SARSMutOnto is an ontology that describes the SARS-CoV2 genome structure by detailing its component genes. It also describes all the variants listed by the researchers while keeping the hierarchical relationship (variant / sub-variant) between the variants
One of the two original haplotypes of the pandemic (A and B). Many sequences originating from China and many global exports; including to South East Asia Japan South Korea Australia the USA and Europe represented in this lineage
Mostly Spanish lineage now includes South and Central American sequences, other European countries and Kazakhstan.
Costa Rica lineage from pango-designation issue #33
Predominantly Ecuador lineage, from pango-designation issue #168
A lineage with a lot of representation from Spanish-speaking countries. A Spanish/ South-American lineage, but now with sequences from an outbreak in Scotland. Also now includes what was previously A.10.
International lineage with a number of variants of potential biological concern, including 681R
Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background. pango-designation issue #11.
This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop). pango-designation issue #12
Lineage circulating in multiple countries from pango-designation issue #78
Lineage in several countries, associated with travel from Tanzania, from pango-designation issue #138
One of the two original haplotypes of the pandemic(and first to be discovered)
A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020.
European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`
Alias of B.1.1.1.1.2, mostly South Africa, from pango-designation issue #139
Alias of B.1.1.1.2, South Africa and some European
Alias of B.1.1.1.5, Switzerland and Luxembourg
Alias of B.1.1.1.16, Portugal originally, now pan-european
Alias of B.1.1.1.35, Central Europe, England
Alias of B.1.1.1.36, Egypt mainly and other countries
Alias of B.1.1.1.36.3, Europe and USA lineage, from pango-designation issue #80
Alias of B.1.1.1.36.3.1, Europe and USA lineage, from pango-designation issue #80
Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from pango-designation issue #52
Alias of B.1.1.1.37.1, lineage outside of South America, from pango-designation issue #158
Alias of B.1.1.1.38, lineage in multiple countries, from pango-designation issue #150, formally B.1.1.527
Alias of B.1.1.1.39, Chile and Peru lineage
Alias of B.1.1.1.40, Peru lineage, from pango-designation issue #203
UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html
Alias of B.1.1.7.1, predominantly Lithuania lineage, from pango-designation issue #39
Alias of B.1.1.7.2, Italy lineage, from pango-designation issue #79
Alias of B.1.1.7.3, USA lineage, from pango-designation issue #92
Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from pango-designation issue #176
Alias of B.1.1.7.5, Israel lineage, from pango-designation issue #165
Alias of B.1.1.7.6, France lineage, from pango-designation issue #183
Alias of B.1.1.7.7, predominantly France lineage, from pango-designation issue #183
Alias of B.1.1.7.8, Sri Lanka lineage, from pango-designation issue #197
Alias of B.1.1.10.2, Netherlands lineage
Alias of B.1.1.10.3, Nigerian/ European lineage with long branch from B.1.1.10
Alias of B.1.1.25.4, Irish/ Northern Irish lineage
Alias of B.1.1.25.5, Swedish/ Denmark lineage
Brazil mostly, absorbed B.1.1.94 and B.1.1.143
Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586.
Alias of B.1.1.28.1.1, European lineage in Italy and Germany
Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, pango-designation issue #56
Alias of B.1.1.28.1.3, Brazil lineage, from pango-designation issue #141
Alias of B.1.1.28.1.4, Brazil lineage, from pango-designation issue #141
Alias of B.1.1.28.1.5, Brazil lineage, from pango-designation issue #141
Alias of B.1.1.28.1.6, Brazil lineage, from pango-designation issue #141
Alias of B.1.1.28.1.7, Brazil lineage, from pango-designation issue #141
Alias of B.1.1.28.1.7.1, Peru lineage, from pango-designation issue #326
Alias of B.1.1.28.1.8, Brazil lineage, from pango-designation issue #164
Alias of B.1.1.28.1.9, Brazil lineage, from pango-designation issue #174
Alias of B.1.1.28.1.10, predominantly USA lineage, from pango-designation issue #179
Alias of B.1.1.28.1.10.1, Aruba lineage, from pango-designation issue #179
Alias of B.1.1.28.1.10.2, Mexico lineage, from pango-designation issue #179
Alias of B.1.1.28.1.11, Brazil lineage, from pango-designation issue #164
Alias of B.1.1.28.1.12, predominantly Peru lineage, from pango-designation issue #212
Sublineage of P.1.12 reported predominantly from Peru and US (from pango-designation issue #282)
Alias of B.1.1.28.1.13, USA lineage, from pango-designation issue #231
Alias of B.1.1.28.1.14, predominantly Canada lineage, from pango-designation issue #231
Alias of B.1.1.28.1.15, predominantly Chile lineage, from pango-designation issue #231
Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from pango-designation issue #231
Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from pango-designation issue #231
Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from pango-designation issue #231
Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2
Alias of B.1.1.28.4, Brazil lineage, pango-designation issue #68
Alias of B.1.1.28.5, Brazil lineage, pango-designation issue #86
Alias of B.1.1.28.6, Uruguay lineage, from pango-designation issue #148
Alias of B.1.1.28.7, Brazil lineage, from pango-designation issue #29
Wales lineage, formerly temporarily assigned B.1.1.439 due to an error (see designation issue 50)
Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675
Mostly Switzerland with lots of other countries
South African lineage, a few English sequences, one Zimbabwe
UK lineage, now contains former B.1.1.235
South African some Argentina, now contains B.1.1.252
Used to be just Turkey, now lots of Canadian
Alias of B.1.1.200.1, Sweden and Netherlands, from B.1.1.130
Predominantly Indian lineage with exports elsewhere
Alias of B.1.1.217.1, Latvian lineage, previously I.1
Northern Europe (UK, Denmark, Norway, Sweden)
Northern Europe (UK, Germany, Denmark, Belgium, NL)
England, Ireland, Northern Ireland, Northern Europe
Mostly UK lineage with other northern european plus one singapore
South african lineage, previously part of B.1.1.56
Alias of B.1.1.277.1, South Korean lineage
Alias of B.1.1.297.1, Netherlands lineage
Big indian lineage, exports to Zambia, Bahrain and Canada
Now all England, was US, so probably split from something
Alias of B.1.1.315.2.1, Lithuanian lineage
International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation
Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries. pango-designation issue #17
Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K. pango-designation issue #18
Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del). pango-designation issue #15
Alias of B.1.1.318.1, Canada lineage, from pango-designation issue #171
Alias of B.1.1.318.2, predominantly Greece lineage, from pango-designation issue #171
Alias of B.1.1.318.2.1, Switzerland lineage, from pango-designation issue #171
Alias of B.1.1.318.3, USA lineage, from pango-designation issue #171
Alias of B.1.1.318.4, Ireland lineage, from pango-designation issue #171
Alias of B.1.1.318.5, Mauritius lineage, from pango-designation issue #171
Alias of B.1.1.318.6, Canada lineage, from pango-designation issue #171
Singapore, malaysia, India, UAE, England
Alias of B.1.1.370.1, Russia and Finland lineage from pango-designation issue #47
Saudi Arabia to Romania to Western Europe, contains B.1.1.161 at the base
UK lineage, previously part of B.1.1.279
Russian lineage, some previously B.1.1.184
Predominantly Russia, includes some previous B.1.1.67 and H.1 sequences
Ghana, Burkina Faso, Luxembourg, Germany
UK lineage, includes some formally B.1.1.193 sequences
Russia lineage, contains some formally B.1.1.167 sequences
Mostly US lineage with some UK and Canada (was B.1.1.304)
South African lineage (some were part of Belgian lineage B.1.1.75
Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from pango-designation issue #73
Lineage in multiple countries, predominantly Russia, from pango-designation issue #69
Predominantly Russia lineage, from pango-designation issue #85
India lineage, from pango-designation issue #91, previously designated B.1.624
South Africa lineage, from pango-designation issue #177
South Africa and Botswana lineage, from pango-designation issue #343
Alias of B.1.1.529.1, from pango-designation issue #361
Alias of B.1.1.529.1.1, from pango-designation issue #360
Alias of B.1.1.529.1.1.1, European lineage
Alias of B.1.1.529.1.1.1.1, Japan lineage
Alias of B.1.1.529.1.1.1.2, Peru lineage, from pango-designation issue #570
Alias of B.1.1.529.1.1.3, Switzerland lineage
Alias of B.1.1.529.1.1.5, South Korea lineage
Alias of B.1.1.529.1.1.6, Canada lineage
Alias of B.1.1.529.1.1.7, lineage in India and other countries
Alias of B.1.1.529.1.1.9, New Zealand lineage
Alias of B.1.1.529.1.1.10, Canada lineage
Alias of B.1.1.529.1.1.11, European lineage
Alias of B.1.1.529.1.1.14, European lineage
Alias of B.1.1.529.1.1.15, Europe and Australia lineage
Alias of B.1.1.529.1.1.16, Canada and USA lineage
Alias of B.1.1.529.1.1.17, USA lineage, from pango-designation issue #452
Alias of B.1.1.529.1.2, Mayotte and Reunion lineage
Alias of B.1.1.529.1.6, Canada and Sint Maarten lineage
Alias of B.1.1.529.1.8, European lineage
Alias of B.1.1.529.1.13, European lineage
Alias of B.1.1.529.1.13.1, Indonesia lineage
Alias of B.1.1.529.1.14, lineage in Brazil and other countries
Alias of B.1.1.529.1.14.1, Brazil lineage, from pango-designation issue #506
Alias of B.1.1.529.1.14.2, Brazil lineage
Alias of B.1.1.529.1.15, lineage in USA and other countries
Alias of B.1.1.529.1.15.2, USA lineage, from pango-designation issue #508
Alias of B.1.1.529.1.15.3, Peru lineage, from pango-designation issue #573
Alias of B.1.1.529.1.16.1, Thailand, Cambodia and Indonesia lineage
Alias of B.1.1.529.1.16.2, Greece lineage
Alias of B.1.1.529.1.17, European lineage
Alias of B.1.1.529.1.17.1, Australia lineage
Alias of B.1.1.529.1.17.2, lineage from pango-designation issue #462
Alias of B.1.1.529.1.17.2.1, UK lineage, from pango-designation issue #461
Alias of B.1.1.529.1.18, Europe and North America lineage, from pango-designation issue #474
Alias of B.1.1.529.1.20, USA lineage, from pango-designation issue #375
Alias of B.1.1.529.1.21, lineage from pango-designation issue #505
Alias of B.1.1.529.1.21.1, Italy lineage, from pango-designation issue #409
Alias of B.1.1.529.1.22, Peru lineage from pango-designation issue #529
Alias of B.1.1.529.1.23, mainly found in USA, from pango-designation issue #663
Alias of B.1.1.529.1.24, found in Spain, from pango-designation issue #666
Alias of B.1.1.529.2, from pango-designation issue #361
Alias of B.1.1.529.2.2, Hong Kong lineage
Alias of B.1.1.529.2.2.1, China lineage, from pango-designation issue #675
Alias of B.1.1.529.2.3, lineage in Philippines and other countries
Alias of B.1.1.529.2.3.1, Japan lineage, from pango-designation issue #495
Alias of B.1.1.529.2.3.2, Vietnam and Japan lineage
Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from pango-designation issue #1052
Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from pango-designation issue #1097
Alias of B.1.1.529.2.3.2.1.2, Vietnam lineage, defined by S:T430I
Alias of B.1.1.529.2.3.4, Canada lineage
Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from pango-designation issue #627
Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from pango-designation issue #633
Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from pango-designation issue #643
Alias of B.1.1.529.2.3.8, South Korea lineage
Alias of B.1.1.529.2.3.9, lineage in Netherlands and other countries
Alias of B.1.1.529.2.3.10, Canada and USA lineage
Alias of B.1.1.529.2.3.11, Japan lineage
Alias of B.1.1.529.2.3.12, South Korea lineage
Alias of B.1.1.529.2.3.13, Japan lineage
Alias of B.1.1.529.2.3.14, South Korea lineage
Alias of B.1.1.529.2.3.15, Italy and Spain lineage
Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from pango-designation issue #524
Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from pango-designation issue #1009
Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from pango-designation issue #677
Alias of B.1.1.529.2.3.18, Japan lineage, from pango-designation issue #687
Alias of B.1.1.529.2.3.19, found Brunei, from pango-designation issue #824
Alias of B.1.1.529.2.3.20, found globally, unclear origin, from pango-designation issue #1013
Alias of B.1.1.529.2.3.20.1, S:N17S, from pango-designation issue #1129
Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F
Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, issue #1356
Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D
Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G
Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA
Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from issue #1386
Alias of B.1.1.529.2.3.20.7, Japan/Singapore, S:F486S
Alias of B.1.1.529.2.3.20.8.1, Australia/England, S:F486S
Alias of B.1.1.529.2.3.20.9, USA/Canada/Israel, S:S256L
Alias of B.1.1.529.2.3.20.10, USA/South Korea/Singapore, S:K478T reversion, S:V445A
Alias of B.1.1.529.2.3.20.12, Hong Kong, US, Australia, Japan, ORF8:T12I, from #1481
Alias of B.1.1.529.2.3.21, Philippines, S:P9L and 493 reversion
Alias of B.1.1.529.2.4, Singapore lineage
Alias of B.1.1.529.2.5, lineage in Portugal and other countries
Alias of B.1.1.529.2.6, lineage in France and other countries
Alias of B.1.1.529.2.8, UK lineage, from pango-designation issue #486
Alias of B.1.1.529.2.9, European lineage, from pango-designation issue #432
Alias of B.1.1.529.2.9.1, UK lineage, from pango-designation issue #530
Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from pango-designation issue #630
Alias of B.1.1.529.2.9.4, mainly found in France, from pango-designation issue #635
Alias of B.1.1.529.2.9.5, Thailand lineage
Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from pango-designation issue #671
Alias of B.1.1.529.2.9.7, found mainly in USA, from pango-designation issue #864
Alias of B.1.1.529.2.10, lineage from pango-designation issue #496
Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries
Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from pango-designation issue #915
Alias of B.1.1.529.2.10.2, mainly found in Japan, from pango-designation issue #569
Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from pango-designation issue #609
Alias of B.1.1.529.2.10.4, mainly found in India, from pango-designation issue #898
Alias of B.1.1.529.2.11, France lineage, from pango-designation issue #491
Alias of B.1.1.529.2.12, North America and Europe lineage, from pango-designation issue #499
Alias of B.1.1.529.2.12.1, USA and Canada lineage, from pango-designation issue #499
Alias of B.1.1.529.2.12.1.1, Peru lineage, from pango-designation issue #679
Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from pango-designation issue #767
Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from pango-designation issue #784
Alias of B.1.1.529.2.12.1.4, Israel lineage
Alias of B.1.1.529.2.12.1.5, mainly found in USA, from pango-designation issue #763
Alias of B.1.1.529.2.12.1.6, Peru lineage, from pango-designation issue #836
Alias of B.1.1.529.2.12.1.7, found in Peru, from pango-designation issue #1157
Alias of B.1.1.529.2.12.2, mainly found in Australia, from pango-designation issue #686
Alias of B.1.1.529.2.13, Europe lineage, from pango-designation issue #531
Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from pango-designation issue #785
Alias of B.1.1.529.2.14, Denmark lineage, from pango-designation issue #512
Alias of B.1.1.529.2.15, South Africa lineage, from pango-designation issue #533
Alias of B.1.1.529.2.16, UK lineage, from pango-designation issue #534
Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from pango-designation issue #520
Alias of B.1.1.529.2.18, UK lineage, from pango-designation issue #528
Alias of B.1.1.529.2.19, Germany lineage, from pango-designation issue #535
Alias of B.1.1.529.2.20, Canada lineage, from pango-designation issue #544
Alias of B.1.1.529.2.21, Canada and USA lineage, from pango-designation issue #547
Alias of B.1.1.529.2.22, UK lineage, from pango-designation issue #562
Alias of B.1.1.529.2.23, UK lineage, from pango-designation issue #546
Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from pango-designation issue #532
Alias of B.1.1.529.2.25.1, Slovakia lineage
Alias of B.1.1.529.2.27, Thailand lineage
Alias of B.1.1.529.2.28, Singapore lineage
Alias of B.1.1.529.2.30, Curacao lineage
Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from pango-designation issue #819
Alias of B.1.1.529.2.32, Indonesia lineage
Alias of B.1.1.529.2.33, Australia lineage
Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from pango-designation issue #554
Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from pango-designation issue #565
Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from pango-designation issue #572
Alias of B.1.1.529.2.38, lineage in India and other countries, from pango-designation issue #541
Alias of B.1.1.529.2.38.1, India lineage, from pango-designation issue #809
Alias of B.1.1.529.2.38.2, mainly found in India, from pango-designation issue #828
Alias of B.1.1.529.2.38.3, mainly found in India, from pango-designation issue #840
Alias of B.1.1.529.2.38.4, mainly found in India, from pango-designation issue #746
Alias of B.1.1.529.2.38.3.1, mainly found in India, from pango-designation issue #913
Alias of B.1.1.529.2.39, mainly found in England, from pango-designation issue #575
Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from pango-designation issue #542
Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from pango-designation issue #542
Alias of B.1.1.529.2.41, mainly found in England and Scotland, from pango-designation issue #586
Alias of B.1.1.529.2.42, mainly found in Australia, from pango-designation issue #610
Alias of B.1.1.529.2.43, mainly found in India, from pango-designation issue #612
Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from pango-designation issue #613
Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from pango-designation issue #616
Alias of B.1.1.529.2.46, mainly found in Scotland, from pango-designation issue #626
Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from pango-designation issue #631
Alias of B.1.1.529.2.48, mainly found in USA, Scotland and England, from pango-designation issue #634
Alias of B.1.1.529.2.49, mainly found in France, England and USA, from pango-designation issue #640
Alias of B.1.1.529.2.50, mainly found in Scotland and England, from pango-designation issue #641
Alias of B.1.1.529.2.51, mainly found in Denmark, from pango-designation issue #644
Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from pango-designation issue #648
Alias of B.1.1.529.2.53, mainly found in Denmark, from pango-designation issue #651
Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from pango-designation issue #658
Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from pango-designation issue #660
Alias of B.1.1.529.2.56, mainly found in Europe, from pango-designation issue #668
Alias of B.1.1.529.2.56.1, mainly found in Japan, from pango-designation issue #745
Alias of B.1.1.529.2.57, Malaysia, Singapore and Australia lineage
Alias of B.1.1.529.2.58, Reunion lineage
Alias of B.1.1.529.2.59, mainly found in USA, from pango-designation issue #672
Alias of B.1.1.529.2.60, Peru and Chile lineage
Alias of B.1.1.529.2.61, Singapore lineage
Alias of B.1.1.529.2.62, Australia lineage
Alias of B.1.1.529.2.64, Indonesia lineage
Alias of B.1.1.529.2.65, Canada and USA lineage
Alias of B.1.1.529.2.67, Slovakia lineage
Alias of B.1.1.529.2.68, South Korea lineage
Alias of B.1.1.529.2.69, Martinique lineage
Alias of B.1.1.529.2.70, Croatia lineage
Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from pango-designation issue #695
Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from pango-designation issue #698
Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from pango-designation issue #632
Alias of B.1.1.529.2.74, mainly found in India, from pango-designation issue #775
Alias of B.1.1.529.2.75, mainly found in India, from pango-designation issue #773
Alias of B.1.1.529.2.75.1, mainly found in India from pango-designation issue #856
Alias of B.1.1.529.2.75.1.1, mainly found in India from pango-designation issue #944, S:R346T on polytomy
Alias of B.1.1.529.2.75.1.1.1, from pango-designation issue #1079, defined by S:G614S
Alias of B.1.1.529.2.75.1.1.2, mainly Austria, issue #1066, defined by S:G261D, S:V308L
Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, issue #1124, defined by S:F490L
Alias of B.1.1.529.2.75.1.1.4, India/England/New Zealand, defined by S:F490V
Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
Alias of B.1.1.529.2.75.1.2.1, Australia/Belgium, defined by S:K182E
Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch
Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from pango-designation issue #1105
Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from issue #1531
Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, pango-designation issue #963
Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, pango-designation issue #1063
Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P
Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I
Alias of B.1.1.529.2.75.3, mainly found in India, pango-designation issue #965
Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965
Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T
Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S
Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from issue #1384
Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V
Alias of B.1.1.529.2.75.3.1.1.5, England/Belgium/France, S:N185S & S:L452R
Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T
Alias of B.1.1.529.2.75.3.2.1, India, defined by S:F486V
Alias of B.1.1.529.2.75.3.2.2, Japan/Israel, defined by S:L455S
Alias of B.1.1.529.2.75.3.2.3, India/Singapore, defined by S:F486I
Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S
Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from pango-designation issue #957
Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from pango-designation issue #957
Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T
Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405
Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from pango-designation issue #1047
Alias of B.1.1.529.2.75.3.6, India, defined by S:G75V followed by S:L455S
Alias of B.1.1.529.2.75.4, mainly found in India, pango-designation issue #935
Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M
Alias of B.1.1.529.2.75.4.1.1, Austria/Australia, S:T307S
Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from issue #1063
Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from pango-designation issue #1292
Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from issue #1063
Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from issue #1179
Alias of B.1.1.529.2.75.5, mainly found in India, pango-designation issue #947
Alias of B.1.1.529.2.75.5.1, mainly found in India, pango-designation issue #994
Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G
Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from pango-designation issue #1257
Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from pango-designation issue #1397
Alias of B.1.1.529.2.75.5.1.3.4, S:V445A, Japan/England/NZ/Russia
Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from pango-designation issue #1327
Alias of B.1.1.529.2.75.5.2, mainly found in India, pango-designation issue #1021
Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S
Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch
Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S
Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch
Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M
Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A
Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy
Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6
Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy
Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, issue #1085
Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T
Alias of B.1.1.529.2.75.9.1, England, defined by S:486V
Alias of B.1.1.529.2.76, mainly found in India and USA, from pango-designation issue #787
Alias of B.1.1.529.2.76.1, mainly found in India, from pango-designation issue #899
Alias of B.1.1.529.2.76.2, found in Japan, from pango-designation issue #939
Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from pango-designation issue #732
Alias of B.1.1.529.2.78, mainly found in India, from pango-designation issue #814
Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from pango-designation issue #812
Alias of B.1.1.529.2.79.1, India lineage, from pango-designation issue #814
Alias of B.1.1.529.2.80, found in Denmark, from pango-designation issue #733
Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from pango-designation issue #874
Alias of B.1.1.529.2.83, mainly found in India, from pango-designation issue #1053
Alias of B.1.1.529.2.85, mainly found in Japan, from pango-designation issue #983
Alias of B.1.1.529.3, from pango-designation issue #367
Alias of B.1.1.529.3.1, mainly found in Poland, from pango-designation issue #540
Alias of B.1.1.529.4, from pango-designation issue #517
Alias of B.1.1.529.4.1, mainly found in South Africa, from pango-designation issue #548
Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from pango-designation issue #667
Alias of B.1.1.529.4.1.2, Austria lineage
Alias of B.1.1.529.4.1.3, Israel lineage
Alias of B.1.1.529.4.1.4, Israel lineage
Alias of B.1.1.529.4.1.5, Israel lineage
Alias of B.1.1.529.4.1.7, Australia lineage
Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from pango-designation issue #800
Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from pango-designation issue #926
Alias of B.1.1.529.4.1.10, mainly found in France, from issue #1073, defined by S:N354D, S:R346T
Alias of B.1.1.529.4.1.10.1, Denmark, Netherlands, England, defined by S:K444R
Alias of B.1.1.529.4.5, Australia lineage
Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from pango-designation issue #741
Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from pango-designation issue #900
Alias of B.1.1.529.4.6.2, Dominican Republic, USA, defined by S:V445A, from pango-designation issue #1198
Alias of B.1.1.529.4.6.3, defined by S:444N, S:460K, S:144-, from pango-designation issue #1195
Alias of B.1.1.529.4.6.4, Oceania, defined by ORF7a:Q62H
Alias of B.1.1.529.4.6.5, global, defined by ORF9b:N36S
Alias of B.1.1.529.4.6.5.1, global, defined by S:N460S
Alias of B.1.1.529.4.7, mainly found in England, South Africa and Scotland, from pango-designation issue #777
Alias of B.1.1.529.4.8, mainly South Africa and Eswatini, from pango-designation issue #670
Alias of B.1.1.529.5, from pango-designation issue #517
Alias of B.1.1.529.5.1, Portugal lineage
Alias of B.1.1.529.5.1.2, mainly found in Denmark, Portugal and Luxembourg, from pango-designation issue #790
Alias of B.1.1.529.5.1.3, mainly found in Germany Portugal and Spain, from pango-designation issue #765
Alias of B.1.1.529.5.1.4, mainly found in Denmark and England, from pango-designation issue #801
Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from pango-designation issue #835
Alias of B.1.1.529.5.1.6, Mexico lineage
Alias of B.1.1.529.5.1.7, Canada lineage
Alias of B.1.1.529.5.1.9, mainly found in England, Luxembourg, Scotland and Ireland from pango-designation issue #786
Alias of B.1.1.529.5.1.10, mainly found in USA, Italy and England, from pango-designation issue #901
Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from pango-designation issue #901
Alias of B.1.1.529.5.1.11, mainly found in Denmark, from pango-designation issue #908
Alias of B.1.1.529.5.1.12, mainly found in Spain, from pango-designation issue #902
Alias of B.1.1.529.5.1.14, mainly found in Brazil
Alias of B.1.1.529.5.1.15, Peru and Brazil lineage
Alias of B.1.1.529.5.1.15.1, found mainly in Brazil and USA, from pango-designation issue #1376
Alias of B.1.1.529.5.1.16, Japan lineage
Alias of B.1.1.529.5.1.17, France lineage
Alias of B.1.1.529.5.1.18, mainly found in USA, from pango-designation issue #930
Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from pango-designation issue #999
Alias of B.1.1.529.5.1.20, mainly found in USA and Belgium, from pango-designation issue #1000
Alias of B.1.1.529.5.1.21, mainly found in Gambia and Japan, from pango-designation issue #958
Alias of B.1.1.529.5.1.21.1, mainly found in Japan, from pango-designation issue #958
Alias of B.1.1.529.5.1.21.2, mainly found in Denmark, Germany and France, from pango-designation issue #1192
Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1273L, from pango-designation issue #1135
Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from pango-designation issue #1242
Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from pango-designation issue #1135
Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from pango-designation issue #1135
Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from pango-designation issue #1135
Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from pango-designation issue #1245
Alias of B.1.1.529.5.1.25.1.1, found in Peru, from pango-designation issue #1245
Alias of B.1.1.529.5.1.25.1.2, found mainly in Peru, from pango-designation issue #1379
Alias of B.1.1.529.5.1.25.1.3 found mainly in Peru, Colombia and USA, from pango-designation issue #1409
Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T
Alias of B.1.1.529.5.1.26.1, Central/Eastern Europe, S:T95I, S:T547K
Alias of B.1.1.529.5.1.27, mainly found in North America, defined by S:R346T
Alias of B.1.1.529.5.1.28, mainly found in North America, defined by S:R346T (and A18480G)
Alias of B.1.1.529.5.1.29, mainly found in Russia, Germany and Estonia, from pango-designation issue #1060
Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from pango-designation issue #991
Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from pango-designation issue #551
Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from pango-designation issue #657
Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from pango-designation issue #618
Alias of B.1.1.529.5.2.1.2, Denmark lineage
Alias of B.1.1.529.5.2.1.3, India lineage
Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from pango-designation issue #825
Alias of B.1.1.529.5.2.1.4, mainly found in England, from pango-designation issue #788
Alias of B.1.1.529.5.2.1.5, Israel lineage
Alias of B.1.1.529.5.2.1.5.1 found mainly in Japan and Israel, from pango-designation issue #1475
Alias of B.1.1.529.5.2.1.5.2 found mainly in Japan, from pango-designation issue #1476
Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from pango-designation issue #821
Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from pango-designation issue #827
Alias of B.1.1.529.5.2.1.7.1, mainly found in Germany, S:G261V, from pango-designation issue #1132
Alias of B.1.1.529.5.2.1.7.4.1, found mainly in USA and Netherlands, from pango-designation issue #1253
Alias of B.1.1.529.5.2.1.7.5.1, found mainly in Germany and Denmark, from pango-designation issue #1317
Alias of B.1.1.529.5.2.1.9, Canada lineage
Alias of B.1.1.529.5.2.1.10, USA lineage
Alias of B.1.1.529.5.2.1.10.1, found mainly in USA and Mexico, from pango-designation issue #1442
Alias of B.1.1.529.5.2.1.11, mainly found in England, S:R346T, from pango-designation issue #837
Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from pango-designation issue #752
Alias of B.1.1.529.5.2.1.13, mainly found in USA, from pango-designation issue #883
Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from pango-designation issue #843
Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from pango-designation issue #893
Alias of B.1.1.529.5.2.1.16, found in USA, from pango-designation issue #942
Alias of B.1.1.529.5.2.1.17, Australia lineage
Alias of B.1.1.529.5.2.1.18, Australia lineage
Alias of B.1.1.529.5.2.1.19, Greece lineage
Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries
Alias of B.1.1.529.5.2.1.21, USA lineage
Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from pango-designation issue #1010
Alias of B.1.1.529.5.2.1.23, mainly found in Czechia, from pango-designation issue #1036
Alias of B.1.1.529.5.2.1.24, mainly found in Indonesia, defined by ORF1a:G683C on S:1020S branch
Alias of B.1.1.529.5.2.1.25, USA lineage, defined by S:445A and C18657T
Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, issue #1142
Alias of B.1.1.529.5.2.1.27, Singapore lineage, defined by ORF1a:A2784V, issue #1140
Alias of B.1.1.529.5.2.1.28, Singapore lineage, defined by ORF1a:Q44L, issue #1141
Alias of B.1.1.529.5.2.1.29, mainly found in Denmark and USA, from pango-designation issue #1162
Alias of B.1.1.529.5.2.1.30, South Africa/England, defined by S:R346T after C25916T, C14599T
Alias of B.1.1.529.5.2.1.32, found mainly in USA, from pango-designation issue #1250
Alias of B.1.1.529.5.2.1.34, found mainly in UK and Canada, from pango-designation issue #1233
Alias of B.1.1.529.5.2.2, France and Martinique lineage
Alias of B.1.1.529.5.2.3.1, Denmark lineage, defined by S:Q677H
Alias of B.1.1.529.5.2.4, Australia lineage
Alias of B.1.1.529.5.2.5, Indonesia lineage
Alias of B.1.1.529.5.2.6, global lineage, S:R346T, from pango-designation issue #870
Alias of B.1.1.529.5.2.6.1.1, Portugal, France, Denmark, UK lineage, S:V445A
Alias of B.1.1.529.5.2.7, global lineage, from pango-designation issue #924
Alias of B.1.1.529.5.2.7.1, found mainly in Belgium, Netherlands and Luxembourg, from pango-designation issue #1247
Alias of B.1.1.529.5.2.8, Israel lineage
Alias of B.1.1.529.5.2.10, Brazil lineage
Alias of B.1.1.529.5.2.11, Philippines lineage
Alias of B.1.1.529.5.2.12, Japan lineage
Alias of B.1.1.529.5.2.13, mainly found in England, from pango-designation issue #959
Alias of B.1.1.529.5.2.14, mainly found in Denmark, Canada and Pakistan, from pango-designation issue #1002
Alias of B.1.1.529.5.2.16, Indonesia lineage, defined by ORF1a:A3697V, indirectly from pango-designation issue #1065
Alias of B.1.1.529.5.2.16.1, defined by S:444M and S:460K, from pango-designation issue #1065
Alias of B.1.1.529.5.2.18, mainly Scandinavia, defined by S:K444R on ORF1b:1050N branch, from pango-designation issue #1025
Alias of B.1.1.529.5.2.18.1.3, found mainly in Denmark and Japan, from pango-designation issue #1355
Alias of B.1.1.529.5.2.19, mainly Scandinavia, defined by ORF3a:T14I on ORF1b:1050N branch, from issue #916
Alias of B.1.1.529.5.2.20, mainly Indonesia, defined by C23707T on ORF1b:1050N branch to reduce unspecified BA.5.2
Alias of B.1.1.529.5.2.20.1, mainly found in Denmark, from pango-designation issue #1019, formerly BA.5.2.17
Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1b:1050N branch to reduce unspecified BA.5.2
Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from pango-designation issue #945
Alias of B.1.1.529.5.2.23, mainly found in USA, from pango-designation issue #1090
Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch
Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, issue #1120
Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from pango-designation issue #1452
Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F
Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K
Alias of B.1.1.529.5.2.24.3, found mainly in Singapore and USA, from pango-designation issue #1121
Alias of B.1.1.529.5.2.25, mainly found in France, USA and Canada, from pango-designation issue #1111
Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K
Alias of B.1.1.529.5.2.26, most common in Thailand, defined by ORF3a:L108V, from pango-designation issue #1133
Alias of B.1.1.529.5.2.27, most common in Vietnam, defined by ORF1a:I2332V, from pango-designation issue #1133
Alias of B.1.1.529.5.2.27.1, US and Mexico lineage, defined by S:K97T, originally designated as BA.5.2.15 from issue #1054
Alias of B.1.1.529.5.2.26.1, mainly found in Germany, Poland and Denmark, from pango-designation issue #1126
Alias of B.1.1.529.5.2.28, most common in Malaysia, defined by ORF1a:T1437I, from pango-designation issue #1133
Alias of B.1.1.529.5.2.29, mainly found in Denmark, from pango-designation issue #1050
Alias of B.1.1.529.5.2.30, Europe lineage, defined by S:G446D
Alias of B.1.1.529.5.2.31, US lineage, defined by S:L84I
Alias of B.1.1.529.5.2.31.1, US lineage, defined by S:G446D, S:A688T
Alias of B.1.1.529.5.2.31.2, US lineage, defined by S:A435S
Alias of B.1.1.529.5.2.32, Russia lineage, defined by S:N450D
Alias of B.1.1.529.5.2.33, UK lineage, defined by ORF8:P93S
Alias of B.1.1.529.5.2.33.1, UK lineage, defined by S:R346I
Alias of B.1.1.529.5.2.34, mainly found in Israel and USA, from pango-designation issue #992
Alias of B.1.1.529.5.2.35, Pakistan lineage, defined by S:R346T after G28423C and C7006T
Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T
Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T
Alias of B.1.1.529.5.2.37, found mainly in USA and India, from pango-designation issue #1117
Alias of B.1.1.529.5.2.41, found mainly in Sweden, from pango-designation issue #1328
Alias of B.1.1.529.5.2.42, found mainly in Australia, from pango-designation issue #1266
Alias of B.1.1.529.5.2.43, found mainly in SouthKorea, from pango-designation issue #1312
Alias of B.1.1.529.5.2.44, Indonesia/Malaysia/SouthKorea/global, ORF1a:L2564F
Alias of B.1.1.529.5.2.45, found mainly in Australia, from pango-designation issue #1383
Alias of B.1.1.529.5.2.46 found mainly in Japan, from pango-designation issue #1446
Alias of B.1.1.529.5.2.47 found mainly in Indonesia, Australia, and USA, from pango-designation issue #1496
Alias of B.1.1.529.5.2.47.1 found mainly in Indonesia, Germany, and USA, from pango-designation issue #1496
Alias of B.1.1.529.5.2.48, China, C2710T, C8626T, T17208C, from pango-designation issue #1471
Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from pango-designation issue #550
Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from pango-designation issue #625
Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from pango-designation issue #625
Alias of B.1.1.529.5.3.1.1.1, Germany lineage
Alias of B.1.1.529.5.3.1.1.1.1, found globally, from pango-designation issue #931
Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from pango-designation issue #993
Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from issue #993
Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, found mainly in USA, from pango-designation issue #1420
Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1 found mainly in UK and Denmark, from pango-designation issue #1463
Alias of B.1.1.529.5.3.1.1.1.1.1.1.13, Denmark/Israel/Switzerland/France, E:V62F and S:Y144-
Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from pango-designation issue #1402
Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082
Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from issue #1082
Alias of B.1.1.529.5.3.1.1.1.1.1.4, England and Denmark, defined by S:R190T
Alias of B.1.1.529.5.3.1.1.1.1.1.6, US lineage, defined by ORF1a:G94C
Alias of B.1.1.529.5.3.1.1.1.1.1.9, US lineage, defined by ORF1a:V2604I followed by S:346T (independent from BQ.1.1)
Alias of B.1.1.529.5.3.1.1.1.1.1.13, international lineage, ORF1a:V627I
Alias of B.1.1.529.5.3.1.1.1.1.1.13.1 found mainly in USA and Europe, from pango-designation issue #1400
Alias of B.1.1.529.5.3.1.1.1.1.1.15, international lineage, ORF1a:L3116F
Alias of B.1.1.529.5.3.1.1.1.1.1.16, international lineage, ORF1a:A540V
Alias of B.1.1.529.5.3.1.1.1.1.1.17, Denmark/Germany, S:K444T mutated further to S:444M
Alias of B.1.1.529.5.3.1.1.1.1.1.23, Singapore/Indonesia/Australia, A2653G and S:Y144-
Alias of B.1.1.529.5.3.1.1.1.1.1.25.1, found mainly in USA, from pango-designation issue #1451
Alias of B.1.1.529.5.3.1.1.1.1.1.26, found mainly in Denmark, from pango-designation issue #1315
Alias of B.1.1.529.5.3.1.1.1.1.1.26.1, found mainly in Denmark, from pango-designation issue #1369
Alias of B.1.1.529.5.3.1.1.1.1.1.28, found mainly in USA, from pango-designation issue #1415
Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from pango-designation issue #923
Alias of B.1.1.529.5.3.1.1.1.2, Germany lineage, defined by ORF9b:S50L
Alias of B.1.1.529.5.3.1.1.1.2.1, Germany lineage, defined by S:N450D
Alias of B.1.1.529.5.3.1.1.2.1, Panama, Canada, USA, defined by S:V445A, from issue #1095
Alias of B.1.1.529.5.3.1.1.3, Finland and Estonia lineage
Alias of B.1.1.529.5.3.1.1.4, America lineage, ORF1b:V1787I
Alias of B.1.1.529.5.3.1.2, Belgium lineage
Alias of B.1.1.529.5.3.1.4, Bangladesh, defined by ORF1a:T3308N, from issue #1115
Alias of B.1.1.529.5.3.1.4.1, Bangladesh, defined by S:P209L, S:R346T, from issue #1115
Alias of B.1.1.529.5.3.1.4.1.1, Bangladesh, defined by S:K444R, from issue #1115
Alias of B.1.1.529.5.3.1.4.2, Bangladesh, defined by S:K444N & S:N460K, from issue #1114
Alias of B.1.1.529.5.3.1.9, found mainly in Brazil, from pango-designation issue #1302
Alias of B.1.1.529.5.3.1.10, S:K444T, S:N460K, mainly Brazil, from issue #1411
Alias of B.1.1.529.5.3.2, mainly found in Germany, from pango-designation issue #697
Alias of B.1.1.529.5.3.4, Germany lineage
Alias of B.1.1.529.5.3.5, mainly found in South Africa, from pango-designation issue #1042
Alias of B.1.1.529.5.5, mainly found in USA, from pango-designation issue #656
Alias of B.1.1.529.5.5.1, mainly found in USA, from pango-designation issue #873
Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from pango-designation issue #938
Alias of B.1.1.529.5.5.3, USA lineage, from pango-designation issue #1015
Alias of B.1.1.529.5.6.2, mainly found in USA, Belgium and Mexico, from pango-designation issue #903
Alias of B.1.1.529.5.6.3, mainly found in England, from pango-designation issue #1118
Alias of B.1.1.529.5.6.4, found in USA and Europe, from pango-designation issue #1191
Alias of B.1.1.529.5.6.2.1, Mexico lineage, from pango-designation issue #1059, defined by S:460K
Alias of B.1.1.529.5.6.2.1.1, Mexico lineage, defined by S:V486A, issue #1341
Alias of B.1.1.529.5.7, Australia lineage
Alias of B.1.1.529.5.8, mainly found in England, USA, Denmark and Scotland, from pango-designation issue #743
Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from pango-designation issue #753
Alias of B.1.1.529.5.10, mainly found in Philippines, Canada, and USA, from pango-designation issue #936
Alias of B.1.1.529.5.10.1, mainly from Philippines, defined by S:346T, from pango-designation issue #1031
Alias of B.1.1.529.5.10.1.1, found mainly in UK, from pango-designation issue #1270
Alias of B.1.1.529.5.10.1.1.1 found mainly in USA, from pango-designation issue #1494
Luxembourg lineage (also England, Belgium etc.)
Predominantly Indian lineage with global records (inc. Canada)
Jordan/Saudi Arabia (single recent record from USA)
Lineage with sequences majoritively from Finland
Hong Kong lineage, initially associated with travellers from Nepal. Epidemiologically and phylogenetically supported.
South/ Central American lineage (mostly Trinidad and Colombia, an a small cluster from Norwich)
English lineage with some Australian, New Zealand and European sequences
Large European lineage, sequences from BeNeLuX, Denmark, Switzerland, Hungary and UK.
Alias of B.1.160.16.1, Denmark, grown out of big swiss cluster
Was part of B.1.160.7 but this is now split on tree. English lineage last seen 2020-11-18 in uk, but long branch to a recent French sample sticking out
Major mostly European lineage, result of opening borders summer 2020
England, some Wales, parent is mainland Europe
Danish lineage, contains some previous B.1.177.1
Mostly italian, some swiss, some english
Alias of B.1.177.52.1, Portuguese lineage
Alias of B.1.177.53.1, French and US lineage
Alias of B.1.177.54.1, Northern Irish and Irish lineage
Alias of B.1.177.54.2, Northern Irish lineage
Alias of B.1.177.60.3, Norway and Latvia
Italian lineage from pango-designation issue #19
Lineage from Belgium with a number of key spike mutations and a 9bp spike insertion.
Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf.
Mexico lineage, from pango-designation issue #169
Russia, Germany, Switzerland, Austria. Was B.1.412
USA (removed the polytomy at the base of the lineage)
Lineage of concern detected in South Africa
Sublineage of B.1.351 circulating in Botswana
Sublineage of B.1.351 circulating in Mayotte
Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere
Sublineage of B.1.351 in Spain, from pango-designation issue #211
European, mostly dutch and spanish, some north american
USA lineage (split from whatever Chris reassigns B.1.361 to)
European lineage (mostly France and England)
USA lineage, cleaned up a lot in release 2021-01-20
Danish/ USA lineage, previously part of B.1.21
USA lineage (circulating in Connecticut with the 69-70del, which leads to SGTF. However, they express 484E and 501N in their spike proteins.)
USA lineage, from pango-designation issue #94
Predominantly Mexico lineage, from pango-designation issue #157
Senegal/ Gambian lineage, reassigned from B.1.5.12
European lineage within diversity of B.1.416. Previously assigned E.1
Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262)
A lineage predominantly circulating in California but with exports to other countries. Characterised by the spike L452R mutation but also has spike:W152C orf1ab:D5584Y and N:T205I.
Colorado lineage from pango-designation issue #37
Australian lineage (previously a couple part of B.1.25, B.1.295)
USA lineage reassigned from previous tree
Lineage circulating in multiple countries
USA lineage (VA), previously B.1.328 and B.1.317
UK, contains B.1.466 which is reassigned (see below)
Global lineage containing two new sublineages (see below)
Alias of B.1.466.2.1, predominantly Papua New Guinea with some Australia sequences
Alias of B.1.466.2.3, predominantly Australia with some Papua New Guinea and Singapore sequences
Indonesia/Singapore. Seq names misassigned in original file
USA (could be dissolved - sequences jumped out, previously split from B.1.3)
Mostly Argentina, some Spain, NL, Hong Kong (was B.1.3.2)
Iceland, Sweden, North America (could be dissolved)
USA, Canada, England, Germany etc. (could be dissolved / reassigned to B.1)
International lineage with E484K, del69-70 among other defining mutations.
A lineage predominantly circulating in New York but with a few exports to other countries. Characterised by spike mutations T95I and D253G, plus others. The most frequent spike mutation pattern is L5F T95I D253G E484K D614G A701V, with a smaller fraction having S477N instead of E484K. Spike mutation E484K is present in about half of this lineage (as of 2021-02-10) - Very possible not all new additions carry T95I and D253G (someone should check this, e.g. for USA/NY-Wadsworth-21008455-01/2021 and Aruba/AW-RIVM-11403/2021)
USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I".
Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I".
Spain lineage, from pango-designation issue #116
USA lineage (previously part of B.1.320 that jumped to a new part of the tree)
France, Algeria (previously part of B.1.367 that jumped to a new part of the tree)
USA, Canada (previously part of B.1.311 that jumped to a new part of the tree)
USA lineage (previously part of B.1.325 that jumped to a new part of the tree)
England (previously part of B.1.369 that jumped to a new part of the tree - could also be withdrawn).
Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262), split out from B.1.428
France lineage, pango-designation issue #31
Predominantly India lineage with several spike mutations, pango-designation issue #38
Predominantly India lineage with 484Q, pango-designation issue #49
Predominantly India lineage with several spike mutations, pango-designation issue #49
Alias of B.1.617.2.1, in several European countries, from pango-designation issue #95
Alias of B.1.617.2.2, in USA with K417N, from pango-designation issue #107
Alias of B.1.617.2.3, USA lineage, from pango-designation issue #121
Alias of B.1.617.2.3.1, USA lineage, from pango-designation issue #147
Alias of B.1.617.2.3.2, Peru lineage, from pango-designation issue #312
Alias of B.1.617.2.3.3, USA lineage, from pango-designation issue #365
Alias of B.1.617.2.4, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.4.1, UK lineage, from pango-designation issue #214
Alias of B.1.617.2.4.2, predominantly UK lineage, from pango-designation issue #223
Alias of B.1.617.2.4.2.1, predominantly UK lineage, from pango-designation issue #248
Alias of B.1.617.2.4.2.2, UK lineage, from pango-designation issue #249
Alias of B.1.617.2.4.2.3, European lineage, from pango-designation issue #356
Alias of B.1.617.2.4.2.4, European lineage
Alias of B.1.617.2.4.2.5, UK lineage, from pango-designation issue #543
Alias of B.1.617.2.4.3, lineage in several countries, from pango-designation issue #222
Alias of B.1.617.2.4.4, lineage in several European countries, from pango-designation issue #237
Alias of B.1.617.2.4.5, predominantly Lithuania lineage, from pango-designation issue #241
Alias of B.1.617.2.4.6, European lineage, from pango-designation issue #264
Alias of B.1.617.2.4.7, lineage in Aruba and other countries, from pango-designation issue #291
Alias of B.1.617.2.4.8, UK lineage, from pango-designation issue #304
Alias of B.1.617.2.4.9, European lineage, from pango-designation issue #332
Alias of B.1.617.2.4.10, European lineage, from pango-designation issue #332
Alias of B.1.617.2.4.11, European lineage
Alias of B.1.617.2.4.13, European lineage
Alias of B.1.617.2.4.14, lineage in Denmark and other countries
Alias of B.1.617.2.4.15, Denmark lineage
Alias of B.1.617.2.4.16, Gibraltar lineage
Alias of B.1.617.2.4.17, Lithuania lineage
Alias of B.1.617.2.5, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.5.1, Portugal lineage
Alias of B.1.617.2.5.2, Portugal lineage
Alias of B.1.617.2.5.4, European lineage
Alias of B.1.617.2.5.5, European lineage, formally AY.97
Alias of B.1.617.2.5.6, lineage in Saint Vincent and the Grenadines, Grenada and other countries
Alias of B.1.617.2.5.7, mainly found in Israel, from pango-designation issue #387
Alias of B.1.617.2.6, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.7, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.7.2, predominantly Italy lineage in multiple other European countries
Alias of B.1.617.2.8, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.9, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.9.2, European lineage
Alias of B.1.617.2.9.2.1, Canada lineage
Alias of B.1.617.2.9.2.2, Sweden lineage, from pango-designation issue #284
Alias of B.1.617.2.10, UK lineage, from pango-designation issue #180
Alias of B.1.617.2.11, UK lineage, from pango-designation issue #142
Alias of B.1.617.2.16, lineage in Kenya and multiple other countries
Alias of B.1.617.2.17, Ireland and Northern Ireland lineage
Alias of B.1.617.2.19, South Africa lineage
Alias of B.1.617.2.20, USA and Mexico lineage
Alias of B.1.617.2.20.1, Czech Republic lineage
Alias of B.1.617.2.21, lineage predominantly in Italy and Switzerland
Alias of B.1.617.2.22, predominantly Portugal lineage
Alias of B.1.617.2.23, predominantly Singapore and Indonesia lineage, from pango-designation issue #175
Alias of B.1.617.2.23.1, Singapore lineage, from pango-designation issue #237
Alias of B.1.617.2.23.2, European lineage, from pango-designation issue #265
Alias of B.1.617.2.24, predominantly Indonesia lineage, from pango-designation issue #175
Alias of B.1.617.2.25, USA lineage, from pango-designation issue #181
Alias of B.1.617.2.25.1, Canada and USA lineage, from pango-designation issue #313
Alias of B.1.617.2.25.1.1, Peru lineage, from pango-designation issue #355
Alias of B.1.617.2.25.1.2, Trinidad and Tobago lineage
Alias of B.1.617.2.25.2, Argentina lineage
Alias of B.1.617.2.25.3, Canada and USA lineage
Alias of B.1.617.2.26, USA and Mexico lineage, from pango-designation issue #188
Alias of B.1.617.2.26.1, Peru lineage, from pango-designation issue #278
Alias of B.1.617.2.27, Canada lineage, from pango-designation issue #196
Alias of B.1.617.2.28, Sri Lanka lineage, from pango-designation issue #199
Alias of B.1.617.2.29, Japan lineage, from pango-designation issue #208
Alias of B.1.617.2.29.1, Japan lineage, from pango-designation issue #224
Alias of B.1.617.2.29.2, Japan lineage, from pango-designation issue #381
Alias of B.1.617.2.30, Thailand and Cambodia lineage, from pango-designation issue #207
Alias of B.1.617.2.31, lineage associated with Myanmar. At the time of designation, almost all sequences in this lineage were from Myanmar or had travel history from Myanmar, from pango-designation issue #206
Alias of B.1.617.2.32, South Africa lineage, from pango-designation issue #209
Alias of B.1.617.2.33, Lineage circulating mostly in Belgium, Denmark, France, Netherlands, Germany, from pango-designation issues #215 and #219
Alias of B.1.617.2.33.1, Reunion and France lineage, from pango-designation issue #370
Alias of B.1.617.2.33.2, mainly found in Germany, Poland, Gibraltar and Spain, from pango-designation issue #403
Alias of B.1.617.2.34, lineage with spike Q677H circulating in multiple countries, from pango-designation issue #217
Alias of B.1.617.2.34.1, lineage in multiple countries including Gambia, Senegal, Benin and Mali, from pango-designation issue #255
Alias of B.1.617.2.34.1.1, Brazil and Chile lineage
Alias of B.1.617.2.34.2, lineage in multiple countries including Martinique, from pango-designation issue #269
Alias of B.1.617.2.35, lineage with spike E484Q circulating in USA, from pango-designation issue #217
Alias of B.1.617.2.36, lineage predominantly in Nigeria, UK and USA, from pango-designation issue #225
Alias of B.1.617.2.36.1, lineage in Germany and other countries, from pango-designation issue #434
Alias of B.1.617.2.37, lineage predominantly in Liberia, USA and France, from pango-designation issue #228
Alias of B.1.617.2.38, lineage predominantly in South Africa, from pango-designation issue #229
Alias of B.1.617.2.39, predominantly USA lineage, from pango-designation issue #234
Alias of B.1.617.2.39.1, Australia and USA lineage, from pango-designation issue #234
Alias of B.1.617.2.39.1.1, predominantly New Zealand lineage, from pango-designation issue #234
Alias of B.1.617.2.39.1.2, Australia lineage, from pango-designation issue #307
Alias of B.1.617.2.39.1.3, Australia lineage, from pango-designation issue #339
Alias of B.1.617.2.39.1.4, Australian lineage, from pango-designation issue #438
Alias of B.1.617.2.39.2, Peru lineage, from pango-designation issue #295
Alias of B.1.617.2.39.3, Trinidad and Tobago lineage
Alias of B.1.617.2.40, Reunion lineage, from pango-designation issue #237
Alias of B.1.617.2.41, European lineage, from pango-designation issue #237
Alias of B.1.617.2.42, European lineage, from pango-designation issue #239
Alias of B.1.617.2.42.1, lineage in Bonaire, Curacao and other countries, from pango-designation issue #331
Alias of B.1.617.2.43, European lineage, from pango-designation issue #240
Alias of B.1.617.2.43.1, Brazil lineage, from pango-designation issue #319
Alias of B.1.617.2.43.2, Brazil lineage, from pango-designation issue #319
Alias of B.1.617.2.43.3, Chile lineage, from pango-designation issue #337
Alias of B.1.617.2.43.4, Switzerland lineage, from pango-designation issue #317
Alias of B.1.617.2.43.5, Portugal lineage, from pango-designation issue #335
Alias of B.1.617.2.43.6, Denmark lineage, from pango-designation issue #315
Alias of B.1.617.2.43.7, Brazil lineage, from pango-designation issue #378
Alias of B.1.617.2.43.8, lineage in Netherlands, Suriname and other countries
Alias of B.1.617.2.43.9, Slovakia lineage
Alias of B.1.617.2.44, USA lineage, from pango-designation issue #242
Alias of B.1.617.2.45, South Africa lineage, from pango-designation issue #246
Alias of B.1.617.2.46, Africa lineage, from pango-designation issue #247
Alias of B.1.617.2.46.1, USA lineage, from pango-designation issue #247
Alias of B.1.617.2.46.2, Germany and Turkey lineage, from pango-designation issue #247
Alias of B.1.617.2.46.3, Brazil lineage, from pango-designation issue #247
Alias of B.1.617.2.46.4, USA lineage, from pango-designation issue #247
Alias of B.1.617.2.46.5, UK lineage, from pango-designation issue #247
Alias of B.1.617.2.46.6, European lineage, from pango-designation issue #247
Alias of B.1.617.2.46.6.1, Italy lineage, from pango-designation issue #369
Alias of B.1.617.2.47, USA lineage, from pango-designation issue #254
Alias of B.1.617.2.55, lineage in Rwanda and other countries
Alias of B.1.617.2.62, USA and Mexico lineage
Alias of B.1.617.2.65, lineage in Bahrain and other countries
Alias of B.1.617.2.69, South Korea lineage
Alias of B.1.617.2.75, USA and European lineage
Alias of B.1.617.2.75.2, Philippines lineage
Alias of B.1.617.2.76, predominantly Malaysia lineage
Alias of B.1.617.2.78, Germany and Turkey lineage
Alias of B.1.617.2.79, predominantly Malaysia lineage
Alias of B.1.617.2.86, Canada and USA lineage
Alias of B.1.617.2.88, lineage in Ghana and other countries
Alias of B.1.617.2.91, lineage in South Africa, Namibia and other countries
Alias of B.1.617.2.91.1, European lineage
Alias of B.1.617.2.95, Maldives and European lineage
Alias of B.1.617.2.98.1, European lineage
Alias of B.1.617.2.98.1.1, mainly found in Germany and Denmark, from pango-designation issue #604
Alias of B.1.617.2.99, South Africa and Nigeria lineage
Alias of B.1.617.2.101, Brazil and Chile lineage
Alias of B.1.617.2.102, Peru and Chile lineage, from pango-designation issue #272
Alias of B.1.617.2.102.1, Peru lineage, from pango-designation issue #325
Alias of B.1.617.2.102.2, Peru lineage, from pango-designation issue #330
Alias of B.1.617.2.103.1, Argentina lineage
Alias of B.1.617.2.103.2, Canada lineage
Alias of B.1.617.2.104, Sri Lanka lineage
Alias of B.1.617.2.106, lineage in Jordan and other countries
Alias of B.1.617.2.108, lineage in Pakistan and other countries
Alias of B.1.617.2.109, lineage in Nigeria and other countries
Alias of B.1.617.2.112, lineage in India and other countries, from pango-designation issue #283
Alias of B.1.617.2.112.1, Bahrain lineage
Alias of B.1.617.2.112.2, mainly found in India, from pango-designation issue #385
Alias of B.1.617.2.112.3, mainly found in Israel, from pango-designation issue #388
Alias of B.1.617.2.113, USA and Mexico lineage
Alias of B.1.617.2.119.1, Chile and Peru lineage, from pango-designation issue #336
Alias of B.1.617.2.119.2, USA lineage, from pango-designation issue #288
Alias of B.1.617.2.120.2, South Africa lineage
Alias of B.1.617.2.120.2.1, European lineage
Alias of B.1.617.2.121, European lineage
Alias of B.1.617.2.121.1, Poland and Germany lineage
Alias of B.1.617.2.122, European lineage
Alias of B.1.617.2.122.1, Israel lineage, formally AY.12 but renamed as descends from AY.122 which was designated after AY.12, from pango-designation issue #170
Alias of B.1.617.2.122.2, Finland and Estonia lineage, from pango-designation issue #273
Alias of B.1.617.2.122.3, Denmark and Sweden lineage, from pango-designation issue #371
Alias of B.1.617.2.122.4, South America and USA lineage
Alias of B.1.617.2.122.5, South Korea lineage
Alias of B.1.617.2.122.6, mainly found in France, from pango-designation issue #394
Alias of B.1.617.2.123, Predominantly Belgium and France lineage
Alias of B.1.617.2.123.1, Belgium lineage, from pango-designation issue #354
Alias of B.1.617.2.124, lineage in Portugal and other European countries
Alias of B.1.617.2.124.1, lineage in Portugal and other European countries, from pango-designation issue #345
Alias of B.1.617.2.124.1.1, lineage in Mauritius and other countries
Alias of B.1.617.2.125, European lineage, from pango-designation issue #328
Alias of B.1.617.2.125.1, Australia lineage
Alias of B.1.617.2.126, European lineage, from pango-designation issue #253
Alias of B.1.617.2.127, lineage in India and other countries, from pango-designation issue #342
Alias of B.1.617.2.127.1, lineage in Djibouti and other countries, from pango-designation issue #352
Alias of B.1.617.2.127.3, Qatar lineage, from pango-designation issue #525
Alias of B.1.617.2.128, lineage in Estonia, Georgia and other countries, from pango-designation issue #309
Alias of B.1.617.2.129, European lineage, from pango-designation issue #329
Alias of B.1.617.2.130, Bahrain lineage, from pango-designation issue #351
Alias of B.1.617.2.131, mainly reported from Bangladesh, from pango-designation issue #373
Alias of B.1.617.2.132, Denmark lineage, from pango-designation issue #379
Alias of B.1.617.2.133, France Germany and UK lineage (with some samples from elsewhere, notably Senegal and Ghana), from pango-designation issue #380
European lineage within diversity of B.1.617.2. Previously assigned AY.39.4, pango-designation issue #406
India lineage in West Bengal, pango-designation issue #46
Lineage in multiple countries, potentially originated in Cameroon and introduced into Europe, pango-designation issue #44
South Korea lineage, from pango-designation issue #160
Lineage in multiple countries, potentially originated in Cameroon and spread within Europe post-introduction, pango-designation issue #54
Lineage predominantly in Colombia with several spike mutations, pango-designation issue #57
Lineage in multiple countries, pango-designation issue #115
Alias of B.1.621.1.2, from pango-designation issue #232
Lineage in multiple countries, from pango-designation issue #232
Reunion lineage, pango-designation issue #58
Predominantly USA lineage with mutations of interest, from pango-designation issue #25
Predominantly Colombia and USA lineage, from pango-designation issue #93
Europe and USA lineage, from pango-designation issue #118
USA, Mexico and Honduras lineage, from pango-designation issue #130
Lineage circulating in several countries, from pango-designation issue #132
Lineage in several countries, from pango-designation issue #137
USA and Mexico lineage, from pango-designation issue #146
Predominantly Mexico lineage, from pango-designation issue #156
India lineage, from pango-designation issue #155
Mexico and USA lineage, from pango-designation issue #159
USA, Mexico and Honduras lineage, from pango-designation issue #173
Added as B.1.526.1 15 Mar 2021, but turned out not to be a descendant of B.1.526; was folded into B.1.526 from 14 Jun - 18 Aug 2021; now a separate lineage to leave B.1.526 more congruent with Iota (Nextstrain 21F / original B.1.526); pango-designation issue #154
USA lineage, from pango-designation issue #353
South Africa lineage, from pango-designation issue #205
Lineage sequenced in USA, potentially associated with Puerto Rico, from pango-designation issue #161
Lineage in Africa and Europe, from pango-designation issue #297
Lineage in Africa and Europe, from pango-designation issue #362
Lineage from pango-designation issue #362
Lineage in white-tailed deer, from pango-designation issue #453
European wide lineage with active sublineages
European wide lineage with active cases with activity in Switzerland
European sublineage highly represented in Turkey
A European lineage - Germany & UK predominantly
Lineage from Kazakhstan within the B.4 diversity
Cryptic lineage in Iran? Occasional international appearances, most recently Nov 2020
European lineage with sequences from the Netherlands, UK, Austria, Slovakia
Lineage with representation from mainly UK sequences, but also sequences from Portugal, Iceland and Brazil
Reassigned from B.2.5, UK/ Australia/ New Zealand lineage
Previously B.2.2, USA/ UK/ Australian lineage
Previously B.2.1. Large lineage majoritively from UK and Australia with representation from Europe, Jordan, USA, India, Ghana, South Korea
Redesignated from B.11 (split), UK/Danish
Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage
Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, discussed in pango-designation issue #189. Formally B.1.628
Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from pango-designation issue #263
Recombinant lineage of Delta and BA.1, France and Denmark lineage, from pango-designation issue #444
Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #454
Recombinant lineage of Delta and BA.1, UK lineage, from pango-designation issue #445
Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #447
Recombinant lineage of BA.1 and BA.2, Denmark lineage, from pango-designation issue #448
Recombinant lineage of BA.1 and BA.2, Finland lineage, from pango-designation issue #449
Recombinant lineage of BA.1 and BA.2, Belgium lineage, from pango-designation issue #460
Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #464
Recombinant lineage of BA.1.1 and BA.2, European lineage, from pango-designation issue #472
Recombinant lineage of BA.1 and BA.2, UK lineage, from pango-designation issue #480
Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #481
Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #468
Recombinant lineage of BA.1.1 and BA.2, UK lineage, from pango-designation issue #469
Recombinant lineage of Delta and BA.1.1, USA lineage, from pango-designation issue #471
Recombinant lineage of BA.1 and BA.2, South Africa lineage, from pango-designation issue #478
Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from pango-designation issue #522
Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from pango-designation issue #463
Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from pango-designation issue #591
Recombinant lineage of BA.1 and BA.2, predominantly in USA, from pango-designation issue #606
Recombinant lineage of BA.2 and BA.1, USA lineage, from pango-designation issue #636
Recombinant lineage of BA.1 and BA.2, USA lineage, from pango-designation issue #664
Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #665
Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from pango-designation issue #590
Recombinant lineage of BA.2 and BA.1, Germany lineage, from pango-designation issue #607
Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from pango-designation issue #637
Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from pango-designation issue #676
Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from pango-designation issue #709
Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from pango-designation issue #755
Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from pango-designation issue #826
Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #823
Recombinant lineage of BA.1 and BA.2, Germany lineage, from pango-designation issue #757
Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from pango-designation issue #759
Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from pango-designation issue #771
Recombinant lineage of BA.2* and BA.1*, USA lineage, from pango-designation issue #789
Recombinant lineage of BA.1* and BA.2*, lineage mainly found in Canada, from pango-designation issue #798
Recombinant lineage of BA.1* and BA.2*, Reunion lineage, from pango-designation issue #860
Recombinant lineage of BA.5* and BA.2*, USA lineage, from pango-designation issue #882
Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from pango-designation issue #885
Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from pango-designation issue #894
Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from pango-designation issue #911
Recombinant lineage of BA.2* and AY.122, Russia lineage, from pango-designation issue #895
Recombinant lineage of BA.2 and AY.45, South Africa lineage, from pango-designation issue #844
South Africa/US lineage with 4 AA substitutions including S:D253G
South Africa with S:R346T and ORF1a:K2108N, from issue #1255
South Africa/Denmark/Israel lineage with ORF1a:Y3765C
South Africa/Mauritius/Switzerland/France, ORF1b:D1869Y
Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from pango-designation issue #797
Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2 from pango-designation issue #844
Recombinant lineage of BJ.1 and BA.2.75 with breakpoint in S1, found in USA and Singapore, from issue #1058
Mostly Bangladesh and Singapore, defined by S:G252V, from issue #1088
Singapore/Denmark, defined by ORF1a:P309L
Singapore, India/Italy, defined by S:A484T
Mainly Denmark, Norway and Sweden, defined by S:S673G, from pango-designation issue #1352
S:F486P, England/South Korea/Singapore/Denmark
Defined by ORF1b:I1988V on ORF1a:D82G branch
Defined by S:Q677R, India-TN/Singapore, from issue #1241
Defined by S:K444R on ORF1a:D82G branch, from issue #1239
Defined by S:A653V on ORF1a:D82G branch, India-TN, Singapore, Australia
Recombinant lineage of BA.2 and B.1.617.2*, predominantly in Philippines, from pango-designation issue #1100
Mostly Philippines, South Korea, US, Singapore, defined by S:L452M, from issue #1130
Mostly Australia, ORF1a:I3619T, ORF8:V114L
Philippines/Netherlands/Denmark, T11269C
Recombinant lineage of BA.2.75.2 and BF.5, India and world, from pango-designation issue #1137
Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from pango-designation issue #1246
Recombinant lineage of BA.5.2.3 and CJ.1, Australia, from pango-designation issue #1259
Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from pango-designation issue #896
Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from pango-designation issue #1229
Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from pango-designation issue #1268
Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from pango-designation issue #1418
Recombinant lineage of XBB.1 with S:F486P and BA.2.75, Malaysia, from issue #1532
Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from issue #1441
Recombinant lineage of BA.2.75 and XBB.3, mainly found in USA, from pango-designation issue #1296