#!/usr/bin/python # -*- coding: utf-8 -*- """ ===================== Classifier comparison ===================== A comparison of a several classifiers in scikit-learn on synthetic datasets. The point of this example is to illustrate the nature of decision boundaries of different classifiers. This should be taken with a grain of salt, as the intuition conveyed by these examples does not necessarily carry over to real datasets. Particularly in high-dimensional spaces, data can more easily be separated linearly and the simplicity of classifiers such as naive Bayes and linear SVMs might lead to better generalization than is achieved by other classifiers. The plots show training points in solid colors and testing points semi-transparent. The lower right shows the classification accuracy on the test set. """ print(__doc__) # Code source: Gael Varoqueux # Andreas Mueller # Modified for Documentation merge by Jaques Grobler # License: BSD 3 clause import numpy as np import pylab as pl from matplotlib.colors import ListedColormap from sklearn.cross_validation import train_test_split from sklearn.preprocessing import StandardScaler from sklearn.datasets import make_moons, make_circles, make_classification from sklearn.neighbors import KNeighborsClassifier from sklearn.svm import SVC from sklearn.tree import DecisionTreeClassifier from sklearn.ensemble import RandomForestClassifier, AdaBoostClassifier from sklearn.naive_bayes import GaussianNB from sklearn.lda import LDA from sklearn.qda import QDA h = .02 # step size in the mesh names = ["Nearest Neighbors", "Linear SVM", "RBF SVM", "Decision Tree", "Random Forest", "AdaBoost", "Naive Bayes", "LDA", "QDA"] classifiers = [ KNeighborsClassifier(3), SVC(kernel="linear", C=0.025), SVC(gamma=2, C=1), DecisionTreeClassifier(max_depth=5), RandomForestClassifier(max_depth=5, n_estimators=10, max_features=1), AdaBoostClassifier(), GaussianNB(), LDA(), QDA()] X, y = make_classification(n_features=2, n_redundant=0, n_informative=2, random_state=1, n_clusters_per_class=1) rng = np.random.RandomState(2) X += 2 * rng.uniform(size=X.shape) linearly_separable = (X, y) datasets = [make_moons(noise=0.3, random_state=0), make_circles(noise=0.2, factor=0.5, random_state=1), linearly_separable ] figure = pl.figure(figsize=(27, 9)) i = 1 # iterate over datasets for ds in datasets: # preprocess dataset, split into training and test part X, y = ds X = StandardScaler().fit_transform(X) X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=.4) x_min, x_max = X[:, 0].min() - .5, X[:, 0].max() + .5 y_min, y_max = X[:, 1].min() - .5, X[:, 1].max() + .5 xx, yy = np.meshgrid(np.arange(x_min, x_max, h), np.arange(y_min, y_max, h)) # just plot the dataset first cm = pl.cm.RdBu cm_bright = ListedColormap(['#FF0000', '#0000FF']) ax = pl.subplot(len(datasets), len(classifiers) + 1, i) # Plot the training points ax.scatter(X_train[:, 0], X_train[:, 1], c=y_train, cmap=cm_bright) # and testing points ax.scatter(X_test[:, 0], X_test[:, 1], c=y_test, cmap=cm_bright, alpha=0.6) ax.set_xlim(xx.min(), xx.max()) ax.set_ylim(yy.min(), yy.max()) ax.set_xticks(()) ax.set_yticks(()) i += 1 # iterate over classifiers for name, clf in zip(names, classifiers): ax = pl.subplot(len(datasets), len(classifiers) + 1, i) clf.fit(X_train, y_train) score = clf.score(X_test, y_test) # Plot the decision boundary. For that, we will assign a color to each # point in the mesh [x_min, m_max]x[y_min, y_max]. if hasattr(clf, "decision_function"): Z = clf.decision_function(np.c_[xx.ravel(), yy.ravel()]) else: Z = clf.predict_proba(np.c_[xx.ravel(), yy.ravel()])[:, 1] # Put the result into a color plot Z = Z.reshape(xx.shape) ax.contourf(xx, yy, Z, cmap=cm, alpha=.8) # Plot also the training points ax.scatter(X_train[:, 0], X_train[:, 1], c=y_train, cmap=cm_bright) # and testing points ax.scatter(X_test[:, 0], X_test[:, 1], c=y_test, cmap=cm_bright, alpha=0.6) ax.set_xlim(xx.min(), xx.max()) ax.set_ylim(yy.min(), yy.max()) ax.set_xticks(()) ax.set_yticks(()) ax.set_title(name) ax.text(xx.max() - .3, yy.min() + .3, ('%.2f' % score).lstrip('0'), size=15, horizontalalignment='right') i += 1 figure.subplots_adjust(left=.02, right=.98) pl.show()