{ "metadata": { "name": "", "signature": "sha256:00ffbca32a8e2895035d6b2dcc6cb27310d29bd7905d11228afb2c95e0b87486" }, "nbformat": 3, "nbformat_minor": 0, "worksheets": [ { "cells": [ { "cell_type": "heading", "level": 1, "metadata": {}, "source": [ "TITLE" ] }, { "cell_type": "heading", "level": 3, "metadata": {}, "source": [ "Objective" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "::**DESCRIPTION OF OBJECTIVE**::" ] }, { "cell_type": "heading", "level": 3, "metadata": {}, "source": [ "Environment Setup" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Configure notebook style (see NBCONFIG.ipynb), add imports and paths. The **%run** magic used below **requires IPython 2.0 or higher.**" ] }, { "cell_type": "code", "collapsed": false, "input": [ "%run NBCONFIG.ipynb" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "Populating the interactive namespace from numpy and matplotlib\n" ] }, { "output_type": "stream", "stream": "stderr", "text": [ "WARNING: pylab import has clobbered these variables: ['plotting']\n", "`%matplotlib` prevents importing * from pylab and numpy\n" ] }, { "html": [ "" ], "metadata": {}, "output_type": "display_data", "text": [ "" ] } ], "prompt_number": 1 }, { "cell_type": "heading", "level": 4, "metadata": {}, "source": [ "Step 1: ::Description Step 1::" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Explanation of step 1" ] }, { "cell_type": "code", "collapsed": false, "input": [], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 1 }, { "cell_type": "code", "collapsed": false, "input": [], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 1 }, { "cell_type": "markdown", "metadata": {}, "source": [ "
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This notebook is free for redistribution. If citing, please reference as:

\n", "- *Hughes, A. (2012). [A Computational Framework for Plasmonic Nanobiosensing](https://www.researchgate.net/publication/236672995_A_Computational_Framework_for_Plasmonic_Nanobiosensing). Python in Science Conference [SCIPY].* \n", "\n", "\n", "

Questions or Feedback?

\n", "\n", "* hugadams@gwmail.gwu.edu \n", "* twitter:
@hughesadam87\n", "* Mark Reeves Biophysics Group\n", "\n", "\n", "\n", "\n", "

References:

\n", "\n", "* [1] : **REF 1**\n", "* [2] : **REF 2**\n", "\n", "\n", "\n", "\n", "\n", "

Related:

\n", "\n", " * pyuvvis: Exploratory Spectral Data Analysis\n", " * pyparty: Image Analysis of Particles\n", " * Lorena A. Barba (GWU Engineering)\n", "\n", "\n", "\n", "\n", "\n", "

Notebook styling ideas:

\n", "\n", "* Louic's web blog\n", "* Plotly\n", "* Publication-ready the first time: Beautiful, reproducible plots with Matplotlib\n", "\n", "
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