapp The Moving Epidemic Method Shiny Web Application lozalojo testpkg Testing R package lpagie chromocounting Rpackage for analysis of chromocounting data lpantano DEGreport Create a cromphensive report of DEG list coming from any analysis of RNAseq data lpantano bcbioSmallRna R package to analyze data after small RNAseq with bcbio lpantano isomiRs analyze isomiRs from seqbuster tool lpantano myRfunctions some functions that I use to increase productivity and reproducibility lpantano r2dropSmart Sync entire folders to dropbox with rdrop2 package lpantano scounts small RNA counts bias correction based on Argyropoulos, et al (2017) lpetito groupedCS Files needed to build R package groupedCS. Code written to facilitate simulations in paper "Misclassified Group Tested Current Status Data" lpfgarcia ECoL Extended Complexity Library in R lpfgarcia uci lptolik R4Kappa Set of packages designed to bridge kappa language modelling and bioinformatics. lptolik RuleDB lpwgit sampleCont lpwgit sampleContamination lrcastro PredCrim Spatio-temporal predictions of crime in Manaus lrdegeest StateACS Scraping data from the U.S. Census Bureau's American Community Survey lrdegeest panelGMM General Method of Moments estimators for panel data in R lrnv actulife A R package that gives tools to do life insurence calculations lrodriguezlujan shinyga Google Analytics for Shiny lromeo CalcioR Analyze Serie A soccer (Calcio) results lrutter RNASeqVisualization RNA-sequencing count table visualization tools lrutter bigPint Analysis and scripts for Google Summer of Code project. lrutter ggenealogy R package for visualizing genealogy datasets lschen-stat MixRF lschen-stat SNPath An R package for pathway analysis of GWAS data (SNPath) lschen-stat mvMISE lschen-stat ofGEM lschmitz retina Tools for visualizing and comparing data from vertebrate retinas lselzer CursoR_UNTDF lselzer bcraR R Interface Banco Central de la República Argentina API lshatkin HorsePackage Github for the package we are creating about horse racing lshep BiocGenerics alpha testing github lshep MFP lshep sendplot GitHub repo for CRAN sendplot package lsheremet imbc Interactive Model-Based Clustering lsilvest dtts.utils Utilities for data.table time-series lsilvest nanoival An interval type for R based on nanotime lsoetens Contactviz Contactviz - shiny app to visualize contact tracing data lspatial sptemUS lstegger fkdR lstmemery imbellus_prog Results for the Imbellus Programming Assignment lstmemery standarddeviation For DSCI 524 lstmemery test lsu2010 myRcode ltanecon BayesImp The Bayesian Imputation Method ltierney Rpkg-proftools Rewrite of proftools ltierney Rpkg-proftools-GUI ltierney Rpkg-simplemmap ltjohnson grade R package, used for grading student responses to Moodle "Remote Processed Questions". ltorgo DMwR2 Functions and data supporting the 2nd edition of the book Data Mining with R by Luis Torgo, published by CRC Press ltorgo performanceEstimation An R package providing an infra-structure for performance estimation and experimental comparison of predictive models ltrr-arizona-edu burnr 🔥 Fire history analysis in R. ltrr-arizona-edu triforce Not ready for production use. - A package to read the TRiDaS dendrochronological standard and communicate with Tellervo servers in R. lubyrex AverageAge luca-scr GA An R package for optimization using genetic algorithms luca-scr msir Model-Based Sliced Inverse Regression luca-scr qcc R package for Quality Control Charts lucacerone simpleroptions Easy to use framework to manage a configuration file in R lucanard CCC CCC method lucanard PEG4D_data_cleaner lucas9999 l.html lucas9999 l.s lucasbyAI RoughSets lucaseosilva stfBR Pacote que extrai os meta-dados referentes às Ações de Controle Concentrado do Supremo Tribunal Federal (STF) lucaskolstad LKmeans An R package for K-means clustering - pleb status but just learning new stuff about r packaging lucaskolstad compartmental R package for comaprtmental modeling lucasmation microdadosBrasil Reads most common Brazilian public microdata (CENSO, PNAD, etc) easy and fast lucasmation presentations lucasnell Rmaw R package for mwlab lucasvenez energy-consumption-analysis lucasvenez granularity granularity is a R package that aims to convert the granularity of precipitation datasets. lucasvenez precintcon precintcon is an R package with functions to analyze the precipitation intensity, concentration, and anomaly. lucasvenez prefann It contains functions to forecast missing precipitation values using a daily precipitation serie. lucatonile AI lucgar synRNASeqNet Synthetic RNA-Seq Network Generation and Mutual Information Estimates luciansmith copynumber Local copy of development version of copynumber, to experiment with getting it to not impute data luciaricocue PracticaR Probar a subir un paquete en R lucidahsu Kai Dataverse 2017 luciorq molecularPatterns lucisouzarj lasa códigos iniciais de análises de séries, modelos ajustados e previsões em r luckyevgeny nasdaqapprove lucusadv chartr chartr is a package for R aimed at making charts with detailed annotations of economic variables lucymerobinson CCAMLRGIS An R package for loading and creating geographic data that is compatible with the online CCAMLR GIS lucymli EpiGenR Inference from both epidemiological and genetic data. Functions generate input files for EpiGenMCMC and to visualise output. lucymli GenBank lucymli LucyR Frequently used custom functions ludgergoeminne MSqRob Robust statistical inference for quantitative LC-MS proteomics ludgergoeminne MSqRobData ludovikcoba rrecsys rrecsys: Environment for Assessing Recommender Systems ludvigla ST_analysis3D ludvigla spaceST Processing and data analysis of Spatial Transcriptomics data. luederm penalizedcpp C++ enhanced version of https://cran.r-project.org/web/packages/penalized/penalized.pdf luiarthur rcommon R functions that I use commonly luiarthur testRscalaPackage Test to see if an RScala package will load properly luisas chromstaR-Influence luisboullosa learnr This Package Helps Luis To Learn How To Create Packages luiscartor csfindex Implementation of the Colony Site Fidelity Index luisgasco Ropensky luishusier magnifyr R package implementing random vectors and inferential methods luismurao hdm hdm a package to model species distribution using temporal environmental data luismurao naturalr get naturalista observations luismurao nichetoolbox The package aims to facilitate the process of building niche models and estimate the species distributions. luismurao ntbox Testing stable functions of nichetoolbox luisvalesilva hwglabr Hochwagen Lab R package luisvalesilva silvar My personal R package luizassis sits luizassis wtsps.R R Client API for Web Time Series Processing Service lukadw11 Clusty R Clusty package lukas-rokka camsRad R Client for CAMS Radiation Service lukas-rokka readrGuess Guesses the format of flat/tabular files lukas1421 chinaTrading R package lukaszdaniel r2rflow Automatically exported from code.google.com/p/r2rflow lukejharmon fossilMedusa lukejharmon netphy lukembrowne dispersim An R package for simulating pollen and seed dispersal lukembrowne rSpagedi An R wrapper around SPAGeDi (Hardy & Vekemans 2002) for executing, parsing, and plotting SPAGeDi data lukembrowne sgsR lukereding redingPlot my R package for plotting lukerobert luketools Personal package of useful R functions lukesonnet KRLS R package for machine learning technique to fit flexible, interpretable functional forms for continuous and binary outcomes. lulizou boostme luoxiaoyu521 baobao sasasasasa luoxiaoyu521 gitskill lurodrigo pformat pformat brings Python-inspired string interpolation and formatting to R luslab hiclipr hiCLIP data analysis package lutsik MeDeCom Decomposition of heterogeneous DNA methylomes lutz-hamel popsom R package for self-organizing maps lvaudor classMapR lvaudor graphiT lvaudor riverbed Area and volume calculation of riverbed changes lvaudor waveleT lvclark polyRAD Genotype Calling with Uncertainty from Sequencing Data in Polyploids lvclark polysat polysat 1.7: tools for polyploid microsatellite analysis lwaldron LeviRmisc Miscellaneous handy functions lwaldron MistakenIdentities A tool for correcting outdated, aliased, or otherwise invalid identifiers. lwaldron ccleWrap Wrapper for importing CCLE data into Bioconductor lwaldron doppelgangR Identify possibly duplicate samples in a list of ExpressionSets lwaldron princyr GSEA of PCA, and eventually subtype finding lweicdsor A-bare-minimum-R-package-CATS To show what a R package looks like lweicdsor OSTSC lwjohnst86 PROMISE.audit Identifies Unexpected Values in the PROMISE Datasets lwjohnst86 PROMISE.desc Describe Common Statistical Summaries for the PROMISE cohort lwjohnst86 PROMISE.methods PROMISE Method Documentation and Data Dictionary Helpers lwjohnst86 PROMISE.scrub Scrub the PROMISE dataset lwjohnst86 ada.2017 Abstract and Presentation Files for ADA 2017 lwjohnst86 aide Aiding With Common And Simple Utility Functions lwjohnst86 carpenter Easily make descriptive statistics tables lwjohnst86 fost lwjohnst86 ggepi ggplot2 Extensions for Visualizing Epidemiological Analyses (Chronic Diseases) lwjohnst86 mason Create a (data) structure for common statistical results. lwjohnst86 npkg Quickly Make New Packages Via Devtools lwjohnst86 ogtt lwjohnst86 prodigenr Project directory generator R package lwjohnst86 readmisc Read Files Generated From Various Scientific Equipment lwjohnst86 rstatsToolkit An R package that contains all of my most used functions lwjohnst86 seer Visualize your data lwjohnst86 seminar2016 Slides and Data Analysis for PhD Seminar Fall 2016 lwjohnst86 worktime Import and Visualize Hours Worked on Tasks lxbfcmt testpack lxiao5 face R package lxy009 Rconnect sql helper class for R lxy009 listdb R package that emulates document database lxy009 svgplots R package to make clean and customizable SVG figures lxy009 weibullpp An R package for reliability engineering statistical analysis lxylky1688 PSTRM lylypham systoxeff lyon-fnal readGallery Read data from Gallery into R lyons422 amazon.s3 lyshaerbin EdgeticDriver Identifying candidate driver mutations that perturbed the molecular interactions. lytics rgcs Google Cloud Storage Wrapper for R lyzs90 TextMiner Mines text for you lzcyzm Travis Transcriptomic Vew of Genomic Features lzcyzm Travis_Dev Develop Version of Travis Package lzcyzm exomePeak exome-based RNA epitranscriptomic sequencing data analysis lzddr createquantile m-Py DOTA2 R package for discrete option test analysis m-Py cower Power analysis for correlation coefficients m-Py minDiff An R-package that creates groups that are made similar with regard to specified variables. m-Py propint Computing confidence intervals to test for interactions in proportions m-Py proportion_interaction R package that implements a confidence intervall for differences of differences in proportions (interaction of proportions) m-azad CLMC R-package for using composite likelihood in multiple comparisons for clustered data m-azad ComLikMulCom R-package for using composite likelihood in multiple comparisons m-clark NineteenEightyR :sunrise_over_mountains: :vhs: like totally rad m-clark heatR Visualizing correlation matrix structure. m-clark lazerhawk An R package of miscellaneous functions. m-dinardo fsquant R package for dealing with peculiarities in loading SPSS files generated by Verint. m-dz mdaddins Misc. RStudio addins m-dz mdmisc Miscellaneous utility functions, mainly for data.tables m-montero LDTr Loss Development Triangle Data in "dplyr" style m-powell faRs R package for FARS data m-raheel RnShinyBeads RnShinyBeads - A Shiny app for RnBeads generated reports m-raheel Rnbeads-Interface m-raheel ShinyBeads ShinyBeads - A Shiny app for RnBeads generated reports m-sudmann-day scrap scrap m070ch ips.tools R Package for IPS mPloenzke bsnR bsnR mRcSchwering Lattirl Gene expression for scRNA-seq mRcSchwering abacus Categorizing Transactions using SQLite and R mRcSchwering shinyTools Some modules for shiny. maRce10 Rraven Integrating R with Raven maRce10 warbleR streamline acoustic analysis in R maartenpaul MSDtracking maartenpaul SMoLR Single Molecule Localization in R maatouk constrKriging Kriging with inequality constraints mabelc SSC The ssc R package mablab rpostgis Interface for R and PostGIS-enabled PostgreSQL databases mablab rpostgisLT R package for transfer of animal trajectory (movement) data sets between PostgreSQL/PostGIS databases and the R package adehabitatLT "ltraj" objects macartan biqq Integrated Inferences macartan hop machLearnNA RDN Reliability-Density Neighbourhood - an Applicability Domain Technique machalen printName machow curryr Currying for easy partial function application machow importr modular importing for R, without having to create a package machow isctools Basic tools for classic and SEM inter-subject correlation analysis machow lavtools helper functions for using lavaan syntax machow reltools Small collection of reliability functions that kept getting repeated across projects. maciejorlos medicover Booking doctors from medicover mackerman44 DABOM Dam Adult Branch Occupancy Model mackerman44 SCOBI Salmonid COmposition Bootstrap Intervals mackerman44 idfgen Import, Manipulate, and Export Genotype Data mackerman44 simNsamp Simple Simulation and Sampling mackerman44 stockCIs Bootstrapping for CIs of Fish Stocks mackerman44 wRigley Baseball data analysis in R macroecology Checklists macroecology ClimaDiff macroecology LGM_GCMs macroecology PaleogeoDB This is the PaleogeoDB for paleoMaps R package macroecology RangeMaps macroecology SDMvspecie macroecology letsR Tools for data handling and analysis in macroecology macroecology paleoMap macroecology pasta macroscian R-Package maczokni selfquant maczokni transportR package for reading data thru APIs from uk transport authorities madams1 floridainmates An R package providing access to data describing inmates in the state of Florida madams1 nbadata An R package providing access to NBA data for the seasons from 1996-97 to 2016-17 maddin79 darch Create deep architectures in the R programming language madedotcom mknapsack madedotcom retl madeleineotway dialects Data Independent Acquisition Library Editing to Convert The Species madlogos aseshms Toolkit of ASEShms madlogos recharts2 An R Interface to Baidu Echart3 Library madsboending boending Personal R package madsyair saehbgrnn maehler nmbuBIN NMBU Bioinformatics R-package maehler nmthemes Some additional themes for ggplot2 maelezo mzgeo maelle eml.tools :mag_right: R package for using EML metadata in analysis :mag: maelle fakepackage Fake R package for my talk at RUG Barcelona 2017-06-13 :smile_cat: maelle laads :rocket: R Package for the NASA API of MODIS Level 1 and Atmosphere data products :rocket: maelle rtimicropem :mask: R Package for the Analysis of RTI MicroPEM Output Files :mask: magalichampion GADAG GADAG algorithm mages ChainLadder Claims reserving models in R mages PSRWP A Practitioner's Introduction to Stochastic Reserving mages googleVis Interface between R and the Google Chart Tools magnuskristoffersen detzrcr An R-package for comparing detrital zircon samples magosil86 getmstatistic Quantifying Systematic Heterogeneity in Meta-Analysis magrai puttytat4R Collection of useful "helper" functions magrichard dmprocr An R package that performs differential methylation profiles clustering. magrichard dmprocrdata A set of data dedicated to the dmprocr R package. magrichard facsticor Useful package to treat and analyse FACS data during timecourse experiments magrichard h4decoder95 A method to generate error-correcting DNA barcodes magrichard testgit mahonmb FARSfun Package for looking at FARS data mahonmb PARTITION maianhdang fars Functions to summarize fatal accidents and plot the location on state maps. Data Source: US National Highway Traffic Safety Administration's Data maianhdang noaa.visualise This package working with the NOAA Significant Earthquakes dataset to clean and visualise data by timeline and leaflet maps maierhofert classiFunc maiers94 recondiss recondiss maiers94 rpatrec Visual Pattern Recognition in Time Series Data mailund admixture_graph Module for analysing admixture graphs mailund bindr Binding of function return values to variables mailund coalhmm-analysis R code for analysing and visualising CoalHMM results mailund dfdr Meta-programming R package for computing the derivative of simple functions. mailund pmatch Pattern matching DSL for R mailund ralgo Algorithms and data structures for R mailund tumour-coal Coalescence-like models of tumors majkamichal BitBayR majkamichal easyPlot A Simple Graphical User Interface for ggplot2 majkamichal naivebayes An implementation of the Naive Bayes algorithm in R maksimhorowitz nflscrapR R Package for Scraping NFL Data off their JSON API maksimhorowitz testforNBAH malamadreMx distributions malaybasu there R package to dynamically get a relative path of a specific file during Rmarkdown. malcolmbarrett confoundr An R package for working with confounders malcolmbarrett ggdag An R package for working with directed acyclic graphs (DAGs) malcolmbarrett mable malcolmbarrett mbmisc malekbs UP UP: Universal Prediction distribution for surrogate models malexan forecastbox malhamdoosh EGSEA This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. malithj gsoc-2016 Solution for the R-test malithj postCP A package to estimate posterior probabilities and perform model selection in change-point models using constrained HMM malnirav hiAnnotator Functions for annotating GRanges objects malnirav hiReadsProcessor Process LM-PCR product libraries mammmals XLmap mammykins blockbuster A model to simulate the deterioration of School buildings through time. mammykins regregrap Register of registers reproducible analytical pipeline report. mamut86 diffusion R package for forecasting with diffusion models manabusakamoto evoldiver evoldiver mananshah99 rotationforest R rotation forest module mananshah99 sentR Robust sentiment analysis extension for R mananshah99 xlsxboost A package that provides useful extensions for dealing with excel files in R manfredo89 ED2io This is a package to manage I/O for the Ecosystem Demography model (ED2). mangal-wg rmangal R interface to the mangal API for ecological networks mani2012 PathoStat The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files. manjunathprasad82 InfiNANAN.BGMP mannau boilerpipeR Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/) mannau h5 Interface to the HDF5 Library mannau step-r-check mannau tm.plugin.sentiment Retrieve structured, textual data from various web sources. mannau tm.plugin.webmining Retrieve structured, textual data from various web sources. manolofperez ABCwhitebox manoweng FuGA-ADS Fuzzy and Genetic Algorithm based Anomaly Detection System manschmi blm No description or website provided. manschmi blmr manuelbickel textility miscellaneous helper and auxiliary functions for text processing and text mining manuelreif PP Person Parameter estimation (1,2,3,4PL model) and GPCM manuelreif mcIRT R package which provides functions to fit IRT models for multiple choice items. manuelreif svyPVpack This package deals with data from survey designs including plausible values. manutamminen double_poisson manutamminen prider R package for easier primer design from multiple sequence alignments mapila81 pintamapas maplesword TOMRwModule A network module identification procedure by considering node weights. Originally designed for protein-protein network module identification by combining differential expression information of genes maplesword neuMatIdx The R package to estimate neuron maturity index, a series of scores representing maturity states of homogeneous neuronal samples (e.g. single neurons), given the gene expression information by RNA-sequencing (in FPKM). mapn DAbayes An R package for Bayesian implementation of Detection and Attribution problems mapn hello-world mapping-elections mappingelections A R package for this project maptopixel Arduino-to-Flash maptopixel WeatheR Weather Underground data wrangling R package maptopixel woer Weights of Evidence R scripts maptracker dynamictable R package to generate interactive HTML tables from matrices and data.frames marcelboldt r-exasol-dplyr Dplyr addon for the EXASOL R package marcellodo StatMatch An r package for Statistical Matching (aka Data fusion) marcellodo univOutl yet another R package for univariate outliers detection marceloreis rtrabalho Rotinas para manipulação de microdados do Ministério do Trabalho e Emprego marceloturim decryptr marcelschweiker comf Repository for the R-package comf: Functions for Thermal Comfort Research marcelschweiker comfort_R Repository for the R-package comf: Functions for Thermal Comfort Research marchdf DataProducts This is the Shiny code for the Data Products Coursera course taught by John Hopkins marchinilab dropsim R Package for Single Cell RNAseq Synthetic Data Simulation marchinilab sinsynthr R Package for Single Cell RNAseq Synthetic Data Simulation marchtaylor EwEvis Ecopath with Ecosim (EwE) visualization marchtaylor fishdynr R package of fisheries science related population dynamics models marchtaylor sinkr A collection of functions with emphasis on multivariate methods and handling of geographic datasets marcialbaptista dataUtilities marcialbaptista embrData marcianito UmbrellaEffect An R-package which enables an easy way to correct superconducting gravimeter measurements for the shielding influence of the instruments housing. marcianito gravityInf marcianito gravitySynth marcianito hygra marcianito ppso marcinjadwizyc rutils R package with various functions made for my own use. marcionicolau CNPM Embrapa CNPM Package marcionicolau ICPWheatBlast ICP Index for Wheat Blast Disease marcionicolau REmbrapaWheat Personal R Package marcionicolau RMapSubscribers Attendees Map from SCAB & BLAST Conference marcionicolau RViennaCL ViennaCL wrapper for R marcionicolau rcalheatmap R Widget for JS Cal-Heatmap marcionicolau shinyExt Shiny Extensions marcjwilliams1 neutralitytestr marcmtk MadsR an R package for handling data from the danish microbiological system MADS marcmtk Test marcoblume odds.converter Convert Sports Betting Odds marcoblume pinnacle.API R Wrapper for the Pinnacle API marcoblume pinnacle.MLB MLB data from Pinnacle marcoblume pinnacle.data Betting lines from pinnacle for data research marcoblume readcamp Read DataCamp group exports into tidy data frames marcog77 Rmacdiv marcog77 climex marcog77 divalt marcog77 marcoUtils marcog77 rrtmodavg marcog77 szn marcosci NLMR Project Homepage: marcosci artscapeR An R package to create artificial landscape and tools to modify landscapes. marcosci cividis marcosci upgrstuserv upgrstuserv is an R package to simplify the upgrade process of RStudio Server marcottelab pepliner marcpaterno artsupport R package for analysis of art framework performance data marcpaterno rgallery rgallery is an R package for reading HDF5 ntuple files marcusihsmarkit BasicSettings marcuskhl BasicSettings marcusspiegel agroEcoTradeoff Spatial tradeoff model marcusvolz ggart Tools for making art with ggplot2 marcusvolz steiner Tools for computing, analysing and visualising geometric Steiner trees and networks marcusvolz strava Create artistic visualisations with your exercise data mareframe mfdb Library for accessing MareFrame DB and generating model input files mareframe mfdbatlantis MareFrame Atlantis routines mareframe rlantis Helper tools for Atlantis mareframe vat Visualizing Atlantis Tool (vat) marfcg leos.opportunity.estimator Notification Opportunity Estimator margauxgs MyownpackageX2017 margauxwehr packageexo margotgunning powers mariafcadena FinalProject_CADENA Web Scrapping real estate information of Paris from Selonger.com mariafcadena HomeworkCADENA Creating a package mariahtaylor task_09 marianoatm PrOBS Profiling whit Orthologs by Bayes and Sinteny mariansauter sauter Useful Article Functions in R mariavica mircomb maribelacosta dief R package for computing diefficiency metrics dief@t and dief@k. marieflutre UrbanTempo Manage urban temporalities from observational data. mariev chromatoplotsgui gui front end for chromatoplots marikainhoff marikr Personal R package of Marika Inhoff marinadezordi RCPTEC marinebon infographiq R functions for creation of interactive infographics for data-driven storytelling mariobecerra utilsMBC R functions I use mariodejung myshinytestpackage mariodeng FirebrowseR An R client for broads firehose pipeline, providing TCGA data sets mariodeng simplifyR Simplifying frequently used base R functions mariodosreis fractal An R package for fractals mariodosreis phytk mariodosreis tai The tRNA adaptation index mariofajardo ospats Optimal stratification mariofajardo test_package mariolaespinosa historicalnetworks Mapping Historical Citation Networks mariope barronsCOT Get Barron's Commitments of Traders data, store and analyze mariope sta Mimetize Stock Trader's Almanac Analysis mariusbarth ezDiffusion mariusbarth shinydegs.definitions Helper functions and definitions for the project "Teaching Science in Biology Classes" mariusz11363 WindTurbine Package for the calculation of a wind turbine mariytu RegressionLibs This is an R package with different functions for use with regression models. It contains a set of useful plots using ggplot and your plots are ready for use in a scientific publication ;) marjoleinF curtail R package for creating and simulating curtailed tests marjoleinF pre an R package for deriving Prediction Rule Ensembles marjoleinF premixed preshaken nor prestirred marjoleinF swReg An R package for forward stagewise regression marjoleinF upre An R package for creating unbiased prediction rule ensembles marjoleinbruijning trackdem Particle tracking and demography mark-thompson miscR an assortment of useful R functions markajoc MBCbigP Model-based clustering for high-dimensional data markajoc condvis Visualisation for statistical models. markallenthornton dimest Dissimilarity Matrix Dimensionality Estimation markanewman AzureStorageForR Package for R that allows interaction with AzureStorage markdane MEMA MEMA Preprocessing, QA and Normalizing Functions markdr2 SISBID_session3_test markdrisser convoSPAT convoSPAT markdumke reinforceR R Package for Reinforcement Learning markdumke reinforcelearn R Package for Reinforcement Learning markdumke shinybutterfly Interactive distribution maps for butterfly sightings in Shiny. markdunning beadarray Quality Assessment, processing and analysis of Illumina microarray data markdunning beadarray-devel Developmental copy of beadarray markdunning crukCIMisc Various shortcuts for common plotting operations and colour palettes based on Cambridge University and Cancer Research Uk branding markgene gorthoR R package to access gOrtholog - an orthology database markgene helloR Hello package using RStudio markgene ppscanner markgene protein.github.io markheckmann OpenRepGrid An R package for the analysis of repertory grids markheckmann OpenRepGridGui A collection of GUIs on top of OpenRepGrid markheckmann R2PPTaddons Addons to the R2PPT package markheckmann R2wdaddons Addon to the R2wd package markheckmann circplot Draw graphical elements in circular way markheckmann convexhull drawing convex hulls and density plots markheckmann dissertation Functions used in my PhD thesis markheckmann gridsampler A simulation tool to determine the required sample size for repertory grid studies markheckmann mapster some custom functions for easy map projections markheckmann mat2tex Tools to combine R matrices and LaTeX code for use with knitr or sweave markheckmann ryouready Paket zum "R you ready?" Buch markheckmann serialmail create a series of emails from a text file template (txt) and a data file (csv, xlsx) markheckmann words create random words or sentences markhocky testthatMockr R Package to provide Mock object support to testthat unit testing. markhwhiteii biosensequality A Data Quality Report Generator for the NSSP BioSense Platform markhwhiteii mscelns A number of my miscellaneous functions that I find useful markhwhiteii processr R implementation for the PROCESS macro marklhc bootmlm R package under development markmfredrickson RItools Randomization inference tools for R markmfredrickson optmatch Functions for optimal matching in R markmfredrickson optmatchExperimental marko363 ev Package providing several functions for calculating several measures of electoral volatility and electoral disproportionality markocherrie LifecourseEpi Functions to help with lifecourse analysis, with particular focus on Edinburgh markozecevic SBDE SBDE - Differential Expression Analysis on Seven Bridges Platforms markpayneatwork RCMEMS R interface to the Copernicus Marine Environment Monitoring Service (CMEMS) markrobinsonuzh CrispRVariants markrobinsonuzh DRIMSeq Package for differential analyses using the Dirichlet Multinomial distribution markrobinsonuzh GeuvadisTranscriptExpr markrobinsonuzh PasillaTranscriptExpr No description or website provided. markrobinsonuzh benchmarkR Tools in R for benchmarking methods (generally on a genome-scale) markrobinsonuzh iCOBRA Interactive benchmarking of ranking and assignment methods marksendak MsdrCapstoneMPS marksendak constellation Time series joins to identify sequence of related events markusdumke reinforcelearn R Package for Reinforcement Learning markusdumke shinybutterfly Interactive distribution maps for butterfly sightings in Shiny. markushuff ConcentrationGame markushuff MOTReflectionAngle R-package for constructing a dataframe with simulated performance in a MOT task with varying selection probabilities. markushuff PsychHelperFunctions R-package including common helper functions for psychological data analysis markusneumann PLSC404 For demonstrative purposes only markvanderloo hashr Quicly compute hash values for R objects markvanderloo rspa An R package for optimal record adjustment markvanderloo settings An Option Manager for R markvanderloo stringdist String distance functions for R markvdwiel GRridge R package for better prediction by use of co-data: Adaptive group-regularized ridge regression markvdwiel ShrinkBayes R package for differential expression: sequencing counts (RNAseq), microarrays, and HTRNAi markvregel STPtrajectories R package for handling Space-Time Prism(STP) trajectories markwestcott34 stargazer-booktabs markwh A0est markwh bamr Bayesian AMHG + Manning estimation using R markwh condSample markwh conditionalSample compute conditional quantiles and random samples from model objects markwh envirofacts Functions for accessing EPA envirofacts APIs. markwh markplots markwh markstats Miscellaneous statistical functions, written in R markwh markwrites Utility functions for writing--blog posts, wiki pages, academic output markwh rcmodel R package for calibrating, validating, and generally using rating-curve models for riverine mass loads markwh regsgov Functions to access the Regulations.gov API markwh streamstats R functions to access USGS Streamstats API markwh swotData markwh todoList Simple todo lists, implemented in R using reference classes markwh wqp marsha5813 botcheck Makes a call to the Botometer API in R to obtain the probability that a specified Twitter handle is a bot. marshallpku penSimTools martabc pointvis pointvis package for R martahidalgo hipathia Hipathia is a package for Signaling pathway analysis and Signaling pathway functional analysis. martahidalgo hpAnnot Package containing example and annotation data for Hipathia package. Hipathia depends on this package to be functional. martakarass hwP martakarass mpeer martigso stortingAlpha Automated vote handling from text files on the Norwegian parliament (Stortinget) martigso tonR This package provides tools for processing data in the from the Talk of Norway CoNLL data format. martin-vasilev paraFix Automatic pre-processing and vertical re-alignment of paragraph reading fixations martin-vasilev paraFix_old martin3141 fmriqa An R package for fMRI quality assurance martin3141 spant Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. martinEcarnot signe martinbel rinfluxdb Minimilastic influxDB client for R martinboer MMBsplines A fast Mixed Model B-splines algorithm martinbryan SUMMER Spatio-temporal Under-five Mortality Model Estimation in R martinbryan WSC Helpful R commands for the Wallingford Senior Center martinchevalier gustave Gustave: a User-oriented Statistical Toolkit for Analytical Variance Estimation martinctc textworks Save time working with survey and text data martindurocher emdCwa martindurocher floodRFA martindurocher pprRFA R package providing basic functionality tu use projection pursuit regression in regional frequency analysis martingale Rmatriksdata Official repository of the R package Rmatriksdata. martingerdin owltown martinjamescox acoustic martinjhnhadley OxfordIDN_Shiny-and-Data-Repositories martinjhnhadley gene.alignment.tables gene.alignment.tables martinjhnhadley oidnChaRts A collection of functions for building generic interactive htmlwidget visualisations. A complementary guide to htmlwidgets is developed here: martinjhnhadley rstattoys martinjhnhadley statesRcontiguous Shapefiles For The Contiguous United States of America (using https://www.census.gov/geo/maps-data/data/cbf/cbf_state.html) martinjreed reedgraph martinjuju pamm martinkabe RSQLS Package for interactive work with SQL Server martinkabe RSQLS_package Package for interactive work with SQL Server martinoandrea92 dpdistance martinpastoors mptools martinzuba mzgoeg martisak CodeR An R package to generate a list of codewords martj42 throner R wrapper for Throne.ai API maryclare EBRR maryclare LANOVA maryclare expowreg maryclare feasRDS maryclare gnorm Little package for working with the generalized normal distribution maryclare multiprior maryclare powopt Little R package for performing penalized regression using power/bridge penalties, implements algorithm given by Marjanovic and Solo (2014) and includes lasso as a special case maryclare scalesign marziacremona IWTomics R package IWTomics: Interval-Wise Testing for Omics Data masabri01 BuildingRPackagesCoursera Assignment for Coursera Building R Packages masalmon RTImicropem 😷 R Package for the Reproducible Analysis of RTI MicroPEM Output Files 😷 masalmon Ropenaq R package for the openaq API masalmon ammon 😷 R Package for the Reproducible Analysis of RTI MicroPEM Output Files 😷 masalmon convertagd 🏃 R package for converting .agd files from Actigraph into data.frames 🚴 masalmon eml.tools Helper functions we'll need in CHAI for using metadata, in particular of the questionnaire masalmon geoparser 📖 🌐 R package for the Geoparser.io API 🌐 📖 masalmon laads 🚀 R Package for the NASA API of MODIS Level 1 and Atmosphere data products 🚀 masalmon monkeylearn 🐒 R package for text analysis with Monkeylearn 🐒 masalmon opencage R package for the OpenCage API -- both forward and reverse geocoding masalmon riem R package for accessing ASOS data via the Iowa Environment Mesonet masalmon ropenaq R package for the openaq API masalmon rtimicropem :mask: R Package for the Reproducible Analysis of RTI MicroPEM Output Files :mask: masalmon usaqmindia 😷 Data from the U.S. Embassy and Consulate air quality monitors in India 😷 masalmon watchme :camera: R package that supports the analysis of images annotations :camera: masato-ogishi GramStainR Automatic classification of digital Gram stain images masato-ogishi PAAQD2 PAAQD2 masato-ogishi Repitope Epitope prediction via repertoire-wide TCR-peptide contact profiles masato-ogishi plotUtility Plot utilities masedki ClustOrd clustering ordinal data with dependency. masedki MHBinaryModelSelection masedki MHTrajectoryR Bayesian model selection in logistic regression for the detection of adverse drug reactions masedki SelvarMix masedki amisbanana This package provides Adaptive Multiple Importance Sampling schemes masedki selvarlik mashranga MethAnalysis Different Analysis on DNA Methylation data mashranga MethPed Pediatric brain tumors classifier based on DNA methylation data. Package homepage:https://bioconductor.org/packages/MethPed masko-p DIFlasso masonhinckley Momentum masonhinckley Projections2017 masonhinckley middApril Setting up R Package massimoaria bibliometrix A R tool for quantitative research in scientometrics and bibliometrics. massmutual mmlib A collection of reusable R functions for MassMutual Data Science team massmutual mmviz masspastore ADati Pacchetto ADati masterSplinterIO chi2fisher mastoffel GCalignR Simple peak alignment for gas-chromatography data in R mastoffel abcsimR mastoffel inbreedR R package for analysing inbreeding based on SNP and microsatellite data mastoffel minmodelr package with some personalized functions mastoffel partR2 mastoffel rptR R package for repeatability estimation for Gaussian and non-Gaussian data mastoffel sealABC tools for the pinniped demography analysis mastropi bwt mastropi dmtools R package: Data Mining Tools mastropi envnames R package: Track environment names mat3us2 testrepo matdoering openPrimeR An R Package for Multiplex PCR Primer Design and Analysis matdoering openPrimeRui A Shiny Application for the openPrimeR R Package mategarb RROSETTA RROSETTA mateusz1981 sver_for functions and models used in swedish forestry mateusz1981 sverfor functions and models used in swedish forestry matgug shippeoR math511-fall2016 test-assignment-wahalulu mathematica-mpr edtechrce Functions to support edtechrce statistical tools API mathematicalcoffee simplecitr Rstudio addin to autocomplete citekeys from a bibfile. mathesong granviller Personal R package of functions I find useful. mathesong kinfitr kinfitr: PET Kinetic Modelling Using R mathesong kipettools R Tools For KI PET Group Files matheusbarroso dboot dependent bootstrap mathieu-lemire bcClass mathieu-lemire celluloid_0.10 superseded mathieu-lemire celluloid_0.11 CELLULOID: tumour cellularity and ploidy tool mathieu-lemire copynumber38 R package copynumber modified to allow for hg38 mathieu-lemire cosmicSigNNLS mathieu-lemire cosmicSignnls Decomposition of mutational signatures by means of NNLS mathieu-lemire pancdb mathieubray mathieuR Personal sample package with handy functions used by me mathieucarmassi CaliCo Package on code calibration mathieucarmassi calibrationcode Package on code calibration mathijsdeen ClusterBootstrap Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap mathildelavacquery mlpackage package with all functions created before - Assignment mathphysmx bernstein Bernstein-Bezier functions mathphysmx cleanTable Utilities to clean data in the form of tables or spreadsheets mathphysmx empiricalDistribution An R package to compute several forms of the univariate empirical distribution functions (plotting positions) and the empirical bivariate distribution function, the empirical copula included mathphysmx gmshR An R package to export geometric elements to .geo gmsh files mathphysmx inverseFunction An R package to compute the numerical inverse of a univariate function mathphysmx percolation An R package for Continuum percolation analysis of Poisson sticks mathurshikhar HPC Comparing Rcpp vs R by computing Gibbs' Sampling mathurshikhar visualisation Visualisation of predicted Forest Cover Type using Shiny mathwild mathilde_package mathykathy26 kagRfun Personal R Functions matiasb biOps Image processing and analysis for R. maticaputti dummyfunctions Dummy functions to improve your dataset analysis matloff Rdsm matloff Rth matloff ShinyImage Imaging package, with an emphasis on recording history of changes. matloff SmoothImage matloff cdparcoord Frequency-based parallel coordinates plots for categorical and discrete data. matloff cmdlinetools Handy tools to make like easier and more fun with the R command line! matloff des Discrete-Event Simulation in R matloff freqparcoord.cd Frequency-based parallel coordinates plots for categorical and discrete data. matloff partools Tools to aid coding in the R 'parallel' package. matloff rcurses Access to the Unix 'curses' library from R. matloff rectools matloff regtools Various tools for linear, nonlinear and nonparametric regression. matloff revisit matsengrp sumrep Summary statistics for repertoires matsukik RTsurvival A set of R functions to perform survival analysis on reaction time (RT) data matsukik grt Functions to generate and analyse data for psychology experiments based on the General Recognition Theory. matsukik mrsat analysis tools for multi-response speed accuracy trade-off studies matsukik read.dmdx A set of functions to read DXDM-related files in R matt-jay rjaytools matt-sutton sgspls A sparse group-subgorup Partial Least Squares package mattdelhey mdutils [r package] utility functions mattdneal FAIMSToolkit Toolkit for handling FAIMS data mattdneal GPLVM mattdneal IVM Informative Vector Machine for Sparse Gaussian Processes mattdneal cacheMan In-memory cache manager for R mattdneal gaussianProcess mattdneal longJobUtils R Utilities for long running jobs mattdwebb wildclusterboot matteocereda ceredaR matteodefelice eneaR Climate lab support functions matteodefelice panas Reduce the phriction when working with maps & time-series matteopelagatti pathmod R package "pathmod" matteoprovenzano kriens-r R package which provides basic functions for Continuation-Passing Style development. matthew-phelps CholeraDataDK R package for CPH cholera epidemic 1853 data matthew-phelps KBH1 matthew-phelps grouping matthewclegg egcm Engle-Granger cointegration models in R matthewclegg partialAR R package for fitting the partially autoregressive model matthewclegg partialCI R package for fitting the partially cointegrated model matthewcurrier Matchezr matthewcurrier RFInt matthewcurrier UninsuredByZip matthewcurrier analyzemedia matthewcurrier bizler matthewcurrier matthewcurrier.github.io matthewcurrier mattsforecaster matthewcurrier mattstemplates rmarkdown templates matthewcurrier miscmatt matthewcurrier presentation matthewcurrier xtsmatt Contains a series of functions for calculating period over period (e.g., month-over-month) on xts objects. matthewgthomas dplacer R interface to D-Place matthewgthomas rdplace R interface to D-Place matthewjay15 generalhoslem Functions to assess the goodness of fit of binary, multinomial and ordinal logistic models. Included are the Hosmer-Lemeshow tests (binary, multinomial and ordinal) and the Lipsitz and Pulkstenis-Robinson tests (ordinal). matthewjay15 generalhoslem-v1.1.0 matthewjdenny CCAS A Statistical Model for Communication Networks matthewjdenny ContentStructure An R package which implements an extension to the TPME model of Krafft et al. (2012) matthewjdenny GERGM An R package to estimate Generalized Exponential Random Graph Models matthewjdenny New_Readings matthewjdenny REmail R package for Email Data Processing matthewjdenny SpeedReader High Performance Text Processing in R matthewjdenny WIN_2015_Submission matthewjdenny preText An R package to assess the effects of text preprocessing decisions. matthewjdenny preptest An R package to asses the effects of text preprocessing decisions. matthewkling colormap R package for 2d and 3d color legends matthewkling ecoclim R package with tools for manipulating and visualizing climate data matthewkling flowR Gene flow data manipulation for R matthewwolak ICC R package to assist in the estimation of the Intraclass Correlation Coefficient (ICC). matthewwolak nadiv R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model'). matthewwolak wolakR R package with a random assortment of R functions and data that I often use matthhan rsubspaceMOA An interface to 'subspaceMOA', a Framework for the Evaluation of subspace stream clustering algorithms. (see for more information.) matthias-da robCompositions Robust Methods for Compositional Data matthiasheinig eQTLpipeline Toolset to perform eQTL analysis on HPC systems matthiasheinig seqQTL Toolset for preprocessing sequencing based traits for QTL analysis matthiaskaeding Kaeding matthiasspeidel Test matthiasspeidel hmi Hierarchical Multiple Imputation matthieu-foucault RdeveloperTurnover matthieu-haudiquet rothSGA matthieugomez statar R package for data manipulation — inspired by Stata matthuska tRap R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences mattia6690 Mfunctions mattiaciollaro MeanShift R package to perform clustering of vector data and functional data using the mean shift algorithm mattjcamp coderr A super-simple SQL code generator mattjcamp cohortr Tidyverse like grammer and verbs just for educational cohorts mattjcamp datapointsr Painless QC analysis for big statistical tables mattjcamp dbr Quick functions and common interfaces for SQL Server, Amazon Redshift and SQLite databases mattjcamp loadcheckr Compare rows, data types and content in two tables in two data connections mattjcamp wicher School enrollment forecasts from The Western Interstate Commission for Higher Education mattjtuttle task_09 mattkcole FAtools R package for factor analysis visualization mattkcole lamaR mattkcole mc2Rd Personal R package with some very unclean functions / objects used for thesis work. mattkcole shinyaudio Audio Tracking Shiny Integration mattmalin Rface face.com API calls from R. mattmills49 CFBWinProbability Package for creating and testing a College Football Win Probability Model mattmills49 MELLS Multilevel Expected points added Linear Least Squares mattmills49 helpers mattmills49 modeler R Package for Exploratory Data Analysis mattocci27 LeafArea An interface for the image processing program ImageJ, which allows a rapid digital image analysis for particle sizes. mattocci27 mglmn Tools for univariate and multivariate generalized linear models with model averaging and null model technique. mattphan Age-Adjusted-Death-Rates USDeathChoropleths: An R Package mattphan Testing mattsigal SimDisplay R package for the visualization of Monte Carlo Simulation results. mattsigal careless Metrics for Identifying Careless Responding mattsigal mmisc Matt's Miscellaneous Functions for Psychometrics at MHS mattsigal psyc6130 Functions, data sets, and help files for PSYC6130 Univariate Statistics class at York University. mattwatts marxanui marxanui: An R package with Marxan user interfaces for Windows, Mac and Linux. You can import your datasets, run Marxan, edit parameters, run parameter tests, and visualise output maps, figures, and tables. The user interfaces are derived from marxan.io web apps. mattwloftis agendacodeR agendacodeR mattzheng colorfulR wordcloud Extended application for R! matwey Rfringe matzhaugen maf matzuc fishindexr maupson gapAPI R package for accessing the GAP API mauriciogtec metodosMultivariados2017 Página del curso de Métodos Multivariados y Datos Categóricos 2017 mauriciogtec minHomVoting mauriziopaul treatmentResponseDiallel Package For the Analysis of Treatment-Response Phenotypes in the Influenza Diallel Paper mauro-idsia r.blip R interface for BLiP (Bayesian Learning Package) maurolepore coral Data and functions of the coral project of the O'Dea lab. maurolepore handy maurolepore jobs maurolepore paletter Extract the colour palette from an image. maurolepore testme Test submission for the position of R package developer for CTFS maurolepore try maverickg cxxfunplus an extension to cxxfunction in R package inline max-graham metrics Useful metrics for data science max-sokolov fmreg Fama-MacBeth Regression maxbiostat timeTreeSim small R wrapper for using BEAST to simulate time-calibrated phylogenies maxbox51 ProjDecomp Projective Decomposition of a 2D Real matrix. maxbox51 ProjDecompS4 Woot is a test repository. maxconway FluxBalanceAnalyzeR maxconway aRrr aRrr be an R package t' honour Talk Like a Pirate Day! maxconway fbar A simple, easy to use Flux Balance Analysis package with a tidy data approach maxconway gsheet Download Google Sheets to R maxconway metabex Metabolic Model Explorer maxcorbin lookrlite A lightweight, DIY alternative for interfacing with Looker's API. maxcorbin sentiment-generation maxdschneider golmtutorial 2 Aug 2017. R Packages Tutorial at Uni Potsdam maxfacundojaeger rfmfunction calculate rfm score with RFMfunction() maxgav13 GMisc GMisc maxgrossman waveyR collection of R functions of no particular domain that I made. Surfing is great, so I rightfully put wave in the title. maxheld83 pensieve R package for the scientific study of human subjectivity. Also, corresponding book. maxheld83 pensieveR R package for the scientific study of human subjectivity. maxkroeschel activitytools Tools to analyse animal activity data in R maxsommerfeld cope Compute and plot CoPE sets maxto quantR Quantitative and Machine Learning Methods for Portfolio Analysis maxto ubiqueR Quantitative and Machine Learning Methods for Portfolio and Risk Analytics maxwell8888 descriptiontest maxwell8888 rstudiodemo maxwell8888 testpackrat maxwellh0ng PsyCu mayapendleton RWorld1 mayenok eyelinesOnline online eeg classification for eyelines with Resonance mayenok hybridEyeEEG mayer79 missRanger R package "missRanger" for fast imputation of missing values by random forests. mayrandy JMboost Boosting joint models for longitudinal and time-to-event outcomes mazphilip AdditiveCausalExpansion This is a package for a varying-coefficient regression with Gaussian process priors on the varying coefficients. The coefficient functions are dependent on the confounders. The linear elements are the basis expansion of the treatment variable, allowing for causal inference for continuous variables. mazphilip CausalStump This package fits a Gaussian process to causal inference observational data. It is part of my MSc project in Computational Statistics and Machine Learning at UCL in London 2016/17. mazphilip CausalStumps This is a Gaussian process method for causal inference for my MSc project in Computational Statistics and Machine Learning at UCL in London 2016/17. mazphilip GPspline Package for a varying-coefficients spline regression with GP-regularization of the spline coefficients using a separate set of covariates mb-eco EOmove mb-eco trix calculate trophic status index in R mbaaske qle Simulation-Based Quasi-Likelihood Estimation mbadge AnalysisToolkitR mbadge MyUtilsR R universal utility functions mbadge vizR mbannert dropR drop out analysis with R and shiny mbannert gateveys An R Toolbox for Business Tendency Survey Researchers mbannert gateveys2 mbannert minimalpkg A minimal R package example mbannert miro Meta Information for R Objects mbannert panelaggregation R Package to aggregate Panel Data mbannert pgsqltsmap An R package to map oo based time series to a postgreSQL database mbannert sqlwzrd SQL Wizard - Using R to create SQL code mbannert timeseriesdb R package to store and organize time series in a simple but powerful relational database using PostgreSQL mbannert tstools A time series toolbox for official statistics mbask RBSperformance R package to aid in assessing performance of Randomized Branch Sampling mbask efreadr Read European Fluxes CSV Files mbask forestry Tools for common forestry related analyses mbask frank Watch mbask meteopv An R package to assess daily efficiency of photovoltaic panels mbask pluviometer R package to get precipitation readings from a home-made pluviometer mbask treecm A R package to compute centre of mass of trees mbask treeglia A R package to perform stem analysis from tree-rings measures mbcann01 dataclean Helps Speed Up Data Cleaning mbcann01 descriptivetables Functions for Creating Descriptive Tables mbcann01 detectPilotTest Analysis of the DETECT pilot test. mbcann01 performance Tools for evaluating model performace and diagnostic tests. This package was originally created to help with the development and evaluation of screening tools. mbcann01 sandbox My sandbox for testing things out. mbeccuti PGS mbeccuti Prova mbedward cermbTools A collection of R functions used by Centre for Environmental Risk Management of Bushfires, University of Wollongong mbedward packcircles R package for random circle packing mbedward walkies R package for random walks mbeigel OrientExpress Interact with OrientDB using R and igraph mbeigel OrientExpress-old Interface for OrientDB mbeigel hackeRnews An R wrapper for public near real time data API mbelmadani forestDNM-archive forestDNM: de novo SNV discovery with Random Forests (archive for personal use). mbergins BerginskiRMisc Miscellaneous R Functions of General Use in Plotting and Manipulating Data mbertalan iPsychCNV Method for copy number variation detection for dried blood spots. mbertolacci bomdata mbertolacci climatedata mbich combinatorics An implementation algorithm of discrete optimization mbiggins12 else_foo A package to eliminate the need for tedious if, else if, else statements in Rstudio. mbiggins12 write_mult A package to eliminate the need for tedious if, else if, else statements in Rstudio. mbjoseph bbr R package to scrape data from basketball-reference.com mbojan adr mbojan alluvial Alluvial diagrams mbojan clipboard R package for portable writing/reading to/from system clipboard mbojan d3net Shiny application for interactive network data visualization and exploration mbojan dataenc mbojan db6 mbojan describe mbojan devlibrary Managing R library tree with versioned packages mbojan fschecklists mbojan intergraph R package for converting network data objects between different classes mbojan isnar mbojan linkprediction Link prediction mbojan lspline R package: Linear Splines with Convenient Parametrisations mbojan maddins Michal's RStudio addins mbojan mapoland mbojan maxqdar Interfacing MAXQDA's exchange files mbojan mbtools Chaotic Collection of Functions and Datasets Possibly Useful Also to Others mbojan mouter R package with a (slight) generalization of outer() mbojan pkgnet Network of R packages mbojan recode Yet another way to recode variables mbojan recon mbojan rgraph6 Representing undirected graphs in graph6 format mbojan secenv mbojan trac2gh Moving stuff from Trac+SVN to GitHub mbonoli WindResource mbonoli WindResource_data mbonoli fmb mbonoli funcionesMBO mbootwalla MethylHose Downstream processing of Illumina 450k Methylation data mbq Boruta Boruta R package mbq praznik Collection of information-based feature selection filters mbq rFerns Random ferns for R mbq rethinker RethinkDB driver for R mbrueckner AHR Estimation and Testing of Average Hazard Ratios mbrueckner permGS Permutational group-sequential tests for time-to-event data based on the log-rank test statistic. mbsabath dumbtestr Test R package repository mbtyers MTfuncs Some functions I wanted to use again mbtyers jagsplot mbtyers rasterblaster Slick tricks for geostatistics mbtyers recapr Estimating, Testing, and Simulating Abundance in a Mark-Recapture mbtyers riverdist River Network Distance Computation and Applications mbyvcm MRCIEUGTEx Functions for the analysis of risk scores in GTEX data mc30 wasp Package for wavelet analysis of disease case series. mcallaghan scimetrix Some Scientometric and Topic Modelling tools mcanouil IMA2 Illumina Methylation Analyzer 2 for ILLUMINA 450k HumanMethylation Beadchip mcanouil ggFunctions Some ggplot2 functions: manhanttan, qqplot, ... mcanouil myScriptsMickael My personnal scripts (utils) mcanouil snpEnrichment Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal) mcbeem ZPDGrowthTrajectories R Package for creating and exploring synthetic growth trajectories based on a quantitative implementation of Vygotsky's Zone of Proximal Development. mcbeem plotBayes R package for exploring Bayesian inference for the mean of a continuous distribution mccallm frma mccallm frmaTools mccallm miRcomp mccallm miRcomp-shiny mccallm spkTools mccallm ternarynet mccartqm proms mccreigh EOF EOF analysis for climate data in R. mccreigh rwrfhydro A community-contributed tool box for managing, analyzing, and visualizing WRF Hydro (and HydroDART) input and output files in R. mccreigh waveprac Practical Guide to Wavelet Analysis for R mccurdyc mrstudyr A tool for retrospectively studying mutant reduction strategies in an attempt to reduce the cost of mutation testing. mccurdyc mrstudyr2 mccurdyc testrr R & R testing mcdelaney packMatt mcefalu madr Model Averaged Double Robust Estimation mcefalu yummy-octo-broccoli mcf-rocha iplan An efficiency-oriented release planning tool based on tangible and intangible benefits for a portfolio of agile software development projects. mcfanda StatWriter R package to help writing reproducible research mcfanda gamlj GAMLj: GLM, Mixed and Generalized models for Jamovi mcfanda gamlj_glm GAMLj suite for Jamovi - GLM module mcfanda gamlj_mixed GAMLj suite for Jamovi - Mixed Model mcfanda jamovi_glm General LInear Model module for jamovi mcfanda jamovi_mixed mchiapello InteRamf a friendly graphical user interface for Ramf package mchiapello Ramf mchig cohortMoip mchig hubspotAPI mcieslik-mctp codac Comprehensive Detection and Analysis of Chimeras mckaylab TSPmap mckennapsean scorrplot interactive scatterplot for visually exploring pairwise correlation mcl868 HelpPackage mcl868 PhdProjectFirst mcl868 TicTacToe mclark-- lazerhawk An R package of miscellaneous functions. mclements ROpenModelica R package to script OpenModelica mclements maft Accelerated failure time models for nuclear families mclements magree R package for the O'Connell-Dobson-Schouten estimators of multiobserver agreement mclements microsimulation R package for microsimulation mclements numdelta R library for the delta method with numerical derivatives mclements psp R package for paired screen-positive designs mclements purged R package for purged Markov chains for smoking reconstruction mclements rstpm2 An R package for generalised survival models mcmventura rgeoname A package for the quality control of meteorological stations location mcneilco racas mcneney logistlogF mcol nestfs Cross-validated (nested) forward selection mcomas coda.base A Basic Set of Functions for Compositional Data Analysis mcomas mixpack mixpack: a package for mixture components analysis mcomas normalmultinomial mcomas rnova mcomas usrgi.lib mcrucifix Insol R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78, BER90 and LA04. Computes daily-mean, season-averaged and annual means for all latitudes. mcrucifix gp mcrucifix iceages Companion package to paper 'Why ice ages could be unpredictable' published in "Climate of the Past" http://www.clim-past.net/9/2253/2013/ mcrucifix palinsol R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78, BER90 and LA04. Computes daily-mean, season-averaged and annual means for all latitudes. mcrucifix pleistocene R package with Pleistocene daat mctp cnatools Tools for detection of somatic and germline copy number aberrations from targeted next-generation sequencing data mctp codac Comprehensive Detection and Analysis of Chimeras mctp p.arc probabilistic recurrent chromosomal aberrations mculbert ProbApps Interactive simulations to explore probability and statistics concepts mcvaneede Rsge Continuation of the Rsge package for R created by Dan Bode. md0u80c9 TherapyActivity Testing therapy graphing stuff mdancho84 tidyquant tidyquant: Bringing Financial Analysis to the tidyverse mdavis29 Rcode mdavis29 credibilityInpactCode catagorical encoding using multi level models mdavis29 fpTools R package of tools for dealing with fiscal periods and time series mdavis29 keys_and_strings An R package to recode factors levels and manupulate strings mdavis29 modelToolKit mdavis29 stockFunctions R package for dealing xts time series and stock quotes mdbrown AIPWmeasures Estimate measures of predictive accuracy using augmented inverse probability weights for two-phase biomarker validation studies mdbrown DecisionCurve R package to plot decision curves mdbrown TreatmentSelection a suite of descriptive and inferential methods designed to evaluate individual treatment selection markers mdbrown partlyconditional R package to fit partly conditional Cox and logistic models mdbrown survAccuracyMeasures estimate accuracy measures for risk prediction markers from survival data mdbrown survAccuracyMeasures_devel mdbrown survCompetingRisk evaluate the prognostic accuracy of a marker with multiple competing risk events mdbrown survMarkerTwoPhase Evaluate the prognostic accuracy of a marker under two phase designs. mdbrown survNRI calculate the net reclassification index (NRI) for survival data mdbrown survRpackages Prospective bio-marker validation with survival data mdecorde RSvgDevice A lightweight svg graphics device for R mdelcorvo earthquaker earthquaker - An R package for NOAA earthquake visualization mdelcorvo farsr R package for "Building R Packages" course mdelhey bmar [r package] bayesian model averaging for l1-regularized ggm's mdelhey mdutils [r package] utility functions mdelhey plda [r package] poisson discriminant analysis mdelhey stat622 code for stat622: bayesian data analysis mdelhey svar [r package] sparse vector autoregression model mdenwood bayescount mdfortune simGWAS Simulating the expected output from a GWAS with a given causal model. mdhuilee NFLvegas This is a R repo to extract vegas lines from NFL matches mdijkstracpb james Fast and Easy Data Management in Memory and on Disk. mdijkstracpb tsview mdilorenzo aidtools This package contains assorted functions for working with AidData's financial and geocoded data. mdjbru-R-packages aprofW A light wrapper on top of aprof, the Amdahl's profiler for R by Marco Visser mdjbru-R-packages plate96 Small set of functions useful when handling 96-well plates in the biology lab mdjbru-R-packages thermPerf Model fitting on thermal performance curve data mdjlynch riva mdkarcher phylodyn mdlee12 cbindtest Minimal package for testing of variations of S3 methods mdlee12 sabr A package to query and calculate MLB offensive performance statistics mdlincoln PastecR Wrapper for the Pastec Image Search and Recognition Engine API mdlincoln bootr bootstrapping with dyplyr with a lot of assumptions built in mdlincoln clipr R functions for reading and writing from the system clipboard mdlincoln dateSampler Generate randomized dates within separately-specified ranges of years, months, and days. mdlincoln dfname Pipe-friendly functions to name and unname data.frames mdlincoln docr Build and validate data documentation for R packages mdlincoln docthis RStudio addin to create skeleton documentation for functions and data.frames mdlincoln dutchtabletops mdlincoln dutchtabletops_data mdlincoln europop Historical Populations of European Cities, 1500-1800 mdlincoln forestry Interactively Explore randomForest Models mdlincoln fugger Preview Plots When Printed On Poor Hardware mdlincoln fuzzr Fuzz-Test R Functions mdlincoln hypothesisr Wrapper for the Hypothes.is API mdlincoln londonauctions Data and processing scripts for Matthew Lincoln and Abram Fox, "The Temporal Dimensions of the London Art Auction, 1780-1835", British Art Studies no. 4, (Fall 2016) mdlincoln lumberjack Interactively Explore randomForest Models mdlincoln mlincolnutils Small utility R functions that I use every day. mdlincoln modeltests Simple methods for testing predictive model output mdlincoln multiplot Multiplot function for ggplot2 mdlincoln palladio_workshop mdlincoln projectoR Function to project a bipartite edgelist into a unipartite one mdlincoln suggestr API wrapper for the Getty Vocabularies autosuggest service mdlincoln ulanr Reconcile artist names to the Getty Union List of Artist Names mdlincoln ulanrdata Data for the string-distance implementation of ulanr mdlincoln ulanrdb Container for the Local Database Constructed By ulanr mdlincoln variety Probability-, logarithm-, and rank-based measures for diversity mdonoghoe addreg addreg: Additive Regression for Discrete Data mdonoghoe logbin logbin: Relative Risk Regression Using the Log-Binomial Model mdozmorov MDmisc MD miscellaneous functions mdragunski inteRsense R package for my BA thesis: "Geostatistical methods for the openSenseMap-platform" mdriver3 AntBite An R program for analyzing FlexiForce output data files mdscheuerell ASSESSOR ASSESSOR is an age-structured state-space stock-recruit model for Pacific salmon. mdscheuerell muti muti mdsol RMauthClient mdsumner CMIP5files browseables for CMIP5 mdsumner INLA copy of http://www.r-inla.org/download mdsumner RGDALSQL DBI GDAL mdsumner ResBaz2017 great progress mdsumner abject Doomed raadtools experiment mdsumner affinething mdsumner anal spelling conventions mdsumner anc tiny minimal dumb Rcpp NetCDF package mdsumner angstroms ROMS tools in R mdsumner asosi Obtain Antarctic and Southern Ocean Sea Ice imagery from the BOM mdsumner bomage mdsumner brwsrchk Does R CMD check warn / error on browser() calls? mdsumner bsam No description or website provided. mdsumner cartogony globes and maps in R mdsumner cconvention The CCAMLR convention in spatial form, from scratch mdsumner cgeom learning computational geometry mdsumner country Just tonnes of plots of interesting polygons mdsumner cptcity R package for http://soliton.vm.bytemark.co.uk/pub/cpt-city/ mdsumner crunchy netcdf, all the things mdsumner distancetocoast distance to coast, for some definition of "distance", "to", and "coast" mdsumner dplyrodbc Examples of applying dplyr to ODBC sources mdsumner earclip.rgl Ear clipping, from rgl mdsumner ffraster treat ff arrays as raster objects, and vice versa mdsumner finddata seek and find in the CRANcosystem mdsumner flatland mdsumner gdal.rhub mdsumner gdalextract Work in progress fix tiled extract for R raster mdsumner getwidit mdsumner ggpolypath Polygons with holes for ggplot2 mdsumner gibble mdsumner graticule Create graticule objects mdsumner gris dplyr gris mdsumner gv mdsumner hdf4.rhub mdsumner hdf5.rhub mdsumner ketchup mdsumner manifoldr R resources for Manifold users mdsumner mdsutils Miscellaneous R tools mdsumner nchelper NetCDF variables as R arrays mdsumner ncload Load NetCDF data into R mdsumner nf something or other mdsumner oddhack Ad hoc vignettes mdsumner oms putting the R in mdsumner orsifronts Orsi fronts of the Southern Ocean mdsumner ozmaps Australian maps mdsumner package mdsumner pfft Polygon finder for triangles mdsumner picayune spelling conventions mdsumner polyggon The hole story. mdsumner quadmesh mdsumner qwad General raster grids mdsumner raadins mdsumner raatams AATAMS track data for R from IMOS mdsumner rancid R And NetCDF Interface Development mdsumner raodn get stuff from IMOS/AODN in R mdsumner rastermesh No description or website provided. mdsumner rbgm R tools for Box Geometry model files mdsumner repomania Replaced by AustralianAntarcticDataCentre/raadsync mdsumner reproj Reproject with proj4, in progress mdsumner rglmin minimal rgl import for travis mdsumner rkea mdsumner roc Ocean colour with R mdsumner rplanetos just a placeholder for later mdsumner rv2 mdsumner sc General spatial normal form mdsumner scdb back-end for sc mdsumner scgraph mdsumner scicosa mdsumner scraster mdsumner scrgl mdsumner scsf Common-form data structure for simple features mdsumner scspatstat mdsumner sctrip trip reboot mdsumner sf.autotest mdsumner sfraster mdsumner spbabel Many voices for Spatial. mdsumner spdplyr Data Manipulation Verbs for Spatial Classes mdsumner spex Spatial extent tools mdsumner splat splat to replace SGAT::Pimage mdsumner tabularaster Tidy approaches with raster. mdsumner tasmapr http://rpubs.com/cyclemumner/283273 mdsumner tidyraster Tidy approaches with raster. mdsumner tissot Create and plot the Tissot Indicatrix mdsumner trip trip package development mdsumner tripEstimation tripEstimation maintenance mdsumner tropo mdsumner unjoin Unjoin data frames mdsumner vegie Ugh! Some sense for massive stupid shapefiles. mdsumner wkt R needs fast wkt parsing mdtrinh vietnamdata Data and Empirical Tools for Quantitative Social Science Research on Vietnam mdurande familynblast NBLAST to identify neuron families and subfamilies mdusilva SPICA mdzeig errorstat error statistics in mcmc simulations mdziekon eiti-alhe-firefly Firefly Algorithm implemented in R mebaran rsalesforce R bindings to query Salesforce database mebaran witr Wit.AI R SDK meca7653 QRRT QRRT Package medermand C3 medermand JobApp medermand Meder R script medewitt datademon meekj libpcapR R interface to libpcap packet capture files meekj netblockr Lookup IPv4 addresses in table of netblocks with variable size masks megahf megahhomework R Homework 2 (Creating packages) megahf spamfilter Spam filter for R assignment megan-dickson TimePackage R package project_MeganGatesJudy meganshowalter R101 meghanallen DSCI_524_2017W2_R Example project created by Andrew Lim (https://github.com/AndrewLim1990) of the 2016/2017 MDS cohort. meghapadi ALPACA a method to compare two networks and find changes in modular structure mehdirifai Data-Science mehdirifai TDC mehmetgultas metaplotr Creates plots for meta-analyses mehrankr AbHAC Aberration Hub Analysis for Cancer mehrankr KeggPA Kegg database overrepresentation analysis by Fisher's exact test mehrankr TCGA-KIRC-2015 mehrnoushmalek flowDensity Automated gating meireles evolspec meireles fia meirelesff fmeireles My personal R package meirelesff genderBR Predict gender from Brazilian first names meirelesff rScielo An R package to scrape meta-data from scientific articles hosted on Scielo meirelesff tese melcrow testpackage melcrow testproj another test repo using RStudio melff memisc Tools for Managing Survey Data and Creating Tables of Estimates and Data Summaries melff munfold An R package which provides Schoeneman's algorithm for metric multidimensional unfolding and Procrustes rotation of unfolding results. melicaraballo Rprogramming melindahiggins2000 N741pkg N741 Package of R code and templates for course melissalever mdp melsiddieg cellbaseR An R client for CellBase, the OpenCB project melsiddieg celltest melsiddieg epigenoviz mendivilg electrochem mengchen18 mogsa mengchen18 omic3plus mengchen18 omicade4 mengchen18 proturn Mass spectrometry, protein turnover, TMT-pSILAC menggf DEComplexDisease A R package for exploratory investigation to complex disease mengli20 rainunits menglin44 simapower mengqinxue DBNorm Distribution-based normalization mengqinxue DPL mengqinxue GAProject mengyigao PWS Personal Weather Station mengyin mixash An R package for adaptive shrinkage with mixture likelihood mengyin vashr An R package for variance adaptive shrinkage mensxmachina BioDataome meowcat MassInSpectoR meowcat RMassBankData meowcat RMassScreening meowcat fastliclust Hierarchical agglomerative clustering on undirected weighted graphs in R meowcat sessionR meoyo AIPS Absolute Inference of Patient Signatures mera2 First-assignment mera2 Rdata R packages mera2 our_euc mercaldo MMLB mercaldo mes Maximum Entropy Sampling mercaldo mvs No description or website provided. meredithakrause metagear-expansion meredithfranklin sptdist R package for spatio-temporal distance matching merkys MixtureFitting R package for fitting mixture distributions to data using various approaches merlinoa casdata CAS loss reserving data sets merlinoa diehard3000 Simulate survival contingent benefits using actuarial life tables merlinoa emod Calculates and communicates workers compensation E-mod merlinoa exhibit clean up objects returned by ChainLadder package merlinoa lossdb Insurance loss data management merlinoa rfrappe htmlwidget for frappe charts js library merlinoa shinyFeedback R package for displaying user feedback next to Shiny inputs merlinoa summaryrow Flexible tool for adding summary rows to a data frame merns postgwas postgwas package for R merrillrudd LIME Length-based integrated mixed effects model mertensu adex R-package for visualising results from adaptive bayesian experimentation mertensu afexplot An R-package for visualising factorial experiments mertnuhoglu rutils R utility functions that I use frequently. mertnuhoglu study_r_package01 Testing how to create and manage R packages mertnuhoglu yuml_to_rdb_schema This R package converts yuml based (see https://yuml.me) data models to rdb (requirements database) schema data. mescolano test mespe Rcimis mespe phenR Basic package for calculating heat units and calibrating phenology in R mesudell joineRmeta Package to model joint longitudinal and time-to-event data from multiple studies metaOmic MetaDCN metaOmic MetaDE Differential analysis of multiple studies metaOmic MetaKTSP metaOmic MetaPath Meta analysis pathway enrichment metaOmic MetaQC metaOmic MetaSparseKmeans Meta Sparse K means metaOmic metaPCA repository for metaPCA metaOmic preproc Preprocessing package for meta-omics analysis metaOmics MetaDCN metaOmics MetaDE Differential analysis of multiple studies metaOmics MetaKTSP metaOmics MetaPath Meta analysis pathway enrichment metaOmics MetaQC metaOmics MetaSparseKmeans Meta Sparse K means metaOmics metaPCA repository for metaPCA metaOmics preproc Preprocessing package for meta-omics analysis metacran camo Load multiple versions of the same R package metacran cran2gh Mirror CRAN on Github metacran cranatgh Mirror CRAN @ GitHub metacran cranatghtest metacran crandb Database of CRAN R packages metacran cranlogs Download Logs from the RStudio CRAN Mirror metacran desc Manipulate DESCRIPTION files metacran description Manipulate DESCRIPTION files metacran ghdb Database of R packages in Github metacran mason A friendly craftsman that builds you great R packages metacran mason.github Mason template for an R package at GitHub metacran mason.rpkg Mason template for a generic minimal R package metacran r-builder-test A minimal R package to test the r-builder on various CIs metacran rpkg The R package manager metacran rversions R versions and release dates metacran seer Search R packages on CRAN metacran semver Semantic versioning of R packages metacran spareserver HTTP with backup server(s) metadevpro traitbaser R Package for accesing the API of Traitbase project. https://www.traitbase.info metagraf rHighcharts An R wrapper for Highcharts JS metagraf rVega An R wrapper for Vega metagraf sparkle Shiny add-ons metamaden InfiniumPurifyr Estimate tumor enrichment from methylation array data. metamaden cgageR Get methylation-based age estimates. metamaden methyIntegratoR R library for integrated analysis involving methylation arrays and other molecular data. metamaden methyPre Methylation array preprocessing. metamaden pyroseqFindeR Easily get flanking nucleotides and annotation for HM450 probes interactively. methodds stminsights A Shiny Application for Inspecting Structural Topic Models metinbulus designCRT Statistical power analysis tools for designing cluster randomized trials (CRTs). Includes functions to calculate minimum detectable effect size (MDES), minimum required sample size (MRSS), power (1 - type II error), functions to estimate optimal sample sizes (OSS) under various constraints, and to visualize duo or trio relationships between MDE… metinbulus irtDemo Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models. metinbulus irtDemo-0.1.1 metno GHE Greenhouse effect - R code for demonstrations metno R4CLIM metno esd An R-package designed for climate and weather data analysis, empirical-statistical downscaling, and visualisation. metno esd.test ESD - Climate analysis and empirical-statistical downscaling R package metno rr.correction An R-package designed for the correction of daily manual precipitation gages over Norway metno wgen An R-package designed to analyse gridded and non-gridded space-time meteorologic variables of interest. metno wgen.data Voluminous data for the R-package wgen metronhomo brostatistics BrosBien metrumresearchgroup TorstenHeaders Torsten math library for rstan metrumresearchgroup d3Tree htmlwidget that binds d3js collapsible trees to R and Shiny to make an interactive search tool metrumresearchgroup fluidSpline metrumresearchgroup metrumrg metrumresearchgroup shinyCanvas metrumresearchgroup shinymetrum metrumresearchgroup sinew Generate roxygen2 skeletons populated with information scraped from the function script. metrumresearchgroup stantools R package of utility functions for stan metrumresearchgroup texPreview metrumresearchgroup vcs Remote repository file querying, structure inspection, script sourcing directly from R metygl ChIPXpress ChIPXpress is a package for enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles. mevers RNAModR Repository for the R package RNAModR mewo2 medley A system for blending regression models in R mexindian ShinyTester An R package to help debug Shiny apps during the process itself. mexindian TileMaker An R package that enables the creation of data tiles for inclusion in a html dashboard or some such. meyera rcusum An R package with tools for the easy creation cusum analysis charts meyera riskcalc An R package that provides implementations of various clinical risk models. meyera riskscorer Programmatically access to clinical risk scores meysubb collegeballR College Sports Data (R Package) meysubb meylib My Personal R PKG meysubb ncaaR Scrape NCAA (College) stats using R mfabla cats cats package mfalbertsGMail Solvas-Capital-R-Utility Solvas-Capital-R-Utility mfalbertsGMail TestRPackage1 TestRPackage mfalbertsGMail itunes mfalbertsGMail test test mfasiolo esaddle Tools for fitting the Extended Empirical Saddlepoint density approximation. mfasiolo mgcFam Extra distributional families for mgcv mfasiolo mgcViz An R package for interactive visualization of GAM models mfasiolo mvnfast Fast methods for multivariate normal distributions mfasiolo qgam Additive quantile regression R package mfasiolo synlik_release Synthetic Likelihood methods for intractable likelihoods. mfasiolo volesModel Voles prey-predator model mfazel morpheus.R mfazel tRegs mffrank RNAseqToCustomFASTA Produce custom protein fasta databases from RNAseq data mfidino uwinr An R package for UWIN databases mfjoneill gwrpvr Genome-Wide Regression P-Value (Gwrpv) mfontcada rRoad Road distances and routes with R, GraphHopper and OpenStreetMap mfoos MFP for Bioc2017 tutorial mfoos maRge R package for FUN ONLY mforlin LINCSDataPortal R package to query LINCS Data Portal mforlin LINCSanalytics An integrated platform for the efficient query and computation across diverse LINCS signatures mforlin LINCSdata R package to query and compute data and metadata from LINCS project mforlin LINCSdataportal R package to query LINCS Data Portal mfrasca r-logging R port of the popular log4j logging module mfrdixon MLEMVD Maximum likelihood estimators for multi-variate diffusions mfrdixon OSTSC Over sampling for time series classification mfriedri12 fedmatch Record linkage functions in R mfschmidt mfs.r.utils R functions that simplify my projects mfukata testR mg14 deepSNV-old A bioconductor package for subclonal variant calling mg14 mg14 mg14's favourite R functions mgahan SeatGeekR R package to extract Stubhub data through API mgahan Useful_Files mgahan WanderingEye mgahan boRingTrees R Package for UIUC Dalling Lab mgaldino tbaep Pacote da Transparência Brasil para o projeto Achados e Pedidos mgborges mahalanobisDist Mahalanobis distance between two groups mgencare RBigPivot mghamilton getAinv mgimond tukeyedar An R package of Tukey inspired exploratory data analysis functions mgledi DiffLogo DiffLogo: Comparative visualisation of sequence motifs mgnaegi sparsecomp mgnaegi test mgnaegi topten Building a prediction model for top 10 features mgperry heatmaps Plotting package originally based around the seqPattern Bioconductor package. Still very much in development. mguevara diverse An R package for measuring Diversity mhahsler TSP Traveling Salesperson Problem - R package mhahsler arules Mining Association Rules and Frequent Itemsets with R mhahsler arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules - R Package mhahsler arulesViz Visualizing Association Rules and Frequent Itemsets with R mhahsler dbscan Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms - R package mhahsler qap Heuristics for the Quadratic Assignment Problem (QAP) - R package mhahsler rBLAST Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package mhahsler rMSA Interface to Popular Multiple Sequence Alignment Tools - R-package mhahsler recommenderlab recommenderlab - Lab for Developing and Testing Recommender Algorithms - R package mhahsler seriation Infrastructure for Ordering using Seriation - R Package mhahsler stream A framework for data stream modeling and associated data mining tasks such as clustering and classification. - R Package mhahsler streamMOA mhairi ahrefs mhairi authoritylabs mhairi buzzsumo mhairi clusteringkeywords mhairi deepcrawl mhairi diffbotr mhairi keyword_tool_api mhairi keywordsclustering mhairi ordered Quick ways of making ordered factors in R. Particularly useful for ggplot barplots... mhairi pagespeed mhairi test mhairi text-mining mhairi text_mining An R package for making text mining easy mhernan88 RelimpPCR Relative Importance PCA Regression in R mhesselbarth SHAR Package to analyze species habitat associations mhesselbarth rABMP Functions for agent based modeling of plants mhils shortestpath Shortest Path Algorithm Visualization mhk123 ma2net mhminai helpR R package for functions I use frequently mhowlett rnanomsg R binding for nanomsg mhpedersen tblr High-level versatile formatting of tables for use in knitr/Sweave mhsteppan probMR Package for calculating Capture/Recapture population size estimates for two or more data sources (Multiple Recapture) mhtess rwebppl RWebPPL, an R interface to Webppl http://webppl.org mhudecheck revgeo Reverse Geocoding in R with Google Maps API and Photon API mi-erasmusmc patientLevelPredictionUI An UI built on top of the R package for building patient level predictive models using data in Common Data Model format. mi2-warsaw FSelectorRcpp Rcpp (free of Java/Weka) implementation of FSelector entropy-based feature selection algorithms with a sparse matrix support mi2-warsaw GOpro mi2-warsaw PISAoccupations Shiny app and package for exploring data from PISA study. mi2-warsaw auditor Audit / verification of regression models https://mi2-warsaw.github.io/auditor/index.html mi2-warsaw directRNAExplorer An R package for analyzing and visualisation the sequencing data mi2-warsaw extremeMetrics An Usage of Literate Programming for R Package Development mi2-warsaw gg2shiny Convert an ggplot to a shiny application mi2-warsaw lmmfit Goodness-of-fit-measures for linear mixed models with one-level-grouping mi2-warsaw profilesGO No description or website provided. mi2-warsaw sequencingExplainer An R package for analyzing and visualisation the sequencing data mi3112 Building_an_R_Package miaozhun DEsingle An R package for differential expression analysis of single-cell RNA-seq data miaramirezho demoRvacio miccec mwwGSEA A collection of wrappers to the Wilcoxon test to run competitive gene set and regulon enrichments miccec yaGST miccio-dk lastrfm Read data from the last.fm APIs michael-herman quartertime michaelblack97 Data-Science-S2-Package-Week-1 Footballing package. michaelblack97 test michaelblack97 this-is-a-repository michaeldorman geobgu Functions and Datasets for the Department of Geography at BGU michaeldorman mapsapi 'sf'-Compatible Interface to Google Maps APIs michaeldorman nngeo k-Nearest Neighbor Join for Spatial Data michaeldorman shadow R Package for Geometric Shadow Calculations michaelfop LCAvarsel R package implementing variable selection for latent class analysis for model-based clustering of multivariate categorical data michaelfop varselLCA R package for variable selection for latent class analysis michaelgao8 dukeehR An R package for processing EHR data at Duke michaelgavin empson michaelgavin htn michaelgavin rights michaelgavin tei2r michaelgill1969 coursera-data-science-capstone-assignment-final-project-submission This package, submitted in partial fulfillment of the requirements of the Coursera course, "Data Science Capstone", contains functions for an auto-completion model that predicts the next word to be typed based on a word or phrase previously typed. michaelgill1969 econometrics Regressions / Econometric analyses in R with data from MySQL database michaelgordy basicAffineProcess R package for basic affine processes michaelgruenstaeudl CommT_Code R code for the Community Tree project michaelhallquist MplusAutomation The MplusAutomation package leverages the flexibility of the R language to automate latent variable model estimation and interpretation using Mplus, a powerful latent variable modeling program developed by Muthen and Muthen (www.statmodel.com). Specifically, MplusAutomation provides routines for creating related groups of models, running batches of models, and extracting and tabulating model parameters and fit statistics. michaeljbraus wrightify Tools4RR Project michaellevy customThemes My themes for ggplot2 michaellevy gwdegree Shiny app to improve ERGM estimation and interpretation michaellevy netUtils Network utility functions R package michaelmalick r-chroma An R package for creating consistent color palettes using the HCL color space michaelmalick r-codatools An R package to extend the usefulness of CODA MCMC diagnostics michaelmalick r-jagstools An R package to conveniently run JAGS in parallel from R michaelmalick r-malick An R package containing random but personally useful functions michaelmina virScanR virScanR michaelpmcdonald IATanalyses michaelpmcdonald WMIAT WMIAT michaelpmcdonald cogkit Tools for scoring, analysis, and modeling common cognitive psychological tasks michaelpmcdonald noggin Tools for scoring, analyzing, and modeling common cognitive psychological tasks michaelpmcdonald rgo A swift ship full of misfit functions. michaelquinn32 adventureR This package accompanies posts on the Big Blog of R Adventures. michaelquinn32 generators A grammar of iteration in R michaelquinn32 lambdaList A package that implements an R translation of Steve Losh's List Out of Lambda. michaelrahija SuSoPara michaelsa93 work_repo michaeltoth tothr tothr is a personal R package with functions that I find useful in my everyday R use michaelway KASParClean An R package which speeds up the processing of endpoint-genotyping data files exported from a LightCycler480. michaelway ggkm Kaplan-Meier plots with at risk table below michaelweylandt xtsPlots Additional Plotting Code for xts Time Series michaelwitting swathR swath data processing based on XCMS 3 michaelzxu deepforest michaja quitte michal2409 IFSpremium michaldanaj MDBinom Funkcje do analiz zmiennej dwumianowej michaldanaj cauchyTest Test zgodności z rozkładem Cauchy'ego michalmonselise read.folder Read an entire folder using the read function of your choice michathoma flywalkr Analysis tools for the flywalk behavioral paradigm michbur AmyloGram Prediction of amyloid proteins michbur MBmca Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R michbur aagui GUI for aminoacids clustering michbur biogram N-Gram Analysis of Biological Sequences michbur chipPCR Toolkit of helper functions to pre-process amplification data michbur dpcR Analysis, visualisation and simulation of digital PCR experiments. michbur period Detect periodicity in in quantitative real-time polymerase data michbur plotest michbur signalHsmm Prediction of signal peptides michbur signalhsmm Prediction of signal peptides michel823 mafonction solution de exercice r package michel823 rstudioDemo michel823 testHub michelbieleveld pseudopresence michelk SurfaceMesh.R R library to work with surface-meshes used for surface-water-modelling michelk annotSrcDoc.R minimal source code annotation documentation michelk basement.R Library to work with BASEMENT michelk logbuch.R Keep track of you workday-hours in a diary style michelk mesh2d.R Surface mesh generation from Shapefiles michelk reframe.R Convert Swiss coordinate system from LV03 to LV95 with Swisstopo REST API michelk riverCS.R Library for river-cross-section analysis and modification michelk spring.R Utilities to work with finite element meshes within spring from delta h michelk template.R Very simple string-template-interpolation michelk wasim2.R Utilities to work with the hydro-logic modeling system WaSiM michellegrace Disp.MGS This R-package is a place to store common routines to read and analyze dispersion model inputs and results. michellegrace mgs.dispersion This repository is used for past, present and future dispersion model related projects. Scripts are meant to read, write, and analyze dispersion model inputs and outputs. michellelawing ppgm Paleophylogeographic Species Distribution Models michmich76 ctsGE Clustering of time series gene expression data michstrauch TopHRU Threshold optimization for HRUs in SWAT mickaeltemporao mtmisc R-Package containing a miscellaneous set of functions used in my coding. mickwar mwBASE Personal R package mickwar mwEVT Extreme value analysis mickwar mwbase Personal R package micmic1111 cadreonRTaskDev microbiome HITChipDB HITChip Database functions microbiome RPA Robust Probabilistic Averaging microbiome biopax2 microbiome microbiome microbiome R package microbiome microbiomeold Deprecated legacy version of the microbiome package without phyloseq bindings microdinosaur theintersect Personal R Package and Function microsud microbiomeutilities The is mostly a wrapper tool. Apart for some simple scripts, this package has a single function to carry out preliminary QC, Alpha Diversity, Ordination and Composition analysis of OTU tables. midraed water R package to calculate surface energy balance models mienkoja oliveR Database access and measurement development for the oliveR SMS miepstei MetabDILT1D miepstei MetabolonR Package for reading in Metabolon data files mightyphil2000 ForestPlots R package to generate forest plots for results from MR-Base miguel-porto SiMRiv Individual-based simulation of multistate movements in rivers, heterogeneous and homogeneous spaces incorporating local landscape bias in R miguelbiron mcMDISolver A package for solving MDI estimation problems (minimum cross entropy) using a Monte Carlo approach miguelbiron sowan2net An R package to infer edge weights of a graph from data on the Sums of Weights At the Nodes mihaiconstantin SecondInternship mihaiconstantin changeIRT An R Package For Change Assessment and Data Simulation Under the IRT Framework mihaiconstantin chgassesirt R package for Change Assessment using IRT mihaiconstantin ina Internal internship on Network Analysis for authorship data at Tilburg University. mihaiconstantin simulateirt An R Package For Data Simulation Under the IRT Framework mihaicroicu priogridtools Simple tools for priogrid management in R, such as lat/lon->priogrid and reverse mihawk2016 RMitekeLab Miteke Lab, a shiny project mihawk2016 muffin a financial package for R mihawk2016 muffin.indicator technical indicators miheerdew BMD-metrics Metrics to analyse bimodules miheerdew bmdmetrics Metrics to analyse bimodules miheerdew bmdupdate mihock iana Browser-based GUI for item analysis mikabr dmww-sims mikabr ggpirate pirate plots for ggplot2 mikabr testpackage mikaelpoul atekstR Extract articles (with metadata) from .txt-files downloaded from ATEKST mikaelpoul parseAtekst Extracting articles (with metadata) from .txt-files downloaded from ATEKST mikaelpoul readgdf Read gdf files into R as igraph graphs. mikaelpoul selective Conjoint experiment on selective exposure mikaelpoul ssbR Download data from Statistics Norway (SSB) mikaelpoul tidystm Extract effect from estimateEffect in the stm package mike-lawrence ez Development repository for the `ez` package for R mike-lawrence ezStan An R package containing helper functions for Stan mikeasilva blsAPI BLS API wrapper for R mikebesso two.laws.big.bang mikebesso two.laws.blog mikebesso two.laws.data mikebesso two.laws.dev mikebesso two.laws.excel mikebesso two.laws.html mikebesso two.laws.html.widgets mikebesso two.laws.os mikebesso two.laws.quant.charts mikebesso two.laws.quant.indicators mikebesso two.laws.time.series mikebesso two.laws.xml mikegerhardt echem Packages for data import and analysis with Gamry software mikegros cnosmc cnosmc package for R mikejacktzen datzen datzen misc R helpers mikejohnson51 HydroData A package for finding and getting hydrologic, climate and landscape data for mapping, modeling, and analysis. mikejohnson51 Rainfall_Infiltration_hillslope Model to test variable rainfall rates on the coupled infiltration runoff patterns on a hill slope mikelove DESeq2 Differential gene expression analysis based on the negative binomial distribution mikelove SparseData perform stats on sparse data sets mikelove alpine Modeling and correcting fragment sequence bias for RNA-seq mikelove alpineData http://www.bioconductor.org/packages/… mikelove fastqcTheoreticalGC R package for generating theoretical GC content curves for the FASTQC module mikelove polyesterAlpineMs A fork of the polyester software, used in the alpine manuscript. mikelove tximeta Import Salmon/Sailfish transcript quantification into R/Bioconductor with automagic generation of metadata mikelove tximport Import and summarize transcript-level estimates for gene-level analysis mikemayer67 RCoverTree mikemcclendon Coursera-Software-Development-in-R-Capstone Capstone project for the Coursera Mastering Software Development in R specialization mikemcclendon farsfunctions An R package that provides useful functions and geospatial visualizations for analyzing National Highway Traffic Safety Administration incident data. mikemeredith AHMbook Functions for the book 'Applied Hierarchical Modeling in Ecology' mikemeredith BEST Bayesian Estimation Supersedes t-Test mikemeredith HDInterval Highest (Posterior) Density Intervals mikemeredith MMmisc mikemeredith hpdi Highest (Posterior) Density Intervals mikemeredith makeJAGSmask Functions to create a habitat mask for SECR analysis in JAGS mikemeredith makeMaskJAGS Functions to create a habitat mask for SECR analysis in JAGS mikemeredith overlap R package: estimation of overlap of activity patterns mikemeredith toybox Games for Boot Camps mikemeredith wiqid Quick and Dirty function for Wildlife simulations mikeod38 MF.matR Microfluidics behavior analysis integrated with Matlab and Wormlab mikeod38 dauergut repo for rict-1 dauer manuscript mikewlcheung metasem metaSEM package mikey-harper HarpR R Package for useful code chunks mikigom Rtextrankr TextRank for Korean in R mikkelkrogsholm alarmeringsapp Retrieves and parses the xml data from the alarmeringsapp rss feed as can be found her: https://alarmeringsapp.like.st/rss mikkelkrogsholm billboard This is a data package, that contains data sets regarding songs on the Billboard Hot 100 list from 1960 to 2016. The data sets include the ranks for the given year, musical features of a lot of the songs and lyrics for several of the songs as well. mikkelkrogsholm bolighed This is an R package for getting gata from bolighed.dk mikkelkrogsholm dawa R pakke til Danmarks Adressers Web API - DAWA. mikkelkrogsholm hexamapmaker Turns a set of points into hexagons mikkelkrogsholm murderdata See more here: mikkelkrogsholm musicbrainz An R wrapper for the MusicBrainz API mikkelkrogsholm pollsDK Pulls different political danish polls mikkelkrogsholm postlightmercury R wrapper for the postlight mercury web parser mikkelkrogsholm realestateDK A Wrapper for the API of the Danish Housing Market Statistics mikkelkrogsholm rebrickable A wrapper in R for the rebrickable API mikkelkrogsholm statsDK A wrapper for the Statistics Denmark API mikmart fmir mikmart intervalr Work with date interval data in R mil2041 CNCDriver mil2041 CompositeDriver Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers milafrerichs mapping-with-d3-presentation milafrerichs plotmapbox Plotting Mapbox Static Maps with R and ggplot2 milafrerichs tile-server-stack-armhf millerlp oceanwaves R package for ocean wave height statistics, from pressure sensor data milokmilo Stranded Calculate Biological Parameters from Stranded Cetaceans milokmilo strandCet milumtextiles itemsim min110 foofactors Factor Detection minbad quickEDA R Functions for Exploratory Data Analysis. mindyyang GA-R-package- mine-cetinkaya-rundel dictionary R package with words from the English dictionary, their types and meanings mine-cetinkaya-rundel lullabyr Generate children's songs with random words mine-cetinkaya-rundel rotten Movies dataset combining information from Rotten Tomatoes and IMDB minerva79 joke Random joke generator mingchen-lab cytosee mingjerli IMFData An R package for IMF data api mingjerli RegOfPkg Install Fund Approved Packages mingjerli codeTesting mingjerli igraphinshiny mingjerli rWBData Access World Bank Open Data from R mingjerli rWEO Access WEO data in R minh2182000 gpd minimenchmuncher RSSC R wrapper for NREL SAM Simulation Core minimenchmuncher courseraSkCapstone Coursera Data Science Capstone minion-r mopr Parse Minion output in R. minion-r rminion Call Minion from R minniejoo BayesMFSurv R package for fitting Bayesian parametric Missclassified Failure Models mintoc lhmixr R code for fitting sex-specific life history models with missing classifications minzheguo SINCERA An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis minzheguo SLICE A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data miqdadasaria ccg_equity CCG Equity Indicators miquelcaceres VegX Functions to import, integrate, harmonize and export vegetation data using the VegX standard (ver. 2.0.0) miquelcaceres vegclust miraisolutions godmode Godmode package for R miraisolutions rTRNG R package providing access and examples to TRNG C++ library miraisolutions sparkbq Sparklyr extension package to connect to Google BigQuery miraisolutions sparkgeo Sparklyr extension package providing geospatial analytics capabilities miraisolutions xlconnect XLConnect: Excel Connector for R miraisolutions xlconnectjars XLConnect JAR dependencies miriamMota biom Construcción y validación de un biomarcador a partir del paquete CMA de R miriamMota mmotaF Funcions utils per a bioestadistica i bioinformatica miroslavsabo sutils Miscellaneous utility functions mirtaher TwoPeriodSim Two period model simulations mirtaher learn mirtaher remoteClassGit misasa MedusaRClient misasa chelyabinsk R package for geochemical datasets misasa rMedusaRestClient miserman lingmatch An all-in-one R package for the assessment of linguistic similarity miserman lsm miserman splot An R package to ease data visualization missuse ragp Filter plant hydroxyproline rich glycoproteins misxenia amen_mod mitcda abs.ahecc Data from the Australian Bureau of Statistics' (ABS) Australian Harmonized Export Commodity Classification (AHECC) 2007, 2012 and 2017 mitcda abs.sacc data from the Australian Bureau of Statistics' (ABS) Standard Australian Classification of Countries (SACC) mitcda dibp.actc Provides data from the Combined Australian Customs Tariff Nomenclature and Statistical Classification 2017 mitcda predict.utils R iterative prediction utility functions mitcda sacc2016 Standard Australian Classification of Countries 2016 mitchelllisle mlr_package An R Package for basic operations in R mitchelllisle mlr_r_package An R Package for basic operations in R mitchelloharawild fasster Forecasting with Additive Switching of Seasonality, Trend and Exogenous Regressors mitchelloharawild ggquiver R package for quiver plots in 'ggplot2' mitchest optimus model-based assessment of competing clustering solutions, particularly optimal partitioning of community classificaitons mitre mvndeps Use (previously installed) maven from R to resolve java dependencies mitre sparklyr.nested A sparklyr extension for nested data mixergtz Rlibdemo Testing R library creation mixtrak geohydroeco.WRS.2014 Data and analysis vignettes for an aquifer microbial ecology research project mixtrak microecol microecol mixtrak mixtrak Personal R package with stuff I find useful mixtrak mixtrak.R.analysis Personal R analysis package with idiosyncratic configs, dependencies and helper functions. mixtrak mixtrak.R.dev Personal R package development package mixtrak mixtrak.fitness An R package project to learn more about working with data formats such as YAML (and perhaps improve my fitness). mixtrak mixtrak.music R package for learning/practising music, particularly guitar mixtrak mixtrak.nepali R package for learning Nepali mixtrak mixtrak.timekeeping R package for setting goals, allocating time, managing projects etc. mixtrak wellington.aquifer.ecol Data and analysis vignettes for an aquifer microbial ecology research project miyamot0 discountingtools This is a R-based package for performing a range of delay discounting analyses and procedures. mizumot cor Correlation mizumot paired Comparing paired samples mjdaniels BNPMediationProject mjdaniels PatternMixtureModelforRepeatedAttemptData mjdufort R10Xtools R package with tools for secondary analysis of 10X Genomics single-cell RNA-seq data. A work in progress, with functions added as they are needed. mjdufort RNAseQC Tools for conducting QC on RNAseq data mjdufort WGCNAtools mjdufort comboVisTools Tools for combined visualization of multiple RNAseq analysis types. Currently contains combo visualizations for WGCNA and limma results. mjdufort countSubsetNorm Helper functions to conduct subsetting and normalization of RNAseq data. Most of them are wrappers to facilitate workflows. mjdufort geneSetTools Accessory tools to facilitate gene set analyses of RNAseq data. mjdufort limmaTools Accessory functions for differential gene expression analyses using limma mjdufort miscHelpers Miscellaneous helper functions for analysis of RNAseq data. A hodgepodge of stuff that doesn't fit into other packages. mjevans26 ESApprops R project for organizing, graphing, and publishing ESA expeditures data. mjevans26 NMFS7 Repo for analysis of NMFS section 7 data mjevans26 eaglesFWS R repository and shiny app for displaying FWS eagle wind farm risk model mjevans26 esapriorities FWS 7-year workplan R package mjfii Credit-Card-Helper mjfii Email-Validation Simple functionality to validate character vectors for correct email formatting. mjfii Local-Extrema R Library to define local minima and maxima of a numeric vector, including visualizations and other relative metrics. mjfii Name-Parser An R library allowing parsing of surname, first name, and gender based on US census data. mjfii TSQL-Documentation Utilizes MS SQL metadata to document any given database. mjfii The-Fountainhead Ayn Rand's classic 1943 novel conveyed through R objects. mjg211 phaseR mjhelf Mosaic mjholt02 medibalance mjkallen rlogging An R package for simple logging mjlacey arbintools An R package for importing and plotting functions for battery cycling data exported from Arbin's MITS Pro software. General functions for other instruments in development! mjmarin mjtools R programming useful tools mjmg bluQPlotAw mjmg bluQPlotPEP mjmg bluQpieChartResults mjmg bluQplantQPEPBB mjmg bluQplantQPEPVN mjnueda maSigPro mjockers syuzhet An R package for the extraction of sentiment and sentiment-based plot arcs from text mjsduncan Rmoses R wrappers and tools for opencog meta-optimizing semantic evolutionary search mjskay ARTool R Package for Aligned Rank Transform for Nonparametric Factorial ANOVAs mjskay dtstudent Discrete Truncated Student-t Distribution for R mjskay flatworm Flattened worm plots (flattened detrended QQ plots) in R mjskay metabayes R package for specifying Bayesian models (JAGS, Stan) as R code mjskay tidybayes Bayesian analysis + tidy data + geoms (R package) mjsteinbaugh devtools devtools addons mjtat cobparking mjwestgate bibviewr Interactive visualisation and classification of bibliographic data mjwestgate circleplot Tools for exploring distance matrices using circular plots. mjwestgate revtools Tools to support research synthesis in R mjwestgate sppairs Species Pairwise Association Analysis (SPAA) mkampert rCOSA Clustering objects on subsets of attributes mkanai WRShd An Experimental Refactor of the Harrell-Davis Estimate Functions from R. R. Wilcox' Robust Statistics Package WRS https://github.com/nicebread/WRS mkanai ccmatch R package for optimal matching of cases to controls using network flow theory. mkanai deFinetti R package for plotting a de Finetti diagram and distributions of F-statistics of genotypes. mkanai ggman R package for plotting a manhattan plot using ggplot2. mkao006 FAOSTATpackage The full FAOSTAT package including build mkao006 sws_flag This is an add-on package to the faosws library to support the manipulation and the aggregation of flags. mkao006 sws_util This is an add-on utilities package to the **faosws** package mkborregaard gambin the gambin R package mkborregaard nodiv the nodiv R package mkbouaziz OrientR OrientR is an API wrapper for OrientDB. mkds Flow Data Science Workflow in R mkdyderski MKDgeobot mkdyderski gamemanageR for processing game management data from sample drives mkearney apitools Tools for making API packages in R mkearney chr Lightweight R package for manipulating [string] characters mkearney coordsRhere Miscellaneous classes and methods for working with geographical coordinates mkearney googleapis R client for accessing Google Cloud Natural Language APIs mkearney lavplot Simple diagram plot package mkearney mikelect polling data and functions for 2016 election mkearney mjolnir Hammer nested lists into data frames. mkearney newsAPI API wrapper/R client for accessing https://newsapi.org mkearney nyt R client for NYTimes article search API mkearney nytimes R client for New York Times' article search API mkearney prettysimplemd Makes pretty simple markdown files mkearney rmd2jupyter Convert Rmd (rmarkdown) to ipynb (Jupyter notebook) mkearney rtweet R client for accessing Twitter [stream and REST] API mkearney squish mkearney tfse R functions for various things mkearney trickrtweet Building your Twitter network using R mkearney uslides Rmarkdown template for pretty university-themed beamer presentations. mkearney warcraft Warcraft mode for R mkearney youtube2mp3 converts youtube video to mp3 mkesslerct opadar Useful functions for the daily operations of the OPADA, UPCT mkesslerct testproject mkiang narcan An R package for working with multiple cause of death data mkirby3 clrlyr Convenience functions for doing data science in R at Clearly. mkirch covfefe Turn any word, sentence or speech into the "covfefe" format in R. mkirch issueReporter Create reports from GitHub Issues in R. mkln NLKM Functions mknoll cnAnalysis450k A package for comparative CopyNumber Analysis of Illumina methylation array data (450k + EPIC) mknoll dataAnalysisMisc Tools for everyday data analysis. mknoll imageanalysisBrain Extracting imaging features and separating MRI data into different tissue classes. mkoohafkan RAStestR An R package for basic testing of HEC-RAS outputs mkoohafkan arcpyr R interface for Arcpy mkoohafkan arcpyr6 R6 implementation of arcpyr mkoohafkan arcpyrenv environment-based implementation of arcpyr mkoohafkan arcpyrextra Extensions to arcpyr mkoohafkan ballin-octo-batman Dummy package to reproduce problem with knitr and R CMD check mkoohafkan concentrationgames mkoohafkan crispy-spork dummy package for testing mkoohafkan esh mkoohafkan expyr A basic R <--> Python interface using sockets mkoohafkan figr first stab at a figure and table reference manager for use with knitr and rmarkdown mkoohafkan flowregime R package for computing environmental flow regime indicators mkoohafkan habitatblueprint Habitat Blueprint Browser mkoohafkan kfigr A streamlined cross-referencing package designed specifically for use with knitr. mkoohafkan perspyr mkoohafkan pysockr A basic R <--> Python interface using sockets mkoohafkan reval repeated function evaluation for sensitivity analysis in R mkoohafkan rivr An R package for open-channel hydraulics mkoohafkan rremat collection of functions for processing RRE data from Matlab files mkoohafkan transpyr An R package for transferring data between Python and R mksamur RTCGAToolbox mkuhn StudentMetaMean Calculate Weighted Mean of Student's t Distributions mkuhn dict Dictionary with arbitrary keys and values for R mkuhn maskedCorr Compute correlations based on incomplete data ml-e ML-library ml-e ml4eda mlaib CombinS Construction Methods of some Series of PBIB Designs mlaib Design_Of_Experiments Some algebraic construction methods for experimental designs. mlaib FractalTools Fractality-based tools mlaib MFDFA Application of the MultiFractal Detrended Fluctuation Analysis (MFDFA) on Time Series mlaib PGM2 R package mlaib RPPairwiseDesign R package mlaib SFtools Space Filling Based Tools for Data Mining mlammens demgsa mlammens meteR an r package for use with the maximum entropy theory of ecology mlammens spThin mlampros AKNN approximate kernel k-nearest neighbors in R mlampros ClusterR Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids clustering mlampros FeatureSelection Feature Selection in R using glmnet-lasso, xgboost and ranger mlampros KernelKnn Kernel k Nearest Neighbors in R mlampros OpenImageR Image processing Toolkit in R mlampros RandomSearchR Find the optimal parameters of an algorithm using random search in R mlampros fuzzywuzzyR fuzzy string matching in R mlampros textTinyR Text Processing for Small or Big Data Files in R mlanier summer Summation, Zeta function in R similar to CAS systems mlawre01 FirstRPackage1 mlcollyer RRPP mlcollyer chatham.bio532 Statistical tools, data sets, and R scripts, specifically for the BIO532 (Biostatistics) curse at Chatham University mlcollyer rarelime Randomized Residual permutation procedures for linear model evaluation mlgarciavaquero marinatest mlgiordano1 mgPackage a set of personal functions mlgrm svy tools for importing surveys from ODK and analysing them in R mlgrm svyr tools for creating and analysing odk surveys in R mlguys ShinySolarCalculator A Shiny app for calculating solar energy on a tilted surface in ideal sky condition. mlhutchins fast-analytics Fast prototyping of analytic scripts. mlhutchins tmath An R package that shouldn't be worried about. mlinegar litMagModelling Easy text analysis on journals from the Modernist Journals Project mlist SPONGE Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference mljar mljar-api-R R wrapper for MLJAR API mlkornexl easyRedis helper functions to access Redis cache mlkornexl gridGaugeChart mlkornexl r-pkgs R Packages mllbao MWLasso The R functions to run a moving-window penalized regression method mllg backports Reimplementations of Functions Introduced Since R-3.0.0 mllg base64url Fast and url-safe base64 encoder and decoder mllg batchtools Tools for computation on batch systems mllg checkmate Fast and versatile argument checks mllg checkmate-test-include R package to test checkmate.h mllg conditions Standardized Conditions for R mllg fail File Abstraction Interface Layer (FAIL) for R mimicking a key-value store mllg fmrmr MRMR feature selection mllg sensible Sensible defaults for R mllg test-testthat No description or website provided. mllg travis-test Test the new container-based infrastructure of travis with R mlou19 Odds- mlpeck cosmo Cosmological distance calculator in R mlpeck lppuw Linear program based phase unwrappers mlpeck zernike Tools for interferogram analysis and manipulation of Zernike polynomials mlr-org automlr mlr-org farff a faster arff parser mlr-org mlr mlr: Machine Learning in R mlr-org mlrCPO Composable Preprocessing Operators for MLR mlr-org mlrMBO Toolbox for Bayesian Optimization and Model-Based Optimization in R mlr-org mlrPipelines mlr-org mlrng mlr-org mlrngLearners mlr-org phng ParamHelpers Next Generation mlsayers rdcol mlt csdf Campbell Scientific data formats support like TOA5, CSIXML, TOB1 for R mlt csdshow mlt swap2r R package to deal with SWAP stuff from Alterra including TTUTIL Fortran bindings to handle configuration files mltConsEcol iButtonDataOrganizer R package for working with iButton Temperature Datasets mluu921 comicscrapeR mluu921 survhelperR mluu921 workhelpR mlux86 flowLearn flowLearn: Fast and precise identification and quality checking of cell populations in flow cytometry mlwalter4 epivizGvizConverter mlysy msde Simulation and Inference for Multivariate Stochastic Differential Equation Models mlysy msdeTest Development version of msde mm-shah MetaNeighbor A method to rapidly assess cell type identity using both functional and random gene sets mmaechler R-bitops R package 'bitops' -- implementing bitwise operations mmaechler miP multiple imputation R package - comparing mice,mi,Amelia, .. mostly graphically mmaechler sfsmisc R package sfsmisc (from *old* code, partly in RCS and backup files) mmaloney007 Misc-Code mmaloney007 Old_Visualizer_Project mmaloney007 shiny mmellis rSPACE Power analysis for occupancy-based monitoring mmiche esmprep R package: Helps preparing raw ESM data for statistical analyses mmider OxWaSPneuralnets module 4 mmiesch msdr3pam Final assignment for Coursera course 3 on "Master Software Development in R" mmollina polymap Software to construct genetic maps in autopolyploid full sib populations mmoramarco buildingrpackage R Package for Coursera - Building R Packages mmoramarco chimpr mmoramarco gghurricane This package is an assignment for the Building R Packages class on Coursera, part of the Mastering Software Development in R specialization. mmottahedi coursera mmparker mpmisc Miscellaneous functions for reporting around the TB Clinic. mmparker tbdbaid Functions for standardized queries against TBdb. mmparker tbdiag A set of R functions to assist researchers working on tuberculosis diagnostics. mmparker to1check A collection of functions for working with the TBESC2 TO 1 data. mmuslum rmean mmuurr ChunkedMatrix-R-package mmuurr MuratTasan_R_package mmuurr RPostgreSQL "fork" of RPostgreSQL v0.4 mnazhasan FarsRpkg mnblonsky REMI REMI - first commit on Github mndrake CollectiveRisk Aggregate Loss Modeling using Collective Risk Model mndrake cliffnotes visual summary of an R dataframe mndrake d3charts D3 based visuals for use in R mndrake ffbR (Fantasy Football + R) == Awesome mnel dsrTest Tests and Confidence Intervals for Directly Standardized Rates mnel dsrci mnel foo mnel heatwave mnel heatwave_functions mnel linkedEpi ... mnel rmdTemplate Add rmarkdown template skeleton to an R package mnfost d3TimeMap Interactive D3 Time Map for R mnodzenski metabomxtr mnpopcenter ipumsr Read IPUMS output data into R. mnpopcenter ripums Read IPUMS output data into R. mnquants DataHandler mnquants VaR mnr rpigpior R for Raspberry Pi with GPIO support mnunes modeloLEA Modelo de relatório de consultoria para o Laboratório de Estatística Aplicada da UFRN mnwright bnnSurvival Bagged k-nearest neighbors survival probability prediction mnwright simpleRF A simple implementation of random forests in plain R mnwright ttest mo-mahdavi RandomGenerator moaraj dashr mobilizingcs MobilizePrime Simple wrapper functions for high school curriculum mobilizingcs mobilizr ⚡️ A set of functions to use for the Mobilize Intro to Data Science math curriculum. mobilizingcs plotapp 📈 Ohmage/OpenCPU app to build plots modche lhf Helper functions moderndive moderndive R package for ModernDive moecampos 425-project Shiver me timbers moeinm98 distributions mohandaschemmattu RCodeRepository mohita-sr PARS Patient Risk Stratification mohtad mapR Heat map for R with a marketing purpose mohuangx SAVER Single-cell RNA-seq Gene Expression Recovery moj-analytical-services PQTool Tool to analyse past parliamentary questions with visualisation in RShiny moj-analytical-services RAP_code_library For generalised functions for RAP. If there are anyfunctions in your RAP that will be useful to other people, please use this space to share them. moj-analytical-services pq-tool Tool to analyse past parliamentary questions with visualisation in RShiny moj-analytical-services s3browser A R Studio Addin that allows you to browse the files you have access to in S3 moj-analytical-services s3tools moj-analytical-services xltabr xltabr: An R package for writing formatted cross tabulations (contingency tables) to Excel using openxlsx mojaveazure loomR An R-based interface for loom files mokazuma imhistR imhistR package molepi DNAmArray molepi omicsPrint Cross omic genetic fingerprinting molgenis NIPTeR R Package for Non Invasive Prenatal Testing (NIPT) analysis molliejmcdowell foofactors Make Factors Less Annoying molnplus DasProjekt-e1071 molson2 JOUSBoost molsysbio STASNet momah R-Package-for-RESTfull-API R Package for RESTfull-API momeara Bethany Context for Lazarus ancestral gene reconstruction momeara BioChemPantry Load bioinformatics datasets into a local database momeara RosettaFeatures Analyze local structural features momeara SEAR momeara Zr ZIRConium: Zinc Interface/R Client (onium) momeara data_repo Load bioinformatics datasets into a local database momeara rbint mongodb mongo-c-driver A high-performance MongoDB driver for C monkeypicked aa030pa monkeypicked aa040co monkeypicked aace monmon-2007 Images monmon-2007 Images2 monorunner smcolors Makes everything easier. monstrap myW4Assignment moodymudskipper tweak tweak allows you to quickly modify an image, so it can be used for a pictogram, an infographic, an animation... moone009 PreProcess moone009 rpack moone009 tmp_preprocess TBD moone009 wec-preprocess mooneymi gsaPermute An R package for performing permutation tests in gene set (pathway) analyses moonshine13 fars mooretm erp.easy moosik shiny_dynamic_plots moosik snorm R package with functions to add supervised exploration of data structure moralmar earthquakesWithR Package helping to visualize earth quake data moralmar farsdata farsdata package - data and functions for "Fatality Analysis Reporting System" moreno-betancur survMCOD R package for survival analysis with multiple causes of death moreno-betancur survtd R package for survival analysis with time-dependent covariates moritz-hanke LittleHelpers A package with small but useful R functions mormille vanilla.prm vanilla.prm R package morning-consult rheumar Conjoint Analysis in R morningfin sample-R-package mortenarendt DataAnalysisinFoodScience moshagen multiTreeR R interface for multiTree moskante MixedPsy The aim of the mixedpsychophysics project is to provide statistical tools (such as R codes, models and tutorials) for the psychophysics community. This project has a special focus on open-source programming language. For the moment, the codes and documentation are restricted to R, tough other open programming languages (such as Julia) might be considered in the future. mosscoder crustCover crustCover mosscoder fireStrat mounicm self-destruction Let R Scripts Kill Themselves mountainMath cancensus R wrapper for calling CensusMapper APIs mountainMath cmhc Wrapper for hack into CMHC data mountainMath dotdensity R package with convenience methods for multi-category dot density maps mountainMath pumf R package with convenience methods for working with StatCan PUMF data mountainMath rental-listings package to access rental listings data form a remote database mouse0 suicideProject movisens movisensxs-R2REST-Adapter mowequa imrchart Individuals and Moving Range Chart mpadge bikedata :bike: Load data from public hire bicycle systems mpadge distdecay R package for analysis of distance decay functions mpadge hotspotr 🔴 R package to compare spatial structure of hotspots with neutral models mpadge osmplotr R package to produce visually impressive customisable images from OpenStreetMap data mpadge paretoconv R package for convolution of Pareto distributions mpadge rdeps Automatically obtain source code for all dependencies of a given R package mpadge sftest mpadge sqlite3-test mpadge streetnets Extract OSM street networks mpadge tnorm R package to generated truncated normal distributions mpadge urbanplotr R package to produce visually impressive customisable images from OpenStreetMap data mpancia RxNormR An R interface to the RxNorm API. mpancia electioneeR mpancia ptRioReader A reader that adds support to ProjectTemplate for reading file formats supported by the rio package. mpancia rUMLS An R interface for the NLM's UMLS. mpascariu CoDa Forecast mortality using the methods of Compositional Data Analysis - R Package mpascariu LinearLink Derive age-specific death rates from life expectancy forecasts - R package mpascariu MortalityEstimate Indirect Estimation Methods for Measurement of Demographic Indicators - R package mpascariu MortalityLaws Fit and compare the most popular human mortality laws - R package mpascariu PasswordGen Generate secure passwords easy to remember - R package mpascariu SexGapForecast Forecast life expectancy and sex differences in mortality - R package mpascariu dxForecast Forecast the distribution of deaths - R Package mpascariu exForecast Collection of life expectancy forecasting models - R package 🚸 mpascariu pclm Estimating Smooth Distributions from Coarsely Binned Data - R Package mpascariu ungroup Estimating Smooth Distributions from Coarsely Binned Data - R Package mpastell Rpyplot R interface to matplotlib mpiccirilli Rlinkedin Dev version of access to LinkedIn API via R mpiccirilli weatheR R package to download, transform, analyze, and plot NOAA ISD weather data mpierrejean acnr mpierrejean jointSeg No description or website provided. mpierrejean jointSeg-1 No description or website provided. mpierrejean jointseg mpiktas acp mpiktas midasr R package for mixed frequency time series data analysis. mpiktas mqmod R package for estimating and forecasting moving quantile models mpiktas mqr R package for moving quantiles regression mpiktas retacoro Recover table given column and row sum totals mpkocher pbcommandR R interface for pbsmrtpipe workflow engine mpkocher smrtlink-system-stats SMRT Link System Stats (Unsupported) mplatzer BTYDplus R package for Customer Behavior Analysis mplatzer test.me No description or website provided. mplex multigraph multigraph: Plot and Manipulate Multigraphs in R mplex multiplex multiplex: algebraic tools for the analysis of multiple social networks mplourde ratingscluster No description or website provided. mplourde svgg mplourde swmmr mpmorley ExpressExtras mpru BIMEGA mps9506 watertools R package with typical functions used in my day to day work. :construction: mrJelmert equal-gain mrbcuda easingr Credit Easing Policy Tools mrbcuda pbo Probability of Backtest Overfitting mrbcuda stressr Fetch and plot financial stress index and components mrbcuda usfrbcp US Federal Reserve Bank Commercial Paper mrbcuda ustyc US Treasury yield curve data retrieval mrbub UKHR Automated UKHR Archive CSV Retrieval and Database builder mrc-ide buildr :construction_worker::package: Build packages on request mrc-ide context :recycle: Reproduce an environment mrc-ide didehpc :cloud::computer::cloud: Support for the DIDE cluster mrc-ide hhsurveydata Tools for processing data from Demographic and Health Surveys (DHS) and other household surveys mrc-ide odin ᚩ A DSL for describing and solving differential equations in R mrc-ide parrotmetric :bird::chart_with_upwards_trend::bird: Parametric plots in R (For teaching / R Book Club only!) mrc-ide provisionr :package::package::arrow_right::classical_building: Provision a library of R packages mrc-ide queuer :walking::walking::walking: Prototype general queue mrc-ide skygrowth Phylodynamic inference mrc-ide syncr :arrows_clockwise: R interface to rsync mrchypark N2H4 mrchypark decktaper mrchypark headless mrchypark krdata get data in korea mrchypark krlandprice mrchypark krlift 한국 승강기 현황 데이터 패키지 using r mrchypark krlift16 mrchypark proQuestionR share sessionInfo(), code, data for question mrchypark puppetr mrchypark smashr mrchypark tqk mrcllbr SoCoTools mrcreel soccer_data mrdevlar Hermes mrdevlar MscPM mrdrgz estRis mrdwab AMsnippets R function utility snippets I've written or collected mrdwab SOfun Functions I've written as answers to R questions on Stack Overflow mrdwab StataDCTutils R functions for parsing and working with Stata dictionary files mrdwab TDAtools mrdwab koboloadeR KoBo Toolbox offers a convenient way to collect data using web and mobile forms. This package facilitates the retrieval of data entered using these tools using the KoBo Toolbox API (v1). mrdwab mrdwabmisc Miscellaneous R functions, mostly for data processing mrdwab splitstackshape R functions to split concatenated data, conveniently stack columns of data.frames, and conveniently reshape data.frames. mre011 Rfarkle Functions for playing the game of farkle/greed in R mre011 Rnuemd Functions for Reading and manipulating Nuemd Reports mre011 Rpaychex Functions for custom Paychex Report mre011 Rqbase R interface to Quickbase API mre011 Rrenesan mre011 dupfindr Function for extracting duplicate entries from Data frame mre011 ggMosaic Mosaic Plot as Seen on datacamp mre011 mRe An R package for me, Michael Raymond Eubanks mre011 mRe_misc An R package for me, Michael Raymond Eubanks mre011 shinyCap Shiny and PostgreSQL data capture tool mre011 shinyMods A package for Misc Shiny Modules built into functions to call. mre011 sqlyr Apply sql writing and dropping functions with list of dataframes mrecos DistRegLMERR Logisitic Mean Embeddings Ridge Regression (LMERR) for the Distribution Regression problem. mrecos signboardr Extract text from sign board and tag as metadata mrepsilon PawelKawskiPackage Stock Analytics Package mrgsolve modhooks mrgsolve mrgsim Scripted simulation runs with mrgsolve. mrgsolve mrgsolvetk Tool Kit / Workflows for mrgsolve focused on QSP type modeling mrgsolve openmodel mrgsolve user_gallery mrhelmus FDapt No description or website provided. mrhelmus donut3 mrhelmus ieco mrhopko pivotTableFlavoR An R pivottable like package containing a gadget and shiny module among other things mrhopko pivotlike R pivot table like functions with shiny gadget and module mrhopko shinyVizModules Shiny Visualisation modules, gadgets and functions mrjoh3 c3 c3 HTMLWidget Ploting mrjoh3 pier HTMLWidget for d3pie javascript library mrke GADS R interface to the Global Aerosol Data Set Fortran program mrke NicheMapR R implementation of Niche Mapper software for biophysical modelling mrke bearded-dragon-DEB mrke invasives mrleth94 ST522ExamSteje14 mrm10 HHFindAgeProjectFinal Package-wcagepreds mrm10 Matt-Morris-Hutchin-Hill-Capital-Project mrm10 MattMorris18 mrm10 MattMorris18_Test No description or website provided. mrm10 finalprojectmrm10 mrmaxent maxnet An R package that implements much of the functionality of the Maxent Java application mrnvenkatesh ed_analysis mroberts stmBrowser Visualizations for the stm package mronkko matrixpls R package plspm mrosenblum AdaptiveDesignOptimizer Optimizes Adaptive Enrichment Designs mroughan LinePicking Numerical code for geometric probability problems, in particular density functions for the "line picking" problem. mrparker909 networkflowvis Package for visualizing network flow and volume. Uses tidyverse. mrpeverill ScoreSdlab Very provisional scoring syntax for psych measures. mrpsonglao WBdata360R R Wrapper for TCdata360 and Govdata360 platforms mrpsonglao data360r R Wrapper for TCdata360 and Govdata360 platforms mrrichowen snv.predict R package to predict snvs in single cell RNA-seq data mrslausen slausenR Watch mrubayet rDSI mruessler gpxmap Load and plot GPS data with R mruessler rephys An R package for the analysis of electrophysiological data. mryap csortb Ireland's Central Statistics Office (CSO) housing related data in R package mryap rtbdata mryap tempConvert My First R Package mrykinpavel yandexmarketr Yandex Market R Package ms609 ProfileParsimony Implements the profile parsimony approach of Faith & Trueman 2001 ms609 SlowQuartet Calculates the similarity of two trees based on the number of shared four-taxon subtrees ms609 Ternary Create ternary plots in R ms609 Tetrad Calculates the similarity of two trees based on the number of shared four-taxon subtrees ms609 TreeSearch Search for phylogenetic trees with custom optimality criterion ms609 inapplicable Logically consistent handling of inapplicable data in parsimony analysis ms609 tci Total Cophenetic Index of Mir et al. 2013 msabr027 WatsonML msaharia pincodes All India directory of PIN codes msaharia rsumma An R Package for Plotting and Analysis of SUMMA Inputs and Outputs msaidf myaddins msaidf robusta R package for easy reporting robust standard error in regression summary table msaltieri algotrading A library for algorithmic trading with R msaltieri alicetwist Alice Twist game implemented in R msaltieri enertools Data Mining & Risk Management Tools for the Energy Industry msaltieri passport Manage access credentials with R msaltieri termo Tools for Energy Risk Management & Optimizations msatyan RCExtension Simple R Extensions with C language msaul msaul Michael C. Saul's Personal R Package msberends certedata :microscope: R package used by data analysts at Certe, a medical laboratory in the Netherlands. msberends shinyTextCompare R package (Shiny app) to compare text files using drag and drop mschilli87 testCovrVsLintr Minimal R package demonstrating https://github.com/jimhester/covr/issues/253 mschubert arraytools R package for handling arrays in a consistent manner mschubert bhtsneR R package for Barnes-Hut t-SNE mschubert clustermq R package to send function calls as LSF/SGE/SLURM jobs mschubert narray R package for subset- and name-aware array utility functions mschubert r-h5store R package for easy loading and saving of HDF5 objects mschwenzer reco msenn sihfapi msereno lira R-package for Bayesian linear regression in astronomy msettles rSFFreader R packages for flow gram based sequence data Roche 454 and Ion Torrent msfuji geomsort ggplot2 extension for per-group-sorted plot mshakya Phamer mshasan OPWeight An R package to perform optimal p-value weighting with independent information mshasan OPWpaper An R package to reproduce the results and figures from the simulations and data described in the optimal p-value weighting with independent information paper mshasan OPWpaper1 An R package to reproduce the results and figures from simulations and data described in the Optimal Pvlaue weighting Paper mshasan empOPW An R package to perform data-driven optimal p-value weighting with independent information msjgriffiths rAthena dplyr backend for Amazon Athena mskcc facets Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing. mskilab Flow R-based genomics workflow management mskilab JaBbA MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data. mskilab bamUtils mskilab ffTrack GenomicRanges based R class for fast, out-of-core memory access and storage of numeric and character data that is a function of genomic position. mskilab fish.hook R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates. mskilab fishHook R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates. mskilab gChain R class for representing composable syntenic mappings between coordinates of 'omes and allowing nimble lift-over of genomic features and signals through these mappings within a GenomicRanges based framework. mskilab gGnome Reference-based graph representation of structurally altered genome employing GenomicRanges framework. mskilab gTrack R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework mskilab gUtils Utility functions to extend and optimize GenomicRanges functionality. mskilab skidb Reference data utilities for mskilab mskilab skitools General purpose mskilab R tools mskyttner rbarcode mskyttner swedishbirdrecoveries Package in R for Swedish Bird Recovery data and visuals mskyttner swedishbirdtrends Swedish Bird Trends Population Data And Diagrams mslegrand pegr A package for a PEG parser in R (Parsing Expression Grammar parser) mslegrand pointR A shiny-based IDE for R scripting using svgR mslegrand shinyDMDMenu Shiny package for a mulilevel menubar mslegrand shinyMultilevelMenu Shiny package for a mulilevel menubar mslegrand svgR An R package to generate SVG markup msmall318 Boots This repository is designed for analytic development in fulfillment of requirements for OPER782 at AFIT as well as augmenting thesis presentation with real-time forecasting, plotting, and data outputs. msmallegan fcstats msmarchena SCperf The package implements different inventory models, the bullwhip effect and other supply chain performance variables mspeich forhytm A dynamic water balance model for numerical experiments msperlin BatchGetSymbols Repository for CRAN package BatchGetSymbols msperlin GetDFPData Repository for package GetDFPData msperlin GetHFData Repository for CRAN package GetHFData msperlin GetITRData Development version of GetITRData msperlin GetLattesData R package for reading data from Lattes msperlin GetTDData msperlin Rmrt Repository for tex example of Rmrt msperlin RndTexExams R package for building random exams msperlin predatory msporer RTutorEnvironmentalRegulation mstaniak AnalizaZanieczyszczen Pakiet udostępniający funkcje służące do analizy danych o zanieczyszeniu powietrza. mstaniak comicbookshows Set of functions for shiny app about comicbook shows mstaniak giosDownloader Package that helps get air pollution data from GIOŚ archives (powietrze.gios.gov.pl) mstaniak kendallRandomPackage Process and visualize polish air pollution data, fit Kendall random walk limit distributions mstanley2017 CourseraAssignment mstanley2017 CourseraAssignment3 mstasinopoulos GAMLSS-Additive-terms-1 Extra additive terms mstasinopoulos GAMLSS-Distibutions The distribution package of GAMLSS mstasinopoulos GAMLSS-Finite-Mixtures Finite mixture and random effects functions mstasinopoulos GAMLSS-data Contains all data used in GAMLSS book and demos mstasinopoulos GAMLSS-inflated-and-adjusted Fitting zero and one inflated or zero adjusted distributions mstasinopoulos GAMLSS-original mstasinopoulos GAMLSS-truncation Functions to allow truncating distributions mstasinopoulos GAMLSS-utilities Extra GAMLSS functions mstellwa marklogic-swe-riksdag-open-data mstellwa rfml MarkLogic NoSQL Enterprise database server in-database analytics for R mstrazar csDEX Condition-specific differential exon expression statistical tests mstrimas auk eBird Data Processing with AWK mstrimas auklet Analysis and Visualization of Your eBird Data mstrimas camtrapr Camera Trap Photo Processing mstrimas foofactors What the Package Does (one line, title case) mstrimas krsp Working with the Kluane Red Squirrel Project Database mstrimas metacapa Calculate the Metapopulation Capacity of Landscapes mstrimas prioritizr Systematic Conservation Prioritization with Integer Linear Programming in R mstrimas protectr Protected Area Design with Gurobi in R mstrimas protectr-legacy Protected Area Design with Gurobi in R mstrimas rawk An R interface to awk for manipulating eBird data mstrimas resdesignr Systematic Reserve Design in R mstuart2097 Lab5 mstuart2097 STAT585Final msuchard MultiBD msuefishlab eodplotter A pipeline tool for EOD data msuefishlab shinyorthologs Shiny app to look at orthologs msuefishlab tdmsreader A LabVIEW tdms file reader msuefishlab tdmsviewer Shiny app to view TDMS data msuzen Julia Julia: Fractal Image Data Generator msuzen R1magic R1magic: Compressive Sampling: Sparse signal recovery utilities msuzen isingLenzMC isingLenzMC: Monte Carlo for Classical Ising Model (with core C library) mt-climate-office mcor The core R package for the Montana Climate Office. mtalluto agbm AGBM R Package mtalluto mbm Multifaceted Biodiversity Modelling mtalluto mbmtools Support tools for multifaceted biodiversity modelling mtalluto tree_seedling_metamodel Code repository for model integration with experimental tree seedling data mtennekes tabplot R package for tableplot visualisation mtennekes tmap R package for thematic maps mtennekes tmaptools Tools for thematic maps mthh gepaf Encode and decode the Google Encoded Polyline Algorithm Format mtloots alR Arc lengths of statistical functions mtmcgowan PolySNPclust An R package for calling polyploid SNP chip data mtmcgowan Test3 mtmorgan IPCMutex An R package for Boost interprocess mutual exclusive locks mtmorgan Snowfall Demo package developed at U of Idaho 2017 mtmorgan TENxGenomics Interface to 10x Genomics' 1.3 m single cell data set mtna rds-r R library facilitating access and integration with Rich Data Services data and metadata (documentation) delivery API. mtna rrds mtorchiano effsize Effsize - a package for efficient effect size computation mtorchiano lmPerm Permutation Tests for Linear Models mtorres123 ramar mtorres123 remdat mtoto Assignment2 mtoto SparkRhelpers A helper package for SparkR that contains simple wrapper functions to facilitate common computations not explicitly covered by the original SparkR API. mtp22peng mypack mtpatter nb2 neighbor-based bootstrapping algorithm mtreadwell alterryx An API Client for the Alteryx Gallery mtrw R_packages mtrybulec gravclust Gravitational data clustering mtrybulec interviewer interviewer - questionnaires for computer-aided interviewing using R and Shiny mtrybulec life Conway's Game of Life in R mtrybulec weighter Iterative data weighting in R. mtseman rldap R functions for administering Groups and Users on an LDAP server mturchin20 bmass Bayesian multivariate analysis of summary statistics mu2013 KGode Kernel based Gradient matching for parameter inference in ordinary differential equations muc-fluechtlingsrat r-eurostat-refugees r project using https://github.com/rOpenGov/eurostat , to get and visualize asylum data from eurostat mucun1988 cm self R package mucun1988 dmdFrcstr demand forecater mucun1988 jtf jet forecaster muellermarianne iarm Item Analysis in Rasch Models muffin1974 lobster Useful functions to play around with lobster data muffin1974 lykke Extracta Data from the Lykke API using R muffin1974 privtools Collection of private useful tools muffin1974 vutils R packages containing personal utility functions mugiro elm mukhes3 AggregationMethods Various consensus and correlation clustering algorithms mukul13 RCloudConvert R package to convert file format using Cloud Convert API mukul13 REchoNest R package to access Echo Nest API mukul13 ROpenWeatherMap R package to get weather data using OpenWeatherMap API mukul13 RYandexTranslate R package to translate text using Yandex Translate API mukul13 rechonest R Interface to access Echo Nest API mukul13 rword2vec R Interface to Google's word2vec mukundhu application mukundhu sampleapp multiphrenic IncentiveAnalysis Tools for Incentive Analysis and Reward Modeling in R multiphrenic obfuscateR Data Masking Package for R mummlab ARQiv mundl readhyd mundl smires Science and Management of Intermittent Rivers and Ephemeral Streams mupini changelinkr Get latest currency rates from http://change-link.com/ muppetjones remcolor A package for generating color palettes and gradients in R. murodzhon PCSF murrn Average Counting average age using R muschellij2 ANTsR_norgl ANTsR without the RGL muschellij2 ENARSC2015 ENAR Short Course muschellij2 I2C2 R package for image intraclass correlation (I2C2) muschellij2 State_of_The_Union_Neuroimaging_in_R muschellij2 WhiteStripe WhiteStripe Package muschellij2 afnir Wrapper Functions for 'AFNI' software in R muschellij2 biobankr UK Biobank Acceration Analysis muschellij2 brainR BrainGL R Package muschellij2 caminor R Port of Camino (experimental) muschellij2 cifti R toolbox for CIFTI files muschellij2 clusterRundown R Package for Rundown of Cluster muschellij2 ct.malf.templates Templates for CT data muschellij2 dcm2niir R Package Container for dcm2nii muschellij2 dcmniir R Package Container for dcm2nii muschellij2 dcmsort Sort DICOM images muschellij2 dcmtk Wrapper for 'DICOM' Toolkit ('DCMTK') muschellij2 dhs DHS API for R muschellij2 diffr R package for creating code differences in JavaScript based on codediff.js muschellij2 do-shiny-server muschellij2 drammsr Create R package for DRAMMS muschellij2 dtitk R Port of dtitk muschellij2 extrantsr R Package to build on ANTsR muschellij2 fedreporter NIH Exporter Downloader muschellij2 fragmentation Fragmentation Methods for Accelerometry Data muschellij2 freesurfer Freesurfer Port to R muschellij2 fslr FSL-R Interface package muschellij2 gcite updated google citation package muschellij2 ggneuro R package for plotting images using ggplot2 muschellij2 ghtravis GitHub Travis R package muschellij2 gifti GIFTI package for R muschellij2 glassdoor R Glassdoor API muschellij2 gluc Reading/writing glucose data muschellij2 googleCite Google Citation Scraper muschellij2 greedyreg Greedy Registration in R muschellij2 hcp Human Connectome Project Interface with R muschellij2 ichseg ICH Segmentation of CT scans muschellij2 itksnapr R Package to Wrap ITK-SNAP muschellij2 jhudsl Johns Hopkins Data Science Lab muschellij2 kirby21 Kirby21 R Data Package muschellij2 kirby21.asl muschellij2 kirby21.base muschellij2 kirby21.det2 muschellij2 kirby21.dti muschellij2 kirby21.flair muschellij2 kirby21.fmri muschellij2 kirby21.mt muschellij2 kirby21.smri muschellij2 kirby21.survey muschellij2 kirby21.t1 muschellij2 kirby21.t2 muschellij2 kirby21.vaso muschellij2 kirby21_scan_1 Kirby 21 data for T2w, MPRAGE, and FLAIR data for scan 1 muschellij2 kirby21_scan_2 Kirby 21 data for T2w, MPRAGE, and FLAIR data for scan 2 muschellij2 kirby21_scanner Kirby 21 Accessor package muschellij2 latexreadme Parses Github README so it can "render" LaTeX equations. muschellij2 leanpubr Leanpub API muschellij2 lungct Segmentation and Analysis of Lung CT scans muschellij2 malf.templates Templates from Multi-Atlas Label Fusion Challenge for MICCAI Edit Add topics muschellij2 mass.templates Templates from Multi-Atlas Skull Stripping (MASS) muschellij2 massr MASS for R muschellij2 matlabr R Package For Calling Matlab Through System muschellij2 mrtrix Port of MRTrix software muschellij2 msdata Open Multiple Sclerosis Magnetic Resonance Imaging Data muschellij2 msseg MS Lesion Segmentation Package muschellij2 muschflow Workflow for John 'Muschelli' Packages muschellij2 muschmisc Miscellaneous functions I use muschellij2 muschpack Build Status of All John 'Muschelli' Packages muschellij2 neurobase Neuroconductor Base Package muschellij2 neuroc.deps Parses Dependencies for GitHub Packges muschellij2 neurocInstall neuroconductor installer package muschellij2 neuroconductor neuroconductor installer package muschellij2 neurohcp Human Connectome Project Interface with R muschellij2 neurometrics Calculates Metrics Relevant to Neuroimaging muschellij2 neurovault Neurovault Database API Access in R muschellij2 nitrc R Package to interface with NITRC muschellij2 oro.nifti Branch of oro.nifti, adding in fslr helper functions muschellij2 oslerInstall Installer for OSLER repository muschellij2 papayaWidget Widget for papaya! muschellij2 papayar Wrapper for Papaya viewer to R muschellij2 processVISION muschellij2 rcamino R Port of Camino (experimental) muschellij2 rdcm2niix Compiled Version of dcm2niix for R muschellij2 robex Robust Brain Extraction muschellij2 rscopus muschellij2 smallpdf smallpdf package muschellij2 smri.process SMRI processing muschellij2 spm12r SPM12 R package muschellij2 ssgraph Generalized Signal Subgraph Classifier muschellij2 stapler Simultaneous Truth and Performance Level Estimation '(STAPLE)' muschellij2 statamd Helper Functions for using RMarkdown and Stata muschellij2 testdat BLAH muschellij2 testerbug muschellij2 testmatrixstats muschellij2 travisrgl Test Case for 'RGL' musicman3320 m2r Macaulay2 interface for R musikutiv tsTools mustafaascha mustafamisc My miscellaneous functions and resources mustafaascha nisr Easily read National Inpatient Sample data into R musto101 wilcox_R A package which utilises the functions from Rand Wilcox mutecypher KewlNewPkg My first package mutolisp seqParser DNA sequence parser muttineni2020 PredictWord mutualism sciplot muuankarski countrycode.multilang muuankarski edu muuankarski json_test muuankarski kaRski Selected functions to facilitate reproducible analysis with R, knitr and pandoc muuankarski karskidocs muuankarski karskitools muuankarski kazdoc muuankarski r.eusilc R-package for merging eu-silc cross-sectional and longitudinal raw .csv datasets muuankarski regioncoderus muuankarski regions muuankarski russian-regional-data muuankarski tidymetadata Tidymetadata-package provides a technical backbone for tidy metadata logic to work with social survey data using tidyverse tools. muuksi bici muuksi foofactors Make Factors Less Annoying mvanhala B2R R interface to the Backblaze B2 API mvaniterson DNAshape mvaniterson Leiden450K Leiden450K contains a couple of functions for preprocessing of Illumina Human 450K array data, such as reading of idat files in parallel, filtering on probes and normalization. mvaniterson Rhcpp A fast R implementation using Rcpp based on the original matlab HCP method for Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge by Mostafavi et al. PLOSone (2013).). mvaniterson bacon Watch mvaniterson miRNAmRNA mvaniterson wbccPredictor predict white blood cell count composition in whole blood derived DNA methylation or RNAseq data mvanwyk logical-itemset-miner An R implementation of Logical Itemset Mining mvanwyk robot-data-scientist mvattulainen metaheur Metaheuristic Optimization Framework for Preprocessing combinations mvattulainen preprocomb Tools for Preprocessing Combinations mvattulainen preprosim Lightweight Data Quality Simulation mvattulainen preproviz Tools for Visualization of Interdependent Data Quality Issues mvdalab mvdalab A laboratory for multivariate data analysis and research mverouden old_brapi_wur Modification of previous brapi implementation to use multicrop databases mverouden wurmc R package for scanning, correcting and grading multiple choice exams at Wageningen University and Research mvevans89 mvevansPack mvevans89 myFunctions mvicentesanchez paqueterutad mvkorpel pickURL Extract URLs and email addresses from text using R mvogel78 childsds Calculation of standard deviation scores adduced from different growth standards (WHO, US, UK, Germany, Italy, China, etc). Therefore, the calculation of SDS-values for different measures like BMI, weight, height, head circumference, different ratios, etc. are easy to carry out. Also, references for laboratory values in children are available: serum lipids, iron-related blood parameters. mvuorre bestan Approximating the t-test with bayesian estimation using Stan mvuorre bmlm Bayesian multilevel mediation models in R mvuorre brmstools Helper functions for brmsfit objects mvuorre projector r package for project management mvuorre psychLit R data package containing metadata of selected journals in the Psychological literature mvuorre tmasc R data package for text mining altered states of consciousness mvuorre vmapp2017 mvuorre vmisc R package for miscellaneous functions and plotting themes mw201608 NetWeaver NetWeaver: Graphic Presentation of Complex Genomic and Network Data Analysis mw201608 msigdb MSigDB gene sets mwaldstein RspaceXstats R access to the spacex-api data source mwaldstein edgarWebR mwdavids familyNetworks R package for constructing family networks following the naming convention used in the Philippines. Described in Cruz, Labonne, and Querubin (2016). mwentz93 RTutorWallStreet mwentz93 RTutorWallStreet_old mwesthues sspredr Single-Step Prediction mwilliams2921 jekyllr No description or website provided. mwillumz blog mwillumz brfss R brfss package mwillumz factfindr mwillumz iris mwillumz tiger2r mwmclean RefManageR R package RefManageR mworkentine mattsUtils A collection of helper function for working primarily with phyloseq and DESeq mworkman13 CircoHicSeq mworkman13 HiCAGE mwpennell acid A-Ci Database mwpennell arbutus Assessing the adequacy of phylogenetic models of quantitative trait evolution mwpennell capwire capwire r pacakge mwpennell geiger-v2 A suite of methods and models for studying evolutionary radiations mwtoews seas seas package for R: Seasonal analysis and graphics, especially for climatology mxjki EfficientMaxEigenpair mxjki GlobalMaxEigenpair my1120 Hurricane myeomans DMfinal myeomans DMproject myeomans DTMtools Extracting features from text myeomans Tire-Pressure myeomans discstats myeomans politeness myeomans refpo-code myeomans stmfix myllym GET Global Envelope Tests myllym marksummary An R library for estimating summary functions for marked point patterns myllym spptest 'Spatial point pattern testing' (alias 'Surprisingly powerful and practical testing') library for R. mynameisvinn rstae unofficial r client for the stae api myoung3 regionalkrig myoung3 regionalkriging mysteryduck test myungkwan0201 NAME NAME myungkwan0201 Pratice my first git myungkwan0201 firstplease2 mzager R mzager nanostring mziegler GABIants R package for Global Ant Biodiversity Informatics mzinkgraf ConsensusCoExpression mzinkgraf StemCurve mzinkgraf treeGO mzytnicki srnadiff n-mounier bGWAS R package for Bayesian Genome-Wide Association Study n-s-f mockery A mocking library for R. n-s-f ppower n-s-f proctor Lightweight & flexible test runner for R n-s-f testthat-starter Repository to get started with automated testing in R. n-swarup nsLib Library of fuctions, etc that I use n3xtchen RL1b n8thangreen ChlamydiaTSB n8thangreen HCAI_R_code n8thangreen IDEAdectree IDEA project cost-effectiveness analysis decision tree model n8thangreen LTBIscreen n8thangreen LTBIscreeningproject n8thangreen QALY :green_heart: :yellow_heart: :heart: An R package to calculate QALY gains with discounting and inflated costs n8thangreen STIecoPredict Preparatory functions for multi-level regression and post-stratification (MRP) at the Local Authority level, applied in an STI context. n8thangreen Tendai-TB-sim n8thangreen VANTDET :truck: Probabilistic decision tree cost-effectiveness analysis. n8thangreen activeTB n8thangreen censussexbyagebycobbyethnicgroupbyyoamergedla n8thangreen kitten n8thangreen plotCostEffectiveness Plotting cost-effectiveness analysis output data. n8thangreen treeSimR An R package for easy, robust forward simulating decision trees, calculating cost-effectiveness and PSA. nFrechen RgetDWDdata R function to download data from the DWD (german weather service) nabilabd hybridSA Hybrid Source Apportionment nabilabd shiny_sandbox nachocab clickme An R package to create interactive plots nachocab df2json An R package to convert dataframes to JSON nachocab examplerefclass nachocab photonic nachocab try_git nachti STATtools Tools of Statistics Austria (STAT) nachti firstpackage R-Package structure using Rcpp and roxygen2 nacnudus ggstraw geom_straw for ggplot2 nacnudus lexl An R package to tokenise Excel formulas nacnudus nzbabynames An R package containing baby names from New Zealand 1954-2016 nacnudus nzcensus2013 An R package to distribute New Zealand 2013 census data in a convenient form nacnudus nzcrash R package to distribute New Zealand crash data in a convenient form nacnudus nzlifetables An R package to distribute New Zealand cohort life tables in a convenient form nacnudus nzpullover New Zealand road policing data nacnudus tidyxl Read untidy Excel files in R nacnudus uncertainty nacnudus underground An R package to distribute London Underground performance data in a convenient form nacnudus unpivotr Unpivot complex and irregular data layouts in R nadasal rtriangle nadasal sdnada nadiadavidson goseq nadinesk proPubBills naef-lab BiomartFunctions naef-lab f24 Test a vector of values for rhythmicity naikai fisseq In vivo sequencing naikai sake sake naimmahi exploratoryPlots An R package to create complex heatmap and PCA plots. nakamichiworks gistrAddin Create Github gist in RStudio nakamichiworks rcalil An API wrapper for Calil nalimilan R2HTML R2HTML: HTML exportation for R objects nalimilan logmult R package for log-multiplicative models, including association models namanpaul hw08 nampho2 xwas X-Wide Association Analyses namsso practice my first git package namtranaon week4course3 week4course3 nancy-zhang demoLinreg R integration demo nancyorgan demogromatics Demographic analysis and mapping nancyorgan fips.tools FIPS conversion tools nandadorea vetsyn A package for syndromic surveillance. nandy006 smallarea Ab R package for Small Area Estimation nannikoski rankhazard nano-optics dielectric physical constants and dielectric functions commonly used in optics, plasmonics nano-optics mie Mie theory for electromagnetic scattering by spherical objects nano-optics planar Electromagnetic fields near planar interfaces. naokiookura Trillion naokiookura rquants Tools to sumirate your strategy for FX,CFD easier naolsen simm.fda Simultaneous inference for misaligned multivariate functional data nashjc FloatTest Floating point tests for R nassimhaddad firstnamesbe an R package to analyze belgian first names natashamachado1 R-course nate-d-olson sapkotaUtils R package with utilities for Sapkota Lab nate-d-olson silva123.1MgDb SILVA SSR rRNA release 123.1 Annotation Data nateDolson test nateaff ecomplex R package for computing the epsilon-complexity of a time series. nateaff eeg-complex Analyses, and text from my master's thesis: Improvement of the Estimation of Epsilon-Complexty and an Application to Seizure Prediction nateaff lego-lda Topic modeling the Lego sets https://nateaff.github.io/lego-lda/ nateaff legolda Lego color themes with topic models https://nateaff.github.io/legolda/ nateaff tssegment Segment and classify a time series based on feature change points. nathan-russell news http://stackoverflow.com/questions/43845171/how-to-create-a-news-function-for-your-own-r-package nathaneastwood employmentProspects nathaneastwood gghalfnorm A wrapper around the halfnorm function from the faraway package using the ggplot2 API nathaneastwood nlstimedist Non-linear model fitting of time distribution of biological phenomena nathaneastwood waterflow An R solution to the Twitter Waterflow Problem nathanesau MSM Implementation of multiple state models from Actuarial Mathematics for Life Contingent Risks nathanesau StocVal Stochastic Valuation of Embedded options in pension plans. R Port of https://www.soa.org/research/research-projects/pension/research-catalogue-survey.aspx nathanesau ULins Produces information for Universal Life insurance policies. Based on MLC syllabus nathanesau coord Sample coordination in R nathanesau lmodels Loss Models Functions nathanesau m4fe Models for Financial Economics. European, American and Asian Option Pricing (using Binomial Trees), Interest Rate Models, Methods for Solving Partial Differential Equations. nathanesau makehams Implementation of Ultimate Select Survival Model in Actuarial Mathematics for Life Contingent Risks (DHW) nathanesau stocann Stochastic Interest Rate Models for Life Annuities nathanesau stocins Stochastic Interest Rate Models for Life Insurance nathanfr helpfulRFunctions Just a package of functions I use nathania dummy Playground for us to corrupt in new and unexpected ways nathaniel-mahieu centWaveP A fork of centWave - LC/MS peak detection with wavelets. nathaniel-mahieu mz.unity mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data nathaniel-mahieu warpgroup The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected. nathanieltwarog braidReports Contains functions for visualizing and analyzing combined action response surfaces nathanieltwarog braidrm BRAID combination response analysis nathanlazar BaTFLED Bayesian Tensor Factorization Linked to External Data nathanlazar BaTFLED3D Bayesian Tensor Factorization Linked to External Data (three-dimensional version) nathanlazar BaTFLED_test nathant23 Frequencies R Functions to create frequency tables with counts and percentages. natoyaj TestPackage naturalsmen Backtest backtest system naturalsmen PerformanceAnalytics No description or website provided. naturalsmen PerformanceAnalytics2 gsoc2016 naturalsmen blotter No description or website provided. naturalsmen firstRepository naturalsmen quantstrat No description or website provided. natydasilva PPforest natydasilva PPforest2 natydasilva PPtreeExt PPtree algorithm extensions natydasilva PPtree_modify natydasilva West-nile-virus-msq natydasilva metaupdate natydasilva metawRite navarro-gonzalez DA.MRFA Dimensionality Assesment using MRFA navarro-gonzalez parallelMRFA R package for performing Parallel Analysis using MRFA (testing version) nawendt gribr GRIB interface for R using ECMWF ecCodes nawendt rGRIB GRIB interface for R using ECMWF GRIB API nayanj NPdata Functions to Automate Downloading Financial and Economic Data Available Through Different Official Government of Nepal Websites nbbrd jdemetra-jdlight nbenn cellr nbenn grader nbenn infx Access to InfectX/TargetInfectX screening data from R nbenn roxythat nbenn s3vec Make lists of s3 objects behave like vectors of objects nbenn secretr nbenn singleCellFeatures nbenn sqlr CREATE sql from R nbgallery rpki ncarchedi howbigismypackage Counts the total number of lines of R code in an R package. ncarchedi iMatchIt An interactive wrapper for the MatchIt R package. ncarchedi omnitest Temporary repo to explore improved utilities for swirl::omnitest. ncarchedi simdata R package that makes simulating multivariate normal data simple and fun. ncarchedi swirl_OLD We've moved! See README below for more info. ncchung jaccard Statistical test of similarity between binary data using the Jaccard/Tanimoto coefficients ncchung jackstraw Statistical Inference using Latent Variables ncchung jaws Jackstraw Weighted Shrinkage Methods ncchung svdvis Singular Value Decomposition Visualization ncchung tanimoto nchaichi TF nchlis pca.utils R package for easy plotting of PCA results nclark-lab RERconverge Analysis of convergence between organismal traits and DNA/protein sequences ncordon imbalance ncss-tech aqp Algorithms for Quantitative Pedology ncss-tech sharpshootR Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey. ncss-tech soilDB soilDB: Simplified Access to NCSS Soil Databases ncss-tech soilReports container for soil data summary, comparison, and evaluation reports used mainly by NRCS staff nctingwang merDeriv For development of merDeriv package ncullen93 MetaNetR Statistical Analysis and Visualization of Hierarchical Meta-omic Networks ncullen93 bctR Brain Connectivity Toolbox in R ndbrown6 CNtu ndbrown6 CNu ndbrown6 GAP Genome Alteration Print ndbrown6 voodoo ndesmo rquery Simply auto-cached database queries with R ndiquattro quatts A collection of functions for Cognitive Psychology research ndiquattro redditR API wrapper for reddit.com ndow-wisr rNDOW An R package for NDOW ndow-wisr wildlife_tools An R package for NDOW ndp32 nikor ndphillips CompetitiveBart ndphillips FFTrees An R package to create and visualise fast-and-frugal decision trees (FFTs) ndphillips ShinyPsych A collection of psychology experiments programmed in Shiny ndphillips VisualResume An R package for creating a visual resume ndphillips fft Fast and Frugal Trees ndphillips masters-thesis-2016 ndphillips rpresentations ndphillips yarrr An R package for conducting all sorts of R piratery ndukler experimentalDataTools Some tools for handling data coupled to experimental design information ndukler flexHMM An R package for flexible HMM development ndukler tkSim Kinetic transcript model simulation and inference package neale-eldash neale FUNCTIONS I HAVE DEVELOPED FOR PERSONAL USE nealrichardson acs Unofficial "fork" of the 'acs' R package nealrichardson httpcache HTTP query cache for R nealrichardson httptest A Test Environment for HTTP Requests in R nealrichardson pivotaltrackR R Client for Pivotal Tracker API nealrichardson skeletor An R Package Skeleton Generator nealrichardson useRsnap An R Client for the 'Usersnap' API nebulae-co clouds Non-parametric clustering for ECDFs nebulae-co colmaps colmaps nebulae-co homicidios Data containing the yearly population, homicedes and homicide rate of the 1122 colombian municipalities for the period from 1990 to 2013. nebulae-co saber Saber data. nedlee918 rIMGPO Bayesian Optimization with Exponential Convergence neellab simem Code for the siMEM algorithm for predicting context-specific essentiality from functional (shRNA, CRISPR/Cas9) screens. neemtreeparrot deebee Make Database connectivity simple neemtreeparrot tidbitr Make Data Analysis Simple neerajdhanraj PSF PSF: Algorithm for Pattern Sequence Based Forecasting neerajdhanraj PredictTestbench PredictTestbench: Test Bench for Comparison of Data Prediction Models neerajdhanraj imputePSF imputePSF: Impute Missing Data in Time Series Data with PSF Based Method neerajdhanraj imputeTestbench Test Bench for Missing Data Imputing Models/Methods Comparison neerajdhanraj neerajbokde.github.io nehaabraham causalMGM nehiljain genewiseR neilcurrie mscfootballbetting nenaoana SetMethods Development version of R package SetMethods nephantes debrowser_bioconductor_release nerdville NWMLF nerdville finML nerdville finML_Base netskink CSJFD networkgroupR fastnet An implementation of algorithms simulating networks and their most relevant metrics. neumannd riverdata a simple R package to read some river runoff and river nutrient load data neumannd riverdata.dirty add-ons to riverdata - but somehow 'dirty' ... neumanrq ActiveRcord Experimental bindings on top of RPostgreSQL following the ActiveRecord pattern heavily inspired by the API of ActiveRecord from Ruby on Rails 💎 neumanrq activercordpg neumanrq fairreviewers R 📦 for formalizing and balancing reviewer strictness in rating processes ⚖️ neurobat homeR An R extension for building physics neuroconductor-devel ANTsR neuroconductor-devel DensParcorr neuroconductor-devel EveTemplate neuroconductor-devel I2C2 neuroconductor-devel ITKR neuroconductor-devel MNITemplate neuroconductor-devel MRIcloudT1volumetrics neuroconductor-devel PGICA neuroconductor-devel RAVEL neuroconductor-devel ROpenCVLite neuroconductor-devel Rvision neuroconductor-devel WhiteStripe neuroconductor-devel afnir neuroconductor-devel cifti neuroconductor-devel dcemriS4 neuroconductor-devel dcm2niir neuroconductor-devel dti neuroconductor-devel extrantsr neuroconductor-devel fmri neuroconductor-devel freesurfer neuroconductor-devel fslr neuroconductor-devel ggBrain neuroconductor-devel ggneuro neuroconductor-devel gifti neuroconductor-devel hcp neuroconductor-devel ichseg neuroconductor-devel itksnapr neuroconductor-devel kirby21.asl neuroconductor-devel kirby21.base neuroconductor-devel kirby21.det2 neuroconductor-devel kirby21.dti neuroconductor-devel kirby21.flair neuroconductor-devel kirby21.fmri neuroconductor-devel kirby21.mt neuroconductor-devel kirby21.smri neuroconductor-devel kirby21.t1 neuroconductor-devel kirby21.t2 neuroconductor-devel kirby21.vaso neuroconductor-devel lungct neuroconductor-devel malf.templates neuroconductor-devel mimosa neuroconductor-devel neurobase neuroconductor-devel neurocInstall neuroconductor-devel neurohcp neuroconductor-devel oasis neuroconductor-devel oro.asl neuroconductor-devel oro.dicom neuroconductor-devel oro.nifti neuroconductor-devel oro.pet neuroconductor-devel papayar neuroconductor-devel rcamino neuroconductor-devel robex neuroconductor-devel smri.process neuroconductor-devel spant neuroconductor-devel spm12r neuroconductor-devel spotgear neuroconductor-devel sublime neuroconductor-devel waveslim neuroconductor ANTsR neuroconductor DensParcorr neuroconductor EveTemplate neuroconductor I2C2 neuroconductor ITKR neuroconductor MNITemplate neuroconductor MRIcloudT1volumetrics neuroconductor PGICA neuroconductor RAVEL neuroconductor RNifti neuroconductor ROpenCVLite neuroconductor Rvision neuroconductor WhiteStripe neuroconductor afnir neuroconductor brainR neuroconductor cifti neuroconductor dcemriS4 neuroconductor dcm2niir neuroconductor dcmsort neuroconductor dti neuroconductor extrantsr neuroconductor fmri neuroconductor fmriqa neuroconductor freesurfer neuroconductor fslr neuroconductor ggBrain neuroconductor ggneuro neuroconductor gifti neuroconductor hcp neuroconductor ichseg neuroconductor itksnapr neuroconductor kirby21 neuroconductor kirby21.asl neuroconductor kirby21.base neuroconductor kirby21.det2 neuroconductor kirby21.dti neuroconductor kirby21.flair neuroconductor kirby21.fmri neuroconductor kirby21.mt neuroconductor kirby21.smri neuroconductor kirby21.t1 neuroconductor kirby21.t2 neuroconductor kirby21.vaso neuroconductor lungct neuroconductor malf.templates neuroconductor mass.templates neuroconductor medals neuroconductor mimosa neuroconductor neurobase neuroconductor neurocInstall neuroconductor neurohcp neuroconductor neuroim neuroconductor neurovault neuroconductor niftir neuroconductor oasis neuroconductor oro.asl neuroconductor oro.dicom neuroconductor oro.nifti neuroconductor oro.pet neuroconductor papayar neuroconductor rcamino neuroconductor robex neuroconductor shrinkR neuroconductor smri.process neuroconductor spant neuroconductor spm12r neuroconductor stapler neuroconductor sublime neuroconductor waveslim neurodata R-RerF This is the R implementation of Randomer Forest. neurodata fmriutils A package for loading, visualizing, and interacting with basic fMRI derivatives. neurodata fselect package for dimensionality reduction under supervised data scenarios neurodata graphstats A package for graph statistics neurodata lol package for dimensionality reduction under supervised data scenarios neurodata mgc R package for MGC code neurodata subgraphing Our code and progress for subgraphing. neurodata wssg Our code and progress for weighted signal subgraphing. neuropsychology neuropsychology.R An R Toolbox for Psychologists, Neuropsychologists and Neuroscientists. neuropsychology psycho.R Efficient and Publishing-Oriented Workflow for Psychological Science nevrome Rsmmry R API to access the SMMRY web service nevrome c14databases R Package - Download and Prepare C14 Dates from Different Source Databases nevrome mytestpkg nevrome rdoxygen R package for the automatic creation of doxygen documentation for source code in R packages. newOldBay817 PostGresPacks nexModeling ddd R package for the Distance Distribution Dynamics (ddd) hydrological model. nexModeling dddCelerity R package celerity for the model ddd nexModeling dddEvapotranspiration R package Evapotranspiration for model ddd nexModeling dddGroundwater R package Groundwater for the model ddd nexModeling dddModel R package model for the model ddd nexModeling dddPrecipLZ R package PrecipLZ for the model ddd nexModeling dddQ get runoff obs nexModeling dddScaOb get the snow coverage observation nexModeling dddSnow R package Snow for the model ddd nexModeling dddSoilDischarge R package soil discharge for the model ddd nexModeling dddSoilMoisture R package Soil Moisture for the model ddd nexModeling dddSoilWater R package soil water for the model ddd nexModeling dddTempLZ R package TempLZ for the model ddd nexModeling dddUH R package UH for the model ddd nexModeling onionR Aggregate and build models as an onion. nexModeling timeManip R package to manipulate dates nexModeling wsklimaR Get easy access to stations registered by the Norwegian Meteorological Institute neyhartj barleypheno An R package to run phenotypic data processing, optimized for the UMN Barley Breeding Group neyhartj fbutils R functions for manipulating data from the Android Field Book App neyhartj fsimpute An R package for imputing data from genotyping-by-sequencing experiments in bi-parental populations of finite generations of selfing neyhartj gws A R package for genomic or genomewide selection neyhartj miscRutils neyhartj neyhart neyhartj pbr Companion package to Plant Breeding in R neyhartj pbsim An R package of functions to perform breeding simulations. neyhartj qgsim An R package of functions to perform breeding simulations. neylsoncrepalde multinets Multilevel Network Analysis nfdisco fbdata Historical football data nfultz AWR.Athena Short R Wrapper for Athena JDBC connections nfultz AWR.Lambda R wrapper for AWS Lambda nfultz AWR.Redshift R Wrapper to Redshift JDBC driver nfultz Rip46 R package for IP addresses nfultz binomialbcp R package for binomial change point detection nfultz chad An R package for lightweight acceptance testing nfultz easyslider Easier sliders for Shiny nfultz ec2instances.info An R package containing info on ec2 instances. nfultz fuego Fire for R nfultz hashtrick An implementation of the hash trick using the OpenSSL library. nfultz hgrecap MCMC for hypergeometric model of size nfultz ht Tiny Hash Table for R nfultz shoegazer refactoring stargazer nfultz stackoverflow An R package for snippets from stackoverflow nfultz suicide timeouts for R scripts nfultz tron An R package for easy logging nfultz zcss Css for lattice and ggplot2 ngay LunchandLearn ngay kustats Statistical data and functions for classes at Keiser Univeristy ngfrey d3BarGraph Attempt to make a Bar Graph in D3 from within R ngfrey d3BarGraphV2 Simple bar graph in R with D3 and HTMLWidgets ngfrey d3Line ngfrey d3Paragraphs A learning library. Scott Murray's new paragraph example in R ngfrey pyramid an R implementation of the Population Pyramid JS library by Mike Bostock http://bl.ocks.org/mbostock/4062085#index.html ngfrey shinyGLMwithInteractions nghiavtr BPSC Beta-Poisson model for single-cell RNA-seq data analyses nghiavtr ISOP Isoform-level expression patterns in single-cell RNA-sequencing data nghiavtr mascotParser A parser for Mascot search results ( both PMF and MSMS) in R package. nghiavtr speaq A suite of informatics tools for the quantitative analysis of NMR metabolomic profile data ngloe olpsR Functions and algorithms for On-line Portfolio Selection with R ngopal rDynamo ngopal rNetVISOR ngort01 fuzzyMM Fuzzy-logic-based map-matching ngort01 map3d 3D plotting methods for spatial data on maps in R ngr-t r-bindedEval R package for evaluation with name binding ngreen-gt molculr ngreifer WeightIt R package for propensity score weighting ngreifer cobalt Covariate Balance Tables and Plots ngreifer modprobe R package for probing interactions in linear regression ngshya dtlng Data lineage from dtplyr/dplyr pipe syntax. nguwijy PlotTA This R package is to plot the basic Technical Analysis tools. nguwijy plotImpliedVol This R Package is to plot Implied Volatility of Option. nguwijy plotTA nguyentin BLMA BLMA: A package for bi-level meta-analysis ngwalton iec An R package for calculating the Index of Ecological Condition (IEC). nhavt Block3AugDesigns Augmented design package nhejazi biotmle :package: :microscope: R/biotmle: Targeted Learning with Variance Stabilization for Biomarker Discovery nhejazi biotmleData :package: Bioconductor data package associated with the biotmle R package nhejazi methyvim :package: :microscope: R/methyvim: Targeted Learning of Variable Importance Measures for Differential Methylation Analysis nhejazi methyvimData :package: Bioconductor data package associated with the methyvim R package nhejazi nima :package: R/nima: A package of Nima Hejazi's personal R tools nhemerson elasticFunctions Functions for making elastic search queries easier. nhemerson helperFunctions A useful package of proportion column and XoX column aggregation. nhemerson kidsR Package of useful functions for kids learning the R ecosystem and data programming concepts nhemerson tibbleColumns Helpful tidyverse functions that output tibbles niallbenj footballstats nicebread RSA R package for Response Surface Analysis nicebread p-checker p-checker: The one-for-all p-value analyzer. R-Index, p-curve, and more in one online app. nichburnett PITR nicholaelaw LFDataTool Tools for work. nicholas-vogt nevR initial commit nicholasbucher RBitso R Bitso API Package nicholasbucher ggcountymx Mexico Municipality Choroplets nicholasjclark MRFcov Markov random fields with covariates nick-komick NickTestRPackage This is just to try out publishing R Packages nick-murray redlistr redlistr: Tools for the IUCN Red List of Ecosystems and Species nick-ulle RCompilerExamples Examples for RLLVMCompile nick-ulle RLoopFusion Loop Fusion for R nick-ulle ast An R package that converts R code to various intermediate representations. nick-ulle llvm-csv-gen nick-ulle rewriteR Rewrite R code to prep for compilation. At present, this only converts code to SSA. nick-ulle rstatic An R package for static analysis of R code. nick-ulle rstubgen Type signatures for R functions that call C code nick-ulle typesys An R package for working with abstract type systems. nick-ulle zippopotamus R Interface for the Zippopotam.us web API nick-youngblut HTSSIP An R package for analyzing high throughput sequence stable isotope probing data nick-youngblut genome_align nickb- glida GLIDA is a tool to help analyse patterns of LD. Primarily visual and exploratory-based, with the ability to add gene annotations. nickbond BASEmetab nickbond Data nickbond catchstats functions to compile catchment statistics such as area, runoff, mean rainfall, based on values for nested sub-catchments nickbond hydroplots nickbond hydrostats Calculate hydrologic indices from daily streamflow data nickbond mwdata MW Datasets nickclark1000 rtfs TFS REST API wrapper in R nickfishbane DMRtools Helper functions for differential Illumina 450K methylation analysis nickfishbane cpsc540-project nickfishbane fishyTools Nick Fishbane's utility functions nickforr yieldsHelpr Watch nicklinacre aviation International aviation emissions trading scheme (ETS) nicklinacre resistance Insect resistance and GMOs nickmckay GeoChronR Development repository for GeoChronR nickpoison astsa R package to accompany Time Series Analysis and Its Applications: With R Examples nickpoison nltsa R package to accompany Nonlinear Time Series by Douc, Moulines, and Stoffer nickprock twitterFUN function to work with tweets nickreich ALERT Implementation of the ALERT algorithm for detecting the onset of influenza season. nickreich clusterPower the clusterPower package for R: simulating power and sample size calculations for cluster-randomized trials nickreich coarseDataTools the coarseDataTools R package nickreich teachr Modules for problem-based lesson plans with R nickreich testy nicksard fitr nicksi rxes R extension to work with XES log. See README.md for details nicksolomon binfer Bayesian things nickto AdvRCourseLab3 Advanced R Programming course. Laboratory work 3. nickto PensionFundsLv Package for retrieving data on Latvian pillar 2 pension funds and the risk-free rate. nickwing spatialfil R package for filtering array and matrices using convolution kernels nickytong PANDA nickytong SIBER Bimodality index computation using R nickytong drexplorer dose-response and synergy analysis for drug screening data nickytong mmeta mmeta package for meta analysis nickzani Coursera nickzani Cricinfo Scraping cricinfo data nicoballarini BaggedSubgroup first comit nicoballarini CRM_escalate nicoballarini biomarker No description or website provided. nicolaroberts hdp R pkg for Hierarchical Dirichlet Process nicolaroberts nrmisc R pkg for misc functions and colour palettes nicolasfstgelais DBexplore nicolasfstgelais EnviroDbdSummary nicolasfstgelais dbExplore nicolassoarespinto rcode nicolekunkel salaries nicoletadros Odds nicolewhite RNeo4j Neo4j Driver for R. nicolewhite pystr Python String Methods in R. nicorneau MatMobil Pkg R MatMobil nicospavlidis PPCI-R Projection Pursuit for Cluster Identification (R implementation) nicwarren FourBananasML finity machine learning nielsjdewinter ShellTrace shelltrace nielsrhansen knitrflow An R package for knitr dataflow graphs nietsnel inst.research nietsnel lavaan_b nietsnel test nignatiadis IHW Independent Hypothesis Weighting nignatiadis IHWpaper Package to reproduce all IHW paper figures nignatiadis ihwPaper Package to reproduce all IHW paper figures niharikag gMCI nihonjinrxs earthquakes R package for dealing with NOAA earthquake data; developed for Coursera Specialization Capstone: Mastering Software Development in R nikko4 cdsamp Continuous Distribution Sampling Methods niklaas fars Repository for Coursera's course "R Packages" by John Hopkins University niklaas geomhurricane niknap LidarProcessoR Some functions for teaching lidar processing in R niknap slidaRtools nilotpalsanyal GWASinlps nilsmy AMCTestmakeR A R Library to create questionnaires for Auto-Multiple-Choice nimasasa RFCMFND nimble-dev gprofiler Wrapper around Google perftools profiler and pprof visualizer nimble-dev nimble-devtools Developer tools for the NIMBLE project http://r-nimble.org nimble-dev rcjit Experimental jit compiler for R built on NIMBLE ninalpedersen Temp2 ninard EMcorrProbit EMcorrProbit R package ning-yan packagewrapper nipfpmf eventstudies An R package for conducting event studies and a platform for methodological research on event studies. nipper mishu My personal functions for R nipper twbxupdate nirasoft mybackup An R package for visualization nirasoft nirats An R package for time series nirasoft niravis An R package for visualization nirmalpatel eduminer Package to mine educational data nirmalpatel farsdata Functions to summarize and visualize FARS data nirmalpatel medinR Mining Educational Data in R nishantborude Brainoread This source code of a tool which is a standalone binary classifier using machine learning algorithms from R and Java. Currently used for diagnosis of patients suffering from brain disorders. nishanthu Locality-Sensitive-Hashing nishanthu Randomized.QuasiRandomNumbers Generates randomized quasi random numbers nishanthu Reversible.PRNG Generate random number forwards and backwards nishithkumarpaul Rvolcano nishuai Temp temporary nistara eidithR niszet rmusicwork Working repository for library of R music. This is only for test. nitlon Eartheaters nivangio adaStump nixstix RNASeqAnalysis R package for differential expression of RNA-Seq data njahn82 inspirehep R Client for INSPIRE HEP njahn82 rebi R Interface to Europe PMC RESTful Web Service njahn82 roadoi Use oaDOI.org with R njahn82 ropenaire R client for OpenAIRE njahn82 viaf R client for VIAF (Virtual International Authority File) njanetos llamaR All llamas in the US and Canada, whenever you want them, wherever you want them njanetos narchiveR-temp njanetos ssbenefits R package for computing social security benefits. njekin ToxPlot-R-Package Repo for ToxPlot R package njfreesurfer dogs No description or website provided. njfreesurfer ega Error Grid Analysis njm18 gmatrix R package for unleashing the power of NVIDIA GPU's njmadrid RNAseqQuality njtierney Nicholas-Tierney njtierney bomr An R package to make it easier to access data from the Australian Bureau of Meterology njtierney broomstick broom helpers for decision tree methods (rpart, randomForest, and more!) njtierney copertura Make it easier to solve the Maximal Coverage Problem in R njtierney cranscan scan cran for useful repositories with a Shiny app to help you swipe left/right njtierney decayr Makes gaussian decay easy! njtierney dsmcmc Fast and tidy data frames extracted from mcmc.list njtierney footprintr A simple implementation of csv-fingerprint in R njtierney ggmissing Enhance ggplot, allow for missing data njtierney maxcovr Tools in R to make it easier to solve the Maximal Covering Location Problem njtierney mex This is the repository for the upcoming package mex, the (m)issingness (ex)plorer. njtierney mmcc Fast and tidy methods for summarising mcmc chains using data.table njtierney naniar Tidy data structures, summaries, and visualisations for missing data njtierney narnia Tidy data structures, summaries, and visualisations for missing data njtierney neato A set of function that I use somewhat regularly njtierney treezy :palm_tree: Make handling decision trees easy. Treezy. :palm_tree: njtierney ukpolice :uk: :police_car: R package to pull police data from the uk police data repository :police_car: :uk: njtierney usa-traffic-fatalities njtierney usa-traffic-fatalities-2015 njtierney visdat Preliminary Exploratory Visualisation of Data nkatiyar cats nkbxwb berlineR My cool package nkola123 kola nl-hugo lsbeat nl-hugo mapNL Data sets with Dutch geospatial data nl-hugo ns Access the Dutch NS API in R nladwa nladwa General functions nlawlor multiClust nlhuong ZeroInflatedDESeq2 DESeq2 with Zero inflated Negative Binomial model (instead of negative binomial) nlhuong bootord nlhuong gradord Package for computing and testing the performance of ordination methods in detecting gradients. nlmixrdevelopment RxODE RxODE is an R package that facilitates easy simulations in R nlmixrdevelopment nlmixr nlmixrdevelopment xpose.nlmixr Graphical Diagnostics for Pharmacometric Models: Extension to nlmixr nln6 psmultilevel nmah hgu133plus2CellScore Expression dataset of standard cell types for the BioC package CellScore nmatare cscv Combinatorially Symmetric Cross-validation (CSCV) nmatzke rexpokit Nick Matzke's rexpokit package nmbrodnax rctr RCTR nmecsys BETS Package to obtain and analyze thousands of Brazilian economic time series nmecsys BETSaddin Some improvement for BETS package :game_die: nmecsys Inflation Tool for core inflation's calculations :money_with_wings: nmecsys iguanaR Pacote que conecta o R a API Iguana nmecsys nowcasting R package for Dynamic Factor Models with mixed frequencies and unbalanced panel nmmarquez ar.matrix Using sparse precision matricies and Choleski factorization simulates data that is auto-regressive. nmmarquez armatricies nmmarquez linHierarchy Linear Hierarchy Package for R nnavarro shapeQTL QTL mapping of shape data nnguyen2496 gradinfo nnguyen2496 mscir nnormandin hateMailR R package to automatically send angry emails from your Gmail account nnormandin localexpeRt R package for Binary Local Expert Regression, a new ensemble machine learning methodology for better risk quantification noahbullock extGreSQL Adds convenience load functions to RPostgreSQL noahbullock noahfuncs noahbullock rISONE ISO New England API functions for R noahhaber longitudinalcascade noahhl campfireR Campfire API wrapper for the R statistical programming language noahhl oauth OAuth client for the R statistical programming language noahhl r-does-rss Ultra-lightweight RSS reader for R noahhl r-google-analytics Fork of r-google-analytics package from http://code.google.com/p/r-google-analytics/ noahhl rAssistlyAPI Unofficial and incomplete Assistly API wrapper for the R statistical programming langauge noahhl rCampaignMonitor Unofficial CampaignMonitor API wrapper for the R statistical programming language noahhl rClicky R wrapper for getclicky analytics API noahhl rpackager Package and dependency management tools noahrose vcf2eqtl A pipeline for eQTL detection from a transcriptome reference noamross RcppSandbox noamross SODDr Sudden Oak Death work noamross age-infects Package for manuscript and code of age-infection interaction paper noamross arrr Translates ye lubbery words noamross balleRs Tools for locating high-value R users across the web noamross doctest noamross driver noamross eqnfree Equation-free modeling of multiscale systems noamross firstpackage noamross hfa noamross htmlhelp Enhanced HTML R documentation noamross juicer A thin wrapper for in-lining CSS styles into HTML noamross juno noamross newproj noamross noamtools Miscellaneous convenience functions for R noamross quickscraper An R package wrapping quickscrape, a node.js web scraper noamross rexr An R wrapper for the rexpy python module noamross rnodejs A helper package to create node.js module wrappers. noamross sodi noamross spore Optimal control of spore-driven disease noamross testdat noamross testpack A package noamross texttable noamross tracer collect trace information from R optimization functions noamross twee noamross upipe nobodyinperson functionutils R utilities to manipulate functions nobodyinperson matrixutils R utilities to manipulate matrices. nobodyinperson meteoRology R functions useful for meteorological calculations nobodyinperson r-eventforecaster simple yet effective event forecasting nobodyinperson wettRmast R functions to handle standard Wettermast Hamburg data text files nobuhiroK MSDRCapstone nobuhiroK MSDRCapstone3 noemiandor expands Expanding Ploidy and Allele Frequency on Nested Subpopulations (expands) characterizes coexisting subpopulations in a single tumor sample using copy number and allele frequencies derived from exome- or whole genome sequencing input data. noerw opensensmapR handle environmental sensor data from opensensemap.org in R nola-r datetimeR R package with helper functions for working with dates and times nola-r lacrash Utility Functions for Analyzing Louisiana Crash Data nola-r nolar nolancardozo13 eda Automating Exploratory Data Analysis nolancardozo13 eda.analytics nolanlab MouseImmuneReference A reference map of the mouse Immune System nolanlab PLAYRDesign A tool to design probes for the PLAYR technology nolanlab Rclusterpp Memory efficient clustering in R for large datasets nolanlab citrus Citrus Development Code nolanlab cytofCore R package for working with CyToF data nolanlab scaffold scaffold nolanlab spade SPADE: Spanning Tree Progression of Density Normalized Events nonsleepr PyR nonsleepr teradataR R package to perform in-database analytics using Teradata database noramvillanueva clustcurv noramvillanueva incidents R package norbertbin SpecClustPack An R package of functions related to spectral clustering. norbertbin rCASC A simple R package for covariate assisted spectral clustering. norimune glmmstan generalized liner mixed model on rstan using glmer-style (lme4) formulas. northernjamie imdr R Package to get IMD data using postodes notonthehighstreet data_productImpact notplayingcute aaaaahomework wu nozma RondTool 温湿度データロガーで記録したデータを扱うための関数群 npelikan clarifyr R library to retrieve Clarity XML files and parse them into a useful rectangular format. npetraco bayes705 npetraco fdrID R package to compute local false discovery rates for machine learning classification/discrimination tasks via Bayesian Poisson regression npetraco x3pr Basic read/write capability for the x3p surface metrology format in R npolar R-npolar npremara QCCTS R package- Quality Control Charts for Time Series Data nproellochs ReinforcementLearning This package performs model-free reinforcement learning in R. nproellochs SentimentDictionaries npuletti ForIT Functions From the Italian Forest Inventory npuletti ForITdev npuletti average Volume and biomass functions from Italian Forest Inventory nramon madrid.air R package to parse air quality data published by http://datos.madrid.es/. nrauscher corpus nreid mscr nrguimaraes sentimentSetsR A customizable sentiment package for R language nriddiford cnvPlotteR Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec nriddiford mutationProfiles Extract and explore snv data nrkoehler dfgfkwahl2015 Liste der Kandidierenden für die DFG-Fachkollegienwahl 2015 nrkoehler leipzigr Collection of functions and Leipzig related data nrkoehler sgrqr Scoring the St. George Respiratory Questionnaire (SGRQ) nrkoehler srir Scoring of the Severe Respiratory Insufficiency Questionnaire (SRI) nrkoehler streetsofle Street directory of the German city of Leipzig ns-ctru ctru CTRU R package ns-ctru futility nsantantonio Bilinear Fit bilinear models using AMMI or GGE and make 2D and 3D biplots nsb334 travis-training nsepulveda QS nsgrantham scriptr 📃 Command line scripts in R. nsheff CWriteR C++ functions for writing large vectors from R nsheff IRangeKernels Extends IRanges by adding kernel multiplication to Views objects nsheff LOLA Locus Overlap Analysis: Enrichment of Genomic Ranges nsheff dipPeak Kernel density estimator for DNase data. nsheff project.init R project initialization nsheff simpleCache Quick R caching for reproducible big data projects nshi-stat netiim3 Improved Inference Methods for Network Meta-Analysis nshi-stat pimeta Prediction Interval for Random-Effects Meta-Analysis nsj3 darleq3 nskaff dev.expl.mgcv nskaff dev.expl.package Calculate the deviation explained for individual covariates in gam models from the 'mgcv' R package nsmader chstatsum Functions for generating statistical summaries of data, typical to our work at Chapin Hall. nsmader tcbTools R tools for taking care of business nspope r2vcftools nstauffer aim.analysis Functions for manipulating, analyzing, and reporting from BLM AIM data nstauffer dima.tools Reading, Manipulating, Analyzing, and Visualizing Data from Copies of the Database for Inventory, Monitoring, and Assessment (DIMA) nstauffer sample.design Basic tools for implementing spatial sample designs nstrayer D3ManhattanPlots An R HTMLWidget for making interactive manhattan plots for GWAS. nstrayer nmisc Blatant copy of Frank Harrell's hmisc package nstrayer nviz A collection of random visualizations I find myself reusing a lot nstrayer timelinePlot An r package to visualize time to event data. ntarabelloni rfda Robust methods for Functional Data Analysis in R ntarabelloni roahd R package for Robust Analysis of High-dimensional Data nteetor allotalot Parallel Assignment in R nteetor camazotz Standardizing readability of R object character coercion and printing. nteetor cathy A survey creator tool in R nteetor chartisan chartist.js R package (3rd times a charm?) nteetor dull A new approach to shiny applications nteetor golly Toolset for the G2 Visualization Grammar nteetor hotr Heroes of the Storm Data nteetor jedi An R package connecting Salesforce and R through the Force.com REST API nteetor laputa R color palettes from the works of Hayao Miyazaki nteetor limestone Build HTML forms nteetor prairie Get web applications growing in R nteetor roasted R mimicking Java nteetor tinsel Use Decorators to Transform Functions nteetor wikind A wiki for R! nteetor zeallot Variable assignment with zeal! (or multiple, unpacking, and destructuring assignment in R) nteetor zorcher Multiple and Unpacking Assignment in R ntels-BI ntelsBI Analysis R package for ntels Business Intelligence Team nthomasCUBE KEGGexpressionmapper nthomsn swotr R based visualizations for RPI campfire nturaga BiocGenerics test nturaga BiocStyle test ntyet sfdr ntyet tcrmrnaseq nuffe penfmbr Penalized FamaMacBeth nuffe wrdsr Connect to Wharton WRDS trough R nufflytics nufflytics R package with utility functions for www.nufflytics.com nuhorchak RClean nukappa dropseq No description or website provided. nukappa seurat_v2 Seurat v2 (2016 Oct) nulloa FluViz Functions to grab old flu data. nulloa functform A R package for using functional form models numbersmart deployR Setup a numbersmart deployment environment numbersmart nsdl4apv datalab for APV numbersmart nsdl4tb datalab for Tara Brooch nuno-agostinho psichomics Interactive R package to quantify, analyse and visualise alternative splicing data nurandi katadasaR An R Package of Word Stemming for Bahasa Indonesia Using Nazief & Adriani's Algorithm nuritovbek lrem nutriverse anthroWHO nutriverse zscorer Weight-for-age, height-for-age and weight-for-height z-score calculator nutterb ArgumentCheck Simple Tools for Facilitating Informative Parameter Checks in R Functions nutterb Bluegrass An assortment of tools and gimmicks to simplify my professional responsibilities nutterb HydeNet Hybrid Decision Networks in R nutterb StudyPlanning Statistical Power and Sample Size Analysis nutterb broom.base Stripped down broom package with basic functionality only nutterb junkyard Deprecated and/or decrepit code nutterb labelVector Label Attributes for Atomic Vectors nutterb lazyWeave R package lazyWeave nutterb ldsconf LDS General Conference nutterb ldsmls Utilities to extend functionality for LDS Member and Leader Services. nutterb pixiedust Tables So Beautifully Fine-Tuned You Will Believe It's Magic. nutterb redcapAPI R interface to REDCap (http://www.project-redcap.org/) nutterb shinydust Shiny User Interfaces and Customizations Using Pixiedust nutterb sillylogic Fun representations of boolean values. nverno afs Watch nverno agg aggregation functions nverno datadoc Some helpers to document data quickly nverno datavis perusing the master files nverno dirs some functions for exploring directories nverno hs-tools nverno iclean nverno mooseapp Interactive app to visualize moosilauke data. nverno moosedata nverno moosegps gps locations of plots etc. nverno packvis nverno prisms nverno rstuff just stuff for doing tings nverno seedlings No description or website provided. nverno seedsub seedling and substrate data for moosilauke segments/transects/permanent plots nverno seedsub.mas seedling substrate master files nverno sjs nverno stuff just stuff for doing tings nverno substrate some substrate data nverno sync.afs track some files and update data nverno treestack nvilloria rgtap An R package for reading GEMPACK data and solution files nwaff ecomplex R package for computing the epsilon-complexity of a time series. nwaff eegcomplex Code for reproducing analyses in the thesis "Improvement of epsilon-complexity estimation with an application to seizure prediction" nwaff tsfeats Wraps and tidies some time series features nwaff tssims Time series simulations with a common interface. nwagenbrenner windtools Tools for processing and visualizing wind data in R nwfsc-assess PacFIN.Utilities Package for slicing-and-dicing PacFIN data: Andi Stephens and Kelli Johnson nwfsc-assess geostatistical_delta-GLMM Tool for geostatistical analysis of survey data, for use when estimating an index of abundance nwfsc-assess nwfscAgeingError Wrapper for tool to estimate ageing error given double-reads of hard structures (e.g., otoliths) nwfsc-assess nwfscDeltaGLM Bayesian stratified delta-GLMM software for standardizing fishery-independent index data for U.S. West Coast nwfsc-assess nwfscDiscards Tools for formatting data packages related to discards for use in SS3 nwfsc-assess nwfscMapping Mapping code for NWFSC data nwfsc-assess nwfscSurvey Code for analysis of the NWFSC trawl surveys nwfsc-data ExtractR nwfsc-timeseries MARSS Multivariate Autoregressive State-Space Modeling with R nwstephens RmixADAexamples R package version of the schaarschmidt/mixADAexamples github repository. nwstephens analytic-infrastructure nwstephens instanceCalc Estimate the instance size needed to support a team of R users nwstephens nyr2016addins nwstephens rsp-admin nwstephens rstudio-notebook-setwd-bug nwstephens vignette-addins nxdao2000 RcppSQMC Wrapping SQMC nxdao2000 is2 nxdao2000 pis2 nxskok btstan R package to use Stan to estimate parameters for Bradley-Terry model (with ties). nxskok d29data nxskok edfr Calculate EDF Test Statistics for Goodness of Fit nxskok ggnorm nxskok hotpo nxskok mkac Mann-Kendall test for trend in the presence of possible autocorrelation nxskok poistan Poisson model fit with Stan nxskok smmr sign test and Mood's median test nxskok somedata Some STAD29 data sets nykanenj muensing nyoungb2 HTSSIP An R package for analyzing high throughput sequence stable isotope probing data nyu-mhealth Mobility nyubachi addTwoSpaces nyubachi insertTodayTimestamp nz-stefan shinyscaffold Create boilerplate code for Shiny web applications o2r-project containerit Package an R workspace and all dependencies as a Docker container o2r-project o2r-inspecter Inspection of compendium details as part of the o2r Web API obarisk rconf rconf obarisk sqltools sqltools for R oblarquez GCD Global Charcoal Database oblarquez paleofire paleofire package obreschkow dftools obreschkow gdftools obreschkow mftools R packages for optimal mass function fitting obrl-soil dsmartr An R implementation of the DSMART algorithm observatory-economic-complexity oec-r The Observatory of Economic Complexity - R Package obuchel my_app1 obuchel myapp No description or website provided. obuchel rergression ocant Hawk-Eye Processing trj and prj Hawk-Eye files ocant racketR Processing Hawkeye testing data ocean927 R2QCon Prototype of R to Q connector. ocean927 R2QConnector Prototype of R to Q connector. oceanofscience week2job ocelhay modellingtrainr Package for the "Epidemiological and Economic Modelling of Infectious Diseases" Course ococrook sugsvarsel An R package for the SUGS and SUGS VarSel algorithms oddworldng INEbaseR Desarrollo de una librería de R para la obtención y análisis de datos desde fuentes open data del Instituto Nacional de Estadística (INE) oddworldng RLibINE Desarrollo de una librería de R para la obtención y análisis de datos desde fuentes open data del Instituto Nacional de Estadística (INE) oddworldng ROpenDataLib Desarrollo de una librería de R para la obtención y análisis de datos desde fuentes open data odeasilence datacsv A package for data analysis odeleongt insetmap Prepare inset maps using simple wrappers based on existing tools. odeleongt pemr Manage personal environmental monitors data odeleongt postr Prepare reproducible R Markdown posters oduerr idpedu Usefull tools for teaching statistics oduerr idpstud oduerr layout ofurkusi limestats Functions for automating analysis of survey data from LimeSurvey ofurkusi metadata Add metadata to datasets oganm GOADquery ❗️ CURRENTLY BROKEN (on GOAD side) Querying differentially expressed genes from Glia Open Access Database oganm MSigDB Molecular Signatures Database in R oganm allenBrain :mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R. oganm brainGenesManuscript oganm diceSyntax dice roller with some syntax oganm gemmaAPI An R wrapper for Gemma's restful API. oganm geneSynonym Quick access to gene synonyms oganm homologene An r package that works as a wrapper to homologene oganm import5eChar R interface for Walter Kammerer's Fifth Edition Character Sheet oganm markerGeneProfile Marker gene profile estimation method used in NeuroExpresso manuscript oganm monsteR oganm neuroExpressoAnalysis Pre-print at: http://www.biorxiv.org/content/early/2017/05/18/089219 oganm ogbox A multi-purpose R package oganm parseMe test package for stackoverflow question oganm priorPCA oganm regenerationCMap oganm weirdRegexFunction oganm wizaRd ogansell MSampNZ Package for generating sample designs based on a Balanced Acceptance Sampling (BAS) master sample. ogroendal DSTget ogru DGSA An R implementation of the DGSA method ogru fTree An R package that implements methods for growing regression trees with functional and multivariate outputs ogru fdagstat An R package that implements the methods of geostatistics for functional data ogsj makeweight ogsj oggr Data Processing helpers oharac provRmd provenance functions for Rmd scripts oharar MoL oharar rBBS R package to import USGS' BBS data ohgane DigestionSpecificity Analyze Cleavage Site Specificity ohgane IPPD_ohgane ohgane ShotgunLipidomicsR A personal utility package with a collection of functions for analysis of mass spectrometry data. Focus is on shotgun lipidomics data acquired on a Thermo LTQ-Orbitrap XL. ohgane mzmlview An R package to extract header informations from mzML files (e.g., scan number, injection time, total ion count etc.). ohsu-knight-cancer-biostatistics omics-analysis oirnyu NYUOIR NYUOIR oislen BuenaVista Functions for Everyday Data Science Tasks oizin fars oizin labellr labellr okamumu HErangSRM This is an experimental project for hyper-Erlang software reliability model for fault detection/correction time distributions okamumu Rsrat Software Reliability Assessment Tool on R okayaa MT An Implementation of Methods in Mahalanobis-Taguchi (MT) System okayaa MTS R package for Mahalanobis-Taguchi System okayaa MTSYS Methods in Mahalanobis-Taguchi (MT) System okgreece Cluster.OBeu okgreece DescriptiveStats.OBeu okgreece OBeU okgreece OpEnergyAnalytics OpEnergyAnalytics okgreece TimeSeries.OBeu Rpackage-Time Series Analysis-OBEU okgreece TrafficBDE oksurf okRtools R tools okugami79 googletrend R package 2013 google trend okugami79 sentiment140 R package for sentiment text analysis olaf-b marqmetrix R HyperSpec import filter for Marqmetrix Raman spectrometer files olafmersmann emoa R functions for evolutionary multiobjective optimization. olafmersmann fftw R bindings for the FFTW library. olafmersmann mco olafmersmann soobench Collection of single objective optimization test problems for R. olenaostasheva First-repository olenaostasheva ReplicationProject oleon12 BatWing olfrost poweRbi An R-based, httr-style interface for the Power BI REST API. olgakamneva genomics2ecology genomics2ecology R package oli666 avayaECH oli666 oliTest oliTest oli666 test oliverychen network.predication oliviergimenez GammaGompertzCR Fit Gamma-Gompertz model to capture-recapture data using data cloning oliviergimenez R2ucare R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations) oliviergimenez cats my first package (toy example) oliviergimenez occuHMM R package to simulate and fit occupancy models in the hidden Markov modelling framework oliviermfmartin zebu R Package for Local Association Measures olivmrtn MachineLearningGWAS Machine Learning for Genome Wide Association Studies olivmrtn zebu Local Association Measures olli0601 DataChallenge.2017 R package for the 2017 Imperial/WHO data challenge olli0601 PANGEA.HIV.sim HIV Phylogenetic Simulation Model for the PANGEA-HIV methods comparison exercise. olli0601 PANGEAhaircut Code package to post process IVA contigs before they are used to assemble a de novo reference genome olli0601 Phyloscanner.R.utilities scan phylogenies created along a genome for patterns olli0601 abc.star Calibration procedures for accurate ABC olli0601 big.phylo An R package to construct phylogenies for very large numbers of sequences olli0601 phyloscan scan phylogenies created along a genome for patterns olli0601 rBEAST Automated generation of BEAST XML files, with a focus on dating phylogenies of HIV sequences ollyburren cogs Functions to process capture Hi-C calls from CHiCAGO. olshena babel olssol cutoff R package olssol stresstest R package stress test omarbenites bigdata_bioinformatics omarbenites cropdatape Package cropdatape omarbenites cropont omarbenites fbanalysis Interface package for HiDAP analysis omarbenites fbcheck Fieldbook check omarbenites fbcrops omarbenites fbdesign omarbenites fbdocs Hidap documentation omarbenites fbmaterials omarbenites fbmlist Module for Managment and Generation of germoplasm list omarbenites fbopenbooks A package to administrate and open fieldbooks in HiDAP omarbenites fbprogram omarbenites fbprstages omarbenites geneticdsg Genetic designs package for plant breeding experiments. It includes north caroline design I & II (NCI, NCII), Line by Tester (LXT) and among others. omarbenites iskay iskay omarbenites pvs The package for participatory varietal selection under Mother&Baby methodology omarbenites sbformula The package provides a set of formulas for plant breeding trials. All these formulas belong to procedures for standard evaluation and crop data management at International Potato Center. omarbenites traittools R-tools for trait manipulation in fieldbooks using Trait Dictionaries omarwagih RWebLogo RWebLogo is a wrapper R package for the popular WebLogo that allows plotting of customised sequence logos. omarwagih ggseqlogo Publication-quality sequence logos in R omarwagih gitter an R package for quantification of pinned microbial cultures omarwagih lgo omarwagih rmimp Predicting the impact of mutations on kinase–substrate phosphorylation omarwagih rmotifx Discovery of biological sequence motifs in R omarwagih siftr Predicting the impact of mutations on protein function ome rOMERO-gateway OMERO R Gateway omegahat Aspell omegahat Combinations Compute the combinations of choosing r items from n elements. omegahat GeoIP Mapping IP addresses to physical locations omegahat IDynDocs omegahat RAmazonDB REST-based Interface to Amazon's SimpleDB omegahat RAutoGenRunTime omegahat RBigfiles omegahat RCSS Facilities for reading and working with CSS files in R omegahat RClangSimple omegahat RCurl omegahat RDA omegahat RDCOMClient omegahat RDCOMEvents omegahat RDCOMServer omegahat RGCCTUFFI omegahat RGCCTranslationUnit omegahat RGoogleTrends omegahat RGraphicsDevice omegahat RHTMLForms omegahat RJSCanvasDevice omegahat RJavaScript omegahat RKeynote omegahat RMatlab omegahat RNYTimes omegahat RRuby omegahat RSourceTools omegahat RTidyHTML omegahat RTiming omegahat RTimingTools omegahat RUbigraph omegahat RXQuery omegahat Rcartogram omegahat Rcompression omegahat Rcrypt omegahat Rffi omegahat Ripinfo omegahat Rlibstemmer omegahat Rlibstree Suffix Trees in R via the libstree Clibrary omegahat Rstem omegahat RwxDevice omegahat RwxWidgets omegahat S4DBMSInterface omegahat SWinRegistry omegahat SWinTypeLibs omegahat SpiderMonkey omegahat Sxslt omegahat XDocTools omegahat XML The XML package for R omegahat XMLSchema R package to work with XML Schema omelyanchikd merger omgtats Blackjack omgtats elliptical omgtats odds Functions for Gambling omsai groHMM Bug fixes for bioconductor groHMM 1.7.0 onakoinz mytestpkg test package oncoclass DoseR R package for Dose Response experiments oncoclass hemaClass Classification tools for haematological diseases oncogenetics oncofunco Custom functions onehundredpercenttexan colourgen colourgen package oneillkza ContiBAIT oneilsh rstackdeque Stack and deque datatypes for R - fast and functional onertipaday Rcolombos Interface to colombos.net compendia using the exposed REST API onertipaday chucknorris Wrapper to Chuck Norris fact API onertipaday ghibliapi onertipaday predictionapirwrapper R Wrapper for Google Prediction API oneyb ggcrap R add-ons for the great plotting package ggplot2 ongclarissa woodhouse R package for data cleaning onnokleen alfred An R-package for obtaining real-time data from ALFRED database onnokleen grch onnokleen mfGARCH An R package for using mixed-frequency GARCH models ontherunvaro formatFileAddin RStudio addin for formatting source code with formatR opardo GPDPQuantReg R Package. Bayesian and nonparametric quantile regression, using Gaussian Processes to model the trend, and Dirichlet Processes, for the error. Author: Carlos Omar Pardo opardo dlmRStan R package. Bayesian linear model in a time series context (dynamic beta for each observation). Uses RStan to develop the MCMC algorithm. Author: Carlos Omar Pardo. opelr opelR opelR R Package -- Functions that I frequently use between projects openanalytics BIGL openanalytics ctv-programming-tools openanalytics ganalyse Easy Analysis of RNASeq DE openanalytics gcount Counting reads from RNA-seq data openanalytics ggfastqc Generate Summary Plots of FastQC Reports openanalytics ggqualimap Plots of Statistics Collected by Qualimap from RNASeq Data openanalytics gread Fast reading and processing of genome annotation and read format files such as GTF, GFF, BED, BAM etc. openanalytics poissontris openanalytics redmineR R client for redmine openconnectome FlashR openconnectome FlashR-- opencpu client R client for OpenCPU 2.0, currently mostly for unit testing opencpu opencpu OpenCPU system for embedded scientific computation and reproducible research opendatabio opendatabio-r R package for interacting with OpenDataBio openefsa efsa2016.00601 Supporting code for EFSA opinion EFSA-2016-00601 openefsa efsagis R package with data / functions to support creating EU28 thematic maps openefsa mssTablesToExcel openfields Ambcitsci openfields NicheShift openfields basin openfields net openfields ons openfigis RFigisGeo A R package to handle utilities for geospatial processing openfigis RFirmsGeo Tools for georeferencing FIRMS stocks & fishery resources openml clustering openml openml-r R package to interface with OpenML openml r R package to interface with OpenML openml randomBot Random hyper-parameter sweep over OpenML tasks openregister RegistersClientR An R client to talk to registers openscienceunil modulr A Dependency Injection Framework for R opensdmx rsdmx Tools for reading SDMX data and metadata in R opentargets ropentargets R client package for Open Targets REST API opisthokonta tsnemicrobiota t-distributed stochastic neighbor embedding for microbiota data opop4615 sungkiquant opower rbundler Rbundler manages an R project's dependencies systematically and repeatedly. opower wordpress optimist inhouse CI optimist optimist Optimist R package orange256 legendary-robot orange256 mllab a R package that can construct a 2nd-order CFA model with interaction terms. ornelles ddpcr R functions to work with BioRad's digital PCR data from QuantaSoft ornelles virustiter R functions using EBImage to determine viral titers from fluorescent image sets ornithos nectr nectr: Non-parametric Exploratory Clustering with TURN-RES. This is an R package including an implementation of the non-parametric clustering method authored by Foss, 2002. It was designed for industry analysts who need a fast way to explore a low dimension (p<10) dataset which does not impose a priori assumptions on the structure of the data. orthoptera-aao traitBot Code to infer traits across the BioAcoustica Classification and upload them ortzsu farspractise coursera exercise package osavchuk ICV ICV package for R system. Functions for computing the global and local Gaussian density estimates based on the ICV bandwidth. See the article of Savchuk, O.Y., Hart, J.D., Sheather, S.J. (2010). Indirect cross-validation for density estimation. Journal of the American Statistical Association, 105(489), 415-423. oscarperpinan meteoForecast A package to access outputs from Numerical Weather Prediction models both in raster format and as a time series for a location oscarperpinan pdcluster pdCluster: Partial Discharges Clustering oscarperpinan pkgMethods Package including methods oscarperpinan rastervis The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction. oscarperpinan solar Solar Radiation and Photovoltaic Systems with R oscarperpinan tdr Target Diagrams oscarsanden DeliveryMan AI course, Labb 1 oschwery MonoPhy R package to explore monophyly oshimamh nbaShotCharts A package for R to scrape and visualize shot data for NBA players osimloeff PI-Web-API-Client-R PI Web API R package which is REST client library to get PI data through PI Web API. osipam gmum.r-chem oskarlphansen makeDKN Create grids as described in http://www.dst.dk/da/TilSalg/produkter/geodata/kvadratnet oslerinhealth baker oslerinhealth neurohcp oslerinhealth spotgear osm-router osmprob R package for probabilistic routing osmarllq myFun Persoanl and useful functions to perform my data analysis. osmdatar osmdata R package for downloading OpenStreetMap data osmdatar osmdatar R package for downloading OSM data osmose-model osmose Tools for running, calibrating and analyzing an OSMOSE model within R osmose-model osmose.fishmip Tools for FISH-MIP simulations using the OSMOSE model osmose-model osmose2R Utilities to analize OSMOSE outputs within R osofr GriDiSL Grid-based Discrete SuperLearner for Longitudinal Data osofr condensier Non-parametric conditional density estimation with binned conditional histograms osofr estimtr (E)stimate the (S)urvival for (T)reatment (I)n random (M)oni(T)o(R)ing Processes with IPTW for the Survival Hazard osofr gridisl Discrete SuperLearner with Grid-Search for Longitudinal Data osofr growthcurveSL SuperLearner Growth Imputation osofr longGriDiSL Grid-based Discrete SuperLearner for Longitudinal Data osofr simcausal Simulating Longitudinal and Network Data with Causal Inference Applications osofr socialnets.sim.study osofr stremr Streamlined Estimation for Static, Dynamic and Stochastic Treatment Regimes in Longitudinal Data osofr tmlenet Targeted Maximum Likelihood Estimation for Network Data oswaldosantos EpiDynamics An R package with Dynamic Models of infectious diseases oswaldosantos INLAOutputs R package to process selected outputs form the INLA package oswaldosantos capm R package for Companion Animal Population Management oswaldosantos ggsn R package to add north symbols and scale bars to maps created with ggplot or ggmap oswaldosantos ptb R package for prevalence estimation and diagnostic test evaluation in a Bayesian framework oswnavarre farsON2 oswnavarre test My first link othomantegazza alma Protein alignment markup tool - work in progress. othomantegazza crossr Compare transcriptomes from different species. ottlngr DBopen Query the DB-Open-Data timetable API ottlngr LexisPlotR R Package for Plotting Lexis Diagrams ottlngr bib2df Parse a BibTeX file to a tibble ottlngr bundesligR ottlngr compareVersions ottlngr ggThemeR ggThemeR - RStudio Addin ottlngr keystrokeR ottlngr openbahn Query the Deutsche Bahn Timetable API ottlngr wittgenstein oubiwann lcmap-client-r LCMAP REST Service R Client oubiwann q ourtac tacr Total Animal Care R ousuga RelDists In this package are available reliability distributions and it is possible to estimate parameters and to fit regression models within GAMLSS framework ousuga reldist Este es un paquete con distribuciones útiles en confiabilidad. outcomesinsights jigsaw_r Tools in R to work with data from Jigsaw outcomesinsights nhanes.tools R package to make loading and using NHANES data easier outcomesinsights seer.tools Tools to download and use SEER data from NCI outcomesinsights seermedicare Visualization tools for SEER-Medicare publications data ove-ut3 apogee ove-ut3 enquete.ip overeem11 RAINLINK Retrieval algorithm for rainfall mapping from microwave links in a cellular communication network. overhuman d1r owenjonesuob BANEScarparking Dataset of parking records from 8 car parks located in Bath, United Kingdom; datasets of potentially relevant information for predicting car park occupancy; and functions for obtaining and working with these datasets. owenjonesuob BANEScarparkinglite Contains functions for importing and working with the BANES car parking records and other related datasets. ox-it oidnChaRts A collection of functions for building generic interactive htmlwidget visualisations. A complementary guide to htmlwidgets is developed here: oxfordinternetinstitute oii-r An R package for the OII stats course oyhel Rhelpers Useful R helper functions oyhel qqman2 Manhattan and QQ plot creator for GWAS oyvind-bakke fwerapprox FWER approximations ozagordi myweatherData ozancinar cgr ozancinar poolR Package for pooling the results from (dependent) tests ozanmirza1 Calculator ozjimbob Rslippy Slippy map tile generation for R ozjimbob ecbtools R tools developed by the University of Tasmania Environmental Change Biology lab. ozjimbob r-povray An R Package to interface with the POVRay raytracing system. ozjimbob raaqfs R package for plotting CTM NetCDF files from the Australian Air Quality Forecast System p-jayanna gbod Grid Based Outlier Detection p-mohan autocomplete Autocomplete widget p-schaefer BenthicAnalysis p-schaefer BenthicAnalysistesting p-schaefer RandGRASSGIS p-schaefer psUtilities p15e BeNice Set of R functions to improve Rmd outputs and default figures. paasim circlr An R package for encircling a set of points with a smooth (round-edged) convex hull in 2D using (quadratic) Bezier curves or semicircles. paasim fino Generates, validates and converts between Finnish ID number types. paasim glmproj paasim shinyproj An R package for interactive model selection using projpred. paasim simpleada An R package for accessing the avoindata.fi API. paasim simplefmi An R package for downloading weather data from the FMI API. paasim simplepx An R package for accessing the PX-Web API of Statistics Finland. pab2163 TOT_ERP Data, scripts, & visualizations for an ERP study on tip-of-the-tongue states pabgamu firstR task from Building R packages, Coursera pablo14 clusplus Expand cluster functionalities pablo14 funModeling R package: funModeling: data cleaning, importance variable analysis and model perfomance pablobarbera scholarnetwork Extract and Visualize Google Scholar Collaboration Networks pablorcw pwind Package of functions for wind energy calculations pabromvar STools pabromvar ScalpelTools1 pabromvar Stools1 pabromvar prueba pachamaltese OEC For details see the readme below or read documentation pachamaltese WIG No description or website provided. pachamaltese d3plus Seamless integration for R and D3plus pachamaltese d3plus-r Seamless integration for R and D3plus pachamaltese oec The Observatory of Economic Complexity - R Package pachevalier WidukindR R client fot the Widukind API pachevalier dataAN fonctions pour importer les données du site http://data.assemblee-nationale.fr/ pachevalier dbnomics An R client for the db.nomics.world/ database pachevalier openentreprise An R client for the openentreprise API pachevalier toyR toy package pachevalier tricky A bag of tricks pachterlab kma Keep Me Around: Intron Retention Detection pachterlab sleuth Differential analysis of RNA-Seq pachterlab zika sleuth workflow for processing zika RNA-seq dataset pacificclimate ClimDown PCIC's Daily Climate Downscaling Library pacificclimate PCICt PCICt implements 360-day, 365-day, and Gregorian calendars in a transparent manner which behaves like a POSIXt in R. pacificclimate Rudunits2 pacificclimate climdex.pcic Routines to compute ETCCDI Climdex indices pacificclimate climdex.pcic.ncdf R package to compute Climdex indices on gridded NetCDF files pacificclimate ncdf4.helpers Routines to make using NetCDF files in R cleaner and easier. pacificclimate zyp Zhang / Yue Pilon prewhitened trend routines for R. padilla410 SWMPrExtension r package of additional functions for processing and evaluating data NERRS SWMP padpadpadpad CoppeR get pictures of Copper (my dog) in your R console padpadpadpad MicrobioUoE R package for Buckling and Westra labgroups padpadpadpad TeamPhytoplankton A bunch of functions to help with the analysis of thermal adaptation data. padpadpadpad dataViewer An RStudio Addin for visualising data, exploratory analyses, and identifying outliers padpadpadpad nls.multstart Non-linear regression in R allowing multiple start parameters padpadpadpad nlsLoop A reliable and reproducible way of fitting non-linear regression over levels of a factor in R padpadpadpad nlsTools Tools expanding the non-linear regression method nls and nlsList from nlme palautatan biohazardLibrary biohazardCleanUp R library palderman dssatR R interface to the Decision Support System for Agrotechnology Transfer-Cropping Systems Model (DSSAT-CSM) palencar TraderBot paleo13 bayescanr This R package runs BayeScan paleo13 marxan This R package contains decision support tools for reserve selection using Marxan. paleo13 rapr rapr: Representative and Adequate Prioritisations in R paleo13 rgurobi Solve optimisation problems using the commercial Gurobi software package paleo13 structurer This R package runs Structure analyses paleofire GCD Global Charcoal Database paleofire paleofire paleofire package paleolimbot chemr data structures for chemistry in R paleolimbot dalcwrs paleolimbot easyoptim An optimisation interface for R paleolimbot easyphreeqc A slightly easier R interface to phreeqc modeling paleolimbot exifr Read EXIF data in R paleolimbot ggspatial A ggplot2 R extension for plotting Spatial* objects paleolimbot hydatr An R interface to the HYDAT database paleolimbot landsatutils R package with convenience functions for Landsat workflows paleolimbot mudata paleolimbot ofcores tools for storing and manipulating core data paleolimbot paleoxrf paleolimbot prettymapr Pretty Mapping In R paleolimbot rcanvec Access and plot CanVec and CanVec+ data for rapid basemap creation in Canada paleolimbot rclimateca An R Package to fetch climate data from Environment Canada paleolimbot resteasy R package to query and cache HTTP requests paleolimbot rfuncs various R functions of use paleolimbot rosm Plot Open Street Map and Other Tiles in R paleolimbot soilptf Implements ROSETTA pedotransfer functions in R paleox diversity paleox vDiversityRest Application to Evaluate Diversity, Richness and Structure in Tropical Forests palesl etwtc An repackaging of xpdf extraction and the 'tm' package for use in text analysis paljenczy foofactors Make Factors Less Annoying palmer0914 ML_for_Hackers palmer0914 SAS_Programming palmer0914 ZestFinance palmer0914 gecko-dev palmer0914 hive palmer0914 scikit-learn.github.io palmercl Table1 Table1 R Package palmercl Table_1 palryalen ahw ahw palryalen transform.hazards pamelarussell TCIApathfinder R client for The Cancer Imaging Archive REST API pandeymanishh baseRCodes Packaged Utility Functions panhongNTU GEM GEM pankaj3009 rtrade RTrade package pankajrb pankajHello panlanfeng bignmf A Nonnegative Matrix Factorization algorithm based on alternating least squares and coordinate descent. paobranco UBL An R package for utility-based learning paodan funcTools paodan studySeu paolofantini Suprema paolofantini Supreme Useful functions for my PhD thesis on applying LDA topic models to a corpus of Italian Supreme Court decisions. paolopavan medips papabloblo innovaR papabloblo sudoku pappasd BIGDAWG Case-Control Analysis of Multi-Allelic Loci pappewaio AllelicImbalance papplegate mise R package for clearing the workspace (mise en place) parisic22 SliceAccess parismita Reg - parisni i2b2rplugin This collection of i2b2 plugins are based on a R package loaded in OpenCPU parisni paRisni R functions parklab nozzle Nozzle is a report generation toolkit for data analysis pipelines implemented in R. parksandwildlife biosysR BioSys API wrapper R package parksandwildlife wastdr An API wrapper for the WA Sea Turtle Database WAStD in R parksw3 Derivtest parksw3 fitode Fit ode using sensitivity equations parksw3 wolframR Implementing some WolframAlpha functions in R parodistefano properROC parodistefano properROCAnalysis pascalschulthess freqr Frequency-domain response analysis for R pasculescu ClusterJudge paskn topicminerhelper pasturm TofDaqR R Interface to TOFWERK TofDaq API pasturm esaora RStudio Addin to insert " = ". pasturm esaorsa RStudio Addin to insert " = ". pasturm irrsa RStudio Addins to insert or replace text. pat-s oddsratio Simplified odds ratio calculation of binomial GAM/GLM models pat-s rasterFunctions Custom raster processing functions pat-s sperrorest Parallelized spatial error estimation and variable importance assessment for geospatial machine learning patakamuri mmkvca Modified Mann Kendall test using Variance Correction Approach proposed by Hamed K.H. and Rao. A.R. (1998) and Yue and Wang (2004) patakamuri modifiedmk Non-parametric Mann-Kendall trend tests patarol dhR Data Hyperparameter in R paterijk MCDA paterijk RXMCDA The RXMCDA library for the R statistical software allows you to read many XMCDA tags and transform them into R variables which are then usable in your algorithms written in R. The library also allows to write certain R variables into XML files according to the XMCDA standard. paternogbc CA_community_succession paternogbc Rutils paternogbc learnStats paternogbc rpackage paternogbc sensiPhy R package to perform sensitivity analysis for comparative methods patng323 nw.data.r.utils R utils for NW patperry biclustpl Profile-Likelihood Biclustering (R package) patperry r-bcv R package for performing Bi-Cross-Validation of an SVD patperry r-corpus Text corpus analysis in R patperry r-frame Flexible data frames supporting keys and matrix columns (R package) patperry r-mbest Moment-Based Estimation for Hierarchical Models (R Package) patperry r-rmtstat An R package for distributions from random matrix theory patperry r-utf8 UTF-8 Text Processing (R Package) patperry rhdf5 Extremely unofficial fork of Bernd Fischer's "rhdf5" package (http://www.bioconductor.org/packages/2.12/bioc/html/rhdf5.html). patperu AriaToscana R data package containing air pollution data from Tuscany for the years 2008-2015 patperu albopop Read some 'Albo Pretorio' pages and build a RSS feed patperu effisr Client for the European Forest Fire Information System (EFFIS) API patperu rAmianto Scan column names and structure of CSV-/SHP files from code4health-amianto https://github.com/spaghetti-open-data/code4health-amianto patperu refpal patperu ropencoesione Query the OpenCoesione API patr1ckm distributr Tidy distributed computing workflows for R and Grid Engine patr1ckm mvtboost Boosted regression trees for multivariate, longitudinal, and hierarchically clustered data. patr1ckm patr1ckm A few handy R functions patr1ckm tunegbm No description or website provided. patr1ckm widetools An R package to simplify working with wide, untidy data patriciamar ShinyItemAnalysis Test and Item Analysis via Shiny patrickCNMartin ChIPanalyser ChIPanalyser patrickmdnet medicalrisk R statistical package to generate risk estimates and comorbidity flags from ICD codes. patrickreidy ag501 Carstens AG501 Electromagnetic Articulograph patrickreidy callierr Color Palettes and Scales for the Callier Center for Communication Disorders patrickreidy distdist Distances on Distributions patrickreidy phoneigen Phonetic Analyses with Laplacian Eigenmaps patrickreidy textgRid Praat TextGrid Objects in R patrickroocks rpref Development repository of the rPref package pattakosn Rworkshop R workshop focusing on accelerating vegan patzaw BED Biological Entity Dictionary (BED) pauarago tweet2r Twitter Collector and Export to SQLite and 'postGIS' paubellot DREAM_Evaluation This package is a R port of DREAM GRN evaluations. Marbach, Daniel, et al. "Wisdom of crowds for robust gene network inference." Nature methods 9.8 (2012): 796-804. http://www.nature.com/nmeth/journal/v9/n8/full/nmeth.2016.html paubellot netbenchmark This package implements a benchmarking of several gene network inference algorithms from gene expression data paul-buerkner brms brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan paul-newell evm extreme value models paul-shannon PSICQUIC R API for PSICQUIC paul-shannon ProjectiveDecomposition a demonstration for Max paul-shannon RClustergrammer an R interface to clustergrammer.js, created Ma'ayan lab's at the Icahn School of Medicine at Mount Sinai by Nicolas Fernandez paul-shannon igv-ngl genome track and protein structure viewer paul-shannon igvR a simple R interface to the igv, a java program for viewing genome tracks paul-shannon trenaSNP analyze single nucleotide variants in the context of gene regulation paul-shannon trenaViz genome track and network visualization (igv.js & cytoscape.js) for the trena (transcriptional regulatory network analysis) package paul0vinicius rmargatsni R Package to fetch Instagram functions based on their Web API. paul4forest GFPMoutput Import and explore simulations from the Global Forest Product Model paul4forest tradeflows Forest products trade flows database paularaissa dsTutorial A sever side package to illustrate the development of a horizontal Data Shield R package paularaissa dsTutorialClient A client side package to illustrate the development of a Horizontal DataSHIELD R package. paulburch PaulsTemplates My Rmarkdown templates paulburch pbtools R functions and examples from my work paulburch syssample tools for estimating the variance of a systematic sample paulburch tagr R package for the implemention of models for the estimation of abundance and demographic parameters from tagging data paulcbauer deeplr Translate in R using DeepL. paulcbauer paperpiler Functions to generate files for paperpile. paulgcurran CIE paulgovan AutoDeskR An R Interface to the AutoDesk API Platform paulgovan BayesianNetwork Bayesian Network Modeling and Analysis paulgovan QRAGadget A Shiny Gadget for Interactive QRA Visualizations paulgovan eAnalytics Dynamic Web-based Analytics for the Energy Industry paulgovan energyr An R package containing data published by the United States Federal Energy Regularity Commission (FERC) paulhendricks anonymizer Anonymize data containing Personally Identifiable Information (PII) in R paulhendricks approximate-dynamic-programming paulhendricks debates An R data package containing Presidential Debates transcripts paulhendricks describer Describe data in R paulhendricks detector Detect data containing Personally Identifiable Information (PII) in R paulhendricks earthquakes paulhendricks functools Tools for Functional Programming in R paulhendricks generator Generate data containing fake Personally Identifiable Information (PII) in R paulhendricks neurodynamic-programming paulhendricks profilr Profile data in R paulhendricks queryr Tools for querying SQL databases from R paulhendricks reinforcement-learning paulhendricks sample paulhendricks scorer Metrics for scoring machine learning models in R paulhendricks titanic An R data package containing Kaggle Titanic datasets paulhibbing TwoRegression Process accelerometer data with common two-regression algorithms paulij recommendMovies paulij tvAppR To deploy to openCPU pauljensen cutfree Random nucleotide sequences without restriction sites pauljensen loggr Easy log files in R paulklemm regression-heatmap-r-package R Package needed on the OpenCPU Server for Regression-Cube client to run paulklemm snr paulklemm snrgo paullemmens lemmens-package My personal collection of R stuffs paulmanser Trend-test-package paulmanser cafs R package to implement the CAFS methodology from Berry et al 2013 paulmanser concavex paulmanser fresco A R package for preprocessing Illumina 450k methylation array paulmanser gdi R package for integration of genomic and epigenomic data paulmeinz hpybdy paulmeinz lrHelpers This R package contains functions that help me perform my job more efficiently in the Los Rios Community College District paulmeinz lrdatapacket paulnorthrop bang Bayesian Analysis, No Gibbs paulnorthrop chandwich Chandler-Bate Sandwich Loglikelihood Adjustment paulnorthrop revdbayes Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis paulnorthrop rust Ratio-of-Uniforms Simulation with Transformation. paulnorthrop smovie Some movies to teach statistical concepts paulnorthrop stat2003 stat2003: Introduction to Applied Probability at UCL paulnorthrop threshr Threshold Selection and Uncertainty for Extreme Value Analysis paulponcet base2 Anything missing in the base R package? paulponcet bazar Miscellaneous basic R functions paulponcet checkthat Check your data paulponcet flifo Don't get stuck with stacks in R paulponcet funk Funky functional programming with R paulponcet lplyr 'dplyr' verbs for lists and other verbs for data frames paulponcet metsyn Meteo France Synop Dataset paulponcet modeest Mode estimation in R paulponcet observer Observe and check your data in R paulponcet statip Miscellaneous statistical functions in R paulponcet statoo Miscellaneous basic statistical functions paulponcet stats2 Anything missing in the stats R package? paulponcet strip Lighten your R model outputs paulponcet tribe Play with the tribe of attributes in R pauls74 Web-Crawler-UROP-Fall-2017 An R package for crawling a specific domain for structural analysis and some network algorithms. paulstaab-archive OrphanedFunctions (DISCONTINUED) An R Package to find unused functions in R packages paulstaab-archive lintrtest (DISCONTINUED) Package for testing lintr with github organizations paulstaab gfitr R bindings for the Googe Fit API paulstaab healthieR Analyse Fitness/Health data with R paulstaab jaatha-benchmark-package An R package with scripts to test Jaatha paultpearson OpenProblemLibrary paultpearson TDAmapper (R package) Analyze High-Dimensional Data Using Discrete Morse Theory paultpearson midstates paultpearson slidifyDemo paulyLin MPFE Methylation Patterns Frequency Estimation paulyLin migen pavel-fibich TRADER Tree Ring Analysis of Disturbance Events in R pavel-filatov featr Tools for routine feature processing tasks payseur highfrequency paytonjjones networktools networktools pbastide PhylogeneticEM Implementation of the EM algorithm for the detection of shifts in a phylogeny. pbenner gp.regression Gaussian Process Regression Library for GNU-R pbiecek PBImisc Tools and datasets from ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych'' [R package] pbiecek PISA2012lite datasets from PISA 2012 study pbiecek PISAtools pbiecek PogromcyDanych pbiecek PrzewodnikPakiet Przewodnik - Pakiet R do Przewodnik po progrmamie R pbiecek SPAG Indexes of spatial agglomeration pbiecek SmarterPoland Set of tools developed by the Foundation SmarterPoland.pl [R package] pbiecek archivist A set of tools for datasets and plots archiving pbiecek archivist2 Updated archivist, new function names, easier data management pbiecek bgmm Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling [R package] pbiecek breakDown breakDown plots for glm, lm and randomForest pbiecek ddst Data driven smooth test [R package] pbiecek ggplotit Just plot it in ggplot2 pblischak polyfreqs polyfreqs: an R package for Bayesian population genomics in autopolyploids pboesu DEButilities Utility functions for Dynamic Energy Budget models pboesu debinfer Bayesian inference for dynamical models of biological systems in R pboesu rucrdtw R Bindings for the UCR Suite pboesu ryanlabloggers An R package to process various microclimate logger data formats used by the Ryan lab and collaborators. pbotter42 firstPackage firstPackage pbreheny bios4120 Random question generator for BIOS 4120 pbreheny deepn Dynamic enrichment for evaluation of protein networks pbreheny epcot Exome-sequencing Paired Case-Only Tests pbreheny grpreg Regularization paths for regression models with grouped covariates pbreheny hdrm High-Dimensional Regression Modeling [book] pbreheny lassoFDRpaper Code to reproduce the results in "Estimating false inclusion rates in penalized regression models" pbreheny ncvreg Regularization paths for SCAD- and MCP-penalized regression models pbreheny visreg Visualization of regression functions pbsag airsager Tool to disaggregate AirSage OD data to a model TAZ layer pbsag ipfr Generic expansion of seed distribution to marginal targets pbsag ncstm pbsag nhtsHelper Functions to help with looking at the NHTS or other surveys. pbsag odmatrices A collection of functions for manipulating Origin-Destination data in R. pbsag outviz Output tables and visualizations for travel models pbsag swimctr Oregon SWIM v2.5 Commercial Transport (CT) Model pbsag swimr Visualizations and Reports for SWIM pbsag tcadr A library to read/write TransCAD binary files in R. pbsag westatr Standard R package for processing Westat surveys pbulsink HockeyScrapR A set of tools for collecting Hockey related data around the internet. pcahan1 CellNet CellNet: network biology applied to stem cell engineering pcdjohnson GLMMmisc R functions I use often for GLMMs pcheng84 TCGAbrowser Shiny tool for TCGA pcooman civis_visualizer pcreneau demopackage pdasg Rproject R package for units conversion pdbailey0 lfactors R lfactors package pdhoff Rduino A Microcontroller Interface pdhoff amen R package for analysis of network and dyadic data pdhoff fabCI FAB (Frequentist Assisted by Bayes) confidence interval procedures pdhoff rstiefel Simulation from distributions on the Stiefel manifold pdil usmap 🗺 R package to create US maps including Alaska and Hawaii. pdmetcalfe extrapolatr Convergence acceleration for R pdp10 sbpiper R code for SBpipe pdparker ESEM_Package R tools associated with Marsh et al. in press pdparker isco88conversion Conversion functions with ISCO as base code pdrano FinancialInstrument pdrano IKTrading pdrhlik iucnv3 IUCN Red List API v3 in R pdrhlik parmice Parallel Multivariate Imputation by Chained Equations pdrhlik phylomice mice imputation methods using phylogenetic information pdrhlik tscor Time series correlation tools in R pearcedom srvALL pearcedom survivALL pearselab nacdb Not A Community DataBase pearsonplc pearsonverse pearsonplc skelpear pearsonplc vispear peconeto safetydata Library to help aviation safety data analysts perform common tasks pecu RSummerPackages pecu test pedmiston crotchet An R package for knitting data projects. pedmiston foldit-data pedmiston forks Visualizing the garden of forking paths. pedmiston rdata R package with helpers for dealing with data in other R packages pedmiston totems-data pedro-andrade-inpe qgs R Package to open QGIS project files pedrocostaferreira BETS It provides access to and information about the most important Brazilian economic time series - from the Getulio Vargas Foundation , the Central Bank of Brazil and the Brazilian Institute of Geography and Statistics . It also presents tools for managing, analysing (e.g. generating dynamic reports with a complete analysis of a series) and exporting these time series. pedrocostaferreira BETS-package No description or website provided. pedroguarderas CFINI Computational finance routines pedroguarderas mau Decision models with R pedrohcgs kmte Treatment Effects with Censored Outcomes pedrohcgs pstest Specification test for the propensity score pedroj effectiveness_pckg An R package for plotting the effectiveness landscape of plant-animal mutualisms. pedroliman oshcba pedroliman pldatatools Personal R library for data analysis pegeler YARD YARD - Yet Another R Demo pegeler mvrt Generate multivariate t-distributed random numbers pegeler samplesizeCMH Power and Sample Size Calculation for the Cochran-Mantel-Haenszel Chi-Squared Test pegeler unemployment United States Local Area Unemployment Statistics (LAUS), Annual Averages 1990-2016 pegoenrico meteringprofile Comsume profile metering pegoraro qchlorophyll Package for geographical chlorophyll analysis pehoxx pho Build R Package Assignment peichins datatrack R package for managing and viewing dependencies between data generated in a workflow peichins dviewer Interactive visualization of datatrack dependency graph peichins userinput An R package that provides some helper functions for reading user input from the console peishenwu tidyJunyi pejovic hierNet hierNet (modification) pejovic int3D hierNet (modification) pejovic sparsereg3D pelishk brostatistics pelossof MetaGenomics Cancer Genomics R package peloyeje cadastertools [MAP536] R package with utils functions for the cadaster project peloyeje xmsctd5pkg Example package for course MAP536 - X/HEC MSc "Data science for Business" penn-wharton-budget-model plotsim R plotting routines for microsimulation data pennekampster MSSI Implements the MSSI measure for animal trajectory analysis proposed by Postlethwaite et al. 2013 in R pennekampster bemovi Bemovi, software for extracting BEhaviour and MOrphology from VIdeos pentalibra braid Report writing tools to create pdf reports in [R] pentalibra ggcluster Tools for creating cluster plots, tree plots and dendrograms using ggplot in [R] pepkit pepr An R-based project metadata manager for portable encapsulated projects perbrock sensR The sensR package development pereiramemo bgcpred BGC class abudance training and prediction pereiramemo ufBGCtoolbox_R_package BGC class abudance training and prediction perezp44 cats.personal.pjp Test to create R personal package perezp44 cats_personal_pjp Test to cretae my personal R package perezp44 mypkgDataforblog perezp44 personal.pjp perezp44 pjppkgRdata01 perezp44 pkg4albacete perishky eval.save perishky meffil Efficient algorithms for analyzing DNA methylation data. perllb deseqAbstraction function library for standard deseq pipelines perllb makeit make demo perryjiang us-college-data R package for fetching data from the U.S. Department of Education's College Scorecard perrystephenson refimpact API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database pesquisaR pesquisaR Conjunto de funções para gerar páginas HTML elegantes e funcionais a partir de dados de pesquisas de opinião. pet-estatistica labestData Conjuntos de Dados para Aprendizado de Estatística petarmimica estatusbar petebaker codebookr An R package to aid cleaning, checking and formatting data using metadata read from Codebooks or Data Dictionaries. petedodd HEdtree Utilities for decision tree like models in health economics petedodd mvregerr Bayesian Multivariate Regression with Known Measurement Error peter0083 standardev2 This repo contains learning material which is not meant for production use. A simple R function that calculates standard deviation when given a numeric/integer vector. peter159 rshtool peteraharrison PUCA PUCA peterawe CMScaller peterblattmann SWATH2stats petereckley webannor Import text document annotations as exported by WebAnno peterhalpin BearShare Some R code for Bear Seminar peterhalpin cirt Code for "Psychometric models of small group collaborations" peterhalpin hawkes R package for estimating multivariate Hawkes processes peterhalpin scirt An R package accompanying "Psychometric modeling of small group collaborations" peterhurford azureblobmpi Upload and download from Azure Blob Storage and R peterhurford batchman A wrapper for R methods to run them in arbitrary batches. peterhurford checkr Automatic verification and testing of R functions peterhurford currencyr Convert various currencies into other currencies using the Fixer.io API. peterhurford funtools Make R functions more fun peterhurford handlr Handle errors better in R peterhurford loRem Lorem Ipsum Generator for R peterhurford modelwordcloud Make a word cloud out of text associated with a model peterhurford num Specify large numbers in R using human language peterhurford pkgdeps Find CRAN dependencies for R packages the easy way! peterhurford quickcheckr Automatic testing of R functions peterhurford s3cache A persistant, cross-computer caching layer backed by the s3mpi package peterhurford s3memoize Provide a persistent, cross-machine function memoization for R peterhurford strdate Convert a relative time statement into a date peterhurford surveytools Surveytools is an old collection of R functions that, together, create a lightweight and modern workflow for analyzing survey data. It is obsoleted by Surveytools2. peterhurford surveytools2 Surveytools2 is a collection of R functions that make working with dplyr on survey analysis just a little bit better. peterhurford validations Check preconditions and postconditions in R functions. peterhurford vcr Record httr calls and play back the tapes! peterkuriyama ch4 peterkuriyama hlsimulator peterkuriyama hlsimulator_old peterkuriyama spatialvms petermeissner assignparams RStudio Addin to evaluate comma separated function parameters vio short cut petermeissner colorscraping some functions scraping color schemes from wes anderson color scheme jgps from http://wesandersonpalettes.tumblr.com/ petermeissner crossword An R package to build crosswords petermeissner diffr A package for measuring change between different versions of text petermeissner diffrprojects petermeissner diffrprojectswidget R HTMLwidget for diffrprojects projects petermeissner dip21 searching dip21 at bundestag.de from within R petermeissner documentthisfolder An R hacky-dy-hack wrapper around roxygen2/devtools to get documentation for non packages petermeissner dratful a convenience wrapper around drat and devtools petermeissner googledirections Binding Google Directions API to R petermeissner hellno R package with stringsAsFactors=HELLNO petermeissner hellnotests R package testing programming with hellno package petermeissner htab use R to produce html tables with floating header petermeissner idep petermeissner r6extended R6 object classes helper extensions - e.g. auto getter and setter petermeissner robotstxt robots.txt file parsing and checking for R petermeissner robotzeroone a webbot written in R petermeissner rtext R6 R text and data objects petermeissner spanmatcher experiments on matching time span data petermeissner statsgrokse R-API-binding to stats.grok.se server providing Wikipedia page view statistics for 2008 up to 2015 petermeissner stringb R (base) string handling with less dependencies, more convenience and less Unicode compatibility petermeissner twitter_analytics petermeissner twitterlight A lightweight functional R <--> Twitter API interface petermeissner unikonstanzmensabot Uni Konstanz Mensa / Canteen Twitter Bot petermeissner wikipediadumps Handle Wikipedia Pagecount Dump Data petermeissner wikipediatrend A convenience R package for getting Wikipedia article access statistics (and more). peterrobertcurtis SSM SSM - an R package for fitting smooth supersaturated models. petersonR bestNormalize Estimate a suite of normalizing transformations, including a new technique based on ranks which guarantees a normal transformation if there are no ties. petervdberg requireR R source code modularizer peterwhitman ExpoLog Exponents and Transforms peterwsetter kippco Misc functions for KIPP Colorado Schools Data Team peterxeno DeepBalance Ensemble of random neural networks for imbalanced class problems peterxeno ImbalancedBagR Ensemble of random neural networks for imbalanced class problems peterxeno preprocessr Preprocessing tools in R peterxeno sabermetrics-package Sabermetrics R Package petestmarie petemisc Misc useful functions petr-volkov easy-450k.core A relatively easy way to analyze 450K Illumina array petr-volkov easy-450k.plots Plotting functions for easy-450k package petr-volkov ffkill2 A relatively easy way to analyze 450K Illumina array petr-volkov ffkill2.plots No description or website provided. petrbouchal cz-presfinance petrbouchal cz-president2013 petrbouchal czgov-jobs-fixes petrbouchal czjobs-gapp petrbouchal discover petrbouchal pbtools Personal R package for reusable code and data petrelharp landsim efficient, forwards-time simulation of populations on raster-based landscapes petrelharp msarg tools to use R to create coalescent simulation scenarios on grids using ms petrelharp templater Some tools for writing and compiling reports in R+markdown. petrikemppainen LDna LDna: an R package to perform linkage disequilibrium network analysis petusan36 RLibGrap pez-espada mypkg pez-espada mypkg7 testing stuff pfh topconfects TOP results by CONfident efFECT Sizes. pfistfl loigitreg1 No description or website provided. pfpetrowski OhtaDStats Ohta's D Stat R package. PFP rotation Fall 2017 pfrater LogbooksTranslate Translate columns in the data.frames of the Logbooks package pfrater fjolstTranslate R package to translate column names of data sets found in the fjolst package to English. pgarnry RblpExtension Extends functionality of the Rblpapi package pgarnry ggplotHelper Collection of styling and design function for easily plotting ggplots in R pgarnry pgarnry.github.io pginart SNPFISHAnalysis pgiraudoux pgirbric R package pgirbric pgiraudoux pgirmess R package pgirmess pgttsang test test project ph49 philtools A collection of useful [R] stuff phamdinhkhanh VNDS phanisrikar93 fastloadR Make loading your data into database simpler pharslett PCcharts PCcharts phdornever Bjj phdornever BjjAnalyse phenomecentre peakPantheR On-instrument and post-acquisition targeted feature extraction phewson PhilsAngle Tools for interrogating photographs phgrosjean R-code Various personal R code phgrosjean aurelhy phgrosjean pastecs Regularisation, decomposition and analysis of space-time series phiala ecodist ecodist R package phiala giscolor Adds GRASS 7.0 color tables to R. phiala grassR grassR R package phiala landsat landsat R package phil8192 lazy-iris K-Nearest-Neighbors phil8192 ob-analytics Limit order book event processing and visualisation philchalmers OLScurve OLS growth curve trajectories philchalmers SimDesign Structure for organizing Monte Carlo simulations in R philchalmers faoutlier Detecting outlying and influential cases for factor analysis in R philchalmers mirt Multidimensional item response theory philchalmers mirtCAT Computerized Adaptive Testing with Multidimensional Item Response Theory philchalmers plink-archive plink package from the R archives (made public for easier installation) philchalmers plotSEMM Non-linear trends and interactions in SEM for R philescandon db110 philferriere mscstexta4r R Client for the Microsoft Cognitive Services Text Analytics REST API philferriere mscsweblm4r R Client for the Microsoft Cognitive Services Web Language Model REST API philipah1 PCcharts PCcharts philipmgoddard FUNctions philipmgoddard cppStarter philipmgoddard glmPG philipmgoddard lmPG philipmgoddard nnePtR R neural network philipp-baumann simplerspec R package that facilitates spectral model development and its application for soil FT-IR spectroscopy philippechataignon RNetezza R DBI-compliant interface to Netezza philippechataignon dplyrnz R dplyr SQL backend for Netezza using RODBC philippstats GAMBoostVis Visualisation package for R package GAMBoost (Likelihood-Based Boosting) philippstats RRmisc RRmisc phillc73 abettor An R package for connecting to the online betting exchange Betfair, via their API-NG product, using JSON-RPC. phillc73 backblazer R package for Backblaze's B2 API phillc73 pinhooker An R Package to compile data sets of historic results from thoroughbred sales phillc73 resourcer R Package for Team Resource Management phillc73 rinspace R In Space: A collection of R functions returning interesting stuff from space phillc73 sqldf2 A faster R package replacement for sqldf. Maybe. phillipf GNAFAPI philliplab EpitopeMatcher A package that can be used to find out how well the epitopes in a patient's virus' will be recognized by the HLA's present in the patient. philliplab HaplotypeTracker philliplab MotifBinner philliplab ViralHaplotyper philliplab hdsResistanceModel A Hybrid Dynamic/Stochastic Model of HIV Resistance Evolution philliplab logOfGamma Computes log or gamma for large values philliplab mochModelData philliplab modgenTester philliplab qba philliplab toolmania philmikejones apcmortality Age period cohort and mortality philmikejones checkr :white_check_mark: Easily check regression assumptions in R philmikejones geolookup Lookups for UK geographies philmikejones heateat Heat or Eat philmikejones opengis Open GIS (data, software, and tooling) lecture to UoS geography masters students, October 2016 philmikejones rakeR Tools for easy spatial microsimulation (raking) in R philmikejones thesis A Spatial Microsimulation Analysis of Health Inequalities and Health Resilience philmikejones townsendr Townsend Material Deprivation Score - 2011 Data philmu climex Climex - Climate and extreme events philsf philsfmisc philsf's miscellaneous R functions philstraforelli ggsigmark philyoun r4phil phively wranglR My most-used R scripts for data wrangling, diagnostics, and the like phjung HCEB Heteroscedastic Consistent Empirical Bayes Rate and Spatial Autocorrelation phoenixding rmethrafo methrafo R wrapper phonixor MicroPlate library to easily work with microplates in R phonixor readODS read ODS files into R as data.frames phraber lassie Select sites and sequences from a serially sampled alignment phraber meta-lass This provides an interactive shiny interface to the LASSIE package. phraber mpgram This provides an interactive shiny interface to the pixelgram package. phraber pixelgram An R package that implements paired tree (phylogram) and pixel plots to view polymorphisms among aligned sequences. phuais mlandr phuais multilandR phubers erlang Erlang C functions in R, for use in contact centers phuongdvk47 RPkgHello Getting start with Hello Package in RStudio phylotastic Pt_WSExecution_MachineReadable phylotastic datelife R package containing datelife's core functionality phylotastic rphylotastic R package to interact with phylotastic web services phytomosaic ecole Teaching ecological tasks, algorithms and model fitting piLaboratory GillesCom Gillespie Simulation of Ecological Communities Dynamics piLaboratory sads R package for fitting species abundance distributions picasa agridatasets Open datasets for crop modeling describing climate and soil in France. picasa rheliaphen Tools for phenotyping and modeling with the Heliaphen sunflower phenotyping platform. picasa rsunflo Tools for phenotyping, simulating and modelling with the SUNFLO crop model pichaio thainltk Thai National Language Toolkit in R pierrejacob BatteryMCMC Scripts to perform particle MCMC on Battery non-Markovian models pierrejacob CoupledCPF Coupled Conditional Particle Filters pierrejacob CoupledPF Coupled Particle Filters pierrejacob RShapeTarget R package to create toy target distributions based on SVG files and on strings pierrejacob bettertogether reproduces experiments in arxiv.org/abs/1708.08719 pierrejacob debiasedmcmc Unbiased Markov chain Monte Carlo with couplings pierrejacob winference R package to perform statistical inference in generative models using the Wasserstein distance pierreroudier asdreader Reading ASD Binary Files in R pierreroudier clhs A R implementation of the conditioned Latin Hypercube Sampling method pierreroudier disctools Set of simple tools to handle and modify spatial discs or circles pierreroudier dissever Dissever: a method for spatial downscaling pierreroudier inspectr Handling and analysis of Vis-NIR spectra in R pierreroudier prtools Set of utilities for spatial data analysis in R. As a ggplot2 addict, I prefer to plot my spatial data with that package. I'm trying to develop a few wrapper functions for that purpose here.Have to think of a better name for that package, really. pierreroudier specstore A set of S4 classes and methods to store and manipulate (vis-NIR) spectra. pierreroudier spectacles Handling and analysis of Vis-NIR spectra in R pierreroudier spemd pierrickrogermele r-msraw-parser An R package for parsing MS Raw files, using C++ library msraw-parser. piersharding RMDX RMDX is an XML/A OLAP MDX interface piersharding RMonet MonetDB interface for R based on the mapi C client library piersharding RPentaho R Connector for Pentaho via CTools CDA and CDB interface https://github.com/webdetails piersharding RSAP SAP NW RFC connector for R piersharding dplyr-calcite piersharding dplyrimpaladb R dplyr connector for ImpalaDB pierucci criseCompare Outils pour comparer des listes. pierucci heemod :chart_with_upwards_trend:Markov Models for Health Economic Evaluations pierucci rgho :globe_with_meridians:Access WHO Global Health Observatory Data From R pierzgal dispam Simulate Election Results and Measure Disproportionality of Apportionment Methods pierzgal disprr A Computer Simulation Study on the Effect of District Magnitude on Disproportionality in PR Elections pieterbeck CanHeMonR pieterprovoost landr Determine how far inland point coordinates are located pieterprovoost parsnip Parsing geographical coordinate strings pieterprovoost pieter Personal R functions pieterprovoost rwkt R package for converting WKT to GeoJSON pieterprovoost worms R package for consuming the WoRMS webservice pietervsd INBOmisc Misc R functions for INBO pietervsd r-aquachem R scripts voor de watervalidatie vooraleer gegevens in aquachem bewaard worden pietrofranceschi HomogenMSI Set of functions to estimate homogeneity in MSI datasets pietrofranceschi Metabodemo Demo for the EBI metabolomics course pietrofranceschi xcmsAddons Package with useful addons for xcms pik-piam gdx R package | readGDX package for R pik-piam lucode R package | Landuse Coding Tools pik-piam luscale R package | Landuse Scaling Tools pik-piam lusweave R package | Landuse Sweave Utilities pik-piam madrat R package | May All Data be Reproducible and Transparent (MADRaT) pik-piam magclass R package | Data Class and Tools for Handling Spatial-Temporal Data pik-piam magpie4 R package | MAgPIE outputs R package for MAgPIE version 4.x pik-piam magpiesets R package | MAgPIE sets for R pik-piam mip Model intercomparison visualization package piklprado sads R package for fitting species abundance distributions pilrhealth pilr.api.r An R package to simplify reading and writing data through the open PiLR API. pilrhealth pilrdash-template Simple template for creating custom dashboards for PiLR pilrhealth pilrdpu-template Template for creating a PiLR DPU in R pimentel cluster A version of the R package 'cluster' with a parallel implementation of 'clusGap' pimentel fscca Fast Sparse Canonical Correlation Analysis (fscca) implementation using NIPALS SCCA and Rcpp. pimentel haRold A R package with miscellaneous functions I regularly use pimentel mamabear The mama bear ensures the cubs are in line! pimentel sccab Sparse Canonical Correlation Analysis Biclustering pinduzera genlogis generalized logistic distribution pingles redshift-r Small R package for accessing Redshift pingqingsheng Robot0001 pinhuang Crystal pinhuang0317 4800.Final.Project-KC.P.Production- pinin4fjords shinyngs Shiny apps for NGS etc based on reusable components created using Shiny modules pink-sh CCAMLRLibrary pink-sh CMSYRPackage pink-sh FAOLibrary pink-sh TunaAtlas pink-sh TunaAtlasLibrary pink-sh WPSClient piotrek-orlowski affineModelR R package for working with multifactor stochastic volatility models, as in Duffie, Pan and Singleton (2000) 'Transform Analysis and Asset Pricing for Affine Jump-Diffusions' piotrek-orlowski diveRgence This package extends the highfrequency package with estimators of realized divergence measures. piotrek-orlowski divergenceModelR Pricing and estimation algorithms for affine jump diffusion models for divergence contracts (see Schneider and Trojani, ``Divergence and the Price of Uncertainty'') piotrek-orlowski transformOptionPricer Characteristic-function based option pricer. piotrek-orlowski ukfRcpp Quick and dirty implementation of the Unscented Kalman Filter with Additive Noise for State Estimation, see algorithms in pp. 108-109 and 115-116 of 'Sigma-Point Kalman Filters for Probabilistic Inference in Dynamic State-Space Models', R. van der Merwe, PhD Thesis, OGI School of Science and Engineering piotrp1 fars_tools piotrp1 farstools piotrsobecki rdmdecon Roadmap based deconvolution pipinho13 PackageForCoursera piquelab QuASAR Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data piquelab multiclassLR multinomial logistic regression model for MESH output pitakakariki common-climate pitakakariki simr Power Analysis of Generalised Linear Mixed Models by Simulation pivotalsoftware DSWorkshop pivotalsoftware PivotalR An convenient R tool for manipulating tables in PostgreSQL type databases and a wrapper of Apache MADlib. piyush-kgp cats try installing package from github piyush96 LSTModis pjnewcombe ApproxBayesMeta pjnewcombe Pmisc My miscellaneous R functions pjnewcombe R2BGLiMS R wrapper for a Java Bayesian GLM variable selection package pjpalla RFmarkerDetector pjpalla divamo pjpalla dummyR A dummy R repo pjpalla flight pjpalla topten Functions from building and predictiong from models from selecting the Top 10 features pjpo mfactor revisited factor for rcran with multiple labels pjshort ClinStudyWeb This package was developed by Tim Rayner at the CIMR (Smith Lab) but has disappeared from CRAN/Bioconductor. Adding latest stable release to my page for anyone in the group to use. pjshort SmithLabArray This package was developed by Tim Rayner at the CIMR (Smith Lab) but has disappeared from CRAN/Bioconductor. Adding latest stable release to my page for anyone in the group to use. pjshort denovoTF Calculating change in binding affinity for predicted TF binding sites as a result of de novo mutations in non-coding regions. Uses JASPAR database for TF binding prediction. pjshort rupit Significance testing for recurrence of de novo regulatory mutations. pjshort wgcna_corr Using Weighted Gene Coexpression Network Analysis (WGNCA) to analyze microarray data for correlations between gene modules (groups of genes with similar expression profiles) and phenotypes. pjumrustanasan wstudent rpackage pkimes SigFuge SigFuge (Bioc-devel) git repo pkimes glmargin generalized large-margin classification pkimes pkimes R/pkimes package pkimes sigclust2 tests for statistical significance of clustering pkimes spliceclust visualization tools for exon/junction coverage pkoki dothis A very basic "To Do" List for Rstudio pkopps biview pkopps gbiview pkristoff TicTacToeImpls pkristoff tttShiny pkrog biodb An R package for accessing biological and chemical databases. pkuhnert LRE Loads Regression Estimator pkuhnert VizU R package for visualising uncertainty in spatial data pkvreddy shinypkv pl90 RTutorAirports RTutor Problem Set about the development of german airports placeboo subgraph list graphs of a given name planetMDX Fibor generating Fibonacci numbers planit-group Rplanit plannapus CONOP9companion Tools for integrating biostratigraphic software CONOP9 in a statistical workflow plantarum binner An R package for reading ABI fsa capillary files, and conducting various fragment analyses. At this point AFLPs, but microsatellites (SSRs) are also planned. plantarum flowPloidy An R package for flow cytometry histogram analysis plantarum flowPloidyData R package containing flow cytometry data files for use with the flowPloidy package plasmonics dielectric physical constants and dielectric functions commonly used in optics, plasmonics plasmonics mie Mie theory for electromagnetic scattering by spherical objects plasmonics planar Electromagnetic fields near planar interfaces. plateforme-stlouis Ty Insertion, R and Howard platipusc captchaTJRS quebrador de captcha do TJRS platypus1989 PathMatch R package for path matching utilizing Ramer–Douglas–Peucker algorithm plejeail Rpp R package for fast and useful functions plejeail Wrapper R package for features selection plejeail fcc Functional Clustering & Classification plexxx myAssignment repository created in order to work on some assignment for Coursera course "Building R Packages" plger RNAontheBENCH A benchmarking resource for RNAseq quantification and differential expression analysis methods plger iPSCpoweR transcriptomics-based evaluation of experimental designs for iPSC disease modeling plgrmr packages plgrmr readAny Read any type of text in r plgrmr readKor plgrmr seoulmap pli2016 anomalous pli2016 forecast pll21 pKSEA plogacev mvmstan R package which simplifies specification of multivariate mixture models in Stan (mc-stan.org). ploverso-pgdx savR savR branch pmarchand1 waver R package to calculate fetch length and wave energy pmarjora numint For workshop on producing R packages pmartR pmartRdata pmartR pmartRmems pmartR pmartRqc pmartR pmartRseq pmartinezarbizu RFtools Miscellaneous Tools For Random Forest Models pmaurogut SAEfunctions SAE functions in R pmckenz1 biogeography Biogeo project pmckenz1 boardmakr Analyze chess games. GEOL590 final project. pmckenz1 matrixranger Biogeo project pmckenz1 mcpdiversity Used to solve integer-programming problems encountered during my undergraduate thesis. pmckenz1 task9package A meaningless package for GEOL590 pmdci Redmonder Redmonder palettes pmirla lion lion opencpu pmoulos metaseqR An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data pmoulos metaseqR-local An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data pmoulos metaseqr An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data pmoulos recoup Genomic coverages remastered! pmoulos recoup-local Genomic coverages remastered! pmoulos recover Genomic coverages remastered! pmterry normedvec normedvec pmterry packghubtut packghubtut describes prepn package, biocStyle vignette, connecting to github, downloading by users pmur002 DOM Drive web browser content from R pmur002 animaker Generate animation timelines in R pmur002 director R package to automate recording of R demonstration videos from an XML script file pmur002 ffmpeg Tiny R package interface to ffmpeg pmur002 gridgraphics Redraw base graphics as grid graphics pmur002 grimport Automatically exported from code.google.com/p/grimport pmur002 hexview The 'hexView' package for R pmur002 metaplot Flexible forest plots in R pmur002 oaglue prototype R-based glue system for openapi project pmur002 rdataviewer Automatically exported from code.google.com/p/rdataviewer pmur002 rolocISCCNBS A 'roloc' colour list and colour metric based on the ISCC-NBS System of Color Designation pmur002 wmctrl Tiny R package interface to wmlctrl command on Linux pmur002 xdotool Tiny R package interface to xdotool command on Linux pneuvial adjclust Adjacency-constrained hierarchical clustering of a similarity matrix pneuvial c3co Infering cancer cell clonality from copy-number data pneuvial c3co-data External data for the c3co package pneuvial sanssouci Post hoc inference through JFWER control pnnl LocalHomology pnnl Smisc Sego Miscellaneous: A collection of functions for statistical computing and data manipulation in R pnnl atlas pnnl bernstein-2017-founders-species pnnl glmnetLRC Lasso and Elastic-Net Logistic Regression Classification with an Arbitrary Loss Function pnnl prepPackage Pre-processing routine for pnnl R packages pnnl qFeature Extract features from time series using moving windows of regression fits pnnl rsed Stream editing in R: Manipulating text files with insertions, replacements, deletions, substitutions, and commenting pnnl thtracker pnovack-gottshall KScorrect R package for Lilliefors-corrected Kolmogorov-Smirnov goodness-of-fit tests pnovack-gottshall ecospace R Package for Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks pobsteta gftools Forest Management Tools pocdata oliveR pocdata pocr pocr package poceviciute AdvRprogr_lab4 poceviciute AdvRprogr_lab6 podTockom medltmle R/medltmle: Estimation for Natural Mediation Effect in Longitudinal Data podTockom tstmle01 R/tstmle01: Estimation and Inference for Causal Effects with Single Binary Time Series pohlio tidyinftheo A few information theoretic R routines in 'Tidyverse' style. poipou CytoSEE a new R based shiny app for clustering poissonconsulting bauw An R data package for Bayesian Analysis Using Winbugs poissonconsulting checkr A lightweight R package to informatively check the classes, values, names and dimensions of scalars, vectors, lists and data frames poissonconsulting creelr An R package to Analyse Creel Survey Data poissonconsulting datacheckr An R package to check data frame's rows, column names, column classes, values, unique keys and joins poissonconsulting datalist A DEPRECATED R package to format data.frames and lists of data for input to JAGS, WinBUGS and OpenBUGS poissonconsulting dbr R Packages as Databases poissonconsulting deckr Data Frame Column Name, Class and Value Checking poissonconsulting fishbc Fish Codes for British Columbia poissonconsulting haidagwaii poissonconsulting jaggernaut An R package to perform Bayesian analyses using JAGS (Just Another Gibbs Sampler). poissonconsulting jmbr An R package to facilitate analyses using JAGS poissonconsulting juggler A DEPRECATED R package to query and check JAGS model code poissonconsulting juggler2 A DEPRECATED R Package to Manipulate JAGS Model Code poissonconsulting klexdatr Kootenay Lake Exploitation Study R Data Package poissonconsulting klexr Kootenay Lake Exploitation R Analysis Package poissonconsulting kootfwa An R package of the BC Freshwater Atlas Data for the Kootenay Region poissonconsulting kootlake An R package of annual Rainbow Trout and Kokanee datasets for Kootenay Lake poissonconsulting kootqlt An R Package to download discharge, elevation and temperature data for West Kootenays poissonconsulting lexr Plots and Analyses Lake Exploitation Acoustic Detection Data poissonconsulting mbr An R package of utility functions and virtual classes for the model builder family of packages. poissonconsulting mcmcr An R package to manipulate MCMC samples poissonconsulting mwst2 Mountain Whitefish Spawn Timing R Analysis Package poissonconsulting mwstdatr Mountain Whitefish Spawn Timing R Data Package poissonconsulting newdata An R Package to Generate New Data Frames for Predictive Purposes poissonconsulting poisbc An R package to load R packages for Poisson analyses for British Columbia poissonconsulting poiscon An R package of utility functions used by Poisson Consulting Ltd. poissonconsulting poisdata An R package of Poisson Consulting's data handling functions poissonconsulting poisix An R package of Poisson Consulting's date time functions poissonconsulting poiskoot An R package to load R packages for Poisson analyses for the Kootenays poissonconsulting poismap A DEPRECATED R Package for Mapping poissonconsulting poispkgs Attaches CRAN and GitHub R packages used in Poison Consulting scripts poissonconsulting poisspatial An R package to create and manipulate spatial objects poissonconsulting poissqlite An R package to facilitate working with SQLite databases poissonconsulting poisutils An R package of Poisson Consulting's utility functions poissonconsulting ranmr Loch Rannoch Ferox Trout Mark-Recapture Analysis poissonconsulting ranmrdata Rannoch Ferox Trout Mark-Recapture Data poissonconsulting reporting Company R package for generating reports from R markdown and markdown files poissonconsulting rescale An R package to centre and standardize variables based on the values in a second data frame poissonconsulting rpdo An R Package of Pacific Decadal Oscillation Index Data poissonconsulting rtide R package to calculate tide heights poissonconsulting sglekwy Sage Grouse Lek Observations for Wyoming poissonconsulting sgpd Sage Grouse Population Dynamics poissonconsulting sgpd2 Sage Grouse Population Dynamics R Analysis Package poissonconsulting sgpdatr Sage Grouse Lek Areal Disturbance R Data Package poissonconsulting skeleton Creates skeleton for new PCL project poissonconsulting skeletonpkg A Skeleton for Poisson Consulting R Packages poissonconsulting smbr R package to facilitate analyses using STAN poissonconsulting subfoldr An R package to control the saving and loading of objects to a subfolder. poissonconsulting timer An R Package of a simple timer as an R6 class poissonconsulting tmbr An R package to facilitate analyses using TMB poissonconsulting tulip Poisson Consulting's Utility Functions poissonconsulting vectorcheckr An R package to informatively check atomic vector classes, values, lengths, uniqueness, sorting and names. poissonconsulting yesno An R package to ask user whether yes or no polak51 WitOMI poldham lensr A package to access patent data from the Lens Patent Database poldham oldhammisc Miscellaneous Functions poldham opsrdev Development version of opsr package to access EPO Open Patent Services API poldham wipo_training poliu2s moonplot A R HTMLWidget that displays a moonplot for correspondence analysis. poliu2s numbers pollyvote pollyvoter R package for aggregating components, calculating forecasts, and determining errors. pommedeterresautee projector Project Dense Vectors Text Representation on 2D Plan pommevilla mcint pontikos flowBeads Bioconductor package for working with calibration beads in flow cytometry. pontsuyu pitchRx2 Tools for scraping MLB Gameday data and Visualizing PITCHf/x pontsuyu retrosheet Get MLB data from http://www.retrosheet.org/ **under construction** pontsuyu rowpy An RStudio addin for running only selected lines in your python script pooranis maaslin poorbaby r_package_sha R Package for sleep and health analysis pooya1991 BillioR poplav hackernews4r HackerNews API Client in R portokalh adforesight potterzot CausalChinaShock Reproduction and extension of "The China Shock" by Autor, Dorn, and Hanson (2016). potterzot cbcct Watch potterzot kgRainPredictR Rain Prediction package for Kaggle Competition potterzot livingwage Analysis of the living wage with bayesian structural time series models and causal impact. potterzot nap-r Package of misc. R functions, etc... for frequent use potterzot napr Package of misc. R functions, etc... for frequent use potterzot napr.data Commonly used data sets available in R. potterzot project-template Template for reproducible research potterzot researchTools R tools for research and writing potterzot rkclass K-class methods for instrumental variables regressions including OLS, two-stage least squares, LIML, Fuller, and generalized K-class methods. potterzot rnassqs R interface for the NASS QUICK STATS API pouryany pathwayDisturbance powellcenter-soilcarbon soilcarbon R package to analyze soil carbon created by Powell Center working group ppanko irtPlot irtPlot package for R: General Item Response Theory plotting pparacch fars Final assignment connected with "Building R Packages" module (Mastering Software Development in R, JHU - Coursera) ppdragondw Key2Enrich An all-in-one R/Bioconductor package for gene list enrichment analysis and pathway visualization ppernot rgumlib Set of R functions designed to perform and report uncertainty propagation ppham27 setsim Software tool for the visualization of confidence regions in statistical models pprzetacznik pythonTestPackage Sample R package with some functions implemented in Python pquinones POS Addition to oraOS prabhasp formhub.R http://sel-columbia.github.com/formhub.R prafols rMSI R MSI Tools prafols rMSIproc rMSI processing methods using C++ Boost library pranithavangala SeqGL_pv prash16 circlefunction prash16 rstandard praster1 BN_Data_Generator R function for Bayesian Network Data Generation praster1 D3_Practice praster1 Datasets prathmeshchaudhari PCR prathmeshchaudhari Package pratikpitreds nlCor prattle-analytics pRattle R package for accessing the Prattle API praveenbas myMiscFunc miscellaneous functions in R prbr planreadr prcwiek pmetar Processing METAR weather reports package prd90 simplePerc prechelt agsemisc miscellaneous plot and stats helpers for R, in particular panel.bwstrip and panel.xy predict-r rtika R Interface to Apache Tika prestevez crimeineq crimeineq: An R package to examine crime inequality prestevez crimesci crimesci: An R package with statistical tools for analysing crime scientifically prestevez estevez Personal R package of useful functions prestevez vicarp Personal R package of useful functions prestevez victim Personal R package of useful functions prestodb RPresto DBI-based adapter for Presto for the statistical programming language R. prettyprint prettyprint A suite of R functions that print values in a way that humans can easily understand. pridiltal oddstream oddstream {Outlier Detection in Data STREAMs} :fish: :fish: :fish: :fish: :tropical_fish: :fish: :fish: :fish: :fish: :fish: :fish: :fish: :fish: pridiltal stray priesgo TCGAome primitybio controlflow-rtk R API client library for controlflow princyparsana netpca GSEA of PCA, and eventually subtype finding prioritizr prioritizr Systematic conservation prioritization in R prioritizr prioritizrdata Conservation planning data sets prioritizr prioritizrshiny Eventual home of the prioritizrshiny package, which will be a GUI for solving prioritizr problems prioritizr prioritizrutils Utilities for the prioritizr package priscian climeseries Download, aggregate, process, and display monthly climatological data. priscian jjmisc Various R functions to aid report creation. priscilakoeller PKGPK priscilleb pack2 My first package with RStudio privefl bigsnpr R Package for the analysis of massive SNP arrays. privefl bigstatsr R package for statistical tools with big matrices stored on disk. privefl latex2png R package to convert some Latex outputs to png in order to be used in HTML documents. privefl mmapcharr Memory-map text files of characters as R matrices privefl mypack In-progress package for analysis of SNP arrays. privefl pixelart R Package to make Pixel Art models privefl prettyjekyll Convert R Markdown Pretty Document to Jekyll Markdown. privefl primefactr [On CRAN] R package that uses Prime Factorization for computations. priviere PPB An R package that provides severals examples of workflow of analysis that can be used in PPB programmes priviere PPBformations An R package that gather functions and packages used in PPB_formations_FR priviere PPBstats An R package to perform analysis found within PPB programmes priviere shinemas2R An R package to visualize outputs from the data base Seed History and Network Management System (SHiNeMaS) prk327 AtConP Data Preparation prk327 Experi_1 A Grammar of Data Preparation prmac slatkin.maddison prmunoz AGHmatrix An R package to compute relationship matrices for diploid and autotetraploid species pro-ai r_lib probinso lutilities problemofpoints reservetestr Provides a Framework for Testing Loss Reserve Methods processadd rWidget Dynamically create htmlwidgets in non-R env. prodipta bsoption Package for option pricing and volatility calibration for index (and FX) options prodipta gquote R package for intraday market data download from Google or Yahoo Finance prodipta kiteconnect3 R package for Kite Connect API prodipta sendText Send a string as text to your mobile using Twilio API service prodipta techchart R package for time series technical feature extraction - See package vignette for more details professorbeautiful DUE Dose utility explorer professorbeautiful IdMappingRetrieval IdMappingRetrieval for bioconductor professorbeautiful LevinsLoops Playing around with Richard Levins's loop models, extending LoopAnalyst professorbeautiful NNTbiomarkerHome NNT-based design for biomarker validation studies professorbeautiful shinyDebuggingPanel shinyDebuggingPanel R package. You can include this panel in any shiny project. profpetrie regclass profrichharris MLID MLID projdiario rDOU projecttsinteger tsintegerpackage R package for analysis of time series of counts prontog multifwf Read a table of fixed width formatted data of different types into a data.frame for each type. protViz SRMService Provides reports for quantitative mass spectrometry data. protViz TargetDecoyFDR Compute False Discovery Rates Given Score and Target Decoy Information protViz bibliospec provides a reader and a R reference class for bibliospec files protViz cdsw Computing Dynamic SWATH Windows protViz cswd Computing Dynamic SWATH Windows protViz dScipa Detecting significant changes in protein abundance protViz msqc1 No description or website provided. protViz p1755 methods to help analyse project p1755 protViz pepfdr protViz protViz Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics protViz prozor Determine minimal Protein set given list of peptide protein mappings and various weighting functions protViz quantable Streamlines descriptive analysis of quantitative mass spectrometry data. protViz topGOUniProt Uniprot ID goterm mappings for package topGO proto4426 PissoortThesis R package and main repository of my master's thesis in Statistics proto4426 ValUSunSSN R package for consulting project protobi protobi-r R library to import/export data between R and Protobi prpatil healthvis Interactive health visualizations in R prpatil repfigure R package for generating a reproducibility/replicability study comparison visualization prpatil scifigure R package for generating a reproducibility/replicability study comparison visualization prpatil tdsm Templated Deterministic Statistical Machines pryabinin ComplexID przytu1 rp R Platform helper package ps-pat ncw R package for working with NEXUS formatted data. psadil ber Boundary Extension with CFS analyses psadil cfsBayes psadil ntf psadil utilityFns pschmied snupassr Get credentials from lastpass cli in R pschulam-attic trajclust Cluster trajectories pshannon-bioc BrowserHeatmap An interactive d3 heatmap created from, and interactive with, an R session pshannon-bioc graph the bioc graph class, an experiment for github psikon cuffgo R package for processing cufflinks trancriptional data, especially read and write operations and working with GO ontologies psirusteam samplesize4surveys Compute proper sample sizes under complex sampling designs psobczyk dhmm Duration Hidden Markov Model (semi-markov hidden model) psobczyk geneSLOPE GWAS with SLOPE psobczyk giosAPI A set of tools that provide access to the GIOS air quality data API psobczyk pesel Automatic estimation of number of principal components in PCA with PEnalized SEmi-integrated Likelihood (PESEL) psobczyk public_varclust R package for variable clustering psobczyk reporteR R package for creating and managing reporducible reports psobczyk varclust Variable Subspace Clustering package in R psoerensen qgg Statistical tools for Quantitative Genetic Analyses psolaimani BenchmarkR a simple benchmark/profiling tool for R scripts psolaimani BiocInstaller BiocInstaller psolaimani benchmaRk a simple benchmark/profiling tool psolymos KnockKnockJokes R package for Knock-Knock Jokes psolymos PVAClone Population Viability Analysis with Data Cloning in R psolymos QPAD Calibrating indices of avian density from non-standardized survey data psolymos ResourceSelection Resource Selection (Probability) Functions for Use-Availability Data in R psolymos bragging Bootstrap smoothing GLM with branching forward selection psolymos contrib Contributions to the various R packages. psolymos detect R package for analyzing wildlife data with detection error psolymos footprintchange OpenCPU app for human footprint change in Alberta psolymos intrval Relational Operators for Intervals psolymos mefa R package for multivariate mata handling in ecology and biogeography psolymos mefa4 R package for multivariate data handling with S4 classes and sparse matrices psolymos mep Marginal Effects Plots for Regression Diagnostics psolymos opticut Likelihood Based Optimal Partitioning psolymos pbapply Adding progress bar to '*apply' functions in R psolymos pbapplyDepends Depends: pbapply psolymos pbapplySuggests Suggests: pbapply psolymos sharx Models and Data Sets for the Study of Species-Area Relationships in R psych10 psych10R R package for Psych 10 at Stanford psychemedia htmlwidget-hexjson Simple htmlwidget for displaying hexjson maps psychemistz BICLIC Biclustering algorithm developed by BISYN Lab @ KAIST psyflo careless psyphh lslx Semi-Confirmatory Structural Equation Modeling via Penalized Likelihood ptaconet rtunaatlas rtunaatlas ptagliolato vlab ptaranti coppeCosenzaR pteetor tutils Utility functions for Tau applications pterzian CloudKicker Design to store my functions pterzian GetToIt forMeToGitToIt ptins feelingreddit Play around with Reddit comments ptitle rangeBuilder rangeBuilder is an R package for occurrence filtering and the generation of species range polygons ptitle speciesRaster indexing of species by cell and calculation of community metrics ptl93 AEDA ptl93 deeplearningtle This repository has the purpose for implementing deep learning algorithms ptl93 tledev This repository has the purpose of developing a R package called 'tledev'. ptompalski UsefulRFunctions publicprep Rppn publicus r-veccompare The veccompare package for R. puppetleek LeekGroup3 puppetpeng PengGroup purplezippo quantler tools for quant issues using r pveber delme pveber morse Companion R package for MOSAIC website pvermees ArArRedux R package for 40Ar/49Ar data reduction and error propagation pvermees IsoplotR An R version of Isoplot pvermees IsoplotRgui Shiny user interface to IsoplotR pvermees provenance R package for statistical provenance analysis pvictor shinyWidgets shinyWidgets : Extend widgets available in shiny pvisser82 earthquakedata pvisser82 fars pvrqualitasag ATDAProjectPlan Project plan for ATDA-ASR pvrqualitasag AadeJaxWsPrototypeDocu Protocol documentation for Prototye JAX-WS pvrqualitasag AdisDataExportArgus Übersicht über ADIS-Export aus ARGUS pvrqualitasag AtdaAsrProjectTestFinalDocu Description of results of testing phase of project ATDA-ASR pvrqualitasag DeRegressEbv De-regressing EBVs based on the paper GTF2009 pvrqualitasag IcarAdeSpezTransDE Translation of specification of ICAR-ADE to German pvrqualitasag ImsDataTransferSimulation Simulation von Testdaten für ImsDataTransfer pvrqualitasag JavaEE7FrontEndWebAppDev Presentation material form course on Java EE 7 FrontEnd webapplication development pvrqualitasag KommentareElBgsSL Comments on project eBGS pvrqualitasag PedigreeFromTvdData pvrqualitasag RQualArgusDbCon Connection from R to Oracle DB pvrqualitasag RZwToExcel Data transfer from R to Excel using openxlsx pvrqualitasag SophieIntroCpp Introduction to programming in C++ pvrqualitasag rqudocfmt Rmarkdown document formats used at Qualitas AG pvrqualitasag rqudocuhelper Document helper for Qualitas documents pwinskill EPICYST Cysticercosis modelling project pwkraft ArfimaMLM Dev version of ArfimaMLM package pwkraft pmisc Collection of convenience functions for R py5gol geogen My first R package! Functions related to spatial analysis and ecological/genetic data. py5gol python pydemia unipyr unipy package repository for R. pysgodfach Rrand pysgodfach testpackage testing 1,2,3 pzawistowski astar A* algorithm implementation dedicated for educational purposes. pzawistowski caen pzawistowski rGMDH R implementation of Group Method of Data Handling regression method. pzhaonet beginr an R package for beginners pzhaonet bookdownplus The easiest way to use R package bookdown for writing varied types of books and documents pzhaonet mf An R package including Micrometeorology Functions pzhaonet mindr an R package which converts markdown files (.md, .Rmd) into mindmaps (brainstorms) pzhaonet pinyin an R package for converting Chineses characters into pinyin pzhaonet postr A R package to produce posters pzhaonet rmickey A demo R package for beginners to generate a new R package pzhaonet rpkg a demo for creating a new R package pzwiernik LatentClass Latent class models pzwiernik StructuralEM Structural EM algorithm for Gaussian latent tree models pzwiernik mtp2 Multivariate total positivity of order 2 pzylstra frame_r R interface and support functions for FRAME: Fire Research and Modelling Environment qbotics Rpolyhedra A 142 polyhedra Database scraped from PHD as R6 objects and RGL visualizing capabilities. The PHD format was created to describe the geometric polyhedron definitions derived mathematically by Andrew Hume and by the Kaleido program of Zvi Har'El. qcsong MetaIO Meta-Analysis R Package for Industrial-Organizational Psychology (based on Schmidt & Hunter, 2014; artifacts corrected individually) qcsong MetaInd R Package for Conducting Meta-Analysis with Individual Correction of Reliability and Range Restriction qenvio dryhic qenvio dryhicdata Some data to use with dryhic package qenvio hicutils A minimal R package with some useful functions for HiC data analysis qenvio hicvidere qgeissmann dhms An R package to represent experimental time in days, hours, minutes,seconds qguibert actif Actif BE qguibert be be qguibert canton Canton qguibert initialisation qguibert passif Passif BE qianlin-qz AnalyseDD qiaoyuet foofactors Make Factors Less Annoying qingyuanzhao CrossScreening Cross-screening is a new method that uses both random halves of the sample to screen and test many hypotheses. It generally improves statistical power in observational studies when many hypotheses are tested simultaneously. qingyuanzhao mr.raps R package for two-sample Mendelian randomization using the robust adjusted profile score qingyuexu bioparser qinzhu PIVOT.data qinzhu PIVOT.launcher qiongjia pro2 qiongliu1023 GenomeSizeEstimate This package is developed for R programming course CPSC 499 qiongliu1023 R_class This project is just a test qiwei-li fidcMC R package for analyzing DTMC (discrete-time Markov chain) and CTMC (continuous-time Markov chain) in both finite and infinite stage settings qiwei-li infiniteMC R package for analyzing DTMC (discrete-time Markov chain) and CTMC (continuous-time Markov chain) in both finite and infinite stage settings qiwei-li mmfit R package for fitting distributions (single or mixture) to data qkdrk777777 DUcj qkdrk777777 Ducj qkdrk777777 lotto qkdrk777777 my1 qkdrk777777 r4issactoast qkdrk777777 test qomaio rhli R access to FAME HLI. qomaio seamlessR Routines to access FAME from R qpcg MEM qpcg irtND qpsy clime2 efficient clime qpsy hotelhd qpsy nonnest2 qq29452747 FianlReport qrat plaint PlainT: Plain Table Markup Language qsb300 sphscvrco Calculate Second Virial Coefficient for Spherical Potential qstokkink apng APNG creation from multiple PNG files in R qsz13 LANDD using Liquid Association for Network Dynamics Detection qsz13 LAS qsz13 LAS-release quadrama DramaAnalysis An R package for analysis of dramatic texts quainialberto argos2016 R package reproducing Gagliardini, Ossola, Scaillet 2016 "Time-Varying Risk Premium in Large Cross-Sectional Equity Data Sets" quandl quandl-r This is Quandl's R Package quang-huynh MLZ R package for mean length estimators and extensions quanteda quanteda An R package for the Quantitative Analysis of Textual Data quanteda quanteda.corpora A collection of corpora for quanteda quanteda quanteda.data Additional corpora and other data to supplement quanteda quanteda readtext an R package for reading text files quanteda spacyr R wrapper to spaCy NLP quantide ispoc ispoc quantide linpe quantide mapIT Easy plot Italian maps with R and ggplot package quantide one simplest R package for tests quantide qdata quantifish TagGrowth A method for estimating growth parameters using tag-recapture data with known ages. quants-ch Strategy R Package to test customized quantitativ trading strategies based. quantumelixir radx Automatic Differentiation in R quartin renamer Quickly add a new script to a workflow by automatically renumbering the existing scripts. quassinja mytestpkg rubish quentingronau bridgesampling R package for bridge sampling quicklizard99 Basingstoke Food-web structural models in R quicklizard99 Homeric Doughnut plots for R quicklizard99 cheddar Analysis and visualisation of ecological communities in R quicklizard99 gruyere Population dynamics in the style of Yodzis and Innes (1992) in R quicksea source quicksea workutil work utility qunfengdong DMBC A Bayes classifier based on the Dirichlet-Multinomial distribution qunhualilab CCR Fit the correspondence curve regression qunhualilab gIDR qunhualilab hicrep R package to evaluate reproducibility of Hi-C data qunhualilab idr3c R package for "A semi-parametric statistical model for integrating gene expression profiles across different platforms" quommit settle An R package that builds Neo4j databases from documents with spatial semantics qureshlatif QSLpersonal Personal package with functions commonly used by Quresh Latif qureshlatif WoodpeckerHSI Functions and data for developing, applying, and evaluating habitat models for disturbance-assocaited woodpeckers developed by scientists at Rocky Mountain Research Station, U.S. Forest Service. qutang confusion2network R package converting confusion matrix to network graph qutang mHealthR R package to support data io, manipulation and visualization for mhealth specification qutang mhealth-data-processing-r R package to create, manipulate and visualize sensor data and annotations stored in mhealth format qutang mhealth-visualizer-r R package to create, manipulate and visualize sensor data and annotations stored in mhealth format qutang mhealthformat-support-r R package to create, manipulate and visualize sensor data and annotations stored in mhealth format qutke qutke R library for Qutke qutke ruibe 用于对外经济贸易大学金融培训的R包 qxde01 RHanLP R/HanLP Interface qxde01 Rdouban 获取豆瓣网评论数据的R接口 qxde01 Rtagscloud Plot a word cloud with javascript and swf. r-barnes mandeR Package for calculating compactness measures and quantifying gerrymandering. r-bierman ribozeroMine r-dbi DBI A database interface (DBI) definition for communication between R and RDBMSs r-dbi DBItest Testing DBI drivers r-dbi RKazam A boilerplate for DBI drivers, fully DBI-compliant r-dbi RSQLite R interface for SQLite r-fndv mvPot R package mvPot: Tools for high-dimensional peaks-over-threshold inference and simulation of spatial processes. r-glennie openpopscr Fits open population spatial capture-recapture by maximum likelihood r-gris babelfish leftovers from spbabel r-gris cgalgris r-gris dplyrodbc Examples of applying dplyr to ODBC sources r-gris ggrasp This was another stepping stone to rangl. r-gris gladr Options for rgdal r-gris manifoldr R resources for Manifold users r-gris nc r-gris ncdump r-gris nf This was a stepping stone to rangl r-gris otg read only the geometry, using rgdal r-gris polyggon The hole story. r-gris rangl basic facilities for spatial data as primitives-based mesh structures r-gris rastermesh Curvilinear extensions to raster WIP r-gris reproj Reproject with proj4, in progress r-gris rlas LiDAR LAS in R r-gris sfct constrained triangles for simple features r-gris sfdct Constrained Delaunay triangulation for simple features r-gris sp.df A Spatial dead-end r-gris tabularaster Tidy approaches with raster. r-gris tidyff hypertidy's ff r-gris tidync systematic approaches to NetCDF data extraction, manipulation and visualization r-gris toposhop r-gris torpor R package for topology workshop r-gris trimesh basic facilities for triangulated spatial mesh structures r-gris vegie Stupid massive shapefiles r-hub builddeps Find the build-time dependencies of a package r-hub citest Test R package and repo for the r-hub CI r-hub crancache Transparent caching of CRAN package files - WORK IN PROGRESS! r-hub crandeps R package to query CRAN (reverse) dependencies and calculate the full DAG r-hub cranlike Manage files in a CRAN-like repositoy r-hub localbuilder Build binary Linux packages in R-hub Docker containers - Work in progress! r-hub rhub R-hub API client r-hub rhubctrl ⚠️ Work in progress! An R package that contains configuration information and functions to deploy and instance of r-hub. If you want to try r-hub on your local machine or server(s), you need this repository. r-hub sysreqs R package to install system requirements r-lib R6 R objects with reference semantics r-lib ansistrings Manipulation of ANSI colored strings r-lib async Asynchronous HTTP requests in R -- UNDER CONSTRUCTION r-lib boxes Draw rules and boxes in the terminal, WORK IN PROGRESS! r-lib callr Call R from R r-lib cli Tools for making beautiful & useful command line interfaces r-lib clisymbols Unicode symbols for CLI applications, with fallbacks r-lib conf Persistent Package Configuration r-lib covr Test coverage reports for R r-lib crancache Transparent caching of CRAN package files - WORK IN PROGRESS! r-lib crayon R package for colored terminal output r-lib debugme Easy and efficient debugging for R packages r-lib depends R Package Dependency Resolution -- EXPERIMENTAL, WORK IN PROGRESS! r-lib desc Manipulate DESCRIPTION files r-lib evaluate A version of eval for R that returns more information about what happened r-lib filelock Cross platform file locking in R r-lib gargle All the Google auth things r-lib gh Minimalistic GitHub API client in R r-lib httr httr: a friendly http package for R r-lib httrmock Mock HTTP requests, WORK IN PROGRESS, DO NOT USE IT! r-lib keyring :closed_lock_with_key: Access the system credential store from R r-lib liteq Serverless R message queue using SQLite r-lib memoise Easy memoisation for R r-lib oldie Gracefully retire your functions or arguments that are no longer needed (experimental) r-lib pillar Format columns with colour r-lib pingr R package to ping, over TCP as well r-lib pkgapi Create a map of functions for an R package - WORK IN PROGRESS! r-lib pkgbuild Find tools needed to build R packages r-lib pkgconfig Private configuration for R packages r-lib pkgdepends R Package Dependency Resolution -- EXPERIMENTAL, WORK IN PROGRESS! r-lib pkgdown Generate static html documentation for an R package r-lib pkginstall Provides a replacement for `utils::install.packages()` r-lib pkgload Simulate installing and loading a package r-lib pkgman The goal of pkgman is to install packages and manage libraries and repositories. r-lib prettycode Syntax highlight R code in the terminal r-lib progress Progress bar in your R terminal r-lib rappdirs A port of AppDirs for R r-lib rcmdcheck Run R CMD check from R and collect the results r-lib remotes Install R packages from GitHub, Bitbucket, git, svn repositories, URLs r-lib revdepcheck R package reverse dependency checking r-lib rlang Low-level API for programming with R r-lib roxygen2md Convert elements of roxygen documentation to markdown r-lib sessioninfo Print Session Information r-lib styler Non-invasive pretty printing of R code r-lib tar Fixed up tar and untar implementation r-lib testthat An R 📦 to make testing 😀 r-lib usethis Set up commonly used 📦 components r-lib whoami Username, full name, email address and GitHub username of the current user r-lib withr Methods For Temporarily Modifying Global State r-music deepbach Replicate DeepBach (https://github.com/Ghadjeres/DeepBach) using R r-net-tools RIR Regional Internet Registry r-net-tools inet.intel Threat Intelligence sources r-net-tools net-basic Network basic functions r-net-tools net-security Network functions for sysadmins and security needs r-net-tools net.basic Simple R package with network related functions for learning purposes. r-net-tools net.security Security R package with a set of utils to analyse the different industry standards (MITRE and NIST). r-pkgs boxes Draw rules and boxes in the terminal, WORK IN PROGRESS! r-pkgs callr Call R from R r-pkgs crayon R package for colored terminal output r-pkgs desc Manipulate DESCRIPTION files r-pkgs functionmap2 Create a map of functions for an R package - WORK IN PROGRESS! r-pkgs gargle All the Google auth things r-pkgs gh Minimalistic GitHub API client in R r-pkgs pkgapi Create a map of functions for an R package - WORK IN PROGRESS! r-pkgs pkgbuild Find tools needed to build R packages r-pkgs pkgload Simulate installing and loading a package r-pkgs processx Execute and Control System Processes from R r-pkgs rcmdcheck Run R CMD check from R and collect the results r-pkgs remotes Install R packages from GitHub, Bitbucket, git, svn repositories, URLs r-pkgs roxygen2md Convert elements of roxygen documentation to markdown r-pkgs sessioninfo Print Session Information r-pkgs usethis Automatically Set Up Commonly Used Package and Analysis Components r-prof profile Read, Manipulate, and Write Profiler Data r-prof r-pprof R package that wraps Google's pprof r-quantities constants Reference on Constants, Units and Uncertainty r-quantities errors Error Propagation for R Vectors r-quantities units Measurement units for R r-simmer simmer Discrete-Event Simulation for R r-simmer simmer.bricks Helper Methods for 'simmer' Trajectories r-simmer simmer.json Read / Load 'simmer' Definitions in JSON Format r-simmer simmer.optim Parameter Optimization Functions for simmer r-simmer simmer.plot Plotting Methods for 'simmer' r-spatial classInt Choose Univariate Class Intervals r-spatial lwgeom bindings to the liblwgeom library r-spatial mapedit Interactive editing of spatial data in R r-spatial mapview Interactive viewing of spatial data in R r-spatial sf Simple Features for R r-spatial spdep r-spatial stars Spatiotemporal tidy arrays for R r08in GroupCD r08in RobustCD Robust variable selection r08in rkan r1729 packagelist r2evans violinplot Violin plots R using base graphics r4atlantis atlantisom Atlantis operating model. Generates data sets from Atlantis scenarios. r4atlantis ratlantis R code for interfacing with Atlantis ecosystem modeling software r4ss r4ss files for r4ss package r8m rusquant rusquant package fork rBatt facebook5 Facebook 5 Kaggle Competition (Recruitment) rBatt fishyWarnings Adjusting management in response to incoming statistical indicators of resilience rBatt rbLib Convenient R Functions rBatt robustRisk What network features make ecological communities robust to risk? rBatt spatialDiversity Spatial patterns in biodiversity change rBatt topoFish Topology of fish geographic distributions rBatt trawlData Collate and clean bottom trawl survey data rBatt trawlDiversity Long-term trends in regional species richness rCarto flows 🔄 Flow Selection and Analysis - Sélection et analyse de flux rCarto linemap Create maps made of lines rCarto osrm :twisted_rightwards_arrows: Shortest Paths and Travel Time from OpenStreetMap with R rCarto photon :dart: R Interface to the Photon API / Interface entre R et l'API de photon rCarto rCarto Sources of rCarto package v0.9 / Sources du package rCarto v0.9 rCarto wafflemap rOpenGov RPublica ProPublica API Client rOpenGov bibliographica Tools for bibliographic data analysis rOpenGov datavaalit Parliamentary monitoring R tools: Finland rOpenGov dkstat API connection to the StatBank from Statistics Denmark rOpenGov edu edu: An open framework for creating and assessing exercises for R courses https://ropengov.github.io/edu/ rOpenGov edudata rOpenGov enigma R client for the Enigma.io API rOpenGov estc British Library ESTC data collection analysis tools rOpenGov europarl Tools for European Parliament Data rOpenGov eurostat R tools for Eurostat data rOpenGov federalregister R client library for the U.S. Federal Register API rOpenGov fennica R tools for Fennica (Finnish national bibliography) rOpenGov finpar R client for the unofficial API of the Parliament of Finland (provided by Kansan Muisti) rOpenGov fmi Finnish Meteorological Institute open data API R client rOpenGov gisfin Finland GIS package for R rOpenGov helsinki R Tools for open data on Helsinki capital region in Finland rOpenGov iotables iotables R package rOpenGov mpg Extract U.S. vehicle fuel economy data from FuelEconomy.gov rOpenGov pollstR R client for the Pollster API rOpenGov psData An R package to download regularly maintained political science data sets and make commonly used, but infrequently updated variables based on this data. rOpenGov pxweb R tools to access PX-WEB API rOpenGov recalls This package is deprecated. rOpenGov rqog Download data from the Quality of Government Institute data rOpenGov rsunlight Interface to SunlightLabs APIs rOpenGov rtimes R wrapper for NYTimes API for government data rOpenGov rustfare Algorithms for Russian data rOpenGov rwfs WFS client for R rOpenGov sotkanet R Tools for the Sotkanet demographics indicator database (covering Finland and Europe) rOpenGov statfi Statistics Finland Open Data R Tools rOpenGov sweSCB A R package for accessing the web API of Statistics Sweden (a.k.a. SCB) rOpenGov sweidnumbr R package for Structural handling of identity numbers used in the swedish administration such as personal identity numbers (personnummer) and organizational identity numbers (organisationsnummer). rOpenGov template rOpenGov minimal package template rOpenGov usbroadband Data for the U.S. National Broadband Map http://www.broadbandmap.gov/ rOpenHealth openfda Convenient access to the OpenFDA API rOpenHealth rClinicalCodes R tools for integrating with the www.clinicalcodes.org repository rOpenHealth rEHR R tools for processing and extracting clinical information from Electronic Medical Records Databases rOpenHealth rHealthDataGov This package provides an R interface to the HealthData.gov Data API. rOpenHealth rUN_development_reports R integration with the UN development programme API rOpenHealth rpcdsearch Identifies relevant clinical codes and automates the construction of clinical code lists for primary care database studies rOpenHealth rpubmed Tools for extracting and processing Pubmed and Pubmed Central records. rOpenStats Rshockwave Analytics package for twitter shockwave analytics including different thematic units criteria ra125 concomp 523 Final Project raarangoq ProyectoSeriesDeTiempo los quiero mucho :D rabravo ws2pgdb Bundle of function to retrieve, parse, extract, and store data from the NOAA into a local/remote Postgres database. rabutler CRSSIO R Package to manage code for maniuplating the I/O for CRSS. rabutler RWDataPlot Old R Package for manipulating RiverWare data racconblack Actuaria Evaluación de Prima seguros rachelss rrelrates rachelss workshop rachelwarnock fbdR R package for estimating speciation and extinction rates from phylogenies and stratigraphic ranges rachelwarnock fossilsim R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling radamsRHA GppFst GppFst: Genomic Posterior Predictive Simulations of Fst and Dxy radamsRHA MultiSpeciesSelectSim radamsRHA ThetaMater Bayesian estimation of the population size parameter theta from genomic data radamsradams MultiSpeciesSelectSim No description or website provided. radiant-rstats radiant Business analytics using R and Shiny. The radiant app combines the menus from radiant.data, radiant.design, radiant.basics, radiant.model, and radiant.multivariate. radiant-rstats radiant.basic Business analytics using R and Shiny radiant-rstats radiant.basics Code for the Basics menu in Radiant radiant-rstats radiant.biostat radiant-rstats radiant.data Code for the Data menu in Radiant radiant-rstats radiant.design Code for the Design menu in Radiant radiant-rstats radiant.example http://vnijs.github.io/radiant/ radiant-rstats radiant.model Code for the Model menu in Radiant radiant-rstats radiant.multivariate Code for the Multivariate menu in Radiant radiant-rstats radiant.quant Business analytics using R and Shiny radiant-rstats radiant.text Code for the Text menu in Radiant raerose01 deconstructSigs deconstructSigs raerose01 software.carpentry.feb25 rafaelcb DatosBCCR Paquete para conectarse al API del BCCR y bajar datos rafaelcb FARS Repository with FARS functions for the Mastering Software Developmet in R specialization rafaelcb NOAA Explore NOAA earthquake data rafaeloliveiralima RJabot Pacote R para acesso a base de dados Jabot - JBRJ rafaeloliveiralima tempus rafal-gl package_coursera rafalab bumphunter bumphunter rafalab dslabs Data Science Labs R package: includes functions and data for data science courses rafalab rafalib rafalszota RCooladata R package for connecting Cooladata using HTTP API rafalszota cats rafalszota rafalszota rafalszota resume rafalszota username.github.io rafamonge RealEstate Real Estate analysis raff-k Lslide Lslide package provides functions for the automated dection of landslides using high-resolution LiDAR DTM data, open-source software, and an object-oriented approach. Moreover, it consists of basic functions of Evan's Geomorphometry & Gradient Metrics Toolbox raffscallion RSF3 R Package for processing fire activity data. raggaraluz master_sw_dev_c3 raguirreg DeconCell rahmarid stablespec Stable Specification Search in Structural Equation Models raim platexpress Inspection and Analysis of Microbial Growth and Gene Expression Data raim segmenTier segmentation of clustering sequences; applicable to RNAseq time-series raim segmenTools rainer-rq-koelle ansperf A R-package for supporting the harmonised application of algorithms for analysisng operaitonal air navigation service performance. rainiercito Mastering_Software_Development_in_R Capstone Final Project rainiercito farsfunctions Dummy package for the Building R packages Coursera's Course raivokolde GOsummaries raivokolde RobustRankAggreg R implementation of Robust Rank Aggregation algortihm raivokolde bvenn A simple alternative to proportional Venn diagrams raivokolde gProfileR raivokolde pheatmap Pretty heatmaps raivokolde seqlm Sequential lm for methylation data rajeshstat sunvis rajewsky-lab distmap DistMap rajewsky-lab dropbead rajewsky-lab dropseq No description or website provided. rajkar86 kr Private R package with convenience functions for personal use rajkar86 shinypipe R Package for shiny modules to be used as reusable components in building data processing pipelines rakelup GDMR Fuzzy Group decision making methods on R raldulai Episim R package for simulation of epidemiological data ram6ler poptemp An R library for producing files from a template and a data frame. ram6ler ram6ler.github.io ram6ler transparent ramamet ambulanceR Ambulance incidents in Borough London city - (monthly dataset) :rotating_light: :ambulance: ramarty PRSgithub ramarty geoSIMEX geoSIMEX R Package ramellose CoNetinR Implementation of CoNet in R ramey gitdemo ramey sparsediscrim Sparse and Regularized Discriminant Analysis in R ramhiser activelearning Active Learning in R ramhiser clusteval Clustering Evaluation in R ramhiser datamicroarray A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models. ramhiser itertools2 Functions creating iterators for efficient looping in R ramhiser jointdiag Simultaneous Diagonalization Algorithms of Positive Definite Symmetric Matrices ramhiser noncensus U.S. Census Region and Demographic Data ramhiser pocketknife A collection of useful utility functions in R ramhiser retry R Package to Retry Any Function ramhiser sortinghat Classification Benchmarking Framework in R ramhiser sparsediscrim Sparse and Regularized Discriminant Analysis in R ramirez-a seahorseFBA R package for metabolic modeling of seahorse XF data integration ramnathv RDataPkg ramnathv RGoogleForms Generate Google Forms from RMarkdown ramnathv agebyname R Package to Explore Age vs. Name Relationships ramnathv dashifyr A dashboarding framework for R using Shiny ramnathv htmlwidgets HTML Widgets for R ramnathv intellidate Intelligent parsing of date-time strings ramnathv justGage justGage HTML Widget for R ramnathv poirot Reproducible Blogging with R Markdown ramnathv rCharts Interactive JS Charts from R ramnathv rChartsCalendar rCharts binding for CalMap ramnathv rChartsCalmap An htmlwidgets binding for calendar heat maps using d3 ramnathv rChartsRogoff ramnathv rMaps Interactive Maps from R ramnathv rNVD3 Interactive Charts from R using NVD3.js ramnathv rNotebook A browser based R Notebook ramnathv rblocks A fun and visual way to learn data structures and control flow in R. ramnathv rbokeh R Bindings to Bokeh ramnathv rcstatebin Interactive Statebin Charts ramnathv slickCarousel jQuery Slick Carousel HTML Widget for R ramnathv slidify Generate reproducible html5 slides from R markdown ramnathv slidify-old Generate reproducible html5 slides from R markdown. This repository has moved to `ramnathv/slidify` ramnathv slidifyDocs ramnathv slidifyLibraries This R package contains all external libraries required by slidify ramnathv sochi Sochi Olympics Medal Tally using OpenCPU and rCharts ramnathv tempblog ramnathv testPkg1 Testing a package ramnathv testTravis ramnathv testapp1 ramnathv travisexpts Experiments with Travis ramonlaborda lab5 ramseylab regshape DNA shape-based classifier for regulatory elements (R package) ran-ran hydrometeo Handle hydrological and meteorological data from different sources. ran-ran zoocat zoocat is a class based on the zoo class, which means zoo with column(C) attributes(AT). randall-romero CompEconR Porting Miranda&Fackler's CompEcon toolbox from Matlab to R randall-romero bccr Reads Data From Central Bank of Costa Rica randalleclayton Coppock Coppock indicator in R randalleclayton mytools Miscellaneous R functions to support personal scripts and tools randel MixRF A random-forest-based approach for imputing clustered incomplete data randel mvMISE A General Framework for Multivariate Mixed-Effects Selection Models with Potential Missing Data randel mvmise A General Framework for Multivariate Mixed-Effects Selection Models with Potential Missing Data randel ofGEM A test for omnibus-filtering-based gene-environment interactions meta-analysis randomchars42 bioset Convert a matrix of raw values into nice and tidy data randomchars42 eenv A package to load packages, functions and variables I frequently use. randommonkey ciudatos randommonkey geomagic randommonkey gggeomagic randommonkey hgchmagic randommonkey hgmapsmagic randommonkey lfltmagic randy3k iterpc R Package: Efficient Iterators for Permutations and Combinations randy3k xptr Manipulating External Pointer randyzwitch AdobeDW R Client for Accessing the Adobe Analytics Data Warehouse API randyzwitch RSiteCatalyst R package to access Adobe Analytics Reporting API ranghetti fidolasen FInd, DOwnload and preprocess LAndsat and SENtinel images raoul-f leaguetables Creating league tables in R raphael210 QDataGet raphael210 QFactorGet raphael210 QUtility raphael210 RFactorModel raphg iBMQ integrated Bayesian Modeling of eQTL data raphifix RSoundcloud raponxi FARSinR2 Coursera Building R packages repository. rappster arrayr Manage array structures rappster bumpr Version bumping and more rappster bumpr.test rappster classr Interfaces and functionality for creating class instances rappster conditionr Custom R Conditions rappster crudr rappster dataconr rappster descriptionr Processing of package DESCRIPTION files rappster devops rappster examplr Systematic package project examples management rappster filesystr Utilities for handling file system ressources rappster instancer rappster jirar rappster libr Functionality for handling package libraries rappster listr Extended list functionality rappster nestr Easy environment and list nesting rappster optionr Management of customized (and nested) project/package options rappster pptr rappster r6.s4 rappster r6issue rappster r6x rappster rapp rappster reactr Reactive object bindings with built-in caching rappster references-r6 rappster references-setoldclass rappster reposr Enhanced package repository management rappster roxygen.problem rappster roxygen2.problem rappster selectr rappster shinymods rappster shinyref rappster testhelper rappster timetrackr rappster typr Implicitly typed object rappster umlr rappster wcfbook rappster yamlr Useful functionality to identify, parse and process YAML markup in a flexible and extendable manner. raquamaps aquamapsdata R package for accessing curated data from AquaMaps.org raredd Gmisc0 Frozen < v1.0 of https://github.com/gforge/Gmisc raredd cmprsk2 raredd iplotr interactive plots raredd plotr More plotting functions and examples. raredd ragree rater agreement functions and plots raredd rawr rawr package raredd trainr Better practices for statistical computing in r ras44 condusco query-driven query generation rasenior ConvertDateTime Convert between different date/time formats. rasenior MoistureCalc Calculate various parameters related to air moisture content. rasenior PatchStatsFLIR Tools to analyse FLIR thermal images in R rasenior SolarCalc Estimates time of sunrise and sunset based on location and date. rasmusab bayesboot An R package implementing Rubin's (1981) Bayesian bootstrap. rasmusab bayesian_first_aid Inside every classical test there is a Bayesian model trying to get out. rasmusab beepr The package that sounds as it is called. rasmusab fullcalendar A quick hack to use FullCalendar to produce calendar htmlwidgets from R rasmusrhl entrotre rasmusrhl epitable rastala AzureMLRModuleBuilder rasyidstat indonesia R library contains things related to my beloved country, Indonesia rasyidstat mrSQ Rasyid Ridha's personal R package rasyidstat mrsq Rasyid Ridha's personal R package rasyidstat nusantr R package contains things related to my beloved country, Indonesia :indonesia: ratmaster collateral Reproducible, comfortable and fast processing with R ratmaster plaint PlainT: Plain Table Markup Language raubreywhite RAWmisc R Convenience functions raubreywhite SMAOgraphs Graphical standards for SMAO raubreywhite dashboards_msis raubreywhite dashboards_normomo raubreywhite dashboards_reporttb raubreywhite dashboards_sykdomspuls raubreywhite fhi raulopez Monotonic raulopez monotonicTree raulossada gitbook4R Repository for test R package gitbook4R rauschenberger globalSeq Global test for counts rauschenberger palasso Pairwise-adaptive lasso rauschenberger semisup Semi-supervised mixture model ravenroadresources Flamingo Fluid Properties Uncertainty Analysis ravenroadresources petroreadr Read File Formats Used in the Oil Industry ravenroadresources rmontecarlo Run Monte Carlo Simulations ravi9884 PersonalFinance Dashboard for my personal finances ravigovind ibrokers Automatically exported from code.google.com/p/ibrokers ravingmantis CorporaCoCo A set of functions used to compare co-occurrence between two corpora. ravingmantis CorporaCorpus A collection of small corpora prepared by the Centre for Corpus Research. ravingmantis unittest Unit testing for R ravinpoudel myFunctions myFunctions package include functions that i use regularly. This is an attempt that would eventually lead to an effective and useful R package.--- in near future. raviselker jmvarcade Games for jamovi raviselker jmvgames Games for jamovi raviselker medmod Mediation and moderation module for jamovi and R raviselker ppv Demonstrates the positive predictive value in jamovi raviselker scatr Create Scatter Plots with Marginal Density or Box Plots in jamovi and R ray-pacheco JOC ray9809 macrosoft lame R library for reading microsoft csv ray9809 motor2 ray9809 rectools lame R library for reconciling datasets raybaser FACTscorer Scores the FACT and FACIT Family of Patient-Reported Outcome Measures raybaser PROscorer Score Common Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments raybaser PROscorerTools Tools to Score Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments rayheberer imgnoise R package for noise generation in images rayheberer spotifyR provides an interface to the Spotify web API raymondben datavolley R package for reading datavolley scouting files raytonghk urPac This is the collection of r package and tool with my own modifications. razZ0r repscores Calculate various reproducibility scores. rb28 nhsrefcost R data repository for 2015-16 national nhs reference costs returns rbarango LST8 R script TOA and BRIGHTNESS TEMPERATURE converter for Landsat 8 rbas2015 CausalFX CausalFX R Package rbcarvin demoPackage rbchan maxlike R package to model species distribution using presence-only data rbchan unmarked R package for hierarchical models in ecological research rbensua afmToolkit An R package for AFM Force-distance curves analysis. rbentham MCbiclust rbertolusso intubate <||> Interfaces to Popular R Functions for Data Science Pipelines, and More rbhwilliams JCI-Insights-paper-data-and-analysis rbhwilliams newblerCG R code for working with the Newbler 454ContigGraph file rbhwilliams orf.lcam Processing taxonomic and functional data from ORF-level analysis of metagenome assemblies using lcamapper.sh rbirdpersons savage R SVG tools rbouyoux Homework_Package_Regis rc-34 opencpu-testor Simple R package to deploy in and then test opencpu rcannood GENIE3 rcannood GNG An R implementation of the Growing Neural Gas algorithm rcannood PRISM rcannood SCORPIUS Trajectory inference for single-cell RNA-seq rcannood StemID Unofficial StemID repository rcannood Waterfall Unofficial Waterfall repository rcannood incgraph rcannood scrapebiblio An R package for scraping biblio.ugent.be rcapell HYPEtools An R package for working with HYPE hydrological model files rcapell RHYPE An R package for working with HYPE hydrological model files rcastaneda2 Simulate-Mixed-and-binary-items rcastaneda2 sfunction3 rcastelo GSVA Gene set variation analysis for microarray and RNA-seq data rcastelo GenomicScores Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome rcastelo VariantFiltering Filter genetic variants using different criteria such as inheritance model, conservation, etc. rcastelo qpgraph Estimate gene and eQTL networks from high-throughput expression and genotyping assays rcavalcante annotatr Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr. rcavalcante annotatr.data Data package with annotations for annotatr rcc-uchicago influenceR Software tools to quantify structural importance of nodes in a network rcfree rclinconcept R clinical concept querying rcheshire FishGraph A set of visualization tools for stock assessment output rchlumsk RavenR R package for handling Raven hydrologic modelling framework inputs, outputs, and diagnostics rcorty CortyKit rcorty actogrammr read activity data and plot actograms rcorty vISAM rcorty vqtl The 'vqtl' package conducts genome scans that accomodate and target genetic and non-genetic effects on trait variance on cross objects from the popular 'qtl' package. rcourses codataVis CODATA-RDA School of Research Data Science (Visualisation) rcourses efficientRSS Efficient R course material rcourses nclRadvanced rcourses nclRbig rcourses nclRefficient rcourses nclRexercises rcourses nclRggplot2 NCL R courses rcourses nclRintroduction rcourses nclRmodelling rcourses nclRpackage rcourses nclRpredictive rcourses nclRprogramming rcourses nclRreproducible rcourses nclRshiny rcourses r4bd rcqls CGEMEV Alternative method for estimating two parameter Matern Covariance Field rcqls CqlsPersistentRcppObject Persistency for Rcpp objects rcqls CqlsRCom Communication between R and C rcqls CqlsRObj Ruby-like OOP mechanism rcqls EBSpat Nearest-neigbours type Gibbs Point Processes R Package rcqls EBSpatCGAL EBSpat CGAL version rcqls Mathematica4R Mathematica for R rcqls VAM Virtual Age Model rcqls accDegTest Accelerated degradation test rcqls flan Adrien et Bernard FLAN project rcqls flanRcpp flan Rcpp rcqls jl4R Julia for R rcqls mrb4R mruby for R rcqls r4ex rcqls rb4R Ruby for R rcqls wedge Wedge probability computation. rcqls wedgeParallel wedge companion package using RcppParallel rcvalenzuela fars Building R Packages Assignment rcylwa SuperFarmerRCNK rdatsci rt R tools for the shell rdeborja NGS-Tools-Lumpy rdeborja NGS.Tools.BICseq A custom R package that wraps the BICseq copy number calling algorithm. rdeborja ShlienLab.Core.SSM A R package for filtering simple somatic mutations (SSM) from MuTect2 data rdeborja plotting.general Publication ready plotting functions using ggplot2 rdeborja statistics.general A package containing general statistics functions rdevito MSFA MSFA rdiaz02 PHYLOGR rdiaz02 RJaCGH rdiaz02 testp testp rdiaz02 varSelRF rdisalv2 databuddha Crutches for a middling R programmer rdisalv2 disalvo misc r functions rdisalv2 dismisc miscellaneous R functions rdisalv2 oss-policies rdisalv2 thedatabuddha.dataget Intended for social scientists studying US education. Contains R functions for getting data into R. rdpeng DSM Deterministic Statistical Machine rdpeng cacher Tools for caching and distributing statistical analyses rdpeng cachesweave Tools for caching Sweave computations and storing them in key-value databases rdpeng filehash The 'filehash' package for R rdpeng filehashsqlite Simple key-value database for R using SQLite rdpeng gpclib General Polygon Clipping Library for R rdpeng mvtsplot Functions for plotting multivariate time series data rdpeng newpackage rdpeng rwmparallel Parallel Processing in R using a Replicated Worker Model rdpeng simpleboot Simple Bootstrap Routines rdpeng stashr A set of tools for administering shared repositories rdpeng tlnise Two-level normal independent sampling estimation rdpeng tsmodel Time Series Modeling for Air Pollution and Health rdrr1990 bigKRLS bigKRLS combines bigmemory & RcppArmadillo (C++) for speed into a new Kernel Regularized Least Squares algorithm. Recent slides available at: rdrr1990 kerasformula A high-level interface to keras for R that takes advantage of formulas rds64 MortgageQuant rdshankar RImmPort RImmPort: Enabling ready-for-analysis immunology research data rdwyer2 powers reactorlabs genthat reactorlabs testgenthat Simple package used to describe functionality of genthat package. realAkhmed mixpanelR R interface for MixPanel data export API realerikrani nvdr An R package for building forecasting models using data from National Vulnerability Database (NVD) rebeccahch precision an R package allowing users to conduct a simulation study for molecular classification with a unique pair of Agilent microRNA array datasets rebeccahch precisiondata an R data package to compliment the PRECISION package (http://github.com/rebeccahch/precision). rebeccalpowell grassmapr rebelrebel04 kpHelpr R helper functions rebelrebel04 xplor xplor rebinhosini AdvancedR rebinhosini ML-Introduction rebordao modellatoR Automates some parts of an analytics process, particularly the deployment of a model, its testing and reporting. rebordao myrutils A set of utilities that facilitate some of my workflows. recon-icm linkprediction R package for proximity-based methods of link prediction. reconhub branchr R Estimation from Cluster Sizes reconhub contactsim Simulate Disease Outbreaks with Contacts reconhub deployer Self-contained R environment on a thumb drive reconhub distcrete :chart_with_upwards_trend::point_right::bar_chart: Discretise distributions reconhub earlyR Estimation of infectiousness in the early stage of an outbreak, with short-term predictions. reconhub epicontacts Handling, Visualisation and Analysis of Epidemiological Contacts reconhub epicontacts.ui Shiny UI components for epicontacts reconhub epicookbook A cookbook of epidemiological models in R reconhub epiflows reconhub epimaps reconhub epitrix Small Helpers and Tricks for Epidemics Analysis reconhub incidence ☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence reconhub incidence.ui Graphical User Interface for the incidence package reconhub nomad :package::point_right::school_satchel: Pack up R to take away reconhub outbreaker2 Disease outbreak reconstruction from epidemiological and genetic data reconhub outbreaks outbreaks: an R package compiling disease outbreak data reconhub projections Projections of future incidence reconhub reconhub All stable packages from RECON reconhub recontools Tools to develop RECON packages reconhub tracer Tools for informing contact tracing reconhub vimes Visualisation and monitoring of epidemics red-list-ecosystem redlistr redlistr: Tools for the IUCN Red List of Ecosystems and Species redadmiral pooltalk No description or website provided. redichh ShapleyR Package for a nice and smoothe usage of the shapley value for mlr redichh checkHeight test project for students redmode FinancialInstrument redmode RCandles R bindings to HighCharts for producing beautiful candlesticks charts redmode RInCHlib Simple port of InCHlib to R redmode blotter redmode indicoio A simple R Wrapper for the indico set of APIs redmode quantstrat redmode realtr redmode rmymemory rmymemory package repository redmode word2vecr R wrapper for 'word2vec' reedssorenson RNAdecay R package for modeling of and comparing treatment effects on RNA decay rates, using 1st order and 2nd order decay models. refik putdatio refik refik Personal Dashboard refunders refund Regression with functional data refunders refund.shiny Interactive graphics for functional data analyses refunders refund.wave Wavelet-based regression for scalar responses and functional predictors. regbook regbook An R package that contains datasets and functions for regression analysis. regense pixel-en-selle regisely macrodata an R package to quickly build a cross country panel data reichlab 2017-2018-cdc-flu-contest Code and submissions for 2017-2018 CDC flu prediction contest reichlab ALERT Implementation of the ALERT algorithm for detecting the onset of influenza season. reichlab TSIRsim R package for simulating TSIR models. reichlab activemonitr Modeling of costs and risks of active monitoring during pandemics. reichlab adaptively-weighted-ensemble Code and manuscript for adaptively weighted ensembles via stacking reichlab annual-predictions-paper reichlab dengue-ssr-prediction reichlab dengueThailand reichlab densitystackr R package implement model stacking for models that output predictive distributions. reichlab forecastTools An R package with tools for managing, evaluating forecasts of time-series reichlab kcde Kernel conditional density estimation with flexible kernel specifications. reichlab mvtnorm-mod-kcde A version of R's mvtnorm package with minor modifications yielding approximately 30% speedups in KCDE estimation with pdtmvn-based kernel functions and discrete variables. reichlab pdtmvn R package implementing partially discretized truncated multivariate normal distributions reichlab sarima-utils sarimautils R package: SARIMA Model Utility Functions reichlab sarimaTD sarimaTD R package: SARIMA Models with Transformations and Seasonal Differencing reichlab spatialpred R package for spatial prediction models reichlab ssr-influenza-competition Self-contained version of SSR package for influenza competition reichlab xgbstack R package using gradient boosting to implement model stacking for models that output predictive distributions. reidt03 RadOnc reimandlab ActiveDriver reimandlab mExplorer reinholdsson ColdbirHelpServer Coldbir Help Server reinholdsson FileServer R File Server reinholdsson dt.aggr r data.table helper functions reinholdsson exa Access Exasol DB through JDBC reinholdsson jekyllr reinholdsson rbooli R Booli API Wrapper reinholdsson rdigits An R wrapper for the NVIDIA DIGITS API reinholdsson rjobs R Shiny App to Manage Database Queries reinholdsson rkolada Simple R package to access the Kolada API reinholdsson swemaps Swedish map data for ggplot and leaflet in R reinholdsson wdiAPI Get data from the World Bank API relund gMOIP 2D plots of linear/integer programming models in R remi-daigle BESTMPA remi-daigle flickRgeotag Queries flickr for geotagged data. Works as an R wrapper for the flickerapi Python module. Requires a Python installation. remsamp Rmerp_public This is the public version of Rmerp rendrikson gwDist renkun-ken coder Code tools for R renkun-ken container C++ Containers for R renkun-ken factory A toolbox for creating random data sets in a wide range of forms renkun-ken formattable Formattable Data Structures renkun-ken pipeR Multi-Paradigm Pipeline Implementation renkun-ken refer Functions with Reference Semantics renkun-ken reflite A Lightweight Reference Object Implementation renkun-ken remoteR Connect to Remote R Sessions renkun-ken rlist A Toolbox for Non-Tabular Data Manipulation renkun-ken rprintf Adaptive builder for formatted strings renkun-ken rtype A strong type system for R renkun-ken secret Make Secret Functions in Package renkun-ken sharedata Interprocess data sharing between R sessions renkun-ken sknn Similarity-based k-nearest neighbors algorithms for classification, regression, and clustering renkun-ken trademetrics A Collection of Trading Performance Measures renlund attacher Automatically use the LaTeX "attachfile" package for tables and graphs renlund dataman Data management renlund descripteur Basic data description renlund enumeratermd Enumerate (Tables and Figures in) rmd (RMarkdown files) renlund formids Functions for mids-objects renlund intpoc Statistics for interpolated points renlund miscmatch Misc. functions related to matching renlund proh Project tools renlund table1 Create tidy, descriptive data renlund ucR Misc. code rennertl Truncation Package to estimate the survival distribution function and Cox regression model under double truncation renozao CLIR Command Line Interface for R packages renozao FAQR renozao NMF NMF: A Flexible R package for Nonnegative Matrix Factorization renozao RcppOctave Seamless Interface to Octave -- and Matlab code renozao applyBy Subset-wise apply functions to aggregate rows or columns of matrix-like objects renozao dbutils Database Utility Functions renozao doRNG R package - Generic Reproducible Parallel Backend for foreach renozao nplyr Named plyr Functions renozao pkgmaker R Package development utilities renozao renozao.github.com renozao repotools Tools for R Package Repositories renozao rngtools R package - Utility functions for working with Random Number Generators renozao roclets Extensions for roxygen2 renozao xbioc Extra Base Functions for Bioconductor rentzb glossR An R package for creating interlinear glosses in knitr from ELAN transcriptions rentzb sample renukasane penCalc A package to simulate the expected monthly pension at retirement. reny1 alexdata alexdata reos156 AnalisisSeriesTiempo Análisis Series de Tiempo reptalex BBS_Analysis reptalex WrightFisher R package for simulation and CVT-testing of Wright-Fisher Process reptalex phylofactor republicwireless-open foregen (fo)recast (re)gressor (gen)erator reslp correlate R package for character correlation analyses with phylogenetic trees ressy microsat Analyze microsatellites in high-throughput sequencing datasets resteorts blink resteorts git-bitbucket.org-resteorts-blink resteorts italy restonslacker taber restrellado spedtools This package contains functions, data, and lookup vectors to help users who work with California special education data. retaj cb2tools retaj qpcrvis rethomics behavr Data structure to store and manipulate high throughput behavioural data in R rethomics damr Read TriKinetics' DAM data in R rethomics ggetho Visualise high throughput behavioural data in R, based on ggplot2 rethomics scopr Read Ethoscope data in R rethomics sleepr Analyse sleep from movement (e.g. in Drosophila) rethomics zeitgebr Circadian rhythm analysis and visualisation in R retina-dot-ai r-ext-numbers2words retostauffer Rcost R interface to COST Action 733 WLK (Wetterlagenklassifikation). retowyss appify Write R Get Apps! retowyss appifyr Write R Get Apps! retowyss transport.opendata.ch retrography OrientR A wrapper for OrientDB REST API interface in R rettopnivek Utility_Functions A R package consisting of a set of useful functions for modeling and plotting rettopnivek mle Convenience functions for maximum likelihood estimation rettopnivek nROUSE A R package for simulating and fitting the nROUSE model (Huber and O'Reilly, 2003) rettopnivek rtclean A R package for trimming outliers in response time data sets rettopnivek rtplots A collection of R functions for plotting response time and choice data rettopnivek seqmodels A R package with density and distribution functions for common RT models. rettopnivek utilityf A R package with a collection of useful functions for modeling and plotting. returnString mongoplyr Native R interface to the MongoDB aggregation pipeline reumandc reumannplatz Reuman lab working R package revbayes RevGadgets Postprocessing gadgets for output generated by RevBayes rexdouglass MeasuringLandscape Replication code to accompany the paper Measuring the Landscape of Civil War rexmacey AAUtilities rexmacey PGP Pretty Good Protection rexmacey SMML rexmacey TaxAlpha rexmacey TaxAwareAA Routines for tax-aware asset allocation. rexmacey forex rexthompson RHubTestPackage Temporary repository to test GitHub functionality reyzaguirre pepa Package for the Execution of Pre Cooked Analysis reyzaguirre rhep Raul Eyzaguirre's R code package reyzaguirre st4gi Statistical tools for genetic improvement R package rezazeiny amarProject rfaelens tdmore Framework for building a dose recommendation tool using Bayesian feedback on NLME models rfarouni ALTRE R Package rferrali banditr banditR rfhb ctrdata Aggregate and analyse information on clinical trials from public registers rfinalproject 2094-Final-Project Final project of BIOST 2094 rforge causality Read-only mirror of "causality" from r-forge SVN. rforge intclust Read-only mirror of "intclust" from r-forge SVN. rforge march Read-only mirror of "march" from r-forge SVN. rforge microclim Read-only mirror of "microclim" from r-forge SVN. rforge tdisplay Read-only mirror of "tdisplay" from r-forge SVN. rforge weimea Read-only mirror of "weimea" from r-forge SVN. rfsaldanha downloadDataSUS Download de dados do DataSUS e pré-processamento no R rfsaldanha microdatasus Download de dados do DataSUS e pré-processamento no R rfxf Rfdbk Working with COSMO feedback files in R rg28 ScrapeGoogleScholar To scrape google scholar and give output in a csv file rgcstats blendedLink blendedLink rgcstats distance.sample.size rgcstats loglogitlink loglogit link function for generalized linear modelling of binary data rgcstats surveyoutliers Various procedures to deal with outliers in survey data. rgiordan LRVBUtils Utilities for doing linear response variational Bayes in R rgiordan MicrocreditLRVB rgknight knightr R functions that are useful to me rgknight madese Get school data from Massachusetts DESE rgmantovani HpTuning Machine Learning Hyper-parameter Tuning processes rgmantovani IDMr Recommending algorithms of image description via Meta-learning rgmantovani MfeatAnalysis MfeatAnalysis is a meta-feature extractor. It gets meta-features from OpenML datasets to be useful in meta-learning projects. rgmantovani MfeatExtractor MfeatExtractor is an automated code for meta-feature extraction, based on mfe R package, useful for meta-learning projects. rgmantovani MtlMr rgmantovani TuningAnalysis Hyperparameter tuning analysis based on HpTuning project results. rgmantovani autoHyperBot rgmantovani metaFeatureExtraction rgmantovani postAnalysis rgmantovani randomBot Random hyper-parameter exploration for 'OpenML' datasets and 'mlr' classification algorithms rgmantovani simpleBot rgray1 bbcodelibrary R package for interaction with QCP code library at Bitbucket Cloud with the REST API rgriff23 CPG rgriff23 btw BayesTraits wrapper for R rgriff23 caRds Pretty caRds for special occasions rguliev test This is repo for testing rgustavs tidySalesforce tidy exports of salesforce data rgustavs tidyjira tidy exports of jira tickets rharlow86 quadprogXT This project seeks to expand the quadprog library of R to handle absolute value constraints and L1 preferences in the objective function. rhars metaconv rhee kmkrutils my small R language libraries rhlee12 RNRCS Public repository for the RNRCS package, which pulls data from NRCS for use in R. rhobis ConvergenceClubs Find Convergence Clubs rhobis fpdust This R package implements FPDUST spatial sampling (Fattorini and Ridolfi, 1997). rhobis lastnext Impute NA values by means of the Last-Next procedure rhochreiter modopt.matlab Modeling Optimization Problems with R - MatLab(R) compatibility functions rhochreiter scenarios Scenario Generation rhochreiter scenportopt Scenario-based Portfolio Optimization rhochreiter sendgridR Inofficial Sendgrid R Interface rhondabacher SCnorm Normalization for single cell RNA-seq data rhondabacher Trendy rhooahn sample-code Previous coding project [QFRM Package in CRAN] rhydar Chile-Project-Plan rhydar Metocean rhydar Nemoh riagrawal BikeSharePredict Watch riagrawal Cmpe273-Lab1 rian39 scilitlearn riatelab MTA Multiscalar Territorial Analysis riatelab cartography :globe_with_meridians: Thematic Cartography riazfidahusein MATools time series utilities in R riazfidahusein RFtools my personal R functions ricardo-bion ggradar radar charts with ggplot2 ricardo-bion ggtech ggplot2 tech themes, scales, and geoms ricardo-bion tmp ricardoochoa inotify Keep track of your processes in R keeping a record in the notification center or sending an imessage to your iPhone or any other device with the Messages app installed. ricardoochoa urban.context For a selected point in x-y coordinates, subset and summarise points found in an specified radius. ricardoscr MARA R Package with functions commonly used by DIE in project MARA. rich-d-wilkinson precision rich-d-wilkinson transprob An R implementation of the transprob function in Matlab. It estimates transition matrix for continious time Markov Chain. rich-iannone DiagrammeR Graph and network visualization using tabular data in R rich-iannone DiagrammeRsvg A utility package for providing SVG export to DiagrammeR graph diagrams rich-iannone PuffR An integrated system for dispersion modelling with CALPUFF. rich-iannone SplitR Use the HYSPLIT model from inside R and do more with it rich-iannone TrendAnalysis An R package for trend analysis of time-series data rich-iannone USAir US EPA air monitoring data for 1990–2015 rich-iannone UWHS R dataset containing information on UNESCO World Heritage Sites rich-iannone UnidecodeR Replace Unicode characters with sensible US-ASCII equivalents rich-iannone aetheRa Tools to acquire and work with upper air data. rich-iannone blastula Easily send great-looking HTML email messages from R rich-iannone graphical rich-iannone pointblank Validation of local and remote data tables rich-iannone stationaRy Get hourly meteorological data from one of thousands of global stations richardangell GbmExplainR Decompose gbm predictions into feature contributions richardangell h2oRtools Various tools to use with h2o from R richardangell library.loc R library() but restricted to a given directory (including dependencies) richardbeare emuExt Extra plotting and smoothing tools for emu speech package richardbeare emudata emudata R package from sourceforge richardbeare simcor Simulation of noisy correlation matrices richardbeare simpleitkRinstaller Trial of devtools based installer for SimpleITK R installer. richardbeare tRainspotting gtfs-r feeds from R, with leaflet maps richardbeare ultRa R package with functions for supporting ultrasound speech research richardbroome2002 iomlifetR An implementation of the IOMLIFET spreadsheets in R richardcase comissioncalc richardsc bioArgo Read MBARI Argo float data richardsc crMisc Miscellaneous functions richardsc mbari Read MBARI Argo float data richardsprague actino Open source personal microbiome utilities richcmwang Fars coursera project richelbilderbeek Cer2016 Community Ecology Research course 2016 richelbilderbeek K3Reviews Reviews of all K3 songs richelbilderbeek Pythagoras-function Compute the lenght of the longest side of a right-angled square. richelbilderbeek babette babette is an R package that combines beautier, beastier and tracerer richelbilderbeek beastier R package to run BEAST2 richelbilderbeek beastscriptr R package to generate the same BEAST2 XML parameter files as generated by BEAUti richelbilderbeek beautier R package to generate the same BEAST2 XML parameter files as generated by BEAUti richelbilderbeek experimentr My personal R experiments richelbilderbeek goodpracticeeighteen Goodpractice #18 richelbilderbeek goodpracticetwentyone Issue twentyone richelbilderbeek lumier R package to run BEAST2 richelbilderbeek nLTT Repository for the R nLTT package richelbilderbeek prde Professional R Development Example richelbilderbeek rcpps Rcpp examples richelbilderbeek ribir My personal R package richelbilderbeek soqpbd Stack Overflow question about installing an R package from a GitHub that has its DESCRIPTION in a subfolder richelbilderbeek statistical_rethinking My solutions to the exercises of 'Statistical Rethinking' by Richard McElreath richelbilderbeek tracerer tracerer, 'Tracer for R', is an R package to work with the output of BEAST2 richelbilderbeek travis_qmake_gcc_cpp11_rcpp Minimal project that uses qmake, GCC, C++11, Rcpp (and thus R code) and is tested by Travis CI richelbilderbeek travis_qmake_gcc_cpp11_rcpp11 Minimal project that uses qmake, GCC, C++11, Rcpp11 (and thus R code) and is tested by Travis CI richelbilderbeek travis_qmake_gcc_cpp14_rcpp Minimal project that uses qmake, GCC, C++14, Rcpp (and thus R code) and is tested by Travis CI richelbilderbeek travis_qmake_gcc_cpp98_rcpp Minimal project that uses qmake, GCC, C++98, Rcpp (and thus R code) and is tested by Travis CI richelbilderbeek travis_r_minimal Minimal project that uses R is tested by Travis CI richelbilderbeek travis_r_vignette R project with a vignette that is tested by Travis CI richelbilderbeek travis_r_vignette_with_pics R project with a vignette with pictures that is tested by Travis CI richelbilderbeek wiritttea WIRITTTE analysis richelbilderbeek wiritttes WIRITTTE simulation richfitz RcppR6 Code-generation wrapping C++ classes as R6 classes richfitz RedisHeartbeat Redis heartbeat support richfitz TRAMPR TRFLP Analysis and Matching Package for R richfitz approximate richfitz boxr Interface to 'termbox' (https://github.com/nsf/termbox) richfitz buildr richfitz cat richfitz cppinfo Extract C++ type information for use with R richfitz crater 🌋🌑📦 R client to the crate database (crate.io) richfitz cyphr :shipit: Humane encryption richfitz datastorr Simple data versioning and distribution richfitz datastorr.example richfitz dataverse Watch richfitz dataverse.example Watch richfitz dde :clock1130::soon::clock9: Delay differential equation solver richfitz diversitree diversitree: comparative phylogenetic analyses of diversification richfitz drat.builder Build tools for a drat richfitz encryptr http://richfitz.github.io/encryptr richfitz forest New Phylogenetics Data Structures in R richfitz ghwiki Tools for pushing files generated by R to a github wiki richfitz grader Numerical derivatives richfitz heartbeatr Redis heartbeat support richfitz ids :information_source: Simple random identifiers richfitz jiffy R interface to giphy 🏃 Pronounced "yiffy" richfitz kitten (this was just a demo package for teaching packaging!) richfitz ksi Komogorov-Smirnov Importance Statistic richfitz loggr.redis Redis support for loggr richfitz macrojc richfitz maker Deprecated: please use https://github.com/richfitz/remake richfitz odin ᚩ A DSL for describing and solving differential equations in R richfitz pathr Port of Python's os.path richfitz provisionr :package::package::arrow_right::classical_building: Provision a library of R packages richfitz queuer :walking::walking::walking: Prototype general queue richfitz rainbowrite Port of lolcat to R, providing a drop-in improved cat, warning and stop function richfitz rcmdshlib :construction_worker: Build shared libraries for R, from R richfitz redux :telephone_receiver::computer: Redis client for R richfitz remake Make-like declarative workflows in R richfitz remoji Emoji for R 😹 richfitz remotefile ☁️📁☁️ Download files when needed richfitz rfiglet R port of figlet richfitz ring :ring: Ring buffers richfitz rleveldb :office: LevelDB interface for R richfitz rlsoda R interface to liblsoda richfitz rmnist :one::writing_hand: R interface to the 'MNIST' collection of handwritten digits richfitz rodeint Interface to boost's odeint-v2 richfitz rrq :runner::runner::runner: Lightweight Redis queues richfitz seagull 🐦 Portable file locking richfitz simplemcmc richfitz sowsear Frictionless literate programming: generate knitr files from R scripts richfitz stegasaur Steganography for R richfitz stevedore :cloud::rowboat::whale::cloud: Docker client for R richfitz storr :package: Object cacher for R richfitz storr.bdb Berkeley DB driver for storr, using RBerkeley richfitz storr.server richfitz syncr 🔃 R interface to rsync richfitz testing An amazing package for estimating pi richfitz testing_old richfitz toxiproxyr ☣☣☣:chart_with_upwards_trend:☣☣☣ R interface to toxiproxy (http://toxiproxy.io) richfitz toxiproxyr.test richfitz vectoR Vector image utilities for R richfitz wood How much of the world is woody? richfitz wood_maker Port of wood to maker (demo purposes only) richielin mjp richiemorrisroe psychcv richiemorrisroe sfobjects Work on the stockfighter API richiemorrisroe stockfighterr A client for the Stockfighter API richiemorrisroe thesisR richierocks githunt Get email address from github username richierocks learningr Data and functions to accompany the book "Learning R". richierocks limma2 Linear Models for Microarray Data, Remixed richierocks pathological R package of utilities for handling paths, files and directories richierocks rebus richierocks rebus.base Core functionality for the "rebus" Package richierocks rebus.datetimes Date- and Time-related Functionality for the "rebus" Package richierocks rebus.numbers Number-related Functionality for the "rebus" Package richierocks rebus.unicode Unicode-related Functionality for the "rebus" Package richierocks runittotestthat Convert RUnit tests to testthat tests richierocks yelp R interface to the Yelp API richimax forgotten-effects R project forgotten effect richmaparker windsimu R package to simulate growth curve datasets with user-defined patterns of within-individual variation richrr TransNetDemo R package for an introduction to transkingdom network analysis richshaw rickett richysix biovisr Collection of functions for visualisations richysix geneExpr shiny App for visualising gene expression data richysix miscr Miscellaneous R functions richysix rnaseqVis package of functions for rnaseq data rickdonnelly pcvmodr Portable version of Oregon's TLUMIP commercial vehicle model rickqiu BasicCpp rickqiu pgen rickwargo lrequire In the fashion of 'node.js' , requires a file, sourcing into the current environment only the variables explicitly specified in the module.exports or exports list variable. ricky-kotecha backtest ricky-kotecha cointegration rickycant90 BMLgarch Financial modeling tools and orthogonal Markov Switching GARCH models rickygill01 MittagLeffler rickzhouwen HDtest ricoderks Rcpm Rcpm is my R package with some general functions to use within our group. ricompute bookr An R package to keep a log of the books you've read. ricompute llusmstats R helper functions for LLU SM stats classes ricompute ricomisc Ricompute Miscellaneous: R Helper Functions by and for RCL ricrossi qfars riebetob compareheight Package to compare heights of subjects riebetob mlr riebetob test1 riethmayer incusyte Transormation of incusyte data to a long format for easier calculations. rietho IPO A Tool for automated Optimization of XCMS Parameters riinuots tidyforest A workflow of tidyr(glm -> broom -> ggplot) rijpma cower rikenbit CCIPCA Candit Covariance-free Incremental Principle Component Analysis (CCIPCA) rikenbit FUCHIKOMA BAHSICとDiffusion Mapを利用した、非線形なPCAにおける主成分に寄与した遺伝子を特定する手法 rikenbit fuchikoma BAHSICとDiffusion Mapを利用した、非線形なPCAにおける主成分に寄与した遺伝子を特定する手法 rimolive RsspTool Ferramenta criada em R para facilitar a aquisição e manipulação dos dados de Boletins de Ocorrência (BO) da Secretaria de Segurança Pública do Estado de São Paulo rinnan CENFA Climate and Ecological Niche Factor Analysis rinnan gmailR rintakumpu custom-kmeans Provides a custom class for k-means clustering. rintukutum pRideMetadb A R-package for meta data query of PRIDE database rintukutum rdonuts Donuts plots in R rintukutum rpride PRIDE api for R rintukutum rpridemetadb PRIDEmetadb for R users rintukutum rpxmetadb proteomexchange meta db ririzarr bumphunter bumphunter ririzarr rafalib No description or website provided. rishi1226 classrish rishi1226 lClass rishisolanki ctgov_r_pkg R package for accessing and analyzing data from ClinicalTrials.Gov rishisolanki language_pack riteekteek cats Purpose: to learn how to upload R packages onto GitHub. rithwik bnets ritianjiang MethyAge ritianjiang MethyAge2 rivers-yao ICGC_gene_fusions rivolli mfe Meta-Feature Extractor rivolli utiml Utilities for multi-label learning riyazpanjwani trackeR A simple analysis of the run-time and code analysis of your R Code rizbicki FlexCoDE rjbgoudie mngr Make, Rake, Workflows etc for R rjbgoudie parental A very lightweight directed graph object and basic manipulation tools for R rjbgoudie structmcmc A set of tools for performing structural inference for Bayesian Networks using MCMC in R rjbgoudie teaclub Automated teaclub accounting in R rjbgoudie utils.rjbg Miscellaneous utility functions rje42 MixedGraphs rje42 contingency Methods for discrete multivariate probability distributions rje42 rje R package containing some useful miscellaneous functions rjkhan RCourse-lab3 rjkhan RCourse-lab4 rjkhan RCourse-lab5 rjkhan RCourse-lab6 rjkhan RCourse-lab7 rjkhan lab7-test rjournal rj A package for managing r journal metadata rjsaito bpqr This is a package-in-progress for a statistical technique for Bootstrapped Panel Quantile Regression. Currently I am hoping to contribute R code of statistical and mathematical procedures in hydrological research. rjsteckel boilkettle rjww R-utils Convenience package for my personal R utility functions rkillick EnvCpt A place for the development version of the changepoint package on CRAN. The master thread is that from CRAN. rkillick changepoint A place for the development version of the changepoint package on CRAN. rkmiec1234 Think-Bayes rkmiec1234 rako1python rkmiec1234 rakr Richard Kmieciak R Utility Package rkostadi BiocHopkins Hopkins Bioconductor Working Group rkrug TSS TSS (True Skills Statistics) package for R rkrug burningEmbers R Package to create Burning Embers graphs as used by IPCC rkrug fireSim R package to model fire spread in the landscape rkrug grassRLink Link GRASS and R via a C library to load date from GRASS directly into R rkrug logger Very basic progress logger for R using org-mode structured output format rkrug myTools rkrug plantuml R package to build UML graphs using plantuml rkrug prioritization R package to prioritize cells in a grid rkrug rGeoPackage Make usage of GeoPackage format in R easier rkrug seedDisp R package to model seed dispersal rkrug seedGerm R package to simulate seed germination rkrug seedProd R package to model seed production rksyouyou PedCNV rksyouyou Presentation rkuiper geneClassifiers R package to apply published gene classifiers rkuiper nopaco R package: Non Parametric Concordance Coefficient rkward-community XiMpLe A simple XML tree parser and generator rkward-community rk.ANOVA RKWard GUI to conduct ANOVAs (using the ez package), pairwise t-Tests and plot interactions rkward-community rk.ClusterAnalysis RKWard GUI to conduct k-means, model based and hierarchical cluster analyses rkward-community rk.CohenKappa RKWard GUI to calculate Cohen's Kappa rkward-community rk.FactorAnalysis RKWard GUI to conduct principal component and factor analysis rkward-community rk.MPT RKWard GUI for multinomial processing tree (MPT) models rkward-community rk.MultidimensionalScaling RKWard GUI for multidimensional scaling rkward-community rk.gitInstall GUI to install R packges directly from git or subversion repositories rkward-community rk.power RKWard GUI to perform power analysis and sample size estimation (included in RKWard >= 0.6.3) rkward-community rkwarddev A collection of tools for RKWard plugin development rladeira amrElm Affinity Matrix Regularized Extreme Learning Machine rladeira featureExtraction An R package containing some functions for feature extraction. rladeira rDatasets An R package containing a bunch of real and synthetic data sets formatted as R objects. rladeira rutils An R package with several utility functions. rladeira sequentialSearch An R package containing some greedy sequential search methods, namely: SFS, SBS, SFFS and SFBS. rladeira stacking rladies meetupr R interface to the meetup.com API rladies praise Praise useRs when they have done something good, or when they just need it rlbarter partitions rlbarter superheat An r package for generating beautiful and customizable heatmaps rlim hsdata rluo clime rluo pro rluo scio rmaia pavo tools for the analysis of color data in R rmalongo fundraisingr fundraising metrics analysis package rmarko ExplainPrediction R package ExplainPrediction rmartinvazquez Building-R-Packages rmartinvazquez ffrmv rmatev dplyr.root ROOT Backend for dplyr rmatev readcern Read Columnar Data At CERN with R rmcclosk meowchine-learning rmcd1024 derivmkts R package for option pricing rmcd1024 rmcd1024.github.io rmcelreath glmer2stan Define Stan models using glmer-style (lme4) formulas rmcelreath parasiticbehaviorsim R package for parasitic behavior and social learning simulations rmcelreath rethinking Statistical Rethinking course and book package rmcelreath wythamewa Wytham Woods Parus social learning analysis rmendels rerddapXtracto xtractomactic using rerddap rmendels xtractomatic xtractomatic R package for accessing environmental data rmflight RVignetteChanges examining the changing landscape in R vignettes since the inclusion of alternative vignette engines rmflight black_mirna_mrna_nsclc_network_enrichment network enrichment for miRNA mRNA data from NSCLC samples rmflight blogR static blogging like octopress / jekyll but using R and knitr instead of ruby rmflight categoryCompare Github repo of the categoryCompare meta-analysis package rmflight categoryCompare2 new version of categoryCompare that is a complete rewrite rmflight ccPaper All the data and analysis for the categoryCompare publication rmflight error_transformation paper, talk and poster on how data transformations affect error rmflight fakeDataWithError functions to generate fake data with specific amounts and types of error rmflight fmcorrelationbreastcaparp1 Analysis of nucleosome associated PARP1 reads in Breast Cancer cell lines rmflight fmdatabreastcaparp1 PARP1 data rmflight ismbTweetAnalysis analyzing two different years of ismb tweets rmflight knitrProgressBar progress bars that can provide information from inside knitr calls rmflight metabolomicsUtilities useful utilities in processing metabolomics data rmflight packagestructure constructs the graph of class relationships, including slots of S4 classes rmflight reup update your R library rmflight rmfNotifier simple R package for tweeting notifications from R rmflight rsaga Implementation of Simulated Annealing Genetic Algorithm in R rmflight socialmediascraping functions for me to scrape my own social media rmflight staticReader static rss reader using rawdog and R rmflight testEnvironment working with R custom package environments rmflight testOptionManipulation testing r manipulation of options rmflight timmysDensity figuring out the density of tim hortons in Canada rmflight trackWeight tracking my daily weight, and plotting it rmflight tt_trace_mre a minimal rep example of using trace to count function evals in testthat unit tests rmflight tweetJobStatus send a tweet to a user from an App about a function call rmflight vRbalExpressions verbal expression in R rmflight visualizationQualityControl visual methods for omics data set quality control rmflight waitcopy R package to allow copying within specific time and with intervals between copies rmnppt adzunar some R wrappers for the Adzuna api rmnppt newsR download news data using newsapi.org rmsharp Shiny_Health_Data rmsharp animalr R functions for managing animal database data rmsharp excelutilsr Convenience Functions for Working with Excel in R rmsharp getting_and_cleaning_data rmsharp histoplasmosisr Ed Dick's Histoplasmosis study 201407 rmsharp nprcmanager Implements Genetic Tools for Colony Management rmsharp rmsutilityr rmsharp snprcspf Functions used by the various SPF colony testing workflows rmsharp sportsanalyticsr Provides Tools to Compare NFL Teams Using Regular Season Summary Statistics rmsharp spssutilr SPSS data utilities using the rio package rmsharp tacr Total Animal Care R rmtrane QualityControl rmtrane ggtheme_transparent rmunoz12 chromeR Chromosome Visualization for R rmwthorne captrc Package for processing Capture-C data rmwthorne rangr Extended Functions For Manipulating GenomicRanges Objects rnabioco RcppLibBigWig Read bigWig and bigBed files in R rnabioco eda Practical Biological Data Analysis in R rnabioco valr Genome Interval Arithmetic in R rnabioco valrdata External data sets to analyze with valr rnaworld Package1 A silly package I wrote at SISBID17 rnorberg bastudy rnorberg geocodeR rnorm CatEncoders An R package that implements LabelEncoder and OneHotEncoder rnorouzian BayesianforL2 An R package for Promoting Bayesian Methods in L2 Research road2stat OHPL Ordered Homogeneity Pursuit Lasso for Group Variable Selection road2stat RECA Relevant Component Analysis for Supervised Distance Metric Learning road2stat Rcpi Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery. road2stat deeptest Data-Driven Unit Testing for R road2stat enpls Algorithmic framework for measuring feature importance, outlier detection, model applicability evaluation, and ensemble predictive modeling with (sparse) partial least squares regressions. road2stat ggsci Scientific Journal and Sci-Fi Themed Color Palettes for ggplot2 road2stat grex Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data road2stat hdmark Benchmarking Penalized Generalized Linear Models for High-Dimensional Data road2stat hdnom Benchmarking and Visualization Toolkit for Penalized Cox Models road2stat largetable road2stat liftr Containerize R Markdown Documents for Continuous Reproducibility road2stat minibench Lightweight benchmarking suite road2stat msaenet Multi-Step Adaptive Estimation Methods for Reducing False Positive Selection in Sparse Regressions road2stat ohpl Ordered Homogeneity Pursuit Lasso (OHPL) road2stat protr Comprehensive toolkit for generating various numerical features of protein sequences road2stat sbgr R Client for Seven Bridges Genomics API (v1) road2stat sdml Supervised Distance Metric Learning with R road2stat shinyStructure Interactive Visualization for STRUCTURE Models in Shiny road2stat tanka Single Page Design Website Generator road2stat vscode-rmarkdown road2stat xgrna Sequence Feature Extraction for Machine Learning Optimized CRISPR/Cas9 Guide RNA Selection robAndrewCarter rnaseqUtils Some functions, gadgets, and workflows used in single cell RNA Seq analysis robbriers biotic 'biotic' package for R: calculates UK freshwater invertebrate biotic indices robbriers bioticCR Repo for development of Costa Rican BMWP index package robbriers cde Repo for R package to query and download WFD data from the EA Catchment Data Explorer site robbriers mytools Repo for my collected R tools in a package format robert-horne SPAP robertbagchi ReplicatedPointPatterns R code to analyse replicated point patterns following Bagchi & Illian (2015) Methods in Ecology and Evolution. robertgambrel medicare R package to manipulate Medicare publicly available data robertgambrel tabler Quick publication tables of multiple models robertglegg test robertkck coursera Coursera R Packages course submission robertmitchellv babblr My personal R package with functions I use as well as code that makes my life easier--likely a bunch of nonsense that really only I would find useful! robertness artemis robertness bninfo Simulations, performance, and information theoretic manipulations of Bayesian networks in R robertness gmsim robertness graphninja robertness lucy lucy is a wrapper for the popular igraph package that is useful for building graphical models. robertness pathflow robertness signalgraph robertschnitman diagnoser Diagnostic tools for regression modeling robertschnitman schnitr Statistical modeling, diagnostics, and data management in R. robertsehlke SETHRO Simple Enrichment Testing for Highly Redundant Ontologies robertsy assimilr R implementation of the EnKPF, block-LEnKPF and naive-LEnKPF. robertsy lorenzr Lorenz models robertzk LookR Fixed version of LookR package robertzk RDS2 Slightly smarter (customizable) serialization for R robertzk Ramd AMD (asynchronous module definitions) in R robertzk allthepackages All robertzk packages robertzk amazonreviews R package for fetching Amazon reviews robertzk batbelt A collection of random R utility functions. robertzk berdie Berdie is an R package for synchronizing data sources across two separate layers robertzk bettertrace Better stack trace for R robertzk cachemeifyoucan An R caching layer robertzk frost Nested list cross-referential preprocessing engine robertzk grasshopper Grasshopper is an R framework for testing questions about classifiers coming from learning theory: convergence rate, estimation of empirical risk minimization potential, etc. robertzk hipchat R package for talking to Hipchat robertzk k "K" for R -- all the built ins are really short! robertzk linguine A simple R package for handling internationalization of warnings, errors, and messages. robertzk lockbox Bundler-style dependency management for R robertzk mappy An R package for managing shortcut maps in your Rprofile. robertzk microserver Minimal R server robertzk module An R namespace system that supersedes packages by allowing nesting robertzk monadicbase The R base library equipped with a history monad robertzk mungebits R mungebits robertzk mungebits.py robertzk objectdiff An R package for measuring differences between arbitrary R objects using patches, a la Git robertzk packagepackage Iterative operations on a collection of packages. Useful for R developers with many packages to maintain. robertzk parameterservr An R wrapper around DMLC's parameter server robertzk paris R tools for navigating the R syntax tree robertzk productivus A suite of productivity tools for R -- debugging, visualization, inline editing, etc. robertzk r-package-template A template for R packages robertzk recombinator R recombinators for turning nested lists into data.frames robertzk refclass A re-factoring of R's built-in reference classes to make the code understandable robertzk rnold IT'S SHOWTIME robertzk rocco Literate documentation for R packages in the spirit of Coffeescript's docco robertzk rokogiri An XML generator DSL in R, inspired by Ruby's Nokogiri robertzk rprofile A re-usable and modular Rprofile backed by AWS S3 robertzk rum Mocha for R robertzk s3mpi R message passing interface using S3 storage robertzk stackoverflow-r-companion R package to answer SO questions from the console robertzk statsUtils R Stats utils robertzk super Giving R the ability to invoke "parent" methods, solving the namespace collision issue robertzk syberia Syberia: The development framework for R robertzk syberiaMungebits Mungebits transformations robertzk syberiaStages A library of stages for the Syberia framework robertzk syberiaStructure Structural components of Syberia (e.g., file system traversal) robertzk testthatsomemore R package for extending testthat to more testing helpers robertzk treeSkeleton An OOP-type agnostic implementation of tree structure traversal in R robertzk vc.r A network interception testing / stubbing utility for R packages robinbing toy play robindeclaro rhdfsclient robingenuer CoVVSURF robingenuer VSURF Variable Selection Using Random Forests robinmyers sabr Sabermetric Functions for R robinsones rmemore replicates memore function robinspollak R.openFEC An R Wrapper for the Open FEC API robinvanemden contextual Contextual multi-armed bandit simulation and analysis robinweide GENOVA GENome Organisation Visual Analytics robinweide RHWlib robjhyndman MEFM-package R package to implement the MEFM robjhyndman Mcomp Data from the M-competitions robjhyndman addb Australian Demographic Data Base robjhyndman anomalous Anomalous time series package for R robjhyndman anomalous-acm Anomalous time series package for R (ACM) robjhyndman demography demography package for R robjhyndman expsmooth Data sets from the book "Forecasting with exponential smoothing: the state space approach" by Hyndman, Koehler, Ord and Snyder (Springer, 2008). robjhyndman fma Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998) robjhyndman forecast forecast package for R robjhyndman fpp All data sets required for the examples and exercises in the book "Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos. All packages required to run the examples are also loaded. robjhyndman hdrcde Highest density regions and conditional density estimation robjhyndman hts hts package for R robjhyndman indmortality Indigenous mortality R package developed for AIHW robjhyndman thief Temporal HIErarchical Forecasting robjhyndman tscompdata Time series competition data robjhyndman tsfeatures Time series features robjohnnoble ggmuller Create Muller Plots of Evolutionary Dynamics robkemp codemog Colorado State Demography Office Data robkemp codemogProfile Helper Functions for the Colorado Demography Office Profiles robkemp robR Personal R Package with Useful Functions roblanf communitree analysis of community assembly using phylogenetics in R roblanf pcurver R functions to analyse distributions of p values roblanf sangeranalyseR functions to analyse sanger sequencing reads in R robmoss ggplot2-theme-rgm A plotting theme for ggplot2 robotgames Course3Assignment robsalasco 2k15 robsalasco bases robsalasco sinimr Chilean Municipalities Information System Wrapper robschick elicitMS elicitMS robschick eliciteg eliciteg robschick pcod R Code for running the Interim PCOD Analysis robschick pcodData This has all the output from the elicitation and Carol Donovan's merging work robschick smokevis robschick tangled R package to do the analyses for the Knowlton, Schick et al. Manuscript robscott3 FLR4MFCL R4MFCL built with FLR classes robscott3 R4MFCL2 robtenorio countrystandard This is an R package with a function that corrects the spelling of country names and assigns a standard country name and country code of the user's choosing. robtenorio standardize robvanharrevelt expandr This package makes it possible to expand R expressions, with and without aggregation. robvanharrevelt presim R implementation of the Presim preprocessor robvanharrevelt regts Package for working with regular timeseries. rocalabern d3graph rocalabern d3graphsankey rocalabern fwftools rocalabern h2otools rocalabern mysqltools rocalabern rWidgets A set of custom HTML widgets for R rocalabern radarWidget HTMLwidget for plotting radar plots rocalabern rleaflet R leaflet package rocalabern rmodel R Package : rmodel rocalabern rplot R Package : rplot rocalabern textools A R package wrapper of different text operations rocalabern texttools A R package wrapper of different text operations rocalabern winssh rocalabern xsystem rocheben ibmR rockclimber112358 Italian rockclimber112358 MCLE Maximum Constrained Likelihood Estimators rockclimber112358 romeHousePrices Repository to store code analyzing house values in Rome. rocrat BDSS rocrat HTGPackage rocrat MBQ_Package R Package to implement MBQ HSI Models roctocomputing rocto-rpackage The R-package for rocto roctoproject rocto-rpackage The R-package for rocto rodat hw2 hw2 for Benjamin rodat hw2package666 no description rodazuero Rtauchen rodazuero gmapsdistance Future rodlammers countyfloods rodrigosantana FishMaps2 Producing maps for fishery data in batch mode, based on ggplot2 rodrigosantana Regrans Fits Segmented Linear Regression Models (R) rodrigour sd Standard Deviation Package rogelioandrade woeBinning rogerclarkgc estableiso0.99 A simple model to caculate the source apportion of dual stable isotope mixing system rogerjms tmcmbc semi tm rogiersbart RGLUEANN provides an R implementation of the coupling between general likelihood uncertainty estimation (GLUE) and artificial neural networks (ANN) rogiersbart RGSFUN provides a set of geostatistical functions to supplement existing geostatistical packages in R rogiersbart RMODFLOW provides a set of tools for groundwater flow modelling with MODFLOW rogiersbart RMT3DMS provides a set of tools for solute transport modelling with MT3DMS rogiersbart RRWPT rogiersbart groundwateR rogiersbart groundwaterr rogiersbart rtoolz rogiersbart rwptR rogiersbart rwptr rohan-shah magicCalling Code for genotype calling in the MAGIC population. rohan-shah mpMap2 New version of mpMap rohan-shah mpMapInteractive Interactive marker ordering code for the mpMap package rohan-shah mpMapInteractive2 Interactive marker ordering code for the mpMap2 package rohan-shah particleMethodsBernoulli particle methods for a simple Bernoulli example rohit43 DiabetesTxPath rohosen OBPSAE roilanhv ROLi Evaluates various downward longwave radiation parametrizations roilanhv longwaveR Evaluates various downward longwave radiation parametrizations roimartins postgisgeom roinaveiro acAra rokkie mrbr roland-h trajaggr Meaningful aggregation of trajectory data - to be integrated into the trajectories package rolandkrause fars rolandkrause ffars rolfsimoes massits Personal sits classification rolfsimoes scidbquery Personal scidb AFL generator for iquery roliveros-ramos calibrar Automated Parameter Estimation for Complex (Ecological) Models roliveros-ramos ibm Individual Based Models in R roliveros-ramos indiseas analysis of indiseas' model-based indicators roliveros-ramos kali Tools for habitat and niche modeling roliveros-ramos nctools Tools for manipulating netCDF files roliveros-ramos osmose Tools for running, calibrating and analyzing an OSMOSE model roliveros-ramos rosita Rosita, Rosita, Rosita... romagnolid PAMES Tool to estimate purity of tumor samples exploiting DNA Methylation data romagnolid PAMESdata Precomputed informative CpG sites and CpG islands to be used with PAMES package romain-louvet DotRules romainfrancois KNITRO R bindings for Knitro romainfrancois ROpenTurns R bindings for open turns via Rcpp romainfrancois RROOT romainfrancois Rcpp98 R and C++98. Alternative implementation of Rcpp for the 98 c++ standard romainfrancois Ruranie romainfrancois TimerPlot plot for data collected by Rcpp(11)?Timer class romainfrancois animals scrapping pictures of animals romainfrancois bibtex bibtex parser for R romainfrancois budflights budapest flights data from the Budapest satRday dataviz challenge romainfrancois cpasbien scrapping data from cpasbien romainfrancois emojirx Emoji Grammar romainfrancois evil.R Evil tricks for R romainfrancois highlight Syntax highlighter for R romainfrancois legislatives2017 Résultat des elections legislatives 2017 romainfrancois nothing A package about nothing romainfrancois operators Additional binary operators romainfrancois parallelGroupBy Rewriting the kernel of group_by in paralel romainfrancois siesta Generic tools to work with rest api romainfrancois tie Tie names to values romainfrancois tracker Time tracker and non sampling profiler tools romainfrancois travis Grab information from travis through the REST API romainfrancois trump instantly segfault your R session romainfrancois typo Helping people who make typos roman-gulati overdiag A package to investigate empirical estimates of overdiagnosis romanzenka RUnit Source code for the RUnit R package romarcha NewPackage rommelnc hudar High-Level Unstructured Data Analysis in R rommelnc runbbayes It provides integration to UnBBayes probabilistic framework using rJava romunov AED Package accompanying 2009 book by Zuur et. al. (Mixed Effects Models and Extensions in Ecology with R) romunov fishbone A package for automatic allele calling or flagging of Illumina next generation sequencing (NGS) data. romunov resamplediversity An accompanying package for a Heredity paper romunov stribog Visualizing police collected data. romunov wolfexplorer Explorer designed to visualize complex multi-year multi-specimen data. Case study of Slovenian wolves. romunov zakonodaja Koda s sekatona. romunov zvau Miscellaneous functions used at the Ecology group of Department of biology (University of Ljubljana) ronammar zFPKM Finding the active genes in RNA-seq gene expression studies rondolab MR-PRESSO Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method. roneyfraga bibr bbir - R package to manipulate bibliographic data rongmastat IceT0.2 R package rongmu phonosim Phonological Similarity ronkeizer PFIMwrap An R package that provides easy-to-use wrapper functions for PFIM ronkeizer PKPDplot Wrapper for plotting PKPDsim datasets using ggplot2 ronkeizer PKPDsim R library for simulation of PKPD models defined as ODE systems ronkeizer PKPDsimShiny Create Shiny apps on-the-fly based on ODE simulations with PKPDsim ronkeizer PKmisc Miscellaneous equations tools for clinical pharmacokinetics ronkeizer Rge Simple wrapper around the most common Grid Engine commands ronkeizer clinPK R module with equations for clinical pharmacokinetics ronkeizer vpc R library to create visual predictive checks (VPC) ronybsulca earthquakeGeoms Your friendly NOAA Earthquake-dataset visualizer ronybsulca numericColumns Your friendly numeric column reader. ronybsulca rsGeoms roopakrithi classnotes2 Notes from class roopakrithi rka1 Assignment 1 roopakrithi rka1b Looks right but package will not load ropengov enigma R client for the Enigma.io API ropengov eurostat R tools for Eurostat data ropengov rtimes R wrapper for NYTimes API for government data ropengov sorvi Algorithms for Finnish open goverment data ropengov sotkanet R Tools for the Sotkanet demographics indicator database (covering Finland and Europe) ropensci AntWeb An R wrapper for the AntWeb API ropensci EML Ecological Metadata Language interface for R: synthesis and integration of heterogenous data ropensci FedData Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources ropensci GSODR Global Summary Daily Weather Data in R ropensci IEEER Search IEEE publications in R ropensci RCryptsy Basic Public API for the Crypto-Currency exchange Cryptsy ropensci RMendeley Implementation of the Mendeley API in R (now on CRAN) ropensci RNeXML Implementing semantically rich NeXML I/O in R ropensci RSelenium An R client for Selenium Remote WebDriver ropensci RStars Access to the Digital Universe Data set ropensci RedisAPI R interface to the full hiredis API ropensci RefManageR R package RefManageR ropensci USAboundaries Historical and Contemporary Boundaries of the United States of America ropensci USAboundariesData Datasets for the 'USAboundaries' package ropensci aRxiv Programmatic interface to the Arxiv API ropensci agent Store sensitive data such as API tokens ropensci alm R client for the Lagotto almetrics API platform - ARCHIVED ON CRAN ropensci appl Wrappers for appl ropensci assertr Assertive programming for R analysis pipelines ropensci bib2df Parse a BibTeX file to a tibble ropensci bikedata :bike: Load data from public hire bicycle systems ropensci binomen taxonomic name classes and parsing methods ropensci biomartr Genomic Data Retrieval with R ropensci bittrex A R Client for the Bittrex Crypto-Currency Exchange ropensci bmc BMC interface for R ropensci bold Interface to the Bold Systems barcode website ropensci bomrang Australian Government Bureau of Meteorology Data From R ropensci branching I can haz all the phylogenies ropensci brranching I can haz all the phylogenies ropensci cartographer Interactive maps in R using d3-carto-map ropensci ccafs CCAFS GCM Data R Client (http://www.ccafs-climate.org/) ropensci charlatan Create fake data in R ropensci chromer package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il http://ropensci.org ropensci citeulike R interface to CiteULike. ropensci ckanr R client for the CKAN REST API ropensci cleanEHR Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC ropensci clifro Easily download and visualise climate data from CliFlo ropensci codemetar an R package for generating and working with codemeta ropensci crminer Crossref Text Mining Client ropensci crul http client for R ropensci cyphr :shipit: Humane encryption ropensci dappr OPeNDAP client ropensci dashboard A R package dashboard generator ropensci dataone-restful an interface to the dataone REST API (http://mule1.dataone.org/ArchitectureDocs-current/apis/MN_APIs.html) ropensci datapack An R package to handle data packages ropensci datapackage An R package to handle data packages ropensci defunct-obis R interface to the Ocean Biogeographic Information System ropensci dependencies ropensci docplyr activity moved to docbi...see url ropensci dvn Access to the Dataverse Network APIs from R ropensci ecoengine Programmatic interface to the Berkeley Ecoinformatics Engine ropensci ecoretriever R interface to the Ecological Data Retriver ropensci elastic R client for the Elasticsearch HTTP API ropensci elasticdsl Elasticsearch R DSL ropensci elife R interface to the eLife API ropensci etseed etcd R client ropensci europepmc R Interface to Europe PMC RESTful Web Service ropensci extractr Extract text from pdfs using various web and local APIs ropensci ezknitr Avoid the typical working directory pain when using 'knitr' ropensci finch Read Darwin Core Archive files ropensci fingertipsR ropensci floras Web page scraping for eFloras, including the Flora of North America ropensci ftp ftp for R ropensci fulltext Search across and get full text for OA & closed journals ropensci gender Predict Gender from Names Using Historical Data ropensci geojson GeoJSON classes for R ropensci geojsonio Convert many data formats to & from GeoJSON & TopoJSON ropensci geojsonlint GeoJSON linting for R ropensci geonames R package for accessing the geonames.org API ropensci geoparser :book: :globe_with_meridians: R package for the Geoparser.io API :globe_with_meridians: :book: ropensci getCRUCLdata Use and Explore CRU CL v. 2.0 Climatology Elements in R ropensci ggit Git visualization tools for git2r ropensci ghql General purpose GraphQL R client ropensci gigadb ropensci gistr Interact with GitHub gists from R ropensci git2r R bindings to the libgit2 library ropensci gitr git/github from R ropensci googleLanguageR R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API ropensci graphql Bindings to libgraphqlparser ropensci gtfsr Package for obtaining, validating, viewing, and storing GTFS (transit) data ropensci hathi R client for HathiTrust ropensci hddtools Hydrological Data Discovery Tools (R package for hydrology and open data) ropensci helminthR Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records. ropensci historydata Datasets for Historians ropensci hoardr manage cached files ropensci hunspell High-Performance Stemmer, Tokenizer, and Spell Checker for R ropensci iheatmapr Complex, interactive heatmaps in R ropensci internetarchive Search the Internet Archive, retrieve metadata, and download files ropensci isdparser NOAA ISD/ISH file parser ropensci jqr R interface to jq ropensci jsonld Wrapper for jsonld.js JavaScript library ropensci jsonvalidate ✔️⁉️ Validate JSON ropensci lawn turf.js R client ropensci lingtypology R package for linguistic cartography and typological databases search ropensci magick Magic, madness, heaven, sin ropensci mapr Map species occurrence data ropensci mdextract package to extract metadata from data ropensci mocker Cache API calls to the web ropensci mocking ropensci monkeylearn 🐒 R package for text analysis with Monkeylearn 🐒 ropensci musemeta R Client for scraping museum metadata ropensci mutant ropensci natserv NatureServe R client ropensci neotoma Programmatic R interface to the Neotoma Paleoecological Database. ropensci nodbi Document DBI connector for R ropensci oai OAI-PMH R client ropensci opencage :globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians: ropensci opencontext ropensci originr Species origin data from the web in R ropensci osmplotr Data visualisation using OpenStreetMap objects ropensci ots ocean time series datasets ropensci paleobioDB R interface to the Paleobiology Database ropensci pangaear R client for the Pangaea database ropensci patentsview An R client to the PatentsView API ropensci pdftools Extract Text and Data from PDF Documents ropensci peg ropensci phylocomr phylocom R interface ropensci pleiades R client for Pleiades DB (https://pleiades.stoa.org/home) ropensci plotdap ropensci plotly An interactive graphing library for R ropensci prism Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/ ropensci proj R wrapper for proj4js ropensci pubchunks Get chunks of XML format scholarly articles ropensci rAltmetric Query and visualize metrics from altmetric.com ropensci rAvis rAvis: an R-package to download the information stored in “proyectoavis”, a citizen science bird project. ropensci rDrop2 ropensci rGEM A wrapper around GEM data ropensci rImpactStory Programmatic interface to the Total Impact API ropensci rWBclimate R interface for the World Bank climate data ropensci randgeo random WKT or GeoJSON ropensci rbhl R interface to the Biodiversity Heritage Library (BHL) API ropensci rbison Wrapper to the USGS Bison API ropensci rchie An R parser for ArchieML ropensci rcore CORE API R Client ropensci rcoreoa CORE API R Client ropensci rcrossref R client for various CrossRef APIs ropensci rdat An R interface to data Dat ropensci rdatacite Wrapper to DataCite metadata ropensci rdataretriever R interface to the Data Retriever ropensci rdefra rdefra: Interact with the UK AIR Pollution Database from DEFRA ropensci rdopa R client to Joint Research Centre's DOPA REST API ropensci rdpla DPLA R client ropensci rdryad R client for Dryad web services ropensci rebird Wrapper to the eBird API. ropensci reeack Riak R client ropensci refimpact API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database ropensci rentrez talk with NCBI entrez using R ropensci reol Programmatic interface to the Encyclopedia of Life - http://eol.org/ ropensci rerddap R client for working with ERDDAP servers ropensci reuropeana R Client for Europeana ropensci rfigshare Programmatic interface for Figshare ropensci rfishbase R interface to the fishbase.org database ropensci rfisheries package for interacting with fisheries databases at openfisheries.org ropensci rflybase A wrapper to FlyBase data ropensci rgauges Interface to Gaug.es API ropensci rgbif Wrapper to the Global Biodiversity Information Facility API ropensci rglobi R library to access species interaction data of http://globalbioticinteractions.org ropensci rgpdd Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd ropensci rhindawi R interface to the Hindawi Journals metadata and corpus ropensci riem ✈️ ☀️ R package for accessing ASOS data via the Iowa Environment Mesonet ☁️ ✈️ ropensci rif Neuroscience Information Network R client ropensci rinat A programmatic interface to iNaturalist ropensci ritis Integrated Taxonomic Information Service (ITIS) R client ropensci rjsonapi jsonapi R client ropensci rmetadata Get scholarly metadata from around the web. ropensci rnbn Access to NBN data from R ropensci rnoaa R interface to many NOAA data APIs ropensci rnpn R client for the National Phenology Network database API ropensci ro ropensci package manager ropensci roadoi Use oaDOI.org with R ropensci ropenaq :earth_americas: :earth_africa: :earth_asia: R package for the OpenAQ API :earth_americas: :earth_africa: :earth_asia: ropensci ropensciDemos Package that demonstrates capabilities of our suite ropensci ropensciToolkit Helper functions for ropensci packages ropensci ropkgs Discover and install ropensci packages ropensci rorcid A programmatic interface the Orcid.org API ropensci rostats ropensci rotl Interface to Open Tree of Life API ropensci rpensoft Wrapper to PENSOFT journals web services. ropensci rperseus Get primary texts from the Perseus Digital Library ropensci rplos R client for the PLoS Journals API ropensci rpmc R interface to PubMed Central article metadata. ropensci rpwt Pensoft Writing Tool R client ropensci rredlist IUCN Red List API Client ropensci rrlite R interface to rlite https://github.com/seppo0010/rlite ropensci rrricanes Web scraper for Atlantic and east Pacific hurricanes and tropical storms ropensci rrricanesdata Supporting dataset for R package rrricanes ropensci rseaaroundus Access Sea Around Us catch data and view it as dataframes or stacked area charts ropensci rsnps Wrapper to a number of SNP web APIs ropensci rspringer Wrapper for the Springer Journals API ropensci rtimicropem :mask: R Package for the Analysis of RTI MicroPEM Output Files :mask: ropensci rusda Interface to USDA Databases ropensci rvertnet Wrapper to the VertNet API ropensci sandbox Interface to many altmetrics data services. ropensci scrubr Clean species occurrence records ropensci seaaroundus Access Sea Around Us catch data and view it as dataframes or stacked area charts ropensci sheetseeR A quick and easy interface to Google Docs + SheetSee.js ropensci sofa easy R interface to CouchDB ropensci solr A general purpose R interface to Solr ropensci solrium A general purpose R interface to Solr ropensci spelling Tools for Spell Checking in R ropensci spocc Species occurrence data toolkit for R ropensci spoccutils spocc utilities ropensci spsqlite SQLite Spatial Client ropensci stplanr R package providing functions and data access for transport research ropensci tabulizer Bindings for Tabula PDF Table Extractor Library ropensci tabulizerjars Java '.jar' Files for 'tabulizer' ropensci taxa taxonomic classes for R ropensci taxize A taxonomic toolbelt for R (https://ropensci.github.io/taxize/) ropensci taxizedb Tools for Working with Taxonomic SQL Databases ropensci taxizesoap taxize but for SOAP data sources ropensci taxview Summarise and visualize data sets wrt taxonomy ropensci tesseract Bindings to Tesseract OCR engine ropensci testdat A package to run unit tests on tabular data ropensci textreuse Detect text reuse and document similarity ropensci tidyhydat An R package to import Canadian hydrometric data and make it tidy ropensci tif Text Interchange Formats ropensci tokenizers A Consistent Interface to Tokenize Natural Language Text ropensci traits Species traits data ropensci treebase An R interface to the treeBASE API (now on CRAN) ropensci ucipp uci machine learning datasets ropensci vcr Record HTTP calls and replay them ropensci visdat Preliminary Exploratory Visualisation of Data ropensci weathercan R package for downloading weather data from Environment and Climate Change Canada ropensci webchem Chemical Information from the Web ropensci webmockr R library for stubbing and setting expectations on HTTP requests ropensci wellknown WKT <-> GeoJSON ropensci wikitaxa taxonomy data from Wikipedia/Wikidata/Wikispecies ropensci worrms World Register of Marine Species R client ropensci zenodo Deposit data (or any research object) into Zenodo ropenscilabs apipkgen Generate an R package from API specs ropenscilabs arresteddev ropenscilabs aspacer ArchiveSpace R client ropenscilabs assertr Assertive programming for R analysis pipelines ropenscilabs atomize atomize functions within a package into new packages ropenscilabs au-test ropenscilabs available Check if a package name is available to use ropenscilabs camsRad R Client for CAMS Radiation Service ropenscilabs ccafs CCAFS GCM Data R Client ropenscilabs charlatan create fake data ropenscilabs checkers Automated checking of best practices for research compendia ✔️ ropenscilabs cmip R Client for CMIP data ropenscilabs cmipr R Client for CMIP data ropenscilabs codefinch :chicken: An RStudio Addin for Tweeting Your Code ropenscilabs colorpiler http://ropenscilabs.github.io/colorpi… ropenscilabs convertr Extensive unit conversion in R ropenscilabs cored CORE API R Client ropenscilabs craft Extra functions to be used with the miner package ropenscilabs crevents Client for the Crossref Event Data API ropenscilabs cricinfo ropenscilabs crminer Crossref Text Mining Client ropenscilabs crul http client for R ropenscilabs datapkg Read and Write Data Packages ropenscilabs datasauce Generate json-ld for Datasets following Google's schema.org standard for structured data ropenscilabs dbhydroR R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree: ropenscilabs dirdf R package: Return a directory listing as a data frames ropenscilabs dissem Dissem.in R Client ropenscilabs dissemr Dissem.in R Client ropenscilabs eechidna Data package containing tables, shapefiles, etc. for the 2013 and 2016 Australian elections and 2011 Australian census ropenscilabs ezknitr Avoid the typical working directory pain when using 'knitr' ropenscilabs fauxpas fauxpas does http errors ropenscilabs flipper Make it easy to flip through R packages from CRAN, Bioconductor, and GitHub ropenscilabs gauth All the Google auth things ropenscilabs gdoc Mixed Google/R workflows ropenscilabs geoaxe Chop up polygons into pieces ropenscilabs geofilter filter/sift GeoJSON in R ropenscilabs geojson GeoJSON classes for R ropenscilabs geojsonlint lint GeoJSON ropenscilabs geojsonrewind enforce polygon ring winding order for geojson ropenscilabs geolocart ropenscilabs geoops geoops does spatial operations on geojson ropenscilabs geoparser 📖 🌐 R package for the Geoparser.io API 🌐 📖 ropenscilabs getlandsat get landsat 8 images and metadata ropenscilabs gtfsr Package for obtaining, validating, viewing, and storing GTFS (transit) data ropenscilabs gutenbergr Search and download public domain texts from Project Gutenberg ropenscilabs hoasts host/parasite data from occurrence databases ropenscilabs httparser Parse Raw HTTP Requests into API Wrapper Functions ropenscilabs jaod R client for Directory of Open Access Journals API ropenscilabs laselva FIA data client ropenscilabs leafier to be decided ropenscilabs microdemic microsoft academic client ropenscilabs miner R package for controlling Minecraft via API ropenscilabs miner.extra Extra functions to be used with the miner package ropenscilabs monkeylearn 🐒 R package for text analysis with Monkeylearn 🐒 ropenscilabs mregions MarineRegions R client ropenscilabs mwparser A parser for Wikimarkup ropenscilabs natserv NatureServe R client ropenscilabs nneo NEON API Client ropenscilabs notary :lock_with_ink_pen::package: Signing & verification of R packages ropenscilabs notifier ropenscilabs ochRe Australia-themed Colour Palettes ropenscilabs opencage 🌐 R package for the OpenCage API -- both forward and reverse geocoding 🌐 ropenscilabs originr Species origin data from the web in R ropenscilabs osmplotr Customisable images of OpenStreetMap (OSM) data and data visualisation using OSM objects ropenscilabs ozrepro stow: simpler version control from R ropenscilabs phyrmeta Client to Handle Phylometa Output ropenscilabs plater Tools to make it easy to work with microtiter plate-shaped data ropenscilabs ponyexpress ropenscilabs rbace BASE R client ropenscilabs rbraries Libraries.io API client ropenscilabs rcheatsheet Cheatsheets for R ropenscilabs rdefra An R package to interact with the UK AIR pollution database from DEFRA ropenscilabs realtime ropenscilabs rftdoi R client for ftdoi.org ropenscilabs rgeospatialquality R wrapper for the Geospatial Data Quality REST API ropenscilabs ridb client for Index Database of remote sensing indices ropenscilabs riem ✈️ ☀️ R package for accessing ASOS data via the Iowa Environment Mesonet ☁️ ✈️ ropenscilabs riodata Access data from Rio de Janeiro, Brazil ropenscilabs riris IRIS R client ropenscilabs rnaturalearth :earth_africa: an R package to hold and facilitate interaction with natural earth map data ropenscilabs rnaturalearthdata to hold data used by rnaturalearth ropenscilabs rnaturalearthhires high resolution naturalearth data for rnaturalearth ropenscilabs rnoaa R interface to many NOAA data APIs http://ropensci.org/tutorials/rnoaa_tutorial.html (now with moar crunchy meteo goodness!) ropenscilabs robotstxt robots.txt file parsing and checking for R ropenscilabs ropenaq 🌎 🌍 🌏 R package for the openaq API 🌎 🌍 🌏 ropenscilabs rredlist IUCN Red List API Client ropenscilabs rtd Read the Docs ropenscilabs rwdpa World Database of Protected Areas R client ropenscilabs scatr client for Scholastic Commentaries and Texts Archive ropenscilabs scatrr client for Scholastic Commentaries and Texts Archive ropenscilabs scitations citations client ropenscilabs scrubr Clean species occurrence records ropenscilabs seasl Load CSL styles and locales in R, and inspect contents ropenscilabs sheetseeR ropenscilabs siftgeojson ropenscilabs skimr ropenscilabs snowball Automatically start a cluster of worker nodes to do parallel processing ropenscilabs sparqldsl SPARQL DSL for R ropenscilabs spenv Combine environmental and spatial data ropenscilabs splister match species list against reference list ropenscilabs spplist ropenscilabs spplit connect species occurrence data to literature ropenscilabs tRainspotting gtfs-r feeds from R, with leaflet maps ropenscilabs tabulizer Bindings for Tabula PDF Table Extractor Library ropenscilabs taxa taxonomic classes for R ropenscilabs taxizedb Tools for Working with Taxonomic SQL Databases ropenscilabs test ropenscilabs testrmd Test chunks for R Markdown. ropenscilabs tic Tasks Integrating Continuously: CI-Agnostic Workflow Definitions ropenscilabs timeraster ropenscilabs travis Set Up Travis for Testing and Deployment ropenscilabs urltemplate R implementation for URL templating following RFC6570 ropenscilabs vcr Record HTTP calls and replay them ropenscilabs webmockr R library for stubbing and setting expectations on HTTP requests ropenscilabs wikitaxa taxonomy data from Wikipedia/Wikidata/Wikispecies ropenscilabs zissou AquaMaps (http://www.aquamaps.org/) Interface roqe T2GA This package provides some functions to analysis quantitative proteomic data. roqua autovar A package to automate and simplify the process from raw data to VAR models. roqua autovarCore Automated Vector Autoregression Models and Networks roqua zelfiAutovar Zelfi script for running Autovar roryk bcbioRnaseq Quality control and differential expression for bcbio RNAseq experiments roryk bcbioSinglecell R package of utility functions for analyzing bcbio-nextgen singlecell RNA-seq data rorynolan ccnandb Cross-correlated number and brightness image analysis rorynolan detrendr An R package for detrending images. rorynolan exampletestr An R package for help with writing unit tests based on examples in documentation. rorynolan filesstrings A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to rename microscopy image names sensibly. rorynolan nandb An R package for performing number and brightness analysis as in Digman et al. 2008. rorynolan roryverse roryrudolph RorysRUtils rosalieken prfaroke foo rosap test test for rEHR package rosap testrEHR rosdyana ROpenDota An R package that works as an API client for DOTA2 based on OpenDota rosehartman frog-trap Rosie and Noam's R project the best ways to trap frogs. Theoretically. rosemm FrequencyFilter The Frequency Filter, for identifying patterns in child speech that cannot be explained by the corresponding frequencies in child directed speech. rosemm corpus_utils functions for working with CHILDES corpora rosette-api R-Binding R client binding for the Rosette API roslen mxr A Package of GWAS Pipeline Building Blocks rossbowen spotifyapi spotifyapi rosseji TLdevel Exploratory tools for TL rosseji TLlibrary internal functions for TLdevel rosseji buildr bundling tools for TL rosseji dev new development for TL rosseji devel TL developer code rosseji humbug a humbug rosseji scraper scraping tools rosseji test test rosseji toolkit under the hood tools for TL rosshandler padicRNA rossholmberg holmberg R package rossholmberg holmbergWindows rossholmberg pkgButterfly Calculating and utilising a "dynamic area of influence" based on ocean currents. rossholmberg rcsv rcsv: Working on a better csv format rossibarra rare_alleles_imputation rossklin SimpleSDESampler clone of my SimpleSDESampler from gitorious for R shiny access rossklin bootpan clone of Tilo's bootpan from gitorious for R shiny access rossklin dynpan clone of Tilo's dynpan from gitorious for R shiny access rossklin flanner clone of Tilo's flanner from gitorious for R shiny access rossklin timetablr clone of Tilo's timetablr from gitorious for R shiny access roszenil CCDBcurator roszenil chromploid R package for chromosome number and binary trait change models rotterp RTutorMachineLearningAndCreditDefault Interactive Analysis in R - Machine Learning And Credit Default rotterp RTutorOnlineDisclosure Interactive Analysis with R of Asymmetric Information, Adverse Selection & Online Disclosure in used good auctions roualdes spiders predator preferences model roundforest rkafka roverrobot make royfrancis drtracker An R package to track movement of single Zebrafish larvae in 24 or 48 well assay plates. royfrancis iscrape A basic web scrapper for Instagram royfrancis pophelper An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc. royfrancis pophelperSpatial An R package that incorporates spatial/geographic data with q-matrices such as ADMIXTURE, fastSTRUCTURE, STRUCTURE, TESS etc. royfrancis test test repo royr2 plotlyvis plotlyvis roywilsonLinc gbmFns Helper functions for gbm modelling roywilsonLinc l1tfplus Functions for fitting l1 trend filtering rpahl GroupSeq An R package providing a GUI-Based Tool to Compute Probabilities of Group Sequential Designs. rpahl Squash A shiny application to simulate and visualize Squash matches. rpahl dyrt An R package providing *dy*namic *r*eporting *t*ools for statistical reports. rpajou predsims testing rparrish FARSmap An R package to generate maps from the the US National Highway Traffic Safety Administration's Fatality Analysis Reporting System. This is the Week 4 assigment of the Coursera Building R Packages Mastering R series rparrish GAMUT R Functions that support the GAMUT database. rparrish MyPackage a demo for INRUG meeting, July 20, 2015 rparrish RPamisc Miscellaneous R functions rparrish medr Morphine Equivalent Dosages in R. rpatin PatchExplo rpatin crepuscule Find sun events for longitude, latitude and date rpatin drinking rpatin ggtools Additional tools based on ggplot2 package rpatin gpstools Usefull tools for animal GPS data analyses rpatin mapvisit rpatin movegraph rpatin pad.trajectory rpatin pdfbookmarks create bookmarks for pdf files rpatin segclust2d Tools for segmenting trajectories rpatin segtools Tools for segmenting trajectories rpatin voronoi R package to create voronoi polygons from spatial points rpradosiqueira brazilmaps A R package with different geographic levels of brazilian maps rpradosiqueira cptec An R interface to the CPTEC/INPE API rpradosiqueira datasus A R Interface to the DATASUS's data rpradosiqueira sidrar A R interface to IBGE's SIDRA API rpremraj mailR A utility to send emails from the R programming environment rpribeiro uba The uba package is developed in R and comprehends a set of tools designated for regression algorithms in non-uniform costs domains. Namely, it includes utility-based performance metrics, utility-based curves and an utility-based regression rules ensemble system. A more complete description of these functionalities is available on http://www.dcc.fc.up.pt/~rpribeiro/publ/rpribeiroPhD11.pdf . rprops Phenoflow_package R package offering functionality for the advanced analysis of microbial flow cytometry data rpruim ISIwithR Companion to Introduction to Statistical Investigations by Tintle et al rpruim Lock5Data Data sets for Statistics: Unlocking the Power of Data by the Five Locks rpruim Lock5withR R Companion to Lock5 Intro Stats Book rpruim NHANES R package with NHANES data rpruim Teaching-Statistics-With-R rpruim collaborate Collaborative utilities for R rpruim cvc2017 demo package for CVC 2017 workshop rpruim deltaMethod deltaMethod R package rpruim fastR Foundations and Applications of Statistics: An Introduction Using R rpruim fastR2 Foundations and Applications of Statistics: An Introduction Using R rpruim ggvis2 second fork of RStudio/ggvis rpruim grading R utilities for grading rpruim mosaicManip manipulatable applets from Project MOSAIC rpruim rjp miscellaneous R utilities rpruim webwork R package for WeBWorK rpsychologist powerlmm powerlmm R package for power calculations for two- and three-level longitudinal multilevel/linear mixed models. rqtl qtl2 QTL analysis software for high-dimensional data and complex cross designs rqtl qtl2bioc R/qtl2 module for connecting to Bioconductor rqtl qtl2cl Command-line interface for R/qtl2 rqtl qtl2convert R package for converting data among R/qtl2, DOQTL, and R/qtl rqtl qtl2db R/qtl2 module for connecting to genome databases rqtl qtl2geno R/qtl2 module for treatment of genotypes (imputation, probability calculation, map estimation) rqtl qtl2plot R/qtl2 module for data visualization rqtl qtl2scan R/qtl2 module for QTL analysis, including genome scans rr1859 R.4Cker rramaker CooperR2DGC rramaker GRNF rramaker R2DGC rrbest arkR rresults resumetailor rrevansUM iomDisparity Functions to perform rank and replace method of adjustment for racial disparities in R rricepackage rRice rromoli flagme Process, visualise and analyze sets of GC/LC-MS based data rrrlw KzooStats R package for use in the Mathematical Statistics course (MATH-365) at Kalamazoo College. Essentially a custom selection of prepared data sets from other sources. rrrlw dragonking rrrlw temppkg rsachse limnotools R package providing older help tools of TU Dresden's Limnology Workgroup rsamantha LCMSexplore rsangole tidyrabbit rsaporta collectArgs R package for quickly and neatly collecting arguments from one environment to pass to another rsaporta getfunced function parsers and documenters for R rsaporta rcreds Tools to Use Secure Credentials Within R Scripts #rstats rsaporta rsutils Parent Package to the several RS Utilities packages rsaporta rsutils3 rsbivand classInt Choose Univariate Class Intervals rsbivand rgrass7 rsbraun mytestpkg test package rscharpf MixModelViz Plot empirical data with theoretical predictions rscharpf VanillaICE Hidden Markov Models for identifying chromosomal alterations in high throughput SNP arrays rscharpf crlmmCompendium Using the R Package crlmm for Genotyping and Copy Number Estimation (2011), Journal of Statistical Software rschenck RDAViz Redundancy Analysis and visualization for model parameterization rsdoiel aspacer Just playing around with ArchivesSpace and R rsdoiel asr A experimental package for interacting with ArchivesSpace's REST API rsh249 CRACLE End of disseration CRACLE code rsh249 vegdistmod R library for the analysis of spatial biodiversity data. Including tools to estimate climate from species coexistence including CRACLE and Thompson's Mutual Climatic Range technique. rsheets cellranger Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification rsheets jailbreakr Get out of Excel free. rsheets linen General representation of spreadsheet data, plus some limited low-level operations on that data rsheets rexcel Extracts spreadsheet data from Excel workbooks and puts into linen format rsilvabioinfo ProbMetab Provides probability ranking to candidate compounds assigned to masses, with the prior assumption of connected sample and additional previous and spectral information modeled by the user. rsingle ALD-measure ALD measure repository rsingle ALD-vis rsingle LDtools rsingle asymLD_CRAN rsnotivoli reddPrec Reconstruction of Daily Data - Precipitation rsquaredacademy blorr Tools for developing and monitoring binary logistic regression models rsquaredacademy descriptr Generate descriptive statistics and explore statistical distributions rsquaredacademy inferr Parametric and non-parametric statistical tests rsquaredacademy olsrr Tools for developing OLS regression models rsquaredacademy rfm Recency, Frequency & Monetary Value Analysis rsquaredacademy segmentr Tools for customer segmentation analysis rsquaredacademy xplorerr Shiny apps for data exploration, visualization and modeling. rsquaredin dataviz Watch rsquaredin simple Watch rstats-db DBI A database interface (DBI) definition for communication between R and RDBMSs rstats-db DBItest Testing DBI drivers rstats-db RKazam A boilerplate for DBI drivers, fully DBI-compliant rstats-db RMariaDB An R interface to MariaDB rstats-db RMySQL An R interface for MySQL rstats-db RPostgres A DBI-compliant interface to PostgreSQL rstats-db RSQLite R interface for SQLite rstats-db SQL Helper functions for generating SQL code rstats-db bigrquery An interface to Google's bigquery from R. rstats-db blob A simple S3 class for representing BLOBs rstats-db hms A simple class for storing time-of-day values rstats-db odbc Connect to ODBC databases (using the DBI interface) rstats-db rmysql An R interface for MySQL rstats-lab RSmartlyIO Loading Facebook and Instagram Advertising Data from Smartly.io into R rsteele7 590_final Repo to hold growbac package for 590 final rsteele7 task_09 rstudio DT R Interface to the jQuery Plug-in DataTables rstudio EDAWR Data sets to support the Expert Data Analysis with R workshop rstudio R-Websockets HTML 5 Websockets implementation for R rstudio addinexamples An R package showcasing how RStudio addins can be registered and used. rstudio blogdown Create Blogs and Websites with R Markdown rstudio bookdown Authoring Books and Technical Documents with R Markdown rstudio cloudml Cloud ML interface for R rstudio config config package for R rstudio crosstalk Inter-htmlwidget communication for R (with and without Shiny) rstudio d3heatmap A D3.js-based heatmap htmlwidget for R rstudio dbtest Automates testing of vector expressions of SQL translations for dplyr rstudio dygraphs R interface to dygraphs rstudio flexdashboard Easy interactive dashboards for R rstudio flights2 An expanded version fo the flights data set in the nycflights13 package rstudio gggeom Computational code for ggvis rstudio ggvis Interactive grammar of graphics for R rstudio gitdown blogdown extension for package websites rstudio htmllayout HTML layout using GSS (an experimental prototype) rstudio htmltools rstudio httpuv rstudio keras R Interface to Keras rstudio leaflet R Interface to Leaflet Maps rstudio manipulate rstudio markdown Markdown rendering for R rstudio miniUI rstudio packrat Packrat is a dependency management system for R rstudio pool Object Pooling in R rstudio profvis Visualize R profiling data rstudio promise A promise library for R rstudio promises A promise library for R rstudio reportsWS Tools for teaching R Markdown and Shiny rstudio revealjs R Markdown Format for reveal.js Presentations rstudio rmarkdown Dynamic Documents for R rstudio rmdexamples rstudio rsconnect Deployment interface for Shiny applications rstudio rscrypt scrypt cryptographic functions for R rstudio rstudio-connections-example R package example with support for extending RStudio connections rstudio rstudioaddins An example R package, demonstrating how RStudio Addins can be created and exported. rstudio rstudioapi Safely access RStudio's API (when available) rstudio rticles LaTeX Journal Article Templates for R Markdown rstudio shiny Easy interactive web applications with R rstudio shiny-incubator Examples and ideas that don't belong in the core Shiny package and aren't officially supported. rstudio shinyBS2demo R package demonstrating how to use shinyBootstrap2 rstudio shinybootstrap2 Bootstrap 2 components for Shiny rstudio shinydashboard Shiny Dashboarding framework rstudio shinygadgets rstudio shinyloadtest Tools for load testing Shiny applications rstudio shinytest Automated testing for shiny apps — https://rstudio.github.io/shinytest/ rstudio shinythemes Themes for Shiny rstudio sparkapi Sparklyr Extensions API rstudio sparklyr R interface for Apache Spark rstudio swagger Swagger is a collection of HTML, Javascript, and CSS assets that dynamically generate beautiful documentation from a Swagger-compliant API. rstudio system2.5 rstudio tensorflow TensorFlow for R rstudio tfdatasets R interface to TensorFlow Datasets API rstudio tfdeploy tfdeploy: Deploy Tensorflow Models from R rstudio tfestimators R interface to TensorFlow Estimators rstudio tflearn rstudio tfruns rstudio tufte Tufte Styles for R Markdown Documents rstudio webdriver WebDriver client in R — Work in Progress rstudiobook AbcForR Example R package implementation abc formula, R Studio Book, Expression Guide. rstux gbcatalog rtdists rtdists RT dsitributions in R rte-antares-rpackage antaDraft rte-antares-rpackage antaresDev rte-antares-rpackage antaresEditObject rte-antares-rpackage antaresFlowbased rte-antares-rpackage antaresMaps rte-antares-rpackage antaresProcessing Processes the input and output data rte-antares-rpackage antaresRead Import, manipulate and explore the results of an Antares simulation rte-antares-rpackage antaresViz Antares Visualizations rte-antares-rpackage antaresWaterValues rte-antares-rpackage antaresWeeklyMargin rte-antares-rpackage antaresXpansion rte-antares-rpackage bpN rte-antares-rpackage flowBasedClustering rte-antares-rpackage leaflet.minicharts rte-antares-rpackage manipulateWidget Add More Interactivity to htmlWidgets rte-antares-rpackage testTravisForR rtelmore RDSTK R wrapper for the Data Science Toolkit rtelmore ballr An R API for basketball-reference.com rtelmore horsebetr KY Derby Bets rtlemos rcage TBD rtlemos rcdistr Probabilistic programming with R reference classes rtlemos rcrandom pseudo-random number generators for random variables and vectors rtlemos rcskeleton Build the skeleton for a new repo rtlemos rcsurplus R package for surplus production models rtlemos rcsurplus1d Surplus production models for your fisheries data rtlemos rcvirtual Virtual references classes for statistical modeling rtooker CRUKBrand rtrangucci stanRegression rtrigg spatialnetwork Creating spatial networks over water in R rtrigg spatialnetworkagents Some code for agents to move around a spatial network. rtrvale koiplot Scatterplots that look like paintings rtsho preprocessr rturn BMI-826-Project BMI 826 R Package rturn parseTweetFiles Processing code in R package format ruaridhw r-AMPL Provides convenience wrappers around the Python package amplpy using reticulate rubak RcmdrPlugin.plotByGroup R Commander Plug-in for using a few lattice graphics to plot by group rubak spatstatsphere R package for point pattern data on sphere rubenarslan codebook Cook rmarkdown codebooks from metadata on R data frames rubenarslan formr The accompanying R package for the survey framework formr (see https://github.com/rubenarslan/formr.org and https://formr.org) rubenbanuelos gameDesignTools Small repo with random stuff useful to design games rubenfcasal npsp npsp: Nonparametric Spatial Statistics rudazhan nyctaxi R package for analyzing TLC trip records. rudeboybert SpatialEpi Methods and Data for Spatial Epidemiology rudeboybert SpatialEpi2 Overhaul to SpatialEpi rudeboybert fivethirtyeight R package of data and code behind the stories and interactives at FiveThirtyEight rudeboybert okcupiddata R Package of Cleaned OkCupid Data rudeboybert resampledata R package of data sets from "Mathematical Statistics with Resampling in R" rugbel p2model Maximum likelihood estimation of p2 models rugeer https-github.com-hfrick-trackeR trackeR rugeer trackerR_robin ruimaciel mabc Maciel's Artificial Bee Colony implementation for R ruinoto imgtr Japanese web translation from local image files ruiqili2 bvn An R package for simulating and visualizing of BVN ruiyiz RRmisc Ruiyi's R package with miscellaneous utilities ruizhima ABCV Implement hv cross validation in Racine (2000), JoE. Econ 722 ps6 ruizhima AICC Package for corrected AIC, Econ 722 ps 5 rukmal DerivativeVisualizer Package to create simple profit/loss payout charts for derivative trades in R rumroses12 invector R package rundel RcppGP Tools for efficiently working with Gaussian Processes in R / C++ rundel ghclass Tools for managing classroom organizations rundel isoscatR R package for smoothed and continuous assignment testing (SCAT) of genetic samples rundel libgeos rundel libproj rundel sfs sfs classes and support for geometry data rundel sunshine R package for sun position related quantities (e.g. sunrise and sunset times) rundel timezone A small R package for finding timezone names from geographic coordinates runehaubo lmerTest Tests in Linear Mixed Effects Models runehaubo lmerTestR lmerTest Revised ruoyzhang FunctionsForTeamCyCy FunctionsForTeamCyCy ruoyzhang RProgrammingAssignment Homework russHyde ee.marray.functions Various functions for microarray analysis russHyde exemplr russHyde flogr russellhz gcamchartr rustr rsegex R package - Rust Regex in R rustr rustinr Rust and R Integration rustyoldrake WatsonR An R Package to process unstructured data with IBM Watson Developer Cloud Services rustyoldrake WatsonR-Package rvalavi blockCV The blockCV package creates spatially or environmentally separated training and testing folds for cross-validation to provide a robust error estimation in spatially structured environments. rvalieris signeR rvidgen clr rvidgen newCLR rvladimiro GitPackage Testing adding R packages to Github rvladimiro dafR Data Analysis Framework in R rvladimiro ognd.plot rvladimiro ognd.tools rvlenth emmeans Estimated marginal means rvlenth estimability R package for determining estimability of linear functions in regression models rvlenth lsmeans R package for least-squares means (aka predicted marginal means) rvlenth rsm R package for response-surface methodology rvlenth unrepx Analysis of unreplicated experiments rwash surveys R package for loading and analyzing survey data rwehrens BatchCorrMetabolomics Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, 2016. rwehrens StatsDemo Demo package for a Very Short Course on statistics rwehrens alsace ALS for Automatic Chemical Exploration of mixtures rwehrens metaMS data processing for MS-based metabolomics rweyant googleflights An R wrapper for Google Flights QPX Express API rweyant rmd2wp Uploads RMarkdown documents directly to a Wordpress blog rweyant spotifyr An R wrapper for Spotify's API rwildermuth FayLabExamples ryamada22 Ronlyryamada ryamada22 Rryamada ryamada22 SelfDecABP ryamada22 documents ryamada22 mwaytable ryamada22 ry1 ryamada22 ry2 ryamada22 ry3 ryamada22 ry4 ryamada22 ry5 ryamada22 ry6 ryamada22 spinSpherization ryan-quigley camcos2017 camcos2017 ryankinzer PITviewr ryankinzer cuyem Draft package containing functions to estimate Ad Hoc Supplementation Monitoring and Evaluation Workgroup performance measures. Package includes uncertainty estimators for each performance measure and example datasets. ryanraaum bioanthdatasets A collection of example datasets from biological anthropology ryanrbart RHESSysIOinR A package containing functions for running RHESSys from R ryanrbart rhessysR A package containing functions for running RHESSys from R ryanrsun GBJ Generalized Berk-Jones package ryanrsun GEint GEint package ryanrsun LungCancerAssoc ryanscharf goatcounter ryanscharf printtools3d ryanshiroma BayesianBlocks An algorithm for optimal piecewise segmentation of non-homogeneous Poisson process data ryantimpe ipfitr A tool for using iterative proportion fitting within the 'tidyverse' framework. Impute crosshatch values in a large data frame, tying to multiple target data frames and boundary conditions. ryantimpe rspivot RStudio addin to view data frames as pivot tables. View data as values, growth rates, and shares. ryantsullivan tidyTMDb ryanvoyack financialStatementPlot An R package containing functions and a shiny app ryapric ZillowTools An R Package for Working With Public Housing Data from Zillow ryentes careless rykim2 ESSCDocProj ryninho mekko Marimekko and bar mekko graphics in R ryoogata myPackage rystanley genepopedit Simple and flexible manipulation of genomic data. rywhale kiwisR Allows users to query KiWIS databases for hydrometric information. Currently supports three default hubs and also allows for non-default hubs to be used. rywhale swmcR A wrapper for querying the Ontario Surface Water Monitoring Centre's Hydrometric database. rz1988 deeplearning A deep neural network package for R rz1988 test s-baumann FixedPoint Fixed Point acceleration algorithms in R s-cosseddu RMD General-purpose R functions (primarily designed to analyse outcomes of computer simulations) s-fleck bivu The Bibliothek von Unten R Package s-fleck colt CLI color themes for R s-fleck hammr s-fleck isit s-fleck tatoo Table tools: tools for combining data frames and exporting them to xlsx s-fleck testthis s-u Acinonyx iPlots eXtreme - interactive graphics for R s-u Cairo R graphics device using cairo graphics library for creating high-quality output s-u FastRWeb Fast Interactive Framework for Web Scripting Using R s-u OpenCL Interface allowing R to use OpenCL s-u PKI Public Key Infrastucture for R based on the X.509 standard s-u RCassandra Direct interface for accessing Cassandra databases from R s-u RJDBC R interface to databases using JDBC s-u RLucene R/Lucene interface (very rudimentary so far) s-u RSclient Rserve client for R s-u Rserve Fast, flexible and powerful server providing access to R from many languages and systems s-u audio Audio Interface for R s-u background R package providing safe callbacks from background tasks into a running R session s-u base64enc R tools for base64 encoding s-u bencoding R package to handle Bencoding s-u emdist Earth Mover's Distance implementation for R s-u fastmatch Fast hashing functions and replacement of match() s-u fastshp R package providing fast routines for working with large ESRI shapefiles (.shp) in R s-u fasttime Fast utility for date/time parsing and conversion in R s-u hbase-old R interface to HBase s-u hdfsc HDFS connections in R s-u hmr High-performance Hadoop Map/Reduce R interface based on iotools s-u iotools High-performance I/O tools to run distributed R jobs seamlessly on Hadoop and handle chunk-wise data processing s-u jpeg Read and write JPEG images in R s-u krb5 Simple Kerberos 5 binding for R s-u mindex Memory-mapped, indexed files in R s-u morton R package for converting to/from Morton code (2D Z-order curve) and associated tools s-u multicore Parallel processing of R code on machines with multiple cores or CPUs s-u pcurve Principal curve analysis s-u png Read, write PNG images in R s-u proj4 A simple R interface to the PROJ.4 cartographic projections library s-u rJava R to Java interface s-u rcgal R interface to a (small) subset of CGAL s-u rcleaflet Interactive maps in RCloud based on the Leaflet package s-u rediscc Redis client for R using C API s-u roctopus High performance in-memory cluster computing using R over Hadoop s-u rpython R package to embed Python which supports reference sharing both ways s-u snippets Code snippets for R, mostly visualization-related s-u tiff Read and write TIFF images in R s-u ulog Facititate logging into ulog or syslog daemons from R s-u unixtools R interface to some system-level tools on unix and related helper functions. s-u uuid R package for handling UUIDs (based on libuuid) s-u zmqc 0MQ-based connections for R s1437643 damR No description or website provided. s3886592 test_push s6juncheng ggpval Add statistical test or annotation to your ggplot2 plots sa-ccr SACCR R package implementing the SA-CCR Basel III Regulation sa-ccr Trading Trading R Package sa-lee moimix R package for estimating MOI for SNV data sa-lee plyranges A grammar of genomic data manipulation sa-lee starmie starmie: plotting and inference for population structure models :star2: saagie rstudio-saagie-addin RStudio addin to interact with the Saagie Platform saberbouabid RYoutube saberbouabid cplm saberbouabid ryoutube saberry Fun-R-Palettes A collection of fun palettes to use in R. saberry cortisolR Analyzing cortisol data. saberry qualtricsR Easy Qualtrics REST API calls through R. sabush designGLMM An R package for finding efficient designs with count responses, categorical factors and blocks sacamano se-immigration-data R data package containing monthly immigration data from the Swedish Migration Agency website sachserf badval Reproducible data manipulation sachserf chronobiology R-package that contains several functions to get additional information on POSIXct objects. sachserf datawoman There is no data w/o manipulation... sachserf framework A framework for project structures in R sachserf ggsf sachserf logitmp R-package that contains a function for logistic model performance (logitmp) sachserf repres Support Reproducible Research sachsmc cosinor R package for estimation and prediction of the cosinor model for periodic data sachsmc gginteractive A Grammar of Interactive Graphics sachsmc ggkm Compute and display Kaplan-Meier Curves with ggplot2 sachsmc gridSVG My version of gridSVG modified to work on shinyapps.io sachsmc plotROC Interactive ROC plots with ggplot + d3.js. sachsmc predcurver sachsmc pseval Methods for Evaluting Principal Surrogates of Treatment Response sachsmc rclinicaltrials An interface to the clinicaltrials.gov API sachsmc rreporttools R package to perform common reporting tasks such as querying databases, summing with subtotals, and writing to Excel sachsmc stackrdown Create stack.js presentations using rmarkdown sachsmc straweib Stratified weibull regression allowing for interval censoring and case weights sachsmc testassay Assay validation in a hypothesis testing framework sachsmc tufterhandout Output formats for Tufte-style handouts in pdf and html for Rmarkdown saeidamiri1 mlgwsa Information Theoretic Approach for Genome Wide Association Study of Parkinson's Disease saemirogg swedr saeyslab FlowSOM Using self-organizing maps for visualization and interpretation of cytometry data saeyslab triwise An R package to analyze and visualize gene expression differences in three biological conditions saezlab BraDiPluS BraDiPluS (Braille Display Plugs Data Analysis) is an R package to process and analyse data produced using the microfluidic platform for functional drug screening of patient biopsies developed in collaboration with Merten group (EMBL). saezlab CNORdt an extension of CellNOptR that allows to train a Boolean model agains time-courses of data. saezlab CNORfeeder CellNOptR add-on that permits to extend a network with links derived from literature saezlab CNORfuzzy CellNOptR extension using constrained fuzzy logic saezlab CellNOptR Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data. saezlab SLAPenrich Sample Level Analysis of Pathway Alteration Enrichments saezlab progeny R package for Pathway RespOnsive GENe activity inference sagargupta10 credit_metrics This repo includes R code to analyze the credit based metrics at JT sagiegurari scriptexec Run complex native scripts with a single command, similar to system commands. sagraciano R-creative Entorno gráfico de distribuciones empíricas sahbantariq airlines sahbantariq promethee promethee sahildshah1 gene-surrounder Network-based identification of disease genes in expression data: the GeneSurrounder method sahilseth cghub An Interface enabling easy access to CGHub sahilseth flowr Robust and efficient workflows using a simple language agnostic approach sahilseth funr Simple Utility providing Shell Access to all R Functions sahilseth params Simplify parameters sahilseth readthedocs Create readthedocs website for a R package sahilseth tcga.archiver Creating metadata for TCGA lowpass data sahirbhatnagar bouchard sahirbhatnagar casebase sahirbhatnagar eclust sahirbhatnagar eclustProject sahirbhatnagar funshim sahirbhatnagar ggmix sahirbhatnagar manhattan No description or website provided. sahirbhatnagar manhattanly sahirbhatnagar penfam sahirbhatnagar sail sahirbhatnagar shim sahrendipity sarar First package for add_plus sailthru tidyjson Tools for using dplyr with JSON data sailuh topicflowr A package to bin corpus monthly and create time flow through binned topics probability distribution similarity. sainathadapa exploreNestedLists RStudio addin to explore nested lists sainathadapa personalFinanceR Functions for Personal Finance (India centric) sainathadapa stubthat Stubbing framework for R sairaamv weatherData saitejar AnDE R package for AODE Machine Learning Algorithm sajjadfouladvand PhenoPro7 sajjadfouladvand TestP2 sakaisatosi ModelSelect 自動的にモデル選択をするためのRのパッケージ sakaisatosi awk sakaisatosi mecab sakoehler7 eesim Environmental epidemiology simulations sakrejda Rux R interface package for test Lux library. sakrejda dodo An R package to ease the construction of Integral Projection Models (IPM's) sakrejda simachine Basic statistical simulation framework in R relying only on base R and environments. salbeke rKIN Estimate Niche space using Kernel Density Estimates sales-lab graphite GRAPH Interaction from pathway Topological Environment salherm1 saludoR Test package with a function to greet salimk Rcrawler An R web crawler and scraper salmuz ECeMsm Evaluation of the Cost-Effectiveness in the Markov Multiple-State Models salmuz WAHEco Application Web for Health Economics Decision Making salmuz WeMEco Application Web for Medico-Economics Decision Making salvatorelaspata google-motion-charts-with-r Automatically exported from code.google.com/p/google-motion-charts-with-r salvatorelaspata minesweepergame sam-bassett CompGO An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation sam217pa gbc-gcbiasr Wraps analysis of conversion tracts of Acinetobacter samWieczorek DAPAR Tools for the Differential Analysis of Proteins Abundance with R samWieczorek DAPARdata samWieczorek Prostar Graphical User Interface for the R-package DAPAR samWieczorek ProtXploR samanthaleejensen uniqueperm samarafk MLML2R Consistent simultaneous estimates of DNA methylation and hydroxymethylation using R sambaala boostedBoxplot Data visualization using customizable Boxplots in R sambaala linkspotter Machine Learning toolkit for dataset correlations analysis and visualization sambofra bnstruct R package for Bayesian Network Structure Learning sambrilleman rstanjm Bayesian joint longitudinal and time-to-event models via Stan sambrilleman simjm Simulate Joint Longitudinal and Survival Data sambrilleman simsurv Simulate Survival Data samclifford confint.gam samclifford mgcv.helper Helper functions for using mgcv samdchamberlain WetlandComparison samdchamberlain disturbance sameermanek mmisc samhinshaw guelph A factor management package samhinshaw labnotebook R package for common functions I'll be using in my lab notebook! samhuairen myGWAS the package is a collection of GWAS functions to doing GWAS in R samil4205 getNavermap samirtouzani GBMbaseline R package for generating baseline models of electric load using Gradient Boosting Machine algorithm sammo3182 addinPoliSci addins for personal quantitative research sammo3182 interplot interplot: plotting interactive effects samorso cosplines samp891216 ClaseSeriesdeTiempo Proyecto para la clase de series de tiempo sampoll rhdf5client Functionality for reading data from h5serv server samuel-rosa autofun Automatic Generation of R Functions samuel-rosa biotrigo samuel-rosa febr Fe-BR: Repositório Brasileiro de Dados de Ferro do Solo samuel-rosa febr-package febr: Repositório Brasileiro Livre para Dados Abertos do Solo samuel-rosa manoeli An R-package to pay homage to my friend Manoeli samuel-rosa pedometrics Pedometric Tools and Techniques samuel-rosa spsann Optimization of sample configurations using spatial simulated annealing samuelVJrobinson CPForage CPForage samuelVJrobinson MCMCglmmExtras MCMCglmmExtras samuelbosch marinespeed R code for working with the Marine SPEcies and Environmetal Data (MarineSPEED.org) dataset samuelbosch rf4sdm Tuning random forests for transferable species distribution modeling samuelbosch sdmbenchmark Benchmark data sets for species distribution modeling samuelbosch sdmpredictors A compilation of environmental data for species distribution modelling samuelfranssens rlibrary personal package samuelkaminsky SKTools R Package with some functions that I've found useful samuelpena qEfficientFrontier R package for QlikView that takes in any portfolio of stocks return and optimizes it using the Efficient Frontier samuelpena qKMeansCluster R Package for QlikView to do a K Means Cluster samuelpena qlikexamples samyag1 StrmAnlyzeR sandan tutoRIal R stuff sandcat024 hmwr himawari sandeepvm pennAppDemo sandersone twd1 sanderszach EMD Contains Code for EMD library sandraTL PADIGM sandraTL PathQuant sandraTL PathQuantPadigm sandraTL Ressources sandrews5 FlowSorted.CordBlood.450k Illumina 450k data on sorted cord blood cells sandroklippel fishassess Old FishAssess add-on package in R language sandyburden ExceedSets Exceedance Sets Code sanealytics recommenderlabrats Some recommendation algorithms and research sangeeuw factorAnalytics_Avinash sanglee EasyTCGA An R package for easy batch downloading of TCGA data from FireBrowse sanjaygovindan ether sanketrane SRBcell A package for B cell modelling sankeydan Goaty sankeydan collEcol Plotting and Analysing Collective Animal Behaviour Data sanlopez CreatingRPackages This is a test repository to create my own R packages sanmai-NL MScAnalysis An R package that performs the analysis for my MSc thesis sanmai-NL feat Turn XML trees into a design matrix with linguistic surface (word n-grams) and structural features of arbitrary objects sanmai-NL sanmai-NL sanoke hetviz Treatment Effect Heterogeneity visualization using R sansbacon ffopt R library for fantasy football optimization sansbacon rnfl R library for analyzing NFL statistics santiago1234 corrcodon codon enrichment correlation with RNA expression santiago1234 corrcodon2 santiagosnchez rBt Handy functions for dealing with BEAST trees in R santiallende PsychLab A set of useful functions for psych labs implementing mixed effects models. santiallende caanPackage Useful functions for the CAAN Laboratory. santoscs deemd Denoising with Ensemble Empirical Mode Decomposition santoscs deemdat Denoising with Ensemble Empirical Mode Decomposition and Adaptive Thresholding santoscs mecnost Modelos estruturais de componentes não observados para séries temporais santoscs niemd Núcelo da Inflação como Decomposição de Modo Empírico (EMD) santoscs nimcno Núcleo da Inflação com Modelo de Componentes Não Observados santoscs pimfc Código R e dados para reproduzir os resultados do artigo "Prevendo a inflação no Brasil com grande conjunto de dados: uma aplicação do modelo de fatores comuns" santoscs prevendo.inflacao.fatores.comuns Código R e dados para reproduzir os resultados do artigo "Prevendo a Inflação no Brasil com grande conjunto de dados: uma aplicação do modelo de fatores comuns" santoscs ssimf Statistical significance for IMF from EEMD santosneto RBS Reparameterized Birnbaum-Saunders regression models santosneto rbsmodels Reparameterized Birnbaum-Saunders regression models sanyosa pow sapfluxnet sapfluxnetQC1 R package with functions related to sapfluxnet project sapfluxnet sapfluxnetQC2 saptarsi-chowdhury Building-an-R-Package FARS data package for Coursera Building R Packages course saraemoore SLScreenExtra A collection of additional screening algorithms for SuperLearner saraemoore SLWeightedScreen A collection of observation weight-respecting screening algorithms for SuperLearner sarahcn impplotr Small R package to summarize metrics from University of Michigan Imputation Server sarahsupp growR functions to map data to Geographic Regions of the World sarahvanhala nomscheck Check NOMs H-data saraihs2 GOsorting saralinker GONetwork saralinker brainImageR A Framework for visualizing gene set enrichment throughout neurodevelopment sararain SmoothCure sarbal EGAD Gene network analysis sarotter BigginsTime sartorlab chipenrich.data Experimental version of data package associated with chipenrich sartorlab methylSig R package for whole genome DNA methylation analysis. sarunasmerkliopas rotils Package containing utility functions that I use for data processing. sarupurisailalith RStudioAddins RStudio Addins for statistical model diagnostics sarupurisailalith commonUtilAddins R Studio Addins for common data frame operations sarupurisailalith statModelAddins R Studio Addins for statistical modelling and model diagnostics saschagobel legislatoR Political, sociodemographic, and Wikipedia related data on political elites saschagobel test saschahsp RTutorExpertReviewsWineDemand Bachelor Thesis RTutor Problem Set saskiaotto INDperform INDperform is an R package for evaluating ecological state indicators and assessing the ecological status based on a suite of indicators. sassoftware R-swat The SAS Scripting Wrapper for Analytics Transfer (SWAT) package is the R client to SAS Cloud Analytic Services (CAS). It allows users to execute CAS actions and process the results all from R. satherley BinarySimilarity Functions for binary similarity sathish-deevi Roads-Package A set of helper functions to take advantage of US Roadways data--including the shapes for major roads. sathish-deevi modes-Package An R package that calculates various mode and modal measures for complex distributions and big data. sathishsrinivasank pinerrordetector satijalab seurat R toolkit for single cell genomics satyausc MDSimulation satyausc Seq2Logo satyausc methylDNAshapeHTmethod satyausc rPythonTrial saudiwin arpshiny saudiwin bawsala saudiwin bayes_measure saudiwin idealstan idealstan offers Bayesian IRT models for legislature rollcall voting data that take into account absences and abstentions. In addition, standard IRT and dynamic hierarchical IRT models are included. All models are estimated in the Stan framework. saudiwin twofe_sim saundersk1 ClusterMax Package for clustering station data using extremal coefficient - written by Philippe Naveau saundersk1 DataProcessing No description or website provided. saurabhJaju explore- R Package for some basic exploratory analysis saurabhJaju my-python-codes sauravkaushik8 SamplePackage saurfang SparkRext SparkR extension for dplyr saurfang jsdiff jsdiff HTML Widget for R saurfang pkgdown.example saurfang reticulate.df Reticulate DataFrame Conversion via Apache Arrow saurfang roxyPackage Workflow utility to maintain R packages saurfang rwebhdfs R Package for WebHDFS REST API saurfang shinyAceCodeInput Interactive Shiny via direct R programming saurfang shinyCartogram d3-cartogram Binding for Shiny saushe RED R package to perform exploratory data analysis savvito courseraMasterR this is my coursera building R packages project sawpena-valgen demoprosper sawpena-valgen swapnaprospervue sawyerda bookdown sazpark fermicatsR A package containing catalogs from the Fermi Large Area Telescope. sazpark fermicatsR.git A package containing catalogs from the Fermi Large Area Telescope. sba1 gitunify sba1 mgsa-bioc Mirror of the mgsa Bioconductor package with full history in the master branch. Content of https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa in the bioconductor branch. sbbrandt xgbAnalysis Machine-Learning analysis of large data sets from molecular dynamics simulation sbegueria SPEI An R package for computing the Standardized Precipitation-Evapotranspiration Index (SPEI), Penman-Monteith and other reference evapotranspiration, SPI, etc. sbegueria disdRo An R package for working with disdrometric data sbfnk R2C3 Create C3 graphics with R sbfnk RBi R package for Bayesian inference with state-space models using LibBi. sbfnk RBi.helpers Helper functions for inference with LibBi. Building on the 'rbi' library. sbfnk dynmod Stuff for modelling infectious disease dynamics sbfnk fitR Functions for model fitting and inference sbfnk flusurvey code for flusurvey analysis sbfnk nbbpchainsizes Code to compare different models for branching processes with negative binomial offspring distribution sbfnk socialmixr R package for deriving social mixing matrices from survey data. sbg sevenbridges-r Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R sbha weatherr sbhattacharya3 IntramiRExploreR sbihorel neldermead R port of the Scilab neldermead module sbihorel optimbase R port of the Scilab optimbase module sbihorel optimsimplex R port of the Scilab optimsimplex module sbihorel rclipboard clipboard.js for R/Shiny Applications sbihorel scaRabee Optimization toolkit for pharmacometric models sbiminserm mlcodage mlcodage is an R package for medical text annotation, based on machine learning. sbngross pckg-skel-test sbohora sAUC AUC analysis with discrete covariates and a semi-parametric estimation sborms hello-world test repository sborms sentometrics An integrated framework for textual sentiment time series aggregation and prediction sborstein AnnotationBustR AnnotationBustR sboysel africa Administrative boundary data for African continent packaged for R sboysel afrobarometer Automated loading and merging of Afrobarometer Survey data into R sboysel boston An R spatial data package for election wards and precincts for the City of Boston sboysel boysel A collection of miscellaneous R functions sboysel fredr Interact with the FRED API in the R workspace sboysel joshuaproject Data from the Joshua Project as R data frames sboysel murdock R package containing Murdock 's (1959; 1967) Ethnographic Atlas data for African Continent sboysel nycboroughs An R package containing spatial boundary data for the five boroughs of New York City sboysel nyccollisions An R package containing spatial data on New York City motor vehicle collisions during July 2015 sboysel spitcastr An R client for the Spitcast Surf Forecast API sboysel tides-shiny A Shiny app to visualize tidal predictions sbpatel2009 NGS-Panel-Analyzer R code and supporting files for Shiny App sbstatgen GKnowMTest sbujarski SpPack Spencer's Personal Functions scarpino binequality scarpino multiDimBio R package multiDimBio scfurl probedeeper Making the Analysis of Microarray Data More Efficient schaarschmidt mixADA GUI for mixture model fit schaarschmidt mratios Share new versions of the mratios package schaarschmidt statintcov Multiple treatment comparisons in presence of treatment-covariate-interactions schafik LGA-Survey-Data schafik R schafik dospert DOSPERT R package for data cleaning + analysis schafik salah r package for convenience functions schalkdaniel StockSC pull and plot stock data schalkdaniel liftplot Create liftplots schalkwyk wateRmelon Illumina 450 and EPIC methylation array normalization and metrics schantepie IBMphyloepis IBM with epistasis processes which evolve along a phylogenetic tree schaugf CREoLE Consensus Representation Estimation of Lineage Expression for Single-Cell RNA-seq Analysis schaugf CREoLE2 Redesign of the CREoLE algorithm schaugf DiffMap Custom implementation of the diffusion mapping dimensional reduction algorithm schaugf creole The Consensus Representation Estimation of Lineage Expression (CREoLE) algorithm is designed to identify embedded lineage structure in single-cell genomic data and calculate lineage-specific pseudo-temporal trends of gene expression schaugf pathDisco Pathway Discordance Analysis for Single-Cell RNA-seq scheidan SWMMR Modify inputs and read SWMM outputs from R scheidan WaMaSim Water Management Simulator scheike timereg timereg R package, survival analysis methods scheike timereg.git timereg R package, survival analysis methods schemaanalyst directedRandom-R-pkg schemaanalyst dominoR-pkg schifferl BiocGenerics schifferl LagSelectionBias Exploration of Lag Selection Bias Through Publicly Available Data schifferl assignment2 schifferl devtoo Tools for Package Development Too schifferl xbase schiffner EMnet Training penalized mixtures of experts by the EM algorithm schiffner biVar Bias-Variance Decomposition of the Misclassification Rate schiffner locClass Collection of local classification methods schiffner mobKriging schiffner pmoe Penalized Mixtures of Experts schildjs ods4lda Outcome dependent sampling for longitudinal data analysis schlemmge FGpackageR R package for creation of FASTGenomics data packages schliebs rforceone R Force One schliebs voteR R package for electoral research schloerke Rhipe_dummy A dummy package that is named RHIPE, but is really a 'hello world' package. This allows travis-ci to believe RHIPE is installed. schloerke autocog schloerke autocogs schloerke cranvasOLD Qt interface for the new canvas schloerke dubh_server schloerke geozoo high dimensional geometric library for R schloerke gqlr R GraphQL Implementation schloerke graphqlr GraphQL implementation in R schloerke gsoc-ggduo-test small R package to answer the test question for GSoC 2016 schloerke stat695data Data for Stat 695 Large Data course schloerke test schloerke travisDrat schmettow LNB R package dealing with the (zero-truncated) logit-normal binomial distribution schmettow Measuring-Usability schmettow asymptote provides functions and formulas for exponential learning curves schmettow bayr r package for unified reporting of Bayesian regression results schmettow betaplot standard plots for linear models schmettow mascutils collected utilities schmidtfederico glmwgen schmolze EMDomics-devel BioC EMDomics schmolze ega Error Grid Analysis schmolze emd Earth Mover's Distance for Differential Expression Analysis of Heterogenous Data schmolze saps R package for SAPS schmolze saps-devel BioC SAPS R package - devel schneebergerlab findGSE findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model. schnellp credsubs R credsubs package for producing credible subsets schochastics Rokemon Pokemon themed R package schochastics netrankr An R package for network centrality scholbeck heightcheckR my first r package for a data science class schrob040 coastR schul016 MostRecentSBP schurerlab LINCSDataPortal schurerlab LINCSanalytics schw4b emov An R CRAN package for fixation and saccade detection in eye movement recordings. schw4b mdm Multiregression dynamic models (MDM): An R package for directed brain network analysis. schw4b multdyn multdyn: Multiregression Dynamic Models for directed dynamic functional brain network analysis. schwarja209 HurricaneWindGeom schwarja209 rfars sample package for Building R Packages course on Coursera scientific-computing-solutions InformativeCensoring Multiple Imputation for Informative Censoring scientific-computing-solutions RMST Functions for calculating the Restricted Mean Survival Time (RMST) scientific-computing-solutions assurance Assurance calculations for clinical trials scientific-computing-solutions badminton R package for simulation of continuous time Markov chains scientific-computing-solutions dejaVu Methods for multiple imputation and analysis of recurrent events missing data scientific-computing-solutions eventPrediction Event Prediction in Clinical Trials with Time-to-Event Outcomes scientific-computing-solutions eventTools Extension to the eventPrediction package for N-piecewise Weibull and lagtimes scientific-computing-solutions sibyl The package fits parametric models to time-to-event data and extrapolates these curves to larger survival times. sciserver SciScript-R R libraries for SciScript, Jupyter Notebooks sciserver SciServer-Notices sciserver SciWidget sckott SSOAP sckott XMLSchema sckott analogsea Digital Ocean R client sckott cachecall sckott canadiana Canadiana R client sckott cowsay cowsay w/ more animals, in R sckott dapper OPeNDAP client sckott dappr OPeNDAP client sckott datelife_sandbox datelife code sckott dendro sckott discgolf Discourse API R client sckott doc sckott dottimes sckott egnar European Nucleotide Archive R client sckott extractr Extract text from pdfs using various web and local APIs sckott fauxpas fauxpas does http errors sckott fluxy sckott foobar2 sckott ftp ftp for R sckott geopeasy sckott git2rtest2 sckott helloworld sckott httpcode http code investigation sckott httping Ping urls to time requests sckott httsnap http DSL sckott inir ini/cfg file parser sckott instoff sckott jqr jq inspired json parsing sckott mregions MarineRegions R client sckott nameparser R port of Ruby's biodiversity scientific name parser sckott nonoyes sckott oai OAI-PMH client sckott occlist No description or website provided. sckott openadds Openaddresses R client sckott rebuke Library for accessing the App.net API from R. sckott request http requests DSL for R sckott resteasy sckott rgbif_scott some fixes to rgbif sckott rjsonapi jsonapi R client sckott rphylopic Get silhouettes of organisms from Phylopic. sckott rtaxamatch taxamatch implementation in R sckott rwdpa No description or website provided. sckott rwikispeedia R interface to Wikispeedia sckott sacbox Library of R functions from me and others sckott scottnewsite sckott scrubr clean occurrence records sckott spenv add environmental data to spatial data sckott splister match species list against reference list sckott spplist No description or website provided. sckott sxslt sckott testme sckott todo sckott tp sckott travis-restarts sckott treeshape Code/data for the treeshape manuscript sckott usgs R interface to USGS APIs sckott webdisr scottcame geocode R package that interfaces to freely available geocoders scottisloud imessager send imessages from R scottkosty qmutest R package for testing U-shaped regression functions using critical bandwidth scottriding y2pareto Some convenience functions for Y2 data preparation. scottstankey sscwpb scottzijiezhang m6Amonster tool sets to analyze high throughput data for RNA modifications scrcss pfmc_pkg IRLS-EM algorithm for the penalized finite-mixture Cox PH model scrcss319 BeSS Best Subset Selection in Linear, Logistic and CoxPH Models scrim-network Stilt-Rpkge Source code for the stilt package in R scristia CNPBayes Bayesian mixture model for estimating copy number polymorphisms scrm scrm-r scrm, packaged for convenient usage in R scrogster CatchCurve linear models for catch-curve analysis scrogster rickrollR rickrolling in R sctyner JSOmetaN sctyner dplyr050 I need an older version of dplyr for some of its unexported functions and I'm too lazy to figure out how to Rcpp them myself. sctyner geomnet Examples and data for geom_net sctyner ggCompNet sctyner netvizinf R package for my visual inference for networks research scumdogsteev mlsjunkgen MLS Junk Generator R Package (RNG) scumdogsteev phonenumber phonenumber R package scworland-usgs demoPackage scworland-usgs timepls R package for doing partial least squares regression on time series data sdaza acsr R package to manage ACS files sdaza lifeTables sdaza sampler R functions for sampling design sdaza sdazar My functions in R sdbecker shakerr Analysis of earthquake data. sdcTools checkTauArgus sdcTools sdcMicro sdcMicro sdchandra CNAclinic sddchina NTSMDA sdeboudt packa packa and its companion packb illustrate the different dependency relationships between R packages sdeboudt packb packb and its companion packa illustrate the different dependency relationships between R packages sdeboudt reactr Showcase R functionality via OpenCPU in the ReactJS Framework sdeboudt sdeboudt.ocpu.io OpenCPU Packages sdiehl28 FARS-R-Package Coursera R Packages Course sdllc BERTModule Support functions for BERT sdorius Data-Science sdparsons splithalf splithalf sdray ade4 Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences sdray adegraphics An S4 Lattice-Based Package for the Representation of Multivariate Data sdray adespatial Multivariate Multiscale Spatial Analysis sdumble1 RCCRP sdverkoelen RBM A simple Restricted Boltzmann Machine implementation in R sdwfrost mevr Molecular epidemiology of viruses in R sdwfrost phylowidget An R htmlwidgets package of phylotree.js sdwfrost popseq Population Analysis of Deep Sequencing Data seaaan easieR Functions to make R easier seaaan gghlab Hladik lab ggplot2 helpers and defaults seaaan plateR Tools to make it easy to work with microtiter plate-shaped data seaaan scaffold scaffold seaaan swarm seabbs getTBinR Import Clean Analysis Ready WHO Tuberculosis Data into R seabbs h2ohelper An R package containing utility functions to help with using the h2o package in R seabbs idmodelr Utility Functions for Infectious Disease Modelling seabbs prettypublisher R package to help in formatting R markdown documents into a publishable format seabbs tbinenglanddataclean Cleans and Munges Tuberculosis and Demographic Data for England seabbs trendsinpapers A simple R package to load, clean and analysis trends in publications - with TB modelling papers as an example sean-cho Epicopy Epicopy R package for CNV identification from methylation microarrays. sean-cho toolkit Collection of wrappers and functions for R. seananderson catchstatus R package exploring methods of assigning fishery stock status based on catch seananderson ecofolio R package for measuring ecological portfolio effects seananderson ecofoliosim Simulate from community dynamics to explore caveats and solutions to optimizing ecological portfolios seananderson ggsidekick Helper function(s) for ggplot2. [Only theme_sleek() for now.] seananderson metafolio Simulate metapopulations for portfolio optimization seananderson pbs-synopsis An R package to generate annual data-synopsis reports for Canada's pacific groundfish seananderson ramlegacy R package to download, import, convert, and cache the RAM Legacy Stock Assessment Database seananderson robustmeta R package for robust random-effect meta-regression with dependent effect sizes seananderson rrfields Robust random fields for Bayesian spatiotemporal modelling seananderson sharkbase seananderson spudr An R package for tracking and managing couch-potato investment portfolios seananderson stanhelpers Helper functions for Stan/rstan seancarmody ngramr R package to query the Google Ngram Viewer seancarmody rmapaus R package to simplify visualising Australian data seanchrismurphy Smisc Miscellaneous functions I use seanchrismurphy cleansema The cleansema package is designed to perform the initial cleaning of data collected using the SEMA smartphone application. seanchrismurphy emacalc A package to help work with ESM data seanchrismurphy twtools A package of utility functions for dealing with Twitter and tweet data seandavi BiocBrazil2014 Code and vignettes in support of the SummerX Bioconductor course in Brazil seandavi BiocGadgets seandavi BiocPkgTools Access Bioconductor repository and project metadata from within R seandavi CGC seandavi COSMIC.build57 An R data package for the COSMIC database seandavi GEOmetadb Github mirror of the GEOmetadb bioconductor package seandavi GEOquery The bridge between the NCBI Gene Expression Omnibus and Bioconductor seandavi HiCUtils seandavi Illumina27kMethylationTitration seandavi Illumina450kMethylationTitration seandavi MutationTools seandavi NewPkg seandavi Rpressa Miscellaneous R code for biological data tasks. seandavi SRAdb Git mirror of Bioconductor SRAdb package seandavi SeansStuff Small example R package to teach R package development. seandavi TARGETOsteoDataPackage seandavi TARGOS seandavi VCFWrench seandavi VCFWrenchR Basic R package for VCF reformatting (json and tab-delimited text) seandavi cRomwell Interact with the Broad Cromwell server for cloud-scale workflow execution from R seandavi dbGaPDataUse Access dbGaP study data use and download stats from R seandavi methylumi seandavi rEutils R package for accessing NCBI EUtilities seandavi teamcgc.github.io seandavi wdlRunR Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources seankross analyses seankross ari :dancers: The Automated R Instructor seankross bracketology 🏀 R data package featuring 2.8 million brackets from the 2015 NCAA Men's Basketball Tournament seankross cosmofont 🚀 Add Fonts to Your Projects Programmatically seankross frontmatter seankross halcyon seankross lego 😃 R data package featuring every Lego set from 1970 to 2015 seankross metrometrics seankross minimap 🌎 Create Tile Grid Maps seankross neocities 😺 An R Package for the Neocities API seankross p5 🎨 Draw with Data seankross thisisatest seankross toffee 🐕 Create Curly Haired Bouncy Happy Tables seankross twilio :phone: An interface to the Twilio API for R seankross usbudget 🇺🇸 R data package featuring United States federal budget data seankross warppipe Taxonomy Annotation Pipeine for Biological Sequences seantuck12 MODISTools R package – retrieving & using MODIS data from NASA's ORNL DAAC archive seanwojcik upsentiment upsentiment seasamgo optband 'surv' object confidence bands optimized by area in R seasmith AlignAssign Align the assignment operators within a highlighted area. seasmith blg A collection of functions and objects (plot colors) I use most in my blogging. seasmith ggloop Create 'ggplot2' plots in a loop. seasmith seasmith seastateinc fisheryFootprint R-package for calculating the footprint of a fishery as measured by the proportion of the SPR. sebabauer mapaecosistema sebastian-c overflow An R package to assist people answering R questions on Stack Overflow sebastianandersson AdvStatComp Package for Advanced statistical computing project sebastianandersson FMA FMA package sebastianankargren FMA FMA package sebastianbarfort mapDK R package for making maps of Denmark sebastianbarfort sblib Personal R package sebastianbarfort taxdk R package to access tax information for Danish companies sebastianduchene ClockstaR This is the home of the ClockstaR package sebastianduchene NELSI This is the repository for NELSI: Nucleotide Evolutionary rate Simulator sebastianduchene clockstarG ClockstaR code for genomic data sets sebastianduchene p4-phylogenetics sebastiansauer dummy sebastiansauer jjplot Automatically exported from code.google.com/p/jjplot sebastiansauer prada Accompagnying R package for the course "Praktische Datenanalyse" (practical data analysis) and the book "Statistik_21" sebastiansauer pradadata data sets for practical data analysis sebastiansauer test_ses sebastianschweer sastibe Useful Functions for Sebastian Schweer's Projects sebastianueckert assemblerr sebastien-villemot econboard R package for macroeconomic analysis sebastiz EndoMineR Endoscopic and Pathological data extraction for various endo-pathological data extraction sebdalgarno HGfetch R package to calculate wave exposure from fetch and wind data. Data for Haida Gwaii coastline is included. sebdalgarno haidawave R package to calculate wave exposure from fetch and wind data. Data for Laskeek Bay is included. README includes directions to download data for Haida Gwaii. sebkopf animanipulate extension of the gWidgetsManipulate package for plot animation ala mathematica sebkopf chemtools sebkopf cside Compound Specific Isotope Data Explorer sebkopf dfv Data Frame Viewer for getting started with plotting in R and specifically ggplot sebkopf dsqdp DSQ Data Processor sebkopf idp Isodat data processor sebkopf isocyclr sebkopf isoread R interface to IRMS (isotope ratio mass spectrometry) file formats typically used in stable isotope geochemistry sebkopf isorunN2O package to facilitate the reading, processing and visualization of N2O isotope data including drift correction, 17O correction and standards calibration sebkopf isotopia R toolbox for working with isotopic data (abundances, ratios, delta values, etc.). sebkopf lans2r Import and process Look@NanoSIMS data in R sebpardo myebird Analyse your personal eBird data sebschnell gsgsim Gloabal Sampling Grid simulation framework sebschub dcepucp Create a NetCDF file of urban parameters for DCEP as implemented in COSMO-CLM 5 sebschub klimageodb Tools for the Klimageographie database sebsfox fingertipsR secastroal GGUM GGUM seekme94 influence-mining To provide solution to mine influence on networks sehjk nooran Package containing functions for common data processing steps that Noorans require seifer08ms ROzone2 seifer08ms RPostGIS a R Package for manipulating data with PostGIS seifer08ms Rmaputil seifer08ms Rmarkmap seigal NERD selbouhaddani O2PLS NOTE: Obsolete!!! see the OmicsPLS repo!!! selbouhaddani OmicsPLS R package for High dimensional data analysis and integration with O2PLS! selbouhaddani PO2PLS Probabilistic O2PLS selcukorkmaz MVN An R Package for Assessing Multivariate Normality selcukorkmaz MVN2 Multivariate Normality Tests v2 seldas Dforest Decision Forest for R-package selesnow getProxy Gep free proxy IP and Port in R. selesnow rGitHub Пакет rGitHub предназначен для получения статистики по репозиториям на GitHub на языке R. selesnow rfacebookstat Загрузка статистики по рекламных кампаниям из Facebook в R. selesnow rmixpanel R клиент для работы с API Mixpanel (Загрузка данных из Mixpanel в R) selesnow rmytarget Пакет для загрузки данных из API MyTarget в R. selesnow rvkstat R клиент для работы с API Вконтакте (загрузка данных из API Вконтакте в R). selesnow ryandexdirect R клиент для работы с API Яндекса, загрузка данных из Яндекс.Директ и ЯндексюМетрики в R. selinj chromswitch An R package for detecting chromatin state switches selinj ggmin A clean, minimalist theme for ggplot2 seliv55 MIDcor_wf seliv55 RaMID seliv55 cdf2mid R-program to read CDF files containing multiple mass spectra of 13C-labeled metabolites, and write the extracted spectra in a format exchangeable with Metabilights database seliv55 midcor seliv55 tmp for learning sellorm c4game An R package to provide a simple model of the popular family game Connect 4. sellorm rsay Make R and your Mac speak selva86 InformationValue Information Value CRAN Pkg: Performance Analysis and companion functions that aid binary classification models like that of logistic regression selva86 car2 Extends capabilities of 'car' to include companion functions for logistic regression selva86 roc AUROC, IV, WOE calculation for binary classification models (logistic, discriminant etc) selva86 spellcheckr spellcheckr package selva86 woe Performance analysis functions, plot ROC curve in ggplot2, AUROC, IV, WOE calculation for binary classification models (logistic, discriminant analysis, svm etc) sem-in-r seminr Natural feeling domain-specific language for building PLS structural equation models in R semartin3 master2016 sempeelman CreatingYourRPackage sen-zhao Grace Graph-Constrained Estimation and Hypothesis Tests senadomx datasenadomx senadomx toolkitsenadomx Tools to analyse sendsay-ru sendsay-r-api-client R package for access to Sendsay API senhu FCBMA Factor collapsing with Bayesian model averaging for regression models seninp-bioinfo MetaComp Toolkit for comparative metagenomics in EDGE seninp CellA cella test sensebox oSeM-R-package This package allows to retrieve sensor data from openSenseMap in R and provides some methods for analysis. sentisci fheatmap R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and multiple … seonghobae fixsem Fix the problem of structural equation model in statistical learning perspectives seonghobae flirt.x32 the fork of R package FLIRT for Flexible item response theory modeling seonghobae k.aefa Kwangwoon Automated Exploratory Factor Analysis (k.aefa): automatically find the optimal number of factors with various exploratory factoring methods. seonghobae kaefa # kaefa kwangwoon automated exploratory factor analysis for improving research capability to identify unexplained factor structure with complexly cross-classified multilevel structured data in R environment seonjoo Lpredict seonjoo PSVDOS seonjoo sparsemediation Conducting sparse medition sephill bingo-cards seqcloud seqcloudR R functions for use in next-generation sequencing data analysis. seqcloud seqcloudr Computational biology tools seqcloud worminfo C. elegans genome and RNAi clone annotations serbinsh R-FieldSpectra R library for importing and processing field spectroscopy data collected with ASD and Spectral Evolution instruments serbinsh R-PROSPECT R functions for running PROSPECT family of leaf radiative transfer models serbinsh biocro serenasignorelli QueryWikidataR QueryWikidataR serenity-r serenity Data science in the classroom sergeitarasov ontoFAST Interactive, semi-automatic annotation of character matrices (character statements) with biological ontologies sergihervas iMKT Integrative McDonald and Kreitman test sergioluengosanchez spineSimulation Dendritic spine simulation from a probabilistic model sergioventurini GSM Gamma Shape Mixture Estimation Using R sergioventurini HWEintrinsic Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem Using R sergioventurini mederrRank Bayesian Methods for Identifying the Most Harmful Medication Errors Using R serkel myPackage ses109 RLdata ses109 cd package for cd data ses109 cora ses109 record_linkage ses109 restaurants seshadrilab COMPASSHelpers Collection of scripts for running COMPASS https://github.com/RGLab/COMPASS sestelo clustcurv An R package for determining groups of curves sestelo condsurv An R package for estimating the conditional survival function for ordered multivariate failure time data sestelo create_R_packages sestelo fwdselect An R package for selecting variables in regression models sestelo idmsurv Illness-death model in survival analysis sestelo npregfast An R package for obtaining nonparametric estimates of regression models with or without factor-by-curve interactions using local polynomial kernel smoothers or splines sestelo survidm Inference and Prediction in an Illness-Death Model setempler arr No description or website provided. setempler genetables R package to manipulate gene(tic) data tables setempler miscset R Package for miscellaneous tools setempler pca4 R package for principle component analysis setempler venntables R package to generate Venn diagram sets and plot them setgree DGGPmeta meta-analytic functions for Dias, Green, Green and Paluck (forthcoming) setgree ResultsStandardizeR Standardize Effect Sizes and Standard Errors for Meta-Analysis. seth-ament FootprintFinder sethmcg climod R package for working with climate model data seunghyunmin EAinference seunghyunmin EAlasso seunglee98 fedmatch sevenpark AvenueAPI-R Avenue API R Client seversond12 BEARscc sewardlee337 finreportr R package - Financial Data from U.S. Securities and Exchange Commission sewardlee337 zhangyimou R package - Zhang Yimou Color Palettes sf585978 speedR An R package to manage and analyze cross country results. sfcheung lstatdemo Demonstrations, usually shiny apps, for learning statistics sfeuerriegel ResearchGroupTools Collection of Custom Helper Functions sfeuerriegel SentimentAnalysis Dictionary-based sentiment analysis sfeuerriegel caret.ts Extension to "caret" package implementing time series models sfirke janitor simple tools for data cleaning in R sfirke surveymonkey sflippl tectr sflorezp modulesRReport Repositorio donde se encuentran los módulos usados en los script ui.R y server.R del proyecto R-Reports sfpacman MSc-Project sfr RStudio-Addin-Snippets RStudio add-in to copy data to clipboard, reverse slashes, insert and reformat pipes. sfr snippets-addin RStudio add-in to add some code snippets, or help with code editing. sfraundorf psycholing R Functions for Common Psycholingusitic and Cognitive Psychology Designs sfrechter courses sfrechter physplit.analysis Packaged and versioned Analysis functions for Shahar's cells sfrechter presentation sfrenk mortalgerm R package for visualizing and analyzing mrt assay data sgadberry beefnrc basic r functions associated with nutrient requirements of beef cattle sgermani WMPR WMPR Helper Functions sgibb MALDIquant Quantitative Analysis of Mass Spectrometry Data sgibb MALDIquantExamples Some examples to analyze mass spectrometry data using MALDIquant sgibb MALDIquantForeign Import/Export routines for MALDIquant sgibb MALDIquantTools Additional tools for MALDIquant sgibb benchgit Benchmarking R functions in different git branches sgibb bootstrap Simple Bootstrapping for Hierarchical Clustering sgibb cleaver Cleavage of polypeptide sequences sgibb detectability Detectability of Peptides in Mass Spectrometry Experiments sgibb dummyA A dummy R package that implements the class A sgibb flexmap Luminex flexmap 3D sgibb pushjetr An R interface to http://pushjet.io sgibb readBrukerFlexData Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series sgibb readMzXmlData Reads mass spectrometry data in mzXML format sgibb sgtools miscellaneous R functions sgibb similarity Similarity measurement for binary matrices. sgibb topdownr R-package for the analysis of Thermo Orbitrap Fusion Top-Down Proteomic Data. sgibb topdownrdata Example data for the `topdown` R package sgolchi BPD Bayesian particle discovery sgoodreau hw_tut sgorka IFS586 IFS package - creates fractals sgp667 crudshiny sgp667 todoer sgreben caretStack R package for stacking caret models sgschreiber SeedOrchard SeedOrchard sgsen jtrbasics sgsokol Deriv Symbolic differentiation sgsokol arrApply High performance variant of apply() in R sgsokol kvh read/write KVH files in R sgsokol rex2arma convertor of R code to RcppArmadillo code sgsokol rmumps Wrapper for MUMPS Library sgspurs RAPI Prototyping R shaank121 FarsProject Performs Analysis on Fatality Analysis and Reporting System(FARS) file shabbychef BWStest R package for the Baumgartner Weiss Schindler 2-sample test of equal probability distributions. shabbychef MarkowitzR statistics of the Markowitz portfolio shabbychef PDQutils PDQ Functions via Gram-Charlier, Edgeworth, and Cornish-Fisher Approximations shabbychef SPYvsSPY SPY vs SPY data package shabbychef SharpeR R package for inference on the Sharpe ratio. shabbychef fromo Fast Robust Moments in R with Rcpp shabbychef ggallin ggplot2 grab bag. shabbychef madness Multivariate Automatic Differentiation R package shabbychef mazealls R package for generating mazes. shabbychef sadists Some Additional Distributions R package shabbychef zipper R package to zip together sorted arrays shackett fluxr Streamlining analysis of metabolism shackett shackettMisc Assorted functions for plotting (ggplot2 themes) and data manipulation shackett simmer Systematic Identification of Meaningful Metabolic Enzyme Regulation shadowmoon1988 SLASSO Sequential Lasso R Package shafiqahazman96 inclassdemo shafiqahazman96 stat297datasets shahrooz1997 ProbDist This is a package for R language, that produces some R.V.s that are important in probability. shahryareiv singleverbr shaileshtripathi codecheck shaileshtripathi samExploreR shaileshtripathi ssapbm subsample analysis of pathway-base methods shamansim Vizection Shiny application for single cell transcriptomics studies data visualisation / exploration and quality control shamansim supervisedClassification An R package designed during a practical work of supervised classification. University Claude Bernard Lyon 1, Lyon, France. shambam Demo shambam cellexalvr The R package that drives CellexalVR shambam cellexalvrR The R package that drives CellexalVR shambam scgex_navigator Functions to explore and analyse single-cell gene expression data shamindras adventofcode2017 My solutions in R to the Advent of Code 2017 shamsaraj ezqsar It can easily create a MLR-QSAR model from a proper set of compounds. shanawhite-UC KEGGlincs Repository for Bioconductor package KEGGlincs shanawhite-UC KOdata Data package for LINCS L1000 knock-out experiments shanearichards crrecruit Functionality for fitting capture-recapture data to a model of recruitment shanearichards shinyrAtlantis visual tools for Atlantis shanedenecke insect.toxicology R package for basic toxicology analysis shaneporter radarchart shankarkshakya mypackage shanmdphd NonCompartCDISC NonCompart package extension to use CDISC dataset shanmdphd pknca-pil No description or website provided. shannong19 rabm shaojl7 fars Final Assignment for Building R Packages online course shaojl7 testpackage Test Package - Assignment from the Building R Packages online course shaowenguang PIN Proteome Integrity Number shapenaji cranium Generates a version-controlled repository for storing packages. shapenaji midas Turns plaintext HTML into a function call that produces the equivalent shiny objects sharlagelfand astrologer An R package of weekly horoscopes from Chani Nicholas shaughnessyar driftR Drift Correcting Water-Quality Data shaunpwilkinson aphid Analysis with Profile Hidden Markov Models shaunpwilkinson aphidTEST Analysis with profile hidden Markov models shaunpwilkinson insect Informatic Sequence Classification Trees shaunpwilkinson oldprofile depreciated - please use https://github.com/shaunpwilkinson/profile shaunpwilkinson pHMM Profile hidden Markov models for phylogenetic analysis shaunpwilkinson phylogram Dendrograms for Evolutionary Analysis shaunpwilkinson profile Profile hidden Markov models for sequence analysis shaunpwilkinson profileHMM Build and implement profile hidden Markov models shaunpwilkinson topdown Top-down reconstruction of phylogenetic trees shaunss rdnatools R package with utility functions for working with discourse networks shawnlinxl ptdash Personal Trading Dashboard shay-y googlecl shay-y repfdr Replicability Analysis for Multiple Studies of High Dimension. Development continues at : shayaa l2e shayaa smt shazhe mvst0 test mvst shearer PropCIs PropCIs is an R-package with various confidence intervals for binomial proportions inside. Confidence intervals are for single, paired and independent proportions. shearer samplesize An R package for sample size calculation (t-test and Wilcoxon test). shearer simboot An R package for the simultaneous comparison of diversity indices. shearwavesplitter EqSolvR A package for solving chemical equilibria for a given set of reactants and products in R. sheethub RTaiwan Manipulating Spatial Data of Taiwan in R sheffe fatfinger sheffien LOLA Locus Overlap Analysis: Enrichment of Genomic Ranges sheffien project.init R project initialization sheffien simpleCache Quick R caching for reproducible big data projects sheikhbarabas Shiny-App sheikhbarabas shiny shekeine stratR A package to visualize and analyse pollen stratigraphic data based on ggplot2 and data.table sheltonmath mathMD sheng-liu SeqData A data structure and four simple tools build upon it for sequencing data analysis sheng-liu SeqFrame an interface between genomic intervals spread sheet data to flow cytometry facilities in R sheng-liu SeqViz A graphical interface for multidimensional epigenome data exploration sheng-liu smt single molecule tracking sheng-liu smt-beta shenlab-sinai geneoverlap-old R package for testing and visualizing gene overlaps shenlab-sinai shen-bioinfo-R A collection of R code to perform bioinformatics. shenorrLab FIT_mouse2man shenorrLab bseqsc Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline shenorrLab csSAM Cell type-Specific Statistical Analysis of Microarray shenwei356 swr Wei Shen' R utilities shenzhongchao NBgsea 基于随机游走谱的聚类算法-R实现 sherrillmix GMTHexMapR Make pretty hex maps out of position data using Generic Mapping Tools sherrillmix ampCountR Count expected amplifications of multiple displacement amplification sherrillmix dnaplotr Plot a collection of aligned sequences sherrillmix dnar sherrillmix glmnetPlotR Produce prettier plots from glmnet and cv.glmnet sherrillmix infiniter sherrillmix levenR Simple Levenshtein alignment and distance calculation sherrillmix taxonomizr Parse NCBI taxonomy and accessions to assign taxonomy sherrillmix vipor Plot one-dimensional data using quasirandom noise and density estimates sherryxiu0305 SherryXiuCoursera shiandy bst235project Investigating link violation shiauck cummeRbund_on_RSQLite2.0 Fix cummeRbund for RSQLite 2.0 shihikoo AutoAnnotation AutoAnnotation shihikoo metaTools metaTools shihikoo pubmedTools shijbian firstPackage shilab meQTL_functions shimlab HMTree An R package for Hidden Markov tree prior shinault rater Methods to rate anything shinault shizviz Toys for learning probability shinra-dev RTop500 R data package for the Top500 lists. shinra-dev memuse An R package of utilities for benchmarking and optimization shinra-dev merkhet Timing Utilities for R shinra-dev okcpuid An R interface to the cpuid library. It's ok. shinra-dev stressR A set of stress tests for CPU, memory, and hdd, callable by R. shinwang1 GitR test RStudio shinwang1 phase-1 shiva-prakash zenR Zen style of coding in R shiweipsu package1 shixu0830 VisualCPT R package for hypothesis testing, penalized regression, and visualization for comparison of count data (Current Procedural Terminology codes) that are potentially rare, unbalanced, over-dispersed, and zero-inflated. shizidushu functionalR Try to write a package for my self use with functional programming in mind shk5660 img2pal shkonishi bioR Personal package of functions for Bioinformatics shkonishi bior This is a personal package of R functions for Bioinformatics shkonishi cornet create correlation network with igraph shkonishi hello Exersice of R package development shkonishi rshk This is a personal package of R functions for Bioinformatics shkonishi rsko A personal package of R functions shkonishi rskodata my personal packages of data set shkonishi rskoseq A personal package of R functions for NGS analysis shkonishi rskseq A personal package of R functions for NGS data shlienlab ShlienLab.Core.Filter A R package for filtering somatic mutation data used in the standard production pipeline in the Shlien Lab shlienlab ShlienLab.Core.SSM A R package for processing simple somatic mutations from MuTect2 data used in the Shlien Lab shlienlab cosmic.cancer.gene.census A R package with common functions for annotating and filtering mutation data using the COSMIC cancer gene census shma1 EEXDE Trade signal for German Power Futures shma1 eexfr Generates Trade Signals for French Power Markets shma1 elforbrug Functions to download electricity data shntnu cdp Inspect CDP data shntnu cplog Analyze logs from CellProfiler shntnu cytominerworkshop cytominer workshop shntnu cytominrworkshop cytominr workshop shntnu cytoplot Package for visualizing high-dimensional single-cell data shntnu testrtravis What the Package Does (Title Case) sho-87 Romdb Retrieve movie information using the OMDb API sho-87 foofactors Make Factors Less Annoying shoebodh hydrusR Utility functions to run the HYDRUS-1D soil-water flow model through R shoebodh radialpsd Radially Averaged Power Spectrum of 2D Matrix shoebodh rgampt Green-Ampt infiltration under non-steady rainfall in R shokoohi DMCHMM Differentially Methylated CpG using Hidden Markov Model shosaco vistime an R package for pretty timeline creation shouldsee Rutil Utilities for R shraddhapai FunciSNP Finds tagSNPs overlapping regions of interest. Modified version of Simon Coetzee's BioC package shraddhapai IdeoViz Plots data associated with genomic intervals along chromosomal ideogram. shraddhapai dataExplore R package with generic tools for data exploration shrektan QuantTools A Fork of https://bitbucket.org/quanttools/quanttools shrenikjain38 Minval_installed Installed dump of minval package shrenikjain38 minval No description or website provided. shriisourav shrii R Package - Boxplot shrikanth363 arevPkg test pkg shrikanth363 test shrutigupta23 rkafka Using Apache 'Kafka' Messaging Queue Through 'R' shuanggema robHD shuanggema shuanggema.github.io shuckle16 biab bi ab testing shuckle16 ml useful functions for me doing machine learning shuckle16 mlts functions useful for time series style machine learning shuesler recipesCallSched shug0131 rpsftm CRAN package for Rank Preserving Structural Failure Time Models shuihu causal_effect_estimation Machine learning methods for estimating heterogeneous causal effects and local average treatment effects. shuklak13 anonymizeR Easy-to-use R package containing functions to anonymize datasets shuodata mlr-master mlr-master shuxiaoc agRank Rank Aggregation in Phenotypic Selection shuxiaoc outference A Tool for Valid Inference Corrected for Outlier Removal in Linear Regressions shuyang1987 multilevelMatching shwetagopaul92 TxRegQuery shwetagopaul92 benchmark Compares the acquisition of genotypes via VariantAnnotation readVcf vs the GoogleGenomics approach. shwetagopaul92 restfulSE demonstration of SummarizedExperiment with assay component retrieved from remote HDF5 server shwetagopaul92 restfulSEData shwetagopaul92 txregquery shwetapurushe D3ScatterPlot d3 Scatter plot visualization ported to R using the htmlwidgets framework shwetapurushe weaveR Weave widget ported to R using the htmlwidgets framework siamakz BNBR siamakz BNPseq Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data sicarul redshiftTools R Tools to upload data to an Amazon Redshift Database with good performance. sicarul xray xray: The R Package to have X Ray vision on your datasets siddharthab int64 R package for 64 bit integer types. siddheshdhuri TaxonomyTree siddheshdhuri anonymizeR siddheshdhuri inputAnnotate custom shiny element allowing annotation of text siddheshdhuri sentimentAnalysis siddheshdhuri twitterEx Extension of basic twitteR api siddheshdhuri wkuk.io siddhujetty rpwsdata R package to access PWS data from Wunderground. sidharthanr macml csrp with macml sidiropoulos PSigA R package that scores gene-signatures based on features in the signature PCA space. sidiropoulos RNAprobR-old An R package for analysis of massive parallel sequencing based RNA structure probing data sidiropoulos SigRSF R functions that integrate Gene-Signature based Random Survival Forest analysis. sidiropoulos sinaplot Visualisation package for R sidjai biosplit An R package to model national insect migration sidjai matconv A Matlab to R translator written in R sidjai rhlstats Query and save usage data from HlStatsX game servers sidjai tf2statr Utility to query Team Fortress 2 stats sidohaakma molgenis-api-r sidohaakma molgenis-client-r-api sidohaakma molgenis-client-r-spss sieste SpecsVerification SpecsVerification - R functions for forecast verification sieste real_storm_tracks Storm tracks for Real Projections sigal-shaked sequencesAnonymizer Generates an anonymized sequential dataset sigal-shaked sequencesGenerator R package for generating synthetic sequential data based on an origin dataset. sigbertklinke mmstat R package for creating interactive Shiny applications supporting teaching in statistics significantstats cytowave A toolbox for the analysis of cytometry data significantstats gatingfc significantstats gatingfc2 Gate flow cytometry data using Markov random fields sigopt SigOptR SigOpt's public R client sigurdurthorjonsson bionechi collection of tools used in BIOmass and Numbers Estimation from ECho Integration sigven CancerGenomeReporter sigven OncoVarReporter R package for clinical report for cancer genome variants sigven pcgrDataFree silastittes albatross R package sildeag essentia2R silkeszy Pomona silkyproject silkyR Allows you to make R silky silkyproject silkycore Allows you to make R silky sillasgonzaga lexiconPT R package: Lexicons for Portuguese Text Analysis sillasgonzaga literaturaBR Provides easy access of classic Brazilian books for R users sillasgonzaga mafs Multiple Automatic Forecast Selection silvadenisson electionsBR silvadenisson t_cpp simcor06 gerrymanderdem This is a final group project for the course Geospatial Analysis with R at Clark University in the Fall of 2017. This project attempts to query demographic information based on voting precinct boundaries in order to help further research on gerrymandering. simecek HPQTL Mapping, testing and simulation of highly polygenic QTL simecek HPQTL2 simecek additivityTests R package additivityTests simecek capek Šest románů Karla Čapka připravených pro analýzu v R/tidytext simecek intermediate small R utility for mediation analysis simecek maker Highly experimental R package to ease using of GNU `make` directly from RStudio. simecek mhnet The Metropolis-Hastings simulation over Bayesian networks simecek qtl2 R/qtl2: QTL analysis software for high-dimensional data and complex cross designs simitpatel gpagespeed An R package for the Google Page Speed Insights API. simonfqy rankdistext Extension on R package Rankdist, to incorporate heterogeneity in ranking data. simongarisch R-Capstone-NOAA simongarisch R-Packages-Week-4 Part of Coursera's Building R Packages Week 4 simongrund1 mitml Tools for multiple imputation in multilevel modeling simonhertle RTutorBuildingCodes simonthelwall nicethings A collection of functions for writing nice inline R code in Rmarkdown. simonvalentin wsMediation Within-subject mediation analyses following Montoya and Hayes (2015) simonvalentin wsmediation Within-subject mediation analyses following Montoya and Hayes (2015) simulatr simrel Simulation of Multivariate Linear Model Data simulatr simrel-r6 Simrel Package using R6 sinanshi LPJmL_RUtil R utility functions for the Dynamic Global Vegetation Model LPJmL sinanshi eastbourne.warming sinanshi visotmed Templet of visualisation of maps, plots in R singha53 amritr Amrit's personal data analyses functions, concepts and explorations singha53 pandaR singingintheshower DataScience singingintheshower OperacionesDataScience singmann acss measures of algorithmic complexity singmann acss_data algorithmic complexity of short strings data computed using the coding theorem method singmann afex Analysis of Factorial EXperiments (R package) singmann cmmc Cognitive Measurement Models for Categorical data sinhrks ggfortify Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages. sinhrks pythonic sinhrks quiteuseful sinnweja kinship2 Pedigree creation, plotting, and analytics sipemu DataScience sipemu EventStudyTools sipemu Nonparametric-Functional-Data-Analysis http://www.isa.uni-stuttgart.de/LstSt… sipemu case-based-reasoning sipemu d3Dashboard sipemu ggMUSTAT sipemu similarity Parallel Distance and Similarity Calculation in R sipemu topic-modeling-tool sirusb R3CPET 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process siskac class siskac discordant sissidong 4800-project sissidong rejectionsampling sithjaisong Rmeetup2015 sithjaisong SYT-SKEP.Rpackage An R package providing functions for querying crop health data from the IRRI-SYT SKEP database sivacharansrc summaryr Function that provides a summary statistics for numeric/factor/character columns sivarajankumar edmr Automatically exported from code.google.com/p/edmr sivarajankumar funfunspell.esl sivarajankumar google-refine sivarajankumar jbiowh sivarajankumar kineticspace sivarajankumar rf-ace Automatically exported from code.google.com/p/rf-ace sivarajankumar zinba Automatically exported from code.google.com/p/zinba sivasunku dataPrepare sivasunku evalStrats Evaluate the trading strategies sivasunku myIndicators Various TA indicators sivasunku rulesNtrades siyuany VMaTf R Packages: Variable Mapping and Transformation siyuany autobin siyuany discg discg: Discretization based on extended gini siyuany rpsi R package: Population Stability Index sizespectrum mizer Multi-species size-based ecological modelling in R sjPlot devel sjPlot - Data Visualization for Statistics in Social Science sjPlot esc Effect Size Computation for Meta Analysis sjPlot ggtidyr Create Tidy Data Frames for 'ggplot' from Model Outputs sjPlot sjmisc Utility and recode functions for R and sjPlot sjPlot sjstats Statistical Functions for Regression Models sjPlot strengejacke Wrapper to quickly load the sj-packages. sjackman homebrewr An R package to install software using Homebrew sjackman uniqtag Abbreviate strings to short, unique identifiers sjbonner shinyRMark shiny interface for RMark sjczheng EpiDISH This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user. sje30 eglen2015 Eglen 2015 review article sje30 g2chvc Genes to Cognition: Hippocampus vs Cortex project sje30 g2chvcdata g2chvcdata: Genes to Cognition: hippocampus vs cortex dataset sje30 g2cmeadata sje30 hugo_gh_blog sje30 sjemea Multielectrode array analysis in R sjessa chromswitch An R/Bioconductor package for detecting chromatin state switches sjessa ggmin Clean, minimalist theme for ggplot2 (+ a variant designed for Powerpoint) sjewo cartogram r package for cartogram creation sjewo readstata13 Package to read the Stata 13 (and newer) file format into a R data.frame sjfox rtZIKVrisk sjfox zikaEstimatoR sjhfx Rweibo An interface to the Weibo open platform sjhfx comtool A common tool to build package and so on. sjhfx recharts3 An R Interface to ECharts 3 sjhfx rwda R微博数据分析 sjkiss r_scripts sjkiss tm.lexicodeR tm.lexicoderR sjkiss tm.lexis.canada Read in news articles from Lexis Nexis database to R package tm sjkiss tm.newsstand Plugin in R package tm to read in Canadian NewsStand packages sjkiss tm.plugin.waterloo sjmgarnier GIr A simple R package to search and retrieve pictures from Google Images sjmgarnier RmdTemplates R package containing templates for authoring manuscripts for various journals. sjmgarnier graphZoo A small R package to automate the formatting of ggplot2 graphs for graphzoo.tumblr.com. My guess is that it won't be very useful to anyone but me :-) sjmgarnier viridis Implementation of the Matplolib 'viridis' color map in R sjmgarnier viridisLite Implementation of the Matplolib 'viridis' color map in R (lite version) sjoerdvds crtests Classifier and regression tests sjoerdvds rudone Notifications on R code completion sjoshistrats JuiceBox R package designed to help perform cross validation and grid-search optimization for custom machine learning processes and pipelines in a multicore fashion. sjp GeneralizedHyperbolic An improvement to David Scott's HyperbolicDist R package. NOTE: This package is now available on CRAN, please download it from there. sjp NormalLaplace This package provides common functions for interaction with the Normal Laplace and Generalised Normal Laplace distributions. sjp grConvert A mirror of the grConvert package hosted on R-Forge. sjp grImport2 A mirror of the grImport2 package hosted on R-Forge. sjp selectr Translate CSS Selectors to XPath Expressions sjp sjpMScThesis A companion package to my Masters Thesis sjystu SwellR Converting an R graphical output into a braille ready-to-print pdf file for visually impaired R users optimized for Swell Form Machine sjystu tactileR R package for creating tactile graphics for users with visual impairments. sk6aus6 hashtag skandium vanguaRd skardhamar rga R Google Analytics skembel picante R tools for integrating phylogenies and ecology skembel seqtools Kembel lab R tools for working with sequence data skeydan fars skfogg temptool temptool skgrange ceilr R package to help deal with ceilometer data skgrange databaser An R package to keep database interaction easy and consistent skgrange enlightenr An R package to make doing fancy statistics easy skgrange envirologgerr An R interface to the Envirologger API skgrange gissr A collection of spatial functions to make R a more effective GIS skgrange normalweatherr R package to conduct meteorological/weather normalisation on air quality skgrange polarplotr Functions to plot polar-plots skgrange sfinancer An R package to help with exploring financial data skgrange smonitor A framework and a collection of functions to allow for maintenance of air quality monitoring data skgrange systemr An R package to return structured system calls skgrange threadr A collection of R utility functions to link pieces of analysis together skgrange waclr An R package for activities at Wolfson Atmospheric Chemistry Laboratory (WACL) skingan JammerStats An R function for calculating total points and lead jam percentage skinnider cvgba Testing network functional connectivity by guilt-by-association cross-validation skinnider flavin Flavin is a library for automated validation of interaction networks skiptoniam artists Colour palettes based on famous artwork skiptoniam bbgdm bbgdm: Assess uncertainty in Generalised Dissimilarity Models via a Bayesian bootstrap skiptoniam dhmpr Dynamic habitat (landscape) meta-populations models in R skiptoniam dlmpr skiptoniam ecomix ecomix is a package to implement model based species level (Species Archetype Models) or site level (Region of Common Profile) grouping of community data. skiptoniam qrbp quasi-random background point generation for Poisson point process modelling skirmer skpack Personal R Package - my homemade and frequently used functions. skoplev bdmerge skoplev bdmergeR skounis sdcMicro skoval RISmed RISmed is an R package for downloading and analyzing data from the NCBI databases skoval WOMBATsport R package with datasets used in the Sports Analytics with R tutorial at Melbourne Data Science Week skoval anoint Tools for assessing multiple treatment-covariate interactions skoval coxph.risk Absolute risk estimation based on Cox proportional hazards models for the primary and competing events skoval deuce R package for web scraping of tennis data skranz EconCurves Tools for economic models based on curves skranz EconJournalData Create List of Economic Articles with Data (currently designed for internal use) skranz EconModels Tools for building and solving simple 101 econ models skranz EconStories Telling interactive economic stories for teaching skranz ExampleDoc Add examples to R help files from examples.funname functions skranz InfluenceGraph Tools for analyzing influence graph among variables skranz LyxMaxima An R based GUI for computer algebra with Lyx using Maxima skranz RDockerStudio skranz RMaxima Interface between R and Maxima (an open source computer algebra system) skranz RSGSolve R Interface to SGSolve package to solve stochastic games skranz RTutor Creating R exercises with automatic assement of student's solutions skranz RTutor2 Temporary Project: Rewrite internal structure of RTutor skranz RTutor3 Temporary Project: Rewrite RTutor skranz RTutorBankRuns RTutor problem set based on "Understanding Bank Runs: The Importance of Depositor-Bank Relationships and Networks" by Rajkamal Iyer and Manju Puri skranz RTutorClicker skranz RTutorExample skranz RTutorShroudedFees RTutor Problem set based on the AER article "The Impact of Shrouded Fees: Evidence From a Natural Experiment in the Indian Mutual Funds Market" skranz RTutorTeacher RTutor Teacher Panel (Clicker Presentations, PS, etc) skranz RTutorTseTse RTutor Problemset about the economic impacts effect of TseTse flies skranz RTutorWeb Hosting RTutor problem sets on web server skranz SeminarMatching Shiny App for Seminar Placement skranz StratTourn Tournament of game theoretic strategies skranz TableTree Describe a tree data structure as a data frame an conveniently access elements. skranz WhitelistEval Check whether arbitrary R code satisfies whitelist or black list of allowed commands skranz XEconDB Towards an experimental economic database (work in progress) skranz YamlObjects Implement a simple Yaml based object system in R skranz appForms Tools to create and arrange input forms for shiny apps using simple yaml field specification skranz armd Academic RMarkdown skranz bbsvg R package to create qualitative "blackboard figures" as SVG skranz codeUtils Helper functions for parsing and classifying R code. Useful for domain specific languages. skranz courser A simply course management system for RTutor Slides, Problemsets, Quizzes, Clicker etc skranz courserClicker Clicker quizzes for courser courses skranz courserHomeSlides Courser Widgets for Slides That Students Read at Home skranz courserPeerquiz Peerquizes for courser skranz dataquiz Different types of data based quizzes (shinyEvents) skranz dbmisc Tools for working with databases in R skranz ddsim Simple dynamic discrete time simulations, focus on economics skranz dplyrExtras Some extra functionality that is not (yet) in dplyr, e.g. mutate_if or s_filter, s_arrange ,... skranz dyngame Solving discounted stochastic games with monetary transfers skranz gtree Game-Theoretic Representation of Economic Experiments skranz loginPart A very simple login framework for shiny apps via email verification skranz matteLogin login forms for shiny skranz modify modify is a function to augment dplyr for quick replacement by reference as in data.table skranz optims Try different optimization algorithms from various packages skranz peerquiz Peer review exercises in form of a quiz skranz rampl Tools to use AMPL models via R skranz regtools tools for presenting regressions results skranz repgame Solve discounted repeated games with monetary transfers skranz restorepoint Debugging in R with restore points skranz rgmpl Tools to use GMPL models in R via glpkApi skranz rmdtools Tools for RMarkdown skranz rowmins Quickly compute min or max of each row or column of a matrix. skranz shinyAce2 extensions to shinyAce skranz shinyEvents Use shiny with event handlers instead of reactivity skranz shinyEventsClicker Shiny-based clicker app for lectures skranz shinyEventsLogin Login Module for ShinyEvents Apps skranz shinyEventsUI some shiny widgets (only work with a shinyEvents app) skranz shinyPart Framework for creating parts of a shinyApp skranz shinyQuiz Quiz widget for shiny events apps skranz simplyDynamic Simulations of simple discrete time dynamic models skranz skUtils older utility functions used for my packages dyngame and repgame skranz sktools R tools for my courses skranz stringtools stringtools skranz stuko Admin shiny app for course administration skranz svgdiagram R package to create svg from .gv graphviz file skranz symbeqs Symbolically solving or simplifying systems of equations in R skranz wat Tools for web-assissted teaching via shiny server skranz webforms Forms for shinyEvents apps skranz whitelistcalls Checking R code against a whitelist or a blacklist skranz whitelists Default whitelists for the R package whitlistcalls sktivd collabExample Git의 기능에 익숙해져보자! skubheka myfirstpackage To store all r packages skuma18 rpacakge skurscheid deepToolsUtils a collection of R functions used for the supporting analysis of HTS-data with deepTools skvrnami listr R package for processing data in candidate lists. skvrnami morphoditar R package for accessing MorphoDiTa API skyhorsetomoon Trumpet The package is designed for visualization of quality assessment of methylated RNA immunoprecipitation sequencing data. skylernorgaard1 math365 skylics crack_analysis Use simple ML techniques to predict how petroluem product cracks will change skylics stock_analysis Quant analysis for stock variation slackline nmisc Personal R package with various functions I find useful or that summarise small data sets slagtermaarten maartenutils General utilities for R development slagtermaarten serializer Wrapper around existing serialization infrastructure in R (writeRDS) that obviates typical associated boilerplate code slagtermaarten slagtermaarten slarge HabMod Habitat modeling for NE US Fish slarge fao27 slarge fisheryO Fisheries Overviews slaverman SnoLyze SNOMED CT Expression Constraint Language Execution Engine in R sleavitt10 TestRepository sleavitt10 oddsnew sleire etrm etrm: Energy Trading and Risk Management in R sleire hedgeR Forward curve generation and portfolio insurance strategies for commodity price risk management sleire sleire.github.io slfan2013 SERRF Systematic Error Removal using Random Forest (SERRF) for large-scale untargeted metabolomics slfan2013 SERRFweb slfan2017 Testing for testing slin30 wzMisc Miscellaneous functions sliptn0xt DEEP DEEP (Dynamic Experiments for Estimating Preferences) slisovski ArcticBreedR Geolocation in 24 hours daylight conditions slisovski FourSeasons R package to calcualte major seasonal components slisovski GeoLight R Package: Light-level geolocation analysis tool slisovski TwGeos R Package: Basic data processing for light-level geolocation archival tags slizb copernicus Numerical Simulations of our Solar System slopp data_bootcamp_2016 slopp sparkPCARD slopp succincteR RStudio Addin to Create a .R script from .Rmd slowkow CENTIPEDE.tutorial :bug: How to use CENTIPEDE to determine if a transcription factor is bound. slowkow ggrepel :round_pushpin: Repel overlapping text labels away from each other. slowkow homerkit Read HOMER motif analysis output in R. slowkow mhg 📉 Non-parametric rank enrichment test for binary data. slowkow proxysnps 🔖 Get SNP proxies from the 1000 Genomes Project. slowkow tftargets :dart: Human transcription factor target genes. slphyx Araiwa slphyx MEEM slphyx RIndivaria The R version of Indivaria slphyx RLongLexTo An R interface to LexTo (https://github.com/telember/lexto) slphyx RLongdoDict Longdo Dictionary in RStudio slphyx maemod A user friendly compartmental modelling enviroment in R slrr4 IRN No description or website provided. sluedtke gclassification slwu89 GA slwu89 RACD stochastic simulation of reactive active case detection for p. falciparum slzhao KEGGprofile smach nicarclasstest smach rdateutils This package creates date and string objects for common dates relative to the current date such as yesterday.date(), yesterday.string(), etc. smach relectionutils smach rivsutils Collection of visualization functions I've found useful over the years smach rmiscutils This will be a collection of miscellaneous R functions I've written or found that have been useful over the years. I'm just starting to collect these. smach rvisutils Collection of visualization functions I've found useful over the years smaegol biostrext Extension to Biostrings R package smanchan96 binspec A preprocessing, peak-finding, classification and feature importance library in R smanchan96 clustspec A clustering and feature selection package in R smartbeta portfolio.optimization Contemporary Portfolio Optimization with R smartbeta quant-r Become a Quant with R - Official R Package smartcity2 SecureAPI-B smartcity2 TTP smartell CatchMSY Integrated Catch MSY method for data poor stock assessment. smartinsightsfromdata rd3pie A d3-based library in R with hrmlwidgets smartinsightsfromdata rdatamaps smartinsightsfromdata rpivotTable A R wrapper for the great library pivottable smartinsightsfromdata shinyhdtable smartshark rSHARK R library for using SmartSHARK smasongarrison discord r package discord smasongarrison enumR Factor Enumeration R Package smbache blatr A simple R wrapper for Blat SMTP mailer for Windows. smbache dairy Let R Remember the Milk smbache ensurer Ensure values are as expected at runtime smbache immutequality Use Equality Assignment for Immutability in R smbache import An Import Mechanism For R smbache loggr Easy and flexible logging for R smbache magrittr R package to bring forward-piping features ala F#'s |> operator. Ceci n'est pas un pipe. smbache nestpas Pipe-friendly Aliases for R smbache remarkr smbache squr Structured Query Utility for R smbache zeroclipr Simple ZeroClipboard Clipboard Functionality for Shiny/R Applications smc77 rlglue R package for RL-Glue smccord terradactyl Tools for using TerrADat smeister LCE_package smeister viralEXP smgogarten GENESIS GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness smgogarten GWASTools Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis smgogarten PlateMap R package for creating genotyping plate maps smgogarten SeqVarTools An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis smilesun ParamHelpers2 smiljanicm dendrometeR No description or website provided. smisaleh STROMA4 Submission for Bioconductor smitdave MASH Mobile Analysis and Simulation for Health smithlabcode preseqR smithlabcode riborex Riborex: Fast and flexible identification of differential translation from Ribo-seq data smitty1788 mercatoR An R package for simple navigation of QGIS, GRASS, SAGA, and GDAL algorithms smkell rffl smmurphy smmR Personal R Package smn74 GFD Tests for General Factorial Designs smn74 MANOVA.RM MANOVA.RM smn74 rankMANOVA rankMANOVA smockin CINRedCap smoeding usl Analyze system scalability with the Universal Scalability Law smolnos pulver smolnos scaling-journey smouksassi nhanesgamlss gamlss models on nhanes data that enable pediatric simulation of age matched weight smu smumisc Collection of miscellaneous R function mainly related to climate (model) data analysis. smurthy710 Shiny-project This contains the files for my shiny peoject smwesten-usgs autobeale-R R implementation of autobeale. smwesten-usgs recharge Collection of baseflow separation / recession algorithms for estimating groundwater recharge snaketron BcellNet Tool for network-based analysis of B-cell clonal expansion snaketron genphen A tool for computing genotype-phenotype associations using statistical learning techniques. snandi RFunctionsSN snandi Registration snarf-snarf karma Kind of automated ARMA - Time series machine learning R package snarles ClassEx Extrapolation methods for multi-class classification accuracy snarles introStatML R package for a computation-based introduction to statistics and machine learning snarles testUtils testUtils sneumann CAMERA This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data sneumann MCUPGMAR An R wrapper around MC-UPGMA - Accurate hierarchical clustering for huge data sneumann MetShot R package for Nearline acquisition and processing of tandem-MS data sneumann RAMClustR Assigning precursor-product ion relationships in indiscriminant MS/MS data sneumann RMassBank Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html sneumann RaMoNA R Interface to MoNA sneumann Rdisop This is the git repository matching the Bioconductor package Rdisop: Decomposition of Isotopic Patterns sneumann mtbls2 Development of Arabidopsis dataset for www.ebi.ac.uk/metabolights sneumann mtblsHypericum sneumann mzR This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data) sneumann mzR-playground Playground area for the mzR package. The main code repository is now at https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mzR/ sneumann xcms This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis sneumann xcms-presvnbridge Tempoary git repo for disruptive changes not yes in XCMS snjy9182 smt snjy9182 smt-0.3.9-BETA snjy9182 smt-beta snowball-project DESnowball snowball snoweye EMCluster EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution snoweye MixSim Simulating Data to Study Performance of Clustering Algorithms snoweye QZ Generalized Eigenvalues and QZ Decomposition snoweye Rmpi_PROF Rmpi with pbdPROF snoweye cubfits Codon Usage Bias Fits snoweye pbdNCDF4 Parallel NetCDF version 4 snoweye pbdRPC Remote Procedure Call snoweye pbdZMQ Interface to ZeroMQ snoweye phyclust Phylogenetic Clustering (Phyloclustering) snoweye pmclust Parallel Model-Based Clustering snowflakedb dplyr-snowflakedb SnowflakeDB backend for dplyr snowplow elasticsearch-housekeeper snowplow iglu-ruby-client snowplow iglu-rust-client snowplow snowplow-logfile-source snowplow snowplow-tco-model UNMAINTAINED. Model your AWS costs for running Snowplow over time snowplow vendor-matrix snp LFQ label-free quantitative proteomics data analysis snu-stat helloworldpackage snurpdurp cappack Capstone Package socdataR natality Analyses of CDC Births in the United States data socdataR wonderapi Assists in making queries to CDC Wonder API soeque1 KoNLPQ NLPs soerenkuenzel forestry soerenkuenzel hte sofia65412 basepkg sofpj mumm mumm softloud dontpanic softloud metabroom sohrabsa ddclone ddClone -- Joint clustering of single cell and bulk data sojourningNorth JAGST sokole MCSim An R package for metacommunity simulations sokole testpack solavrov fval Construct and value financial instruments in R solavrov fxor Simulate rabalancing of currency structure with fx options in R solavrov hlpr Just a general helper. Set of useful R functions solavrov sq5 Set of functions that helps to find solutions of a problem about picking m cells of n-by-n square with no more than k cells lie on one line. The package was created to help my son to solve a math problem :-) solavrov tcost solavrov tgit Just a test of using git with RStudio solavrov tvec sollano AppInventarioNativas Shinyapp for processing forest inventory data of natural forests. sollano forestr Package for forest management and mensuration data analysis. solvebio solvebio-r SolveBio R Bindings solventrix AtlasCohortExchange solvsa BayesPLS solvsa lpls solvsa simrel sommars MBTest Compare kernel with Markov bases sondreus QuickCoefPlot Quick and Easy OLS Coefficient Plots in R sondreus QuickReg A Fast and Easy OLS Interface in R sondreus coverage Coverage - R package (see below) sondreus seeAI Visualizations of Machine Learning Processes songxh0424 MPrOVE songxh0424 MPrOVE-package sonjaPerkovic SSI An R package which computes Systematicity of Search Index (SSI) sontron cndrg sontron kindodrg sontron stronmisc sontron test test R and github soodoku abbyyR R Client for the Abbyy Cloud OCR soodoku captR R Client for the Captricity API soodoku captr R Client for the Captricity API soodoku clarifai R Client for the Clarifai API. More at: http://soodoku.github.io/clarifai/ soodoku ethnicolor Race and Ethnicity based on name using data from census, voter reg. files, etc. soodoku goji R Package With Functions for Generalized Variance, Formatting Strings, Cleaning Text etc. soodoku guess Adjust naive estimates of learning for guessing soodoku namesexdata Data on international first names and sex of people with that name soodoku outsource outsource: Create Distributed Coding Tasks from R soodoku recognize Assess OCR quality: Compare OCR to human transcription soodoku soodoku.github.com soodoku tuber :sweet_potato: Access YouTube from R soodoku tubern R Client for the Youtube Analytics and Reporting API soodoku virustotal R client for the Virustotal Public API. Virustotal is a Google service that analyzes files and URLs for viruses etc. sooheang OutlierDC Identification of Outlying Observations in Censored Data sooheang OutlierDM Outlier Detection for Mass-Spectrometry Data sooheang PythonR rPython with jsonlite pacakge sooheang kaps K-adaptive partitioning for survival data sophie-haynes text.pack sor16 RCmodels sor16 ggKaplanMeier A general method to generate Kaplan Meyer plots using ggplot2 sor16 ggKaplanMeyer A general method to generate Kaplan Meyer plots using ggplot2 sor16 survivalValidation sorenmacbeth googleanalytics4r An R package that wraps the Google Analytics API sorenmacbeth lein-cargo sorenmacbeth lein-marathon sorenmacbeth riak-cascading sorhawell fastRditijuu seamlessClusterDTUfuncitons sorhawell favorita favorita-grocery-sales-forecasting kaggle share code sorhawell ffIntro package with course material for a gently introduction to RF and forestFloor sorhawell forestFloor R package to visualize mapping structures of random forests with feature contributions sorhawell happytest this is nothing special sorhawell house4years sorhawell rgl this this a rgl dummy library, pretending rgl is installed sosoc shinysoc Shiny tools for ocean colour soumyakannan promact soumyaray 99bottles soumyaray hw-xor_defender soumyaray playr Play and learn statistics souravc83 fastAdaboost A blazingly fast implementation of Adaboost in R, based on C++ backend souravc83 fastBoost A fast Adaboost implementation for R soyoung-park FDAdesign R package for Optimal Design spaceappchile team20 spacedman hospitr Hospital Occupancy Simulation Processes Implemented Through R spacedman smoop Smoothing Over Population counts spalmas Nothopack No description or website provided. spapillon CopyNumber450k CN Project for the 450k platform sparklineanalytics rgoogleslides R wrapper for Google Slides API sparsegdm sgdm_package SGDM package spatstat s2 R bindings for Google's s2 library for geometry on the sphere spatstat spatstat Development version of 'spatstat' package .............................. spatstat spatstat.core EXPERIMENTAL sub-package of spatstat containing core functionality spatstat spatstat.data Sub-package of spatstat containing all datasets spatstat spatstat.sphere Point patterns on the sphere spatstat spatstat.utils Sub-package of spatstat containing utility functions spedygiorgio lifecontingencies Financial and Actuarial Mathematics for Life Contingencies spedygiorgio markovchain Easy Handling Discrete Time Markov Chains spedygiorgio mbbefd Destruction rate modeling with the Maxwell Boltzmann Bose Einstein Fermi Dirac (MBBEFD) distribution speegled 4800Test speegled cpbaywave Bayesian Wavelet Change Point Detection spell098 rnaseq spell098 rnaseqFunctions spell098 rnaseq_app spell098 rnaseq_functions2 spell098 rnaseqapp2 No description or website provided. spennihana rxwidgets R Kernel Widgets spflanagan gwscaR This repository contains an R package with a number of population genomics tools, including a wrapper that will run an Fst-based genome-wide selection components analysis spgarbet example-R-package The git artifact of a creating a very simple example R package spgarbet tangram Table Grammar package for R spgarbet tg Table Grammar package for R spirgel ggnba ggplot2 nba themes, scales, and geoms spirgel nscprepr Prepares and writes files to submit to the National Student Clearinghouse spisakt pTFCE Probabilistic Threshold-free Cluster Enhancement of Neuroimages spiwokv metadynminer Package for reading, analysis and visualization of metadynamics HILLS spkal datadim R package that estimates dimention of datasets spluque diveMove diveMove is a GNU R package with tools to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. It also provides miscellaneous functions for handling location data. spo111 DynaMO sportsanalyst oraobjectstore sprouffske growthcurver spushpak UnequalReturnHist squipbar VARext squipbar abSan squipbar cheby Code for (shape-preserving) polynomial approximation squipbar debtLimit squipbar edsProjection Implements the Maliars-Maliars simulation/projection solution method. squipbar filters squipbar linBilin Fast multi-dimensional linear interpolation code srdyal diffusiontest diffusiontest package sremmers FBRbeta FBRbeta sriramab cchaid Building a decision tree based on chaid srisub98 sentiment_analysis_app srkob1 taipan Image Annotations in R srtaheri MSstatsQC srtg4we5gsetrgwhreyt tdyhsrgesrgaesrgfae srtg4we5gsetrgwhreyt ythsrtg534srgedthdgd sruzi24 Lab4trial2 sruzi24 multiple_comparisons This package should be able to clean any csv file or data table opened in it, conduct multiple t-tests between any number of factors, apply p-value adjustments, and produce a boxplot of these comparisons. srvanderplas GoogleScholarScrapeR Code to scrape google scholar results for a single author srvanderplas NuclearData Package for scraping and storing data pulled from the NRC and other available industry sources srvanderplas RJDBC Fork of RJDBC that works with OSI-PI limitations srvanderplas ShinyLineup R skeleton for a Shiny applet to test lineups. srvanderplas ggextra Extra geoms and functions for ggplot2 srvanderplas nppd NPPD functions srvanderplas shinyTestR Addons to facilitate useabiliity and psychological testing with Shiny ssanchezAZTI BayesianSchaeffer Bayesian Schaeffer surplus production model in R ssanchezAZTI FLBEIAane FLBEIA package version used in stecf1403 (Bay of Biscay anchovy management plan) ssarda genomeutils An R helper package for routine tasks in genome analysis ssaxe-usgs METsteps A package for simplifying the process of water balance component product evaluation. sscogges controlhet R functions for causal inference with multiple versions of control ssefick StreamMetabolism R package for calculating single station stream metabolism from diurnal oxygen curves ssmpsn2 flowAssist ssokolen coulter Scripts for Importing and Processing Coulter Data ssokolen fluoroscripts Scripts for Importing and Processing Spectrofluorometry Data ssokolen metcourse Tools for Metabolic Time-course Data ssoro411 bayesae ssoubeyrand CloNcaSe Effective size (Nc) and sex rate (s) estimator for partially clonal populations ssustat regbook No description or website provided. staaln qpath stablemarkets KeilSim Functions supporting Statistical Computing Final Project Analysis stablemarkets sumstats stacyderuiter s245 tools for STAT 245 stakahama APRLrio R Input/Output functions stakahama Rfunctools R package consisting of helper functions that I use stalynGuerrero multisae stamara6 LeanTopDown stamats MKmisc R package MKmisc stamnosslin alexis106 alexis106 stamnosslin mntools R package: various useful functions stan-dev bayesplot bayesplot R package for plotting Bayesian models stan-dev gmo Inference on marginal distributions using gradient-based optimization stan-dev loo loo R package for approximate leave-one-out cross-validation and WAIC stan-dev projpred Projection predictive variable selection stan-dev rstanarm rstanarm R package for Bayesian applied regression modeling stan-dev rstantools Tools for Developing R Packages Interfacing with Stan stan-dev shinystan shinystan R package and ShinyStan GUI stanchapski week4package stanfill QC-ART Dynamic, unsupervised quality control methodology for mass spectrometry stanfill apsimr Running APSIM from R stanfill rotationsC Code to run interval simulations stanlazic BayesCombo Bayesian Evidence Combination stanlazic desiR Desirability Functions for Ranking, Selection, and Data Integration stanlazic labstats Data Sets for the Book "Experimental Design for Laboratory Biologists" stanleycai123 PRISM Cell-Cell Chromatin Accessibility Variation stanleycai123 PRISM.package stanmcgill 680 stanstrup APCS Auto Process Chemical Standards stanstrup PeakABro Peaklist Annotator and Browser stanstrup PeakBro Peaklist annotator and browser stanstrup PredRet Shiny app for retention time prediction stanstrup Rplot.extra R functions for various plots stanstrup chemhelper R functions helpful in working with chemical data stanstrup commonMZ A collection of common mz values found in mass spectrometry. stanstrup common_mz A collection of common mz values found in mass spectrometry. stanstrup convert.waters.raw Converts files from Waters .raw format to mzData. stanstrup heatmap3 Replacement function for gtools' heatmap.2 function. This function calculates distance after scaling in contrast to heatmap.2. stanstrup jchemR wrapper functions for the commandline version of jchem (cxcalc) stanstrup massageR Functions for data massaging in R stanstrup mwtabR Parser for mwtab files from the metabolomicsworkbench stanstrup obabel2R Functions for calling openbabel executable inside R stanstrup rmongodb.quick Convenience functions and workaround for bugs in rmongodb stanyip bipois Bivariate Poisson Distribution for R stas-g MLhelper Some helper functions for ML analysis stas-g funfun A collection of general-purpose utility functions stat243proj GA statOmics MSqRob Robust statistical inference for quantitative LC-MS proteomics statOmics MSqRobData statOmics stageR stageR package statOmics zingeR zero-inflated negative binomial gene expression in R statTarget statTarget2 statapps bhm Biomarker Threshold Models (version 1.05) statapps hbthm Bayesian Threhold Model statapps lplb Local Partial Likelihood Bootstrap Test statapps power.ctepd Power and sample size for clinical trials and epidemiolog statcodes nproc statcodes pgraph statcourses essexBigdata statech CommonPlots A package that allows the user to easily create a wide range of plots commonly used in statistical analysis statech ggutils Utility functions that retrieve information from, remove elements of, and add text to a plot object created by ggplot2 statgenlmu coala A Framework for Coalescent Simulation in R statgenlmu jaatha A Simulation-based Parameter Estimation Method statguy Blur An R package for finding convolution for subsets of large rasters (to determine effective spatial scales) statguy Mildew Supplementary code for the Science paper of plantago-mildew metapopulation dynamics. statguy R-Spatio-Temporal (deprecated) statguy STREM Supplementary code for the paper "A spatio-temporally explicit random encounter model for large-scale population surveys" statguy SpaceTimeModels An R package for fitting parametric spatial and spatio-temporal models with INLA statisfactions csound NOTE: This package ONLY works with Csound5. This R package allows basic access to the Csound API from R. This is mostly intended as a backend for the playitbyr package. statisfactions genova R Interface to GENOVA software for Generalizability Analysis statisfactions pipeline Set up a data pipeline in R statisfactions playitbyr NOTE: Depends on obsolete packages and only works with Csound 6. Play it By R is a flexible toolkit for data sonification in R. The functions allow the user to map data onto sonic parameters like pitch, tempo, and rhythm, and output sound and sound files. statist7 sitar Growth curve analysis statistikat VIM This package introduces new tools for the visualization of missing and/or imputed values, which can be used for exploring the data and the structure of the missing and/or imputed values. Depending on this structure of the missing values, the corresponding methods may help to identify the mechanism generating the missings and allows to explore the data including missing values. In addition, the quality of imputation can be visually explored using various univariate, bivariate, multiple and multivariate plot methods. statistikat mzR R package to compute estimates and their errors for Austrian Microcensus data statistikat sampSTAT Auxilliary functions for sampling at STAT statistikat simPop statistikat surveysd Estimate standarad deviation of estimates in complex surveys using bootstrap weights. statistikat tatoo Table tools: tools for combining data frames and exporting them to xlsx statistikat x12 The R package x12 statistikat x12GUI The R package x12GUI statlab permuter R functions to develop the application examples presented in "Permutation Tests for Complex Data: Theory, Applications and Software" - Pesarin, Salmaso statmach recommendationengine statnet EpiModel Mathematical Modeling of Infectious Disease Dynamics statnet EpiModelHIV Network Models of HIV Transmission Dynamics among MSM and Heterosexuals statnet EpiModelHIVhet Mathematical Modeling for HIV Transmission Dynamics among Heterosexuals statnet EpiModelHIVmsm Network Models of HIV Transmission Dynamics among MSM statnet EpiModelHPC High-Performance Computing Extensions for EpiModel statnet concurrency.sim Microsimulation Model for Concurrency on HIV-1 Transmission Dynamics statnet ergm Fit, Simulate and Diagnose Exponential-Family Models for Networks statnet ergm.ego Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data http://statnet.org statnet ergm.terms.contrib Community-contributed ERGM model terms statnet latentnet Latent Position and Cluster Models for Statistical Networks statnet network Classes for Relational Data statnet networkDynamic Dynamic Extensions for Network Objects statnet statnet.common Common R Scripts and Utilities Used by the Statnet Project Software statnet statnetWeb A graphical user interface for network modeling with the 'statnet' software statnet tergm Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Models statnet tergmLite A fast, simplified version of TERGM-based simulation for epidemic modeling statnmap GeoDist Constrained distance calculation and associated geotools statnmap HatchedPolygons Create a hatched area for SpatialPolygons in R statnmap SDMSelect Cross-validation model selection and species distribution mapping statquant anytime-issue36 Cloning anytime to look into issue 36 statquant ggplot2Example statquant qserver A working (on Fedora 23) R package allowing to connect to a kdb server and send object from R to kdb statquant sp.test statquant squarr util package statquant statquant.github.io stats4sd GGEBiplots GGE Biplots rendered in ggplot2 stats4sd SurveySolutions2R Import "Tabular Format" Data Exported from Survey Solutions HQ into R statsccpr ovb statsccpr sensemakr statsmaths adf Abstract data frames statsmaths ado Abstract Data Objects for Parallel and Chunk-Wise Processing statsmaths baseN convert integer and numeric vectors into string representations with an arbitrary base statsmaths cleanNLP R package providing annotators and a tidy data model for natural language processing statsmaths coreNLP Wrappers around Stanford CoreNLP Tools statsmaths dgof Discrete Goodness-of-Fit Tests statsmaths fasttext statsmaths fasttextM Fast Multilingual Word Embeddings statsmaths fileDB Binary Search on Flat Files statsmaths genlasso Path algorithm for generalized lasso problems statsmaths hbase R interface to hbase statsmaths hdlm Fitting High Dimensional Linear Models statsmaths hpart R program to determine where a key was sent in a hadoop partitioner statsmaths iosub Tools for fast I/O of Data Subsets statsmaths kerasR R interface to the keras library statsmaths leaderCluster Implementation of Hartigan's leader clustering algorithm statsmaths matter Convert tidy data frames to a set of matrices statsmaths rGeoHash Converts between latitude-longitude and a geohash string statsmaths smodels statsmaths sotu State of the Union Addresses statsmaths timezone r package to convert lat, lon, timestamp triples to timezone and offset statsmaths wnet Object-oriented WordNet Wrappers stattleship stattleship-r Stattleship R Wrapper statwonk Rcompression A fork of Rcompression. Ideally I'd like to port the lz4 algorithm over to this package, care to help? Source: http://www.omegahat.org/Rcompression/ statwonk openNHTSA An R wrapper for the U.S. Department of Transportation National Highway Traffic Safety Administration's API. statwonk reliability An R package for analyzing the reliability of systems. statwonk testly A Bayesian A/B testing tool written for R staudtlex ame Compute average marginal effects and standard errors in R stavakol covsep R package 'covsep' stavakol ftsspec R Package 'ftsspec' ste-depo INSPEcT INSPEcT (INference of Synthesis, Processing and dEgradation rates in Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in order to evaluate synthesis, processing and degradation rates and asses via modeling the rates that determines changes in mature mRNA levels. steadyfish ogdindiar R package to access data from Open Government Data Platform - India steadyfish temp stefan-schroedl plotluck R tool for automated creation of ggplots. Examines one, two, or three variables and creates, based on their characteristics, a scatter, violin, box, bar, density, hex or spine plot, or a heat map. Also automates handling of observation weights, log-scaling of axes, reordering of factor levels, and overlays of smoothing curves and median lines. stefan8888 testpackage stefanavey titer An R package for analyzing and visualizing antibody titer data stefanbirr QPBoot Model validation using Quantile Spectral Analysis and Parametric Bootstrap techniques stefanedwards Siccuracy Stefan's imputation accuracy package stefanedwards lemon 🍊 Lemon --- Freshing up your ggplots stefanedwards splot Just another ggplot2 package, Stefans plot package. stefano-meschiari dict A better dictionary class for R. stefano-meschiari latex2exp Use LaTeX in R stefano-meschiari niceR Functions and classes that make working in R niceR. stefanocoretta rticulate Ultrasound Tongue Imaging in R stefanocoretta speakr speakr: A Wrapper for the Phonetic Software Praat stefanocoretta tidymv Tidy Model Visualisation package stefanrameseder PartiallyFD stefanstro PostPARAFAC A new R package that deals with post-processing data from a PARAFAC model steffilazerte LITAP Flow analysis of elevation data including pit removal. Based on R. A. (Bob) MacMillan's FlowMapR program. steffilazerte diagnostics Residual and QQ normality plots, multicollinearity, influential observations, transformations. steffilazerte envirocan R package for downloading weather data from Environment Canada steffilazerte feedr R package for working with data collected from RFID feeder visits steffilazerte testing Testing various R tidbits in a clean environment steffilazerte weathercan R package for downloading weather data from Environment and Climate Change Canada stefmue georefum An R Package for Processing and Linking of Spatial Data Within the GeorefUm Project at GESIS stefvanbuuren AGD Analysis of growth data stefvanbuuren mice Multivariate Imputation by Chained Equations steibelj gwaR A package for GWA from GBLUP models steinarv StateSpace steinarv armaegarchd steinarv densPred steinarv k1 steinarv k2 steinarv k3 steinarv lAAG steinarv logacd steinarv paper1 steinarv predX steinarv quantileVaR steinarv s1 steinarv zllw steinbaugh basejump Base functions for bioinformatics and R package development. steinbaugh bb8 Trusty sidekick for R package development. steinbaugh rnaiscreen Automated scoring for a C. elegans genome-wide RNAi screen. steinbaugh seqcloudr Computational biology tools steinbaugh worminfo C. elegans genome annotations and RNAi clone mappings. steingod R-enbuest Ocean surface energy budget steingod R-makemymap Plot maps using maptools and ggplot2 steingod R-mipolsat Interface to local AVHRR data and FMCOL collocation steingod R-miuvar UV-index related functions. steingod R-ncradflux Interface to radiative observations in NetCDF/CF. steingod R-osisaf Interface to OSISAF products, includes map generation stekhoven missForest missForest is a nonparametric, mixed-type imputation method for basically any type of data for the statistical software R. stela2502 BioData An R R6 class to store biological data. stela2502 ExpressionSet A not working R package for expression analysis - patched up to follow my work rutines. stela2502 NGScollation A R project to group several NGS datasets (StefansExpressionSet) for a hypothesis generating analysis. stela2502 NGSexpressionSet stela2502 RFclust.SGE R random forest clustering using a sun grid engine backend. stela2502 Rscexv The new SCExV R backend (S4) stela2502 StefansExpressionSet Moved ExpressionSet to StefansExpression set as bioconductor already uses the first name. stela2502 ggplot2.Heatmap A R package to create heatmaps using ggplot2 trying to implement the functionallity of the gplots Heatmap.3 function. stemangiola ARMET ARMET stemangiola ARMET_BK ARMET_tc stemangiola dirReg_OLD Dirichlet regression stencila r Stencila for R stepcie sslcov sslcov stephLH apogee stephLH caractr caractr stephLH divr divr stephLH enquete.ip stephLH geographie stephLH graphr stephLH impexp stephLH importr stephLH source.maj stephLH temps stephLH webr stephan-koenig nranalysis Creates shiny apps from Netrunner data generated by nrdata stephan-koenig nrdata Getting and cleaning netrunner data stephanGit leistungstests leistungstests stephaneguerrier inclassdemo stephaniehicks HousemanSeq A tool to estimate the cell composition of whole blood in DNA methylation measured on any platform technology (microarray and sequencing). stephaniehicks methylCC R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms stephaniehicks qsmooth Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups. stephaniehicks quantro The R-package quantro is a data-driven test for global differences between groups of distributions which asses whether global normalization methods such as quantile normalization should be applied. stephaniehicks quantroSim This is the supporting data simulation package for the quantro R/Bioconductor package which can be used to simulate gene expression and DNA methylation data. stephaniehicks rafalabTips stephaniehicks test stephansanders wgsPowerTest A test version of wgsPowerCalc stephdesilva excelTransition stephdesilva forecastHelpR stephdesilva helpPlease Getting started in R with a little help from your friends. stephematician lifetable Australian lifetable data for R stephematician statsnbaR stats.nba.com endpoint interface for R stephematician trialcostR Trial Cost-Effectiveness in R stephenajacob TVApp A predictor of TV in R App stephenajacob recommendMovies Server side (R, OpenCPU) for Movie Recommender stephenhky RSSSpending Wrangling of Spending Data on Google Spreadsheet using R stephenhky RSpellCorrection Spell Corrector, an R Wrapper on the Scala implementation stephenhky rInfo R Package for Information Metrics stephens999 ashr An R package for adaptive shrinkage stephens999 dscr Dynamic statistical comparisons in R stephens999 etrunct R package to compute moments of truncated t distribution stephenslab EbayesThresh R package for Empirical Bayes thresholding and related methods. stephenslab LDshrink Computation of sparse LD (correlation) matrices based on Li & Stephens (2003) and Wen & Stephens (2010). stephenslab ebnm R package to fit Empirical Bayes Normal Means model. stephenslab flashr R package for Empirical Bayes Factor Analysis stephenslab flashr2 repo for refactoring flashr code stephenslab mashr An R package for multivariate adaptive shrinkage. stephenslab shinydsc R package and shiny application for exploring and visualizing dsc2 results stephenslab smashr Contains the SMASH package, which performs Gaussian and Poisson denoising stephenturner Tmisc Turner miscellaneous stephenturner annotables R data package for annotating/converting Gene IDs stephenturner msigdf Molecular Signatures Database (MSigDB) in a data frame stephenturner qqman R code for creating Manhattan plots and Q-Q plots for GWAS stephlocke DocumentDB R DocumentDB Interface stephlocke HIBPwned An R package for using the HaveIBeenPwned.com API stephlocke RMSFTDP R in the Microsoft Data Platform training materials stephlocke Rtraining R training materials developed by Steph Locke stephlocke beamertheme MRE of building a custom beamer template and theme stephlocke datasauRus The Datasaurus Dozen datasets stephlocke ezknitrTest Trialling ezknitr with some of my complex requirements stephlocke filofacts stephlocke mockaRoo Generate mock data with the Mockaroo API stephlocke myfirstproj stephlocke optiRum A useful package of helper functions from Optimum Credit stephlocke pRojects R package for making projects for various R activities stephlocke stephStyle Functions for making presentations in my preferred styles stephlocke tfsR Work with the TFS (git) source control system in R sterding powerEQTL R package for power analysis for eQTL study sterlo kineticWavelets stevedep MachineLearning stevedep r_package stevehoang assayr stevehoang pbayes stevehoang rppi steven-le-thien AMlimCNV stevencarlislewalker Rsquared R squared statistics from fitted models stevencarlislewalker TODO stevencarlislewalker bootR2 bootR2 stevencarlislewalker cleanPostalCodes Clean postal codes stevencarlislewalker ecoBayesIRT Utility functions for ecologists working with MCMCpack for item response theory modelling stevencarlislewalker lme4ord Ecological mixed-effects ordination with lme4 stevencarlislewalker multitable Multiple table data in R stevencarlislewalker popmoments Population-level moments stevencarlislewalker setup A personalized setup for R stevencarlislewalker subscript Consistent subscripting when working with objects of different shape stevencarlislewalker thermopic Predicting and Visualizing the Seasonal Availability of Thermal Habitat in Lakes stevenlecomber Rgeoprofile-1.1.0 Implementation of the Dirichlet Process Mixture (DPM) model of geographic profiling described in Verity et al. (2014). Note: for a new version of Rgeoprofile (2.0.0), introduced in Faulkner et al (Diversity and distributions, in press), use 'install_github(“bob verity/RgeoProfile”, ref=“version2.0.0”)'. For the development version of the model, … stevenpawley Diverge0 stevenpawley RSAGA5 Early version of a more R-like way of connecting SAGA-GIS to R stevenpawley Rsagacmd A package for linking R with the open-source SAGA-GIS stevenpawley sagacmd Early version of a more R-like way of connecting SAGA-GIS to R stevenranney AnglerCreelSurveySimulation Simulate a fisheries creel survey. stevenranney creelSurvey Deprecated. See `AnglerCreelSurveySimulation` stevenranney creelSurveyPaper Workflow for exploration of the AnglerCreelSurveySimulationPackage stevenranney ispiranteRanney package for Grandsla stevenrombauts r-package-countdown An example R package steventsimpson brokenCSV Generates report on comma-broken status of CSV(s), including broken rows and potential offending columns needing to be quoted in file. If path param is a folder, for readability a report named \file{csv_comma_broken_report.txt} is dropped into path folder and opened automatically to source pane. But if path param is only a file, then the report … steventsimpson googleformr Watch steventsimpson kleentex text cleaning functions steventsimpson lassie steventsimpson simsam somewhere between simulation and sampling steventsimpson valiData validates data imports in analysis pipeline steveped BMEA steveped NGS2R steveped driftSim steveped fastqcWrap steveped funsForLu steveped motifMatching steveped mySnps steveped spShortcuts stevetnz stevesRfunctions Miscellaneous helpful R functions steviep42 PWS weather-spy steviep42 youtube stewid EpiContactTrace A tool for facilitating livestock contact tracing. stewid SWmisc Collection of miscellaneous utility functions stewid SimInf A framework for data-driven stochastic disease spread simulations stewid gix An R package to search a Git repository stewid rmatio An R package to read and write matlab files stewid siminf A framework for stochastic disease spread simulations stewid xapr R bindings to the Xapian search engine stianlagstad chimeraviz chimeraviz is an R package that automates the creation of chimeric RNA visualizations. stijnmasschelein simcompl R package to simulate and test for complements stijnvanhoey wateRinfo R package to get data from waterinfo.be stillmatic MNIST Simple R package to load MNIST data as data.frame stillmatic cacheR Drop in caching for R functions stillmatic catcher Catcher: Drop in caching for R functions stillmatic comics load comics into R; be more productive, maybe stillmatic hoopr basketball data for R stillmatic leagueR Interface to League of Legends/Riot API stillmatic nistbeacon R wrapper for the NIST Randomness Beacon stillmatic quiltr R interface for Quilt Data Package Manager stillmatic stat471 utilities for Wharton STAT471/571/701 stix-global eutradeflows A validation algorithm for forest products trade data from Comext stla AV1R One-way random effects ANOVA stla Deming stla OwenFunctions Owen T-function and Owen Q-function stla OwenHaskell Owen functions, using the owen Haskell library stla OwenQ Rcpp implementation of the Owen Q-function and related functions stla OwenR Owen functions stla RV8 Javascript V8 functions stla brr Bayesian inference on the ratio of two Poisson rates stla dyadic Dyadic numbers stla expansions Expansions of integer and real numbers, and odometers stla floatExpansion Float expansion in integer base stla gmpadds stla hwriteXLSX An R package to write XLSX files. stla integerpartitions Partitions of integers stla jsonAccess Access directly to values and array elements in a JSON string. stla kantorovich Kantorovich distance between finite probability measures stla matrixsampling Simulation of matrix variate distributions stla myutils myutils stla ocpuHello stla ocpulogin Simple login with opencpu, using cookies stla ocpusimplereg An opencpu app for simple linear regression stla regtolerance Exact tolerance intervals for linear regression stla skewtableaux Skew tableaux stla tanhsinh Numerical integration via the tanh-sinh quadrature stla testPackageGitRStudio stlane calf Coarse Approximation Linear Function stm rquantae A toolbox for quantified aesthetics in R stmueller pathmapping pathmapping stnava ANTsR ... stnava ANTsRNpy translation between ANTsR and Numpy images stnava ITKR port of ITK to R stnava RHODLR HODLR matrix computations for R stnava RKRNS stnava cmaker port of cmake to r stnava itkImageR simple R and ITK project stolarczyk OpinieOBankach stork119 EntropyKNN stork119 parameter-estimation stoufferlab phyloint stp4 stp25APA2 Hier sind alle Funktionen vereint die für die Aufbereitung der Ergebnisse zuständig sind. stp4 stp25data Daten für die Beispiele stp4 stp25output Funktionen um HTML zu erstellen stp4 stpvers Laden der Funktionen von Statistik-Peter stpalan SPTools R package of various helpful functions. stpp-GitHub-community stpp Space-Time Point Pattern Simulation, Visualisation and Analysis stpp-GitHub stpp Space-Time Point Pattern Simulation, Visualisation and Analysis strakaps CTRM An R package for Continuous Time Random Maxima stranda adjustPhenotypes R package to adjust unpak phenotypes based on phytometers. Imported by multiple packages. stranda kernelPop2 stranda rmetasim rmetasim population genetic simulation engine stranda unpakDB R package that provides glue between unpakR and Rmysql. Could probably be subsumed into unpakR stranda unpakR R package for unpak database and data cleaning operations stranda unpakathon general package containing unpak data in R binary data files, utility functions, and vignettes stranda unpakathonJan2016 data from unpak in R format plus some vignettes strategicdataproject OpenSDPsynthR Codebase to generate simulated data for OpenSDP project. strayMat lineageDE strayMat warpDE strengejacke esc Effect Size Computation for Meta Analysis strengejacke ggeffects Tidy Data Frames of Marginal Effects for ggplot2 strengejacke ggtidyr Create Tidy Data Frames for 'ggplot' from Model Outputs strengejacke sjPlot sjPlot - Data Visualization for Statistics in Social Science strengejacke sjlabelled Working with Labelled Data in R strengejacke sjmisc Utility and recode functions for R and sjPlot strengejacke sjstats Statistical Functions for Regression Models strengejacke strengejacke Wrapper to quickly load the sj-packages. strnda Batman strnda RFun silly stuff doable in R strongh mongor A pure R MongoDB driver. strongh rbson A minimal BSON serializer for R. strongh smapr R package for working with SMAP (Soil Moisture Active Passive) soil moisture data. strongh telemetry R Shiny inputs for geolocation and sensor data strongio keanu Enter the model.matrix: tools for making modelling functions in R strongio stronger Internal R package for Strong-Analytics struckma synergyfinder stuartWagenius echinaceaLab useful functions for the Echinacea Project stuartWagenius mateable Tools to Assess Mating Potential in Space and Time stuartmichelle FieldworkCode No description or website provided. stuartmichelle notebook stuartmichelle stacks-master stuchly AnnoMass R package for MS annotation stuchly MetaMS R package for MS meta-analysis stuchly MetaMass R package for MS meta-analysis stuckinthe16th best.model Best Statistical Model student-t Anaquin R-package for statistical analysis of sequins student-t Bayesian student-t CancerSomatic student-t CurveFitting Statistical algorithms for curve fitting in R student-t DecisionTree student-t Normalization R package for normalization algorithms in bioinformatics student-t RAnaquin R-package for statistical analysis of sequins student-t RFinance R package for modelling in quantitative finance stufield White-Pine-Blister-Rust Full set of functions, subroutines, and data objects for the high-elevation white pine blister rust (WPBR) project, a collaboration between the Colorado State University Dept. of Biology/Mathematics and the USDA Forest Service stufield stuRpkg Small suite of useful functions, subroutines, and data objects for data set manipulation and analysis in R. stulacy epitab Produce contingency tables for use in epidemiology in R stulacy rprev-dev Development of the rprev R package for estimating disease prevalence through simulation stumash1 HorsePackage stveep crisp.icr suchestoncampbelllab survivR GWAS Survival Package in R suchitm tmvn sucurz testing testing suiji Arborist Modular, extensible implementation of the Random Forest (TM) algorithm. sujeetp97 bizhours An R Package to calculate time difference between two date time vectors in terms of business hours sujeetp97 compare-functions sulaxd YahooBidScrape sulaxd fruitRank 水果營養價格排行(Fruit Nutrition-Price Value Ranking) sulaxd teacheR sulekhaaloorravi myfirstpackage sulekhaaloorravi normdrawandfill An R package to draw normal distribution curve and shade particular regions sumbose iRF iterative Random Forests (iRF): iteratively grows weighted random forests, finds interaction among features sumitrahman perfman to do the performance management analyses for HR sumitrahman polr-back2raw to produce corrected probabilities for perf man analyses sumprain dbMapR Package connecting Shiny with Database sumprain dbfrontendR Frontend for Databases with Shiny sumprain shinyDBWidget Database Front End Widgets to work with Shiny sumtxt ags Tools to work with the German AGS sumtxt consilium consilium - Estimating multivariate probit models with partial observability in R sumtxt datatools Simple functions I tend to use a lot when working with data in R sumtxt itstools sumtxt neuchatel Tools to work with data from the Federal Statistical Office of Switzerland sumtxt wiesbaden R Client to access data from DESTATIS Germany sunny-zq INGRID InGRiD (Integrative Genomics Robust iDentification of cancer) sunny-zq PICS R Package "PICS": Pathwayguided Identification of Cancer Subtypes sunnyeesl BigLD sunnyrathee1 url.Fetcher get URL Data sunnyrathee1 urlFetcher sunsiyu accr read acceleration signal in R sunsiyu circler alles rund um Kreis sunsiyu featurer Bag of Tricks to Ease Feature Engineering sunsiyu optimalr an R package for understanding and solving optimization problems(math), can be used as a sub-package for other numerical problems. sunsiyu pdftools All the utility tools to make generate graphical pdf report/poster easier. sunsiyu testrcpp Play around with Rcpp sunsiyu timelyr Visualize data on cyclic basis sunstat cats superRhero4 SNPMClust R Package for Bivariate Gaussian genotype clustering and calling for Illumina microarrays, building on the package 'mclust'. Pronounced snip-em-clust. superdesolator NORTARA An implement of NORTA approach with bounding RA algorithm superjcd MBO2017 分析了中国近10年电影口碑（豆瓣评分）和高票房电影票房之间的线性关系 superjcd dbconntool 方便查看database里的内容 supersambo change.org An R wrapper for the change.org API supervan2 Testy Coursera Building R Packages - Week 4 suppechasper Dykifier suppechasper gmra suppechasper wordcor Shiny app for word correlation exploration sureshaks rcane R package for algorithm optimization surh AMOR Abundance Matrix Operations in R surh AMORglmnet glmnet model on Dataset objects surh RosetteDetector Rosette Detection with SVM surh wheelP Bacterial groups modulate plant phenotypes surmann ODEnetwork surmann ODEsensitivity surmann TopographicalSelection susanathey MCPanel Matrix Completion Methods for Causal Panel Data Models susanca powdist sushilashenoy h5matrix R package to making using rhdf5 more like bigmemory. sushilashenoy zoom.plot zoom.plot R package susjoh crimaptools R Library for preparing input files, running, and parsing output for the programme CRI-MAP. susjoh ggpedigree Draw nice pedigrees with ggplot2. susjoh pedantry Pedigree tools for R susjoh recomb.landscape Pilot study of evolution of recombination landscape modifiers susjoh simperSNP Simulates SNP data-sets for simple and complex pedigrees with recombination. susjoh wildsim Simulate and analyse datasets for genome-wide association studies using QMSim & GCTA sutigit21 SVAPLSseq SVAPLSseq-An R package to adjust for the hidden factors of variability in differential gene expression studies based on RNAseq data. suttonbm suttonbm-Rutils suyusung R2jags R2jags: Using R to Run 'JAGS' suyusung arm Data Analysis Using Regression and Multilevel/Hierarchical Models suzannefox burrow R package to return metadata about a dataframe suzannefox cats-test suzhesuzhe GEM suzhesuzhe efefe suzhesuzhe gittutor suzhesuzhe su-zhe-n1 suzhesuzhe test svanbelle multiagree Package to compare dependent and independent multilevel agreement measures svannoy lsr-package svannoy table1 Creates a Table of Descriptives Suited for MS-Word svazzole randomMatRices Generates random matrices in R svazzole sparseVAR R package / functions useful for generating and estimating sparse VAR models (SVAR) svazzole sparsevar R package for sparse VAR estimation svazzole svar R package / functions useful for generating and estimating sparse VAR models (SVAR) svdataman gin Gaussian Process Inference svdataman sour Cross correlation tools for R svdataman spritzer Search for periodic signals in noisy time series using Fourier methods svdataman tonic MCMC with R svenhalvorson AdancedR.notes Just taking notes on a book to help learn svenhalvorson AdvancedR.notes Just taking notes on a book to help learn svenhalvorson SvenR Sven's R stuff svenstringer genematrix sverchkov BaselineRegularization Implementation of Baseline Regularization by Zhaobin et al. (KDD 2017) targeted to work with OMOP databases sverchkov bionetwork R Project for Macine Learning of Biological Interaction Networks sverchkov r-ai-search R package implementing some basic AI search algorithms svkucheryavski mdatools R package for Multivariate Data Analysis svkucheryavski supure Spectral Unmixing with Pure Variables svolpers bootmi R package for bootstrapping imputed survey data sw1 themetagenomics sw1 theseus sw52099 ibuzz for ibuzz swager balanceHD Approximately balanced estimation of average treatment effects in high dimensions. swager causalForest DEPRECATED. See new generalized random forest package for up-to-date implementation. swager crossEstimation High-dimensional regression adjustments in randomized experiments swager nlpden Density estimation by quadratic programming swager optrdd Optimized regression discontinuity designs swager randomForestCI This package is DEPRECATED. Please use the package `grf` instead, which has built-in confidence intervals. swager rbm Tail index estimation with random block maxima swager semipartail Semiparametric tail estimation swaldroff DFCompare R Package for comparing dataframes swang3 timestudy This is a R package used to analysed data. swang87 atus R package for the American Time Use Survey 2003-2016 dataset swarm-lab GPSviewR swarm-lab ROpenCV Install OpenCV within R swarm-lab ROpenCVLite Utility package to install OpenCV in R swarm-lab Rvision Basic computer vision library for R swarm-lab axelRod Create and run Axelrod-like tournaments in R swarm-lab chainR swarm-lab editR A Rmarkdown editor with instant preview swarm-lab geneOptimQAD A quick and dirty genetic algorithm swarm-lab magicLamp WeMo Switch Smart Plug Utilities for R swarm-lab swaRm A R package to process and analyze collective behavior data swarm-lab teachR A package for R that bundles several Shiny web applications for educational use. swarm-lab trackR swarm-lab videoplayR A computer vision library for R swarm-lab videotrackR swatelena alumniDataTools A set of data cleaning tools useful for data analysts working at educational institutions swcoding ibuzz second try for first R package swd-turner check1 swd-turner reservoir reservoir: Tools for Analysis, Design, and Operation of Water Supply Storages swd-turner scenario R package for scenario tree construction swebb1 odyssey swebb1 quest Shiny App for Exploring Data swebb1 questplots swelbo Weph Simple daily rainfall and temperature or fungal spore release graph for a single oilseed rape cropping season swihart aaroseplot Area Adjusted Roseplots via ggplot2: "Aa rose by any other name would smell as sweet" swihart bridgedist An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) swihart event Event history procedures and models swihart gnlm Generalized nonlinear regression models swihart gnlrim Generalized Nonlinear Random Intercept Models in R aka a freestanding `repeated::gnlmix()` swihart growth Multivariate normal and elliptically-contoured repeated measurements models swihart lasagnar Lasagna plots in base and ggplot graphics in R swihart lnMLE_1.0-2 logit-normal by MLE: Heagerty 1999; Heagerty and Zeger 2000 swihart reduceblock R package. Easy Tools for Transmission Reducing and Transmission Blocking Calculations and Modeling swihart repeated Non-normal repeated measurements models swihart rmutil Utilities for Nonlinear Regression and Repeated Measurements Models swihart stable Probability functions and generalized regression models for stable distributions swihart wfpca Weighted Functional Principal Components Analysis swinersha DAFmap A tool to aid forest patrol prioritisation using SMART patrol observations and GLAD change alerts. swinersha PlantingPatterns Easily design planting patterns swinersha UAVforestR Measuring forest quality using UAV imagary and structure from motion data swirldev Case_Studies swirldev swirl :cyclone: Learn R, in R. swirldev swirlify 📚 A toolbox for writing swirl courses swish-climate-impact-assessment AP_monitor_NSW_1996_2015 AP_monitor_NSW_1996_2015 swish-climate-impact-assessment BiosmokeValidatedEvents bio_validated_bushfire_events swish-climate-impact-assessment ExcessHeatIndices Heatwave indices invented by John Nairn of the Aust Bureau of Meteorology swish-climate-impact-assessment awaptools Australian Water Availability Project tools (awaptools): a set of functions to aid downloading and reformatting swish-climate-impact-assessment rpostgrestools Tools for connecting and manipulating postgres from R swish-climate-impact-assessment rtamet R versions of TAMET meteorology data checking tools swish-climate-impact-assessment swishdbtools Database tools for the Scientific Workflow and Integration Software for Health (SWISH) project swnydick catIrt An R Package for Simulating IRT-Based Computerized Adaptive Tests sxz155 PFDA What the Package Does (Title Case) sxz155 test test syberia director Director is an R package for easily managing R scripts in a directory and treating them as "resources" syberia mungebits2 Atomic production-ready data preparation in R syberia stagerunner R package for parametrizing and executing linear sequences of actions syberia syberia Syberia: The development framework for R syberia syberiaMungebits2 Common feature engineering steps using mungebits2 syberia tundra Tundra provides a standardized container format for classifiers developed in R sylvainlebarillec RSEO Package to parse API from multiple SEO Tools / Platforms. sylvainlebarillec seotoolbox Retrieve data from Moz, SEMrush,.... sylvainloiseau drawExpression sylvainschmitt AnaBioCal R package to analyse New Caledonia biodiversity with SSDM package outputs sylvainschmitt Cite Rstudio addin to insert BibTex citation in Rmarkdown documents sylvainschmitt Paracou Paracou data set analysis, mainly for master 2 project on biodiversity indices. sylvainschmitt SSDM Stacked Species Distribution Modelling R package sylvainschmitt Uppangala Uppangala tree functionnal traits analysis symbolrush geocoder Geocoding, Reverse Geocoding and CH1903toWGS84 conversion symbolrush locationr LocationR is an experimental package that defines an S4 class 'location' and helps you managing such objects. With methods for ploting to .png and leaflet symbolrush osrmr symbolrush plot11R symbolrush simTimeR Package to handle DateTimes as integers (called simDateTimes) for the smooth handling insiede simulations symeneses RMode R package created as example syounkin ITHIM syounkin LD-LASSO syounkin RVsharing Computes estimates of the probability of related individuals sharing a rare variant. syounkin TravelSurvey syounkin Trioconductor R package for implementation of trio classes syounkin vcf2R An R package for conversion of vcftools output to R objects syrindi cms1 syrindi dataCleanFuns sysbio-curie ACSNMineR R package for enrichment/depletion analysis of ACSN maps and gmt files sysbio-curie BiNoM-3.0 sysbio-curie RNaviCell R interface for interaction with NaviCell maps sysbio-curie cBioFetchR R package to fetch data from cBioPortal using a list of genes. syspremed PanNETassigner syspremed PhenMAP syspremed exploBATCH A package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017). syspremed idSample syspremed intPredict Pipeline for gene selection and class prediction to identify robust genes syspremed polyClustR polyClustR: A pipeline to reconcile clustering solutions syspremed processTPM systats binoculaR systats exploR systats sy systats systats systematicinvestor SIT.blog systematicinvestor SIT.date SIT.date - Wrappers for Common Date Operations systematicinvestor flock Copy Flock package by Ivan Popivanov from https://r-forge.r-project.org/projects/flock/ systemincloud rly systemincloud sic-examples-ext-sp systemincloud sic-sdk-py systemincloud thriftr systeminsights mtconnectR systeminsights timelineR timeline visualizations in R syunhong seg R package 'seg' for measuring and visualising population segregation szcf-weiya sodaParallel Implement soda in parallel. szcf-weiya weiyaTSA The code for time series analysis. sztal smartr A comprehensive framework for smart and pretty reporting (R package) sztal stalaga My personal R code sztal tidymongo Handy wrapper around the awesome *monogolite* package that makes it even nicer! sztal wintersmithr R/Rmarkdown integration with Wintersmith sztup scarHRD szugat predfat Prediction methods for fatigue experiments t-finch tomrverse t-kalinowski RemTools Data Analysis for Soil and Groundwater Remediation t-kalinowski TKutils R package with functions useful during analysis script development t-kalinowski maglite magrittr-lite (just the pipes; sans aliases) t-kalinowski notr Collection of "not" predicates and set operators t-kalinowski yasp String functions for compact and expressive R code ta-cameron Cell-Profiles R package to generate ordered fluorescence profiles taalbrecht MultiEqOptimizer Creates d-efficient designs that are optimized across multiple supplied equations tabs11 mapregions mapping regions given a geojson file tabs11 mapregions2 mapping regions given a geojson file tabs11 regionsmaps mapping regions given a geojson file with coordinates tadaadata loldata Miscellaneous datasets provided for the lulz tadaadata qmtut Small R package for teaching purposes in undergrad psychology tadaadata tadaatoolbox Convenience tools for data analysis in undergrad psychology at Uni Bremen taddallas NHMpredict Query the NHM PREDICTS database taddallas metacom R package for the analysis of metacommunity structure taddallas rSpotify rSpotify is an R interface to Spotify's API. taekyunk paren Utility function to build a list of values for SQL IN taekyunk sql.helper Helper functions to build SQL queries in R tagas firstPackage test repo tagteam Publish R package Publish tagteam Refresh Refresh, build, rollback, check R packages tagteam SmoothHazard Smooth Hazard Models for Interval-Censored Data with Applications to Survival and Illness-Death Models tagteam SuperRanker Measuring agreement of lists tagteam heaven Fast routines for large registry data tagteam pec Prediction error curves for censored event history analysis tagteam phreg Proportional hazard regression tagteam pim Probabilistic index models tagteam prodlim Product limit estimation for survival analysis tagteam riskRegression R package for risk regression and prediction with censored data tagteam riskScore Scoring risk prediction markers and risk prediction models tagteam wally wally calibration plots tahir275 cats ff taichi43 SNscan Scan statistics applied in social network data can be used to test the cluster characteristics among a social network. taiyun corrplot Package corrplot is for visualizing a correlation matrix taiyun recharts An interface to ECharts takashisendo far takayasaito prcbench A testing workbench for evaluating Precision-Recall curves in R takayasaito precrec An R library for accurate and fast calculations of Precision-Recall and ROC curves takenakayoichi cofgeat Measuring Controlling Force of Gene Expressions along Time-course of expression profiles takenakayoichi tacs takeshi0406 rChatwork chatwork library for R talbano epmr Tools for Educational and Psychological Measurement talbano equate Observed-score linking and equating talbano qti talbano rwinsteps talegari fileplyr Perform chunkwise processing or split-apply-combine on data in a CSV talegari gaupya talegari modeldist in progress talegari pkggraph A consistent and intuitive platform to explore the dependencies of packages in CRAN like repositories talegari safer A consistent interface to encrypt/decrypt strings, R objects, files talegari sidekicks A Misc Set of Functions for Data Analysis talegari slimrec Sparse Linear Method to Predict Ratings and Top-N Reccomendations talegari visdist talentlens talentlens R package for TalentLens R&D talgalili HBP R functions for projects within HBP, SubProject 8 talgalili dendextend Extending R's Dendrogram Functionality talgalili dendextendRcpp Faster manipulation of dendrogram objects in R. talgalili edfun Creating Empirical Distribution Functions from data talgalili ggparci Parallel coordinate plot with added confidence interval bands talgalili heatmaply Interactive Heat Maps for R Using plotly talgalili heatmaplyExamples talgalili homework R package to Automatically Check R Homework Assignments talgalili installr Functions for installing softwares from within R talgalili partykit An image of a recent devel version of partykit talgalili randomurl talgalili temp talithafs dzVis-Package R Package for dzVis talkdatatome surveyQuestions tallulandrews M3D tallulandrews M3Drop tallulandrews Paper tallulandrews PoissonUMIs tallulandrews TreeOfCells tamaracha gametools tamartsi Aclust A-Clustering functions and analysis pipeline for methylation outcome data tamartsi BinomiRare R package implementing the BinomiRare test for rare-variant-disease association, for pooled and meta-analyses. tamartsi MetaCor An R package for stratified genetic association study, when individuals are correlated between the strata tambora-org tamboRapi Accessing tambora data in R made easy tammok PRISMA Protocol Inspection and State Machine Analysis tanerumit GAMSR Useful functions for interacting GAMS and R tanerumit SACSMA-R R implementation of the Sacramento Soil Moisture Accounting (SAC-SMA) model tanerumit hydrosystems Useful functions and wrappers for hydrology and water resources modeling tangshao2016 neoantigenR the repository for the neoantigen discovery tool taniaermak Great-South-African-Novel taniaermak NutritionR A simple (but effective) calorie counter! tanja819 TreePar tanja819 TreeSim tankwin08 waveformlidar waveform LiDAR data processing and analysis tannermlove avage avage tannermlove avages avages tannermlove hhfinal tannermlove profs profs tannermlove profsavgage profsavgage tannermlove williamsprofs williamsprofs tannerschubert 4800project tannerschubert mvdf4800 taotliu mMPA R package for implementing marker-assisted mini-pooling with algorithm tapj AlimIntest AlimIntest source code tapj IBSMicrobiota tapj biotyper an R package to biotype a community tarabrooch tbdatamodel Data model for tara brooch systems tarakc02 discoveryengine tarakc02 getcdw tarakc02 lazylist Implementation of lazy lists for R tarakc02 listbuilder tarakc02 pdquickmap Quick maps tarakc02 pinboardr A Pinboard API client application for R tarakc02 preprocessr tarakc02 puzzlr tarakc02 ratelimitr Rate limiting for R functions tarakc02 rbst Persistent balanced binary search trees in R tarakc02 rcrunchbase An R client for the CrunchBase API tarakc02 rmapzen R client for the Mapzen API tarakc02 stringcandidates tarakc02 udarutils Miscellaneous utilities taranu astro The R astro package tarball11 tarballutil tarballutil tatianatchoudjeuh SEROMOD tatsuyaasami lrem Linear Rational Expectations Model tatters soundgen Tools for acoustic analysis and parametric synthesis of harmonic sounds. Generates a combination of sine waves and noise filtered to add formants. The resulting sound can contain multiple harmonics, noise components, a flexible spectral envelope, effects like subharmonics or jitter, and one or more syllables. This can be used to synthesize vocalizations of animals or human voice. Soundgen can be used as a command-line tool in R console or as an interactive Shiny app. Note that soundgen is not intended as a text-to-speech engine. tatters soundgen_beta Tools for acoustic analysis and parametric synthesis of harmonic sounds. Generates a combination of sine waves and noise filtered to add formants. The resulting sound can contain multiple harmonics, noise components, a flexible spectral envelope, effects like subharmonics or jitter, and one or more syllables. This can be used to synthesize vocalizations of animals or human voice. Soundgen can be used as a command-line tool in R console or as an interactive Shiny app. Note that soundgen is not intended as a text-to-speech engine. tavareshugo MagicHelpR R package for QTL mapping in multiparent intercross (MAGIC) lines tavareshugo clustRna R package for gene clustering from RNA-seq data tavareshugo jellykmer R package for plotting jellyfish and KAT output tavareshugo windowscanr R package for sliding window analysis tavimalara rndvi rndvi: R package for downloading, extracting and visualizing long-term AHVRR NDVI taylerablake smoothcholesky taylerablake thin-plate-splines taylerablake vcmgcv Nonparametric covariance estimation via modified Cholesky decomposition using smoothing parameter selection engine of mgcv R package. taylo5jm edaAddins Functions and RStudio addins for exploratory data analysis in R taylo5jm interactions Functions for classifying interactions in gene expression data taylo5jm rmdtemplates https://github.com/taylo5jm/r-help/tr… taylorizing options.data taylorizing options.studies options trading studies functions for use with options.data package and shiny taylormez bodhi tbadams45 dtphase1 An implementation of Phase 1 of the Decision Tree Framework as a Shiny module. tbadams45 wrviz Create Visualizations for Water Resources tbalan dynfrail Fitting semiparametric dynamic frailty models tbalan frailtyEM The development version of the frailtyEM R package, that fits several types of shared frailty models tbates meta.now tbates umx Making Structural Equation Modeling (SEM) in R quick, easy, & powerful tbilab DESnowball snowball tbonne SocialIntegrationNet Network model for social integration tbonne moveStan Posterior checks for movement model building tbonne netTS An r package for generating network measures as time series tboomer pastepath tbrugz ribge R package for (down)loading data from IBGE (Instituto Brasileiro de Geografia e Estatística) tbrycekelly CCELIM An inverse modeling suite for my research in the CCE upwelling zone. Work in progress. tbuder CellTrans CellTrans is an automated tool to quantify stochastic cell state transitions between distinct cell states from FACS and flow cytometry experiments, to estimate equilibrium cell state proportions and the needed time equilibrium. tc RMongo R client to interface with MongoDB tcarpenter216 iatgen tcarpenter216 tomtools Tools Tom Uses tcash21 zendeskR R wrapper for Zendesk API tcassidey Betsy tcederquist ermhdfs R based HDFS tools that use standard print to write files and stream back contents to the inputs of the supplied utilities. tcgriffith cats2 tcgriffith hotspot2 tcgriffith lhdata personal scripts for the owaraisite project tcgriffith myrkit small scripts for daily tasks tcgriffith tcgaMut cancer related tchitchek-lab CDS CDS: A fold-change based statistical test for concomitant identification of distinctness and similarity in gene expression analysis. tchitchek-lab CytoBackBone CytoBackBone: an R package for merging of phenotype information from different cytometric profiles tchitchek-lab CytoCompare CytoCompare: an R Package for Computational Comparisons of Cytometry Profiles. tchitchek-lab MDSRefMaps MDSRefMaps: an R Package for Multidimensional Scaling Reference Maps and Projections tchitchek-lab SPADEVizR SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results. tchoffman bldgRpkg Building R Packages Coursera tcoopermont eqtools plot and map NOAA Earthquake data tcoopermont fars process data from far dataset tcoroller radR Radiomics analysis toolbox tcspears gitwords Tools for tracking word counts of commits made to git repositories tcspears neRtools Assorted R functions to aid extraction of named entities using the Apache OpenNLP libraries tcspears t1Fundamentals R package to read in financial fundamentals from Thomson One Banker excel files. tcspears tcspeaRs A package with misc. R functions that I use. tdanker REphys2 R package to read, display and analyse HEKA Patchmaster data tdeenes eegR A preliminary version of eegR: an R package to analyze EEG signals tdhock DiffPeaks Compute the difference between two peak tracks by matching tdhock PeakError tdhock PeakSegDP Peak detection via Constrained Optimal Segmentation (Dynamic Programming algorithm) tdhock PeakSegJoint Supervised segmentation for jointly finding peaks in several ChIP-seq samples tdhock PeakSegPipeline Supervised machine learning pipeline for peak calling in ChIP-seq data tdhock SegMeDP tdhock SparseSignals tdhock WeightedROC Fast, weighted ROC curves tdhock animint animated and interactive web graphics tdhock animint2 tdhock bams Breakpoint annotation model smoothing tdhock coseg Constrained Optimal Segmentation tdhock directlabels Direct labels for multicolor plots in lattice or ggplot2 tdhock flu-vaccine-response tdhock gganim Convert ggplots to animations tdhock ggplotly tdhock inlinedocs Convert inline comments and examples to Rd documentation files tdhock memtime Measure time and memory usage of R code tdhock namedCapture An R package for named capture regular expressions tdhock penaltyLearning Supervised machine learning for changepoint detection tdhock plotMakefile tdhock rankSVMcompare Support vector machines for ranking and comparing tdhock requireGitHub record GitHub R package versions tdhock revector Regular expression vectors tdhock testthatQuantity Record times for unit tests tdmcarthur grpSummary Produces Summary Statistics of Data by Groups tdn158 ElasticSynth Synthetic Controls for Causal Analysis using Elastic Net Regression tdo15 fars tdoehmen hypoparsr tdschenk GPActivity General physical activity summaries for epochal GENEActiv data tdschenk TSP-Project2 tdschenk activitypanels PiLR dashboard panels for activity_reference_app tdschenk dashtest tdschenk fitbitshim A shim for FitBit data to the PiLR system. tdschenk gaccel tdschenk pilr.app.plus.r tdschenk pilr.ema.r Dashboards for PiLR EMA data tdschenk pilr.liitah.r tdschenk pilr.nci333.r tdsmith HomebrewGA tdsmith logiclescale Logicle (biexponential) scale for ggplot2 tdsmith tdsheatmap tdsmith tdsmith.github.com teacher7738 AdapSamp teamcgc TARGETCloud https://teamcgc.github.io/TARGETCloud teamcgc ToolsAndWorkflows teamcgc cgcR Basic R package for working with the NCI Cloud Pilots teasdalm fqscreenr teasdalm intPCA test teasdalm rPCA R package for plotting SNP PCAs teasdalm rmindex rmindex is an R package that assesses and selects multiplex indexes from the Meyer and Kircher (2010) library protocol for use with illumina sequencing. techcyclist machina-r-package Machina Time Series Generation and Backtesting technOslerphile TRIP R package teco-kit jActivity2PMML code that allows requesting data from a jactivity database and build classifiers in form of PMML models upon it tectronics force-distribution-analysis.r-libs Automatically exported from code.google.com/p/force-distribution-analysis.r-libs tectronics google-motion-charts-with-r Automatically exported from code.google.com/p/google-motion-charts-with-r tectronics methylkit Automatically exported from code.google.com/p/methylkit tectronics r4ss Automatically exported from code.google.com/p/r4ss tectronics rdspl Automatically exported from code.google.com/p/rdspl teddybalan frailtoys teddybalan frailtyEM teekaay graphitr Graphite render API implementation in R teemour deltaR R package for calculating Delta R values in radiocarbon dating teisseyrep interactionInfo tejas-kale stockr tejaslodaya troop groupby. apply. multiprocess. at scale. telostat rdecaf DECAF API Client in R tempranillo1 IVsurfaceApp tempranillo1 sqlinserts Produces SQL inserts from a given dataset. tengfei-emory QuantNorm tengfei chromatoplots tengfei chromatosim tengfei commandr tengfei cwl.R R objects to CWL tengfei ggbio Grid and ggplot2 based visualization for biological data tengfei objectWidgetsQt qt based objectWidgets tengfei rabix.R R utilities for rabix tengfei sevenbridges CWL schema, Meta schema, API client and SDK helper in R tengfei visnab VisNAB tengmx ComplexDiff Differential binding estimation for protein complexes tengmx gcapc ChIP-seq peak calling with GC effects adjustment tengmx rnaseqcomp Benchmarks for RNA-seq quantification pipelines teofanan classprobtree R package for building and displaying classification and probability estimation trees tera-insights gtBase Base R Grokit Library tera-insights gtJson tera-insights gtSampling Grokit sampling library tera-insights gtStats tera-insights gtTranslator teradata-aster-field toaster Tools for Aster in R teramonagi RFinanceJ Get the data related to finance in Japan using variety types of data sources teramonagi RODBCDBI An implementation of R's DBI interface using ODBC package as a back-end. This allows R to connect to any DBMS that has a ODBC driver. teramonagi dpurifyr dpurifyr: A grammar of data preprocessing teramonagi fitbitr Interact with Fitbit data in R using Fitbit API teramonagi gigamonagi The package of me, by me, for me in R teramonagi healthplanet Wrapper package for healthplanet api teramonagi oandar R wrapper for the OANDA REST API (http://developer.oanda.com/rest-live/introduction/) teramonagi rOpenWeatherMap Get weather data from OpenWeatherMap(http://openweathermap.org/) teramonagi tdclientr Treasure Data API library for R teramonagi tidypoem1 Example package for Tidy poem teramonagi tidypoem2 Example package for Tidy poem teramonagi yokkunsr Love Yohei Sato tercen rtercen Tercen R api tercen teRcen Tercen R client api tercen tsneOperator tereom querysnmb querysnmb is an R package for exploring data bases from the SNMB project. terrste MyFirstPackage first R package terrytangyuan autoplotly Automatic Generation of Interactive Visualizations for Popular Statistical Results terrytangyuan dml R package for Distance Metric Learning terrytangyuan lfda R package for Local Fisher Discriminant Analysis terrytangyuan rflow (DESERTED) Moving towards https://github.com/rstudio/tensorflow tesera ktpi Kernel Topographic Indices tesera rlearn An R package which supports learn-cli. tesseradata datadr Divide and Recombine tesseradata trelliscope Detailed Visualization of Large Complex Data in R testing69 dummyProject testing69 testing testlnord rdstemplate Reproducible Data Science RStudio Project Template texty edata API wrapper for E-Data (spending.gov.ua) texty edecl API wrapper for declarations.com.ua tfojo13 RMP tfrescino FIESTA R package for generating estimates with Forest Inventory and Analysis (FIA) data tgac-vumc CGHbase tgac-vumc CGHcall tgac-vumc QDNAseq.dev tgac-vumc QDNAseq.hg19 tgac-vumc QDNAseq.mm10 tgac-vumc WECCA Weighted hierarchical clustering of array CGH data using (call probabilities) tgirke longevityDrugs Structures, properties and annotations of small molecules associated with longevity tgirke longevityTools Analysis tools for longevity research tgirke systemPipeRdata NGS workflow templates and sample data tgmwri wateres An R package to calculate characteristics and perform simulations for water reservoirs tgouhier biwavelet R package to conduct univariate and bivariate wavelet analyses tgouhier synchrony R package for computing spatial, temporal, and spatiotemporal statistics tgraf0 wortschatzR Retrieve frequency data from Leipzig Wortschatz tgrimes SeqNet An R package for simulating RNA-sequence datasets from regulatory networks tgvaughan BSLoader Easily load R scripts provided by BEAST 2 packages. th1vairam Common-Mind-Consortium-Causal-Regulatory-Networks th1vairam CovariateAnalysis thackl cats R-dummy-project thakurdev010 finalassignment2 thakurdev010 finalassignment3 thakurdev010 test1 thanasis-com PDMT Powerful Data Manipulation Tools tharte tutils Utility functions to make life easier thatsIch r-test-environment Playground with R the-Hull raptor Row And Position of Tracheid Organizer in R the-knife gpsinterp Interpolation of Longitude, Latitude and Direction with JOSM the-knife listchr List Columns to Character Conversion theGreatWhiteShark climex Extreme value analysis on climatic time series using R and Shiny theGreatWhiteShark vasp2R R package to import and plot results obtained by the DFT program VASP theMisdemeanorJusticeProject mjp theabjorn extremesampling Tests and model fitting for extreme phenotype sampling data theabjorn tumorevo Birth death trees for simulating tumor evolution theandyb R-KNIFE Initial Commit theasjblog tcx_package thebackman CDRalg thebackman filetools thebigez8 Ethan thebigez8 elo thebioengineer AxioSerializer An R package with the purpose of storing R objects inside databases theboocock CNVrdpermutations Generates permutations from DNACopy output data. theboocock blog theboocock coco Correlation conditional analysis. theboocock rehh Optimization and Gap adding to REHH theboocock sqltoday theboocock txtengine0.3 thechiselgroup RLodestone An R package that relies on sockets to connect an R session to Lodestone theclue facebook.S4 Facebook Graph API interface for R theclue tFileOutputGML theclue uptimeRobot UptimeRobot interface for R thecrosbyfan uwrfRegression An R package based on UWRF Math 327 - Applied Regression Analysis thedrunkteddy catTest First R Package test thedrunkteddy guestbook thefooj cassandrasimple R package to connect to Cassandra and do simple operations thegeologician ggprovenance R package for pretty plotting sediment provenance data thehyve heim-RInterface thehyve heim-tranSMART-ETL thehyve ohdsi-DeriveVariables R package for deriving variables from the OMOP Common Data Model. thehyve opencpuRScripts produceUI theislab destiny R package for single cell and other data analysis using diffusion maps theislab kBET An R package to test for batch effects in high-dimensional single-cell RNA sequencing data. theislab kbranches Finding branching events and tips in single cell differentiation trajectories theislab nbconvertR Vignette Engine wrapping Jupyter Notebooks thej022214 OUwie Estimates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes. thej022214 corHMM Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process. thej022214 hisse Hidden State Speciation and Extinction thelayc laycBullet Creates custom bullet charts thelayc laycDosage Repository of helpers functions to facilitate analysis of dosage thelayc laycEnrollment thelayc laycOutcomes Repository of helper functions to facilitate analysis organization wide outcomes thelayc laycPpm Package automating analysis of Promotor data thelayc laycPrepost thelayc laycReportCards This package helps extracting grades and other information from PDF report cards thelayc laycUtils Repository of helpers functions for analysis of LAYC database thelayc laycca thelayc layccaSyncCheck thelinkan tsl Time series handeling in R thelostscientist itunes itunes: R Package used to query Podcasts, Movies, Apps w/reviews straight from iTunes themains rdomains Classifying the content of domains themains virustotal R client for the Virustotal Public API. Virustotal is a Google service that analyzes files and URLs for viruses etc. themechanicalbear options.data options data and functions to support options.studies and options.shiny themechanicalbear options.studies options strategy package themechanicalbear tidyoptions tidy options data and functions to support options.studies and options.shiny theoldfather KaggleR A R toolkit for Kaggle competitions and general use theoroe3 MyFirstPackage My First Package thephilross beautiful-knitr-jekyll thephilross bsgenome.pf.v24 P. falciparum 3D7 PlsmoDB v24 BSgenome repo thephilross iver Phil's personal R functions thephilross seqLogo Fork of the seqLogo bioconductor package originally by Oliver Bembom thepks sapr SAP R Routine therbootcamp BaselRBootcamp2017 Materials for Basel RBootcamp 2017 therimalaya envelope therimalaya lplsReg LPLS Regression therimalaya simulatr Simulation of Multivariate Linear Model Data thermosilla testapi thermosilla tsfactors Package R para manipulación de dataframes de series de tiempo therneau survival Survival package for R thesmarthomeninja marketeR theugen moving_window A collection of functions for moving window interpolation in R, based on lm(). This repo is version 1.0, for tar.gz see mwindow. thevaa bmiproj thibautjombart OutbreakTools Basic Tools for the Analysis of Disease Outbreaks thibautjombart adegenet adegenet: a R package for the multivariate analysis of genetic markers thibautjombart adephylo exploratory analyses for the phylogenetic comparative method thibautjombart apex Phylogenetic Methods for Multiple Gene Data thibautjombart bmmix Bayesian multinomial mixture model thibautjombart contactsim Simulate Disease Outbreaks with Contacts thibautjombart dibbler Investigation of food-borne disease outbreaks thibautjombart eatR Food stuff in R thibautjombart fancysamplers fancy samplers thibautjombart geograph Interfacing GIS layers and spatial graphs thibautjombart hellorivm thibautjombart outbreaker Disease outbreak reconstruction from epidemiological and genetic data thibautjombart outbreaker2 Disease outbreak reconstruction from epidemiological and genetic data thibautjombart palettonr R package to import and handle palettes from paletton.com thibautjombart treescape Exploring tree diversity thibautjombart vimes Visualisation and monitoring of epidemics thierrygosselin assigner Population assignment analysis of genomic dataset (e.g. GBS/RADseq) using R thierrygosselin grur grur: an R package tailored for RADseq data imputations thierrygosselin pcadapt pcadapt thierrygosselin radiator RADseq Data Exploration, Manipulation and Visualization using R thierrygosselin stackr stackr: an R package to run stacks software pipeline thierrygosselin sunnier Set of functions to make your day a little sunnier when working with cloud compute engine like Amazon and Google, all inside R. thijsjanzen STEPCAM Stepwise Community Assembly Model repository for CRAN-R thiloklein dispersion R package: Dispersion statistics in small samples thiloklein matchingMarkets Analysis of Stable Matchings in R :: thiloshon Biodiversity Centralized data retrieval, cleaning, management and backup tool for biodiversity data thirdwing RcppDL thirdwing RcppGraphChi R interface to GraphChi (in very beginning stage) thirdwing RcppMLPACK thirdwing RcppMLPACK1 thirdwing nimble nimble package from http://r-nimble.org/ thisirs quizR Creating, correcting and exporting quizzes in R for Moodle. thiyangt colmozzie R package for dengue cases and climate variables in Colombo Sri Lanka thiyangt mozzie R package for dengue cases in Sri Lanka thk686 dotdotdot Assists with passing the elipsis argument to subfunctions thk686 mvcwt An R package for wavelet analysis of multivariate time series thk686 odeintr An R package for integrating differential equations in C++ thk686 pipestreamr An R library for bidirectional communication over pipes thk686 rgdal2 R bindings to GDAL/OGR thk686 rpg An R package for reading from and writing to a PostgreSQL database thk686 using Imports Objects thl-mjv euromomo Developement branch for the EuroMoMo hackathon thl-mjv momoStan Mortality monitoring models using Stan thl-mjv thlcol THL Color Scheme thlytras FluHMM Hidden Markov Model for influenza sentinel surveillance thlytras Rivets A collection of useful standalone R functions thlytras rfgfs Flight planner and companion R package for FlightGear thlytras rspiro Spirometry equations for R thmcmahon aes Datasets from the Australian Election Study as an R Package thmcmahon ozTaxData thmcmahon superrugby R package of Super Rugby match results thmcmahon taxFunctions Functions to calculate Australian taxes and transfers thmild benchden R package benchden: 28 benchmark densities from Berlinet/Devroye (1994) thmild diffractometry R package diffractometry: Baseline identification and peak decomposition for x-ray diffractograms thmild histogram R package histogram: Construction of regular and irregular histograms with different options for automatic choice of bins thmourikis personalToolkit Personal toolkit - R package thohag pupilParse pupilParse R library thohag pupilPlot thohag readSMI Reads SMI eye-tracking files. thom82 myQCA contains packages I use for QCA thom82 whassocr Implementation of Whitehead's association network analysis thomas-hillebrand bcdataprep #TODO add description thomas-hinterecker Ragbu thomasblanchet gpinter R package for generalized Pareto interpolation thomased colsci Visual Modelling in R thomased natpalette All-natural colour palettes for R thomased pattern colour pattern/geometry analysis in R thomasgstewart ahsqc thomasgstewart tangram.pipe thomasgstewart tgsify thomashusken trem trem thomaslindsay86 Dan thomaslindsay86 GA thomaslindsay86 ManuGA thomasp85 CHtools A list of diverse functions for CH thomasp85 FindMyFriends Fast alignment-free pangenome creation and exploration thomasp85 MSGFgui A gui overlay and extension for MSGFplus thomasp85 MSGFgui-release Release branch of the MSGFgui package thomasp85 MSGFplus An MSGF+ interface for R thomasp85 MSGFplus-release A link to the release version of MSGFplus thomasp85 MSsary Mass spectrometry data in R thomasp85 PanVizGenerator Create your own PanViz visualizations thomasp85 anomaly Detecting those outliers thomasp85 curry Partial Function Application with %<%, %-<%, and %><% thomasp85 densityClust Clustering by fast search and find of density peaks thomasp85 fiery A flexible and lightweight web server thomasp85 firesafety thomasp85 ggHeat A ggplot2 based heatmap function for eSets thomasp85 ggforce Accelerating ggplot2 thomasp85 ggraph Grammar of Graph Graphics thomasp85 hierarchicalSets Scalable Set Visualization using Hierarchies thomasp85 lime Local Interpretable Model-Agnostic Explanations (R port of original Python package) thomasp85 masochist For some reason I’m doing all of this from my phone thomasp85 msQC A QC module to evaluate MS data quality in R thomasp85 mzID An mzIdentML parser for R thomasp85 pRodigal Prodigal through R thomasp85 particles A particle simulation engine based on a port of d3-force thomasp85 patchwork The Composer of ggplots thomasp85 pepmaps R package for quantitative peptidomics thomasp85 pepmapsGUI A GUI layer for the pepmaps package thomasp85 peptideMethods A collection of methods to work with peptides in R thomasp85 pipeplotter Syntactic ggplot2 Sugar for a Tidy World thomasp85 psimod.db A database package for modification information thomasp85 reqres Powerful classes for http requests and responses thomasp85 routr Routing of Web Requests in R thomasp85 shinyFiles A shiny extension for server side file access thomasp85 tidygraph A tidy API for graph manipulation thomasp85 tweenr Interpolate your data thomnific ecxplor Economic complexity explorer library for R. thomnific ecxplorappdata Data for ecxplor thongphamthe PAFit PAFit source thongphamthe mcPAFit Estimating PA function from a single snapshot thospfuller rgroovy rGroovy thozh912 732A37 thozh912 Lab5 Web api thozh912 Lab6 thozh912 Lab7 thozh912 ML-Lab-2 thozh912 ML-lab-1 thtrieu edmsyn an R package that synthesize data thunder001 GeomHurr ti243 cellity No description or website provided. ti243 phd_thesis tiagodc TreeLS R functions for processing individual tree TLS point clouds tiagomendesdantas Rspotify This package allows you to connect R to Spotify's API and get information about Songs, Albums, Artists and Users. tiagomendesdantas spotifyR tiagomendesdantas tiagomendesdantas.github.io tianjialiu HyAirshed-RPackage HyAirshed: A R package to approximate daily and seasonal airsheds of point coordinates using the HYSPLIT trajectory model and to estimate fire intensity within airsheds tianqingliu cel2num tianqingliu xlW2L tianwei-zhang tianweiR collection of helpful functions in R tiberius7777 R-numtheory R package that provides number theory functions tiberius7777 quant_r Often used functions and routines in R tidyverse blob A simple S3 class for representing BLOBs tidyverse broom Convert statistical analysis objects from R into tidy format tidyverse dbplyr Database (DBI) backend for dplyr tidyverse dplyr Dplyr: A grammar of data manipulation tidyverse forcats 🐈🐈🐈🐈: tools for working with categorical variables (factors) tidyverse ggplot2 An implementation of the Grammar of Graphics in R tidyverse glue Glue strings to data in R. Small, fast, dependency free interpreted string literals. tidyverse googledrive Google Drive R API tidyverse googlesheets4 Google Spreadsheets R API (reboot of the googlesheets package) tidyverse haven Read SPSS, Stata and SAS files from R tidyverse hms A simple class for storing time-of-day values tidyverse lubridate Make working with dates in R just that little bit easier tidyverse magrittr R package to bring forward-piping features ala F#'s |> operator. Ceci n'est pas un pipe. tidyverse modelr Helper functions for modelling tidyverse purrr A functional programming toolkit for R tidyverse readr Read flat files (csv, tsv, fwf) into R tidyverse reprex Render bits of R code for sharing, e.g., on GitHub or StackOverflow. tidyverse rlang Low-level programming tools for R tidyverse stringr A fresh approach to string manipulation in R tidyverse tibble A modern re-imagining of the data frame tidyverse tidyr Easily tidy data with spread and gather functions. tidyverse tidyselect A backend for selecting functions of the tidyverse tidyverse tidyverse Easily install and load packages from the tidyverse tiernanmartin begin tiernanmartin miscgis A Collection of Functions and RStudio Add-ins for GIS Analysis in R tiernanmartin shiny.test A Shiny Application contained within an R package (for testing) tiernanmartin shmodules A collection of Shiny modules for data exploration and visualization tierneyn footprintr A simple implementation of csv-fingerprint in R tierneyn ggmissing enhanace ggplot - allow for missing data tierneyn neato A set of function that I use somewhat regularly tierneyn testing No description or website provided. tierneyn visdat A package to assist in visually testing a dataset tierneytim FIACH Development version of FIACH tilltnet egonetR R Package for importing and analysing ego-centered-network data. Please find all further information here: tillweigt largetvpvar tillweigt stratdev tilmandavies sparr Spatial (and spatio-temporal) relative risk estimation in R tim-dim rlytics Provides often used functions and themes for working with R tim-salabim Rtography cortographical utilities in R tim-salabim advr2 tim-salabim maRburg testing installation tim-salabim metvurst meteorological visualisation utilities using R for science and teaching tim-scharf binary timble countdown An example R package timcdlucas EMMLi A Maximum Likelihood Approach To The Analysis Of Modularity timcdlucas INLAutils Utilities for INLA in R timcdlucas MetapopEpi Package for running metapopulation simulations timcdlucas encounteR Estimate animal density and abundance using random encounter models timcdlucas paleomorph Geometric Morphometric Tools for Paleobiology timcdlucas palettetown Pokemon themed colour schemes for R. timcdlucas riskr riskr R package for risk (and other game) simulations. timchurches genes2anzctR Mapping genes/mutations to trials in the Australian Nez Zealand Clinical Trials Registry, using R timelyportfolio R-source-for-timelyportfolio-blog timelyportfolio angular_d3 timelyportfolio comicR htmlwidgets for comic (xkcd-like) R timelyportfolio d3hierR d3 hierarchichal layouts in R starting with treemap timelyportfolio d3hiveR R htmlwidget for d3-hive timelyportfolio d3r d3.js helpers for R timelyportfolio d3treeR R htmlwidget for d3.js treemaps timelyportfolio d3vennR R htmlwidget for d3.js venn diagrams from Ben Frederickson (@benfred) timelyportfolio e2d3R e2d3 in R timelyportfolio eventdropR EventDrops d3.js timeline as R htmlwidget timelyportfolio explodingboxplotR d3.js exploding boxplots for R as an htmlwidget timelyportfolio exportwidget R htmlwidget to export other htmlwidgets and SVG as png timelyportfolio flowtypeR R htmlwidget for flowtype.js timelyportfolio functionplotR R htmlwidget for function-plot d3.js library timelyportfolio gamer games as htmlwidgets for R timelyportfolio gifrecordeR R htmlwidget to record animated gifs client side timelyportfolio googlefontR R helpers for using Google Fonts timelyportfolio htmlwidgets_spin R htmlwidget for spin.js timelyportfolio imageR intense-images htmlwidget for R timelyportfolio katexR bring the power of KaTeX to R with htmlwidgets timelyportfolio listviewer R htmlwidget to view lists timelyportfolio loryR lory slider htmlwidget timelyportfolio mapshaper_htmlwidget R htmlwidget for mapshaper timelyportfolio materializeR R htmlwidget for materialize framework timelyportfolio navr R htmlwidget for responsive-nav.js timelyportfolio parcoords R htmlwidget for parallel-coordinates d3 chart timelyportfolio parsetR R htmlwidget for d3-parsets from Jason Davies timelyportfolio plottableR htmlwidget for Plottable from Palantir timelyportfolio rChartsExtra collection of custom and alpha libraries to bind with rCharts timelyportfolio rCharts_dygraphs all development has moved to https://github.com/danielkrizian/rChartsDygraphs/ timelyportfolio rCharts_systematic timelyportfolio rNotebook_zoomooz timelyportfolio radialNetworkR R htmlwidget for Interactive (Searchable, Zoomable, Collapsible) d3 radial network timelyportfolio railroadR Railroad Diagrams for R timelyportfolio rcdimple htmlwidgets for rCharts + dimple timelyportfolio rd3fc d3fc financial components for R timelyportfolio reactR React for R timelyportfolio sankeytree timelyportfolio shotsignR Peter Beshai's d3 shooting signatures for R timelyportfolio sortableR R htmlwidget for Sortable.js timelyportfolio stockchartR react-stockcharts as a R htmlwidget timelyportfolio sunburstR R htmlwidget for sequence sunburst timelyportfolio svgPanZoom R htmlwidget for svg-pan-zoom.js | if you plot it, it will zoom timelyportfolio sweetalertR R htmlwidget for sweetalert by @t4t5 timelyportfolio timelineR R htmlwidget for interactive d3.js timelines using d3.layout.timeline timelyportfolio tooltipsterR R htmlwidget for tooltipster timelyportfolio trailr D3-trail htmlwidget for R timelyportfolio treebar R htmlwidget for Chris Given Zoomable Treemap Bar timelyportfolio vegaliteR vega-lite htmlwidget for R timelyportfolio vueR vue.js for R timelyportfolio waypointR skeleton for htmlwidget based off waypoints timflutre hypred Simulation of Genomic Data in Applied Genetics timflutre rgs3 R package wrapping the GS3 program for genomic selection (http://genoweb.toulouse.inra.fr/~alegarra/). timflutre rutilsfastqc R package with utilitary functions to handle output from FastQC. timflutre rutilstimflutre Timothée Flutre's personal R package (+ parts from other contributors) timflutre timTestRcppGSL An R package to test RcppGSL timfolsom hei R Package for Calculating Healthy Eating Index (HEI) Scores timknut asremlParallel ASreml R-wrapper timknut cigeneR Different useful R functions for bioinformaticians timknut gg.ldplot Plot a pairwise LD matrix from vcftools with ggplot2. timmsm svystat A modern reimplementation of the survey package which is more suitable for programming timnewbold GISOperations timnewbold MadingleyRegimeShifts timnewbold StatisticalModels Functions for generating, analysing, checking and plotting statistical models timoast methylQC Quality control for methylome data timoklimmer documentdbr Use Azure DocumentDB from R timpeters82 DMRcate-devel devel git for DMRcate timpeters82 DMRcate-release Release version of DMRcate for Bioconductor 2.14 timpeters82 consensus R package for modelling interlaboratory test methods for genomic data timriffe DDSQLtools DemoData SQL tools. Wrappers for the DemoTools package to work with UNPD SQL data format timriffe DemoTools Tools for the evaluation, adjustment, and standardization of demographic data timriffe TR1 Materials for an MPIDR Technical Report on reading HMD and HFD data into R direct from web to console timtrice HURDAT HURDAT is a dataset of best-track analysis for Atlantic and NE Pacific cyclones. This R package scrapes and parses that dataset. timtrice Hurricanes Get archived data of past and current hurricanes for the Atlantic and eastern Pacific oceans. timtrice IPPS Hospital Charge Data from Data.gov timtrice NCDCStormEvents NCDC storm events database from 1950 to mostly current (couple months delay) timtrice WPRmd Small R library to publish R content to WordPress using RWordPress, knitr timtrice drat drat data repositroy timtrice rrricanes Web scraper for Atlantic and east Pacific hurricanes and tropical storms timtrice rrricanesdata Supporting dataset for R package rrricanes timvink mpscraper A R package for webscraping advertisements from Marktplaats.nl timydaley CRISPhieRmix tingtina NanoStringDiff tinino tinotools my functions tinnaing347 bRema tinoswe InterLAB tinu-schneider assignDataFrame Assign a Name to a data frame tinyheero CHL26predictor An R Package for the CHL 26 Gene Predictor tinyheero cellrangerRkitextra Additional functions to support the 10X Cell Ranger R Kit tinyheero cnvkitutils R Package Containing Utility Functions for cnvkit tinyheero cofeatureR Plot Cofeature Matrices tinyheero deutils R Functions for Working with Differential Expression tinyheero mgsautils tinyheero oncosnputils An R package for post-processing the results of OncoSNP tinyheero picardtoolsutils An R Package for Analyzing Picard Tool Outputs tinyheero shmutils An R Package for Analyzing Somatic Hypermutation Patterns tinyheero snpeffutils R package with utility functions to handle SnpEff results tinyheero survutils Functional Programming Principles to Iteratively Run Cox Regression tinyheero tinyutils R package with utility functions to help with data analysis tinyheero titanCNAutils An R package for working TitanCNA Results tinyleap LatentStage tinyleap adalasso tipdub ZestFinance tipdub makersquare titaniumtroop rweightlifting R package for viewing weightlifting progress and custom program planning tix994 Linreg tjburns08 Sconify Group CyTOF data into overlapping k-nearest neighborhoods for enhanced single-cell visualizations. tjconstant disp.plot 2D polygon plotting of irregular spaced matrix data with aribitary transformations tjconstant fitocracy R import and analysis for fitocracy data tjconstant grapheneSPP Calculation of Surface Plasmon Polariton dispersion in Graphene tjconstant lumerical R utility functions for data exported from Lumerical tjconstant mlfilms Calculating the optical response of multilayer films using the transfer matrix method tjconstant photonMonkey Misc convenience functions for use in photonics. tjconstant rindex tjconstant thor Optical response of various thorlab components for use in R tjconstant thor2 Optical response of various thorlab components for use in R tjconstant ultrafastMonkey Misc Tools for work in Exeter University's Ultrafast Laser Lab tjh48 clusterSeq tjmahr KnitrJekyllHelpers Functions to help with blogging tjmahr LawEdwards2015 Eyetracking data from a mispronunciation experiment (Law & Edwards, 2015) tjmahr McMurrayHorstSamuelson2012 tjmahr WrapRmd RStudio addin for wrapping RMarkdown paragraphs tjmahr adventofcode17 My solutions (R) for Advent of Code 2017 tjmahr bootmatch Bootstrap group matching tjmahr fillgaze Helper functions for interpolating missing eyetracking data tjmahr littlelisteners R functions for working with eyetracking data tjmahr lookr Scripts for looking-while-listening eye-tracking experiments tjmahr pathr tjmahr polypoly Helper functions for orthogonal polynomials in R tjmahr printy Tools for pretty-printing numbers in RMarkdown reports tjmahr retrace An implementation of the TRACE model of word recognition tjmahr rprime R package for dealing with Eprime txt files tjmahr textgrid Parse and manipulate Praat TextGrids in R. tjmahr tjmisc TJ's R Miscellany tjmahr tristan Some helper functions for dealing with RStanARM models tjmassaro ssga Shotgun Stochastic Genetic Algorithm in R tkaiser86 dyncomp Complexity of Short and Coarse-grained Time Series tkatsuki FlyceptionR R scripts and utilities for Flyception data analysis tkatsuki dipr Digital Image Processing with R tkhdyanagi LATEerror An R package to implement the generalized method of moments inference to estimate the local average treatment effect for misclassified treatment tklebel crosstabr Cross tabulation with HTML and Markdown output tklebel fuehrerschein Auswertungen einer Befragung zum Thema "Haben Sie einen Führerschein?" tklebel jstor Import journal data from DfR (JSTOR) tklebel motorcycler Import and analyze data for second hand motorcycles tklebel tkmisc Package for R tkonopka ExpCube R analysis of cell/stimulus/expression data tkonopka MultiPattern Multi-pattern discovery in R tkonopka RGeneticThesaurus Analysis of thesaurus-annotated genomic variants tkonopka Rcssplot R plots styled with css tkonopka Rpipelines Components for R scripts and pipelines tkonopka Rthresholdout R implementation of reusable holdout tkonopka famr Families of multiple regression models tkonopka shrt Functions for short R code tkostas komics An R package for omics data analysis tkostas viewMQ An R package to for exploratory visualization of MaxQuant output tlafarge alphashape3d The package alphashape3d presents the implementation in R of the alpha-shape of a finite set of points in the three-dimensional space. tlamadon RcppSimpleTensor R library that creates compiled functions from simple tensor expressions tlamadon asy-tutorial tlamadon ggtable publication quality tables generated with R tlamadon jinjit tlamadon mopt Parallel Derivative Free Moment Optimization for R tlamadon mpeccable R package for constrained optimization of functional equation problems tlamadon rkiv R pakcage that helps with creation of intermediate dataset, results and figures while keeping track of dependencies tlamadon rutils a package version of my R utility functions tleblevecIMP ICgeostats Exercise material for the geostatistical course at Imperial College tleblevecIMP TransPGS From multi gaussian simulations to indicator transiograms tlevine 2014.thomaslevine.com tlevine camayak-public tlevine capitol-words-spending tlevine chainsaw tlevine ckan-plugins tlevine cutjs tlevine dada-static tlevine data-music-brainstorm tlevine dep tlevine facebook-chat-patterns tlevine filesurvey tlevine fsvy tlevine geom_doner tlevine geom_taco tlevine geom_tacofancy tlevine haskore-sandbox tlevine iafcu tlevine krounq tlevine learn-to-scrape tlevine liburn tlevine map-files tlevine mapsengine-export tlevine mdoow tlevine netgain-ticket tlevine nprm Node-packaged R modules tlevine open-data-census tlevine paljs tlevine predictgrades tlevine question2 tlevine r-dat.frame tlevine r-markdown.list tlevine r-pretty.barplot tlevine rbaudio tlevine red-flags tlevine rehsape tlevine rhpgl tlevine ripe-atlas-anycast tlevine rrawaudio tlevine rripeatlas tlevine scarsdale_assessment_database tlevine scraperwiki_local_dummy tlevine socrata-metrics-api-csv tlevine speaker-on-off-switch tlevine toilets tlevine tuneR tlevine worldbank tlevine zbwooh tloux tldr Functions to simplify RMarkdown reporting tlumip swimctr Oregon SWIM v2.5 Commercial Transport (CT) Model tlumip swimr Visualizations and Reports for SWIM tm4ss tmca.classify R package for proportional classification and active learning tmatta apdesign Implementation of an addative polynomial design matrix tmatta ilsasim Simulate large scale assessment data tmatta lsasim Simulate large scale assessment data tmcd82070 MRA Capture-recapture R package tmcd82070 Rdistance An R package to conduct distance-based analyses tmcd82070 SDraw An R package for drawing spatially balanced samples tmcd82070 SDrawNPS A version of the SDraw R package developed for the National Park Service tmcd82070 tex2rmd An R package that converts LaTex files into Markdown files. tmeeha setset Sensor Time Series Error Tools tmelliott bsm BSM: Bayesian Selectivity Modelling tmills-usgs EflowStatsLite Refactoring of EflowStats tmills-usgs Under-Ice Processes data from SonTek up-looking radar instrumentation. Uses non-linear regression for parameter estimation and discharge calculation with automated diagnostics and graphics generation. tmills-usgs WQ-Review_refactor reactoring of WQReview tmills-usgs modelArchive Package to aid in preparing and reviewing model archives for USGS R models. tmills-usgs natTrends Package to support censored seasonal kendall trend analysis for national surface-water trends team. tmlunde OMaWa Open Malaria Warning tmooney101 slacktest003 tmsalab iccbeta A function and vignettes for computing an intraclass correlation described in Aguinis & Culpepper (2015) . This package quantifies the share of variance in a dependent variable that is attributed to group heterogeneity in slopes. tmuetze Bioconductor_RCy3_the_new_RCytoscape Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST tnaake MetCirc tnagler VineCopula Statistical inference of vine copulas tnagler cctools Tools for continuous convolution in nonparametric estimation tnagler jdify Joint density classification tnagler kdecopula Kernel smoothing for bivariate copula densities tnagler kdevine Kernel density estimation based on vine copulas tnagler naglr Custom ggplot2 theme and colors tnagler vinecopulib-R R interface to the vinecopulib C++ library tnagler vinereg D-vine quantile regression tnedu acct Frequently used accountability functions tnt198785 rqsamplesize Sample size for quantile regrssion toamitesh FinalRPackageProject toamitesh Week4Assignment Part of Coursera Course tobiasgf lulu r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding) tobiasgf uniquity tobiaskley forecastSNSTS Forecasting for Stationary and Non-Stationary Time Series tobiaskley forecastSNSTSexamples Data examples for the R package 'forecastSNSTS' tobiaskley quantspec Quantile-based Spectral Analysis of Time Series tobiasmuetze ThreeArmedTrials tobiasmuetze gscounts tobiasmuetze varmap tobiasvonderhaar pepvaR tobiasziegler openaustralia OpenAustralia API Bindings for R tobitproject tobitdiag tobyjohnson gtx Genetics ToolboX R package today-is-a-good-day yelpR An R package for the yelp API todortzolov Rsample todortzolov TopFeaturesPackageR tohweizhong Quicktune An R package for quick tuning of xgboost models (WIP) tohweizhong RegressTune tohweizhong Standard Standard workflow for data analytics (WIP) tohweizhong redhyteR A hypothesis mining package in R (decommissioned) tokami TropFishR Tropical Fisheries Analysis with R tokami TropFishR.select Selectivity explorations of single-species fish stock assessments in a data-poor context. tokdar qrjoint R Package qrjoint: Joint Estimation of Quantile Planes toledobastos GuardianR Provides an interface to the Open Platform's Content API of the Guardian Media Group. It retrieves content from news outlets The Observer, The Guardian, and guardian.co.uk from 1999 to current day toledobastos IterateNetworkMetrics toledobastos SocialMediaMineR A Social Media Search and Analytic Tool toledobastos iterateNetwork IterateNetwork simulates stochastic and targeted node or edge removal based on network attributes, randomly, and by degree distribution tollpatsch bahnscheduleR A R wrapper for the DB Fahrplan API tollpatsch cbpR An API wrapper for the Congressional Bills Project API. tollpatsch efaR This package allows to query the EFA XML API with an easy query. tollpatsch mappeR A R wrapper for the Google Maps API tollpatsch rzeit-v2 Remake of the ZEIT ONLINE API wrapper rzeit tollpatsch rzeit2 Remake of the ZEIT ONLINE API wrapper rzeit tom-n-pdx lpSolveS4 Generic Object-oriented linear solver front-end for lp_solve tomasbarcellos RCEPAL pacote de R para download de dados da CEPAL tomasbarcellos RSIDRA tomasbarcellos valorar Pacote para ler e pesquisar notícias no jornal Valor Econômico tomasgomes RTraCe Read TraCeR output to R and plot tomasgreif dplyrOracle Oracle backend for dplyr (R package) tomasgreif mondrianr R Package - generate Mondrian schema for PostgreSQL table or R data frame tomasgreif myhelp tomasgreif vintager Vintage analysis in R for PostgreSQL data tomasgreif woe R Package - calculate Information Value and WoE (Weight of Evidence) tomaskrehlik frequencyConnectedness Spectral decomposition of spillover measures tomasukun prescribr Analysis of industry payments to physicians and their prescribing. tomateba clipR detection and comparison of RBP binding sites from CLIP related data tomateba p53retriever R package to locate and display p53 putative response elements on a DNA sequence tomauer sptrees Spatial partitioning with quadtrees tomauer stemhelper Functions and vignettes describing the use of Spatiotemporal Exploratory Model products. tombishop1 LeadR A Simple Tool for Pb-210 CIC and CRS modelling tombishop1 itraxR Parse and Process Itrax Core-Scanner Data tomcat123a tinker tomcopple coffeestats Package of functions for getting coffee data (personal use) tomdrake String2AdjMatrix A package to create adjacency matrices in R tomeburk MyFirst A test tomeburk MyFirst2 You guessed it tomeburk MyFirst3 Third time is a charm? tomeburk MyFirstWork1 Try newest instructions at work tomeburk Rtest Example from http://www.r-bloggers.com/create-r-package-rstudio-github-devtools/ tomeburk lm.retran Compute back-transformed regression fit statistics tomesch aws-auth tomesch elasticsearch Simple Elasticsearch client for R tomesch npm-aws-lambda tomesch salestool-auth tomhopper numbr Convenience functions for working with scientific numbers. tomhopper randr Convenience functions for generating random numbers, especially based on distribution characteristics from expert judgement. tomhull airsea Tools for studies in air-sea gas exchange tomhull dotfiles tomis9 cats tomis9 decisionTree A simple R package for growing and plotting decision trees. tomis9 markovClust Markov clustering algorithm tomjscox GPPFourier Estimate Gross Primary Production from O2 time series tomjscox Tides Characteristics of water level time series in intertidal systems tomlamphier predtext Predictive Text Project tomli1234 FamilyCohort FamilyCohort tomliptrot predictshine Interactive predictions in R with shiny tomliptrot tlml tomliptrot tomr tommasojulitta FieldSpectroscopyCC R package for Characterization and Calibration of spectrometers tommasojulitta FieldSpectroscopyDP tommasorigon DLSBP An R package for computing the DLSBP model tommasorigon DMtools Watch tommasorigon LSBP An R package for computing the LSBP model tommasorigon PhDPack tommybonobo CSD-A-Tasks tomor14 Exam tomor14 Examst522 Examst522 tomshafer bcf Simulate N-player competitions via Approximate Bayesian Computation tomvar bundling bundling nowy tomwhoooo scca_3.0 Desperate attempt to reproduce a package thats built before R 3.0 tonedivad FIEmspro tonedivad GRMeta tonedivad metaboGoS tongyin9002 MICMIC Methylation regulation network inference with Conditional Mutual Information based PC-algorithem toni-1991 Delta R package that calculate Delta coefficient of agreement between two raters toniprice fulcrum Sample size determination (SSD) and power computation via simulation toniprice jute Collection of miscellaneous R utility functions toniprice powsim tony-stone arp Evaluation of Ambulance Response Programme data tony-stone rclahrc HES data processing for CLAHRC AAA project tony-stone rclosed Data preparation for the closED study tonyfischetti assertr Assertive programming for R analysis pipelines tonyntang cccx Credit Card Currency Exchange Rate tonyxuantong EnBirdWDI tonyxuantong FinalProject tonyxuantong WDImap tonyxuantong migbirdscount topazse tse.sql SQL connection hooks topazse tse.utils TSE Utility functions topazse tse.viz Functions for visualizations and graphs topepo AmesHousing Ames IA Housing data from De Cock (2011) topepo caret caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models topepo desirability S3 classes for multivariate optimization using the desirability function by Derringer and Suich (1980) topepo parsnip A tidy unified interface to models topepo recipes A preprocessing engine to generate design matrices topepo rsample Classes and functions to create and summarize different types of resampling objects topepo tidyposterior Bayesian comparisons of models using resampled statistics topepo yardstick Tidy methods for measuring model performance topherconley spacemap A conditional graphical model for learning high-dimensional networks. topolskib sciezkiCNK Pakiet sciezkiCNK torda385 GoogleGeoAPIShiny A Shiny app to use the GoogleGeoAPI API package torda385 torsaseuclid Advanced R Programming Euclidian Algorithm torebre abcProject An R-package containing code relating to my bachelor project. toreerdmann TPDT R package for a sort of "functional t-test". Transforms raw data from two groups into functional data and performs a procedure generalized from the common t-test to test for a difference between the two groups of funtions. toreerdmann edar R-package for Eyetracking Data Analysis in R (edar) tosar ejercicio_curso tosar paquetersuma tosar paqueterutad tosar paqueterutadoeoeoe tosar paqueterutadosde toshi-ara CIplot A function to plot confidential interval for such as 'htest', 'glm' (logistic regression only!) and 'posthocTGH' {userfriendlyscience} objects. toshi-ara makedummies A function to make dummy variables for R. This package was registered at CRAN on 2017-01-02. toshi-ara myrstan Models and function for RStan tospig rtospig tothuhien mySnps No description or website provided. tourko tastyworks R package that extracts transactions from Tastywork's confirmation files townleym mMisc Just a few miscellaneous, very non-robust convenience functions I've written along the way townleym mSpatial A few convenience/wrapper functions built atop rGeos toygur WAVElogy R package to multivariate wavelet coherence analyses tpall SRP Stable retrospective power tpall boulder Download data from Estonian Health Statistics Database tpall entrezquery Query entrez databases using R, returns document summaries as data frame. Wrapper function around esearch and esummary etools. tpall gapmin_er tpapak flow_contribution tpepinsky interplot.medline This is a wrapper function for the R package interplot (Solt and Hu) that creates marginal effects plots with median lines. tpepler EPIC.SimInf Extension of the SimInf R package for members of EPIC tpepler RcmdrPlugin.harbin Rcmdr Harbin Plug-In tpepler cpc R package for common principal component (CPC) analysis tpepler harbin R package for Harbin quantification for RT-qPCR data tpepler nonpar R package for non-parametric analysis tpepler ssaCUSUM R package for SSA-CUSUM method tpepler theolib Collection of auxilliary functions for R tpetzoldt FAmle R package for maximum likelihood fitting of distributions to hydrological time series tpetzoldt rodeoExt tpgjs66 cchaidR tpgjs66 cchaid_kim CHAID for continuous variable tpilz HydroBayes Collection of R functions with sampling algorithms for use in a hydrological context employing Bayesian statistics tpilz LUMP R package: Landscape Unit Mapping Program tpilz WasaEchseTools R package: tools for processing the WASA-SED model and the WASA engine of the ECHSE simulation environment tpilz lumpR Landscape Unit Mapping Program for R tpoisot digitize A R package to extract data from scatterplots tpq atomic An R package to efficiently calculate the topological overlap measure in C++ tpq catmap Modified code from the catmap package, edited to work with R version 3.2 tpq codenames An R package to implement a Codenames-like word association game with AI tpq eek An R package to pre-process bulk EKG data and detect the physiological peaks tpq exprso An R package to rapidly build and deploy machine learning algorithms on high-dimensional data tpq glitchr An R package to make glitch art by shifting, sorting, and transforming pixels tpq miSciTools An R package to simplify miscellaneous and cumbersome bioinformatic pipelines tpq peakRAM An R package to monitor the peak RAM used by R expressions and functions tpq propr An R package to calculate proportionality between vectors of compositional data tpq yuck An R package to add something like list comprehensions to for-loops in R tqchen07 ctool Function to create descriptive tables traets idefix R-package to create efficient choice designs for the MNL model, and adaptive designs for the MMNL model. traets mnldes R-package to create efficient choice designs for the multinomial logit model trahelyk trahelyk_pkg Trahelyk package trainorp BayesianGLasso trainorp MetabClass trainorp SeqAlign traitecoevo Revolve Adaptive Dynamics toolkit for R traitecoevo baad.data Access data in baad traitecoevo callr Simple interface for calling R traitecoevo dockertest Run tests in docker containers traitecoevo experimentr root traitecoevo fungaltraits traitecoevo ksi Finding Distinctive Clades with the Komogorov-Smirnov Importance Statistic traitecoevo phyndr Match tip and trait data traitecoevo plant Trait-Driven Models of Ecology and Evolution 🌲 traitecoevo rrqueue R + Redis queues traitecoevo stateliner Code and documentation for connecting stateline and R traitecoevo taxonlookup A versioned and dynamically updating taxonomic lookup table for land plants traitecoevo traitfill Generalises the approach in https://github.com/richfitz/wood traitecoevo versioned_data_template This is the minimum set of tools to set up and distribute a versioned dataset via an R package traitfindr traitfindr This repository contains the source codes of the R package traifindr (in development) trallard trallard_R R package containing functions for personal use ⚡️ 🍪 trambakbanerjee fusionclust An R package for clustering and feature screening in large scale cluster analysis. tranlm lrecCompare Comparison of Double Robust Methods with Positivity Violations (R-package) tranlm lrecImpact Code for LREC paper tranlm reproducibilityR R package and LaTeX presentation on reproducibility tranlm rpsftm Rank Preserving Structural Failure Time Model (R-package) tranlm tdR Teradata R package to make scripting powerful interactions with Teradata easier tranlm testprogramming transbioZI Gimpute An efficient genetic data imputation pipeline translational-oncogenomics scanbr R package containing functions useful for processing SCAN-B data transmart RInterface A R module with packaged functions to query the tranSMART database directly transportfoundry censusr Get data through the US Census API traversc trqwe Performance oriented statistical metrics and utility functions in R travisbyrum clinkr Composable Command Line Interfaces in R travisbyrum lineuper Wins prediction for NBA lineups tremenyi climatematchR An R package to match climate information from specific locations to the world at different time periods. trenchproject TrenchR Code contributions for TrenchR initiative trenchproject biophysweb Interactive tool to explore body temperatures trenchproject microclimRapi Microclim.org R API Toolkit trendct ctnamecleaner Connecticut Town Name Cleaner trendlock brush Functions to tidy `bsts` models trendlock fetch Get useful things trendlock find File path MGMT trendlock mal Tidytext analysis of Malcom Turnbull's public speeches trendlock speeches Tidytext analysis of Malcom Turnbull's and Bill Shorten's speeches trestletech RCache Demonstration of package-wide caching variables in R packages. trestletech RpiR R on Raspberry Pi trestletech ShinyDash Dashboard implementation for Shiny trestletech cartogram trestletech clippR https://trestle.shinyapps.io/clippr/ trestletech dallasgeocode trestletech plumber Turn your R code into a web API. trestletech rgl A copy of the RGL SVN repository trestletech rydn R package to interface with the Yahoo! Developers Network trestletech sample-repo trestletech samplepkg trestletech shinyAce Integrating the Ace editor with Shiny. trestletech shinyGlobe An integration of RStudio's Shiny with Google's WebGL Globe platform trestletech shinyRGL Shiny wrappers for RGL (WebGL) trestletech shinyStore R package that adds HTML5 Local Storage support to Shiny trestletech shinyTable An R package that integrates Handsontable with Shiny trestletech shinyTree Shiny integration with the jsTree library trevorld argparse R package providing a command line optional and positional argument parser. trevorld findpython R package currently designed to find acceptable Python binaries. trevorld getopt R package providing basic command line optional argument parsing trevorld ledgeR R package for importing data from plaintext accounting files trevorld optparse R package providing a commandline optional argument parser trevorld tldutils An R package of some utility functions I've written treysp spillr R package of miscellaneous functions triadsou RcmdrPlugin.KMggplot2 R Commander Plug-in for Data Visualization with 'ggplot2' trias-project trias R package with functions for TrIAS tribuzio ABLXtag Group of functions we use to analyze Microwave Telemetry X-tags. This is adapted from the analyzepsat package, updated to run in R>2.15 tribuzio Ageing_interlab tridentasf assessment tridentasf attribute tridentasf attributeImportance tridentasf attributeimportanceJLI tridentasf segmentation trife gbs triglian asqr Analyze [ASQ](https://github.com/ASQ-USI/ASQ/) datasets trilnick bunchr Analyze bunching in a kink or notch setting trinker BGmisc trinker CAinterprTools R package for visual aid to the interpretation of Correspondence Analysis trinker CAseriation Package for contingency table seriation by means of Correspondence Analysis trinker DIFdetect trinker Regression Tools for regression analyisis trinker SOdemoing trinker acc.ggplot2 A collection of tools to extend and speed up coding for repeated uses of plotting functions that use ggplot2. trinker acc.roxygen2 Functions to make roxygen2 even easier to use (note these functions are designed for windows users and may be extended to Mac) trinker cleanr trinker clustext trinker decideR trinker digit A package for formatting digits in formal reports trinker discon Tools for analyzing discourse connectors in text trinker dummy A place to do dumb things trinker embodied A package that provides video analysis tools for embodiement related tasks trinker entity trinker formality trinker gantt trinker gmailR send email with attachments in R trinker gofastr trinker gtrend A wrapper for the GTrendsR package for work that interests me. trinker hangman hangman game trinker hclustext trinker hilight trinker kmeanstext trinker lemmar trinker lexicon A data package containing lexicons and dictionaries for text analysis trinker lexr trinker mapit trinker metaDAT trinker numform tools to assist in the formatting of numbers and plots for publication trinker pacman A package management tools for R trinker pacmanDependencies trinker parsent trinker parser trinker pathr trinker pax trinker plotflow A group of tools to speed up work flow associated with plotting tasks. trinker pysty trinker qdap Quantitative Discourse Analysis Package: Bridging the gap between qualitative data and quantitative analysis trinker qdap2 trinker qdapDictionaries Word lists used by the qdap package. trinker qdapRegex qdapRegex is a collection of regular expression tools associated with the qdap package that may be useful outside of the context of discourse analysis. trinker qdapTools qdapTools is an R package that contains tools associated with the qdap package that may be useful outside of the context of text analysis. trinker quantemp A basic quantitative analysis workflow template. trinker rdir Functions to work with directories trinker readability trinker regexr Readable Regular Expressions trinker regextools A regular expression documentation, testing, and storage system. trinker regexusa Common U.S. Regular Expressions trinker reports An R package to assist in the workflow of writing academic articles and other reports trinker rnltk trinker sentDraw trinker sentimentr Dictionary based sentiment analysis that considers valence shifters trinker shinyTurkTools trinker shortcut trinker sotu Presidential State o the Union Addresses trinker stansent trinker syllable A Small Collection of Syllable Counting Functions trinker synonym trinker tagger trinker talkstats A repository for talkstats members trinker termco Regular Expression Counts of Terms and Substrings trinker termcoLite trinker testing trinker textclean Tools for cleaning and normalizing text data trinker textcleanLite trinker textcode trinker textcorpus trinker textfeatures trinker textmod No description or website provided. trinker textmundge trinker textplot trinker textprep trinker textproj trinker textreadr trinker textreduce trinker textreport trinker textshape Tools for reshaping text data trinker textstem trinker validateMake trinker vote trinker wakefield Generate random data sets trinker wikidata triphosphate AMS597 Respository for AMS 597 R Package tristaaan AI-DeliveryMan Delivery man, or woman! tristaaan DeliveryWoman For ai tristanbains rFootballAnalysis tritritri trir trnnick TStools R tools for time series trnnick mapa MAPA package for R trnnick nnfor trnnick tsintermittent trobinj trtools R package of miscellaneous functions and data sets for my statistics courses. trochet metabf R package to perform Bayesian meta analysis on GWAS summary statistics trooper197 tccox Treatment Choice Cox Model trophia analyser Analysis tools for New Zealand fisheries catch and effort data trosendal addition A repository to illustrate a sample R package trosendal giraffe A method for viewing diffs of a csv file in a git repository trosendal hlt A package to make html and maybe latex tables from dataframes trosendal kilde R Package for Bayesian source attribution trosendal mingle plot spatiotemporal network data trosendal trosendal.github.io troyhill NitrogenUptake2016 troyhill Pastebin-API A Pastebin API for R troyhill VulnToolkit A R package containing web scrapers and analytical tools to aid analysis of coastal and estuarine datasets. troyhill coreCT Programmatic analysis of sediment cores using computed tomography imaging truittll barcodetrackPython trulia choroplethr choroplethr simplifies the creation of choropleths (thematic maps) in R trulia choroplethrAdmin1 Contains an Administrative-Level-1 Map of the World trulia choroplethrMaps Maps for the R package choroplethr trulia rUnemploymentData Data and Functions for dealing with US Unemployment Data in R trutscheld SWDsampling trutscheld samplingData sampling data for SWD and other study designs trybik streambugs R package for R and C code with mechanistic model of growth, death, and respiration of different taxa dependent on environmental factors, in particular of macroinvertebrates (bugs) in rivers (streams). trytrytry1369 FitHiC Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. tsahota NMproject Turning R/RStudio into a NONMEM IDE tsahota NMprojectAZ tsahota TidyProject tsahota tidyproject Create standardised analysis directories with private package libraries and links to external code repositories tsahota tidyprojectAZ tsangyp StreamThermal tsangyp cat testing push R package to github tscheypidi magclass R Data Class and Tools for Handling Spatial-Temporal Data tseaward hello tsellam Ziggy Ziggy, a R package to describe tuples tsellam findviews A view generator for multivariate data tshakurov ECI R package, which сalculates ECI, some other indexes (PCI, proximity et.al.) and builds product space. tshmak General General functions for my daily use tshmak Rplink Routines to call PLINK from R tshmak SNPdata R package for analysing SNP-related data tshmak lassosum LASSO for GWAS with summary statistics tshmak myfftools My tools for use with the R `ff` package tshmak mysimtools Tools for conducting simulation studies in R tsieger idendr0 Interactive Dendrograms (backport of idendro to Tcl/Tk) tsieger idendro Interactive Dendrograms tsieger tsiMisc tslumley bigQF R package for large quadratic forms tslumley bigchisqsum tslumley hextri hexagonal binning with triangular sub-binning tslumley xkcdcolors R package for color names from XKCD color survey tsungwu JFE R Package: Just Finance and Econometrics tsungwu iClick Package of R tsungwu pdR Package of R ttimbers SKAT ttimbers convertemp R package to convert temperatures between Celsius, Kelvin, and Fahrenheit ttimbers distransam R package to create random samples with equal N's across different sample groups ttimbers foofactors What the Package Does (one line, title case) ttnsdcn forecast-package Automatically exported from code.google.com/p/forecast-package ttraboue FrissC3 ttraboue FrissMsgBox ttraboue FrissNotie ttraboue FrissSwitch ttraboue frissIntro ttraboue frissbutton ttriche BCPeakR Xing et al's BayesianChangePoint peak caller. Currently requires patching to install as an R package. ttriche artemisData processed HDF5 files for artemis examples ttriche bayesCC Bayesian Consensus Clustering, packaged up from code by Eric F. Lock ttriche chromophobe a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R ttriche dendRix port of Dendrix (Vandin, Upfal, & Raphael, Genome Res 2011) to R ttriche dma Dynamic model averaging (development repo) ttriche groupedPMA new penalties for PMA (supervised/multiple CCA) ttriche oldGridExtra solve a problem I'm having for BioC2015 and elsewhere ttriche rGammaGamma Gamma convolutions for background correction ttriche regulatoR R package to detect correlated changes across phenotypes by sparse filtered regression ttriche roxpkg demonstration of weirdness observed in roxygen2 5.0.0 ttriche simpleSampleSearch a trivial R package to search GEO and SRA without the huge hassle of the NCBI interfaces tubuliferous bedanno tubuliferous methplot Exploratory plots of genomic methylation data. tubuliferous weaverfunctions Some handy functions by Ben. tudo-r BatchExperiments BatchExperiments: Statistical experiments on batch computing clusters tudo-r BatchExperimentsAnalysis tudo-r BatchExperimentsMlr tudo-r BatchExperimentsSOO tudo-r BatchJobs BatchJobs: Batch computing with R tudob wfg tuliobaars FARSpackage Graphs on a map of the USA accidents by State uses data from US National Highway Traffic Safety Administration tuomaseerola onsetsynch Onset synchrony functions turf-reserves MPAtools R package to simulate turf reserves turf-reserves mpa.tools R package to simulate turf reserves turfeffect MPAtools R package to simulate turf reserves turgeonmaxime covequal Provide test for equality of covariance matrices between two multivariate normal samples and valid p-values for high-dimensional data turgeonmaxime dplyrBioc Extends `dplyr` to the DataFrame class turgeonmaxime kernReg R package for Kernel Regression turgeonmaxime multiKernel turgeonmaxime pcevKernel turgeonmaxime pcevRcpp No description or website provided. turgeonmaxime rootWishart Computes the distribution function of the largest root in the single or double Wishart setting turi-code rpsclient R client library for predictive services tuxette RNAseqNet R package 'RNAseqNet' tuxette SOMbrero tvatanen microbiomics Tools for microbiome data analysis tvatter RVineForest tvatter copulaDAG tvatter eecop tvatter gamCopula Repository of the gamCopula R Package tvatter gmmcop Copula-based solutions to moment equations tvatter mdmd A R Package for Multivariate Discrete Mixture Distributions tvatter opLabR tvatter tvmisc A R package with a collection of functions that I often use tvganesh QCSim Test tvganesh QCSimulator This simulates a 5 qubit Quantum Computer tvganesh TotalConteol tvganesh ckt11 Ckt tvganesh ckt15 Test1 tvganesh cricketr This package can be used to analyze performances of cricketers based on stats from ESPN Cricinfo tvganesh pkg tvganesh tvganesh.github.io tvganesh yorkr This repository contains the code and documentation for cricket package yorkr tvpolushina Scoretest tvpolushina test test score tvw146 SMMA tw1118 myutilitypackage helper functions in R language for better efficiency tw1118 test testing r package twang2218 pmap Process Map Visualization in R twang2218 pmv Process Map Visualizer in R twbattaglia MicrobeDS A repository for large-scale microbiome datasets, formatted for phyloseq twbattaglia btools A set of R functions that help faciliate a lot of tedious processing twbattaglia geneExpress R functions for NanoString analysis tweed1e fakedata An R pkg to create fake data. tweed1e idiosyncratics tweed1e matchtools Tools for firm name/address matching tweed1e werfriends Friends IMDB data. twitter AnomalyDetection Anomaly Detection with R twitter BreakoutDetection Breakout Detection via Robust E-Statistics twjacobs oasdir r package for Social Security Estimates (Old Age, Survivor, and Disability Insurance -OASDI) twobrosonecode juicioFinal twolodzko beforeafter Monitoring Consistency of R Objects twolodzko bookkeeper Monitoring Consistency of R Objects twolodzko boots Bootstrap/resampling based time-series forecasting twolodzko equi Package for equipercentile equating twolodzko extraDistr Additional univariate and multivariate distributions twolodzko improper Enjoy robust beauty of improper models twolodzko kernelboot Smoothed bootstrap and functions for sampling from kernel densities twolodzko lolplyr Adapting dplyr for lists-of-lists twolodzko misster Simple tools for dealing with missing values twolodzko twextras Make R great again! txm676 gambin the gambin R package txm676 mmSAR2 The mmSAR2 R package txm676 nos The 'nos' R package txzhou SimulateBML R package to simulate BML traffic model. txzhou mixtureReg R package to fit mixture of linear regressions. tyler-l-moulton rMR tylerhether HMMancestry R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data. tylerhether fbgenotyper R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data. tylerjrichards Suave tylermorganwall adjustedcranlogs Removes daily shared downloads amongst CRAN packages and re-download/CRAN mirror spikes associated with package updates. tylermorganwall skpr Generates and evaluates D, I, A, Alias, E, T, G, and custom optimal designs. Supports generation and evaluation of mixture and split/split-split/N-split plot designs. Includes parametric and Monte Carlo power evaluation functions. Provides a framework to evaluate power using functions provided in other packages or written by the user. tynesjo fars_functions_tst test package with Travis continuous integration tyrannomark bldR tystan deltacomp Functions to analyse compositional data and produce confidence intervals for relative increases and decreases in the compositional components tz-lom Resonance-Rproj tz-lom Resonance.R3 tz-lom ResonanceEngine tz-lom bcidat tz-lom eyelinkReader tzerk ESR R package 'ESR' for plotting and analysing ESR spectra in dating applications tzerk ESReport A Collection of Functions to Create Reports for Electron Spin Resonance Dating Applications tzerk RLumShiny A collection of shiny applications for the R package Luminescence. tzerk gammaSpec A collection of functions to analyse gamma spectra tzerk projBrowser A simple RStudio addin to browse project files tzerk roughness A collection of R functions related to soil surface roughness tzimiskes causality tzoltak EWDdane tzoltak EWDogolny tzoltak EWDraport tzoltak EWDrspo tzoltak EWDskale tzoltak EWDskalowanie tzoltak EWDwskazniki tzoltak KTT tzoltak MLASZdane tzoltak daneIBE Funkcje pomagające przetwarzać dane sondażowe pomiędzy formatami CSV, DTA i SAV. tzoltak disprop R 'disprop' package: functions to calculate different disproportonality measures tzoltak zadaniaRegresja u6yuvi Imputation_RPackage uc-bd2k CLEAN uc-bd2k CLEAN.Hs uc-bd2k CLEAN.Mm uc-bd2k CLEAN.Rn uc-bd2k GRmetrics uc-bd2k GRmetrics_old uc-bd2k KEGGlincs Overlay KEGG pathway edges with data [L1000] in R and visualize in Cytoscape via cyREST uc-bd2k KOdata Companion L1000 knock-out data set package intended for use with KEGGlincs uc-bd2k gimmR R package for genomics data analysis using infinite mixture models uc-bd2k shinyLi uc-cfss rcfss Functions and datasets relevant for Computing for the Social Sciences ucd-cwee cweeShiny R package contating common functions used in the development of water-energy data apps ucd-cwee energyintensity Network-based modeling of embedded energy (energy intensity) within a water distribution system. ucd-cws wq-heatplot R package for creating Water Quality Heatplots ucd-ipo agroft Agricultural Field Trial Statistics Package ucd-ipo aip-analysis Agricultural Field Trial Statistics Package ucl-cls mcs-acc Millennium Cohort Study - Accellerometry Study ucl-cssb autoGate Automatic gating of singlet bacterial population from flow cytometry data ucl-cssb fluoroClust Cluster a flowFrame in to on and off populations by one fluorescence channel ucl-cssb wavelength2colour Convert a numeric wavelength to an RGB or Hex colour uebvhir HeatMapUEB Package to plot a Heatmap from a datamatrix uebvhir anaStatsUEB Statistical analysis function - Statistics and Bioinformatics Unit (UEB - VHIR) uebvhir biom Construcción y validación de un biomarcador a partir del paquete CMA de R uebvhir extCG uebvhir installifnot uebvhir plotPCA2 Hace una gráfica de los dos primeros componentes de un dataset uebvhir quickAnalysis uebvhir uebVennDiagram Venn and Euler diagrams from lists of elements (top tables), creating the corresponding table of shared and non-shared elements ueno-tr flysleep ugcd gait R package to organize GAIT data ugcd gaitTools Tools to analyze GAIT ugcd solarius An R package to interface SOLAR ugcd tic TIC score ugurcanlacin Lab3 ugurcanlacin Lab4 ugurcanlacin Lab6 ugurcanlacin Lab7 ugurcanlacin nasaAsteroid uhh-lt senseasim uhlitz dallianceR genome browsing with dalliance uhlitz idconv Convert gene identifiers uhlitz incucyter uhlitz pstars R package to display p-values with asterisk symbols uhlitz readFastQC R Package to read in FastQC reports uhuggins EVS uhuggins politics working package uhuggins test ujaen-statistics GWRM Generalized Waring Regression Model ujaen-statistics RcmdrPlugin.GWRM Plugin for GWRM package ujjwalkarn mlearn ujjwalkarn xda R package for exploratory data analysis ukbiobank-MentalHealth-Genetics ukbiobanker UK Biobank data manipulation routines ukgovdatascience eesectors ⚠️ Prototype R package for the creation of the DCMS Sectors Economic Estimates statistical release ukgovdatascience govstyle Theme for use with ggplot2 for creating government style visualisations ukgovdatascience issue_testing ukgovdatascience statspicker Demonstration package for easy cross-tabulation of categorical data. ukgovdatascience testpackage ulicheva Coursera4 ultinomics CERsmartmeter ultinomics xmlExtras Tools to look at xml data. Has functions similar to the `tree` command line tool (xml_get_tree, xml_view_tree). Allows one to find paths quickly, including just terminal node paths (xml_get_paths). Also has two functions for helping convert xml code to data frames (xml_to_df and xml_dig_df). ultinomics xmltools Tools to look at xml data. Has functions similar to the `tree` command line tool ( xml_view_tree). Allows one to find paths quickly, including just terminal node paths (xml_get_paths). Also has two functions for helping convert xml code to data frames (xml_to_df and xml_dig_df). umasds mlame Average marginal effects with machine learning algorithm umatter RWebData umd-lib animalmove Analysis of animal population-level patterns in R umerijaz microbiomeSeq An R package for microbial community analysis in an environmental context umga Proje asdf umihoshijima seafetCarb No description or website provided. umihoshijima seafetcalc ummel exampleR Example/test using OpenCPU umutkahramankaptan CLT_Shiny CLT_Shiny umutkahramankaptan FARS-er Data Reading, Summarization and Visualization Tool for US National Highway Traffic Safety Administration's Fatality Analysis Reporting System (FARS). umutkahramankaptan farspkg FARS Data Reading, Summarization and Visualization Tool umutyil ozbay R component for Ozbay Mobilya umutyil umutTest Test for OpenCPU anova scripts unDocUMeantIt iRcotofun An R package to create jeopardy-like browser quiz games. unDocUMeantIt koRpus An R Package for Text Analysis unDocUMeantIt koRpus.lang.de R package adding support for German to the koRpus package unDocUMeantIt koRpus.lang.en R package adding support for English to the koRpus package unDocUMeantIt koRpus.lang.es R package adding support for Spanish to the koRpus package unDocUMeantIt koRpus.lang.fr R package adding support for French to the koRpus package unDocUMeantIt koRpus.lang.it R package adding support for Italian to the koRpus package unDocUMeantIt koRpus.lang.nl R package adding support for Dutch to the koRpus package unDocUMeantIt koRpus.lang.pt R package adding support for Portuguese to the koRpus package unDocUMeantIt koRpus.lang.ru R package adding support for Russian to the koRpus package unDocUMeantIt roxyPackage Utilities to automate R package builds unDocUMeantIt sylly Hyphenation and Syllable Counting for Text Analysis unDocUMeantIt sylly.de Language Support for 'sylly' Package: German unDocUMeantIt sylly.en Language Support for 'sylly' Package: English unDocUMeantIt sylly.es Language Support for 'sylly' Package: Spanish unDocUMeantIt sylly.fr Language Support for 'sylly' Package: French unDocUMeantIt sylly.it Language Support for 'sylly' Package: Italian unDocUMeantIt sylly.nl Language Support for 'sylly' Package: Dutch unDocUMeantIt sylly.pt Language Support for 'sylly' Package: Portuguese unDocUMeantIt sylly.ru Language Support for 'sylly' Package: Russian unDocUMeantIt tm.plugin.koRpus A compatibility plugin package for 'tm' and 'koRpus' unbounce kissr Access KissMetrics reports through R unbounce ub.s3r S3 Utilities for R Using AWS CLI unbounce ubDataMiscr Miscellaneous utilities and tools for R used by the Unbounce Data Team. uncoollocket strider An implementation of the master thesis unpiexwill UNPIE_BACK_END uq-eresearch UQUADIIndicator This R package is used to access UADI indicators uribo Japan.useR 🎌Japanese R user community materials and information datasets uribo SUmisc Personal miscellaneous ®️ Functions uribo baddata uribo containership Utilities to Docker Image and Container using R uribo designer 🎨 tools for design with R uribo esa.io 🐣 `esa` API `v1` Wrapper Package uribo htv 👤 TASK VIEW: HOXOM that Japanese Secret Society of Data Science uribo imrad Enhanced your research project uribo jpmesh :white_square_button: Utilities for Japanese mesh code uribo jpndistrict 🗾 Create Japansese Administration Area Maps uribo lab.note 📔 Create Laboratory Note and Report Using R Markdown uribo motivator 📦 Keep and improve working motivation uribo pkg_sample uribo precure 💄 Pretty Cure Color Palette for R uribo roracle Notification From R uribo talk_150905tokyor50 uribo wakatimer :hourglass: Unofficial RStudio (IDE for R) WakaTime (https://wakatime.com) plugin. urieduardo farsfunctions Visualize accidents by year and US state urielaero tweet_r Analisis de tweets con R ursus-americanus mallorn mallorn is an R package for calculating expected Phylogenetic Diversity and Evolutionary Distinctiveness us-bea bea.R bea.R: A library for use with BEA’s API usagi5886 PraatR An architecture for controlling Praat with R usagi5886 intonation R package for the linguistic analysis of fundamental frequency (F0) in speech user05011988 prova usf89 fixedpackage uslaure SEOSUP uslfin uslfin Unsupervised Learning Methods for Financial Decision Making usnistgov ERCC2 usnistgov SCOUT_Python usnistgov SCTK usnistgov erccdashboard_preBioC Analyze ERCC spike-in RNA controls in Differential Gene Expression Experiments usnistgov hit-validation usnistgov igamt usnistgov mixturesolutions solving linear models of genome-scale mixture datasets usnistgov org-documents usnistgov peprDnaStability R package with shiny application for analyzing PFGE gels used to assess genomic DNA RM stability. usnistgov peprr Pipeline for Evaluating Prokaryotic References R - R package for analyzing pepr output. usnistgov potMax estimate the distribution of the maximum of a time series using peaks-over-threshold models usnistgov sphere usnistgov testing_temp usobiaga diaMeasures diaMeasures R package for Diatech, eudia program. usobiaga diatechServer diatech server utils package ustunb rslim R package to create SLIM scoring systems utnesp Easy-bioMart Provide some functions to make biomart easier to handle utnesp Faster-R-cor-function Get correlation analysis done faster when data.frame is BIG by using parallelization :) utshahansen2604 starters This R package contains starter pack function to install and import frequently used packages uvasomrc scratchr uwadaira plsopt R package to get PLS regression results under different preprocessing methods uwadaira plsropt plsropt uwescience dotgov-webdata uwescience popcycle Popcycle is an R package that processes continuous flow cytometry data from SeaFlow repository. The software is built to perform real-time data analysis and be operated remotely via satellite connection uwkinglab detectpme uwmyuan bmapdistance Inquiry distance and duration between two points with Baidu Map API 使用百度地图API查询两个坐标点的路网距离和行程时间 uwycul mvGSEA uyedaj bayou uyedaj treeplyr An R package for using dplyr on matched tree and data objects uyedaj treetimer An R package to time-calibrate OpenTree phylogenies against the Time tree of life. uyedaj treetimerstudy uyenhoang panelmanager uyenhoang pplpredict uzh PAI-Kingsheep uzh checkYourReps Characterize the particular features of individual replicates in RNA-seq experiment uzh ezRun An R meta-package for the analysis of Next Generation Sequencing data uzh sns-hobbes-spm-pipeline uzhao Blending uzhao vertica.dplyr vadimus202 datatableEZ A Friendly Datatable vadimus202 fars Working with FARS data vadimus202 quakeR Package for working with the NOAA Significant Earthquakes dataset vagnerfonseca edf vagnerfonseca testReadEdf valcu MV a random collection of R functions valcu colorZapper Color extraction utilities valcu expp Spatial analysis of extra-pair paternity valcu rangeMapper A platform for the study of macroecology of life history traits valenlab amplican valentinitnelav plotbiomes Data for plotting Whittaker biomes with ggplot2. valeriyafilipova StochasticPQRUTSeNorge uses SeNorgedata to generate flood quantiles at ungauged catchments valery-sherina TaqManRNAseq_project BST550 valery-sherina nondetects2-Val Methods to model and impute non-detects in the results of qPCR experiments:SI, MLE, MI valery-sherina nondetects_devel imputation and estimation of non-detects in qPCR experiments validmeasures bbw Blocked Weighed Bootstrap validmeasures nipnTK The NiPN data quality toolkit validmeasures odkr Open Data Kit R API validmeasures ramOP Rapid Assessment Method for Older People (RAM-OP) validmeasures washdata Urban Water and Sanitation Survey Dataset validmeasures washr vanAmsterdam amstR Package with conveniance functions for using R vanAmsterdam epistats R package with functions for epidemiology and statistics vanLunteren DescrTab vanatteveldt Rpino Simple R client for calling Alpino and parsing result as tokens vanatteveldt datasync R functions to rsync and access project data directories vanatteveldt frogr R client for the frog tagger and parser for Dutch vanatteveldt nlpiper R bindings for nlpipe vanatteveldt rsyntax R library to help dealing with syntactic structure vanatteveldt topicbrowser Browse LDA topics models vancebee MarkovSCD Markov-based Analyses for Single Case Designs vancebee McVeighFcn vandenman DstarM R package DstarM vandenman JASPgraphs vanderleidebastiani PCPS R Package - PCPS - Principal Coordinates of Phylogenetic Structure vanderleidebastiani SYNCSA R Package - SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities vanderleidebastiani daee daee - Data Analysis for Ecology and Evolution vando026 successr R code for the Ultimate Success Plan vandomed dvmisc Faster Computation of Common Statistics and Miscellaneous Functions vandomed pooling Fit Poolwise Regression Models vandy10s mnma vanessaschoeller RTutorTseTse vanessaschoeller RTutorTsetse2 vanita1 A1B2 vanita1 Hurricane1 Hurricane1 vankesteren Massign Simple matrix construction in R vankesteren blim Univariate Bayesian Linear Modelling vankesteren vennvis Visualise Variable Relations using Venn Diagrams vanmooylipidomics LOBSTAHS Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences) vanmooylipidomics PtH2O2lipids Git repo for R dataset "PtH2O2lipids," containing HPLC-ESI-MS lipid data from treatment of diatom cultures with hydrogen peroxide vapniks XLConnectXtra Convenience functions for handling excel files with XLConnect in R vapniks formula_utils Utitlity functions for manipulating formulas vapniks mergeutils Functions to aid merging disparate datasets varemo piano piano - An R/Bioconductor package for gene set analysis variani athaliana R data package for the A. thaliana data set variani bigcov Covariance/Correlation for big data in base R variani cpca Uncommon Common PCA variani dbda Packaged R code from the book Doing Bayesian Data Analysis (dbda) variani interatt R package to explore attribute interactions variani lme4qtl Linear mixed models (@lme4) + user-defined covariances + restrictions on model parameters variani matlm linear models (lm) in matrix form: testing multiple predictors fast variani pckdev Package development in R variani qq Q-Q plots, inflation and friends variani wlm linear model (lm) weighted in many ways: wls, gls, lmm1 variani wls Generalized (Weighted) Least Squares with variance-covariance matrix for residuals vasanthgx ismbTweetAnalysis vasishth MetaAnalysisJaegerEngelmannVasishth2017 Code and data to accompany the article by Jaeger, Engelmann, Vasishth (2017). Similarity-based interference in sentence comprehension: Literature review and Bayesian meta-analysis. Accepted pending minor revisions, Journal of Memory and Language. vasishth VasishthLab Psycholinguistic Data and Example Analyses from Vasishth Lab (Potsdam) vasterlund Lab3_Albin_Eric Lab 3 Albin och Eric vasterlund Lab7_Albin_Eric vathymut TreasuryYieldCurveSplines Treasury yield curve interpolation using splines vathymut bondyields Download Treasury Bill and Bond Yields Data from the Bank of Canada. vathymut indemnity Calculate the NHA MBS indemnity yield. vavasquezhe Prueba vbfelix ggwave ggplot2 plots for wavelet cross-correlation vbonhomme KappaV KappaV R package. Calculates congruence between two patchy mosaics / vectorial landscapes. vbonhomme LCC Large Charcoal Count in R vbonhomme Modown a minimalist file format for morphometrics data vbonhomme Momocs Morphometrics using R vbonhomme Momosaics Plots and shapes as mosaics vbonhomme coo a minimalist file format for morphometrics data vbonhomme eigenfaces eigenfaces using R vbonhomme kerouac A R/port of the Most Dangerous Writting App vcastro Ri2b2casecontrol vcastro Ri2b2matchcontrols vcastro massdoctors massdoctors vcerqueira tsensembler R package - Dynamic Ensembles for Time Series Forecasting vcopley AdvR vcopley ctest vcoscrato agnostic R tools for agnostic inference vcoscrato ktest R interface for estimated kernel densities comparisons vd4mmind methylkit Automatically exported from code.google.com/p/methylkit vdiazhe r-practica2-ejercicio4 funciones dummy de prueba para el ejercicio 4 de la práctica de R vdorie blme Bayesian Linear Mixed Effect Models vdorie cibart Causal Inference using Bayesian Additive Regression Trees vdorie dbarts Discrete Bayesian Additive Regression Trees Sampler vdorie npci Non-parametrics for Causal Inference vdorie treatSens vdumeaux mixt vdumeaux mixtApp vdumeaux mixtData vdumeaux mixtR vdumeaux mixtUtils vecherkin BearingLandscapeUtils Bachelor's degree vectrun localoptions This R package contains two functions which loads an configuration file with options. These options are stored into R's options settings (using options()) vectrun pgblobs blobs for pgobjects vectrun pgobjects R package to store R objects (including functions, environments etc) into a PostgreSQL database vedangvyas trial2 vedangvyas vedangpac New package created in RStudio veera-dr ggman R package to create manhattan plots using ggplot veera-dr predixcantools Helper functions to predixcan and metaxcan vegandevs lmodel2 Model II simple linear regression using ordinary least squares (OLS), major axis (MA), standard major axis (SMA), and ranged major axis (RMA). vegandevs vegan R package for community ecologists: popular ordination methods, ecological null models & diversity analysis vegandevs vegan3d Dynamic and static 3D plotting for vegan velocyto-team velocyto.R venciso powerFunc venelin POUMM The Phylogenetic Ornstein-Uhlenbeck Mixed Model venelin patherit Pathogen Trait Heritability venelin toyepidemic An R package for simulating within-host and between-host dynamics during epidemics venuthatikonda covPP covPP library venyao binQTL QTL mapping with binmap data venyao intansv Integrative analysis of structural variations. verajosemanuel ESmisc R package for spanish data functions. Working on CRAN package release shortly verajosemanuel spanish formerly ESmisc. R package for processing some kinds of spanish data veronicagiro qshift Shifted probability distributions functions veronicagiro qtruncate veronikayurchuk repo1 No description or website provided. verreet cats vertica vertica.dplyr verweijruben iftools functies om het if model te ondersteunen verweijruben model veseshan DNAcopy veseshan pctGCdata R datasets of GC percentages for human and mouse genomes veseshan seqDNAcopy vgpprasad91 graph vgrabovets helperFunctions A bunch of helper functions for everyday use. vh-d RPortfolioSimilarity vh-d SFAb R Package For SFA (Stochastic Frontier Analysis) Using Bayesian Methods vh-d SFAsim Simulate Data for Stochastic Frontier Analysis vh-d SFAt R Package For SFA (Stochastic Frontier Analysis) Using Traditional Statistical Methods vh-d VHtools R package with various tools to make the life a little bit easier... vh-d openLEIr Interface for accessing metadata of financial entities based on their LEI (legal entity identifier) codes from R vh42720 fars JHU R Package victor-moreno jamovi-lmR victorcarmelo WISH victorcarmelo WISH_beta victorvicpal MGSR Multivariate Gaussian Subspatial Regression R package vidyasagarbhargava githubtest This is description of package vijaybarve ENMGadgets Gadgets for Ecological Niche Modelling vijaybarve Sandbox vijaybarve bdclean biodiversity data cleaning vijaybarve bdsns Biodiversity data from Social Networking Websites in R vijaybarve bdvis Biodiversity data Visualizations in R vijaybarve mygbif Testing my first R package vijaykrishnavanshi curtz vikjam bcstatsR R version of the Stata command bcstats vikjam pwrcalc Yet another power calculation package in R. vikjam tractR Simple R Wrapper for the Census Batch Geocoder API villandre DMphyClus A R package for phylogenetic clustering villardon MultBiplotR villardon MultBiplotRGUI vimc jenner Internal R montagu helpers vimc montagu-r vimc orderly :hospital::ambulance: Order, produce and store reports from a database, via R vimc orderly.server :hospital::ambulance: :arrow_right: :computer: Orderly server vimc phipps :syringe: vimc vaultr :lock: API client for Hashicorp's vault (https://www.vaultproject.io/) vinash85 avinash misc R library vincela VarExp Estimating fraction of phenotypic variance explained from summary statistics vincent-dk Xsgl Minimal example of sgl package using the sglOptim enigen vincent-dk epiG Statistical Inference of Epi-allelic Patterns from Whole-Genome Bisulphite Sequencing Data vincent-dk epiG-pkg Statistical Inference of Epi-allelic Patterns from Whole-Genome Bisulphite Sequencing Data vincent-dk logitsgl High Dimensional Multi-label Logistic Regression vincent-dk lsgl High Dimensional Linear Multiple-Response vincent-dk msgl High Dimensional Multiclass Classification Using Sparse Group Lasso vincent-dk rcsgl regression via sparse group lasso classification vincent-dk sglOptim Fast Generic Solver for Sparse Group Lasso Optimization Problems vincent-dk vincent-dk.github.io vincent-van-hoef myFunctions Collection of custom R functions vincentarelbundock WDI vincentarelbundock btergmHelper vincentarelbundock countrycode R package: Convert country names and country codes. Assigns region descriptors. vincentarelbundock regrets R package to print facts and pictures of egrets vincentarelbundock vincent vincenzoaellis malaviR An R interface to MalAvi vincenzocoia copsupp R package that's a supplement to the CopulaModel package. vinh0105 mypackage vinh0105 rpackage vinhtantran PULS first submission vinhtantran consultingS2016 vinhtantran monoClust monoClust vinisousa04 AdvancedDataAnalysis Companion to University of Limerick module MS4215 vinisousa04 BasicEconometrics A companion to a first course on econometrics vinisousa04 DadosLivroR vinisousa04 hello fazendo o primeiro pacote no r vinisousa04 teste4 trial vinisousa04 teste5 vinisousa04 teste6 trial vinny-paris DnD 585 Semester Project viraltux Robocoap Generation of co-appearance information within texts viraltux casino Functionalities to analyze games virgesmith demographyMicrosim Microsimulation for Demography Worked Examples virgile-baudrot morseStan virgile-baudrot rstanTKTD A library for Bayesian fitting of TKTD model with the Stan language visanuwan BCMG-Workbench a Basic Comparative Microbial Genomics workbench viswaraavi GsocAnimint vitkl MItools Molecular interaction data tools, retrieving data using PSICQUIC service vivek3107 prfavpawar Programming in R vivekbhr vivlib Useful wrappers and functions for RNA-Seq analysis vjcitn BMI713pack support for HMS BMI713 Fall 2016 vjcitn BiocOncoTK Bioconductor components for general cancer genomics vjcitn BiocSklearn Bioconductor-oriented interfaces to python sklearn, using Rstudio reticulate vjcitn DelayedRemote experiments with DelayedArray concept for web-served numerics vjcitn MultiAssayBT Google Cloud Platform BigTable back end for MultiAssayExperiment (experimental) vjcitn MultiAssayExperiment R package(s) demonstrating management of multiassay data on a set of samples vjcitn RemoteArray experiments with DelayedArray concept for web-served numerics vjcitn Repro2017 Materials for a catalyst talk vjcitn RxGeno support for pharmacogenomics integration vjcitn TxRegInfra Some Bioconductor-oriented infrastructure for TxRegQuery vjcitn VariantBench formal approach to benchmarking variant access and analysis vjcitn barca Bayesian absolute risk from case-control data vjcitn benchOOM benchmarking out-of-memory strategies for R vjcitn biocMultiAssay R package(s) demonstrating management of multiassay data on a set of samples vjcitn ccleR6 lightweight package for interfacing to CCLE vjcitn drosmap support for clustering lecture in CSAMA2016: NMF for drosophila cell fate map from expression patterns vjcitn fatemapper Bioconductor tools for cell fate map analysis vjcitn gQTLbrowser ggvis + shiny for interactive gQTL exploration vjcitn grasp2pack interface to NHLBI grasp v2.0 vjcitn hmdbQuery utilities for querying Human Metabolome Database vjcitn hsdsRclient R/bioconductor interface to HSDS (HDF5 object store) vjcitn ivygapSE SummarizedExperiment for Ivy-GAP vjcitn midt support for 2016 midterm vjcitn mowChIP Data structures and algorithms for MOWChIP (PMID 26214128) vjcitn ogttMetrics R package for managing and analyzing large collections of oral glucose tolerance tests vjcitn ontoProc RDF ontology processing for Bioconductor vjcitn parody parametric outlier dytection tools vjcitn pogos PharmacOGenomics Ontology Support vjcitn restfulSE demonstration of SummarizedExperiment with assay component retrieved from remote HDF5 server vjcitn rsbiascomp comparison of bias correction methods for RNA-seq vjcitn survey1kg tools for exploring 1000 genomes with R vjcitn tenXplore exploration of 1.3 million neurons published by 10x genomics vjcitn useret demonstrating reticulate with R vkapartzianis SparkR vkati06 FARS vkobayashi IincrementalityTEST incrementality testing vkobayashi IncrementalityTEST incrementality testing vkontis maple maple: Model averaged projections of life expectancy vkostakos hcitools vks17 OwnInfo R Package for Useful functions vkubicki ProjectEulR Attempt to solve some Project Euler problems in R using functional programming vkubicki Rernel A R package that provides a wrapper to Sernel vladchimescu IRkernel1 vladchimescu RdocsJupyter assists in conversion of R documentaition to ipython vladchimescu repr1 vladpetyuk EuplotesCrassus.proteome support of research manuscript vladpetyuk LewyBodies.SN.BottomUp vladpetyuk LewyBodies.SN.BottomUp2 should be a temp repository vladpetyuk LewyBodies.SN.TopDown vladpetyuk MSnID utilities for handling MS/MS proteomic identifications vladpetyuk N14N15 N14/N15 ratio quantitation vladpetyuk simMSnSet simulation of quantitative proteomics data vladpetyuk vp.misc custom wrappers of frequently used R code vlahm MCMCwrap Organize MCMC posterior draws (coda/R2jags mcmc.list objects) vlahm manipulateR Tools for streamlining the general data processing pipeline vlahm statextra Utilities for generating, analyzing, plotting prob/stat data vlkong testy vlsci Analytics vlsci ggplotheatmap An R package for making heatmaps with ggplot vmarchman Web-CDI vmikk metagMisc Miscellaneous functions for metagenomic analysis. vmikk phylonest Equivalent numbers for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales vmonaco frailtySurv A General Semiparametric Shared Frailty Model vmonaco transfer-encoder vmsbase R-vmsbase VMSbase is an R suite for the analysis of vessel monitoring system (VMS) and logbook data, which constitute two of the primary sources of information for spatially explicit models of the fishing effort. It is conceived to solve many of the nuisance details related to this specific kind of data, providing a strainghtforward path from data massagi… vnijs MathJaxR MathJax as an R-package vnijs gitgadget Rstudio addin for version control and assignment management using git vnijs radiant Business analytics using R and Shiny vnijs radiant_parts vnminin bayessir Bayesian inference for hidden Markov Susceptible-Infected-Removed (SIR) model vnminin indorigin R package for testing how many times a trait of interest was regained during evolution (aka independent/separate origin hypotheses) vnminin phylomap R package for phylogenetic stochastic mapping, including a new method that bypasses matrix exponentiation vnminin rbrothers Multiple change-point recombination detection vnminin stochmodbook Code and data for "Stochastic Modeling for Scientific Data" book voaustin96 facultyephs vobencha VariantAnnotation VA github repo vobencha curatedMetagenomicData test package for Levi's data vodkatad MatrixRider Calculate total affinity and occupancies for binding site matrices on a given sequence vodkatad roar http://www.bioconductor.org/developers/release-schedule/ vogel1716 metaview No description or website provided. voigtstefan Rbitcoincharts R Interface to work with bitcoincharts.com data voigtstefan Rbitfinex A data scrapper for the bitfinex orderbook voigtstefan RrealCov Modeling Realized Covariances and Returns (Replication of Xin Jin John M. Maheu) voigtstefan btap voigtstefan delta R Package voigtstefan lobster Useful functions to play around with lobster data voigtstefan privtools Collection of private useful tools vojtechhuser OHDSIVocab vojtechhuser rcdisc rcdisc package with sample files for one study volansys earthquake-visualization volansys r-package-building volkerschmid bioimagetools voltek62 RsparkleR RsparkleR provides an R interface for launching virtual machines and deploying Sparkler vonjd OneR This R package implements the One Rule (OneR) Machine Learning classification algorithm with enhancements for sophisticated handling of numeric data and missing values together with extensive diagnostic functions. vonthein illustrator R package for symbol plots vovkaOst TextClassifier R package with deferent methods for classifying dataset: http://archive.ics.uci.edu/ml/datasets/NSF+Research+Award+Abstracts+1990-2003 vovkaOst alhe ABC algorithm using metaheuristic pattern. Written using Rstudio voxnonecho virit Categorical viridis colors vpellissier packing Relative contribution of niche packing and expansion vpellissier pargwr Parallel computing of GWR bandwidth vpellissier test vpnagraj Bmisc vpnagraj bootstrapr vpnagraj hei vpnagraj rrefine r open refine api client package vpnagraj shinylist shinylist htmlwidget for rendering HTML lists from R output in Shiny vpranavanshu91 Git-Silent-Commit Git Silent Commit helps clear your RStudio workspace, pull/push changes onto your git repo and clear your console. All at the click of a button. vqv fps An R package for sparse PCA via Fantope Projection and Selection vqv ggbiplot A biplot based on ggplot2 vreuter SwissR Utilities for working in R vrrenske shinyspots *in development* R package & shiny app for analysis of segmentation & fluorescence data vrunge plotFPOP Display of the functional cost for FPOP 1d and 2d with R vsart ClimateBayes R package implementing bayesian temporal, spatial and spatiotemporal statistical models and tools, both general and with a focus on climate data vsart vctUtils R package containing some utility functions vsbuffalo ProgenyArray An R package to work with half-sib progeny array data vsbuffalo TxDb.Zmays.Ensembl.AGPv2.17 Transcript database for Zea mays Ensembl AGPv2.17 vsbuffalo Zmays.angsd.tilbkn.AGPv2.17 vsbuffalo angsdr load ANGSD data in R vsbuffalo annotatr vsbuffalo eve102 vsbuffalo flowerpower R pakage to access Parrot's FlowerPower plant sensor data vsbuffalo gplyr vsbuffalo msr Process MS results in R, in a tidy way vsbuffalo mstools some tools I use in working with MS results vsbuffalo pathfindr vsbuffalo pygmentr Python Pygments from R vsbuffalo qrqc Quick Read Quality Control vsbuffalo rivr vsbuffalo stanhl Stan syntax highlighting for knitr vsbuffalo tasselr Some beta interfaces to Tassel's GBS data on HDF5 vsemichev farsr Coursera Building R packages course - week 4 vserch himc High-throughput Mitochondrial Classification vsimko rroad R Package: Road Condition Analysis vsimko trafficmsd Multiscale decomposition of network traffic vspinu R-bencode bencode vspinu R-edamot R middleware for edamot vspinu R-nREPL nREPL client and server for R vspinu VSR vspinu betfairly R betfair api vspinu bnlearn personal clone of bnlearn package vspinu pbm Prototype Bayesian Modeling vspinu protoClasses Prototype Programming with Contexts and Forms vspinu recor Recommender Systems for R vspinu simdist High performance similarity and distance metrics for sparse representations vsrimurthy EPFR A package of all functions needed for EPFR Quant Research vst callfest An R Package for calling functions over a combination of arguments vst mgarch mgarch Package for R-Project vst mgarchBEKK R Package for Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes vst rkvo R Package for reading files containing observations consisting of Key/Value Pairs vst sepl Auxiliary Functionality for OpenCPU vstanislas GGEE R Package for the Group Lasso Gene-Gene Eigen Epistasis (G-GEE) Method vt-arc wosr R clients to the Web of Science and Incites APIs vtrubets OmicKriging Improvements for OmicKriging CRAN release. vuzun helpers vwendy pompom R package to perform time-series analysis vwmaus dtwSat Time-Weighted Dynamic Time Warping for satellite image time series analysis vwmaus geoScidb Utilities for SciDB geographical data processing and visualization. vyshark notR vz-risk verisr R package for working with VERIS data vzhomeexperiments translateVTT R package for translating VTT subtitles w-korani keggseq R package and Unix shell script for KEGG enrichment analsyis of RNA-seq data w2felix TCGADataFelix w9 zh Fast heatmap w9 znmf Fast and convenient NMF w9 zp-r ZP: 3D scatter plot - R interface w9 ztb-r ZTB: Display data frames in browser w9 zx An R package full of helper functions I use on a daily basis. wStockhausen rCompTCMs R package to facilitate comparisons of TCSAM2013 and 2015 models. wStockhausen rPIBKC R package for the PI blue king crab stock assessment. wStockhausen rTCSAM02 R package for extracting results from TCSAM02 (formerly TCSAM2015) assessment model runs. wStockhausen rTCSAM2013 Source files for an R package with functions for running TCSAM2013 and plotting model results. wStockhausen rTCSAM2015 R code for plotting TCSAM2015 model results. wStockhausen rsimTCSAM R package to simulate data for the Tanner crab model wStockhausen tcsamCrabFisheryData A collection of R functions related to (ADFG) crab fishery data. wStockhausen tcsamFunctions A collection of R functions related to Tanner crab assessment data. wStockhausen tcsamSurveyData A collection of R functions related to Tanner crab survey data. wStockhausen wtsDisMELSConn R package for conducting connectivity analyses with DisMELS model output. wStockhausen wtsGMT This is an R package developed using RStudio to allow the user to create GMT maps from an input csv file. wStockhausen wtsPlotUtils R package with utility functions for plotting. wStockhausen wtsPlots R package with various plotting functions. wStockhausen wtsUtilities R package with various utility functions. wabarr ggphylomorpho A function to compute ancestral states using phytools and make a phylomorphospace in ggplot2 wabarr simulateSpatialData wacl-york waclr An R package for activities at Wolfson Atmospheric Chemistry Laboratory (WACL) wagnertimo emarketcrawlR This R package provides a crawler to scrape the European Energy Market EPEX SPOT at https://www.epexspot.com and the European Energy Exchange at https://www.eex.com wagnertimo entsoecrawlR This R package crawls energy system data of the European Network of Transmission System Operators (ENTSO-E) at https://transparency.entsoe.eu wagnertimo rmarketcrawlR This R package provides functions to crawl the german operating reserve market platform (balancing power market) at https://www.regelleistung.net/ wagnertimo smarketcrawlR This R package provides functions to crawl the stock market at the platform http://www.ariva.de wagnertimo wagnertimoR This repository contains my personal R package which is made of personal helper functions and will iteratively grow. wagnerufs qGaussian wahalulu meetupr R package to pull and analyze data from meetup.com wahani SAE wahani aoos Another Object Oriantation System in R wahani dat Tools for Data Manipulation in R wahani fuTools wahani module Modules in R wahani modules Modules in R wahani saeRobust Robust Small Area Estimation wahani saeRobustTools Tools for Fitting Robust Mixed Models in Small Area Estimation wahani saeSim Tools for generating simulated data in the context of small area estimation wahani shinyMonitoring A shiny app for monitoring log files wahani slider wahani templates Tools for Template Programming in R wahani testInline Write unit tests in source files wahani tidyrS4Warning temp repo to test dependencies wahani wahaniMiscs miscs package for R waissbluth skewttest Bootstrapped skewness-adjusted t-test wakawakaon project wakuteka exampler R package example walachja Biomarker The package for identification of biomakers and outlier diagnostics as described in paper 'Robust biomarker identification in a two-class problem based on pairwise log-ratios' walachja pretreatment Two normalization methods. In order to run pretreatment package devtools package must be installed, then do library('devtools') and install_github('walachja/pretreatment'). More description can be found in ADD BOOK REFERENCE waldgruber bsc waldronlab BiocInterfaces waldronlab GSEABenchmarkeR Reproducible GSEA Benchmarking waldronlab HMP16SData 16S rRNA Microbiome Data from the Human Microbiome Project waldronlab MultiAssayExperiment Bioconductor package for management of multi-assay data waldronlab MultiAssayExperimentData Datasets using the MultiAssayExperiment data class. waldronlab MultiAssayExperimentWorkshop A workshop on multi-omics data representation and analysis with MultiAssayExperiment waldronlab MultiAssayExperiment_Bioc2016 waldronlab MultiAssayShiny A shiny tool for exploring MultiAssayExperiment methods waldronlab ProteogenomicsChallenge waldronlab TCGAmisc No description or website provided. waldronlab TCGAutils Toolbox package for organizing and working with TCGA data waldronlab curatedMetagenomicData Curated and processed metagenomic data through ExperimentHub waldronlab curatedTCGAData Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects walkerjeffd fluxr R package for estimating water quality loads walkerjeffd myrwaR R package for the Mystic River Watershed Association walkerjeffd walkerenvres R Package for Walker Environmental Research, LLC walkerjeffd weathergen weathergen R Package walkerke IDBr An R interface to the US Census Bureau International Data Base API walkerke acs14lite Lightweight R interface to the Census API for the 2010-2014 American Community Survey walkerke aha walkerke bsselectR In-progress htmlwidget for bootstrap-select walkerke geojsontest walkerke idbr An R interface to the US Census Bureau International Data Base API walkerke kwgeo Tools for visualizing and manipulating geographic data in R walkerke tidycensus Load US Census boundary and attribute data as 'tidyverse' and 'sf'-ready data frames in R walkerke tigris Download and use Census TIGER/Line shapefiles in R wallaceEcoMod wallace a GUI-based app for ecological niche modeling walmes EACS Estatística Aplicada à Ciência do Solo walmes RDASC Reproducible Data Analysis of Scientific Cooperations walmes wzRfun Auxiliary functions for courses, analysis and data visualization. walshc FEEMProbit Function to estimate the individual fixed effects expecation-maximization estimator walshc GoogleMapsAPI R package to geocode and reverse geocode locations and places/establishments using the Google Maps API walshc YelpAPI R package to use Yelp's search API walshc base16colorout R package to set output colors to a base16theme with the colorout package walshc grayscaleMap A grayscale versions of ggmap's get_map() function walshc hex2colorout R package which converts hex colors to the closest ANSI escape code for use in the colorout::setOutputColors256 function walshc latlong2region An R package to match coordinates to regions in a shapefile walshc linearFeedbackModel R package to estimate the linear feedback model in Blundell, Griffith and Windmeijer (2002) walshc nightlights R package to extract NOAA night lights data for regions in a shapefile walshc polygonNeighbors An R package to find which regions each region in a shapefile is adjacent to walshc regTex R package to export model estimates to LaTeX walter-ca Scale4C walternewzoo guillotine walterxie ComMA Community Matrix Analysis wammonj genetics Using genetics data wampeh1 csi991 csi991 demo wamserma R-wmisc Everyone needs his own misc package for R. wamserma VCD2R a small R package to read VCD (Value Change Dump) files and play a bit with the data wang114 foofactorsran Make factors less annoying wangbokai bokaiw2 just for fun wangbokai bokaiw3 1st push wangj26 WebGestalt wangj26 multiOmicsViz wangjiayang0000 HelloWorld Used to test GitHub wangkoko R-script-dev dev with Ting wangqinhu aid an R package for the analysis of inoculation data (experimental) wangxj524 JerryPlot wangxj524 RstudioAddins No description or website provided. wangxj524 insertSymbol wangxj524 rclockplot wangyinanchina markov3d wangyuchen MethyBayes wangyuchen cpptests Testing package dependency in Rcpp wangyuchen extdplyr Data Manipulation Extension based on dplyr and tidyr wangyuchen jtrans Johnson transformation for normality. wangyuchen sppmix Mixture models for spatial point pattern wangzhishi nw wangzhishi test test wantpinow NYC-Taxicab-Package A package in R to extract, transform, and load data from the NYC taxicab dataset into a SQL server war-on-ice nhlplot war-on-ice nhlscrapr war-on-ice nhlscrapr-full The full version of nhlscrapr that will work for Linux users only. war-on-ice warbase warlicks beeR R interface for brewerydb API warlicks swimR Building R Package to Collect & Manage College Swimming Results warlicks swimming_app Building R Package to Collect & Manage College Swimming Results warnes Rlsf warnes SASxport warnes SII warnes TracAnnouncer warnes bwRF warnes exp.ssize warnes fork warnes gMCMC warnes gStreamLauncher warnes gdata warnes gmodels warnes gplots warnes gregmisc warnes gtools warnes namespace warnes ssize warrenmcg absSimSeq Simulate RNA-Seq experiments with explicit definition of the absolute RNA counts (Vignette Coming Soon!) warrenmcg sleuth-ALR Improve Differential Analysis using Compositional Data Analysis (Vignette Coming Soon!) wasquith-usgs MGBT Compute the multiple Grubbs-Beck low-outlier test on positively distributed data wasquith-usgs akqdecay Compute distributional statistics of hydrograph recession (decay) based on N-day-over-day changes of daily-mean streamflows wasquith-usgs rash wasquith-usgs utc2nwislocal UTC Date-Times to NWIS Local Time-Zones via UTC Offsets wasquith copBasic General Bivariate Copula Theory and Many Utility Functions wasquith lmomco L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions wazeerzulfikar rtensorflow R language bindings for TensorFlow. wazeerzulfikar sumx R Package for Integer Sum of two numbers in Hex String. wbach12 p9eventstudy Eventstudy functions wbaopaul rGMAP wbgreen0405 NOAAEQ wbgreen0405 NOAAearthquakes wbgreen0405 eqNOOA wbgreen0405 fars_data wbgreen0405 rNOAAEarthquake wbgreen0405 rNOAAeq wbonat mcglm Fitting multivariate covariance generalized linear models wbooker PloidyPal R Package and Files for polyploid analysis wbuchanan actR R wrapper around ACT's High School Lookup API wbuchanan concerto Personal fork of the Concerto Platform for assessments in R wbuchanan legiscanR R interface to the Legiscan API wbuchanan mdeAssessments Building Assessment Ingest Pipeline for REA wbuchanan reaRandom S4 Class and Methods for API Access to Random.org wbuchanan regexPipes magrittr friendly grep wrappers wbuchanan rideR R Package for scraping data from RI Department of Education website wbyouth Digit-Recognizer wbyouth ImageRocognition wbyouth Kaggle-Walmart-Trip-Type-Classification wbyouth Rdota2 A R package for dota2 Api query and report generation wccarleton Rlamap Locally Adaptive Model of Archaeological Potential in R wccarleton lamap Locally Adaptive Model of Archaeological Potential in R wch R6 R objects with reference semantics wch Rttf2pt1 R package for ttf2pt1- to be used with extrafont package wch badadd Example of operator overloading problem in R wch bisectr Bisect tools for R wch downloader R package for downloading files with https wch envtest Environment test package for R wch examplepackage An example R package wch extrafont Tools for using fonts in R graphics wch extrafontdb Package that holds the database for the fonts package for R wch fontcm Computer Modern font package for R wch gcookbook Data sets for R Graphics Cookbook wch harbor An R package for controlling docker containers on local and remote hosts wch onetest R test package for evaluation environment wch qstack Fast basic data structures for R wch rcpptest Experimenting with rcpp wch rspeed R speed tests wch s3methodtest Package for showing S3 method warning wch s3ops S3 dispatch on operators wch s4-union Test package for s4 stuff with devtools wch shiny-gridster Add-on package for using the Gridster library with Shiny wch shiny-handsontable Handsontable bindings for Shiny wch shiny-slickgrid Package for using Slickgrid with Shiny wch vtest Visual test system for R packages wch webshot Take screenshots of web pages from R wckdouglas RNAngs wckdouglas correctMultiCount This package contains only one function correctCounts as to assign multiply-mapped-reads to the most abundant gene that it mapped to. wckdouglas fdrcontrol R-package for FDR control with Rcpp wckdouglas plasmaDNA wckdouglas tgirtABRF R package for working with TGIRT-ERCC project wckdouglas tgirthamr R-package to facilitate tight-hamr analysis wcmbishop gogoplot An interactive ggplot2 gadget wconstan fractal Fractal Time Series Analysis wconstan ifultools C Code for wmtsa, fractal and sapa R packages wconstan sapa Spectral Analysis for Physical Applications wconstan splus2R R package facilitating S-PLUS migration wconstan wmtsa Wavelet Methods for Time Series Analysis wcornwell earthtones Derive a Color Palette from a Particular Location on Earth wcstcyx TxDb.Hsapiens.UCSC.hg18.refGene TxDb.Hsapiens.UCSC.hg18.refGene wcstcyx TxDb.Hsapiens.UCSC.hg19.refGene TxDb.Hsapiens.UCSC.hg19.refGene wdavis12 rmddm RMarkdown template useful for data mining projects wdearden208 ggabbott ggplot2 theme for Abbott Laboratories wdelva MiceABC wdelva RSimpactHelp This repository will be home to the RSimpactHelper R package wdtinc InsightR wdtinc SkyWiseDataTransferR API for interacting with the SkyWise Data Transfer API wdtinc SkyWiseNetCDFR NetCDF wrapper for reading and interrogating SkyWise NetCDF files wdwatkins demoPackage wdweeda start STorage and Analysis of Reaction Time data weRbelgium BelgiumMaps.Admin Administrative boundaries of Belgium based on OpenStreetMap data weRbelgium BelgiumMaps.OpenStreetMap OpenStreetMap data from Belgium weRbelgium BelgiumMaps.StatBel Administrative boundaries of Belgium based on Open Data at Statistics Belgium Public weRbelgium BelgiumStatistics Open Data and Maps of Belgium weRbelgium wordnet.dutch Open Dutch Wordnet for R users webb767 testpackage webbedfeet ProjTemplate Creates folder structure for a RStudio project, and adds utilities for loading packages and functions webdnaio webdna-sybilla webscale Telematics Insurance Telematics Package for R weecology LDATS LDA for Time-Series analysis weecology PortalDataSummaries A collection of functions to summarize the Portal Data weecology portalPredictionsWebsite-Delete-Me weecology portalr A collection of functions to summarize the Portal Data weekendwarri0r HowToMakeRProject wefang EIA wefang ghelper Genomics helper functions wefang journal_club wefang riso wegar-2 QuantFinR Qunatitative finance & related topics peregrinations in R wegene-llc radmixture an R package for ancestry analysis weichunliao baeirGPR weidewind evolikelihood R scripts for likelihood estimation of parameters for exponential and weibull models of amino acid substitutions (deaths of new allels) weininghu1012 allaboutknn Explore KNN(k-nearest neighbors) methods for dataset. weinstockj gwassim Code for an R package to simulate GWAS data and implements gene-based tests weiserc mvQuad mvQuad: Methods for Multivariate Quadrature (R-Package) weitinglin TestCreate A R package weitingwlin testRproject test with uploading R project to github weitingwlin vennchart Developing a R package for Venn / Eular charts weiyangtham econothemes ggplot theme inspired by NBER graphs weiyi-bitw DreamBox7 DreamBox7 package was used to create metagenes, pre-process data for the DREAM7 breast cancer prognosis challenge. weiyi-bitw cafr Attractor finding algorithm welch16 ChIPUtils A package with basic utilities for ChIP analysis (both ChIPseq and ChIPexo) welch16 ChIPexoQual A quality control pipeline for ChIP-exo/nexus samples. welch16 ChIPexoQualExample Example data for the ChIPexoQual pacakge welch16 Segvis Package to visualize next generation sequencing data along genomic regions welovedatascience stranger R Package: Simple Toolkit in R for ANomaly Get, Explain and Report wenbostar PGA Proteogenomics tool wenbostar proteoQC proteoQC: an R package for proteomics data quality assessment. wenchi0922 PISA2012_ wenchi0922 hw My R Assignment2 wencke wencke.github.io GOplot wendellopes rvswf Vector Spherical Wave Functions and Force Calculations wendian RImpalaCleanup Cleans up and makes usable the data imported from Impala to R via RImpala wenjie2wang dynsurv Dynamic models for survival data wenjie2wang intsurv Integrative Survival Modeling wenjie2wang reda Recurrent Event Data Analysis wenjie2wang splines2 Regression Spline Functions and Classes wenjie2wang touch Tools Of Utilization and Cost in Healthcare wenjingwang drifr Decomposite Recentered Influence Function using R wenjingwang quokar R packages wenright-rs1 badpkg wenrurumon testp wenshuoliu HDMrP wenshuoliu nbaPlayerTracking wenshuoliu ncvxclustr wenshuoliu rtest wepelham3 sack2 wesleyburr AHIsmooth SLP smoother objects for use of the AHI project wesleyburr multitaper multitaper R package wesleyburr slp slp: Discrete Prolate Spheroidal Sequence (Slepian) Regression Smoothers wesleyburr tsinterp tsinterp: A Time Series Interpolation Package for R wesslen topicApp A simple Shiny App for Topic Modeling in R westdana Timeline wevanjohnson ASSIGN ASSIGN is an R package for adaptive profiling of genomic signatures wevanjohnson swcarpentry wfarmer-usgs PUBAD wfarmer-usgs WREG WREG from matlab to R wfondrie evrspin An R package to the calculate the sedimentation properties extracellular vesicles by centrifugation wfondrie fondrie An R package containing functions I find useful wfondrie pixl determining Protein Interactions by Cross-Linking mass spectrometry wfondrie xCombR A database approach to identifying cross-linked peptides wgalvord owprm The owprm R package wgalvord sla R Package for Straight Line Ancova wgar84 ModularitySim Simulating shape for evaluating error rates in modularity tests wgar84 PopSim wgar84 Primaset Setting up a repository of primate skulls. wgaul wgutil wgmao PLIER Pathway-Level Information Extractor (PLIER): a generative model for gene expression data wgmao priorPCA wguo1990 l0ara wguo1990 tsdf Three-stage designs for Phase 1&2 wguo1990 vcm whaleshark16 MODA whanrott fermentR An R package containing converters and calculators for brewing and fermentation whatalnk docsetr Docset of your library whatalnk notebooks whatalnk ylist whcsu ELMSurv whcsu SurvELM whcsu rotsf rotation survival forest whcsu rsfse Survival Forest with Space Extensions for Time-to-event Data whcsu sfse Survival Forest with Space Extensions for Time-to-event Data wheelerb iCARE while FTRLProximal R package for online training of regression models using FTRL Proximal while binR Discretization of a dataset in R using formulas whitneyburrow HighDim2Means Tests for equality of two mean vectors from high dimensional datasets whitneyworley HighDim2Means Tests for equality of two mean vectors from high dimensional datasets whitwort courseR A toolset for for creating and updating content for courses taught in R, especially in a managed environment running RStudio and/or Shiny servers. whitwort coveR R package with utilities for working with coverings whitwort growthCurves R script to aid in the analysis of liquid culture growth curves. whitwort ozark-2016 whitwort plateKinetics wiaidp MDFA MDFA wibeasley r-package-skeleton SCUG class for creating an R package wiep introToR17 intro to r 17 pkg wiesenfa BDP2 Bayesian adaptive designs for phase II trials with binary endpoint. wietsefranssen victools wikimedia-research WMUtils An internal utilities library for the Wikimedia Foundation's R&D team. wikimedia-research pageviews A package of helper functions for calculating and handling pageviews to Wikimedia sites. wikimedia-research wmf R package for internal WMF use. wikimedia -mediawiki-extensions-DisplayTitle wikimedia All-Projects wikimedia analytics-limn-wikidata-data-vendor wikimedia apps wikimedia apps-android wikimedia apps-firefox wikimedia apps-glass wikimedia apps-ios wikimedia apps-mobile wikimedia apps-win8 wikimedia data-values wikimedia data-values-data-types wikimedia extensions-Limn wikimedia integration wikimedia labs-tools wikimedia labs-tools-faces wikimedia maps wikimedia mediawiki-bots wikimedia mediawiki-extensions-CloudSearch wikimedia mediawiki-extensions-WhatsNearby wikimedia mediawiki-php wikimedia mediawiki-ruby wikimedia mediawiki-services wikimedia mediawiki-services-zotero wikimedia mediawiki-tools wikimedia mediawiki-tools-upload wikimedia operations-debs-apertium wikimedia operations-debs-cg3 wikimedia operations-debs-contenttranslation wikimedia operations-debs-contenttranslation-apertium-af-nk wikimedia operations-debs-contenttranslation-apertium-api wikimedia operations-debs-contenttranslation-apertium-hi-ur wikimedia operations-debs-contenttranslation-python-toro wikimedia operations-debs-mariadb-server wikimedia operations-docker-images-toolabs-images wikimedia operations-software-coal wikimedia operations-software-tools-checker wikimedia operations-wheels wikimedia peformance-docroot wikimedia performance wikimedia pywikiapi wikimedia pywikibot wikimedia pywikibot-bots wikimedia pywikibot-externals wikimedia qa wikimedia rescue-pxe wikimedia research wikimedia search wikimedia search-query_string_plus_plus_plus wikimedia subversion wikimedia subversion-svn.wikimedia.org wikimedia subversion-svn.wikimedia.org-mediawiki wikimedia testrepo wikimedia thumbor wikimedia wikibase wikimedia wikibase-data-model wikimedia wikidata wikimedia wikidata-analytics wikimedia wikidata-query wikimedia wikimedia wikimedia wikimedia-IPSet wikimedia wikimedia-analytics-wikimetrics-deploy wikimedia wikimedia-bots wikimedia wikimedia-data-values-value-view wikimedia wikimedia-discovery wikimedia wikimedia-discovery-ortiz Github mirror of "wikimedia/discovery/ortiz" - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing wikimedia wikimedia-discovery-polloi Github mirror of "wikimedia/discovery/polloi" - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing wikimedia wikimedia-discovery-wmf Github mirror of "wikimedia/discovery/wmf" - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing) wikimedia wikimedia-education wikimedia wikimedia-fundraising wikimedia wikimedia-fundraising-crm-modules wikimedia wikimedia-fundraising-dash-src wikimedia wikimedia-security wikimedia wikimedia-thumbor-djvu-engine wikimedia wikimedia-thumbor-ghostscript-engine wikimedia wikimedia-thumbor-multi-handler wikimedia wikimedia-thumbor-page wikimedia wikimedia-thumbor-proxy-loader wikimedia wikimedia-thumbor-request-storage wikimedia wikimedia-thumbor-tiff-engine wikimedia wikimedia-thumbor-video-loader wikimedia wikimedia-thumbor-xcf-engine wikimedia wikipedia wikimedia wikipedia-wikiwidgets wikimedia zotero wikiselev SC3-old An interactive tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. wikiselev clustools Tools for clustering single cell sequencing data wikiselev rnaseq.mcf10a "Perturbations of PIP3 signalling" paper wikiselev stem.cell.ageing collaboration with Kristina Kirschner wikitropes writingtropes wilart wilprocr wilcoxa frequencies wiligl gittest2 wiligl simplr wilkelab cowplot wilkelab sicegar R package for the analysis of single cell virology growth curves wilkersj tumgr Tumor Growth Rate Analysis wilkox doPCoA A convenience function for drawing PCoAs wilkox ggfittext 🔠 ggplot2 geoms to fit text into boxes wilkox gggenes ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2 wilkox treemapify 🌳 ggplot2 geoms for drawing treemaps wilkox unionplot Venn-like representations of overlap between groups wilkox wilkoxmisc Miscellaneous R functions willbmisled lakescape willbowditch knitrCache R Package for easy loading of cached data produced by knitr willbowditch ratpack helper functions for rapid installation of packages to an empty packrat willbradley acctR An R package for simply formatting numeric values as currency. willdrysdale FEATalpryork willdrysdale wsdmiscr Miscellaneous functions used for handling timeseries data and for producing plots using the openair platform williamcha pwrAB Power Calculations for AB Testing williamdeleo psd williamorim TSR Template de R Markdown para relatórios estatísticos williampeterpaul newinfluxdbr williamson myFirstPackage williazo gps.continuousnav Functions used for running generalized propensity score methods with a continuous treatment, where treatment is assigned at the highest level in study. williazo rwindow.baseball R package for analyzing the length of a teams window in MLB. Pulls data from baseball-reference williewheeler multistl willpearse example_rworld willpearse grabr *THIS REPOSITORY HAS NOW BEEN SUBSUMED BY ropensci/fulltext* willpearse natdb Not a Trait Database willpearse pez Phylogenetics for the Environmental Sciences willpearse suppdata Grabbing SUPPlementary DATA in R willpearse test willpearse willeerd Will's Eco-Evo R coDe! willrussifp RPackageCoursera The final project for "Building an R Package" on Coursera willtownes vamf Varying-Censoring Aware Matrix Factorization R package wilmermunoz ModisDownload Descarga de productos MODIS, mediante R wilsoncai1992 adaptest Data-adaptive testing under high-dimensions wilsoncai1992 fixedHAL wilsoncai1992 onestep.survival Treatment-specific survival curve estimation via one-step TMLE algorithm wilsonfreitas R-bizdays Business Days Calculations and Utilities wilsonfreitas R-fixedincome Fixed income tools for R wilsonfreitas R-marketdataBR Tratamento de arquivos de utilizados no mercado financeiro brasileiro wilsonfreitas numbersBR Validations, comparisons and formatting for brazilian numbers: CPF, CNPJ, and others. wilsonfreitas rbcb R interface to Brazilian Central Bank web services wilsonfreitas rbmfbovespa Tratamento de arquivos públicos disponibilizados pela BM&FBovespa wilsonfreitas sqliter SQLite helper functions to make data munging less miserable in R. wilsonfreitas transmute Compact text parser wilsontom ACCEST Classification and feature selection of high dimensionality data wilsontom FIEmspro FIEmspro wilsontom FIEtools Tools for Flow Infusion Electrospray Ionisation (FIE) Mass Spectrometry (MS) metabolomics data wilsontom LCPRO Processing and analysis of LCMS metabolomics data wilsontom MRMConverteR convert MRM-MS .mzML files to LC-MS style .mzML wilsontom MSdata Example MS data for testing, developing and optimising wilsontom fatsecretR R Client to the FatSecret REST API wilsontom forestControl Approximate False Positive Rate Control in Selection Frequencies for Random Forest wilsontom hmdbR search the Human Metabolome Database from the R Console wilsontom lipidmaps R Interface to the LIPID MAPS RESTful API wilsontom metProc Functions for pre-processing metabolomics data sets wilsontom metRF Binary random forest classification and regression for OMICS level data sets wilsontom metproc helpers for pre-processing metabolomics data sets wilsontom multinome Wrappers and functions for analysis of non-targeted metabolomics data wilsontom mzCorrecteR Correct m/z values in .mzXML files wilsontom pickeR simple chromatopgraphic peak picking wilsontom qqqMS helper for xcms processing of MRM-MS data wilsontom rawReadeR R / C++ API to Thermo's MSFileReader wilsontom sRm minimal parser for SRM-MS data wilsontom uvR Feature detection for Liquid Chromatography Diode Array Detector (LC-DAD) data wiltonkiss git-intro wiltonkiss r-package wiltonkiss wil r package wind22zhu BioMedR generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions. wind22zhu enpls1.2 wind22zhu rDNAse windyzn urinaryDBP Analysis for my Master's thesis work on urinary vitamin D binding protein loss in patients at risk for diabetes. wingtham FARSR FARSR Program wingtham NOAA wington tsoutlier outlier detection package for time-series data (not for public use ) winnenbr GEA [in development] winnie0521 qckit winnie0521 qckitrna wipperman wipperman Microbiome functions for Unix, R, and Python wirawara BgeeDB An R package for Bgee database wireservice lookupr Fetch common lookup tables and join them to your data. (A port of agate-lookup to R.) wiscstatman GammaRank calculate the probability that a set of independent but not identically distributed gamma (or normal) variates attains a certain order wiscstatman Rolemodel R package for gene-set analysis, deploying the multi-functional analyzer (MFA) wiscstatman rvalues an R package to calculate r-values for ranking and selection in large-scale inference wjakethompson rhyme Rhyme Detection With R wjakethompson rhymeR An R package for detecting rhymes in written text. wjakethompson wjake Personal R package for various things wjawaid bglab Gottgens Lab single cell RNAseq analysis pipeline wjawaid enrichR An R interface to enrichR wjawaid gatepoints R package allowing users to easily select points on a plot freehand wjawaid roots Reconstructing ordered ontogenic trajectories wjburton Movie_Network Generate visual network graph connecting actors and actresses wjhopper FAM Forgetting and Memory: 3 experiments on retrieval practice effects wjhopper PCR Primary and Convergent Retrieval Model wjhopper parameters Bounded parameter objects implemented with S4 classes wjhopper whoppeR Day to day R utility functions wjhrdy foregen (fo)recast (re)gressor (gen)erator wjones127 thesis Senior thesis on statistics of routes wjones127 tidystan R package for tidy data frames from Stan output wjrl RBioFabric An R implementation of the BioFabric network visualization tool wjschne APA6 Create APA6 formatted tables in Rmarkdown wjurkowski ONION Network based integration of transcriptomics and metabolomics data wkapga keyrateduration R package for calculation of keyrate duration of fixed income assets wkc1986 infograf R functions wkmor1 doi2bib wkmor1 msmod Fitting multispecies models wkmor1 rzonation run zonation from r wkmor1 voiConsPlan wkmor1 voiWoodland wkostelecki circly Package for chord diagrams wkostelecki ezplot Package for generating common plots. wkostelecki newpackage description wkostelecki wtils Utility functions wkp4318 won wl5 wfaculty wlandau-lilly drake A scalable solution for reproducibility and high-performance computing wlandau-lilly eply Like apply(), but for batches of quoted expressions. wlandau JeffLeekMeme True facts about Jeff Leek: https://yihui.name/en/2017/04/jeff-leek-facts/ wlandau appPackage This Shiny app is a package! This package is a Shiny app! wlandau downsize Toggle the test and production versions of your workflow with the flip of a global option. wlandau fbseq A fully Bayesian, CUDA-accelerated method of analyzing RNA-seq data wlandau fbseqCUDA CUDA-accelerated backend of fbseq for the MCMC. wlandau fbseqComputation wlandau fbseqDebug debug fbseq wlandau fbseqOpenMP Light backend of the fbseq package. Makes use of parallelism through OpenMP if R is compiled with OpenMP support. wlandau fbseqStudies comparison study for fbseq wlandau grapes Turn R functions into binary operators. wlandau parallelRemake Accelerate make/remake workflows in R. wlandau parsetools tools for parsing R code wlandau rcppcuda A skeleton R package that uses Rcpp, CUDA, and s4 classes. This is a learning exercise. wlandau remakeGenerator Generate large remake-style workflows with minimal code. wlandau remakeInPackage Tests if github.com/richfitz/remake plays nicely with reproducible workflows implemented as R packages. wlandau wild Wildcards for data frames. Better than expand.grid() (when completed). wlandau wildcard Templating for data frames. wlandau workflowHelper Analyze multiple datasets in multiple ways with a smooth, efficient, parallelized, reproducible R workflow. wligtenberg covrtest This is a small example of an issue that I encountered wlktan LireNLPSystem wlktan surrogateSampling wmay dwnominate A convenient R interface to Keith Poole's DW-NOMINATE fortran program wmay pad637utils Function(s) to help with the R twitteR package wmay tunnelr Control SSH tunneling in R wmchad BayesKnockdown BioConductor BayesKnockdown package wmmurrah IntroRegression wmmurrah Mplus2texreg prepare Mplus output for use by texreg to create LaTeX regression tables wmmurrah SimulationTutorial wmmurrah corrplot corrplot from github wmmurrah cpar Repository for cpar R package wmurphyrd colorplaner ggplot2 Extension to Visualize Two Variables Per Color Aesthetic through Color Space Projection wmurphyrd fiftystater wmurphyrd monkeywrangler R package for importing, summarizing, and visualizing Survey Monkey exports wmurphyrd shinyaframe 🌌WebVR Data Visualizations with RStudio ‘Shiny’ and Mozilla ‘A-Frame’ wojciechoblak varbinq wokai rbamtools Development repository for CRAN rbamtools package wokai seqTools Development repository for Bioconductor seqTools package wokai spliceSites GitHub site for Bioconductor package spliceSites wokai sqliteTools R package using a C++ wrapper class for SQLite conaining an expandTable function wolass AdheSaur wolass anareg The anareg package provides functions to alanyze the anaphylaxis registry database wolass rlabbook An minimalistic electronic lab notebook using Github and R wolfganglederer simex The simex Package -- This pakage for R implements the simex procedure developed by Cook & Stefanski for dealing with measurement error models, as well as the mcsimex for misclassified data developed by Küchenhoff, Mwalili and Lesaffre. wolfsonliu enrich R package for differentiated expressed gene enrichment analysis. wolski FinnProt FinnProt 2017 wolski findMFDIA wolski go_playground wolski imsbInfer R-package for the quantitative analysis of SWATH-MS data wolski imsbInfer2 No description or website provided. wolski mouseTissueCompare wolski pairseqsim old 2006 pairseqsim package wolski pairseqsim2 New class with references based pairseqsim wolski quantable Streamline descriptive analysis of quantitative data wolski topGOUniProt Uniprot ID goterm mappings for package topGO wonsang easyFMRI Functions for ROI segmentation in EPI sequence. wonsang wfGn Estimation of Hurst parameter of a fractional Gaussian noise on the basis of the modified Whittle maximum likelihood estimator in presence of outliers or an additive noise woobe bib "Blend It Bayes!" Data Mining Toolbox woobe deepr An R package to streamline the training, fine-tuning and predicting processes for deep learning based on 'darch' and 'deepnet'. woobe ggsports ggplot2 geoms, themes and scales for sports data visualisation. woobe predictr Streamlined routines for developing and evaluating predictive models in R. woobe rCrimemap This is the next generation of CrimeMap! woobe rPlotter Wrapper functions that make plotting in R a lot easier for beginners. worldpopglobal wpUtilities Data Analysis and Modeling Package from WorldPop worldpopglobal wpgpCovariates wpgpCovariates Package for downloading raster datasets from WorldPop FTP wpeterman ResistanceGA Optimize resistance surfaces using Genetic Algorithms wpeterman ResistanceOptimization R package to optimize continuous resistance surfaces wpeterman biophys R package to implement spatially explicit biophysical models wpeterman ssmc Functions to assess source-sink population status using Monte Carlo simulation of demographic networks wpetry IPMpack2 R package for integral projection models (cloned from IPMpack v.2.1 on CRAN) wpgp wpUtilities wpgp wpgpCovariates wpmarble wpmarble R package for functions I use ofen wrathematics CompiledExamples Using various interfaces to compiled code in an R package. Includes C, C++, and Fortran. wrathematics RRegularity wrathematics Rdym "Did you mean?" for R. wrathematics Rfiglet R bindings for figlet wrathematics Rglm2 A high-level interface to the linear model fitters available in the linmod package. wrathematics Romp Basic examples using OpenMP with R, for C, C++, F77, and Fortran 2003. wrathematics TAG Text Analytics Gateway wrathematics argon2 R bindings for the argon2 secure password hashing algorithm. wrathematics band Banded matrices for R. wrathematics check4net A simple R utility for continuously checking for internet access. wrathematics cladoRcpp Nick Matzke's cladoRcpp package wrathematics coop Fast covariance, correlation, and cosine similarity. wrathematics dequer A deque for R. wrathematics f2cp Automatically generate C prototypes from Fortran subroutines wrathematics fastercaster Just an experiment wrathematics getPass Password function for R with masking (where supported) wrathematics getip IP address lookup from R wrathematics gmhelper A bunch of generators for RPG game masters wrathematics hackR An R package for creating 90's movie hacker names. wrathematics icomp wrathematics idgaf wrathematics kbhit wrathematics kernelFactory Michel Ballings' package for an Ensemble of Kernel Machines wrathematics libexpm A library for matrix exponentiation. wrathematics lineSampler Sample a file by line; quickly read a subsample of observations from a large csv file. wrathematics linmod Linear and generalized linear model fitters. wrathematics lptools Linear Programming Tools wrathematics meanr A sentiment analysis package for R. wrathematics mec Missy Elliott Cryptography wrathematics mops wrathematics ngram Fast n-Gram Tokenization wrathematics openblasctl Control from R the number of threads used by OpenBLAS wrathematics pbdCS A set of utilities for interactively using pbdR. wrathematics pbdDEMO Demonstration scripts and utility functions for the pbdR system of packages. wrathematics pbdDMAT Distributed matrix classes and methods for the pbdR project. wrathematics pcapack wrathematics remoter Control a remote R session from your local R session. wrathematics rgutenberg Random book from Project Gutenberg wrathematics ssvm Simple SVM, with R bindings. wrathematics stat201 Shiny app for UTK's stat201 course wrathematics tfca Transfinite Cardinal Arithmetic wrathematics timeRtypeR A little toy R package to measure typing speed wrathematics xkcdpw Portmanteau-style passwords as in the famous XKCD comic. Uses a web-scrape of a random Wikipedia page for the 'dictionary'. wrathematics yalda Yet Another LDA package for R wrbrignon BrignonPackage wrbrignon brignon wrbrooks SGL an adaptation of the SGL package to allow observation weights wrbrooks adalasso Adaptive lasso for logistic regression and p>n wrbrooks adapt Adaptive lasso for linear regression and p>n wrbrooks brooks Random utilities wrbrooks cox Spatial random effects analysis for cox process models wrbrooks galogistic Genetic algorithm for logistic regression wrbrooks genetic Genetic algorithm wrbrooks gwselect wrbrooks lagr Local, adaptive, grouped regularization wrbrooks latent Estimate a latent variable model for bacteria counts in surface water wrbrooks pbp play-by-play data parsing wrbrooks spls.wrap Wraps the SPLS package for use via a Virtual Beach-like interface wreckord pknca-pil No description or website provided. wrighth dqatest dqa stub for testing wrightrc flowTime Annotation and analysis of time-lapse and steady-state flow cytometry data wrightrc r1001genomes Shiny app and R package to facilitate exploration of the 1001 genomes dataset wsteenbeek sppt An R package to run Andresen's Spatial Point Pattern Test wstolte DelwaqR Functionality for pre- and postprocessing of Delft3D - Water Quality modelling software (Delwaq) wstolte ShinyMeetVeersemeer R package reproducible reporting Veerse Meer wsu-wacs waminet Spatio-Temporal Network Analysis Tool built with R wtaoyang ABSSeq Differential expression analysis for RNA-Seq wtcooper dplyrStrWrap R package: simple wrappers from Sebastian Kranz (gist.github.com/skranz/9681509) in package form for quick install wtcooper glmToJava R package: takes a coefficient table and converts it to a Java (POJO) file wtcooper icdcoder R package: ICD-9 and ICD-10 code utility functions and datasets wtcooper modUtils R package: collection of utils for model building and tuning. wtcooper vizrd R package: Visualizations for R data and models wtcooper wtcooper.github.io wtingda Williams-College-Class-of-2017-Statistics wuergh eRle Various R functions for personal use wuergh erleR Various R functions for personal use. wuergh hedgehog Various R functions for personal use wuhsiang bayesmr Bayesian statistics in marketing research wulingyun CRF R package for Conditional Random Fields wulingyun CopTea R package for Combinatorial OPTimization based Enrichment Analysis wulingyun Corbi R package for Collection of Rudimentary Bioinformatics Tools wumingyue123 optionfunctions Black Scholes option functions wundercar wundR package for speeding up analytics in Wunder Carpool wurst-theke bratwurst R package for wrapper functions, preprocessing, NMF and postprocessing wush978 DSP2014R wush978 DSRTeacher Helper package for teachers wush978 DataTaiwan R package for accessing all repository of Taiwan wush978 DemoAutotoolWithRoxygenize wush978 FastROC Fast Computation of ROC Curve in R wush978 FeatureHashing Implement feature hashing with R wush978 GooglePerfTools Demo of Profiling Rcpp Package with Google Perftools wush978 HsTrust A wrapper of tron in LIBLINEAR wush978 LargeScaleUtility Some utility function for large scale data wush978 RCIDemo wush978 RCMake generating CMakeLists.txt for R extension wush978 RMessenger Send message via XMPP protocol with R wush978 RMongoBinary R package to handle R object in mongodb in binary wush978 RPPGen Generator of Point Process wush978 RReadWriteBigDataFrame Write list object boosted with openmp wush978 Rcereal R package provides cereal header files wush978 RcppAlloc Implement an memory allocator(new, delete) with R_Calloc and R_Free wush978 RcppModuleInheritance Test the class inheritance of C++ class exposed by Rcpp Module wush978 RcppSerialization Serialize external pointer in R with boost serialization. wush978 RembedPy Embed a python in R wush978 Rhiredis (This project is only experimental) Rhiredis is a wrapper of hiredis, which is a minimalistic C client library for the Redis database. wush978 Rlibstree libstree wrapper wush978 Rtwmap A R package for twmap wush978 Rython Embed python in R wush978 RzmqJobQueue Implement a job queue with rzmq wush978 TestPthreads Test the Pthreads and Rcpp wush978 TimeSeriesSimilarity Implement some methods to evaluate similarity of time series wush978 TravisDemo Demo of R and Travis-CI (https://rpubs.com/wush978/r-travis-ci) wush978 WushUtility Some parallelized utility R function for my self. wush978 bibtex wush978 gumbelRegression wush978 pbdMPILogging Easy Logging Messages under pbdMPI wush978 pvm Package Version Manager for R wush978 rdnashape wush978 rpvm R Package Version Manager wush978 supc The Self-Updating Process Clustering Algorithms wush978 survrecExtra wvanwie ragt2ridges Ridge Estimation of Vector Auto-Regressive (VAR) Processes wvictor14 pepper misc functions that I wrote wviechtb metafor A Meta-Analysis Package for R ww44ss ensure.libraries a helper function ensuring required libraries are available. wwbrannon ado An implementation of Stata's ado language in R wwbrannon rstata An implementation of Stata's ado language in R wwbrannon schemeR Ports of Scheme features to R wwbrannon sqlscore R utilities for generating SQL queries from model objects wwrechard screening An R package for efficient variable screening method wwrechard weierstrass Combining posterior samples from multiple subsets wwwjk366 rCDL wyguo RLowPC R function to construct Relevance Low order Partial Correlation gene networks wyguo RLowPCor R function to construct Relevance Low order Partial Correlation gene networks wyguo TSIS TSIS: an R package to infer time-series isoform switch of alternative splicing wzhranran ACReporting It's an R package which I write for ACTesting. It does scoring, IDR prep and equating. wzhy2000 Funmap2 No description or website provided. wzhy2000 fgwas wziel pl.edu.pw.elka.alhe16l.satelita wzthu ATACFlow wzthu ATACpipe wzthu esATAC Bioconductor package: An Easy-to-use Systematic pipeline for ATACseq data analysis wzthu wzzw x13org x13binary R Installer Package for Pre-Built X-13ARIMA-SEATS Binaries x265zhan PWS Personal Weather Station xanadunf matchbook This R package provides some simple functions to enable interaction with the Matchbook.com RESTful API service. xandriaw ingenuiti specific functions for ingenuiti data xanhuang RTest xaranke datalintr An R package to lint data (alpha, WIP) xavier-gutierrez energy.markets R Package detailing data processing and analysis of electricity generation/investment xavierdidelot EpiPhylo Automatically exported from code.google.com/p/epiphylo xavierdidelot TransPhylo Reconstruction of transmission trees using genomic data xavierdidelot o2mod.transphylo outbreaker2 module using the TransPhylo model xbmarx r_coursera_fars xbsd rxdsapi2 xdomingoal erah-devel eRah development version. For downloads, please use CRAN xetaro Farsdata-Project xfim ggmcmc Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference xfwang gskat GEE Kernel Machine Test for family data xgsu WOCR R Package for Weighted Orthoginal Components Regression (WOCR) models xgsu coxphMIC Sparse estimation of Cox PH models by minimizing approximated information criteria xgsu glmMIC Sparse Estimation of GLM via MIC (Minimum approximated Information Criterion) xhdong-umd ctmmweb ctmm web app packed in a package. Testing repo before migrating to official repo. xhtai cartridges xhudik CSOBReader xia-lab MetaboAnalystR R package for MetaboAnalyst xiamaz flowProc Flowcytometry processing with flowCore and fast visualizations with flowViz xiangfstats GenieR Inference of demographic history from phylogeny xiangfstats beagleRRRRRR xiangjiexue tools xiangzhou09 hIRT Hierarchical Item Response Theory (IRT) Models xiaodaigh disk.frame A disk stored data structure for batch processing of large files xiaodiansun AdjMatrixMinimalDepth xiaodiansun ID-Converter xiaoguang1988 ExpRPkg Try an example how to make R package using Github xiaolicbs SamplyzeR xiaolicbs genotypeQC xiaolicbs genotype_qc xiaotianzhu icamix xiaozhouw ATC xieguigang GCModeller.R GCModeller CLI to R binding xieguigang GCModeller.cli2R GCModeller CLI to R binding xieguigang visualbasic.R Classical visualbasic language function in R language xinchenpan Coursera-interactive-python- xinchenpan Coursera-regression-model xinchenpan Developing-data-science-products Coursera Johns Hopkins data science specialization course 9 xinchoubiology RGallery A example of simple R package xinchoubiology RcppGLM A Rcpp-CUDA framework for Parallel Linear Model Learning(RcppGLM) xinchoubiology RcppTinyex Tiny Extension of R based on Rcpp xinchoubiology Rcppsva Rcpp Integration Surrogate Variable Analysis xinyaofan foofactors xinye1 xltools This is an R package with randomly custom function, commands, and constants that I have found to be useful in my day to day work xinying17 FeatureCalc Feature vector calculus xinying17 FeatureCalcV1 classification xinying17 FeatureV2 xinying17 FeatureV3 xinzhou1023 dlmpanel A package for Dynamic Linear Model on panel data in Marketing-Mix Modelling xinzhou1023 lmdecomp A package for multiplicative model decomposition. xinzhou1023 nbcont A package for Naive Bayes Classifier of which features are continuous random variable xinzhou1023 shrinkest A method of Bayesian Shrinkage Estimator xizhiming C3_test c3_test_01 xizhiming Recharts use Echarts in R xizhiming RechartsCustom (old)use echarts in R and shiny xizhiming filterGroup 组合输入框 xizhiming redLip xluo11 xxIRT R package for item response theory xmarquez AuthoritarianismBook Replication Package for the Book Non-Democratic Politics by Xavier Marquez xmarquez PoliticalDatasets An R package for cleaning datasets I use often and useful functions I have created for working with them xmarquez QuickUDS Extend the Unified Democracy Scores Backwards and Forwards in Time easily xmarquez vdem xons chipMap xpingli DraAnno DraAnno function xpingli GOGOgadget A package designed suitable for Deinococcus radiodurans xprimexinverse AMECO R package for downloading the (latest) AMECO database xprimexinverse pxRmisc An R package of miscellaneous helper functions for use with the pxR package xprimexinverse statbanker R package for downloading data from CSO StatBank (and other Public Sector databases) xraynaud svg2psp R package providing a set of function to convert SVG files into spatstat psp objects xrobin DeepLearning R package for deep learning xrobin mnist Makes the MNIST dataset easily accessible in R xrobin pROC Display and analyze ROC curves in R and S+ xrobin testParallel Tests testthat tests with the parallel package xrobin xavamess xryanglab xtail Genome-wide assessment of differential translations with ribosome profiling data xslates GoL Common functions for GoL xslates theme_x ggplot2 custom theme xslates themex ggplot2 custom theme xsultan activity_recognition Motsai Utilities Package xsultan motsai Motsai Utilities Package xtsvm CancerSubtypes Cancer subtypes identification, validation and visualization based on genomic data xtsvm miRBaseConverter miRBaseConverter is designed for miRBase conversion between miRNA Names, Accession in different updated versions. xu-hong rphenoscape R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R. xu-lab SINCERA An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis xu1912 EPSLASSO An R package for regression analysis of data from extreme sampling xueligao oneway xueyuancao CCPROMISE CC-PROMISE Effectively Integrates Two Forms of Molecular Data with Multiple Biologically Related Endpoints xueyuancao POST A framework for set based association analysis in high dimensional data xulong82 bayes.glmm R package: bayes-glmm xumaoxuan sequence xuqiao93 PowerExplorer A new tool under development xurannancy MicroMacroMultilevel xuyiqing gsynth Generalized Synthetic Control Method xuyiqing interflex Multiplicative Interaction Models Diagnostics and Visualization, Producing Flexible Marginal Effect Estimates xuyiqing interplot Marginal Effects Diagnostics and Visualization xuz1 ENmix xuzhougeng zgtools xvacode xVA Calculates Credit Risk Valuation Adjustments xxxw567 MasterRcap xxxw567 Rhomework xxxw567 legalwordproc xxzcool scoremodel Credit scoring modeling toolbox based on R xylimeng BayesBD Bayesian boundary detection for images xyomics bugpower Generate power analysis report for microbiome dataset xyz5074 DKAT R Package DKAT xzhaopsy MIRT y2analytics y2clerk Our Resident Tabulation Expert yajiez datomer Collect and organise the small datasets for future use yakuan-chen fosr.vs Implements an iterative algorithm for function-on-scalar regression with variable selection by alternatively updating the coefficients and covariance structure. yamano357 rJaNLP yamano357 rTinySegmenter TinySegmenter for R yamhochi clstrplnr DEC cluster planner R package yamjonathan Linreg yanchaoluo foofactors yandiru shinyListGroup A bootstrap selectable list-group (http://getbootstrap.com/components/#list-group) yang0117 RGRP yangjl SNPcalling yangjl farmeR An R package to submit pipeline on farm for genomic and genetic analysis. yangjl findpos yangjl huskeR An R packages to generate genomic and bioinformatic pipelines. yangjl imputeR Impute GBS genotype yangjl maizeR An R package for maize genomic and genetic analysis. yangjl md2pdf yangjl pseudoRef Make Pseudo-Reference Genome from VCF/BCF yangjl quantgen plant quantitative genetics yangmuzhi logie logistic in Industry Engne yangsup mscatdif some functions yangsup pusgnay some functions yangx227 SimmonsResearchR yanhann10 mondrianify Generate freestyle paintings like Piet Mondrian's yanjunzan BE yanlinlin82 Rbionano R package for BioNano data manipulation and visualization yanlinlin82 Rvenn R package for venn diagram yanlinlin82 magicR A different way to play with R yanlinlin82 myEDA R package provide daily used functions for EDA yannabraham Radviz A R package for multi-dimensional data visualization yannabraham bodenmiller Profilling of Peripheral Blood Mononuclear Cells using CyTOF yannabraham cytoCore A R package to handle mass cytometry (CyTOF) data yannabraham hilbertSimilarity A R package to compute similarity between high dimensional datasets yanwu2014 swne Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets yanxianUCSB gen5helper yanxianUCSB jascor yanxianUCSB yxhelper yanxianUCSB yxplot R package for ggplot2 publishable theme sets yanxianUCSB yxtecanm200helper tecanm200helper yanyachen FinCovRegularization Covariance Matrix Estimation and Regularization for Finance yanyachen MLmetrics Machine Learning Evaluation Metrics yanyachen arimaMisc Time Series Analysis Miscellaneous Tools yanyachen rBayesianOptimization Bayesian Optimization of Hyperparameters yanyachen rFTRLProximal FTRL-Proximal Online Learning Algorithm yanyachen rHyperband Hyperband algorithm for Hyperparameter Optimization yanyachen rThresholdout Thresholdout Algorithm yaojenkuo stockreenr yaolu DNLC DNLC: Differential Network Local Consistency Analysis yaoyong02 geno2proteo create this repository for submitting the package to BioConductor yapweiliang DorsetStats R package to make stats about Dorset in a manner that I want yapweiliang GoogleDistance r function to query the Google Maps Distance Matrix API yapweiliang IndexMultipleDeprivation Index of Multiple Deprivation Stuff to make life easier with IMD data yapweiliang NHSPD NHS postcode directory stuff yapweiliang codepoint R package to compile/convert unzipped OS Code-Point Open data into a form that I want yarai-tokyo rddmmse rddmmse for estimation and inference for the RD design yasong PRISMA ASAP sources. Protocol reverse. fork from yasserglez cec2005benchmark Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization yasserglez copulaedas Estimation of Distribution Algorithms Based on Copulas yasserglez oreilly_data_science_salary Shiny app for the O'Reilly ‘2015 Data Science Salary Survey’ models yasserglez vines Multivariate Dependence Modeling with Vines yasui-salmon CQR censored quantile regression with three-step estimator yasui-salmon stRatification full sample/sample splitting estimation of ATE for subgroups yatish-patil cancerMix yatish-patil iDissect yatish-patil processTPM yatish-patil screenExpr yatish-patil virtualMicrodissected yatpat limma_voom_DE yatpat probeENSGgeneMap yavorska AchillesPackage Tools for Achilles data analysis in R. yavorska TenXAnalysisPackage Tools to summarise and plot the 10xGenomics 1.3 Million Brain Cell Data Set ybbsharma sofars2 ybkamaleri aimPlot Create a pie like plot to show completeness of various aims in a project ybkamaleri bdr Nasjonalt medisinsk kvalitetsregister for barne- og ungdomsdiabetes ybkamaleri nbReg ybkamaleri rreg Data visualization for Norwegian Health Quality Registries with R ybrugnara PhenoClass ybucla commFunc comm functions used in work ybucla goenri Gene ontology enrichment analysis and plot ybukhman SynergyScreen Design and analysis of medium-throughput compound synergy screens ycl6 BSgenome.Bdistachyon.JGI.Bd3.1 Full genome sequences for Brachypodium distachyon (JGI version 3.0 assembly) ycl6 TxDb.Bdistachyon.JGI.Bd3.1.geneexons TxDb object for Brachypodium distachyon (JGI v3.1 annotation) yclough ecodeal Collection of helper functions for modelling biodiversity and ecosystem services ycs25 betaDiffu Simulation and Estimation yduan004 drugbankR yeagle BWiener Modelling functions for the Wiener diffusion model, based on Bayesian Methods (MCMC sampling). yeagle RAmoroso RAmoroso yeagle RWiener Clone of RWiener repository on SF: https://sourceforge.net/projects/rwiener/ yeamin1 empty yeamin1 glass-transfer yeamin1 inzight yeamin1 map_drawing yenlaw yenlaw_farsfunctions yesmaster PracticaTwitter Pràctica final per a la sincronització amb Twitter yeukyul lindia Extension package of linear regression diagonostic plots in ggplot2. yevgenryeznik artool Modeling and simulation of Adaptive Randomized clinical trials yeynaud MosaicAnalysis This packages contains several functions useful for the analysis of 2D othomosaics and orthoprojections. yeynaud VBEstimatorPackage A package with two functions, one to estimate the Von Bertalanffy-type length-at-age curve parameters in fishes, the other to simulate length-at-age curve samples, useful for power analysis and teaching. yezhaoqin morningStarAnalytics R package for MorningStar mutual fund dataset analysis (R) yezhengSTAT permseq_0.3.0 permseq modified in July 2017 yfyang86 hamimc Hamiltonian Monte Carlo in R yfyang86 kmc Kaplan Meier estimator with Constraints yfyang86 optimise2 A better optimise function yfyang86 paftoga AFT model ygu427 HDSSM R package for state space model ygu427 myProj Watch ygu427 seqAlign ygu427 yguR my first repository yguitton MeHaloCoA R package dedicated to halogen-containing compounds detection in LC-hrMS yhat banditr yhat db.r db.r provides a way to interactively explore databases yhat demo-MYSQL-model yhat demo-twitter-tagger yhat structr python-like lists and dicts in R yhat yhatr wrapper for the yhat API yhoogstrate FuMaR The R wrapper for FuMa, depending on Chimera yht KalkulatorPajak Indonesian Tax Calculator, R Package yhu5 MyFirstPackage Coursera Building R Packages Final Assignment yibochen Renren yibochen weiBor yihui MSG Modern Statistical Graphics (my Chinese book) yihui Rd2roxygen Convert Rd to roxygen documentation yihui animation A gallery of animations in statistics and utilities to create animations yihui crandalf Check all reverse dependencies of your R package on Travis CI yihui formatR Format R Code Automatically yihui fun Use R for Fun yihui highr Syntax Highlighting for R Source Code yihui iBUGS An Interface to R2WinBUGS by gWidgets yihui knitr A general-purpose tool for dynamic report generation in R yihui mime Map filenames to MIME types yihui printr Some (magical) printing methods for knitr yihui recharts An R Interface to ECharts yihui rlp An Example of Using Literate Programming for R Package Development yihui rmini A minimal R package with examples of most common components yihui rnotebook R Notebook based on JSON and R Markdown (experimental) yihui runr Run external programs from R (experimental) yihui servr A simple HTTP server in R yihui testit A simple package for testing R packages yihui tikzDevice A R package for producing graphics output as PGF/TikZ code for use in TeX documents. yihui tinytex A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live yihui xaringan Presentation Ninja 幻灯忍者 · 写轮眼 yihui xfun Xie's miscellaneous R functions yijin71 statg012 r package yijutseng DHAnalysis R package for medical/health/clinical data analysis yiluheihei NFP Network fingerprint: a knowledge-based characterization of biomedical networks yiluheihei NFPdata gene similarity data for NFP R package yiluheihei RevEcoR Reverse ecology in R: http://choyang.me/RevEcoR yiluheihei github_issues_reactions Github reactions of repo issues and comments yiluheihei microbes Tools for analyzing microbiome and metabolomics data yiluheihei test yindeng shinyData A GUI for interactive data analysis, visualization and presentation ying14 yingtools2 Ying's tools for analysis, with particular focus on microbiome data yingboli BayesMDL A Bayesian Multiple Changepoint Detection Approach Using Minimum Description Lengths (MDL) yingboli crib Bayesian Hierarchical Model for CRISPR Data yinscapital echarts-shiny-reference As an R package, ECharts2Shiny can help embed the interactive charts plotted by ECharts library into our Shiny application yinscapital googleAuthR-reference yinscapital retina-analysis-reference yinscapital sat-locat-reference-team-lucc The teamlucc package is designed to facilitate analysis of land use and cover change (LUCC) around the monitoring sites of the Tropical Ecology Assessment and Monitoring (TEAM) Network. The TEAM Network is a global network of sites in tropical forests wth standardized real-time data collection designed to measure tropical forest responses to climate variability and change, land cover and land use change, and other threats. yinscapital searchConsoleR-reference yinscapital yolo-caleblareau-reference yiorfun PhenoPro yishaishimoni phenoClust R implementation of phenoClust yishingene big2utf8 convert file encoding from big5 to utf8 yishingene cats1 yishingene filebind for R package yitang RExercise yitang mex2 yitang yiR yiufung skeleton-pkg Skeleton project for demo yixuan ADMM Solving Statistical Optimization Problems Using the ADMM Algorithm yixuan Layer An R Graphics Device with Layer Support yixuan R2SWF Convert R Graphics to SWF (Flash) yixuan R2SWF-archive Convert R Graphics to SWF (Flash) yixuan RSpectra R Interface to the Spectra Library for Large Scale Eigenvalue and SVD Problems yixuan RSpectraLink Linking To RSpectra yixuan RcppNumerical Rcpp Integration for Numerical Computing Libraries yixuan fdaplus Enhancement of the 'fda' package for functional data analysis yixuan fontemoji Plotting Emojis in R Graphs yixuan fontr Extracting Glyphs From Font Files yixuan prettydoc Creating Pretty HTML From R Markdown yixuan rARPACK Solvers for Large Scale Eigenvalue and SVD Problems yixuan rationalfun An R package to manipulate rational functions yixuan recosystem Recommender System Using Parallel Matrix Factorization yixuan showtext Using Fonts More Easily in R Graphs yixuan showtextdb Font Files for the 'showtext' Package yixuan sysfonts Loading Fonts into R yizhenxu TVLT TVLT yizhenxu cMPA pooling algorithm yizhenxu mMPA pooling algorithm yizhexu rsocial R social media adds generator yizhexu weatherawhere R package for aWhere weather API yjalbert htmltools yjalbert profvis yjalbert shinydashboard ykashou92 SimpleRegex A very minimal and simple R Package. Contains functions that perform Regex operations. ykimmate14 skimthru provides convenient functions to bain basic understanding of data. The package can be used as supplementary to basic R package's summary(), str() and dplyr package's glimpse() function. ykong2 MADSEQ MADSEQ-R package for mosaic aneuploidy detection ykv001 FARSpckgwk4 Building R Packages - final Project Coursera ykv001 buildnewgeomwk4 Peer-graded Assignment: Build a New Geom ykv001 ykvdpcap MSDR Capstone - NOAA Earthquake Visualizations yluo24 Linreg Creating a R-package for 260 ymaheshreddy nsedata ymatts D3M ymatts PhyC Clustering cancer evolutionary trees ymatts SSRM ymatts phyC Clustering cancer evolutionary trees ymattu MlBayesOpt R package to tune parameters for machine learning(Support Vector Machine, Random Forest, and Xgboost), using bayesian optimization with gaussian process ymattu rjumanpp R interface for JUMAN++ ymd526442121 Rproject_shiny ymd526442121 spark ymmah AzureSMR R Package for managing a selection of Azure resources. Targeted at Data Scientists who need to control Azure Resources without needing to both Administrators. APIs include Storage Blobs, HDInsight(Nodes, Hive, Spark), ARM, VMs | 青天 yocra3 LDclassifier yolanda93 yelp_challenge_ui Data Analytics and Visualization with Yelp dataset. Yelp is a service that allows users to review businesses and check other users reviews. yongcha entroPD Anonymization based on Entropy yonghah esri2sf Scrape features from ArcGIS Server REST API and create simple features dataframe yongkee oneSENSE One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE) GUI for analysis of single cell data yoni git_history_visualizer Summarizes and visualizes lines of code for different file types over the history of a git repository. yoni p2plending Analysis of p2p lending data from Lending Club and Prosper. yoni r_we_the_people R package for working with the We The People petition data. yoni streaming_regression_with_r Example of running a streaming regression in R using standard in and biglm. yonicd YSmisc yonicd chunky RStudio addin to wrap script in Rmarkdown chunks yonicd ciderhouse yonicd gdigest yonicd gitLogs yonicd lmmen R package that solves the linear mixed model elastic net yonicd regexSelect Enable regular expression searching of selectize object options in the R Shiny package yonicd rsam RStudio Addin Manager yonicd shinyHeatmaply yonicd shinyghap Shinyapp to search GHAP repository yonicd sinew yonicd vcs querying files, inspecting structures and sourcing script directly from repositories in R yordankagyurdieva fars yorkulibraries yulr Small R helper functions for York University Libraries yoruhyde decomplm A package for aggregating sub-models into main model. yoruhyde grouplasso yoshidk6 PKAEvis yotamshemtov NameSexRace Imputation of demographic characteristics from first and last name (very preliminary code --- use with caution) yotamshemtov estCI youjin1207 fdrreg No description or website provided. youngser VN vertex nomination via seeded graph matching youngser gmmase Graph Spectral Clustering youngser mbstructure R package for our paper "Semiparametric spectral modeling of the Drosophila connectome" youngstreetinitiative AusMacroTimeSeries Australia youngstreetinitiative example example for abs data fetching, processing etc youngstreetinitiative paths a mystery youngstreetinitiative ysi Main YSI Function Library your-highness normR Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling. yoyoismee m2ts ypan1988 rtraj ypark39 testSeungmin ypriverol PRIDE-ProteoGenomics ypriverol cluster-analysis A set of R scripts to analyse the data from PRIDE Cluster ypriverol mzquantml ypriverol pIR Estimation of isoelectric point of peptides and proteins using Support vector machines ypriverol parquet-avro-example ypriverol psi-pi ypriverol scripts yrochat twitterplayssnake Plays snake collectively on Twitter yrosseel lavaan an R package for structural equation modeling and more ys-amms bionexr an R package for integrative network-based analysis of gene somatic mutation and gene expression data to identify cancer drivers ysamwang BCD RICF with Cycles ysamwang ELsem SEM with Empirical Likelihood ysamwang Rchestra Rchestra Package ysamwang mixedMem Variational Inference for Mixed Membership Models ysamwang mixedMemMissing Variational Inference with Missing Data in Mixed Membership Models ysamwang mixedMemMissingMCMC yshen-1 LReview yshen-1 tidy_bibliometrics ysoh286 interactr A 'prototype' R package for creating simple interactive plots in R. ysoh286 xstitch R package for generating cross-stitch charts ysumath1 OHDSITrends Package to analyze trends in medical events at a health-system-wide or national level. ytdai easySVG An Easy SVG Element Generator (R package) ytdai gvmap [R package] An Improved Function to Plot Heatmap of Genomic Data ythzhang R101 ytoren blendML A package with functions to blend machine learning models and GLMs ytoren blendr A package with functions to blend machine learning models and GLMs ytoren meshML A package with functions to blend machine learning models and GLMs yu-shang DDMarker Diagnosed and Detected Markers in Extracellular Circulation yu-shang DDMarkerFAST DDMarker FeAture SelecTion yu-shang DMarker yu-shang DMarkerData yu-shang MBDelta yu-shang QUBIC QUBIC 1.0 yu-shang QUBIC2 yu-shang Qtest QUBIC for testing yu-shang cluster yu-shang delta Δ, DEep Learning biclusTer Algorithm based on gravItation field, (deltohedron, DEep Learning biclusTer algOritHm basED on gRavItatiON field) yu45020 encodedummy Fast Encode Non-Numeric Variables into Dummy Columns yuanli22 RCUDA R GPU computing package by Nvidia's CUDA yuanli22 testing yuanwei my quant research common tools in R yuanwxu TransPhyloC Rewrite function to compute log-likelihood of transmission tree from TransPhylo using Rcpp. yuchang0321 IVQR Instrumental Variable Quantile Regression yuchaojiang CODEX A normalization and copy number variation calling procedure for whole exome DNA sequencing data. yuchaojiang Canopy Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing. yueli-compbio RIPSeeker yuezhengjessica RoboPackage yufree apLCMS fork from https://sourceforge.net/projects/aplcms/?source=navbar yufree enviGCMS GC/LC-MS data analysis for environmental science yufree rgabriel yufree scifetch webpage crawling tools for pubmed, google scholar and rss yufree x13cms yufree xMSanalyzer fork from https://sourceforge.net/projects/xmsannotator/ yufree xMSannotator fork from https://sourceforge.net/projects/xmsannotator/ yufree xsetplus yuifu millefy Millefy: Genome browser-like visualization of single-cell RNA-seq dataset yukai-yang FE provides data sets and functions for the master and PhD course "Financial Econometrics" yukai-yang LTable for those who wanna make quick LaTeX code for tables from the results obtained in R environment. yukai-yang PSTR an R package for testing, estimating and evaluating the Panel Smooth Transition Regression (PSTR) model. yuki0425 BMLSimulations This package allows user to simulate a basic Biham-Middleton-Levine traffic model with two type of cars (red and blue) moving on a two-dimensional grid yuki0425 Digit_recognizer yuki0425 mc R CRAN package to analyze and explore discrete- and continuous time- Markov Chains yumengw utilR yunboouyang VBDP R package to estimate Gaussian sequence and construct linear classifier yunching FRP yunching noaar Working with the NOAA Significant Earthquakes dataset yunching tidymas A collection of R scripts for global macro work yunfantang PhyloScan yunfantang phyloDM yunxileo npar npar package yunzhang813 FUNNEL-GSEA-R-Package Zhang, Y., Topham, DJ., Thakar, J. and Qiu, X. (2017). FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. Submitted to Bioinformatics. yunzhang813 PBtest-R-Package yunzhang813 rGTExNetwork R package - Final Project for BST 550 (Fall 2015) yunzhang813 simDeNet-R-Package yunzhang813 yunr Personal template for R package yupimaki classifytext An R based text classification model yutannihilation DfouR An experimental R package for D4 yutannihilation K9 Affirmative, Master!!! yutannihilation RCesiumBarChart Cesium.js for R yutannihilation RRustFib Rust Fibonacci Calculator yutannihilation Redashr yutannihilation SPARQLDBI SPARQL as a DBI backend yutannihilation TotsuzenOfDeathAddin 突然の死 yutannihilation appveyortest yutannihilation cesiumr Cesium.js for R yutannihilation chartist Chartist.js for R, powered by htmlwidgets yutannihilation choroplethrOsakaCity A map of Osaka city for the use with the choroplethr package yutannihilation dcStockR R bindings for dc.js, powered by htmlwidgets yutannihilation dependencyA Test yutannihilation estatapi R package for e-Stat API in Japan yutannihilation geomclone Clone ggplot2 Layers using "ggplot2_add" (https://github.com/tidyverse/ggplot2/pull/2309) yutannihilation ggPotatoL A prototype of ggHoxoM yutannihilation gghighlight Highlight points and lines in ggplot2 yutannihilation gglabeledcontour geom_contour() with labels yutannihilation gneisschart An R package for drawing charts by Quartz's Gneisschart yutannihilation halfwidthr Convert Japanese alphanumerics (a.k.a. 全角英数) to ASCII alphanumerics (a.k.a. 半角英数) yutannihilation hattnr R Package To Get OAuth Token For Hatena yutannihilation highstockR An R package to draw highstock charts. This is for demonstration purpose of htmlwidgets at 46th Tokyo.R meeting. yutannihilation kntnr R client for kintone yutannihilation kokudosuuchi 国土数値情報ダウンロードサービスWeb APIからデータを取得するためのRパッケージです yutannihilation kokudosuuchiUtils utilities for kokudosuuchi (https://github.com/yutannihilation/kokudosuuchi) yutannihilation mediumr R Interface to Medium API yutannihilation mukiau Face the dark. yutannihilation mxgx metrics-graphics.js for R yutannihilation purrrrrrrrrrrrrrrrrrrrrrrr This package is not related to purrr at all. This package just displays HTTP Cats (https://http.cat/). yutannihilation qiitaddin An RStudio addin to post a knitted R Markdown file to Qiita yutannihilation qiitr R binding for Qiita API v2 yutannihilation rollingsushi I don't mean maki-zushi. yutannihilation roxygen2_NA_crs_test yutannihilation rsound An R interface to Csound yutannihilation testthatJunitRporterTest yutannihilation twihttr A thin wrapper of httr to use Twitter API yutannihilation wunderlistr R bindings for Wunderlist API yuxichau UCUtilities A collection of tools to help with day to day data handling yuyuanchen prfayuyuanc1 yvonneglanville joinXL yvste package yxwang99 alphanorm R alphanorm package yycode DNLC DNLC: Differential Network Local Consistency Analysis yyolanda toolKitty yyounis yyounis yz4 WilliamsFaculty A Package Exploring Williams Faculty Ages yzhang3142 fars yzhang3142 rpkgtutorial yzhang672 SpeCon SpeCon R package to do Spectral Contextualization yzheng74 brownianMotion yzheng74 permseq R package: Permseq yzhizai atlasBasedFiberAnalysis yzhizai gauge yzhizai summaryTemp yzhizai testpack yzhizai trk2DTIexplore yzhlinscau AAfun ASReml-R Added functions yzhlinscau AAfun0s Simple functions for 'asreml' packages yzhlinscau bdRPlus breedR Plus function yzhou63 GA z4ch4ry leadershipdata HRAF Probability Sample entries on leadership with coded variables zabore condsurv R package for conditional survival analysis zabore ehpoly R package to test etiologic heterogeneity with polytomous regression zabore ethet R package to test etiologic heterogeneity zabore ezfun R package to generate tables for clinical projects for use in word R Markdown files zacdav BlackBox Watch zach-binary hrcalc zachary-foster bugtest A reprex zachary-foster fieldguide An nascent R package for creating field guides for a given location zachary-foster flashcards An R pacakge for flashcards zachary-foster qsubmitter An R package to submit arbitrary jobs to a remote SGE cluster zachary-foster quickplots A R package of information-dense, argument-sparse plotting functions zachburg StravaInR zachcp MibigDomainData Nucelotide sequences for Mibig protein domains defined by the PFAM-A hmms zachcp PFAM-protein-data Mapping Between PFAM and Uniprot IDs zachcp biotables import tabular data into R zachcp cdk-depict Simple wrapper for CDK's Depict Module zachcp chemdoodle htmlwidgets for chemdoodle web components zachcp depict depict package for drawing molecules in R zachcp dustmicrobiome dust microbiome data zachcp ggRasterBar raster images as bars in ggplot zachcp nci60-drugtox NCI60 GI50 fro ~60k Compounds zachcp nycmaps New York City maps for use with the maps package, ggplot and ggalt zachcp phylocanvas htmlwidgets for phylocanvas zachcp phylogenetictree phylogenetictree htmlwidget zachcp phylogeo Mapping for Phyloseq zachcp phyloseq-tools zachcp phylotreejs interactive tree drawing for phyloseq zachcp piesonamap draw piecharts on a map with ggplot zachcp quickd3maps-R create maps with D3.js zachcp stackedbars htmlwidget for d3.js-based stacked barcharts zachmayer ZachDE My attempt at a parallel version of DEoptim zachmayer caretEnsemble caret models all the way down :turtle: zachmayer cv.ts Cross-validate time series forecasts zachmayer kaggleNCAA Simulate the NCAA tournament based on a kaggle-format bracket (with predictions for every possible matchup) zachmayer pirouette zachmayer pokeR R pokeR hand evaluator zachmayer r2vec Tools for vectorizing text data in R zachmayer rbm Restricted Boltzmann Machines in R zachmayer segue2 segue2 zachmayer sqlscorer sqlscorer zachmayer test Test R Package zachmayer untappd R wrapper for the Untappd v4 API zachth RinsilicoPCR zackbh bandit_games Demo games for bandit algorithms written in R zackfisher MIIVsem zackfisher robumeta Robust Variance Meta-Regression zaczap bluepRint layout package for ggplot2 zaczap finemapped_eqtls zailchen noaastormevents explore noaa storm database zaj13 proxi zaj13 testpackage test zalazhar Mortality zalazhar to_delete zalmquist UScensus2010 Access and help for manipulating US Census 2010 Shapefiles and Demographic data. zalmquist networkMethods networkMethods zalmquist networkdata networkdata zalperst visualizeprot Visualize the Protein Chemical Property Landscape zamorarr msf R API for mysportsfeeds zamorarr nhlapi R Interface to NHL Stats API zamorarr rcoinbase R interface for making requests to the Coinbase API zamorarr tensorr Sparse Tensors in R zapier awsjavasdk Boilerplate rJava Access to the AWS Java SDK zappingseb analyze_last_fm A small r package to provide the basic last.year analytics also performed by last.fm zappingseb omanymore zarquon42b Morpho R-package providing a toolset for (3D-based) Geometric Morphometrics zarquon42b RANTs Scripts learning/playing with ANTs(R) zarquon42b RResScripts zarquon42b RcppSimpleITK Wrap SimpleITK using Rcpp zarquon42b Rvcg R-package providing mesh manipulation routines from VCGLIB zarquon42b RvtkStatismo Interface between R and Statismo (using VTK) zarquon42b mesheR Meshing operations on triangular meshes (surface registration, selection, visualizations, etc.) zarquon42b meshlab-debian zatonovo fractalrock Generate fractal time series with non-normal returns distribution zatonovo futile.logger A logging package in R similar to log4j zatonovo futile.matrix Tools for studying random matrices zatonovo futile.options An options management framework for R packages zatonovo kingsmen zatonovo lambda.r Functional programming in R zatonovo lambda.tools Data manipulation tools based on lambda.r zatonovo odessa zatonovo tawny Covariance estimation and portfolio optimization using random matrix theory and shrinkage techniques zatonovo tawny.types Common types for tawny zauster RComtrade Download Comtrade data zauster npExact An R Package for nonparametric (or distribution-free) hypothesis tests. zauster ormisc Personal R Package zauster riot A Package for functions related to input-output tables (IOTs) zauster wiodv2 Function to download the new WIOD zbeaver4 beavR Re-usable R Functions from Past Projects zbwrnz parkcluster A refactored version of the clustering algorithm created by Park et al. zcesur ager zcesur williams-faculty-age zcolburn Bioi An R package containing a collection of cell biology image processing tools zcolburn courseraPackage zcolburn evolution zdealveindy conford Adds confidence intervals for supplementary env variables projected onto diagram of unconstrained ordination zdealveindy genspe Calculates co-occurrence based species habitat specialization. zdealveindy ordijuice zdealveindy theta Calculates theta co-occurence based index of species specialization zdealveindy twinspanR TWINSPAN in R zdealveindy weimea zdk123 BatchStARS R package for Stability Approach to Regularization Selection for lasso problems, in batch computing environments. zdk123 SpiecEasi Sparse InversE Covariance estimation for Ecological Association and Statistical Inference zdk123 codmeR COmpositional Data analysis for Microbial Ecology in R (placeholder name until we think of something better) zdk123 compPLS An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data zdk123 pulsar pulsar: Parallel Utilities for Lambda Selection along a Regularization Path zedoul ZDBayes Forked from CausalImpact to set prior values, which is not supported in the original package. zedoul anomaly (Under development) cbar: Contextual Bayesian Anomaly Detection in R zedoul bandits (develop) Bayesian Bandits zedoul buildEssential buildEssential: An R package for dependency management based on devtools, and miniCRAN zedoul cbar cbar: Contextual Bayesian Anomaly Detection in R zedoul coder under dev zedoul devstory 데브스토리는 1981년 1월 1일부터 현재까지의 한국을 배경으로 프로그래머를 주인공으로 하는 로그라이크입니다. (아직 개발중) zedoul drefiner Refining data table using a set of formulas zedoul honokr Time-series Data Analysis in R zedoul refnr Refining data table using a set of formulas zedoul tropr A tool for TV Tropes, aimed particularly at the page summary. zedtaha ivprobit-1.0 ivprobit fit an Instrumental variables probit model using the generalized least squares estimator zedyang tsLib R package for financial econometrics (FI302) at SJTU. zeee1 Tashu_Rpackage zeehio condformat R package to apply conditional formatting rules to a data.frame zeehio ggpipe ggplot with the pipe zeehio mendeleyr R Package that interfaces with Mendeley's API. Not official, not complete, not very supported (limited time). Patches welcome. zeehio msProcess R package for "Protein Mass Spectra Processing" developped by Lixin Gong, William Constantine, and Yu Alex Chen. zeemkr ncpen zejin MDMICA R Package MDMICA zejin MDMeasure R Package MDMeasure zeldow bztools zeldow semibart R package for Bayesian semiparametric regression and structural mean models zellerino BOAT---biological-ontology-analysis-tool Tool for exploratory data analysis of enrichment/depletion of ontological categories in gene sets of interest zengfengbo WuR zengfengbo bbcna copy number analysis for ngs data zengfengbo cnfont R画图添加中文支持 zengfengbo oligo primer3 R interface zerogravitylabs razdatalake zgzhao Xtools zhamel foo Make Factors Less Annoying zhangh12 ARTP2 An enhanced R package of biological pathway analysis and pathway meta-analysis for genome-wide association studies zhangh12 ARTP3 An enhanced R package of biological pathway analysis for genome-wide association studies zhangh12 MAPS Multi-locus Association test for a dichotomous Primary trait and its quantitative Secondary phenotype zhangh12 MRCC Mendelian Randomization for Case-Control Study zhanghfd CCGA CCGA: Case-control genetic association analysis incorporating non-confounding covariates zhanghfd PLNseq PLNseq: A multivariate Poisson lognormal distribution for high-throughput correlated RNA-sequencing read count data zhangjunpeng411 miRsponge miRsponge: identification and analysis of miRNA sponge interaction networks and modules zhangkd5 riskCalc Risk Calculation System -- MATH G4082 Project zhanglabNKU DASC Detecting hidden batch factors through data adaptive adjustment for biological effects The DASC project is funded by Nankai University and Baylor College of Medicine. The algorithm is designed by Haidong Yi, Han Zhang, Zhandong Liu, and Ayush Raman. The package is coded by Haidong Yi. Ayush Raman writes the vignettes and uploads the package to bioconductor at bioconductor.org/packages/DASC. zhangns07 r-mbest-multilevel zhangwen1987 MyCopyWriteR correct the x11 output BUG zhangwendy GGSEA zhangxing-love QingStorRSDK_0.1 zhangxing-love qingstor-sdk-r zhangxing-love qingstor.signature zhangyuwinnie RPEXE.RPEXT zhaoc1 subfunc zhaoni153 GHT zhaoshi169 gamm4.test zhaoxue-xmu RDA Datasets, functions and examples from the book: R Data Analysis-Methods and Application (in chinese) by Kuangnan Fang et al. zhaoy zhaoy customized functions zhejosephliu blossomTree R package zhejosephliu gES R package zhejosephliu scalefreeForest R package zhengdeals ModelTest zhengdong91 Test2 What the Package Does (one line, title case) zhengdong91 hw8 For STAT547 HW8 zhengdong91 test What the Package Does (one line, title case) zhengle-advantaseeds advantaSeedsCS zhengle-advantaseeds test_shiny zhengxwen HIBAG R package -- HLA Genotype Imputation with Attribute Bagging (development, unstable version) zhengxwen SNPRelate R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version). zhengxwen SeqArray Big Data Management of Whole-Genome Sequence Variant Calls (Development Version) zhengxwen gdsfmt R Interface to CoreArray Genomic Data Structure (GDS) Files (Development Version). zhenin sojo Selection Operator for JOintly analyzing multiple variants (SOJO) zhenkewu baker Bayesian Analysis Kit for Etiology Research zhenkewu mpcr R package for estimating treatment effects in matched-pair cluster randomized trials (MPCR) using covariate calibration zhenkewu nplcm R package for fitting nested partially latent class models (nplcm) zhenkewu spotgear Subset Profiling and Organizing Tools for Gel Electrophoresis Autoradiography in R zhezhangsh Agri The analysis of genomic regions of interest zhezhangsh AwsomicsMining Implementation of methods related to data mining, machine learning, etc. zhezhangsh CHOPseq ChIP-seq related functions and procedures zhezhangsh DEGandMore Analyses related to differential gene expression and functional annotation zhezhangsh GtUtility R utility functions that handle genotyping data zhezhangsh Rnaseq Some R functions used for tasks related to RNA-seq data zhezhangsh RoCAR zhezhangsh awsomics AWSOMICS applications zhezhangsh awsomicsR The R package of awsomics zhezhangsh rchive An comprehensive archive of genomic data structured and stored as R data objects zhifeiyan WeibullHM An R package for fitting a hierarchical Bayesian Weibull hidden Markov model via a forward filtering backward sampling MCMC algorithm zhifeiyan bfcluster An R package for both network community detection and multivariate data clustering zhihaozheng rmushroom zhijinwu SC2P zhilongjia DNMF Discriminant Nonnegative Matrix Factorization zhilongjia GeneExpressionSignature Gene Expression Signature based Similarity Metric (GSEA, PGSEA, ScoreX) zhilongjia PAGE Parametric Analysis of Gene Set Enrichment zhilongjia RRHO RRHO: Inference on agreement between ordered lists zhilongjia cogena co-expressed gene-set enrichment analysis zhilongjia motiflogo A new representation of motif logo zhilongjia scorePage scorePage zhitkovk themehumble Minimalistic theme for ggplot2 zhixingfeng rGDA zhiyuanhu masonmd zhkzhang SmoothCure zhoulijia SCORE Spectral Clustering On Ratio of Eigenvectors (SCORE) zhouyan ggtikz Plotting utilities using ggplot2 and tikzDevice zhouzilu iCNV Integrated copy number variation detection toolset zhuangyanbuaa bp-datapipeline zhuangyanbuaa cranlog zhujack GEOmetadb zhujack SRAdb zhukovyuri xSub R package with tools to download and merge data files from www.x-sub.org. zhuozhang Rerr zhushijia GIGSEA Genotype Imputed Gene Set Enrichment Analysis using GWAS Summary Level Data zhushijia MatrixEpistasis An ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment zhushijia SMRTER Single Molecule Real Time sequencing Epigenetic Refinement zhuzhi PairsTrading ziddec geodesign R package for geostatistical sampling design zief0002 QME Quantitative Methods in Education R package zief0002 epsy1261 zieglema ClinicalSig Functions for clinical significance zielinskipp batman zijinw mmcc mmcc package ziqiangc AutoAntigen A R package for analysis GenePix data ziqiangc Elbo My first R package ziqiangc Knees Only for test ziqiangc TopK An R package for TopK exact test ziqiangc shiny-server ziyanyin DEEE An implementation of Differentially Expressed genes analysis and Equivalently Expressed genes analysis. zj2213 NYTimesArticleStock zjdaye AFNC Adaptive False Negative Control (AFNC) zji90 GEOsearch zji90 GSCA GSCA: Gene Set Context Analysis zji90 GSCAshinyapp zji90 RMRCE zji90 SCRAT zji90 SEPA zji90 TSCAN TSCAN: Tools for Single-Cell ANalysis zji90 statisticstoolbox zjosha MyPackage zkabat earthquakeVis R package for NOAA earthquake visualization zkamvar InspirationDisseminationSchedule Code to create the schedule and dossiers for Inspiration Dissemination zkamvar blotmat No description or website provided. zkamvar blotr zkamvar citest A test for R's citation function zkamvar diaper a lightweight method of creating R package dependencies for a project OR "baby steps to reproducibility" zkamvar ggcompoplot Plot Posterior Assignment Values From a 'DAPC' Analysis zkamvar inheritest Test of method inheritance zkamvar popprxl A small package that allows import of GenAlEx data directly into poppr from excel zkeller89 plots250 Probability Visualziing for Stats 250 zlfccnu econophysics zliu392 Package627 Package for Stat627 zliu392 RMemoir zmar WarsawTransport zmbc soql R package that helps construct queries for the Socrata Open Data API zmjones edarf exploratory data analysis using random forests zmjones fanova functional ANOVA decomposition of prediction functions zmjones mmpf Monte-Carlo methods for prediction functions zmjones srf asymptotically normal subbagging random forests described in Mentch and Hooker (2015) in JMLR zmjones zmjones misc functions package zmpldistribution zmpl zmzhang airPLS_R R version of airPLS zmzhang baselineWavelet Intelligent background-correction algorithm for highly fluorescent sample in Raman spectroscopy znmeb masteringdfsanalytics Tools for collecting, managing and analyzing daily fantasy sports data znmeb mlbdfs R package for managing Major League Baseball daily fantasy sports data znmeb tidysportsfeed A wrapper for tidy data from the MySportsFeed API znmeb tidysportsfeeds Tidy Data Acquistion from Sports Data APIs zoevanhavre ZDev No description or website provided. zoevanhavre Zmix R package for overfitting Bayesian mixture models with an unknown number of components. zoevanhavre ZmixHMM Overfitted Gaussian Hidden Markov models (In progress) zoevanhavre Zmix_devVersion2 code development - not for general use (use Zmix instead) zoltankovacs EThu R-project program package for electronic tongue data evaluations zooaRchGUI zooaRchGUI zoonproject modules modules for each component of an SDM workflow, for use with the zoon R package zoonproject website zoonproject zoon The zoon R package zouyuxin mashcontrastr zozlak Bum zozlak MLAK zozlak MLAKdane zozlak PWEdane zozlak RODBCext zozlak Reurrep zozlak WicPomiarSatelitarny zozlak ZPD zozlak ZPDzapis zozlak sentinel2R zozlak styloWorkshop zozlak useR2015 zqzneptune RNAexpresso zqzneptune cfrac A R package for deciphering protein-protein interactions (PPIs) and protein complexes from biomedical fractionation profiles. zrmacc BinaryModels EM implementation of probit regression zrmacc BinaryScoreTests Score Test for Binary Outcome Models zrmacc DCS Differential Contact Score zrmacc LFDR Local false discovery rate zrmacc RNOmni Rank Normal Omnibus Association Test zross sensorDataImport zrussek eatestpackage zrxing smash Contains the SMASH package, which performs Gaussian and Poisson denoising zrxing test_repo zshao1 ERSSA Empirical RNA-seq Sample Size Analysis zsmith27 BAP zsmith27 BIBI zsmith27 Benthos zsmith27 mmir zsteinmetz envalysis Miscellaneous R functions for environmental analyses zsteinmetz wofostats Functions to handle WOFOST parameter input files and model results using R zumbov2 findR Find R Scripts, R Markdown, PDF and text files by content with pattern matching zwang8889 hello-world Just a demo zwang8889 project4800 zwdzwd GR.InfiniumMethylation annotation files for Infinium Methylation BeadChip zwdzwd biqr bisulfite sequence analysis zwdzwd wheatmap complex layout of heatmaps made simple zwdzwd wzard my R utility functions zxkathy powers zzawadz BondProc R package for bonds zzawadz CHARME zzawadz DLDistance zzawadz DemoProc zzawadz DepthProc zzawadz ProjectFinder zzawadz R6cpp zzawadz TestRJava zzawadz bayesLM Simple Bayesian Regression zzawadz cdmQMatrix Estimating the Q-Matrix for Cognitive Diagnosis Models zzawadz customLayout Simple extension of basic layout function from R. zzawadz dbBook zzawadz depthDensity zzawadz dragulaR zzawadz factorMerger zzawadz fileCacheR Some utils functions for working with files in R zzawadz iCacheR Utils for caching zzawadz mirtExplorer Some tools to explore mirt package. zzawadz nbpInterestRatesR Simple package for downloading interest rates from National Bank of Poland zzawadz rawk AWK in R! zzawadz shinyProc zzawadz zUtilsFunc Some utility functions for R