/* * #%L * ImgLib2: a general-purpose, multidimensional image processing library. * %% * Copyright (C) 2009 - 2016 Tobias Pietzsch, Stephan Preibisch, Stephan Saalfeld, * John Bogovic, Albert Cardona, Barry DeZonia, Christian Dietz, Jan Funke, * Aivar Grislis, Jonathan Hale, Grant Harris, Stefan Helfrich, Mark Hiner, * Martin Horn, Steffen Jaensch, Lee Kamentsky, Larry Lindsey, Melissa Linkert, * Mark Longair, Brian Northan, Nick Perry, Curtis Rueden, Johannes Schindelin, * Jean-Yves Tinevez and Michael Zinsmaier. * %% * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * 1. Redistributions of source code must retain the above copyright notice, * this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright notice, * this list of conditions and the following disclaimer in the documentation * and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE * POSSIBILITY OF SUCH DAMAGE. * #L% */ import ij.ImageJ; import io.scif.img.IO; import io.scif.img.ImgIOException; import net.imglib2.FinalInterval; import net.imglib2.RandomAccessible; import net.imglib2.img.Img; import net.imglib2.img.display.imagej.ImageJFunctions; import net.imglib2.outofbounds.OutOfBoundsConstantValueFactory; import net.imglib2.type.numeric.real.FloatType; import net.imglib2.view.ExtendedRandomAccessibleInterval; import net.imglib2.view.Views; /** * Illustrate outside strategies * */ public class Example5 { public Example5() throws ImgIOException { // open with SCIFIO as a FloatType Img< FloatType > image = IO.openImgs( "DrosophilaWingSmall.tif", new FloatType() ).get( 0 ); // create an infinite view where all values outside of the Interval are 0 RandomAccessible< FloatType> infinite1 = Views.extendValue( image, new FloatType( 0 ) ); // create an infinite view where all values outside of the Interval are 128 RandomAccessible< FloatType> infinite2 = Views.extendValue( image, new FloatType( 128 ) ); // create an infinite view where all outside values are random in a range of 0-255 RandomAccessible< FloatType> infinite3 = Views.extendRandom( image, 0, 255 ); // create an infinite view where all values outside of the Interval are // the mirrored content, the mirror is the last pixel RandomAccessible< FloatType> infinite4 = Views.extendMirrorSingle( image ); // create an infinite view where all values outside of the Interval are // the mirrored content, the mirror is BEHIND the last pixel, // i.e. the first and last pixel are always duplicated RandomAccessible< FloatType> infinite5 = Views.extendMirrorDouble( image ); // all values outside of the Interval periodically repeat the image content // (like the Fourier space assumes) RandomAccessible< FloatType> infinite6 = Views.extendPeriodic( image ); // if you implemented your own strategy that you want to instantiate, it will look like this RandomAccessible< FloatType> infinite7 = new ExtendedRandomAccessibleInterval<>( image, new OutOfBoundsConstantValueFactory<>( new FloatType( 255 ) ) ); // visualize the outofbounds strategies // in order to visualize them, we have to define a new interval // on them which can be displayed long[] min = new long[ image.numDimensions() ]; long[] max = new long[ image.numDimensions() ]; for ( int d = 0; d < image.numDimensions(); ++d ) { // we add/subtract another 30 pixels here to illustrate // that it is really infinite and does not only work once min[ d ] = -image.dimension( d ) - 90 ; max[ d ] = image.dimension( d ) * 2 - 1 + 90; } // define the Interval on the infinite random accessibles FinalInterval interval = new FinalInterval( min, max ); // now define the interval on the infinite view and display ImageJFunctions.show( Views.interval( infinite1, interval ) ); ImageJFunctions.show( Views.interval( infinite2, interval ) ); ImageJFunctions.show( Views.interval( infinite3, interval ) ); ImageJFunctions.show( Views.interval( infinite4, interval ) ); ImageJFunctions.show( Views.interval( infinite5, interval ) ); ImageJFunctions.show( Views.interval( infinite6, interval ) ); ImageJFunctions.show( Views.interval( infinite7, interval ) ); } public static void main( String[] args ) throws ImgIOException { // open an ImageJ window new ImageJ(); // run the example new Example5(); } }