Annotation
literal: en

Annotation
literal: Gustavo Carvalho

Annotation
literal: Regina Hurley

Annotation
literal: Sebastian Deusing

Annotation
literal: Shane Babcock

Annotation
literal: Barry Smith

Annotation
literal: John Beverley

Annotation
literal: The Virus Infectious Disease Ontology (VIDO) is an extension of the Infectious Disease Ontology (IDO). VIDO follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by specific viruses and associated virus diseases. Other terms are defined as cross-products of terms from Foundry ontologies to the extent possible.

AnnotationAssertion
IRI: http://example.com/bfo-spec-label
literal: Person:Alan Ruttenberg

AnnotationAssertion
IRI: http://purl.obolibrary.org/VIDO_0001123
literal: Infectious disease inhering in a virus disorder that is a disorder due to the presence of the virus.

AnnotationAssertion
IRI: http://purl.obolibrary.org/VIDO_0001123
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/VIDO_0001123
literal: viral disease

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000075
literal: Objective specification that is realized by processes that are able or likely to stop the spread of a disease in a population.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000075
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000075
literal: infectious disease control objective specification

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000086
literal: Plan specification whose objective specification is an infectious disease control objective specification.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000086
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000086
literal: infectious disease control strategy

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000174
literal: Algorithm that models the progress of a transmissible disease in a population.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000174
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000174
literal: disease transmission model

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000229
literal: Infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000229
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000229
literal: place closure control strategy

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000230
literal: Infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000230
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000230
literal: case isolation control strategy

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000308
literal: Infectious disease control strategy that has a vector control action specification as part.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000308
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000308
literal: vector control strategy

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000327
literal: Infectious disease control strategy whereby organisms who have had contact with infectious organisms but are not symptomatic or otherwise known to be infectious are prevented from having contact with other susceptible organisms.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000327
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000327
literal: quarantine control strategy

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000541
literal: Objective specification whose endpoint is human awareness of the level of a particular disease in a particular population of a given biological taxon during some time interval.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000541
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000541
literal: disease surveillance objective specification

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000550
literal: Infectious disease control strategy that identifies and treats contacted organisms in a host population.

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000550
literal: http://purl.obolibrary.org/obo/apollo-sv.owl

AnnotationAssertion
abbreviated IRI: obo:APOLLO_SV_00000550
literal: contact tracing

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: Entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: Julius Caesar

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: Verdi’s Requiem

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: the Second World War

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: your body mass index

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/0000004
annotation:
  literal: per discussion with Barry Smith
annotation:
  IRI: http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
abbreviated IRI: obo:BFO_0000001
literal: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/001-001
abbreviated IRI: obo:BFO_0000001
literal: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000001
literal: entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
literal: continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
literal: Continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
literal: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
literal: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/0000007
abbreviated IRI: obo:BFO_0000002
literal: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/008-002
abbreviated IRI: obo:BFO_0000002
literal: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/126-001
abbreviated IRI: obo:BFO_0000002
literal: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/009-002
abbreviated IRI: obo:BFO_0000002
literal: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/011-002
abbreviated IRI: obo:BFO_0000002
literal: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/009-002
abbreviated IRI: obo:BFO_0000002
literal: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/126-001
abbreviated IRI: obo:BFO_0000002
literal: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/008-002
abbreviated IRI: obo:BFO_0000002
literal: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/011-002
abbreviated IRI: obo:BFO_0000002
literal: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000002
literal: continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000003
literal: An entity that has temporal parts and that happens, unfolds or develops through time.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000003
literal: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000003
literal: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000003
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000003
literal: occurrent

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: ic

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: IndependentContinuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: a chair

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: a heart

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: a leg

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: a molecule

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: a spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: an atom

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: an orchestra.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: an organism

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: the bottom right portion of a human torso

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: the interior of your mouth

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/017-002
abbreviated IRI: obo:BFO_0000004
literal: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/134-001
abbreviated IRI: obo:BFO_0000004
literal: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/018-002
abbreviated IRI: obo:BFO_0000004
literal: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/134-001
abbreviated IRI: obo:BFO_0000004
literal: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/018-002
abbreviated IRI: obo:BFO_0000004
literal: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/017-002
abbreviated IRI: obo:BFO_0000004
literal: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000004
literal: independent continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000006
literal: s-region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000006
literal: SpatialRegion

AnnotationAssertion
abbreviated IRI: obo:BFO_0000006
literal: BFO 2 Reference: Spatial regions do not participate in processes.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/0000002
annotation:
  literal: per discussion with Barry Smith
abbreviated IRI: obo:BFO_0000006
literal: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/035-001
abbreviated IRI: obo:BFO_0000006
literal: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/036-001
abbreviated IRI: obo:BFO_0000006
literal: All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/036-001
abbreviated IRI: obo:BFO_0000006
literal: (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/035-001
abbreviated IRI: obo:BFO_0000006
literal: (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000006
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000006
literal: spatial region

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/119-002
abbreviated IRI: obo:BFO_0000008
literal: Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000008
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000008
literal: temporal region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
literal: 2d-s-region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
literal: TwoDimensionalSpatialRegion

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
literal: an infinitely thin plane in space.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
literal: the surface of a sphere-shaped part of space

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/039-001
abbreviated IRI: obo:BFO_0000009
literal: A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/039-001
abbreviated IRI: obo:BFO_0000009
literal: (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000009
literal: two-dimensional spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000011
literal: the spatiotemporal region occupied by a human life

AnnotationAssertion
abbreviated IRI: obo:BFO_0000011
literal: the spatiotemporal region occupied by a process of cellular meiosis.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000011
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000011
literal: spatiotemporal region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: a process of cell-division, \ a beating of the heart

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: a process of meiosis

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: a process of sleeping

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: the course of a disease

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: the flight of a bird

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: the life of an organism

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: your process of aging.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/083-003
abbreviated IRI: obo:BFO_0000015
literal: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000015
literal: process

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: an atom of element X has the disposition to decay to an atom of element Y

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: certain people have a predisposition to colon cancer

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: children are innately disposed to categorize objects in certain ways.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: the cell wall is disposed to filter chemicals in endocytosis and exocytosis

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/062-002
abbreviated IRI: obo:BFO_0000016
literal: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000016
literal: disposition

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: the disposition of this piece of metal to conduct electricity.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: the disposition of your blood to coagulate

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: the function of your reproductive organs

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: the role of being a doctor

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: the role of this boundary to delineate where Utah and Colorado meet

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/058-002
abbreviated IRI: obo:BFO_0000017
literal: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000017
literal: realizable entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000018
literal: 0d-s-region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000018
literal: ZeroDimensionalSpatialRegion

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/037-001
abbreviated IRI: obo:BFO_0000018
literal: A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/037-001
abbreviated IRI: obo:BFO_0000018
literal: (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000018
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000018
literal: zero-dimensional spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the ambient temperature of this portion of air

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the color of a tomato

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the length of the circumference of your waist

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the mass of this piece of gold.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the shape of your nose

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: the shape of your nostril

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/055-001
abbreviated IRI: obo:BFO_0000019
literal: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000019
literal: quality

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the disposition of this fish to decay

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the function of this heart: to pump blood

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the mutual dependence of proton donors and acceptors in chemical reactions [79

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the pink color of a medium rare piece of grilled filet mignon at its center

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the role of being a doctor

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the shape of this hole.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: the smell of this portion of mozzarella

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/131-004
abbreviated IRI: obo:BFO_0000020
literal: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/050-003
abbreviated IRI: obo:BFO_0000020
literal: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000020
literal: specifically dependent continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the priest role

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the role of a boundary to demarcate two neighboring administrative territories

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the role of a building in serving as a military target

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the role of a stone in marking a property boundary

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the role of subject in a clinical trial

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: the student role

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/061-001
abbreviated IRI: obo:BFO_0000023
literal: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000023
literal: role

AnnotationAssertion
abbreviated IRI: obo:BFO_0000026
literal: 1d-s-region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000026
literal: OneDimensionalSpatialRegion

AnnotationAssertion
abbreviated IRI: obo:BFO_0000026
literal: an edge of a cube-shaped portion of space.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/038-001
abbreviated IRI: obo:BFO_0000026
literal: A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/038-001
abbreviated IRI: obo:BFO_0000026
literal: (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000026
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000026
literal: one-dimensional spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: object-aggregate

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: ObjectAggregate

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: a collection of cells in a blood biobank.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: a swarm of bees is an aggregate of members who are linked together through natural bonds

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: a symphony orchestra

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: defined by fiat: the aggregate of members of an organization

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: defined through physical attachment: the aggregate of atoms in a lump of granite

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: defined via attributive delimitations such as: the patients in this hospital

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: the aggregate of bearings in a constant velocity axle joint

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: the aggregate of blood cells in your body

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: the nitrogen atoms in the atmosphere

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: the restaurants in Palo Alto

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: your collection of Meissen ceramic plates.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/0000301
abbreviated IRI: obo:BFO_0000027
literal: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000027
literal: object aggregate

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
literal: 3d-s-region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
literal: ThreeDimensionalSpatialRegion

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
literal: a cube-shaped region of space

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
literal: a sphere-shaped region of space,

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/040-001
abbreviated IRI: obo:BFO_0000028
literal: A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/040-001
abbreviated IRI: obo:BFO_0000028
literal: (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000028
literal: three-dimensional spatial region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: a hole in the interior of a portion of cheese

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: a rabbit hole

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: an air traffic control region defined in the airspace above an airport

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the Grand Canyon

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the Piazza San Marco

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the cockpit of an aircraft

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the hold of a ship

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the interior of a kangaroo pouch

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the interior of your office

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the interior of your refrigerator

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: the lumen of your gut

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: your left nostril (a fiat part – the opening – of your left nasal cavity)

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/034-002
abbreviated IRI: obo:BFO_0000029
literal: b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000029
literal: site

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: atom

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: cell

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: cells and organisms

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: engineered artifacts

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: grain of sand

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: molecule

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: organelle

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: organism

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: planet

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: solid portions of matter

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: star

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: BFO 2 Reference: an object is a maximal causally unified material entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000030
literal: object

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
literal: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
literal: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
literal: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
literal: Continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/074-001
abbreviated IRI: obo:BFO_0000031
literal: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000031
literal: generically dependent continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
literal: the function of a hammer to drive in nails

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
literal: the function of a heart pacemaker to regulate the beating of a heart through electricity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
literal: the function of amylase in saliva to break down starch into sugar

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
literal: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000034
literal: function

AnnotationAssertion
abbreviated IRI: obo:BFO_0000035
literal: the boundary between the 2nd and 3rd year of your life.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/084-001
abbreviated IRI: obo:BFO_0000035
literal: p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000035
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000035
literal: process boundary

AnnotationAssertion
abbreviated IRI: obo:BFO_0000038
literal: BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).

AnnotationAssertion
abbreviated IRI: obo:BFO_0000038
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000038
literal: one-dimensional temporal region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: material

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: MaterialEntity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a flame

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a forest fire

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a human being

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a hurricane

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a photon

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a puff of smoke

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a sea wave

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: a tornado

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: an aggregate of human beings.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: an energy wave

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: an epidemic

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: the undetached arm of a human being

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/019-002
abbreviated IRI: obo:BFO_0000040
literal: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/020-002
abbreviated IRI: obo:BFO_0000040
literal: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/021-002
abbreviated IRI: obo:BFO_0000040
literal: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/019-002
abbreviated IRI: obo:BFO_0000040
literal: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/021-002
abbreviated IRI: obo:BFO_0000040
literal: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/020-002
abbreviated IRI: obo:BFO_0000040
literal: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000040
literal: material entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: is part of

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: my brain is part of my body (continuant parthood, two material entities)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: this day is part of this year (occurrent parthood)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: a core relation that holds between a part and its whole

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: part_of

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: part of

AnnotationAssertion
abbreviated IRI: obo:BFO_0000050
literal: http://www.obofoundry.org/ro/#OBO_REL:part_of

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: has part

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: my body has part my brain (continuant parthood, two material entities)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: this year has part this day (occurrent parthood)

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: a core relation that holds between a whole and its part

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: has_part

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:BFO_0000051
literal: has part

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: realized in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: this disease is realized in this disease course

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: this fragility is realized in this shattering

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: this investigator role is realized in this investigation

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: is realized by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: realized_in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000054
literal: realized in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: realizes

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: this disease course realizes this disease

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: this investigation realizes this investigator role

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: this shattering realizes this fragility

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000055
literal: realizes

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: preceded by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: is preceded by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: preceded_by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: http://www.obofoundry.org/ro/#OBO_REL:preceded_by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000062
literal: preceded by

AnnotationAssertion
abbreviated IRI: obo:BFO_0000063
literal: precedes

AnnotationAssertion
abbreviated IRI: obo:BFO_0000063
literal: precedes

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: occurs in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: occurs_in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: unfolds in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: unfolds_in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000066
literal: occurs in

AnnotationAssertion
abbreviated IRI: obo:BFO_0000067
literal: site of

AnnotationAssertion
abbreviated IRI: obo:BFO_0000067
literal: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t

AnnotationAssertion
abbreviated IRI: obo:BFO_0000067
literal: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

AnnotationAssertion
abbreviated IRI: obo:BFO_0000067
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000067
literal: contains process

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/080-003
abbreviated IRI: obo:BFO_0000134
literal: To say that each spatiotemporal region s temporally_projects_onto some temporal region t is to say that t is the temporal extension of s. (axiom label in BFO2 Reference: [080-003])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/081-003
abbreviated IRI: obo:BFO_0000134
literal: To say that spatiotemporal region s spatially_projects_onto spatial region r at t is to say that r is the spatial extent of s at t. (axiom label in BFO2 Reference: [081-003])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000141
literal: immaterial

AnnotationAssertion
abbreviated IRI: obo:BFO_0000141
literal: ImmaterialEntity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000141
literal: BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10

AnnotationAssertion
abbreviated IRI: obo:BFO_0000141
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000141
literal: immaterial entity

AnnotationAssertion
abbreviated IRI: obo:BFO_0000144
literal: On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels

AnnotationAssertion
abbreviated IRI: obo:BFO_0000144
literal: One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000144
literal: The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/093-002
abbreviated IRI: obo:BFO_0000144
literal: b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000144
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000144
literal: process profile

AnnotationAssertion
abbreviated IRI: obo:BFO_0000148
literal: the moment at which a child is born

AnnotationAssertion
abbreviated IRI: obo:BFO_0000148
literal: the moment at which a finger is detached in an industrial accident

AnnotationAssertion
abbreviated IRI: obo:BFO_0000148
literal: the moment of death.

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/102-001
abbreviated IRI: obo:BFO_0000148
literal: A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/102-001
abbreviated IRI: obo:BFO_0000148
literal: (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]

AnnotationAssertion
abbreviated IRI: obo:BFO_0000148
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000148
literal: zero-dimensional temporal region

AnnotationAssertion
abbreviated IRI: obo:BFO_0000179
literal: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.

AnnotationAssertion
abbreviated IRI: obo:BFO_0000179
literal: Really of interest to developers only

AnnotationAssertion
abbreviated IRI: obo:BFO_0000179
literal: BFO OWL specification label

AnnotationAssertion
abbreviated IRI: obo:BFO_0000180
literal: Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2

AnnotationAssertion
abbreviated IRI: obo:BFO_0000180
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:BFO_0000180
literal: Really of interest to developers only

AnnotationAssertion
abbreviated IRI: obo:BFO_0000180
literal: BFO CLIF specification label

AnnotationAssertion
annotation:
  IRI: http://purl.obolibrary.org/obo/bfo/axiom/138-001
abbreviated IRI: obo:BFO_0000182
literal: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])

AnnotationAssertion
abbreviated IRI: obo:BFO_0000182
abbreviated IRI: obo:bfo.owl

AnnotationAssertion
abbreviated IRI: obo:BFO_0000182
literal: history

AnnotationAssertion
abbreviated IRI: obo:BFO_999999
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:BFO_999999
literal: Not sure if this has an IRI yet, so I supplied a placeholder.

AnnotationAssertion
abbreviated IRI: obo:BFO_999999
literal: occupies temporal region

AnnotationAssertion
abbreviated IRI: obo:CARO_0000000
literal: Material entity part of or substance produced by a multicellular organism with granularity above the level of a protein complex.

AnnotationAssertion
abbreviated IRI: obo:CARO_0000000
literal: Anatomical entities - like other material entities - may have immaterial parts.

AnnotationAssertion
abbreviated IRI: obo:CARO_0000000
abbreviated IRI: obo:caro.owl

AnnotationAssertion
abbreviated IRI: obo:CARO_0000000
literal: anatomical entity

AnnotationAssertion
abbreviated IRI: obo:CHEBI_16991
literal: Nucleic acid composed of nucleotides containing deoxyribose and linked by phosphodiester bonds.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_16991
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_16991
literal: deoxyribonucleic acid

AnnotationAssertion
abbreviated IRI: obo:CHEBI_23367
literal: Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_23367
abbreviated IRI: obo:chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_23367
literal: molecular entity

AnnotationAssertion
abbreviated IRI: obo:CHEBI_24432
literal: Role inhering in a molecular entity or part of that entity, realized in biological processes.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_24432
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_24432
literal: biological role

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33696
literal: Macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33696
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33696
literal: nucleic acid

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33697
literal: Nucleic acid composed of nucleotides containing ribose and linked by phosphodiester bonds.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33697
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33697
literal: ribonucleic acid

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33839
literal: Molecular entity of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33839
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_33839
literal: macromolecule

AnnotationAssertion
abbreviated IRI: obo:CHEBI_36080
literal: Biological macromolecule consisting of one polypeptide chain synthesized at the ribosome.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_36080
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_36080
literal: protein

AnnotationAssertion
abbreviated IRI: obo:CHEBI_4705
literal: DNA consisting of two parallel strands joined by hydrogen bonds between complementary purines and pyrimidines.

AnnotationAssertion
abbreviated IRI: obo:CHEBI_4705
literal: http://purl.obolibrary.org/obo/chebi.owl

AnnotationAssertion
abbreviated IRI: obo:CHEBI_4705
literal: double-stranded DNA

AnnotationAssertion
abbreviated IRI: obo:CL_0000000
literal: Material entity that is part of or derived from an organism, with maximally connected cell compartments surrounded by a plasma membrane.

AnnotationAssertion
abbreviated IRI: obo:CL_0000000
literal: This should be an inferred subclass of BFO:object. -John

AnnotationAssertion
abbreviated IRI: obo:CL_0000000
abbreviated IRI: obo:cl.owl

AnnotationAssertion
abbreviated IRI: obo:CL_0000000
literal: cell

AnnotationAssertion
abbreviated IRI: obo:ERO_0000006
literal: Processed material bearing a reagent role.

AnnotationAssertion
abbreviated IRI: obo:ERO_0000006
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0000006
literal: reagent

AnnotationAssertion
abbreviated IRI: obo:ERO_0000008
literal: Reagent that is comprised of immunoglobulins produced by B cells in response to an antigen.

AnnotationAssertion
abbreviated IRI: obo:ERO_0000008
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0000008
literal: antibody reagent

AnnotationAssertion
abbreviated IRI: obo:ERO_0000337
literal: Assay used to determine viral titers.

AnnotationAssertion
abbreviated IRI: obo:ERO_0000337
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0000337
literal: viral plaque assay

AnnotationAssertion
abbreviated IRI: obo:ERO_0000347
literal: Planned process used to influence one or more factors in a research study, and the independent variable in an interventional study wherein the influence is measured or evaluated.

AnnotationAssertion
abbreviated IRI: obo:ERO_0000347
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0000347
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:ERO_0000347
literal: intervention

AnnotationAssertion
abbreviated IRI: obo:ERO_0000671
literal: Assay analyzing blood serum and other bodily fluids, to detect the presence of serum antibodies.

AnnotationAssertion
abbreviated IRI: obo:ERO_0000671
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0000671
literal: serology assay

AnnotationAssertion
abbreviated IRI: obo:ERO_0001362
literal: Assay measuring the concentration of a substance in a material by exploiting binding between an analyte and a corresponding detection antibody.

AnnotationAssertion
abbreviated IRI: obo:ERO_0001362
literal: http://purl.obolibrary.org/obo/ero.owl

AnnotationAssertion
abbreviated IRI: obo:ERO_0001362
literal: immunoassay

AnnotationAssertion
abbreviated IRI: obo:FBdv_00005259
literal: Temporal subdivision of a developmental process.

AnnotationAssertion
abbreviated IRI: obo:FBdv_00005259
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:FBdv_00005259
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:FBdv_00005259
literal: generative stage

AnnotationAssertion
abbreviated IRI: obo:GEO_000000370
literal: Material entity that is (1) a bona fide or fiat object part of the crust, any bodies of liquid on or contained within the crust, or planetary boundary layer (if present) of a terrestrial planet (including Earth), dwarf planet, exoplanet, natural satellite, planetesimal, or small Solar System body, and that (2) overlaps the planetary surface (including having a boundary that coincides with part of the planetary surface).

AnnotationAssertion
abbreviated IRI: obo:GEO_000000370
literal: http://purl.obolibrary.org/obo/GEO

AnnotationAssertion
abbreviated IRI: obo:GEO_000000370
literal: geographical entity

AnnotationAssertion
abbreviated IRI: obo:GEO_000000371
literal: Geographical entity that has at least one bona fide boundary.

AnnotationAssertion
abbreviated IRI: obo:GEO_000000371
literal: http://purl.obolibrary.org/obo/GEO

AnnotationAssertion
abbreviated IRI: obo:GEO_000000371
literal: geographical feature

AnnotationAssertion
abbreviated IRI: obo:GEO_000000372
literal: Geographical entity that is demarcated at least in part by one or more closed fiat boundaries all of whose lines are part of the planetary surface.

AnnotationAssertion
abbreviated IRI: obo:GEO_000000372
literal: http://purl.obolibrary.org/obo/GEO

AnnotationAssertion
abbreviated IRI: obo:GEO_000000372
literal: geographical region

AnnotationAssertion
abbreviated IRI: obo:GO_0002250
literal: Immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).

AnnotationAssertion
abbreviated IRI: obo:GO_0002250
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0002250
literal: adaptive immune response

AnnotationAssertion
abbreviated IRI: obo:GO_0002443
literal: Process involved in the carrying out of an immune response by a leukocyte.

AnnotationAssertion
abbreviated IRI: obo:GO_0002443
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0002443
literal: leukocyte mediated immunity

AnnotationAssertion
abbreviated IRI: obo:GO_0006955
literal: Immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.

AnnotationAssertion
abbreviated IRI: obo:GO_0006955
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0006955
literal: immune response

AnnotationAssertion
abbreviated IRI: obo:GO_0006959
literal: Immune response mediated through a body fluid.

AnnotationAssertion
abbreviated IRI: obo:GO_0006959
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0006959
literal: humoral immune response

AnnotationAssertion
abbreviated IRI: obo:GO_0008150
literal: Process specifically pertinent to the functioning of functionally integrated units.

AnnotationAssertion
abbreviated IRI: obo:GO_0008150
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0008150
literal: biological process

AnnotationAssertion
abbreviated IRI: obo:GO_0019028
literal: Protein surrounding virion nucleic acid in some virus particles.

AnnotationAssertion
abbreviated IRI: obo:GO_0019028
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019028
literal: viral capsid

AnnotationAssertion
abbreviated IRI: obo:GO_0019031
literal: Macromolecule lipid bilayer of a virion surrounding capsid.

AnnotationAssertion
abbreviated IRI: obo:GO_0019031
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019031
literal: viral envelope

AnnotationAssertion
abbreviated IRI: obo:GO_0019061
literal: Virus generative stage during which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.

AnnotationAssertion
abbreviated IRI: obo:GO_0019061
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019061
literal: virus uncoating stage

AnnotationAssertion
abbreviated IRI: obo:GO_0019062
literal: Virus generative stage during which a virion protein binds to molecules on the host surface or host cell surface projection.

AnnotationAssertion
abbreviated IRI: obo:GO_0019062
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019062
literal: virus attachment stage

AnnotationAssertion
abbreviated IRI: obo:GO_0019068
literal: Virus developmental stage during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.

AnnotationAssertion
abbreviated IRI: obo:GO_0019068
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019068
literal: virus synthesis stage

AnnotationAssertion
abbreviated IRI: obo:GO_0019081
literal: Virus generative stage during which viral mRNA is translated into viral protein, using the host cellular machinery.

AnnotationAssertion
abbreviated IRI: obo:GO_0019081
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019081
literal: virus translation stage

AnnotationAssertion
abbreviated IRI: obo:GO_0019083
literal: Virus developmental stage during which a viral genome, or part of a viral genome, is transcribed within the host cell.

AnnotationAssertion
abbreviated IRI: obo:GO_0019083
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019083
literal: virus transcription stage

AnnotationAssertion
abbreviated IRI: obo:GO_0019814
literal: Protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.

AnnotationAssertion
abbreviated IRI: obo:GO_0019814
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019814
literal: immunoglobulin complex

AnnotationAssertion
abbreviated IRI: obo:GO_0019815
literal: Immunoglobulin complex present in the plasma membrane of B cells and that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.

AnnotationAssertion
abbreviated IRI: obo:GO_0019815
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0019815
literal: B cell receptor complex

AnnotationAssertion
abbreviated IRI: obo:GO_0032502
literal: Biological process whose specific outcome is the progression of a functional, integrated, unit.

AnnotationAssertion
abbreviated IRI: obo:GO_0032502
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0032502
literal: developmental process

AnnotationAssertion
abbreviated IRI: obo:GO_0032991
literal: Stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.

AnnotationAssertion
abbreviated IRI: obo:GO_0032991
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0032991
literal: macromolecular complex

AnnotationAssertion
abbreviated IRI: obo:GO_0042101
literal: Protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains.

AnnotationAssertion
abbreviated IRI: obo:GO_0042101
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0042101
literal: T cell receptor complex

AnnotationAssertion
abbreviated IRI: obo:GO_0044403
literal: Process carried out by gene products in an organism or acellular structure that enables the entity to engage in a symbiotic relationship with an organism.

AnnotationAssertion
abbreviated IRI: obo:GO_0044403
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:GO_0044403
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0044403
literal: symbiotic process

AnnotationAssertion
abbreviated IRI: obo:GO_0044406
literal: Attachment of a symbiont to its host via adhesion molecules, general stickiness etc., either directly or indirectly.

AnnotationAssertion
abbreviated IRI: obo:GO_0044406
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0044406
literal: adhesion of symbiont to host

AnnotationAssertion
abbreviated IRI: obo:GO_0044409
literal: Penetration by an organism into the body, tissues, or cells of the host organism.

AnnotationAssertion
abbreviated IRI: obo:GO_0044409
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0044409
literal: entry into host

AnnotationAssertion
abbreviated IRI: obo:GO_0044411
literal: Penetration by an organism into its host organism via active breaching of the physical barriers of the host organism.

AnnotationAssertion
abbreviated IRI: obo:GO_0044411
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0044411
literal: entry into host through host barriers

AnnotationAssertion
abbreviated IRI: obo:GO_0045087
literal: Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

AnnotationAssertion
abbreviated IRI: obo:GO_0045087
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0045087
literal: innate immune response

AnnotationAssertion
abbreviated IRI: obo:GO_0046718
literal: Virus generative stage during which a virion or viral nucleic acid breaches the barriers of a host.

AnnotationAssertion
abbreviated IRI: obo:GO_0046718
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0046718
literal: virus penetration stage

AnnotationAssertion
abbreviated IRI: obo:GO_0046727
literal: Protein subunit comprising viral capsid.

AnnotationAssertion
abbreviated IRI: obo:GO_0046727
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0046727
literal: capsomere

AnnotationAssertion
abbreviated IRI: obo:GO_0048519
literal: Process that stops, prevents, or reduces the frequency, rate or extent of a biological process.

AnnotationAssertion
abbreviated IRI: obo:GO_0048519
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0048519
literal: negative regulation of biological process

AnnotationAssertion
abbreviated IRI: obo:GO_0048525
literal: Process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.

AnnotationAssertion
abbreviated IRI: obo:GO_0048525
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0048525
literal: negative regulation of viral process

AnnotationAssertion
abbreviated IRI: obo:GO_0050777
literal: Process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.

AnnotationAssertion
abbreviated IRI: obo:GO_0050777
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0050777
literal: negative regulation of immune response

AnnotationAssertion
abbreviated IRI: obo:GO_0051093
literal: Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

AnnotationAssertion
abbreviated IRI: obo:GO_0051093
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0051093
literal: negative regulation of developmental process

AnnotationAssertion
abbreviated IRI: obo:GO_0051234
literal: Process that localizes a substance or cellular component via movement, tethering or selective degradation.

AnnotationAssertion
abbreviated IRI: obo:GO_0051234
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0051234
literal: establishment of localization

AnnotationAssertion
abbreviated IRI: obo:GO_0065007
literal: Process that modulates a measurable attribute of any biological process, quality or function.

AnnotationAssertion
abbreviated IRI: obo:GO_0065007
abbreviated IRI: obo:go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_0065007
literal: biological regulation

AnnotationAssertion
abbreviated IRI: obo:GO_19076
literal: Virus generative stage involving dissemination of mature virus particles from the host cell, by cell lysis or the budding of virus particles from the cell membrane.

AnnotationAssertion
abbreviated IRI: obo:GO_19076
literal: http://purl.obolibrary.org/obo/go.owl

AnnotationAssertion
abbreviated IRI: obo:GO_19076
literal: virus release stage

AnnotationAssertion
abbreviated IRI: obo:IAO_0000002
literal: example to be eventually removed

AnnotationAssertion
abbreviated IRI: obo:IAO_0000005
literal: Directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000005
literal: http://purl.obolibrary.org/obo/iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000005
literal: objective specification

AnnotationAssertion
abbreviated IRI: obo:IAO_0000007
literal: Directive information entity that describes an action the bearer will take

AnnotationAssertion
abbreviated IRI: obo:IAO_0000007
literal: http://purl.obolibrary.org/obo/iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000007
literal: action specification

AnnotationAssertion
abbreviated IRI: obo:IAO_0000030
literal: information content entity

AnnotationAssertion
abbreviated IRI: obo:IAO_0000064
literal: Plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000064
literal: http://purl.obolibrary.org/obo/iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000064
literal: algorithm

AnnotationAssertion
abbreviated IRI: obo:IAO_0000103
literal: The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job

AnnotationAssertion
abbreviated IRI: obo:IAO_0000103
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000103
literal: failed exploratory term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000104
literal: Directive information entity that when concretized it is realized in a process in which the bearer tries to achieve the objectives, in part by taking the actions specified. Plan specifications includes parts such as objective specification, action specifications and conditional specifications.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000104
literal: http://purl.obolibrary.org/obo/iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000104
literal: plan specification

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
literal: editor preferred term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
literal: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000111
literal: editor preferred term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
literal: example

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
literal: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000112
literal: example of usage

AnnotationAssertion
abbreviated IRI: obo:IAO_0000113
literal: in branch

AnnotationAssertion
abbreviated IRI: obo:IAO_0000113
literal: An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000113
literal: GROUP:OBI

AnnotationAssertion
abbreviated IRI: obo:IAO_0000113
literal: OBI_0000277

AnnotationAssertion
abbreviated IRI: obo:IAO_0000113
literal: in branch

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: has curation status

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: PERSON:Bill Bug

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: PERSON:Melanie Courtot

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: OBI_0000281

AnnotationAssertion
abbreviated IRI: obo:IAO_0000114
literal: has curation status

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: definition

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: definition

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: definition

AnnotationAssertion
abbreviated IRI: obo:IAO_0000115
literal: textual definition

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
literal: editor note

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
literal: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
literal: GROUP:OBI:<http://purl.obfoundry.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000116
literal: editor note

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: term editor

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000117
literal: term editor

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
literal: alternative term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
literal: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000118
literal: alternative term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: definition source

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: PERSON:Daniel Schober

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000119
literal: definition source

AnnotationAssertion
abbreviated IRI: obo:IAO_0000120
literal: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000120
literal: metadata complete

AnnotationAssertion
abbreviated IRI: obo:IAO_0000121
literal: term created to ease viewing/sort terms for development purpose, and will not be included in a release

AnnotationAssertion
abbreviated IRI: obo:IAO_0000121
literal: organizational term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000122
literal: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."

AnnotationAssertion
abbreviated IRI: obo:IAO_0000122
literal: ready for release

AnnotationAssertion
abbreviated IRI: obo:IAO_0000123
literal: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000123
literal: metadata incomplete

AnnotationAssertion
abbreviated IRI: obo:IAO_0000124
literal: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000124
literal: uncurated

AnnotationAssertion
abbreviated IRI: obo:IAO_0000125
literal: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000125
literal: pending final vetting

AnnotationAssertion
abbreviated IRI: obo:IAO_0000224
literal: Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000224
literal: PERSON: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000224
literal: PERSON: Melanie Courtot

AnnotationAssertion
abbreviated IRI: obo:IAO_0000224
literal: core

AnnotationAssertion
abbreviated IRI: obo:IAO_0000226
literal: placeholder removed

AnnotationAssertion
abbreviated IRI: obo:IAO_0000227
literal: An editor note should explain what were the merged terms and the reason for the merge.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000227
literal: terms merged

AnnotationAssertion
abbreviated IRI: obo:IAO_0000228
literal: This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000228
literal: term imported

AnnotationAssertion
abbreviated IRI: obo:IAO_0000229
literal: This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000229
literal: term split

AnnotationAssertion
abbreviated IRI: obo:IAO_0000231
literal: has obsolescence reason

AnnotationAssertion
abbreviated IRI: obo:IAO_0000231
literal: Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000231
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000231
literal: PERSON:Melanie Courtot

AnnotationAssertion
abbreviated IRI: obo:IAO_0000231
literal: has obsolescence reason

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
literal: curator note

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
abbreviated IRI: obo:IAO_0000122

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
literal: An administrative note of use for a curator but of no use for a user

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000232
literal: curator note

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: term tracker item

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: An IRI or similar locator for a request or discussion of an ontology term.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: The 'tracker item' can associate a tracker with a specific ontology term.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000233
literal: term tracker item

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
literal: The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
literal: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
literal: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
literal: The 'term requester' can credit the person, organization or project who request the ontology term.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000234
literal: ontology term requester

AnnotationAssertion
abbreviated IRI: obo:IAO_0000410
literal: Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000410
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000410
literal: A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf

AnnotationAssertion
abbreviated IRI: obo:IAO_0000410
literal: universal

AnnotationAssertion
abbreviated IRI: obo:IAO_0000411
literal: is denotator type

AnnotationAssertion
abbreviated IRI: obo:IAO_0000411
literal: relates an class defined in an ontology, to the type of it's denotator

AnnotationAssertion
abbreviated IRI: obo:IAO_0000411
literal: In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')

AnnotationAssertion
abbreviated IRI: obo:IAO_0000411
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000411
literal: is denotator type

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: imported from

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: For external terms/classes, the ontology from which the term was imported

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: PERSON:Melanie Courtot

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000412
literal: imported from

AnnotationAssertion
abbreviated IRI: obo:IAO_0000420
literal: A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal

AnnotationAssertion
abbreviated IRI: obo:IAO_0000420
literal: "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000420
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000420
literal: defined class

AnnotationAssertion
abbreviated IRI: obo:IAO_0000421
literal: A named class expression is a logical expression that is given a name. The name can be used in place of the expression.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000421
literal: named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions

AnnotationAssertion
abbreviated IRI: obo:IAO_0000421
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000421
literal: named class expression

AnnotationAssertion
abbreviated IRI: obo:IAO_0000423
literal: Terms with this status should eventually replaced with a term from another ontology.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000423
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000423
literal: group:OBI

AnnotationAssertion
abbreviated IRI: obo:IAO_0000423
literal: to be replaced with external ontology term

AnnotationAssertion
abbreviated IRI: obo:IAO_0000424
literal: expand expression to

AnnotationAssertion
abbreviated IRI: obo:IAO_0000424
literal: ObjectProperty: RO_0002104 Label: has plasma membrane part Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000424
literal: A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones

AnnotationAssertion
abbreviated IRI: obo:IAO_0000424
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:IAO_0000424
literal: expand expression to

AnnotationAssertion
abbreviated IRI: obo:IAO_0000425
literal: expand assertion to

AnnotationAssertion
abbreviated IRI: obo:IAO_0000425
literal: ObjectProperty: RO??? Label: spatially disjoint from Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000425
literal: A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000425
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:IAO_0000425
literal: expand assertion to

AnnotationAssertion
abbreviated IRI: obo:IAO_0000426
literal: first order logic expression

AnnotationAssertion
abbreviated IRI: obo:IAO_0000426
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000426
literal: first order logic expression

AnnotationAssertion
abbreviated IRI: obo:IAO_0000427
literal: antisymmetric property

AnnotationAssertion
abbreviated IRI: obo:IAO_0000427
literal: part_of antisymmetric property xsd:true

AnnotationAssertion
abbreviated IRI: obo:IAO_0000427
literal: use boolean value xsd:true to indicate that the property is an antisymmetric property

AnnotationAssertion
abbreviated IRI: obo:IAO_0000427
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000427
literal: antisymmetric property

AnnotationAssertion
abbreviated IRI: obo:IAO_0000428
literal: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000428
literal: Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000428
literal: group:OBI

AnnotationAssertion
abbreviated IRI: obo:IAO_0000428
literal: requires discussion

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: OBO foundry unique label

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: An alternative name for a class or property which is unique across the OBO Foundry.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: PERSON:Bjoern Peters

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: PERSON:Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: PERSON:Melanie Courtot

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: GROUP:OBO Foundry <http://obofoundry.org/>

AnnotationAssertion
abbreviated IRI: obo:IAO_0000589
literal: OBO foundry unique label

AnnotationAssertion
abbreviated IRI: obo:IAO_0000596
literal: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000596
literal: Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000596
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000596
literal: has ID digit count

AnnotationAssertion
abbreviated IRI: obo:IAO_0000597
literal: Datatype: idrange:1 Annotations: 'has ID range allocated to': "Chris Mungall" EquivalentTo: xsd:integer[> 2151 , <= 2300]

AnnotationAssertion
abbreviated IRI: obo:IAO_0000597
literal: Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms

AnnotationAssertion
abbreviated IRI: obo:IAO_0000597
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000597
literal: has ID range allocated to

AnnotationAssertion
abbreviated IRI: obo:IAO_0000598
literal: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000598
literal: Relating an ontology used to record id policy to the ontology namespace whose policy it manages

AnnotationAssertion
abbreviated IRI: obo:IAO_0000598
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000598
literal: has ID policy for

AnnotationAssertion
abbreviated IRI: obo:IAO_0000599
literal: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000599
literal: Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created.

AnnotationAssertion
abbreviated IRI: obo:IAO_0000599
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000599
literal: has ID prefix

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
literal: elucidation

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
literal: person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
literal: Person:Barry Smith

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
literal: Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000600
literal: elucidation

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
literal: has associated axiom(nl)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
literal: An axiom associated with a term expressed using natural language

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000601
literal: has associated axiom(nl)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
literal: has associated axiom(fol)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
literal: An axiom expressed in first order logic using CLIF syntax

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0000602
literal: has associated axiom(fol)

AnnotationAssertion
abbreviated IRI: obo:IAO_0000603
literal: is allocated id range

AnnotationAssertion
abbreviated IRI: obo:IAO_0000603
literal: Add as annotation triples in the granting ontology

AnnotationAssertion
abbreviated IRI: obo:IAO_0000603
literal: Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999"

AnnotationAssertion
abbreviated IRI: obo:IAO_0000603
literal: PERSON:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0000603
literal: is allocated id range

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
literal: has axiom id

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
literal: A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
abbreviated IRI: obo:iao.owl

AnnotationAssertion
abbreviated IRI: obo:IAO_0010000
literal: has axiom label

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: term replaced by

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: Add as annotation triples in the granting ontology

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: Use on obsolete terms, relating the term to another term that can be used as a substitute

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: Person:Alan Ruttenberg

AnnotationAssertion
abbreviated IRI: obo:IAO_0100001
literal: term replaced by

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001287
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001287
literal: SARS-COV-2 Infection

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001301
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001301
literal: United States

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001302
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001302
literal: Canada

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001362
literal: Virus which infects and replicates within or on fungi.

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001362
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001362
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO-COVID-19_0001362
literal: mycovirus

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: A role borne by an organism in symbiosis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000400
literal: symbiont role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: Symbiont role borne by an organism in which both symbionts derive a growth, survival, or fitness advantage from symbiosis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000401
literal: mutualist role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: Symbiont role borne by an organism that derives a growth, survival, or fitness advantage from symbiosis, while the other symbiont is neither advantaged nor disadvantaged.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000402
literal: commensal role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: Symbiont role borne by an organism that derives a growth, survival, or fitness advantage from symbiosis while the other symbiont's growth, survival, or fitness is reduced.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000403
literal: parasite role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: Infectious disposition to become part of a disorder only in organisms whose defenses are compromised.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000406
literal: opportunistic infectious disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: Infectious disposition to become part of a disorder in immunocompetent organisms.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: A pathogen with a primary infectious disposition can cause disease or death in both immunocompromised and immunocompetent hosts.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000407
literal: primary infectious disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: Host role borne by an organism whose extended organism provides an environment supportive for the survival, growth, maturation, or reproduction of an object contained as a proper part.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000408
literal: symbiont host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: Symbiont host role borne by an organism iwhose partner in symbiosis reaches developmental maturity or reproduces sexually in the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000409
literal: definitive host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: Symbiont host role borne by an organism whose partner in symbiosis utilizes the host to undergo a developmental stage transition, and the host is required for continuation of the partner's life cycle.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000410
literal: intermediate host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: Symbiont host role borne by an organism whose partner in symbiosis has the infectious disposition but cannot be transmitted from the host to the partner's definitive host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000412
literal: dead-end host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: Pathogen host role borne by an organism whose extended organism contains an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000414
literal: infectious agent host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: Host role borne by an organism or acellular structure having a pathogen as part.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000415
literal: pathogen host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: A pathogen vector role borne by an organism in virtue of the fact that the pathogen does not multiply in or on the vector.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: passive carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0000419
literal: mechanical vector role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000420
literal: A pathogen vector role borne by an organism in virtue of the fact that the pathogen multiplies in the vector.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000420
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000420
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000420
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000420
literal: biological vector role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: A pathogen transporter role borne by an entity in virtue of the fact that the entity is not a complete organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: I don't understand the rdfs comment indicating drinking water bears the infected agent vehicle role, but neither of the subtypes. Presumably, if an infectious agent is present in drinking water, then it bears a fomite role. Drinking water is, in fact, a classic example. -John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: I've expanded this definition and label to cover infectious agent pathogens and infectious structure pathogens. -John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: Drinking water bears the infectious agent vehicle role, but does not bear either of the subtype roles.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000421
literal: pathogen vehicle role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: A pathogen vehicle role borne by an entity in virtue of the fact that the entity is living or contains living cells other than those that have the infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: Examples include blood, serum, tissue, or fresh produce.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000422
literal: biological vehicle role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000423
literal: An infectious agent vehicle role borne by an entity in virtue of the fact that the entity is not alive.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000423
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000423
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000423
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000423
literal: fomite role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: Role borne by a material entity in which pathogens can persist, and from which they can be transmitted to hosts.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000424
literal: reservoir of pathogen role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: Disposition borne by a biological macromolecule produced by a pathogen that is a disposition to undergo processes that increase the pathogen's virulence.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: The virulence factor disposition is typically realized in processes that improve survival of the pathogen in a host, increase the likelihood of transmission to a host, or cause pathological processes in a host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000425
literal: virulence factor disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: Disposition to cause I) malfunction of cells, ii) damage to extracellular matrix, or iii) damage of cells to a degree that can result in cell death.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000426
literal: toxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: Toxin disposition to damage cells or extracellular matrix by a direct enzymatic process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000427
literal: exotoxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: Role borne by an anatomical entity that serves as the site through which a pathogen enters a host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000430
literal: pathogen portal of entry role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: Role borne by an anatomical entity that serves as the site through which a pathogen exits a host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000431
literal: pathogen portal of exit role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: Role borne by an infectious disorder whose host has another, distinct, infectious disorder - neither arising from the other through metastasis - which emerged after this infectious disorder was established due to increased host susceptibility to infectious disorders.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000434
literal: primary infection role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000435
literal: Role borne by an infectious disorder whose host has another, distinct, primary infectious disorder - neither arising from the other through metastasis - which emerged after the primary infectious disorder was established due to increased host susceptibility to infectious disorders.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000435
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000435
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000435
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000435
literal: secondary infection role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: Disease whose physical basis is an infectious disorder.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: tranmissible disease

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000436
literal: infectious disease

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: Disposition borne by a macromolecule that is the disposition to participate in adherence to a host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000437
literal: adhesion disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: Disposition borne by a biological macromolecule that is the disposition to facilitate breach of and entry through host barriers.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: Invasion factor; invasin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000438
literal: invasion disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: Disposition inhering in an acellular structure or organism, with a part having a disposition to mitigate damage to the entity from invasive or internal threats, which is realized in one or more negative biological regulation process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: Examples include the following: CCR5 mutations protect T cells from HIV invasion. A tumor cell's resistance to chemotherapy protects the cell from damage by the drug (although this harms the patient). An insect's resistance to insecticide protects it from the insecticide.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000444
literal: protective resistance

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: Protective resistance that mitigates the damaging effects of a drug.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000445
literal: resistance to drug

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: Protective resistance that inheres in an organism and mitigates the damaging effects of a pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000446
literal: resistance to pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: Collective resistance disposition that inheres in an organism population where the proportion of the population with immunity to an infectious agent is high resulting in a low number of transmissions from hosts to susceptible individuals.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000447
literal: herd immunity to infectious organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: Resistance to pathogen that inheres in an organism due to immune system components in its extended organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000448
literal: immunity to pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: Immunity to pathogen that results in elimination of the infectious agent from the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: Sterilizing immunity is typically conferred by neutralizing antibodies.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000449
literal: sterilizing immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: Disposition borne by a material entity to establish localization in or produce toxins that can be transmitted to an organism or acellular structure, either of which may form disorder in the entity or immunocompetent members of the entity’s species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: pathogenicity

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000450
literal: pathogenic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: Disposition borne by a pathogen that is the disposition to penetrate the epithelial barriers of an organism of another species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000451
literal: invasive disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: Infectious disposition to be transmitted from an infected, non-human host to a human host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000453
literal: zoonotic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: Infectious disposition to be transmitted from an infected, human host to a non-human host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: An infectious disease associated with an infectious agent that bears the reverse zoonotic disposition is referred to as a reverse zoonosis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000454
literal: reverse zoonotic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: Disposition that inheres in a collection of entities in virtue of the individual dispositions of the constituents of that collection.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: This should be pushed up to: http://purl.obolibrary.org/obo/bfo.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000455
literal: collective disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: Organism that is experiencing immunosuppression.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000456
literal: immunosuppressed organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: Organism that has immunocompetence.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000457
literal: immunocompetent organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: Disposition that inheres in a pathogen host and is a disposition to horizontally transmit that pathogen to organisms of the same species as the host, through casual contact, with a high likelihood of realization.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000458
literal: contagiousness

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: Host that contains a colony in or on its extended organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000459
literal: colonized host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: Quality that inheres in an infectious agent or infectious structure and is the likelihood that the agent or structure will undergo a horizontal transmission process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: The transmissibility quality varies with both the type of organism being transmitted and the type of organism to which transmission is happening.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000463
literal: infectious pathogen transmissibility

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: Quality that inheres in a pathogen and is the liklihood that the infectious disposition will be realized upon exposure of a susceptible organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: This quality is measured by the proportion of exposed who become infected.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000464
literal: infectivity

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: Quality that inheres in a pathogen and is the degree to which realizations of the infectious disease caused by the pathogen become severe or fatal.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: This quality is measured by the proportion of clinically apparent cases that are severe or fatal.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000466
literal: virulence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: Quality that inheres in an entity and is the degree to which it can be harmed by another entity.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: Low susceptibility is often referred to as resistance. In this sense, resistance is a quality.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000467
literal: susceptibility

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: Susceptibility that inheres in an organism and is the degree to which it can be harmed by an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000468
literal: susceptibility to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: Susceptibility that is the degree to which an entity can be harmed or inhibited from surviving by a drug.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000469
literal: drug susceptibility

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: Drug susceptibility that inheres in an infectious agent and is the degree to which the infectious agent can be harmed or inhibited from surviving by a drug.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000470
literal: drug susceptibility of infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000471
literal: Infection comprised of infectious organisms from different species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000471
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000471
literal: complex infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: Infection in which pathogen parts persist in the extracellular space of the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000472
literal: extracellular infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: Infection in which pathogen parts persist inside host cells.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000473
literal: intracellular infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000474
literal: Infection for which the infectious agents or structures that are part of the infection are distributed throughout the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000474
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000474
literal: systematic infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000475
literal: Infection for which the infectious agents or structures that are part of the infection are limited to a relatively small area of the host's body.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000475
literal: local infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: Infectious disease course that begins soon after infection is established and progresses rapidly to severe stages.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000477
literal: acute infectious disease course

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: Quality that inheres in an organism population and is the number of realizations of an infectious disease for which the infectious disease course begins during a specified period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: A particular instance of infectious disease incidence will depend on a type of infectious disease, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000479
literal: infectious disease incidence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: Quality that inheres in an organism population and is the number of organisms in the population that become infected with a pathogen during a specified period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: A particular instance of infection incidence will depend on a type of infectious agent, a population, and a period of time. Incidence is used as a measure of risk. Actual measures of incidence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics. These constraints will vary with the context of the incidence measure.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000480
literal: infection incidence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: Quality that inheres in an organism population and is the proportion of members of the population not experiencing an infectious disease course at the beginning of a specified period of time and in whom the infectious disease begins during the specified period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: cumulative incidence of infectious disease

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: An instance of infectious disease incidence proportion is measured by dividing a measure of an instance of infectious disease incidence by the number of members of the population in which the infectious disease course had not begun at the beginning of the specified period of time over which the incidence was measured.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000481
literal: infectious disease incidence proportion

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: Quality that inheres in an organism population and is the proportion of members of the population not infected at the beginning of a specified period of time who become infected during the specified period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: cumulative incidence of infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: An instance of infection incidence proportion is measured by dividing a measure of an instance of infection incidence by the number of members of the population not infected at the beginning of the specified period of time over which the incidence was measured.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000482
literal: infection incidence proportion

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: Quality that inheres in an organism population and is the infectious disease incidence proportion per unit time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: An instance of infectious disease incidence rate is measured by dividing a measure of an instance of the infectious disease incidence proportion by the length of the period of time over which the incidence was measured.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000483
literal: infectious disease incidence rate

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: Quality that inheres in an organism population and is the infection incidence proportion per unit time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: An instance of infection incidence rate is measured by dividing a measure of an instance of infection incidence proportion by the length of the period of time over which the incidence was measured.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000484
literal: infection incidence rate

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: Quality that inheres in an organism population and is the number of realizations of an infectious disease in the population at a specified time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease prevalence will depend on a type of infectious disease, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000485
literal: infectious disease prevalence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: Quality that inheres in an organism population and is the number of organisms in the population infected with a pathogen at a specified time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infection prevalence will depend on a type of infectious agent, a population, and a period of time. Actual measures of prevalence are based only on reported cases and usually specify a time interval and geographic location. Other constraints may include population demographics.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000486
literal: infection prevalence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: Quality that inheres in an organism population and is the number of organisms in the population who have, at any point during their lives, been bearers of an infectious disease and experienced realization of the disease.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious disease lifetime prevalence will depend on a type of infectious disease and a population. Actual measures of prevalence are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000487
literal: infectious disease lifetime prevalence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: Quality that inheres in an organism population and is the number of organisms in the population that have antibody specific for a pathogen in their serum at a specified time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious agent seroprevalence will depend on a type of infectious agent and a population. Actual measures of seroprevalence are based only on tested individuals and usually specify a geographic location. Other constraints may include population demographics.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000488
literal: pathogen seroprevalence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: Quality that inheres in an organism population and is the per capita number of deaths in the population resulting from an infectious disease over a specified period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: A particular instance of infectious disease mortality rate will depend on a type of infectious disease and a population. Actual measures of mortality rate are based only on reported cases and usually specify a geographic location. Other constraints may include population demographics. Mortality rate is typically expressed in units of deaths per 1000 individuals per year.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000489
literal: infectious disease mortality rate

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: Quality that inheres in an organism population in virtue of the fact that infections of the type that causes an infectious disease are maintained in the population via intra-population transmission or by transmission from a local reservoir.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: A particular instance of infectious disease endemicity will depend on a type of infectious agent and a population. The population may be specified by temporal, geographic, or demographic constraints. Infectious diseases that are typical or common to a particular population are referred to as endemic.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000490
literal: infectious disease endemicity

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: Quality that inheres in an organism population by virtue of the fact that realizations of an infectious disease occur in the population with a fluctuating prevalence.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: Sporadic quality of infectious disease is relational to previous prevalence of the disease.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000494
literal: infectious disease sporadicity

AnnotationAssertion
abbreviated IRI: obo:IDO_0000495
literal: Disease course that is the realization of an infectious disease.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000495
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000495
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000495
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000495
literal: infectious disease course

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: Chronic infectious disease course that does not progress to severe stages for a long period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000496
literal: long-term non-progressing infectious disease course

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: Process by which an organism acquires immunity to an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000497
literal: immunization against infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: Immunization that begins with exposure of an organism to antigen and results in immunity against an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: inoculation

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000498
literal: active immunization against infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: Active immunization that begins with exposure of an organism to a vaccine.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000499
literal: vaccination against infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: Active immunization that begins with exposure to smallpox in the form of a scab from a pustule and results in immunity against smallpox.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000500
literal: variolation

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: Immunization that begins with transfer to an organism of molecules not produced by that organism and that confer immunity against an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000501
literal: passive immunization against infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: Process of infectious disease realizations and for which there is a statistically significant increase in the infectious disease incidence of a population.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000502
literal: infectious disease epidemic

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: Process in which multiple infectious disease epidemics of the same type of infectious disease unfold over overlapping periods of time and affect organism populations located in different geographic regions, including different countries and continents.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000503
literal: infectious disease pandemic

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: Disorder that is part of an extended organism which has an infectious pathogen part, that exists as a result of a process of formation of disorder initiated by the infectious pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000504
literal: infectious disorder

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: Infection that has as part bacteria located in the blood.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000506
literal: bacteremia

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: Aggregate of organisms of the same species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: The organism population may be delineated by spatio-temporal proximity or by demographic criteria such as age.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000509
literal: organism population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
literal: Organism population whose members have an infection.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000511
literal: infected population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
literal: Organism population in whose members an infectious disease is being realized.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000512
literal: diseased population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
literal: Organism population whose members each have an infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000513
literal: infectious agent population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: Organism population whose members are not infected with an infectious agent and who lack immunity to the infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: at-risk population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000514
literal: susceptible population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: Organism population whose members are participating in non-parasitic symbiosis with a particular host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: normal resident microflora population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: An infectious organism population (IDO:0000513) (1) that is not part of any infection (IDO:0000586), (2) whose members are participating in a process of symbiosis (GO:0044403) with the same host, and (3) whose members are organisms of types among the normal resident microbiota for the type of host organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000515
literal: normal resident microbiota population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: One-dimensional temporal region beginning with the extablishment of an infectious agent or structure in a host and ending with the onset of symptoms in the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000519
literal: incubation interval

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: One-dimensional temporal region during which a pathogen host bears a contagiousness disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000520
literal: communicability interval

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: Organism bearing a symbiont role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000522
literal: symbiont

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: Organism that can only reach developmental maturity, replicate, or persist in symbiosis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000523
literal: obligatory symbiont

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: Symbiont bearing a mutualist role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000524
literal: mutualist

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: Symbiont bearing a commensal role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000525
literal: commensal

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: Symbiont bearing a parasite role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000526
literal: parasite

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: Material entity bearing a pathogenic disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000528
literal: pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: Pathogen bearing a primary infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: principal pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000530
literal: primary pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: Object bearing a host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: http://purl.obolibrary.org/obo/ido.owl This should be pushed to an upper-level ontology.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000531
literal: host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: Host bearing a definitive host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: primary host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000532
literal: definitive host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: Host bearing an intermediate host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: secondary host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000533
literal: intermediate host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: Host bearing a dead-end host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: incidental host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000535
literal: dead-end host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: Pathogen host bearing an infectious agent host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000537
literal: infectious agent host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: Host bearing a pathogen host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000538
literal: pathogen host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: Infectious agent host bearing the infectious agent carrier role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000539
literal: asymptomatic infectious agent carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: Pathogen transporter bearing a pathogen vehicle role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000543
literal: pathogen vehicle

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: Pathogen vehicle bearing a fomite role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000544
literal: fomite

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: Material entity bearing a pathogen reservoir role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000545
literal: infectious agent reservoir

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: A macromolecule produced by a pathogen and that has a virulence factor disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000547
literal: virulence factor

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: Biological macromolecule that has an invasion disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: invasin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000548
literal: invasion factor

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: Molecular entity that has a toxin disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000549
literal: toxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: Toxin bearing an exotoxin disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000550
literal: exotoxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: Exotoxin bearing an enterotoxin disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000551
literal: enterotoxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: Toxin bearing an endotoxin disposition that is a structural component of a pathogen and is released from the pathogen only upon cytolysis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000552
literal: endotoxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
literal: Anatomical entity bearing a pathogen portal of entry role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000553
literal: pathogen portal of entry

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
literal: Anatomical entity bearing a pathogen portal of exit role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000554
literal: pathogen portal of exit

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: Biological macromolecule that has an adhesion disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: adhesin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: adhesion molecule

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000557
literal: adhesion factor

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: Infectious disorder bearing a primary infection role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000566
literal: primary infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: Infectious disorder bearing a secondary infection role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000567
literal: secondary infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000568
literal: Infectious disease inhering in an infectious disorder composed of pathogens having zoonotic dispositions.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000568
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000568
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000568
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000568
literal: zoonosis

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: Infection that is part of an asymptomatic carrier.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000570
literal: subclinical infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: Material entity bearing protective resistance.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000571
literal: resistant entity

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: Immunity to pathogen that inheres in an organism in virtue of germline encoded components that directly recognize components of potential pathogens.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000576
literal: innate immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: Immunity to pathogen that inheres in an organism in virtue of components of its circulating body fluid, e.g. blood, lymph, hemolymph.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: "Circulating body fluid" refers to blood, lymph, and hemolymph.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000578
literal: humoral immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: Immunity to pathogen that inheres in an organism in virtue of its leukocytes.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000579
literal: leukocyte-mediated immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: Immunity to pathogen that inheres in an organism in virtue of antibodies not produced by that organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000580
literal: passive immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: Resistance to drug that mitigates the damaging effects of an antibiotic.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000581
literal: antibiotic resistance

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: Pathogen whose infection incidence is increasing following its first introduction into a new host Species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000583
literal: emerging pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: Toxin bearing a cytotoxin disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000584
literal: cytotoxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: Collective disposition to initiate processes that result in a disorder.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000585
literal: collective pathogenic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: Part of an organism that itself is part of an extended organism with a pathogen as part, which participates in the formation of the infection.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000586
literal: infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: Resistance to pathogen that inheres in an organism due to an allele or combination of alleles in its genome.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: The resistance of individuals to HIV invasion oonferred by particular CCR5 alleles is an example. Resistance against malaria conferred by the sickle cell gene is another.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000587
literal: genetic resistance to pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: Collective disposition the realization of which mitigates the damaging effects of some entity on members of the collection.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000588
literal: collective resistance disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: Organism that has an immunodeficiency.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: immunocompromised organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000589
literal: immunodeficient organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: Infectious disease course that unfolds over a long period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000590
literal: chronic infectious disease course

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
literal: Organism population whose members have acquired immunity to an infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000592
literal: immune population

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: One-dimensional temporal region during which a transmission process occurs.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: This should be imported from: http://purl.obolibrary.org/obo/trans.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000593
literal: transmission interval

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: Organism that has an infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: This is an inferred subclass of pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000596
literal: infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: Process by which an infectious agent or infectious structure, established in a host, becomes part of an infection in the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000603
literal: process of establishing an infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: Establishment of localization in host process in which an organism or acellular structure establishes a colony in or on a host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000604
literal: colonization of host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: Colonization of host process that results in a clinically abnormal colony.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000606
literal: establishment of a clinically abnormal colony

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: Process in which an entity comes into being as a result of the process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000607
literal: production

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: Production process in which a participant creates a copy of itself.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000608
literal: replication

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: Process that attenuates an immune response.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000610
literal: immunosuppression

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: Immunosuppression which unfolds as part of the natural self-regulation of an immune response.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000611
literal: physiologic immunosuppression

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: Immunosuppression process which arises as the result of a disorder.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000612
literal: pathologic immunosuppression

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
literal: Organism population persisting in a site it has colonized.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000615
literal: colony

AnnotationAssertion
abbreviated IRI: obo:IDO_0000616
literal: Colony whose members are infectious agents.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000616
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000616
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000616
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000616
literal: infectious agent colony

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: Disorder of an immune system component that results in defective functioning of the immune system.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000617
literal: immunodeficiency

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: Disposition inhering in an organism that is the disposition to mount a normal immune response.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000618
literal: immunocompetence

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: Disposition whose realization negatively regulates an immune response.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000619
literal: immunosuppressive disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: Immunity to pathogen that inheres in an organism in virtue of antigen receptors encoded by somatically diversified genes in the organism's genome and expressed by cells that have undergone selection during a primary immune response in that organism.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: adaptive immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000621
literal: acquired immunity to infectious agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: Infectious disposition to be transmitted from one organism to another of the same species by horizontal transmission.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000623
literal: communicability

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: Establishment of localization process in which a material entity reaches a site in or on a host in which it can survive, grow, multiply, or mature.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000625
literal: establishment of localization in host

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: Process by which a disorder comes into existence.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000626
literal: appearance of disorder

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: Infectious disorder that is the physical basis for an unfolding acute infectious disease course.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000627
literal: acute infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000628
literal: Infection that persists for an extended period of time.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000628
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000628
literal: chronic infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: Role borne by either an organism whose extended organism contains a distinct material entity, or an acellular structure containing a distinct material entity, realized in use of that structure or organism as a site of reproduction or replication.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: This should be pushed to: http://purl.obolibrary.org/obo/ogms.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000629
literal: host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: Infection resulting from a transmission process that unfolds in a hospital.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: nosocomial infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000630
literal: hospital-acquired infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: Infection resulting from a transmission process that did not unfold in a health care facility.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000631
literal: community-acquired infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: Toxin bearing a neurotoxin disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000632
literal: neurotoxin

AnnotationAssertion
abbreviated IRI: obo:IDO_0000633
literal: Infection established as a result of spread from another infection in a non-adjacent location in the extended organism of the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000633
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0000633
literal: metastatic infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: Role borne by a material entity that contains a site from which an infectious agent is transmitted.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000635
literal: source of infection role

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: Infection resulting from a transmission process that unfolds in a nursing home.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000638
literal: nursing-home acquired infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: Pathogen disposed to infect human hosts.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000639
literal: infectious human pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: Immunodeficiency that is not caused by a genetic predisposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: Causes of acquired immunodeficiences include infection and drug treatments (e.g. chemotherapy).

AnnotationAssertion
abbreviated IRI: obo:IDO_0000640
literal: acquired immunodeficiency

AnnotationAssertion
abbreviated IRI: obo:IDO_0000642
literal: Infection comprised of infectious organisms or structures all of the same Species.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000642
literal: simple infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: Pathogen whose infection incidence is increasing in a host population as a result of changes in the biology of the host or pathogen, or changes in their interactions.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000643
literal: re-emerging pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: Colonization of host in a human.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000650
literal: colonization of human

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: Immunodeficiency that exists in an organism because of a genetic predisposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: congenital immunodeficiency

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000651
literal: primary immunodeficiency

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: Infectious disease inhering in an infectious disorder composed of pathogens bearing reverse zoonotic dispositions.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000653
literal: reverse zoonosis

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: Pathogen with an opportunistic infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: opportunist

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000654
literal: opportunistic pathogen

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: Disposition to undergo a transmission process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: This should be pushed to: http://purl.obolibrary.org/obo/trans.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000655
literal: transmissibility disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0000656
literal: Pathogen transmission process in which a pathogen is transmitted from one host to another of the same species, and the two hosts are not in a parent-child relationship.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000656
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000656
literal: horizontal pathogen transmission process

AnnotationAssertion
abbreviated IRI: obo:IDO_0000657
literal: Process that results in death.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000657
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000657
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000657
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000657
literal: process that results in death

AnnotationAssertion
abbreviated IRI: obo:IDO_0000659
literal: Organism that is not infected with an infectious agent and lacks protective immunity to the infectious agent.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000659
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000659
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000659
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000659
literal: susceptible organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0000660
literal: results in

AnnotationAssertion
abbreviated IRI: obo:IDO_0000663
literal: Process that stops, prevents, or reduces the frequency, rate or extent of a life-sustaining process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000663
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000663
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000663
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000663
literal: negative regulation of life-sustaining process

AnnotationAssertion
abbreviated IRI: obo:IDO_0000664
literal: has_material_basis_in

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: Material entity bearing a source of infection role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0000665
literal: source of infection

AnnotationAssertion
abbreviated IRI: obo:IDO_0001000
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001000
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001000
literal: infectious disease incidence profile

AnnotationAssertion
abbreviated IRI: obo:IDO_0001001
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001001
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001001
literal: infectious disease incidence proportion profile

AnnotationAssertion
abbreviated IRI: obo:IDO_0001002
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001002
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001002
literal: infectious disease incidence rate profile

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: Immunosuppressed organism that is experiencing pathologic immunosuppression.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: negative regulation of establishment of localization

AnnotationAssertion
abbreviated IRI: obo:IDO_0001005
literal: pathologically immunosuppressed organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0001007
literal: Process that stops, prevents, or reduces the frequency, rate or extent of a production process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001007
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001007
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001007
literal: negative regulation of production

AnnotationAssertion
abbreviated IRI: obo:IDO_0001008
literal: Process that stops, prevents, or reduces the frequency, rate or extent of a replication process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001008
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001008
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001008
literal: negative regulation of replication

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: Process boundary that marks the start of the life cycle of a pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001009
literal: pathogen birth process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001010
literal: Process boundary that marks the end of the life cycle of a pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001010
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001010
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001010
literal: pathogen death process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001011
literal: Pathologically immunosuppressed organism that is experiencing drug-based immunosuppression.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001011
literal: Alex Diehl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001011
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:IDO_0001011
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001011
literal: drug-based immunosuppressed organism

AnnotationAssertion
abbreviated IRI: obo:IDO_0001025
literal: Disposition to kill fungi.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001025
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001025
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001025
literal: fungicidal disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001027
literal: Disposition to kill bacteria.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001027
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001027
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001027
literal: bactericidal disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001028
literal: Disposition to inhibit the reproduction of bacteria.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001028
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001028
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001028
literal: bacteriostatic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001029
literal: Disposition to kill parasites.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001029
literal: We use parasite in the sense of organisms that are parasitic in humans.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001029
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001029
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001029
literal: parasiticidal disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001030
literal: Disposition to inhibit the reproduction of parasites.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001030
literal: 'Parasite' is used in the sense of eukaryotic organisms that are parasitic in humans.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001030
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001030
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001030
literal: parasitostatic disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001040
literal: Static agent bearing a bacteriostatic disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001040
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001040
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001040
literal: bacteriostatic

AnnotationAssertion
abbreviated IRI: obo:IDO_0001041
literal: Cidal agent with a bactericidal disposition that is realized in a process of killing bacteria.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001041
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001041
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001041
literal: bactericidal

AnnotationAssertion
abbreviated IRI: obo:IDO_0001054
literal: Acellular structure that has an infectious disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001054
literal: This is an inferred subclass of pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001054
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001054
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001054
literal: infectious structure

AnnotationAssertion
abbreviated IRI: obo:IDO_0001065
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001065
literal: Aggregate of acellular structures.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001065
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001065
literal: acellular structure aggregate

AnnotationAssertion
abbreviated IRI: obo:IDO_0001083
literal: Zero-dimensional temporal region occupied by a pathogen birth process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001083
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001083
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001083
literal: pathogen birth temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001085
literal: Zero-dimensional temporal region occupied by a pathogen death process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001085
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001085
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001085
literal: pathogen death temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: prions

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: viruses

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: Self-replicating organic structure comprised of acellular organic parts.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001088
literal: acellular self-replicating organic structure

AnnotationAssertion
abbreviated IRI: obo:IDO_0001089
literal: Material entity with a cidal agent disposition that is realized in a process of killing bacteria, fungi, parasites, or viruses.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001089
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001089
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001089
literal: cidal agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0001090
literal: Material entity bearing a static agent disposition.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001090
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001090
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001090
literal: static agent

AnnotationAssertion
abbreviated IRI: obo:IDO_0001091
literal: Disposition to inhibit the reproduction of bacteria, fungi, or parasites, or inhibit the replication of viruses.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001091
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001091
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001091
literal: static agent disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001092
literal: Disposition to kill bacteria, fungi, parasites, or viruses.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001092
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001092
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001092
literal: cidal agent disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001093
literal: Pathogen host bearing an infectious structure host role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001093
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001093
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001093
literal: infectious structure host

AnnotationAssertion
abbreviated IRI: obo:IDO_0001094
literal: Pathogen host role borne by an object or organism whose extended organism contains an infectious structure.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001094
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001094
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001094
literal: infectious structure host role

AnnotationAssertion
abbreviated IRI: obo:IDO_0001095
literal: Material entity bearing a pathogen transporter role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001095
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001095
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001095
literal: pathogen transporter

AnnotationAssertion
abbreviated IRI: obo:IDO_0001096
literal: Role borne by a material entity in or on which a pathogen is located, from which the pathogen may be transmitted to a new host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001096
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001096
literal: pathogen transporter role

AnnotationAssertion
abbreviated IRI: obo:IDO_0001109
literal: Pathogen generative stage that is a temporal subdivision of an infectious agent developmental process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001109
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001109
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001109
literal: infectious agent generative stage

AnnotationAssertion
abbreviated IRI: obo:IDO_0001110
literal: Pathogen generative stage that is a temporal subdivision of an infectious structure developmental process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001110
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001110
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001110
literal: infectious structure generative stage

AnnotationAssertion
abbreviated IRI: obo:IDO_0001111
literal: Generative stage that is a temporal subdivision of a pathogen developmental process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001111
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001111
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001111
literal: pathogen generative stage

AnnotationAssertion
abbreviated IRI: obo:IDO_0001124
literal: Pathogen host role borne by an organism whose extended organism contains a pathogen bearing an infectious disposition towards the host, and the host has no symptoms of the infectious disease caused by the pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001124
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001124
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001124
literal: asymptomatic carrier role

AnnotationAssertion
abbreviated IRI: obo:IDO_0001126
literal: Pathogen host with an infection as part but exhibits no signs or symptoms.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001126
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001126
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001126
literal: asymptomatic carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0001127
literal: Infectious structure host bearing an asymptomatic carrier role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001127
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001127
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001127
literal: asymptomatic infectious structure carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0001133
literal: Pathogen host role borne by an organism whose extended organism contains a pathogen bearing an infectious disposition towards the host, and the host has manifested symptoms of the infectious disease caused by the pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001133
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001133
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001133
literal: symptomatic carrier role

AnnotationAssertion
abbreviated IRI: obo:IDO_0001134
literal: Pathogen host with infection as part that exhibits symptoms.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001134
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001134
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001134
literal: symptomatic carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0001163
literal: Toxin disposition realized in processes resulting in damage to host cells.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001163
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001163
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001163
literal: cytotoxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001164
literal: Toxin disposition realized in damaging or interfering with the function of nerve tissue.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001164
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001164
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001164
literal: neurotoxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001165
literal: Toxin disposition that is a structural component of a pathogen and is realized only during cytolsis.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001165
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001165
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001165
literal: endotoxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001166
literal: Exotoxin disposition ithat is realized in a process of damaging intestinal mucosa cells.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001166
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001166
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001166
literal: enterotoxin disposition

AnnotationAssertion
abbreviated IRI: obo:IDO_0001167
literal: Infectious structure host bearing a symptomatic carrier role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001167
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001167
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001167
literal: symptomatic infectious structure carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0001168
literal: Infectious agent host bearing an infectious agent carrier role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001168
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001168
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001168
literal: symptomatic infectious agent carrier

AnnotationAssertion
abbreviated IRI: obo:IDO_0001172
abbreviated IRI: obo:ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001172
literal: Acellular structure aggregate whose members are infectious structures.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001172
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001172
literal: infectious structure aggregate

AnnotationAssertion
abbreviated IRI: obo:IDO_0001196
literal: Pathogen transporter bearing a pathogen vector role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001196
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001196
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001196
literal: pathogen vector

AnnotationAssertion
abbreviated IRI: obo:IDO_0001197
literal: Pathogen vector bearing a biological vector role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001197
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001197
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001197
literal: biological vector

AnnotationAssertion
abbreviated IRI: obo:IDO_0001198
literal: Pathogen vector bearing a mechanical vector role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001198
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001198
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001198
literal: mechanical vector

AnnotationAssertion
abbreviated IRI: obo:IDO_0001199
literal: Pathogen vehicle bearing a biological vehicle role.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001199
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001199
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001199
literal: biological vehicle

AnnotationAssertion
abbreviated IRI: obo:IDO_0001335
literal: Establishment of localization in or on a human host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001335
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001335
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001335
literal: establishment of localization in human host

AnnotationAssertion
abbreviated IRI: obo:IDO_0001343
literal: Process beginning with the establishing of an infection in a host and ending when the host becomes contagious, during which pathogens are multiplying in the host.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001343
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001343
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001343
literal: latency process

AnnotationAssertion
abbreviated IRI: obo:IDO_0001344
literal: Process boundary that marks the start of an infection, latency process, and incubation process.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001344
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001344
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001344
literal: infection start process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001345
literal: Process boundary marking the end of a latency period.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001345
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001345
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001345
literal: latency end process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001346
literal: Process boundary marking the end of an incubation period.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001346
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001346
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001346
literal: incubation end process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001348
literal: Zero-dimensional temporal region occupied by an infection start process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001348
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001348
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001348
literal: infection start temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001349
literal: Zero-dimensional temporal region occupied by an infection end process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001349
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001349
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001349
literal: infection end temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001350
literal: Zero-dimensional temporal region occupied by a latency end process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001350
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001350
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001350
literal: latency end temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001351
literal: Zero-dimensional temporal region occupied by a communicability end process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001351
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001351
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001351
literal: communicability end temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001352
literal: Zero-dimensional temporal region occupied by an incubation end process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001352
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001352
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001352
literal: incubation end temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001353
literal: Zero-dimensional temporal region occupied by a communicability start process boundary.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001353
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001353
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001353
literal: communicability start temporal region

AnnotationAssertion
abbreviated IRI: obo:IDO_0001354
literal: Process boundary marking the start of a latency interval.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001354
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001354
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001354
literal: latency start process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001355
literal: Process boundary marking the start of an incubation interval.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001355
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001355
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001355
literal: incubation start process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001356
literal: Process boundary marking the start of a communicability interval.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001356
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001356
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001356
literal: communicability start process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001357
literal: Process boundary marking the end of a communicability interval.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001357
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001357
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001357
literal: communicability end process boundary

AnnotationAssertion
abbreviated IRI: obo:IDO_0001374
literal: Biological role borne by a molecular entity that serves as the site on an antigen realized in immune system recognition and binding by antibodies.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001374
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001374
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:IDO_0001374
literal: epitope role

AnnotationAssertion
abbreviated IRI: obo:IDO_0001377
literal: Surveillance process aiming to produce information about one or several objects, in the form of microorganisms, which have the role of pathogen.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001377
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001377
literal: pathogen surveillance

AnnotationAssertion
abbreviated IRI: obo:IDO_0001378
literal: Surveillance process aiming to produce information about one or several objects, in the form of arthropods, which have the role of serving as biological pathogen vectors.

AnnotationAssertion
abbreviated IRI: obo:IDO_0001378
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:IDO_0001378
literal: vector surveillance

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_10239
literal: Acellular structure with RNA or DNA genetic material which uses host metabolic resources for RNA or DNA replication.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_10239
literal: The mass noun term label imported from the NCBITaxon "Viruses" has been replaced with the count noun "virus", to align with BFO.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_10239
abbreviated IRI: obo:ncbitaxon.owl

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_10239
literal: virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2
abbreviated IRI: obo:ncbitaxon.owl

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2
literal: bacteria

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: Human Immunodeficiency Virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: Virus with genetic material encoded in single-stranded RNA that replicates using reverse transcriptase to convert positive-sense RNA to DNA.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: http://purl.obolibrary.org/obo/NCBITaxon_2169561

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: Baltimore Classification Group VI

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2169561
literal: single-stranded RNA retrovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: Parvovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: Virus with genetic material encoded in single-stranded DNA and replicates using DNA polymerase.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: http://purl.obolibrary.org/obo/NCBITaxon_2731342

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: Baltimore Classification Group II

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2731342
literal: single-stranded DNA virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2759
abbreviated IRI: obo:ncbitaxon.owl

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_2759
literal: eukaryota

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: Adenovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: Poxvirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: Virus that has its genetic material encoded in double-stranded DNA and replicates using DNA polymerase.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: http://purl.obolibrary.org/obo/NCBITaxon_35237

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: Baltimore Classification Group I

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35237
literal: double-stranded DNA virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: Hepatitus B Virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: Virus with genetic material that is encoded in double-stranded DNA and replicates through single-stranded RNA intermediate.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: http://purl.obolibrary.org/obo/NCBITaxon_35268

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: Baltimore Classification Group VII

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: Pararetrovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35268
literal: double-stranded DNA retrovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: Coronavirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: Picornavirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: Virus with genetic material encoded in single-stranded RNA that can be translated directly into proteins.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: http://purl.obolibrary.org/obo/NCBITaxon_35278

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: Baltimore Classification Group IV

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35278
literal: positive-sense single-stranded RNA virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: Rhabdovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: Virus with genetic material encoded in single-stranded RNA that can be translated into proteins only after transcription by RNA polymerase.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: http://purl.obolibrary.org/obo/NCBITaxon_35301

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: Baltimore Classification Group V

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35301
literal: negative-sense single-stranded RNA virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: Reovirus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: Virus with genetic material encoded in double-stranded RNA.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: http://purl.obolibrary.org/obo/NCBITaxon_35325

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: Baltimore Classification Group III

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_35325
literal: double-stranded RNA virus

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_36469
literal: Acellular structure that consists of an abnormally folded protein which replicates by by transmitting its abnormal structure to other proteins.

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_36469
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_36469
literal: http://purl.obolibrary.org/obo/ncbitaxon.owl

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_36469
literal: prion

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_9606
abbreviated IRI: obo:ncbitaxon.owl

AnnotationAssertion
abbreviated IRI: obo:NCBITaxon_9606
literal: homo sapiens

AnnotationAssertion
abbreviated IRI: obo:OBI_0000011
literal: Process that realizes a plan which is the concretization of a plan specification.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000011
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000011
literal: planned process

AnnotationAssertion
abbreviated IRI: obo:OBI_0000047
literal: Material entity that is created or changed during material processing.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000047
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000047
literal: processed material

AnnotationAssertion
abbreviated IRI: obo:OBI_0000070
literal: Planned process with the objective to produce information about some evaluant.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000070
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000070
literal: assay

AnnotationAssertion
abbreviated IRI: obo:OBI_0000086
literal: Role inhering in a molecular entity when the molecular entity is used to produce a chemical reaction to detect, measure, or produce other substances.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000086
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000086
literal: reagent role

AnnotationAssertion
abbreviated IRI: obo:OBI_0000094
literal: Planned process which results in physical changes in a specified input material.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000094
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000094
literal: material processing

AnnotationAssertion
abbreviated IRI: obo:OBI_0000237
literal: Biological role inhering in some molecular entity, that stimulates an immune response when identified by the immune systems cells.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000237
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000237
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:OBI_0000237
literal: antigen role

AnnotationAssertion
abbreviated IRI: obo:OBI_0000293
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000293
literal: has specified input

AnnotationAssertion
abbreviated IRI: obo:OBI_0000295
literal: Participates in relation between a planned process and a continuant participating in that process that is not created during the process, where the presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000295
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000295
literal: is specified input of

AnnotationAssertion
abbreviated IRI: obo:OBI_0000299
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000299
literal: has specified output

AnnotationAssertion
abbreviated IRI: obo:OBI_0000312
literal: Participates in relation between a planned process and a continuant participating in that process where the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000312
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000312
literal: is specified output of

AnnotationAssertion
abbreviated IRI: obo:OBI_0000406
literal: Double stranded DNA that is the specified output of a polymerase chain reaction

AnnotationAssertion
abbreviated IRI: obo:OBI_0000406
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000406
literal: PCR product

AnnotationAssertion
abbreviated IRI: obo:OBI_0000415
literal: Enzymatic amplification in which a DNA polymerase is used to amplify a piece of DNA by in vitro enzymatic replication.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000415
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000415
literal: polymerase chain reaction

AnnotationAssertion
abbreviated IRI: obo:OBI_0000552
literal: Material processing amplifying cDNA during a PCR reaction while the cDNA results from a retrotranscription of messenger RNA isolated from a material entity.

AnnotationAssertion
abbreviated IRI: obo:OBI_0000552
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0000552
literal: reverse transcribed PCR

AnnotationAssertion
abbreviated IRI: obo:OBI_0100026
literal: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.

AnnotationAssertion
abbreviated IRI: obo:OBI_0100026
abbreviated IRI: obo:obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0100026
literal: organism

AnnotationAssertion
abbreviated IRI: obo:OBI_0600058
literal: Material processing using enzymes to increase the number of molecules of a material entity.

AnnotationAssertion
abbreviated IRI: obo:OBI_0600058
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_0600058
literal: enzymatic amplification

AnnotationAssertion
abbreviated IRI: obo:OBI_1110001
literal: Molecular entity bearing the epitope role.

AnnotationAssertion
abbreviated IRI: obo:OBI_1110001
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_1110001
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:OBI_1110001
literal: epitope

AnnotationAssertion
abbreviated IRI: obo:OBI_1110034
literal: Molecular entity bearing an antigen role.

AnnotationAssertion
abbreviated IRI: obo:OBI_1110034
literal: http://purl.obolibrary.org/obo/obi.owl

AnnotationAssertion
abbreviated IRI: obo:OBI_1110034
literal: antigen

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000020
literal: Process experienced by a patient which can only be experienced by the patient, that is hypothesized to be clinically relevant.

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000020
abbreviated IRI: obo:ogms.owl

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000020
literal: symptom

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000031
literal: Disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000031
abbreviated IRI: obo:ogms.owl

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000031
literal: disease

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000045
literal: Material entity that is a clinically abnormal part of an extended organism.

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000045
abbreviated IRI: obo:ogms.owl

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000045
literal: disorder

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000063
literal: Totality of all processes through which a given disease instance is realized.

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000063
abbreviated IRI: obo:ogms.owl

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000063
literal: disease course

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000087
literal: Object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism.

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000087
abbreviated IRI: obo:ogms.owl

AnnotationAssertion
abbreviated IRI: obo:OGMS_0000087
literal: extended organism

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000061
literal: Material entity that is a human made structure with firm connection between its foundation and the ground.

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000061
literal: http://purl.obolibrary.org/obo/OMRSE

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000061
literal: architectural structure

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000062
literal: Architectural structure that bears some function.

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000062
literal: http://purl.obolibrary.org/obo/OMRSE

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000062
literal: facility

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000063
literal: Facility that is run by a hospital organization and is the bearer of a hospital function.

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000063
literal: http://purl.obolibrary.org/obo/OMRSE

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000063
literal: hospital facility

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000102
literal: Facility that is administered by a health care organization for the purpose of providing health care to a patient or patient population.

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000102
literal: http://purl.obolibrary.org/obo/OMRSE

AnnotationAssertion
abbreviated IRI: obo:OMRSE_00000102
literal: healthcare facility

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: inheres in

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: this fragility inheres in this vase

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: this red color inheres in this apple

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: A dependent inheres in its bearer at all times for which the dependent exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: inheres_in

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0000052
literal: inheres in

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: bearer of

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: this apple is bearer of this red color

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: this vase is bearer of this fragility

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: bearer_of

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: is bearer of

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0000053
literal: bearer of

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: participates in

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: this blood clot participates in this blood coagulation

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: this input material (or this output material) participates in this process

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: this investigator participates in this investigation

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: a relation between a continuant and a process, in which the continuant is somehow involved in the process

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: participates_in

AnnotationAssertion
abbreviated IRI: obo:RO_0000056
literal: participates in

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: has participant

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: this blood coagulation has participant this blood clot

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: this investigation has participant this investigator

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: this process has participant this input material (or this output material)

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: a relation between a process and a continuant, in which the continuant is somehow involved in the process

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: has_participant

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: http://www.obofoundry.org/ro/#OBO_REL:has_participant

AnnotationAssertion
abbreviated IRI: obo:RO_0000057
literal: has participant

AnnotationAssertion
abbreviated IRI: obo:RO_0000058
literal: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).

AnnotationAssertion
abbreviated IRI: obo:RO_0000058
literal: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).

AnnotationAssertion
abbreviated IRI: obo:RO_0000058
literal: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

AnnotationAssertion
abbreviated IRI: obo:RO_0000058
literal: is concretized as

AnnotationAssertion
abbreviated IRI: obo:RO_0000059
literal: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).

AnnotationAssertion
abbreviated IRI: obo:RO_0000059
literal: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).

AnnotationAssertion
abbreviated IRI: obo:RO_0000059
literal: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

AnnotationAssertion
abbreviated IRI: obo:RO_0000059
literal: concretizes

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: this catalysis function is a function of this enzyme

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: function_of

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: is function of

AnnotationAssertion
abbreviated IRI: obo:RO_0000079
literal: function of

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: this red color is a quality of this apple

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: A quality inheres in its bearer at all times for which the quality exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: is quality of

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: quality_of

AnnotationAssertion
abbreviated IRI: obo:RO_0000080
literal: quality of

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: this investigator role is a role of this person

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: is role of

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: role_of

AnnotationAssertion
abbreviated IRI: obo:RO_0000081
literal: role of

AnnotationAssertion
abbreviated IRI: obo:RO_0000085
literal: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)

AnnotationAssertion
abbreviated IRI: obo:RO_0000085
literal: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000085
literal: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000085
literal: has_function

AnnotationAssertion
abbreviated IRI: obo:RO_0000085
literal: has function

AnnotationAssertion
abbreviated IRI: obo:RO_0000086
literal: this apple has quality this red color

AnnotationAssertion
abbreviated IRI: obo:RO_0000086
literal: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000086
literal: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.

AnnotationAssertion
abbreviated IRI: obo:RO_0000086
literal: has_quality

AnnotationAssertion
abbreviated IRI: obo:RO_0000086
literal: has quality

AnnotationAssertion
abbreviated IRI: obo:RO_0000087
literal: this person has role this investigator role (more colloquially: this person has this role of investigator)

AnnotationAssertion
abbreviated IRI: obo:RO_0000087
literal: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000087
literal: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0000087
literal: has_role

AnnotationAssertion
abbreviated IRI: obo:RO_0000087
literal: has role

AnnotationAssertion
abbreviated IRI: obo:RO_0000091
literal: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

AnnotationAssertion
abbreviated IRI: obo:RO_0000091
literal: has disposition

AnnotationAssertion
abbreviated IRI: obo:RO_0000092
literal: disposition of

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: this cell derives from this parent cell (cell division)

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: this nucleus derives from this parent nucleus (nuclear division)

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: derives_from

AnnotationAssertion
abbreviated IRI: obo:RO_0001000
literal: derives from

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: this parent cell derives into this cell (cell division)

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: this parent nucleus derives into this nucleus (nuclear division)

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: derives_into

AnnotationAssertion
abbreviated IRI: obo:RO_0001001
literal: derives into

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: is location of

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: my head is the location of my brain

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: this cage is the location of this rat

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: a relation between two independent continuants, the location and the target, in which the target is entirely within the location

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: location_of

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0001015
literal: location of

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: located in

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: my brain is located in my head

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: this rat is located in this cage

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: a relation between two independent continuants, the target and the location, in which the target is entirely within the location

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: located_in

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: http://www.obofoundry.org/ro/#OBO_REL:located_in

AnnotationAssertion
abbreviated IRI: obo:RO_0001025
literal: located in

AnnotationAssertion
abbreviated IRI: obo:RO_0001900
literal: temporal interpretation

AnnotationAssertion
abbreviated IRI: obo:RO_0001900
literal: https://github.com/oborel/obo-relations/wiki/ROAndTime

AnnotationAssertion
abbreviated IRI: obo:RO_0001901
literal: ## Elucidation This is used when the statement/axiom is assumed to hold true 'eternally' ## How to interpret (informal) First the "atemporal" FOL is derived from the OWL using the standard interpretation. This axiom is temporalized by embedding the axiom within a for-all-times quantified sentence. The t argument is added to all instantiation predicates and predicates that use this relation. ## Example Class: nucleus SubClassOf: part_of some cell forall t : forall n : instance_of(n,Nucleus,t) implies exists c : instance_of(c,Cell,t) part_of(n,c,t) ## Notes This interpretation is *not* the same as an at-all-times relation

AnnotationAssertion
abbreviated IRI: obo:RO_0001901
literal: axiom holds for all times

AnnotationAssertion
abbreviated IRI: obo:RO_0001902
literal: ## Elucidation This is used when the first-order logic form of the relation is binary, and takes no temporal argument. ## Example: Class: limb SubClassOf: develops_from some lateral-plate-mesoderm forall t, t2: forall x : instance_of(x,Limb,t) implies exists y : instance_of(y,LPM,t2) develops_from(x,y)

AnnotationAssertion
abbreviated IRI: obo:RO_0001902
literal: relation has no temporal argument

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: the surface of my skin is a 2D boundary of my body

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: 2D_boundary_of

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: boundary of

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: is 2D boundary of

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: is boundary of

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0002000
literal: 2D boundary of

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: my body has 2D boundary the surface of my skin

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: has boundary

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: has_2D_boundary

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0002002
literal: has 2D boundary

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: x regulates y if and only if the x is the realization of a function to exert an effect on the frequency, rate or extent of y

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: David Hill

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: Tanya Berardini

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
IRI: http://purl.obolibrary.org/obo/ro/docs/causal-relations

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: GO

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: Regulation precludes parthood; the regulatory process may not be within the regulated process.

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: regulates (processual)

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: false

AnnotationAssertion
abbreviated IRI: obo:RO_0002211
literal: regulates

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
literal: x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
IRI: http://purl.obolibrary.org/obo/ro/docs/causal-relations

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
literal: negatively regulates (process to process)

AnnotationAssertion
abbreviated IRI: obo:RO_0002212
literal: negatively regulates

AnnotationAssertion
abbreviated IRI: obo:RO_0002213
literal: x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y

AnnotationAssertion
abbreviated IRI: obo:RO_0002213
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:RO_0002213
IRI: http://purl.obolibrary.org/obo/ro/docs/causal-relations

AnnotationAssertion
abbreviated IRI: obo:RO_0002213
literal: positively regulates (process to process)

AnnotationAssertion
abbreviated IRI: obo:RO_0002213
literal: positively regulates

AnnotationAssertion
abbreviated IRI: obo:RO_0002234
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0002234
literal: p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.

AnnotationAssertion
abbreviated IRI: obo:RO_0002234
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:RO_0002234
literal: produces

AnnotationAssertion
abbreviated IRI: obo:RO_0002234
literal: has output

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
abbreviated IRI: obo:IAO_0000125

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: Chris Mungall

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: GOC:mtg_berkeley_2013

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: results_in_formation_of

AnnotationAssertion
abbreviated IRI: obo:RO_0002297
literal: results in formation of

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: An organism that is a member of a population of organisms

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: is member of is a mereological relation between a item and a collection.

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: is member of

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: member part of

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: SIO

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0002350
literal: member of

AnnotationAssertion
abbreviated IRI: obo:RO_0002351
literal: has member is a mereological relation between a collection and an item.

AnnotationAssertion
abbreviated IRI: obo:RO_0002351
literal: SIO

AnnotationAssertion
abbreviated IRI: obo:RO_0002351
abbreviated IRI: obo:RO_0001901

AnnotationAssertion
abbreviated IRI: obo:RO_0002351
literal: has member

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000000
literal: Process in which a pathogen is transmitted directly or indirectly to a new host.

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000000
literal: TRANS includes a sibling class of 'indirect' labeled 'direct', and these terms mirror standard definitions of 'direct transmission' and 'indirect transmission' in the literature. However, in the literature and in TRANS the definitions seem confused. For example, direct transmission is claimed to involve direct contact, yet respiratory droplet spread from a host - which plausibly involves a vehicle - is counted as direct rather than indirect transmission. We will follow standard use in part, adopting indirect transmission, but not direct, and defining a term for contact transmission.

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000000
abbreviated IRI: obo:trans.owl

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000000
literal: pathogen transmission process

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000002
literal: Pathogen transmission process in which a pathogen is indirectly transferred to a host by intermediary vehicles or vectors.

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000002
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000002
abbreviated IRI: obo:trans.owl

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000002
literal: indirect pathogen transmission process

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000007
literal: Pathogen transmission process in which a pathogen is transferred to a host through surface-to-surface contact.

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000007
literal: http://purl.obolibrary.org/obo/trans.owl

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000007
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000007
literal: contact pathogen transmission process

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000008
literal: Indirect pathogen transmission process in which a pathogen is transmitted from a host expelling respiratory droplets to another host.

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000008
literal: http://purl.obolibrary.org/obo/trans.owl

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000008
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:TRANS_0000008
literal: droplet pathogen transmission process

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000178
literal: A fluid that is composed of blood plasma and erythrocytes.

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000178
abbreviated IRI: obo:uberon.owl

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000178
literal: blood

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000463
literal: Anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body.

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000463
literal: http://purl.obolibrary.org/obo/uberon.owl

AnnotationAssertion
abbreviated IRI: obo:UBERON_0000463
literal: organism substance

AnnotationAssertion
abbreviated IRI: obo:UBERON_0006538
literal: Organism substance that is secreted by a respiratory system.

AnnotationAssertion
abbreviated IRI: obo:UBERON_0006538
literal: http://purl.obolibrary.org/obo/uberon.owl

AnnotationAssertion
abbreviated IRI: obo:UBERON_0006538
literal: respiratory secretion

AnnotationAssertion
abbreviated IRI: obo:UBERON_0007311
literal: Matter ejected from the lungs, bronchi, and trachea, through the mouth.

AnnotationAssertion
abbreviated IRI: obo:UBERON_0007311
literal: http://purl.obolibrary.org/obo/uberon.owl

AnnotationAssertion
abbreviated IRI: obo:UBERON_0007311
literal: sputum

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: Infection that has as part virus particles located in the blood.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000505
literal: viremia

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508
literal: Virus that is in its assembled state consisting of genomic material (DNA or RNA) surrounded by coating molecules.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000508
literal: virion

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: Cidal agent with a viricidal disposition that is realized in a process of killing viruses.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: Albert Goldfain

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: Alexander Diehl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: Lindsay Cowell

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: http://purl.obolibrary.org/obo/ido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0000564
literal: viricide

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001004
literal: Static agent bearing a virostatic disposition.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001004
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001004
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001004
literal: virostatic

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001016
literal: Replication process in which a virus containing some portion of genetic material inherited from a parent virus is replicated.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001016
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001016
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001016
literal: virus replication

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001022
literal: Disposition to kill viruses.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001022
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001022
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001022
literal: viricidal disposition

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001024
literal: A disposition to inhibit the reproduction of viruses.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001024
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001024
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001024
literal: virostatic disposition

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001066
literal: Acellular structure aggregate whose members are viruses

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001066
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001066
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001066
literal: virus aggregate

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001067
literal: Acellular infectious aggregate whose members are viroids.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001067
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001067
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001067
literal: viroid aggregate

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001069
literal: Acellular infectious aggregate whose members are prions.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001069
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001069
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001069
literal: prion aggregate

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001086
literal: Replication process in which a prion facilitates abnormal folding in proteins resulting in additional, identical, abnormally folded proteins.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001086
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001086
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001086
literal: prion replication

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001114
literal: Infectious structure generative stage that is a temporal subdivision of a virus developmental process.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001114
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001114
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001114
literal: virus generative stage

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001120
literal: Infectious disease whose physical basis is a virus disorder that is clinically abnormal in virtue of the presence of the relevant virus population.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001120
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001120
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001120
literal: viral disease course

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001122
literal: Infectious disorder that exists as a result of a process of formation of disorder initiated by a virus.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001122
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001122
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001122
literal: virus disorder

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001128
literal: Infectious structure host whose extended organism has some virus part.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001128
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001128
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001128
literal: virus host

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001169
literal: Subclinical infection that is part of a virus host.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001169
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001169
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001169
literal: subclinical virus infection

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001188
literal: Respiratory secretion composed of a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001188
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001188
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001188
literal: respiratory droplet

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001189
literal: Respiratory droplet bearing a fomite role.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001189
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001189
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001189
literal: respiratory droplet fomite

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001190
literal: Respiratory droplet fomite with virus part.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001190
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001190
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001190
literal: respiratory droplet virus fomite

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001194
literal: Pathogenesis process realization of a pathogenic disposition inhering in a virus or virus population, having at least the proper process parts: (1) pathogen transmission, (2) establishment of localization in host, (3) process of establishing a viral infection, and (4) appearance of a virus disorder.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001194
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001194
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001194
literal: viral pathogenesis

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001195
literal: Process of establishing an infection in which a virus participates.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001195
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001195
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001195
literal: process of establishing viral infection

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001266
literal: Cell with an adhesion factor part bearing a viral adhesion disposition

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001266

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001266
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001266
literal: virus adhesion susceptible cell

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001267
literal: Adhesion disposition borne by a macromolecule part of a virus that is the disposition to participate in a virus attachment process

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001267
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001267
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001267
literal: viral adhesion disposition

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001331
literal: Quality inhering in a portion of fluid that is the proportion of virions to volume of that portion of fluid

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001331
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001331
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001331
literal: viral load

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001333
literal: Virus which infects and replicates within or on bacteria or archea.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001333
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001333
literal: This is an inferred subclass of pathogen.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001333
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001333
literal: bacteriophage

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001334
literal: Virus which infects and replicates within or on viruses.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001334
literal: This is an inferred subclass of pathogen.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001334
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001334
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001334
literal: virophage

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001336
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001336
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001336
literal: establishment of localization in virus host

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001361
literal: Virus that causes cancer in hosts.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001361
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001361
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001361
literal: oncovirus

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001363
literal: Acellular self-replicating organic structure having some clinically abnormal arrangement of viral components (e.g. viral capsid, viral DNA/RNA).

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001363
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001363
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001363
literal: disordered virus

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001364
literal: Acellular structure having some arrangement of protein components, that is clinically abnormal.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001364
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001364
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001364
literal: disordered prion

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001365
literal: Process beginning with the establishment of a virus in a host and ending with the first appearance of a virion following viral release, during which an infecting virus is uncoating to begin genome replication.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001365
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001365
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001365
literal: eclipse process

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001372
literal: Site part of an antigen that is recognized by immune system cells and to which antibodies attach.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001372
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001372
literal: epitope site

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001386
literal: Process in which multiple viral disease epidemics of the same type of viral disease unfold over overlapping periods of time and affect organism populations located in different geographic regions, including different countries and continents.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001386
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001386
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001386
literal: viral disease pandemic

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001387
literal: Process of viral disease realizations and for which there is a statistically significant increase in the infectious disease incidence of a population.

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001387
literal: http://purl.obolibrary.org/obo/vido.owl

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001387
literal: John Beverley

AnnotationAssertion
abbreviated IRI: obo:VIDO_0001387
literal: viral disease epidemic

AnnotationAssertion
abbreviated IRI: obo:VSMO_
literal: Planned process with the objective to produce information about some evaluant with the purpose of, if justified by the information gathered, managing, directing, or protecting.

AnnotationAssertion
abbreviated IRI: obo:VSMO_
literal: http://purl.obolibrary.org/obo/vsmo.owl

AnnotationAssertion
abbreviated IRI: obo:VSMO_
literal: surveillance process

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/CARO_0000005
literal: Site generated by morphogenetic or physiologic processes that is bounded by an anatomical surface.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/CARO_0000005
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/CARO_0000005
literal: anatomical space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/CARO_0000062
literal: Anatomical space that is part of a cell.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/CARO_0000062
literal: cell space

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001026
literal: Disposition to inhibit the reproduction of fungi.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001026
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001026
literal: fungistatic disposition

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001036
literal: Anatomical space through which a pathogen enters an organism.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001036
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001036
literal: pathogen portal of entry site

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001037
literal: Anatomical space through which a pathogen exits an organism.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001037
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001037
literal: pathogen portal of exit site

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001072
literal: Anatomical space in which an infection is located.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001072
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001072
literal: site of infection

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001107
literal: Anatomical space in which an infection appears in a host organism.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001107
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001107
literal: source of infection site

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001130
literal: A pathogen transporter role that is borne by an organism active in the transfer of an infectious agent or infectious structure to an organism of another species in which it can realize its infectious disposition.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001130
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001130
literal: The role is realized in a process that transfers an infectious organism from one location to another.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001130
literal: pathogen vector role

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001157
literal: Pathogenic disposition borne by a pathogen to be transmitted to a host and become part of an infection in that host or immunocompetent members of the same species as the host.

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001157
literal: John Beverley

AnnotationAssertion
IRI: http://purl.obolibrary.org/obo/ido.owl/IDO_0001157
literal: infectious disposition

AnnotationAssertion
IRI: /VIDO_0001355
literal: Infectious disease incidence profile comprised of a series of determinate viral disease incidence qualities caused by a specific virus in a population over time.

AnnotationAssertion
IRI: /VIDO_0001355
literal: viral disease incidence profile

AnnotationAssertion
IRI: /VIDO_0001356
literal: Infectious disease incidence proportion profile comprised of a series of viral disease incidence proportion qualities caused by a specific virus per unit time.

AnnotationAssertion
IRI: /VIDO_0001356
literal: viral disease incidence proportion profile

AnnotationAssertion
IRI: /VIDO_0001357
literal: Infectious disease incidence rate profile comprised of a series of viral disease rate qualities caused by a specific virus per unit time.

AnnotationAssertion
IRI: /VIDO_0001357
literal: viral disease incidence rate profile

AnnotationAssertion
IRI: /VIDO_0001358
literal: One-dimensional temporal region on which a virus is no longer replicating but remains within a host cell and which may be reactivated to begin replication again.

AnnotationAssertion
IRI: /VIDO_0001358
literal: viral dormancy interval

AnnotationAssertion
IRI: /VIDO_0001359
literal: Object consisting of an organic structure that is able to initiate replication of its structure in a host.

AnnotationAssertion
IRI: /VIDO_0001359
literal: self-replicating organic structure

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_0000684
literal: Disease that occurs in different organs functioning in respiration and consisting especially of the nose, nasal passages, nasopharynx, larynx, trachea, bronchi, and lungs.

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_0000684
literal: respiratory system disease

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_0009433
literal: Respiratory system disease located in the lower respiratory tract.

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_0009433
literal: lower respiratory tract disease

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_1000637
literal: Progressive and life-threatening pulmonary distress in the absence of an underlying pulmonary condition, usually following major trauma or surgery.

AnnotationAssertion
IRI: http://www.ebi.ac.uk/efo/EFO_1000637
literal: acute respiratory distress syndrome

AnnotationAssertion
abbreviated IRI: oboInOwl:shorthand
literal: shorthand

AnnotationAssertion
IRI: http://www.informatics.jax.org/vocab/gene_ontology/GO:0009405
literal: Process that generates the ability of a pathogen to induce disorder in an organism.

AnnotationAssertion
IRI: http://www.informatics.jax.org/vocab/gene_ontology/GO:0009405
literal: Process that is the realization of a pathogenic disposition inhering in an pathogen or pathogen population, having at least the proper process parts: (1) pathogen transmission, (2) establishment of localization in host, (3) process of establishing an infection, and (4) appearance of disorder.

AnnotationAssertion
IRI: http://www.informatics.jax.org/vocab/gene_ontology/GO:0009405
literal: John Beverley

AnnotationAssertion
IRI: http://www.informatics.jax.org/vocab/gene_ontology/GO:0009405
literal: pathogenesis

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/Country
literal: A Geopolitical Entity that delimits a Government with effective internal and external sovereignty over the region and its population, and which is not dependent on or subject to any other power or Geopolitical Entity.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/Country
literal: country

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity
literal: Information Content Entity that consists of a set of propositions that describe some Entity.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DescriptiveInformationContentEntity
literal: descriptive information content entity

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity
literal: Information Content Entity that consists of a set of symbols that denote some Entity.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DesignativeInformationContentEntity
literal: designative information content entity

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity
literal: Information Content Entity that consists of a set of propositions or images (as in the case of a blueprint) that prescribe some Entity.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity
literal: directive information content entity

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DivisionOfGeopoliticalEntity
literal: A Geospatial Region that is a fiat division of a Geopolitical Entity and not a Geopolitical Entity.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/DivisionOfGeopoliticalEntity
literal: division of geopolitical entity

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeopoliticalEntity
literal: A geospatial region that delimits the authority of a formally constituted government to exercise its control within the bounded area.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeopoliticalEntity
literal: geopolitical entity

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialLocation
literal: A Geospatial Region at which an Entity or Event is located.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialLocation
literal: geospatial location

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion
literal: A site at or near the surface of the Earth.

AnnotationAssertion
IRI: http://www.ontologyrepository.com/CommonCoreOntologies/GeospatialRegion
literal: geospatial region

AnnotationAssertion
abbreviated IRI: rdfs:label
literal: label