Prefix(:=) Prefix(dc:=) Prefix(obo:=) Prefix(owl:=) Prefix(rdf:=) Prefix(xml:=) Prefix(xsd:=) Prefix(foaf:=) Prefix(rdfs:=) Prefix(swrl:=) Prefix(chebi:=) Prefix(swrlb:=) Prefix(terms:=) Prefix(protege:=) Prefix(oboInOwl:=) Prefix(ncbitaxon:=) Ontology( Annotation(protege:defaultLanguage "en") Annotation(dc:contributor "Achchuthan Shanmugasundram") Annotation(dc:contributor "Jie Zheng") Annotation(dc:contributor "Kitsos Louis") Annotation(dc:contributor "Omar harb") Annotation(dc:contributor "Satya Sahoo") Annotation(dc:creator "Alan Ruttenberg") Annotation(dc:creator "Albert Goldfain") Annotation(dc:creator "Alexander Diehl") Annotation(dc:creator "Anna Protasio") Annotation(dc:creator "Anthony Huffman") Annotation(dc:creator "Barry Smith") Annotation(dc:creator "Bjoern Peters") Annotation(dc:creator "Chris J. Janse") Annotation(dc:creator "Chris Stoeckert") Annotation(dc:creator "Flora Logan") Annotation(dc:creator "Jie Zheng") Annotation(dc:creator "Lindsay Cowell") Annotation(dc:creator "Priti Parikh") Annotation(dc:creator "Shahid M. Khan") Annotation(dc:date "2010-08-04"^^xsd:date) Annotation(dc:date "2017-11-03T15:13:52"^^xsd:dateTime) Annotation(dc:description "The Parasite Infectirious Disease Ontology is an extenson of the Infectious Disease Ontology (IDO) and the Ontology for Parasite Lifecycle (OPL) that combines information about parasite infectirous diseases. PIDO is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.") Annotation(dc:license ) Annotation(dc:title "Ontology for Parasite Lifecycle") Annotation(terms:license ) Annotation(rdfs:comment "The Parasite Life Cycle ontology was developed as part of the NIH-funded \"Semantics and Services enabled Problem Solving Environment for Tcruzi\" project (Grant#1R01HL087795-01A1). The Kno.e.sis center, Computer Science and Engineering Department, Wright State University, Center for Bioinformatics, Department of Genetics, University of Pennsylvania School of Medicine, USA and the Tarleton Lab, Center for Tropical and Emerging Global Diseases (CTEGD), University of Georgia, USA collaborated to create this ontology. Resource page: http://knoesis.wright.edu/trykipedia") Annotation(rdfs:comment "The core Infectious Disease Ontology is an ontology of entities generally relevant to both the biomedical and clinical aspects of infectious diseases, including terms such as 'pathogen', 'host', 'vector', and 'vaccine'. The structure of IDO adheres to the Basic Formal Ontology. Terms in IDO that are within the scope of other OBO Foundry ontologies, such as the Gene Ontology, are derived from those ontologies. Other terms are defined as cross-products of terms from Foundry ontologies to the extent possible. For more information, see http://www.infectiousdiseaseontology.org/Home.html. "@en) Annotation(rdfs:seeAlso "http://www.infectiousdiseaseontology.org") Annotation(owl:versionInfo "2017-11-03") Annotation(owl:versionInfo "2023-08-28") Declaration(Class(obo:BFO_0000001)) Declaration(Class(obo:BFO_0000002)) Declaration(Class(obo:BFO_0000003)) Declaration(Class(obo:BFO_0000004)) Declaration(Class(obo:BFO_0000005)) Declaration(Class(obo:BFO_0000006)) Declaration(Class(obo:BFO_0000008)) Declaration(Class(obo:BFO_0000009)) Declaration(Class(obo:BFO_0000011)) Declaration(Class(obo:BFO_0000015)) Declaration(Class(obo:BFO_0000016)) Declaration(Class(obo:BFO_0000017)) Declaration(Class(obo:BFO_0000018)) Declaration(Class(obo:BFO_0000019)) Declaration(Class(obo:BFO_0000020)) Declaration(Class(obo:BFO_0000023)) Declaration(Class(obo:BFO_0000024)) Declaration(Class(obo:BFO_0000026)) Declaration(Class(obo:BFO_0000027)) Declaration(Class(obo:BFO_0000028)) Declaration(Class(obo:BFO_0000029)) Declaration(Class(obo:BFO_0000030)) Declaration(Class(obo:BFO_0000031)) Declaration(Class(obo:BFO_0000034)) Declaration(Class(obo:BFO_0000035)) Declaration(Class(obo:BFO_0000038)) Declaration(Class(obo:BFO_0000040)) Declaration(Class(obo:BFO_0000140)) Declaration(Class(obo:BFO_0000141)) Declaration(Class(obo:BFO_0000142)) Declaration(Class(obo:BFO_0000144)) Declaration(Class(obo:BFO_0000145)) Declaration(Class(obo:BFO_0000146)) Declaration(Class(obo:BFO_0000147)) Declaration(Class(obo:BFO_0000148)) Declaration(Class(obo:BFO_0000182)) Declaration(Class(obo:BTO_0000597)) Declaration(Class(obo:BTO_0001117)) Declaration(Class(obo:CARO_0000000)) Declaration(Class(obo:CHEBI_23367)) Declaration(Class(obo:CHEBI_23888)) Declaration(Class(obo:CHEBI_3638)) Declaration(Class(obo:CL_0000000)) Declaration(Class(obo:CL_0000182)) Declaration(Class(obo:CL_0000232)) Declaration(Class(obo:CL_0000235)) Declaration(Class(obo:CL_0000738)) Declaration(Class(obo:DOID_0050117)) Declaration(Class(obo:DOID_1398)) Declaration(Class(obo:DOID_4)) Declaration(Class(obo:GO_0000003)) Declaration(Class(obo:GO_0002250)) Declaration(Class(obo:GO_0002443)) Declaration(Class(obo:GO_0006955)) Declaration(Class(obo:GO_0006959)) Declaration(Class(obo:GO_0008150)) Declaration(Class(obo:GO_0019814)) Declaration(Class(obo:GO_0019815)) Declaration(Class(obo:GO_0032502)) Declaration(Class(obo:GO_0032991)) Declaration(Class(obo:GO_0040007)) Declaration(Class(obo:GO_0042101)) Declaration(Class(obo:GO_0043093)) Declaration(Class(obo:GO_0044403)) Declaration(Class(obo:GO_0044406)) Declaration(Class(obo:GO_0044409)) Declaration(Class(obo:GO_0044411)) Declaration(Class(obo:GO_0045087)) Declaration(Class(obo:GO_0048525)) Declaration(Class(obo:GO_0050777)) Declaration(Class(obo:GO_0051093)) Declaration(Class(obo:GO_0051234)) Declaration(Class(obo:GO_0051301)) Declaration(Class(obo:GO_0051704)) Declaration(Class(obo:GO_0065007)) Declaration(Class(obo:GO_0085030)) Declaration(Class(obo:GO_0085031)) Declaration(Class(obo:IAO_0000027)) Declaration(Class(obo:IAO_0000030)) Declaration(Class(obo:IAO_0000078)) Declaration(Class(obo:IAO_0000102)) Declaration(Class(obo:IAO_0000225)) Declaration(Class(obo:IAO_0000409)) Declaration(Class(obo:IAO_8000000)) Declaration(Class(obo:IAO_8000001)) Declaration(Class(obo:IAO_8000002)) Declaration(Class(obo:IAO_8000003)) Declaration(Class(obo:IAO_8000004)) Declaration(Class(obo:IAO_8000005)) Declaration(Class(obo:IAO_8000006)) Declaration(Class(obo:IAO_8000007)) Declaration(Class(obo:IAO_8000008)) Declaration(Class(obo:IAO_8000009)) Declaration(Class(obo:IAO_8000010)) Declaration(Class(obo:IAO_8000011)) Declaration(Class(obo:IAO_8000012)) Declaration(Class(obo:IAO_8000013)) Declaration(Class(obo:IAO_8000014)) Declaration(Class(obo:IAO_8000015)) Declaration(Class(obo:IAO_8000016)) Declaration(Class(obo:IAO_8000017)) Declaration(Class(obo:IAO_8000018)) Declaration(Class(obo:IAO_8000019)) Declaration(Class(obo:IAO_8000020)) Declaration(Class(obo:IDO_0000000)) Declaration(Class(obo:IDO_0000001)) Declaration(Class(obo:IDO_0000002)) Declaration(Class(obo:IDO_0000003)) Declaration(Class(obo:IDO_0000004)) Declaration(Class(obo:IDO_0000005)) Declaration(Class(obo:IDO_0000006)) Declaration(Class(obo:IDO_0000007)) Declaration(Class(obo:IDO_0000008)) Declaration(Class(obo:IDO_0000009)) Declaration(Class(obo:IDO_0000010)) Declaration(Class(obo:IDO_0000011)) Declaration(Class(obo:IDO_0000012)) Declaration(Class(obo:IDO_0000013)) Declaration(Class(obo:IDO_0000015)) Declaration(Class(obo:IDO_0000016)) Declaration(Class(obo:IDO_0000017)) Declaration(Class(obo:IDO_0000018)) Declaration(Class(obo:IDO_0000019)) Declaration(Class(obo:IDO_0000020)) Declaration(Class(obo:IDO_0000021)) Declaration(Class(obo:IDO_0000022)) Declaration(Class(obo:IDO_0000023)) Declaration(Class(obo:IDO_0000024)) Declaration(Class(obo:IDO_0000025)) Declaration(Class(obo:IDO_0000026)) Declaration(Class(obo:IDO_0000027)) Declaration(Class(obo:IDO_0000028)) Declaration(Class(obo:IDO_0000029)) Declaration(Class(obo:IDO_0000030)) Declaration(Class(obo:IDO_0000031)) Declaration(Class(obo:IDO_0000032)) Declaration(Class(obo:IDO_0000033)) Declaration(Class(obo:IDO_0000034)) Declaration(Class(obo:IDO_0000035)) Declaration(Class(obo:IDO_0000036)) Declaration(Class(obo:IDO_0000037)) Declaration(Class(obo:IDO_0000038)) Declaration(Class(obo:IDO_0000039)) Declaration(Class(obo:IDO_0000040)) Declaration(Class(obo:IDO_0000041)) Declaration(Class(obo:IDO_0000042)) Declaration(Class(obo:IDO_0000043)) Declaration(Class(obo:IDO_0000044)) Declaration(Class(obo:IDO_0000045)) Declaration(Class(obo:IDO_0000046)) Declaration(Class(obo:IDO_0000047)) Declaration(Class(obo:IDO_0000048)) Declaration(Class(obo:IDO_0000049)) Declaration(Class(obo:IDO_0000050)) Declaration(Class(obo:IDO_0000051)) Declaration(Class(obo:IDO_0000052)) Declaration(Class(obo:IDO_0000053)) Declaration(Class(obo:IDO_0000054)) Declaration(Class(obo:IDO_0000055)) Declaration(Class(obo:IDO_0000056)) Declaration(Class(obo:IDO_0000057)) Declaration(Class(obo:IDO_0000058)) Declaration(Class(obo:IDO_0000059)) Declaration(Class(obo:IDO_0000060)) Declaration(Class(obo:IDO_0000061)) Declaration(Class(obo:IDO_0000062)) Declaration(Class(obo:IDO_0000063)) Declaration(Class(obo:IDO_0000064)) Declaration(Class(obo:IDO_0000065)) Declaration(Class(obo:IDO_0000066)) Declaration(Class(obo:IDO_0000067)) Declaration(Class(obo:IDO_0000068)) Declaration(Class(obo:IDO_0000069)) Declaration(Class(obo:IDO_0000070)) Declaration(Class(obo:IDO_0000071)) Declaration(Class(obo:IDO_0000072)) Declaration(Class(obo:IDO_0000073)) Declaration(Class(obo:IDO_0000074)) Declaration(Class(obo:IDO_0000075)) Declaration(Class(obo:IDO_0000076)) Declaration(Class(obo:IDO_0000077)) Declaration(Class(obo:IDO_0000078)) Declaration(Class(obo:IDO_0000079)) Declaration(Class(obo:IDO_0000080)) Declaration(Class(obo:IDO_0000081)) Declaration(Class(obo:IDO_0000082)) Declaration(Class(obo:IDO_0000083)) Declaration(Class(obo:IDO_0000084)) Declaration(Class(obo:IDO_0000085)) Declaration(Class(obo:IDO_0000086)) Declaration(Class(obo:IDO_0000087)) Declaration(Class(obo:IDO_0000088)) Declaration(Class(obo:IDO_0000089)) Declaration(Class(obo:IDO_0000090)) Declaration(Class(obo:IDO_0000091)) Declaration(Class(obo:IDO_0000092)) Declaration(Class(obo:IDO_0000093)) Declaration(Class(obo:IDO_0000094)) Declaration(Class(obo:IDO_0000095)) Declaration(Class(obo:IDO_0000096)) Declaration(Class(obo:IDO_0000097)) Declaration(Class(obo:IDO_0000098)) Declaration(Class(obo:IDO_0000100)) Declaration(Class(obo:IDO_0000101)) Declaration(Class(obo:IDO_0000102)) Declaration(Class(obo:IDO_0000103)) Declaration(Class(obo:IDO_0000104)) Declaration(Class(obo:IDO_0000105)) Declaration(Class(obo:IDO_0000106)) Declaration(Class(obo:IDO_0000107)) Declaration(Class(obo:IDO_0000108)) Declaration(Class(obo:IDO_0000109)) Declaration(Class(obo:IDO_0000110)) Declaration(Class(obo:IDO_0000111)) Declaration(Class(obo:IDO_0000112)) Declaration(Class(obo:IDO_0000113)) Declaration(Class(obo:IDO_0000114)) Declaration(Class(obo:IDO_0000115)) Declaration(Class(obo:IDO_0000116)) Declaration(Class(obo:IDO_0000117)) Declaration(Class(obo:IDO_0000118)) Declaration(Class(obo:IDO_0000119)) Declaration(Class(obo:IDO_0000200)) Declaration(Class(obo:IDO_0000201)) Declaration(Class(obo:IDO_0000204)) Declaration(Class(obo:IDO_0000205)) Declaration(Class(obo:IDO_0000206)) Declaration(Class(obo:IDO_0000207)) Declaration(Class(obo:IDO_0000208)) Declaration(Class(obo:IDO_0000209)) Declaration(Class(obo:IDO_0000210)) Declaration(Class(obo:IDO_0000211)) Declaration(Class(obo:IDO_0000212)) Declaration(Class(obo:IDO_0000213)) Declaration(Class(obo:IDO_0000214)) Declaration(Class(obo:IDO_0000215)) Declaration(Class(obo:IDO_0000216)) Declaration(Class(obo:IDO_0000217)) Declaration(Class(obo:IDO_0000218)) Declaration(Class(obo:IDO_0000219)) Declaration(Class(obo:IDO_0000220)) Declaration(Class(obo:IDO_0000221)) Declaration(Class(obo:IDO_0000222)) Declaration(Class(obo:IDO_0000223)) Declaration(Class(obo:IDO_0000224)) Declaration(Class(obo:IDO_0000225)) Declaration(Class(obo:IDO_0000226)) Declaration(Class(obo:IDO_0000227)) Declaration(Class(obo:IDO_0000228)) Declaration(Class(obo:IDO_0000229)) Declaration(Class(obo:IDO_0000230)) Declaration(Class(obo:IDO_0000231)) Declaration(Class(obo:IDO_0000232)) Declaration(Class(obo:IDO_0000233)) Declaration(Class(obo:IDO_0000300)) Declaration(Class(obo:IDO_0000301)) Declaration(Class(obo:IDO_0000302)) Declaration(Class(obo:IDO_0000303)) Declaration(Class(obo:IDO_0000305)) Declaration(Class(obo:IDO_0000306)) Declaration(Class(obo:IDO_0000400)) Declaration(Class(obo:IDO_0000401)) Declaration(Class(obo:IDO_0000402)) Declaration(Class(obo:IDO_0000403)) Declaration(Class(obo:IDO_0000404)) Declaration(Class(obo:IDO_0000405)) Declaration(Class(obo:IDO_0000406)) Declaration(Class(obo:IDO_0000407)) Declaration(Class(obo:IDO_0000408)) Declaration(Class(obo:IDO_0000409)) Declaration(Class(obo:IDO_0000410)) Declaration(Class(obo:IDO_0000411)) Declaration(Class(obo:IDO_0000412)) Declaration(Class(obo:IDO_0000413)) Declaration(Class(obo:IDO_0000414)) Declaration(Class(obo:IDO_0000415)) Declaration(Class(obo:IDO_0000416)) Declaration(Class(obo:IDO_0000417)) Declaration(Class(obo:IDO_0000418)) Declaration(Class(obo:IDO_0000419)) Declaration(Class(obo:IDO_0000420)) Declaration(Class(obo:IDO_0000421)) Declaration(Class(obo:IDO_0000422)) Declaration(Class(obo:IDO_0000423)) Declaration(Class(obo:IDO_0000424)) Declaration(Class(obo:IDO_0000425)) Declaration(Class(obo:IDO_0000426)) Declaration(Class(obo:IDO_0000427)) Declaration(Class(obo:IDO_0000428)) Declaration(Class(obo:IDO_0000429)) Declaration(Class(obo:IDO_0000430)) Declaration(Class(obo:IDO_0000431)) Declaration(Class(obo:IDO_0000432)) Declaration(Class(obo:IDO_0000433)) Declaration(Class(obo:IDO_0000434)) Declaration(Class(obo:IDO_0000435)) Declaration(Class(obo:IDO_0000436)) Declaration(Class(obo:IDO_0000437)) Declaration(Class(obo:IDO_0000438)) Declaration(Class(obo:IDO_0000439)) Declaration(Class(obo:IDO_0000440)) Declaration(Class(obo:IDO_0000441)) Declaration(Class(obo:IDO_0000442)) Declaration(Class(obo:IDO_0000443)) Declaration(Class(obo:IDO_0000444)) Declaration(Class(obo:IDO_0000445)) Declaration(Class(obo:IDO_0000446)) Declaration(Class(obo:IDO_0000447)) Declaration(Class(obo:IDO_0000448)) Declaration(Class(obo:IDO_0000449)) Declaration(Class(obo:IDO_0000450)) Declaration(Class(obo:IDO_0000451)) Declaration(Class(obo:IDO_0000452)) Declaration(Class(obo:IDO_0000453)) Declaration(Class(obo:IDO_0000454)) Declaration(Class(obo:IDO_0000455)) Declaration(Class(obo:IDO_0000456)) Declaration(Class(obo:IDO_0000457)) Declaration(Class(obo:IDO_0000458)) Declaration(Class(obo:IDO_0000459)) Declaration(Class(obo:IDO_0000460)) Declaration(Class(obo:IDO_0000461)) Declaration(Class(obo:IDO_0000462)) Declaration(Class(obo:IDO_0000463)) Declaration(Class(obo:IDO_0000464)) Declaration(Class(obo:IDO_0000466)) Declaration(Class(obo:IDO_0000467)) Declaration(Class(obo:IDO_0000468)) Declaration(Class(obo:IDO_0000469)) Declaration(Class(obo:IDO_0000470)) Declaration(Class(obo:IDO_0000471)) Declaration(Class(obo:IDO_0000472)) Declaration(Class(obo:IDO_0000473)) Declaration(Class(obo:IDO_0000474)) Declaration(Class(obo:IDO_0000475)) Declaration(Class(obo:IDO_0000476)) Declaration(Class(obo:IDO_0000477)) Declaration(Class(obo:IDO_0000478)) Declaration(Class(obo:IDO_0000479)) Declaration(Class(obo:IDO_0000480)) Declaration(Class(obo:IDO_0000481)) Declaration(Class(obo:IDO_0000482)) Declaration(Class(obo:IDO_0000483)) Declaration(Class(obo:IDO_0000484)) Declaration(Class(obo:IDO_0000485)) Declaration(Class(obo:IDO_0000486)) Declaration(Class(obo:IDO_0000487)) Declaration(Class(obo:IDO_0000488)) Declaration(Class(obo:IDO_0000489)) Declaration(Class(obo:IDO_0000490)) Declaration(Class(obo:IDO_0000491)) Declaration(Class(obo:IDO_0000492)) Declaration(Class(obo:IDO_0000493)) Declaration(Class(obo:IDO_0000494)) Declaration(Class(obo:IDO_0000495)) Declaration(Class(obo:IDO_0000496)) Declaration(Class(obo:IDO_0000497)) Declaration(Class(obo:IDO_0000498)) Declaration(Class(obo:IDO_0000499)) Declaration(Class(obo:IDO_0000500)) Declaration(Class(obo:IDO_0000501)) Declaration(Class(obo:IDO_0000502)) Declaration(Class(obo:IDO_0000503)) Declaration(Class(obo:IDO_0000504)) Declaration(Class(obo:IDO_0000505)) Declaration(Class(obo:IDO_0000506)) Declaration(Class(obo:IDO_0000507)) Declaration(Class(obo:IDO_0000508)) Declaration(Class(obo:IDO_0000509)) Declaration(Class(obo:IDO_0000511)) Declaration(Class(obo:IDO_0000512)) Declaration(Class(obo:IDO_0000513)) Declaration(Class(obo:IDO_0000514)) Declaration(Class(obo:IDO_0000515)) Declaration(Class(obo:IDO_0000516)) Declaration(Class(obo:IDO_0000519)) Declaration(Class(obo:IDO_0000520)) Declaration(Class(obo:IDO_0000522)) Declaration(Class(obo:IDO_0000523)) Declaration(Class(obo:IDO_0000524)) Declaration(Class(obo:IDO_0000525)) Declaration(Class(obo:IDO_0000526)) Declaration(Class(obo:IDO_0000527)) Declaration(Class(obo:IDO_0000528)) Declaration(Class(obo:IDO_0000530)) Declaration(Class(obo:IDO_0000531)) Declaration(Class(obo:IDO_0000532)) Declaration(Class(obo:IDO_0000533)) Declaration(Class(obo:IDO_0000534)) Declaration(Class(obo:IDO_0000535)) Declaration(Class(obo:IDO_0000536)) Declaration(Class(obo:IDO_0000537)) Declaration(Class(obo:IDO_0000538)) Declaration(Class(obo:IDO_0000539)) Declaration(Class(obo:IDO_0000540)) Declaration(Class(obo:IDO_0000541)) Declaration(Class(obo:IDO_0000542)) Declaration(Class(obo:IDO_0000543)) Declaration(Class(obo:IDO_0000544)) Declaration(Class(obo:IDO_0000545)) Declaration(Class(obo:IDO_0000546)) Declaration(Class(obo:IDO_0000547)) Declaration(Class(obo:IDO_0000548)) Declaration(Class(obo:IDO_0000549)) Declaration(Class(obo:IDO_0000550)) Declaration(Class(obo:IDO_0000551)) Declaration(Class(obo:IDO_0000552)) Declaration(Class(obo:IDO_0000553)) Declaration(Class(obo:IDO_0000554)) Declaration(Class(obo:IDO_0000555)) Declaration(Class(obo:IDO_0000556)) Declaration(Class(obo:IDO_0000557)) Declaration(Class(obo:IDO_0000558)) Declaration(Class(obo:IDO_0000559)) Declaration(Class(obo:IDO_0000560)) Declaration(Class(obo:IDO_0000561)) Declaration(Class(obo:IDO_0000562)) Declaration(Class(obo:IDO_0000563)) Declaration(Class(obo:IDO_0000564)) Declaration(Class(obo:IDO_0000565)) Declaration(Class(obo:IDO_0000566)) Declaration(Class(obo:IDO_0000567)) Declaration(Class(obo:IDO_0000568)) Declaration(Class(obo:IDO_0000569)) Declaration(Class(obo:IDO_0000570)) Declaration(Class(obo:IDO_0000571)) Declaration(Class(obo:IDO_0000572)) Declaration(Class(obo:IDO_0000573)) Declaration(Class(obo:IDO_0000574)) Declaration(Class(obo:IDO_0000575)) Declaration(Class(obo:IDO_0000576)) Declaration(Class(obo:IDO_0000577)) Declaration(Class(obo:IDO_0000578)) Declaration(Class(obo:IDO_0000579)) Declaration(Class(obo:IDO_0000580)) Declaration(Class(obo:IDO_0000581)) Declaration(Class(obo:IDO_0000582)) Declaration(Class(obo:IDO_0000583)) Declaration(Class(obo:IDO_0000584)) Declaration(Class(obo:IDO_0000585)) Declaration(Class(obo:IDO_0000586)) Declaration(Class(obo:IDO_0000587)) Declaration(Class(obo:IDO_0000588)) Declaration(Class(obo:IDO_0000589)) Declaration(Class(obo:IDO_0000590)) Declaration(Class(obo:IDO_0000591)) Declaration(Class(obo:IDO_0000592)) Declaration(Class(obo:IDO_0000593)) Declaration(Class(obo:IDO_0000594)) Declaration(Class(obo:IDO_0000595)) Declaration(Class(obo:IDO_0000596)) Declaration(Class(obo:IDO_0000597)) Declaration(Class(obo:IDO_0000598)) Declaration(Class(obo:IDO_0000599)) Declaration(Class(obo:IDO_0000600)) Declaration(Class(obo:IDO_0000601)) Declaration(Class(obo:IDO_0000602)) Declaration(Class(obo:IDO_0000603)) Declaration(Class(obo:IDO_0000604)) Declaration(Class(obo:IDO_0000605)) Declaration(Class(obo:IDO_0000606)) Declaration(Class(obo:IDO_0000607)) Declaration(Class(obo:IDO_0000608)) Declaration(Class(obo:IDO_0000609)) Declaration(Class(obo:IDO_0000610)) Declaration(Class(obo:IDO_0000611)) Declaration(Class(obo:IDO_0000612)) Declaration(Class(obo:IDO_0000613)) Declaration(Class(obo:IDO_0000614)) Declaration(Class(obo:IDO_0000615)) Declaration(Class(obo:IDO_0000616)) Declaration(Class(obo:IDO_0000617)) Declaration(Class(obo:IDO_0000618)) Declaration(Class(obo:IDO_0000619)) Declaration(Class(obo:IDO_0000621)) Declaration(Class(obo:IDO_0000622)) Declaration(Class(obo:IDO_0000623)) Declaration(Class(obo:IDO_0000624)) Declaration(Class(obo:IDO_0000625)) Declaration(Class(obo:IDO_0000626)) Declaration(Class(obo:IDO_0000627)) Declaration(Class(obo:IDO_0000628)) Declaration(Class(obo:IDO_0000629)) Declaration(Class(obo:IDO_0000630)) Declaration(Class(obo:IDO_0000631)) Declaration(Class(obo:IDO_0000632)) Declaration(Class(obo:IDO_0000633)) Declaration(Class(obo:IDO_0000635)) Declaration(Class(obo:IDO_0000636)) Declaration(Class(obo:IDO_0000637)) Declaration(Class(obo:IDO_0000638)) Declaration(Class(obo:IDO_0000639)) Declaration(Class(obo:IDO_0000640)) Declaration(Class(obo:IDO_0000642)) Declaration(Class(obo:IDO_0000643)) Declaration(Class(obo:IDO_0000644)) Declaration(Class(obo:IDO_0000645)) Declaration(Class(obo:IDO_0000646)) Declaration(Class(obo:IDO_0000647)) Declaration(Class(obo:IDO_0000648)) Declaration(Class(obo:IDO_0000649)) Declaration(Class(obo:IDO_0000650)) Declaration(Class(obo:IDO_0000651)) Declaration(Class(obo:IDO_0000652)) Declaration(Class(obo:IDO_0000653)) Declaration(Class(obo:IDO_0000654)) Declaration(Class(obo:IDO_0000655)) Declaration(Class(obo:IDO_0000656)) Declaration(Class(obo:IDO_0000657)) Declaration(Class(obo:IDO_0000658)) Declaration(Class(obo:IDO_0000659)) Declaration(Class(obo:IDO_0000662)) Declaration(Class(obo:IDO_0000663)) Declaration(Class(obo:IDO_0000665)) Declaration(Class(obo:IDO_0000666)) Declaration(Class(obo:IDO_0000667)) Declaration(Class(obo:IDO_0001002)) Declaration(Class(obo:IDO_0001003)) Declaration(Class(obo:IDO_0001004)) Declaration(Class(obo:IDO_0001005)) Declaration(Class(obo:IDO_0001006)) Declaration(Class(obo:IDO_0001007)) Declaration(Class(obo:IDO_0001008)) Declaration(Class(obo:IDO_0001009)) Declaration(Class(obo:IDO_0001010)) Declaration(Class(obo:IDO_0001011)) Declaration(Class(obo:IDO_0001012)) Declaration(Class(obo:IDO_0001013)) Declaration(Class(obo:IDO_0001014)) Declaration(Class(obo:MONDO_0002428)) Declaration(Class(obo:MONDO_0005136)) Declaration(Class(obo:MONDO_0005920)) Declaration(Class(obo:NCBITaxon_1)) Declaration(Class(obo:NCBITaxon_10090)) Declaration(Class(obo:NCBITaxon_10239)) Declaration(Class(obo:NCBITaxon_157969)) Declaration(Class(obo:NCBITaxon_2)) Declaration(Class(obo:NCBITaxon_2157)) Declaration(Class(obo:NCBITaxon_2759)) Declaration(Class(obo:NCBITaxon_29176)) Declaration(Class(obo:NCBITaxon_32524)) Declaration(Class(obo:NCBITaxon_33154)) Declaration(Class(obo:NCBITaxon_33208)) Declaration(Class(obo:NCBITaxon_33213)) Declaration(Class(obo:NCBITaxon_33317)) Declaration(Class(obo:NCBITaxon_33340)) Declaration(Class(obo:NCBITaxon_40674)) Declaration(Class(obo:NCBITaxon_42890)) Declaration(Class(obo:NCBITaxon_50557)) Declaration(Class(obo:NCBITaxon_5280)) Declaration(Class(obo:NCBITaxon_56140)) Declaration(Class(obo:NCBITaxon_5654)) Declaration(Class(obo:NCBITaxon_5658)) Declaration(Class(obo:NCBITaxon_5659)) Declaration(Class(obo:NCBITaxon_5661)) Declaration(Class(obo:NCBITaxon_5664)) Declaration(Class(obo:NCBITaxon_5671)) Declaration(Class(obo:NCBITaxon_5690)) Declaration(Class(obo:NCBITaxon_5691)) Declaration(Class(obo:NCBITaxon_5693)) Declaration(Class(obo:NCBITaxon_5800)) Declaration(Class(obo:NCBITaxon_5801)) Declaration(Class(obo:NCBITaxon_5802)) Declaration(Class(obo:NCBITaxon_5804)) Declaration(Class(obo:NCBITaxon_5806)) Declaration(Class(obo:NCBITaxon_5807)) Declaration(Class(obo:NCBITaxon_5809)) Declaration(Class(obo:NCBITaxon_5811)) Declaration(Class(obo:NCBITaxon_5820)) Declaration(Class(obo:NCBITaxon_5821)) Declaration(Class(obo:NCBITaxon_5825)) Declaration(Class(obo:NCBITaxon_5833)) Declaration(Class(obo:NCBITaxon_5850)) Declaration(Class(obo:NCBITaxon_5855)) Declaration(Class(obo:NCBITaxon_5861)) Declaration(Class(obo:NCBITaxon_6181)) Declaration(Class(obo:NCBITaxon_6182)) Declaration(Class(obo:NCBITaxon_6183)) Declaration(Class(obo:NCBITaxon_6185)) Declaration(Class(obo:NCBITaxon_6447)) Declaration(Class(obo:NCBITaxon_6448)) Declaration(Class(obo:NCBITaxon_6524)) Declaration(Class(obo:NCBITaxon_6525)) Declaration(Class(obo:NCBITaxon_70999)) Declaration(Class(obo:NCBITaxon_7147)) Declaration(Class(obo:NCBITaxon_7148)) Declaration(Class(obo:NCBITaxon_7164)) Declaration(Class(obo:NCBITaxon_7198)) 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Declaration(AnnotationProperty(obo:IAO_0000600)) Declaration(AnnotationProperty(obo:IAO_0000601)) Declaration(AnnotationProperty(obo:IAO_0000602)) Declaration(AnnotationProperty(obo:IAO_0000603)) Declaration(AnnotationProperty(obo:IAO_0000700)) Declaration(AnnotationProperty(obo:IAO_0006011)) Declaration(AnnotationProperty(obo:IAO_0006012)) Declaration(AnnotationProperty(obo:IAO_0010000)) Declaration(AnnotationProperty(obo:IAO_0100001)) Declaration(AnnotationProperty(obo:OBI_9991118)) Declaration(AnnotationProperty(obo:OMO_0001001)) Declaration(AnnotationProperty(obo:OMO_0002000)) Declaration(AnnotationProperty(obo:OMO_0003000)) Declaration(AnnotationProperty(obo:OMO_0003001)) Declaration(AnnotationProperty(obo:OMO_0003002)) Declaration(AnnotationProperty(obo:OMO_0003003)) Declaration(AnnotationProperty(obo:OMO_0003004)) Declaration(AnnotationProperty(obo:OMO_0003005)) Declaration(AnnotationProperty(obo:OMO_0003006)) Declaration(AnnotationProperty(obo:OMO_0003007)) Declaration(AnnotationProperty(obo:OMO_0003008)) Declaration(AnnotationProperty(obo:OMO_0003009)) Declaration(AnnotationProperty(obo:RO_0001900)) Declaration(AnnotationProperty(obo:RO_0002175)) Declaration(AnnotationProperty(obo:RO_0002416)) Declaration(AnnotationProperty(obo:RO_0002421)) Declaration(AnnotationProperty(obo:RO_0002422)) Declaration(AnnotationProperty(obo:UBPROP_0000003)) Declaration(AnnotationProperty(obo:UBPROP_0000012)) Declaration(AnnotationProperty(chebi:charge)) Declaration(AnnotationProperty(chebi:formula)) Declaration(AnnotationProperty(chebi:inchi)) Declaration(AnnotationProperty(chebi:inchikey)) Declaration(AnnotationProperty(chebi:mass)) Declaration(AnnotationProperty(chebi:monoisotopicmass)) Declaration(AnnotationProperty(chebi:smiles)) Declaration(AnnotationProperty(ncbitaxon:has_rank)) Declaration(AnnotationProperty(dc:contributor)) Declaration(AnnotationProperty(dc:coverage)) Declaration(AnnotationProperty(dc:creator)) Declaration(AnnotationProperty(dc:date)) Declaration(AnnotationProperty(dc:description)) Declaration(AnnotationProperty(dc:format)) Declaration(AnnotationProperty(dc:identifier)) Declaration(AnnotationProperty(dc:language)) Declaration(AnnotationProperty(dc:license)) Declaration(AnnotationProperty(dc:member)) Declaration(AnnotationProperty(dc:publisher)) Declaration(AnnotationProperty(dc:relation)) Declaration(AnnotationProperty(dc:rights)) Declaration(AnnotationProperty(dc:source)) Declaration(AnnotationProperty(dc:subject)) Declaration(AnnotationProperty(dc:title)) Declaration(AnnotationProperty(dc:type)) Declaration(AnnotationProperty(terms:contributor)) Declaration(AnnotationProperty(terms:created)) Declaration(AnnotationProperty(terms:license)) Declaration(AnnotationProperty(terms:source)) Declaration(AnnotationProperty(oboInOwl:SynonymType)) Declaration(AnnotationProperty(oboInOwl:created_by)) Declaration(AnnotationProperty(oboInOwl:creation_date)) Declaration(AnnotationProperty(oboInOwl:hasAlternativeId)) Declaration(AnnotationProperty(oboInOwl:hasBroadSynonym)) Declaration(AnnotationProperty(oboInOwl:hasDbXref)) Declaration(AnnotationProperty(oboInOwl:hasDefinition)) Declaration(AnnotationProperty(oboInOwl:hasExactSynonym)) Declaration(AnnotationProperty(oboInOwl:hasNarrowSynonym)) Declaration(AnnotationProperty(oboInOwl:hasOBONamespace)) Declaration(AnnotationProperty(oboInOwl:hasRelatedSynonym)) Declaration(AnnotationProperty(oboInOwl:hasURI)) Declaration(AnnotationProperty(oboInOwl:id)) Declaration(AnnotationProperty(oboInOwl:inSubset)) Declaration(AnnotationProperty(oboInOwl:shorthand)) Declaration(AnnotationProperty(rdfs:comment)) Declaration(AnnotationProperty(rdfs:isDefinedBy)) Declaration(AnnotationProperty(rdfs:label)) Declaration(AnnotationProperty(rdfs:seeAlso)) Declaration(AnnotationProperty(foaf:homepage)) Declaration(AnnotationProperty(foaf:mbox)) Declaration(AnnotationProperty(foaf:page)) Declaration(Datatype(xsd:date)) ############################ # Annotation Properties ############################ # Annotation Property: obo:BFO_0000179 (BFO OWL specification label) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000179 "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification."@en) AnnotationAssertion(obo:IAO_0000232 obo:BFO_0000179 "Really of interest to developers only"@en) AnnotationAssertion(rdfs:label obo:BFO_0000179 "BFO OWL specification label"@en) SubAnnotationPropertyOf(obo:BFO_0000179 rdfs:label) # Annotation Property: obo:BFO_0000180 (BFO CLIF specification label) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000180 "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2"@en) AnnotationAssertion(obo:IAO_0000119 obo:BFO_0000180 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000232 obo:BFO_0000180 "Really of interest to developers only"@en) AnnotationAssertion(rdfs:label obo:BFO_0000180 "BFO CLIF specification label"@en) SubAnnotationPropertyOf(obo:BFO_0000180 rdfs:label) # Annotation Property: obo:IAO_0000111 (editor preferred term) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000111 "editor preferred term"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000111 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000111 "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000111 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000111 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000111 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000111 "editor preferred term"@en) # Annotation Property: obo:IAO_0000112 (example of usage) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000112 "example"@en) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000112 "example of usage"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000112 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000112 "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000112 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000112 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000112 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000112 "example of usage"@en) # Annotation Property: obo:IAO_0000113 (in branch) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000113 "in branch"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000113 "An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000113 "GROUP:OBI"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000113 "OBI_0000277"@en) AnnotationAssertion(rdfs:label obo:IAO_0000113 "in branch"@en) # Annotation Property: obo:IAO_0000114 (has curation status) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000114 "has curation status"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000114 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000114 "PERSON:Bill Bug"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000114 "PERSON:Melanie Courtot"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000114 "OBI_0000281"@en) AnnotationAssertion(rdfs:label obo:IAO_0000114 "has curation status"@en) # Annotation Property: obo:IAO_0000115 (definition) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000115 "definition"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000115 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000115 "The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000115 "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000115 "2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000115 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000115 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000115 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition") AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition"@en) AnnotationAssertion(rdfs:label obo:IAO_0000115 "textual definition") # Annotation Property: obo:IAO_0000116 (editor note) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000116 "editor note"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000116 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000116 "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000116 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000116 "GROUP:OBI:"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000116 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000116 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000116 "editor note"@en) # Annotation Property: obo:IAO_0000117 (term editor) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000117 "term editor"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000117 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000117 "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000117 "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000117 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000117 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000117 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000117 "term editor"@en) # Annotation Property: obo:IAO_0000118 (alternative label) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000118 "alternative label"@en) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000118 "alternative term"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000118 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000118 "A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like."@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000118 "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000118 "OBO Operations committee") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000118 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000118 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:comment obo:IAO_0000118 "Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).") AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000118 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000118 "alternative label"@en) AnnotationAssertion(rdfs:label obo:IAO_0000118 "alternative term"@en) # Annotation Property: obo:IAO_0000119 (definition source) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000119 "definition source"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000119 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000119 "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000119 "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000119 "PERSON:Daniel Schober"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000119 "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w") AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000119 "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000119 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000119 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000119 "definition source"@en) # Annotation Property: obo:IAO_0000231 (has obsolescence reason) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000231 "has obsolescence reason"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000231 "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000231 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000231 "PERSON:Melanie Courtot"@en) AnnotationAssertion(rdfs:label obo:IAO_0000231 "has obsolescence reason"@en) # Annotation Property: obo:IAO_0000232 (curator note) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000232 "curator note"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000232 obo:IAO_0000122) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000232 "An administrative note of use for a curator but of no use for a user"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000232 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000232 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000232 "curator note"@en) # Annotation Property: obo:IAO_0000233 (term tracker item) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000233 "term tracker item") AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000233 "term tracker item"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000233 "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000233 "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000233 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000233 "An IRI or similar locator for a request or discussion of an ontology term.") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000233 "An IRI or similar locator for a request or discussion of an ontology term."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000233 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000233 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000233 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000233 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) AnnotationAssertion(rdfs:comment obo:IAO_0000233 "The 'tracker item' can associate a tracker with a specific ontology term.") AnnotationAssertion(rdfs:comment obo:IAO_0000233 "The 'tracker item' can associate a tracker with a specific ontology term."@en) AnnotationAssertion(rdfs:label obo:IAO_0000233 "term tracker item"@en) # Annotation Property: obo:IAO_0000234 (ontology term requester) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000234 "ontology term requester"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000234 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000234 "The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000234 "The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000234 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000234 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000234 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000234 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) AnnotationAssertion(rdfs:comment obo:IAO_0000234 "The 'term requester' can credit the person, organization or project who request the ontology term.") AnnotationAssertion(rdfs:label obo:IAO_0000234 "ontology term requester"@en) # Annotation Property: obo:IAO_0000411 (is denotator type) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000411 "is denotator type"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000411 "Relates an class defined in an ontology, to the type of it's denotator"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000411 "relates an class defined in an ontology, to the type of it's denotator") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000411 "In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000411 "In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000411 "Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000411 "Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000411 "is denotator type") AnnotationAssertion(rdfs:label obo:IAO_0000411 "is denotator type"@en) # Annotation Property: obo:IAO_0000412 (imported from) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000412 "imported from"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000412 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000412 "For external terms/classes, the ontology from which the term was imported"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000412 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000412 "PERSON:Melanie Courtot"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000412 "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000412 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000412 "imported from"@en) # Annotation Property: obo:IAO_0000424 (expand expression to) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000424 "expand expression to"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000424 "ObjectProperty: RO_0002104 Label: has plasma membrane part Annotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\" "@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000424 "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000424 "Chris Mungall") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000424 "Chris Mungall"@en) AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to"@en) # Annotation Property: obo:IAO_0000425 (expand assertion to) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000425 "expand assertion to"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000425 "ObjectProperty: RO??? Label: spatially disjoint from Annotations: expand_assertion_to \"DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\" "@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000425 "A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000425 "Chris Mungall"@en) AnnotationAssertion(rdfs:label obo:IAO_0000425 "expand assertion to"@en) # Annotation Property: obo:IAO_0000426 (first order logic expression) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000426 "first order logic expression"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000426 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000426 "first order logic expression"@en) # Annotation Property: obo:IAO_0000427 (antisymmetric property) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000427 "antisymmetric property"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000427 "part_of antisymmetric property xsd:true"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000427 "Use boolean value xsd:true to indicate that the property is an antisymmetric property"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000427 "use boolean value xsd:true to indicate that the property is an antisymmetric property"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000427 "Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000427 "antisymmetric property"@en) SubAnnotationPropertyOf(obo:IAO_0000427 obo:OMO_0001001) # Annotation Property: obo:IAO_0000589 (OBO foundry unique label) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000589 "OBO foundry unique label"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000589 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000589 "An alternative name for a class or property which is unique across the OBO Foundry."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000589 "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000589 "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools ."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000589 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000589 "PERSON:Bjoern Peters"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000589 "PERSON:Chris Mungall"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000589 "PERSON:Melanie Courtot"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000589 "GROUP:OBO Foundry "@en) AnnotationAssertion(rdfs:label obo:IAO_0000589 "OBO foundry unique label"@en) # Annotation Property: obo:IAO_0000596 (has ID digit count) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000596 "has ID digit count"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000596 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\"") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000596 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000596 "Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix\" annotation property value concatenated with an integer in the id range (left padded with \"0\"s to make this many digits)") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000596 "Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix\" annotation property value concatenated with an integer in the id range (left padded with \"0\"s to make this many digits)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000596 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000596 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000596 "has ID digit count"@en) # Annotation Property: obo:IAO_0000597 (has ID range allocated to) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000597 "has ID range allocated"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000597 "Datatype: idrange:1 Annotations: 'has ID range allocated to': \"Chris Mungall\" EquivalentTo: xsd:integer[> 2151 , <= 2300] ") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000597 "Datatype: idrange:1 Annotations: 'has ID range allocated to': \"Chris Mungall\" EquivalentTo: xsd:integer[> 2151 , <= 2300] "@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000597 "Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000597 "Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000597 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000597 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000597 "has ID range allocated to"@en) # Annotation Property: obo:IAO_0000598 (has ID policy for) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000598 "has ID policy for"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000598 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\"") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000598 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000598 "Relating an ontology used to record id policy to the ontology namespace whose policy it manages") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000598 "Relating an ontology used to record id policy to the ontology namespace whose policy it manages"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000598 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000598 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000598 "has ID policy for") AnnotationAssertion(rdfs:label obo:IAO_0000598 "has ID policy for"@en) # Annotation Property: obo:IAO_0000599 (has ID prefix) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000599 "has ID prefix"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000599 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\"") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000599 "Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000599 "Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with \"0\"s to make this many digits) to construct an ID for a term being created.") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000599 "Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with \"0\"s to make this many digits) to construct an ID for a term being created."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000599 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000599 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000599 "has ID prefix"@en) # Annotation Property: obo:IAO_0000600 (elucidation) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000600 "elucidation"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000600 "person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000600 "Person:Barry Smith"@en) AnnotationAssertion(obo:IAO_0000600 obo:IAO_0000600 "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000600 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000600 "elucidation"@en) # Annotation Property: obo:IAO_0000601 (has associated axiom(nl)) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000601 "has associated axiom(nl)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000601 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000601 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000600 obo:IAO_0000601 "An axiom associated with a term expressed using natural language"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000601 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000601 "has associated axiom(nl)"@en) # Annotation Property: obo:IAO_0000602 (has associated axiom(fol)) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000602 "has associated axiom(fol)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000602 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000602 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000600 obo:IAO_0000602 "An axiom expressed in first order logic using CLIF syntax"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0000602 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0000602 "has associated axiom(fol)"@en) # Annotation Property: obo:IAO_0000603 (is allocated id range) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000603 "is allocated id range"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000603 "Add as annotation triples in the granting ontology"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000603 "Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. \"IAO_0020000-IAO_0020999\""@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000603 "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:comment obo:IAO_0000603 "Add as annotation triples in the granting ontology"@en) AnnotationAssertion(rdfs:label obo:IAO_0000603 "is allocated id range"@en) # Annotation Property: obo:IAO_0000700 (has ontology root term) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000700 "has ontology root term"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000700 "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000700 "Nicolas Matentzoglu"@en) AnnotationAssertion(rdfs:label obo:IAO_0000700 "has ontology root term"@en) # Annotation Property: obo:IAO_0006011 (may be identical to) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0006011 "may be identical to"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0006011 "A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0006011 "David Osumi-Sutherland"@en) AnnotationAssertion(obo:IAO_0000233 obo:IAO_0006011 "#40"@en) AnnotationAssertion(obo:IAO_0000234 obo:IAO_0006011 "VFB"@en) AnnotationAssertion(rdfs:comment obo:IAO_0006011 "Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance."@en) AnnotationAssertion(rdfs:label obo:IAO_0006011 "may be identical to"@en) # Annotation Property: obo:IAO_0006012 (scheduled for obsoletion on or after) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0006012 "scheduled for obsoletion on or after"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0006012 "Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0006012 "Chris Mungall, Jie Zheng"@en) AnnotationAssertion(obo:IAO_0000233 obo:IAO_0006012 "https://github.com/geneontology/go-ontology/issues/15532"@en) AnnotationAssertion(obo:IAO_0000233 obo:IAO_0006012 "https://github.com/information-artifact-ontology/ontology-metadata/issues/32"@en) AnnotationAssertion(obo:IAO_0000234 obo:IAO_0006012 "GO ontology"@en) AnnotationAssertion(rdfs:label obo:IAO_0006012 "scheduled for obsoletion on or after"@en) AnnotationPropertyRange(obo:IAO_0006012 xsd:dateTime) # Annotation Property: obo:IAO_0010000 (has axiom label) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0010000 "has axiom id"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0010000 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0010000 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000600 obo:IAO_0010000 "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI"@en) AnnotationAssertion(rdfs:isDefinedBy obo:IAO_0010000 obo:iao.owl) AnnotationAssertion(rdfs:label obo:IAO_0010000 "has axiom label"@en) # Annotation Property: obo:IAO_0100001 (term replaced by) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0100001 "term replaced by"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0100001 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0100001 "Add as annotation triples in the granting ontology"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0100001 "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0100001 "Person:Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0100001 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:comment obo:IAO_0100001 "Add as annotation triples in the granting ontology"@en) AnnotationAssertion(rdfs:label obo:IAO_0100001 "term replaced by"@en) # Annotation Property: obo:OMO_0001001 (logical characteristic of object property) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0001001 "This is an annotation used on an object property to indicate a logical characterstic beyond what is possible in OWL.") AnnotationAssertion(obo:IAO_0000119 obo:OMO_0001001 "OBO Operations call") AnnotationAssertion(oboInOwl:created_by obo:OMO_0001001 ) AnnotationAssertion(rdfs:label obo:OMO_0001001 "logical characteristic of object property") # Annotation Property: obo:OMO_0002000 (defined by construct) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0002000 "'part disjoint with' 'defined by construct' \"\"\" PREFIX owl: PREFIX : ) AnnotationAssertion(dc:contributor obo:OMO_0002000 ) AnnotationAssertion(dc:contributor obo:OMO_0002000 ) AnnotationAssertion(rdfs:label obo:OMO_0002000 "defined by construct") # Annotation Property: obo:OMO_0003000 (abbreviation) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003000 "CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003000 "A synonym type for describing abbreviations or initalisms") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003000 ) AnnotationAssertion(terms:contributor obo:OMO_0003000 ) AnnotationAssertion(terms:created obo:OMO_0003000 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003000 "abbreviation") SubAnnotationPropertyOf(obo:OMO_0003000 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003001 (ambiguous synonym) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003001 "A synonym type for describing ambiguous synonyms") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003001 ) AnnotationAssertion(terms:contributor obo:OMO_0003001 ) AnnotationAssertion(terms:created obo:OMO_0003001 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003001 "ambiguous synonym") SubAnnotationPropertyOf(obo:OMO_0003001 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003002 (dubious synonym) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003002 "A synonym type for describing dubious synonyms") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003002 ) AnnotationAssertion(terms:contributor obo:OMO_0003002 ) AnnotationAssertion(terms:created obo:OMO_0003002 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003002 "dubious synonym") SubAnnotationPropertyOf(obo:OMO_0003002 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003003 (layperson synonym) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003003 "EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003003 "A synonym type for describing layperson or colloquial synonyms") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003003 ) AnnotationAssertion(terms:contributor obo:OMO_0003003 ) AnnotationAssertion(terms:created obo:OMO_0003003 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003003 "layperson synonym") SubAnnotationPropertyOf(obo:OMO_0003003 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003004 (plural form) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003004 "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003004 "A synonym type for describing pluralization synonyms") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003004 ) AnnotationAssertion(terms:contributor obo:OMO_0003004 ) AnnotationAssertion(terms:created obo:OMO_0003004 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003004 "plural form") SubAnnotationPropertyOf(obo:OMO_0003004 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003005 (UK spelling synonym) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003005 "CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003005 "A synonym type for describing UK spelling variants") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003005 ) AnnotationAssertion(terms:contributor obo:OMO_0003005 ) AnnotationAssertion(terms:created obo:OMO_0003005 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003005 "UK spelling synonym") SubAnnotationPropertyOf(obo:OMO_0003005 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003006 (misspelling) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003006 "A synonym type for common misspellings") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003006 ) AnnotationAssertion(terms:contributor obo:OMO_0003006 ) AnnotationAssertion(terms:created obo:OMO_0003006 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003006 "misspelling") SubAnnotationPropertyOf(obo:OMO_0003006 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003007 (misnomer) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003007 "A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003007 ) AnnotationAssertion(terms:contributor obo:OMO_0003007 ) AnnotationAssertion(terms:created obo:OMO_0003007 "2023-03-03"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003007 "misnomer") SubAnnotationPropertyOf(obo:OMO_0003007 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003008 (previous name) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003008 "MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol.") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003008 "A synonym type for names that have been used as primary labels in the past.") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003008 ) AnnotationAssertion(terms:contributor obo:OMO_0003008 ) AnnotationAssertion(terms:created obo:OMO_0003008 "2023-07-25"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003008 "previous name") SubAnnotationPropertyOf(obo:OMO_0003008 oboInOwl:SynonymType) # Annotation Property: obo:OMO_0003009 (legal name) AnnotationAssertion(obo:IAO_0000112 obo:OMO_0003009 "The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College") AnnotationAssertion(obo:IAO_0000115 obo:OMO_0003009 "A synonym type for the legal entity name") AnnotationAssertion(obo:IAO_0000233 obo:OMO_0003009 ) AnnotationAssertion(terms:contributor obo:OMO_0003009 ) AnnotationAssertion(terms:created obo:OMO_0003009 "2023-07-27"^^xsd:date) AnnotationAssertion(rdfs:label obo:OMO_0003009 "legal name") SubAnnotationPropertyOf(obo:OMO_0003009 oboInOwl:SynonymType) # Annotation Property: obo:RO_0001900 (temporal interpretation) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001900 "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.") AnnotationAssertion(rdfs:label obo:RO_0001900 "temporal interpretation") AnnotationAssertion(rdfs:label obo:RO_0001900 "temporal interpretation"@en) AnnotationAssertion(foaf:page obo:RO_0001900 "https://github.com/oborel/obo-relations/wiki/ROAndTime"^^xsd:anyURI) # Annotation Property: obo:RO_0002416 (logical macro assertion) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002416 "An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL.") AnnotationAssertion(rdfs:label obo:RO_0002416 "logical macro assertion"@en) # Annotation Property: obo:RO_0002421 (logical macro assertion on a property) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002421 "A logical macro assertion whose domain is an IRI for a property") AnnotationAssertion(rdfs:label obo:RO_0002421 "logical macro assertion on a property"@en) # Annotation Property: obo:RO_0002422 (logical macro assertion on an object property) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002422 "Used to annotate object properties to describe a logical meta-property or characteristic of the object property.") AnnotationAssertion(rdfs:label obo:RO_0002422 "logical macro assertion on an object property"@en) # Annotation Property: oboInOwl:hasBroadSynonym (has broad synonym) AnnotationAssertion(obo:IAO_0000115 oboInOwl:hasBroadSynonym "An alternative label for a class or property which has a more general meaning than the preferred name/primary label.") AnnotationAssertion(obo:IAO_0000117 oboInOwl:hasBroadSynonym ) AnnotationAssertion(obo:IAO_0000233 oboInOwl:hasBroadSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has broad synonym"@en) AnnotationAssertion(rdfs:seeAlso oboInOwl:hasBroadSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") SubAnnotationPropertyOf(oboInOwl:hasBroadSynonym obo:IAO_0000118) # Annotation Property: oboInOwl:hasExactSynonym (has exact synonym) AnnotationAssertion(obo:IAO_0000115 oboInOwl:hasExactSynonym "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.") AnnotationAssertion(obo:IAO_0000117 oboInOwl:hasExactSynonym ) AnnotationAssertion(obo:IAO_0000233 oboInOwl:hasExactSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has exact synonym"@en) AnnotationAssertion(rdfs:seeAlso oboInOwl:hasExactSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") SubAnnotationPropertyOf(oboInOwl:hasExactSynonym obo:IAO_0000118) # Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym) AnnotationAssertion(obo:IAO_0000115 oboInOwl:hasNarrowSynonym "An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.") AnnotationAssertion(obo:IAO_0000117 oboInOwl:hasNarrowSynonym ) AnnotationAssertion(obo:IAO_0000233 oboInOwl:hasNarrowSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/19") AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has narrow synonym"@en) AnnotationAssertion(rdfs:seeAlso oboInOwl:hasNarrowSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/19") SubAnnotationPropertyOf(oboInOwl:hasNarrowSynonym obo:IAO_0000118) # Annotation Property: oboInOwl:hasRelatedSynonym (has related synonym) AnnotationAssertion(obo:IAO_0000115 oboInOwl:hasRelatedSynonym "An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.") AnnotationAssertion(obo:IAO_0000117 oboInOwl:hasRelatedSynonym ) AnnotationAssertion(obo:IAO_0000233 oboInOwl:hasRelatedSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/21") AnnotationAssertion(rdfs:label oboInOwl:hasRelatedSynonym "has related synonym"@en) AnnotationAssertion(rdfs:seeAlso oboInOwl:hasRelatedSynonym "https://github.com/information-artifact-ontology/ontology-metadata/issues/21") SubAnnotationPropertyOf(oboInOwl:hasRelatedSynonym obo:IAO_0000118) # Annotation Property: oboInOwl:shorthand (shorthand) AnnotationAssertion(rdfs:label oboInOwl:shorthand "shorthand") # Annotation Property: rdfs:label (label) AnnotationAssertion(rdfs:label rdfs:label "label") ############################ # Object Properties ############################ # Object Property: obo:BFO_0000050 (part of) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000050 "is part of"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000050 "my brain is part of my body (continuant parthood, two material entities)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000050 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000050 "this day is part of this year (occurrent parthood)"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000050 "a core relation that holds between a part and its whole"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000050 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000050 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000050 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000050 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000050 "part_of"@en) AnnotationAssertion(obo:RO_0001900 obo:BFO_0000050 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:BFO_0000050 "part of"@en) AnnotationAssertion(rdfs:seeAlso obo:BFO_0000050 "http://www.obofoundry.org/ro/#OBO_REL:part_of") InverseObjectProperties(obo:BFO_0000050 obo:BFO_0000051) TransitiveObjectProperty(obo:BFO_0000050) # Object Property: obo:BFO_0000051 (has part) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000051 "has part"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000051 "my body has part my brain (continuant parthood, two material entities)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000051 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000051 "this year has part this day (occurrent parthood)"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000051 "a core relation that holds between a whole and its part"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000051 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000051 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000051 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000051 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000051 "has_part"@en) AnnotationAssertion(obo:RO_0001900 obo:BFO_0000051 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:BFO_0000051 "has part"@en) SubObjectPropertyOf(obo:BFO_0000051 owl:topObjectProperty) TransitiveObjectProperty(obo:BFO_0000051) # Object Property: obo:BFO_0000054 (realized in) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000054 "realized in"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000054 "this disease is realized in this disease course"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000054 "this fragility is realized in this shattering"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000054 "this investigator role is realized in this investigation"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000054 "is realized by"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000054 "realized_in"@en) AnnotationAssertion(obo:IAO_0000600 obo:BFO_0000054 "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en) AnnotationAssertion(rdfs:comment obo:BFO_0000054 "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000054 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000054 "realized in"@en) InverseObjectProperties(obo:BFO_0000054 obo:BFO_0000055) ObjectPropertyDomain(obo:BFO_0000054 obo:BFO_0000017) ObjectPropertyRange(obo:BFO_0000054 obo:BFO_0000015) # Object Property: obo:BFO_0000055 (realizes) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000055 "realizes"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000055 "this disease course realizes this disease"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000055 "this investigation realizes this investigator role"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000055 "this shattering realizes this fragility"@en) AnnotationAssertion(obo:IAO_0000600 obo:BFO_0000055 "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en) AnnotationAssertion(rdfs:comment obo:BFO_0000055 "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000055 obo:iao.owl) AnnotationAssertion(rdfs:label obo:BFO_0000055 "realizes"@en) ObjectPropertyDomain(obo:BFO_0000055 obo:BFO_0000015) ObjectPropertyRange(obo:BFO_0000055 obo:BFO_0000017) # Object Property: obo:BFO_0000062 (preceded by) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000062 "preceded by"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000062 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other."@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000062 "is preceded by"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000062 "preceded_by"@en) AnnotationAssertion(dc:source obo:BFO_0000062 "http://www.obofoundry.org/ro/#OBO_REL:preceded_by") AnnotationAssertion(rdfs:label obo:BFO_0000062 "preceded by"@en) InverseObjectProperties(obo:BFO_0000062 obo:BFO_0000063) TransitiveObjectProperty(obo:BFO_0000062) ObjectPropertyDomain(obo:BFO_0000062 obo:BFO_0000003) ObjectPropertyRange(obo:BFO_0000062 obo:BFO_0000003) # Object Property: obo:BFO_0000063 (precedes) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000063 "precedes"@en) AnnotationAssertion(rdfs:label obo:BFO_0000063 "precedes"@en) TransitiveObjectProperty(obo:BFO_0000063) ObjectPropertyDomain(obo:BFO_0000063 obo:BFO_0000003) ObjectPropertyRange(obo:BFO_0000063 obo:BFO_0000003) # Object Property: obo:BFO_0000066 (occurs in) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000066 "occurs in"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000066 "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000066 "occurs_in"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000066 "unfolds in"@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000066 "unfolds_in"@en) AnnotationAssertion(rdfs:comment obo:BFO_0000066 "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000066 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000066 "occurs in"@en) InverseObjectProperties(obo:BFO_0000066 obo:BFO_0000067) ObjectPropertyDomain(obo:BFO_0000066 obo:BFO_0000003) ObjectPropertyRange(obo:BFO_0000066 obo:BFO_0000004) # Object Property: obo:BFO_0000067 (contains process) AnnotationAssertion(obo:IAO_0000111 obo:BFO_0000067 "site of"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000067 "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en) AnnotationAssertion(rdfs:comment obo:BFO_0000067 "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000067 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000067 "contains process"@en) # Object Property: obo:IDO_0000660 (results_in) AnnotationAssertion(rdfs:label obo:IDO_0000660 "results_in"@en) # Object Property: obo:IDO_0000664 (has_material_basis_in) AnnotationAssertion(rdfs:label obo:IDO_0000664 "has_material_basis_in") ObjectPropertyRange(obo:IDO_0000664 obo:BFO_0000040) # Object Property: obo:OPL_0000055 (obsolete_has vector) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000055 "A relation between an organism and an organism that has vector role.") AnnotationAssertion(obo:IAO_0100001 obo:OPL_0000055 obo:RO_0002460) AnnotationAssertion(rdfs:label obo:OPL_0000055 "obsolete_has vector") AnnotationAssertion(owl:deprecated obo:OPL_0000055 "true"^^xsd:boolean) # Object Property: obo:OPL_0000065 (obsolete_has host) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000065 "A relation between an organism and an organism that has host role.") AnnotationAssertion(obo:IAO_0100001 obo:OPL_0000065 obo:RO_0002454) AnnotationAssertion(rdfs:label obo:OPL_0000065 "obsolete_has host") AnnotationAssertion(owl:deprecated obo:OPL_0000065 "true"^^xsd:boolean) # Object Property: obo:RO_0000052 (inheres in) AnnotationAssertion(obo:IAO_0000111 obo:RO_0000052 "inheres in"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000052 "this fragility inheres in this vase"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000052 "this fragility is a characteristic of this vase"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000052 "this red color inheres in this apple"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000052 "this red color is a characteristic of this apple"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000052 "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000052 "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000052 "A dependent inheres in its bearer at all times for which the dependent exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000052 "inheres_in"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0000052 obo:RO_0001901) AnnotationAssertion(rdfs:comment obo:RO_0000052 "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.") AnnotationAssertion(rdfs:label obo:RO_0000052 "characteristic of"@en) AnnotationAssertion(rdfs:label obo:RO_0000052 "inheres in"@en) InverseObjectProperties(obo:RO_0000052 obo:RO_0000053) FunctionalObjectProperty(obo:RO_0000052) # Object Property: obo:RO_0000053 (bearer of) AnnotationAssertion(obo:IAO_0000111 obo:RO_0000053 "bearer of"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000053 "this apple is bearer of this red color"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000053 "this vase is bearer of this fragility"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000053 "Inverse of characteristic_of"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000053 "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000053 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer_of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "is bearer of"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0000053 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0000053 "bearer of"@en) AnnotationAssertion(rdfs:label obo:RO_0000053 "has characteristic"@en) InverseFunctionalObjectProperty(obo:RO_0000053) ObjectPropertyRange(obo:RO_0000053 obo:BFO_0000020) # Object Property: obo:RO_0000056 (participates in) AnnotationAssertion(obo:IAO_0000111 obo:RO_0000056 "participates in"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000056 "this blood clot participates in this blood coagulation"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000056 "this input material (or this output material) participates in this process"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000056 "this investigator participates in this investigation"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000056 "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000056 "participates_in"@en) AnnotationAssertion(rdfs:label obo:RO_0000056 "participates in"@en) InverseObjectProperties(obo:RO_0000056 obo:RO_0000057) ObjectPropertyDomain(obo:RO_0000056 obo:BFO_0000002) ObjectPropertyRange(obo:RO_0000056 obo:BFO_0000003) # Object Property: obo:RO_0000057 (has participant) AnnotationAssertion(obo:IAO_0000111 obo:RO_0000057 "has participant"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000057 "this blood coagulation has participant this blood clot"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000057 "this investigation has participant this investigator"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000057 "this process has participant this input material (or this output material)"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000057 "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000057 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000057 "has_participant"@en) AnnotationAssertion(dc:source obo:RO_0000057 "http://www.obofoundry.org/ro/#OBO_REL:has_participant") AnnotationAssertion(terms:source obo:RO_0000057 "http://www.obofoundry.org/ro/#OBO_REL:has_participant") AnnotationAssertion(rdfs:label obo:RO_0000057 "has participant"@en) ObjectPropertyDomain(obo:RO_0000057 obo:BFO_0000003) ObjectPropertyRange(obo:RO_0000057 obo:BFO_0000002) # Object Property: obo:RO_0000058 (is concretized as) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000058 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000058 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000058 "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en) AnnotationAssertion(rdfs:label obo:RO_0000058 "is concretized as"@en) InverseObjectProperties(obo:RO_0000058 obo:RO_0000059) ObjectPropertyDomain(obo:RO_0000058 obo:BFO_0000031) ObjectPropertyRange(obo:RO_0000058 obo:BFO_0000020) # Object Property: obo:RO_0000059 (concretizes) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000059 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000059 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000059 "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en) AnnotationAssertion(rdfs:label obo:RO_0000059 "concretizes"@en) ObjectPropertyDomain(obo:RO_0000059 obo:BFO_0000020) ObjectPropertyRange(obo:RO_0000059 obo:BFO_0000031) # Object Property: obo:RO_0000079 (function of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000079 "this catalysis function is a function of this enzyme"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000079 "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000079 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000079 "function_of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000079 "is function of"@en) AnnotationAssertion(rdfs:comment obo:RO_0000079 "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label obo:RO_0000079 "function of"@en) SubObjectPropertyOf(obo:RO_0000079 obo:RO_0000052) InverseObjectProperties(obo:RO_0000079 obo:RO_0000085) ObjectPropertyDomain(obo:RO_0000079 obo:BFO_0000034) # Object Property: obo:RO_0000080 (quality of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000080 "this red color is a quality of this apple"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000080 "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000080 "A quality inheres in its bearer at all times for which the quality exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000080 "is quality of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000080 "quality_of"@en) AnnotationAssertion(rdfs:comment obo:RO_0000080 "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label obo:RO_0000080 "quality of"@en) SubObjectPropertyOf(obo:RO_0000080 obo:RO_0000052) InverseObjectProperties(obo:RO_0000080 obo:RO_0000086) # Object Property: obo:RO_0000081 (role of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000081 "this investigator role is a role of this person"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000081 "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000081 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000081 "is role of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000081 "role_of"@en) AnnotationAssertion(rdfs:comment obo:RO_0000081 "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label obo:RO_0000081 "role of"@en) SubObjectPropertyOf(obo:RO_0000081 obo:RO_0000052) InverseObjectProperties(obo:RO_0000081 obo:RO_0000087) # Object Property: obo:RO_0000085 (has function) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000085 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000085 "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000085 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000085 "has_function"@en) AnnotationAssertion(rdfs:label obo:RO_0000085 "has function"@en) SubObjectPropertyOf(obo:RO_0000085 obo:RO_0000053) ObjectPropertyDomain(obo:RO_0000085 obo:BFO_0000004) ObjectPropertyRange(obo:RO_0000085 obo:BFO_0000034) # Object Property: obo:RO_0000086 (has quality) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000086 "this apple has quality this red color"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000086 "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000086 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000086 "has_quality"@en) AnnotationAssertion(rdfs:label obo:RO_0000086 "has quality"@en) SubObjectPropertyOf(obo:RO_0000086 obo:RO_0000053) ObjectPropertyRange(obo:RO_0000086 obo:BFO_0000019) # Object Property: obo:RO_0000087 (has role) AnnotationAssertion(obo:IAO_0000112 obo:RO_0000087 "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000087 "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0000087 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0000087 "has_role"@en) AnnotationAssertion(rdfs:label obo:RO_0000087 "has role"@en) SubObjectPropertyOf(obo:RO_0000087 obo:RO_0000053) ObjectPropertyDomain(obo:RO_0000087 obo:BFO_0000004) ObjectPropertyRange(obo:RO_0000087 obo:BFO_0000023) # Object Property: obo:RO_0000091 (has disposition) AnnotationAssertion(obo:IAO_0000115 obo:RO_0000091 "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en) AnnotationAssertion(rdfs:label obo:RO_0000091 "has disposition"@en) SubObjectPropertyOf(obo:RO_0000091 obo:RO_0000053) InverseObjectProperties(obo:RO_0000091 obo:RO_0000092) ObjectPropertyDomain(obo:RO_0000091 obo:BFO_0000004) ObjectPropertyRange(obo:RO_0000091 obo:BFO_0000016) # Object Property: obo:RO_0000092 (disposition of) AnnotationAssertion(rdfs:comment obo:RO_0000092 "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label obo:RO_0000092 "disposition of"@en) SubObjectPropertyOf(obo:RO_0000092 obo:RO_0000052) # Object Property: obo:RO_0001000 (derives from) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001000 "this cell derives from this parent cell (cell division)"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001000 "this nucleus derives from this parent nucleus (nuclear division)"@en) AnnotationAssertion(obo:IAO_0000114 obo:RO_0001000 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001000 "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001000 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0001000 "derives_from"@en) AnnotationAssertion(rdfs:label obo:RO_0001000 "derives from"@en) InverseObjectProperties(obo:RO_0001000 obo:RO_0001001) # Object Property: obo:RO_0001001 (derives into) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001001 "this parent cell derives into this cell (cell division)"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001001 "this parent nucleus derives into this nucleus (nuclear division)"@en) AnnotationAssertion(obo:IAO_0000114 obo:RO_0001001 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001001 "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001001 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0001001 "derives_into"@en) AnnotationAssertion(rdfs:label obo:RO_0001001 "derives into"@en) # Object Property: obo:RO_0001015 (location of) AnnotationAssertion(obo:IAO_0000111 obo:RO_0001015 "is location of"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001015 "my head is the location of my brain"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001015 "this cage is the location of this rat"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001015 "a relation between two independent continuants, the location and the target, in which the target is entirely within the location"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001015 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001015 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0001015 "location_of"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0001015 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0001015 "location of"@en) InverseObjectProperties(obo:RO_0001015 obo:RO_0001025) TransitiveObjectProperty(obo:RO_0001015) # Object Property: obo:RO_0001025 (located in) AnnotationAssertion(obo:IAO_0000111 obo:RO_0001025 "located in"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001025 "my brain is located in my head"@en) AnnotationAssertion(obo:IAO_0000112 obo:RO_0001025 "this rat is located in this cage"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001025 "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001025 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001025 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0001025 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0001025 "located_in"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0001025 obo:RO_0001901) AnnotationAssertion(dc:source obo:RO_0001025 "http://www.obofoundry.org/ro/#OBO_REL:located_in") AnnotationAssertion(terms:source obo:RO_0001025 "http://www.obofoundry.org/ro/#OBO_REL:located_in") AnnotationAssertion(rdfs:label obo:RO_0001025 "located in"@en) TransitiveObjectProperty(obo:RO_0001025) ObjectPropertyDomain(Annotation(obo:IAO_0000116 "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.") obo:RO_0001025 obo:BFO_0000004) ObjectPropertyDomain(obo:RO_0001025 ObjectIntersectionOf(obo:BFO_0000004 ObjectComplementOf(obo:BFO_0000006))) ObjectPropertyRange(Annotation(obo:IAO_0000116 "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.") obo:RO_0001025 obo:BFO_0000004) ObjectPropertyRange(obo:RO_0001025 ObjectIntersectionOf(obo:BFO_0000004 ObjectComplementOf(obo:BFO_0000006))) # Object Property: obo:RO_0002000 (2D boundary of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0002000 "the surface of my skin is a 2D boundary of my body"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002000 "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0002000 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts."@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0002000 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002000 "2D_boundary_of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002000 "boundary of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002000 "is 2D boundary of"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002000 "is boundary of"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0002000 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0002000 "2D boundary of"@en) InverseObjectProperties(obo:RO_0002000 obo:RO_0002002) # Object Property: obo:RO_0002002 (has 2D boundary) AnnotationAssertion(obo:IAO_0000112 obo:RO_0002002 "my body has 2D boundary the surface of my skin"@en) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002002 "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity"@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0002002 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts."@en) AnnotationAssertion(obo:IAO_0000116 obo:RO_0002002 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape."@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002002 "has boundary"@en) AnnotationAssertion(obo:IAO_0000118 obo:RO_0002002 "has_2D_boundary"@en) AnnotationAssertion(obo:RO_0001900 obo:RO_0002002 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0002002 "has 2D boundary"@en) ObjectPropertyDomain(obo:RO_0002002 obo:BFO_0000040) ObjectPropertyRange(obo:RO_0002002 obo:BFO_0000141) # Object Property: obo:RO_0002162 (in taxon) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002162 "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.") AnnotationAssertion(obo:IAO_0000412 obo:RO_0002162 obo:ro.owl) AnnotationAssertion(rdfs:label obo:RO_0002162 "in taxon") SubObjectPropertyOf(obo:RO_0002162 obo:RO_0002320) # Object Property: obo:RO_0002211 (regulates) AnnotationAssertion(obo:IAO_0000114 obo:RO_0002211 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002211 "x regulates y if and only if the x is the realization of a function to exert an effect on the frequency, rate or extent of y") AnnotationAssertion(obo:IAO_0000116 obo:RO_0002211 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002211 "Chris Mungall") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002211 "David Hill") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002211 "Tanya Berardini") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002211 ) AnnotationAssertion(obo:IAO_0000119 obo:RO_0002211 "GO") AnnotationAssertion(obo:IAO_0000232 obo:RO_0002211 "Regulation precludes parthood; the regulatory process may not be within the regulated process.") AnnotationAssertion(obo:IAO_0000589 obo:RO_0002211 "regulates (processual)") AnnotationAssertion(obo:IAO_0000600 obo:RO_0002211 "false"^^xsd:boolean) AnnotationAssertion(rdfs:label obo:RO_0002211 "regulates"@en) TransitiveObjectProperty(obo:RO_0002211) ObjectPropertyDomain(obo:RO_0002211 obo:BFO_0000015) ObjectPropertyRange(obo:RO_0002211 obo:BFO_0000015) # Object Property: obo:RO_0002212 (negatively regulates) AnnotationAssertion(obo:IAO_0000114 obo:RO_0002212 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002212 "x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002212 "Chris Mungall"@en) AnnotationAssertion(obo:IAO_0000119 obo:RO_0002212 ) AnnotationAssertion(obo:IAO_0000589 obo:RO_0002212 "negatively regulates (process to process)") AnnotationAssertion(rdfs:label obo:RO_0002212 "negatively regulates"@en) SubObjectPropertyOf(obo:RO_0002212 obo:RO_0002211) # Object Property: obo:RO_0002213 (positively regulates) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002213 "x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002213 "Chris Mungall"@en) AnnotationAssertion(obo:IAO_0000119 obo:RO_0002213 ) AnnotationAssertion(obo:IAO_0000589 obo:RO_0002213 "positively regulates (process to process)") AnnotationAssertion(rdfs:label obo:RO_0002213 "positively regulates"@en) SubObjectPropertyOf(obo:RO_0002213 obo:RO_0002211) # Object Property: obo:RO_0002215 (capable of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0002215 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)") AnnotationAssertion(obo:IAO_0000112 obo:RO_0002215 "osteoclast SubClassOf 'capable of' some 'bone resorption'") AnnotationAssertion(obo:IAO_0000114 obo:RO_0002215 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002215 "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002215 "Chris Mungall") AnnotationAssertion(obo:IAO_0000118 obo:RO_0002215 "has function realized in") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002215 ) AnnotationAssertion(obo:IAO_0000119 obo:RO_0002215 ) AnnotationAssertion(obo:IAO_0000232 obo:RO_0002215 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\".") AnnotationAssertion(obo:IAO_0000424 obo:RO_0002215 "RO_0000053 some (RO_0000054 only ?Y)") AnnotationAssertion(rdfs:label obo:RO_0002215 "capable of"@en) ObjectPropertyDomain(obo:RO_0002215 obo:BFO_0000004) ObjectPropertyRange(obo:RO_0002215 obo:BFO_0000015) # Object Property: obo:RO_0002234 (has output) AnnotationAssertion(obo:IAO_0000114 obo:RO_0002234 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002234 "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.") AnnotationAssertion(obo:IAO_0000117 obo:RO_0002234 "Chris Mungall") AnnotationAssertion(obo:IAO_0000118 obo:RO_0002234 "produces") AnnotationAssertion(rdfs:label obo:RO_0002234 "has output"@en) SubObjectPropertyOf(obo:RO_0002234 obo:RO_0000057) # Object Property: obo:RO_0002297 (results in formation of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0002297 "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.") AnnotationAssertion(obo:IAO_0000112 obo:RO_0002297 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)"@en) AnnotationAssertion(obo:IAO_0000114 obo:RO_0002297 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000117 obo:RO_0002297 "Chris Mungall") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002297 "GOC:mtg_berkeley_2013") AnnotationAssertion(oboInOwl:shorthand obo:RO_0002297 "results_in_formation_of") AnnotationAssertion(rdfs:label obo:RO_0002297 "results in formation of"@en) SubObjectPropertyOf(obo:RO_0002297 obo:IDO_0000660) # Object Property: obo:RO_0002320 (evolutionarily related to) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002320 "A relationship that holds via some environmental process") AnnotationAssertion(obo:IAO_0000412 obo:RO_0002320 obo:ro.owl) AnnotationAssertion(rdfs:label obo:RO_0002320 "evolutionarily related to"@en) # Object Property: obo:RO_0002321 (ecologically related to) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002321 "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)") AnnotationAssertion(obo:IAO_0000412 obo:RO_0002321 obo:ro.owl) AnnotationAssertion(rdfs:label obo:RO_0002321 "ecologically related to"@en) # Object Property: obo:RO_0002350 (member of) AnnotationAssertion(obo:IAO_0000112 obo:RO_0002350 "An organism that is a member of a population of organisms") AnnotationAssertion(obo:IAO_0000115 obo:RO_0002350 "is member of is a mereological relation between a item and a collection.") AnnotationAssertion(obo:IAO_0000118 obo:RO_0002350 "is member of") AnnotationAssertion(obo:IAO_0000118 obo:RO_0002350 "member part of") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002350 "SIO") AnnotationAssertion(obo:RO_0001900 obo:RO_0002350 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0002350 "member of"@en) SubObjectPropertyOf(obo:RO_0002350 obo:BFO_0000050) InverseObjectProperties(obo:RO_0002350 obo:RO_0002351) # Object Property: obo:RO_0002351 (has member) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002351 "has member is a mereological relation between a collection and an item.") AnnotationAssertion(obo:IAO_0000119 obo:RO_0002351 "SIO") AnnotationAssertion(obo:RO_0001900 obo:RO_0002351 obo:RO_0001901) AnnotationAssertion(rdfs:label obo:RO_0002351 "has member"@en) SubObjectPropertyOf(obo:RO_0002351 obo:BFO_0000051) IrreflexiveObjectProperty(obo:RO_0002351) # Object Property: obo:RO_0002454 (has host) AnnotationAssertion(obo:IAO_0000115 obo:RO_0002454 "X 'has host' y if and only if: x is an organism, y is an organism, and x can live on the surface of or within the body of y") AnnotationAssertion(obo:IAO_0000412 obo:RO_0002454 obo:ro.owl) AnnotationAssertion(rdfs:label obo:RO_0002454 "has host") SubObjectPropertyOf(obo:RO_0002454 obo:RO_0002321) # Object Property: obo:RO_0002460 (has vector) AnnotationAssertion(obo:IAO_0000412 obo:RO_0002460 obo:ro.owl) AnnotationAssertion(rdfs:label obo:RO_0002460 "has vector") SubObjectPropertyOf(obo:RO_0002460 obo:RO_0002321) # Object Property: obo:RO_0004096 (DEPRECATED inheres in) AnnotationAssertion(rdfs:comment obo:RO_0004096 "DEPRECATED This relation is similar to but different in important respects to the characteristic-of relation. See comments on that relation for more information.") AnnotationAssertion(rdfs:label obo:RO_0004096 "DEPRECATED inheres in"@en) AnnotationAssertion(owl:deprecated obo:RO_0004096 "true"^^xsd:boolean) # Object Property: obo:RO_0004097 (DEPRECATED bearer of) AnnotationAssertion(rdfs:label obo:RO_0004097 "DEPRECATED bearer of"@en) AnnotationAssertion(owl:deprecated obo:RO_0004097 "true"^^xsd:boolean) ############################ # Classes ############################ # Class: obo:BFO_0000001 (entity) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000001 "entity") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000001 "Entity") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000001 "Julius Caesar"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000001 "Verdi’s Requiem"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000001 "the Second World War"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000001 "your body mass index"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000001 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "per discussion with Barry Smith") Annotation(rdfs:seeAlso ) obo:IAO_0000116 obo:BFO_0000001 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000001 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])"@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000001 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000001 "entity"@en) SubClassOf(obo:BFO_0000001 owl:Thing) # Class: obo:BFO_0000002 (continuant) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000002 "continuant") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000002 "Continuant") AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000002 "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000002 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000116 obo:BFO_0000002 "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000002 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000002 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000002 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000002 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000002 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000002 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000002 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000002 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000002 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000002 "continuant"@en) SubClassOf(obo:BFO_0000002 obo:BFO_0000001) DisjointClasses(obo:BFO_0000002 obo:BFO_0000003) DisjointClasses(obo:BFO_0000002 ObjectSomeValuesFrom(obo:BFO_0000050 obo:BFO_0000003)) # Class: obo:BFO_0000003 (occurrent) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000003 "occurrent") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000003 "Occurrent") AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000003 "An entity that has temporal parts and that happens, unfolds or develops through time."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000003 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000003 "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "per discussion with Barry Smith") obo:IAO_0000116 obo:BFO_0000003 "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000116 obo:BFO_0000003 "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000003 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000003 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000003 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000003 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000003 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000003 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000003 "occurrent"@en) SubClassOf(obo:BFO_0000003 obo:BFO_0000001) DisjointClasses(obo:BFO_0000003 ObjectSomeValuesFrom(obo:BFO_0000050 obo:BFO_0000002)) # Class: obo:BFO_0000004 (independent continuant) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000004 "ic") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000004 "IndependentContinuant") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "a chair"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "a heart"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "a leg"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "a molecule"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "a spatial region"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "an atom"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "an orchestra."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "an organism"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "the bottom right portion of a human torso"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000004 "the interior of your mouth"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000004 "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000004 "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000004 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000004 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000004 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000004 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000004 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] ") AnnotationAssertion(rdfs:comment obo:BFO_0000004 "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000004 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000004 "independent continuant"@en) SubClassOf(obo:BFO_0000004 obo:BFO_0000002) DisjointClasses(obo:BFO_0000004 obo:BFO_0000020) DisjointClasses(obo:BFO_0000004 obo:BFO_0000031) # Class: obo:BFO_0000005 (obsolete dependent continuant) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000005 "A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities."@en) AnnotationAssertion(rdfs:label obo:BFO_0000005 "obsolete dependent continuant"@en) AnnotationAssertion(owl:deprecated obo:BFO_0000005 "true"^^xsd:boolean) SubClassOf(obo:BFO_0000005 oboInOwl:ObsoleteClass) # Class: obo:BFO_0000006 (spatial region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000006 "s-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000006 "SpatialRegion") AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000006 "BFO 2 Reference: Spatial regions do not participate in processes."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "per discussion with Barry Smith") obo:IAO_0000116 obo:BFO_0000006 "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000006 "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000006 "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000006 "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000006 "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000006 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000006 "spatial region"@en) SubClassOf(obo:BFO_0000006 obo:BFO_0000141) DisjointClasses(obo:BFO_0000006 obo:BFO_0000029) DisjointClasses(obo:BFO_0000006 obo:BFO_0000140) # Class: obo:BFO_0000008 (temporal region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000008 "t-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000008 "TemporalRegion") AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "per discussion with Barry Smith") obo:IAO_0000116 obo:BFO_0000008 "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000008 "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000008 "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000008 "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000008 "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000008 "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000008 "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000008 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000008 "temporal region"@en) SubClassOf(obo:BFO_0000008 obo:BFO_0000003) DisjointClasses(obo:BFO_0000008 obo:BFO_0000011) DisjointClasses(obo:BFO_0000008 obo:BFO_0000015) DisjointClasses(obo:BFO_0000008 obo:BFO_0000035) # Class: obo:BFO_0000009 (two-dimensional spatial region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000009 "2d-s-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000009 "TwoDimensionalSpatialRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000009 "an infinitely thin plane in space."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000009 "the surface of a sphere-shaped part of space"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000009 "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000009 "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000009 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000009 "two-dimensional spatial region"@en) SubClassOf(obo:BFO_0000009 obo:BFO_0000006) DisjointClasses(obo:BFO_0000009 obo:BFO_0000028) # Class: obo:BFO_0000011 (spatiotemporal region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000011 "st-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000011 "SpatiotemporalRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000011 "the spatiotemporal region occupied by a human life"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000011 "the spatiotemporal region occupied by a process of cellular meiosis."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000011 "the spatiotemporal region occupied by the development of a cancer tumor"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000011 "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000011 "All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000011 "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000011 "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])"@en) AnnotationAssertion(obo:IAO_0000601 obo:BFO_0000011 "Every spatiotemporal region occupies_spatiotemporal_region itself."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000011 "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000011 "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000011 "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000011 "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000011 "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000011 "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000011 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000011 "spatiotemporal region"@en) SubClassOf(obo:BFO_0000011 obo:BFO_0000003) # Class: obo:BFO_0000015 (process) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000015 "process") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000015 "Process") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "a process of cell-division, \\ a beating of the heart"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "a process of meiosis"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "a process of sleeping"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "the course of a disease"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "the flight of a bird"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "the life of an organism"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000015 "your process of aging."@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000015 "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000015 "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000015 "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000015 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ") AnnotationAssertion(rdfs:comment obo:BFO_0000015 "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000015 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000015 "process"@en) SubClassOf(obo:BFO_0000015 obo:BFO_0000003) # Class: obo:BFO_0000016 (disposition) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000016 "disposition") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000016 "Disposition") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000016 "an atom of element X has the disposition to decay to an atom of element Y"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000016 "certain people have a predisposition to colon cancer"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000016 "children are innately disposed to categorize objects in certain ways."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000016 "the cell wall is disposed to filter chemicals in endocytosis and exocytosis"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000016 "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000016 "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000016 "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000016 "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000016 "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000016 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000016 "disposition"@en) SubClassOf(obo:BFO_0000016 obo:BFO_0000017) DisjointClasses(obo:BFO_0000016 obo:BFO_0000023) # Class: obo:BFO_0000017 (realizable entity) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000017 "realizable") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000017 "RealizableEntity") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000017 "the disposition of this piece of metal to conduct electricity."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000017 "the disposition of your blood to coagulate"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000017 "the function of your reproductive organs"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000017 "the role of being a doctor"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000017 "the role of this boundary to delineate where Utah and Colorado meet"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000017 "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000017 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000017 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000017 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000017 "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000017 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000017 "realizable entity"@en) SubClassOf(obo:BFO_0000017 obo:BFO_0000020) DisjointClasses(obo:BFO_0000017 obo:BFO_0000019) # Class: obo:BFO_0000018 (zero-dimensional spatial region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000018 "0d-s-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000018 "ZeroDimensionalSpatialRegion") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000018 "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000018 "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000018 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000018 "zero-dimensional spatial region"@en) SubClassOf(obo:BFO_0000018 obo:BFO_0000006) DisjointClasses(obo:BFO_0000018 obo:BFO_0000028) # Class: obo:BFO_0000019 (quality) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000019 "quality") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000019 "Quality") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the ambient temperature of this portion of air"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the color of a tomato"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the length of the circumference of your waist"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the mass of this piece of gold."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the shape of your nose"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000019 "the shape of your nostril"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000019 "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000019 "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000019 "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000019 "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000019 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000019 "quality"@en) SubClassOf(obo:BFO_0000019 obo:BFO_0000020) # Class: obo:BFO_0000020 (specifically dependent continuant) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000020 "sdc") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000020 "SpecificallyDependentContinuant") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "of one-sided specifically dependent continuants: the mass of this tomato"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the disposition of this fish to decay"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the function of this heart: to pump blood"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the mutual dependence of proton donors and acceptors in chemical reactions [79"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the pink color of a medium rare piece of grilled filet mignon at its center"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the role of being a doctor"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the shape of this hole."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000020 "the smell of this portion of mozzarella"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000020 "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000020 "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000020 "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "per discussion with Barry Smith") obo:IAO_0000116 obo:BFO_0000020 "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000020 "(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000020 "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ") AnnotationAssertion(rdfs:comment obo:BFO_0000020 "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000020 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000020 "specifically dependent continuant"@en) SubClassOf(obo:BFO_0000020 obo:BFO_0000002) DisjointClasses(obo:BFO_0000020 obo:BFO_0000031) # Class: obo:BFO_0000023 (role) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000023 "role") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000023 "Role") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the priest role"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the role of a boundary to demarcate two neighboring administrative territories"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the role of a building in serving as a military target"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the role of a stone in marking a property boundary"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the role of subject in a clinical trial"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000023 "the student role"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000023 "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000023 "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000023 "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000023 "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000023 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000023 "role"@en) SubClassOf(obo:BFO_0000023 obo:BFO_0000017) # Class: obo:BFO_0000024 (fiat object part) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000024 "fiat-object") AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000024 "fiat-object-part") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000024 "FiatObjectPart") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the FMA:regional parts of an intact human body."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the Western hemisphere of the Earth"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the division of the brain into regions"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the division of the planet into hemispheres"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the dorsal and ventral surfaces of the body"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000024 "the upper and lower lobes of the left lung"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000024 "BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000024 "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000024 "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000024 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000024 "fiat object"@en) AnnotationAssertion(rdfs:label obo:BFO_0000024 "fiat object part"@en) SubClassOf(obo:BFO_0000024 obo:BFO_0000040) # Class: obo:BFO_0000026 (one-dimensional spatial region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000026 "1d-s-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000026 "OneDimensionalSpatialRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000026 "an edge of a cube-shaped portion of space."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000026 "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000026 "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000026 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000026 "one-dimensional spatial region"@en) SubClassOf(obo:BFO_0000026 obo:BFO_0000006) DisjointClasses(obo:BFO_0000026 obo:BFO_0000028) # Class: obo:BFO_0000027 (object aggregate) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000027 "object-aggregate") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000027 "ObjectAggregate") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "a collection of cells in a blood biobank."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "a swarm of bees is an aggregate of members who are linked together through natural bonds"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "a symphony orchestra"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "defined by fiat: the aggregate of members of an organization"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "defined through physical attachment: the aggregate of atoms in a lump of granite"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "defined via attributive delimitations such as: the patients in this hospital"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "the aggregate of bearings in a constant velocity axle joint"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "the aggregate of blood cells in your body"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "the nitrogen atoms in the atmosphere"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "the restaurants in Palo Alto"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000027 "your collection of Meissen ceramic plates."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000116 obo:BFO_0000027 "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000116 obo:BFO_0000027 "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects ") AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000027 "BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee)."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000119 obo:BFO_0000027 "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000027 "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000027 "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000027 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000027 "object aggregate"@en) SubClassOf(obo:BFO_0000027 obo:BFO_0000040) # Class: obo:BFO_0000028 (three-dimensional spatial region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000028 "3d-s-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000028 "ThreeDimensionalSpatialRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000028 "a cube-shaped region of space"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000028 "a sphere-shaped region of space,"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000028 "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000028 "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000028 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000028 "three-dimensional spatial region"@en) SubClassOf(obo:BFO_0000028 obo:BFO_0000006) # Class: obo:BFO_0000029 (site) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000029 "site") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000029 "Site") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "Manhattan Canyon)"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "a hole in the interior of a portion of cheese"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "a rabbit hole"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "an air traffic control region defined in the airspace above an airport"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the Grand Canyon"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the Piazza San Marco"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the cockpit of an aircraft"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the hold of a ship"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the interior of a kangaroo pouch"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the interior of the trunk of your car"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the interior of your bedroom"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the interior of your office"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the interior of your refrigerator"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "the lumen of your gut"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000029 "your left nostril (a fiat part – the opening – of your left nasal cavity)"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000029 "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000029 "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000029 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000029 "site"@en) SubClassOf(obo:BFO_0000029 obo:BFO_0000141) # Class: obo:BFO_0000030 (object) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000030 "object") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000030 "Object") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "atom"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "cell"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "cells and organisms"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "engineered artifacts"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "grain of sand"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "molecule"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "organelle"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "organism"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "planet"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "solid portions of matter"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000030 "star"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000030 "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000030 "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000030 "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000030 "BFO 2 Reference: an object is a maximal causally unified material entity"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000030 "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000030 "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])"@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000030 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000030 "object"@en) SubClassOf(obo:BFO_0000030 obo:BFO_0000040) # Class: obo:BFO_0000031 (generically dependent continuant) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000031 "gdc") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000031 "GenericallyDependentContinuant") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000031 "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000031 "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000031 "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000031 "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000031 "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000031 "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ") AnnotationAssertion(rdfs:comment obo:BFO_0000031 "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000031 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000031 "generically dependent continuant"@en) SubClassOf(obo:BFO_0000031 obo:BFO_0000002) # Class: obo:BFO_0000034 (function) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000034 "function") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000034 "Function") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000034 "the function of a hammer to drive in nails"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000034 "the function of a heart pacemaker to regulate the beating of a heart through electricity"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000034 "the function of amylase in saliva to break down starch into sugar"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000034 "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000034 "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000034 "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000034 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000034 "function"@en) SubClassOf(obo:BFO_0000034 obo:BFO_0000016) # Class: obo:BFO_0000035 (process boundary) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000035 "p-boundary") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000035 "ProcessBoundary") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000035 "the boundary between the 2nd and 3rd year of your life."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000035 "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000035 "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000035 "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000035 "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000035 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000035 "process boundary"@en) SubClassOf(obo:BFO_0000035 obo:BFO_0000003) # Class: obo:BFO_0000038 (one-dimensional temporal region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000038 "1d-t-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000038 "OneDimensionalTemporalRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000038 "the temporal region during which a process occurs."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000038 "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000038 "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000038 "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000038 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000038 "one-dimensional temporal region"@en) SubClassOf(obo:BFO_0000038 obo:BFO_0000008) DisjointClasses(obo:BFO_0000038 obo:BFO_0000148) # Class: obo:BFO_0000040 (material entity) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000040 "material") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000040 "MaterialEntity") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a flame"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a forest fire"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a human being"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a hurricane"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a photon"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a puff of smoke"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a sea wave"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "a tornado"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "an aggregate of human beings."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "an energy wave"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "an epidemic"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000040 "the undetached arm of a human being"@en) AnnotationAssertion(obo:IAO_0000115 obo:BFO_0000040 "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000040 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000040 "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000040 "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000040 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000040 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000601 obo:BFO_0000040 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000040 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000040 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000040 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000040 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000040 "material entity"@en) SubClassOf(obo:BFO_0000040 obo:BFO_0000004) DisjointClasses(obo:BFO_0000040 obo:BFO_0000141) # Class: obo:BFO_0000140 (continuant fiat boundary) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000140 "cf-boundary") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000140 "ContinuantFiatBoundary") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000140 "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])"@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000140 "BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions."@en) AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000140 "BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000116 obo:BFO_0000140 "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions."@en) AnnotationAssertion(obo:IAO_0000601 obo:BFO_0000140 "Every continuant fiat boundary is located at some spatial region at every time at which it exists"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000140 "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000140 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000140 "continuant fiat boundary"@en) SubClassOf(obo:BFO_0000140 obo:BFO_0000141) # Class: obo:BFO_0000141 (immaterial entity) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000141 "immaterial") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000141 "ImmaterialEntity") AnnotationAssertion(obo:IAO_0000116 obo:BFO_0000141 "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10"@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000141 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000141 "immaterial entity"@en) SubClassOf(obo:BFO_0000141 obo:BFO_0000004) # Class: obo:BFO_0000142 (one-dimensional continuant fiat boundary) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000142 "1d-cf-boundary") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000142 "OneDimensionalContinuantFiatBoundary") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000142 "The Equator"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000142 "all geopolitical boundaries"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000142 "all lines of latitude and longitude"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000142 "the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000142 "the median sulcus of your tongue"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000142 "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000142 "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000142 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000142 "one-dimensional continuant fiat boundary"@en) SubClassOf(obo:BFO_0000142 obo:BFO_0000140) DisjointClasses(obo:BFO_0000142 obo:BFO_0000146) DisjointClasses(obo:BFO_0000142 obo:BFO_0000147) # Class: obo:BFO_0000144 (process profile) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000144 "process-profile") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000144 "ProcessProfile") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000144 "On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000144 "One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000144 "The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000144 "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000144 "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000144 "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] ") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000144 "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000144 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000144 "process profile"@en) SubClassOf(obo:BFO_0000144 obo:BFO_0000015) DisjointClasses(obo:BFO_0000144 obo:BFO_0000182) # Class: obo:BFO_0000145 (relational quality) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000145 "r-quality") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000145 "RelationalQuality") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000145 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000145 "a marriage bond, an instance of love, an obligation between one person and another."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000145 "a marriage bond, an instance of requited love, an obligation between one person and another."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000115 obo:BFO_0000145 "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000145 "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000145 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000145 "relational quality"@en) SubClassOf(obo:BFO_0000145 obo:BFO_0000019) # Class: obo:BFO_0000146 (two-dimensional continuant fiat boundary) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000146 "2d-cf-boundary") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000146 "TwoDimensionalContinuantFiatBoundary") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000146 "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000146 "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000146 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000146 "two-dimensional continuant fiat boundary"@en) SubClassOf(obo:BFO_0000146 obo:BFO_0000140) # Class: obo:BFO_0000147 (zero-dimensional continuant fiat boundary) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000147 "0d-cf-boundary") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000147 "ZeroDimensionalContinuantFiatBoundary") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000147 "the geographic North Pole"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000147 "the point of origin of some spatial coordinate system."@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000147 "the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) Annotation(rdfs:comment "requested by Melanie Courtot") Annotation(rdfs:seeAlso ) obo:IAO_0000116 obo:BFO_0000147 "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000147 "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000147 "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000147 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000147 "zero-dimensional continuant fiat boundary"@en) SubClassOf(obo:BFO_0000147 obo:BFO_0000140) # Class: obo:BFO_0000148 (zero-dimensional temporal region) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000148 "0d-t-region") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000148 "ZeroDimensionalTemporalRegion") AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000148 "a temporal region that is occupied by a process boundary"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000148 "right now"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000148 "the moment at which a child is born"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000148 "the moment at which a finger is detached in an industrial accident"@en) AnnotationAssertion(obo:IAO_0000112 obo:BFO_0000148 "the moment of death."@en) AnnotationAssertion(obo:IAO_0000118 obo:BFO_0000148 "temporal instant."@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000148 "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000602 obo:BFO_0000148 "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] ") AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000148 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000148 "zero-dimensional temporal region"@en) SubClassOf(obo:BFO_0000148 obo:BFO_0000008) # Class: obo:BFO_0000182 (history) AnnotationAssertion(obo:BFO_0000179 obo:BFO_0000182 "history") AnnotationAssertion(obo:BFO_0000180 obo:BFO_0000182 "History") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000182 "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])"@en) AnnotationAssertion(rdfs:isDefinedBy obo:BFO_0000182 obo:bfo.owl) AnnotationAssertion(rdfs:label obo:BFO_0000182 "history"@en) SubClassOf(obo:BFO_0000182 obo:BFO_0000015) # Class: obo:BTO_0000597 (hepatopancreas) AnnotationAssertion(obo:IAO_0000115 obo:BTO_0000597 "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage.") AnnotationAssertion(obo:IAO_0000412 obo:BTO_0000597 obo:bto.owl) AnnotationAssertion(rdfs:label obo:BTO_0000597 "hepatopancreas") SubClassOf(obo:BTO_0000597 obo:UBERON_0000465) # Class: obo:BTO_0001117 (proboscis) AnnotationAssertion(obo:IAO_0000115 obo:BTO_0001117 "1: The trunk of an elephant; also: any long flexible snout. 2: Any of various elongated or extensible tubular processes as the sucking organ of a butterfly of the oral region of an invertebrate.") AnnotationAssertion(obo:IAO_0000412 obo:BTO_0001117 obo:bto.owl) AnnotationAssertion(rdfs:label obo:BTO_0001117 "proboscis") SubClassOf(obo:BTO_0001117 obo:UBERON_0000465) # Class: obo:CARO_0000000 (anatomical entity) AnnotationAssertion(obo:IAO_0000115 obo:CARO_0000000 "A part of a multicellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a multicellular organism with granularity above the level of a protein complex.") AnnotationAssertion(obo:IAO_0000412 obo:CARO_0000000 obo:caro.owl) AnnotationAssertion(rdfs:label obo:CARO_0000000 "anatomical entity") SubClassOf(obo:CARO_0000000 obo:BFO_0000040) DisjointClasses(obo:CARO_0000000 obo:IDO_0000504) DisjointClasses(obo:CARO_0000000 obo:IDO_0000528) DisjointClasses(obo:CARO_0000000 obo:IDO_0000544) DisjointClasses(obo:CARO_0000000 obo:IDO_0000555) DisjointClasses(obo:CARO_0000000 obo:IDO_0000556) DisjointClasses(obo:CARO_0000000 obo:IDO_0000558) DisjointClasses(obo:CARO_0000000 obo:IDO_0000559) DisjointClasses(obo:CARO_0000000 obo:IDO_0000560) DisjointClasses(obo:CARO_0000000 obo:IDO_0000561) DisjointClasses(obo:CARO_0000000 obo:IDO_0000562) DisjointClasses(obo:CARO_0000000 obo:IDO_0000586) DisjointClasses(obo:CARO_0000000 obo:IDO_0000617) # Class: obo:CHEBI_23367 (molecular entity) AnnotationAssertion(obo:IAO_0000115 obo:CHEBI_23367 "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.") AnnotationAssertion(obo:IAO_0000412 obo:CHEBI_23367 obo:chebi.owl) AnnotationAssertion(rdfs:label obo:CHEBI_23367 "molecular entity") SubClassOf(obo:CHEBI_23367 obo:BFO_0000040) # Class: obo:CHEBI_23888 (drug) AnnotationAssertion(obo:IAO_0000115 obo:CHEBI_23888 "Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.") AnnotationAssertion(obo:IAO_0000412 obo:CHEBI_23888 obo:chiro.owl) AnnotationAssertion(rdfs:label obo:CHEBI_23888 "drug") SubClassOf(obo:CHEBI_23888 obo:BFO_0000040) # Class: obo:CHEBI_3638 (chloroquine) AnnotationAssertion(obo:IAO_0000115 obo:CHEBI_3638 "An aminoquinoline that is quinoline which is substituted at position 4 by a [5-(diethylamino)pentan-2-yl]amino group at at position 7 by chlorine. It is used for the treatment of malaria, hepatic amoebiasis, lupus erythematosus, light-sensitive skin eruptions, and rheumatoid arthritis.") AnnotationAssertion(obo:IAO_0000412 obo:CHEBI_3638 obo:chebi.owl) AnnotationAssertion(chebi:charge obo:CHEBI_3638 "0") AnnotationAssertion(chebi:formula obo:CHEBI_3638 "C18H26ClN3") AnnotationAssertion(chebi:inchi obo:CHEBI_3638 "InChI=1S/C18H26ClN3/c1-4-22(5-2)12-6-7-14(3)21-17-10-11-20-18-13-15(19)8-9-16(17)18/h8-11,13-14H,4-7,12H2,1-3H3,(H,20,21)") AnnotationAssertion(chebi:inchikey obo:CHEBI_3638 "WHTVZRBIWZFKQO-UHFFFAOYSA-N") AnnotationAssertion(chebi:mass obo:CHEBI_3638 "319.87200") AnnotationAssertion(chebi:monoisotopicmass obo:CHEBI_3638 "319.18153") AnnotationAssertion(chebi:smiles obo:CHEBI_3638 "CCN(CC)CCCC(C)Nc1ccnc2cc(Cl)ccc12") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Beilstein:482809") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "CAS:54-05-7") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "DrugBank:DB00608") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Drug_Central:607") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Gmelin:781126") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "HMDB:HMDB0014746") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "KEGG:C07625") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "KEGG:D02366") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "LINCS:LSM-1901") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PDBeChem:CLQ") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:11198399") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:17594118") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:18052874") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:19426658") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23288916") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23580861") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23635029") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23644906") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23706562") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23852712") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:23891850") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "PMID:25285162") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Patent:DE683692") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Patent:US2233970") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Reaxys:482809") AnnotationAssertion(oboInOwl:hasDbXref obo:CHEBI_3638 "Wikipedia:Chloroquine") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CHEBI_3638 "Chloroquine") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CHEBI_3638 "N(4)-(7-chloroquinolin-4-yl)-N(1),N(1)-diethylpentane-1,4-diamine") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CHEBI_3638 "chebi_ontology") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Aralen") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Artrichin") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Bemaphate") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Capquin") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Chlorochin") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "N(4)-(7-chloro-4-quinolinyl)-N(1),N(1)-diethyl-1,4-pentanediamine") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Nivaquine B") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Resoquine") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Reumachlor") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "Sanoquin") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "chloroquine") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "chloroquinum") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CHEBI_3638 "cloroquina") AnnotationAssertion(oboInOwl:id obo:CHEBI_3638 "CHEBI:3638") AnnotationAssertion(oboInOwl:inSubset obo:CHEBI_3638 ) AnnotationAssertion(rdfs:label obo:CHEBI_3638 "chloroquine") SubClassOf(obo:CHEBI_3638 obo:CHEBI_23888) SubClassOf(obo:CHEBI_3638 obo:IDO_0000561) SubClassOf(obo:CHEBI_3638 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000013)) # Class: obo:CL_0000000 (cell) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000000 "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.") AnnotationAssertion(obo:IAO_0000412 obo:CL_0000000 obo:cl.owl) AnnotationAssertion(rdfs:label obo:CL_0000000 "cell") AnnotationAssertion(rdfs:label obo:CL_0000000 "cell"@en) SubClassOf(obo:CL_0000000 obo:CARO_0000000) SubClassOf(obo:CL_0000000 obo:UBERON_0000465) # Class: obo:CL_0000182 (hepatocyte) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000182 "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated.") AnnotationAssertion(obo:IAO_0000412 obo:CL_0000182 obo:cl.owl) AnnotationAssertion(rdfs:label obo:CL_0000182 "hepatocyte") SubClassOf(obo:CL_0000182 obo:CL_0000000) # Class: obo:CL_0000232 (erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000232 "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.") AnnotationAssertion(obo:IAO_0000412 obo:CL_0000232 obo:cl.owl) AnnotationAssertion(rdfs:label obo:CL_0000232 "erythrocyte") SubClassOf(obo:CL_0000232 obo:CL_0000000) # Class: obo:CL_0000235 (macrophage) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000235 "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.") AnnotationAssertion(obo:IAO_0000412 obo:CL_0000235 obo:cl.owl) AnnotationAssertion(rdfs:label obo:CL_0000235 "macrophage") SubClassOf(obo:CL_0000235 obo:CL_0000000) # Class: obo:CL_0000738 (leukocyte) AnnotationAssertion(obo:IAO_0000115 obo:CL_0000738 "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.") AnnotationAssertion(obo:IAO_0000412 obo:CL_0000738 obo:cl.owl) AnnotationAssertion(rdfs:label obo:CL_0000738 "leukocyte") SubClassOf(obo:CL_0000738 obo:CL_0000000) # Class: obo:DOID_0050117 (disease by infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:DOID_0050117 "A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.") AnnotationAssertion(obo:IAO_0000412 obo:DOID_0050117 obo:doid.owl) AnnotationAssertion(obo:OBI_9991118 obo:DOID_0050117 "infectious disease") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:10115") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:11078") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:1304") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:1321") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:2040") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:2288") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:3099") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:4120") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:4620") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:5256") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:945") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:95") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:9532") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_0050117 "DOID:9696") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050117 "ICD9CM:079.0") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0050117 "UMLS_CUI:C0001485") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0050117 "infectious disease"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0050117 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_0050117 "DOID:0050117") AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050117 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050117 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050117 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050117 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_0050117 ) AnnotationAssertion(rdfs:comment obo:DOID_0050117 "DO:wk") AnnotationAssertion(rdfs:label obo:DOID_0050117 "disease by infectious agent") AnnotationAssertion(owl:deprecated obo:DOID_0050117 "Deprecated for MONGO equivalent.") SubClassOf(obo:DOID_0050117 obo:DOID_4) # Class: obo:DOID_1398 (parasitic infectious disease) AnnotationAssertion(obo:IAO_0000115 obo:DOID_1398 "A disease by infectious agent that is carried out by a parasite which by definition is a pathogen that simultaneously injures and derives sustenance from its host.") AnnotationAssertion(obo:IAO_0000412 obo:DOID_1398 obo:doid.owl) AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:11681") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:13509") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:1396") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:1494") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:2114") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:2293") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:2922") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:3564") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:4191") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:886") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:948") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:9639") AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_1398 "DOID:9644") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1398 "ICD10CM:H44.12") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1398 "ICD9CM:360.13") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1398 "NCI:C34587") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1398 "SNOMEDCT_US_2023_03_01:57100005") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_1398 "UMLS_CUI:C0014238") AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_1398 "Ectoparasitic disease"@en) AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_1398 "parasitemia"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_1398 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_1398 "DOID:1398") AnnotationAssertion(oboInOwl:inSubset obo:DOID_1398 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_1398 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_1398 ) AnnotationAssertion(rdfs:label obo:DOID_1398 "parasitic infectious disease") SubClassOf(obo:DOID_1398 obo:OGMS_0000031) # Class: obo:DOID_4 (disease) AnnotationAssertion(obo:IAO_0000115 obo:DOID_4 "A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.") AnnotationAssertion(obo:IAO_0000412 obo:DOID_4 obo:doid.owl) AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4 "MESH:D004194") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4 "NCI:C2991") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4 "SNOMEDCT_US_2023_03_01:64572001") AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_4 "UMLS_CUI:C0012634") AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_4 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:DOID_4 "DOID:4") AnnotationAssertion(oboInOwl:inSubset obo:DOID_4 ) AnnotationAssertion(oboInOwl:inSubset obo:DOID_4 ) AnnotationAssertion(rdfs:label obo:DOID_4 "disease") AnnotationAssertion(owl:deprecated obo:DOID_4 "Deprecated for OMGS equivalent.") SubClassOf(obo:DOID_4 oboInOwl:ObsoleteClass) # Class: obo:GO_0000003 (reproduction) AnnotationAssertion(obo:IAO_0000115 obo:GO_0000003 "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0000003 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0000003 "reproduction") SubClassOf(obo:GO_0000003 obo:GO_0008150) # Class: obo:GO_0002250 (adaptive immune response) AnnotationAssertion(obo:IAO_0000115 obo:GO_0002250 "An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).") AnnotationAssertion(obo:IAO_0000412 obo:GO_0002250 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0002250 "adaptive immune response") SubClassOf(obo:GO_0002250 obo:GO_0006955) # Class: obo:GO_0002443 (leukocyte mediated immunity) AnnotationAssertion(obo:IAO_0000115 obo:GO_0002443 "Any process involved in the carrying out of an immune response by a leukocyte.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0002443 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0002443 "leukocyte mediated immunity") SubClassOf(obo:GO_0002443 obo:GO_0006955) # Class: obo:GO_0006955 (immune response) AnnotationAssertion(obo:IAO_0000115 obo:GO_0006955 "Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0006955 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0006955 "immune response") SubClassOf(obo:GO_0006955 obo:GO_0008150) # Class: obo:GO_0006959 (humoral immune response) AnnotationAssertion(obo:IAO_0000115 obo:GO_0006959 "An immune response mediated through a body fluid.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0006959 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0006959 "humoral immune response") SubClassOf(obo:GO_0006959 obo:GO_0006955) # Class: obo:GO_0008150 (biological_process) AnnotationAssertion(obo:IAO_0000115 obo:GO_0008150 "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") AnnotationAssertion(obo:IAO_0000115 obo:GO_0008150 "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0008150 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0008150 "biological_process") SubClassOf(obo:GO_0008150 obo:BFO_0000015) # Class: obo:GO_0019814 (immunoglobulin complex) AnnotationAssertion(obo:IAO_0000115 obo:GO_0019814 "A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0019814 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0019814 "immunoglobulin complex") SubClassOf(obo:GO_0019814 obo:GO_0032991) # Class: obo:GO_0019815 (B cell receptor complex) AnnotationAssertion(obo:IAO_0000115 obo:GO_0019815 "An immunoglobulin complex that is present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0019815 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0019815 "B cell receptor complex") SubClassOf(obo:GO_0019815 obo:GO_0032991) # Class: obo:GO_0032502 (developmental process) AnnotationAssertion(obo:IAO_0000115 obo:GO_0032502 "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0032502 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0032502 "developmental process") SubClassOf(obo:GO_0032502 obo:GO_0008150) # Class: obo:GO_0032991 (macromolecular complex) AnnotationAssertion(obo:IAO_0000115 obo:GO_0032991 "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0032991 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0032991 "macromolecular complex") SubClassOf(obo:GO_0032991 obo:BFO_0000040) # Class: obo:GO_0040007 (growth) AnnotationAssertion(obo:IAO_0000115 obo:GO_0040007 "The increase in size or mass of an entire organism, a part of an organism or a cell.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0040007 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0040007 "growth") SubClassOf(obo:GO_0040007 obo:GO_0008150) # Class: obo:GO_0042101 (T cell receptor complex) AnnotationAssertion(obo:IAO_0000115 obo:GO_0042101 "A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0042101 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0042101 "T cell receptor complex") SubClassOf(obo:GO_0042101 obo:GO_0032991) # Class: obo:GO_0043093 (FtsZ-dependent cytokinesis) AnnotationAssertion(obo:IAO_0000115 obo:GO_0043093 "A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0043093 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0043093 "FtsZ-dependent cytokinesis") SubClassOf(obo:GO_0043093 obo:GO_0000003) # Class: obo:GO_0044403 (symbiosis, encompassing mutualism through parasitism) AnnotationAssertion(obo:IAO_0000115 obo:GO_0044403 "An interaction between two organisms living together in more or less intimate association. Microscopic symbionts are often referred to as endosymbionts. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0044403 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0044403 "symbiosis, encompassing mutualism through parasitism") SubClassOf(obo:GO_0044403 obo:GO_0051704) # Class: obo:GO_0044406 (adhesion of symbiont to host) AnnotationAssertion(obo:IAO_0000115 obo:GO_0044406 "The attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic interaction.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0044406 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0044406 "adhesion of symbiont to host") SubClassOf(obo:GO_0044406 obo:GO_0008150) # Class: obo:GO_0044409 (entry into host) AnnotationAssertion(obo:IAO_0000115 obo:GO_0044409 "Penetration by an organism into the body, tissues, or cells of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0044409 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0044409 "entry into host") SubClassOf(obo:GO_0044409 obo:GO_0051704) # Class: obo:GO_0044411 (entry into host through host barriers) AnnotationAssertion(obo:IAO_0000115 obo:GO_0044411 "Penetration by an organism into its host organism via active breaching of the physical barriers of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0044411 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0044411 "entry into host through host barriers") SubClassOf(obo:GO_0044411 obo:GO_0044409) # Class: obo:GO_0045087 (innate immune response) AnnotationAssertion(obo:IAO_0000115 obo:GO_0045087 "Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0045087 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0045087 "innate immune response") SubClassOf(obo:GO_0045087 obo:GO_0006955) # Class: obo:GO_0048525 (negative regulation of viral process) AnnotationAssertion(obo:IAO_0000115 obo:GO_0048525 "Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0048525 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0048525 "negative regulation of viral process") SubClassOf(obo:GO_0048525 obo:GO_0065007) # Class: obo:GO_0050777 (negative regulation of immune response) AnnotationAssertion(obo:IAO_0000115 obo:GO_0050777 "Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0050777 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0050777 "negative regulation of immune response") SubClassOf(obo:GO_0050777 obo:GO_0065007) # Class: obo:GO_0051093 (negative regulation of developmental process) AnnotationAssertion(obo:IAO_0000115 obo:GO_0051093 "Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).") AnnotationAssertion(obo:IAO_0000412 obo:GO_0051093 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0051093 "negative regulation of developmental process") SubClassOf(obo:GO_0051093 obo:GO_0065007) # Class: obo:GO_0051234 (establishment of localization) AnnotationAssertion(obo:IAO_0000115 obo:GO_0051234 "Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0051234 obo:go.owl) AnnotationAssertion(obo:IAO_0000412 obo:GO_0051234 "Gene Ontology: http://purl.obolibrary.org/obo/go.owl") AnnotationAssertion(rdfs:label obo:GO_0051234 "establishment of localization") SubClassOf(obo:GO_0051234 obo:GO_0008150) # Class: obo:GO_0051301 (cell division) AnnotationAssertion(obo:IAO_0000115 obo:GO_0051301 "The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0051301 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0051301 "cell division") SubClassOf(obo:GO_0051301 obo:GO_0008150) # Class: obo:GO_0051704 (multi-organism process) AnnotationAssertion(obo:IAO_0000115 obo:GO_0051704 "A biological process which involves another organism of the same or different species.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0051704 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0051704 "multi-organism process") SubClassOf(obo:GO_0051704 obo:GO_0008150) # Class: obo:GO_0065007 (biological regulation) AnnotationAssertion(obo:IAO_0000115 obo:GO_0065007 "Any process that modulates a measurable attribute of any biological process, quality or function.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0065007 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0065007 "biological regulation") SubClassOf(obo:GO_0065007 obo:BFO_0000015) # Class: obo:GO_0085030 (mutualism) AnnotationAssertion(obo:IAO_0000115 obo:GO_0085030 "An interaction between two organisms living together in more or less intimate association in a relationship in which both organisms benefit from each other.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0085030 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0085030 "mutualism") SubClassOf(obo:GO_0085030 obo:GO_0044403) # Class: obo:GO_0085031 (commensalism) AnnotationAssertion(obo:IAO_0000115 obo:GO_0085031 "An interaction between two organisms living together in more or less intimate association in a relationship in which one benefits and the other is unaffected.") AnnotationAssertion(obo:IAO_0000412 obo:GO_0085031 obo:go.owl) AnnotationAssertion(rdfs:label obo:GO_0085031 "commensalism") SubClassOf(obo:GO_0085031 obo:GO_0044403) # Class: obo:IAO_0000027 (data item) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000027 "data item"@en) AnnotationAssertion(rdfs:label obo:IAO_0000027 "data item"@en) SubClassOf(obo:IAO_0000027 obo:IAO_0000030) # Class: obo:IAO_0000030 (information content entity) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000030 "information content entity"@en) AnnotationAssertion(rdfs:label obo:IAO_0000030 "information content entity"@en) SubClassOf(obo:IAO_0000030 obo:BFO_0000031) # Class: obo:IAO_0000078 (curation status specification) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000078 "curation status specification"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000078 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000078 "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000078 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000078 "PERSON:Bill Bug"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000078 "GROUP:OBI:"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000078 "OBI_0000266"@en) AnnotationAssertion(rdfs:label obo:IAO_0000078 "curation status specification"@en) EquivalentClasses(obo:IAO_0000078 ObjectOneOf(obo:IAO_0000002 obo:IAO_0000120 obo:IAO_0000121 obo:IAO_0000122 obo:IAO_0000123 obo:IAO_0000124 obo:IAO_0000125 obo:IAO_0000423 obo:IAO_0000428)) SubClassOf(obo:IAO_0000078 obo:IAO_0000102) # Class: obo:IAO_0000102 (data about an ontology part) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000102 "data about an ontology part"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000102 "Data about an ontology part is a data item about a part of an ontology, for example a term"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000102 "data about an ontology part is a data item about a part of an ontology, for example a term"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000102 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000102 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000102 "data about an ontology part"@en) SubClassOf(obo:IAO_0000102 obo:IAO_0000027) # Class: obo:IAO_0000225 (obsolescence reason specification) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000225 "obsolescence reason specification"@en) AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000225 obo:IAO_0000125) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000225 "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000225 "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000225 "PERSON: Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000225 "PERSON: Melanie Courtot"@en) AnnotationAssertion(rdfs:label obo:IAO_0000225 "obsolescence reason specification"@en) EquivalentClasses(obo:IAO_0000225 ObjectOneOf(obo:IAO_0000103 obo:IAO_0000226 obo:IAO_0000227 obo:IAO_0000228 obo:IAO_0000229)) EquivalentClasses(obo:IAO_0000225 ObjectOneOf(obo:IAO_0000103 obo:IAO_0000226 obo:IAO_0000227 obo:IAO_0000228 obo:IAO_0000229 obo:OMO_0001000)) SubClassOf(obo:IAO_0000225 obo:IAO_0000102) # Class: obo:IAO_0000409 (denotator type) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000409 "denotator type"@en) AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000409 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities.") AnnotationAssertion(obo:IAO_0000112 obo:IAO_0000409 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities."@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000409 "A denotator type indicates how a term should be interpreted from an ontological perspective.") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000409 "A denotator type indicates how a term should be interpreted from an ontological perspective."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000409 "Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000409 "Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000409 "Barry Smith, Werner Ceusters") AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000409 "Barry Smith, Werner Ceusters"@en) AnnotationAssertion(rdfs:label obo:IAO_0000409 "denotator type") AnnotationAssertion(rdfs:label obo:IAO_0000409 "denotator type"@en) EquivalentClasses(obo:IAO_0000409 ObjectOneOf(obo:IAO_0000410 obo:IAO_0000420 obo:IAO_0000421)) SubClassOf(obo:IAO_0000409 obo:IAO_0000102) # Class: obo:IAO_8000000 (ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000000 "ontology module"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_8000000 "I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000000 "ontology file"@en) AnnotationAssertion(obo:IAO_0000232 obo:IAO_8000000 "This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology."@en) AnnotationAssertion(rdfs:label obo:IAO_8000000 "ontology module"@en) SubClassOf(obo:IAO_8000000 obo:IAO_0000102) # Class: obo:IAO_8000001 (base ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000001 "base ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000001 "An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies."@en) AnnotationAssertion(rdfs:label obo:IAO_8000001 "base ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000001 ) SubClassOf(obo:IAO_8000001 obo:IAO_8000000) # Class: obo:IAO_8000002 (editors ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000002 "editors ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000002 "An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000002 "source ontology module"@en) AnnotationAssertion(rdfs:label obo:IAO_8000002 "editors ontology module"@en) SubClassOf(obo:IAO_8000002 obo:IAO_8000000) # Class: obo:IAO_8000003 (main release ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000003 "main release ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000003 "An ontology module that is intended to be the primary release product and the one consumed by the majority of tools."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_8000003 "TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module"@en) AnnotationAssertion(rdfs:label obo:IAO_8000003 "main release ontology module"@en) SubClassOf(obo:IAO_8000003 obo:IAO_8000000) # Class: obo:IAO_8000004 (bridge ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000004 "bridge ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000004 "An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module."@en) AnnotationAssertion(rdfs:label obo:IAO_8000004 "bridge ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000004 ) SubClassOf(obo:IAO_8000004 obo:IAO_8000000) # Class: obo:IAO_8000005 (import ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000005 "import ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000005 "A subset ontology module that is intended to be imported from another ontology."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_8000005 "TODO: add axioms that indicate this is the output of a module extraction process."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000005 "import file"@en) AnnotationAssertion(rdfs:label obo:IAO_8000005 "import ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000005 ) SubClassOf(obo:IAO_8000005 obo:IAO_8000006) # Class: obo:IAO_8000006 (subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000006 "subset ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000006 "An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000006 "ontology slim"@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000006 "subset ontology"@en) AnnotationAssertion(rdfs:label obo:IAO_8000006 "subset ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000006 ) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000006 ) SubClassOf(obo:IAO_8000006 obo:IAO_8000000) # Class: obo:IAO_8000007 (curation subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000007 "curation subset ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000007 "A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation."@en) AnnotationAssertion(rdfs:label obo:IAO_8000007 "curation subset ontology module"@en) SubClassOf(obo:IAO_8000007 obo:IAO_8000006) # Class: obo:IAO_8000008 (analysis subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000008 "analysis ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000008 "An ontology module that is intended for usage in analysis or discovery applications."@en) AnnotationAssertion(rdfs:label obo:IAO_8000008 "analysis subset ontology module"@en) SubClassOf(obo:IAO_8000008 obo:IAO_8000006) # Class: obo:IAO_8000009 (single layer subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000009 "single layer ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000009 "A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000009 "ribbon subset"@en) AnnotationAssertion(rdfs:label obo:IAO_8000009 "single layer subset ontology module"@en) SubClassOf(obo:IAO_8000009 obo:IAO_8000006) # Class: obo:IAO_8000010 (exclusion subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000010 "exclusion subset ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000010 "A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000010 "antislim"@en) AnnotationAssertion(rdfs:label obo:IAO_8000010 "exclusion subset ontology module"@en) SubClassOf(obo:IAO_8000010 obo:IAO_8000006) # Class: obo:IAO_8000011 (external import ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000011 "external import ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000011 "An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000011 "external import"@en) AnnotationAssertion(rdfs:label obo:IAO_8000011 "external import ontology module"@en) SubClassOf(obo:IAO_8000011 obo:IAO_8000005) # Class: obo:IAO_8000012 (species subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000012 "species subset ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000012 "A subset ontology that is crafted to either include or exclude a taxonomic grouping of species."@en) AnnotationAssertion(obo:IAO_0000118 obo:IAO_8000012 "taxon subset"@en) AnnotationAssertion(rdfs:label obo:IAO_8000012 "species subset ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000012 ) SubClassOf(obo:IAO_8000012 obo:IAO_8000006) # Class: obo:IAO_8000013 (reasoned ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000013 "reasoned ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000013 "An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available."@en) AnnotationAssertion(rdfs:label obo:IAO_8000013 "reasoned ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000013 ) SubClassOf(obo:IAO_8000013 obo:IAO_8000000) # Class: obo:IAO_8000014 (generated ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000014 "generated ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000014 "An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_8000014 "TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process"@en) AnnotationAssertion(rdfs:label obo:IAO_8000014 "generated ontology module"@en) SubClassOf(obo:IAO_8000014 obo:IAO_8000000) # Class: obo:IAO_8000015 (template generated ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000015 "template generated ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000015 "An ontology module that is automatically generated from a template specification and fillers for slots in that template."@en) AnnotationAssertion(rdfs:label obo:IAO_8000015 "template generated ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000015 ) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000015 ) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000015 ) SubClassOf(obo:IAO_8000015 obo:IAO_8000014) # Class: obo:IAO_8000016 (taxonomic bridge ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000016 "taxonomic bridge ontology module"@en) AnnotationAssertion(rdfs:label obo:IAO_8000016 "taxonomic bridge ontology module"@en) SubClassOf(obo:IAO_8000016 obo:IAO_8000004) # Class: obo:IAO_8000017 (ontology module subsetted by expressivity) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000017 "ontology module subsetted by expressivity"@en) AnnotationAssertion(rdfs:label obo:IAO_8000017 "ontology module subsetted by expressivity"@en) SubClassOf(obo:IAO_8000017 obo:IAO_8000006) # Class: obo:IAO_8000018 (obo basic subset ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000018 "obo basic subset ontology module"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_8000018 "A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports"@en) AnnotationAssertion(rdfs:label obo:IAO_8000018 "obo basic subset ontology module"@en) AnnotationAssertion(rdfs:seeAlso obo:IAO_8000018 ) SubClassOf(obo:IAO_8000018 obo:IAO_8000017) # Class: obo:IAO_8000019 (ontology module subsetted by OWL profile) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000019 "ontology module subsetted by OWL profile"@en) AnnotationAssertion(rdfs:label obo:IAO_8000019 "ontology module subsetted by OWL profile"@en) SubClassOf(obo:IAO_8000019 obo:IAO_8000017) # Class: obo:IAO_8000020 (EL++ ontology module) AnnotationAssertion(obo:IAO_0000111 obo:IAO_8000020 "EL++ ontology module"@en) AnnotationAssertion(rdfs:label obo:IAO_8000020 "EL++ ontology module"@en) SubClassOf(obo:IAO_8000020 obo:IAO_8000019) # Class: obo:IDO_0000000 (_obsolete_process) AnnotationAssertion(rdfs:label obo:IDO_0000000 "_obsolete_process"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000000 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000000 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000001 (_obsolete_role) AnnotationAssertion(rdfs:label obo:IDO_0000001 "_obsolete_role"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000001 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000001 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000002 (_obsolete_quality) AnnotationAssertion(rdfs:label obo:IDO_0000002 "_obsolete_quality"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000002 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000002 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000003 (_obsolete_object) AnnotationAssertion(rdfs:label obo:IDO_0000003 "_obsolete_object"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000003 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000003 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000004 (_obsolete_virulence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000004 "'the degree of pathogenicitynnpathogenicity and virulence are used in some communities as synonyms.'-ID[O]:0000004: the degree of pathogenicitynnpathogenicity and virulence are used in some communities as synonyms."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000004 "id 'virulence'-ID[O]:0000004 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000004 "_obsolete_virulence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000004 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000004 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000005 (_obsolete_swollen) AnnotationAssertion(rdfs:label obo:IDO_0000005 "_obsolete_swollen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000005 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000005 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000006 (_obsolete_toxicity) AnnotationAssertion(rdfs:label obo:IDO_0000006 "_obsolete_toxicity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000006 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000006 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000007 (_obsolete_active) AnnotationAssertion(rdfs:label obo:IDO_0000007 "_obsolete_active"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000007 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000007 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000008 (_obsolete_contagious) AnnotationAssertion(rdfs:label obo:IDO_0000008 "_obsolete_contagious"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000008 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000008 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000009 (_obsolete_latency) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000009 "'infection has occurred, but it might not have manifested itselfnquality of being in a non replicative statentime to manifest itself na pathogen when it is in a non replicative state'-ID[O]:0000009: infection has occurred, but it might not have manifested itselfnquality of being in a non replicative statentime to manifest itself na pathogen when it is in a non replicative state"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000009 "id 'latency'-ID[O]:0000009 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000009 "_obsolete_latency"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000009 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000009 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000010 (_obsolete_immunosuppressed) AnnotationAssertion(rdfs:label obo:IDO_0000010 "_obsolete_immunosuppressed"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000010 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000010 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000011 (_obsolete_exogenous) AnnotationAssertion(rdfs:label obo:IDO_0000011 "_obsolete_exogenous"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000011 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000011 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000012 (_obsolete_immunity) AnnotationAssertion(rdfs:label obo:IDO_0000012 "_obsolete_immunity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000012 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000012 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000013 (_obsolete_protective) AnnotationAssertion(rdfs:label obo:IDO_0000013 "_obsolete_protective"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000013 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000013 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000015 (_obsolete_temperature) AnnotationAssertion(rdfs:label obo:IDO_0000015 "_obsolete_temperature"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000015 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000015 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000016 (_obsolete_inactivated) AnnotationAssertion(rdfs:label obo:IDO_0000016 "_obsolete_inactivated"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000016 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000016 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000017 (_obsolete_mortality) AnnotationAssertion(rdfs:label obo:IDO_0000017 "_obsolete_mortality"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000017 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000017 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000018 (_obsolete_pandemic) AnnotationAssertion(rdfs:label obo:IDO_0000018 "_obsolete_pandemic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000018 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000018 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000019 (_obsolete_prevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000019 "'total number of cases of a particular disease at a given time in a particular population divided by the number of individuals in that particular populationnnthe burden of a disease in a population'-ID[O]:0000019: total number of cases of a particular disease at a given time in a particular population divided by the number of individuals in that particular populationnnthe burden of a disease in a population"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000019 "id 'prevalence'-ID[O]:0000019 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000019 "_obsolete_prevalence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000019 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000019 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000020 (_obsolete_epidemic) AnnotationAssertion(rdfs:label obo:IDO_0000020 "_obsolete_epidemic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000020 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000020 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000021 (_obsolete_infected) AnnotationAssertion(rdfs:label obo:IDO_0000021 "_obsolete_infected"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000021 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000021 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000022 (_obsolete_live) AnnotationAssertion(rdfs:label obo:IDO_0000022 "_obsolete_live"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000022 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000022 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000023 (_obsolete_zoonotic) AnnotationAssertion(rdfs:label obo:IDO_0000023 "_obsolete_zoonotic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000023 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000023 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000024 (_obsolete_immunocompromised) AnnotationAssertion(rdfs:label obo:IDO_0000024 "_obsolete_immunocompromised"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000024 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000024 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000025 (_obsolete_pathogenicity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000025 "'the ability of the biotic entity to cause disease in a host of a given typenndo we need to say damage instead of disease?nnpathogenicity and virulence are used as synonyms in some communities'-ID[O]:0000025: the ability of the biotic entity to cause disease in a host of a given typenndo we need to say damage instead of disease?nnpathogenicity and virulence are used as synonyms in some communities"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000025 "id 'pathogenicity'-ID[O]:0000025 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000025 "_obsolete_pathogenicity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000025 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000025 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000026 (_obsolete_tropism) AnnotationAssertion(rdfs:label obo:IDO_0000026 "_obsolete_tropism"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000026 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000026 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000027 (_obsolete_drug resistance) AnnotationAssertion(rdfs:label obo:IDO_0000027 "_obsolete_drug resistance"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000027 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000027 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000028 (_obsolete_antibiotic resistance) AnnotationAssertion(rdfs:label obo:IDO_0000028 "_obsolete_antibiotic resistance"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000028 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000028 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000029 (_obsolete_incidence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000029 "'number of new cases in a given period of time'-ID[O]:0000029: number of new cases in a given period of time"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000029 "id 'incidence'-ID[O]:0000029 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000029 "_obsolete_incidence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000029 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000029 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000030 (_obsolete_invasive) AnnotationAssertion(rdfs:label obo:IDO_0000030 "_obsolete_invasive"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000030 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000030 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000031 (_obsolete_endogenous) AnnotationAssertion(rdfs:label obo:IDO_0000031 "_obsolete_endogenous"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000031 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000031 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000032 (_obsolete_attenuated) AnnotationAssertion(rdfs:label obo:IDO_0000032 "_obsolete_attenuated"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000032 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000032 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000033 (_obsolete_morbidity) AnnotationAssertion(rdfs:label obo:IDO_0000033 "_obsolete_morbidity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000033 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000033 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000034 (_obsolete_endemic) AnnotationAssertion(rdfs:label obo:IDO_0000034 "_obsolete_endemic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000034 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000034 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000035 (_obsolete_fusion protein) AnnotationAssertion(rdfs:label obo:IDO_0000035 "_obsolete_fusion protein"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000035 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000035 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000036 (_obsolete_colonizer) AnnotationAssertion(rdfs:label obo:IDO_0000036 "_obsolete_colonizer"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000036 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000036 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000037 (_obsolete_commensal) AnnotationAssertion(rdfs:label obo:IDO_0000037 "_obsolete_commensal"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000037 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000037 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000038 (_obsolete_parasite) AnnotationAssertion(rdfs:label obo:IDO_0000038 "_obsolete_parasite"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000038 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000038 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000039 (_obsolete_symbiant) AnnotationAssertion(rdfs:label obo:IDO_0000039 "_obsolete_symbiant"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000039 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000039 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000040 (_obsolete_virulence factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000040 "'role played by a portion of substance to promote virulencennmagnitudendegree of pathogenesis'-ID[O]:0000040: role played by a portion of substance to promote virulencennmagnitudendegree of pathogenesis"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000040 "id 'virulence factor'-ID[O]:0000040 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000040 "_obsolete_virulence factor"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000040 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000040 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000041 (_obsolete_route of entry) AnnotationAssertion(rdfs:label obo:IDO_0000041 "_obsolete_route of entry"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000041 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000041 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000042 (_obsolete_invasin) AnnotationAssertion(rdfs:label obo:IDO_0000042 "_obsolete_invasin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000042 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000042 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000043 (_obsolete_toxin) AnnotationAssertion(rdfs:label obo:IDO_0000043 "_obsolete_toxin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000043 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000043 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000044 (_obsolete_endotoxin) AnnotationAssertion(rdfs:label obo:IDO_0000044 "_obsolete_endotoxin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000044 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000044 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000045 (_obsolete_exotoxin) AnnotationAssertion(rdfs:label obo:IDO_0000045 "_obsolete_exotoxin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000045 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000045 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000046 (_obsolete_sign) AnnotationAssertion(rdfs:label obo:IDO_0000046 "_obsolete_sign"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000046 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000046 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000047 (_obsolete_treatment) AnnotationAssertion(rdfs:label obo:IDO_0000047 "_obsolete_treatment"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000047 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000047 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000048 (_obsolete_symptom) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000048 "'look at mathias's ontology of cancer to get all the subterms...its under quality there'-ID[O]:0000048: look at mathias's ontology of cancer to get all the subterms...its under quality there"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000048 "id 'symptom'-ID[O]:0000048 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000048 "_obsolete_symptom"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000048 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000048 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000049 (_obsolete_antimicrobial) AnnotationAssertion(rdfs:label obo:IDO_0000049 "_obsolete_antimicrobial"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000049 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000049 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000050 (_obsolete_medicine) AnnotationAssertion(rdfs:label obo:IDO_0000050 "_obsolete_medicine"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000050 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000050 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000051 (_obsolete_therapeutic) AnnotationAssertion(rdfs:label obo:IDO_0000051 "_obsolete_therapeutic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000051 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000051 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000052 (_obsolete_vaccine) AnnotationAssertion(rdfs:label obo:IDO_0000052 "_obsolete_vaccine"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000052 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000052 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000053 (_obsolete_antibiotic) AnnotationAssertion(rdfs:label obo:IDO_0000053 "_obsolete_antibiotic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000053 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000053 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000054 (_obsolete_colonization factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000054 "'role played by portion of physical substance which promotes colonization'-ID[O]:0000054: role played by portion of physical substance which promotes colonization"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000054 "id 'colonization factor'-ID[O]:0000054 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000054 "_obsolete_colonization factor"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000054 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000054 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000055 (_obsolete_adhesion factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000055 "'role played by portion of physical substance utilized by an organism in order to establish adherence to a surface in a host'-ID[O]:0000055: role played by portion of physical substance utilized by an organism in order to establish adherence to a surface in a host"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000055 "id 'adhesion factor'-ID[O]:0000055 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000055 "_obsolete_adhesion factor"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000055 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000055 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000056 (_obsolete_host) AnnotationAssertion(rdfs:label obo:IDO_0000056 "_obsolete_host"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000056 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000056 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000057 (_obsolete_carrier) AnnotationAssertion(rdfs:label obo:IDO_0000057 "_obsolete_carrier"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000057 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000057 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000058 (_obsolete_chronic carrier) AnnotationAssertion(rdfs:label obo:IDO_0000058 "_obsolete_chronic carrier"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000058 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000058 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000059 (_obsolete_reservoir) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000059 "'holding place for a potential pathogen...animate or inanimate'-ID[O]:0000059: holding place for a potential pathogen...animate or inanimate"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000059 "id 'reservoir'-ID[O]:0000059 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000059 "_obsolete_reservoir"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000059 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000059 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000060 (_obsolete_fomite) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000060 "'inanimate holder, is water a fomite or only a reservoir?'-ID[O]:0000060: inanimate holder, is water a fomite or only a reservoir?"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000060 "id 'fomite'-ID[O]:0000060 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000060 "_obsolete_fomite"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000060 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000060 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000061 (_obsolete_mobile genetic element) AnnotationAssertion(rdfs:label obo:IDO_0000061 "_obsolete_mobile genetic element"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000061 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000061 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000062 (_obsolete_pathogenicity island) AnnotationAssertion(rdfs:label obo:IDO_0000062 "_obsolete_pathogenicity island"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000062 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000062 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000063 (_obsolete_vector) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000063 "'holder and a carrier (actively transmits) and living: potentially make a cross product. every vector comes into contact with the target. (from one host to another?)'-ID[O]:0000063: holder and a carrier (actively transmits) and living: potentially make a cross product. every vector comes into contact with the target. (from one host to another?)"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000063 "id 'vector'-ID[O]:0000063 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000063 "_obsolete_vector"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000063 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000063 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000064 (_obsolete_pathogen) AnnotationAssertion(rdfs:label obo:IDO_0000064 "_obsolete_pathogen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000064 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000064 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000065 (_obsolete_dependovirus) AnnotationAssertion(rdfs:label obo:IDO_0000065 "_obsolete_dependovirus"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000065 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000065 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000066 (_obsolete_infectious agent) AnnotationAssertion(rdfs:label obo:IDO_0000066 "_obsolete_infectious agent"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000066 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000066 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000067 (_obsolete_opportunistic pathogen) AnnotationAssertion(rdfs:label obo:IDO_0000067 "_obsolete_opportunistic pathogen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000067 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000067 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000068 (_obsolete_emerging pathogen) AnnotationAssertion(rdfs:label obo:IDO_0000068 "_obsolete_emerging pathogen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000068 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000068 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000069 (_obsolete_primary pathogen) AnnotationAssertion(rdfs:label obo:IDO_0000069 "_obsolete_primary pathogen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000069 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000069 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000070 (_obsolete_prion) AnnotationAssertion(rdfs:label obo:IDO_0000070 "_obsolete_prion"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000070 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000070 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000071 (_obsolete_initiation of infection) AnnotationAssertion(rdfs:label obo:IDO_0000071 "_obsolete_initiation of infection"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000071 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000071 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000072 (_obsolete_disruption of body surface) AnnotationAssertion(rdfs:label obo:IDO_0000072 "_obsolete_disruption of body surface"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000072 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000072 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000073 (_obsolete_disruption of normal microbioflora) AnnotationAssertion(rdfs:label obo:IDO_0000073 "_obsolete_disruption of normal microbioflora"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000073 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000073 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000074 (_obsolete_pathogen adherence to host cell) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000074 "'create cross products for \"host\" and \"pathogen\" that will be part of this process.'-ID[O]:0000074: create cross products for \"host\" and \"pathogen\" that will be part of this process."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000074 "id 'pathogen adherence to host cell'-ID[O]:0000074 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000074 "_obsolete_pathogen adherence to host cell"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000074 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000074 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000075 (_obsolete_nonspecific adherence) AnnotationAssertion(rdfs:label obo:IDO_0000075 "_obsolete_nonspecific adherence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000075 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000075 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000076 (_obsolete_specific adherence) AnnotationAssertion(rdfs:label obo:IDO_0000076 "_obsolete_specific adherence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000076 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000076 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000077 (_obsolete_afimbrial specific adherence) AnnotationAssertion(rdfs:label obo:IDO_0000077 "_obsolete_afimbrial specific adherence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000077 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000077 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000078 (_obsolete_fimbrial specific adherence) AnnotationAssertion(rdfs:label obo:IDO_0000078 "_obsolete_fimbrial specific adherence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000078 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000078 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000079 (_obsolete_penetration of epithelial barrier) AnnotationAssertion(rdfs:label obo:IDO_0000079 "_obsolete_penetration of epithelial barrier"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000079 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000079 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000080 (_obsolete_penetration via injury of epithelial barrier) AnnotationAssertion(rdfs:label obo:IDO_0000080 "_obsolete_penetration via injury of epithelial barrier"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000080 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000080 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000081 (_obsolete_transcytosis) AnnotationAssertion(rdfs:label obo:IDO_0000081 "_obsolete_transcytosis"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000081 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000081 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000082 (_obsolete_utilization of membranous cell gateway) AnnotationAssertion(rdfs:label obo:IDO_0000082 "_obsolete_utilization of membranous cell gateway"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000082 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000082 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000083 (_obsolete_transmission) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000083 "'the process by which an infectious agent passes from one organism to another organism'-ID[O]:0000083: the process by which an infectious agent passes from one organism to another organism"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000083 "id 'transmission'-ID[O]:0000083 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000083 "_obsolete_transmission"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000083 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000083 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000084 (_obsolete_pathogenesis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000084 "'GO:nthe specific processes that generate the ability of an organism to cause disease in anothernnnThis is defined in GO so import.'-ID[O]:0000084: GO:nthe specific processes that generate the ability of an organism to cause disease in anothernnnThis is defined in GO so import."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000084 "id 'pathogenesis'-ID[O]:0000084 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000084 "_obsolete_pathogenesis"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000084 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000084 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000085 (_obsolete_penetration of host cell) AnnotationAssertion(rdfs:label obo:IDO_0000085 "_obsolete_penetration of host cell"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000085 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000085 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000086 (_obsolete_engulfment) AnnotationAssertion(rdfs:label obo:IDO_0000086 "_obsolete_engulfment"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000086 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000086 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000087 (_obsolete_fusion with host cell membrane) AnnotationAssertion(rdfs:label obo:IDO_0000087 "_obsolete_fusion with host cell membrane"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000087 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000087 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000088 (_obsolete_membrane invagination) AnnotationAssertion(rdfs:label obo:IDO_0000088 "_obsolete_membrane invagination"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000088 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000088 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000089 (_obsolete_passage through cell membrane) AnnotationAssertion(rdfs:label obo:IDO_0000089 "_obsolete_passage through cell membrane"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000089 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000089 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000090 (_obsolete_engulfment by nonphagocyte) AnnotationAssertion(rdfs:label obo:IDO_0000090 "_obsolete_engulfment by nonphagocyte"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000090 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000090 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000091 (_obsolete_engulfment by phagocyte) AnnotationAssertion(rdfs:label obo:IDO_0000091 "_obsolete_engulfment by phagocyte"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000091 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000091 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000092 (_obsolete_damaging host cells and tissues in subepithelial space) AnnotationAssertion(rdfs:label obo:IDO_0000092 "_obsolete_damaging host cells and tissues in subepithelial space"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000092 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000092 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000093 (_obsolete_induction of damaging host immune response) AnnotationAssertion(rdfs:label obo:IDO_0000093 "_obsolete_induction of damaging host immune response"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000093 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000093 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000094 (_obsolete_pathogen-induced apoptosis) AnnotationAssertion(rdfs:label obo:IDO_0000094 "_obsolete_pathogen-induced apoptosis"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000094 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000094 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000095 (_obsolete_pathogen-induced necrosis) AnnotationAssertion(rdfs:label obo:IDO_0000095 "_obsolete_pathogen-induced necrosis"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000095 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000095 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000096 (_obsolete_virus-induced cytopathogenesis) AnnotationAssertion(rdfs:label obo:IDO_0000096 "_obsolete_virus-induced cytopathogenesis"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000096 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000096 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000097 (_obsolete_pathogen spread through host) AnnotationAssertion(rdfs:label obo:IDO_0000097 "_obsolete_pathogen spread through host"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000097 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000097 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000098 (_obsolete_infectious disease) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000098 "'comment about the instances:nncollections of etiologically connected cases of infectious disease in a given population'-ID[O]:0000098: comment about the instances:nncollections of etiologically connected cases of infectious disease in a given population"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000098 "id 'infectious disease'-ID[O]:0000098 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000098 "_obsolete_infectious disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000098 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000098 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000100 (_obsolete_pathogen evasion of host immune response) AnnotationAssertion(rdfs:label obo:IDO_0000100 "_obsolete_pathogen evasion of host immune response"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000100 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000100 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000101 (_obsolete_emergence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000101 "'the process by which an infectious disease establishes itself in a new population (or at a sufficiently higher rate? higher prevalence and/or higher incidence)'-ID[O]:0000101: the process by which an infectious disease establishes itself in a new population (or at a sufficiently higher rate? higher prevalence and/or higher incidence)"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000101 "id 'emergence'-ID[O]:0000101 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000101 "_obsolete_emergence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000101 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000101 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000102 (_obsolete_epidemiological spread of disease) AnnotationAssertion(rdfs:label obo:IDO_0000102 "_obsolete_epidemiological spread of disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000102 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000102 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000103 (_obsolete_outbreak) AnnotationAssertion(rdfs:label obo:IDO_0000103 "_obsolete_outbreak"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000103 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000103 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000104 (_obsolete_infection) AnnotationAssertion(rdfs:label obo:IDO_0000104 "_obsolete_infection"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000104 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000104 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000105 (_obsolete_infection treatment process) AnnotationAssertion(rdfs:label obo:IDO_0000105 "_obsolete_infection treatment process"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000105 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000105 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000106 (_obsolete_immunization) AnnotationAssertion(rdfs:label obo:IDO_0000106 "_obsolete_immunization"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000106 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000106 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000107 (_obsolete_prevention of infection) AnnotationAssertion(rdfs:label obo:IDO_0000107 "_obsolete_prevention of infection"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000107 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000107 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000108 (_obsolete_transport by blood) AnnotationAssertion(rdfs:label obo:IDO_0000108 "_obsolete_transport by blood"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000108 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000108 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000109 (_obsolete_transport by lymph) AnnotationAssertion(rdfs:label obo:IDO_0000109 "_obsolete_transport by lymph"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000109 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000109 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000110 (_obsolete_modulation of inflammatory response) AnnotationAssertion(rdfs:label obo:IDO_0000110 "_obsolete_modulation of inflammatory response"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000110 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000110 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000111 (_obsolete_antigenic variation) AnnotationAssertion(rdfs:label obo:IDO_0000111 "_obsolete_antigenic variation"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000111 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000111 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000112 (_obsolete_resist phagocytosis in subepithelial space) AnnotationAssertion(rdfs:label obo:IDO_0000112 "_obsolete_resist phagocytosis in subepithelial space"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000112 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000112 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000113 (_obsolete_serum resistance) AnnotationAssertion(rdfs:label obo:IDO_0000113 "_obsolete_serum resistance"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000113 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000113 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000114 (_obsolete_phase variation) AnnotationAssertion(rdfs:label obo:IDO_0000114 "_obsolete_phase variation"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000114 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000114 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000115 (_obsolete_genetic diversification) AnnotationAssertion(rdfs:label obo:IDO_0000115 "_obsolete_genetic diversification"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000115 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000115 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000116 (_obsolete_complement resistance) AnnotationAssertion(rdfs:label obo:IDO_0000116 "_obsolete_complement resistance"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000116 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000116 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000117 (_obsolete_epidemic spread of disease) AnnotationAssertion(rdfs:label obo:IDO_0000117 "_obsolete_epidemic spread of disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000117 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000117 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000118 (_obsolete_pandemic spread of disease) AnnotationAssertion(rdfs:label obo:IDO_0000118 "_obsolete_pandemic spread of disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000118 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000118 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000119 (_obsolete_vaccination) AnnotationAssertion(rdfs:label obo:IDO_0000119 "_obsolete_vaccination"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000119 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000119 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000200 (_obsolete_mode of transmission) AnnotationAssertion(rdfs:label obo:IDO_0000200 "_obsolete_mode of transmission"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000200 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000200 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000201 (_obsolete_end reservoir) AnnotationAssertion(rdfs:label obo:IDO_0000201 "_obsolete_end reservoir"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000201 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000201 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000204 (_obsolete_factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000204 "'Role played by portion of physical substance in a biological process'-ID[O]:0000204: Role played by portion of physical substance in a biological process"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000204 "id 'factor'-ID[O]:0000204 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000204 "_obsolete_factor"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000204 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000204 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000205 (_obsolete_colonization) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000205 "'the process by which a biotic entity establishes multiple copies of itself in a new environment (including an organismal environment).nnfix idn\"native\" environment term'-ID[O]:0000205: the process by which a biotic entity establishes multiple copies of itself in a new environment (including an organismal environment).nnfix idn\"native\" environment term"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000205 "id 'colonization'-ID[O]:0000205 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000205 "_obsolete_colonization"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000205 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000205 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000206 (_obsolete_biotic) AnnotationAssertion(rdfs:label obo:IDO_0000206 "_obsolete_biotic"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000206 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000206 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000207 (_obsolete_adhesin) AnnotationAssertion(rdfs:label obo:IDO_0000207 "_obsolete_adhesin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000207 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000207 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000208 (_obsolete_seroprevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000208 "'prevalence as measured by antibody'-ID[O]:0000208: prevalence as measured by antibody"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000208 "id 'seroprevalence'-ID[O]:0000208 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000208 "_obsolete_seroprevalence"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000208 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000208 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000209 (_obsolete_dormancy) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000209 "'quality [state] of an organism that during its life cycle in which its growth. development, metabolism, etc is temporarily suspended nnnsuspended state, non-replicative state, resting state'-ID[O]:0000209: quality [state] of an organism that during its life cycle in which its growth. development, metabolism, etc is temporarily suspended nnnsuspended state, non-replicative state, resting state"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000209 "id 'dormancy'-ID[O]:0000209 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000209 "_obsolete_dormancy"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000209 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000209 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000210 (_obsolete_quality of host) AnnotationAssertion(rdfs:label obo:IDO_0000210 "_obsolete_quality of host"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000210 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000210 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000211 (_obsolete_quality of pathogen) AnnotationAssertion(rdfs:label obo:IDO_0000211 "_obsolete_quality of pathogen"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000211 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000211 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000212 (_obsolete_susceptibility) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000212 "'can change depending on environmentnnwhere should susceptibility factors go?'-ID[O]:0000212: can change depending on environmentnnwhere should susceptibility factors go?"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000212 "id 'susceptibility'-ID[O]:0000212 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000212 "_obsolete_susceptibility"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000212 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000212 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000213 (_obsolete_resistance) AnnotationAssertion(rdfs:label obo:IDO_0000213 "_obsolete_resistance"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000213 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000213 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000214 (_obsolete_refractoriness) AnnotationAssertion(rdfs:label obo:IDO_0000214 "_obsolete_refractoriness"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000214 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000214 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000215 (_obsolete_quality of host population) AnnotationAssertion(rdfs:label obo:IDO_0000215 "_obsolete_quality of host population"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000215 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000215 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000216 (_obsolete_herd immunity) AnnotationAssertion(rdfs:label obo:IDO_0000216 "_obsolete_herd immunity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000216 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000216 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000217 (_obsolete_quality of infectious disease) AnnotationAssertion(rdfs:label obo:IDO_0000217 "_obsolete_quality of infectious disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000217 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000217 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000218 (_obsolete_case of infectious disease) AnnotationAssertion(rdfs:label obo:IDO_0000218 "_obsolete_case of infectious disease"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000218 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000218 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000219 (_obsolete_incubation period) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000219 "'agent is incubated?ndisease is incubated?'-ID[O]:0000219: agent is incubated?ndisease is incubated?"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000219 "id 'incubation period'-ID[O]:0000219 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000219 "_obsolete_incubation period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000219 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000219 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000220 (_obsolete_infectivity period) AnnotationAssertion(rdfs:label obo:IDO_0000220 "_obsolete_infectivity period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000220 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000220 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000221 (_obsolete_infectious disease progression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000221 "'the unfolding or course of infectious diseasennwhat do we say about infectious disease that always remain latent nwhat about when a pathogen continues its progression nnwe need to think about whether we need a term called stagenlife cycle?nprogression?ndevelopment?'-ID[O]:0000221: the unfolding or course of infectious diseasennwhat do we say about infectious disease that always remain latent nwhat about when a pathogen continues its progression nnwe need to think about whether we need a term called stagenlife cycle?nprogression?ndevelopment?"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000221 "id 'infectious disease progression'-ID[O]:0000221 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000221 "_obsolete_infectious disease progression"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000221 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000221 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000222 (_obsolete_infectious disease course) AnnotationAssertion(rdfs:label obo:IDO_0000222 "_obsolete_infectious disease course"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000222 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000222 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000223 (_obsolete_host recovery period) AnnotationAssertion(rdfs:label obo:IDO_0000223 "_obsolete_host recovery period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000223 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000223 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000224 (_obsolete_intrinsic incubation period) AnnotationAssertion(rdfs:label obo:IDO_0000224 "_obsolete_intrinsic incubation period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000224 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000224 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000225 (_obsolete_extrinsic incubation period) AnnotationAssertion(rdfs:label obo:IDO_0000225 "_obsolete_extrinsic incubation period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000225 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000225 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000226 (_obsolete_pathogen life cycle) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000226 "'is this just the part of the life cycle of the biotic entity that has role pathogen for the period of time while it has role pathogen?nncan include phases in the existence of the entity before it becomes a pathogen'-ID[O]:0000226: is this just the part of the life cycle of the biotic entity that has role pathogen for the period of time while it has role pathogen?nncan include phases in the existence of the entity before it becomes a pathogen"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000226 "id 'pathogen life cycle'-ID[O]:0000226 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000226 "_obsolete_pathogen life cycle"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000226 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000226 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000227 (_obsolete_dormancy period) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000227 "'is a period a process?'-ID[O]:0000227: is a period a process?"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000227 "id 'dormancy period'-ID[O]:0000227 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000227 "_obsolete_dormancy period"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000227 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000227 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000228 (_obsolete_pathogen outbreak) AnnotationAssertion(rdfs:label obo:IDO_0000228 "_obsolete_pathogen outbreak"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000228 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000228 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000229 (_obsolete_oral-fecal transmission) AnnotationAssertion(rdfs:label obo:IDO_0000229 "_obsolete_oral-fecal transmission"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000229 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000229 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000230 (_obsolete_vertical transmission) AnnotationAssertion(rdfs:label obo:IDO_0000230 "_obsolete_vertical transmission"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000230 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000230 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000231 (_obsolete_horizontal transmission) AnnotationAssertion(rdfs:label obo:IDO_0000231 "_obsolete_horizontal transmission"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000231 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000231 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000232 (_obsolete_pathogen life cycle stage) AnnotationAssertion(rdfs:label obo:IDO_0000232 "_obsolete_pathogen life cycle stage"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000232 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000232 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000233 (_obsolete_infectious disease progression stage) AnnotationAssertion(rdfs:label obo:IDO_0000233 "_obsolete_infectious disease progression stage"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000233 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000233 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000300 (_obsolete_progression rate) AnnotationAssertion(rdfs:label obo:IDO_0000300 "_obsolete_progression rate"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000300 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000300 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000301 (_obsolete_rapid progression) AnnotationAssertion(rdfs:label obo:IDO_0000301 "_obsolete_rapid progression"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000301 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000301 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000302 (_obsolete_long-term non-progression) AnnotationAssertion(rdfs:label obo:IDO_0000302 "_obsolete_long-term non-progression"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000302 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000302 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000303 (_obsolete_highly exposed persistently seronegative) AnnotationAssertion(rdfs:label obo:IDO_0000303 "_obsolete_highly exposed persistently seronegative"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000303 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000303 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000305 (_obsolete_co-infected) AnnotationAssertion(rdfs:label obo:IDO_0000305 "_obsolete_co-infected"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000305 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000305 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000306 (_obsolete_fitness) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000306 "'is a quality relating to both bacteria and host'-ID[O]:0000306: is a quality relating to both bacteria and host"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000306 "id 'fitness'-ID[O]:0000306 from IDO 2007. May have replacement - TBD"@en) AnnotationAssertion(rdfs:label obo:IDO_0000306 "_obsolete_fitness"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000306 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000306 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000400 (symbiont role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000400 "A role borne by an organism in symbiosis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000400 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000400 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000400 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000400 "The role is realized in symbiosis.") AnnotationAssertion(rdfs:label obo:IDO_0000400 "symbiont role"@en) SubClassOf(obo:IDO_0000400 obo:BFO_0000023) SubClassOf(obo:IDO_0000400 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0044403)))) DisjointClasses(obo:IDO_0000400 obo:IDO_0000405) DisjointClasses(obo:IDO_0000400 obo:IDO_0000417) DisjointClasses(obo:IDO_0000400 obo:IDO_0000424) DisjointClasses(obo:IDO_0000400 obo:IDO_0000430) DisjointClasses(obo:IDO_0000400 obo:IDO_0000431) DisjointClasses(obo:IDO_0000400 obo:IDO_0000432) DisjointClasses(obo:IDO_0000400 obo:IDO_0000433) DisjointClasses(obo:IDO_0000400 obo:IDO_0000434) DisjointClasses(obo:IDO_0000400 obo:IDO_0000435) DisjointClasses(obo:IDO_0000400 obo:IDO_0000629) DisjointClasses(obo:IDO_0000400 obo:IDO_0000635) # Class: obo:IDO_0000401 (mutualist role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000401 "A symbiont role borne by an organism in virtue of the fact that both symbionts derive a growth, survival, or fitness advantage from symbiosis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000401 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000401 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000401 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000401 "The role is realized in processes that result in the growth, survival, or fitness advantage of either organism.") AnnotationAssertion(rdfs:label obo:IDO_0000401 "mutualist role"@en) SubClassOf(obo:IDO_0000401 obo:IDO_0000400) SubClassOf(obo:IDO_0000401 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0085030)))) # Class: obo:IDO_0000402 (commensal role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000402 "A symbiont role borne by an organism in virtue of the fact that it derives a growth, survival, or fitness advantage from symbiosis, but the other symbiont is neither advantaged nor disadvantaged."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000402 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000402 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000402 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000402 "The role is realized in processes that result in the commensal's growth, survival, or fitness advantage.") AnnotationAssertion(rdfs:label obo:IDO_0000402 "commensal role"@en) SubClassOf(obo:IDO_0000402 obo:IDO_0000400) SubClassOf(obo:IDO_0000402 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0085031)))) # Class: obo:IDO_0000403 (parasite role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000403 "A symbiont role borne by an organism in virtue of the fact that it derives a growth, survival, or fitness advantage from symbiosis while the other symbiont's growth, survival, or fitness is reduced."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000403 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000403 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000403 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000403 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000403 "In the medical community, the term 'parasite' is used with the narrower meaning of eukaryotic pathogen.") AnnotationAssertion(rdfs:comment obo:IDO_0000403 "The role is realized in processes that result in the parasite's growth, survival, or fitness advantage or in the other organism's growth, survival, or fitness reduction.") AnnotationAssertion(rdfs:label obo:IDO_0000403 "parasite role"@en) SubClassOf(obo:IDO_0000403 obo:BFO_0000023) SubClassOf(obo:IDO_0000403 obo:IDO_0000400) # Class: obo:IDO_0000404 (infectious agent role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000404 "A role borne by an infectious agent when contained in a host in which its infectious disposition can be realized."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000404 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000404 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000404 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000404 obo:ido.owl) AnnotationAssertion(rdfs:label obo:IDO_0000404 "infectious agent role"@en) SubClassOf(obo:IDO_0000404 obo:IDO_0000405) SubClassOf(obo:IDO_0000404 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0001025 obo:IDO_0000531)))) # Class: obo:IDO_0000405 (pathogen role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000405 "A role borne by pathogen in virtue of the fact that it or one of its products is sufficiently close to an organism towards which it has the pathogenic disposition to allow realization of the pathogenic disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000405 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000405 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000405 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000405 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000405 "Clostridium botulinum is an example of an entity with the capability to bear the pathogen role but that does not have the capability to bear the infectious agent role or the parasite role. The influenza viruses are examples of organisms that can bear both the infectious agent and pathogen roles.") AnnotationAssertion(rdfs:label obo:IDO_0000405 "pathogen role"@en) SubClassOf(obo:IDO_0000405 obo:BFO_0000023) SubClassOf(obo:IDO_0000405 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000528)) DisjointClasses(obo:IDO_0000405 obo:IDO_0000417) DisjointClasses(obo:IDO_0000405 obo:IDO_0000424) DisjointClasses(obo:IDO_0000405 obo:IDO_0000430) DisjointClasses(obo:IDO_0000405 obo:IDO_0000431) DisjointClasses(obo:IDO_0000405 obo:IDO_0000432) DisjointClasses(obo:IDO_0000405 obo:IDO_0000433) DisjointClasses(obo:IDO_0000405 obo:IDO_0000434) DisjointClasses(obo:IDO_0000405 obo:IDO_0000435) DisjointClasses(obo:IDO_0000405 obo:IDO_0000629) DisjointClasses(obo:IDO_0000405 obo:IDO_0000635) # Class: obo:IDO_0000406 (opportunistic infectious disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000406 "An infectious disposition to become part of a disorder only in organisms whose defenses are compromised."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000406 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000406 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000406 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000406 "opportunitistic pathogenic disposition"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000406 "The disposition is realized in a process by which the bearer becomes part of a disorder in an immunocompromised host.") AnnotationAssertion(rdfs:comment obo:IDO_0000406 "This includes individuals who are immunocompromised or who have damaged barriers that normally protect against infection (e.g. skin)."@en) AnnotationAssertion(rdfs:label obo:IDO_0000406 "opportunistic infectious disposition"@en) SubClassOf(obo:IDO_0000406 obo:IDO_0000452) SubClassOf(obo:IDO_0000406 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000625) ObjectSomeValuesFrom(obo:BFO_0000051 obo:TRANS_0000000) ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000626 ObjectComplementOf(ObjectSomeValuesFrom(obo:BFO_0000066 obo:IDO_0000457)))))))) # Class: obo:IDO_0000407 (primary infectious disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000407 "An infectious disposition to become part of a disorder in organisms that have intact defenses."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000407 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000407 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000407 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000407 "A pathogen with a primary infectious disposition can cause disease or death in both immunocompromised and immunocompetent hosts.") AnnotationAssertion(rdfs:comment obo:IDO_0000407 "A quote from page 3 of Mandell's \"Principles and Practice of Infectious Diseases\" (Sixth edition): \"It is useful to distinguish \"principal\" pathogens, which regularly cause disease in some proportion of susceptible individuals with apparently intact defense systems, from other potentially pathogenic microorganisms. ... even for most organisms classified as principal pathogens, for example, Staphylococcus aureus and the pneumococcus, some impairment or local breakdown in normal host defense mechanisms must occur for these bacteria to cause disease. ... Thus, it seems clear that the capacity of certain microorganisms to cause disease in seemingly uncompromised human hosts on a regular basis reflects some fundamental difference in their virulence capabilities from those of opportunists and the more numerous commensal species that rarely, if ever, cause disease.\"") AnnotationAssertion(rdfs:label obo:IDO_0000407 "primary infectious disposition"@en) EquivalentClasses(obo:IDO_0000407 ObjectIntersectionOf(obo:IDO_0000452 ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000625) ObjectSomeValuesFrom(obo:BFO_0000051 obo:TRANS_0000000) ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000626 ObjectSomeValuesFrom(obo:BFO_0000066 obo:IDO_0000457))))))) SubClassOf(obo:IDO_0000407 obo:IDO_0000452) # Class: obo:IDO_0000408 (symbiont host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000408 "A host role borne by an organism in virtue of the fact that its extended organism contains a second organism and provides an environment supportive for the survival, growth, maturation, or reproduction of that organism. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000408 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000408 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000408 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000408 "The relevant environmental resources may include nutrient resources, warmth, or moisture.") AnnotationAssertion(rdfs:comment obo:IDO_0000408 "The role is realized in processes in which the host makes the relevant environmental resources available to its partner in symbiosis. A bearer of a symbiont host role is bearer also of a symbiont role.") AnnotationAssertion(rdfs:label obo:IDO_0000408 "symbiont host role"@en) SubClassOf(obo:IDO_0000408 obo:IDO_0000629) SubClassOf(obo:IDO_0000408 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000522)))))) DisjointClasses(obo:IDO_0000408 obo:IDO_0000415) # Class: obo:IDO_0000409 (definitive host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000409 "A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis reaches developmental maturity or reproduces sexually in the host. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000409 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000409 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000409 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000409 "primary host role"@en) AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000409 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000409 "The role is realized in developmental and reproduction processes of the host's partner in symbiosis.") AnnotationAssertion(rdfs:label obo:IDO_0000409 "definitive host role"@en) SubClassOf(obo:IDO_0000409 obo:IDO_0000408) SubClassOf(obo:IDO_0000409 obo:IDO_0000629) # Class: obo:IDO_0000410 (intermediate host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000410 "A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis utilizes the host to undergo a developmental stage transition, and the host is required for continuation of the partner's life cycle."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000410 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000410 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000410 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000410 "secondary host role"@en) AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000410 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000410 "The role is realized in developmental processes of the host's partner in symbiosis.") AnnotationAssertion(rdfs:label obo:IDO_0000410 "intermediate host role"@en) SubClassOf(obo:IDO_0000410 obo:IDO_0000408) SubClassOf(obo:IDO_0000410 obo:IDO_0000629) # Class: obo:IDO_0000411 (paratenic host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000411 "A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis utilizes the host to undergo a developmental stage transition, but the host is not required for continuation of the partner's life cycle. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000411 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000411 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000411 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000411 "The role is realized in developmental processes of the host's partner in symbiosis.") AnnotationAssertion(rdfs:label obo:IDO_0000411 "paratenic host role"@en) SubClassOf(obo:IDO_0000411 obo:IDO_0000408) # Class: obo:IDO_0000412 (dead-end host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000412 "A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis has the infectious disposition but cannot be transmitted from the host to the partner's definitive host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000412 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000412 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000412 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000412 "incidental host role"@en) AnnotationAssertion(rdfs:label obo:IDO_0000412 "dead-end host role"@en) SubClassOf(obo:IDO_0000412 obo:IDO_0000408) # Class: obo:IDO_0000413 (parasite host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000413 "A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis derives from the host a growth, survival, or fitness advantage while the host's growth, survival, or fitness is reduced."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000413 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000413 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000413 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000413 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000413 "The partner in symbiosis bears the parasite role.") AnnotationAssertion(rdfs:comment obo:IDO_0000413 "The role is realized in processes that result in the parasite's growth, survival, or fitness advantage or in the host's growth, survival, or fitness reduction.") AnnotationAssertion(rdfs:label obo:IDO_0000413 "parasite host role"@en) SubClassOf(obo:IDO_0000413 obo:IDO_0000408) SubClassOf(obo:IDO_0000413 obo:IDO_0000629) SubClassOf(obo:IDO_0000413 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000526)))))) # Class: obo:IDO_0000414 (infectious agent host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000414 "A pathogen host role borne by an organism in virtue of the fact that its extended organism contains an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000414 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000414 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000414 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000414 "By this definition, vectors and other organisms that may not be infected are bearers of the infectious agent host role.") AnnotationAssertion(rdfs:label obo:IDO_0000414 "infectious agent host role"@en) SubClassOf(obo:IDO_0000414 obo:IDO_0000415) SubClassOf(obo:IDO_0000414 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000596)))))) # Class: obo:IDO_0000415 (pathogen host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000415 "A host role borne by an organism in virtue of the fact that its extended organism contains a pathogen."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000415 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000415 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000415 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000415 "Bearing the infectious agent host role implies bearing the pathogen host role, but the reverse is not true. See comment for infectious agent host role.") AnnotationAssertion(rdfs:label obo:IDO_0000415 "pathogen host role"@en) SubClassOf(obo:IDO_0000415 obo:IDO_0000629) SubClassOf(obo:IDO_0000415 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000528)))))) # Class: obo:IDO_0000416 (infectious agent carrier role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000416 "An infectious agent host role borne by an organism in virtue of the fact that its extended organism contains an infectious agent, the infectious agent has the infectious disposition towards the host, and the host has no symptoms of the infectious disease caused by the infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000416 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000416 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000416 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000416 "infectious agent carrier role"@en) SubClassOf(obo:IDO_0000416 obo:IDO_0000414) # Class: obo:IDO_0000417 (infectious agent transporter role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000417 "A role borne by a material entity in virtue of the fact that an infectious agent is located in or on the entity and the entity has the capability to transfer (either actively or passively) the infectious agent from one location to another. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000417 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000417 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000417 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000417 "The role is realized in a process that transfers an infectious organism from one location to another.") AnnotationAssertion(rdfs:label obo:IDO_0000417 "infectious agent transporter role"@en) SubClassOf(obo:IDO_0000417 obo:BFO_0000023) SubClassOf(obo:IDO_0000417 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0001015 obo:IDO_0000596))) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000002))) DisjointClasses(obo:IDO_0000417 obo:IDO_0000424) DisjointClasses(obo:IDO_0000417 obo:IDO_0000430) DisjointClasses(obo:IDO_0000417 obo:IDO_0000431) DisjointClasses(obo:IDO_0000417 obo:IDO_0000432) DisjointClasses(obo:IDO_0000417 obo:IDO_0000433) DisjointClasses(obo:IDO_0000417 obo:IDO_0000434) DisjointClasses(obo:IDO_0000417 obo:IDO_0000435) DisjointClasses(obo:IDO_0000417 obo:IDO_0000629) DisjointClasses(obo:IDO_0000417 obo:IDO_0000635) # Class: obo:IDO_0000418 (infectious agent vector role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000418 "An infectious agent transporter role that is borne by an organism active in the transfer of an infectious agent to an organism of another Species and in which the agent is infectious."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000418 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000418 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000418 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000418 obo:ido.owl) AnnotationAssertion(rdfs:comment obo:IDO_0000418 "The role is realized in a transmission process. A bearer of a vector role is also a bearer of a host role.") AnnotationAssertion(rdfs:label obo:IDO_0000418 "infectious agent vector role"@en) EquivalentClasses(obo:IDO_0000418 ObjectIntersectionOf(obo:IDO_0000417 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0001015 obo:IDO_0000596))) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000002))) SubClassOf(obo:IDO_0000418 obo:BFO_0000023) SubClassOf(obo:IDO_0000418 obo:IDO_0000417) # Class: obo:IDO_0000419 (mechanical vector of infectious agent role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000419 "An infectious agent vector role borne by an organism in virtue of the fact that the infectious agent does not multiply in or on the vector."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000419 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000419 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000419 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000419 "mechanical vector of infectious agent role"@en) SubClassOf(obo:IDO_0000419 obo:IDO_0000418) SubClassOf(obo:IDO_0000419 ObjectIntersectionOf(obo:IDO_0000418 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0001015 ObjectIntersectionOf(obo:IDO_0000596 ObjectComplementOf(ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0000003 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OBI_0100026)))))))) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000002))) # Class: obo:IDO_0000420 (biological vector of infectious agent role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000420 "An infectious agent vector role borne by an organism in virtue of the fact that the infectious agent multiplies in the vector."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000420 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000420 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000420 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000412 obo:IDO_0000420 obo:ido.owl) AnnotationAssertion(rdfs:label obo:IDO_0000420 "biological vector of infectious agent role"@en) SubClassOf(obo:IDO_0000420 obo:IDO_0000418) SubClassOf(obo:IDO_0000420 ObjectIntersectionOf(obo:IDO_0000418 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0001015 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0000003 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OBI_0100026))))))) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000002))) # Class: obo:IDO_0000421 (infectious agent vehicle role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000421 "An infectious agent transporter role borne by an entity in virtue of the fact that the entity is not a complete organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000421 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000421 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000421 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000421 "Drinking water bears the infectious agent vehicle role, but does not bear either of the subtype roles.") AnnotationAssertion(rdfs:label obo:IDO_0000421 "infectious agent vehicle role"@en) EquivalentClasses(obo:IDO_0000421 ObjectIntersectionOf(obo:IDO_0000417 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:BFO_0000040 ObjectComplementOf(obo:OBI_0100026) ObjectSomeValuesFrom(obo:RO_0001015 obo:IDO_0000596))) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000002))) SubClassOf(obo:IDO_0000421 obo:IDO_0000417) # Class: obo:IDO_0000422 (biological vehicle of infectious agent role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000422 "An infectious agent vehicle role borne by an entity in virtue of the fact that the entity is living or contains living cells other than those that have the infectious disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000422 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000422 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000422 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000422 "Examples include blood, serum, tissue, or fresh produce.") AnnotationAssertion(rdfs:label obo:IDO_0000422 "biological vehicle of infectious agent role"@en) SubClassOf(obo:IDO_0000422 obo:IDO_0000421) # Class: obo:IDO_0000423 (fomite role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000423 "An infectious agent vehicle role borne by an entity in virtue of the fact that the entity is not alive."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000423 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000423 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000423 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000423 "fomite role"@en) SubClassOf(obo:IDO_0000423 obo:IDO_0000421) # Class: obo:IDO_0000424 (reservoir of infectious agent role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000424 "A role borne by a material entity in virtue of the fact that it is a habitat in which infectious agents can persist and multiply and from which they can be transmitted in virtue of prevailing practices of potential hosts."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000424 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000424 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000424 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000424 "If the material entity bearing the reservoir role is an organism, then this organism also bears the host role. The organism may also bear the vector role.") AnnotationAssertion(rdfs:comment obo:IDO_0000424 "The role is realized in a process that has as part life and multiplication processes of an infectious agent and a transmission process. ") AnnotationAssertion(rdfs:label obo:IDO_0000424 "reservoir of infectious agent role"@en) SubClassOf(obo:IDO_0000424 obo:BFO_0000023) SubClassOf(obo:IDO_0000424 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0001015 obo:IDO_0000596)))) DisjointClasses(obo:IDO_0000424 obo:IDO_0000430) DisjointClasses(obo:IDO_0000424 obo:IDO_0000431) DisjointClasses(obo:IDO_0000424 obo:IDO_0000432) DisjointClasses(obo:IDO_0000424 obo:IDO_0000433) DisjointClasses(obo:IDO_0000424 obo:IDO_0000434) DisjointClasses(obo:IDO_0000424 obo:IDO_0000435) DisjointClasses(obo:IDO_0000424 obo:IDO_0000629) DisjointClasses(obo:IDO_0000424 obo:IDO_0000635) # Class: obo:IDO_0000425 (virulence factor disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000425 "A disposition borne by a biological macromolecule produced by a pathogen that is a disposition to undergo processes that increase the pathogen's virulence."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000425 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000425 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000425 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000425 "The virulence factor disposition is typically realized in processes that improve survival of the pathogen in a host, increase the likelihood of transmission to a host, or cause pathological processes in a host.") AnnotationAssertion(rdfs:label obo:IDO_0000425 "virulence factor disposition"@en) SubClassOf(obo:IDO_0000425 obo:BFO_0000016) SubClassOf(obo:IDO_0000425 ObjectSomeValuesFrom(obo:RO_0000052 obo:CHEBI_23367)) DisjointClasses(obo:IDO_0000425 obo:IDO_0000426) DisjointClasses(obo:IDO_0000425 obo:IDO_0000437) DisjointClasses(obo:IDO_0000425 obo:IDO_0000438) DisjointClasses(obo:IDO_0000425 obo:IDO_0000439) DisjointClasses(obo:IDO_0000425 obo:IDO_0000440) DisjointClasses(obo:IDO_0000425 obo:IDO_0000441) DisjointClasses(obo:IDO_0000425 obo:IDO_0000442) DisjointClasses(obo:IDO_0000425 obo:IDO_0000443) DisjointClasses(obo:IDO_0000425 obo:IDO_0000444) DisjointClasses(obo:IDO_0000425 obo:IDO_0000450) DisjointClasses(obo:IDO_0000425 obo:IDO_0000451) DisjointClasses(obo:IDO_0000425 obo:IDO_0000455) DisjointClasses(obo:IDO_0000425 obo:IDO_0000458) DisjointClasses(obo:IDO_0000425 obo:IDO_0000618) DisjointClasses(obo:IDO_0000425 obo:IDO_0000619) DisjointClasses(obo:IDO_0000425 obo:IDO_0000622) DisjointClasses(obo:IDO_0000425 obo:IDO_0000655) DisjointClasses(obo:IDO_0000425 obo:OGMS_0000031) # Class: obo:IDO_0000426 (toxin disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000426 "A disposition to cause I) malfunction of cells, ii) damage to extracellular matrix, or iii) damage of cells to a degree that can result in cell death."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000426 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000426 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000426 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000426 "toxin disposition"@en) SubClassOf(obo:IDO_0000426 obo:BFO_0000016) SubClassOf(obo:IDO_0000426 ObjectSomeValuesFrom(obo:RO_0000052 obo:CHEBI_23367)) DisjointClasses(obo:IDO_0000426 obo:IDO_0000437) DisjointClasses(obo:IDO_0000426 obo:IDO_0000438) DisjointClasses(obo:IDO_0000426 obo:IDO_0000439) DisjointClasses(obo:IDO_0000426 obo:IDO_0000440) DisjointClasses(obo:IDO_0000426 obo:IDO_0000441) DisjointClasses(obo:IDO_0000426 obo:IDO_0000442) DisjointClasses(obo:IDO_0000426 obo:IDO_0000443) DisjointClasses(obo:IDO_0000426 obo:IDO_0000444) DisjointClasses(obo:IDO_0000426 obo:IDO_0000450) DisjointClasses(obo:IDO_0000426 obo:IDO_0000451) DisjointClasses(obo:IDO_0000426 obo:IDO_0000455) DisjointClasses(obo:IDO_0000426 obo:IDO_0000458) DisjointClasses(obo:IDO_0000426 obo:IDO_0000618) DisjointClasses(obo:IDO_0000426 obo:IDO_0000619) DisjointClasses(obo:IDO_0000426 obo:IDO_0000622) DisjointClasses(obo:IDO_0000426 obo:IDO_0000655) DisjointClasses(obo:IDO_0000426 obo:OGMS_0000031) # Class: obo:IDO_0000427 (exotoxin disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000427 "A toxin disposition to damage cells or extracellular matrix by a direct enzymatic process."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000427 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000427 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000427 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000427 "The disposition is realized in a direct enzymatic process that damages host cells or extracellular matrix.") AnnotationAssertion(rdfs:label obo:IDO_0000427 "exotoxin disposition"@en) SubClassOf(obo:IDO_0000427 obo:IDO_0000426) # Class: obo:IDO_0000428 (_obsolete_enterotoxin disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000428 "An exotoxin disposition to damage cells of the host intestinal mucosa."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000428 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000428 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000428 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000428 "_obsolete_enterotoxin disposition"@en) AnnotationAssertion(rdfs:label obo:IDO_0000428 "enterotoxin disposition"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000428 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000428 obo:IDO_0000427) SubClassOf(obo:IDO_0000428 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000429 (endotoxin disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000429 "A toxin disposition that inheres in a protein or protein complex that is a structural component of a pathogen and is released from the pathogen only upon cytolysis."@en) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000429 "A toxin disposition that inheres in a protein or protein complex that is released from a pathogen only upon cytolysis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000429 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000429 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000429 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000429 "_obsolete_endotoxin disposition"@en) AnnotationAssertion(rdfs:label obo:IDO_0000429 "endotoxin disposition"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000429 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000429 obo:IDO_0000426) SubClassOf(obo:IDO_0000429 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000430 (infectious agent portal of entry role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000430 "A role borne by an anatomical entity in virtue of the fact that it serves as the site through which an infectious agent enters a host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000430 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000430 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000430 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000430 "The role is realized in a process by which an infectious agent enters a host.") AnnotationAssertion(rdfs:label obo:IDO_0000430 "infectious agent portal of entry role"@en) SubClassOf(obo:IDO_0000430 obo:BFO_0000023) SubClassOf(obo:IDO_0000430 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:CARO_0000000) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000050 obo:TRANS_0000000))))) DisjointClasses(obo:IDO_0000430 obo:IDO_0000431) DisjointClasses(obo:IDO_0000430 obo:IDO_0000432) DisjointClasses(obo:IDO_0000430 obo:IDO_0000433) DisjointClasses(obo:IDO_0000430 obo:IDO_0000434) DisjointClasses(obo:IDO_0000430 obo:IDO_0000435) DisjointClasses(obo:IDO_0000430 obo:IDO_0000629) DisjointClasses(obo:IDO_0000430 obo:IDO_0000635) # Class: obo:IDO_0000431 (infectious agent portal of exit role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000431 "A role borne by an anatomical entity in virtue of the fact that it serves as the site through which an infectious agent exits a host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000431 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000431 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000431 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000431 "The role is realized in a process by which an infectious agent exists a host.") AnnotationAssertion(rdfs:label obo:IDO_0000431 "infectious agent portal of exit role"@en) SubClassOf(obo:IDO_0000431 obo:BFO_0000023) SubClassOf(obo:IDO_0000431 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:CARO_0000000) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000050 obo:TRANS_0000000))))) DisjointClasses(obo:IDO_0000431 obo:IDO_0000432) DisjointClasses(obo:IDO_0000431 obo:IDO_0000433) DisjointClasses(obo:IDO_0000431 obo:IDO_0000434) DisjointClasses(obo:IDO_0000431 obo:IDO_0000435) DisjointClasses(obo:IDO_0000431 obo:IDO_0000629) DisjointClasses(obo:IDO_0000431 obo:IDO_0000635) # Class: obo:IDO_0000432 (disinfectant role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000432 "A role borne by a material entity in virtue of the fact that it has an antimicrobial disposition and is applied to a non-living entity. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000432 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000432 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000432 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000432 "The role is realized in the killing and/or growth inhibition of microorganisms on the non-living entity.") AnnotationAssertion(rdfs:label obo:IDO_0000432 "disinfectant role"@en) SubClassOf(obo:IDO_0000432 obo:BFO_0000023) SubClassOf(obo:IDO_0000432 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000439))) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502)))))) DisjointClasses(obo:IDO_0000432 obo:IDO_0000433) DisjointClasses(obo:IDO_0000432 obo:IDO_0000434) DisjointClasses(obo:IDO_0000432 obo:IDO_0000435) DisjointClasses(obo:IDO_0000432 obo:IDO_0000629) DisjointClasses(obo:IDO_0000432 obo:IDO_0000635) # Class: obo:IDO_0000433 (antiseptic role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000433 "A role borne by a material entity in virtue of the fact that it has an antimicrobial disposition and is applied to an anatomical entity of a living organism. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000433 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000433 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000433 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000433 "The role is realized in the killing and/or growth inhibition of microorganisms on the anatomical entity. ") AnnotationAssertion(rdfs:label obo:IDO_0000433 "antiseptic role"@en) SubClassOf(obo:IDO_0000433 obo:BFO_0000023) SubClassOf(obo:IDO_0000433 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000439))) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502)))))) DisjointClasses(obo:IDO_0000433 obo:IDO_0000434) DisjointClasses(obo:IDO_0000433 obo:IDO_0000435) DisjointClasses(obo:IDO_0000433 obo:IDO_0000629) DisjointClasses(obo:IDO_0000433 obo:IDO_0000635) # Class: obo:IDO_0000434 (primary infection role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000434 "A role borne by an infectious disorder in virtue of the fact that (1) the host has at least two distinct infectious disorders, where neither arose from the other through metastasis, (2) at the time the infectious disorder was established in the host, the host had no infectious disorder, and (3) the infectious disorder increases the host's susceptibility to infectious disorders."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000434 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000434 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000434 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000434 "The role is realized in a process by which the infectious disorder is established in the host.") AnnotationAssertion(rdfs:label obo:IDO_0000434 "primary infection role"@en) SubClassOf(obo:IDO_0000434 obo:BFO_0000023) SubClassOf(obo:IDO_0000434 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000504)) DisjointClasses(obo:IDO_0000434 obo:IDO_0000435) DisjointClasses(obo:IDO_0000434 obo:IDO_0000629) DisjointClasses(obo:IDO_0000434 obo:IDO_0000635) # Class: obo:IDO_0000435 (secondary infection role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000435 "A role borne by an infectious disorder in virtue of the fact that (1) the host has at least two distinct infectious disorders, where neither arose from the other through metastasis, (2) at the time the infectious disorder was established in the host, the host had a primary infectious disorder, and (3) establishment of the infectious disorder occurs because of increased susceptibility to infectious disorders conferred by the primary infectious disorder."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000435 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000435 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000435 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000435 "The role is realized in a process by which the infectious disorder is established in the host.") AnnotationAssertion(rdfs:label obo:IDO_0000435 "secondary infection role"@en) SubClassOf(obo:IDO_0000435 obo:BFO_0000023) SubClassOf(obo:IDO_0000435 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000504)) DisjointClasses(obo:IDO_0000435 obo:IDO_0000629) DisjointClasses(obo:IDO_0000435 obo:IDO_0000635) # Class: obo:IDO_0000436 (infectious disease) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000436 "A disease whose physical basis is an infectious disorder."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000436 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000436 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000436 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000436 "tranmissible disease"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000436 "The disposition is realized in an infectious disease course.") AnnotationAssertion(rdfs:label obo:IDO_0000436 "infectious disease"@en) EquivalentClasses(obo:IDO_0000436 ObjectIntersectionOf(obo:OGMS_0000031 ObjectSomeValuesFrom(obo:IDO_0000664 obo:IDO_0000504) ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000504))))) ObjectAllValuesFrom(obo:BFO_0000054 obo:IDO_0000495) ObjectAllValuesFrom(obo:IDO_0000664 obo:IDO_0000504) ObjectAllValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000504))))))) SubClassOf(obo:IDO_0000436 obo:OGMS_0000031) # Class: obo:IDO_0000437 (adhesion disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000437 "A disposition borne by a biological macromolecule that is the disposition to participate in adherence to a host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000437 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000437 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000437 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000437 "The disposition is realized in an adherence to host process.") AnnotationAssertion(rdfs:label obo:IDO_0000437 "adhesion disposition"@en) SubClassOf(obo:IDO_0000437 obo:BFO_0000016) SubClassOf(obo:IDO_0000437 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:CHEBI_23367) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0044406))) DisjointClasses(obo:IDO_0000437 obo:IDO_0000438) DisjointClasses(obo:IDO_0000437 obo:IDO_0000439) DisjointClasses(obo:IDO_0000437 obo:IDO_0000440) DisjointClasses(obo:IDO_0000437 obo:IDO_0000441) DisjointClasses(obo:IDO_0000437 obo:IDO_0000442) DisjointClasses(obo:IDO_0000437 obo:IDO_0000443) DisjointClasses(obo:IDO_0000437 obo:IDO_0000444) DisjointClasses(obo:IDO_0000437 obo:IDO_0000450) DisjointClasses(obo:IDO_0000437 obo:IDO_0000451) DisjointClasses(obo:IDO_0000437 obo:IDO_0000455) DisjointClasses(obo:IDO_0000437 obo:IDO_0000458) DisjointClasses(obo:IDO_0000437 obo:IDO_0000618) DisjointClasses(obo:IDO_0000437 obo:IDO_0000619) DisjointClasses(obo:IDO_0000437 obo:IDO_0000622) DisjointClasses(obo:IDO_0000437 obo:IDO_0000655) DisjointClasses(obo:IDO_0000437 obo:OGMS_0000031) # Class: obo:IDO_0000438 (invasion disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000438 "A disposition borne by a biological macromolecule that is the disposition to facilitate breach of host epithelial barriers or entry into and survival in host cells."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000438 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000438 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000438 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000438 "A molecule with the invasion disposition is referred to as an invasion factor or invasin.") AnnotationAssertion(rdfs:label obo:IDO_0000438 "invasion disposition"@en) SubClassOf(obo:IDO_0000438 obo:BFO_0000016) SubClassOf(obo:IDO_0000438 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:CHEBI_23367) ObjectAllValuesFrom(obo:BFO_0000054 ObjectSomeValuesFrom(obo:RO_0002213 obo:GO_0044411)))) DisjointClasses(obo:IDO_0000438 obo:IDO_0000439) DisjointClasses(obo:IDO_0000438 obo:IDO_0000440) DisjointClasses(obo:IDO_0000438 obo:IDO_0000441) DisjointClasses(obo:IDO_0000438 obo:IDO_0000442) DisjointClasses(obo:IDO_0000438 obo:IDO_0000443) DisjointClasses(obo:IDO_0000438 obo:IDO_0000444) DisjointClasses(obo:IDO_0000438 obo:IDO_0000450) DisjointClasses(obo:IDO_0000438 obo:IDO_0000451) DisjointClasses(obo:IDO_0000438 obo:IDO_0000455) DisjointClasses(obo:IDO_0000438 obo:IDO_0000458) DisjointClasses(obo:IDO_0000438 obo:IDO_0000618) DisjointClasses(obo:IDO_0000438 obo:IDO_0000619) DisjointClasses(obo:IDO_0000438 obo:IDO_0000622) DisjointClasses(obo:IDO_0000438 obo:IDO_0000655) DisjointClasses(obo:IDO_0000438 obo:OGMS_0000031) # Class: obo:IDO_0000439 (antimicrobial disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000439 "A disposition to kill or inhibit the development or reproduction of microorganisms."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000439 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000439 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000439 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000439 "Some instances might be functions, depending on whether the bearer is something that exists and is used for the purpose (alcohol) or something that was designed for the purpose (pine sol). Entities that kill microorganisms are referred to as microbicidal; entities that inhibit the growth of microorganisms are referred to as microbistatic.") AnnotationAssertion(rdfs:comment obo:IDO_0000439 "The disposition is realized in the killing or inhibition of microorganisms.") AnnotationAssertion(rdfs:label obo:IDO_0000439 "antimicrobial disposition"@en) SubClassOf(obo:IDO_0000439 obo:BFO_0000016) SubClassOf(obo:IDO_0000439 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502)))))) DisjointClasses(obo:IDO_0000439 obo:IDO_0000444) DisjointClasses(obo:IDO_0000439 obo:IDO_0000450) DisjointClasses(obo:IDO_0000439 obo:IDO_0000451) DisjointClasses(obo:IDO_0000439 obo:IDO_0000455) DisjointClasses(obo:IDO_0000439 obo:IDO_0000458) DisjointClasses(obo:IDO_0000439 obo:IDO_0000618) DisjointClasses(obo:IDO_0000439 obo:IDO_0000619) DisjointClasses(obo:IDO_0000439 obo:IDO_0000622) DisjointClasses(obo:IDO_0000439 obo:IDO_0000655) DisjointClasses(obo:IDO_0000439 obo:OGMS_0000031) # Class: obo:IDO_0000440 (antiviral disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000440 "A disposition to kill or inhibit the lifecycle of viruses."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000440 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000440 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000440 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000440 "antiviral disposition"@en) SubClassOf(obo:IDO_0000440 obo:BFO_0000016) SubClassOf(obo:IDO_0000440 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(obo:GO_0048525 ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944)))))) DisjointClasses(obo:IDO_0000440 obo:IDO_0000441) DisjointClasses(obo:IDO_0000440 obo:IDO_0000442) DisjointClasses(obo:IDO_0000440 obo:IDO_0000443) DisjointClasses(obo:IDO_0000440 obo:IDO_0000444) DisjointClasses(obo:IDO_0000440 obo:IDO_0000450) DisjointClasses(obo:IDO_0000440 obo:IDO_0000451) DisjointClasses(obo:IDO_0000440 obo:IDO_0000455) DisjointClasses(obo:IDO_0000440 obo:IDO_0000458) DisjointClasses(obo:IDO_0000440 obo:IDO_0000618) DisjointClasses(obo:IDO_0000440 obo:IDO_0000619) DisjointClasses(obo:IDO_0000440 obo:IDO_0000622) DisjointClasses(obo:IDO_0000440 obo:IDO_0000655) DisjointClasses(obo:IDO_0000440 obo:OGMS_0000031) # Class: obo:IDO_0000441 (antifungal disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000441 "A disposition to kill or inhibit the development or reproduction of fungal organisms."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000441 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000441 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000441 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000441 "antifungal disposition"@en) SubClassOf(obo:IDO_0000441 obo:BFO_0000016) SubClassOf(obo:IDO_0000441 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502)))))) DisjointClasses(obo:IDO_0000441 obo:IDO_0000442) DisjointClasses(obo:IDO_0000441 obo:IDO_0000443) DisjointClasses(obo:IDO_0000441 obo:IDO_0000444) DisjointClasses(obo:IDO_0000441 obo:IDO_0000450) DisjointClasses(obo:IDO_0000441 obo:IDO_0000451) DisjointClasses(obo:IDO_0000441 obo:IDO_0000455) DisjointClasses(obo:IDO_0000441 obo:IDO_0000458) DisjointClasses(obo:IDO_0000441 obo:IDO_0000618) DisjointClasses(obo:IDO_0000441 obo:IDO_0000619) DisjointClasses(obo:IDO_0000441 obo:IDO_0000622) DisjointClasses(obo:IDO_0000441 obo:IDO_0000655) DisjointClasses(obo:IDO_0000441 obo:OGMS_0000031) # Class: obo:IDO_0000442 (antibacterial disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000442 "A disposition to kill or inhibit the reproduction of bacteria."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000442 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000442 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000442 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000442 "antibiotic disposition") AnnotationAssertion(rdfs:label obo:IDO_0000442 "antibacterial disposition"@en) SubClassOf(obo:IDO_0000442 obo:BFO_0000016) SubClassOf(obo:IDO_0000442 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0043093)))))) DisjointClasses(obo:IDO_0000442 obo:IDO_0000443) DisjointClasses(obo:IDO_0000442 obo:IDO_0000444) DisjointClasses(obo:IDO_0000442 obo:IDO_0000450) DisjointClasses(obo:IDO_0000442 obo:IDO_0000451) DisjointClasses(obo:IDO_0000442 obo:IDO_0000455) DisjointClasses(obo:IDO_0000442 obo:IDO_0000458) DisjointClasses(obo:IDO_0000442 obo:IDO_0000618) DisjointClasses(obo:IDO_0000442 obo:IDO_0000619) DisjointClasses(obo:IDO_0000442 obo:IDO_0000622) DisjointClasses(obo:IDO_0000442 obo:IDO_0000655) DisjointClasses(obo:IDO_0000442 obo:OGMS_0000031) # Class: obo:IDO_0000443 (antiparasitic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000443 "A disposition to kill or inhibit the development or reproduction of eukaryotic parasites."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000443 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000443 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000443 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000443 "In the term name, we are using parasite in the medical sense of eukaryotic organisms that are parasitic in humans.") AnnotationAssertion(rdfs:label obo:IDO_0000443 "antiparasitic disposition"@en) SubClassOf(obo:IDO_0000443 obo:BFO_0000016) SubClassOf(obo:IDO_0000443 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectUnionOf(ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502)))))) DisjointClasses(obo:IDO_0000443 obo:IDO_0000444) DisjointClasses(obo:IDO_0000443 obo:IDO_0000450) DisjointClasses(obo:IDO_0000443 obo:IDO_0000451) DisjointClasses(obo:IDO_0000443 obo:IDO_0000455) DisjointClasses(obo:IDO_0000443 obo:IDO_0000458) DisjointClasses(obo:IDO_0000443 obo:IDO_0000618) DisjointClasses(obo:IDO_0000443 obo:IDO_0000619) DisjointClasses(obo:IDO_0000443 obo:IDO_0000622) DisjointClasses(obo:IDO_0000443 obo:IDO_0000655) DisjointClasses(obo:IDO_0000443 obo:OGMS_0000031) # Class: obo:IDO_0000444 (protective resistance) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000444 "A disposition that inheres in a material entity in virtue of the fact that the entity has a part (e.g. a gene product), which itself has a disposition to mitigate damage to the entity."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000444 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000444 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000444 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000444 "Examples include the following: CCR5 mutations protect T cells from HIV invasion. A tumor cell's resistance to chemotherapy protects the cell from damage by the drug (although this harms the patient). An insect's resistance to insecticide protects it from the insecticide.") AnnotationAssertion(rdfs:comment obo:IDO_0000444 "The disposition is realized in a process that mitigates damage to the bearer and has the part as a participant.") AnnotationAssertion(rdfs:label obo:IDO_0000444 "protective resistance"@en) SubClassOf(obo:IDO_0000444 obo:BFO_0000016) SubClassOf(obo:IDO_0000444 ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040)) DisjointClasses(obo:IDO_0000444 obo:IDO_0000450) DisjointClasses(obo:IDO_0000444 obo:IDO_0000451) DisjointClasses(obo:IDO_0000444 obo:IDO_0000455) DisjointClasses(obo:IDO_0000444 obo:IDO_0000458) DisjointClasses(obo:IDO_0000444 obo:IDO_0000618) DisjointClasses(obo:IDO_0000444 obo:IDO_0000619) DisjointClasses(obo:IDO_0000444 obo:IDO_0000622) DisjointClasses(obo:IDO_0000444 obo:IDO_0000655) DisjointClasses(obo:IDO_0000444 obo:OGMS_0000031) # Class: obo:IDO_0000445 (resistance to drug) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000445 "A protective resistance that mitigates the damaging effects of a drug."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000445 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000445 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000445 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000445 "drug resistance"@en) AnnotationAssertion(rdfs:label obo:IDO_0000445 "resistance to drug"@en) SubClassOf(obo:IDO_0000445 obo:IDO_0000444) DisjointClasses(obo:IDO_0000445 obo:IDO_0000446) # Class: obo:IDO_0000446 (resistance to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000446 "A protective resistance that inheres in an organism and mitigates the damaging effects on that organism of an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000446 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000446 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000446 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000446 "resistance to infectious agent"@en) SubClassOf(obo:IDO_0000446 obo:IDO_0000444) SubClassOf(obo:IDO_0000446 ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026)) # Class: obo:IDO_0000447 (herd immunity to infectious organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000447 "A collective resistance disposition that inheres in an organism population in virtue of the fact that the proportion of the population with immunity to an infectious agent is high resulting in a low number of transmissions from hosts in the population to susceptible individuals in the population and thereby mitigating the damaging effects of the infectious agent on the population."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000447 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000447 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000447 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000447 "herd immunity to infectious organism"@en) EquivalentClasses(obo:IDO_0000447 ObjectIntersectionOf(obo:IDO_0000588 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509) ObjectAllValuesFrom(obo:BFO_0000054 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000448)))) SubClassOf(obo:IDO_0000447 obo:IDO_0000588) # Class: obo:IDO_0000448 (immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000448 "A resistance to infectious agent that inheres in an organism in virtue of immune system components in the extended organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000448 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000448 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000448 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000448 "protective immunity to infectious agent"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000448 "We don't specify that immunity results from prior exposure, because we want to include innate immunity. In addition, for adaptive immunity, there could be some low level immunity even in a primary immune response.") AnnotationAssertion(rdfs:label obo:IDO_0000448 "immunity to infectious agent"@en) SubClassOf(obo:IDO_0000448 obo:IDO_0000446) # Class: obo:IDO_0000449 (sterilizing immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000449 "An immunity to infectious agent that results in elimination of the infectious agent from the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000449 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000449 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000449 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000449 "Sterilizing immunity is typically conferred by neutralizing antibodies.") AnnotationAssertion(rdfs:label obo:IDO_0000449 "sterilizing immunity to infectious agent"@en) SubClassOf(obo:IDO_0000449 obo:IDO_0000448) # Class: obo:IDO_0000450 (pathogenic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000450 "A disposition to initiate processes that result in a disorder."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000450 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000450 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000450 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000450 "pathogenicity"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000450 "A pathogenic disposition is realized in processes that create a disorder.") AnnotationAssertion(rdfs:comment obo:IDO_0000450 "The use of 'initiates' is intended to convey that a pathogenic disposition is realized when processes resulting in a disorder begin because of some action on the part of the bearer of the disposition. By this interpretation of 'initiates', disorder-causing entities such as glass, UV light, and toxins do not have a pathogenic disposition.") AnnotationAssertion(rdfs:label obo:IDO_0000450 "pathogenic disposition"@en) SubClassOf(obo:IDO_0000450 obo:BFO_0000016) SubClassOf(obo:IDO_0000450 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0002297 obo:OGMS_0000045))))) DisjointClasses(obo:IDO_0000450 obo:IDO_0000451) DisjointClasses(obo:IDO_0000450 obo:IDO_0000455) DisjointClasses(obo:IDO_0000450 obo:IDO_0000458) DisjointClasses(obo:IDO_0000450 obo:IDO_0000618) DisjointClasses(obo:IDO_0000450 obo:IDO_0000619) DisjointClasses(obo:IDO_0000450 obo:IDO_0000622) DisjointClasses(obo:IDO_0000450 obo:IDO_0000655) DisjointClasses(obo:IDO_0000450 obo:OGMS_0000031) # Class: obo:IDO_0000451 (invasive disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000451 "A disposition borne by an infectious agent that is the disposition to penetrate the epithelial barriers of an organism of another Species."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000451 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000451 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000451 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000451 "invasive disposition"@en) SubClassOf(obo:IDO_0000451 obo:BFO_0000016) SubClassOf(obo:IDO_0000451 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000596) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0044411))) DisjointClasses(obo:IDO_0000451 obo:IDO_0000455) DisjointClasses(obo:IDO_0000451 obo:IDO_0000458) DisjointClasses(obo:IDO_0000451 obo:IDO_0000618) DisjointClasses(obo:IDO_0000451 obo:IDO_0000619) DisjointClasses(obo:IDO_0000451 obo:IDO_0000622) DisjointClasses(obo:IDO_0000451 obo:IDO_0000655) DisjointClasses(obo:IDO_0000451 obo:OGMS_0000031) # Class: obo:IDO_0000452 (infectious disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000452 "A pathogenic disposition that inheres in an organism and is a disposition for that organism (1) to be transmitted to a host, (2) to establish itself in the host, (3) to initiate processes that result in a disorder in the host, and (4) to become part of that disorder."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000452 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000452 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000452 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000452 "The disposition is realized in a process that has as part a transmission process, an establishment in host process, a process that results in a disorder, and a process in which the bearer of the disposition becomes part of that disorder. The infectious disposition has a complementary disposition that inheres in an organism and is the capability to be host to an organism with an infectious disposition and to undergo processes initiated by that infectious organism that result in a disorder.") AnnotationAssertion(rdfs:label obo:IDO_0000452 "infectious disposition"@en) SubClassOf(obo:IDO_0000452 obo:IDO_0000450) SubClassOf(obo:IDO_0000452 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000625) ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000626) ObjectSomeValuesFrom(obo:BFO_0000051 obo:TRANS_0000000))))) # Class: obo:IDO_0000453 (zoonotic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000453 "An infectious disposition that is the disposition to be transmitted from an infected, non-human host to a human host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000453 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000453 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000453 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000453 "An infectious disease associated with an infectious agent that bears the zoonotic disposition is referred to as a zoonosis.") AnnotationAssertion(rdfs:label obo:IDO_0000453 "zoonotic disposition"@en) SubClassOf(obo:IDO_0000453 obo:IDO_0000452) # Class: obo:IDO_0000454 (reverse zoonotic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000454 "An infectious disposition that is the disposition to be transmitted from an infected, human host to a non-human host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000454 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000454 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000454 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000454 "An infectious disease associated with an infectious agent that bears the reverse zoonotic disposition is referred to as a reverse zoonosis.") AnnotationAssertion(rdfs:label obo:IDO_0000454 "reverse zoonotic disposition"@en) SubClassOf(obo:IDO_0000454 obo:IDO_0000452) # Class: obo:IDO_0000455 (collective disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000455 "A disposition that inheres in a collection of entities in virtue of the individual dispositions of the constituents of that collection. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000455 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000455 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000455 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000455 "\"... in virtue of the individual dispositions of the contstituents\" is intended to capture the fact that the collective disposition results from the combination of the individual dispositions. It is not necessary that every constituent of the aggregate have a relevant individual disposition.") AnnotationAssertion(rdfs:comment obo:IDO_0000455 "The disposition is realized in a process that has as part realizations of some of the individual dispositions.") AnnotationAssertion(rdfs:label obo:IDO_0000455 "collective disposition"@en) SubClassOf(obo:IDO_0000455 obo:BFO_0000016) SubClassOf(obo:IDO_0000455 ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000027)) DisjointClasses(obo:IDO_0000455 obo:IDO_0000458) DisjointClasses(obo:IDO_0000455 obo:IDO_0000618) DisjointClasses(obo:IDO_0000455 obo:IDO_0000619) DisjointClasses(obo:IDO_0000455 obo:IDO_0000622) DisjointClasses(obo:IDO_0000455 obo:IDO_0000655) DisjointClasses(obo:IDO_0000455 obo:OGMS_0000031) # Class: obo:IDO_0000456 (immunosuppressed organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000456 "An organism that is experiencing pregnancy-induced or pathologic immunosuppression."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000456 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000456 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000456 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000456 "immunosuppressed organism"@en) EquivalentClasses(obo:IDO_0000456 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 ObjectUnionOf(obo:IDO_0000612 obo:IDO_0000644)))) SubClassOf(obo:IDO_0000456 obo:OBI_0100026) DisjointClasses(obo:IDO_0000456 obo:IDO_0000457) # Class: obo:IDO_0000457 (immunocompetent organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000457 "An organism that has immunocompetence."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000457 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000457 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000457 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000457 "immunocompetent organism"@en) EquivalentClasses(obo:IDO_0000457 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000618))) SubClassOf(obo:IDO_0000457 obo:OBI_0100026) DisjointClasses(obo:IDO_0000457 obo:IDO_0000589) # Class: obo:IDO_0000458 (contagiousness) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000458 "A disposition that inheres in a host of infectious agent and is a disposition to transmit infectious agents to organisms of the same Species through casual contact with a high likelihood of realization."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000458 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000458 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000458 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000458 "Highly contagious infections, those with a relatively high likelihood of spread, are referred to as contagious and are those for which spread is likely as a result of day-to-day activities of the host.") AnnotationAssertion(rdfs:comment obo:IDO_0000458 "The disposition is realized in a horizontal transmission process.") AnnotationAssertion(rdfs:label obo:IDO_0000458 "contagiousness"@en) SubClassOf(obo:IDO_0000458 obo:BFO_0000016) SubClassOf(obo:IDO_0000458 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000537) ObjectAllValuesFrom(obo:BFO_0000054 obo:IDO_0000656))) DisjointClasses(obo:IDO_0000458 obo:IDO_0000618) DisjointClasses(obo:IDO_0000458 obo:IDO_0000619) DisjointClasses(obo:IDO_0000458 obo:IDO_0000622) DisjointClasses(obo:IDO_0000458 obo:IDO_0000655) DisjointClasses(obo:IDO_0000458 obo:OGMS_0000031) # Class: obo:IDO_0000459 (colonized host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000459 "An organism that contains a colony in or on its extended organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000459 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000459 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000459 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000459 "colonized host"@en) EquivalentClasses(obo:IDO_0000459 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000615))))) SubClassOf(obo:IDO_0000459 obo:OBI_0100026) # Class: obo:IDO_0000460 (infected organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000460 "An organism that has an infection in or on its extended organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000460 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000460 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000460 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000460 "infected organism"@en) EquivalentClasses(obo:IDO_0000460 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000586))))) SubClassOf(obo:IDO_0000460 obo:OBI_0100026) # Class: obo:IDO_0000461 (co-infected organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000461 "An organism that has two infections with distinct Species of infectious agents."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000461 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000461 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000461 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000461 "co-infected organism"@en) SubClassOf(obo:IDO_0000461 obo:IDO_0000460) # Class: obo:IDO_0000462 (_obsolete_symptomatic host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000462 "A host exhibiting disease symptoms."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000462 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000462 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000462 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000462 "_obsolete_symptomatic host"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000462 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000462 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000463 (infectious agent transmissibility) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000463 "A quality that inheres in an infectious agent and is the likelihood that the infectious agent will undergo a horizontal transmission process."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000463 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000463 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000463 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000463 "The transmissibility quality varies with both the type of organism being transmitted and the type of organism to which transmission is happening.") AnnotationAssertion(rdfs:label obo:IDO_0000463 "infectious agent transmissibility"@en) SubClassOf(obo:IDO_0000463 obo:BFO_0000019) SubClassOf(obo:IDO_0000463 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000596)) # Class: obo:IDO_0000464 (infectivity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000464 "A quality that inheres in an infectious agent and is the liklihood that the infectious disposition will be realized upon exposure of a susceptible organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000464 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000464 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000464 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000464 "This quality is measured by the proportion of exposed who become infected.") AnnotationAssertion(rdfs:label obo:IDO_0000464 "infectivity"@en) SubClassOf(obo:IDO_0000464 obo:BFO_0000019) SubClassOf(obo:IDO_0000464 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000466 (virulence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000466 "A quality that inheres in an infectious agent and is the degree to which realizations of the infectious disease caused by the infectious agent become severe or fatal. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000466 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000466 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000466 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000466 "This quality is measured by the proportion of clinically apparent cases that are severe or fatal.") AnnotationAssertion(rdfs:label obo:IDO_0000466 "virulence"@en) SubClassOf(obo:IDO_0000466 obo:BFO_0000019) SubClassOf(obo:IDO_0000466 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000596)) # Class: obo:IDO_0000467 (susceptibility) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000467 "A quality that inheres in an entity and is the degree to which it can be harmed by another entity."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000467 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000467 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000467 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000467 "Low susceptibility is often referred to as resistance. In this sense, resistance is a quality.") AnnotationAssertion(rdfs:label obo:IDO_0000467 "susceptibility"@en) SubClassOf(obo:IDO_0000467 obo:BFO_0000019) SubClassOf(obo:IDO_0000467 ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040)) # Class: obo:IDO_0000468 (susceptibility to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000468 "A susceptibility that inheres in an organism and is the degree to which it can be harmed by an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000468 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000468 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000468 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000468 "susceptibility to infectious agent"@en) SubClassOf(obo:IDO_0000468 obo:IDO_0000467) SubClassOf(obo:IDO_0000468 ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026)) DisjointClasses(obo:IDO_0000468 obo:IDO_0000469) # Class: obo:IDO_0000469 (drug susceptibility) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000469 "A susceptibility that is the degree to which an entity can be harmed or inhibited from surviving by a drug."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000469 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000469 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000469 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000469 "drug susceptibility"@en) SubClassOf(obo:IDO_0000469 obo:IDO_0000467) # Class: obo:IDO_0000470 (drug susceptibility of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000470 "A drug susceptibility that inheres in an infectious agent and is the degree to which the infectious agent can be harmed or inhibited from surviving by a drug."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000470 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000470 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000470 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000470 "drug susceptibility of infectious agent"@en) SubClassOf(obo:IDO_0000470 obo:IDO_0000469) SubClassOf(obo:IDO_0000470 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000596)) # Class: obo:IDO_0000471 (complex infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000471 "An infection comprised of infectious organisms from different Species."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000471 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000471 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000471 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000471 "mixed infection"@en) AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000471 "polymicrobial infection"@en) AnnotationAssertion(rdfs:label obo:IDO_0000471 "complex infection"@en) SubClassOf(obo:IDO_0000471 obo:IDO_0000586) # Class: obo:IDO_0000472 (extracellular infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000472 "An infection for which the infectious agents that are part of the infection persist in the extracellular space of the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000472 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000472 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000472 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000472 "extracellular infection"@en) EquivalentClasses(obo:IDO_0000472 ObjectIntersectionOf(obo:IDO_0000586 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectComplementOf(ObjectSomeValuesFrom(obo:RO_0001025 obo:CL_0000000)))))) SubClassOf(obo:IDO_0000472 obo:IDO_0000586) DisjointClasses(obo:IDO_0000472 obo:IDO_0000473) # Class: obo:IDO_0000473 (intracellular infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000473 "An infection for which the infectious agents that are part of the infection persist inside host cells."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000473 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000473 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000473 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000473 "intracellular infection"@en) EquivalentClasses(obo:IDO_0000473 ObjectIntersectionOf(obo:IDO_0000586 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0001025 obo:CL_0000000))))) SubClassOf(obo:IDO_0000473 obo:IDO_0000586) DisjointClasses(obo:IDO_0000473 obo:IDO_0000505) DisjointClasses(obo:IDO_0000473 obo:IDO_0000506) # Class: obo:IDO_0000474 (systemic infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000474 "An infection for which the infectious agents that are part of the infection are distributed throughout the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000474 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000474 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000474 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000474 "systemic infection"@en) SubClassOf(obo:IDO_0000474 obo:IDO_0000586) DisjointClasses(obo:IDO_0000474 obo:IDO_0000475) # Class: obo:IDO_0000475 (local infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000475 "An infection for which the infectious agents that are part of the infection are limited to a relatively small area of the host's body."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000475 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000475 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000475 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000475 "local infection"@en) SubClassOf(obo:IDO_0000475 obo:IDO_0000586) DisjointClasses(obo:IDO_0000475 obo:IDO_0000506) # Class: obo:IDO_0000476 (focal infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000476 "A local infection for which symptoms are observed in parts of the host's extended organism that are distant from the infection."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000476 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000476 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000476 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000476 "focal infection"@en) SubClassOf(obo:IDO_0000476 obo:IDO_0000475) # Class: obo:IDO_0000477 (acute infectious disease course) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000477 "An infectious disease course that begins soon after infection is established and progresses rapidly to severe stages."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000477 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000477 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000477 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000477 "acute infectious disease course"@en) SubClassOf(obo:IDO_0000477 obo:IDO_0000495) # Class: obo:IDO_0000478 (_obsolete_chronic quality of infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000478 "A quality that inheres in an infection in virtue of the fact that the infection persists for an extended period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000478 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000478 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000478 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000478 "persistent infection"@en) AnnotationAssertion(rdfs:label obo:IDO_0000478 "_obsolete_chronic quality of infection"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000478 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000478 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000479 (infectious disease incidence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000479 "A quality that inheres in an organism population and is the number of realizations of an infectious disease for which the infectious disease course begins during a specified period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000479 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000479 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000479 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000479 "A particular instance of infectious disease incidence will depend on a type of infectious disease, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.") AnnotationAssertion(rdfs:label obo:IDO_0000479 "infectious disease incidence"@en) SubClassOf(obo:IDO_0000479 obo:BFO_0000019) SubClassOf(obo:IDO_0000479 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000480 (infection incidence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000480 "A quality that inheres in an organism population and is the number of organisms in the population that become infected with an infectious agent during a specified period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000480 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000480 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000480 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000480 "A particular instance of infection incidence will depend on a type of infectious agent, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.") AnnotationAssertion(rdfs:label obo:IDO_0000480 "infection incidence"@en) SubClassOf(obo:IDO_0000480 obo:BFO_0000019) SubClassOf(obo:IDO_0000480 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000481 (infectious disease incidence proportion) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000481 "A quality that inheres in an organism population and is the proportion of members of the population not experiencing an infectious disease course at the beginning of a specified period of time and in whom the infectious disease begins during the specified period of time. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000481 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000481 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000481 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000481 "cumulative incidence of infectious disease"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000481 "An instance of infectious disease incidence proportion is measured by dividing a measure of an instance of infectious disease incidence by the number of members of the population in which the infectious disease course had not begun at the beginning of the specified period of time over which the incidence was measured.") AnnotationAssertion(rdfs:label obo:IDO_0000481 "infectious disease incidence proportion"@en) SubClassOf(obo:IDO_0000481 obo:BFO_0000019) SubClassOf(obo:IDO_0000481 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000482 (infection incidence proportion) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000482 "A quality that inheres in an organism population and is the proportion of members of the population not infected at the beginning of a specified period of time who become infected during the specified period of time. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000482 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000482 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000482 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000482 "cumulative incidence of infection"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000482 "An instance of infection incidence proportion is measured by dividing a measure of an instance of infection incidence by the number of members of the population not infected at the beginning of the specified period of time over which the incidence was measured.") AnnotationAssertion(rdfs:label obo:IDO_0000482 "infection incidence proportion"@en) SubClassOf(obo:IDO_0000482 obo:BFO_0000019) SubClassOf(obo:IDO_0000482 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000483 (infectious disease incidence rate) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000483 "A quality that inheres in an organism population and is the infectious disease incidence proportion per unit time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000483 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000483 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000483 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000483 "An instance of infectious disease incidence rate is measured by dividing a measure of an instance of the infectious disease incidence proportion by the length of the period of time over which the incidence was measured.") AnnotationAssertion(rdfs:label obo:IDO_0000483 "infectious disease incidence rate"@en) SubClassOf(obo:IDO_0000483 obo:BFO_0000019) SubClassOf(obo:IDO_0000483 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000484 (infection incidence rate) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000484 "A quality that inheres in an organism population and is the infection incidence proportion per unit time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000484 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000484 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000484 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000484 "An instance of infection incidence rate is measured by dividing a measure of an instance of infection incidence proportion by the length of the period of time over which the incidence was measured.") AnnotationAssertion(rdfs:label obo:IDO_0000484 "infection incidence rate"@en) SubClassOf(obo:IDO_0000484 obo:BFO_0000019) SubClassOf(obo:IDO_0000484 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000485 (infectious disease prevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000485 "A quality that inheres in an organism population and is the number of realizations of an infectious disease in the population at a specified time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000485 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000485 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000485 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000485 "Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease prevalence will depend on a type of infectious disease, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.") AnnotationAssertion(rdfs:label obo:IDO_0000485 "infectious disease prevalence"@en) SubClassOf(obo:IDO_0000485 obo:BFO_0000019) SubClassOf(obo:IDO_0000485 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000486 (infection prevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000486 "A quality that inheres in an organism population and is the number of organisms in the population infected with an infectious agent at a specified time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000486 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000486 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000486 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000486 "Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infection prevalence will depend on a type of infectious agent, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.") AnnotationAssertion(rdfs:label obo:IDO_0000486 "infection prevalence"@en) SubClassOf(obo:IDO_0000486 obo:BFO_0000019) SubClassOf(obo:IDO_0000486 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000487 (infectious disease lifetime prevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000487 "A quality that inheres in an organism population and is the number of organisms in the population who have, at any point during their lives, been bearers of an infectious disease and experienced realization of the disease."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000487 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000487 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000487 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000487 "Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease lifetime prevalence will depend on a type of infectious disease and a population. Actual measures of prevalence are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics.") AnnotationAssertion(rdfs:label obo:IDO_0000487 "infectious disease lifetime prevalence"@en) SubClassOf(obo:IDO_0000487 obo:BFO_0000019) SubClassOf(obo:IDO_0000487 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000488 (infectious agent seroprevalence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000488 "A quality that inheres in an organism population and is the number of organisms in the population that have antibody specific for an infectious agent in their serum at a specified time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000488 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000488 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000488 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000488 "Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious agent seroprevalence will depend on a type of infectious agent and a population. Actual measures of seroprevalence are based only on tested individuals and usually specify a geographic location. Other constraints may include population demographics.") AnnotationAssertion(rdfs:label obo:IDO_0000488 "infectious agent seroprevalence"@en) SubClassOf(obo:IDO_0000488 obo:BFO_0000019) SubClassOf(obo:IDO_0000488 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000489 (infectious disease mortality rate) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000489 "A quality that inheres in an organism population and is the per capita number of deaths in the population resulting from an infectious disease over a specified period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000489 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000489 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000489 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000489 "A particular instance of infectious disease mortality rate will depend on a type of infectious disease and a population. Actual measures of mortality rate are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics. Mortality rate is typically expressed in units of deaths per 1000 individuals per year.") AnnotationAssertion(rdfs:label obo:IDO_0000489 "infectious disease mortality rate"@en) SubClassOf(obo:IDO_0000489 obo:BFO_0000019) SubClassOf(obo:IDO_0000489 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000490 (infectious disease endemicity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000490 "A quality that inheres in an organism population in virtue of the fact that infections of the type that causes an infectious disease are maintained in the population via intra-population transmission or by transmission from a local reservoir."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000490 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000490 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000490 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000490 "A particular instance of infectious disease endemicity will depend on a type of infectious agent and a population. The population may be specified by temporal, geographic, or demographic constraints. Infectious diseases that are typical or common to a particular population are referred to as endemic.") AnnotationAssertion(rdfs:label obo:IDO_0000490 "infectious disease endemicity"@en) SubClassOf(obo:IDO_0000490 obo:BFO_0000019) SubClassOf(obo:IDO_0000490 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000491 (infectious disease endemic level) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000491 "An infectious disease prevalence that is typical for an infectious disease in an organism population. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000491 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000491 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000491 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000491 "Infectious disease endemic level is relational to previous prevalences of the disease.") AnnotationAssertion(rdfs:label obo:IDO_0000491 "infectious disease endemic level"@en) SubClassOf(obo:IDO_0000491 obo:IDO_0000485) # Class: obo:IDO_0000492 (infectious disease endemic rate) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000492 "An infectious disease incidence rate that is typical for an infectious disease in an organism population. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000492 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000492 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000492 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000492 "Infectious disease endemic rate is relational to previous infectious disease incidence rates of the disease.") AnnotationAssertion(rdfs:label obo:IDO_0000492 "infectious disease endemic rate"@en) SubClassOf(obo:IDO_0000492 obo:IDO_0000483) # Class: obo:IDO_0000493 (infectious disease hyper-endemicity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000493 "An infectious disease endemicity that inheres in an organism population in virtue of the fact that the infectious disease endemic level for an infectious disease is persistently high in the population. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000493 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000493 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000493 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000493 "Hyper-endemic infectious diseases may have high endemic levels only in certain seasons. A hyper-endemic disease affects all age groups equally.") AnnotationAssertion(rdfs:label obo:IDO_0000493 "infectious disease hyper-endemicity"@en) SubClassOf(obo:IDO_0000493 obo:IDO_0000490) # Class: obo:IDO_0000494 (infectious disease sporadicity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000494 "A quality that inheres in an organism population by virtue of the fact that realizations of an infectious disease occur in the population with a fluctuating prevalence."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000494 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000494 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000494 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000494 "Sporadic quality of infectious disease is relational to previous prevalence of the disease.") AnnotationAssertion(rdfs:label obo:IDO_0000494 "infectious disease sporadicity"@en) SubClassOf(obo:IDO_0000494 obo:BFO_0000019) SubClassOf(obo:IDO_0000494 ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000509)) # Class: obo:IDO_0000495 (infectious disease course) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000495 "A disease course that is the realization of an infectious disease."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000495 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000495 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000495 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000495 "infectious disease course"@en) EquivalentClasses(obo:IDO_0000495 ObjectIntersectionOf(obo:OGMS_0000063 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000436))) SubClassOf(obo:IDO_0000495 obo:OGMS_0000063) # Class: obo:IDO_0000496 (long-term non-progressing infectious disease course) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000496 "A chronic infectious disease course that does not progress to severe stages for a long period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000496 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000496 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000496 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000496 "long-term non-progressing infectious disease course"@en) SubClassOf(obo:IDO_0000496 obo:IDO_0000590) # Class: obo:IDO_0000497 (immunization against infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000497 "A process by which an organism acquires immunity to an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000497 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000497 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000497 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000497 "immunization against infectious agent"@en) EquivalentClasses(obo:IDO_0000497 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0002234 ObjectSomeValuesFrom(ObjectInverseOf(obo:IDO_0000664) obo:IDO_0000448)))) SubClassOf(obo:IDO_0000497 obo:BFO_0000015) # Class: obo:IDO_0000498 (active immunization against infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000498 "An immunization that begins with exposure of an organism to antigen and results in immunity against an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000498 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000498 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000498 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000498 "inoculation"@en) AnnotationAssertion(rdfs:label obo:IDO_0000498 "active immunization against infectious agent"@en) SubClassOf(obo:IDO_0000498 obo:IDO_0000497) # Class: obo:IDO_0000499 (vaccination against infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000499 "An active immunization that begins with exposure of an organism to a vaccine."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000499 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000499 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000499 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000499 "vaccination against infectious agent"@en) SubClassOf(obo:IDO_0000499 obo:IDO_0000498) # Class: obo:IDO_0000500 (variolation) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000500 "An active immunization that begins with exposure to smallpox in the form of a scab from a pustule and results in immunity against smallpox."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000500 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000500 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000500 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000500 "variolation"@en) SubClassOf(obo:IDO_0000500 obo:IDO_0000498) # Class: obo:IDO_0000501 (passive immunization against infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000501 "An immunization that begins with transfer to an organism of molecules not produced by that organism and that confer immunity against an infectious agent."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000501 "Examples include the injection of antibodies and the transfer of maternal antibodies to the fetus."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000501 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000501 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000501 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000501 "passive immunization against infectious agent"@en) SubClassOf(obo:IDO_0000501 obo:IDO_0000497) # Class: obo:IDO_0000502 (infectious disease epidemic) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000502 "A process of infectious disease realizations and for which there is a statistically significant increase in the infectious disease incidence of a population."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000502 "For a particular instance of infectious disease epidemic, signficance is determined based on the infectious disease incidence that is typical for an infectious disease for the particular population and time period. "@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000502 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000502 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000502 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000502 "infectious disease outbreak"@en) AnnotationAssertion(rdfs:label obo:IDO_0000502 "infectious disease epidemic"@en) SubClassOf(obo:IDO_0000502 obo:BFO_0000015) # Class: obo:IDO_0000503 (infectious disease pandemic) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000503 "A process in which multiple infectious disease epidemics of the same type of infectious disease unfold over overlapping periods of time and affect organism populations located in different geographic regions, including different countries and continents."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000503 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000503 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000503 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000503 "infectious disease pandemic"@en) SubClassOf(obo:IDO_0000503 obo:BFO_0000015) # Class: obo:IDO_0000504 (infectious disorder) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000504 "An infection that is clinically abnormal."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000504 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000504 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000504 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000504 "infectious disorder"@en) EquivalentClasses(obo:IDO_0000504 ObjectIntersectionOf(obo:IDO_0000586 obo:OGMS_0000045)) SubClassOf(obo:IDO_0000504 obo:IDO_0000586) SubClassOf(obo:IDO_0000504 obo:OGMS_0000045) DisjointClasses(obo:IDO_0000504 obo:IDO_0000617) # Class: obo:IDO_0000505 (viremia) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000505 "An infection that has as part virus particles located in the blood."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000505 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000505 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000505 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000505 "viremia"@en) EquivalentClasses(obo:IDO_0000505 ObjectIntersectionOf(obo:IDO_0000586 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 obo:NCBITaxon_10239 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0000178))))) SubClassOf(obo:IDO_0000505 obo:IDO_0000472) DisjointClasses(obo:IDO_0000505 obo:IDO_0000506) # Class: obo:IDO_0000506 (bacteremia) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000506 "An infection that has as part bacteria located in the blood."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000506 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000506 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000506 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000506 "bacteremia"@en) EquivalentClasses(obo:IDO_0000506 ObjectIntersectionOf(obo:IDO_0000586 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 obo:NCBITaxon_2 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0000178))))) SubClassOf(obo:IDO_0000506 obo:IDO_0000472) # Class: obo:IDO_0000507 (_obsolete_septicemia) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000507 "A bacteremia in which the baceteria are replicating."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000507 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000507 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000507 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000507 "_obsolete_septicemia"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000507 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000507 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000508 (virion) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000508 "A virus that is in its assembled state consisting of genomic material (DNA or RNA) surrounded by coating molecules."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000508 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000508 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000508 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000508 "virion"@en) SubClassOf(obo:IDO_0000508 obo:NCBITaxon_10239) # Class: obo:IDO_0000509 (organism population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000509 "An aggregate of organisms of the same Species."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000509 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000509 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000509 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000509 "The organism population may be delineated by spatio-temporal proximity or by demographic criteria such as age.") AnnotationAssertion(rdfs:label obo:IDO_0000509 "organism population"@en) SubClassOf(obo:IDO_0000509 obo:BFO_0000027) # Class: obo:IDO_0000511 (infected population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000511 "An organism population whose members have an infection."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000511 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000511 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000511 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000511 "infected population"@en) SubClassOf(obo:IDO_0000511 obo:IDO_0000509) SubClassOf(obo:IDO_0000511 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000460) ObjectAllValuesFrom(obo:BFO_0000051 obo:IDO_0000460))) # Class: obo:IDO_0000512 (diseased population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000512 "An organism population in whose members an infectious disease is being realized."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000512 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000512 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000512 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000512 "diseased population"@en) SubClassOf(obo:IDO_0000512 obo:IDO_0000509) SubClassOf(obo:IDO_0000512 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:IDO_0000495))) ObjectAllValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:IDO_0000495))))) # Class: obo:IDO_0000513 (infectious agent population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000513 "An organism population whose members each have an infectious disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000513 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000513 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000513 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000513 "infectious agent population"@en) SubClassOf(obo:IDO_0000513 obo:IDO_0000509) SubClassOf(obo:IDO_0000513 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000596) ObjectAllValuesFrom(obo:BFO_0000051 obo:IDO_0000596))) # Class: obo:IDO_0000514 (susceptible population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000514 "An organism population whose members are not infected with an infectious agent and who lack immunity to the infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000514 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000514 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000514 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000514 "at-risk population"@en) AnnotationAssertion(rdfs:label obo:IDO_0000514 "susceptible population"@en) SubClassOf(obo:IDO_0000514 obo:IDO_0000509) # Class: obo:IDO_0000515 (normal resident microbiota population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000515 "An organism population whose members are participating in non-parasitic symbiosis with a particular host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000515 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000515 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000515 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000515 "normal resident microflora population"@en) AnnotationAssertion(rdfs:label obo:IDO_0000515 "normal resident microbiota population"@en) SubClassOf(obo:IDO_0000515 obo:IDO_0000509) # Class: obo:IDO_0000516 (_obsolete_configured infectious organism population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000516 "An infectious organism population with a certain configuration quality (OGMS:0000039) (distributed across a spatial region (e.g., anatomical location in a host) in a particular way). Put e.g. In comments"@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000516 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000516 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000516 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000516 "_obsolete_configured infectious organism population"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000516 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000516 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000519 (incubation period) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000519 "A continuous temporal interval beginning with the extablishment of an infectious agent colony and ending with the onset of symptoms (or infectious disease course?)."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000519 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000519 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000519 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000519 "incubation period"@en) SubClassOf(obo:IDO_0000519 obo:BFO_0000038) # Class: obo:IDO_0000520 (communicability period) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000520 "A continuous temporal interval during which an infectious agent host bears a contagiousness disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000520 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000520 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000520 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000520 "communicability period"@en) SubClassOf(obo:IDO_0000520 obo:BFO_0000038) # Class: obo:IDO_0000522 (symbiont) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000522 "An organism bearing a symbiont role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000522 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000522 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000522 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000522 "symbiont"@en) EquivalentClasses(obo:IDO_0000522 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000400))) SubClassOf(obo:IDO_0000522 obo:OBI_0100026) # Class: obo:IDO_0000523 (obligatory symbiont) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000523 "An organism that can only reach developmental maturity, replicate, or persist in symbiosis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000523 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000523 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000523 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000523 "obligatory symbiont"@en) SubClassOf(obo:IDO_0000523 obo:IDO_0000522) SubClassOf(obo:IDO_0000523 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000400)) # Class: obo:IDO_0000524 (mutualist) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000524 "An organism bearing a mutualist role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000524 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000524 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000524 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000524 "mutualist"@en) EquivalentClasses(obo:IDO_0000524 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000401))) SubClassOf(obo:IDO_0000524 obo:IDO_0000522) # Class: obo:IDO_0000525 (commensal) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000525 "An organism bearing a commensal role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000525 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000525 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000525 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000525 "commensal"@en) EquivalentClasses(obo:IDO_0000525 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000402))) SubClassOf(obo:IDO_0000525 obo:IDO_0000522) # Class: obo:IDO_0000526 (parasite) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000526 "A organism bearing a parasite role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000526 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000526 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000526 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000526 "parasite"@en) EquivalentClasses(obo:IDO_0000526 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000403))) SubClassOf(obo:IDO_0000526 obo:IDO_0000522) # Class: obo:IDO_0000527 (_obsolete_infectious organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000527 "An infectious agent that is an organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000527 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000527 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000527 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000527 "_obsolete_infectious organism"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000527 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000527 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000528 (pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000528 "A material entity with a pathogenic disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000528 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000528 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000528 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000528 "pathogen"@en) EquivalentClasses(obo:IDO_0000528 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000450))) SubClassOf(obo:IDO_0000528 obo:BFO_0000040) DisjointClasses(obo:IDO_0000528 obo:IDO_0000544) DisjointClasses(obo:IDO_0000528 obo:IDO_0000555) DisjointClasses(obo:IDO_0000528 obo:IDO_0000556) DisjointClasses(obo:IDO_0000528 obo:IDO_0000617) # Class: obo:IDO_0000530 (primary pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000530 "An infectious agent with a primary infectious disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000530 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000530 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000530 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000530 "principal pathogen") AnnotationAssertion(rdfs:label obo:IDO_0000530 "primary pathogen"@en) EquivalentClasses(obo:IDO_0000530 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000407))) SubClassOf(obo:IDO_0000530 obo:IDO_0000596) # Class: obo:IDO_0000531 (host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000531 "An organism bearing a host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000531 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000531 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000531 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000531 "host"@en) EquivalentClasses(obo:IDO_0000531 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000629))) SubClassOf(obo:IDO_0000531 obo:OBI_0100026) # Class: obo:IDO_0000532 (definitive host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000532 "An organism bearing a definitive host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000532 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000532 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000532 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000532 "primary host"@en) AnnotationAssertion(rdfs:label obo:IDO_0000532 "definitive host"@en) EquivalentClasses(obo:IDO_0000532 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000409))) SubClassOf(obo:IDO_0000532 obo:IDO_0000531) # Class: obo:IDO_0000533 (intermediate host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000533 "A organism bearing an intermediate host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000533 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000533 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000533 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000533 "secondary host"@en) AnnotationAssertion(rdfs:label obo:IDO_0000533 "intermediate host"@en) EquivalentClasses(obo:IDO_0000533 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410))) SubClassOf(obo:IDO_0000533 obo:IDO_0000531) # Class: obo:IDO_0000534 (paratenic host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000534 "An organism bearing a paratenic host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000534 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000534 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000534 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000534 "paratenic host"@en) EquivalentClasses(obo:IDO_0000534 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000411))) SubClassOf(obo:IDO_0000534 obo:IDO_0000531) # Class: obo:IDO_0000535 (dead-end host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000535 "An organism bearing a dead-end host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000535 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000535 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000535 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000535 "incidental host"@en) AnnotationAssertion(rdfs:label obo:IDO_0000535 "dead-end host"@en) EquivalentClasses(obo:IDO_0000535 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000412))) SubClassOf(obo:IDO_0000535 obo:IDO_0000531) # Class: obo:IDO_0000536 (parasite host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000536 "An organism bearing a parasite host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000536 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000536 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000536 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000536 "parasite host"@en) EquivalentClasses(obo:IDO_0000536 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000413))) SubClassOf(obo:IDO_0000536 obo:IDO_0000531) # Class: obo:IDO_0000537 (infectious agent host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000537 "An organism bearing an infectious agent host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000537 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000537 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000537 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000537 "infectious agent host"@en) EquivalentClasses(obo:IDO_0000537 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000414))) SubClassOf(obo:IDO_0000537 obo:IDO_0000538) # Class: obo:IDO_0000538 (pathogen host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000538 "An organism bearing a pathogen host role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000538 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000538 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000538 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000538 "pathogen host"@en) EquivalentClasses(obo:IDO_0000538 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000415))) SubClassOf(obo:IDO_0000538 obo:IDO_0000531) # Class: obo:IDO_0000539 (infectious agent carrier) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000539 "An organism bearing the infectious agent carrier role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000539 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000539 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000539 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000539 "infectious agent carrier"@en) EquivalentClasses(obo:IDO_0000539 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000416))) SubClassOf(obo:IDO_0000539 obo:IDO_0000537) # Class: obo:IDO_0000540 (infectious agent vector) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000540 "An organism bearing an infectious agent vector role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000540 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000540 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000540 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000540 "infectious agent vector"@en) EquivalentClasses(obo:IDO_0000540 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000418))) SubClassOf(obo:IDO_0000540 obo:OBI_0100026) # Class: obo:IDO_0000541 (mechanical vector of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000541 "An infectious agent vector bearing a mechanical vector of infectious agent role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000541 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000541 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000541 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000541 "mechanical vector of infectious agent"@en) EquivalentClasses(obo:IDO_0000541 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000419))) SubClassOf(obo:IDO_0000541 obo:IDO_0000540) # Class: obo:IDO_0000542 (biological vector of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000542 "An infectious agent vector bearing a biological vector of infectious agent role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000542 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000542 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000542 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000542 "biological vector of infectious agent"@en) EquivalentClasses(obo:IDO_0000542 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000420))) SubClassOf(obo:IDO_0000542 obo:IDO_0000540) # Class: obo:IDO_0000543 (vehicle of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000543 "A material entity bearing an infectious agent vehicle role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000543 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000543 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000543 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000543 "vehicle of infectious agent"@en) EquivalentClasses(obo:IDO_0000543 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000421))) SubClassOf(obo:IDO_0000543 obo:BFO_0000040) DisjointClasses(obo:IDO_0000543 obo:IDO_0000617) # Class: obo:IDO_0000544 (fomite) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000544 "A material entity bearing a fomite role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000544 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000544 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000544 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000544 "fomite"@en) EquivalentClasses(obo:IDO_0000544 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000423))) SubClassOf(obo:IDO_0000544 obo:IDO_0000543) DisjointClasses(obo:IDO_0000544 obo:OBI_0100026) DisjointClasses(obo:IDO_0000544 obo:OGMS_0000045) # Class: obo:IDO_0000545 (infectious agent reservoir) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000545 "A material entity bearing an infectious agent reservoir role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000545 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000545 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000545 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000545 "infectious agent reservoir"@en) EquivalentClasses(obo:IDO_0000545 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000424))) SubClassOf(obo:IDO_0000545 obo:BFO_0000040) DisjointClasses(obo:IDO_0000545 obo:IDO_0000617) # Class: obo:IDO_0000546 (_obsolete_end reservoir of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000546 "A material entity bearing an end reservoir of infectious agent role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000546 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000546 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000546 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000546 "dead-end reservoir of infectious agent"@en) AnnotationAssertion(rdfs:label obo:IDO_0000546 "_obsolete_end reservoir of infectious agent"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000546 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000546 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000547 (virulence factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000547 "A biological macromolecule produced by a pathogen and that has a virulence factor disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000547 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000547 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000547 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000547 "virulence factor"@en) EquivalentClasses(obo:IDO_0000547 ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000425))) SubClassOf(obo:IDO_0000547 obo:CHEBI_23367) # Class: obo:IDO_0000548 (invasion factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000548 "A biological macromolecule that has an invasion disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000548 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000548 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000548 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000548 "invasin"@en) AnnotationAssertion(rdfs:label obo:IDO_0000548 "invasion factor"@en) EquivalentClasses(obo:IDO_0000548 ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000438))) SubClassOf(obo:IDO_0000548 obo:CHEBI_23367) # Class: obo:IDO_0000549 (toxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000549 "A molecular entity that has a toxin disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000549 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000549 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000549 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000549 "toxin"@en) EquivalentClasses(obo:IDO_0000549 ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000426))) SubClassOf(obo:IDO_0000549 obo:CHEBI_23367) # Class: obo:IDO_0000550 (exotoxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000550 "A molecular entity bearing an exotoxin disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000550 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000550 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000550 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000550 "exotoxin"@en) EquivalentClasses(obo:IDO_0000550 ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000427))) SubClassOf(obo:IDO_0000550 obo:IDO_0000549) # Class: obo:IDO_0000551 (enterotoxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000551 "A molecular entity with an exotoxin disposition, the realization of which damages cells of the host intestinal mucosa."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000551 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000551 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000551 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000551 "enterotoxin"@en) SubClassOf(obo:IDO_0000551 obo:IDO_0000550) SubClassOf(obo:IDO_0000551 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000427)) # Class: obo:IDO_0000552 (endotoxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000552 "A molecular entity with a toxin disposition and that is a structural component of a pathogen and is released from the pathogen only upon cytolysis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000552 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000552 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000552 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000552 "endotoxin"@en) SubClassOf(obo:IDO_0000552 obo:IDO_0000549) SubClassOf(obo:IDO_0000552 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000426)) # Class: obo:IDO_0000553 (infectious agent portal of entry) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000553 "An anatomical entity bearing an infectious agent portal of entry role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000553 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000553 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000553 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000553 "infectious agent portal of entry"@en) EquivalentClasses(obo:IDO_0000553 ObjectIntersectionOf(obo:CARO_0000000 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000430))) SubClassOf(obo:IDO_0000553 obo:CARO_0000000) # Class: obo:IDO_0000554 (infectious agent portal of exit) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000554 "An anatomical entity bearing an infectious agent portal of exit role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000554 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000554 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000554 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000554 "infectious agent portal of exit"@en) EquivalentClasses(obo:IDO_0000554 ObjectIntersectionOf(obo:CARO_0000000 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000431))) SubClassOf(obo:IDO_0000554 obo:CARO_0000000) # Class: obo:IDO_0000555 (disinfectant) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000555 "A material entity bearing a disinfectant role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000555 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000555 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000555 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000555 "disinfectant"@en) EquivalentClasses(obo:IDO_0000555 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000432))) SubClassOf(obo:IDO_0000555 obo:BFO_0000040) DisjointClasses(obo:IDO_0000555 obo:IDO_0000586) DisjointClasses(obo:IDO_0000555 obo:OBI_0100026) DisjointClasses(obo:IDO_0000555 obo:OGMS_0000045) # Class: obo:IDO_0000556 (antiseptic) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000556 "A material entity bearing an antiseptic role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000556 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000556 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000556 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000556 "antiseptic"@en) EquivalentClasses(obo:IDO_0000556 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000433))) SubClassOf(obo:IDO_0000556 obo:BFO_0000040) DisjointClasses(obo:IDO_0000556 obo:IDO_0000586) DisjointClasses(obo:IDO_0000556 obo:OBI_0100026) DisjointClasses(obo:IDO_0000556 obo:OGMS_0000045) # Class: obo:IDO_0000557 (adhesion factor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000557 "A biological macromolecule that has an adhesion disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000557 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000557 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000557 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000557 "adhesin"@en) AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000557 "adhesion molecule"@en) AnnotationAssertion(rdfs:label obo:IDO_0000557 "adhesion factor"@en) EquivalentClasses(obo:IDO_0000557 ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000437))) SubClassOf(obo:IDO_0000557 obo:CHEBI_23367) # Class: obo:IDO_0000558 (antimicrobial) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000558 "A material entity with an antimicrobial disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000558 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000558 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000558 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000558 "antimicrobial"@en) EquivalentClasses(obo:IDO_0000558 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000439))) SubClassOf(obo:IDO_0000558 obo:BFO_0000040) DisjointClasses(obo:IDO_0000558 obo:IDO_0000586) DisjointClasses(obo:IDO_0000558 obo:OGMS_0000045) # Class: obo:IDO_0000559 (antiviral) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000559 "A material entity bearing an antiviral disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000559 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000559 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000559 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000559 "antiviral"@en) EquivalentClasses(obo:IDO_0000559 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000440))) SubClassOf(obo:IDO_0000559 obo:BFO_0000040) DisjointClasses(obo:IDO_0000559 obo:IDO_0000586) DisjointClasses(obo:IDO_0000559 obo:OGMS_0000045) # Class: obo:IDO_0000560 (antifungal) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000560 "A material entity bearing an antifungal disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000560 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000560 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000560 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000560 "antifungal"@en) EquivalentClasses(obo:IDO_0000560 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000441))) SubClassOf(obo:IDO_0000560 obo:BFO_0000040) DisjointClasses(obo:IDO_0000560 obo:IDO_0000586) DisjointClasses(obo:IDO_0000560 obo:OGMS_0000045) # Class: obo:IDO_0000561 (antiparasitic) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000561 "A material entity bearing an antiparasitic disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000561 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000561 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000561 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000561 "antiparasitic"@en) EquivalentClasses(obo:IDO_0000561 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000443))) SubClassOf(obo:IDO_0000561 obo:BFO_0000040) DisjointClasses(obo:IDO_0000561 obo:IDO_0000586) DisjointClasses(obo:IDO_0000561 obo:OGMS_0000045) # Class: obo:IDO_0000562 (antibacterial) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000562 "A material entity bearing an antibacterial disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000562 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000562 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000562 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000562 "antibiotic") AnnotationAssertion(rdfs:label obo:IDO_0000562 "antibacterial"@en) EquivalentClasses(obo:IDO_0000562 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000442))) SubClassOf(obo:IDO_0000562 obo:BFO_0000040) DisjointClasses(obo:IDO_0000562 obo:IDO_0000586) DisjointClasses(obo:IDO_0000562 obo:OGMS_0000045) # Class: obo:IDO_0000563 (microbicide) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000563 "A material entity with an antimicrobial disposition that is realized in a process of killing microorganisms."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000563 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000563 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000563 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000563 "microbicidal [entity]"@en) AnnotationAssertion(rdfs:label obo:IDO_0000563 "microbicide"@en) EquivalentClasses(obo:IDO_0000563 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 ObjectIntersectionOf(obo:IDO_0000439 ObjectAllValuesFrom(obo:BFO_0000054 ObjectSomeValuesFrom(obo:IDO_0000660 obo:UBERON_0035944)))))) SubClassOf(obo:IDO_0000563 obo:IDO_0000558) # Class: obo:IDO_0000564 (viricide) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000564 "A material entity with an antiviral disposition that is realized in a process of killing viruses."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000564 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000564 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000564 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000564 "viricide"@en) EquivalentClasses(obo:IDO_0000564 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 ObjectIntersectionOf(obo:IDO_0000440 ObjectAllValuesFrom(obo:BFO_0000054 obo:UBERON_0035944))))) SubClassOf(obo:IDO_0000564 obo:IDO_0000559) # Class: obo:IDO_0000565 (microbistatic) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000565 "A material entity with an antimicrobial disposition that is realized in a process of inhibiting the growth of microorganisms."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000565 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000565 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000565 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000565 "microbistatic"@en) EquivalentClasses(obo:IDO_0000565 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 ObjectIntersectionOf(obo:IDO_0000439 ObjectAllValuesFrom(obo:BFO_0000054 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0000003) ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0032502))))))) SubClassOf(obo:IDO_0000565 obo:IDO_0000558) # Class: obo:IDO_0000566 (primary infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000566 "An infection bearing the primary infection role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000566 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000566 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000566 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000566 "primary infection"@en) EquivalentClasses(obo:IDO_0000566 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000434))) SubClassOf(obo:IDO_0000566 obo:IDO_0000504) DisjointClasses(obo:IDO_0000566 obo:IDO_0000567) # Class: obo:IDO_0000567 (secondary infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000567 "An infection bearing the secondary infection role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000567 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000567 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000567 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000567 "secondary infection"@en) EquivalentClasses(obo:IDO_0000567 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000435))) SubClassOf(obo:IDO_0000567 obo:IDO_0000504) # Class: obo:IDO_0000568 (zoonosis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000568 "An infectious disease that has as its physical basis an infectious disorder composed of infectious agents that have a zoonotic disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000568 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000568 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000568 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000568 "zoonosis"@en) EquivalentClasses(obo:IDO_0000568 ObjectIntersectionOf(obo:IDO_0000436 ObjectSomeValuesFrom(obo:IDO_0000664 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000453))))) ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000453))))))))) ObjectAllValuesFrom(obo:IDO_0000664 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000453))))) ObjectAllValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000453))))))))))) SubClassOf(obo:IDO_0000568 obo:IDO_0000436) DisjointClasses(obo:IDO_0000568 obo:IDO_0000653) # Class: obo:IDO_0000569 (asymptomatic host of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000569 "An organism that is host to an infectious agent and has no symptoms of the infectious disease associated with the infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000569 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000569 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000569 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000569 "asymptomatic host of infectious agent"@en) SubClassOf(obo:IDO_0000569 obo:IDO_0000537) SubClassOf(obo:IDO_0000569 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000414)) # Class: obo:IDO_0000570 (subclinical infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000570 "An infection that is part of an asymptomatic host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000570 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000570 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000570 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000570 "subclinical infection"@en) SubClassOf(obo:IDO_0000570 obo:IDO_0000586) # Class: obo:IDO_0000571 (resistant entity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000571 "A material entity that has a resistance disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000571 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000571 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000571 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000571 "resistant entity"@en) EquivalentClasses(obo:IDO_0000571 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000444))) SubClassOf(obo:IDO_0000571 obo:BFO_0000040) DisjointClasses(obo:IDO_0000571 obo:IDO_0000617) # Class: obo:IDO_0000572 (chronic carrier of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000572 "An organism who has been bearer of the infectious agent carrier role for an extended period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000572 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000572 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000572 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000572 "chronic carrier of infectious agent"@en) SubClassOf(obo:IDO_0000572 obo:IDO_0000539) SubClassOf(obo:IDO_0000572 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000416))) # Class: obo:IDO_0000573 (symptomatic host of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000573 "An organism who is host to an infectious agent and has symptoms of the infectious disease associated with the infectious agent"@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000573 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000573 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000573 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000573 "symptomatic host of infectious agent"@en) SubClassOf(obo:IDO_0000573 obo:IDO_0000537) SubClassOf(obo:IDO_0000573 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000414)) # Class: obo:IDO_0000574 (_obsolete_invasin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000574 "synonym of invasion factor"@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000574 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000574 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000574 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000574 "_obsolete_invasin"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000574 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000574 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000575 (_obsolete_viral latency) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000575 ""@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000575 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000575 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000575 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000575 "_obsolete_viral latency"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000575 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000575 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000576 (innate immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000576 "An immunity to infectious agent that inheres in an organism in virtue of germline encoded components that directly recognize components of potential pathogens."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000576 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000576 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000576 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000576 "The disposition is realized in an innate immune response.") AnnotationAssertion(rdfs:label obo:IDO_0000576 "innate immunity to infectious agent"@en) SubClassOf(obo:IDO_0000576 obo:IDO_0000448) SubClassOf(obo:IDO_0000576 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0045087))) # Class: obo:IDO_0000577 (_obsolete_adaptive immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000577 "An immunity to infectious agent realized in an adaptive immune response."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000577 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000577 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000577 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000577 "_obsolete_adaptive immunity to infectious agent"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000577 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000577 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000578 (humoral immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000578 "An immunity to infectious agent that inheres in an organism in virtue of components of its circulating body fluid."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000578 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000578 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000578 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000578 "\"Circulating body fluid\" refers to blood, lymph, and hemolymph.") AnnotationAssertion(rdfs:comment obo:IDO_0000578 "The disposition is realized in a humoral immune response.") AnnotationAssertion(rdfs:label obo:IDO_0000578 "humoral immunity to infectious agent"@en) SubClassOf(obo:IDO_0000578 obo:IDO_0000448) SubClassOf(obo:IDO_0000578 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0006959))) # Class: obo:IDO_0000579 (leukocyte-mediated immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000579 "An immunity to infectious agent that inheres in an organism in virtue of its leukocytes."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000579 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000579 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000579 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000579 "cell-mediated immunity to infectious agent") AnnotationAssertion(rdfs:comment obo:IDO_0000579 "The disposition is realized in a leukocyte-mediated immune response.") AnnotationAssertion(rdfs:label obo:IDO_0000579 "leukocyte-mediated immunity to infectious agent"@en) EquivalentClasses(obo:IDO_0000579 ObjectIntersectionOf(obo:IDO_0000448 ObjectSomeValuesFrom(obo:IDO_0000664 obo:CL_0000738) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0002443) ObjectAllValuesFrom(obo:IDO_0000664 obo:CL_0000738))) SubClassOf(obo:IDO_0000579 obo:IDO_0000448) # Class: obo:IDO_0000580 (passive immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000580 "An immunity to infectious agent that inheres in an organism in virtue of antibodies not produced by that organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000580 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000580 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000580 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000580 "Passive immunity results from a passive immunization."@en) AnnotationAssertion(rdfs:comment obo:IDO_0000580 "The disposition is realized in a neutralizing process carried out by the antibodies.") AnnotationAssertion(rdfs:comment obo:IDO_0000580 "The protective antibodies are typically introduced by injection, breast feeding, or by passing from the placenta to the fetus.") AnnotationAssertion(rdfs:label obo:IDO_0000580 "passive immunity to infectious agent"@en) SubClassOf(obo:IDO_0000580 obo:IDO_0000448) # Class: obo:IDO_0000581 (antibiotic resistance) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000581 "A resistance to drug that mitigates the damaging effects of an antibiotic."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000581 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000581 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000581 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000581 "antibiotic resistance"@en) SubClassOf(obo:IDO_0000581 obo:IDO_0000445) # Class: obo:IDO_0000582 (long-term non-progressor) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000582 "An organism experiencing a long-term non-progressing infectious disease course."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000582 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000582 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000582 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000582 "long-term non-progressor"@en) EquivalentClasses(obo:IDO_0000582 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(ObjectInverseOf(obo:BFO_0000066) obo:IDO_0000496))) SubClassOf(obo:IDO_0000582 obo:OBI_0100026) # Class: obo:IDO_0000583 (emerging pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000583 "An infectious agent whose infection incidence is increasing following its first introduction into a new host Species."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000583 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000583 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000583 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000583 "emerging pathogen"@en) SubClassOf(obo:IDO_0000583 obo:IDO_0000596) # Class: obo:IDO_0000584 (cytotoxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000584 "A molecular entity with a toxin disposition, the realization of which damages host cells."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000584 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000584 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000584 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000584 "cytotoxin"@en) SubClassOf(obo:IDO_0000584 obo:IDO_0000549) SubClassOf(obo:IDO_0000584 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000426)) # Class: obo:IDO_0000585 (collective pathogenic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000585 "A collective disposition to initiate processes that result in a disorder."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000585 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000585 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000585 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000585 "The disposition is realized in processes that create a disorder.") AnnotationAssertion(rdfs:label obo:IDO_0000585 "collective pathogenic disposition"@en) EquivalentClasses(obo:IDO_0000585 ObjectIntersectionOf(obo:IDO_0000455 ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000027) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0002297 obo:OGMS_0000045))))) SubClassOf(obo:IDO_0000585 obo:IDO_0000455) DisjointClasses(obo:IDO_0000585 obo:IDO_0000588) # Class: obo:IDO_0000586 (infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000586 "A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000586 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000586 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000586 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000586 "The organism corresponding to the extended organism is host to the infectious agents. By this definition, parts of the host can be considered part of the infection.") AnnotationAssertion(rdfs:label obo:IDO_0000586 "infection"@en) SubClassOf(obo:IDO_0000586 obo:BFO_0000040) SubClassOf(obo:IDO_0000586 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000050 obo:OGMS_0000087) ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000596))) DisjointClasses(obo:IDO_0000586 obo:IDO_0000617) # Class: obo:IDO_0000587 (genetic resistance to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000587 "A resistance to infectious agent that inheres in an organism in virtue of a specific allele or combination of alleles in its genome."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000587 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000587 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000587 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000587 "The resistance of individuals to HIV invasion oonferred by particular CCR5 alleles is an example. Resistance against malaria conferred by the sickle cell gene is another.") AnnotationAssertion(rdfs:label obo:IDO_0000587 "genetic resistance to infectious agent"@en) SubClassOf(obo:IDO_0000587 obo:IDO_0000446) # Class: obo:IDO_0000588 (collective resistance disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000588 "A collective disposition the realization of which mitigates the damaging effects of some entity on members of the collection."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000588 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000588 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000588 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000588 "collective resistance disposition"@en) SubClassOf(obo:IDO_0000588 obo:IDO_0000455) # Class: obo:IDO_0000589 (immunodeficient organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000589 "An organism that has an immunodeficiency."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000589 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000589 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000589 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000589 "immunocompromised organism"@en) AnnotationAssertion(rdfs:label obo:IDO_0000589 "immunodeficient organism"@en) EquivalentClasses(obo:IDO_0000589 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000617))) SubClassOf(obo:IDO_0000589 obo:OBI_0100026) # Class: obo:IDO_0000590 (chronic infectious disease course) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000590 "An infectious disease course that unfolds over a long period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000590 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000590 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000590 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000590 "persistent infectious disease course"@en) AnnotationAssertion(rdfs:label obo:IDO_0000590 "chronic infectious disease course"@en) SubClassOf(obo:IDO_0000590 obo:IDO_0000495) # Class: obo:IDO_0000591 (_obsolete_communicable disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000591 "An infectious disposition to be transmitted directly from one human host to another."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000591 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000591 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000591 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000591 "_obsolete_communicable disposition"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000591 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000591 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000592 (immune population) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000592 "An organism population whose members have acquired immunity to an infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000592 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000592 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000592 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000592 "immune population"@en) SubClassOf(obo:IDO_0000592 obo:IDO_0000509) SubClassOf(obo:IDO_0000592 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000621))) ObjectAllValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000621))))) # Class: obo:IDO_0000593 (transmission period) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000593 "A continuous temporal interval during which a transmission process occurs."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000593 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000593 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000593 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000593 "transmission period"@en) SubClassOf(obo:IDO_0000593 obo:BFO_0000038) # Class: obo:IDO_0000594 (direct host exposure to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000594 "A process in which a potential host of an infectious agent comes into direct physical contact with the infectious agent."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000594 "Bjoern Peters") AnnotationAssertion(rdfs:label obo:IDO_0000594 "direct host exposure to infectious agent"@en) SubClassOf(obo:IDO_0000594 obo:IDO_0000658) # Class: obo:IDO_0000595 (potential host of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000595 "An organism that has the capability to bear a host of infectious agent role."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000595 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000595 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000595 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000595 "potential host of infectious agent"@en) EquivalentClasses(obo:IDO_0000595 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 ObjectSomeValuesFrom(obo:BFO_0000054 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000414))))) SubClassOf(obo:IDO_0000595 obo:OBI_0100026) # Class: obo:IDO_0000596 (infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000596 "An organism that has an infectious disposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000596 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000596 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000596 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000596 "infectious agent"@en) EquivalentClasses(obo:IDO_0000596 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000452))) SubClassOf(obo:IDO_0000596 obo:IDO_0000528) SubClassOf(obo:IDO_0000596 obo:OBI_0100026) # Class: obo:IDO_0000597 (host exposure to environment containing infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000597 "A process in which a potential host of an infectious agent is exposed to an environment in which the infectious agent is present and physical contact between the two can occur, but such contact is not planned."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000597 "Bjoern Peters") AnnotationAssertion(rdfs:label obo:IDO_0000597 "host exposure to environment containing infectious agent"@en) SubClassOf(obo:IDO_0000597 obo:IDO_0000658) # Class: obo:IDO_0000598 (host living with infected household contact) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000598 "A host exposure to environment with infectious agent where the environment is a household that also has an infected host"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000598 "Alan Ruttenberg 2010/05/20- Tentative definition. Needs review by Bjoern"@en) AnnotationAssertion(rdfs:label obo:IDO_0000598 "host living with infected household contact"@en) SubClassOf(obo:IDO_0000598 obo:IDO_0000597) # Class: obo:IDO_0000599 (host living in endemic area) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000599 "A host exposure to environment with infectious agent where the environment is an area in which an infectious agent is endemic"@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000599 "Alan Ruttenberg 2010/05/20- Tentative definition. Needs review by Bjoern"@en) AnnotationAssertion(rdfs:label obo:IDO_0000599 "host living in endemic area"@en) SubClassOf(obo:IDO_0000599 obo:IDO_0000597) # Class: obo:IDO_0000600 (release of infectious human pathogen in laboratory) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000600 "A host exposure to environment with infectious agent where the exposure is accidental; the environment is a laboratory, and the infectious agent is infectious in humans."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000600 "Alan Ruttenberg 2010/05/20- Tentative definition. Needs review by Bjoern"@en) AnnotationAssertion(rdfs:label obo:IDO_0000600 "release of infectious human pathogen in laboratory"@en) SubClassOf(obo:IDO_0000600 obo:IDO_0000597) # Class: obo:IDO_0000601 (host coming into contact with vector of infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000601 "A host exposure to environment with infectious agent where the environment contains an infectious agent vector."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000601 "Alan Ruttenberg 2010/05/20- Tentative definition. Needs review by Bjoern"@en) AnnotationAssertion(rdfs:label obo:IDO_0000601 "host coming into contact with vector of infectious agent"@en) SubClassOf(obo:IDO_0000601 obo:IDO_0000597) # Class: obo:IDO_0000602 (host exposure to substance that might have infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000602 "A host exposure to environment with infectious agent where the environment contains a material entity that has been assessed to confer a risk of infection."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000602 "Alan Ruttenberg 2010/05/20- Tentative definition. Needs review by Bjoern"@en) AnnotationAssertion(rdfs:label obo:IDO_0000602 "host exposure to substance that might have infectious agent"@en) SubClassOf(obo:IDO_0000602 obo:IDO_0000597) # Class: obo:IDO_0000603 (process of establishing an infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000603 "A process by which an infectious agent, established in a host, becomes part of an infection in the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000603 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000603 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000603 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000603 "process of establishing an infection"@en) SubClassOf(obo:IDO_0000603 obo:BFO_0000015) # Class: obo:IDO_0000604 (colonization of host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000604 "An establishment of localization in host process in which an organism establishes itself in a host."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000604 "Establishment of one organism in the extended organism of another (the host) involves at least one of (1) movement of the organism to a location within the host in which the organism can persist, or (2) adherence or attachment of the organism to part of the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000604 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000604 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000604 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000604 "colonization of host"@en) EquivalentClasses(obo:IDO_0000604 ObjectIntersectionOf(obo:IDO_0000625 ObjectSomeValuesFrom(obo:RO_0002234 obo:IDO_0000615))) SubClassOf(obo:IDO_0000604 obo:IDO_0000625) # Class: obo:IDO_0000605 (_obsolete_biological object colony) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000605 "A biological object or group of biological objects in close spatial proximity."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000605 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000605 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000605 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000605 "_obsolete_biological object colony"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000605 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000605 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000606 (establishment of a clinically abnormal colony) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000606 "A colonization of host process that results in a clinically abnormal colony."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000606 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000606 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000606 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000606 "establishment of a clinically abnormal colony"@en) SubClassOf(obo:IDO_0000606 obo:IDO_0000604) # Class: obo:IDO_0000607 (production) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000607 "A process in which an entity comes into being as a result of the process."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000607 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000607 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000607 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000607 "production"@en) SubClassOf(obo:IDO_0000607 obo:BFO_0000015) # Class: obo:IDO_0000608 (replication) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000608 "A production process in which a participant creates a copy of itself."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000608 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000608 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000608 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000608 "replication"@en) SubClassOf(obo:IDO_0000608 obo:IDO_0000607) # Class: obo:IDO_0000609 (colonization of human anterior nares) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000609 "A colonization of human process in which the colonized site is the anterior nares."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000609 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000609 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000609 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000609 "colonization of human anterior nares"@en) SubClassOf(obo:IDO_0000609 obo:IDO_0000650) # Class: obo:IDO_0000610 (immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000610 "A process that attenuates an immune response."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000610 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000610 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000610 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000610 "immunosuppression"@en) EquivalentClasses(obo:IDO_0000610 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0002212 obo:GO_0006955))) SubClassOf(obo:IDO_0000610 obo:BFO_0000015) # Class: obo:IDO_0000611 (physiologic immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000611 "An immunosuppression which unfolds as part of the natural self-regulation of an immune response."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000611 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000611 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000611 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000611 "physiologic immunosuppression"@en) SubClassOf(obo:IDO_0000611 obo:IDO_0000610) # Class: obo:IDO_0000612 (pathologic immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000612 "An immunosuppression process which arises as the result of a disorder."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000612 "Disorders that result in immunosuppression include those that result from infection, stress, malnutrition, and treatments such as chemotherapy or calcineurin inhibition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000612 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000612 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000612 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000612 "pathologic immunosuppression"@en) SubClassOf(obo:IDO_0000612 obo:IDO_0000610) # Class: obo:IDO_0000613 (_obsolete_biological object) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000613 "primitive"@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000613 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000613 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000613 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000613 "_obsolete_biological object"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000613 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000613 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000614 (_obsolete_replicating biological material entity) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000614 "A biological material entity that is capable of replication."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000614 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000614 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000614 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000614 "_obsolete_replicating biological material entity"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000614 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000614 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000615 (colony) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000615 "An organism population persisting in a site it has colonized."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000615 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000615 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000615 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000615 "colony"@en) SubClassOf(obo:IDO_0000615 obo:IDO_0000509) # Class: obo:IDO_0000616 (infectious agent colony) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000616 "A colony whose members are infectious agents."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000616 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000616 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000616 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000616 "infectious agent colony"@en) EquivalentClasses(obo:IDO_0000616 ObjectIntersectionOf(obo:IDO_0000615 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000596) ObjectAllValuesFrom(obo:BFO_0000051 obo:IDO_0000596))) SubClassOf(obo:IDO_0000616 obo:IDO_0000615) # Class: obo:IDO_0000617 (immunodeficiency) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000617 "A disorder of an immune system component that results in defective functioning of the immune system."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000617 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000617 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000617 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000617 "immunodeficiency"@en) SubClassOf(obo:IDO_0000617 obo:OGMS_0000045) DisjointClasses(obo:IDO_0000617 obo:IDO_0000665) # Class: obo:IDO_0000618 (immunocompetence) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000618 "A disposition that is the ability to mount a normal immune response."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000618 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000618 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000618 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000618 "The disposition inheres in a bearer in virtue of the fact that the bearer has all canonical immune system components and none are disordered. The disposition is realized in a successful immune response.") AnnotationAssertion(rdfs:label obo:IDO_0000618 "immunocompetence"@en) SubClassOf(obo:IDO_0000618 obo:BFO_0000016) SubClassOf(obo:IDO_0000618 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0006955))) DisjointClasses(obo:IDO_0000618 obo:IDO_0000619) DisjointClasses(obo:IDO_0000618 obo:IDO_0000622) DisjointClasses(obo:IDO_0000618 obo:IDO_0000655) DisjointClasses(obo:IDO_0000618 obo:OGMS_0000031) # Class: obo:IDO_0000619 (immunosuppressive disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000619 "A disposition whose realization negatively regulates an immune response."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000619 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000619 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000619 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000619 "immunosuppressive disposition"@en) SubClassOf(obo:IDO_0000619 obo:BFO_0000016) SubClassOf(obo:IDO_0000619 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 obo:IDO_0000610))) DisjointClasses(obo:IDO_0000619 obo:IDO_0000622) DisjointClasses(obo:IDO_0000619 obo:IDO_0000655) DisjointClasses(obo:IDO_0000619 obo:OGMS_0000031) # Class: obo:IDO_0000621 (acquired immunity to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000621 "An immunity to infectious agent that inheres in an organism in virtue of antigen receptors encoded by somatically diversified genes in the organism's genome and expressed by cells that have undergone selection during a primary immune response in that organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000621 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000621 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000621 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000621 "adaptive immunity to infectious agent"@en) AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000621 "immune memory"@en) AnnotationAssertion(rdfs:comment obo:IDO_0000621 "The disposition is realized in an immune response in which such antigen receptors participate.") AnnotationAssertion(rdfs:label obo:IDO_0000621 "acquired immunity to infectious agent"@en) EquivalentClasses(obo:IDO_0000621 ObjectIntersectionOf(obo:IDO_0000448 ObjectSomeValuesFrom(obo:IDO_0000664 ObjectUnionOf(obo:GO_0019814 obo:GO_0019815 obo:GO_0042101)) ObjectAllValuesFrom(obo:BFO_0000054 obo:GO_0002250) ObjectAllValuesFrom(obo:IDO_0000664 ObjectUnionOf(obo:GO_0019814 obo:GO_0019815 obo:GO_0042101)))) SubClassOf(obo:IDO_0000621 obo:IDO_0000448) # Class: obo:IDO_0000622 (disposition to form a non-parasitic colony) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000622 "A disposition to colonize an organism and participate in mutualism or commensalism with that organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000622 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000622 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000622 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000622 "disposition to form a non-parasitic colony"@en) SubClassOf(obo:IDO_0000622 obo:BFO_0000016) DisjointClasses(obo:IDO_0000622 obo:IDO_0000655) DisjointClasses(obo:IDO_0000622 obo:OGMS_0000031) # Class: obo:IDO_0000623 (communicability) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000623 "An infectious disposition to be transmitted directly from one organism to another of the same Species by horizontal transmission."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000623 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000623 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000623 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000623 "The disposition is realized in a direct, horizontal transmission process between members of the same Species.") AnnotationAssertion(rdfs:label obo:IDO_0000623 "communicability"@en) EquivalentClasses(obo:IDO_0000623 ObjectIntersectionOf(obo:IDO_0000452 ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000625) ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000626) ObjectSomeValuesFrom(obo:BFO_0000051 obo:IDO_0000656))))) SubClassOf(obo:IDO_0000623 obo:IDO_0000452) # Class: obo:IDO_0000624 (_obsolete_host range) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000624 "A generically dependent continuant that is the set of organism types whose instances have as one of their canonical dispositions, the disposition to bear the host role for a colony of a certain type."@en) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000624 "A quality that inheres in an infection and is the likelihood that infectious agents part of the infection will spread to other hosts."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000624 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000624 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000624 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000624 "_obsolete_contagiousness quality"@en) AnnotationAssertion(rdfs:label obo:IDO_0000624 "_obsolete_host range"@en) AnnotationAssertion(owl:deprecated obo:IDO_0000624 "true"^^xsd:boolean) SubClassOf(obo:IDO_0000624 oboInOwl:ObsoleteClass) # Class: obo:IDO_0000625 (establishment of localization in host) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000625 "An establishment of localization process in which a material entity reaches a site in an organism in which it can survive, grow, multiply, or mature."@en) AnnotationAssertion(obo:IAO_0000116 obo:IDO_0000625 "Requested addition of this term to the GO.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000625 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000625 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000625 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000625 "An organism begins bearing a particular host role as soon as the extended organism contains the relevant material entity, regardless of that entity's location in the extended organism. An establishment process is any process by which the entity reaches a location in the extended organism in which it can persist and continue its lifecycle. For example, an organism is host to a virus as soon as any part of the extended organism is occupied by virus particles. During an establishment process, virus particles enter host cells of the relevant type, and viral DNA is integrated into host DNA."@en) AnnotationAssertion(rdfs:label obo:IDO_0000625 "establishment of localization in host"@en) EquivalentClasses(obo:IDO_0000625 ObjectSomeValuesFrom(obo:BFO_0000066 obo:IDO_0000531)) SubClassOf(obo:IDO_0000625 obo:GO_0051234) # Class: obo:IDO_0000626 (appearance of disorder) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000626 "A process by which a disorder comes into existence."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000626 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000626 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000626 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000626 "appearance of disorder"@en) EquivalentClasses(obo:IDO_0000626 ObjectSomeValuesFrom(obo:RO_0002297 obo:OGMS_0000045)) SubClassOf(obo:IDO_0000626 obo:BFO_0000015) # Class: obo:IDO_0000627 (acute infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000627 "An infectious disorder that is the physical basis for an unfolding acute infectious disease course."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000627 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000627 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000627 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000627 "acute infection"@en) EquivalentClasses(obo:IDO_0000627 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(ObjectInverseOf(obo:IDO_0000664) ObjectSomeValuesFrom(obo:BFO_0000054 obo:IDO_0000477)))) SubClassOf(obo:IDO_0000627 obo:IDO_0000504) # Class: obo:IDO_0000628 (chronic infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000628 "An infection that persists for an extended period of time."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000628 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000628 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000628 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000628 "persistent infection"@en) AnnotationAssertion(rdfs:label obo:IDO_0000628 "chronic infection"@en) SubClassOf(obo:IDO_0000628 obo:IDO_0000586) # Class: obo:IDO_0000629 (host role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000629 "A role borne by an organism in virtue of the fact that it's extended organism contains a material entity other than the organism."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000629 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000629 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000629 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000629 "host role"@en) SubClassOf(obo:IDO_0000629 obo:BFO_0000023) SubClassOf(obo:IDO_0000629 ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 obo:BFO_0000040)))))) DisjointClasses(obo:IDO_0000629 obo:IDO_0000635) # Class: obo:IDO_0000630 (hospital-acquired infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000630 "An infection resulting from a transmission process that unfolds in a hospital."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000630 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000630 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000630 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000630 "nosocomial infection"@en) AnnotationAssertion(rdfs:label obo:IDO_0000630 "hospital-acquired infection"@en) SubClassOf(obo:IDO_0000630 obo:IDO_0000586) DisjointClasses(obo:IDO_0000630 obo:IDO_0000631) # Class: obo:IDO_0000631 (community-acquired infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000631 "An infection resulting from a transmission process that did not unfold in a health care facility."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000631 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000631 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000631 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000631 "community-acquired infection"@en) SubClassOf(obo:IDO_0000631 obo:IDO_0000586) DisjointClasses(obo:IDO_0000631 obo:IDO_0000638) # Class: obo:IDO_0000632 (neurotoxin) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000632 "A molecular entity with a toxin disposition, the realization of which damages or interferes with the function of nerve tissue."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000632 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000632 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000632 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000632 "neurotoxin"@en) SubClassOf(obo:IDO_0000632 obo:IDO_0000549) SubClassOf(obo:IDO_0000632 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000426)) # Class: obo:IDO_0000633 (metatstatic infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000633 "An infection established as a result of spread from another infection in a non-adjacent location in the extended organism of the host."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000633 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000633 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000633 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000633 "metatstatic infection"@en) SubClassOf(obo:IDO_0000633 obo:IDO_0000586) # Class: obo:IDO_0000635 (source of infection role) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000635 "A role borne by a material entity in virtue of the fact that it contains a site from which an infectious agent is transmitted."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000635 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000635 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000635 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000635 "The role is realized in a process that has as part a transmission process and a process by which the infectious agent or one of its offspring becomes part of a disorder in the host.") AnnotationAssertion(rdfs:label obo:IDO_0000635 "source of infection role"@en) SubClassOf(obo:IDO_0000635 obo:BFO_0000023) SubClassOf(obo:IDO_0000635 ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040)) # Class: obo:IDO_0000636 (sepsis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000636 "A process that is a systemic inflammatory response to infection."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000636 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000636 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000636 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000636 "sepsis"@en) SubClassOf(obo:IDO_0000636 obo:BFO_0000015) # Class: obo:IDO_0000637 (severe sepsis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000637 "A sepsis that results in organ dysfunction, hypotension, or hypofusion of at least one organ."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000637 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000637 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000637 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000637 "severe sepsis"@en) SubClassOf(obo:IDO_0000637 obo:IDO_0000636) # Class: obo:IDO_0000638 (nursing-home acquired infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000638 "An infection resulting from a transmission process that unfolds in a nursing home."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000638 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000638 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000638 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000638 "nursing-home acquired infection"@en) SubClassOf(obo:IDO_0000638 obo:IDO_0000586) # Class: obo:IDO_0000639 (infectious human pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000639 "An infectious agent with a capability to infect human hosts."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000639 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000639 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000639 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000639 "infectious human pathogen"@en) SubClassOf(obo:IDO_0000639 obo:IDO_0000596) # Class: obo:IDO_0000640 (acquired immunodeficiency) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000640 "An immunodeficiency that is not caused by a genetic predisposition."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000640 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000640 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000640 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000640 "Causes of acquired immunodeficiences include infection and drug treatments (e.g. chemotherapy).") AnnotationAssertion(rdfs:label obo:IDO_0000640 "acquired immunodeficiency"@en) SubClassOf(obo:IDO_0000640 obo:IDO_0000617) DisjointClasses(obo:IDO_0000640 obo:IDO_0000651) # Class: obo:IDO_0000642 (simple infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000642 "An infection comprised of infectious organisms all of the same Species."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000642 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000642 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000642 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000642 "simple infection"@en) SubClassOf(obo:IDO_0000642 obo:IDO_0000586) # Class: obo:IDO_0000643 (re-emerging pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000643 "An infectious agent whose infection incidence is increasing in a host population as a result of changes in the biology of the host or pathogen, or changes in their interactions."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000643 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000643 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000643 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000643 "re-emerging pathogen"@en) SubClassOf(obo:IDO_0000643 obo:IDO_0000596) # Class: obo:IDO_0000644 (pregnancy-induced immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000644 "An immunosuppression induced by progesterone and other factors upregulated in pregnant women."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000644 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000644 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000644 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000644 "pregnancy-induced immunosuppression"@en) SubClassOf(obo:IDO_0000644 obo:IDO_0000610) # Class: obo:IDO_0000645 (candidiasis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000645 "An infection that has as part organisms of the Genus Candida."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000645 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000645 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000645 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000645 "candidiasis"@en) SubClassOf(obo:IDO_0000645 obo:IDO_0000586) # Class: obo:IDO_0000646 (trichomoniasis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000646 "An infection that has as part organisms of the Species Trichomonas vaginalis."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000646 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000646 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000646 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000646 "trichomoniasis"@en) SubClassOf(obo:IDO_0000646 obo:PIDO_0000011) # Class: obo:IDO_0000647 (leptospirosis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000647 "An infection that has as part organisms of the Genus Leptospira."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000647 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000647 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000647 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000647 "leptospirosis"@en) SubClassOf(obo:IDO_0000647 obo:IDO_0000586) # Class: obo:IDO_0000648 (Shigellosis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000648 "An infection located in the bowel and that has as part organisms of the Genus Shigella."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000648 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000648 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000648 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000648 "Shigellosis"@en) SubClassOf(obo:IDO_0000648 obo:IDO_0000586) # Class: obo:IDO_0000649 (amebiasis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000649 "An infection located in the colon and that has as part organisms of the Species Entamoeba histolytica"@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000649 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000649 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000649 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000649 "amebiasis"@en) SubClassOf(obo:IDO_0000649 obo:IDO_0000586) # Class: obo:IDO_0000650 (colonization of human) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000650 "A colonization of host process in which the host is of Species Homo sapiens."@en) AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000650 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000650 "Alexander Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000650 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000650 "colonization of human"@en) SubClassOf(obo:IDO_0000650 obo:IDO_0000604) # Class: obo:IDO_0000651 (primary immunodeficiency) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000651 "An immunodeficiency that exists in an organism because of a genetic predisposition.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000651 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000651 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000651 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000651 "congenital immunodeficiency") AnnotationAssertion(rdfs:label obo:IDO_0000651 "primary immunodeficiency") SubClassOf(obo:IDO_0000651 obo:IDO_0000617) # Class: obo:IDO_0000652 (colonization of human perineum) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000652 "A colonization of human process in which the colonized site is a perineum.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000652 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000652 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000652 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000652 "colonization of human perineum") SubClassOf(obo:IDO_0000652 obo:IDO_0000650) # Class: obo:IDO_0000653 (reverse zoonosis) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000653 "An infectious disease that has as its physical basis an infectious disorder composed of infectious agents that have a reverse zoonotic disposition.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000653 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000653 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000653 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000653 "reverse zoonosis") EquivalentClasses(obo:IDO_0000653 ObjectIntersectionOf(obo:IDO_0000436 ObjectSomeValuesFrom(obo:IDO_0000664 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000454))))) ObjectSomeValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000454))))))))) ObjectAllValuesFrom(obo:IDO_0000664 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000454))))) ObjectAllValuesFrom(obo:RO_0000052 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:OGMS_0000087 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000504 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:IDO_0000596 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000454))))))))))) SubClassOf(obo:IDO_0000653 obo:IDO_0000436) # Class: obo:IDO_0000654 (opportunistic pathogen) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000654 "An infectious agent with an opportunistic infectious disposition.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000654 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000654 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000654 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000118 obo:IDO_0000654 "opportunist") AnnotationAssertion(rdfs:label obo:IDO_0000654 "opportunistic pathogen") EquivalentClasses(obo:IDO_0000654 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000091 obo:IDO_0000406))) SubClassOf(obo:IDO_0000654 obo:IDO_0000596) # Class: obo:IDO_0000655 (transmissibility disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000655 "A disposition to undergo a transmission process.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000655 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000655 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000655 "Lindsay Cowell") AnnotationAssertion(rdfs:comment obo:IDO_0000655 "The disposition is realized in a transmission process.") AnnotationAssertion(rdfs:label obo:IDO_0000655 "transmissibility disposition") SubClassOf(obo:IDO_0000655 obo:BFO_0000016) SubClassOf(obo:IDO_0000655 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:IDO_0000528) ObjectAllValuesFrom(obo:BFO_0000054 obo:TRANS_0000000))) DisjointClasses(obo:IDO_0000655 obo:OGMS_0000031) # Class: obo:IDO_0000656 (horizontal pathogen transmission process) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000656 "A pathogen transmission process in which a pathogen is transmitted from one host to another of the same Species, and the two hosts are not in a parent-child relationship.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000656 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000656 "horizontal pathogen transmission process") SubClassOf(obo:IDO_0000656 obo:TRANS_0000000) # Class: obo:IDO_0000657 (process that results in death) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000657 "A process that results in death.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000657 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000657 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000657 "process that results in death") SubClassOf(obo:IDO_0000657 obo:BFO_0000015) # Class: obo:IDO_0000658 (host exposure to infectious agent) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000658 "A process in which a potential host of an infectious agent is exposed to an infectious agent.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000658 "Bjoern Peters") AnnotationAssertion(rdfs:label obo:IDO_0000658 "host exposure to infectious agent") SubClassOf(obo:IDO_0000658 obo:BFO_0000015) # Class: obo:IDO_0000659 (susceptible organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000659 "An organism that is not infected with an infectious agent and lacks protective immunity to the infectious agent.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000659 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000659 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000659 "susceptible organism") SubClassOf(obo:IDO_0000659 obo:OBI_0100026) # Class: obo:IDO_0000662 (life-sustaining process) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000662 "A process which is necessary for the survival of an organism.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000662 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000662 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000662 "life-sustaining process") SubClassOf(obo:IDO_0000662 obo:GO_0008150) # Class: obo:IDO_0000663 (negative regulation of life-sustaining process) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000663 "Any process that stops, prevents, or reduces the frequency, rate or extent of a life-sustaining process.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000663 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000663 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000663 "negative regulation of life-sustaining process") EquivalentClasses(obo:IDO_0000663 ObjectSomeValuesFrom(obo:RO_0002212 obo:IDO_0000662)) SubClassOf(obo:IDO_0000663 obo:GO_0065007) # Class: obo:IDO_0000665 (source of infection) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000665 "A material entity bearing a source of infection role.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000665 "Albert Goldfain") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000665 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0000665 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0000665 "source of infection") EquivalentClasses(obo:IDO_0000665 ObjectIntersectionOf(obo:BFO_0000040 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000635))) SubClassOf(obo:IDO_0000665 obo:BFO_0000040) # Class: obo:IDO_0000666 (human pathogenicity disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000666 "A disposition to initiate processes that result in a disorder in a human organism.") AnnotationAssertion(rdfs:label obo:IDO_0000666 "human pathogenicity disposition"@en) SubClassOf(obo:IDO_0000666 obo:IDO_0000450) # Class: obo:IDO_0000667 (parasitic disposition) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0000667 "A disposition to participate in a process of symbiosis in which the bearer derives a growth, survival, or fitness advantage from symbiosis while the other symbiont's growth, survival, or fitness is reduced.") AnnotationAssertion(rdfs:label obo:IDO_0000667 "parasitic disposition"@en) SubClassOf(obo:IDO_0000667 obo:BFO_0000016) # Class: obo:IDO_0001002 (transition to clinical abnormality) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001002 "A process by which a part of an organism or something contained in an organism becomes clinically abnormal.") AnnotationAssertion(rdfs:label obo:IDO_0001002 "transition to clinical abnormality") SubClassOf(obo:IDO_0001002 obo:BFO_0000015) # Class: obo:IDO_0001003 (infection-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001003 "A pathologic immunosuppression process which arises as the result of an infection and is initiated or dysregulated by the infectious agent population.") AnnotationAssertion(obo:IAO_0000116 obo:IDO_0001003 "The definition should perhaps read \"as the result of an infectious disorder\".") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001003 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001003 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001003 "infection-based immunosuppression"@en) SubClassOf(obo:IDO_0001003 obo:IDO_0000612) # Class: obo:IDO_0001004 (HIV-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001004 "An infection-based immunosuppression process which arises as the result of an HIV infection.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001004 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001004 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001004 "HIV-based immunosuppression"@en) SubClassOf(obo:IDO_0001004 obo:IDO_0001003) # Class: obo:IDO_0001005 (pathologically immunosuppressed organism) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001005 "An immunosuppressed organism that is experiencing pathologic immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001005 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001005 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001005 "pathologically immunosuppressed organism"@en) EquivalentClasses(obo:IDO_0001005 ObjectIntersectionOf(obo:IDO_0000456 ObjectSomeValuesFrom(obo:RO_0000056 obo:IDO_0000612))) SubClassOf(obo:IDO_0001005 obo:IDO_0000456) # Class: obo:IDO_0001006 (immunosuppressed organism experiencing infection-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001006 "A pathologically immunosuppressed organism that is experiencing infection-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001006 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001006 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001006 "immunosuppressed organism experiencing infection-based immunosuppression"@en) EquivalentClasses(obo:IDO_0001006 ObjectIntersectionOf(obo:IDO_0001005 ObjectSomeValuesFrom(obo:RO_0000056 obo:IDO_0001003))) SubClassOf(obo:IDO_0001006 obo:IDO_0001005) # Class: obo:IDO_0001007 (immunosuppressed organism experiencing HIV-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001007 "A pathologically immunosuppressed organism that is experiencing HIV-based immunosuppression.") AnnotationAssertion(obo:IAO_0000116 obo:IDO_0001007 "These individuals may also be immunodeficient due to depletion of CD4+ T cells and other effects of HIV.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001007 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001007 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001007 "immunosuppressed organism experiencing HIV-based immunosuppression"@en) SubClassOf(obo:IDO_0001007 obo:IDO_0001006) # Class: obo:IDO_0001008 (immunosuppressed human experiencing HIV-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001008 "An immunosuppressed organism that is a human experiencing HIV-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001008 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001008 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000234 obo:IDO_0001008 "NCI BBRB") AnnotationAssertion(rdfs:label obo:IDO_0001008 "immunosuppressed human experiencing HIV-based immunosuppression"@en) SubClassOf(obo:IDO_0001008 obo:IDO_0001007) # Class: obo:IDO_0001009 (drug-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001009 "A pathologic immunosuppression process which arises as the result of treatment with a drug that attenuates immune responses.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001009 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001009 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001009 "drug-based immunosuppression"@en) SubClassOf(obo:IDO_0001009 obo:IDO_0000612) # Class: obo:IDO_0001010 (chronic systemic steroid use-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001010 "A drug-based immunosuppression process that results from chronic systemic steroid use.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001010 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001010 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001010 "chronic systemic steroid use-based immunosuppression"@en) SubClassOf(obo:IDO_0001010 obo:IDO_0001009) # Class: obo:IDO_0001011 (immunosuppressed organism experiencing drug-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001011 "A pathologically immunosuppressed organism that is experiencing drug-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001011 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001011 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001011 "immunosuppressed organism experiencing drug-based immunosuppression"@en) EquivalentClasses(obo:IDO_0001011 ObjectIntersectionOf(obo:IDO_0001005 ObjectSomeValuesFrom(obo:RO_0000056 obo:IDO_0001009))) SubClassOf(obo:IDO_0001011 obo:IDO_0001005) # Class: obo:IDO_0001012 (immunosuppressed organism experiencing chronic systemic steroid use-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001012 "a pathologically immunosuppressed organism that is experiencing chronic systemic steroid use-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001012 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001012 "Lindsay Cowell") AnnotationAssertion(rdfs:label obo:IDO_0001012 "immunosuppressed organism experiencing chronic systemic steroid use-based immunosuppression"@en) SubClassOf(obo:IDO_0001012 obo:IDO_0001011) # Class: obo:IDO_0001013 (immunosuppressed human experiencing chronic systemic steroid use-based immunosuppression) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001013 "An immunosuppressed organism that is a human experiencing chronic systemic steroid use-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001013 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001013 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000234 obo:IDO_0001013 "NCI BBRB") AnnotationAssertion(rdfs:label obo:IDO_0001013 "immunosuppressed human experiencing chronic systemic steroid use-based immunosuppression"@en) SubClassOf(obo:IDO_0001013 obo:IDO_0001012) # Class: obo:IDO_0001014 (immunosuppressed human experiencing drug-based immunosuppression due to organ transplant) AnnotationAssertion(obo:IAO_0000115 obo:IDO_0001014 "A pathologically immunosuppressed organism that is a human experiencing drug-based immunosuppression.") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001014 "Alex Diehl") AnnotationAssertion(obo:IAO_0000117 obo:IDO_0001014 "Lindsay Cowell") AnnotationAssertion(obo:IAO_0000234 obo:IDO_0001014 "NCI BBRB") AnnotationAssertion(rdfs:label obo:IDO_0001014 "immunosuppressed human experiencing drug-based immunosuppression due to organ transplant"@en) SubClassOf(obo:IDO_0001014 obo:IDO_0001011) # Class: obo:MONDO_0002428 (parasitic protozoa infectious disease) AnnotationAssertion(obo:IAO_0000115 obo:MONDO_0002428 "A parasitic infectious disease that is caused by parasitic protozoa which are microorganisms classified as unicellular eukaryotes.") AnnotationAssertion(obo:IAO_0000412 obo:MONDO_0002428 obo:doid.owl) AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0002428 "DOID:0060003") AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0002428 "DOID:10553") AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0002428 "DOID:3734") AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0002428 "DOID:3804") AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0002428 "DOID:947") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0002428 "ICD10CM:B64") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0002428 "MESH:D011528") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0002428 "NCI:C34953") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0002428 "SNOMEDCT_US_2023_03_01:95896000") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0002428 "UMLS_CUI:C0033740") AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0002428 "mastigophora infectious disease"@en) AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0002428 "sarcomastigophora infectious disease"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:MONDO_0002428 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:MONDO_0002428 "DOID:2789") AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0002428 ) AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0002428 ) AnnotationAssertion(rdfs:label obo:MONDO_0002428 "parasitic protozoa infectious disease") SubClassOf(obo:MONDO_0002428 obo:DOID_1398) # Class: obo:MONDO_0005136 (malaria) AnnotationAssertion(obo:IAO_0000115 obo:MONDO_0005136 "A parasitic protozoa infectious disease characterized as a vector-borne infectious disease caused by the presence of protozoan parasites of the genus Plasmodium in the red blood cells, transmitted from an infected to an uninfected individual by the bite of anopheline mosquitoes, and characterized by periodic attacks of chills and fever that coincide with mass destruction of blood cells and the release of toxic substances by the parasite at the end of each reproductive cycle.") AnnotationAssertion(obo:IAO_0000412 obo:MONDO_0005136 obo:doid.owl) AnnotationAssertion(oboInOwl:hasAlternativeId obo:MONDO_0005136 "DOID:12552") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "EFO:0001068") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "GARD:6961") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "ICD10CM:B54") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "ICD9CM:084") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "MESH:D008288") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "NCI:C34797") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "SNOMEDCT_US_2023_03_01:154374002") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005136 "UMLS_CUI:C0024530") AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0005136 "induced malaria"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:MONDO_0005136 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:MONDO_0005136 "DOID:12365") AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0005136 ) AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0005136 ) AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0005136 ) AnnotationAssertion(rdfs:comment obo:MONDO_0005136 "Xref MGI.") AnnotationAssertion(rdfs:label obo:MONDO_0005136 "malaria") SubClassOf(obo:MONDO_0005136 obo:MONDO_0002428) # Class: obo:MONDO_0005920 (Plasmodium falciparum malaria) AnnotationAssertion(obo:IAO_0000115 obo:MONDO_0005920 "A malaria described as a severe form of the disease caused by a parasite Plasmodium falciparum, which is marked by irrregular recurrence of paroxysms and prolonged or continuous fever.") AnnotationAssertion(obo:IAO_0000412 obo:MONDO_0005920 obo:doid.owl) AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "ICD10CM:B50") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "ICD9CM:084.0") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "MESH:D016778") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "NCI:C34798") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "SNOMEDCT_US_2023_03_01:62676009") AnnotationAssertion(oboInOwl:hasDbXref obo:MONDO_0005920 "UMLS_CUI:C0024535") AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0005920 "Malaria fever, subtertian"@en) AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0005920 "falciparum malaria"@en) AnnotationAssertion(oboInOwl:hasExactSynonym obo:MONDO_0005920 "malignant tertian fever"@en) AnnotationAssertion(oboInOwl:hasOBONamespace obo:MONDO_0005920 "disease_ontology") AnnotationAssertion(oboInOwl:id obo:MONDO_0005920 "DOID:14067") AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0005920 ) AnnotationAssertion(oboInOwl:inSubset obo:MONDO_0005920 ) AnnotationAssertion(rdfs:label obo:MONDO_0005920 "Plasmodium falciparum malaria") SubClassOf(obo:MONDO_0005920 obo:MONDO_0005136) # Class: obo:NCBITaxon_1 (root) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_1 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_1 "root") SubClassOf(obo:NCBITaxon_1 oboInOwl:ObsoleteClass) # Class: obo:NCBITaxon_10090 (Mus musculus) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_10090 "house mouse") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_10090 "mouse") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_10090 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_10090 "Mus musculus") SubClassOf(obo:NCBITaxon_10090 obo:NCBITaxon_40674) # Class: obo:NCBITaxon_10239 (Viruses) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_10239 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_10239 "Viruses") SubClassOf(obo:NCBITaxon_10239 obo:OBI_0100026) # Class: obo:NCBITaxon_157969 (Bulinus) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_157969 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_157969 "Bulinus") SubClassOf(obo:NCBITaxon_157969 obo:NCBITaxon_6447) SubClassOf(obo:NCBITaxon_157969 obo:NCBITaxon_6524) SubClassOf(obo:NCBITaxon_157969 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410)) # Class: obo:NCBITaxon_2 (Bacteria) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_2 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_2 "Bacteria") SubClassOf(obo:NCBITaxon_2 obo:OBI_0100026) # Class: obo:NCBITaxon_2157 (Archaea) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_2157 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_2157 "Archaea") SubClassOf(obo:NCBITaxon_2157 obo:OBI_0100026) # Class: obo:NCBITaxon_2759 (Eukaryota) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_2759 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_2759 "Eukaryota") SubClassOf(obo:NCBITaxon_2759 obo:OBI_0100026) # Class: obo:NCBITaxon_29176 (Neospora caninum) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_29176 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_29176 "Neospora caninum") SubClassOf(obo:NCBITaxon_29176 obo:IDO_0000526) SubClassOf(obo:NCBITaxon_29176 obo:NCBITaxon_5809) SubClassOf(obo:NCBITaxon_29176 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_29176 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_29176 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9611)) SubClassOf(obo:NCBITaxon_29176 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9913)) # Class: obo:NCBITaxon_32524 (Amniota) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_32524 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_32524 "Amniota") SubClassOf(obo:NCBITaxon_32524 obo:NCBITaxon_33213) # Class: obo:NCBITaxon_33154 (Opisthokonta) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_33154 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_33154 "Opisthokonta") SubClassOf(obo:NCBITaxon_33154 obo:NCBITaxon_2759) # Class: obo:NCBITaxon_33208 (Metazoa) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_33208 obo:ncbitaxon.owl) AnnotationAssertion(ncbitaxon:has_rank obo:NCBITaxon_33208 obo:NCBITaxon_kingdom) AnnotationAssertion(oboInOwl:hasDbXref obo:NCBITaxon_33208 "GC_ID:1") AnnotationAssertion(oboInOwl:hasExactSynonym obo:NCBITaxon_33208 "metazoans") AnnotationAssertion(oboInOwl:hasExactSynonym obo:NCBITaxon_33208 "multicellular animals") AnnotationAssertion(oboInOwl:hasOBONamespace obo:NCBITaxon_33208 "ncbi_taxonomy") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:NCBITaxon_33208 "Animalia") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:NCBITaxon_33208 "animals") AnnotationAssertion(rdfs:label obo:NCBITaxon_33208 "Metazoa") SubClassOf(obo:NCBITaxon_33208 obo:NCBITaxon_33154) # Class: obo:NCBITaxon_33213 (Bilateria) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_33213 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_33213 "Bilateria") SubClassOf(obo:NCBITaxon_33213 obo:NCBITaxon_33154) # Class: obo:NCBITaxon_33317 (Protostomia) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_33317 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_33317 "Protostomia") SubClassOf(obo:NCBITaxon_33317 obo:NCBITaxon_33213) # Class: obo:NCBITaxon_33340 (Neoptera) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_33340 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_33340 "Neoptera") SubClassOf(obo:NCBITaxon_33340 obo:NCBITaxon_33317) # Class: obo:NCBITaxon_40674 (Mammalia) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_40674 "mammals") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_40674 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_40674 "Mammalia") SubClassOf(obo:NCBITaxon_40674 obo:NCBITaxon_32524) SubClassOf(obo:NCBITaxon_40674 obo:NCBITaxon_7742) SubClassOf(obo:NCBITaxon_40674 ObjectSomeValuesFrom(obo:RO_0000087 obo:OBI_0000725)) # Class: obo:NCBITaxon_42890 (Sarcocystis neurona) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_42890 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_42890 "Sarcocystis neurona") SubClassOf(obo:NCBITaxon_42890 obo:IDO_0000526) SubClassOf(obo:NCBITaxon_42890 obo:NCBITaxon_2759) SubClassOf(obo:NCBITaxon_42890 obo:NCBITaxon_5809) SubClassOf(obo:NCBITaxon_42890 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_42890 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_42890 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9615)) # Class: obo:NCBITaxon_50557 (Insecta) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_50557 "true insects") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_50557 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_50557 "Insecta") SubClassOf(obo:NCBITaxon_50557 obo:OBI_0100026) # Class: obo:NCBITaxon_5280 (Tilletiaria) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5280 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5280 "Tilletiaria") SubClassOf(obo:NCBITaxon_5280 obo:NCBITaxon_33154) # Class: obo:NCBITaxon_56140 (Oncomelania) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_56140 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_56140 "Oncomelania") SubClassOf(obo:NCBITaxon_56140 obo:NCBITaxon_6447) SubClassOf(obo:NCBITaxon_56140 obo:NCBITaxon_6448) SubClassOf(obo:NCBITaxon_56140 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410)) # Class: obo:NCBITaxon_5654 (Trypanosomatidae) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5654 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5654 "Trypanosomatidae") SubClassOf(obo:NCBITaxon_5654 obo:OPL_0000232) # Class: obo:NCBITaxon_5658 (Leishmania ) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_5658 "Leishmania") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5658 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5658 "Leishmania ") SubClassOf(obo:NCBITaxon_5658 obo:NCBITaxon_5654) # Class: obo:NCBITaxon_5659 (Leishmania amazonensis) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5659 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5659 "Leishmania amazonensis") SubClassOf(obo:NCBITaxon_5659 obo:NCBITaxon_5658) SubClassOf(obo:NCBITaxon_5659 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5659 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5659 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5659 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7198)) # Class: obo:NCBITaxon_5661 (Leishmania donovani) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5661 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5661 "Leishmania donovani") SubClassOf(obo:NCBITaxon_5661 obo:NCBITaxon_5658) SubClassOf(obo:NCBITaxon_5661 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5661 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5661 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9606)) SubClassOf(obo:NCBITaxon_5661 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7198)) # Class: obo:NCBITaxon_5664 (Leishmania major) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5664 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5664 "Leishmania major") SubClassOf(obo:NCBITaxon_5664 obo:NCBITaxon_5658) SubClassOf(obo:NCBITaxon_5664 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5664 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5664 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5664 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7198)) # Class: obo:NCBITaxon_5671 (Leishmania infantum) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5671 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5671 "Leishmania infantum") SubClassOf(obo:NCBITaxon_5671 obo:NCBITaxon_5658) SubClassOf(obo:NCBITaxon_5671 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5671 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5671 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5671 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7198)) # Class: obo:NCBITaxon_5690 (Trypanosoma) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5690 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5690 "Trypanosoma") SubClassOf(obo:NCBITaxon_5690 obo:IDO_0000526) SubClassOf(obo:NCBITaxon_5690 obo:NCBITaxon_2759) SubClassOf(obo:NCBITaxon_5690 obo:NCBITaxon_5654) # Class: obo:NCBITaxon_5691 (Trypanosoma brucei) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5691 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5691 "Trypanosoma brucei") SubClassOf(obo:NCBITaxon_5691 obo:NCBITaxon_5690) SubClassOf(obo:NCBITaxon_5691 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5691 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5691 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5691 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7393)) # Class: obo:NCBITaxon_5693 (Trypanosoma cruzi) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5693 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5693 "Trypanosoma cruzi") SubClassOf(obo:NCBITaxon_5693 obo:NCBITaxon_5690) SubClassOf(obo:NCBITaxon_5693 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5693 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5693 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5693 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_70999)) # Class: obo:NCBITaxon_5800 (Eimeria) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5800 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5800 "Eimeria") SubClassOf(obo:NCBITaxon_5800 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_5800 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_7742)) # Class: obo:NCBITaxon_5801 (Eimeria acervulina) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5801 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5801 "Eimeria acervulina") SubClassOf(obo:NCBITaxon_5801 obo:NCBITaxon_5800) SubClassOf(obo:NCBITaxon_5801 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5801 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9031)) # Class: obo:NCBITaxon_5802 (Eimeria tenella) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5802 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5802 "Eimeria tenella") SubClassOf(obo:NCBITaxon_5802 obo:NCBITaxon_5800) SubClassOf(obo:NCBITaxon_5802 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5802 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9031)) # Class: obo:NCBITaxon_5804 (Eimeria maxima) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5804 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5804 "Eimeria maxima") SubClassOf(obo:NCBITaxon_5804 obo:NCBITaxon_5800) SubClassOf(obo:NCBITaxon_5804 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5804 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9031)) # Class: obo:NCBITaxon_5806 (Cryptosporidium) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5806 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5806 "Cryptosporidium") SubClassOf(obo:NCBITaxon_5806 obo:OPL_0000232) # Class: obo:NCBITaxon_5807 (Cryptosporidium parvum) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5807 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5807 "Cryptosporidium parvum") SubClassOf(obo:NCBITaxon_5807 obo:NCBITaxon_5806) SubClassOf(obo:NCBITaxon_5807 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5807 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) # Class: obo:NCBITaxon_5809 (Sarcocystidae) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5809 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5809 "Sarcocystidae") SubClassOf(obo:NCBITaxon_5809 obo:NCBITaxon_2759) # Class: obo:NCBITaxon_5811 (Toxoplasma gondii) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5811 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5811 "Toxoplasma gondii") SubClassOf(obo:NCBITaxon_5811 obo:IDO_0000526) SubClassOf(obo:NCBITaxon_5811 obo:NCBITaxon_2759) SubClassOf(obo:NCBITaxon_5811 obo:NCBITaxon_5809) SubClassOf(obo:NCBITaxon_5811 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_5811 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5811 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5811 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5811 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_70999)) # Class: obo:NCBITaxon_5820 (Plasmodium) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5820 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5820 "Plasmodium") SubClassOf(obo:NCBITaxon_5820 obo:IDO_0000526) SubClassOf(obo:NCBITaxon_5820 obo:NCBITaxon_2759) SubClassOf(obo:NCBITaxon_5820 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_5820 obo:PIDO_0000004) SubClassOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_7742)) SubClassOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5821 (Plasmodium berghei) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5821 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5821 "Plasmodium berghei") SubClassOf(obo:NCBITaxon_5821 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5821 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5821 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_5821 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5825 (Plasmodium chabaudi) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5825 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5825 "Plasmodium chabaudi") SubClassOf(obo:NCBITaxon_5825 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5825 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9443)) SubClassOf(obo:NCBITaxon_5825 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5833 (Plasmodium falciparum) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_5833 "malaria parasite P. falciparum") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5833 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5833 "Plasmodium falciparum") SubClassOf(obo:NCBITaxon_5833 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5833 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5833 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9606)) SubClassOf(obo:NCBITaxon_5833 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5850 (Plasmodium knowlesi) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5850 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5850 "Plasmodium knowlesi") SubClassOf(obo:NCBITaxon_5850 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5850 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9443)) SubClassOf(obo:NCBITaxon_5850 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5855 (Plasmodium vivax) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_5855 "malaria parasite P. vivax") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5855 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5855 "Plasmodium vivax") SubClassOf(obo:NCBITaxon_5855 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5855 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_5855 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_7742)) SubClassOf(obo:NCBITaxon_5855 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_5861 (Plasmodium yoelii) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_5861 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_5861 "Plasmodium yoelii") SubClassOf(obo:NCBITaxon_5861 obo:NCBITaxon_5820) SubClassOf(obo:NCBITaxon_5861 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_9443)) SubClassOf(obo:NCBITaxon_5861 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_7164)) # Class: obo:NCBITaxon_6181 (Schistosoma) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6181 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6181 "Schistosoma") SubClassOf(obo:NCBITaxon_6181 obo:OPL_0000232) SubClassOf(obo:NCBITaxon_6181 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) # Class: obo:NCBITaxon_6182 (Schistosoma japonicum) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6182 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6182 "Schistosoma japonicum") SubClassOf(obo:NCBITaxon_6182 obo:NCBITaxon_6181) SubClassOf(obo:NCBITaxon_6182 obo:PIDO_0000003) SubClassOf(obo:NCBITaxon_6182 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_6182 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_6182 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_56140)) # Class: obo:NCBITaxon_6183 (Schistosoma mansoni) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6183 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6183 "Schistosoma mansoni") SubClassOf(obo:NCBITaxon_6183 obo:NCBITaxon_6181) SubClassOf(obo:NCBITaxon_6183 obo:PIDO_0000003) SubClassOf(obo:NCBITaxon_6183 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_6183 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_6183 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_6525)) # Class: obo:NCBITaxon_6185 (Schistosoma haematobium) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6185 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6185 "Schistosoma haematobium") SubClassOf(obo:NCBITaxon_6185 obo:NCBITaxon_6181) SubClassOf(obo:NCBITaxon_6185 obo:PIDO_0000003) SubClassOf(obo:NCBITaxon_6185 ObjectSomeValuesFrom(obo:RO_0000087 obo:OPL_0000171)) SubClassOf(obo:NCBITaxon_6185 ObjectSomeValuesFrom(obo:RO_0002454 obo:NCBITaxon_40674)) SubClassOf(obo:NCBITaxon_6185 ObjectSomeValuesFrom(obo:RO_0002460 obo:NCBITaxon_157969)) # Class: obo:NCBITaxon_6447 (Mollusca) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_6447 "molluscs") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_6447 "mollusks") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6447 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6447 "Mollusca") SubClassOf(obo:NCBITaxon_6447 obo:OBI_0100026) # Class: obo:NCBITaxon_6448 (Gastropoda) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6448 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6448 "Gastropoda") SubClassOf(obo:NCBITaxon_6448 obo:NCBITaxon_33317) # Class: obo:NCBITaxon_6524 (Planorbidae) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6524 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6524 "Planorbidae") SubClassOf(obo:NCBITaxon_6524 obo:NCBITaxon_6448) # Class: obo:NCBITaxon_6525 (Biomphalaria) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_6525 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_6525 "Biomphalaria") SubClassOf(obo:NCBITaxon_6525 obo:NCBITaxon_6447) SubClassOf(obo:NCBITaxon_6525 obo:NCBITaxon_6524) SubClassOf(obo:NCBITaxon_6525 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410)) # Class: obo:NCBITaxon_70999 (Triatominae) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_70999 "kissing bugs") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_70999 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_70999 "Triatominae") SubClassOf(obo:NCBITaxon_70999 obo:NCBITaxon_33340) SubClassOf(obo:NCBITaxon_70999 obo:NCBITaxon_50557) SubClassOf(obo:NCBITaxon_70999 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000420)) # Class: obo:NCBITaxon_7147 (Diptera) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7147 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_7147 "Diptera") SubClassOf(obo:NCBITaxon_7147 obo:NCBITaxon_33340) # Class: obo:NCBITaxon_7148 (Nematocera) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7148 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_7148 "Nematocera") SubClassOf(obo:NCBITaxon_7148 obo:NCBITaxon_7147) # Class: obo:NCBITaxon_7164 (Anopheles ) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7164 "Anopheles") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7164 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_7164 "Anopheles ") SubClassOf(obo:NCBITaxon_7164 obo:NCBITaxon_50557) SubClassOf(obo:NCBITaxon_7164 obo:NCBITaxon_7148) SubClassOf(obo:NCBITaxon_7164 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000420)) # Class: obo:NCBITaxon_7198 (Phlebotominae) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7198 "sand flies") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7198 "sandflies") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7198 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_7198 "Phlebotominae") SubClassOf(obo:NCBITaxon_7198 obo:NCBITaxon_50557) SubClassOf(obo:NCBITaxon_7198 obo:NCBITaxon_7148) SubClassOf(obo:NCBITaxon_7198 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000420)) # Class: obo:NCBITaxon_7393 (Glossina ) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7393 "Glossina") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7393 "tsetse flies") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7393 "tsetse fly") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7393 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_7393 "Glossina ") SubClassOf(obo:NCBITaxon_7393 obo:NCBITaxon_50557) SubClassOf(obo:NCBITaxon_7393 obo:NCBITaxon_7147) SubClassOf(obo:NCBITaxon_7393 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000420)) # Class: obo:NCBITaxon_7742 (Vertebrata ) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7742 "Vertebrata") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_7742 "vertebrates") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_7742 obo:ncbitaxon.owl) AnnotationAssertion(ncbitaxon:has_rank obo:NCBITaxon_7742 obo:NCBITaxon_clade) AnnotationAssertion(oboInOwl:hasDbXref obo:NCBITaxon_7742 "GC_ID:1") AnnotationAssertion(oboInOwl:hasExactSynonym obo:NCBITaxon_7742 "Vertebrata") AnnotationAssertion(oboInOwl:hasExactSynonym obo:NCBITaxon_7742 "vertebrates") AnnotationAssertion(oboInOwl:hasOBONamespace obo:NCBITaxon_7742 "ncbi_taxonomy") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:NCBITaxon_7742 "vertebrates") AnnotationAssertion(rdfs:label obo:NCBITaxon_7742 "Vertebrata ") SubClassOf(obo:NCBITaxon_7742 obo:NCBITaxon_33213) SubClassOf(obo:NCBITaxon_7742 obo:OBI_0100026) # Class: obo:NCBITaxon_9031 (Gallus gallus) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9031 "Gallus domesticus") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9031 "bantam") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9031 "chicken") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9031 "chickens") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9031 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9031 "Gallus gallus") SubClassOf(obo:NCBITaxon_9031 obo:NCBITaxon_32524) SubClassOf(obo:NCBITaxon_9031 obo:NCBITaxon_7742) SubClassOf(obo:NCBITaxon_9031 ObjectSomeValuesFrom(obo:RO_0000087 obo:OBI_0000725)) # Class: obo:NCBITaxon_9443 (Primates) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9443 "primate") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9443 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9443 "Primates") SubClassOf(obo:NCBITaxon_9443 obo:NCBITaxon_40674) # Class: obo:NCBITaxon_9606 (Homo sapiens) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9606 "human") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9606 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9606 "Homo sapiens") SubClassOf(obo:NCBITaxon_9606 obo:NCBITaxon_40674) SubClassOf(obo:NCBITaxon_9606 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000409)) # Class: obo:NCBITaxon_9611 (Canis) AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9611 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9611 "Canis") SubClassOf(obo:NCBITaxon_9611 obo:NCBITaxon_40674) SubClassOf(obo:NCBITaxon_9611 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000409)) # Class: obo:NCBITaxon_9615 (Canis lupus familiaris) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9615 "dog") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9615 "dogs") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9615 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9615 "Canis lupus familiaris") SubClassOf(obo:NCBITaxon_9615 obo:NCBITaxon_9611) # Class: obo:NCBITaxon_9874 (Odocoileus virginianus) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9874 "white-tailed deer") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9874 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9874 "Odocoileus virginianus") SubClassOf(obo:NCBITaxon_9874 obo:NCBITaxon_40674) SubClassOf(obo:NCBITaxon_9874 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410)) # Class: obo:NCBITaxon_9913 (Bos taurus) AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "bovine") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "cattle") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "cow") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "dairy cow") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "domestic cattle") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "domestic cow") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "ox") AnnotationAssertion(obo:IAO_0000118 obo:NCBITaxon_9913 "oxen") AnnotationAssertion(obo:IAO_0000412 obo:NCBITaxon_9913 obo:ncbitaxon.owl) AnnotationAssertion(rdfs:label obo:NCBITaxon_9913 "Bos taurus") SubClassOf(obo:NCBITaxon_9913 obo:NCBITaxon_40674) SubClassOf(obo:NCBITaxon_9913 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000410)) # Class: obo:OBI_0000725 (host role) AnnotationAssertion(obo:IAO_0000115 obo:OBI_0000725 "host role is a role played by an organism and realized by providing nourishment, shelter or a means of reproduction to another organism within the organism playing the host role") AnnotationAssertion(obo:IAO_0000412 obo:OBI_0000725 obo:obi.owl) AnnotationAssertion(rdfs:label obo:OBI_0000725 "host role") SubClassOf(obo:OBI_0000725 oboInOwl:ObsoleteClass) # Class: obo:OBI_0100026 (organism) AnnotationAssertion(obo:IAO_0000115 obo:OBI_0100026 "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en) AnnotationAssertion(obo:IAO_0000412 obo:OBI_0100026 obo:obi.owl) AnnotationAssertion(rdfs:label obo:OBI_0100026 "organism"@en) EquivalentClasses(obo:OBI_0100026 ObjectUnionOf(obo:NCBITaxon_10239 obo:NCBITaxon_2 obo:NCBITaxon_2157 obo:NCBITaxon_2759)) SubClassOf(obo:OBI_0100026 obo:BFO_0000040) DisjointClasses(obo:OBI_0100026 obo:OGMS_0000045) # Class: obo:OGMS_0000020 (symptom) AnnotationAssertion(obo:IAO_0000115 obo:OGMS_0000020 "A quality of a patient that is observed by the patient or a processual entity experienced by the patient, either of which is hypothesized by the patient to be a realization of a disease."@en) AnnotationAssertion(obo:IAO_0000412 obo:OGMS_0000020 obo:ogms.owl) AnnotationAssertion(rdfs:label obo:OGMS_0000020 "symptom") SubClassOf(obo:OGMS_0000020 obo:BFO_0000001) # Class: obo:OGMS_0000031 (disease) AnnotationAssertion(obo:IAO_0000115 obo:OGMS_0000031 "A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism."@en) AnnotationAssertion(obo:IAO_0000412 obo:OGMS_0000031 obo:ogms.owl) AnnotationAssertion(rdfs:label obo:OGMS_0000031 "disease") SubClassOf(obo:OGMS_0000031 obo:BFO_0000016) # Class: obo:OGMS_0000045 (disorder) AnnotationAssertion(obo:IAO_0000115 obo:OGMS_0000045 "A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease."@en) AnnotationAssertion(obo:IAO_0000412 obo:OGMS_0000045 obo:ogms.owl) AnnotationAssertion(rdfs:label obo:OGMS_0000045 "disorder") SubClassOf(obo:OGMS_0000045 obo:BFO_0000040) # Class: obo:OGMS_0000063 (disease course) AnnotationAssertion(obo:IAO_0000115 obo:OGMS_0000063 "The totality of all processes through which a given disease instance is realized."@en) AnnotationAssertion(obo:IAO_0000412 obo:OGMS_0000063 obo:ogms.owl) AnnotationAssertion(rdfs:label obo:OGMS_0000063 "disease course") SubClassOf(obo:OGMS_0000063 obo:BFO_0000015) # Class: obo:OGMS_0000087 (extended organism) AnnotationAssertion(obo:IAO_0000115 obo:OGMS_0000087 "An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism."@en) AnnotationAssertion(obo:IAO_0000412 obo:OGMS_0000087 obo:ogms.owl) AnnotationAssertion(rdfs:label obo:OGMS_0000087 "extended organism") SubClassOf(obo:OGMS_0000087 obo:BFO_0000027) # Class: obo:OPL_0000002 (Leishmania major metacyclic promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000002 "A Leishmania major promastigote that undergoes a second developmental transition yielding the metacyclic promastigote. This form of parasite is infective to its mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000002 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000002 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000002 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000002 "L. major metacyclic promastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000002 "PMID:11748963") AnnotationAssertion(rdfs:label obo:OPL_0000002 "Leishmania major metacyclic promastigote") SubClassOf(obo:OPL_0000002 obo:OPL_0000016) SubClassOf(obo:OPL_0000002 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000102)) SubClassOf(obo:OPL_0000002 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000015)) SubClassOf(obo:OPL_0000002 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000004 (Triatominae hindgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000004 "A hindgut that is a part of or originated from a Triatominae bug.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000004 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000004 "Triatominae hindgut") EquivalentClasses(obo:OPL_0000004 ObjectIntersectionOf(obo:UBERON_0001046 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_70999))) SubClassOf(obo:OPL_0000004 obo:UBERON_0001046) # Class: obo:OPL_0000005 (Homo sapiens liver) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000005 "A liver that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000005 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000005 "human liver") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000005 "FMA:7197") AnnotationAssertion(rdfs:label obo:OPL_0000005 "Homo sapiens liver") EquivalentClasses(obo:OPL_0000005 ObjectIntersectionOf(obo:UBERON_0002107 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000005 obo:OPL_0000315) # Class: obo:OPL_0000006 (metacyclic promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000006 "A promastigote stage of some kinetoplastids.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000006 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000006 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000006 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000006 "PMID:13129524") AnnotationAssertion(rdfs:label obo:OPL_0000006 "metacyclic promastigote stage") SubClassOf(obo:OPL_0000006 obo:OPL_0000151) SubClassOf(obo:OPL_0000006 obo:OPL_0000322) SubClassOf(obo:OPL_0000006 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000404)) # Class: obo:OPL_0000007 (Plasmodium falciparum exflagellated microgametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000007 "An exflagellated microgametocyte stage in the lifecycle of Plasmodium falciparum that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000007 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000007 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000007 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000007 "P. falciparum exflagellated microgametocyte stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000007 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000007 "Plasmodium falciparum exflagellated microgametocyte stage") EquivalentClasses(obo:OPL_0000007 ObjectIntersectionOf(obo:OPL_0000119 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000007 obo:OPL_0000010) SubClassOf(obo:OPL_0000007 obo:OPL_0000119) SubClassOf(obo:OPL_0000007 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000008 (Schistosoma haematobium sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000008 "A sporocyst stage in the Schistosoma haematobium lifecycle that occurs within the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000008 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000008 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000008 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000008 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000008 "S. haematobium sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000008 "Schistosoma haematobium sporocyst stage") EquivalentClasses(obo:OPL_0000008 ObjectIntersectionOf(obo:OPL_0000098 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000008 obo:OPL_0000098) SubClassOf(obo:OPL_0000008 obo:OPL_0000177) # Class: obo:OPL_0000009 (Schistosoma japonicum cercaria stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000009 "A cercaria stage in the lifecycle of Schistosoma japonicum that occurs in a freshwater snail and in fresh water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000009 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000009 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000009 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000009 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000009 "S. japonicum cercaria stage") AnnotationAssertion(rdfs:label obo:OPL_0000009 "Schistosoma japonicum cercaria stage") EquivalentClasses(obo:OPL_0000009 ObjectIntersectionOf(obo:OPL_0000070 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000009 obo:OPL_0000070) SubClassOf(obo:OPL_0000009 obo:OPL_0000156) # Class: obo:OPL_0000010 (Plasmodium falciparum microgametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000010 "A microgametocyte stage in the Plasmodium falciparum lifecycle that occurs either in the bloodstream of a human host or the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000010 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000010 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000010 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000010 "P. Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000010 "S. Khan.") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000010 "P. falciparum microgametocyte stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000010 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000010 "Plasmodium falciparum microgametocyte stage") EquivalentClasses(obo:OPL_0000010 ObjectIntersectionOf(obo:OPL_0000143 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000010 obo:OPL_0000192) SubClassOf(obo:OPL_0000010 obo:OPL_0000291) SubClassOf(obo:OPL_0000010 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000010 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000011 (Schistosoma haematobium 3 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000011 "A Schistosoma haematobium schistosomulum in a migratory larval form that is found within blood vessels of mammal, as definitive host, 3 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000011 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000011 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000011 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000011 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000011 "S. haematobium 3 hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000011 "Schistosoma haematobium 3 hour schistosomulum") SubClassOf(obo:OPL_0000011 obo:OPL_0000178) SubClassOf(obo:OPL_0000011 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000074)) SubClassOf(obo:OPL_0000011 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000012 (Schistosoma haematobium miracidium) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000012 "A Schistosoma haematobium in a free-living motile form that is covered with cilia and develops in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000012 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000012 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000012 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000012 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000012 "S. haematobium miracidium") AnnotationAssertion(rdfs:label obo:OPL_0000012 "Schistosoma haematobium miracidium") SubClassOf(obo:OPL_0000012 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000012 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000069)) # Class: obo:OPL_0000014 (Schistosoma mansoni 3 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000014 "A 3 days schistosomulum stage of Schistosoma mansoni that occurs in the definitive host 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000014 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000014 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000014 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000014 "S. mansoni 3 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000014 "Schistosoma mansoni 3 day schistosomulum stage") EquivalentClasses(obo:OPL_0000014 ObjectIntersectionOf(obo:OPL_0000221 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000014 obo:OPL_0000100) SubClassOf(obo:OPL_0000014 obo:OPL_0000221) SubClassOf(obo:OPL_0000014 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000316)) # Class: obo:OPL_0000015 (Phlebotominae proboscis) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000015 "A proboscis that is a part of or originated from a sand fly of genus Phlebotominae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000015 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000015 "Phlebotominae proboscis") EquivalentClasses(obo:OPL_0000015 ObjectIntersectionOf(obo:BTO_0001117 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7198))) SubClassOf(obo:OPL_0000015 obo:BTO_0001117) # Class: obo:OPL_0000016 (Leishmania major promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000016 "A Leishmania major that is extracellular and motile form with an anterior flagellum. It grows and divides by longitudinal binary fission in the insect vector; i.e., sandfly.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000016 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000016 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000016 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000016 "L. major promastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000016 "http://dna.kdna.ucla.edu/parasite_course-old/leish_files/introduction1.htm") AnnotationAssertion(rdfs:label obo:OPL_0000016 "Leishmania major promastigote") SubClassOf(obo:OPL_0000016 obo:NCBITaxon_5664) SubClassOf(obo:OPL_0000016 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000189)) SubClassOf(obo:OPL_0000016 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000015)) SubClassOf(obo:OPL_0000016 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000194)) SubClassOf(obo:OPL_0000016 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000017 (3 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000017 "A schistosomulum stage that occurs in 3 hours after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000017 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000017 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000017 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000017 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000017 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000017 "3 hour schistosomulum stage") SubClassOf(obo:OPL_0000017 obo:OPL_0000095) # Class: obo:OPL_0000018 (miracidium stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000018 "A parasite lifecycle stage of Trematodes where the parasite is in free-living motile form, covered with cilia and settles in the mollusc to become a sporocyst.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000018 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000018 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000018 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000018 "Wikipedia: Trematode lifecycle stages") AnnotationAssertion(rdfs:label obo:OPL_0000018 "miracidium stage") SubClassOf(obo:OPL_0000018 obo:OPL_0000181) SubClassOf(obo:OPL_0000018 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000019 (Homo sapiens cerebrospinal fluid) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000019 "Cerebrospinal fluid that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000019 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000019 "human CSF") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000019 "human cerebral spinal fluid") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000019 "human cerebrospinal fluid") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000019 "FMA:20935") AnnotationAssertion(rdfs:label obo:OPL_0000019 "Homo sapiens cerebrospinal fluid") EquivalentClasses(obo:OPL_0000019 ObjectIntersectionOf(obo:UBERON_0001359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000019 obo:OPL_0000313) # Class: obo:OPL_0000020 (Schistosoma japonicum 3 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000020 "A Schistosoma japonicum schistosomulum in a migratory larval form that is found within blood vessels of the mammal, as definitive host, 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000020 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000020 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000020 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000020 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000020 "S. japonicum 3 day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000020 "Schistosoma japonicum 3 day schistosomulum") SubClassOf(obo:OPL_0000020 obo:OPL_0000077) SubClassOf(obo:OPL_0000020 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000159)) SubClassOf(obo:OPL_0000020 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000316)) # Class: obo:OPL_0000021 (Schistosoma japonicum 3 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000021 "A Schistosoma japonicum schistosomulum in a migratory larval form that is found within blood vessels of the mammal, as definitive host, 3 weeks post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000021 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000021 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000021 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000021 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000021 "S. japonicum 3 hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000021 "Schistosoma japonicum 3 hour schistosomulum") SubClassOf(obo:OPL_0000021 obo:OPL_0000077) SubClassOf(obo:OPL_0000021 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000193)) SubClassOf(obo:OPL_0000021 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000022 (bloodstream trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000022 "A trypomastigote stage where trypmastigote form of parasites are found in mammalian host blood stream.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000022 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000022 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000022 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000022 "bloodstream trypomastigote stage") SubClassOf(obo:OPL_0000022 obo:OPL_0000033) # Class: obo:OPL_0000023 (Schistosoma japonicum miracidium stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000023 "A miracidium stage in the Schistosoma japonicum lifecycle that occurs in the intermediate snail host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000023 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000023 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000023 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000023 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000023 "S. japonicum miracidium stage") AnnotationAssertion(rdfs:label obo:OPL_0000023 "Schistosoma japonicum miracidium stage") EquivalentClasses(obo:OPL_0000023 ObjectIntersectionOf(obo:OPL_0000018 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000023 obo:OPL_0000018) SubClassOf(obo:OPL_0000023 obo:OPL_0000156) # Class: obo:OPL_0000024 (Schistosoma japonicum daughter sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000024 "A daughter sporocyst stage of Schistosoma japonicum that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000024 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000024 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000024 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000024 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000024 "S. japonicum daughter sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000024 "Schistosoma japonicum daughter sporocyst stage") EquivalentClasses(obo:OPL_0000024 ObjectIntersectionOf(obo:OPL_0000086 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000024 obo:OPL_0000086) SubClassOf(obo:OPL_0000024 obo:OPL_0000186) SubClassOf(obo:OPL_0000024 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000134)) # Class: obo:OPL_0000025 (Schistosoma mansoni 24 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000025 "A Schistosoma mansoni schistosomulum in a migratory larval formi that is found within blood vessels of the definitive host, mammal, 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000025 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000025 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000025 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000025 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000025 "S. mansoni 24hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000025 "Schistosoma mansoni 24 hour schistosomulum") SubClassOf(obo:OPL_0000025 obo:OPL_0000038) SubClassOf(obo:OPL_0000025 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000063)) SubClassOf(obo:OPL_0000025 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000026 (microgamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000026 "A gamete stage in apicomplexan parasites when exflagellated microgametocyte divides into microgamete.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000026 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000026 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000026 "Matt Berriman") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000026 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000026 "microgamete stage") SubClassOf(obo:OPL_0000026 obo:OPL_0000181) SubClassOf(obo:OPL_0000026 obo:OPL_0000260) SubClassOf(obo:OPL_0000026 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000027 (Homo sapiens skin) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000027 "A skin that is a part of or originated from a human (Homo sapiens) body.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000027 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000027 "human skin") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000027 "FMA:7163") AnnotationAssertion(rdfs:label obo:OPL_0000027 "Homo sapiens skin") EquivalentClasses(obo:OPL_0000027 ObjectIntersectionOf(obo:UBERON_0002097 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000027 obo:OPL_0000314) # Class: obo:OPL_0000028 (macrogametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000028 "A gametocyte stage where a cell differentiates into a female sexual form called macrogametocyte.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000028 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000028 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000028 "Priti Parikh") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000028 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000028 "macrogametocyte stage") SubClassOf(obo:OPL_0000028 obo:OPL_0000150) # Class: obo:OPL_0000029 (Schistosoma haematobium 24 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000029 "A Schistosoma haematobium schistosomulum in a migratory larval form that is found within blood vessels of mammal, as definitive host, 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000029 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000029 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000029 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000029 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000029 "S. haematobium 24 hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000029 "Schistosoma haematobium 24 hour schistosomulum") SubClassOf(obo:OPL_0000029 obo:OPL_0000178) SubClassOf(obo:OPL_0000029 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000129)) SubClassOf(obo:OPL_0000029 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000030 (Schistosoma japonicum daughter sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000030 "A Schistosoma japonicum sporocyst that develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000030 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000030 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000030 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000030 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000030 "S. japonicum daughter sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000030 "Schistosoma japonicum daughter sporocyst") SubClassOf(obo:OPL_0000030 obo:OPL_0000094) SubClassOf(obo:OPL_0000030 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000024)) SubClassOf(obo:OPL_0000030 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000134)) # Class: obo:OPL_0000031 (Trypanosoma brucei procyclic trypomastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000031 "A Trypanosoma brucei trypomastigote that is a dividing form of Trypanosoma brucei found in the midgut of an insect vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000031 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000031 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000031 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000031 "T. brucei procyclic trypomastigote") AnnotationAssertion(rdfs:label obo:OPL_0000031 "Trypanosoma brucei procyclic trypomastigote") SubClassOf(obo:OPL_0000031 obo:OPL_0000182) SubClassOf(obo:OPL_0000031 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000081)) SubClassOf(obo:OPL_0000031 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000215)) # Class: obo:OPL_0000032 (Anopheles midgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000032 "A midgut that is a part of or originated from an Anopheles mosquito.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000032 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000032 "Anopheles midgut") EquivalentClasses(obo:OPL_0000032 ObjectIntersectionOf(obo:UBERON_0001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7164))) SubClassOf(obo:OPL_0000032 obo:UBERON_0001045) # Class: obo:OPL_0000033 (trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000033 "A parasite lifecycle stage of trypanosomes. In trypomastigote stage, the kinetoplast is near the posterior end of the body, and the flagellum lies attached to the cell body for most of its length by an undulating membrane.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000033 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000033 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000033 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000033 "Wikipedia: Trypanosomatid") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000033 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000033 "trypomastigote stage") SubClassOf(obo:OPL_0000033 obo:OPL_0000181) SubClassOf(obo:OPL_0000033 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5690)) # Class: obo:OPL_0000034 (Trypanosoma brucei metacyclic trypomastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000034 "A Trypanosoma brucei trypomastigote that is a non-dividing form infectious for the mammal host. It is found in the salivary gland of an insect vector or blood of a mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000034 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000034 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000034 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000034 "T. brucei metacyclic trypomastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000034 "http://dna.kdna.ucla.edu/parasite_course-old/african%20tryps%20new_files/subchapters/Life%20cycle.htm") AnnotationAssertion(rdfs:label obo:OPL_0000034 "Trypanosoma brucei metacyclic trypomastigote") SubClassOf(obo:OPL_0000034 obo:OPL_0000182) SubClassOf(obo:OPL_0000034 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000056)) SubClassOf(obo:OPL_0000034 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000154)) SubClassOf(obo:OPL_0000034 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000320)) # Class: obo:OPL_0000035 (Plasmodium falciparum erythrocytic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000035 "An erythrocytic schizont stage in the Plasmodium falciparum lifecycle that occurs in the infected erythrocytes of a human host.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000035 "updated according to OPL terms Plasmodium final excel file from C. Janse, S. Khan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000035 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000035 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000035 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000035 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000035 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000035 "P. falciparum erythorcytic schizont stage") AnnotationAssertion(rdfs:label obo:OPL_0000035 "Plasmodium falciparum erythrocytic schizont stage") EquivalentClasses(obo:OPL_0000035 ObjectIntersectionOf(obo:OPL_0000078 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000035 obo:OPL_0000158) SubClassOf(obo:OPL_0000035 obo:OPL_0000298) SubClassOf(obo:OPL_0000035 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000036 (merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000036 "A parasite lifecycle stage of apicomplexan species where a daughter cell, called merozoite is produced from schizont through schizogony.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000036 "adjusted to be more general") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000036 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000036 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000036 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000036 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarM.htm") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000036 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000036 "merozoite stage") SubClassOf(obo:OPL_0000036 obo:OPL_0000181) SubClassOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000037 (Schistosoma haematobium worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000037 "A Schistosoma haematobium is a mature form of Schistosoma haematobium and capable of sexual reproduction, which lives in the pelvic blood vessels of the vesicle plexis of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000037 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000037 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000037 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000037 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000037 "S. haematobium worm") AnnotationAssertion(rdfs:label obo:OPL_0000037 "Schistosoma haematobium worm") SubClassOf(obo:OPL_0000037 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000037 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000091)) # Class: obo:OPL_0000038 (Schistosoma mansoni schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000038 "A Schistosoma mansoni in a migratory larval form that is found within blood vessels of the definitive host, mammal, and develops into the worm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000038 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000038 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000038 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000038 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000038 "S. mansoni schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000038 "Schistosoma mansoni schistosomulum") SubClassOf(obo:OPL_0000038 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000038 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000100)) # Class: obo:OPL_0000039 (Schistosoma japonicum 6 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000039 "A Schistosoma japonicum schistosomulum in a migratory larval form that is found within blood vessels of the mammal, as definitive host, 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000039 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000039 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000039 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000039 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000039 "S. japonicum 6 day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000039 "Schistosoma japonicum 6 day schistosomulum") SubClassOf(obo:OPL_0000039 obo:OPL_0000077) SubClassOf(obo:OPL_0000039 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000046)) SubClassOf(obo:OPL_0000039 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000316)) # Class: obo:OPL_0000040 (Homo sapiens hepatocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000040 "A hepatocyte that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000040 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000040 "human hepatocyte") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000040 "FMA:14515") AnnotationAssertion(rdfs:label obo:OPL_0000040 "Homo sapiens hepatocyte") EquivalentClasses(obo:OPL_0000040 ObjectIntersectionOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000040 obo:OPL_0000312) # Class: obo:OPL_0000041 (Schistosoma mansoni sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000041 "A sporocyst stage in the Schistosoma mansoni lifecycle that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000041 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000041 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000041 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000041 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000041 "S. mansoni sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000041 "Schistosoma mansoni sporocyst stage") EquivalentClasses(obo:OPL_0000041 ObjectIntersectionOf(obo:OPL_0000098 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000041 obo:OPL_0000098) SubClassOf(obo:OPL_0000041 obo:OPL_0000203) # Class: obo:OPL_0000042 (Plasmodium falciparum erythrocytic ring trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000042 "An erythrocytic ring trophozoite stage in the Plasmodium falciparum life cycle that occurs in erythrocytes of a human host. During this stage some Plasmodium falciparum merozoites undergo asexual reproduction cycle in erythrocytes and form young trophozoites that are referred to as \"ring form\" due to their morphology.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000042 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000042 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000042 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000042 "P. falciparum erythrocytic ring trophozoite stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000042 "Wikipedia: Plasmodium falciparum biology") AnnotationAssertion(rdfs:label obo:OPL_0000042 "Plasmodium falciparum erythrocytic ring trophozoite stage") EquivalentClasses(obo:OPL_0000042 ObjectIntersectionOf(obo:OPL_0000140 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000042 obo:OPL_0000207) SubClassOf(obo:OPL_0000042 obo:OPL_0000305) # Class: obo:OPL_0000043 (Schistosoma japonicum cercaria) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000043 "A Schistosoma japonicum in a parasitic larval form that develops in a freshwater snail and is released into the water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000043 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000043 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000043 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000043 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000043 "S. japonicum cercaria") AnnotationAssertion(rdfs:label obo:OPL_0000043 "Schistosoma japonicum cercaria") SubClassOf(obo:OPL_0000043 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000043 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000009)) # Class: obo:OPL_0000044 (procyclic promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000044 "A promastigote stage where the form of parasite is short, ovoid, and slightly motile.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000044 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000044 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000044 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000044 "PMID:13129524") AnnotationAssertion(rdfs:label obo:OPL_0000044 "procyclic promastigote stage") SubClassOf(obo:OPL_0000044 obo:OPL_0000151) SubClassOf(obo:OPL_0000044 obo:OPL_0000323) SubClassOf(obo:OPL_0000044 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0051301)) SubClassOf(obo:OPL_0000044 ObjectSomeValuesFrom(obo:BFO_0000066 ObjectUnionOf(obo:OPL_0000194 obo:OPL_0000215))) # Class: obo:OPL_0000045 (Schistosoma mansoni 6 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000045 "A 6 day schistosomulum stage of Schistosoma mansoni that occurs in the definitive host 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000045 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000045 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000045 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000045 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000045 "S. mansoni 6 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000045 "Schistosoma mansoni 6 day schistosomulum stage") EquivalentClasses(obo:OPL_0000045 ObjectIntersectionOf(obo:OPL_0000066 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000045 obo:OPL_0000066) SubClassOf(obo:OPL_0000045 obo:OPL_0000100) SubClassOf(obo:OPL_0000045 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000316)) # Class: obo:OPL_0000046 (Schistosoma japonicum 6 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000046 "A schistosoma japonicum schistosomulum stage that occurs in the definitive host 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000046 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000046 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000046 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000046 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000046 "S. japonicum 6 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000046 "Schistosoma japonicum 6 day schistosomulum stage") EquivalentClasses(obo:OPL_0000046 ObjectIntersectionOf(obo:OPL_0000118 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000046 obo:OPL_0000095) SubClassOf(obo:OPL_0000046 obo:OPL_0000156) SubClassOf(obo:OPL_0000046 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000316)) # Class: obo:OPL_0000047 (Homo sapiens mesenteric vein) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000047 "A mesenteric vein that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000047 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000047 "human mesenteric vein") AnnotationAssertion(rdfs:label obo:OPL_0000047 "Homo sapiens mesenteric vein") EquivalentClasses(obo:OPL_0000047 ObjectIntersectionOf(obo:UBERON_0005617 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000047 obo:OPL_0000317) # Class: obo:OPL_0000048 (Trypanosoma brucei lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000048 "A lifecycle stage of Trypanosoma brucei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000048 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000048 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000048 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000048 "T. brucei lifecycle stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000048 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000048 "Trypanosoma brucei lifecycle stage") EquivalentClasses(obo:OPL_0000048 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5691))) SubClassOf(obo:OPL_0000048 obo:OPL_0000181) # Class: obo:OPL_0000049 (Trypanosoma cruzi epimastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000049 "A Trypanosoma cruzi that is found in the intestinal tract of the insect vector. In this form, the kinetoplast is found anterior and adjacent to the nucleus. The flagellum emerges in the middle of the cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000049 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000049 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000049 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000049 "T. cruzi epimastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000049 "http://dna.kdna.ucla.edu/parasite_course-old/cruzi_files/intro.htm") AnnotationAssertion(rdfs:label obo:OPL_0000049 "Trypanosoma cruzi epimastigote") SubClassOf(obo:OPL_0000049 obo:NCBITaxon_5693) SubClassOf(obo:OPL_0000049 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000223)) SubClassOf(obo:OPL_0000049 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000088)) # Class: obo:OPL_0000050 (Plasmodium falciparum microgametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000050 "A Plasmodium falciparum gametocyte that is a male gametocyte and found in either bloodstream of a human host or midgut of a mosquito vector. The microgametocyte is a precursor cell of the microgamete.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000050 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000050 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000050 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000050 "P. falciparum microgametocyte") AnnotationAssertion(rdfs:label obo:OPL_0000050 "Plasmodium falciparum microgametocyte") SubClassOf(obo:OPL_0000050 obo:OPL_0000249) SubClassOf(obo:OPL_0000050 obo:OPL_0000269) SubClassOf(obo:OPL_0000050 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000010)) SubClassOf(obo:OPL_0000050 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000050 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000051 (Schistosoma japonicum 7 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000051 "A Schistosoma japonicum worm is the mature form of Schistosoma japonicum and capable of sexual reproduction, which is found in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the human host 7 weeks after infection of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000051 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000051 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000051 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000051 "S. japonicum 7 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000051 "Schistosoma japonicum 7 week worm") SubClassOf(obo:OPL_0000051 obo:OPL_0000126) SubClassOf(obo:OPL_0000051 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000139)) SubClassOf(obo:OPL_0000051 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000047)) SubClassOf(obo:OPL_0000051 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000141)) # Class: obo:OPL_0000052 (Schistosoma japonicum egg) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000052 "A Schistosoma japonicum in an egg form that is laid by the female adult worm and released into the host gut where they leave the host in the faeces.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000052 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000052 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000052 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000052 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000052 "S. japonicum egg") AnnotationAssertion(rdfs:label obo:OPL_0000052 "Schistosoma japonicum egg") SubClassOf(obo:OPL_0000052 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000052 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000072)) # Class: obo:OPL_0000053 (Schistosoma japonicum 3 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000053 "A Schistosoma japonicum worm is capable of sexual reproduction, which is found in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammal host 3 weeks after infection of the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000053 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000053 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000053 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000053 "S. japonicum 3 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000053 "Schistosoma japonicum 3 week worm") SubClassOf(obo:OPL_0000053 obo:OPL_0000126) SubClassOf(obo:OPL_0000053 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000106)) SubClassOf(obo:OPL_0000053 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000047)) # Class: obo:OPL_0000056 (Trypanosoma brucei metacyclic trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000056 "A metacyclic trypomastigote stage in the lifecycle of Trypanosoma brucei that occurs either in vertebrate host bloodstream or in salivary glands of an insect vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000056 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000056 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000056 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000056 "T. brucei metacyclic trypomastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000056 "Trypanosoma brucei metacyclic trypomastigote stage") EquivalentClasses(obo:OPL_0000056 ObjectIntersectionOf(obo:OPL_0000149 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5691))) SubClassOf(obo:OPL_0000056 obo:OPL_0000149) SubClassOf(obo:OPL_0000056 obo:OPL_0000175) SubClassOf(obo:OPL_0000056 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000154)) SubClassOf(obo:OPL_0000056 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000320)) # Class: obo:OPL_0000057 (trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000057 "A parasite lifecycle stage of some protozoan parasites that is a non-reproductive, feeding and growing stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000057 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000057 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000057 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000057 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarT.htm") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000057 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000057 "trophozoite stage") SubClassOf(obo:OPL_0000057 obo:OPL_0000181) SubClassOf(obo:OPL_0000057 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000058 (Leishmania major procyclic promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000058 "A procyclic promastigote stage in the Leishmania major lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000058 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000058 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000058 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000058 "L. major procyclic promastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000058 "Leishmania major procyclic promastigote stage") EquivalentClasses(obo:OPL_0000058 ObjectIntersectionOf(obo:OPL_0000044 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5664))) SubClassOf(obo:OPL_0000058 obo:OPL_0000044) SubClassOf(obo:OPL_0000058 obo:OPL_0000189) SubClassOf(obo:OPL_0000058 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000194)) # Class: obo:OPL_0000059 (hepatic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000059 "A schizont stage that occurs in hepatocyte where sporozoites mature into a schizont.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000059 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000059 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000059 "Matt Berriman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000059 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000059 "PMID:11006474") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000059 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000059 "hepatic schizont stage") SubClassOf(obo:OPL_0000059 obo:OPL_0000084) # Class: obo:OPL_0000060 (Plasmodium falciparum schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000060 "A Plasmodium falciparum divides through schizogony. Depending on its location, it is either called hepatic or erythrocytic schizont. The schizont is a dividing stage with 2 or more nuclei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000060 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000060 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000060 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000060 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000060 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000060 "P. falciparum schizont") AnnotationAssertion(rdfs:label obo:OPL_0000060 "Plasmodium falciparum schizont") SubClassOf(obo:OPL_0000060 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000060 obo:OPL_0000275) SubClassOf(obo:OPL_0000060 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000158)) SubClassOf(obo:OPL_0000060 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) SubClassOf(obo:OPL_0000060 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000061 (Trypanosoma cruzi amastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000061 "A Trypanosoma cruzi that is the intracellular dividing form in the cytoplasm of mammalian cells. It is a round/oval-shaped cell with no protruding flagellum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000061 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000061 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000061 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000061 "T. cruzi amastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000061 "http://dna.kdna.ucla.edu/parasite_course-old/cruzi_files/intro.htm") AnnotationAssertion(rdfs:label obo:OPL_0000061 "Trypanosoma cruzi amastigote") SubClassOf(obo:OPL_0000061 obo:NCBITaxon_5693) SubClassOf(obo:OPL_0000061 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000064)) SubClassOf(obo:OPL_0000061 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000062 (Schistosoma haematobium 3 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000062 "A 3 days schistosomulum stage of Schistosoma haematobium occurs in the definitive host 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000062 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000062 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000062 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000062 "S. haematobium 3 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000062 "Schistosoma haematobium 3 day schistosomulum stage") EquivalentClasses(obo:OPL_0000062 ObjectIntersectionOf(obo:OPL_0000221 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000062 obo:OPL_0000197) SubClassOf(obo:OPL_0000062 obo:OPL_0000221) SubClassOf(obo:OPL_0000062 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000315)) # Class: obo:OPL_0000063 (Schistosoma mansoni 24 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000063 "A 24 hours schistosomulum stage of Schistosoma mansoni that occurs in the definitive host 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000063 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000063 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000063 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000063 "S. mansoni 24 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000063 "Schistosoma mansoni 24 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000063 ObjectIntersectionOf(obo:OPL_0000172 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000063 obo:OPL_0000100) SubClassOf(obo:OPL_0000063 obo:OPL_0000172) SubClassOf(obo:OPL_0000063 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000064 (Trypanosoma cruzi amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000064 "An amastigote stage in the lifecycle of Trypanosoma cruzi that occurs in mammalian hosts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000064 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000064 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000064 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000064 "T. cruzi amastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000064 "Trypanosoma cruzi amastigote stage") EquivalentClasses(obo:OPL_0000064 ObjectIntersectionOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5693))) SubClassOf(obo:OPL_0000064 obo:OPL_0000114) SubClassOf(obo:OPL_0000064 obo:OPL_0000185) SubClassOf(obo:OPL_0000064 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000066 (6 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000066 "A schistosomulum stage that occurs in 6 days after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000066 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000066 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000066 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000066 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000066 "6 day schistosomulum stage") SubClassOf(obo:OPL_0000066 obo:OPL_0000095) # Class: obo:OPL_0000067 (Schistosoma mansoni 3 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000067 "A Schistosoma mansoni schistosomulum in a migratory larval formi that is found within blood vessels of the definitive host, mammal, 3 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000067 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000067 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000067 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000067 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000067 "S. mansoni 3hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000067 "Schistosoma mansoni 3 hour schistosomulum") SubClassOf(obo:OPL_0000067 obo:OPL_0000038) SubClassOf(obo:OPL_0000067 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000120)) SubClassOf(obo:OPL_0000067 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000068 (Plasmodium falciparum macrogametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000068 "A macrogametocyte stage in the Plasmodium falciparum lifecycle that occurs either in the bloodstream of a human host or the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000068 "gametocytes are mainly found in the blood") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000068 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000068 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000068 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000068 "Priti Parikh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000068 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000068 "P. falciparum macrogametocyte stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000068 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000068 "Plasmodium falciparum macrogametocyte stage") EquivalentClasses(obo:OPL_0000068 ObjectIntersectionOf(obo:OPL_0000028 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000068 obo:OPL_0000192) SubClassOf(obo:OPL_0000068 obo:OPL_0000290) SubClassOf(obo:OPL_0000068 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000068 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000069 (Schistosoma haematobium miracidium stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000069 "A miracidium stage in the Schistosoma haematobium lifecycle that occurs in the intermediate snail host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000069 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000069 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000069 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000069 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000069 "S. haematobium miracidium stage") AnnotationAssertion(rdfs:label obo:OPL_0000069 "Schistosoma haematobium miracidium stage") EquivalentClasses(obo:OPL_0000069 ObjectIntersectionOf(obo:OPL_0000018 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000069 obo:OPL_0000018) SubClassOf(obo:OPL_0000069 obo:OPL_0000177) # Class: obo:OPL_0000070 (cercaria stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000070 "A parasite lifecycle stage that is a free-living larval stage of Digenea, developed within the germinal cells of the sporocyst or redia. A cercaria has a tapering head with large penetration glands. It may or may not have a long swimming \"tail\", depending on the species. The motile cercaria finds and settles in a host where it will become either an adult, or a mesocercaria, or a metacercaria, according to species.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000070 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000070 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000070 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000070 "Wikipedia: Trematode lifecycle stages") AnnotationAssertion(rdfs:label obo:OPL_0000070 "cercaria stage") SubClassOf(obo:OPL_0000070 obo:OPL_0000181) SubClassOf(obo:OPL_0000070 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000071 (Schistosoma japonicum worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000071 "A worm stage of Schistosoma japonicum that is fully developed mature form and found in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000071 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000071 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000071 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000071 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000071 "S. japonicum worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000071 "Schistosoma japonicum worm stage") EquivalentClasses(obo:OPL_0000071 ObjectIntersectionOf(obo:OPL_0000082 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000071 obo:OPL_0000082) SubClassOf(obo:OPL_0000071 obo:OPL_0000156) # Class: obo:OPL_0000072 (Schistosoma japonicum egg stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000072 "An egg stage in the lifecycle of Schistosoma japonicum that occurs in the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000072 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000072 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000072 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000072 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000072 "S. japonicum egg stage") AnnotationAssertion(rdfs:label obo:OPL_0000072 "Schistosoma japonicum egg stage") EquivalentClasses(obo:OPL_0000072 ObjectIntersectionOf(obo:OPL_0000180 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000072 obo:OPL_0000156) SubClassOf(obo:OPL_0000072 obo:OPL_0000180) # Class: obo:OPL_0000073 (oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000073 "A parasite lifecycle stage of sporozoa consisting of a zygote enclosed by cyst wall.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000073 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000073 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000073 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000073 "Mosby's Medical Dictionary, 8th edition. � 2009, Elsevier. (http://medical-dictionary.thefreedictionary.com/oocyst)") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000073 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000073 "oocyst stage") SubClassOf(obo:OPL_0000073 obo:OPL_0000181) SubClassOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000074 (Schistosoma haematobium 3 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000074 "A 3 hours schistosomulum stage of Schistosoma haematobium that occurs in the definitive host 3 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000074 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000074 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000074 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000074 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000074 "S. haematobium 3 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000074 "Schistosoma haematobium 3 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000074 ObjectIntersectionOf(obo:OPL_0000017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000074 obo:OPL_0000017) SubClassOf(obo:OPL_0000074 obo:OPL_0000197) SubClassOf(obo:OPL_0000074 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000075 (Plasmodium falciparum macrogamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000075 "A macrogamete stage in the Plasmodium falciparum lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000075 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000075 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000075 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000075 "P. falciparum macrogamete stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000075 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000075 "Plasmodium falciparum macrogamete stage") EquivalentClasses(obo:OPL_0000075 ObjectIntersectionOf(obo:OPL_0000085 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000075 obo:OPL_0000262) SubClassOf(obo:OPL_0000075 obo:OPL_0000287) SubClassOf(obo:OPL_0000075 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000076 (procyclic trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000076 "A trypomastigote stage where trypomastigote form of parasites are in dividing form. This stage occurs in fly vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000076 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000076 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000076 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000076 "procyclic trypomastigote stage") SubClassOf(obo:OPL_0000076 obo:OPL_0000033) SubClassOf(obo:OPL_0000076 obo:OPL_0000323) SubClassOf(obo:OPL_0000076 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0051301)) SubClassOf(obo:OPL_0000076 ObjectSomeValuesFrom(obo:BFO_0000066 ObjectUnionOf(obo:OPL_0000194 obo:OPL_0000215))) # Class: obo:OPL_0000077 (Schistosoma japonicum schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000077 "A Schistosoma japonicum in a migratory larval form that is found within blood vessels of the definitive host and develops into the worm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000077 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000077 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000077 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000077 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000077 "S. japonicum schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000077 "Schistosoma japonicum schistosomulum") SubClassOf(obo:OPL_0000077 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000077 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000118)) # Class: obo:OPL_0000078 (erythrocytic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000078 "A schizont stage that occurs in erythrocytes where trophozoites mature into a schizont and schizont produces daughter trophozoites or merozoites.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000078 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000078 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000078 "Matt Berriman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000078 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000078 "PMID: 11006474") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000078 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000078 "erythrocytic schizont stage") SubClassOf(obo:OPL_0000078 obo:OPL_0000084) # Class: obo:OPL_0000079 (Schistosoma haematobium cercaria) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000079 "A Schistosoma haematobium is the parasitic larval form of the Schistosoma haematobium that develops in a freshwater snail and is released into the water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000079 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000079 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000079 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000079 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000079 "S. haematobium cercaria") AnnotationAssertion(rdfs:label obo:OPL_0000079 "Schistosoma haematobium cercaria") SubClassOf(obo:OPL_0000079 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000079 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000101)) # Class: obo:OPL_0000080 (parasite lifecycle in host liver stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000080 "A parasite lifecycle stage that occurs in the liver of the host organism. For Plasmodium species these stages can include sporozoites, trophozoites, schizonts, and merozoites.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000080 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000080 "liver stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000080 "EuPathDB") AnnotationAssertion(rdfs:label obo:OPL_0000080 "parasite lifecycle in host liver stage") SubClassOf(obo:OPL_0000080 obo:OPL_0000181) SubClassOf(obo:OPL_0000080 ObjectSomeValuesFrom(obo:BFO_0000066 obo:UBERON_0002107)) SubClassOf(obo:OPL_0000080 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000081 (Trypanosoma brucei procyclic trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000081 "A procyclic promastigote stage in the Trypanosoma brucei lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000081 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000081 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000081 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000081 "Trypanosoma brucei procyclic trypomastigote stage") EquivalentClasses(obo:OPL_0000081 ObjectIntersectionOf(obo:OPL_0000044 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5691))) SubClassOf(obo:OPL_0000081 obo:OPL_0000044) SubClassOf(obo:OPL_0000081 obo:OPL_0000048) SubClassOf(obo:OPL_0000081 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000215)) # Class: obo:OPL_0000082 (parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000082 "A parasite lifecycle stage of some parasites in which the parasite develops into a worm form, and undergoes maturation.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000082 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000082 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000082 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000082 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000082 "parasitic worm stage") SubClassOf(obo:OPL_0000082 obo:OPL_0000181) SubClassOf(obo:OPL_0000082 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000083 (Bulinus hepatopancreas) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000083 "Hepatopancreas that is a part of or originated from a Bulinus snail.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000083 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000083 "Bulinus hepatopancreas") EquivalentClasses(obo:OPL_0000083 ObjectIntersectionOf(obo:BTO_0000597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_157969))) SubClassOf(obo:OPL_0000083 obo:BTO_0000597) # Class: obo:OPL_0000084 (schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000084 "A parasite lifecycle stage that is the multinucleate stage in the development of some members of the Sarcodina and some sporozoans during schizogony.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000084 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000084 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000084 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000084 "http://medical-dictionary.thefreedictionary.com/schizont") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000084 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000084 "schizont stage") SubClassOf(obo:OPL_0000084 obo:OPL_0000181) SubClassOf(obo:OPL_0000084 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000085 (macrogamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000085 "A gamete stage in parasites when macrogametocytes produce macrogametes through the process known as gametogenesis.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000085 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000085 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000085 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000085 "http://www.tulane.edu/~wiser/malaria/mal_lc.PDF") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000085 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000085 "macrogamete stage") SubClassOf(obo:OPL_0000085 obo:OPL_0000181) SubClassOf(obo:OPL_0000085 obo:OPL_0000260) SubClassOf(obo:OPL_0000085 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000086 (daughter sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000086 "A sporocyst stage of Trematodes produced by a mother sporocyst; it lacks a gut and is capable of asexual production of either rediae or cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000086 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000086 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000086 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000086 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarD.htm") AnnotationAssertion(rdfs:label obo:OPL_0000086 "daughter sporocyst stage") SubClassOf(obo:OPL_0000086 obo:OPL_0000098) # Class: obo:OPL_0000087 (Schistosoma haematobium 7 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000087 "A Schistosoma haematobium worm is the mature form of Schistosoma haematobium and capable of sexual reproduction, which is found in the pelvic blood vessels of the vesicle plexis of the mammal host 7 weeks after infection of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000087 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000087 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000087 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000087 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000087 "S. haematobium 7 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000087 "Schistosoma haematobium 7 week worm") SubClassOf(obo:OPL_0000087 obo:OPL_0000037) SubClassOf(obo:OPL_0000087 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000111)) SubClassOf(obo:OPL_0000087 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000097)) # Class: obo:OPL_0000088 (Triatominae midgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000088 "A midgut that is a part of or originated from a Triatominae bug.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000088 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000088 "Triatominae midgut") EquivalentClasses(obo:OPL_0000088 ObjectIntersectionOf(obo:UBERON_0001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_70999))) SubClassOf(obo:OPL_0000088 obo:UBERON_0001045) # Class: obo:OPL_0000089 (Plasmodium falciparum ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000089 "A Plasmodium falciparum that is a 'banana-shaped' form and originates from the round zygote. The ookinete is found in the midgut of a mosquito vector and traverses the midgut wall of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000089 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000089 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000089 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000089 "P. falciparum ookinete") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000089 "Wikipedia: Plasmodium falciparum biology") AnnotationAssertion(rdfs:label obo:OPL_0000089 "Plasmodium falciparum ookinete") SubClassOf(obo:OPL_0000089 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000089 obo:OPL_0000274) SubClassOf(obo:OPL_0000089 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000187)) SubClassOf(obo:OPL_0000089 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000090 (Schistosoma mansoni 3 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000090 "A Schistosoma mansoni worm that is capable of sexual reproduction, which is found in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host 3 weeks after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000090 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000090 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000090 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000090 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000090 "S. mansoni 3 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000090 "Schistosoma mansoni 3 week worm") SubClassOf(obo:OPL_0000090 obo:OPL_0000128) SubClassOf(obo:OPL_0000090 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000107)) SubClassOf(obo:OPL_0000090 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000317)) # Class: obo:OPL_0000091 (Schistosoma haematobium worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000091 "A worm stage of Schistosoma haematobium that is fully developed mature form and found in the pelvic blood vessels of the vesicle plexis of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000091 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000091 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000091 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000091 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000091 "S. haematobium worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000091 "Schistosoma haematobium worm stage") EquivalentClasses(obo:OPL_0000091 ObjectIntersectionOf(obo:OPL_0000082 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000091 obo:OPL_0000082) SubClassOf(obo:OPL_0000091 obo:OPL_0000177) # Class: obo:OPL_0000092 (Trypanosoma brucei epimastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000092 "A Trypanosoma brucei that is found in the salivary glands of tse-tse fly. In this form the kinetoplast is anterior to the nucleus with a short undulating membrane running about half the length of the body.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000092 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000092 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000092 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000092 "T. brucei epimastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000092 "http://dna.kdna.ucla.edu/parasite_course-old/african%20tryps%20new_files/contents1.htm") AnnotationAssertion(rdfs:label obo:OPL_0000092 "Trypanosoma brucei epimastigote") SubClassOf(obo:OPL_0000092 obo:NCBITaxon_5691) SubClassOf(obo:OPL_0000092 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000216)) SubClassOf(obo:OPL_0000092 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000154)) # Class: obo:OPL_0000093 (Plasmodium falciparum hepatic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000093 "A hepatic schizont stage in the lifecycle of Plasmodium falciparum that occurs in the infected hepatocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000093 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000093 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000093 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000093 "P. falciparum hepatic schizont stage") AnnotationAssertion(rdfs:label obo:OPL_0000093 "Plasmodium falciparum hepatic schizont stage") EquivalentClasses(obo:OPL_0000093 ObjectIntersectionOf(obo:OPL_0000059 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000093 obo:OPL_0000158) SubClassOf(obo:OPL_0000093 obo:OPL_0000299) SubClassOf(obo:OPL_0000093 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) # Class: obo:OPL_0000094 (Schistosoma japonicum sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000094 "A Schistosoma japonicum is an elongated sac that develops from the miracidium within the snail indermediate host, and that either produces more sporocysts or develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000094 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000094 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000094 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000094 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000094 "S. japonicum sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000094 "Schistosoma japonicum sporocyst") SubClassOf(obo:OPL_0000094 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000094 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000186)) # Class: obo:OPL_0000095 (schistomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000095 "A parasite lifecycle stage that is the migratory stage between cercaria and adult of the schistosomes; equivalent to the metacercarial stage in other digeneans.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000095 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000095 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000095 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000095 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarS.htm") AnnotationAssertion(rdfs:label obo:OPL_0000095 "schistomulum stage") SubClassOf(obo:OPL_0000095 obo:OPL_0000181) SubClassOf(obo:OPL_0000095 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000096 (Homo sapiens erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000096 "An erythrocyte that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000096 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000096 "human RBC") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000096 "human erythrocyte") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000096 "human red blood cell") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000096 "FMA:62845") AnnotationAssertion(rdfs:label obo:OPL_0000096 "Homo sapiens erythrocyte") EquivalentClasses(obo:OPL_0000096 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000096 obo:OPL_0000311) # Class: obo:OPL_0000097 (Homo sapiens vesical venus plexus) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000097 "Vesical venus plexus that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000097 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000097 "human vesical venus plexus") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000097 "FMA:18934") AnnotationAssertion(rdfs:label obo:OPL_0000097 "Homo sapiens vesical venus plexus") EquivalentClasses(obo:OPL_0000097 ObjectIntersectionOf(obo:OPL_0000213 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000097 obo:OPL_0000213) # Class: obo:OPL_0000098 (sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000098 "A parasite lifecycle stage that is the early developmental stage capable of asexual reproduction: in sporozoans it is usually enclosed within an oocyst; in digeneans it is an intramolluscan stage lacking a gut.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000098 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000098 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000098 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000098 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarD.htm") AnnotationAssertion(rdfs:label obo:OPL_0000098 "sporocyst stage") SubClassOf(obo:OPL_0000098 obo:OPL_0000181) SubClassOf(obo:OPL_0000098 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000099 (Schistosoma haematobium 3 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000099 "A Schistosoma haematobium worm is the mature form of Schistosoma haematobium and capable of sexual reproduction, which is found in the pelvic blood vessels of the vesicle plexis of the human host 3 weeks after infection of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000099 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000099 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000099 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000099 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000099 "S. haematobium 3 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000099 "Schistosoma haematobium 3 week worm") SubClassOf(obo:OPL_0000099 obo:OPL_0000037) SubClassOf(obo:OPL_0000099 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000202)) SubClassOf(obo:OPL_0000099 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000219)) # Class: obo:OPL_0000100 (Schistosoma mansoni schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000100 "A schistosomulum stage of Schistosoma mansoni that occurs in the definitive host and is followed by the parasitic worm stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000100 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000100 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000100 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000100 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000100 "S. mansoni schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000100 "Schistosoma mansoni schistosomulum stage") EquivalentClasses(obo:OPL_0000100 ObjectIntersectionOf(obo:OPL_0000095 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000100 obo:OPL_0000095) SubClassOf(obo:OPL_0000100 obo:OPL_0000203) # Class: obo:OPL_0000101 (Schistosoma haematobium cercaria stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000101 "A cercaria stage in the lifecycle of Schistosoma haematobium that occurs in a freshwater snail and in fresh water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000101 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000101 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000101 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000101 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000101 "S. haematobium cercaria stage") AnnotationAssertion(rdfs:label obo:OPL_0000101 "Schistosoma haematobium cercaria stage") EquivalentClasses(obo:OPL_0000101 ObjectIntersectionOf(obo:OPL_0000070 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000101 obo:OPL_0000070) SubClassOf(obo:OPL_0000101 obo:OPL_0000177) # Class: obo:OPL_0000102 (Leishmania major metacyclic promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000102 "A metacyclic promastigote stage in the lifecycle of Leishmania major.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000102 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000102 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000102 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000102 "L. major metacyclic promastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000102 "Leishmania major metacyclic promastigote stage") EquivalentClasses(obo:OPL_0000102 ObjectIntersectionOf(obo:OPL_0000006 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5664))) SubClassOf(obo:OPL_0000102 obo:OPL_0000006) SubClassOf(obo:OPL_0000102 obo:OPL_0000189) SubClassOf(obo:OPL_0000102 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000015)) SubClassOf(obo:OPL_0000102 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000103 (Plasmodium falciparum merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000103 "A merozoite stage in the Plasmodium falciparum lifecycle that occurs in the bloodstream or hepatocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000103 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000103 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000103 "P. falciparum merozoite stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000103 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000103 "Plasmodium falciparum merozoite stage") EquivalentClasses(obo:OPL_0000103 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000103 obo:OPL_0000165) SubClassOf(obo:OPL_0000103 obo:OPL_0000292) SubClassOf(obo:OPL_0000103 obo:PIDO_0000009) SubClassOf(obo:OPL_0000103 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000104 (Biomphalaria hepatopancreas) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000104 "Hepatopancreas that is a part of or originated from a Biomphalaria snail.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000104 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000104 "Biomphalaria hepatopancreas") EquivalentClasses(obo:OPL_0000104 ObjectIntersectionOf(obo:BTO_0000597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_6525))) SubClassOf(obo:OPL_0000104 obo:BTO_0000597) # Class: obo:OPL_0000105 (Schistosoma mansoni egg) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000105 "A Schistosoma mansoni in an egg form that is laid by the female adult worm and released into the host gut where they leave the host in the faeces.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000105 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000105 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000105 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000105 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000105 "S. mansoni egg") AnnotationAssertion(rdfs:label obo:OPL_0000105 "Schistosoma mansoni egg") SubClassOf(obo:OPL_0000105 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000105 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000135)) # Class: obo:OPL_0000106 (Schistosoma japonicum 3 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000106 "A worm stage of Schistosoma japonicum that is found in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the definitive host 3 weeks after infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000106 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000106 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000106 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000106 "S. japonicum 3 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000106 "Schistosoma japonicum 3 week worm stage") EquivalentClasses(obo:OPL_0000106 ObjectIntersectionOf(obo:OPL_0000183 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000106 obo:OPL_0000071) SubClassOf(obo:OPL_0000106 obo:OPL_0000183) SubClassOf(obo:OPL_0000106 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000047)) # Class: obo:OPL_0000107 (Schistosoma mansoni 3 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000107 "A worm stage of Schistosoma mansoni that is found in the small inferior mesenteric blood vessels surrounding the large intestine of the definitive host 3 weeks after infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000107 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000107 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000107 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000107 "S. mansoni 3 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000107 "Schistosoma mansoni 3 week worm stage") EquivalentClasses(obo:OPL_0000107 ObjectIntersectionOf(obo:OPL_0000183 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000107 obo:OPL_0000183) SubClassOf(obo:OPL_0000107 obo:OPL_0000211) SubClassOf(obo:OPL_0000107 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000317)) # Class: obo:OPL_0000108 (epimastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000108 "A parasite lifecycle stage of Trypanosomatids. During this stage, the undulating membrane is shortened and the flagellar pocket and the kinetoplast are anterior to the nucleus. This stage occurs in the insect host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000108 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000108 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000108 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000108 "epimastigote stage") SubClassOf(obo:OPL_0000108 obo:OPL_0000181) SubClassOf(obo:OPL_0000108 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000109 (Schistosoma haematobium daughter sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000109 "A Schistosoma haematobium sporocyst that develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000109 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000109 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000109 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000109 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000109 "S. haematobium daughter sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000109 "Schistosoma haematobium daughter sporocyst") SubClassOf(obo:OPL_0000109 obo:OPL_0000166) SubClassOf(obo:OPL_0000109 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000163)) SubClassOf(obo:OPL_0000109 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000083)) # Class: obo:OPL_0000110 (Plasmodium falciparum erythrocytic schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000110 "A Plasmodium falciparum schizont that is found in infected erythrocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000110 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000110 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000110 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000110 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000110 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000110 "P. falciparum erythrocytic schizont") AnnotationAssertion(rdfs:label obo:OPL_0000110 "Plasmodium falciparum erythrocytic schizont") SubClassOf(obo:OPL_0000110 obo:OPL_0000060) SubClassOf(obo:OPL_0000110 obo:OPL_0000276) SubClassOf(obo:OPL_0000110 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000035)) SubClassOf(obo:OPL_0000110 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000111 (Schistosoma haematobium 7 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000111 "A 7 week worm stage of Schistosoma haematobium that is the mature stage of Schistosoma haematobium and found in the pelvic blood vessels of the vesicle plexis of the definitive host 7 weeks after weeks after infection .") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000111 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000111 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000111 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000111 "S. haematobium 7 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000111 "Schistosoma haematobium 7 week worm stage") EquivalentClasses(obo:OPL_0000111 ObjectIntersectionOf(obo:OPL_0000148 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000111 obo:OPL_0000091) SubClassOf(obo:OPL_0000111 obo:OPL_0000148) SubClassOf(obo:OPL_0000111 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000097)) # Class: obo:OPL_0000112 (Schistosoma mansoni miracidium stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000112 "A miracidium stage in the Schistosoma mansoni lifecycle that occurs in the intermediate snail host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000112 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000112 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000112 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000112 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000112 "S. mansoni miracidium stage") AnnotationAssertion(rdfs:label obo:OPL_0000112 "Schistosoma mansoni miracidium stage") EquivalentClasses(obo:OPL_0000112 ObjectIntersectionOf(obo:OPL_0000018 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000112 obo:OPL_0000018) SubClassOf(obo:OPL_0000112 obo:OPL_0000203) # Class: obo:OPL_0000113 (Plasmodium falciparum oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000113 "An oocyst stage in the Plasmodium falciparum lifecycle that occurs on the hemocoel side of the midgut of a mosquito vector. During this stage Plasmodium falciparum ookinete invades and escapes midgut wall of mosquito and embed itself onto the exterior of the gut membrane and develop encysted zygote, called oocyst.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000113 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000113 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000113 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000113 "P. falciparum oocyst stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000113 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000113 "Plasmodium falciparum oocyst stage") EquivalentClasses(obo:OPL_0000113 ObjectIntersectionOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000113 obo:OPL_0000165) SubClassOf(obo:OPL_0000113 obo:OPL_0000295) SubClassOf(obo:OPL_0000113 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000114 (amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000114 "A parasite lifecycle stage is a nonflagellate intracellular developmental stage in the trypanosomatid parasites lifecycle that occurs in mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000114 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000114 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000114 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000114 "amastigote stage") SubClassOf(obo:OPL_0000114 obo:OPL_0000181) SubClassOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000115 (Plasmodium falciparum sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000115 "A sporozoite stage in the Plasmodium falciparum lifecycle that occurs in the salivary glands of the mosquito and invades hepatocytes in the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "Matt Berrimen") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "Priti Parikh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000115 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000115 "P. falciparum sporozoite stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000115 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000115 "Plasmodium falciparum sporozoite stage") EquivalentClasses(obo:OPL_0000115 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000115 obo:OPL_0000165) SubClassOf(obo:OPL_0000115 obo:OPL_0000300) SubClassOf(obo:OPL_0000115 obo:PIDO_0000008) SubClassOf(obo:OPL_0000115 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) SubClassOf(obo:OPL_0000115 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000117)) SubClassOf(obo:OPL_0000115 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000121)) # Class: obo:OPL_0000116 (Trypanosoma cruzi metacyclic trypomastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000116 "A Trypanosoma cruzi trypomastigote that is found in blood or cells of mammal hosts at the infectious stage for mammals.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000116 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000116 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000116 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000116 "T. cruzi metacyclic trypomastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000116 "http://dna.kdna.ucla.edu/parasite_course-old/cruzi_files/intro.htm") AnnotationAssertion(rdfs:label obo:OPL_0000116 "Trypanosoma cruzi metacyclic trypomastigote") SubClassOf(obo:OPL_0000116 obo:OPL_0000164) SubClassOf(obo:OPL_0000116 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000131)) SubClassOf(obo:OPL_0000116 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000320)) SubClassOf(obo:OPL_0000116 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000117 (Homo sapiens blood) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000117 "Blood that is part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000117 "previous def was: blood of human") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000117 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000117 "human blood") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000117 "OPL") AnnotationAssertion(rdfs:label obo:OPL_0000117 "Homo sapiens blood") EquivalentClasses(obo:OPL_0000117 ObjectIntersectionOf(obo:UBERON_0000178 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000117 obo:OPL_0000320) # Class: obo:OPL_0000118 (Schistosoma japonicum schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000118 "A schistosomulum stage of Schistosoma japonicum that occurs in the definitive host and is followed by the parasitic worm stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000118 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000118 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000118 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000118 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000118 "S. japonicum schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000118 "Schistosoma japonicum schistosomulum stage") EquivalentClasses(obo:OPL_0000118 ObjectIntersectionOf(obo:OPL_0000095 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000118 obo:OPL_0000095) SubClassOf(obo:OPL_0000118 obo:OPL_0000156) # Class: obo:OPL_0000119 (exflagellated microgametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000119 "A microgametocyte stage in some apicomplexan parasites where microgametocyte gets matured and form microgamete through the process known as exflagellation.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000119 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000119 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000119 "Priti Parikh") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000119 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000119 "exflagellated microgametocyte stage") SubClassOf(obo:OPL_0000119 obo:OPL_0000143) # Class: obo:OPL_0000120 (Schistosoma mansoni 3 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000120 "A 3 hours schistosomulum stage of Schistosoma mansoni that occurs in the definitive host 3 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000120 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000120 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000120 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000120 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000120 "S. mansoni 3 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000120 "Schistosoma mansoni 3 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000120 ObjectIntersectionOf(obo:OPL_0000017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000120 obo:OPL_0000017) SubClassOf(obo:OPL_0000120 obo:OPL_0000100) SubClassOf(obo:OPL_0000120 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000121 (Anopheles salivary gland) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000121 "A salivary gland that is a part of or originated from an Anopheles mosquito.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000121 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000121 "Anopheles salivary gland") EquivalentClasses(obo:OPL_0000121 ObjectIntersectionOf(obo:UBERON_0001044 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7164))) SubClassOf(obo:OPL_0000121 obo:UBERON_0001044) # Class: obo:OPL_0000122 (Homo sapiens macrophage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000122 "A macrophage that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000122 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000122 "human macrophage") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000122 "FMA:63261") AnnotationAssertion(rdfs:label obo:OPL_0000122 "Homo sapiens macrophage") EquivalentClasses(obo:OPL_0000122 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000122 obo:OPL_0000321) # Class: obo:OPL_0000123 (Schistosoma mansoni 3 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000123 "A Schistosoma mansoni schistosomulum in a migratory larval formi that is found within blood vessels of the definitive host, mammal, 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000123 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000123 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000123 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000123 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000123 "S. mansoni 3day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000123 "Schistosoma mansoni 3 day schistosomulum") SubClassOf(obo:OPL_0000123 obo:OPL_0000038) SubClassOf(obo:OPL_0000123 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000014)) SubClassOf(obo:OPL_0000123 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000316)) # Class: obo:OPL_0000124 (Schistosoma haematobium 6 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000124 "A 6 day schistosomulum stage of Schistosoma haematobium that occurs in the definitive host 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000124 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000124 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000124 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000124 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000124 "S. haematobium 6 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000124 "Schistosoma haematobium 6 day schistosomulum stage") EquivalentClasses(obo:OPL_0000124 ObjectIntersectionOf(obo:OPL_0000066 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000124 obo:OPL_0000066) SubClassOf(obo:OPL_0000124 obo:OPL_0000197) SubClassOf(obo:OPL_0000124 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000315)) # Class: obo:OPL_0000125 (Schistosoma haematobium egg stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000125 "An egg stage in the lifecycle of Schistosoma haematobium that occurs in the mammalian host..") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000125 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000125 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000125 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000125 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000125 "S. haematobium egg stage") AnnotationAssertion(rdfs:label obo:OPL_0000125 "Schistosoma haematobium egg stage") EquivalentClasses(obo:OPL_0000125 ObjectIntersectionOf(obo:OPL_0000180 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000125 obo:OPL_0000177) SubClassOf(obo:OPL_0000125 obo:OPL_0000180) # Class: obo:OPL_0000126 (Schistosoma japonicum worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000126 "A Schistosoma japonicum is the mature form of Schistosoma japonicum and capable of sexual reproduction, which lives in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000126 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000126 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000126 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000126 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000126 "S. japonicum worm") AnnotationAssertion(rdfs:label obo:OPL_0000126 "Schistosoma japonicum worm") SubClassOf(obo:OPL_0000126 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000126 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000071)) # Class: obo:OPL_0000127 (adult female parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000127 "An adult worm stage of a female parasitic worm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000127 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000127 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000127 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000127 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000127 "adult female parasitic worm stage") SubClassOf(obo:OPL_0000127 obo:OPL_0000237) # Class: obo:OPL_0000128 (Schistosoma mansoni worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000128 "A Schistosoma mansoni in the mature form that is capable of sexual reproduction, which lives in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000128 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000128 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000128 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000128 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000128 "S. mansoni worm") AnnotationAssertion(rdfs:label obo:OPL_0000128 "Schistosoma mansoni worm") SubClassOf(obo:OPL_0000128 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000128 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000211)) # Class: obo:OPL_0000129 (Schistosoma haematobium 24 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000129 "A 24 hours schistosomulum stage of Schistosoma haematobium that occurs in the definitive host 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000129 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000129 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000129 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000129 "S. haematobium 24 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000129 "Schistosoma haematobium 24 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000129 ObjectIntersectionOf(obo:OPL_0000172 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000129 obo:OPL_0000172) SubClassOf(obo:OPL_0000129 obo:OPL_0000197) SubClassOf(obo:OPL_0000129 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000130 (Plasmodium falciparum merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000130 "A Plasmodium falciparum that is produced in a schizont, found in the bloodstream of a human host and invades erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000130 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000130 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000130 "Priti Parkh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000130 "P. falciparum merozoite") AnnotationAssertion(rdfs:label obo:OPL_0000130 "Plasmodium falciparum merozoite") SubClassOf(obo:OPL_0000130 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000130 obo:OPL_0000270) SubClassOf(obo:OPL_0000130 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000103)) SubClassOf(obo:OPL_0000130 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) SubClassOf(obo:OPL_0000130 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000131 (Trypanosoma cruzi metacyclic trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000131 "A metacyclic trypomastigote stage in the lifecycle of Trypanosoma cruzi that occurs in a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000131 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000131 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000131 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000131 "T. cruzi metacyclic trypomastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000131 "Trypanosoma cruzi metacyclic trypomastigote stage") EquivalentClasses(obo:OPL_0000131 ObjectIntersectionOf(obo:OPL_0000149 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5693))) SubClassOf(obo:OPL_0000131 obo:OPL_0000149) SubClassOf(obo:OPL_0000131 obo:OPL_0000169) SubClassOf(obo:OPL_0000131 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000320)) SubClassOf(obo:OPL_0000131 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000132 (Schistosoma japonicum 24 hour schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000132 "A Schistosoma japonicum schistosomulum in a migratory larval form that is found within blood vessels of the mammal, as definitive host, 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000132 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000132 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000132 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000132 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000132 "S. japonicum 24 hour schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000132 "Schistosoma japonicum 24 hour schistosomulum") SubClassOf(obo:OPL_0000132 obo:OPL_0000077) SubClassOf(obo:OPL_0000132 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000195)) SubClassOf(obo:OPL_0000132 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000314)) # Class: obo:OPL_0000133 (Homo sapiens lung) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000133 "A lung that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000133 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000133 "human lung") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000133 "FMA:7195") AnnotationAssertion(rdfs:label obo:OPL_0000133 "Homo sapiens lung") EquivalentClasses(obo:OPL_0000133 ObjectIntersectionOf(obo:UBERON_0002048 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000133 obo:OPL_0000316) # Class: obo:OPL_0000134 (Oncomelania hepatopancreas) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000134 "Hepatopancreas that is a part of or originated from a Oncomelania snail.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000134 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000134 "Oncomelania hepatopancreas") EquivalentClasses(obo:OPL_0000134 ObjectIntersectionOf(obo:BTO_0000597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_56140))) SubClassOf(obo:OPL_0000134 obo:BTO_0000597) # Class: obo:OPL_0000135 (Schistosoma mansoni egg stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000135 "An egg stage in the lifecycle of Schistosoma mansoni that occurs in the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000135 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000135 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000135 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000135 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000135 "S. mansoni egg stage") AnnotationAssertion(rdfs:label obo:OPL_0000135 "Schistosoma mansoni egg stage") EquivalentClasses(obo:OPL_0000135 ObjectIntersectionOf(obo:OPL_0000180 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000135 obo:OPL_0000180) SubClassOf(obo:OPL_0000135 obo:OPL_0000203) # Class: obo:OPL_0000136 (Schistosoma mansoni 7 week worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000136 "A Schistosoma mansoni worm is the mature form of Schistosoma mansoni and capable of sexual reproduction, which is found in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host 7 weeks after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000136 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000136 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000136 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000136 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000136 "S. mansoni 7 week worm") AnnotationAssertion(rdfs:label obo:OPL_0000136 "Schistosoma mansoni 7 week worm") SubClassOf(obo:OPL_0000136 obo:OPL_0000128) SubClassOf(obo:OPL_0000136 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000217)) SubClassOf(obo:OPL_0000136 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000317)) SubClassOf(obo:OPL_0000136 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000318)) # Class: obo:OPL_0000137 (Plasmodium falciparum sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000137 "A Plasmodium falciparum is formed in the oocyst. It migrates to and resides in the salivary glands of the mosquito vector. A distinction is made between oocyst-derived and salivary gland-derived sporozoites. Sporozoites invade hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000137 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000137 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000137 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000137 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000137 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000137 "P. falciparum sporozoite") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000137 "Wikipedia: Plasmodium falciparum biology") AnnotationAssertion(rdfs:label obo:OPL_0000137 "Plasmodium falciparum sporozoite") SubClassOf(obo:OPL_0000137 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000137 obo:OPL_0000278) SubClassOf(obo:OPL_0000137 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000115)) SubClassOf(obo:OPL_0000137 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) SubClassOf(obo:OPL_0000137 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000117)) SubClassOf(obo:OPL_0000137 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000121)) # Class: obo:OPL_0000138 (Plasmodium falciparum oocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000138 "A Plasmodium falciparum that oocyst is formed, after traversal of the midgut wall by the ookinete stage, on the hemocoel side of the midgut wall of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000138 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000138 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000138 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000138 "P. falciparum oocyst") AnnotationAssertion(rdfs:label obo:OPL_0000138 "Plasmodium falciparum oocyst") SubClassOf(obo:OPL_0000138 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000138 obo:OPL_0000273) SubClassOf(obo:OPL_0000138 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000113)) SubClassOf(obo:OPL_0000138 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000139 (Schistosoma japonicum 7 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000139 "A 7 week worm stage of Schistosoma japonicum that is the mature stage of Schistosoma japonicum and found in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the definitive host 7 weeks after weeks after infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000139 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000139 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000139 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000139 "S. japonicum 7 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000139 "Schistosoma japonicum 7 week worm stage") EquivalentClasses(obo:OPL_0000139 ObjectIntersectionOf(obo:OPL_0000148 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000139 obo:OPL_0000071) SubClassOf(obo:OPL_0000139 obo:OPL_0000148) SubClassOf(obo:OPL_0000139 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000047)) SubClassOf(obo:OPL_0000139 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000141)) # Class: obo:OPL_0000140 (erythrocytic ring trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000140 "An early trophozoite stage of Plasmodium sp. where a large central vacuole and peripheral nucleus give an appearance of a signet ring.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000140 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000140 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000140 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000140 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarR.htm") AnnotationAssertion(rdfs:label obo:OPL_0000140 "erythrocytic ring trophozoite stage") SubClassOf(obo:OPL_0000140 obo:OPL_0000243) # Class: obo:OPL_0000141 (Homo sapiens intestine) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000141 "An intestine that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000141 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000141 "human intestine") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000141 "FMA:7199") AnnotationAssertion(rdfs:label obo:OPL_0000141 "Homo sapiens intestine") EquivalentClasses(obo:OPL_0000141 ObjectIntersectionOf(obo:UBERON_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000141 obo:OPL_0000318) # Class: obo:OPL_0000142 (Schistosoma mansoni mother sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000142 "A mother sporocyst stage in the Schistosoma mansoni lifecycle that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000142 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000142 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000142 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000142 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000142 "S. mansoni mother sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000142 "Schistosoma mansoni mother sporocyst stage") EquivalentClasses(obo:OPL_0000142 ObjectIntersectionOf(obo:OPL_0000214 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000142 obo:OPL_0000041) SubClassOf(obo:OPL_0000142 obo:OPL_0000214) # Class: obo:OPL_0000143 (microgametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000143 "A gametocyte stage where a cell differentiates into a male sexual form called microgametocyte.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000143 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000143 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000143 "Priti Parikh") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000143 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000143 "microgametocyte stage") SubClassOf(obo:OPL_0000143 obo:OPL_0000150) # Class: obo:OPL_0000144 (Schistosoma haematobium mother sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000144 "A Schistosoma haematobium sporocyst that produces more sporocysts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000144 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000144 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000144 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000144 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000144 "S. haematobium mother sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000144 "Schistosoma haematobium mother sporocyst") SubClassOf(obo:OPL_0000144 obo:OPL_0000166) SubClassOf(obo:OPL_0000144 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000212)) # Class: obo:OPL_0000145 (Schistosoma japonicum mother sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000145 "A Schistosoma japonicum sporocyst that produces more sporocysts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000145 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000145 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000145 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000145 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000145 "S. japonicum mother sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000145 "Schistosoma japonicum mother sporocyst") SubClassOf(obo:OPL_0000145 obo:OPL_0000094) SubClassOf(obo:OPL_0000145 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000184)) # Class: obo:OPL_0000146 (Plasmodium falciparum trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000146 "A Plasmodium falciparum is a feeding form. The trophozoite stage has only 1 nucleus. Depending on its location, it is either called hepatic or erythrocytic trophozoite.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000146 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000146 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000146 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000146 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000146 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000146 "P. falciparum trophozoite") AnnotationAssertion(rdfs:label obo:OPL_0000146 "Plasmodium falciparum trophozoite") SubClassOf(obo:OPL_0000146 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000146 obo:OPL_0000281) SubClassOf(obo:OPL_0000146 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000251)) SubClassOf(obo:OPL_0000146 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) SubClassOf(obo:OPL_0000146 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000147 (Schistosoma mansoni sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000147 "A Schistosoma mansoni is an elongated sac that develops from the miracidium within the snail indermediate host, and that either produces more sporocysts or develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000147 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000147 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000147 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000147 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000147 "S. mansoni sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000147 "Schistosoma mansoni sporocyst") SubClassOf(obo:OPL_0000147 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000147 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000041)) # Class: obo:OPL_0000148 (7 week parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000148 "A parasitic worm stage of development 7 weeks post differentiation into a worm form.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000148 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000148 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000148 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000148 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000148 "7 week parasitic worm stage") SubClassOf(obo:OPL_0000148 obo:OPL_0000082) # Class: obo:OPL_0000149 (metacyclic trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000149 "A trypomastigote stage of Trypanosoma species which are nondividing forms resistant to mammalian complement that have the capacity to infect mammalian cells.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000149 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000149 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000149 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000149 "metacyclic trypomastigote stage") SubClassOf(obo:OPL_0000149 obo:OPL_0000033) SubClassOf(obo:OPL_0000149 obo:OPL_0000322) SubClassOf(obo:OPL_0000149 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000404)) # Class: obo:OPL_0000150 (gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000150 "A life cycle stage where a cell differentiates into male or female sexual forms.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000150 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000150 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000150 "Priti Parikh") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000150 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000150 "gametocyte stage") SubClassOf(obo:OPL_0000150 obo:UBERON_0000105) # Class: obo:OPL_0000151 (promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000151 "A parasite lifecycle stage of Trypanosomatids. In this stage, the flagellum is found anterior of nucleus and flagellum not attached to the cell body. The kinetoplast is located in front of the nucleus, near the anterior end of the body. (Wikipedia: Trypanosomatid)") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000151 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000151 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000151 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000151 "promastigote stage") SubClassOf(obo:OPL_0000151 obo:OPL_0000181) SubClassOf(obo:OPL_0000151 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5654)) # Class: obo:OPL_0000152 (sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000152 "A parasite lifecycle stage of some sporozoans where cells divide through sporogony producing daughter cells called sporozoites that infect new hosts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000152 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000152 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000152 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000152 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarS.htm") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000152 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000152 "sporozoite stage") SubClassOf(obo:OPL_0000152 obo:OPL_0000181) SubClassOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000153 (ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000153 "A parasite lifecycle stage of some sporozoans where motile and elongated zygote is formed by the fertilization of the macrogamete during the sexual reproductive phase of the sporozoan life cycle, specifically the malarial parasite Plasmodium.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000153 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000153 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000153 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000153 "Mosby's Medical Dictionary, 8th edition. � 2009, Elsevier. (http://medical-dictionary.thefreedictionary.com/ookinete)") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000153 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000153 "ookinete stage") SubClassOf(obo:OPL_0000153 obo:OPL_0000181) SubClassOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000154 (Glossina salivary gland) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000154 "A salivary gland that is a part of or originated from a tsetse fly of genus Glossina.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000154 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000154 "Glossina salivary gland") EquivalentClasses(obo:OPL_0000154 ObjectIntersectionOf(obo:UBERON_0001044 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7393))) SubClassOf(obo:OPL_0000154 obo:UBERON_0001044) # Class: obo:OPL_0000155 (obsolete_Plasmodium falciparum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000155 "Plasmodium falciparum is a protozoan parasite, one of the species of Plasmodium that cause malignant malaria in humans. It is transmitted by the female Anopheles mosquito.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000155 "Replaced by NCBITaxon term. Definition and axioms were added by OPL developers.") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000155 "P. falciparum") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000155 "Wikipedia: Plasmodium falciparum") AnnotationAssertion(obo:IAO_0100001 obo:OPL_0000155 obo:NCBITaxon_5833) AnnotationAssertion(rdfs:label obo:OPL_0000155 "obsolete_Plasmodium falciparum") AnnotationAssertion(owl:deprecated obo:OPL_0000155 "true"^^xsd:boolean) SubClassOf(obo:OPL_0000155 oboInOwl:ObsoleteClass) # Class: obo:OPL_0000156 (Schistosoma japonicum lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000156 "A lifecycle stage of Schistosoma japonicum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000156 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000156 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000156 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000156 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000156 "S. japonicum lifecycle stage") AnnotationAssertion(rdfs:label obo:OPL_0000156 "Schistosoma japonicum lifecycle stage") EquivalentClasses(obo:OPL_0000156 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000156 obo:OPL_0000181) # Class: obo:OPL_0000157 (Leishmania major amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000157 "An amastigote stage in the lifecycle of Leishmania major that occurs in mammalian hosts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000157 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000157 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000157 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000157 "L. major amastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000157 "Leishmania major amastigote stage") EquivalentClasses(obo:OPL_0000157 ObjectIntersectionOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5664))) SubClassOf(obo:OPL_0000157 obo:OPL_0000114) SubClassOf(obo:OPL_0000157 obo:OPL_0000209) SubClassOf(obo:OPL_0000157 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000158 (Plasmodium falciparum schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000158 "A schizont stage in the Plasmodium falciparum lifecycle that occurs in erythrocytes or in hepatocytes.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000158 "updated according to OPL terms Plasmodium final excel file from C. Janse, S. Khan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000158 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000158 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000158 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000158 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000158 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000158 "P. falciparum schizont stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000158 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000158 "Plasmodium falciparum schizont stage") EquivalentClasses(obo:OPL_0000158 ObjectIntersectionOf(obo:OPL_0000084 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000158 obo:OPL_0000165) SubClassOf(obo:OPL_0000158 obo:OPL_0000297) SubClassOf(obo:OPL_0000158 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) SubClassOf(obo:OPL_0000158 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000159 (Schistosoma japonicum 3 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000159 "A 3 days schistosomulum stage of Schistosoma japonicum that occurs in the definitive host 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000159 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000159 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000159 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000159 "S. japonicum 3 day schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000159 "Schistosoma japonicum 3 day schistosomulum stage") EquivalentClasses(obo:OPL_0000159 ObjectIntersectionOf(obo:OPL_0000221 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000159 obo:OPL_0000046) SubClassOf(obo:OPL_0000159 obo:OPL_0000118) SubClassOf(obo:OPL_0000159 obo:OPL_0000221) SubClassOf(obo:OPL_0000159 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000316)) # Class: obo:OPL_0000160 (Leishmania major procyclic promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000160 "A Leishmania major promastigote that is found in the alimentary tract of an insect vector. It is non-infective to its mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000160 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000160 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000160 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000160 "L. major procyclic promastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000160 "PMID:11748963") AnnotationAssertion(rdfs:label obo:OPL_0000160 "Leishmania major procyclic promastigote") SubClassOf(obo:OPL_0000160 obo:OPL_0000016) SubClassOf(obo:OPL_0000160 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000058)) SubClassOf(obo:OPL_0000160 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000194)) # Class: obo:OPL_0000161 (Plasmodium falciparum zygote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000161 "A Plasmodium falciparum zygote is formed after fertilisation of the macrogamete by a microgamete in the midgut of the mosquito vector. This round form is the only diploid stage in the Plasmodium falciparum life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000161 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000161 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000161 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000161 "P. Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000161 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000161 "P. falciparum zygote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000161 "Wikipedia: Plasmodium falciparum biology") AnnotationAssertion(rdfs:label obo:OPL_0000161 "Plasmodium falciparum zygote") SubClassOf(obo:OPL_0000161 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000161 obo:OPL_0000285) SubClassOf(obo:OPL_0000161 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000199)) SubClassOf(obo:OPL_0000161 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000162 (Plasmodium falciparum exflagellated microgametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000162 "A Plasmodium falciparum microgametocyte that is matured with flagellated motile microgametes still attached to its central body. Exflagellated microgametocyte of Plasmodium falciparum is found in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000162 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000162 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000162 "Matt Berriman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000162 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000162 "P. falciparum exflagellated microgametocyte") AnnotationAssertion(rdfs:label obo:OPL_0000162 "Plasmodium falciparum exflagellated microgametocyte") SubClassOf(obo:OPL_0000162 obo:OPL_0000050) SubClassOf(obo:OPL_0000162 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000007)) SubClassOf(obo:OPL_0000162 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000163 (Schistosoma haematobium daughter sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000163 "A daughter sporocyst stage in the lifecycle of Schistosoma haematobium that occurs within the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000163 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000163 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000163 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000163 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000163 "S. haematobium daughter sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000163 "Schistosoma haematobium daughter sporocyst stage") EquivalentClasses(obo:OPL_0000163 ObjectIntersectionOf(obo:OPL_0000086 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000163 obo:OPL_0000008) SubClassOf(obo:OPL_0000163 obo:OPL_0000086) SubClassOf(obo:OPL_0000163 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000083)) # Class: obo:OPL_0000164 (Trypanosoma cruzi trypomastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000164 "A Trypanosoma cruzi that is found in the bloodstream of infected mammals. It is a non-dividing form that is infectious for its insect vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000164 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000164 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000164 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000164 "T. cruzi trypomastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000164 "http://dna.kdna.ucla.edu/parasite_course-old/cruzi_files/intro.htm") AnnotationAssertion(rdfs:label obo:OPL_0000164 "Trypanosoma cruzi trypomastigote") SubClassOf(obo:OPL_0000164 obo:NCBITaxon_5693) SubClassOf(obo:OPL_0000164 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000169)) SubClassOf(obo:OPL_0000164 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000004)) SubClassOf(obo:OPL_0000164 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000320)) SubClassOf(obo:OPL_0000164 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000165 (Plasmodium falciparum lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000165 "A lifecycle stage of Plasmodium falciparum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000165 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000165 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000165 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000165 "P. falciparum lifecycle stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000165 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000165 "Plasmodium falciparum lifecycle stage") EquivalentClasses(obo:OPL_0000165 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000165 obo:OPL_0000181) # Class: obo:OPL_0000166 (Schistosoma haematobium sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000166 "A Schistosoma haematobium that is an elongated sac and develops from the miracidium within the snail indermediate host, and that either produces more sporocysts or develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000166 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000166 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000166 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000166 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000166 "S. haematobium sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000166 "Schistosoma haematobium sporocyst") SubClassOf(obo:OPL_0000166 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000166 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000008)) # Class: obo:OPL_0000167 (Plasmodium falciparum macrogamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000167 "A Plasmodium falciparum gamete that is a matured form of the macrogametocyte and is found in the midgut of a mosquito vector. The macrogamete is fertilized by the microgamete, forming the zygote") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000167 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000167 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000167 "P. falciparum macrogamete") AnnotationAssertion(rdfs:label obo:OPL_0000167 "Plasmodium falciparum macrogamete") SubClassOf(obo:OPL_0000167 obo:OPL_0000258) SubClassOf(obo:OPL_0000167 obo:OPL_0000265) SubClassOf(obo:OPL_0000167 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000075)) SubClassOf(obo:OPL_0000167 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000168 (Schistosoma mansoni cercaria) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000168 "A Schistosoma mansoni in a parasitic larval form that develops in a freshwater snail and is released into the water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000168 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000168 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000168 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000168 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000168 "S. mansoni cercaria") AnnotationAssertion(rdfs:label obo:OPL_0000168 "Schistosoma mansoni cercaria") SubClassOf(obo:OPL_0000168 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000168 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000210)) # Class: obo:OPL_0000169 (Trypanosoma cruzi trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000169 "A trypomastigote stage in the Trypanosoma cruzi lifecycle that occurs either in the vertebrate host or an insect vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000169 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000169 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000169 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000169 "T. cruzi trypomastigote stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000169 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000169 "Trypanosoma cruzi trypomastigote stage") EquivalentClasses(obo:OPL_0000169 ObjectIntersectionOf(obo:OPL_0000033 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5693))) SubClassOf(obo:OPL_0000169 obo:OPL_0000033) SubClassOf(obo:OPL_0000169 obo:OPL_0000185) SubClassOf(obo:OPL_0000169 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000004)) SubClassOf(obo:OPL_0000169 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000320)) SubClassOf(obo:OPL_0000169 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000170 (Plasmodium falciparum microgamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000170 "A microgamete stage in the Plasmodium falciparum lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000170 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000170 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000170 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000170 "P. falciparum microgamete stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000170 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000170 "Plasmodium falciparum microgamete stage") EquivalentClasses(obo:OPL_0000170 ObjectIntersectionOf(obo:OPL_0000026 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000170 obo:OPL_0000262) SubClassOf(obo:OPL_0000170 obo:OPL_0000288) SubClassOf(obo:OPL_0000170 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000171 (human parasite role) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000171 "A parasite role which is realized only during parasitic infection of a human.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000171 "previous def was not about a role.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000171 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000171 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000171 "human parasite role") SubClassOf(obo:OPL_0000171 obo:IDO_0000403) # Class: obo:OPL_0000172 (24 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000172 "A schistosomulum stage that occurs in 24 hours after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000172 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000172 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000172 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000172 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000172 "24 hour schistosomulum stage") SubClassOf(obo:OPL_0000172 obo:OPL_0000095) # Class: obo:OPL_0000173 (hypnozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000173 "A parasite lifecycle stage of some Plasmodium sp., such as Plasmodium vivax and Plasmodium ovale, the parasite in the liver cells do not achieve matuaration to a schizont immediately, but remain in a dormant form. This dormant form stage is called hypnozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000173 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000173 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000173 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000173 "Wikipedia: Plasmodium") AnnotationAssertion(rdfs:label obo:OPL_0000173 "hypnozoite stage") SubClassOf(obo:OPL_0000173 obo:OPL_0000181) SubClassOf(obo:OPL_0000173 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000174 (Plasmodium falciparum microgamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000174 "A Plasmodium falciparum gamete that is a matured form of exflagellated microgametocyte and found in the midgut of a mosquito vector. The microgamete fertilizes the macrogamete, forming the zygote.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000174 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000174 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000174 "P. falciparum microgamete") AnnotationAssertion(rdfs:label obo:OPL_0000174 "Plasmodium falciparum microgamete") SubClassOf(obo:OPL_0000174 obo:OPL_0000258) SubClassOf(obo:OPL_0000174 obo:OPL_0000266) SubClassOf(obo:OPL_0000174 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000170)) SubClassOf(obo:OPL_0000174 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000175 (Trypanosoma brucei trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000175 "A trypomastigote stage in the Trypanosoma brucei lifecycle that occurs in the vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000175 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000175 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000175 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000175 "T. brucei trypomastigote stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000175 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000175 "Trypanosoma brucei trypomastigote stage") EquivalentClasses(obo:OPL_0000175 ObjectIntersectionOf(obo:OPL_0000033 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5691))) SubClassOf(obo:OPL_0000175 obo:OPL_0000033) SubClassOf(obo:OPL_0000175 obo:OPL_0000048) SubClassOf(obo:OPL_0000175 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000313)) SubClassOf(obo:OPL_0000175 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000320)) # Class: obo:OPL_0000176 (Homo sapiens ureter) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000176 "A ureter that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000176 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000176 "human ureter") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000176 "FMA:9704") AnnotationAssertion(rdfs:label obo:OPL_0000176 "Homo sapiens ureter") EquivalentClasses(obo:OPL_0000176 ObjectIntersectionOf(obo:UBERON_0000056 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000176 obo:UBERON_0000056) # Class: obo:OPL_0000177 (Schistosoma haematobium lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000177 "A lifecycle stage of Schistosoma haematobium.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000177 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000177 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000177 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000177 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000177 "S. haematobium lifecycle stage") AnnotationAssertion(rdfs:label obo:OPL_0000177 "Schistosoma haematobium lifecycle stage") EquivalentClasses(obo:OPL_0000177 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000177 obo:OPL_0000181) # Class: obo:OPL_0000178 (Schistosoma haematobium schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000178 "A Schistosoma haematobium in a migratory larval form that is found within blood vessels of the definitive host, mammal, and develops into the flatworm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000178 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000178 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000178 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000178 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000178 "S. haematobium schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000178 "Schistosoma haematobium schistosomulum") SubClassOf(obo:OPL_0000178 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000178 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000197)) # Class: obo:OPL_0000179 (Schistosoma japonicum miracidium) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000179 "A Schistosoma japonicum in a free-living motile form that is covered with cilia, and develops in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000179 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000179 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000179 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000179 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000179 "S. japonicum miracidium") AnnotationAssertion(rdfs:label obo:OPL_0000179 "Schistosoma japonicum miracidium") SubClassOf(obo:OPL_0000179 obo:NCBITaxon_6182) SubClassOf(obo:OPL_0000179 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000023)) # Class: obo:OPL_0000180 (egg stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000180 "A life cycle stage of some parasites in which a non-operculate egg emerges from the adult female worm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000180 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000180 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000180 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000180 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000180 "egg stage") SubClassOf(obo:OPL_0000180 obo:UBERON_0000105) # Class: obo:OPL_0000181 (parasite lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000181 "A life cycle stage of a parasite.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000181 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000181 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000181 "Priti Parikh") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000181 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000181 "parasite lifecycle stage") EquivalentClasses(obo:OPL_0000181 ObjectIntersectionOf(obo:UBERON_0000105 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232))) SubClassOf(obo:OPL_0000181 obo:UBERON_0000105) # Class: obo:OPL_0000182 (Trypanosoma brucei trypomastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000182 "A Trypanosoma brucei that is a Trypomastigote form of Trypanosoma brucei. In this form the large kinetoplast is postnuclear and is at the most posterior part of the body and the flagellum emerges from the flagellar pocket, and runs along the entire length of the body as an undulating membrane.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000182 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000182 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000182 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000182 "T. brucei trypomastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000182 "http://dna.kdna.ucla.edu/parasite_course-old/african%20tryps%20new_files/contents1.htm") AnnotationAssertion(rdfs:label obo:OPL_0000182 "Trypanosoma brucei trypomastigote") SubClassOf(obo:OPL_0000182 obo:NCBITaxon_5691) SubClassOf(obo:OPL_0000182 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000175)) SubClassOf(obo:OPL_0000182 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000313)) SubClassOf(obo:OPL_0000182 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000320)) # Class: obo:OPL_0000183 (3 week parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000183 "A parasitic worm stage of development 3 weeks post differentiation into a worm form.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000183 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000183 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000183 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000183 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000183 "3 week parasitic worm stage") SubClassOf(obo:OPL_0000183 obo:OPL_0000082) # Class: obo:OPL_0000184 (Schistosoma japonicum mother sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000184 "A mother sporocyst stage in the Schistosoma japonicum lifecycle that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000184 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000184 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000184 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000184 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000184 "S. japonicum mother sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000184 "Schistosoma japonicum mother sporocyst stage") EquivalentClasses(obo:OPL_0000184 ObjectIntersectionOf(obo:OPL_0000214 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000184 obo:OPL_0000186) SubClassOf(obo:OPL_0000184 obo:OPL_0000214) # Class: obo:OPL_0000185 (Trypanosoma cruzi lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000185 "A lifecycle stage of Trypanosoma cruzi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000185 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000185 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000185 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000185 "T. cruzi lifecycle stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000185 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000185 "Trypanosoma cruzi lifecycle stage") EquivalentClasses(obo:OPL_0000185 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5693))) SubClassOf(obo:OPL_0000185 obo:OPL_0000181) # Class: obo:OPL_0000186 (Schistosoma japonicum sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000186 "A sporocyst stage in the Schistosoma japonicum lifecycle that is found within the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000186 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000186 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000186 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000186 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000186 "S. japonicum sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000186 "Schistosoma japonicum sporocyst stage") EquivalentClasses(obo:OPL_0000186 ObjectIntersectionOf(obo:OPL_0000098 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000186 obo:OPL_0000098) SubClassOf(obo:OPL_0000186 obo:OPL_0000156) # Class: obo:OPL_0000187 (Plasmodium falciparum ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000187 "An ookinete stage in the Plasmodium falciparum lifecycle that occurs in the midgut of a mosquito vector and on the outside of the midgut.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000187 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000187 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000187 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000187 "P. falciparum ookinete stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000187 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000187 "Plasmodium falciparum ookinete stage") EquivalentClasses(obo:OPL_0000187 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000187 obo:OPL_0000165) SubClassOf(obo:OPL_0000187 obo:OPL_0000296) SubClassOf(obo:OPL_0000187 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000188 (obsolete_Trypanosoma brucei bloodstream trypomastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000188 "Bloodstream trypomastigote stage in the lifecycle of Trypanosoma brucei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000188 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000188 "T. brucei bloodstream trypomastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000188 "obsolete_Trypanosoma brucei bloodstream trypomastigote stage") AnnotationAssertion(owl:deprecated obo:OPL_0000188 "true"^^xsd:boolean) SubClassOf(obo:OPL_0000188 oboInOwl:ObsoleteClass) # Class: obo:OPL_0000189 (Leishmania major promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000189 "A promastigote stage in the Leishmania major lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000189 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000189 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000189 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000189 "L. major promastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000189 "Leishmania major promastigote stage") EquivalentClasses(obo:OPL_0000189 ObjectIntersectionOf(obo:OPL_0000151 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5664))) SubClassOf(obo:OPL_0000189 obo:OPL_0000151) SubClassOf(obo:OPL_0000189 obo:OPL_0000209) SubClassOf(obo:OPL_0000189 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000015)) SubClassOf(obo:OPL_0000189 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000194)) SubClassOf(obo:OPL_0000189 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000190 (Plasmodium falciparum hepatic schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000190 "A Plasmodium falciparum schizont that is found in infected hepatocytes (i.e., liver cells) of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000190 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000190 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000190 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000190 "P. falciparum hepatic schizont") AnnotationAssertion(rdfs:label obo:OPL_0000190 "Plasmodium falciparum hepatic schizont") SubClassOf(obo:OPL_0000190 obo:OPL_0000060) SubClassOf(obo:OPL_0000190 obo:OPL_0000277) SubClassOf(obo:OPL_0000190 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000093)) SubClassOf(obo:OPL_0000190 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) # Class: obo:OPL_0000191 (Schistosoma mansoni daughter sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000191 "A Schistosoma mansoni sporocyst that develops into cercariae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000191 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000191 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000191 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000191 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000191 "S. mansoni daughter sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000191 "Schistosoma mansoni daughter sporocyst") SubClassOf(obo:OPL_0000191 obo:OPL_0000147) SubClassOf(obo:OPL_0000191 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000220)) SubClassOf(obo:OPL_0000191 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000104)) # Class: obo:OPL_0000192 (Plasmodium falciparum gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000192 "A gametocyte stage in the lifecycle of Plasmodium falciparum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000192 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000192 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000192 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000192 "P. falciparum gametocyte stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000192 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000192 "Plasmodium falciparum gametocyte stage") EquivalentClasses(obo:OPL_0000192 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000192 obo:OPL_0000165) SubClassOf(obo:OPL_0000192 obo:OPL_0000289) SubClassOf(obo:OPL_0000192 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000192 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000193 (Schistosoma japonicum 3 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000193 "A 3 hours schistosomulum stage of Schistosoma japonicum that occurs in the definitive host 3 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000193 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000193 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000193 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000193 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000193 "S. japonicum 3 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000193 "Schistosoma japonicum 3 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000193 ObjectIntersectionOf(obo:OPL_0000017 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000193 obo:OPL_0000017) SubClassOf(obo:OPL_0000193 obo:OPL_0000046) SubClassOf(obo:OPL_0000193 obo:OPL_0000118) SubClassOf(obo:OPL_0000193 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000194 (Phlebotominae midgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000194 "A midgut that is a part of or originated from a sand fly of genus Phlebotominae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000194 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000194 "Phlebotominae midgut") EquivalentClasses(obo:OPL_0000194 ObjectIntersectionOf(obo:UBERON_0001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7198))) SubClassOf(obo:OPL_0000194 obo:UBERON_0001045) # Class: obo:OPL_0000195 (Schistosoma japonicum 24 hour schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000195 "A 24 hours schistosomulum stage of Schistosoma japonicum that occurs in the definitive host 24 hours post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000195 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000195 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000195 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000195 "S. japonicum 24 hour schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000195 "Schistosoma japonicum 24 hour schistosomulum stage") EquivalentClasses(obo:OPL_0000195 ObjectIntersectionOf(obo:OPL_0000172 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000195 obo:OPL_0000046) SubClassOf(obo:OPL_0000195 obo:OPL_0000118) SubClassOf(obo:OPL_0000195 obo:OPL_0000172) SubClassOf(obo:OPL_0000195 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000314)) # Class: obo:OPL_0000196 (Schistosoma mansoni mother sporocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000196 "A Schistosoma mansoni sporocyst that produces more sporocysts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000196 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000196 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000196 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000196 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000196 "S. mansoni mother sporocyst") AnnotationAssertion(rdfs:label obo:OPL_0000196 "Schistosoma mansoni mother sporocyst") SubClassOf(obo:OPL_0000196 obo:OPL_0000147) SubClassOf(obo:OPL_0000196 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000142)) # Class: obo:OPL_0000197 (Schistosoma haematobium schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000197 "A schistosomulum stage of Schistosoma haematobium that occurs in the definitive host and is followed by the parasitic worm stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000197 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000197 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000197 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000197 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000197 "S. haematobium schistosomulum stage") AnnotationAssertion(rdfs:label obo:OPL_0000197 "Schistosoma haematobium schistosomulum stage") EquivalentClasses(obo:OPL_0000197 ObjectIntersectionOf(obo:OPL_0000095 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000197 obo:OPL_0000095) SubClassOf(obo:OPL_0000197 obo:OPL_0000177) # Class: obo:OPL_0000198 (Schistosoma haematobium adult male worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000198 "A Schistosoma haematobium adult worm is a fully developed mature male form of Schistosoma haematobium and capable of sexual reproduction, which lives in the pelvic blood vessels of the vesicle plexis of the mammal host and has 4-5 testes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000198 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000198 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000198 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000198 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000198 "S. haematobium adult male worm") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000198 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000198 "Schistosoma haematobium adult male worm") SubClassOf(obo:OPL_0000198 obo:OPL_0000233) SubClassOf(obo:OPL_0000198 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000228)) # Class: obo:OPL_0000199 (Plasmodium falciparum zygote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000199 "A zygote stage in the Plasmodium falciparum lifecycle that occurs in the midgut of the mosquito vector where a microgamete and a macrogamete fertilizes each other to produce a diploid cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000199 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000199 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000199 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000199 "P. falciparum zygote stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000199 "Wikipedia: Plasmodium falciparum biology") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000199 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000199 "Plasmodium falciparum zygote stage") EquivalentClasses(obo:OPL_0000199 ObjectIntersectionOf(obo:UBERON_0000106 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000199 obo:OPL_0000165) SubClassOf(obo:OPL_0000199 obo:OPL_0000307) SubClassOf(obo:OPL_0000199 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000200 (Schistosoma haematobium egg) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000200 "A Schistosoma haematobium in an egg form that is laid by the female adult worm and released into the host gut where they leave the host in the faeces.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000200 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000200 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000200 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000200 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000200 "S. haematobium egg") AnnotationAssertion(rdfs:label obo:OPL_0000200 "Schistosoma haematobium egg") SubClassOf(obo:OPL_0000200 obo:NCBITaxon_6185) SubClassOf(obo:OPL_0000200 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000125)) # Class: obo:OPL_0000201 (Schistosoma haematobium 6 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000201 "A Schistosoma haematobium schistosomulum in a migratory larval form that is found within blood vessels of mammal, as definitive host, 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000201 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000201 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000201 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000201 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000201 "S. haematobium 6 day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000201 "Schistosoma haematobium 6 day schistosomulum") SubClassOf(obo:OPL_0000201 obo:OPL_0000178) SubClassOf(obo:OPL_0000201 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000124)) SubClassOf(obo:OPL_0000201 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000315)) # Class: obo:OPL_0000202 (Schistosoma haematobium 3 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000202 "A worm stage of Schistosoma haematobium that is found in the pelvic blood vessels of the vesicle plexis of the definitive host 3 weeks after infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000202 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000202 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000202 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000202 "S. haematobium 3 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000202 "Schistosoma haematobium 3 week worm stage") EquivalentClasses(obo:OPL_0000202 ObjectIntersectionOf(obo:OPL_0000183 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000202 obo:OPL_0000091) SubClassOf(obo:OPL_0000202 obo:OPL_0000183) SubClassOf(obo:OPL_0000202 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000219)) # Class: obo:OPL_0000203 (Schistosoma mansoni lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000203 "A lifecycle stage of Schistosoma mansoni.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000203 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000203 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000203 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000203 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000203 "S. mansoni lifecycle stage") AnnotationAssertion(rdfs:label obo:OPL_0000203 "Schistosoma mansoni lifecycle stage") EquivalentClasses(obo:OPL_0000203 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000203 obo:OPL_0000181) # Class: obo:OPL_0000204 (Leishmania major amastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000204 "A Leishmania major that is the intracellular, non-motile form of the parasite found in the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000204 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000204 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000204 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000204 "L. major amastigote") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000204 "http://dna.kdna.ucla.edu/parasite_course-old/leish_files/introduction1.htm") AnnotationAssertion(rdfs:label obo:OPL_0000204 "Leishmania major amastigote") SubClassOf(obo:OPL_0000204 obo:NCBITaxon_5664) SubClassOf(obo:OPL_0000204 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000157)) SubClassOf(obo:OPL_0000204 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000205 (Schistosoma haematobium 3 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000205 "A Schistosoma haematobium schistosomulum in a migratory larval form that is found within blood vessels of mammal, as definitive host, 3 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000205 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000205 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000205 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000205 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000205 "S. haematobium 3 day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000205 "Schistosoma haematobium 3 day schistosomulum") SubClassOf(obo:OPL_0000205 obo:OPL_0000178) SubClassOf(obo:OPL_0000205 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000062)) SubClassOf(obo:OPL_0000205 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000315)) # Class: obo:OPL_0000206 (Plasmodium falciparum macrogametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000206 "A Plasmodium falciparum gametocyte that is a female gametocyte and found either in bloodstream of a human host or midgut of mosquito vector. The macrogametocyte is a precursor of the macrogamete.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000206 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000206 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000206 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000206 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000206 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000206 "P. falciparum macrogametocyte") AnnotationAssertion(rdfs:label obo:OPL_0000206 "Plasmodium falciparum macrogametocyte") SubClassOf(obo:OPL_0000206 obo:OPL_0000249) SubClassOf(obo:OPL_0000206 obo:OPL_0000268) SubClassOf(obo:OPL_0000206 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000068)) SubClassOf(obo:OPL_0000206 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000206 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000207 (Plasmodium falciparum erythrocytic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000207 "An erythrocytic trophozoite stage in the Plasmodium falciparum life cycle that occurs in erythrocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000207 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000207 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000207 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000207 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000207 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000207 "P. falciparum erythrocytic trophozoite stage") AnnotationAssertion(rdfs:label obo:OPL_0000207 "Plasmodium falciparum erythrocytic trophozoite stage") EquivalentClasses(obo:OPL_0000207 ObjectIntersectionOf(obo:OPL_0000243 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000207 obo:OPL_0000251) SubClassOf(obo:OPL_0000207 obo:OPL_0000304) SubClassOf(obo:OPL_0000207 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000208 (Schistosoma mansoni miracidium) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000208 "A Schistosoma mansoni in a free-living motile form that is covered with cilia and develops in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000208 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000208 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000208 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000208 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000208 "S. mansoni miracidium") AnnotationAssertion(rdfs:label obo:OPL_0000208 "Schistosoma mansoni miracidium") SubClassOf(obo:OPL_0000208 obo:NCBITaxon_6183) SubClassOf(obo:OPL_0000208 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000112)) # Class: obo:OPL_0000209 (Leishmania major lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000209 "A parasite lifecycle stage of Leishmania major.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000209 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000209 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000209 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000209 "L. major lifecycle stage") AnnotationAssertion(rdfs:label obo:OPL_0000209 "Leishmania major lifecycle stage") EquivalentClasses(obo:OPL_0000209 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5664))) SubClassOf(obo:OPL_0000209 obo:OPL_0000181) # Class: obo:OPL_0000210 (Schistosoma mansoni cercaria stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000210 "A cercaria stage in the lifecycle of Schistosoma mansoni that occurs in a freshwater snail and in fresh water.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000210 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000210 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000210 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000210 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000210 "S. mansoni cercaria stage") AnnotationAssertion(rdfs:label obo:OPL_0000210 "Schistosoma mansoni cercaria stage") EquivalentClasses(obo:OPL_0000210 ObjectIntersectionOf(obo:OPL_0000070 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000210 obo:OPL_0000070) SubClassOf(obo:OPL_0000210 obo:OPL_0000203) # Class: obo:OPL_0000211 (Schistosoma mansoni worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000211 "A worm stage of Schistosoma mansoni that is fully developed mature form and found in the small inferior mesenteric blood vessels surrounding the large intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000211 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000211 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000211 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000211 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000211 "S. mansoni worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000211 "Schistosoma mansoni worm stage") EquivalentClasses(obo:OPL_0000211 ObjectIntersectionOf(obo:OPL_0000082 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000211 obo:OPL_0000082) SubClassOf(obo:OPL_0000211 obo:OPL_0000203) # Class: obo:OPL_0000212 (Schistosoma haematobium mother sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000212 "A mother sporocyst stage in the Schistosoma haematobium lifecycle that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000212 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000212 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000212 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000212 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000212 "S. haematobium mother sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000212 "Schistosoma haematobium mother sporocyst stage") EquivalentClasses(obo:OPL_0000212 ObjectIntersectionOf(obo:OPL_0000214 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000212 obo:OPL_0000008) SubClassOf(obo:OPL_0000212 obo:OPL_0000214) # Class: obo:OPL_0000213 (vesical venus plexus) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000213 "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000213 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000213 "Wikipedia - Vesical venus plexus") AnnotationAssertion(rdfs:label obo:OPL_0000213 "vesical venus plexus") SubClassOf(obo:OPL_0000213 obo:UBERON_0000465) # Class: obo:OPL_0000214 (mother sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000214 "A sporocyst stage of Digenea formed after penetration of the miracidium into a mollusc; it lacks a gut and gives rise asexually to daughter sporocysts or rediae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000214 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000214 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000214 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000214 "http://www.biology.ualberta.ca/parasites/parpub/text/text/glossarM.htm") AnnotationAssertion(rdfs:label obo:OPL_0000214 "mother sporocyst stage") SubClassOf(obo:OPL_0000214 obo:OPL_0000098) # Class: obo:OPL_0000215 (Glossina midgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000215 "A midgut that is a part of or originated from a tsetse fly of genus Glossina.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000215 "Priti Parikh") AnnotationAssertion(rdfs:label obo:OPL_0000215 "Glossina midgut") EquivalentClasses(obo:OPL_0000215 ObjectIntersectionOf(obo:UBERON_0001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7393))) SubClassOf(obo:OPL_0000215 obo:UBERON_0001045) # Class: obo:OPL_0000216 (Trypanosoma brucei epimastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000216 "An epimastigote stage in the lifecycle of Trypanosoma brucei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000216 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000216 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000216 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000216 "T. brucei epimastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000216 "Trypanosoma brucei epimastigote stage") EquivalentClasses(obo:OPL_0000216 ObjectIntersectionOf(obo:OPL_0000108 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5691))) SubClassOf(obo:OPL_0000216 obo:OPL_0000048) SubClassOf(obo:OPL_0000216 obo:OPL_0000108) SubClassOf(obo:OPL_0000216 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000154)) # Class: obo:OPL_0000217 (Schistosoma mansoni 7 week worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000217 "A 7 week worm stage of Schistosoma mansoni that is the mature stage of Schistosoma mansoni and found in the small inferior mesenteric blood vessels surrounding the large intestine of the definitive host 7 weeks after weeks after infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000217 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000217 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000217 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000217 "S. mansoni 7 week worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000217 "Schistosoma mansoni 7 week worm stage") EquivalentClasses(obo:OPL_0000217 ObjectIntersectionOf(obo:OPL_0000148 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000217 obo:OPL_0000148) SubClassOf(obo:OPL_0000217 obo:OPL_0000211) SubClassOf(obo:OPL_0000217 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000317)) SubClassOf(obo:OPL_0000217 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000318)) # Class: obo:OPL_0000218 (Schistosoma mansoni 6 day schistosomulum) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000218 "A Schistosoma mansoni schistosomulum in a migratory larval formi that is found within blood vessels of the definitive host, mammal, 6 days post-infection.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000218 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000218 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000218 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000218 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000218 "S. mansoni 6day schistosomulum") AnnotationAssertion(rdfs:label obo:OPL_0000218 "Schistosoma mansoni 6 day schistosomulum") SubClassOf(obo:OPL_0000218 obo:OPL_0000038) SubClassOf(obo:OPL_0000218 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000045)) SubClassOf(obo:OPL_0000218 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000316)) # Class: obo:OPL_0000219 (Homo sapiens urinary bladder) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000219 "A urinary bladder that is a part of or originated from a human (Homo sapiens).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000219 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000219 "human bladder") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000219 "human urinary bladder") AnnotationAssertion(oboInOwl:hasDbXref obo:OPL_0000219 "FMA:15900") AnnotationAssertion(rdfs:label obo:OPL_0000219 "Homo sapiens urinary bladder") EquivalentClasses(obo:OPL_0000219 ObjectIntersectionOf(obo:UBERON_0001255 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606))) SubClassOf(obo:OPL_0000219 obo:UBERON_0001255) # Class: obo:OPL_0000220 (Schistosoma mansoni daughter sporocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000220 "A daughter sporocyst stage of Schistosoma mansoni that occurs in the snail intermediate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000220 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000220 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000220 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000220 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000220 "S. mansoni daughter sporocyst stage") AnnotationAssertion(rdfs:label obo:OPL_0000220 "Schistosoma mansoni daughter sporocyst stage") EquivalentClasses(obo:OPL_0000220 ObjectIntersectionOf(obo:OPL_0000086 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000220 obo:OPL_0000041) SubClassOf(obo:OPL_0000220 obo:OPL_0000086) SubClassOf(obo:OPL_0000220 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000104)) # Class: obo:OPL_0000221 (3 day schistosomulum stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000221 "A schistosomulum stage that occurs in 3 days after infection of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000221 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000221 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000221 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000221 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000221 "PMID:19885392") AnnotationAssertion(rdfs:label obo:OPL_0000221 "3 day schistosomulum stage") SubClassOf(obo:OPL_0000221 obo:OPL_0000095) # Class: obo:OPL_0000222 (Plasmodium falciparum erythrocytic ring trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000222 "A Plasmodium falciparum erythrocytic trophozoite that is found in erythrocytes. It is a young trophozoite stage that has a typical 'ring-like' appearance. Ring-form trophozoites of Plasmodium falciparum are often thin and delicate, measuring on average 1/5 the diameter of the red blood cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000222 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000222 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000222 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000222 "Priti Parkh") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000222 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000222 "P. falciparum erythrocytic ring trophozoite") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000222 "http://www.dpd.cdc.gov/dpdx/html/frames/m-r/malaria/falciparum/body_malariadffalcring.htm") AnnotationAssertion(rdfs:label obo:OPL_0000222 "Plasmodium falciparum erythrocytic ring trophozoite") SubClassOf(obo:OPL_0000222 obo:OPL_0000244) SubClassOf(obo:OPL_0000222 obo:OPL_0000283) SubClassOf(obo:OPL_0000222 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000042)) # Class: obo:OPL_0000223 (Trypanosoma cruzi epimastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000223 "An epimastigote stage in the lifecycle of Trypanosoma cruzi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000223 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000223 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000223 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000223 "T. cruzi epimastigote stage") AnnotationAssertion(rdfs:label obo:OPL_0000223 "Trypanosoma cruzi epimastigote stage") EquivalentClasses(obo:OPL_0000223 ObjectIntersectionOf(obo:OPL_0000108 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5693))) SubClassOf(obo:OPL_0000223 obo:OPL_0000108) SubClassOf(obo:OPL_0000223 obo:OPL_0000185) SubClassOf(obo:OPL_0000223 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000088)) # Class: obo:OPL_0000224 (Schistosoma japonicum adult female worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000224 "An adult female worm stage of Schistosoma japonicum that is fully developed mature female stage of Schistosoma japonicum and occurs in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000224 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000224 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000224 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000224 "S. japonicum adult female worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000224 "Schistosoma japonicum adult female worm stage") EquivalentClasses(obo:OPL_0000224 ObjectIntersectionOf(obo:OPL_0000127 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000224 obo:OPL_0000127) SubClassOf(obo:OPL_0000224 obo:OPL_0000309) # Class: obo:OPL_0000225 (Schistosoma japonicum adult male worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000225 "An adult male worm stage of Schistosoma japonicum that is fully developed mature male stage of Schistosoma japonicum and occurs in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000225 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000225 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000225 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000225 "S. japonicum adult male worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000225 "Schistosoma japonicum adult male worm stage") EquivalentClasses(obo:OPL_0000225 ObjectIntersectionOf(obo:OPL_0000239 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000225 obo:OPL_0000239) SubClassOf(obo:OPL_0000225 obo:OPL_0000309) # Class: obo:OPL_0000226 (Schistosoma japonicum adult worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000226 "A Schistosoma japonicum worm is a fully developed mature form of Schistosoma japonicum and capable of sexual reproduction, which lives in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000226 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000226 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000226 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000226 "S. japonicum adult worm") AnnotationAssertion(rdfs:label obo:OPL_0000226 "Schistosoma japonicum adult worm") SubClassOf(obo:OPL_0000226 obo:OPL_0000126) SubClassOf(obo:OPL_0000226 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000309)) # Class: obo:OPL_0000227 (Schistosoma mansoni adult worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000227 "A Schistosoma mansoni worm is the fully developed mature form of Schistosoma mansoni and capable of sexual reproduction, which lives in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000227 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000227 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000227 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000227 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000227 "S. mansoni adult worm") AnnotationAssertion(rdfs:label obo:OPL_0000227 "Schistosoma mansoni adult worm") SubClassOf(obo:OPL_0000227 obo:OPL_0000128) SubClassOf(obo:OPL_0000227 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000319)) # Class: obo:OPL_0000228 (Schistosoma haematobium adult male worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000228 "An adult male worm stage of Schistosoma haematobium that is fully developed mature male stage of Schistosoma haematobium and found in the pelvic blood vessels of the vesicle plexis of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000228 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000228 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000228 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000228 "S. haematobium adult male worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000228 "Schistosoma haematobium adult male worm stage") EquivalentClasses(obo:OPL_0000228 ObjectIntersectionOf(obo:OPL_0000239 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000228 obo:OPL_0000239) SubClassOf(obo:OPL_0000228 obo:OPL_0000308) # Class: obo:OPL_0000229 (Schistosoma japonicum adult male worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000229 "A Schistosoma japonicum adult worm is a fully developed mature male form of Schistosoma japonicum and capable of sexual reproduction, which lives in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammal host and has 4-5 testes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000229 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000229 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000229 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000229 "S. japonicum adult male worm") AnnotationAssertion(rdfs:label obo:OPL_0000229 "Schistosoma japonicum adult male worm") SubClassOf(obo:OPL_0000229 obo:OPL_0000226) SubClassOf(obo:OPL_0000229 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000225)) # Class: obo:OPL_0000230 (Schistosoma mansoni adult male worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000230 "An adult male worm stage of Schistosoma mansoni that is fully developed mature male stage of Schistosoma mansoni and found in the small inferior mesenteric blood vessels surrounding the large intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000230 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000230 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000230 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000230 "S. mansoni adult male worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000230 "Schistosoma mansoni adult male worm stage") EquivalentClasses(obo:OPL_0000230 ObjectIntersectionOf(obo:OPL_0000239 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000230 obo:OPL_0000239) SubClassOf(obo:OPL_0000230 obo:OPL_0000319) # Class: obo:OPL_0000231 (Schistosoma mansoni adult female worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000231 "A Schistosoma mansoni adult worm is the fully developed mature female form of Schistosoma mansoni and capable of sexual reproduction, which lives within the gynacophoric canal of the adult male worm in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000231 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000231 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000231 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000231 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000231 "S. mansoni adult female worm") AnnotationAssertion(rdfs:label obo:OPL_0000231 "Schistosoma mansoni adult female worm") SubClassOf(obo:OPL_0000231 obo:OPL_0000227) SubClassOf(obo:OPL_0000231 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000236)) # Class: obo:OPL_0000232 (parasite organism) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000232 "An organism living in, with, or on another organism in parasitism. Individual members of parasite species, such as Leishmania, Plasmodium, Trypanosoma, etc. are members of this class.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000232 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000232 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000232 "http://www.merriam-webster.com/dictionary/parasite?show=0&t=1310398415") AnnotationAssertion(rdfs:label obo:OPL_0000232 "parasite organism") EquivalentClasses(obo:OPL_0000232 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000403))) SubClassOf(obo:OPL_0000232 obo:OBI_0100026) # Class: obo:OPL_0000233 (Schistosoma haematobium adult worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000233 "A Schistosoma haematobium worm is a fully developed mature form of Schistosoma haematobium and capable of sexual reproduction, which lives in the pelvic blood vessels of the vesicle plexis of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000233 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000233 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000233 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000233 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000233 "S. haematobium adult worm") AnnotationAssertion(rdfs:label obo:OPL_0000233 "Schistosoma haematobium adult worm") SubClassOf(obo:OPL_0000233 obo:OPL_0000037) SubClassOf(obo:OPL_0000233 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000308)) # Class: obo:OPL_0000234 (Schistosoma haematobium adult female worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000234 "An adult female worm stage of Schistosoma haematobium that is fully developed mature female stage of Schistosoma haematobium and found in the pelvic blood vessels of the vesicle plexis of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000234 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000234 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000234 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000234 "S. haematobium adult female worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000234 "Schistosoma haematobium adult female worm stage") EquivalentClasses(obo:OPL_0000234 ObjectIntersectionOf(obo:OPL_0000127 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000234 obo:OPL_0000127) SubClassOf(obo:OPL_0000234 obo:OPL_0000308) # Class: obo:OPL_0000235 (Schistosoma haematobium adult female worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000235 "A Schistosoma haematobium adult worm is a fully developed mature female form of Schistosoma haematobium and capable of sexual reproduction, which lives within the gynacophoric canal of the adult male worm in the pelvic blood vessels of the vesicle plexis of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000235 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000235 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000235 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000235 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000235 "S. haematobium adult female worm") AnnotationAssertion(rdfs:label obo:OPL_0000235 "Schistosoma haematobium adult female worm") SubClassOf(obo:OPL_0000235 obo:OPL_0000233) SubClassOf(obo:OPL_0000235 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000234)) # Class: obo:OPL_0000236 (Schistosoma mansoni adult female worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000236 "An adult female worm stage of Schistosoma mansoni that is fully developed mature female stage of Schistosoma mansoni and found in the small inferior mesenteric blood vessels surrounding the large intestine of the mammalian host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000236 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000236 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000236 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000236 "S. mansoni adult female worm stage") AnnotationAssertion(rdfs:label obo:OPL_0000236 "Schistosoma mansoni adult female worm stage") EquivalentClasses(obo:OPL_0000236 ObjectIntersectionOf(obo:OPL_0000127 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000236 obo:OPL_0000127) SubClassOf(obo:OPL_0000236 obo:OPL_0000319) # Class: obo:OPL_0000237 (adult parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000237 "A parasitic worm stage where the worm is matured and ready to pair up with another adult worm of the opposite gender, and reproduce.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000237 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000237 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000237 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000237 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000237 "adult parasitic worm stage") SubClassOf(obo:OPL_0000237 obo:OPL_0000082) # Class: obo:OPL_0000238 (Schistosoma japonicum adult female worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000238 "A Schistosoma japonicum adult worm is a fully developed mature female form of Schistosoma japonicum and capable of sexual reproduction, which lives within the gynacophoric canal of the adult male worm in the small superior mesenteric blood vessels associated with the ileo-caecal area of the intestine of the mammal host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000238 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000238 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000238 "Priti Parikh") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000238 "S. japonicum adult female worm") AnnotationAssertion(rdfs:label obo:OPL_0000238 "Schistosoma japonicum adult female worm") SubClassOf(obo:OPL_0000238 obo:OPL_0000226) SubClassOf(obo:OPL_0000238 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000224)) # Class: obo:OPL_0000239 (adult male parasitic worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000239 "An adult worm stage of a male parasitic worm.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000239 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000239 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000239 "Priti Parikh") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000239 "http://www.path.cam.ac.uk/~schisto/schistosoma/schisto_lifecycle_egg.html") AnnotationAssertion(rdfs:label obo:OPL_0000239 "adult male parasitic worm stage") SubClassOf(obo:OPL_0000239 obo:OPL_0000237) # Class: obo:OPL_0000240 (Schistosoma mansoni adult male worm) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000240 "A Schistosoma mansoni adult worm is the fully developed mature male form of Schistosoma mansoni and capable of sexual reproduction, which lives in the small inferior mesenteric blood vessels surrounding the large intestine of the mammal host and has 4-5 testes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000240 "Anna Protasio") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000240 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000240 "Flora Logan") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000240 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000240 "S. mansoni adult male worm") AnnotationAssertion(rdfs:label obo:OPL_0000240 "Schistosoma mansoni adult male worm") SubClassOf(obo:OPL_0000240 obo:OPL_0000227) SubClassOf(obo:OPL_0000240 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000230)) # Class: obo:OPL_0000241 (Plasmodium falciparum hepatic merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000241 "A Plasmodium falciparum merozoite that is produced in a hepatic schizont and released into the bloodstream of a human host. These forms invade erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000241 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000241 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000241 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000241 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000241 "P. falciparum hepatic merozoite") AnnotationAssertion(rdfs:label obo:OPL_0000241 "Plasmodium falciparum hepatic merozoite") SubClassOf(obo:OPL_0000241 obo:OPL_0000130) SubClassOf(obo:OPL_0000241 obo:OPL_0000272) SubClassOf(obo:OPL_0000241 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000246)) # Class: obo:OPL_0000242 (Plasmodium falciparum erythrocytic merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000242 "A Plasmodium falciparum merozoite that is produced in an erythrocytic schizont and released into the bloodstream of a human host. These forms invade erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000242 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000242 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000242 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000242 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000242 "P. falciparum erythrocytic merozoite") AnnotationAssertion(rdfs:label obo:OPL_0000242 "Plasmodium falciparum erythrocytic merozoite") SubClassOf(obo:OPL_0000242 obo:OPL_0000130) SubClassOf(obo:OPL_0000242 obo:OPL_0000271) SubClassOf(obo:OPL_0000242 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000245)) # Class: obo:OPL_0000243 (erythrocytic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000243 "A trophozoite stage in some protozoan parasite life cycle that occurs in erythrocytes.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000243 "definition adapted from that for P. falciparum erythrocytic trophozoite stage and parent trophozoite stage") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000243 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000243 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000243 "erythrocytic trophozoite stage") SubClassOf(obo:OPL_0000243 obo:OPL_0000057) SubClassOf(obo:OPL_0000243 ObjectSomeValuesFrom(obo:BFO_0000066 obo:CL_0000232)) # Class: obo:OPL_0000244 (Plasmodium falciparum erythrocytic trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000244 "A Plasmodium falciparum trophozoite that is found in erythrocytes. It is a feeding stage with a single nucleus.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000244 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000244 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000244 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000244 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000244 "P. falciparum erythrocytic trophozoite") AnnotationAssertion(rdfs:label obo:OPL_0000244 "Plasmodium falciparum erythrocytic trophozoite") SubClassOf(obo:OPL_0000244 obo:OPL_0000146) SubClassOf(obo:OPL_0000244 obo:OPL_0000282) SubClassOf(obo:OPL_0000244 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000207)) SubClassOf(obo:OPL_0000244 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000245 (Plasmodium falciparum erythrocytic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000245 "An erythrocytic merozoite stage in the Plasmodium falciparum lifecycle that occurs in the bloodstream of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000245 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000245 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000245 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000245 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000245 "P. falciparum erythrocytic merozoite stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000245 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000245 "Plasmodium falciparum erythrocytic merozoite stage") EquivalentClasses(obo:OPL_0000245 ObjectIntersectionOf(obo:OPL_0000248 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000245 obo:OPL_0000103) SubClassOf(obo:OPL_0000245 obo:OPL_0000293) # Class: obo:OPL_0000246 (Plasmodium falciparum hepatic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000246 "A hepatic merozoite stage in the Plasmodium falciparum lifecycle that occurs in the hepatocyte of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000246 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000246 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000246 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000246 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000246 "P. falciparum hepatic merozoite stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000246 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000246 "Plasmodium falciparum hepatic merozoite stage") EquivalentClasses(obo:OPL_0000246 ObjectIntersectionOf(obo:OPL_0000247 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000246 obo:OPL_0000103) SubClassOf(obo:OPL_0000246 obo:OPL_0000294) # Class: obo:OPL_0000247 (hepatic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000247 "A merozoite stage in the Plasmodium lifecycle that occurs in the hepatocyte of a vertebrate host.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000247 "definition adapted from that for P. falciparum hepatic merozoite stage") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000247 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000247 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000247 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000247 "hepatic merozoite stage") SubClassOf(obo:OPL_0000247 obo:OPL_0000036) SubClassOf(obo:OPL_0000247 ObjectSomeValuesFrom(obo:BFO_0000066 obo:CL_0000182)) # Class: obo:OPL_0000248 (erythrocytic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000248 "A merozoite stage in the apicomplexan lifecycle that occurrs in the bloodstream of a vertebrate host.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000248 "definition adapted from that for P. falciparum salivary erythrocytic merozoite stage and from the general merozoite definition") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000248 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000248 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000248 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000248 "erythrocytic merozoite stage") SubClassOf(obo:OPL_0000248 obo:OPL_0000036) # Class: obo:OPL_0000249 (Plasmodium falciparum gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000249 "A Plasmodium falciparum that is located either in the bloodstream of the human host or midgut of mosquito vector. Gametocytes are the precursor cells of the macro- or micro-gametes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000249 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000249 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000249 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000249 "K. Louis") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000249 "S Khan") AnnotationAssertion(rdfs:label obo:OPL_0000249 "Plasmodium falciparum gametocyte") SubClassOf(obo:OPL_0000249 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000249 obo:OPL_0000267) SubClassOf(obo:OPL_0000249 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000192)) SubClassOf(obo:OPL_0000249 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000249 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000250 (Plasmodium falciparum hepatic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000250 "A hepatic trophozoite stage in the Plasmodium falciparum life cycle that occurs in hepatocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000250 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000250 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000250 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000250 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000250 "P. falciparum hepatic trophozoite stage") AnnotationAssertion(rdfs:label obo:OPL_0000250 "Plasmodium falciparum hepatic trophozoite stage") EquivalentClasses(obo:OPL_0000250 ObjectIntersectionOf(obo:OPL_0000261 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000250 obo:OPL_0000251) SubClassOf(obo:OPL_0000250 obo:OPL_0000306) SubClassOf(obo:OPL_0000250 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) # Class: obo:OPL_0000251 (Plasmodium falciparum trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000251 "A trophozoite stage in the Plasmodium falciparum lifecycle that occurs in a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000251 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000251 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000251 "P. falciparum trophozoite stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000251 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000251 "Plasmodium falciparum trophozoite stage") EquivalentClasses(obo:OPL_0000251 ObjectIntersectionOf(obo:OPL_0000057 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000251 obo:OPL_0000165) SubClassOf(obo:OPL_0000251 obo:OPL_0000303) SubClassOf(obo:OPL_0000251 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) SubClassOf(obo:OPL_0000251 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000252 (Plasmodium falciparum oocyst-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000252 "A sporozoite stage in the Plasmodium falciparum lifecycle that occurs in the hemocoel and the salivary glands of the mosquito. Sporozoites invade hepatocytes in the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000252 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000252 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000252 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000252 "S. Khan") AnnotationAssertion(rdfs:label obo:OPL_0000252 "Plasmodium falciparum oocyst-derived sporozoite stage") EquivalentClasses(obo:OPL_0000252 ObjectIntersectionOf(obo:OPL_0000256 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000252 obo:OPL_0000115) SubClassOf(obo:OPL_0000252 obo:OPL_0000301) # Class: obo:OPL_0000253 (salivary gland-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000253 "A sporozoite stage in the Plasmodium lifecycle that occurs in the hemocoel and the salivary glands of the mosquito. Sporozoites invade hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000253 "definition adapted from that for P. falciparum salivary gland derived sporozoite stage") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000253 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000253 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000253 "salivary gland-derived sporozoite stage") SubClassOf(obo:OPL_0000253 obo:OPL_0000152) SubClassOf(obo:OPL_0000253 ObjectSomeValuesFrom(obo:BFO_0000066 obo:UBERON_0001044)) # Class: obo:OPL_0000254 (Plasmodium falciparum salivary gland-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000254 "A salivary gland-derived sporozoite stage in the Plasmodium falciparum lifecycle that occurs in the hemocoel and the salivary glands of the mosquito. Sporozoites invade hepatocytes in the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000254 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000254 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000254 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000254 "S. Khan") AnnotationAssertion(rdfs:label obo:OPL_0000254 "Plasmodium falciparum salivary gland-derived sporozoite stage") EquivalentClasses(obo:OPL_0000254 ObjectIntersectionOf(obo:OPL_0000253 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000254 obo:OPL_0000115) SubClassOf(obo:OPL_0000254 obo:OPL_0000302) # Class: obo:OPL_0000255 (Plasmodium falciparum salivary gland-derived sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000255 "A Plasmodium falciparum sporozoite that is formed in the oocyst. It migrates to and resides in the salivary glands of the mosquito vector. Sporozoites invade hepatocytes in a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000255 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000255 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000255 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000255 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000255 "P. falciparum salivary gland-derived sporozoite") AnnotationAssertion(rdfs:label obo:OPL_0000255 "Plasmodium falciparum salivary gland-derived sporozoite") SubClassOf(obo:OPL_0000255 obo:OPL_0000280) SubClassOf(obo:OPL_0000255 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000254)) # Class: obo:OPL_0000256 (oocyst-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000256 "A sporozoite stage in some parasite lifecycle that occurs in the hemocoel and the salivary glands of the mosquito. Sporozoites invade hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000256 "definition adapted from that for P. falciparum oocyte derived sporozoite stage") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000256 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000256 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000256 "oocyst-derived sporozoite stage") SubClassOf(obo:OPL_0000256 obo:OPL_0000152) # Class: obo:OPL_0000257 (Plasmodium falciparum hepatic trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000257 "A Plasmodium falciparum trophozoite that is found in hepatocytes of a human host. It is a feeding stage with a single nucleus") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000257 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000257 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000257 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000257 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000257 "P. falciparum hepatic trophozoite") AnnotationAssertion(rdfs:label obo:OPL_0000257 "Plasmodium falciparum hepatic trophozoite") SubClassOf(obo:OPL_0000257 obo:OPL_0000146) SubClassOf(obo:OPL_0000257 obo:OPL_0000284) SubClassOf(obo:OPL_0000257 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000250)) SubClassOf(obo:OPL_0000257 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) # Class: obo:OPL_0000258 (Plasmodium falciparum gamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000258 "A Plasmodium falciparum that is found in midgut of mosquito vector. There are two forms of gametes: micro- and macrogametocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000258 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000258 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000258 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000258 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000258 "P. falciparum gamete") AnnotationAssertion(rdfs:label obo:OPL_0000258 "Plasmodium falciparum gamete") SubClassOf(obo:OPL_0000258 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000258 obo:OPL_0000264) SubClassOf(obo:OPL_0000258 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000262)) SubClassOf(obo:OPL_0000258 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000259 (Plasmodium falciparum oocyst-derived sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000259 "A Plasmodium falciparum sporozoite that is found in the infected hepatocytes of a human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000259 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000259 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000259 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000259 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000259 "P. falciparum oocyst-derived sporozoite") AnnotationAssertion(rdfs:label obo:OPL_0000259 "Plasmodium falciparum oocyst-derived sporozoite") SubClassOf(obo:OPL_0000259 obo:NCBITaxon_5833) SubClassOf(obo:OPL_0000259 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000252)) # Class: obo:OPL_0000260 (gamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000260 "A life cycle stage of some parasites that develop into mature sexual cells.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000260 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000260 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000260 "gamete stage") SubClassOf(obo:OPL_0000260 obo:UBERON_0000105) # Class: obo:OPL_0000261 (hepatic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000261 "A trophozoite stage in some protozoan parasite life cycle that occurs in hepatocytes.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000261 "definition adapted from that for P. falciparum hepatic trophozoite stage and from parent trophozoite stage") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000261 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000261 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000261 "hepatic trophozoite stage") SubClassOf(obo:OPL_0000261 obo:OPL_0000057) SubClassOf(obo:OPL_0000261 ObjectSomeValuesFrom(obo:BFO_0000066 obo:CL_0000182)) # Class: obo:OPL_0000262 (Plasmodium falciparum gamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000262 "A gamete stage in the Plasmodium falciparum lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000262 "C. Janse") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000262 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000262 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000262 "S. Khan") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000262 "P. falciparum gamete stage") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000262 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000262 "Plasmodium falciparum gamete stage") EquivalentClasses(obo:OPL_0000262 ObjectIntersectionOf(obo:OPL_0000260 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5833))) SubClassOf(obo:OPL_0000262 obo:OPL_0000165) SubClassOf(obo:OPL_0000262 obo:OPL_0000286) SubClassOf(obo:OPL_0000262 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000263 (asexual lifecycle in host red blood cell stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000263 "A parasite lifecycle stage that occurs as a result of asexual replication in the red blood cells of the host organism. For Plasmodium species these stages can include merozoites, trophozoites, and schizonts.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000263 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000263 "asexual blood stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000263 "VEuPathDB") AnnotationAssertion(rdfs:label obo:OPL_0000263 "asexual lifecycle in host red blood cell stage") SubClassOf(obo:OPL_0000263 obo:OPL_0000181) SubClassOf(obo:OPL_0000263 ObjectSomeValuesFrom(obo:BFO_0000066 obo:CL_0000232)) SubClassOf(obo:OPL_0000263 ObjectSomeValuesFrom(obo:RO_0002162 obo:OPL_0000232)) # Class: obo:OPL_0000264 (Plasmodium gamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000264 "A Plasmodium that is found in the midgut of a mosquito vector during gamete lifecycle stage. There are two forms of gametes: micro- and macrogametocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000264 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000264 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000264 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000264 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000264 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000264 "Plasmodium gamete") EquivalentClasses(obo:OPL_0000264 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000260))) SubClassOf(obo:OPL_0000264 obo:NCBITaxon_5820) # Class: obo:OPL_0000265 (Plasmodium macrogamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000265 "A Plasmodium gamete that is in a matured form of the macrogametocyte and found in the midgut of a mosquito vector. The macrogamete is fertilized by the microgamete, forming the zygote.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000265 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000265 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000265 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000265 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000265 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000265 "Plasmodium macrogamete") EquivalentClasses(obo:OPL_0000265 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000085))) SubClassOf(obo:OPL_0000265 obo:OPL_0000264) SubClassOf(obo:OPL_0000265 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000266 (Plasmodium microgamete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000266 "A Plasmodium gamete that is in a matured form of exflagellated microgametocyte and found in the midgut of a mosquito vector. The microgamete fertilises the macrogamete, forming the zygote.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000266 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000266 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000266 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000266 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000266 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000266 "Plasmodium microgamete") EquivalentClasses(obo:OPL_0000266 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000026))) SubClassOf(obo:OPL_0000266 obo:OPL_0000264) SubClassOf(obo:OPL_0000266 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000267 (Plasmodium gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000267 "A Plasmodium that is located either in the bloodstream of the vertebrate host or midgut of mosquito vector during gametocyte stage. Gametocytes are the precursor cells of the macro- or microgametes") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000267 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000267 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000267 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000267 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000267 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000267 "Plasmodium gametocyte") EquivalentClasses(obo:OPL_0000267 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000150))) SubClassOf(obo:OPL_0000267 obo:NCBITaxon_5820) # Class: obo:OPL_0000268 (Plasmodium macrogametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000268 "A Plasmodium gametocyte that is a female gametocyte of Plasmodium and found either in the bloodstream of the vertebrate host or midgut of mosquito vector. The macrogametocyte is a precursor of the macrogamete.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000268 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000268 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000268 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000268 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000268 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000268 "Plasmodium macrogametocyte") EquivalentClasses(obo:OPL_0000268 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000028))) SubClassOf(obo:OPL_0000268 obo:OPL_0000267) SubClassOf(obo:OPL_0000268 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000268 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000311)) # Class: obo:OPL_0000269 (Plasmodium microgametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000269 "A Plasmodium gametocyte that is a male gametocyte of Plasmodium and found either in the bloodstream of a vertebrate host or midgut of a mosquito vector. The microgametocyte is a precursor cell of the microgamete") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000269 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000269 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000269 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000269 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000269 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000269 "Plasmodium microgametocyte") EquivalentClasses(obo:OPL_0000269 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000143))) SubClassOf(obo:OPL_0000269 obo:OPL_0000267) SubClassOf(obo:OPL_0000269 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000269 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000311)) # Class: obo:OPL_0000270 (Plasmodium merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000270 "A Plasmodium that is during merozoite lifecycle stage, occurs in the bloodstream of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000270 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000270 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000270 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000270 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000270 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000270 "Plasmodium merozoite") EquivalentClasses(obo:OPL_0000270 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000036))) SubClassOf(obo:OPL_0000270 obo:NCBITaxon_5820) # Class: obo:OPL_0000271 (Plasmodium erythrocytic merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000271 "A Plasmodium merozoite that is produced in an erythrocytic schizont and released into the bloodstream of a vertebrate host. These forms invade erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000271 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000271 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000271 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000271 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000271 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000271 "Plasmodium erythrocytic merozoite") EquivalentClasses(obo:OPL_0000271 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000248))) SubClassOf(obo:OPL_0000271 obo:OPL_0000270) SubClassOf(obo:OPL_0000271 ObjectSomeValuesFrom(obo:BFO_0000050 obo:MONDO_0005136)) SubClassOf(obo:OPL_0000271 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) # Class: obo:OPL_0000272 (Plasmodium hepatic merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000272 "A Plasmodium merozoite that is produced in a hepatic schizont and released into the bloodstream of a vertebrate host. These forms invade erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000272 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000272 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000272 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000272 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000272 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000272 "Plasmodium hepatic merozoite") EquivalentClasses(obo:OPL_0000272 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000247))) SubClassOf(obo:OPL_0000272 obo:OPL_0000270) SubClassOf(obo:OPL_0000272 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) # Class: obo:OPL_0000273 (Plasmodium oocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000273 "A Plasmodium that is formed after traversal of the midgut wall by the ookinete stage, on the hemocoel side of the midgut wall of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000273 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000273 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000273 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000273 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000273 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000273 "Plasmodium oocyst") EquivalentClasses(obo:OPL_0000273 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000073))) SubClassOf(obo:OPL_0000273 obo:NCBITaxon_5820) SubClassOf(obo:OPL_0000273 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000274 (Plasmodium ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000274 "A Plasmodium that is a 'banana-shaped' form originates from the round zygote. The ookinete is found in the midgut of a mosquito vector and traverses the midgut wall of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000274 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000274 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000274 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000274 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000274 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000274 "Plasmodium ookinete") EquivalentClasses(obo:OPL_0000274 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000153))) SubClassOf(obo:OPL_0000274 obo:NCBITaxon_5820) SubClassOf(obo:OPL_0000274 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000275 (Plasmodium schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000275 "A Plasmodium that is a form divides through schizogony. Depending on its location, it is either called hepatic or erythrocytic schizont. The schizont is a dividing stage with 2 or more nuclei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000275 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000275 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000275 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000275 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000275 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000275 "Plasmodium schizont") EquivalentClasses(obo:OPL_0000275 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000084))) SubClassOf(obo:OPL_0000275 obo:NCBITaxon_5820) # Class: obo:OPL_0000276 (Plasmodium erythrocytic schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000276 "A Plasmodium schizont that is found in infected erythrocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000276 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000276 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000276 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000276 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000276 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000276 "Plasmodium erythrocytic schizont") EquivalentClasses(obo:OPL_0000276 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000078))) SubClassOf(obo:OPL_0000276 obo:OPL_0000275) SubClassOf(obo:OPL_0000276 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000311)) # Class: obo:OPL_0000277 (Plasmodium hepatic schizont) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000277 "A Plasmodium schizont that is found in infected hepatocytes (i.e. liver cells) of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000277 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000277 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000277 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000277 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000277 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000277 "Plasmodium hepatic schizont") EquivalentClasses(obo:OPL_0000277 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000059))) SubClassOf(obo:OPL_0000277 obo:OPL_0000275) SubClassOf(obo:OPL_0000277 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000312)) # Class: obo:OPL_0000278 (Plasmodium sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000278 "A Plasmodium that is formed in the oocyst and migrates to and reside in the salivary glands of the mosquito vector. A distinction is made between oocyst-derived and salivary gland-derived sporozoites. Sporozoites invade hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000278 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000278 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000278 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000278 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000278 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000278 "Plasmodium sporozoite") EquivalentClasses(obo:OPL_0000278 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000152))) SubClassOf(obo:OPL_0000278 obo:NCBITaxon_5820) SubClassOf(obo:OPL_0000278 ObjectSomeValuesFrom(obo:BFO_0000050 obo:MONDO_0005136)) SubClassOf(obo:OPL_0000278 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000121)) SubClassOf(obo:OPL_0000278 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000310)) SubClassOf(obo:OPL_0000278 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000312)) # Class: obo:OPL_0000279 (Plasmodium oocyst-derived sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000279 "A Plasmodium sporozoite that is found in the infected hepatocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000279 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000279 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000279 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000279 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000279 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000279 "Plasmodium oocyst-derived sporozoite") EquivalentClasses(obo:OPL_0000279 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000256))) SubClassOf(obo:OPL_0000279 obo:OPL_0000278) # Class: obo:OPL_0000280 (Plasmodium salivary gland-derived sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000280 "A Plasmodium sporozoite that is found in the salivary glands of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000280 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000280 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000280 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000280 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000280 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000280 "Plasmodium salivary gland-derived sporozoite") EquivalentClasses(obo:OPL_0000280 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000253))) SubClassOf(obo:OPL_0000280 obo:OPL_0000278) # Class: obo:OPL_0000281 (Plasmodium trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000281 "A Plasmodium that is a feeding form which has a single nucleus during the trophozoite stage. Depending on its location, it is either called hepatic or erythrocytic trophozoite.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000281 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000281 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000281 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000281 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000281 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000281 "Plasmodium trophozoite") EquivalentClasses(obo:OPL_0000281 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000057))) SubClassOf(obo:OPL_0000281 obo:NCBITaxon_5820) SubClassOf(obo:OPL_0000281 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) SubClassOf(obo:OPL_0000281 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000311)) SubClassOf(obo:OPL_0000281 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000312)) # Class: obo:OPL_0000282 (Plasmodium erythrocytic trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000282 "A Plasmodium trophozoite that is found in erythrocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000282 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000282 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000282 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000282 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000282 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000282 "Plasmodium erythrocytic trophozoite") EquivalentClasses(obo:OPL_0000282 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000243))) SubClassOf(obo:OPL_0000282 obo:OPL_0000281) SubClassOf(obo:OPL_0000282 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000311)) # Class: obo:OPL_0000283 (Plasmodium erythrocytic ring trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000283 "A Plasmodium erythrocytic trophozoite that has a typical 'ring-like' appearance. Ring-form trophozoites of Plasmodium are often thin and delicate, measuring on average 1/5 the diameter of the red blood cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000283 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000283 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000283 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000283 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000283 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000283 "Plasmodium erythrocytic ring trophozoite") EquivalentClasses(obo:OPL_0000283 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000140))) SubClassOf(obo:OPL_0000283 obo:OPL_0000282) # Class: obo:OPL_0000284 (Plasmodium hepatic trophozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000284 "A Plasmodium trophozoite that is found in hepatocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000284 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000284 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000284 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000284 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000284 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000284 "Plasmodium hepatic trophozoite") EquivalentClasses(obo:OPL_0000284 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000261))) SubClassOf(obo:OPL_0000284 obo:OPL_0000281) SubClassOf(obo:OPL_0000284 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000312)) # Class: obo:OPL_0000285 (Plasmodium zygote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000285 "A Plasmodium that is formed after fertilization of the macrogamete by a microgamete in the midgut of the mosquito vector. This round form is the only diploid stage in the Plasmodium life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000285 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000285 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000285 "Ulrike Boehme") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000285 "https://github.com/OPL-ontology/OPL/issues/2") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000285 "GeneDB") AnnotationAssertion(rdfs:label obo:OPL_0000285 "Plasmodium zygote") EquivalentClasses(obo:OPL_0000285 ObjectIntersectionOf(obo:NCBITaxon_5820 ObjectSomeValuesFrom(obo:RO_0000056 obo:UBERON_0000106))) SubClassOf(obo:OPL_0000285 obo:NCBITaxon_5820) SubClassOf(obo:OPL_0000285 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000286 (Plasmodium gamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000286 "A gamete stage in the Plasmodium lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000286 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000286 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000286 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000286 "Plasmodium gamete stage") EquivalentClasses(obo:OPL_0000286 ObjectIntersectionOf(obo:OPL_0000260 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000286 obo:OPL_0000181) SubClassOf(obo:OPL_0000286 obo:OPL_0000260) # Class: obo:OPL_0000287 (Plasmodium macrogamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000287 "A macrogamete stage in the Plasmodium lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000287 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000287 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000287 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000287 "Plasmodium macrogamete stage") EquivalentClasses(obo:OPL_0000287 ObjectIntersectionOf(obo:OPL_0000085 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000287 obo:OPL_0000085) SubClassOf(obo:OPL_0000287 obo:OPL_0000286) SubClassOf(obo:OPL_0000287 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000288 (Plasmodium microgamete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000288 "A microgamete stage in the Plasmodium lifecycle that occurs in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000288 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000288 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000288 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000288 "Plasmodium microgamete stage") EquivalentClasses(obo:OPL_0000288 ObjectIntersectionOf(obo:OPL_0000026 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000288 obo:OPL_0000026) SubClassOf(obo:OPL_0000288 obo:OPL_0000286) SubClassOf(obo:OPL_0000288 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000289 (Plasmodium gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000289 "A gametocyte stage in the lifecycle of Plasmodium.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000289 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000289 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000289 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000289 "Plasmodium gametocyte stage") EquivalentClasses(obo:OPL_0000289 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000289 obo:OPL_0000150) SubClassOf(obo:OPL_0000289 obo:OPL_0000181) # Class: obo:OPL_0000290 (Plasmodium macrogametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000290 "A macrogametocyte stage in the Plasmodium lifecycle that occurs either in the bloodstream of a vertebrate host or the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000290 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000290 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000290 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000290 "Plasmodium macrogametocyte stage") EquivalentClasses(obo:OPL_0000290 ObjectIntersectionOf(obo:OPL_0000028 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000290 obo:OPL_0000028) SubClassOf(obo:OPL_0000290 obo:OPL_0000289) SubClassOf(obo:OPL_0000290 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000290 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000311)) # Class: obo:OPL_0000291 (Plasmodium microgametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000291 "A microgametocyte stage in the Plasmodium lifecycle that occurs either in the bloodstream of a vertebrate host or the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000291 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000291 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000291 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000291 "Plasmodium microgametocyte stage") EquivalentClasses(obo:OPL_0000291 ObjectIntersectionOf(obo:OPL_0000143 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000291 obo:OPL_0000143) SubClassOf(obo:OPL_0000291 obo:OPL_0000289) SubClassOf(obo:OPL_0000291 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000291 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000311)) # Class: obo:OPL_0000292 (Plasmodium merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000292 "A merozoite stage in the Plasmodium lifecycle that occurs in the bloodstream or hepatocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000292 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000292 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000292 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000292 "Plasmodium merozoite stage") EquivalentClasses(obo:OPL_0000292 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000292 obo:OPL_0000036) # Class: obo:OPL_0000293 (Plasmodium erythrocytic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000293 "An erythrocytic merozoite stage in the Plasmodium lifecycle that occurs in the bloodstream of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000293 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000293 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000293 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000293 "Plasmodium erythrocytic merozoite stage") EquivalentClasses(obo:OPL_0000293 ObjectIntersectionOf(obo:OPL_0000248 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000293 obo:OPL_0000248) SubClassOf(obo:OPL_0000293 obo:OPL_0000292) # Class: obo:OPL_0000294 (Plasmodium hepatic merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000294 "A hepatic merozoite stage in the Plasmodium lifecycle that occurs in the hepatocyte of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000294 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000294 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000294 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000294 "Plasmodium hepatic merozoite stage") EquivalentClasses(obo:OPL_0000294 ObjectIntersectionOf(obo:OPL_0000247 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000294 obo:OPL_0000247) SubClassOf(obo:OPL_0000294 obo:OPL_0000292) # Class: obo:OPL_0000295 (Plasmodium oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000295 "An oocyst stage in the Plasmodium lifecycle that occurs on the hemocoel side of the midgut of a mosquito vector. During this stage Plasmodium ookinete invades and escapes midgut wall of mosquito and embed itself onto the exterior of the gut membrane and develop encysted zygote, called oocyst.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000295 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000295 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000295 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000295 "Plasmodium oocyst stage") EquivalentClasses(obo:OPL_0000295 ObjectIntersectionOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000295 obo:OPL_0000073) SubClassOf(obo:OPL_0000295 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000296 (Plasmodium ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000296 "An ookinete stage in the Plasmodium lifecycle that occurs in the midgut of a mosquito vector and on the outside of the midgut.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000296 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000296 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000296 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000296 "Plasmodium ookinete stage") EquivalentClasses(obo:OPL_0000296 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000296 obo:OPL_0000153) SubClassOf(obo:OPL_0000296 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000297 (Plasmodium schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000297 "A schizont stage in the Plasmodium lifecycle that occurs in erythrocytes or in hepatocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000297 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000297 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000297 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000297 "Plasmodium schizont stage") EquivalentClasses(obo:OPL_0000297 ObjectIntersectionOf(obo:OPL_0000084 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000297 obo:OPL_0000084) # Class: obo:OPL_0000298 (Plasmodium erythrocytic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000298 "An erythrocytic schizont stage in the Plasmodium lifecycle that occurs in the infected erythrocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000298 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000298 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000298 "Plasmodium erythrocytic schizont stage") EquivalentClasses(obo:OPL_0000298 ObjectIntersectionOf(obo:OPL_0000078 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000298 obo:OPL_0000078) SubClassOf(obo:OPL_0000298 obo:OPL_0000297) SubClassOf(obo:OPL_0000298 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000311)) # Class: obo:OPL_0000299 (Plasmodium hepatic schizont stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000299 "A hepatic schizont stage in the Plasmodium lifecycle that occurs in the infected hepatocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000299 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000299 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000299 "Plasmodium hepatic schizont stage") EquivalentClasses(obo:OPL_0000299 ObjectIntersectionOf(obo:OPL_0000059 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000299 obo:OPL_0000059) SubClassOf(obo:OPL_0000299 obo:OPL_0000297) SubClassOf(obo:OPL_0000299 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000312)) # Class: obo:OPL_0000300 (Plasmodium sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000300 "A sporozoite stage in the Plasmodium lifecycle that occurs in the salivary glands of the mosquito and invades hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000300 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000300 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000300 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000300 "Plasmodium sporozoite stage") EquivalentClasses(obo:OPL_0000300 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000300 obo:OPL_0000152) SubClassOf(obo:OPL_0000300 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000121)) SubClassOf(obo:OPL_0000300 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000310)) SubClassOf(obo:OPL_0000300 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000312)) # Class: obo:OPL_0000301 (Plasmodium oocyst-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000301 "A sporozoite stage in the Plasmodium lifecycle that develops in oocyst of the mosquito midgut.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000301 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000301 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000301 "Omar harb") AnnotationAssertion(rdfs:label obo:OPL_0000301 "Plasmodium oocyst-derived sporozoite stage") EquivalentClasses(obo:OPL_0000301 ObjectIntersectionOf(obo:OPL_0000256 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000301 obo:OPL_0000256) SubClassOf(obo:OPL_0000301 obo:OPL_0000300) # Class: obo:OPL_0000302 (Plasmodium salivary gland-derived sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000302 "A salivary gland-derived sporozoite stage in the Plasmodium lifecycle that occurs in the salivary glands of the mosquito and invades hepatocytes in the vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000302 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000302 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000302 "Omar harb") AnnotationAssertion(rdfs:label obo:OPL_0000302 "Plasmodium salivary gland-derived sporozoite stage") EquivalentClasses(obo:OPL_0000302 ObjectIntersectionOf(obo:OPL_0000253 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000302 obo:OPL_0000253) SubClassOf(obo:OPL_0000302 obo:OPL_0000300) # Class: obo:OPL_0000303 (Plasmodium trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000303 "A trophozoite stage in the Plasmodium lifecycle that occurs in a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000303 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000303 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000303 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000303 "Plasmodium trophozoite stage") EquivalentClasses(obo:OPL_0000303 ObjectIntersectionOf(obo:OPL_0000057 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000303 obo:OPL_0000057) SubClassOf(obo:OPL_0000303 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000311)) SubClassOf(obo:OPL_0000303 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000312)) # Class: obo:OPL_0000304 (Plasmodium erythrocytic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000304 "An erythrocytic trophozoite stage in the Plasmodium life cycle that occurs in erythrocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000304 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000304 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000304 "Plasmodium erythrocytic trophozoite stage") EquivalentClasses(obo:OPL_0000304 ObjectIntersectionOf(obo:OPL_0000243 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000304 obo:OPL_0000243) SubClassOf(obo:OPL_0000304 obo:OPL_0000303) SubClassOf(obo:OPL_0000304 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000311)) # Class: obo:OPL_0000305 (Plasmodium erythrocytic ring trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000305 "An erythrocytic ring trophozoite stage in the Plasmodium life cycle that occurs in erythrocytes of a vertebrate host. During this stage some Plasmodium merozoites undergo asexual reproduction cycle in erythrocytes and form young trophozoites that are referred to as \"ring form\" due to their morphology.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000305 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000305 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000305 "Plasmodium erythrocytic ring trophozoite stage") EquivalentClasses(obo:OPL_0000305 ObjectIntersectionOf(obo:OPL_0000140 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000305 obo:OPL_0000140) SubClassOf(obo:OPL_0000305 obo:OPL_0000304) # Class: obo:OPL_0000306 (Plasmodium hepatic trophozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000306 "A hepatic trophozoite stage in the Plasmodium life cycle that occurs in hepatocytes of a vertebrate host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000306 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000306 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000306 "Plasmodium hepatic trophozoite stage") EquivalentClasses(obo:OPL_0000306 ObjectIntersectionOf(obo:OPL_0000261 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000306 obo:OPL_0000261) SubClassOf(obo:OPL_0000306 obo:OPL_0000303) SubClassOf(obo:OPL_0000306 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000312)) # Class: obo:OPL_0000307 (Plasmodium zygote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000307 "A zygote stage in the Plasmodium lifecycle that occurs in the midgut of the mosquito vector where a microgamete and a macrogamete fertilizes each other to produce a diploid cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000307 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000307 "Jie Zheng") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000307 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000307 "Plasmodium zygote stage") EquivalentClasses(obo:OPL_0000307 ObjectIntersectionOf(obo:UBERON_0000106 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5820))) SubClassOf(obo:OPL_0000307 obo:OPL_0000181) SubClassOf(obo:OPL_0000307 obo:UBERON_0000106) SubClassOf(obo:OPL_0000307 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000308 (Schistosoma haematobium adult worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000308 "An adult worm stage in the Schistosoma haematobium lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000308 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000308 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000308 "Schistosoma haematobium adult worm stage") EquivalentClasses(obo:OPL_0000308 ObjectIntersectionOf(obo:OPL_0000237 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6185))) SubClassOf(obo:OPL_0000308 obo:OPL_0000091) SubClassOf(obo:OPL_0000308 obo:OPL_0000237) # Class: obo:OPL_0000309 (Schistosoma japonicum adult worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000309 "An adult worm stage in the Schistosoma japonicum lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000309 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000309 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000309 "Schistosoma japonicum adult worm stage") EquivalentClasses(obo:OPL_0000309 ObjectIntersectionOf(obo:OPL_0000237 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6182))) SubClassOf(obo:OPL_0000309 obo:OPL_0000071) SubClassOf(obo:OPL_0000309 obo:OPL_0000237) # Class: obo:OPL_0000310 (Vertebrate blood) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000310 "Blood that is part of or originated from a vertebrate.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000310 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000310 "OPL") AnnotationAssertion(rdfs:label obo:OPL_0000310 "Vertebrate blood") EquivalentClasses(obo:OPL_0000310 ObjectIntersectionOf(obo:UBERON_0000178 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7742))) SubClassOf(obo:OPL_0000310 obo:UBERON_0000178) # Class: obo:OPL_0000311 (Vertebrate erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000311 "An erythrocyte that is a part of or originated from a vertebrate.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000311 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000311 "OPL") AnnotationAssertion(rdfs:label obo:OPL_0000311 "Vertebrate erythrocyte") EquivalentClasses(obo:OPL_0000311 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7742))) SubClassOf(obo:OPL_0000311 obo:CL_0000232) # Class: obo:OPL_0000312 (Vertebrate hepatocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000312 "A hepatocyte that is a part of or originated from a vertebrate.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000312 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000312 "OPL") AnnotationAssertion(rdfs:label obo:OPL_0000312 "Vertebrate hepatocyte") EquivalentClasses(obo:OPL_0000312 ObjectIntersectionOf(obo:CL_0000182 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_7742))) SubClassOf(obo:OPL_0000312 obo:CL_0000182) # Class: obo:OPL_0000313 (Mammalia cerebrospinal fluid) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000313 "Cerebrospinal fluid that is a part of or originated from a mammal.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000313 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000313 "Mammalia cerebrospinal fluid") EquivalentClasses(obo:OPL_0000313 ObjectIntersectionOf(obo:UBERON_0001359 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000313 obo:UBERON_0001359) # Class: obo:OPL_0000314 (Mammalia skin) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000314 "A skin that is a part of or originated from a mammalian body.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000314 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000314 "Mammalia skin") EquivalentClasses(obo:OPL_0000314 ObjectIntersectionOf(obo:UBERON_0002097 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000314 obo:UBERON_0002097) # Class: obo:OPL_0000315 (Mammalia liver) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000315 "A liver that is a part of or originated from a mammal (Mammalia).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000315 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000315 "Mammalia liver") EquivalentClasses(obo:OPL_0000315 ObjectIntersectionOf(obo:UBERON_0002107 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000315 obo:UBERON_0002107) # Class: obo:OPL_0000316 (Mammalia lung) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000316 "A lung that is a part of or originated from a mammal (Mammalia).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000316 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000316 "Mammalia lung") EquivalentClasses(obo:OPL_0000316 ObjectIntersectionOf(obo:UBERON_0002048 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000316 obo:UBERON_0002048) # Class: obo:OPL_0000317 (Mammalia mesenteric vein) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000317 "A mesenteric vein that is a part of or originated from a mammal (Mammalia).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000317 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000317 "Mammalia mesenteric vein") EquivalentClasses(obo:OPL_0000317 ObjectIntersectionOf(obo:UBERON_0005617 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000317 obo:UBERON_0005617) # Class: obo:OPL_0000318 (Mammalia intestine) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000318 "An intestine that is a part of or originated from a mammal (Mammalia).") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000318 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000318 "Mammalia intestine") EquivalentClasses(obo:OPL_0000318 ObjectIntersectionOf(obo:UBERON_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000318 obo:UBERON_0000160) # Class: obo:OPL_0000319 (Schistosoma mansoni adult worm stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000319 "An adult worm stage in the Schistosoma mansoni lifecycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000319 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000319 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000319 "Schistosoma mansoni adult worm stage") EquivalentClasses(obo:OPL_0000319 ObjectIntersectionOf(obo:OPL_0000237 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_6183))) SubClassOf(obo:OPL_0000319 obo:OPL_0000211) SubClassOf(obo:OPL_0000319 obo:OPL_0000237) # Class: obo:OPL_0000320 (Mammalia blood) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000320 "Blood that is part of or originated from a mammalia.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000320 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000320 "Mammalia blood") EquivalentClasses(obo:OPL_0000320 ObjectIntersectionOf(obo:UBERON_0000178 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000320 obo:OPL_0000310) # Class: obo:OPL_0000321 (Mammalia macrophage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000321 "A macrophage that is a part of or originated from a mammalia.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000321 "Jie Zheng") AnnotationAssertion(rdfs:label obo:OPL_0000321 "Mammalia macrophage") EquivalentClasses(obo:OPL_0000321 ObjectIntersectionOf(obo:CL_0000235 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000321 obo:CL_0000235) # Class: obo:OPL_0000322 (Trypanosomatida metacyclic stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000322 "A parasite lifecycle stage of trypanosomatidae in which the organism is infectious and does not multiply.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000322 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000322 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000322 "metacyclic stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000322 "https://microbewiki.kenyon.edu/index.php/Trypanosome_Life_Cycle") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000322 "https://web.stanford.edu/group/parasites/ParaSites2003/Leishmania/Leish%20Biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000322 "https://github.com/OPL-ontology/OPL/issues/9") AnnotationAssertion(rdfs:label obo:OPL_0000322 "Trypanosomatida metacyclic stage") EquivalentClasses(obo:OPL_0000322 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:BFO_0000055 obo:IDO_0000404) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5654))) SubClassOf(obo:OPL_0000322 obo:OPL_0000181) # Class: obo:OPL_0000323 (Trypanosomatida procyclic stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000323 "A parasite lifecycle stage of trypanosomatidae in which the organism is in dividing form and it occurs in fly vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000323 "Achchuthan Shanmugasundram") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000323 "Chris Stoeckert") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000323 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000323 "procyclic stage") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000323 "VEuPathDB") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000323 "https://github.com/OPL-ontology/OPL/issues/10") AnnotationAssertion(rdfs:label obo:OPL_0000323 "Trypanosomatida procyclic stage") EquivalentClasses(obo:OPL_0000323 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0051301) ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5654))) SubClassOf(obo:OPL_0000323 obo:OPL_0000181) SubClassOf(obo:OPL_0000323 ObjectSomeValuesFrom(obo:BFO_0000066 ObjectUnionOf(obo:OPL_0000194 obo:OPL_0000215))) # Class: obo:OPL_0000324 (bradyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000324 "A parasite life cycle stage found in the tissue cyst which replicates slowly within a parasitophorous vacuole within the host cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000324 "Jie Zheng") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000324 "https://orcid.org/0000-0002-2825-0621 Paola Roncaglia") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000324 "bradyzoite") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000324 "cystozoite") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000324 "https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/tachyzoite") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000324 "https://github.com/OPL-ontology/OPL/issues/19") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000324 "https://github.com/obophenotype/cell-ontology/issues/270") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000324 "Cell Ontology") AnnotationAssertion(rdfs:label obo:OPL_0000324 "bradyzoite stage") SubClassOf(obo:OPL_0000324 obo:OPL_0000181) # Class: obo:OPL_0000325 (tachyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000325 "A parasite lifecycle stage that parasite replicates rapidly within the host cell.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000325 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000325 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000325 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744739/") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000325 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000325 "tachyzoite stage") SubClassOf(obo:OPL_0000325 obo:OPL_0000181) # Class: obo:OPL_0000326 (Plasmodium vivax ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000326 "A Plasmodium vivax that is found in the midgut of a mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000326 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000326 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000326 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000326 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000326 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000326 "Plasmodium vivax ookinete") SubClassOf(obo:OPL_0000326 obo:NCBITaxon_5855) SubClassOf(obo:OPL_0000326 obo:OPL_0000274) SubClassOf(obo:OPL_0000326 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000347)) SubClassOf(obo:OPL_0000326 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000327 (Plasmodium vivax sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000327 "A Plasmodium vivax is formed in the oocyst. It migrates to and resides in the gut of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000327 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000327 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000327 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000327 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000327 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000327 "Plasmodium vivax sporozoite") SubClassOf(obo:OPL_0000327 obo:NCBITaxon_5855) SubClassOf(obo:OPL_0000327 obo:OPL_0000278) SubClassOf(obo:OPL_0000327 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000348)) SubClassOf(obo:OPL_0000327 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) SubClassOf(obo:OPL_0000327 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000117)) SubClassOf(obo:OPL_0000327 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000121)) # Class: obo:OPL_0000328 (Plasmodium vivax merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000328 "A Plasmodium vivax that is found in the bloodstream of the human host and invades erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000328 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000328 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000328 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000328 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000328 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000328 "Plasmodium vivax merozoite") SubClassOf(obo:OPL_0000328 obo:NCBITaxon_5855) SubClassOf(obo:OPL_0000328 obo:OPL_0000270) SubClassOf(obo:OPL_0000328 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000349)) SubClassOf(obo:OPL_0000328 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) SubClassOf(obo:OPL_0000328 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000329 (Plasmodium vivax gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000329 "A Plasmodium vivax that is located in the bloodstream of the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000329 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000329 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000329 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000329 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000329 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000329 "Plasmodium vivax gametocyte") SubClassOf(obo:OPL_0000329 obo:NCBITaxon_5855) SubClassOf(obo:OPL_0000329 obo:OPL_0000267) SubClassOf(obo:OPL_0000329 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000350)) SubClassOf(obo:OPL_0000329 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) SubClassOf(obo:OPL_0000329 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000330 (Plasmodium berghei sporazoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000330 "A Plasmodium berghei is formed in the oocyst. It migrates to and resides in the gut of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000330 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000330 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000330 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000330 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000330 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000330 "Plasmodium berghei sporazoite") SubClassOf(obo:OPL_0000330 obo:NCBITaxon_5821) SubClassOf(obo:OPL_0000330 obo:OPL_0000279) SubClassOf(obo:OPL_0000330 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000351)) SubClassOf(obo:OPL_0000330 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000040)) SubClassOf(obo:OPL_0000330 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000117)) SubClassOf(obo:OPL_0000330 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000121)) # Class: obo:OPL_0000331 (Plasmodium berghei merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000331 "A Plasmodium berghei that is found in the bloodstream of the human host and invades erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000331 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000331 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000331 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000331 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000331 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000331 "Plasmodium berghei merozoite") SubClassOf(obo:OPL_0000331 obo:NCBITaxon_5821) SubClassOf(obo:OPL_0000331 obo:OPL_0000270) SubClassOf(obo:OPL_0000331 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000352)) SubClassOf(obo:OPL_0000331 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000096)) # Class: obo:OPL_0000332 (Neospora caninum tachyzoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000332 "A Neospora caninum that is found intracellular in the intermediate hosts in which asexual replication takes place.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000332 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000332 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000332 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890850/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000332 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000332 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000332 "Neospora caninum tachyzoite") SubClassOf(obo:OPL_0000332 obo:NCBITaxon_29176) SubClassOf(obo:OPL_0000332 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000353)) SubClassOf(obo:OPL_0000332 ObjectSomeValuesFrom(obo:RO_0001025 obo:NCBITaxon_9611)) # Class: obo:OPL_0000333 (Eimeria maxima gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000333 "An Eimeria maxima that is located in the bloodstream of the human host.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000333 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000333 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000333 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000333 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000333 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000333 "Eimeria maxima gametocyte") SubClassOf(obo:OPL_0000333 obo:NCBITaxon_5804) SubClassOf(obo:OPL_0000333 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000354)) SubClassOf(obo:OPL_0000333 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000368)) # Class: obo:OPL_0000334 (Eimeria tenella sprozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000334 "An Eimeria tenella is formed in the oocyst. It migrates to and resides in the gut of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000334 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000334 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000334 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000334 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000334 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000334 "Eimeria tenella sprozoite") SubClassOf(obo:OPL_0000334 obo:NCBITaxon_5802) SubClassOf(obo:OPL_0000334 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000355)) SubClassOf(obo:OPL_0000334 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000371)) # Class: obo:OPL_0000335 (Eimeria tenella oocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000335 "An Eimeria tenella that oocyst is formed, found in the gut of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000335 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000335 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000335 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000335 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000335 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000335 "Eimeria tenella oocyst") SubClassOf(obo:OPL_0000335 obo:NCBITaxon_5802) SubClassOf(obo:OPL_0000335 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000356)) SubClassOf(obo:OPL_0000335 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000370)) # Class: obo:OPL_0000336 (Sarcocystis neurona merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000336 "A Sarcocystis neurona that is found in the bloodstream of the human host and invades erythrocytes.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000336 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000336 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000336 "https://www.ncbi.nlm.nih.gov/books/NBK574577/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000336 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000336 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000336 "Sarcocystis neurona merozoite") SubClassOf(obo:OPL_0000336 obo:NCBITaxon_42890) SubClassOf(obo:OPL_0000336 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000357)) SubClassOf(obo:OPL_0000336 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000369)) # Class: obo:OPL_0000337 (Sarcocystis neurona sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000337 "A Sarcocystis neurona is formed in the oocyst. It migrates to and resides in the gut of the mosquito vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000337 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000337 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000337 "https://www.ncbi.nlm.nih.gov/books/NBK574577/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000337 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000337 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000337 "Sarcocystis neurona sporozoite") SubClassOf(obo:OPL_0000337 obo:NCBITaxon_42890) SubClassOf(obo:OPL_0000337 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000358)) SubClassOf(obo:OPL_0000337 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000372)) # Class: obo:OPL_0000338 (Toxoplasma gondii tachyzoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000338 "A Toxoplasma gondii that is formed in tissue in a host and replicates quickly. This replaces the previous term as .") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000338 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000338 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000338 "Toxoplasma gondii trophozoite") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000338 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000338 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000338 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000338 "Toxoplasma gondii tachyzoite") SubClassOf(obo:OPL_0000338 obo:NCBITaxon_5811) SubClassOf(obo:OPL_0000338 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000359)) SubClassOf(obo:OPL_0000338 ObjectSomeValuesFrom(obo:RO_0001025 obo:NCBITaxon_40674)) # Class: obo:OPL_0000339 (Toxoplasma gondii bradyzoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000339 "A Toxoplasma gondii that is formed in a tissue cyst of host, replicating slowly. ") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000339 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000339 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000339 "Toxoplasma gondii cystozoites") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000339 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000339 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000339 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000339 "Toxoplasma gondii bradyzoite") SubClassOf(obo:OPL_0000339 obo:NCBITaxon_5811) SubClassOf(obo:OPL_0000339 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000360)) SubClassOf(obo:OPL_0000339 ObjectSomeValuesFrom(obo:RO_0001025 obo:NCBITaxon_70999)) # Class: obo:OPL_0000340 (Toxoplasma gondii oocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000340 "A Toxoplasma gondii that oocyst is formed, found in the gut of the bug vector.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000340 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000340 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000340 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000340 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000340 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000340 "Toxoplasma gondii oocyst") SubClassOf(obo:OPL_0000340 obo:NCBITaxon_5811) SubClassOf(obo:OPL_0000340 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000361)) SubClassOf(obo:OPL_0000340 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000088)) # Class: obo:OPL_0000341 (Leishmania amazonensis promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000341 "A Leishmania amazonensis that occurs in the gut of a sandfly.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000341 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000341 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000341 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000341 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000341 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000341 "Leishmania amazonensis promastigote") SubClassOf(obo:OPL_0000341 obo:NCBITaxon_5659) SubClassOf(obo:OPL_0000341 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000362)) SubClassOf(obo:OPL_0000341 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000015)) SubClassOf(obo:OPL_0000341 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000194)) SubClassOf(obo:OPL_0000341 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000342 (Leishmania amazonensis amastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000342 "A Leishmania amazonensis that occurs in a mammal tissue.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000342 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000342 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000342 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000342 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000342 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000342 "Leishmania amazonensis amastigote") SubClassOf(obo:OPL_0000342 obo:NCBITaxon_5659) SubClassOf(obo:OPL_0000342 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000363)) SubClassOf(obo:OPL_0000342 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000343 (Leishmania donovani promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000343 "A Leishmania donovani that is that occurs in the gut of a sandfly.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000343 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000343 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000343 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000343 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000343 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000343 "Leishmania donovani promastigote") SubClassOf(obo:OPL_0000343 obo:NCBITaxon_5661) SubClassOf(obo:OPL_0000343 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000364)) SubClassOf(obo:OPL_0000343 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000015)) SubClassOf(obo:OPL_0000343 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000122)) SubClassOf(obo:OPL_0000343 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000194)) # Class: obo:OPL_0000344 (Leishmania donovani amastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000344 "A Leishmania donovani that is that occurs in a mammal tissue.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000344 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000344 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000344 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000344 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000344 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000344 "Leishmania donovani amastigote") SubClassOf(obo:OPL_0000344 obo:NCBITaxon_5661) SubClassOf(obo:OPL_0000344 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000365)) SubClassOf(obo:OPL_0000344 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000122)) # Class: obo:OPL_0000345 (Leishmania infantum promastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000345 "A Leishmania infantum that is that occurs in the gut of a sandfly.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000345 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000345 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000345 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000345 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000345 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000345 "Leishmania infantum promastigote") SubClassOf(obo:OPL_0000345 obo:NCBITaxon_5671) SubClassOf(obo:OPL_0000345 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000366)) SubClassOf(obo:OPL_0000345 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000015)) SubClassOf(obo:OPL_0000345 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000194)) SubClassOf(obo:OPL_0000345 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000346 (Leishmania infantum amastigote) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000346 "A Leishmania infantum that is that occurs in a mammal tissue.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000346 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000346 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000346 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000346 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000346 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000346 "Leishmania infantum amastigote") SubClassOf(obo:OPL_0000346 obo:NCBITaxon_5671) SubClassOf(obo:OPL_0000346 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000367)) SubClassOf(obo:OPL_0000346 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000321)) # Class: obo:OPL_0000347 (Plasmodium vivax ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000347 "An ookinete stage in Plasmodium vivax life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000347 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000347 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000347 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000347 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000347 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000347 "Plasmodium vivax ookinete stage") EquivalentClasses(obo:OPL_0000347 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5855))) SubClassOf(obo:OPL_0000347 obo:OPL_0000296) SubClassOf(obo:OPL_0000347 obo:OPL_0000374) SubClassOf(obo:OPL_0000347 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000348 (Plasmodium vivax sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000348 "A sporozoite stage in Plasmodium vivax life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000348 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000348 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000348 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000348 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000348 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000348 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000348 "Plasmodium vivax sporozoite stage") EquivalentClasses(obo:OPL_0000348 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5855))) SubClassOf(obo:OPL_0000348 obo:OPL_0000300) SubClassOf(obo:OPL_0000348 obo:OPL_0000374) SubClassOf(obo:OPL_0000348 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) SubClassOf(obo:OPL_0000348 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000117)) SubClassOf(obo:OPL_0000348 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000121)) # Class: obo:OPL_0000349 (Plasmodium vivax merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000349 "A merozoite stage in the Plasmodium vivax life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000349 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000349 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000349 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000349 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000349 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000349 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000349 "Plasmodium vivax merozoite stage") EquivalentClasses(obo:OPL_0000349 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5855))) SubClassOf(obo:OPL_0000349 obo:OPL_0000292) SubClassOf(obo:OPL_0000349 obo:OPL_0000374) SubClassOf(obo:OPL_0000349 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000350 (Plasmodium vivax gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000350 "A gametocyte stage in the Plasmodium vivax life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000350 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000350 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000350 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000350 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000350 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000350 "Plasmodium vivax gametocyte stage") EquivalentClasses(obo:OPL_0000350 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5855))) SubClassOf(obo:OPL_0000350 obo:OPL_0000289) SubClassOf(obo:OPL_0000350 obo:OPL_0000374) SubClassOf(obo:OPL_0000350 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) SubClassOf(obo:OPL_0000350 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000351 (Plasmodium berghei sporazoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000351 "A sporozoite stage in the Plasmodium berghei life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000351 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000351 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000351 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000351 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000351 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000351 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000351 "Plasmodium berghei sporazoite stage") EquivalentClasses(obo:OPL_0000351 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5821))) SubClassOf(obo:OPL_0000351 obo:OPL_0000300) SubClassOf(obo:OPL_0000351 obo:OPL_0000375) SubClassOf(obo:OPL_0000351 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000040)) SubClassOf(obo:OPL_0000351 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000117)) SubClassOf(obo:OPL_0000351 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000121)) # Class: obo:OPL_0000352 (Plasmodium berghei merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000352 "A merozoite stage in the Plasmodium berghei life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000352 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000352 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000352 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000352 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000352 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000352 "Plasmodium berghei merozoite stage") EquivalentClasses(obo:OPL_0000352 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5821))) SubClassOf(obo:OPL_0000352 obo:OPL_0000292) SubClassOf(obo:OPL_0000352 obo:OPL_0000375) SubClassOf(obo:OPL_0000352 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000096)) # Class: obo:OPL_0000353 (Neospora caninum tachyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000353 "A tachyzoite stage in the Neospora caninum life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000353 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000353 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000353 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890850/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000353 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000353 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000353 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000353 "Neospora caninum tachyzoite stage") EquivalentClasses(obo:OPL_0000353 ObjectIntersectionOf(obo:OPL_0000325 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_29176))) SubClassOf(obo:OPL_0000353 obo:OPL_0000325) SubClassOf(obo:OPL_0000353 obo:OPL_0000376) SubClassOf(obo:OPL_0000353 ObjectSomeValuesFrom(obo:BFO_0000066 obo:NCBITaxon_9611)) # Class: obo:OPL_0000354 (Eimeria maxima gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000354 "A gametocyte stage in the Eimeria maxima life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000354 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000354 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000354 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000354 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000354 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000354 "Eimeria maxima gametocyte stage") EquivalentClasses(obo:OPL_0000354 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5804))) SubClassOf(obo:OPL_0000354 obo:OPL_0000150) SubClassOf(obo:OPL_0000354 obo:OPL_0000377) SubClassOf(obo:OPL_0000354 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000368)) # Class: obo:OPL_0000355 (Eimeria tenella sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000355 "A sporozoite stage in the Eimeria tenella life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000355 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000355 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000355 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238154/") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000355 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000355 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000355 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000355 "Eimeria tenella sporozoite stage") EquivalentClasses(obo:OPL_0000355 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5802))) SubClassOf(obo:OPL_0000355 obo:OPL_0000152) SubClassOf(obo:OPL_0000355 obo:OPL_0000378) SubClassOf(obo:OPL_0000355 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000371)) # Class: obo:OPL_0000356 (Eimeria tenella oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000356 "An oocyst stage in the Eimeria tenella life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000356 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000356 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000356 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000356 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000356 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000356 "Eimeria tenella oocyst stage") EquivalentClasses(obo:OPL_0000356 ObjectIntersectionOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5802))) SubClassOf(obo:OPL_0000356 obo:OPL_0000073) SubClassOf(obo:OPL_0000356 obo:OPL_0000378) SubClassOf(obo:OPL_0000356 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000370)) # Class: obo:OPL_0000357 (Sarcocystis neurona merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000357 "A merozoite stage in the Sarcocystis neurona life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000357 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000357 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000357 "https://wcvm.usask.ca/learnaboutparasites/parasites/sarcocystis-neurona.php") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000357 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000357 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000357 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000357 "Sarcocystis neurona merozoite stage") EquivalentClasses(obo:OPL_0000357 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_42890))) SubClassOf(obo:OPL_0000357 obo:OPL_0000036) SubClassOf(obo:OPL_0000357 obo:OPL_0000379) SubClassOf(obo:OPL_0000357 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000369)) # Class: obo:OPL_0000358 (Sarcocystis neurona sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000358 "A sporozoite stage in the Sarcocystis neurona life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000358 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000358 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000358 "https://pubmed.ncbi.nlm.nih.gov/15272465/") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000358 "https://wcvm.usask.ca/learnaboutparasites/parasites/sarcocystis-neurona.php") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000358 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000358 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000358 "Sarcocystis neurona sporozoite stage") EquivalentClasses(obo:OPL_0000358 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_42890))) SubClassOf(obo:OPL_0000358 obo:OPL_0000152) SubClassOf(obo:OPL_0000358 obo:OPL_0000379) SubClassOf(obo:OPL_0000358 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000372)) # Class: obo:OPL_0000359 (Toxoplasma gondii tachyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000359 "A tachyzoite stage in the Toxoplasma gondii life cycle.") AnnotationAssertion(obo:IAO_0000116 obo:OPL_0000359 "Tachyzoites can be found in various organs and tissues during the acute phase of Toxoplasma gondii infection, including lymph nodes, spleen, liver, lungs, and the central nervous system. ") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000359 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000359 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000359 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000359 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000359 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000359 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000359 "Toxoplasma gondii tachyzoite stage") EquivalentClasses(obo:OPL_0000359 ObjectIntersectionOf(obo:OPL_0000325 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5811))) SubClassOf(obo:OPL_0000359 obo:OPL_0000325) SubClassOf(obo:OPL_0000359 obo:OPL_0000380) SubClassOf(obo:OPL_0000359 ObjectSomeValuesFrom(obo:BFO_0000066 obo:NCBITaxon_40674)) # Class: obo:OPL_0000360 (Toxoplasma gondii bradyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000360 "A bradyzoite stage in the Toxoplasma gondii life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000360 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000360 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000360 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000360 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000360 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000360 "Toxoplasma gondii bradyzoite stage") EquivalentClasses(obo:OPL_0000360 ObjectIntersectionOf(obo:OPL_0000324 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5811))) SubClassOf(obo:OPL_0000360 obo:OPL_0000324) SubClassOf(obo:OPL_0000360 obo:OPL_0000380) SubClassOf(obo:OPL_0000360 ObjectSomeValuesFrom(obo:BFO_0000066 obo:NCBITaxon_70999)) # Class: obo:OPL_0000361 (Toxoplasma gondii oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000361 "An oocyst stage in the Toxoplasma gondii life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000361 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000361 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000361 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC106833/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000361 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000361 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000361 "Toxoplasma gondii oocyst stage") EquivalentClasses(obo:OPL_0000361 ObjectIntersectionOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5811))) SubClassOf(obo:OPL_0000361 obo:OPL_0000073) SubClassOf(obo:OPL_0000361 obo:OPL_0000380) SubClassOf(obo:OPL_0000361 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000088)) # Class: obo:OPL_0000362 (Leishmania amazonensis promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000362 "A promastigote stage in the Leishmania amazonensis life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000362 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000362 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000362 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000362 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000362 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000362 "Leishmania amazonensis promastigote stage") EquivalentClasses(obo:OPL_0000362 ObjectIntersectionOf(obo:OPL_0000151 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5659))) SubClassOf(obo:OPL_0000362 obo:OPL_0000151) SubClassOf(obo:OPL_0000362 obo:OPL_0000381) SubClassOf(obo:OPL_0000362 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000015)) SubClassOf(obo:OPL_0000362 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000194)) SubClassOf(obo:OPL_0000362 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000363 (Leishmania amazonensis amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000363 "An amastigote stage in the Leishmania amazonensis life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000363 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000363 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000363 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000363 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000363 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000363 "Leishmania amazonensis amastigote stage") EquivalentClasses(obo:OPL_0000363 ObjectIntersectionOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5659))) SubClassOf(obo:OPL_0000363 obo:OPL_0000114) SubClassOf(obo:OPL_0000363 obo:OPL_0000381) SubClassOf(obo:OPL_0000363 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000364 (Leishmania donovani promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000364 "A promastigote stage in the Leishmania donovani life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000364 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000364 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000364 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000364 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000364 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000364 "Leishmania donovani promastigote stage") EquivalentClasses(obo:OPL_0000364 ObjectIntersectionOf(obo:OPL_0000151 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5661))) SubClassOf(obo:OPL_0000364 obo:OPL_0000151) SubClassOf(obo:OPL_0000364 obo:OPL_0000382) SubClassOf(obo:OPL_0000364 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000015)) SubClassOf(obo:OPL_0000364 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000122)) SubClassOf(obo:OPL_0000364 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000194)) # Class: obo:OPL_0000365 (Leishmania donovani amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000365 "An amastigote stage in the Leishmania donovani life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000365 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000365 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000365 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000365 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000365 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000365 "Leishmania donovani amastigote stage") EquivalentClasses(obo:OPL_0000365 ObjectIntersectionOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5661))) SubClassOf(obo:OPL_0000365 obo:OPL_0000114) SubClassOf(obo:OPL_0000365 obo:OPL_0000382) SubClassOf(obo:OPL_0000365 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000122)) # Class: obo:OPL_0000366 (Leishmania infantum promastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000366 "A promastigote stage in the Leishmania infantum life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000366 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000366 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000366 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000366 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000366 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000366 "Leishmania infantum promastigote stage") EquivalentClasses(obo:OPL_0000366 ObjectIntersectionOf(obo:OPL_0000151 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5671))) SubClassOf(obo:OPL_0000366 obo:OPL_0000151) SubClassOf(obo:OPL_0000366 obo:OPL_0000383) SubClassOf(obo:OPL_0000366 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000015)) SubClassOf(obo:OPL_0000366 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000194)) SubClassOf(obo:OPL_0000366 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000367 (Leishmania infantum amastigote stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000367 "An amastigote stage in the Leishmania infantum life cycle.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000367 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000367 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000367 "https://www.cdc.gov/parasites/leishmaniasis/biology.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000367 "https://github.com/OPL-ontology/OPL/issues/21") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000367 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000367 "Leishmania infantum amastigote stage") EquivalentClasses(obo:OPL_0000367 ObjectIntersectionOf(obo:OPL_0000114 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5671))) SubClassOf(obo:OPL_0000367 obo:OPL_0000114) SubClassOf(obo:OPL_0000367 obo:OPL_0000383) SubClassOf(obo:OPL_0000367 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000321)) # Class: obo:OPL_0000368 (Gallus gallus erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000368 "An erythrocyte that is a part of or originated from a Gallus gallus.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000368 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000368 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000368 "Gallus gallus erythrocyte") EquivalentClasses(obo:OPL_0000368 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9031))) SubClassOf(obo:OPL_0000368 obo:OPL_0000311) # Class: obo:OPL_0000369 (Canis lupus familiaris erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000369 "An erythrocyte that is a part of or originated from a Canis lupus familiaris.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000369 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000369 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000369 "Canis lupus familiaris erythrocyte") EquivalentClasses(obo:OPL_0000369 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9615))) SubClassOf(obo:OPL_0000369 obo:OPL_0000311) # Class: obo:OPL_0000370 (Gallus gallus midgut) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000370 "A midgut that is a part of or originated from a Gallus gallus.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000370 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000370 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000370 "Gallus gallus midgut") EquivalentClasses(obo:OPL_0000370 ObjectIntersectionOf(obo:UBERON_0001045 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9031))) SubClassOf(obo:OPL_0000370 obo:UBERON_0001045) # Class: obo:OPL_0000371 (Gallus gallus intestine) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000371 "An intestine that is a part of or originated from a Gallus gallus.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000371 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000371 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000371 "Gallus gallus intestine") EquivalentClasses(obo:OPL_0000371 ObjectIntersectionOf(obo:UBERON_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9031))) SubClassOf(obo:OPL_0000371 obo:UBERON_0000160) # Class: obo:OPL_0000372 (Mammalia muscle tissue) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000372 "A muscle tissue that is a part of or originated from a Mammalia.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000372 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000372 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000372 "Mammalia muscle tissue") EquivalentClasses(obo:OPL_0000372 ObjectIntersectionOf(obo:UBERON_0002385 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_40674))) SubClassOf(obo:OPL_0000372 obo:UBERON_0002385) # Class: obo:OPL_0000373 (Triatominae intestine) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000373 "An intestine that is a part of or originated from a Triatominae.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000373 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000373 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000373 "Triatominae intestine") EquivalentClasses(obo:OPL_0000373 ObjectIntersectionOf(obo:UBERON_0000160 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_70999))) SubClassOf(obo:OPL_0000373 obo:UBERON_0000160) # Class: obo:OPL_0000374 (Plasmodium vivax lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000374 "A lifecycle stage of Plasmodium vivax.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000374 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000374 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000374 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000374 "Plasmodium vivax lifecycle stage") EquivalentClasses(obo:OPL_0000374 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5855))) SubClassOf(obo:OPL_0000374 obo:OPL_0000181) # Class: obo:OPL_0000375 (Plasmodium berghei lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000375 "A lifecycle stage of Plasmodium berghei.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000375 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000375 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000375 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000375 "Plasmodium berghei lifecycle stage") EquivalentClasses(obo:OPL_0000375 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5821))) SubClassOf(obo:OPL_0000375 obo:OPL_0000181) # Class: obo:OPL_0000376 (Neospora caninum lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000376 "A lifecycle stage of Neospora caninum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000376 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000376 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000376 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000376 "Neospora caninum lifecycle stage") EquivalentClasses(obo:OPL_0000376 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_29176))) SubClassOf(obo:OPL_0000376 obo:OPL_0000181) # Class: obo:OPL_0000377 (Eimeria maxima lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000377 "A lifecycle stage of Eimeria maxima.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000377 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000377 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000377 "Eimeria maxima lifecycle stage") EquivalentClasses(obo:OPL_0000377 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5804))) SubClassOf(obo:OPL_0000377 obo:OPL_0000181) # Class: obo:OPL_0000378 (Eimeria tenella lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000378 "A lifecycle stage of Eimeria tenella.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000378 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000378 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000378 "Eimeria tenella lifecycle stage") EquivalentClasses(obo:OPL_0000378 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5802))) SubClassOf(obo:OPL_0000378 obo:OPL_0000181) # Class: obo:OPL_0000379 (Sarcocystis neurona lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000379 "A lifecycle stage of Sarcocystis neurona.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000379 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000379 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000379 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000379 "Sarcocystis neurona lifecycle stage") EquivalentClasses(obo:OPL_0000379 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_42890))) SubClassOf(obo:OPL_0000379 obo:OPL_0000181) # Class: obo:OPL_0000380 (Toxoplasma gondii lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000380 "A lifecycle stage of Toxoplasma gondii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000380 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000380 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000380 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000380 "Toxoplasma gondii lifecycle stage") EquivalentClasses(obo:OPL_0000380 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5811))) SubClassOf(obo:OPL_0000380 obo:OPL_0000181) # Class: obo:OPL_0000381 (Leishmania amazonensis lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000381 "A lifecycle stage of Leishmania amazonensis.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000381 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000381 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000381 "Leishmania amazonensis lifecycle stage") EquivalentClasses(obo:OPL_0000381 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5659))) SubClassOf(obo:OPL_0000381 obo:OPL_0000181) # Class: obo:OPL_0000382 (Leishmania donovani lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000382 "A lifecycle stage of Leishmania donovani.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000382 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000382 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000382 "Leishmania donovani lifecycle stage") EquivalentClasses(obo:OPL_0000382 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5661))) SubClassOf(obo:OPL_0000382 obo:OPL_0000181) # Class: obo:OPL_0000383 (Leishmania infantum lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000383 "A lifecycle stage of Leishmania infantum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000383 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000383 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000383 "Leishmania infantum lifecycle stage") EquivalentClasses(obo:OPL_0000383 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5671))) SubClassOf(obo:OPL_0000383 obo:OPL_0000181) # Class: obo:OPL_0000384 (Plasmodium yoelii ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000384 "A Plasmodium yoelii in ookinete stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000384 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000384 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000384 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000384 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000384 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000384 "Plasmodium yoelii ookinete") SubClassOf(obo:OPL_0000384 obo:NCBITaxon_5861) SubClassOf(obo:OPL_0000384 obo:OPL_0000274) SubClassOf(obo:OPL_0000384 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000399)) SubClassOf(obo:OPL_0000384 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000385 (Plasmodium yoelii sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000385 "A Plasmodium yoelii in sporozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000385 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000385 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000385 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000385 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000385 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000385 "Plasmodium yoelii sporozoite") SubClassOf(obo:OPL_0000385 obo:NCBITaxon_5861) SubClassOf(obo:OPL_0000385 obo:OPL_0000278) SubClassOf(obo:OPL_0000385 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000400)) # Class: obo:OPL_0000386 (Plasmodium yoelii merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000386 "A Plasmodium yoelii in merozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000386 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000386 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000386 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000386 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000386 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000386 "Plasmodium yoelii merozoite") SubClassOf(obo:OPL_0000386 obo:NCBITaxon_5861) SubClassOf(obo:OPL_0000386 obo:OPL_0000270) SubClassOf(obo:OPL_0000386 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000401)) SubClassOf(obo:OPL_0000386 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) SubClassOf(obo:OPL_0000386 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000387 (Plasmodium yoelii gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000387 "A Plasmodium yoelii in gametocyte stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000387 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000387 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000387 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000387 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000387 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000387 "Plasmodium yoelii gametocyte") SubClassOf(obo:OPL_0000387 obo:NCBITaxon_5861) SubClassOf(obo:OPL_0000387 obo:OPL_0000267) SubClassOf(obo:OPL_0000387 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000402)) SubClassOf(obo:OPL_0000387 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000388 (Plasmodium chabaudi ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000388 "A Plasmodium chabaudi in ookinete stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000388 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000388 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000388 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000388 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000388 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000388 "Plasmodium chabaudi ookinete") SubClassOf(obo:OPL_0000388 obo:NCBITaxon_5825) SubClassOf(obo:OPL_0000388 obo:OPL_0000274) SubClassOf(obo:OPL_0000388 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000403)) SubClassOf(obo:OPL_0000388 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000389 (Plasmodium chabaudi sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000389 "A Plasmodium chabaudi in sporozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000389 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000389 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000389 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000389 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000389 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000389 "Plasmodium chabaudi sporozoite") SubClassOf(obo:OPL_0000389 obo:NCBITaxon_5825) SubClassOf(obo:OPL_0000389 obo:OPL_0000278) SubClassOf(obo:OPL_0000389 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000404)) # Class: obo:OPL_0000390 (Plasmodium chabaudi merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000390 "A Plasmodium chabaudi in merozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000390 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000390 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000390 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000390 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000390 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000390 "Plasmodium chabaudi merozoite") SubClassOf(obo:OPL_0000390 obo:NCBITaxon_5825) SubClassOf(obo:OPL_0000390 obo:OPL_0000270) SubClassOf(obo:OPL_0000390 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000405)) SubClassOf(obo:OPL_0000390 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000391 (Plasmodium chabaudi gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000391 "A Plasmodium chabaudi in gametocyte stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000391 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000391 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000391 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000391 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000391 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000391 "Plasmodium chabaudi gametocyte") SubClassOf(obo:OPL_0000391 obo:NCBITaxon_5825) SubClassOf(obo:OPL_0000391 obo:OPL_0000267) SubClassOf(obo:OPL_0000391 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000406)) SubClassOf(obo:OPL_0000391 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000392 (Plasmodium knowlesi ookinete) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000392 "A Plasmodium knowlesi in ookinete stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000392 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000392 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000392 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000392 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000392 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000392 "Plasmodium knowlesi ookinete") SubClassOf(obo:OPL_0000392 obo:NCBITaxon_5850) SubClassOf(obo:OPL_0000392 obo:OPL_0000274) SubClassOf(obo:OPL_0000392 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000407)) SubClassOf(obo:OPL_0000392 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000032)) # Class: obo:OPL_0000393 (Plasmodium knowlesi sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000393 "A Plasmodium knowlesi in sporozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000393 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000393 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000393 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000393 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000393 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000393 "Plasmodium knowlesi sporozoite") SubClassOf(obo:OPL_0000393 obo:NCBITaxon_5850) SubClassOf(obo:OPL_0000393 obo:OPL_0000278) SubClassOf(obo:OPL_0000393 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000408)) # Class: obo:OPL_0000394 (Plasmodium knowlesi merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000394 "A Plasmodium knowlesi in merozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000394 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000394 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000394 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000394 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000394 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000394 "Plasmodium knowlesi merozoite") SubClassOf(obo:OPL_0000394 obo:NCBITaxon_5850) SubClassOf(obo:OPL_0000394 obo:OPL_0000270) SubClassOf(obo:OPL_0000394 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000409)) SubClassOf(obo:OPL_0000394 ObjectSomeValuesFrom(obo:RO_0000087 obo:PIDO_0000002)) SubClassOf(obo:OPL_0000394 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000395 (Plasmodium knowlesi gametocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000395 "A Plasmodium knowlesi in gametocyte stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000395 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000395 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000395 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000395 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000395 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000395 "Plasmodium knowlesi gametocyte") SubClassOf(obo:OPL_0000395 obo:NCBITaxon_5850) SubClassOf(obo:OPL_0000395 obo:OPL_0000267) SubClassOf(obo:OPL_0000395 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000410)) SubClassOf(obo:OPL_0000395 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000414)) # Class: obo:OPL_0000396 (Eimeria acervulina merozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000396 "A Eimeria acervulina in merozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000396 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000396 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000396 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000396 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000396 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000396 "Eimeria acervulina merozoite") SubClassOf(obo:OPL_0000396 obo:NCBITaxon_5801) SubClassOf(obo:OPL_0000396 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000411)) SubClassOf(obo:OPL_0000396 ObjectSomeValuesFrom(obo:RO_0001025 obo:OPL_0000368)) # Class: obo:OPL_0000397 (Cryptosporidium parvum oocyst) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000397 "A Cryptosporidium parvum in oocyst stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000397 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000397 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000397 "https://www.cdc.gov/parasites/crypto/pathogen.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000397 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000397 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000397 "Cryptosporidium parvum oocyst") SubClassOf(obo:OPL_0000397 obo:NCBITaxon_5807) SubClassOf(obo:OPL_0000397 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000412)) # Class: obo:OPL_0000398 (Cryptosporidium parvum sporozoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000398 "A Cryptosporidium parvum in sporozoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000398 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000398 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000398 "https://www.cdc.gov/parasites/crypto/pathogen.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000398 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000398 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000398 "Cryptosporidium parvum sporozoite") SubClassOf(obo:OPL_0000398 obo:NCBITaxon_5807) SubClassOf(obo:OPL_0000398 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000413)) # Class: obo:OPL_0000399 (Plasmodium yoelii ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000399 "An ookinete stage in the Plasmodium yoelii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000399 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000399 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000399 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000399 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000399 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000399 "Plasmodium yoelii ookinete stage") EquivalentClasses(obo:OPL_0000399 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5861))) SubClassOf(obo:OPL_0000399 obo:OPL_0000296) SubClassOf(obo:OPL_0000399 obo:OPL_0000415) SubClassOf(obo:OPL_0000399 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000400 (Plasmodium yoelii sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000400 "A sporozoite stage in the Plasmodium yoelii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000400 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000400 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000400 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000400 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000400 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000400 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000400 "Plasmodium yoelii sporozoite stage") EquivalentClasses(obo:OPL_0000400 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5861))) SubClassOf(obo:OPL_0000400 obo:OPL_0000300) SubClassOf(obo:OPL_0000400 obo:OPL_0000415) # Class: obo:OPL_0000401 (Plasmodium yoelii merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000401 "A merozoite stage in the Plasmodium yoelii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000401 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000401 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000401 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000401 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000401 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000401 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000401 "Plasmodium yoelii merozoite stage") EquivalentClasses(obo:OPL_0000401 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5861))) SubClassOf(obo:OPL_0000401 obo:OPL_0000292) SubClassOf(obo:OPL_0000401 obo:OPL_0000415) SubClassOf(obo:OPL_0000401 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000402 (Plasmodium yoelii gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000402 "A gametocyte stage in the Plasmodium yoelii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000402 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000402 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000402 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000402 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000402 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000402 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000402 "Plasmodium yoelii gametocyte stage") EquivalentClasses(obo:OPL_0000402 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5861))) SubClassOf(obo:OPL_0000402 obo:OPL_0000289) SubClassOf(obo:OPL_0000402 obo:OPL_0000415) SubClassOf(obo:OPL_0000402 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000403 (Plasmodium chabaudi ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000403 "An ookinete stage in the Plasmodium chabaudi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000403 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000403 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000403 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000403 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000403 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000403 "Plasmodium chabaudi ookinete stage") EquivalentClasses(obo:OPL_0000403 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5825))) SubClassOf(obo:OPL_0000403 obo:OPL_0000296) SubClassOf(obo:OPL_0000403 obo:OPL_0000416) SubClassOf(obo:OPL_0000403 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000404 (Plasmodium chabaudi sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000404 "A sporozoite stage in the Plasmodium chabaudi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000404 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000404 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000404 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000404 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000404 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000404 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000404 "Plasmodium chabaudi sporozoite stage") EquivalentClasses(obo:OPL_0000404 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5825))) SubClassOf(obo:OPL_0000404 obo:OPL_0000300) SubClassOf(obo:OPL_0000404 obo:OPL_0000416) # Class: obo:OPL_0000405 (Plasmodium chabaudi merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000405 "A merozoite stage in the Plasmodium chabaudi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000405 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000405 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000405 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000405 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000405 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000405 "Plasmodium chabaudi merozoite stage") EquivalentClasses(obo:OPL_0000405 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5825))) SubClassOf(obo:OPL_0000405 obo:OPL_0000292) SubClassOf(obo:OPL_0000405 obo:OPL_0000416) SubClassOf(obo:OPL_0000405 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000406 (Plasmodium chabaudi gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000406 "A gametocyte stage in the Plasmodium chabaudi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000406 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000406 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000406 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000406 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000406 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000406 "Plasmodium chabaudi gametocyte stage") EquivalentClasses(obo:OPL_0000406 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5825))) SubClassOf(obo:OPL_0000406 obo:OPL_0000289) SubClassOf(obo:OPL_0000406 obo:OPL_0000416) SubClassOf(obo:OPL_0000406 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000407 (Plasmodium knowlesi ookinete stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000407 "An ookinete stage in the Plasmodium knowlesi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000407 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000407 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000407 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000407 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000407 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000407 "Plasmodium knowlesi ookinete stage") EquivalentClasses(obo:OPL_0000407 ObjectIntersectionOf(obo:OPL_0000153 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5850))) SubClassOf(obo:OPL_0000407 obo:OPL_0000296) SubClassOf(obo:OPL_0000407 obo:OPL_0000417) SubClassOf(obo:OPL_0000407 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000032)) # Class: obo:OPL_0000408 (Plasmodium knowlesi sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000408 "A sporozoite stage in the Plasmodium knowlesi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000408 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000408 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000408 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000408 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000408 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000408 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000408 "Plasmodium knowlesi sporozoite stage") EquivalentClasses(obo:OPL_0000408 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5850))) SubClassOf(obo:OPL_0000408 obo:OPL_0000300) SubClassOf(obo:OPL_0000408 obo:OPL_0000417) # Class: obo:OPL_0000409 (Plasmodium knowlesi merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000409 "A merozoite stage in the Plasmodium knowlesi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000409 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000409 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000409 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000409 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000409 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000409 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000409 "Plasmodium knowlesi merozoite stage") EquivalentClasses(obo:OPL_0000409 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5850))) SubClassOf(obo:OPL_0000409 obo:OPL_0000292) SubClassOf(obo:OPL_0000409 obo:OPL_0000417) SubClassOf(obo:OPL_0000409 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000410 (Plasmodium knowlesi gametocyte stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000410 "A gametocyte stage in the Plasmodium knowlesi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000410 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000410 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000410 "https://www.cdc.gov/dpdx/malaria/index.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000410 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000410 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000410 "Plasmodium knowlesi gametocyte stage") EquivalentClasses(obo:OPL_0000410 ObjectIntersectionOf(obo:OPL_0000150 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5850))) SubClassOf(obo:OPL_0000410 obo:OPL_0000289) SubClassOf(obo:OPL_0000410 obo:OPL_0000417) SubClassOf(obo:OPL_0000410 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000414)) # Class: obo:OPL_0000411 (Eimeria acervulina merozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000411 "A merozoite stage in the Eimeria acervulina.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000411 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000411 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000411 "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351014/") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000411 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000411 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000411 "Eimeria acervulina merozoite stage") EquivalentClasses(obo:OPL_0000411 ObjectIntersectionOf(obo:OPL_0000036 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5801))) SubClassOf(obo:OPL_0000411 obo:OPL_0000036) SubClassOf(obo:OPL_0000411 obo:OPL_0000418) SubClassOf(obo:OPL_0000411 ObjectSomeValuesFrom(obo:BFO_0000066 obo:OPL_0000368)) # Class: obo:OPL_0000412 (Cryptosporidium parvum oocyst stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000412 "An oocyst stage in the Cryptosporidium parvum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000412 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000412 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000412 "https://www.cdc.gov/parasites/crypto/pathogen.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000412 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000412 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000412 "Cryptosporidium parvum oocyst stage") EquivalentClasses(obo:OPL_0000412 ObjectIntersectionOf(obo:OPL_0000073 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5807))) SubClassOf(obo:OPL_0000412 obo:OPL_0000073) SubClassOf(obo:OPL_0000412 obo:OPL_0000419) # Class: obo:OPL_0000413 (Cryptosporidium parvum sporozoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000413 "A sporozoite stage in the Cryptosporidium parvum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000413 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000413 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000413 "https://www.cdc.gov/parasites/crypto/pathogen.html") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000413 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000413 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000413 "Cryptosporidium parvum sporozoite stage") EquivalentClasses(obo:OPL_0000413 ObjectIntersectionOf(obo:OPL_0000152 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5807))) SubClassOf(obo:OPL_0000413 obo:OPL_0000152) SubClassOf(obo:OPL_0000413 obo:OPL_0000419) # Class: obo:OPL_0000414 (Primates erythrocyte) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000414 "An erythrocyte that is a part of or originated from a primate.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000414 "Jie Zheng") AnnotationAssertion(obo:IAO_0000118 obo:OPL_0000414 "primate erythrocyte") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000414 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000414 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000414 "Primates erythrocyte") EquivalentClasses(obo:OPL_0000414 ObjectIntersectionOf(obo:CL_0000232 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9443))) SubClassOf(obo:OPL_0000414 obo:OPL_0000311) # Class: obo:OPL_0000415 (Plasmodium yoelii lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000415 "A lifecycle stage of Plasmodium yoelii.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000415 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000415 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000415 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000415 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000415 "Plasmodium yoelii lifecycle stage") EquivalentClasses(obo:OPL_0000415 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5861))) SubClassOf(obo:OPL_0000415 obo:OPL_0000181) # Class: obo:OPL_0000416 (Plasmodium chabaudi lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000416 "A lifecycle stage of Plasmodium chabaudi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000416 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000416 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000416 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000416 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000416 "Plasmodium chabaudi lifecycle stage") EquivalentClasses(obo:OPL_0000416 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5825))) SubClassOf(obo:OPL_0000416 obo:OPL_0000181) # Class: obo:OPL_0000417 (Plasmodium knowlesi lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000417 "A lifecycle stage of Plasmodium knowlesi.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000417 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000417 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000417 "He Group") AnnotationAssertion(obo:IAO_0000412 obo:OPL_0000417 obo:opl.owl) AnnotationAssertion(rdfs:label obo:OPL_0000417 "Plasmodium knowlesi lifecycle stage") EquivalentClasses(obo:OPL_0000417 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5850))) SubClassOf(obo:OPL_0000417 obo:OPL_0000181) # Class: obo:OPL_0000418 (Eimeria acervulina lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000418 "A lifecycle stage of Eimeria acervulina.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000418 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000418 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000418 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000418 "Eimeria acervulina lifecycle stage") EquivalentClasses(obo:OPL_0000418 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5801))) SubClassOf(obo:OPL_0000418 obo:OPL_0000181) # Class: obo:OPL_0000419 (Cryptosporidium parvum lifecycle stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000419 "A lifecycle stage of Cryptosporidium parvum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000419 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000419 "He Group") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000419 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000419 "Cryptosporidium parvum lifecycle stage") EquivalentClasses(obo:OPL_0000419 ObjectIntersectionOf(obo:OPL_0000181 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_5807))) SubClassOf(obo:OPL_0000419 obo:OPL_0000181) # Class: obo:OPL_0000420 (Neospora caninum bradyzoite) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000420 "A Neospora caninum in bradyzoite stage.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000420 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000420 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000420 "https://www.mdpi.com/2306-7381/9/2/87") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000420 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000420 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000420 "Neospora caninum bradyzoite") SubClassOf(obo:OPL_0000420 obo:NCBITaxon_29176) SubClassOf(obo:OPL_0000420 ObjectSomeValuesFrom(obo:RO_0000056 obo:OPL_0000421)) SubClassOf(obo:OPL_0000420 ObjectSomeValuesFrom(obo:RO_0001025 obo:NCBITaxon_9913)) # Class: obo:OPL_0000421 (Neospora caninum bradyzoite stage) AnnotationAssertion(obo:IAO_0000115 obo:OPL_0000421 "A bradyzoite stage in the Neospora caninum.") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000421 "Anthony Huffman") AnnotationAssertion(obo:IAO_0000117 obo:OPL_0000421 "Jie Zheng") AnnotationAssertion(obo:IAO_0000119 obo:OPL_0000421 "https://www.mdpi.com/2306-7381/9/2/87") AnnotationAssertion(obo:IAO_0000233 obo:OPL_0000421 "https://github.com/OPL-ontology/OPL/issues/24") AnnotationAssertion(obo:IAO_0000234 obo:OPL_0000421 "He Group") AnnotationAssertion(rdfs:label obo:OPL_0000421 "Neospora caninum bradyzoite stage") EquivalentClasses(obo:OPL_0000421 ObjectIntersectionOf(obo:OPL_0000324 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_29176))) SubClassOf(obo:OPL_0000421 obo:OPL_0000324) SubClassOf(obo:OPL_0000421 obo:OPL_0000376) SubClassOf(obo:OPL_0000421 ObjectSomeValuesFrom(obo:BFO_0000066 obo:NCBITaxon_9913)) # Class: obo:PIDO_0000001 (ectoparasite role) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000001 "A parasitic role that is realized when an organism with a parasitic role is realized through an interaction of the host’s outer integument.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000001 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000001 "ectoparasite role"@en) SubClassOf(obo:PIDO_0000001 obo:IDO_0000403) # Class: obo:PIDO_0000002 (endoparasite role) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000002 "A parasitic role that is realized when an organism with a parasitic role is through an interaction of the host’s internal tissues.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000002 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000002 "endoparasite role"@en) SubClassOf(obo:PIDO_0000002 obo:IDO_0000403) # Class: obo:PIDO_0000003 (parasitic animal) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000003 "An animal that has the parasitic role.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000003 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000003 "parasitic animal"@en) EquivalentClasses(obo:PIDO_0000003 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000403)) SubClassOf(obo:PIDO_0000003 obo:NCBITaxon_2759) # Class: obo:PIDO_0000004 (parasitic eukaryotic microbe) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000004 "An eukaryotic microbe, i.e. a protist, that has the parasitic organism that is a eukaryotic microbe, i.e a protist.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000004 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000004 "parasitic eukaryotic microbe"@en) EquivalentClasses(obo:PIDO_0000004 ObjectSomeValuesFrom(obo:RO_0000087 obo:IDO_0000403)) SubClassOf(obo:PIDO_0000004 obo:NCBITaxon_2759) # Class: obo:PIDO_0000005 (infection-causing parasite) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000005 "A parasite organism that is a participant of an infection of a new host") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000005 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000005 "infection-causing parasite"@en) EquivalentClasses(obo:PIDO_0000005 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:PIDO_0000008))) SubClassOf(obo:PIDO_0000005 obo:OPL_0000232) SubClassOf(obo:PIDO_0000005 ObjectSomeValuesFrom(obo:BFO_0000050 obo:PIDO_0000011)) # Class: obo:PIDO_0000006 (disease-causing parasite) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000006 "A parasite organism that is a participant of an infection of a new host") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000006 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000006 "disease-causing parasite"@en) EquivalentClasses(obo:PIDO_0000006 ObjectIntersectionOf(obo:OBI_0100026 ObjectSomeValuesFrom(obo:RO_0000056 obo:PIDO_0000009))) SubClassOf(obo:PIDO_0000006 obo:OPL_0000232) SubClassOf(obo:PIDO_0000006 ObjectSomeValuesFrom(obo:BFO_0000050 obo:DOID_1398)) # Class: obo:PIDO_0000008 (infection-causing parasite life stage) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000008 "A parasite organism life stage that initiates the infection process within the host.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000008 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000008 "infection-causing parasite life stage"@en) SubClassOf(obo:PIDO_0000008 obo:UBERON_0000105) # Class: obo:PIDO_0000009 (disease-causing parasite life stage) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000009 "A parasite organism life stage that initiates the disease process within the host.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000009 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000009 "disease-causing parasite life stage"@en) SubClassOf(obo:PIDO_0000009 obo:BFO_0000015) # Class: obo:PIDO_0000011 (parasite infection) AnnotationAssertion(obo:IAO_0000115 obo:PIDO_0000011 "An infection that has part caused by a parasite.") AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000011 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:PIDO_0000011 "parasite infection"@en) SubClassOf(obo:PIDO_0000011 obo:IDO_0000586) # Class: obo:PIDO_0000013 (malaria drug role) AnnotationAssertion(oboInOwl:created_by obo:PIDO_0000013 "Anthony Huffman") AnnotationAssertion(rdfs:comment obo:PIDO_0000013 "A drug role that targets the malaria-causing parasite.") AnnotationAssertion(rdfs:label obo:PIDO_0000013 "malaria drug role"@en) SubClassOf(obo:PIDO_0000013 ) # Class: obo:TRANS_0000000 (transmission process) AnnotationAssertion(obo:IAO_0000115 obo:TRANS_0000000 "A process that is the means during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host.") AnnotationAssertion(obo:IAO_0000116 obo:TRANS_0000000 "Suggested definition: A process by which a pathogen passes from one host organism to a second host organism of the same Species.") AnnotationAssertion(obo:IAO_0000116 obo:TRANS_0000000 "Suggested label: pathogen transmission process") AnnotationAssertion(obo:IAO_0000412 obo:TRANS_0000000 obo:trans.owl) AnnotationAssertion(obo:IAO_0000412 obo:TRANS_0000000 "Transmission Ontology: http://purl.obolibrary.org/obo/trans.owl") AnnotationAssertion(rdfs:label obo:TRANS_0000000 "transmission process") SubClassOf(obo:TRANS_0000000 obo:BFO_0000015) # Class: obo:TRANS_0000002 (indirect) AnnotationAssertion(obo:IAO_0000115 obo:TRANS_0000002 "Indirect transmission is a transmission process during which the pathogen is indirectly transferred from a reservoir, source or host to another host by intermediary vehicles, vectors or as airborne dust particles.") AnnotationAssertion(obo:IAO_0000116 obo:TRANS_0000002 "Suggested label: indirect pathogen transmission process") AnnotationAssertion(obo:IAO_0000412 obo:TRANS_0000002 obo:trans.owl) AnnotationAssertion(rdfs:label obo:TRANS_0000002 "indirect") SubClassOf(obo:TRANS_0000002 obo:TRANS_0000000) # Class: obo:UBERON_0000056 (ureter) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000056 "Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000056 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0000056 "ureter") SubClassOf(obo:UBERON_0000056 obo:UBERON_0000465) # Class: obo:UBERON_0000105 (life cycle stage) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000105 "A spatiotemporal region encompassing some part of the life cycle of an organism.") AnnotationAssertion(obo:IAO_0000116 obo:UBERON_0000105 "this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000105 obo:uberon.owl) AnnotationAssertion(obo:RO_0002175 obo:UBERON_0000105 obo:NCBITaxon_33090) AnnotationAssertion(obo:RO_0002175 obo:UBERON_0000105 obo:NCBITaxon_33208) AnnotationAssertion(obo:RO_0002175 obo:UBERON_0000105 obo:NCBITaxon_4751) AnnotationAssertion(obo:UBPROP_0000012 obo:UBERON_0000105 "the WBls class 'all stages' belongs here as it is the superclass of other WBls stages") AnnotationAssertion(obo:UBPROP_0000012 obo:UBERON_0000105 "we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "BILS:0000105") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "EFO:0000399") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "FBdv:00007012") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "FMA:24120") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "HsapDv:0000000") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "MESH:D008018") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "MmusDv:0000000") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "OlatDv:0000010") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "PdumDv:0000090") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "WBls:0000002") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "XAO:1000000") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "ZFS:0000000") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "ZFS:0100000") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000105 "ncithesaurus:Developmental_Stage") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:UBERON_0000105 "developmental stage") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:UBERON_0000105 "stage") AnnotationAssertion(oboInOwl:hasOBONamespace obo:UBERON_0000105 "uberon") AnnotationAssertion(oboInOwl:id obo:UBERON_0000105 "UBERON:0000105") AnnotationAssertion(oboInOwl:inSubset obo:UBERON_0000105 ) AnnotationAssertion(oboInOwl:inSubset obo:UBERON_0000105 ) AnnotationAssertion(oboInOwl:inSubset obo:UBERON_0000105 ) AnnotationAssertion(rdfs:label obo:UBERON_0000105 "life cycle stage") SubClassOf(obo:UBERON_0000105 obo:BFO_0000003) SubClassOf(obo:UBERON_0000105 obo:BFO_0000015) # Class: obo:UBERON_0000106 (zygote stage) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000106 "A stage at which the organism is a single cell produced by means of sexual reproduction.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000106 obo:uberon.owl) AnnotationAssertion(obo:UBPROP_0000003 obo:UBERON_0000106 "As in all metazoans, eumetazoan development begins with a fertilized egg, or zygote.[well established][VHOG]") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "BILS:0000106") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "BilaDO:0000005") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "EFO:0001322") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "EHDAA:27") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "FBdv:00005288") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "IDOMAL:0000302") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "NCIT:C12601") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "PdumDv:0000100") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "VHOG:0000745") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "Wikipedia:Zygote") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "XAO:1000001") AnnotationAssertion(oboInOwl:hasDbXref obo:UBERON_0000106 "ZFS:0000001") AnnotationAssertion(oboInOwl:hasExactSynonym obo:UBERON_0000106 "1-cell stage") AnnotationAssertion(oboInOwl:hasExactSynonym obo:UBERON_0000106 "fertilized egg stage") AnnotationAssertion(oboInOwl:hasExactSynonym obo:UBERON_0000106 "one cell stage") AnnotationAssertion(oboInOwl:hasOBONamespace obo:UBERON_0000106 "uberon") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:UBERON_0000106 "fertilized egg stage") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:UBERON_0000106 "one-cell stage") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:UBERON_0000106 "zygote") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:UBERON_0000106 "zygotum") AnnotationAssertion(oboInOwl:id obo:UBERON_0000106 "UBERON:0000106") AnnotationAssertion(oboInOwl:inSubset obo:UBERON_0000106 ) AnnotationAssertion(rdfs:label obo:UBERON_0000106 "zygote stage") AnnotationAssertion(rdfs:seeAlso obo:UBERON_0000106 obo:EMAPA_16033) SubClassOf(obo:UBERON_0000106 obo:UBERON_0000105) # Class: obo:UBERON_0000160 (intestine) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000160 "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000160 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0000160 "intestine") SubClassOf(obo:UBERON_0000160 obo:UBERON_0000465) # Class: obo:UBERON_0000178 (blood) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000178 "A fluid that is composed of blood plasma and erythrocytes.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000178 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0000178 "blood") SubClassOf(obo:UBERON_0000178 obo:CARO_0000000) SubClassOf(obo:UBERON_0000178 obo:UBERON_0000465) # Class: obo:UBERON_0000465 (material anatomical entity) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0000465 "Anatomical entity that has mass.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0000465 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0000465 "material anatomical entity") SubClassOf(obo:UBERON_0000465 obo:BFO_0000040) # Class: obo:UBERON_0001044 (saliva-secreting gland) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0001044 "Saliva-secreting exocrine glands of the oral cavity[GO].") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0001044 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0001044 "saliva-secreting gland") SubClassOf(obo:UBERON_0001044 obo:UBERON_0000465) # Class: obo:UBERON_0001045 (midgut) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0001045 "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO].") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0001045 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0001045 "midgut") SubClassOf(obo:UBERON_0001045 obo:UBERON_0000465) # Class: obo:UBERON_0001046 (hindgut) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0001046 "The caudalmost subdivision of a digestive tract.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0001046 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0001046 "hindgut") SubClassOf(obo:UBERON_0001046 obo:UBERON_0000465) # Class: obo:UBERON_0001255 (urinary bladder) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0001255 "Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP].") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0001255 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0001255 "urinary bladder") SubClassOf(obo:UBERON_0001255 obo:UBERON_0000465) # Class: obo:UBERON_0001359 (cerebrospinal fluid) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0001359 "A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0001359 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0001359 "cerebrospinal fluid") SubClassOf(obo:UBERON_0001359 obo:UBERON_0000465) # Class: obo:UBERON_0002048 (lung) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0002048 "Respiration organ that develops as an outpocketing of the esophagus.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0002048 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0002048 "lung") SubClassOf(obo:UBERON_0002048 obo:UBERON_0000465) # Class: obo:UBERON_0002097 (skin of body) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0002097 "The organ covering the body that consists of the dermis and epidermis.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0002097 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0002097 "skin of body") SubClassOf(obo:UBERON_0002097 obo:UBERON_0000465) # Class: obo:UBERON_0002107 (liver) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0002107 "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0002107 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0002107 "liver") SubClassOf(obo:UBERON_0002107 obo:UBERON_0000465) # Class: obo:UBERON_0002385 (muscle tissue) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0002385 "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO].") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0002385 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0002385 "muscle tissue") SubClassOf(obo:UBERON_0002385 obo:UBERON_0000465) # Class: obo:UBERON_0005617 (mesenteric vein) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0005617 "A vein that returns blood from the intestines.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0005617 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0005617 "mesenteric vein") SubClassOf(obo:UBERON_0005617 obo:UBERON_0000465) # Class: obo:UBERON_0035944 (life-death temporal boundary) AnnotationAssertion(obo:IAO_0000115 obo:UBERON_0035944 "A life cycle temporal boundary that marks the end of the life cycle of the organism.") AnnotationAssertion(obo:IAO_0000412 obo:UBERON_0035944 obo:uberon.owl) AnnotationAssertion(rdfs:label obo:UBERON_0035944 "life-death temporal boundary") SubClassOf(obo:UBERON_0035944 obo:BFO_0000015) # Class: obo:iPIDO_0000100 (transmission blocking vaccine) AnnotationAssertion(obo:IAO_0000115 obo:iPIDO_0000100 "A vaccine that targets a parasite within a specific life stage such that parasite cannot advance into the next life stage.") AnnotationAssertion(oboInOwl:created_by obo:iPIDO_0000100 "Anthony Huffman") AnnotationAssertion(rdfs:label obo:iPIDO_0000100 "transmission blocking vaccine"@en) SubClassOf(obo:iPIDO_0000100 obo:IDO_0000561) # Class: (parasite drug) AnnotationAssertion(obo:IAO_0000115 "A drug that has a disposition to ameliorate, cure, or treat a parasite infectious disease within a host") AnnotationAssertion(oboInOwl:created_by "Anthony Huffman") AnnotationAssertion(rdfs:label "parasite drug"@en) EquivalentClasses( ObjectSomeValuesFrom(obo:RO_0000087 )) SubClassOf( obo:BFO_0000040) # Class: (parasite drug role) AnnotationAssertion(obo:IAO_0000115 "A role where a chemical entity where the chemical entity to ameliorates, cures, or treats a parasite infectious disease within a host") AnnotationAssertion(oboInOwl:created_by "Anthony Huffman") AnnotationAssertion(rdfs:label "parasite drug role"@en) SubClassOf( obo:BFO_0000023) # Class: (malaria infection) AnnotationAssertion(obo:IAO_0000115 "A parasite infection where that includes an infection-causing malaria parasite.") AnnotationAssertion(oboInOwl:created_by "Anthony Huffman") AnnotationAssertion(rdfs:label "malaria infection"@en) SubClassOf( obo:PIDO_0000011) # Class: oboInOwl:DbXref (oboInOwl:DbXref) SubClassOf(oboInOwl:DbXref obo:IAO_0000102) # Class: oboInOwl:Definition (oboInOwl:Definition) SubClassOf(oboInOwl:Definition obo:IAO_0000102) # Class: oboInOwl:ObsoleteClass (Obsolete Class) AnnotationAssertion(rdfs:label oboInOwl:ObsoleteClass "Obsolete Class") SubClassOf(oboInOwl:ObsoleteClass owl:Thing) # Class: oboInOwl:Subset (oboInOwl:Subset) EquivalentClasses(oboInOwl:Subset ObjectOneOf(obo:IAO_0000224)) SubClassOf(oboInOwl:Subset obo:IAO_0000102) # Class: oboInOwl:Synonym (oboInOwl:Synonym) SubClassOf(oboInOwl:Synonym obo:IAO_0000102) # Class: oboInOwl:SynonymType (oboInOwl:SynonymType) SubClassOf(oboInOwl:SynonymType obo:IAO_0000102) ############################ # Named Individuals ############################ # Individual: obo:IAO_0000002 (example to be eventually removed) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000002 "example to be eventually removed"@en) AnnotationAssertion(rdfs:label obo:IAO_0000002 "example to be eventually removed"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000002) # Individual: obo:IAO_0000103 (failed exploratory term) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000103 "failed exploratory term"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000103 "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000103 "Person:Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000103 "Person:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000103 "failed exploratory term"@en) ClassAssertion(obo:IAO_0000225 obo:IAO_0000103) # Individual: obo:IAO_0000120 (metadata complete) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000120 "metadata complete"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000120 "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en) AnnotationAssertion(rdfs:label obo:IAO_0000120 "metadata complete"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000120) # Individual: obo:IAO_0000121 (organizational term) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000121 "organizational term"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000121 "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000121 "term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en) AnnotationAssertion(rdfs:label obo:IAO_0000121 "organizational term"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000121) # Individual: obo:IAO_0000122 (ready for release) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000122 "ready for release"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000122 "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en) AnnotationAssertion(rdfs:label obo:IAO_0000122 "ready for release"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000122) # Individual: obo:IAO_0000123 (metadata incomplete) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000123 "metadata incomplete"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000123 "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en) AnnotationAssertion(rdfs:label obo:IAO_0000123 "metadata incomplete"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000123) # Individual: obo:IAO_0000124 (uncurated) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000124 "uncurated"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000124 "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en) AnnotationAssertion(rdfs:label obo:IAO_0000124 "uncurated"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000124) # Individual: obo:IAO_0000125 (pending final vetting) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000125 "pending final vetting"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000125 "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en) AnnotationAssertion(rdfs:label obo:IAO_0000125 "pending final vetting"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000125) # Individual: obo:IAO_0000224 (core) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000224 "Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000224 "PERSON: Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000224 "PERSON: Melanie Courtot"@en) AnnotationAssertion(obo:IAO_0000231 obo:IAO_0000224 obo:IAO_0000226) AnnotationAssertion(rdfs:label obo:IAO_0000224 "core"@en) AnnotationAssertion(rdfs:label obo:IAO_0000224 "obsolete_core"@en) AnnotationAssertion(owl:deprecated obo:IAO_0000224 "true"^^xsd:boolean) ClassAssertion(oboInOwl:Subset obo:IAO_0000224) # Individual: obo:IAO_0000226 (placeholder removed) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000226 "placeholder removed"@en) AnnotationAssertion(rdfs:label obo:IAO_0000226 "placeholder removed"@en) ClassAssertion(obo:IAO_0000225 obo:IAO_0000226) # Individual: obo:IAO_0000227 (terms merged) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000227 "terms merged"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000227 "An editor note should explain what were the merged terms and the reason for the merge."@en) AnnotationAssertion(rdfs:label obo:IAO_0000227 "terms merged"@en) ClassAssertion(obo:IAO_0000225 obo:IAO_0000227) # Individual: obo:IAO_0000228 (term imported) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000228 "term imported"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000228 "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use."@en) AnnotationAssertion(rdfs:label obo:IAO_0000228 "term imported"@en) ClassAssertion(obo:IAO_0000225 obo:IAO_0000228) # Individual: obo:IAO_0000229 (term split) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000229 "term split"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000229 "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created."@en) AnnotationAssertion(rdfs:label obo:IAO_0000229 "term split"@en) ClassAssertion(obo:IAO_0000225 obo:IAO_0000229) # Individual: obo:IAO_0000410 (universal) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000410 "universal"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000410 "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000410 "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000410 "Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000410 "Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000410 "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf") AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000410 "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf"@en) AnnotationAssertion(rdfs:label obo:IAO_0000410 "universal") AnnotationAssertion(rdfs:label obo:IAO_0000410 "universal"@en) ClassAssertion(obo:IAO_0000409 obo:IAO_0000410) # Individual: obo:IAO_0000420 (defined class) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000420 "defined class"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000420 "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000420 "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000420 "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000420 "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000420 "Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000420 "Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000420 "defined class") AnnotationAssertion(rdfs:label obo:IAO_0000420 "defined class"@en) ClassAssertion(obo:IAO_0000409 obo:IAO_0000420) # Individual: obo:IAO_0000421 (named class expression) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000421 "named class expression"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000421 "A named class expression is a logical expression that is given a name. The name can be used in place of the expression.") AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000421 "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en) AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000421 "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions") AnnotationAssertion(obo:IAO_0000116 obo:IAO_0000421 "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions"@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000421 "Alan Ruttenberg") AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000421 "Alan Ruttenberg"@en) AnnotationAssertion(rdfs:label obo:IAO_0000421 "named class expression") AnnotationAssertion(rdfs:label obo:IAO_0000421 "named class expression"@en) ClassAssertion(obo:IAO_0000409 obo:IAO_0000421) # Individual: obo:IAO_0000423 (to be replaced with external ontology term) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000423 "to be replaced with external ontology term"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000423 "Terms with this status should eventually replaced with a term from another ontology."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000423 "Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000423 "group:OBI"@en) AnnotationAssertion(rdfs:label obo:IAO_0000423 "to be replaced with external ontology term"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000423) # Individual: obo:IAO_0000428 (requires discussion) AnnotationAssertion(obo:IAO_0000111 obo:IAO_0000428 "requires discussion"@en) AnnotationAssertion(obo:IAO_0000115 obo:IAO_0000428 "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en) AnnotationAssertion(obo:IAO_0000117 obo:IAO_0000428 "Alan Ruttenberg"@en) AnnotationAssertion(obo:IAO_0000119 obo:IAO_0000428 "group:OBI"@en) AnnotationAssertion(rdfs:label obo:IAO_0000428 "requires discussion"@en) ClassAssertion(obo:IAO_0000078 obo:IAO_0000428) # Individual: obo:OMO_0001000 (out of scope) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0001000 "The term was added to the ontology on the assumption it was in scope, but it turned out later that it was not."@en) AnnotationAssertion(obo:IAO_0000116 obo:OMO_0001000 "This obsolesence reason should be used conservatively. Typical valid examples are: un-necessary grouping classes in disease ontologies, a phenotype term added on the assumption it was a disease."@en) AnnotationAssertion(obo:IAO_0000117 obo:OMO_0001000 ) AnnotationAssertion(obo:IAO_0000233 obo:OMO_0001000 "https://github.com/information-artifact-ontology/ontology-metadata/issues/77") AnnotationAssertion(obo:IAO_0000234 obo:OMO_0001000 "https://orcid.org/0000-0001-5208-3432") AnnotationAssertion(rdfs:label obo:OMO_0001000 "out of scope") ClassAssertion(obo:IAO_0000225 obo:OMO_0001000) # Individual: obo:OMO_0001002 (domain entity does not exist) AnnotationAssertion(obo:IAO_0000115 obo:OMO_0001002 "The term was added to the ontology on the assumption it was a valid domain entity, but it turns out the entity does not exist in reality."@en) AnnotationAssertion(obo:IAO_0000116 obo:OMO_0001002 "This obsolesence reason should be used conservatively. For example: Obsoleting class that describes a breed of cow based on a record in an existing database, that was later retracted as faulty (breed does not exist). Do not use this term to obsolete a historic concept (that was once valid, but not anymore). "@en) AnnotationAssertion(obo:IAO_0000117 obo:OMO_0001002 ) AnnotationAssertion(obo:IAO_0000233 obo:OMO_0001002 "https://github.com/information-artifact-ontology/ontology-metadata/issues/136") AnnotationAssertion(obo:IAO_0000234 obo:OMO_0001002 "https://orcid.org/0000-0002-4142-7153") AnnotationAssertion(rdfs:label obo:OMO_0001002 "domain entity does not exist") ClassAssertion(obo:IAO_0000225 obo:OMO_0001002) # Individual: obo:RO_0001901 (axiom holds for all times) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001901 " ## Elucidation This is used when the statement/axiom is assumed to hold true 'eternally' ## How to interpret (informal) First the \"atemporal\" FOL is derived from the OWL using the standard interpretation. This axiom is temporalized by embedding the axiom within a for-all-times quantified sentence. The t argument is added to all instantiation predicates and predicates that use this relation. ## Example Class: nucleus SubClassOf: part_of some cell forall t : forall n : instance_of(n,Nucleus,t) implies exists c : instance_of(c,Cell,t) part_of(n,c,t) ## Notes This interpretation is *not* the same as an at-all-times relation ") AnnotationAssertion(rdfs:label obo:RO_0001901 "axiom holds for all times"@en) # Individual: obo:RO_0001902 (relation has no temporal argument) AnnotationAssertion(obo:IAO_0000115 obo:RO_0001902 " ## Elucidation This is used when the first-order logic form of the relation is binary, and takes no temporal argument. ## Example: Class: limb SubClassOf: develops_from some lateral-plate-mesoderm forall t, t2: forall x : instance_of(x,Limb,t) implies exists y : instance_of(y,LPM,t2) develops_from(x,y) ") AnnotationAssertion(rdfs:label obo:RO_0001902 "relation has no temporal argument"@en) DisjointClasses(obo:BFO_0000004 obo:BFO_0000020 obo:BFO_0000031) DisjointClasses(obo:BFO_0000006 obo:BFO_0000029 obo:BFO_0000140) DisjointClasses(obo:BFO_0000008 obo:BFO_0000011 obo:BFO_0000015 obo:BFO_0000035) DisjointClasses(obo:BFO_0000009 obo:BFO_0000018 obo:BFO_0000026 obo:BFO_0000028) DisjointClasses(obo:BFO_0000142 obo:BFO_0000146 obo:BFO_0000147) DisjointClasses(obo:IDO_0000401 obo:IDO_0000402 obo:IDO_0000403) DisjointClasses(obo:IDO_0000406 obo:IDO_0000407 obo:IDO_0000453 obo:IDO_0000454 obo:IDO_0000623) DisjointClasses(obo:IDO_0000409 obo:IDO_0000410 obo:IDO_0000411 obo:IDO_0000412 obo:IDO_0000413) DisjointClasses(obo:IDO_0000449 obo:IDO_0000576 obo:IDO_0000578 obo:IDO_0000579 obo:IDO_0000580 obo:IDO_0000621) DisjointClasses(obo:IDO_0000463 obo:IDO_0000464 obo:IDO_0000466 obo:IDO_0000467 obo:IDO_0000479 obo:IDO_0000480 obo:IDO_0000481 obo:IDO_0000482 obo:IDO_0000483 obo:IDO_0000484 obo:IDO_0000485 obo:IDO_0000486 obo:IDO_0000487 obo:IDO_0000488 obo:IDO_0000489 obo:IDO_0000490 obo:IDO_0000494) DifferentIndividuals(obo:IAO_0000120 obo:IAO_0000121 obo:IAO_0000122 obo:IAO_0000123 obo:IAO_0000124 obo:IAO_0000125 obo:IAO_0000423 obo:IAO_0000428) DifferentIndividuals(obo:IAO_0000226 obo:IAO_0000227 obo:IAO_0000228 obo:IAO_0000229) SubObjectPropertyOf(ObjectPropertyChain(obo:BFO_0000050 obo:BFO_0000066) obo:BFO_0000066) SubObjectPropertyOf(ObjectPropertyChain(obo:BFO_0000066 obo:BFO_0000050) obo:BFO_0000066) DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0000053 Variable() Variable()) ClassAtom(obo:BFO_0000016 Variable()))Head(ObjectPropertyAtom(obo:RO_0000091 Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0000053 Variable() Variable()) ClassAtom(obo:BFO_0000019 Variable()))Head(ObjectPropertyAtom(obo:RO_0000086 Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0000053 Variable() Variable()) ClassAtom(obo:BFO_0000023 Variable()))Head(ObjectPropertyAtom(obo:RO_0000087 Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0000053 Variable() Variable()) ClassAtom(obo:BFO_0000034 Variable()))Head(ObjectPropertyAtom(obo:RO_0000085 Variable() Variable()))) AnnotationAssertion(obo:IAO_0000119 "Person:Alan Ruttenberg") AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000134 "To say that each spatiotemporal region s temporally_projects_onto some temporal region t is to say that t is the temporal extension of s. (axiom label in BFO2 Reference: [080-003])"@en) AnnotationAssertion(Annotation(obo:IAO_0010000 ) obo:IAO_0000600 obo:BFO_0000134 "To say that spatiotemporal region s spatially_projects_onto spatial region r at t is to say that r is the spatial extent of s at t. (axiom label in BFO2 Reference: [081-003])"@en) )