obsolete.owl
type: Ontology
version IRI: obsolete.owl
default language: en
comment: obsolete classes from the information artifact ontology. see https://github.com/information-artifact-ontology/IAO

obsolete_specifically denotes
type: ObjectProperty
sub property of: ObsoleteProperty
IAO_0000112: The process of creation is, for example, writing down on paper the name of a friend by deliberately creating a certain pattern using ink. Here the ink + paper is the independent continuant and the carrier is the pattern in the ink. c = pattern in the ink b = paper + ink r = friend
IAO_0000114: IAO_0000125
IAO_0000115: c specifically denotes r =def r is a portion of reality & c is a particular quality & c depends specifically on some independent continuant b & b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly. Marked means there is a changed or additional quality of the bearer - the quality is the information carrier. Case 1 Memory trace as mark created when reading some description of some friend. The trace can denote. Case 2 Pattern of ink arrayed on paper as mark when writing down a friend's name Case 3 Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file.
IAO_0000116: 8/6/2009 Alan Ruttenberg: The suggestions is to deprecate specific and generically denotes in favor of a single denote relationship that corresponds to the generic sense
IAO_0000116: see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
IAO_0000117: Alan Ruttenberg
IAO_0000119: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
IAO_0000231: IAO_0000103
deprecated: true

obsolete_materially denotes
type: ObjectProperty
sub property of: ObsoleteProperty
IAO_0000116: see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
IAO_0000231: IAO_0000103
deprecated: true

obsolete_describes
type: ObjectProperty
sub property of: ObsoleteProperty
IAO_0000231: IAO_0000103
deprecated: true

obsolete_represents
type: ObjectProperty
sub property of: ObsoleteProperty
IAO_0000231: IAO_0000103
deprecated: true

obsolete_artifact
type: Class
subclass of: ObsoleteClass
IAO_0000231: IAO_0000103
deprecated: true

obsolete2_digital entity
type: Class
subclass of: ObsoleteClass
IAO_0000111: obsolete_digital entity
IAO_0000115: A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 Superclass was 'digitial quality'
IAO_0000117: person:Chris Stoeckert
IAO_0000119: OBI_0000261
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete_material_entity
type: Class
subclass of: ObsoleteClass
IAO_0000231: IAO_0000226
deprecated: true

obsolete2_binary digital entity
type: Class
subclass of: ObsoleteClass
IAO_0000111: binary digital entity
IAO_0000112: MS Word document, ZIP file, DICOM file, JPEG file
IAO_0000115: A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 Superclass was 'digital entity'
IAO_0000116: digital_entity
IAO_0000117: person:Chris Stoeckert
IAO_0000119: OBI_0000244
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete_unit of measure
type: Class
subclass of: ObsoleteClass
IAO_0000112: The length of a ruler.
IAO_0000115: a unit of measure is the quality of some material entity compared to which another quality is some multiple of.
IAO_0000117: Alan Ruttenberg
IAO_0000119: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
IAO_0000231: IAO_0000103
deprecated: true

obsolete_study interpretation
type: Class
subclass of: ObsoleteClass
IAO_0000111: obsolete_study interpretation
IAO_0000114: IAO_0000125
IAO_0000115: A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses
IAO_0000116: 2009-03-16: definition was "A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application."
IAO_0000116: 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
IAO_0000116: The obsoleting of narrative object required a modest change in the definition of this term. Circularity with "interpretation... interprets" has been removed, using "about the implications" instead.
IAO_0000117: Lawrence Hunter
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Jennifer Fostel
IAO_0000117: PERSON: Melanie Courtot
IAO_0000118: conclusion
IAO_0000119: OBI_0000005
IAO_0000231: IAO_0000103
deprecated: true

obsolete2_text based digital entity
type: Class
subclass of: ObsoleteClass
IAO_0000111: text based digital entity
IAO_0000112: XML file, C++ source code file
IAO_0000115: A text based digital entity is a digital entity that is encoded so that it only contains text characters.
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digital document'
IAO_0000116: digital_entity
IAO_0000117: person:Chris Stoeckert
IAO_0000119: OBI_0000132
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete2_report figure
type: Class
subclass of: ObsoleteClass
IAO_0000111: report figure
IAO_0000114: IAO_0000124
IAO_0000115: A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements
IAO_0000116: I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report
IAO_0000116: Replaced by defined version of figure
IAO_0000117: person:Alan Ruttenberg
IAO_0000117: person:Allyson Lister
IAO_0000119: OBI_0000027
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete_report element
type: Class
subclass of: ObsoleteClass
IAO_0000111: report element
IAO_0000114: IAO_0000120
IAO_0000115: A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).
IAO_0000116: 2009-03-16: needs some more work (clarify relations).
IAO_0000116: 2009-03-16: was report display element with definition: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.
IAO_0000116: 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
IAO_0000116: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion
IAO_0000116: Replaced by textual entity and figure
IAO_0000116: There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Allyson Lister
IAO_0000117: PERSON: Melanie Courtot
IAO_0000119: GROUP:OBI
IAO_0000119: OBI_0000001
IAO_0000231: IAO_0000103
deprecated: true

obsolete2_binary executable
type: Class
subclass of: ObsoleteClass
IAO_0000111: binary executable
IAO_0000115: Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007)
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digital entity'
IAO_0000117: person:Jennifer Fostel
IAO_0000119: OBI_0000222
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete_report table
type: Class
subclass of: ObsoleteClass
IAO_0000111: report table
IAO_0000114: IAO_0000002
IAO_0000115: A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content
IAO_0000116: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity table'. Alan restored as there are OBI dependencies and this merits further discussion
IAO_0000117: person:Alan Ruttenberg
IAO_0000117: person:Allyson Lister
IAO_0000119: OBI_0000265
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete2_digital document
type: Class
subclass of: ObsoleteClass
IAO_0000111: digital document
IAO_0000115: A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications. The digital document does not refer to the information content of the document but to an instance of the file.
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digial entity'
IAO_0000117: person:Jennifer Fostel
IAO_0000119: OBI_0000195
IAO_0000119: group:OBI
IAO_0000231: IAO_0000103
deprecated: true

obsolete_identifier
type: Class
subclass of: ObsoleteClass
IAO_0000114: IAO_0000121
IAO_0000116: _identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots. Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group "identifiying" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.
IAO_0000231: IAO_0000226
deprecated: true

obsolete_digital quality
type: Class
subclass of: ObsoleteClass
IAO_0000116: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
IAO_0000116: Need to rework digital entity. Digital quality was suggested by Barry.
IAO_0000231: IAO_0000103
deprecated: true

obsolete_survival curve
type: Class
subclass of: ObsoleteClass
IAO_0000111: obsolete_survival curve
IAO_0000114: IAO_0000122
IAO_0000115: A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.
IAO_0000117: PERSON:Chris Stoeckert
IAO_0000117: PERSON:James Malone
IAO_0000117: PERSON:Melanie Courtot
IAO_0000119: WEB: http://www.graphpad.com/www/book/survive.htm
IAO_0000231: IAO_0000103
deprecated: true

obsolete_establishing a CRID registry
type: Class
subclass of: ObsoleteClass
IAO_0000115: a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.
IAO_0000116: MC, 20101124: deprecated following discussion at IAO call 20101124. Term was deemed not necessary - no use case for now.
IAO_0000231: IAO_0000103
deprecated: true

obsolete_other
type: NamedIndividual
IAO_0000116: This is to be used if none of the existing instances cover the reason for obsolescence. An editor note should indicate this new reason.
IAO_0000116: We expect to be able to mine these new reasons and add instances as required.
deprecated: true