{ "cells": [ { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ "# Data pre-processing\n", "## 1. Download dataset\n", "8,640 cells from the melanoma WM989 cell line were sequenced using Drop-seq,\n", "where 32,287 genes were detected ([MELANOMA](https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE99330&format=file&file=GSE99330%5FdropseqHumanDge%2Etxt%2Egz)).\n", "In addition, RNA FISH experiment\n", "of across 7,000-88,000 cells from the same cell line was conducted and 26\n", "genes were detected ([MELANOMA_FISH](https://www.dropbox.com/s/ia9x0iom6dwueix/fishSubset.txt?dl=0))." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "pycharm": { "is_executing": false, "name": "#%%\n" } }, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "import h5py" ] }, { "cell_type": "markdown", "metadata": { "pycharm": { "name": "#%% md\n" } }, "source": [ "Download melanoma RNA-seq data for imputation." ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "pycharm": { "is_executing": false, "name": "#%%\n" } }, "outputs": [], "source": [ "melanoma_rnaseq_path = \"E:/DISC/reproducibility/data/MELANOMA/original_data/GSE99330_dropseqHumanDge.txt.gz\"\n", "melanoma_rnaseq_pd = pd.read_csv(melanoma_rnaseq_path, sep=\" \", compression='gzip', index_col=0, skiprows=1)" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "pycharm": { "is_executing": false }, "scrolled": true }, "outputs": [ { "data": { "text/plain": " CTCGCGAGTAGC CGGAGGCACTCG GCAAGTCGATAT \\\nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 0 0 0 \nAAK1 0 0 0 \nAAMDC 0 0 0 \nAAMP 0 0 0 \nAANAT 0 0 0 \nAAR2 0 0 0 \nAARD 0 0 0 \nAARS 0 0 0 \nAARS2 0 0 0 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 1 \nAASS 0 0 1 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 0 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 0 0 \nZWINT 0 0 0 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 0 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 0 \nZZZ3 0 0 0 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n GGACAATTTGTA TGACAATTGACC TAAGACTTCCCT \\\nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 1 0 0 \nAAK1 0 0 1 \nAAMDC 0 0 0 \nAAMP 0 0 1 \nAANAT 0 0 0 \nAAR2 0 0 0 \nAARD 0 0 0 \nAARS 0 0 0 \nAARS2 0 0 0 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 3 \nAASS 0 0 1 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 1 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 0 2 \nZWINT 0 0 1 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 1 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 0 \nZZZ3 0 0 1 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n GAGGAAGGACTC GAAACGGACAGA TCGATTGGAGAA \\\nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 0 0 0 \nAAK1 0 0 0 \nAAMDC 0 0 0 \nAAMP 1 1 0 \nAANAT 0 0 0 \nAAR2 0 0 0 \nAARD 0 0 0 \nAARS 0 0 0 \nAARS2 0 0 0 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 0 \nAASS 0 0 0 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 2 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 0 0 \nZWINT 0 0 0 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 0 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 0 \nZZZ3 0 0 0 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n ATCTAGTCCCCA ... AGCCCTGACAAC \\\nA1BG 0 ... 0 \nA1BG-AS1 0 ... 0 \nA1CF 0 ... 0 \nA2M 0 ... 0 \nA2M-AS1 0 ... 0 \nA2ML1 0 ... 0 \nA2ML1-AS1 0 ... 0 \nA2MP1 0 ... 0 \nA3GALT2 0 ... 0 \nA4GALT 0 ... 0 \nAAAS 0 ... 0 \nAACS 0 ... 0 \nAADACL3 0 ... 0 \nAADAT 0 ... 0 \nAAED1 0 ... 0 \nAAGAB 0 ... 0 \nAAK1 0 ... 0 \nAAMDC 0 ... 0 \nAAMP 0 ... 0 \nAANAT 0 ... 0 \nAAR2 0 ... 0 \nAARD 0 ... 0 \nAARS 0 ... 0 \nAARS2 0 ... 0 \nAARSD1 0 ... 0 \nAASDH 0 ... 0 \nAASDHPPT 0 ... 2 \nAASS 0 ... 0 \nAATF 0 ... 0 \nAATK 0 ... 0 \n... ... ... ... \nZSCAN5A 0 ... 0 \nZSCAN9 0 ... 0 \nZSWIM1 0 ... 0 \nZSWIM3 0 ... 0 \nZSWIM4 0 ... 0 \nZSWIM5 0 ... 0 \nZSWIM6 0 ... 0 \nZSWIM7 0 ... 0 \nZSWIM8 0 ... 0 \nZUFSP 0 ... 0 \nZW10 0 ... 0 \nZWILCH 0 ... 0 \nZWINT 0 ... 0 \nZXDA 0 ... 0 \nZXDB 0 ... 0 \nZXDC 0 ... 0 \nZYG11AP1 0 ... 0 \nZYG11B 0 ... 0 \nZYX 0 ... 1 \nZZEF1 0 ... 0 \nZZZ3 0 ... 0 \nbP-21201H5.1 0 ... 0 \nbP-21264C1.2 0 ... 0 \nbP-2171C21.3 0 ... 0 \nbP-2171C21.4 0 ... 0 \nbP-2171C21.6 0 ... 0 \nbP-2189O9.2 0 ... 0 \nbP-2189O9.3 0 ... 0 \nchr22-38_28785274-29006793.1 0 ... 0 \nyR211F11.2 0 ... 0 \n\n ACTCTCGATTCC GGTCAAATAAGA ACCTCCCCTATA \\\nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 0 0 0 \nAAK1 0 0 0 \nAAMDC 0 0 0 \nAAMP 0 0 0 \nAANAT 0 0 0 \nAAR2 0 0 0 \nAARD 0 0 0 \nAARS 1 0 0 \nAARS2 0 0 0 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 0 \nAASS 0 0 0 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 0 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 0 0 \nZWINT 0 0 0 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 0 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 0 \nZZZ3 0 0 0 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n ACCTCCCCTACC CCATTTTTTCCT TAAAGCGTGTAC \\\nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 0 0 0 \nAAK1 0 1 0 \nAAMDC 0 0 0 \nAAMP 0 0 0 \nAANAT 0 0 0 \nAAR2 0 0 1 \nAARD 0 0 0 \nAARS 0 0 1 \nAARS2 0 0 0 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 0 \nAASS 0 0 0 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 0 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 0 0 \nZWINT 0 0 0 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 0 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 1 \nZZZ3 0 0 3 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n GATCAGAAGGTA AGCGAGACGATG ATTCTTGTGTAC \nA1BG 0 0 0 \nA1BG-AS1 0 0 0 \nA1CF 0 0 0 \nA2M 0 0 0 \nA2M-AS1 0 0 0 \nA2ML1 0 0 0 \nA2ML1-AS1 0 0 0 \nA2MP1 0 0 0 \nA3GALT2 0 0 0 \nA4GALT 0 0 0 \nAAAS 0 0 0 \nAACS 0 0 0 \nAADACL3 0 0 0 \nAADAT 0 0 0 \nAAED1 0 0 0 \nAAGAB 0 0 0 \nAAK1 0 0 0 \nAAMDC 0 0 2 \nAAMP 0 0 0 \nAANAT 0 0 0 \nAAR2 0 0 0 \nAARD 0 0 0 \nAARS 0 0 0 \nAARS2 0 0 2 \nAARSD1 0 0 0 \nAASDH 0 0 0 \nAASDHPPT 0 0 0 \nAASS 0 0 0 \nAATF 0 0 0 \nAATK 0 0 0 \n... ... ... ... \nZSCAN5A 0 0 0 \nZSCAN9 0 0 0 \nZSWIM1 0 0 0 \nZSWIM3 0 0 0 \nZSWIM4 0 0 0 \nZSWIM5 0 0 0 \nZSWIM6 0 0 0 \nZSWIM7 0 0 0 \nZSWIM8 0 0 0 \nZUFSP 0 0 0 \nZW10 0 0 0 \nZWILCH 0 1 0 \nZWINT 0 0 0 \nZXDA 0 0 0 \nZXDB 0 0 0 \nZXDC 0 0 0 \nZYG11AP1 0 0 0 \nZYG11B 0 0 0 \nZYX 0 0 0 \nZZEF1 0 0 0 \nZZZ3 0 0 1 \nbP-21201H5.1 0 0 0 \nbP-21264C1.2 0 0 0 \nbP-2171C21.3 0 0 0 \nbP-2171C21.4 0 0 0 \nbP-2171C21.6 0 0 0 \nbP-2189O9.2 0 0 0 \nbP-2189O9.3 0 0 0 \nchr22-38_28785274-29006793.1 0 0 0 \nyR211F11.2 0 0 0 \n\n[32287 rows x 8640 columns]", "text/html": "
\n | CTCGCGAGTAGC | \nCGGAGGCACTCG | \nGCAAGTCGATAT | \nGGACAATTTGTA | \nTGACAATTGACC | \nTAAGACTTCCCT | \nGAGGAAGGACTC | \nGAAACGGACAGA | \nTCGATTGGAGAA | \nATCTAGTCCCCA | \n... | \nAGCCCTGACAAC | \nACTCTCGATTCC | \nGGTCAAATAAGA | \nACCTCCCCTATA | \nACCTCCCCTACC | \nCCATTTTTTCCT | \nTAAAGCGTGTAC | \nGATCAGAAGGTA | \nAGCGAGACGATG | \nATTCTTGTGTAC | \n
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A1BG | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A1BG-AS1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A1CF | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A2M | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A2M-AS1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A2ML1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A2ML1-AS1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A2MP1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A3GALT2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
A4GALT | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AAAS | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AACS | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AADACL3 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AADAT | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AAED1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AAGAB | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AAK1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n
AAMDC | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n2 | \n
AAMP | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n1 | \n1 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AANAT | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AAR2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n
AARD | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AARS | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n
AARS2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n2 | \n
AARSD1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AASDH | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AASDHPPT | \n0 | \n0 | \n1 | \n0 | \n0 | \n3 | \n0 | \n0 | \n0 | \n0 | \n... | \n2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AASS | \n0 | \n0 | \n1 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AATF | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
AATK | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n... | \n
ZSCAN5A | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSCAN9 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM3 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM4 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM5 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM6 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM7 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n2 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZSWIM8 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZUFSP | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZW10 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZWILCH | \n0 | \n0 | \n0 | \n0 | \n0 | \n2 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n
ZWINT | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZXDA | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZXDB | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZXDC | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZYG11AP1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZYG11B | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZYX | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
ZZEF1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n
ZZZ3 | \n0 | \n0 | \n0 | \n0 | \n0 | \n1 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n3 | \n0 | \n0 | \n1 | \n
bP-21201H5.1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-21264C1.2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-2171C21.3 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-2171C21.4 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-2171C21.6 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-2189O9.2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
bP-2189O9.3 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
chr22-38_28785274-29006793.1 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
yR211F11.2 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n... | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n0 | \n
32287 rows × 8640 columns
\n\n | fish1.1 | \nfish1.2 | \nfish1.3 | \nfish1.4 | \nfish1.5 | \nfish1.6 | \nfish1.8 | \nfish1.9 | \nfish1.10 | \nfish1.11 | \n... | \nfish7.21305 | \nfish7.21306 | \nfish7.21307 | \nfish7.21308 | \nfish7.21309 | \nfish7.21310 | \nfish7.21311 | \nfish7.21312 | \nfish7.21313 | \nfish7.21314 | \n
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EGFR | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n1.0 | \n0.0 | \n2.0 | \n0.0 | \n... | \n2.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n4.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n
SOX10 | \n191.0 | \n115.0 | \n86.0 | \n40.0 | \n74.0 | \n97.0 | \n151.0 | \n98.0 | \n97.0 | \n167.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
CCNA2 | \n2.0 | \n2.0 | \n7.0 | \n4.0 | \n4.0 | \n5.0 | \n10.0 | \n7.0 | \n14.0 | \n15.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
GAPDH | \n270.0 | \n241.0 | \n192.0 | \n87.0 | \n149.0 | \n165.0 | \n267.0 | \n199.0 | \n292.0 | \n225.0 | \n... | \n183.0 | \n306.0 | \n142.0 | \n114.0 | \n462.0 | \n1031.0 | \n60.0 | \n51.0 | \n105.0 | \n41.0 | \n
WNT5A | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
PDGFRB | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
PDGFC | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
SERPINE1 | \n21.0 | \n7.0 | \n4.0 | \n0.0 | \n2.0 | \n6.0 | \n16.0 | \n2.0 | \n7.0 | \n12.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
NGFR | \n4.0 | \n8.0 | \n4.0 | \n2.0 | \n1.0 | \n4.0 | \n5.0 | \n1.0 | \n2.0 | \n3.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
NRG1 | \n1.0 | \n5.0 | \n0.0 | \n1.0 | \n2.0 | \n1.0 | \n11.0 | \n3.0 | \n2.0 | \n6.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
FOSL1 | \n3.0 | \n3.0 | \n3.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n3.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
VEGFC | \n11.0 | \n19.0 | \n2.0 | \n3.0 | \n4.0 | \n6.0 | \n4.0 | \n4.0 | \n2.0 | \n2.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
AXL | \n3.0 | \n1.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n1.0 | \n0.0 | \n1.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
MITF | \n34.0 | \n20.0 | \n10.0 | \n8.0 | \n12.0 | \n14.0 | \n40.0 | \n31.0 | \n30.0 | \n14.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
LOXL2 | \n4.0 | \n43.0 | \n8.0 | \n0.0 | \n1.0 | \n7.0 | \n28.0 | \n7.0 | \n8.0 | \n17.0 | \n... | \n38.0 | \n0.0 | \n1.0 | \n2.0 | \n11.0 | \n14.0 | \n1.0 | \n7.0 | \n7.0 | \n1.0 | \n
RUNX2 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
FGFR1 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
JUN | \n0.0 | \n4.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n1.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
VGF | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
BABAM1 | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
KDM5A | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
LMNA | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
KDM5B | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
C1S | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
VCL | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n
TXNRD1 | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \nNaN | \n... | \n40.0 | \n68.0 | \n19.0 | \n12.0 | \n42.0 | \n154.0 | \n9.0 | \n4.0 | \n5.0 | \n24.0 | \n
26 rows × 88040 columns
\n\n | fish1.1 | \nfish1.2 | \nfish1.3 | \nfish1.4 | \nfish1.5 | \nfish1.6 | \nfish1.8 | \nfish1.9 | \nfish1.10 | \nfish1.11 | \n... | \nfish7.21305 | \nfish7.21306 | \nfish7.21307 | \nfish7.21308 | \nfish7.21309 | \nfish7.21310 | \nfish7.21311 | \nfish7.21312 | \nfish7.21313 | \nfish7.21314 | \n
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EGFR | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n1.0 | \n0.0 | \n2.0 | \n0.0 | \n... | \n2.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n4.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n
SOX10 | \n191.0 | \n115.0 | \n86.0 | \n40.0 | \n74.0 | \n97.0 | \n151.0 | \n98.0 | \n97.0 | \n167.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
CCNA2 | \n2.0 | \n2.0 | \n7.0 | \n4.0 | \n4.0 | \n5.0 | \n10.0 | \n7.0 | \n14.0 | \n15.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
GAPDH | \n270.0 | \n241.0 | \n192.0 | \n87.0 | \n149.0 | \n165.0 | \n267.0 | \n199.0 | \n292.0 | \n225.0 | \n... | \n183.0 | \n306.0 | \n142.0 | \n114.0 | \n462.0 | \n1031.0 | \n60.0 | \n51.0 | \n105.0 | \n41.0 | \n
WNT5A | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
PDGFRB | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
PDGFC | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
SERPINE1 | \n21.0 | \n7.0 | \n4.0 | \n0.0 | \n2.0 | \n6.0 | \n16.0 | \n2.0 | \n7.0 | \n12.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
NGFR | \n4.0 | \n8.0 | \n4.0 | \n2.0 | \n1.0 | \n4.0 | \n5.0 | \n1.0 | \n2.0 | \n3.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
NRG1 | \n1.0 | \n5.0 | \n0.0 | \n1.0 | \n2.0 | \n1.0 | \n11.0 | \n3.0 | \n2.0 | \n6.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
FOSL1 | \n3.0 | \n3.0 | \n3.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n3.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
VEGFC | \n11.0 | \n19.0 | \n2.0 | \n3.0 | \n4.0 | \n6.0 | \n4.0 | \n4.0 | \n2.0 | \n2.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
AXL | \n3.0 | \n1.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n1.0 | \n0.0 | \n1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
MITF | \n34.0 | \n20.0 | \n10.0 | \n8.0 | \n12.0 | \n14.0 | \n40.0 | \n31.0 | \n30.0 | \n14.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
LOXL2 | \n4.0 | \n43.0 | \n8.0 | \n0.0 | \n1.0 | \n7.0 | \n28.0 | \n7.0 | \n8.0 | \n17.0 | \n... | \n38.0 | \n0.0 | \n1.0 | \n2.0 | \n11.0 | \n14.0 | \n1.0 | \n7.0 | \n7.0 | \n1.0 | \n
RUNX2 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
FGFR1 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
JUN | \n0.0 | \n4.0 | \n1.0 | \n0.0 | \n0.0 | \n0.0 | \n1.0 | \n1.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
VGF | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n0.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
BABAM1 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
KDM5A | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
LMNA | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
KDM5B | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
C1S | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
VCL | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n
TXNRD1 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n-1.0 | \n... | \n40.0 | \n68.0 | \n19.0 | \n12.0 | \n42.0 | \n154.0 | \n9.0 | \n4.0 | \n5.0 | \n24.0 | \n
26 rows × 88040 columns
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