track name=Virus_Recombinations description="Virus_Recombinations" graphType=junctions
NC_045512.2_pilon	70	21557	Deletion	432	+	1246	11971	ATCTCTTGTAGATCTGTTCTCTAAA|CGAACTTTAAAATCTGTGTGGCTGT	AGTGATGTTCTTGTTAACAACTAAA|CGAACAATGTTTGTTTTTCTTGTTT
NC_045512.2_pilon	70	28261	Deletion	117	+	1246	2810	ATCTCTTGTAGATCTGTTCTCTAAA|CGAACTTTAAAATCTGTGTGGCTGT	CGTGTTGTTTTAGATTTCATCTAAA|CGAACAAACTAAATGTCTCTAAATG
NC_045512.2_pilon	73	26241	Deletion	89	+	1281	11172	TCTTGTAGATCTGTTCTCTAAACGA|ACTTTAAAATCTGTGTGGCTGTCAC	TGTAAGCACAAGCTGATGAGTACGA|ACTTATGTACTCATTCGTTTCGGAA
NC_045512.2_pilon	3545	3549	Deletion	80	+	14297	14308	GAATCTGATGATTACATAGCTACTA|ATGGACCACTTAAAGTGGGTGGTAG	TCTGATGATTACATAGCTACTAATG|GACCACTTAAAGTGGGTGGTAGTTG
NC_045512.2_pilon	72	27044	Deletion	60	+	1285	5407	CTCTTGTAGATCTGTTCTCTAAACG|AACTTTAAAATCTGTGTGGCTGTCA	AAGAAATCACTGTTGCTACATCACG|AACGCTTTCTTATTACAAATTGGGA
NC_045512.2_pilon	71	27390	Deletion	40	+	1284	1307	TCTCTTGTAGATCTGTTCTCTAAAC|GAACTTTAAAATCTGTGTGGCTGTC	AGCAACCAATGGAGATTGATTAAAC|GAACATGAAAATTATTCTTTTCTTG
NC_045512.2_pilon	27190	27222	Deletion	31	+	10771	12411	ACAATATTGCTTTGCTTGTACAGTA|AGTGACAACAGATGTTTCATCTCGT	AACAGATGTTTCATCTCGTTGACTT|TCAGGTTACTATAGCAGAGATATTA
NC_045512.2_pilon	72	25388	Deletion	31	+	1285	880	CTCTTGTAGATCTGTTCTCTAAACG|AACTTTAAAATCTGTGTGGCTGTCA	AGTCAAATTACATTACACATAAACG|AACTTATGGATTTGTTTATGAGAAT
NC_045512.2_pilon	29173	27802	Duplication	30	+	9607	2416	CAGACAAGGAACTGATTACAAACAT|TGGCCGCAAATTGCACAATTTGCCC	GACTTCTATTTGTGCTTTTTAGCCT|TTCTGCTATTCCTTGTTTTAATTAT
NC_045512.2_pilon	685	695	Deletion	28	+	4094	4299	TGGCCATAGTTACGGCGCCGATCTA|AAGTCATTTGACTTAGGCGACGAGC	TTACGGCGCCGATCTAAAGTCATTT|GACTTAGGCGACGAGCTTGGCACTG
NC_045512.2_pilon	6044	6048	Deletion	24	+	11674	11793	CCATATCCAAACGCAAGCTTCGATA|ATTTTAAGTTTGTATGTGATAATAT	TATCCAAACGCAAGCTTCGATAATT|TTAAGTTTGTATGTGATAATATCAA
NC_045512.2_pilon	26156	26160	Deletion	22	+	9590	9825	ACACAATCGACGGTTCATCCGGAGT|TGTTAATCCAGTAATGGAACCAATT	CAATCGACGGTTCATCCGGAGTTGT|TAATCCAGTAATGGAACCAATTTAT
NC_045512.2_pilon	26283	26287	Deletion	20	+	11504	11513	TTCGGAAGAGACAGGTACGTTAATA|GTTAATAGCGTACTTCTTTTTCTTG	GGAAGAGACAGGTACGTTAATAGTT|AATAGCGTACTTCTTTTTCTTGCTT
NC_045512.2_pilon	14852	14857	Deletion	20	+	8696	8761	TGTGTGATATCAGACAACTACTATT|TGTAGTTGAAGTTGTTGATAAGTAC	TGATATCAGACAACTACTATTTGTA|GTTGAAGTTGTTGATAAGTACTTTG
NC_045512.2_pilon	11076	11081	Deletion	20	+	16352	16770	AGAGTACTCAATGGTCTTTGTTCTT|TTTTTTGTATGAAAATGCCTTTTTA	TACTCAATGGTCTTTGTTCTTTTTT|TTGTATGAAAATGCCTTTTTACCTT
NC_045512.2_pilon	4740	4744	Deletion	20	+	10242	10328	CAGCGTATAATGGTTATCTTACTTC|TTCTTCTAAAACACCTGAAGAACAT	CGTATAATGGTTATCTTACTTCTTC|TTCTAAAACACCTGAAGAACATTTT
NC_045512.2_pilon	29735	29750	Deletion	19	+	45155	47234	GAAAGAGCCACCACATTTTCACCGA|GGCCACGCGGAGTACGATCGAGTGT	ATTTTCACCGAGGCCACGCGGAGTA|CGATCGAGTGTACAGTGAACAATGC
NC_045512.2_pilon	3545	3558	Deletion	18	+	14297	14005	GAATCTGATGATTACATAGCTACTA|ATGGACCACTTAAAGTGGGTGGTAG	TACATAGCTACTAATGGACCACTTA|AAGTGGGTGGTAGTTGTGTTTTAAG
NC_045512.2_pilon	4468	14807	Deletion	18	+	7305	6329	GGAAACTAAAGCCATAGTTTCAACT|ATACAGCGTAAATATAAGGGTATTA	GCTGCTATCAGCGATTATGACTACT|ATCGTTATAATCTACCAACAATGTG
NC_045512.2_pilon	17201	17207	Deletion	17	+	3865	4034	TTGATGCACTATGTGAGAAGGCATT|AAAATATTTGCCTATAGATAAATGT	GCACTATGTGAGAAGGCATTAAAAT|ATTTGCCTATAGATAAATGTAGTAG
NC_045512.2_pilon	4531	4558	Deletion	17	+	3218	3552	TGTGGTTGATTATGGTGCTAGATTT|TACTTTTACACCAGTAAAACAACTG	ACTTTTACACCAGTAAAACAACTGT|AGCGTCACTTATCAACACACTTAAC
NC_045512.2_pilon	28992	28996	Deletion	17	+	5053	5308	GCAAAATGTTTGGTAAAGGCCAACA|ACAACAAGGCCAAACTGTCACTAAG	AAATGTTTGGTAAAGGCCAACAACA|ACAAGGCCAAACTGTCACTAAGAAA
NC_045512.2_pilon	14901	14911	Deletion	17	+	8744	8675	CTTTGATTGTTACGATGGTGGCTGT|ATTAATGCTAACCAAGTCATCGTCA	TTACGATGGTGGCTGTATTAATGCT|AACCAAGTCATCGTCAACAACCTAG
NC_045512.2_pilon	29442	29323	Duplication	17	+	2215	3324	TACCGCAGAGACAGAAGAAACAGCA|AACTGTGACTCTTCTTCCTGCTGCA	AAGATCCAAATTTCAAAGATCAAGT|CATTTTGCTGAATAAGCATATTGAC
NC_045512.2_pilon	11434	11441	Deletion	17	+	10011	10311	GACACTCGTTTATAAAGTTTATTAT|GGTAATGCTTTAGATCAAGCCATTT	CGTTTATAAAGTTTATTATGGTAAT|GCTTTAGATCAAGCCATTTCCATGT
NC_045512.2_pilon	508	524	Deletion	17	+	4084	3977	TTCGGATGCTCGAACTGCACCTCAT|GGTCATGTTATGGTTGAGCTGGTAG	TGCACCTCATGGTCATGTTATGGTT|GAGCTGGTAGCAGAACTCGAAGGCA
NC_045512.2_pilon	26781	26819	Deletion	16	+	4077	4949	GGAATTGCTATCGCAATGGCTTGTC|TTGTAGGCTTGATGTGGCTCAGCTA	TGTGGCTCAGCTACTTCATTGCTTC|TTTCAGACTGTTTGCGCGTACGCGT
NC_045512.2_pilon	510	525	Deletion	16	+	4037	4016	CGGATGCTCGAACTGCACCTCATGG|TCATGTTATGGTTGAGCTGGTAGCA	GCACCTCATGGTCATGTTATGGTTG|AGCTGGTAGCAGAACTCGAAGGCAT
NC_045512.2_pilon	12151	12156	Deletion	16	+	2011	2275	TGCAGCTTTTGCTACTGCTCAAGAA|GCTTATGAGCAGGCTGTTGCTAATG	GCTTTTGCTACTGCTCAAGAAGCTT|ATGAGCAGGCTGTTGCTAATGGTGA
NC_045512.2_pilon	18737	18742	Deletion	16	+	4971	4862	CCTGTTGGCATCATTCTATTGGATT|TGATTACGTCTATAATCCGTTTATG	TTGGCATCATTCTATTGGATTTGAT|TACGTCTATAATCCGTTTATGATTG
NC_045512.2_pilon	19517	19521	Deletion	15	+	16241	16500	GACATCATGCTAATGAGTACAGATT|GTATCTCGATGCTTATAACATGATG	ATCATGCTAATGAGTACAGATTGTA|TCTCGATGCTTATAACATGATGATC
NC_045512.2_pilon	26201	26205	Deletion	15	+	12828	12937	CAATTTATGATGAACCGACGACGAC|TACTAGCGTGCCTTTGTAAGCACAA	TTTATGATGAACCGACGACGACTAC|TAGCGTGCCTTTGTAAGCACAAGCT
NC_045512.2_pilon	70	26474	Deletion	15	+	1246	375	ATCTCTTGTAGATCTGTTCTCTAAA|CGAACTTTAAAATCTGTGTGGCTGT	AGAGTTCCTGATCTTCTGGTCTAAA|CGAACTAAATATTATATTAGTTTTT
NC_045512.2_pilon	27794	29194	Deletion	15	+	2389	10201	ATTAATTGACTTCTATTTGTGCTTT|TTAGCCTTTCTGCTATTCCTTGTTT	AACATTGGCCGCAAATTGCACAATT|TGCCCCCAGCGCTTCAGCGTTCTTC
NC_045512.2_pilon	26786	26821	Deletion	14	+	4319	5005	TGCTATCGCAATGGCTTGTCTTGTA|GGCTTGATGTGGCTCAGCTACTTCA	TGGCTCAGCTACTTCATTGCTTCTT|TCAGACTGTTTGCGCGTACGCGTTC
NC_045512.2_pilon	29166	27803	Duplication	14	+	9410	2488	AACTAATCAGACAAGGAACTGATTA|CAAACATTGGCCGCAAATTGCACAA	ACTTCTATTTGTGCTTTTTAGCCTT|TCTGCTATTCCTTGTTTTAATTATG
NC_045512.2_pilon	3059	3063	Deletion	13	+	11046	10998	TTTTACCCTCCAGATGAGGATGAAG|AAGAAGGTGATTGTGAAGAAGAAGA	TACCCTCCAGATGAGGATGAAGAAG|AAGGTGATTGTGAAGAAGAAGAGTT
NC_045512.2_pilon	8766	8778	Deletion	13	+	10119	7414	GTTTTGCTAACAAACATGCTGATTT|TGACACATGGTTTAGCCAGCGTGGT	AAACATGCTGATTTTGACACATGGT|TTAGCCAGCGTGGTGGTAGTTATAC
NC_045512.2_pilon	28889	28904	Deletion	13	+	1267	1797	ACTCCAGGCAGCAGTAAACGAACTT|CTCCTGCTAGAATGGCTGGCAATGG	TAAACGAACTTCTCCTGCTAGAATG|GCTGGCAATGGCGGTGATGCTGCTC
NC_045512.2_pilon	29069	29084	Deletion	13	+	10888	4918	CCTCGGCAAAAACGTACTGCCACTA|AAGCATACAATGTAACACAAGCTTT	TACTGCCACTAAAGCATACAATGTA|ACACAAGCTTTCGGCAGACGTGGTC
NC_045512.2_pilon	11269	11302	Deletion	13	+	8929	10644	GATGCGTATTATGACATGGTTGGAT|ATGGTTGATACTAGTTTGAAGCTAA	ATATGGTTGATACTAGTTTGAAGCT|AAAAGACTGTGTTATGTATGCATCA
NC_045512.2_pilon	29729	29760	Deletion	12	+	44647	47858	GGACTTGAAAGAGCCACCACATTTT|CACCGAGGCCACGCGGAGTACGATC	AGGCCACGCGGAGTACGATCGAGTG|TACAGTGAACAATGCTAGGGAGAGC
NC_045512.2_pilon	7436	7440	Deletion	12	+	8332	8448	ATGTACATCTTCTTTGCATCATTTT|ATTATGTATGGAAAAGTTATGTGCA	TACATCTTCTTTGCATCATTTTATT|ATGTATGGAAAAGTTATGTGCATGT
NC_045512.2_pilon	21592	21600	Deletion	12	+	15279	15290	TGTTTTTCTTGTTTTATTGCCACTA|GTCTCTAGTCAGTGTGTTAATCTTA	CTTGTTTTATTGCCACTAGTCTCTA|GTCAGTGTGTTAATCTTACAACCAG
NC_045512.2_pilon	74	21549	Deletion	12	+	1278	14461	CTTGTAGATCTGTTCTCTAAACGAA|CTTTAAAATCTGTGTGGCTGTCACT	TTATTTCTAGTGATGTTCTTGTTAA|CAACTAAACGAACAATGTTTGTTTT
NC_045512.2_pilon	509	686	Deletion	12	+	4088	4073	TCGGATGCTCGAACTGCACCTCATG|GTCATGTTATGGTTGAGCTGGTAGC	TGGCCATAGTTACGGCGCCGATCTA|AAGTCATTTGACTTAGGCGACGAGC
NC_045512.2_pilon	27268	27301	Deletion	11	+	15757	15298	TTACTAATTATTATGAGGACTTTTA|AAGTTTCCATTTGGAATCTTGATTA	CATTTGGAATCTTGATTACATCATA|AACCTCATAATTAAAAATTTATCTA
NC_045512.2_pilon	27133	27140	Deletion	11	+	7061	7442	ACAGTCGCTACAGGATTGGCAACTA|TAAATTAAACACAGACCATTCCAGT	GCTACAGGATTGGCAACTATAAATT|AAACACAGACCATTCCAGTAGCAGT
NC_045512.2_pilon	18019	18035	Deletion	11	+	8286	8835	TTTACAAGTCTTGAAATTCCACGTA|GGAATGTGGCAACTTTACAAGCTGA	ATTCCACGTAGGAATGTGGCAACTT|TACAAGCTGAAAATGTAACAGGACT
NC_045512.2_pilon	6377	6048	Duplication	11	+	1615	11793	TCAGAGGACGCGCAGGGAATGGATA|ATCTTGCCTGCGAAGATCTAAAACC	TATCCAAACGCAAGCTTCGATAATT|TTAAGTTTGTATGTGATAATATCAA
NC_045512.2_pilon	5538	5542	Deletion	11	+	10625	10822	TGGTGTGTAAAACTTGTGGACAACA|GCAGACAACCCTTAAGGGTGTAGAA	TGTGTAAAACTTGTGGACAACAGCA|GACAACCCTTAAGGGTGTAGAAGCT
NC_045512.2_pilon	11257	11271	Deletion	11	+	6605	9179	TGCTAGTTGGGTGATGCGTATTATG|ACATGGTTGGATATGGTTGATACTA	ATGCGTATTATGACATGGTTGGATA|TGGTTGATACTAGTTTGAAGCTAAA
NC_045512.2_pilon	18737	18744	Deletion	11	+	4971	4934	CCTGTTGGCATCATTCTATTGGATT|TGATTACGTCTATAATCCGTTTATG	GGCATCATTCTATTGGATTTGATTA|CGTCTATAATCCGTTTATGATTGAT
NC_045512.2_pilon	22739	22744	Deletion	10	+	7459	7380	ACTAAATTAAATGATCTCTGCTTTA|CTAATGTCTATGCAGATTCATTTGT	AATTAAATGATCTCTGCTTTACTAA|TGTCTATGCAGATTCATTTGTAATT
NC_045512.2_pilon	29726	29730	Deletion	10	+	47528	44806	GGAGGACTTGAAAGAGCCACCACAT|TTTCACCGAGGCCACGCGGAGTACG	GGACTTGAAAGAGCCACCACATTTT|CACCGAGGCCACGCGGAGTACGATC
NC_045512.2_pilon	5905	5910	Deletion	10	+	7539	7978	TTACACAACAACCATAAAACCAGTT|ACTTATAAATTGGATGGTGTTGTTT	ACAACAACCATAAAACCAGTTACTT|ATAAATTGGATGGTGTTGTTTGTAC
NC_045512.2_pilon	26524	26898	Deletion	10	+	664	6167	TGTTTGGAACTTTAATTTTAGCCAT|GGCAGATTCCAACGGTACTATTACC	CATTCTTCTCAACGTGCCACTCCAT|GGCACTATTCTGACCAGACCGCTTC
NC_045512.2_pilon	29068	29076	Deletion	10	+	10859	11161	GCCTCGGCAAAAACGTACTGCCACT|AAAGCATACAATGTAACACAAGCTT	CAAAAACGTACTGCCACTAAAGCAT|ACAATGTAACACAAGCTTTCGGCAG
NC_045512.2_pilon	9854	9862	Deletion	10	+	1884	2028	ATGTATCTAAAGTTGCGTAGTGATG|TGCTATTACCTCTTACGCAATATAA	TAAAGTTGCGTAGTGATGTGCTATT|ACCTCTTACGCAATATAATAGATAC
NC_045512.2_pilon	29749	29202	Duplication	10	+	47058	10448	ATTTTCACCGAGGCCACGCGGAGTA|CGATCGAGTGTACAGTGAACAATGC	CCGCAAATTGCACAATTTGCCCCCA|GCGCTTCAGCGTTCTTCGGAATGTC
NC_045512.2_pilon	26782	26182	Duplication	10	+	4207	10909	GAATTGCTATCGCAATGGCTTGTCT|TGTAGGCTTGATGTGGCTCAGCTAC	TGTTAATCCAGTAATGGAACCAATT|TATGATGAACCGACGACGACTACTA
NC_045512.2_pilon	1483	1287	Duplication	10	+	2141	7473	TAAGGGTGGTCGCACTATTGCCTTT|GGAGGCTGTGTGTTCTCTTATGTTG	ACGGGCGATTTTGTTAAAGCCACTT|GCGAATTTTGTGGCACTGAGAATTT
NC_045512.2_pilon	20755	13498	Duplication	10	+	7801	4885	TGTGACCTTCAAAATTATGGTGATA|GTGCAACATTACCTAAAGGCATAAT	TTGCGGTGTAAGTGCAGCCCGTCTT|ACACCGTGCGGCACAGGCACTAGTA
NC_045512.2_pilon	29173	27803	Duplication	10	+	9607	2488	CAGACAAGGAACTGATTACAAACAT|TGGCCGCAAATTGCACAATTTGCCC	ACTTCTATTTGTGCTTTTTAGCCTT|TCTGCTATTCCTTGTTTTAATTATG
NC_045512.2_pilon	29184	27797	Duplication	10	+	9496	2415	CTGATTACAAACATTGGCCGCAAAT|TGCACAATTTGCCCCCAGCGCTTCA	TAATTGACTTCTATTTGTGCTTTTT|AGCCTTTCTGCTATTCCTTGTTTTA
NC_045512.2_pilon	27222	25395	Duplication	10	+	12411	993	ACAGATGTTTCATCTCGTTGACTTT|CAGGTTACTATAGCAGAGATATTAC	TTACATTACACATAAACGAACTTAT|GGATTTGTTTATGAGAATCTTCACA
NC_045512.2_pilon	29755	29778	Deletion	9	+	46965	45918	ACCGAGGCCACGCGGAGTACGATCG|AGTGTACAGTGAACAATGCTAGGGA	TCGAGTGTACAGTGAACAATGCTAG|GGAGAGCTGCCTATATGGAAGAGCC
NC_045512.2_pilon	19672	19676	Deletion	9	+	6928	7198	GTAAATAAGGGACACTTTGATGGAC|AACAGGGTGAAGTACCAGTTTCTAT	AATAAGGGACACTTTGATGGACAAC|AGGGTGAAGTACCAGTTTCTATCAT
NC_045512.2_pilon	4530	3681	Duplication	9	+	3173	6515	GTGTGGTTGATTATGGTGCTAGATT|TTACTTTTACACCAGTAAAACAACT	CTTAAGAGTGCTTATGAAAATTTTA|ATCAGCACGAAGTTCTACTTGCACC
NC_045512.2_pilon	27801	29174	Deletion	9	+	2421	9592	GACTTCTATTTGTGCTTTTTAGCCT|TTCTGCTATTCCTTGTTTTAATTAT	CAGACAAGGAACTGATTACAAACAT|TGGCCGCAAATTGCACAATTTGCCC
NC_045512.2_pilon	11485	11501	Deletion	9	+	9586	9402	CATGTGGGCTCTTATAATCTCTGTT|ACTTCTAACTACTCAGGTGTAGTTA	AATCTCTGTTACTTCTAACTACTCA|GGTGTAGTTACAACTGTCATGTTTT
NC_045512.2_pilon	14795	14799	Deletion	9	+	4902	5693	AGGATGGTAATGCTGCTATCAGCGA|TTATGACTACTATCGTTATAATCTA	ATGGTAATGCTGCTATCAGCGATTA|TGACTACTATCGTTATAATCTACCA
NC_045512.2_pilon	29165	27797	Duplication	9	+	9382	2415	GAACTAATCAGACAAGGAACTGATT|ACAAACATTGGCCGCAAATTGCACA	TAATTGACTTCTATTTGTGCTTTTT|AGCCTTTCTGCTATTCCTTGTTTTA
NC_045512.2_pilon	29173	27795	Duplication	9	+	9607	2418	CAGACAAGGAACTGATTACAAACAT|TGGCCGCAAATTGCACAATTTGCCC	ATTAATTGACTTCTATTTGTGCTTT|TTAGCCTTTCTGCTATTCCTTGTTT
NC_045512.2_pilon	28241	27778	Duplication	9	+	2879	2478	TTTAGAGTATCATGACGTTCGTGTT|GTTTTAGATTTCATCTAAACGAACA	AGAATGATTGAACTTTCATTAATTG|ACTTCTATTTGTGCTTTTTAGCCTT
NC_045512.2_pilon	9276	9281	Deletion	8	+	2917	1228	TTTGTGTATCTACTAGTGGTAGATG|GGTACTTAACAATGATTATTACAGA	TGTATCTACTAGTGGTAGATGGGTA|CTTAACAATGATTATTACAGATCTT
NC_045512.2_pilon	17201	17208	Deletion	8	+	3865	4044	TTGATGCACTATGTGAGAAGGCATT|AAAATATTTGCCTATAGATAAATGT	CACTATGTGAGAAGGCATTAAAATA|TTTGCCTATAGATAAATGTAGTAGA
NC_045512.2_pilon	26777	26830	Deletion	8	+	3860	5195	CGGTGGAATTGCTATCGCAATGGCT|TGTCTTGTAGGCTTGATGTGGCTCA	TACTTCATTGCTTCTTTCAGACTGT|TTGCGCGTACGCGTTCCATGTGGTC
NC_045512.2_pilon	16299	16311	Deletion	8	+	4974	5587	ATTAAGATGTGGTGCTTGCATACGT|AGACCATTCTTATGTTGTAAATGCT	GTGCTTGCATACGTAGACCATTCTT|ATGTTGTAAATGCTGTTACGACCAT
NC_045512.2_pilon	8765	8825	Deletion	8	+	10214	12549	TGTTTTGCTAACAAACATGCTGATT|TTGACACATGGTTTAGCCAGCGTGG	TACTAATGACAAAGCTTGCCCATTG|ATTGCTGCAGTCATAACAAGAGAAG
NC_045512.2_pilon	6512	6517	Deletion	8	+	5370	5372	ATTATACTTAAACCAGCAAATAATA|GTTTAAAAATTACAGAAGAGGTTGG	TACTTAAACCAGCAAATAATAGTTT|AAAAATTACAGAAGAGGTTGGCCAC
NC_045512.2_pilon	7739	7743	Deletion	8	+	3351	3371	ACTGACCAGTCTTCTTACATCGTTG|ATAGTGTTACAGTGAAGAATGGTTC	GACCAGTCTTCTTACATCGTTGATA|GTGTTACAGTGAAGAATGGTTCCAT
NC_045512.2_pilon	10944	10660	Duplication	8	+	5897	3605	ATGAATTTACACCTTTTGATGTTGT|TAGACAATGCTCAGGTGTTACTTTC	CTGGTACGGACACAACTATTACAGT|TAATGTTTTAGCTTGGTTGTACGCT
NC_045512.2_pilon	4530	4548	Deletion	8	+	3173	3409	GTGTGGTTGATTATGGTGCTAGATT|TTACTTTTACACCAGTAAAACAACT	GCTAGATTTTACTTTTACACCAGTA|AAACAACTGTAGCGTCACTTATCAA
NC_045512.2_pilon	29471	27796	Duplication	8	+	2589	2407	GTGACTCTTCTTCCTGCTGCAGATT|TGGATGATTTCTCCAAACAATTGCA	TTAATTGACTTCTATTTGTGCTTTT|TAGCCTTTCTGCTATTCCTTGTTTT
NC_045512.2_pilon	12945	24710	Deletion	8	+	8273	1571	CACCTAAAGGTCCTAAAGTGAAGTA|TTTATACTTTATTAAAGGATTAAAC	TTTTTGTGGAAAGGGCTATCATCTT|ATGTCCTTCCCTCAGTCAGCACCTC
NC_045512.2_pilon	24870	12507	Duplication	8	+	4349	7134	TTGTTTCAAATGGCACACACTGGTT|TGTAACACAAAGGAATTTTTATGAA	GTCATACCAGACTATAACACATATA|AAAATACGTGTGATGGTACAACATT
NC_045512.2_pilon	27794	43	Duplication	8	+	2389	403	ATTAATTGACTTCTATTTGTGCTTT|TTAGCCTTTCTGCTATTCCTTGTTT	TCCCAGGTAACAAACCAACCAACTT|TCGATCTCTTGTAGATCTGTTCTCT
NC_045512.2_pilon	3077	3081	Deletion	7	+	12803	13011	GATGAAGAAGAAGGTGATTGTGAAG|AAGAAGAGTTTGAGCCATCAACTCA	GAAGAAGAAGGTGATTGTGAAGAAG|AAGAGTTTGAGCCATCAACTCAATA
NC_045512.2_pilon	3087	2482	Duplication	7	+	6019	3567	AAGGTGATTGTGAAGAAGAAGAGTT|TGAGCCATCAACTCAATATGAGTAT	TGCCTCTAAAAGCCCCAAAAGAAAT|TATCTTCTTAGAGGGAGAAACACTT
NC_045512.2_pilon	3699	3711	Deletion	7	+	7142	7385	ATTTTAATCAGCACGAAGTTCTACT|TGCACCATTATTATCAGCTGGTATT	CACGAAGTTCTACTTGCACCATTAT|TATCAGCTGGTATTTTTGGTGCTGA
NC_045512.2_pilon	26774	26821	Deletion	7	+	3593	5005	CACCGGTGGAATTGCTATCGCAATG|GCTTGTCTTGTAGGCTTGATGTGGC	TGGCTCAGCTACTTCATTGCTTCTT|TCAGACTGTTTGCGCGTACGCGTTC
NC_045512.2_pilon	685	694	Deletion	7	+	4094	4269	TGGCCATAGTTACGGCGCCGATCTA|AAGTCATTTGACTTAGGCGACGAGC	GTTACGGCGCCGATCTAAAGTCATT|TGACTTAGGCGACGAGCTTGGCACT
NC_045512.2_pilon	26777	26820	Deletion	7	+	3860	4958	CGGTGGAATTGCTATCGCAATGGCT|TGTCTTGTAGGCTTGATGTGGCTCA	GTGGCTCAGCTACTTCATTGCTTCT|TTCAGACTGTTTGCGCGTACGCGTT
NC_045512.2_pilon	26574	26284	Duplication	7	+	780	11420	GTTGAAGAGCTTAAAAAGCTCCTTG|AACAATGGAACCTAGTAATAGGTTT	TTCGGAAGAGACAGGTACGTTAATA|GTTAATAGCGTACTTCTTTTTCTTG
NC_045512.2_pilon	27794	29182	Deletion	7	+	2389	9488	ATTAATTGACTTCTATTTGTGCTTT|TTAGCCTTTCTGCTATTCCTTGTTT	GAACTGATTACAAACATTGGCCGCA|AATTGCACAATTTGCCCCCAGCGCT
NC_045512.2_pilon	11099	11106	Deletion	7	+	3766	3776	TTTTTTTTGTATGAAAATGCCTTTT|TACCTTTTGCTATGGGTATTATTGC	TTGTATGAAAATGCCTTTTTACCTT|TTGCTATGGGTATTATTGCTATGTC
NC_045512.2_pilon	11484	11489	Deletion	7	+	9660	9507	CCATGTGGGCTCTTATAATCTCTGT|TACTTCTAACTACTCAGGTGTAGTT	GTGGGCTCTTATAATCTCTGTTACT|TCTAACTACTCAGGTGTAGTTACAA
NC_045512.2_pilon	16905	14852	Duplication	7	+	473	8696	AACTTACAAATTAAATGTTGGTGAT|TATTTTGTGCTGACATCACATACAG	ATGTGTGATATCAGACAACTACTAT|TTGTAGTTGAAGTTGTTGATAAGTA
NC_045512.2_pilon	20962	20968	Deletion	7	+	5199	5098	CTGCTTGTCGATTCAGATCTTAATG|ACTTTGTCTCTGATGCAGATTCAAC	TGTCGATTCAGATCTTAATGACTTT|GTCTCTGATGCAGATTCAACTTTGA
NC_045512.2_pilon	21288	20911	Duplication	7	+	799	3921	TGAAGCATTTTTAATTGGATGTAAT|TATCTTGGCAAACCACGCGAACAAA	AGGAGTTGCACCAGGTACAGCTGTT|TTAAGACAGTGGTTGCCTACGGGTA
NC_045512.2_pilon	13002	13022	Deletion	7	+	9528	8120	ATAGAGGTATGGTACTTGGTAGTTT|AGCTGCCACAGTACGTCTACAAGCT	TAGTTTAGCTGCCACAGTACGTCTA|CAAGCTGGTAATGCAACAGAAGTGC
NC_045512.2_pilon	29448	27761	Duplication	7	+	2292	2358	AGAGACAGAAGAAACAGCAAACTGT|GACTCTTCTTCCTGCTGCAGATTTG	ACACTCAAAAGAAAGACAGAATGAT|TGAACTTTCATTAATTGACTTCTAT
NC_045512.2_pilon	29173	27794	Duplication	7	+	9607	2389	CAGACAAGGAACTGATTACAAACAT|TGGCCGCAAATTGCACAATTTGCCC	CATTAATTGACTTCTATTTGTGCTT|TTTAGCCTTTCTGCTATTCCTTGTT
NC_045512.2_pilon	29163	27798	Duplication	7	+	8963	2425	AGGAACTAATCAGACAAGGAACTGA|TTACAAACATTGGCCGCAAATTGCA	AATTGACTTCTATTTGTGCTTTTTA|GCCTTTCTGCTATTCCTTGTTTTAA
NC_045512.2_pilon	29328	29344	Deletion	7	+	3373	3975	CAAATTTCAAAGATCAAGTCATTTT|GCTGAATAAGCATATTGACGCATAC	AAGTCATTTTGCTGAATAAGCATAT|TGACGCATACAAAACATTCCCACCA
NC_045512.2_pilon	6949	29311	Deletion	7	+	7891	13075	ACCTAATTTTTCTAAACTGATAAAT|ATTACAATTTGGTTTTTACTATTAA	AATTGGATGACAAAGATCCAAATTT|CAAAGATCAAGTCATTTTGCTGAAT
NC_045512.2_pilon	21943	21947	Deletion	7	+	3187	3211	TGTTAATAACGCTACTAATGTTGTT|ATTAAAGTCTGTGAATTTCAATTTT	TAATAACGCTACTAATGTTGTTATT|AAAGTCTGTGAATTTCAATTTTGTA
NC_045512.2_pilon	4531	3549	Duplication	7	+	3218	14308	TGTGGTTGATTATGGTGCTAGATTT|TACTTTTACACCAGTAAAACAACTG	TCTGATGATTACATAGCTACTAATG|GACCACTTAAAGTGGGTGGTAGTTG
NC_045512.2_pilon	25519	43	Duplication	7	+	2541	403	ATACCGATACAAGCCTCACTCCCTT|TCGGATGGCTTATTGTTGGCGTTGC	TCCCAGGTAACAAACCAACCAACTT|TCGATCTCTTGTAGATCTGTTCTCT
NC_045512.2_pilon	15976	15980	Deletion	7	+	9202	9308	CTAGGGGCCGGCTGTTTTGTAGATG|ATATCGTAAAAACAGATGGTACACT	GGGGCCGGCTGTTTTGTAGATGATA|TCGTAAAAACAGATGGTACACTTAT
NC_045512.2_pilon	29442	29339	Duplication	7	+	2215	3818	TACCGCAGAGACAGAAGAAACAGCA|AACTGTGACTCTTCTTCCTGCTGCA	AGATCAAGTCATTTTGCTGAATAAG|CATATTGACGCATACAAAACATTCC
NC_045512.2_pilon	23195	23201	Deletion	6	+	696	747	AAATGTGTCAATTTCAACTTCAATG|GTTTAACAGGCACAGGTGTTCTTAC	TGTCAATTTCAACTTCAATGGTTTA|ACAGGCACAGGTGTTCTTACTGAGT
NC_045512.2_pilon	29703	29707	Deletion	6	+	43122	43033	CTTTAATCAGTGTGTAACATTAGGG|AGGACTTGAAAGAGCCACCACATTT	TAATCAGTGTGTAACATTAGGGAGG|ACTTGAAAGAGCCACCACATTTTCA
NC_045512.2_pilon	29570	29592	Deletion	6	+	9368	14271	CACACAAGGCAGATGGGCTATATAA|ACGTTTTCGCTTTTCCGTTTACGAT	ATAAACGTTTTCGCTTTTCCGTTTA|CGATATATAGTCTACTCTTGTGCAG
NC_045512.2_pilon	10455	10490	Deletion	6	+	7990	8425	ACCAATGTGCTATGAGGCCCAATTT|CACTATTAAGGGTTCATTCCTTAAT	GGGTTCATTCCTTAATGGTTCATGT|GGTAGTGTTGGTTTTAACATAGATT
NC_045512.2_pilon	12323	10381	Duplication	6	+	1137	8386	ATGTATAAACAGGCTAGATCTGAGG|ACAAGAGGGCAAAAGTTACTAGTGC	ATAAGTTTGTTCGCATTCAACCAGG|ACAGACTTTTTCAGTGTTAGCTTGT
NC_045512.2_pilon	15323	15338	Deletion	6	+	14480	16050	CTAAATGTGATAGAGCCATGCCTAA|CATGCTTAGAATTATGGCCTCACTT	GCCATGCCTAACATGCTTAGAATTA|TGGCCTCACTTGTTCTTGCTCGCAA
NC_045512.2_pilon	12312	12054	Duplication	6	+	10739	1358	CTATGACCCAAATGTATAAACAGGC|TAGATCTGAGGACAAGAGGGCAAAA	CAGGGTGCTGTAGACATAAACAAGC|TTTGTGAAGAAATGCTGGACAACAG
NC_045512.2_pilon	26787	26815	Deletion	6	+	4317	4881	GCTATCGCAATGGCTTGTCTTGTAG|GCTTGATGTGGCTCAGCTACTTCAT	TTGATGTGGCTCAGCTACTTCATTG|CTTCTTTCAGACTGTTTGCGCGTAC
NC_045512.2_pilon	26158	26162	Deletion	6	+	9848	10113	ACAATCGACGGTTCATCCGGAGTTG|TTAATCCAGTAATGGAACCAATTTA	ATCGACGGTTCATCCGGAGTTGTTA|ATCCAGTAATGGAACCAATTTATGA
NC_045512.2_pilon	16300	16311	Deletion	6	+	5084	5587	TTAAGATGTGGTGCTTGCATACGTA|GACCATTCTTATGTTGTAAATGCTG	GTGCTTGCATACGTAGACCATTCTT|ATGTTGTAAATGCTGTTACGACCAT
NC_045512.2_pilon	28977	29016	Deletion	6	+	3705	7493	TGAACCAGCTTGAGAGCAAAATGTT|TGGTAAAGGCCAACAACAACAAGGC	CAACAACAAGGCCAAACTGTCACTA|AGAAATCTGCTGCTGAGGCTTCTAA
NC_045512.2_pilon	29481	29011	Duplication	6	+	2582	6715	TTCCTGCTGCAGATTTGGATGATTT|CTCCAAACAATTGCAACAATCCATG	GCCAACAACAACAAGGCCAAACTGT|CACTAAGAAATCTGCTGCTGAGGCT
NC_045512.2_pilon	26731	26217	Duplication	6	+	2726	13202	TAGCTTGTTTTGTGCTTGCTGCTGT|TTACAGAATAAATTGGATCACCGGT	CGACGACGACTACTAGCGTGCCTTT|GTAAGCACAAGCTGATGAGTACGAA
NC_045512.2_pilon	26159	26181	Deletion	6	+	10010	10889	CAATCGACGGTTCATCCGGAGTTGT|TAATCCAGTAATGGAACCAATTTAT	TTGTTAATCCAGTAATGGAACCAAT|TTATGATGAACCGACGACGACTACT
NC_045512.2_pilon	23570	23065	Duplication	6	+	2021	4973	TGTGACATACCCATTGGTGCAGGTA|TATGCGCTAGTTATCAGACTCAGAC	AATCATATGGTTTCCAACCCACTTA|TGGTGTTGGTTACCAACCATACAGA
NC_045512.2_pilon	9797	9951	Deletion	6	+	769	4143	GTTTCCTTTAGTACTTTTGAAGAAG|CTGCGCTGTGCACCTTTTTGTTAAA	ATGGATACAACTAGCTACAGAGAAG|CTGCTTGTTGTCATCTCGCAAAGGC
NC_045512.2_pilon	29069	29094	Deletion	6	+	10888	5256	CCTCGGCAAAAACGTACTGCCACTA|AAGCATACAATGTAACACAAGCTTT	AAAGCATACAATGTAACACAAGCTT|TCGGCAGACGTGGTCCAGAACAAAC
NC_045512.2_pilon	17918	16262	Duplication	6	+	7294	6883	CTCACTCTTGTAATGTAAACAGATT|TAATGTTGCTATTACCAGAGCAAAA	GCTGTTGGGGCTTGTGTTCTTTGCA|ATTCACAGACTTCATTAAGATGTGG
NC_045512.2_pilon	5809	5825	Deletion	6	+	2276	2383	TTCTAAAGAAACTTTGTATTGCATA|GACGGTGCTTTACTTACAAAGTCCT	GTATTGCATAGACGGTGCTTTACTT|ACAAAGTCCTCAGAATACAAAGGTC
NC_045512.2_pilon	6858	6044	Duplication	6	+	2763	11674	TTAAAGCATCTATGCCGACTACTAT|AGCAAAGAATACTGTTAAGAGTGTC	ACCATATCCAAACGCAAGCTTCGAT|AATTTTAAGTTTGTATGTGATAATA
NC_045512.2_pilon	24126	24142	Deletion	6	+	1213	1461	GAGACCTCATTTGTGCACAAAAGTT|TAACGGCCTTACTGTTTTGCCACCT	CACAAAAGTTTAACGGCCTTACTGT|TTTGCCACCTTTGCTCACAGATGAA
NC_045512.2_pilon	513	518	Deletion	6	+	3994	3971	ATGCTCGAACTGCACCTCATGGTCA|TGTTATGGTTGAGCTGGTAGCAGAA	TCGAACTGCACCTCATGGTCATGTT|ATGGTTGAGCTGGTAGCAGAACTCG
NC_045512.2_pilon	18019	20364	Deletion	6	+	8286	3308	TTTACAAGTCTTGAAATTCCACGTA|GGAATGTGGCAACTTTACAAGCTGA	TTAGTCATAGTCAGTTAGGTGGTTT|ACATCTACTGATTGGACTAGCTAAA
NC_045512.2_pilon	29762	29671	Duplication	6	+	47690	34094	CCACGCGGAGTACGATCGAGTGTAC|AGTGAACAATGCTAGGGAGAGCTGC	TAGATGTAGTTAACTTTAATCTCAC|ATAGCAATCTTTAATCAGTGTGTAA
NC_045512.2_pilon	22159	22163	Deletion	6	+	13344	13380	ATTTGTGTTTAAGAATATTGATGGT|TATTTTAAAATATATTCTAAGCACA	TGTGTTTAAGAATATTGATGGTTAT|TTTAAAATATATTCTAAGCACACGC
NC_045512.2_pilon	3881	3581	Duplication	6	+	7635	13945	CAAGTTGAACAAAAGATCGCTGAGA|TTCCTAAAGAGGAAGTTAAGCCATT	TAAAGTGGGTGGTAGTTGTGTTTTA|AGCGGACACAATCTTGCTAAACACT
NC_045512.2_pilon	3548	3558	Deletion	6	+	14201	14005	TCTGATGATTACATAGCTACTAATG|GACCACTTAAAGTGGGTGGTAGTTG	TACATAGCTACTAATGGACCACTTA|AAGTGGGTGGTAGTTGTGTTTTAAG
NC_045512.2_pilon	70	27889	Deletion	6	+	1246	320	ATCTCTTGTAGATCTGTTCTCTAAA|CGAACTTTAAAATCTGTGTGGCTGT	CATAATGAAACTTGTCACGCCTAAA|CGAACATGAAATTTCTTGTTTTCTT
NC_045512.2_pilon	27190	27223	Deletion	6	+	10771	12537	ACAATATTGCTTTGCTTGTACAGTA|AGTGACAACAGATGTTTCATCTCGT	ACAGATGTTTCATCTCGTTGACTTT|CAGGTTACTATAGCAGAGATATTAC
NC_045512.2_pilon	16295	16300	Deletion	6	+	4987	5084	CTTCATTAAGATGTGGTGCTTGCAT|ACGTAGACCATTCTTATGTTGTAAA	ATTAAGATGTGGTGCTTGCATACGT|AGACCATTCTTATGTTGTAAATGCT
NC_045512.2_pilon	29757	29765	Deletion	5	+	47511	47382	CGAGGCCACGCGGAGTACGATCGAG|TGTACAGTGAACAATGCTAGGGAGA	ACGCGGAGTACGATCGAGTGTACAG|TGAACAATGCTAGGGAGAGCTGCCT
NC_045512.2_pilon	29735	29762	Deletion	5	+	45155	47690	GAAAGAGCCACCACATTTTCACCGA|GGCCACGCGGAGTACGATCGAGTGT	GCCACGCGGAGTACGATCGAGTGTA|CAGTGAACAATGCTAGGGAGAGCTG
NC_045512.2_pilon	15179	15183	Deletion	5	+	7476	7883	ATCAAAAATTATTGAAATCAATAGC|CGCCACTAGAGGAGCTACTGTAGTA	AAAAATTATTGAAATCAATAGCCGC|CACTAGAGGAGCTACTGTAGTAATT
NC_045512.2_pilon	20253	19508	Duplication	5	+	1293	16022	TAAACCCAGGAGTCAAATGGAAATT|GATTTCTTAGAATTAGCTATGGATG	GCTGTCTGTAGACATCATGCTAATG|AGTACAGATTGTATCTCGATGCTTA
NC_045512.2_pilon	1810	741	Duplication	5	+	7483	5321	TAATTTTAAAGTTACAAAAGGAAAA|GCTAAAAAAGGTGCCTGGAATATTG	ACTGATCCTTATGAAGATTTTCAAG|AAAACTGGAACACTAAACATAGCAG
NC_045512.2_pilon	4856	3474	Duplication	5	+	1776	11069	CTAGGTATAGAATTTCTTAAGAGAG|GTGATAAAAGTGTATATTACACTAG	AATGTTTACCTTAAACATGGAGGAG|GTGTTGCAGGAGCCTTAAATAAGGC
NC_045512.2_pilon	26779	26787	Deletion	5	+	4036	4317	GTGGAATTGCTATCGCAATGGCTTG|TCTTGTAGGCTTGATGTGGCTCAGC	TGCTATCGCAATGGCTTGTCTTGTA|GGCTTGATGTGGCTCAGCTACTTCA
NC_045512.2_pilon	17354	17364	Deletion	5	+	9165	10674	AGACGACAGCAGATATAGTTGTCTT|TGATGAAATTTCAATGGCCACAAAT	CAGATATAGTTGTCTTTGATGAAAT|TTCAATGGCCACAAATTATGATTTG
NC_045512.2_pilon	6043	6058	Deletion	5	+	11565	11573	ACCATATCCAAACGCAAGCTTCGAT|AATTTTAAGTTTGTATGTGATAATA	CAAGCTTCGATAATTTTAAGTTTGT|ATGTGATAATATCAAATTTGCTGAT
NC_045512.2_pilon	22862	21962	Duplication	5	+	3151	3927	CCAGATGATTTTACAGGCTGCGTTA|TAGCTTGGAATTCTAACAATCTTGA	TGTTGTTATTAAAGTCTGTGAATTT|CAATTTTGTAATGATCCATTTTTGG
NC_045512.2_pilon	24011	22889	Duplication	5	+	1170	5142	CCATCAAAACCAAGCAAGAGGTCAT|TTATTGAAGATCTACTTTTCAACAA	AGCTTGGAATTCTAACAATCTTGAT|TCTAAGGTTGGTGGTAATTATAATT
NC_045512.2_pilon	22846	22874	Deletion	5	+	2687	3783	TTATAATTATAAATTACCAGATGAT|TTTACAGGCTGCGTTATAGCTTGGA	TACAGGCTGCGTTATAGCTTGGAAT|TCTAACAATCTTGATTCTAAGGTTG
NC_045512.2_pilon	8766	8779	Deletion	5	+	10119	7514	GTTTTGCTAACAAACATGCTGATTT|TGACACATGGTTTAGCCAGCGTGGT	AACATGCTGATTTTGACACATGGTT|TAGCCAGCGTGGTGGTAGTTATACT
NC_045512.2_pilon	8295	29271	Deletion	5	+	8167	11298	GTTGTAATAACTATATGCTCACCTA|TAACAAAGTTGAAAACATGACACCC	ACACCTTCGGGAACGTGGTTGACCT|ACACAGGTGCCATCAAATTGGATGA
NC_045512.2_pilon	27053	27064	Deletion	5	+	5291	5718	TGTTGCTACATCACGAACGCTTTCT|TATTACAAATTGGGAGCTTCGCAGC	TCACGAACGCTTTCTTATTACAAAT|TGGGAGCTTCGCAGCGTGTAGCAGG
NC_045512.2_pilon	516	523	Deletion	5	+	4000	3996	CTCGAACTGCACCTCATGGTCATGT|TATGGTTGAGCTGGTAGCAGAACTC	CTGCACCTCATGGTCATGTTATGGT|TGAGCTGGTAGCAGAACTCGAAGGC
NC_045512.2_pilon	23449	23457	Deletion	5	+	7837	8127	TGTTGCTATTCATGCAGATCAACTT|ACTCCTACTTGGCGTGTTTATTCTA	ATTCATGCAGATCAACTTACTCCTA|CTTGGCGTGTTTATTCTACAGGTTC
NC_045512.2_pilon	22157	22161	Deletion	5	+	13318	13377	GAATTTGTGTTTAAGAATATTGATG|GTTATTTTAAAATATATTCTAAGCA	TTTGTGTTTAAGAATATTGATGGTT|ATTTTAAAATATATTCTAAGCACAC
NC_045512.2_pilon	20407	20423	Deletion	5	+	5308	5628	GCTAAACGTTTTAAGGAATCACCTT|TTGAATTAGAAGATTTTATTCCTAT	GAATCACCTTTTGAATTAGAAGATT|TTATTCCTATGGACAGTACAGTTAA
NC_045512.2_pilon	29683	29696	Deletion	5	+	35531	39990	CTTTAATCTCACATAGCAATCTTTA|ATCAGTGTGTAACATTAGGGAGGAC	ATAGCAATCTTTAATCAGTGTGTAA|CATTAGGGAGGACTTGAAAGAGCCA
NC_045512.2_pilon	24017	24029	Deletion	4	+	1126	243	AAACCAAGCAAGAGGTCATTTATTG|AAGATCTACTTTTCAACAAAGTGAC	GAGGTCATTTATTGAAGATCTACTT|TTCAACAAAGTGACACTTGCAGATG
NC_045512.2_pilon	14499	14518	Deletion	4	+	2000	2623	ATACCACTTCAGAGAGCTAGGTGTT|GTACATAATCAGGATGTAAACTTAC	AGGTGTTGTACATAATCAGGATGTA|AACTTACATAGCTCTAGACTTAGTT
NC_045512.2_pilon	19346	19354	Deletion	4	+	4172	4832	CACCAGCTTTTGATAAAAGTGCTTT|TGTTAATTTAAAACAATTACCATTT	TTTTGATAAAAGTGCTTTTGTTAAT|TTAAAACAATTACCATTTTTCTATT
NC_045512.2_pilon	19292	19296	Deletion	4	+	1500	1596	ACTTGCCTGGTTGTGATGGTGGCAG|TTTGTATGTAAATAAACATGCATTC	TGCCTGGTTGTGATGGTGGCAGTTT|GTATGTAAATAAACATGCATTCCAC
NC_045512.2_pilon	29620	27460	Duplication	4	+	15757	1560	ATATAGTCTACTCTTGTGCAGAATG|AATTCTCGTAACTACATAGCACAAG	TTGTGAGCTTTATCACTACCAAGAG|TGTGTTAGAGGTACAACAGTACTTT
NC_045512.2_pilon	13928	14091	Deletion	4	+	1365	3482	ATTATTTCAATAAAAAGGACTGGTA|TGATTTTGTAGAAAACCCAGATATA	ATCAAGATCTCAATGGTAACTGGTA|TGATTTCGGTGATTTCATACAAACC
NC_045512.2_pilon	517	521	Deletion	4	+	3978	3977	TCGAACTGCACCTCATGGTCATGTT|ATGGTTGAGCTGGTAGCAGAACTCG	AACTGCACCTCATGGTCATGTTATG|GTTGAGCTGGTAGCAGAACTCGAAG
NC_045512.2_pilon	26785	26822	Deletion	4	+	4305	5063	TTGCTATCGCAATGGCTTGTCTTGT|AGGCTTGATGTGGCTCAGCTACTTC	GGCTCAGCTACTTCATTGCTTCTTT|CAGACTGTTTGCGCGTACGCGTTCC
NC_045512.2_pilon	26282	26287	Deletion	4	+	11525	11513	TTTCGGAAGAGACAGGTACGTTAAT|AGTTAATAGCGTACTTCTTTTTCTT	GGAAGAGACAGGTACGTTAATAGTT|AATAGCGTACTTCTTTTTCTTGCTT
NC_045512.2_pilon	24142	23756	Duplication	4	+	1461	18399	ACAAAAGTTTAACGGCCTTACTGTT|TTGCCACCTTTGCTCACAGATGAAA	CACAGAAATTCTACCAGTGTCTATG|ACCAAGACATCAGTAGATTGTACAA
NC_045512.2_pilon	28323	29016	Deletion	4	+	1390	7493	AGCGAAATGCACCCCGCATTACGTT|TGGTGGACCCTCAGATTCAACTGGC	CAACAACAAGGCCAAACTGTCACTA|AGAAATCTGCTGCTGAGGCTTCTAA
NC_045512.2_pilon	17356	17365	Deletion	4	+	9467	11254	ACGACAGCAGATATAGTTGTCTTTG|ATGAAATTTCAATGGCCACAAATTA	AGATATAGTTGTCTTTGATGAAATT|TCAATGGCCACAAATTATGATTTGA
NC_045512.2_pilon	29611	22422	Duplication	4	+	14550	742	GTTTACGATATATAGTCTACTCTTG|TGCAGAATGAATTCTCGTAACTACA	TATAATGAAAATGGAACCATTACAG|ATGCTGTAGACTGTGCACTTGACCC
NC_045512.2_pilon	22930	22964	Deletion	4	+	7000	7956	TTATAATTACCTGTATAGATTGTTT|AGGAAGTCTAATCTCAAACCTTTTG	TAATCTCAAACCTTTTGAGAGAGAT|ATTTCAACTGAAATCTATCAGGCCG
NC_045512.2_pilon	27132	27140	Deletion	4	+	7038	7442	TACAGTCGCTACAGGATTGGCAACT|ATAAATTAAACACAGACCATTCCAG	GCTACAGGATTGGCAACTATAAATT|AAACACAGACCATTCCAGTAGCAGT
NC_045512.2_pilon	29075	29083	Deletion	4	+	11153	4967	CAAAAACGTACTGCCACTAAAGCAT|ACAATGTAACACAAGCTTTCGGCAG	GTACTGCCACTAAAGCATACAATGT|AACACAAGCTTTCGGCAGACGTGGT
NC_045512.2_pilon	4990	5545	Deletion	4	+	4262	10798	TATTAAGGTGTTTACAACAGTAGAC|AACATTAACCTCCACACGCAAGTTG	GTAAAACTTGTGGACAACAGCAGAC|AACCCTTAAGGGTGTAGAAGCTGTT
NC_045512.2_pilon	10935	10947	Deletion	4	+	5165	6016	TATTAGAAGATGAATTTACACCTTT|TGATGTTGTTAGACAATGCTCAGGT	GAATTTACACCTTTTGATGTTGTTA|GACAATGCTCAGGTGTTACTTTCCA
NC_045512.2_pilon	11369	11373	Deletion	4	+	5633	5825	CTTATGACAGCAAGAACTGTGTATG|ATGATGGTGCTAGGAGAGTGTGGAC	ATGACAGCAAGAACTGTGTATGATG|ATGGTGCTAGGAGAGTGTGGACACT
NC_045512.2_pilon	5910	5914	Deletion	4	+	7978	8460	CAACAACCATAAAACCAGTTACTTA|TAAATTGGATGGTGTTGTTTGTACA	CAACCATAAAACCAGTTACTTATAA|ATTGGATGGTGTTGTTTGTACAGAA
NC_045512.2_pilon	10158	10164	Deletion	4	+	2088	2182	TTAACGGTCTTTGGCTTGATGACGT|AGTTTACTGTCCAAGACATGTGATC	GGTCTTTGGCTTGATGACGTAGTTT|ACTGTCCAAGACATGTGATCTGCAC
NC_045512.2_pilon	5534	12074	Deletion	4	+	10479	1606	AACGTGGTGTGTAAAACTTGTGGAC|AACAGCAGACAACCCTTAAGGGTGT	CAAGCTTTGTGAAGAAATGCTGGAC|AACAGGGCAACCTTACAAGCTATAG
NC_045512.2_pilon	24015	24030	Deletion	4	+	1132	257	CAAAACCAAGCAAGAGGTCATTTAT|TGAAGATCTACTTTTCAACAAAGTG	AGGTCATTTATTGAAGATCTACTTT|TCAACAAAGTGACACTTGCAGATGC
NC_045512.2_pilon	672	695	Deletion	4	+	3745	4299	ATAAAGGAGCTGGTGGCCATAGTTA|CGGCGCCGATCTAAAGTCATTTGAC	TTACGGCGCCGATCTAAAGTCATTT|GACTTAGGCGACGAGCTTGGCACTG
NC_045512.2_pilon	13497	13534	Deletion	4	+	4884	3728	TTGCGGTGTAAGTGCAGCCCGTCTT|ACACCGTGCGGCACAGGCACTAGTA	CACAGGCACTAGTACTGATGTCGTA|TACAGGGCTTTTGACATCTACAATG
NC_045512.2_pilon	8768	8777	Deletion	4	+	10121	7198	TTTGCTAACAAACATGCTGATTTTG|ACACATGGTTTAGCCAGCGTGGTGG	CAAACATGCTGATTTTGACACATGG|TTTAGCCAGCGTGGTGGTAGTTATA
NC_045512.2_pilon	28089	28096	Deletion	4	+	2833	2850	ATTGAATTGTTCGTGGATGAGGCTG|GTTCTTAATCACCCATTCAGTGCAT	TTGTTCGTGGATGAGGCTGGTTCTT|AATCACCCATTCAGTGCATCGATAT
NC_045512.2_pilon	18432	18479	Deletion	4	+	4177	6296	TTATGTTGATACACCTAATAATACA|GATTTTTCCAGAGTTAGTGCTAAAC	AAACCACCGCCTGGAGATCAATTTA|AACACCTCATACCACTTATGTACAA
NC_045512.2_pilon	5819	5826	Deletion	4	+	2336	2385	ACTTTGTATTGCATAGACGGTGCTT|TACTTACAAAGTCCTCAGAATACAA	TATTGCATAGACGGTGCTTTACTTA|CAAAGTCCTCAGAATACAAAGGTCC
NC_045512.2_pilon	26767	12	Duplication	4	+	3263	4	ATTGGATCACCGGTGGAATTGCTAT|CGCAATGGCTTGTCTTGTAGGCTTG	|ATACCTTCCCAGGTAACAAACCAAC
NC_045512.2_pilon	6603	14045	Deletion	4	+	293	2557	TTACTATTAAGAAACCTAATGAATT|ATCTAGAGTATTAGGTTTGAAAACC	GATGCCATGCGAAATGCTGGTATTG|TTGGTGTACTGACATTAGATAATCA
NC_045512.2_pilon	4493	4590	Deletion	4	+	7712	5037	ATACAGCGTAAATATAAGGGTATTA|AAATACAAGAGGGTGTGGTTGATTA	CTTATCAACACACTTAACGATCTAA|ATGAAACTCTTGTTACAATGCCACT
NC_045512.2_pilon	29164	27795	Duplication	4	+	9181	2418	GGAACTAATCAGACAAGGAACTGAT|TACAAACATTGGCCGCAAATTGCAC	ATTAATTGACTTCTATTTGTGCTTT|TTAGCCTTTCTGCTATTCCTTGTTT
NC_045512.2_pilon	28584	27820	Duplication	4	+	6148	2352	GTGGTGACGGTAAAATGAAAGATCT|CAGTCCAAGATGGTATTTCTACTAC	TTAGCCTTTCTGCTATTCCTTGTTT|TAATTATGCTTATTATCTTTTGGTT
NC_045512.2_pilon	27554	27640	Deletion	4	+	1497	1742	TTCATCCTCTAGCTGATAACAAATT|TGCACTGACTTGCTTTAGCACTCAA	CTATCAGTTACGTGCCAGATCAGTT|TCACCTAAACTGTTCATCAGACAAG
NC_045512.2_pilon	27268	27289	Deletion	4	+	15757	15912	TTACTAATTATTATGAGGACTTTTA|AAGTTTCCATTTGGAATCTTGATTA	TTTTAAAGTTTCCATTTGGAATCTT|GATTACATCATAAACCTCATAATTA
NC_045512.2_pilon	26775	26833	Deletion	3	+	3589	5219	ACCGGTGGAATTGCTATCGCAATGG|CTTGTCTTGTAGGCTTGATGTGGCT	TTCATTGCTTCTTTCAGACTGTTTG|CGCGTACGCGTTCCATGTGGTCATT
NC_045512.2_pilon	9492	11520	Deletion	3	+	4274	1594	GAAGAGCTTTTGGTGAATACAGTCA|TGTAGTTGCCTTTAATACTTTACTA	TACTCAGGTGTAGTTACAACTGTCA|TGTTTTTGGCCAGAGGTATTGTTTT
NC_045512.2_pilon	23541	23571	Deletion	3	+	11641	2020	GGGCTGAACATGTCAACAACTCATA|TGAGTGTGACATACCCATTGGTGCA	TGTGACATACCCATTGGTGCAGGTA|TATGCGCTAGTTATCAGACTCAGAC
NC_045512.2_pilon	18968	18989	Deletion	3	+	6937	7457	AACTGAAGATTAATGCGGCTTGTAG|AAAGGTTCAACACATGGTTGTTAAA	TGTAGAAAGGTTCAACACATGGTTG|TTAAAGCTGCATTATTAGCAGACAA
NC_045512.2_pilon	8210	28793	Deletion	3	+	17869	3577	TTTGTTGATTCAGATGTAGAAACTA|AAGATGTTGTTGAATGTCTTAAATT	AACATTGCCAAAAGGCTTCTACGCA|GAAGGGAGCAGAGGCGGCAGTCAAG
NC_045512.2_pilon	3670	3679	Deletion	3	+	6202	6538	CATTCAACTTCTTAAGAGTGCTTAT|GAAAATTTTAATCAGCACGAAGTTC	TTCTTAAGAGTGCTTATGAAAATTT|TAATCAGCACGAAGTTCTACTTGCA
NC_045512.2_pilon	28093	26819	Duplication	3	+	2870	4949	AATTGTTCGTGGATGAGGCTGGTTC|TTAATCACCCATTCAGTGCATCGAT	TGTGGCTCAGCTACTTCATTGCTTC|TTTCAGACTGTTTGCGCGTACGCGT
NC_045512.2_pilon	4533	4549	Deletion	3	+	3209	3412	TGGTTGATTATGGTGCTAGATTTTA|CTTTTACACCAGTAAAACAACTGTA	CTAGATTTTACTTTTACACCAGTAA|AACAACTGTAGCGTCACTTATCAAC
NC_045512.2_pilon	14905	14912	Deletion	3	+	8665	8686	GATTGTTACGATGGTGGCTGTATTA|ATGCTAACCAAGTCATCGTCAACAA	TACGATGGTGGCTGTATTAATGCTA|ACCAAGTCATCGTCAACAACCTAGA
NC_045512.2_pilon	21607	21612	Deletion	3	+	15219	14989	ATTGCCACTAGTCTCTAGTCAGTGT|GTTAATCTTACAACCAGAACTCAAT	CCACTAGTCTCTAGTCAGTGTGTTA|ATCTTACAACCAGAACTCAATTACC
NC_045512.2_pilon	26161	26170	Deletion	3	+	10018	10418	ATCGACGGTTCATCCGGAGTTGTTA|ATCCAGTAATGGAACCAATTTATGA	TTCATCCGGAGTTGTTAATCCAGTA|ATGGAACCAATTTATGATGAACCGA
NC_045512.2_pilon	28977	28409	Duplication	3	+	3705	802	TGAACCAGCTTGAGAGCAAAATGTT|TGGTAAAGGCCAACAACAACAAGGC	AAAACAACGTCGGCCCCAAGGTTTA|CCCAATAATACTGCGTCTTGGTTCA
NC_045512.2_pilon	9858	9862	Deletion	3	+	1938	2028	ATCTAAAGTTGCGTAGTGATGTGCT|ATTACCTCTTACGCAATATAATAGA	TAAAGTTGCGTAGTGATGTGCTATT|ACCTCTTACGCAATATAATAGATAC
NC_045512.2_pilon	3046	3051	Deletion	3	+	11002	11165	TATGTATTGTTCTTTTTACCCTCCA|GATGAGGATGAAGAAGAAGGTGATT	TATTGTTCTTTTTACCCTCCAGATG|AGGATGAAGAAGAAGGTGATTGTGA
NC_045512.2_pilon	14854	14858	Deletion	3	+	8680	8712	TGTGATATCAGACAACTACTATTTG|TAGTTGAAGTTGTTGATAAGTACTT	GATATCAGACAACTACTATTTGTAG|TTGAAGTTGTTGATAAGTACTTTGA
NC_045512.2_pilon	28405	21705	Duplication	3	+	1239	530	ATCAAAACAACGTCGGCCCCAAGGT|TTACCCAATAATACTGCGTCTTGGT	GACAAAGTTTTCAGATCCTCAGTTT|TACATTCAACTCAGGACTTGTTCTT
NC_045512.2_pilon	27553	27222	Duplication	3	+	1499	12411	TTTCATCCTCTAGCTGATAACAAAT|TTGCACTGACTTGCTTTAGCACTCA	AACAGATGTTTCATCTCGTTGACTT|TCAGGTTACTATAGCAGAGATATTA
NC_045512.2_pilon	27682	27294	Duplication	3	+	1736	15501	AGACAAGAGGAAGTTCAAGAACTTT|ACTCTCCAATTTTTCTTATTGTTGC	AAGTTTCCATTTGGAATCTTGATTA|CATCATAAACCTCATAATTAAAAAT
NC_045512.2_pilon	21639	11163	Duplication	3	+	785	6543	TTACAACCAGAACTCAATTACCCCC|TGCATACACTAATTCTTTCACACGT	GCAATGATGTTTGTCAAACATAAGC|ATGCATTTCTCTGTTTGTTTTTGTT
NC_045512.2_pilon	22287	22293	Deletion	3	+	2803	2916	ACATCACTAGGTTTCAAACTTTACT|TGCTTTACATAGAAGTTATTTGACT	ACTAGGTTTCAAACTTTACTTGCTT|TACATAGAAGTTATTTGACTCCTGG
NC_045512.2_pilon	18740	18744	Deletion	3	+	4922	4934	GTTGGCATCATTCTATTGGATTTGA|TTACGTCTATAATCCGTTTATGATT	GGCATCATTCTATTGGATTTGATTA|CGTCTATAATCCGTTTATGATTGAT
NC_045512.2_pilon	24137	24143	Deletion	3	+	1372	1525	TGTGCACAAAAGTTTAACGGCCTTA|CTGTTTTGCCACCTTTGCTCACAGA	ACAAAAGTTTAACGGCCTTACTGTT|TTGCCACCTTTGCTCACAGATGAAA
NC_045512.2_pilon	10513	10532	Deletion	3	+	1650	1934	TGGTAGTGTTGGTTTTAACATAGAT|TATGACTGTGTCTCTTTTTGTTACA	CATAGATTATGACTGTGTCTCTTTT|TGTTACATGCACCATATGGAATTAC
NC_045512.2_pilon	3340	933	Duplication	3	+	2207	4205	ACCAGTTGTTCAGACTATTGAAGTG|AATAGTTTTAGTGGTTATTTAAAAC	TTGTCTGAACAACTGGACTTTATTG|ACACTAAGAGGGGTGTATACTGCTG
NC_045512.2_pilon	8765	8776	Deletion	3	+	10214	7184	TGTTTTGCTAACAAACATGCTGATT|TTGACACATGGTTTAGCCAGCGTGG	ACAAACATGCTGATTTTGACACATG|GTTTAGCCAGCGTGGTGGTAGTTAT
NC_045512.2_pilon	8764	8779	Deletion	3	+	10224	7514	TTGTTTTGCTAACAAACATGCTGAT|TTTGACACATGGTTTAGCCAGCGTG	AACATGCTGATTTTGACACATGGTT|TAGCCAGCGTGGTGGTAGTTATACT
NC_045512.2_pilon	24874	5897	Duplication	3	+	4353	6474	TTCAAATGGCACACACTGGTTTGTA|ACACAAAGGAATTTTTATGAACCAC	AGAAAACAGTTACACAACAACCATA|AAACCAGTTACTTATAAATTGGATG
NC_045512.2_pilon	25732	25736	Deletion	3	+	3406	3364	CTCTATCTTTATGCTTTAGTCTACT|TCTTGCAGAGTATAAACTTTGTAAG	TATCTTTATGCTTTAGTCTACTTCT|TGCAGAGTATAAACTTTGTAAGAAT
NC_045512.2_pilon	4529	4538	Deletion	3	+	3094	3270	GGTGTGGTTGATTATGGTGCTAGAT|TTTACTTTTACACCAGTAAAACAAC	TGATTATGGTGCTAGATTTTACTTT|TACACCAGTAAAACAACTGTAGCGT
NC_045512.2_pilon	4539	4549	Deletion	3	+	3282	3412	ATTATGGTGCTAGATTTTACTTTTA|CACCAGTAAAACAACTGTAGCGTCA	CTAGATTTTACTTTTACACCAGTAA|AACAACTGTAGCGTCACTTATCAAC
NC_045512.2_pilon	4580	4590	Deletion	3	+	4476	5037	GTAGCGTCACTTATCAACACACTTA|ACGATCTAAATGAAACTCTTGTTAC	CTTATCAACACACTTAACGATCTAA|ATGAAACTCTTGTTACAATGCCACT
NC_045512.2_pilon	4530	4589	Deletion	3	+	3173	5031	GTGTGGTTGATTATGGTGCTAGATT|TTACTTTTACACCAGTAAAACAACT	ACTTATCAACACACTTAACGATCTA|AATGAAACTCTTGTTACAATGCCAC
NC_045512.2_pilon	4530	4581	Deletion	3	+	3173	4515	GTGTGGTTGATTATGGTGCTAGATT|TTACTTTTACACCAGTAAAACAACT	GTAGCGTCACTTATCAACACACTTA|ACGATCTAAATGAAACTCTTGTTAC
NC_045512.2_pilon	4537	4548	Deletion	3	+	3273	3409	TGATTATGGTGCTAGATTTTACTTT|TACACCAGTAAAACAACTGTAGCGT	GCTAGATTTTACTTTTACACCAGTA|AAACAACTGTAGCGTCACTTATCAA
NC_045512.2_pilon	29496	29500	Deletion	3	+	3150	3364	TGGATGATTTCTCCAAACAATTGCA|ACAATCCATGAGCAGTGCTGACTCA	ATGATTTCTCCAAACAATTGCAACA|ATCCATGAGCAGTGCTGACTCAACT
NC_045512.2_pilon	3814	3588	Duplication	3	+	7404	13927	AGCTGTCTTTGATAAAAATCTCTAT|GACAAACTTGTTTCAAGCTTTTTGG	GGTGGTAGTTGTGTTTTAAGCGGAC|ACAATCTTGCTAAACACTGTCTTCA
NC_045512.2_pilon	20279	20302	Deletion	3	+	1377	1882	ATTTCTTAGAATTAGCTATGGATGA|ATTCATTGAACGGTATAAATTAGAA	TGAATTCATTGAACGGTATAAATTA|GAAGGCTATGCCTTCGAACATATCG
NC_045512.2_pilon	22683	22692	Deletion	2	+	6825	7181	CTGTCCTATATAATTCCGCATCATT|TTCCACTTTTAAGTGTTATGGAGTG	TATAATTCCGCATCATTTTCCACTT|TTAAGTGTTATGGAGTGTCTCCTAC
NC_045512.2_pilon	29749	29753	Deletion	2	+	47058	46973	ATTTTCACCGAGGCCACGCGGAGTA|CGATCGAGTGTACAGTGAACAATGC	TTCACCGAGGCCACGCGGAGTACGA|TCGAGTGTACAGTGAACAATGCTAG
NC_045512.2_pilon	6045	4344	Duplication	2	+	11644	10307	CATATCCAAACGCAAGCTTCGATAA|TTTTAAGTTTGTATGTGATAATATC	GCCTTTTACATTCTACCATCTATTA|TCTCTAATGAGAAGCAAGAAATTCT
NC_045512.2_pilon	4743	4741	Duplication	2	+	10331	10244	CGTATAATGGTTATCTTACTTCTTC|TTCTAAAACACCTGAAGAACATTTT	CAGCGTATAATGGTTATCTTACTTC|TTCTTCTAAAACACCTGAAGAACAT
NC_045512.2_pilon	3548	2484	Duplication	2	+	14201	3554	TCTGATGATTACATAGCTACTAATG|GACCACTTAAAGTGGGTGGTAGTTG	CCTCTAAAAGCCCCAAAAGAAATTA|TCTTCTTAGAGGGAGAAACACTTCC
NC_045512.2_pilon	19352	19357	Deletion	2	+	4796	4871	CTTTTGATAAAAGTGCTTTTGTTAA|TTTAAAACAATTACCATTTTTCTAT	TGATAAAAGTGCTTTTGTTAATTTA|AAACAATTACCATTTTTCTATTACT
NC_045512.2_pilon	16115	16145	Deletion	2	+	5522	6450	ACTTACAATACATAAGAAAGCTACA|TGATGAGTTAACAGGACACATGTTA	GAGTTAACAGGACACATGTTAGACA|TGTATTCTGTTATGCTTACTAATGA
NC_045512.2_pilon	6962	6966	Deletion	2	+	7744	7744	AAACTGATAAATATTACAATTTGGT|TTTTACTATTAAGTGTTTGCCTAGG	CTGATAAATATTACAATTTGGTTTT|TACTATTAAGTGTTTGCCTAGGTTC
NC_045512.2_pilon	12306	12048	Duplication	2	+	10689	1296	ATCAAGCTATGACCCAAATGTATAA|ACAGGCTAGATCTGAGGACAAGAGG	TCCATGCAGGGTGCTGTAGACATAA|ACAAGCTTTGTGAAGAAATGCTGGA
NC_045512.2_pilon	26157	26162	Deletion	2	+	9861	10113	CACAATCGACGGTTCATCCGGAGTT|GTTAATCCAGTAATGGAACCAATTT	ATCGACGGTTCATCCGGAGTTGTTA|ATCCAGTAATGGAACCAATTTATGA
NC_045512.2_pilon	26195	26199	Deletion	2	+	12290	12712	TGGAACCAATTTATGATGAACCGAC|GACGACTACTAGCGTGCCTTTGTAA	AACCAATTTATGATGAACCGACGAC|GACTACTAGCGTGCCTTTGTAAGCA
NC_045512.2_pilon	14853	14860	Deletion	2	+	8686	8866	GTGTGATATCAGACAACTACTATTT|GTAGTTGAAGTTGTTGATAAGTACT	TATCAGACAACTACTATTTGTAGTT|GAAGTTGTTGATAAGTACTTTGATT
NC_045512.2_pilon	29478	29017	Duplication	2	+	2601	7877	TTCTTCCTGCTGCAGATTTGGATGA|TTTCTCCAAACAATTGCAACAATCC	AACAACAAGGCCAAACTGTCACTAA|GAAATCTGCTGCTGAGGCTTCTAAG
NC_045512.2_pilon	13827	13842	Deletion	2	+	572	777	ATACACAATGGCAGACCTCGTCTAT|GCTTTAAGGCATTTTGATGAAGGTA	ACCTCGTCTATGCTTTAAGGCATTT|TGATGAAGGTAATTGTGACACATTA
NC_045512.2_pilon	9423	9428	Deletion	2	+	1487	1573	CATCTATAGTAGCTGGTGGTATTGT|AGCTATCGTAGTAACATGCCTTGCC	TATAGTAGCTGGTGGTATTGTAGCT|ATCGTAGTAACATGCCTTGCCTACT
NC_045512.2_pilon	3192	3196	Deletion	2	+	10391	10296	CTCTTCAACCTGAAGAAGAGCAAGA|AGAAGATTGGTTAGATGATGATAGT	TTCAACCTGAAGAAGAGCAAGAAGA|AGATTGGTTAGATGATGATAGTCAA
NC_045512.2_pilon	3208	3212	Deletion	2	+	12424	10684	AGAGCAAGAAGAAGATTGGTTAGAT|GATGATAGTCAACAAACTGTTGGTC	GCAAGAAGAAGATTGGTTAGATGAT|GATAGTCAACAAACTGTTGGTCAAC
NC_045512.2_pilon	27054	27058	Deletion	2	+	5284	5299	GTTGCTACATCACGAACGCTTTCTT|ATTACAAATTGGGAGCTTCGCAGCG	GCTACATCACGAACGCTTTCTTATT|ACAAATTGGGAGCTTCGCAGCGTGT
NC_045512.2_pilon	28272	27147	Duplication	2	+	2823	8420	GATTTCATCTAAACGAACAAACTAA|ATGTCTCTAAATGGACCCCAAAATC	GATTGGCAACTATAAATTAAACACA|GACCATTCCAGTAGCAGTGACAATA
NC_045512.2_pilon	29423	29246	Duplication	2	+	2029	10056	GCTGATGAAACTCAAGCCTTACCGC|AGAGACAGAAGAAACAGCAAACTGT	AATGTCGCGCATTGGCATGGAAGTC|ACACCTTCGGGAACGTGGTTGACCT
NC_045512.2_pilon	29710	29173	Duplication	2	+	43815	9607	CAGTGTGTAACATTAGGGAGGACTT|GAAAGAGCCACCACATTTTCACCGA	TCAGACAAGGAACTGATTACAAACA|TTGGCCGCAAATTGCACAATTTGCC
NC_045512.2_pilon	29168	29175	Deletion	2	+	9578	9640	CTAATCAGACAAGGAACTGATTACA|AACATTGGCCGCAAATTGCACAATT	AGACAAGGAACTGATTACAAACATT|GGCCGCAAATTGCACAATTTGCCCC
NC_045512.2_pilon	11025	11040	Deletion	2	+	14045	15906	CACACCACTGGTTGTTACTCACAAT|TTTGACTTCACTTTTAGTTTTAGTC	TTACTCACAATTTTGACTTCACTTT|TAGTTTTAGTCCAGAGTACTCAATG
NC_045512.2_pilon	2421	2440	Deletion	2	+	1469	2010	CGCACTCAAAGGGATTGTACAGAAA|GTGTGTTAAATCCAGAGAAGAAACT	ACAGAAAGTGTGTTAAATCCAGAGA|AGAAACTGGCCTACTCATGCCTCTA
NC_045512.2_pilon	11485	11492	Deletion	2	+	9586	9566	CATGTGGGCTCTTATAATCTCTGTT|ACTTCTAACTACTCAGGTGTAGTTA	GGCTCTTATAATCTCTGTTACTTCT|AACTACTCAGGTGTAGTTACAACTG
NC_045512.2_pilon	11269	11282	Deletion	2	+	8929	10015	GATGCGTATTATGACATGGTTGGAT|ATGGTTGATACTAGTTTGAAGCTAA	GACATGGTTGGATATGGTTGATACT|AGTTTGAAGCTAAAAGACTGTGTTA
NC_045512.2_pilon	11283	11297	Deletion	2	+	8667	9882	CATGGTTGGATATGGTTGATACTAG|TTTGAAGCTAAAAGACTGTGTTATG	GTTGGATATGGTTGATACTAGTTTG|AAGCTAAAAGACTGTGTTATGTATG
NC_045512.2_pilon	14849	14856	Deletion	2	+	8505	8715	CAATGTGTGATATCAGACAACTACT|ATTTGTAGTTGAAGTTGTTGATAAG	GTGATATCAGACAACTACTATTTGT|AGTTGAAGTTGTTGATAAGTACTTT
NC_045512.2_pilon	10443	10456	Deletion	2	+	7697	8101	CATCTGGTGTTTACCAATGTGCTAT|GAGGCCCAATTTCACTATTAAGGGT	ACCAATGTGCTATGAGGCCCAATTT|CACTATTAAGGGTTCATTCCTTAAT
NC_045512.2_pilon	11279	11286	Deletion	2	+	9602	9426	ATGACATGGTTGGATATGGTTGATA|CTAGTTTGAAGCTAAAAGACTGTGT	TGGTTGGATATGGTTGATACTAGTT|TGAAGCTAAAAGACTGTGTTATGTA
NC_045512.2_pilon	8602	8613	Deletion	2	+	6041	6345	GCAGTTAATTAAAGTTACACTTGTG|TTCCTTTTTGTTGCTGCTATTTTCT	AAAGTTACACTTGTGTTCCTTTTTG|TTGCTGCTATTTTCTATTTAATAAC
NC_045512.2_pilon	25556	25561	Deletion	2	+	2220	2201	TTGTTGGCGTTGCACTTCTTGCTGT|TTTTCAGAGCGCTTCCAAAATCATA	TGGCGTTGCACTTCTTGCTGTTTTT|CAGAGCGCTTCCAAAATCATAACCC
NC_045512.2_pilon	14176	13004	Duplication	2	+	6668	6753	TATTCATTGTTAATGCCTATATTAA|CCTTGACCAGGGCTTTAACTGCAGA	TAGAGGTATGGTACTTGGTAGTTTA|GCTGCCACAGTACGTCTACAAGCTG
NC_045512.2_pilon	24141	23543	Duplication	2	+	1455	11633	CACAAAAGTTTAACGGCCTTACTGT|TTTGCCACCTTTGCTCACAGATGAA	GGCTGAACATGTCAACAACTCATAT|GAGTGTGACATACCCATTGGTGCAG
NC_045512.2_pilon	29818	27589	Duplication	2	+	39	1583	GGAAGAGCCCTAATGTGTAAAATTA|ATTTTAGTAGTGCTATCCCCATGTG	TTGCTTTAGCACTCAATTTGCTTTT|GCTTGTCCTGACGGCGTAAAACACG
NC_045512.2_pilon	29164	27802	Duplication	2	+	9181	2416	GGAACTAATCAGACAAGGAACTGAT|TACAAACATTGGCCGCAAATTGCAC	GACTTCTATTTGTGCTTTTTAGCCT|TTCTGCTATTCCTTGTTTTAATTAT
NC_045512.2_pilon	11706	11710	Deletion	2	+	1248	1228	TGACTCTTGGTGTTTATGATTACTT|AGTTTCTACACAGGAGTTTAGATAT	CTCTTGGTGTTTATGATTACTTAGT|TTCTACACAGGAGTTTAGATATATG
NC_045512.2_pilon	512	521	Deletion	2	+	4015	3977	GATGCTCGAACTGCACCTCATGGTC|ATGTTATGGTTGAGCTGGTAGCAGA	AACTGCACCTCATGGTCATGTTATG|GTTGAGCTGGTAGCAGAACTCGAAG
NC_045512.2_pilon	21887	21892	Deletion	2	+	1920	2130	ATAAGAGGCTGGATTTTTGGTACTA|CTTTAGATTCGAAGACCCAGTCCCT	GAGGCTGGATTTTTGGTACTACTTT|AGATTCGAAGACCCAGTCCCTACTT
NC_045512.2_pilon	20489	20494	Deletion	2	+	8469	9124	ATGCGCAAACAGGTTCATCTAAGTG|TGTGTGTTCTGTTATTGATTTATTA	GCAAACAGGTTCATCTAAGTGTGTG|TGTTCTGTTATTGATTTATTACTTG
NC_045512.2_pilon	20408	20422	Deletion	2	+	5340	5662	CTAAACGTTTTAAGGAATCACCTTT|TGAATTAGAAGATTTTATTCCTATG	GGAATCACCTTTTGAATTAGAAGAT|TTTATTCCTATGGACAGTACAGTTA
NC_045512.2_pilon	25248	24712	Duplication	2	+	288	1577	TAGCTGGCTTGATTGCCATAGTAAT|GGTGACAATTATGCTTTGCTGTATG	TTTGTGGAAAGGGCTATCATCTTAT|GTCCTTCCCTCAGTCAGCACCTCAT
NC_045512.2_pilon	29735	29760	Deletion	2	+	45155	47858	GAAAGAGCCACCACATTTTCACCGA|GGCCACGCGGAGTACGATCGAGTGT	AGGCCACGCGGAGTACGATCGAGTG|TACAGTGAACAATGCTAGGGAGAGC
NC_045512.2_pilon	4530	4538	Deletion	2	+	3173	3270	GTGTGGTTGATTATGGTGCTAGATT|TTACTTTTACACCAGTAAAACAACT	TGATTATGGTGCTAGATTTTACTTT|TACACCAGTAAAACAACTGTAGCGT
NC_045512.2_pilon	29543	29310	Duplication	2	+	6415	13091	TCAACTCAGGCCTAAACTCATGCAG|ACCACACAAGGCAGATGGGCTATAT	AAATTGGATGACAAAGATCCAAATT|TCAAAGATCAAGTCATTTTGCTGAA
NC_045512.2_pilon	6947	6954	Deletion	2	+	7895	7837	TCACCTAATTTTTCTAAACTGATAA|ATATTACAATTTGGTTTTTACTATT	AATTTTTCTAAACTGATAAATATTA|CAATTTGGTTTTTACTATTAAGTGT
NC_045512.2_pilon	19451	19455	Deletion	1	+	12819	13275	TAGATTATGTACCACTAAAGTCTGC|TACGTGTATAACACGTTGCAATTTA	ATTATGTACCACTAAAGTCTGCTAC|GTGTATAACACGTTGCAATTTAGGT
NC_045512.2_pilon	29694	29728	Deletion	1	+	38785	44274	CATAGCAATCTTTAATCAGTGTGTA|ACATTAGGGAGGACTTGAAAGAGCC	GAGGACTTGAAAGAGCCACCACATT|TTCACCGAGGCCACGCGGAGTACGA
NC_045512.2_pilon	15971	15979	Deletion	1	+	9499	9205	GAATCCTAGGGGCCGGCTGTTTTGT|AGATGATATCGTAAAAACAGATGGT	AGGGGCCGGCTGTTTTGTAGATGAT|ATCGTAAAAACAGATGGTACACTTA
NC_045512.2_pilon	28091	28095	Deletion	1	+	2857	2848	TGAATTGTTCGTGGATGAGGCTGGT|TCTTAATCACCCATTCAGTGCATCG	ATTGTTCGTGGATGAGGCTGGTTCT|TAATCACCCATTCAGTGCATCGATA
NC_045512.2_pilon	15022	15041	Deletion	1	+	2705	3288	AGTTATGAGGATCAAGATGCACTTT|TCGCATATACAAAACGTAATGTCAT	GCACTTTTCGCATATACAAAACGTA|ATGTCATCCCTACTATAACTCAAAT
NC_045512.2_pilon	15129	15133	Deletion	1	+	5486	5700	CACCGTAGCTGGTGTCTCTATCTGT|AGTACTATGACCAATAGACAGTTTC	CGTAGCTGGTGTCTCTATCTGTAGT|ACTATGACCAATAGACAGTTTCATC
NC_045512.2_pilon	23542	22968	Duplication	1	+	11727	8044	GGCTGAACATGTCAACAACTCATAT|GAGTGTGACATACCCATTGGTGCAG	CTCAAACCTTTTGAGAGAGATATTT|CAACTGAAATCTATCAGGCCGGTAG
NC_045512.2_pilon	16709	19486	Deletion	1	+	706	15117	GTATTGCTACTGTACGTGAAGTGCT|GTCTGACAGAGAATTACATCTTTCA	AACACGTTGCAATTTAGGTGGTGCT|GTCTGTAGACATCATGCTAATGAGT
NC_045512.2_pilon	6603	6913	Deletion	1	+	293	8053	TTACTATTAAGAAACCTAATGAATT|ATCTAGAGTATTAGGTTTGAAAACC	AATTTTGTCTAGAGGCTTCATTTAA|TTATTTGAAGTCACCTAATTTTTCT
NC_045512.2_pilon	28240	28251	Deletion	1	+	2892	2929	TTTTAGAGTATCATGACGTTCGTGT|TGTTTTAGATTTCATCTAAACGAAC	TCATGACGTTCGTGTTGTTTTAGAT|TTCATCTAAACGAACAAACTAAATG
NC_045512.2_pilon	12305	12048	Duplication	1	+	10693	1296	GATCAAGCTATGACCCAAATGTATA|AACAGGCTAGATCTGAGGACAAGAG	TCCATGCAGGGTGCTGTAGACATAA|ACAAGCTTTGTGAAGAAATGCTGGA
NC_045512.2_pilon	3708	3712	Deletion	1	+	7249	7472	AGCACGAAGTTCTACTTGCACCATT|ATTATCAGCTGGTATTTTTGGTGCT	ACGAAGTTCTACTTGCACCATTATT|ATCAGCTGGTATTTTTGGTGCTGAC
NC_045512.2_pilon	2208	2212	Deletion	1	+	8779	9168	AGTTTCTTAGAGACGGTTGGGAAAT|TGTTAAATTTATCTCAACCTGTGCT	TTCTTAGAGACGGTTGGGAAATTGT|TAAATTTATCTCAACCTGTGCTTGT
NC_045512.2_pilon	1597	1604	Deletion	1	+	3286	3635	AGGTGTTGTTGGAGAAGGTTCCGAA|GGTCTTAATGACAACCTTCTTGAAA	TGTTGGAGAAGGTTCCGAAGGTCTT|AATGACAACCTTCTTGAAATACTCC
NC_045512.2_pilon	7436	7442	Deletion	1	+	8332	8626	ATGTACATCTTCTTTGCATCATTTT|ATTATGTATGGAAAAGTTATGTGCA	CATCTTCTTTGCATCATTTTATTAT|GTATGGAAAAGTTATGTGCATGTTG
NC_045512.2_pilon	26011	26017	Deletion	1	+	2568	2596	GACTGTGTTGTATTACACAGTTACT|TCACTTCAGACTATTACCAGCTGTA	TGTTGTATTACACAGTTACTTCACT|TCAGACTATTACCAGCTGTACTCAA
NC_045512.2_pilon	29024	29028	Deletion	1	+	9143	9368	GGCCAAACTGTCACTAAGAAATCTG|CTGCTGAGGCTTCTAAGAAGCCTCG	CAAACTGTCACTAAGAAATCTGCTG|CTGAGGCTTCTAAGAAGCCTCGGCA
NC_045512.2_pilon	6175	6181	Deletion	1	+	6300	6427	CTTAAATGGTGATGTGGTGGCTATT|GATTATAAACACTACACACCCTCTT	ATGGTGATGTGGTGGCTATTGATTA|TAAACACTACACACCCTCTTTTAAG
NC_045512.2_pilon	6023	6044	Deletion	1	+	11018	11674	ATTGATCTTGTACCAAACCAACCAT|ATCCAAACGCAAGCTTCGATAATTT	ACCATATCCAAACGCAAGCTTCGAT|AATTTTAAGTTTGTATGTGATAATA
NC_045512.2_pilon	21993	21991	Duplication	1	+	4046	4079	GTAATGATCCATTTTTGGGTGTTTA|CCACAAAAACAACAAAAGTTGGATG	TTTGTAATGATCCATTTTTGGGTGT|TTACCACAAAAACAACAAAAGTTGG
NC_045512.2_pilon	21887	21891	Deletion	1	+	1920	2123	ATAAGAGGCTGGATTTTTGGTACTA|CTTTAGATTCGAAGACCCAGTCCCT	AGAGGCTGGATTTTTGGTACTACTT|TAGATTCGAAGACCCAGTCCCTACT
NC_045512.2_pilon	3080	3078	Duplication	1	+	13020	12859	GAAGAAGAAGGTGATTGTGAAGAAG|AAGAGTTTGAGCCATCAACTCAATA	GATGAAGAAGAAGGTGATTGTGAAG|AAGAAGAGTTTGAGCCATCAACTCA
NC_045512.2_pilon	14901	14905	Deletion	1	+	8744	8665	CTTTGATTGTTACGATGGTGGCTGT|ATTAATGCTAACCAAGTCATCGTCA	TGATTGTTACGATGGTGGCTGTATT|AATGCTAACCAAGTCATCGTCAACA
NC_045512.2_pilon	27265	27292	Deletion	1	+	15523	15413	ATATTACTAATTATTATGAGGACTT|TTAAAGTTTCCATTTGGAATCTTGA	TAAAGTTTCCATTTGGAATCTTGAT|TACATCATAAACCTCATAATTAAAA
NC_045512.2_pilon	27220	27228	Deletion	1	+	12324	13026	CAACAGATGTTTCATCTCGTTGACT|TTCAGGTTACTATAGCAGAGATATT	TGTTTCATCTCGTTGACTTTCAGGT|TACTATAGCAGAGATATTACTAATT
NC_045512.2_pilon	29174	27294	Duplication	1	+	9592	15501	AGACAAGGAACTGATTACAAACATT|GGCCGCAAATTGCACAATTTGCCCC	AAGTTTCCATTTGGAATCTTGATTA|CATCATAAACCTCATAATTAAAAAT
NC_045512.2_pilon	27267	27293	Deletion	1	+	15666	15458	ATTACTAATTATTATGAGGACTTTT|AAAGTTTCCATTTGGAATCTTGATT	AAAGTTTCCATTTGGAATCTTGATT|ACATCATAAACCTCATAATTAAAAA
NC_045512.2_pilon	29216	29220	Deletion	1	+	9799	9749	TTTGCCCCCAGCGCTTCAGCGTTCT|TCGGAATGTCGCGCATTGGCATGGA	GCCCCCAGCGCTTCAGCGTTCTTCG|GAATGTCGCGCATTGGCATGGAAGT
NC_045512.2_pilon	1637	29006	Deletion	1	+	4194	5931	CTTCTTGAAATACTCCAAAAAGAGA|AAGTCAACATCAATATTGTTGGTGA	TAAAGGCCAACAACAACAAGGCCAA|ACTGTCACTAAGAAATCTGCTGCTG
NC_045512.2_pilon	26778	26832	Deletion	1	+	3865	5215	GGTGGAATTGCTATCGCAATGGCTT|GTCTTGTAGGCTTGATGTGGCTCAG	CTTCATTGCTTCTTTCAGACTGTTT|GCGCGTACGCGTTCCATGTGGTCAT
NC_045512.2_pilon	27054	27059	Deletion	1	+	5284	5287	GTTGCTACATCACGAACGCTTTCTT|ATTACAAATTGGGAGCTTCGCAGCG	CTACATCACGAACGCTTTCTTATTA|CAAATTGGGAGCTTCGCAGCGTGTA
NC_045512.2_pilon	13025	13029	Deletion	1	+	8400	8568	TTAGCTGCCACAGTACGTCTACAAG|CTGGTAATGCAACAGAAGTGCCTGC	GCTGCCACAGTACGTCTACAAGCTG|GTAATGCAACAGAAGTGCCTGCCAA
NC_045512.2_pilon	6416	6420	Deletion	1	+	3460	3529	GATCTAAAACCAGTCTCTGAAGAAG|TAGTGGAAAATCCTACCATACAGAA	CTAAAACCAGTCTCTGAAGAAGTAG|TGGAAAATCCTACCATACAGAAAGA
NC_045512.2_pilon	12549	12585	Deletion	1	+	7675	12311	CAACATTTACTTATGCATCAGCATT|GTGGGAAATCCAACAGGTTGTAGAT	CAACAGGTTGTAGATGCAGATAGTA|AAATTGTTCAACTTAGTGAAATTAG
NC_045512.2_pilon	1578	1582	Deletion	1	+	2097	2414	ACATAGGTTGTAACCATACAGGTGT|TGTTGGAGAAGGTTCCGAAGGTCTT	TAGGTTGTAACCATACAGGTGTTGT|TGGAGAAGGTTCCGAAGGTCTTAAT
NC_045512.2_pilon	14731	14736	Deletion	1	+	11046	11038	GCTGTGTCTAAGGGTTTCTTTAAGG|AAGGAAGTTCTGTTGAATTAAAACA	TGTCTAAGGGTTTCTTTAAGGAAGG|AAGTTCTGTTGAATTAAAACACTTC
NC_045512.2_pilon	19660	21215	Deletion	1	+	6400	2035	GCTTTTAATGTTGTAAATAAGGGAC|ACTTTGATGGACAACAGGGTGAAGT	GCTGATCTTTATAAGCTCATGGGAC|ACTTCGCATGGTGGACAGCCTTTGT
NC_045512.2_pilon	27606	22941	Duplication	1	+	1264	6742	TGCTTTTGCTTGTCCTGACGGCGTA|AAACACGTCTATCAGTTACGTGCCA	CTGTATAGATTGTTTAGGAAGTCTA|ATCTCAAACCTTTTGAGAGAGATAT
NC_045512.2_pilon	1144	1148	Deletion	1	+	4003	4312	ACCAAGGGTTGAAAAGAAAAAGCTT|GATGGCTTTATGGGTAGAATTCGAT	AAGGGTTGAAAAGAAAAAGCTTGAT|GGCTTTATGGGTAGAATTCGATCTG
NC_045512.2_pilon	5887	5891	Deletion	1	+	5279	5286	TTTCTACAAAGAAAACAGTTACACA|ACAACCATAAAACCAGTTACTTATA	CTACAAAGAAAACAGTTACACAACA|ACCATAAAACCAGTTACTTATAAAT
NC_045512.2_pilon	5498	5502	Deletion	1	+	8073	8570	CAACATGCCAATTTAGATTCTTGCA|AAAGAGTCTTGAACGTGGTGTGTAA	CATGCCAATTTAGATTCTTGCAAAA|GAGTCTTGAACGTGGTGTGTAAAAC
NC_045512.2_pilon	514	520	Deletion	1	+	4025	3967	TGCTCGAACTGCACCTCATGGTCAT|GTTATGGTTGAGCTGGTAGCAGAAC	GAACTGCACCTCATGGTCATGTTAT|GGTTGAGCTGGTAGCAGAACTCGAA
NC_045512.2_pilon	15637	15644	Deletion	1	+	915	929	CACAGACTTTATGAGTGTCTCTATA|GAAATAGAGATGTTGACACAGACTT	CTTTATGAGTGTCTCTATAGAAATA|GAGATGTTGACACAGACTTTGTGAA
NC_045512.2_pilon	18393	18400	Deletion	1	+	3751	3738	TTTTTCTACAGGTGTTAACCTAGTT|GCTGTACCTACAGGTTATGTTGATA	TACAGGTGTTAACCTAGTTGCTGTA|CCTACAGGTTATGTTGATACACCTA
NC_045512.2_pilon	11278	11282	Deletion	1	+	9590	10015	TATGACATGGTTGGATATGGTTGAT|ACTAGTTTGAAGCTAAAAGACTGTG	GACATGGTTGGATATGGTTGATACT|AGTTTGAAGCTAAAAGACTGTGTTA
NC_045512.2_pilon	24136	24141	Deletion	1	+	1371	1455	TTGTGCACAAAAGTTTAACGGCCTT|ACTGTTTTGCCACCTTTGCTCACAG	GCACAAAAGTTTAACGGCCTTACTG|TTTTGCCACCTTTGCTCACAGATGA
NC_045512.2_pilon	24128	24143	Deletion	1	+	1247	1525	GACCTCATTTGTGCACAAAAGTTTA|ACGGCCTTACTGTTTTGCCACCTTT	ACAAAAGTTTAACGGCCTTACTGTT|TTGCCACCTTTGCTCACAGATGAAA
NC_045512.2_pilon	10098	10102	Deletion	1	+	2094	2111	CATTCCCATCTGGTAAAGTTGAGGG|TTGTATGGTACAAGTAACTTGTGGT	TCCCATCTGGTAAAGTTGAGGGTTG|TATGGTACAAGTAACTTGTGGTACA
NC_045512.2_pilon	445	10662	Deletion	1	+	3988	3737	CTTAGTAGAAGTTGAAAAAGGCGTT|TTGCCTCAACTTGAACAGCCCTATG	GGTACGGACACAACTATTACAGTTA|ATGTTTTAGCTTGGTTGTACGCTGC
NC_045512.2_pilon	3975	3979	Deletion	1	+	11359	11422	ATAAGAAAATCAAAGCTTGTGTTGA|AGAAGTTACAACAACTCTGGAAGAA	AGAAAATCAAAGCTTGTGTTGAAGA|AGTTACAACAACTCTGGAAGAAACT
NC_045512.2_pilon	17700	17770	Deletion	1	+	8585	3418	CACGCATGATGTTTCATCTGCAATT|AACAGGCCACAAATAGGCGTGGTAA	CCCTGCTTGGAGAAAAGCTGTCTTT|ATTTCACCTTATAATTCACAGAATG
NC_045512.2_pilon	7625	7629	Deletion	1	+	6502	6686	AAACTACACAATTGGAATTGTGTTA|ATTGTGATACATTCTGTGCTGGTAG	CTACACAATTGGAATTGTGTTAATT|GTGATACATTCTGTGCTGGTAGTAC
NC_045512.2_pilon	26937	26972	Deletion	1	+	5788	2550	AGACCGCTTCTAGAAAGTGAACTCG|TAATCGGAGCTGTGATCCTTCGTGG	CTGTGATCCTTCGTGGACATCTTCG|TATTGCTGGACACCATCTAGGACGC
NC_045512.2_pilon	26561	25725	Duplication	1	+	742	3446	CGGTACTATTACCGTTGAAGAGCTT|AAAAAGCTCCTTGAACAATGGAACC	CCCCTTTTCTCTATCTTTATGCTTT|AGTCTACTTCTTGCAGAGTATAAAC
NC_045512.2_pilon	10609	10613	Deletion	1	+	2928	2168	AGAAGGTAACTTTTATGGACCTTTT|GTTGACAGGCAAACAGCACAAGCAG	AGGTAACTTTTATGGACCTTTTGTT|GACAGGCAAACAGCACAAGCAGCTG
NC_045512.2_pilon	11275	10771	Duplication	1	+	9450	7084	TATTATGACATGGTTGGATATGGTT|GATACTAGTTTGAAGCTAAAAGACT	ACCTTGTGGCTATGAAGTACAATTA|TGAACCTCTAACACAAGACCATGTT
NC_045512.2_pilon	23433	23469	Deletion	1	+	6421	9447	ACTGCACAGAAGTCCCTGTTGCTAT|TCATGCAGATCAACTTACTCCTACT	CAACTTACTCCTACTTGGCGTGTTT|ATTCTACAGGTTCTAATGTTTTTCA
NC_045512.2_pilon	4449	4468	Deletion	1	+	6968	7305	AATTAATGCCTGTCTGTGTGGAAAC|TAAAGCCATAGTTTCAACTATACAG	TGGAAACTAAAGCCATAGTTTCAAC|TATACAGCGTAAATATAAGGGTATT
NC_045512.2_pilon	27554	27632	Deletion	1	+	1497	1551	TTCATCCTCTAGCTGATAACAAATT|TGCACTGACTTGCTTTAGCACTCAA	AAACACGTCTATCAGTTACGTGCCA|GATCAGTTTCACCTAAACTGTTCAT
NC_045512.2_pilon	27681	27691	Deletion	1	+	1745	1920	CAGACAAGAGGAAGTTCAAGAACTT|TACTCTCCAATTTTTCTTATTGTTG	GGAAGTTCAAGAACTTTACTCTCCA|ATTTTTCTTATTGTTGCGGCAATAG
NC_045512.2_pilon	69	27756	Deletion	1	+	1291	2297	GATCTCTTGTAGATCTGTTCTCTAA|ACGAACTTTAAAATCTGTGTGGCTG	GCTTCACACTCAAAAGAAAGACAGA|ATGATTGAACTTTCATTAATTGACT
NC_045512.2_pilon	28983	27546	Duplication	1	+	3882	1466	AGCTTGAGAGCAAAATGTTTGGTAA|AGGCCAACAACAACAAGGCCAAACT	ATTCACCATTTCATCCTCTAGCTGA|TAACAAATTTGCACTGACTTGCTTT
NC_045512.2_pilon	4965	4349	Duplication	1	+	4725	10318	TTCTTTCTTTGAGAGAAGTGAGGAC|TATTAAGGTGTTTACAACAGTAGAC	TTACATTCTACCATCTATTATCTCT|AATGAGAAGCAAGAAATTCTTGGAA
NC_045512.2_pilon	27265	27301	Deletion	1	+	15523	15298	ATATTACTAATTATTATGAGGACTT|TTAAAGTTTCCATTTGGAATCTTGA	CATTTGGAATCTTGATTACATCATA|AACCTCATAATTAAAAATTTATCTA
NC_045512.2_pilon	3346	3360	Deletion	1	+	2387	2778	TGTTCAGACTATTGAAGTGAATAGT|TTTAGTGGTTATTTAAAACTTACTG	GAAGTGAATAGTTTTAGTGGTTATT|TAAAACTTACTGACAATGTATACAT
NC_045512.2_pilon	4588	3549	Duplication	1	+	4862	14308	ACTTATCAACACACTTAACGATCTA|AATGAAACTCTTGTTACAATGCCAC	TCTGATGATTACATAGCTACTAATG|GACCACTTAAAGTGGGTGGTAGTTG
NC_045512.2_pilon	27222	25396	Duplication	1	+	12411	994	ACAGATGTTTCATCTCGTTGACTTT|CAGGTTACTATAGCAGAGATATTAC	TACATTACACATAAACGAACTTATG|GATTTGTTTATGAGAATCTTCACAA
NC_045512.2_pilon	7109	7113	Deletion	1	+	2994	3178	ACTAATGTCACTATTGCAACCTACT|GTACTGGTTCTATACCTTGTAGTGT	AATGTCACTATTGCAACCTACTGTA|CTGGTTCTATACCTTGTAGTGTTTG
NC_045512.2_pilon	29390	29388	Duplication	1	+	4990	4898	CCAACAGAGCCTAAAAAGGACAAAA|AGAAGAAGGCTGATGAAACTCAAGC	CCACCAACAGAGCCTAAAAAGGACA|AAAAGAAGAAGGCTGATGAAACTCA
NC_045512.2_pilon	29683	28908	Duplication	1	+	35531	1871	CTTTAATCTCACATAGCAATCTTTA|ATCAGTGTGTAACATTAGGGAGGAC	CGAACTTCTCCTGCTAGAATGGCTG|GCAATGGCGGTGATGCTGCTCTTGC
NC_045512.2_pilon	6319	6045	Duplication	1	+	1006	11644	ACGTTGTCTTTGGAGCACAAAACCA|GTTGAAACATCAAATTCGTTTGATG	CCATATCCAAACGCAAGCTTCGATA|ATTTTAAGTTTGTATGTGATAATAT
NC_045512.2_pilon	18126	18160	Deletion	1	+	9107	4124	ACAGGCACCTACACACCTCAGTGTT|GACACTAAATTCAAAACTGAAGGTT	ATTCAAAACTGAAGGTTTATGTGTT|GACATACCTGGCATACCTAAGGACA
NC_045512.2_pilon	26774	26831	Deletion	1	+	3593	5220	CACCGGTGGAATTGCTATCGCAATG|GCTTGTCTTGTAGGCTTGATGTGGC	ACTTCATTGCTTCTTTCAGACTGTT|TGCGCGTACGCGTTCCATGTGGTCA
NC_045512.2_pilon	23523	23584	Deletion	1	+	11401	2522	GTGCAGGCTGTTTAATAGGGGCTGA|ACATGTCAACAACTCATATGAGTGT	TTGGTGCAGGTATATGCGCTAGTTA|TCAGACTCAGACTAATTCTCATCGG
NC_045512.2_pilon	29167	29188	Deletion	1	+	9476	9552	ACTAATCAGACAAGGAACTGATTAC|AAACATTGGCCGCAAATTGCACAAT	ATTACAAACATTGGCCGCAAATTGC|ACAATTTGCCCCCAGCGCTTCAGCG
NC_045512.2_pilon	18358	18373	Deletion	1	+	2916	3225	GAAGCTGTTGGTACCAATTTACCTT|TACAGCTAGGTTTTTCTACAGGTGT	CAATTTACCTTTACAGCTAGGTTTT|TCTACAGGTGTTAACCTAGTTGCTG
NC_045512.2_pilon	29466	29324	Duplication	1	+	2587	3273	AAACTGTGACTCTTCTTCCTGCTGC|AGATTTGGATGATTTCTCCAAACAA	AGATCCAAATTTCAAAGATCAAGTC|ATTTTGCTGAATAAGCATATTGACG
NC_045512.2_pilon	11082	11083	Ins:TT	10	+	16824	3326	CTCAATGGTCTTTGTTCTTTTTTTT|GTATGAAAATGCCTTTTTACCTTTT	CTCAATGGTCTTTGTTCTTTTTTTT|GTATGAAAATGCCTTTTTACCTTTT
NC_045512.2_pilon	20496	20497	Ins:GT	6	+	9424	9574	AACAGGTTCATCTAAGTGTGTGTGT|TCTGTTATTGATTTATTACTTGATG	AACAGGTTCATCTAAGTGTGTGTGT|TCTGTTATTGATTTATTACTTGATG
NC_045512.2_pilon	7823	7824	Ins:TC	3	+	2421	2477	ACTTATGAAAGACATTCTCTCTCTC|ATTTTGTTAACTTAGACAACCTGAG	ACTTATGAAAGACATTCTCTCTCTC|ATTTTGTTAACTTAGACAACCTGAG
NC_045512.2_pilon	29693	29694	Ins:GT	1	+	37304	38785	ACATAGCAATCTTTAATCAGTGTGT|AACATTAGGGAGGACTTGAAAGAGC	ACATAGCAATCTTTAATCAGTGTGT|AACATTAGGGAGGACTTGAAAGAGC
NC_045512.2_pilon	20487	20488	Ins:AG	1	+	7812	8409	AGATGCGCAAACAGGTTCATCTAAG|TGTGTGTGTTCTGTTATTGATTTAT	AGATGCGCAAACAGGTTCATCTAAG|TGTGTGTGTTCTGTTATTGATTTAT
NC_045512.2_pilon	13170	13171	Ins:AC	1	+	4881	4903	GTGTTAAGATGTTGTGTACACACAC|TGGTACTGGTCAGGCAATAACAGTT	GTGTTAAGATGTTGTGTACACACAC|TGGTACTGGTCAGGCAATAACAGTT