ShareLoc
type: Ontology
description: ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.

modality
type: Class

cell line
type: Class

fluorophore
type: Class

labeling strategy
type: Class

structure
type: Class

target molecule
type: Class

dimension
type: Class

reconstruction software
type: Class

fixation
type: Class

buffer
type: Class

palm
type: Class
subclass of: modality

storm
type: Class
subclass of: modality

dstorm
type: Class
subclass of: modality

dna-paint
type: Class
subclass of: modality

paint
type: Class
subclass of: modality

u2os
type: Class
subclass of: cell line

u373
type: Class
subclass of: cell line

cos7
type: Class
subclass of: cell line

ref52
type: Class
subclass of: cell line

mdck
type: Class
subclass of: cell line

hela
type: Class
subclass of: cell line

nih3t3
type: Class
subclass of: cell line

yeast
type: Class
subclass of: cell line

e-coli
type: Class
subclass of: cell line

alexa-647
type: Class
subclass of: fluorophore

alexa-555
type: Class
subclass of: fluorophore

alexa-532
type: Class
subclass of: fluorophore

cy5
type: Class
subclass of: fluorophore

cy3b
type: Class
subclass of: fluorophore

cf680
type: Class
subclass of: fluorophore

cf660
type: Class
subclass of: fluorophore

cf568
type: Class
subclass of: fluorophore

hmsir
type: Class
subclass of: fluorophore

atto-488
type: Class
subclass of: fluorophore

mos2
type: Class
subclass of: fluorophore

mapple
type: Class
subclass of: fluorophore

dendra2
type: Class
subclass of: fluorophore

pa-gfp
type: Class
subclass of: fluorophore

pa-cherry
type: Class
subclass of: fluorophore

dronpa
type: Class
subclass of: fluorophore

phalloidin-647
type: Class
subclass of: fluorophore

nile-red
type: Class
subclass of: fluorophore

jf-646
type: Class
subclass of: fluorophore

jf-568
type: Class
subclass of: fluorophore

pa-jf646
type: Class
subclass of: fluorophore

Pa-jf568
type: Class
subclass of: fluorophore

transient-transfection
type: Class
subclass of: labeling strategy

stable-knock-in
type: Class
subclass of: labeling strategy

endogenous-labeling-crispr
type: Class
subclass of: labeling strategy

direct-immuno-labeling
type: Class
subclass of: labeling strategy

indirect-immuno-labeling
type: Class
subclass of: labeling strategy

halo-tag
type: Class
subclass of: labeling strategy

snap-tag
type: Class
subclass of: labeling strategy

tetracysteine-tag
type: Class
subclass of: labeling strategy

actin
type: Class
subclass of: structure

microtubule
type: Class
subclass of: structure

mitochondria
type: Class
subclass of: structure

Nuclear-pore
type: Class
subclass of: structure

clathrin
type: Class
subclass of: structure

vimentin
type: Class
subclass of: structure

plasma membrane
type: Class
subclass of: structure

intermediate filament
type: Class
subclass of: structure

dna
type: Class
subclass of: structure

nup133
type: Class
subclass of: structure

nup96
type: Class
subclass of: target molecule

tom22
type: Class
subclass of: target molecule

alpha-tubulin
type: Class
subclass of: target molecule

beta-tubulin
type: Class
subclass of: target molecule

actin
type: Class
subclass of: target molecule

vimentin
type: Class
subclass of: target molecule

wga
type: Class
subclass of: target molecule

escrt
type: Class
subclass of: target molecule

ftsz
type: Class
subclass of: target molecule

h1
type: Class
subclass of: target molecule

h2
type: Class
subclass of: target molecule

h3
type: Class
subclass of: target molecule

polye
type: Class
subclass of: target molecule

2d
type: Class
subclass of: dimension

3d
type: Class
subclass of: dimension

thunderstorm
type: Class
subclass of: reconstruction software

smap
type: Class
subclass of: reconstruction software

smoiphot
type: Class
subclass of: reconstruction software

zola-3d
type: Class
subclass of: reconstruction software

picasso
type: Class
subclass of: reconstruction software

quickpalm
type: Class
subclass of: reconstruction software

4% pfa
type: Class
subclass of: fixation

1% pfa
type: Class
subclass of: fixation

pfa+gluta
type: Class
subclass of: fixation

glyoxal
type: Class
subclass of: fixation

methanol
type: Class
subclass of: fixation

gluox
type: Class
subclass of: buffer

catalase
type: Class
subclass of: buffer

mea
type: Class
subclass of: buffer

abbelight-safe-reagent
type: Class
subclass of: buffer

Idylle-everspark
type: Class
subclass of: buffer