{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Using dill to pickle anything" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "IPython.parallel doesn't do much in the way of serialization.\n", "It has custom zero-copy handling of numpy arrays,\n", "but other than that, it doesn't do anything other than the bare minimum to make basic interactively defined functions and classes sendable.\n", "\n", "There are a few projects that extend pickle to make just about anything sendable, and one of these is [dill](http://www.cacr.caltech.edu/~mmckerns/dill).\n", "\n", "To install dill:\n", " \n", " pip install --pre dill" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "First, as always, we create a task function, this time with a closure" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "collapsed": false }, "outputs": [], "source": [ "def make_closure(a):\n", " \"\"\"make a function with a closure, and return it\"\"\"\n", " def has_closure(b):\n", " return a * b\n", " return has_closure" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": false }, "outputs": [], "source": [ "closed = make_closure(5)" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "10" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "closed(2)" ] }, { "cell_type": "code", "execution_count": 4, "metadata": { "collapsed": false }, "outputs": [], "source": [ "import pickle" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Without help, pickle can't deal with closures" ] }, { "cell_type": "code", "execution_count": 5, "metadata": { "collapsed": false }, "outputs": [ { "ename": "PicklingError", "evalue": "Can't pickle : it's not found as __main__.has_closure", "output_type": "error", "traceback": [ "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[1;31mPicklingError\u001b[0m Traceback (most recent call last)", "\u001b[1;32m\u001b[0m in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mpickle\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mdumps\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mclosed\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[1;32m/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.pyc\u001b[0m in \u001b[0;36mdumps\u001b[1;34m(obj, protocol)\u001b[0m\n\u001b[0;32m 1372\u001b[0m \u001b[1;32mdef\u001b[0m \u001b[0mdumps\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mobj\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mprotocol\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mNone\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 1373\u001b[0m \u001b[0mfile\u001b[0m \u001b[1;33m=\u001b[0m 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\u001b[0;36msave\u001b[1;34m(self, obj)\u001b[0m\n\u001b[0;32m 284\u001b[0m \u001b[0mf\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mdispatch\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mt\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 285\u001b[0m \u001b[1;32mif\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 286\u001b[1;33m \u001b[0mf\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mobj\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;31m# Call unbound method with explicit self\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 287\u001b[0m \u001b[1;32mreturn\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 288\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n", "\u001b[1;32m/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.pyc\u001b[0m in \u001b[0;36msave_global\u001b[1;34m(self, obj, name, pack)\u001b[0m\n\u001b[0;32m 746\u001b[0m raise PicklingError(\n\u001b[0;32m 747\u001b[0m \u001b[1;34m\"Can't pickle %r: it's not found as %s.%s\"\u001b[0m \u001b[1;33m%\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 748\u001b[1;33m (obj, module, name))\n\u001b[0m\u001b[0;32m 749\u001b[0m \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 750\u001b[0m \u001b[1;32mif\u001b[0m \u001b[0mklass\u001b[0m \u001b[1;32mis\u001b[0m \u001b[1;32mnot\u001b[0m \u001b[0mobj\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n", "\u001b[1;31mPicklingError\u001b[0m: Can't pickle : it's not found as __main__.has_closure" ] } ], "source": [ "pickle.dumps(closed)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "But after we import dill, magic happens" ] }, { "cell_type": "code", "execution_count": 6, "metadata": { "collapsed": false }, "outputs": [], "source": [ "import dill" ] }, { "cell_type": "code", "execution_count": 7, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "\"cdill.dill\\n_load_type\\np0\\n(S'FunctionType'\\np1\\ntp2\\nRp3\\n(cdill.dill...\"" ] }, "execution_count": 7, "metadata": {}, "output_type": "execute_result" } ], "source": [ "pickle.dumps(closed)[:64] + '...'" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "So from now on, pretty much everything is pickleable." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Now use this in IPython.parallel" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "As usual, we start by creating our Client and View" ] }, { "cell_type": "code", "execution_count": 8, "metadata": { "collapsed": false }, "outputs": [], "source": [ "from IPython import parallel\n", "rc = parallel.Client()\n", "view = rc.load_balanced_view()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's try sending our function with a closure:" ] }, { "cell_type": "code", "execution_count": 9, "metadata": { "collapsed": false }, "outputs": [ { "ename": "ValueError", "evalue": "Sorry, cannot pickle code objects with closures", "output_type": "error", "traceback": [ "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[1;31mValueError\u001b[0m Traceback (most recent call last)", "\u001b[1;32m\u001b[0m in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mview\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mapply_sync\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mclosed\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m3\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[1;32m/Users/minrk/dev/ip/mine/IPython/parallel/client/view.pyc\u001b[0m in \u001b[0;36mapply_sync\u001b[1;34m(self, f, *args, **kwargs)\u001b[0m\n", "\u001b[1;32m/Users/minrk/dev/ip/mine/IPython/parallel/client/view.pyc\u001b[0m in \u001b[0;36mspin_after\u001b[1;34m(f, self, *args, **kwargs)\u001b[0m\n\u001b[0;32m 73\u001b[0m \u001b[1;32mdef\u001b[0m \u001b[0mspin_after\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mf\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m*\u001b[0m\u001b[0margs\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 74\u001b[0m \u001b[1;34m\"\"\"call spin after the method.\"\"\"\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 75\u001b[1;33m \u001b[0mret\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m*\u001b[0m\u001b[0margs\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 76\u001b[0m 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"\u001b[1;32m/Users/minrk/dev/ip/mine/IPython/parallel/client/view.pyc\u001b[0m in \u001b[0;36msave_ids\u001b[1;34m(f, self, *args, **kwargs)\u001b[0m\n\u001b[0;32m 49\u001b[0m \u001b[0mn_previous\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mlen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mclient\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mhistory\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 50\u001b[0m \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 51\u001b[1;33m \u001b[0mret\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m*\u001b[0m\u001b[0margs\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 52\u001b[0m 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closures\"\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 39\u001b[0m args = [co.co_argcount, co.co_nlocals, co.co_stacksize,\n\u001b[0;32m 40\u001b[0m \u001b[0mco\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mco_flags\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mco\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mco_code\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mco\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mco_consts\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mco\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mco_names\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n", "\u001b[1;31mValueError\u001b[0m: Sorry, cannot pickle code objects with closures" ] } ], "source": [ "view.apply_sync(closed, 3)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Oops, no dice. For IPython to work with dill,\n", "there are one or two more steps. IPython will do these for you if you call `DirectView.use_dill`:" ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "rc[:].use_dill()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This is equivalent to\n", "\n", "```python\n", "from IPython.utils.pickleutil import use_dill\n", "use_dill()\n", "rc[:].apply(use_dill)\n", "```" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's try again" ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "15" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "view.apply_sync(closed, 3)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Yay! Now we can use dill to allow IPython.parallel to send anything.\n", "\n", "And that's it! We can send closures and other previously non-pickleables to our engines.\n", "\n", "Let's give it a try now:" ] }, { "cell_type": "code", "execution_count": 12, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "20" ] }, "execution_count": 12, "metadata": {}, "output_type": "execute_result" } ], "source": [ "remote_closure = view.apply_sync(make_closure, 4)\n", "remote_closure(5)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "But wait, there's more!\n", "\n", "At this point, we can send/recv all kinds of stuff" ] }, { "cell_type": "code", "execution_count": 13, "metadata": { "collapsed": false }, "outputs": [], "source": [ "def outer(a):\n", " def inner(b):\n", " def inner_again(c):\n", " return c * b * a\n", " return inner_again\n", " return inner" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "So outer returns a function with a closure, which returns a function with a closure.\n", "\n", "Now, we can resolve the first closure on the engine, the second here, and the third on a different engine,\n", "after passing through a lambda we define here and call there, just for good measure." ] }, { "cell_type": "code", "execution_count": 14, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "6" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "view.apply_sync(lambda f: f(3),view.apply_sync(outer, 1)(2))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "And for good measure, let's test that normal execution still works:" ] }, { "cell_type": "code", "execution_count": 15, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[5, 5, 5, 5, 5, 5, 5, 5]\n" ] }, { "data": { "text/plain": [ "[10, 10, 10, 10, 10, 10, 10, 10]" ] }, "execution_count": 15, "metadata": {}, "output_type": "execute_result" } ], "source": [ "%px foo = 5\n", "\n", "print(rc[:]['foo'])\n", "rc[:]['bar'] = lambda : 2 * foo\n", "rc[:].apply_sync(parallel.Reference('bar'))" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "And test that the `@interactive` decorator works" ] }, { "cell_type": "code", "execution_count": 16, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Overwriting testdill.py\n" ] } ], "source": [ "%%file testdill.py\n", "from IPython.parallel import interactive\n", "\n", "@interactive\n", "class C(object):\n", " a = 5\n", "\n", "@interactive\n", "class D(C):\n", " b = 10\n", "\n", "@interactive\n", "def foo(a):\n", " return a * b\n" ] }, { "cell_type": "code", "execution_count": 17, "metadata": { "collapsed": false }, "outputs": [], "source": [ "import testdill" ] }, { "cell_type": "code", "execution_count": 18, "metadata": { "collapsed": false }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "5 10\n" ] } ], "source": [ "v = rc[-1]\n", "v['D'] = testdill.D\n", "d = v.apply_sync(lambda : D())\n", "print d.a, d.b" ] }, { "cell_type": "code", "execution_count": 19, "metadata": { "collapsed": false }, "outputs": [ { "data": { "text/plain": [ "50" ] }, "execution_count": 19, "metadata": {}, "output_type": "execute_result" } ], "source": [ "v['b'] = 10\n", "v.apply_sync(testdill.foo, 5)" ] } ], "metadata": { "gist_id": "5241793", "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.4.2" } }, "nbformat": 4, "nbformat_minor": 0 }