SARSMutOnto.owl
type: Ontology
comment: SARSMutOnto is an ontology that describes the SARS-CoV2 genome structure by detailing its component genes. It also describes all the variants listed by the researchers while keeping the hierarchical relationship (variant / sub-variant) between the variants

A lineage
type: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#A
type: NamedIndividual
label: A
has for description: One of the two original haplotypes of the pandemic (A and B). Many sequences originating from China and many global exports; including to South East Asia Japan South Korea Australia the USA and Europe represented in this lineage

A.1 lineage
type: A.1
type: NamedIndividual
label: A.1
has for description: USA lineage

y1464c
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.1 lineage
mutation name: y1464c

p1427l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.1 lineage
mutation name: p1427l

A.2 lineage
type: A.2
type: NamedIndividual
label: A.2
has for description: Mostly Spanish lineage now includes South and Central American sequences, other European countries and Kazakhstan.

f3071y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2 lineage
has for lineage: A.2.2 lineage
has for lineage: A.2.3 lineage
has for lineage: A.2.4 lineage
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: f3071y

s197l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.2 lineage
has for lineage: A.2.2 lineage
has for lineage: A.2.3 lineage
has for lineage: A.2.4 lineage
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: s197l

g196v
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.2 lineage
has for lineage: A.2.2 lineage
has for lineage: A.2.3 lineage
has for lineage: A.2.4 lineage
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: g196v

A.2.2 lineage
type: A.2.2
type: NamedIndividual
label: A.2.2
has for description: Australian lineage

p13l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.2.2 lineage
has for lineage: C.1.2 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: P.7 lineage
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: p13l

A.2.3 lineage
type: A.2.3
type: NamedIndividual
label: A.2.3
has for description: Scottish lineage

q213k
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.2.3 lineage
mutation name: q213k

A.2.4 lineage
type: A.2.4
type: NamedIndividual
label: A.2.4
has for description: Panama lineage

A.2.5 lineage
type: A.2.5
type: NamedIndividual
label: A.2.5
has for description: Central American/ USA lineage

t3255i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: P.6 lineage
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: t3255i

p1000l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: A.27 lineage
has for lineage: C.40 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: p1000l

s74f
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: C.19 lineage
has for lineage: P.1.12.1 lineage
mutation name: s74f

m234i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: A.30 lineage
has for lineage: C.23 lineage
has for lineage: P.2 lineage
mutation name: m234i

d614g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: A.18 lineage
has for lineage: A.19 lineage
has for lineage: B.1 lineage
has for lineage: B.1.1 lineage
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
has for lineage: B.1.1.3 lineage
has for lineage: B.1.1.4 lineage
has for lineage: B.1.1.5 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: B.1.1.8 lineage
has for lineage: B.1.1.10 lineage
has for lineage: L.1 lineage
has for lineage: L.2 lineage
has for lineage: L.3 lineage
has for lineage: L.4 lineage
has for lineage: B.1.1.12 lineage
has for lineage: B.1.1.13 lineage
has for lineage: B.1.1.14 lineage
has for lineage: B.1.1.15 lineage

l4f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: l4f

k1657e
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: k1657e

h3580q
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: h3580q

l452r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
has for lineage: A.27 lineage
has for lineage: C.16 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.40 lineage
has for lineage: L.3 lineage
has for lineage: P.4 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.429 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: l452r

p383l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: p383l

p365s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: p365s

del141/143
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.2.5 lineage
has for lineage: A.2.5.1 lineage
has for lineage: A.2.5.2 lineage
has for lineage: A.2.5.3 lineage
mutation name: del141/143

A.2.5.1 lineage
type: A.2.5.1
type: NamedIndividual
label: A.2.5.1
has for description: Costa Rica lineage from pango-designation issue #33

a486v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.2.5.1 lineage
mutation name: a486v

A.2.5.2 lineage
type: A.2.5.2
type: NamedIndividual
label: A.2.5.2
has for description: Predominantly Italy lineage

m620t
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.2.5.2 lineage
mutation name: m620t

a105s
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: A.2.5.2 lineage
mutation name: a105s

A.2.5.3 lineage
type: A.2.5.3
type: NamedIndividual
label: A.2.5.3
has for description: Predominantly Ecuador lineage, from pango-designation issue #168

s477n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.2.5.3 lineage
has for lineage: C.1.1 lineage
has for lineage: C.36.3.1 lineage
has for lineage: D.2 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s477n

A.3 lineage
type: A.3
type: NamedIndividual
label: A.3
has for description: USA lineage

p971l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.3 lineage
has for lineage: P.4 lineage
mutation name: p971l

f1757l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.3 lineage
mutation name: f1757l

m4071i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.3 lineage
mutation name: m4071i

v62l
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: A.3 lineage
mutation name: v62l

a208g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.3 lineage
mutation name: a208g

d75e
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.3 lineage
mutation name: d75e

A.4 lineage
type: A.4
type: NamedIndividual
label: A.4
has for description: USA lineage

s202n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.4 lineage
has for lineage: A.7 lineage
has for lineage: A.9 lineage
has for lineage: A.11 lineage
has for lineage: A.12 lineage
has for lineage: A.15 lineage
has for lineage: A.18 lineage
has for lineage: A.19 lineage
has for lineage: A.21 lineage
has for lineage: A.22 lineage
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
has for lineage: A.24 lineage
has for lineage: A.25 lineage
has for lineage: A.26 lineage
has for lineage: A.27 lineage
has for lineage: A.28 lineage
has for lineage: A.29 lineage
has for lineage: A.30 lineage
mutation name: s202n

v972i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.4 lineage
mutation name: v972i

A.5 lineage
type: A.5
type: NamedIndividual
label: A.5
has for description: A lineage with a lot of representation from Spanish-speaking countries. A Spanish/ South-American lineage, but now with sequences from an outbreak in Scotland. Also now includes what was previously A.10.

A.6 lineage
type: A.6
type: NamedIndividual
label: A.6
has for description: Thai lineage

l1375f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.6 lineage
mutation name: l1375f

a829t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.6 lineage
mutation name: a829t

v2223l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.6 lineage
mutation name: v2223l

A.7 lineage
type: A.7
type: NamedIndividual
label: A.7
has for description: Indian lineage

g18v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.7 lineage
has for lineage: B.1.1.62 lineage
mutation name: g18v

A.9 lineage
type: A.9
type: NamedIndividual
label: A.9
has for description: Indian lineage

A.11 lineage
type: A.11
type: NamedIndividual
label: A.11
has for description: Ghana/ Senegal lineage

A.12 lineage
type: A.12
type: NamedIndividual
label: A.12
has for description: Sierra Leone lineage

v62f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: A.12 lineage
mutation name: v62f

p2162s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.12 lineage
mutation name: p2162s

a3518v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.12 lineage
mutation name: a3518v

A.15 lineage
type: A.15
type: NamedIndividual
label: A.15
has for description: Sweden/ Denmark lineage

m3655i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.15 lineage
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
has for lineage: A.24 lineage
has for lineage: A.25 lineage
has for lineage: A.26 lineage
has for lineage: A.29 lineage
has for lineage: A.30 lineage
mutation name: m3655i

p1727l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.15 lineage
has for lineage: P.1.9 lineage
mutation name: p1727l

e92k
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: A.15 lineage
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
has for lineage: A.24 lineage
has for lineage: A.25 lineage
has for lineage: A.26 lineage
has for lineage: A.29 lineage
has for lineage: A.30 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: e92k

p748l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.15 lineage
mutation name: p748l

d2179y
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.15 lineage
mutation name: d2179y

d1084y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.15 lineage
mutation name: d1084y

A.16 lineage
type: A.16
type: NamedIndividual
label: A.16
has for description: Japanese lineage

e972k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.16 lineage
mutation name: e972k

A.17 lineage
type: A.17
type: NamedIndividual
label: A.17
has for description: French lineage

l53f
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.17 lineage
mutation name: l53f

q116h
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.17 lineage
mutation name: q116h

q185h
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.17 lineage
mutation name: q185h

A.18 lineage
type: A.18
type: NamedIndividual
label: A.18
has for description: Cote d'Ivoire/ Burkina Faso lineage

q990l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.18 lineage
mutation name: q990l

A.19 lineage
type: A.19
type: NamedIndividual
label: A.19
has for description: Cote d'Ivoire/ Burkina Faso lineage

A.21 lineage
type: A.21
type: NamedIndividual
label: A.21
has for description: Mali/ Burkina Faso lineage

d614n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.21 lineage
mutation name: d614n

v3718f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.21 lineage
has for lineage: C.38 lineage
mutation name: v3718f

a99s
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.21 lineage
mutation name: a99s

A.22 lineage
type: A.22
type: NamedIndividual
label: A.22
has for description: UAE lineage

t945n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.22 lineage
mutation name: t945n

A.23 lineage
type: A.23
type: NamedIndividual
label: A.23
has for description: Ugandan lineage

l3667f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
mutation name: l3667f

q613h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
mutation name: q613h

f157l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: f157l

v367f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.23 lineage
has for lineage: A.23.1 lineage
mutation name: v367f

A.23.1 lineage
type: A.23.1
type: NamedIndividual
label: A.23.1
has for description: International lineage with a number of variants of potential biological concern, including 681R

p681r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.23.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.11 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: p681r

m3752i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.23.1 lineage
mutation name: m3752i

A.24 lineage
type: A.24
type: NamedIndividual
label: A.24
has for description: South Korean lineage

A.25 lineage
type: A.25
type: NamedIndividual
label: A.25
has for description: Ugandan lineage

t1760i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.25 lineage
mutation name: t1760i

A.26 lineage
type: A.26
type: NamedIndividual
label: A.26
has for description: UK lineage

A.27 lineage
type: A.27
type: NamedIndividual
label: A.27
has for description: Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background. pango-designation issue #11.

n3651s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.27 lineage
mutation name: n3651s

h655y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
has for lineage: A.28 lineage
has for lineage: A.29 lineage
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.616 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: h655y

p286l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.27 lineage
mutation name: p286l

n501y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
has for lineage: A.29 lineage
has for lineage: C.1.2 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
has for lineage: P.3 lineage
has for lineage: AP.1 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.351 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: n501y

v50a
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.27 lineage
mutation name: v50a

d2980g
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.27 lineage
mutation name: d2980g

g1219v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
mutation name: g1219v

a653v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
has for lineage: BF.7.13.2 lineage
mutation name: a653v

d796y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
has for lineage: C.38 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: d796y

del119/120
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: A.27 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: del119/120

l18f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.27 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: l18f

del257/259
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.27 lineage
mutation name: del257/259

del63/62
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: A.27 lineage
mutation name: del63/62

A.28 lineage
type: A.28
type: NamedIndividual
label: A.28
has for description: This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop). pango-designation issue #12

a975v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.28 lineage
mutation name: a975v

d1183y
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.28 lineage
has for lineage: B.1.429 lineage
mutation name: d1183y

n501t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.28 lineage
has for lineage: C.2.1 lineage
has for lineage: P.5 lineage
mutation name: n501t

a3529t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.28 lineage
mutation name: a3529t

a35v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.28 lineage
mutation name: a35v

s171l
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: A.28 lineage
has for lineage: D.4 lineage
has for lineage: D.5 lineage
has for lineage: N.5 lineage
has for lineage: B.1.351 lineage
mutation name: s171l

v86f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.28 lineage
has for lineage: A.29 lineage
mutation name: v86f

del69/70
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.28 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: P.1.10.1 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XAS lineage
mutation name: del69/70

A.29 lineage
type: A.29
type: NamedIndividual
label: A.29
has for description: Lineage circulating in multiple countries from pango-designation issue #78

i82s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: A.29 lineage
mutation name: i82s

d22y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: A.29 lineage
mutation name: d22y

f565l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.29 lineage
mutation name: f565l

a3209v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.29 lineage
has for lineage: C.40 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.5 lineage
has for lineage: XBC lineage
has for lineage: XBC.1 lineage
has for lineage: XBC.2 lineage
mutation name: a3209v

i1987v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.29 lineage
mutation name: i1987v

y449h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.29 lineage
has for lineage: C.1.2 lineage
mutation name: y449h

del141/141
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.29 lineage
mutation name: del141/141

del144/144
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.29 lineage
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: C.39 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: CK.1 lineage
has for lineage: B.1.616 lineage
mutation name: del144/144

v71l
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: A.29 lineage
mutation name: v71l

m1499i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.29 lineage
mutation name: m1499i

A.30 lineage
type: A.30
type: NamedIndividual
label: A.30
has for description: Lineage in several countries, associated with travel from Tanzania, from pango-designation issue #138

r246m
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: r246m

i82t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.38 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: i82t

a3837v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: a3837v

d1639e
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: d1639e

e102k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: e102k

e452g
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: e452g

n2370k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: n2370k

p1213l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: p1213l

t2283i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
has for lineage: C.39 lineage
mutation name: t2283i

f1422l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.30 lineage
mutation name: f1422l

t730i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.30 lineage
has for lineage: Q.5 lineage
mutation name: t730i

v1814f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.30 lineage
mutation name: v1814f

d215g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: B.1.351 lineage
has for lineage: B.1.616 lineage
mutation name: d215g

d80y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: d80y

del210/210
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: del210/210

del247/249
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: del247/249

e484k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
has for lineage: C.1.2 lineage
has for lineage: C.38 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
has for lineage: P.2 lineage
has for lineage: P.3 lineage
has for lineage: N.9 lineage
has for lineage: N.10 lineage
has for lineage: R.1 lineage
has for lineage: B.1.351 lineage
mutation name: e484k

p681h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.3 lineage
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: p681h

q957h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: q957h

r346k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
has for lineage: BA.1.1 lineage
mutation name: r346k

t478r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
mutation name: t478r

a540v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: A.30 lineage
mutation name: a540v

v1279f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.30 lineage
mutation name: v1279f

v2536f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: A.30 lineage
mutation name: v2536f

w258l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: A.30 lineage
has for lineage: AY.1 lineage
mutation name: w258l

B lineage
type: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#B
type: NamedIndividual
label: B
has for description: One of the two original haplotypes of the pandemic(and first to be discovered)

B.1 lineage
type: B.1
type: NamedIndividual
label: B.1
has for description: A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020.

s84l
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1 lineage
has for lineage: B.1.1 lineage
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
has for lineage: B.1.1.3 lineage
has for lineage: B.1.1.4 lineage
has for lineage: B.1.1.5 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: B.1.1.8 lineage
has for lineage: B.1.1.10 lineage
has for lineage: L.1 lineage
has for lineage: L.2 lineage
has for lineage: L.3 lineage
has for lineage: L.4 lineage
has for lineage: B.1.1.12 lineage
has for lineage: B.1.1.13 lineage
has for lineage: B.1.1.14 lineage
has for lineage: B.1.1.15 lineage
has for lineage: B.1.1.16 lineage
has for lineage: B.1.1.17 lineage
has for lineage: B.1.1.25 lineage
has for lineage: D.2 lineage
has for lineage: D.3 lineage
has for lineage: D.4 lineage

p314l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1 lineage
has for lineage: B.1.1 lineage
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
has for lineage: B.1.1.3 lineage
has for lineage: B.1.1.4 lineage
has for lineage: B.1.1.5 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: B.1.1.8 lineage
has for lineage: B.1.1.10 lineage
has for lineage: L.1 lineage
has for lineage: L.2 lineage
has for lineage: L.3 lineage
has for lineage: L.4 lineage
has for lineage: B.1.1.12 lineage
has for lineage: B.1.1.13 lineage
has for lineage: B.1.1.14 lineage
has for lineage: B.1.1.15 lineage
has for lineage: B.1.1.16 lineage
has for lineage: B.1.1.17 lineage
has for lineage: B.1.1.25 lineage
has for lineage: D.2 lineage
has for lineage: D.3 lineage
has for lineage: D.4 lineage

B.1.1 lineage
type: B.1.1
type: NamedIndividual
label: B.1.1
has for description: European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`

r203k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1 lineage
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
has for lineage: B.1.1.3 lineage
has for lineage: B.1.1.4 lineage
has for lineage: B.1.1.5 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: B.1.1.8 lineage
has for lineage: B.1.1.10 lineage
has for lineage: L.1 lineage
has for lineage: L.2 lineage
has for lineage: L.3 lineage
has for lineage: L.4 lineage
has for lineage: B.1.1.12 lineage
has for lineage: B.1.1.13 lineage
has for lineage: B.1.1.14 lineage
has for lineage: B.1.1.15 lineage
has for lineage: B.1.1.16 lineage
has for lineage: B.1.1.17 lineage
has for lineage: B.1.1.25 lineage
has for lineage: D.2 lineage
has for lineage: D.3 lineage
has for lineage: D.4 lineage
has for lineage: D.5 lineage

g204r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1 lineage
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
has for lineage: B.1.1.3 lineage
has for lineage: B.1.1.4 lineage
has for lineage: B.1.1.5 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.8 lineage
has for lineage: B.1.1.8 lineage
has for lineage: B.1.1.10 lineage
has for lineage: L.1 lineage
has for lineage: L.2 lineage
has for lineage: L.3 lineage
has for lineage: L.4 lineage
has for lineage: B.1.1.12 lineage
has for lineage: B.1.1.13 lineage
has for lineage: B.1.1.14 lineage
has for lineage: B.1.1.15 lineage
has for lineage: B.1.1.16 lineage
has for lineage: B.1.1.17 lineage
has for lineage: B.1.1.25 lineage
has for lineage: D.2 lineage
has for lineage: D.3 lineage
has for lineage: D.4 lineage
has for lineage: D.5 lineage
has for lineage: B.1.1.26 lineage
has for lineage: B.1.1.27 lineage

B.1.1.1 lineage
type: B.1.1.1
type: NamedIndividual
label: B.1.1.1
has for description: England

t1246i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: C.40 lineage
mutation name: t1246i

g3278s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.1 lineage
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
has for lineage: C.3 lineage
has for lineage: C.4 lineage
has for lineage: C.6 lineage
has for lineage: C.7 lineage
has for lineage: C.8 lineage
has for lineage: C.9 lineage
has for lineage: C.10 lineage
has for lineage: C.11 lineage
has for lineage: C.12 lineage
has for lineage: C.13 lineage
has for lineage: C.14 lineage
has for lineage: C.16 lineage
has for lineage: C.17 lineage
has for lineage: C.18 lineage
has for lineage: C.19 lineage
has for lineage: C.20 lineage
has for lineage: C.21 lineage
has for lineage: C.22 lineage
has for lineage: C.23 lineage
has for lineage: C.25 lineage
has for lineage: C.26 lineage
has for lineage: C.27 lineage
has for lineage: C.28 lineage
has for lineage: C.29 lineage
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
has for lineage: C.32 lineage
has for lineage: C.33 lineage
has for lineage: C.34 lineage
has for lineage: C.35 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.38 lineage
has for lineage: C.40 lineage
mutation name: g3278s

C.1 lineage
type: C.1
type: NamedIndividual
label: C.1
has for description: Alias of B.1.1.1.1, South Africa
has for alias: B.1.1.1.1

q384h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.1 lineage
has for lineage: C.1.1 lineage
has for lineage: C.1.2 lineage
mutation name: q384h

C.1.1 lineage
type: C.1.1
type: NamedIndividual
label: C.1.1
has for description: Alias of B.1.1.1.1.1, Mozambique
has for alias: B.1.1.1.1.1

r52k
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.1.1 lineage
mutation name: r52k

C.1.2 lineage
type: C.1.2
type: NamedIndividual
label: C.1.2
has for description: Alias of B.1.1.1.1.2, mostly South Africa, from pango-designation issue #139
has for alias: B.1.1.1.1.2

t716i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: t716i

t859n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.40 lineage
mutation name: t859n

r190s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: r190s

del3675/3677
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.1.2 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.351 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: del3675/3677

p9l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: C.38 lineage
has for lineage: C.39 lineage
has for lineage: N.10 lineage
mutation name: p9l

l21i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: C.1.2 lineage
mutation name: l21i

c136f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
mutation name: c136f

n679k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.12.1 lineage
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: n679k

del243/244
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.1.2 lineage
has for lineage: XBC lineage
has for lineage: XBC.1 lineage
has for lineage: XBC.2 lineage
mutation name: del243/244

del255/256
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.1.2 lineage
mutation name: del255/256

C.2 lineage
type: C.2
type: NamedIndividual
label: C.2
has for description: Alias of B.1.1.1.2, South Africa and some European
has for alias: B.1.1.1.2

a1609s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
mutation name: a1609s

l293s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.2 lineage
has for lineage: C.2.1 lineage
mutation name: l293s

C.2.1 lineage
type: C.2.1
type: NamedIndividual
label: C.2.1
has for description: Alias of B.1.1.1.2.1, Aruba and Curacao
has for alias: B.1.1.1.2.1

h78y
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.2.1 lineage
has for lineage: BA.2.9 lineage
mutation name: h78y

q29*
type: SNP
type: NamedIndividual
has for gene: orf10
has for lineage: C.2.1 lineage
mutation name: q29*

m657t
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.2.1 lineage
mutation name: m657t

C.3 lineage
type: C.3
type: NamedIndividual
label: C.3
has for description: Alias of B.1.1.1.3, England
has for alias: B.1.1.1.3

g728c
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.3 lineage
mutation name: g728c

v213l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.3 lineage
mutation name: v213l

C.4 lineage
type: C.4
type: NamedIndividual
label: C.4
has for description: Alias of B.1.1.1.4, Peruvian
has for alias: B.1.1.1.4

a1078s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.4 lineage
has for lineage: B.1.1.56 lineage
mutation name: a1078s

C.5 lineage
type: C.5
type: NamedIndividual
label: C.5
has for description: Alias of B.1.1.1.5, Switzerland and Luxembourg
has for alias: B.1.1.1.5

C.6 lineage
type: C.6
type: NamedIndividual
label: C.6
has for description: Alias of B.1.1.1.6, South Africa
has for alias: B.1.1.1.6

C.7 lineage
type: C.7
type: NamedIndividual
label: C.7
has for description: Alias of B.1.1.1.7, Denmark
has for alias: B.1.1.1.7

d27y
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.7 lineage
mutation name: d27y

C.8 lineage
type: C.8
type: NamedIndividual
label: C.8
has for description: Alias of B.1.1.1.8, Canada and DRC
has for alias: B.1.1.1.8

l3606f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.8 lineage
has for lineage: C.22 lineage
has for lineage: C.34 lineage
has for lineage: B.1.616 lineage
mutation name: l3606f

C.9 lineage
type: C.9
type: NamedIndividual
label: C.9
has for description: Alias of B.1.1.1.9, South Africa
has for alias: B.1.1.1.9

C.10 lineage
type: C.10
type: NamedIndividual
label: C.10
has for description: Alias of B.1.1.1.10, Poland
has for alias: B.1.1.1.10

k2143r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.10 lineage
mutation name: k2143r

C.11 lineage
type: C.11
type: NamedIndividual
label: C.11
has for description: Alias of B.1.1.1.11
has for alias: B.1.1.1.11

s2f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.11 lineage
mutation name: s2f

t1250i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.11 lineage
mutation name: t1250i

t307i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.11 lineage
mutation name: t307i

C.12 lineage
type: C.12
type: NamedIndividual
label: C.12
has for description: Alias of B.1.1.1.12, New Zealand
has for alias: B.1.1.1.12

C.13 lineage
type: C.13
type: NamedIndividual
label: C.13
has for description: Alias of B.1.1.1.13, Peruvian
has for alias: B.1.1.1.13

q2555r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.13 lineage
mutation name: q2555r

C.14 lineage
type: C.14
type: NamedIndividual
label: C.14
has for description: Alias of B.1.1.1.14, Peruvian
has for alias: B.1.1.1.14

C.16 lineage
type: C.16
type: NamedIndividual
label: C.16
has for description: Alias of B.1.1.1.16, Portugal originally, now pan-european
has for alias: B.1.1.1.16

a3143v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.16 lineage
has for lineage: P.4 lineage
mutation name: a3143v

e1013k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.16 lineage
mutation name: e1013k

t4175i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.16 lineage
mutation name: t4175i

C.17 lineage
type: C.17
type: NamedIndividual
label: C.17
has for description: Alias of B.1.1.1.17, Egypt
has for alias: B.1.1.1.17

g212v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.17 lineage
has for lineage: C.36 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: g212v

q677h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.17 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: P.6 lineage
has for lineage: DL.1 lineage
has for lineage: AY.34 lineage
mutation name: q677h

t4090i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.17 lineage
has for lineage: C.36.1 lineage
has for lineage: C.36.2 lineage
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: t4090i

C.18 lineage
type: C.18
type: NamedIndividual
label: C.18
has for description: Alias of B.1.1.1.18, Italy
has for alias: B.1.1.1.18

s2563a
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.18 lineage
has for lineage: C.19 lineage
mutation name: s2563a

C.19 lineage
type: C.19
type: NamedIndividual
label: C.19
has for description: Alias of B.1.1.1.19, Denmark
has for alias: B.1.1.1.19

q7k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.19 lineage
mutation name: q7k

e1205k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.19 lineage
mutation name: e1205k

i71t
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.19 lineage
mutation name: i71t

d253g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.19 lineage
has for lineage: XAY.1 lineage
mutation name: d253g

t654a
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.19 lineage
mutation name: t654a

C.20 lineage
type: C.20
type: NamedIndividual
label: C.20
has for description: Alias of B.1.1.1.20, Switzerland
has for alias: B.1.1.1.20

C.21 lineage
type: C.21
type: NamedIndividual
label: C.21
has for description: Alias of B.1.1.1.21, Spain
has for alias: B.1.1.1.21

t1597i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.21 lineage
mutation name: t1597i

C.22 lineage
type: C.22
type: NamedIndividual
label: C.22
has for description: Alias of B.1.1.1.22, Argentina
has for alias: B.1.1.1.22

v90f
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.22 lineage
mutation name: v90f

C.23 lineage
type: C.23
type: NamedIndividual
label: C.23
has for description: Alias of B.1.1.1.23, Mainly USA
has for alias: B.1.1.1.23

k1305n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.23 lineage
has for lineage: B.1.1.51 lineage
mutation name: k1305n

del447/448
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.23 lineage
mutation name: del447/448

C.25 lineage
type: C.25
type: NamedIndividual
label: C.25
has for description: Alias of B.1.1.1.25, Peru
has for alias: B.1.1.1.25

C.26 lineage
type: C.26
type: NamedIndividual
label: C.26
has for description: Alias of B.1.1.1.26, Chile
has for alias: B.1.1.1.26

C.27 lineage
type: C.27
type: NamedIndividual
label: C.27
has for description: Alias of B.1.1.1.27, England
has for alias: B.1.1.1.27

i186v
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.27 lineage
mutation name: i186v

C.28 lineage
type: C.28
type: NamedIndividual
label: C.28
has for description: Alias of B.1.1.1.28, USA
has for alias: B.1.1.1.28

q27*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.28 lineage
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: q27*

C.29 lineage
type: C.29
type: NamedIndividual
label: C.29
has for description: Alias of B.1.1.1.29, Chile
has for alias: B.1.1.1.29

f3l
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.29 lineage
mutation name: f3l

p2313l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.29 lineage
mutation name: p2313l

C.30 lineage
type: C.30
type: NamedIndividual
label: C.30
has for description: Alias of B.1.1.1.30, England
has for alias: B.1.1.1.30

e913d
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
mutation name: e913d

k1073n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
has for lineage: C.31 lineage
mutation name: k1073n

t1542i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
mutation name: t1542i

s255f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.30 lineage
has for lineage: C.30.1 lineage
mutation name: s255f

C.30.1 lineage
type: C.30.1
type: NamedIndividual
label: C.30.1
has for description: Alias of B.1.1.1.30.1, Denmark
has for alias: B.1.1.1.30.1

C.31 lineage
type: C.31
type: NamedIndividual
label: C.31
has for description: Alias of B.1.1.1.31, USA
has for alias: B.1.1.1.31

d3y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.31 lineage
mutation name: d3y

r2652s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.31 lineage
mutation name: r2652s

l2213f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.31 lineage
mutation name: l2213f

p970l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.31 lineage
mutation name: p970l

t223n
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.31 lineage
mutation name: t223n

s98f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.31 lineage
mutation name: s98f

C.32 lineage
type: C.32
type: NamedIndividual
label: C.32
has for description: Alias of B.1.1.1.32, Peru
has for alias: B.1.1.1.32

C.33 lineage
type: C.33
type: NamedIndividual
label: C.33
has for description: Alias of B.1.1.1.33, Peru
has for alias: B.1.1.1.33

C.34 lineage
type: C.34
type: NamedIndividual
label: C.34
has for description: Alias of B.1.1.1.34, Canada
has for alias: B.1.1.1.34

C.35 lineage
type: C.35
type: NamedIndividual
label: C.35
has for description: Alias of B.1.1.1.35, Central Europe, England
has for alias: B.1.1.1.35

v2089f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.35 lineage
mutation name: v2089f

k1895n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.35 lineage
mutation name: k1895n

C.36 lineage
type: C.36
type: NamedIndividual
label: C.36
has for description: Alias of B.1.1.1.36, Egypt mainly and other countries
has for alias: B.1.1.1.36

C.36.1 lineage
type: C.36.1
type: NamedIndividual
label: C.36.1
has for description: Alias of B.1.1.1.36.1, Canada
has for alias: B.1.1.1.36.1

y3723c
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.1 lineage
mutation name: y3723c

l1681f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.36.1 lineage
has for lineage: B.1.616 lineage
mutation name: l1681f

n641s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.1 lineage
mutation name: n641s

s67f
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.36.1 lineage
has for lineage: BR.2 lineage
mutation name: s67f

C.36.2 lineage
type: C.36.2
type: NamedIndividual
label: C.36.2
has for description: Alias of B.1.1.1.36.2, Switzerland
has for alias: B.1.1.1.36.2

m1378i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.2 lineage
has for lineage: L.3 lineage
mutation name: m1378i

q1009r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.2 lineage
mutation name: q1009r

t551i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.2 lineage
mutation name: t551i

C.36.3 lineage
type: C.36.3
type: NamedIndividual
label: C.36.3
has for description: Alias of B.1.1.1.36.3, Europe and USA lineage, from pango-designation issue #80
has for alias: B.1.1.1.36.3

a899s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: a899s

d3222n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: d3222n

d2980n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: P.3 lineage
mutation name: d2980n

l3691s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: l3691s

r346s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: AQ.2 lineage
mutation name: r346s

d1028y
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: d1028y

s3687l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: s3687l

w152r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: w152r

p2287s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: P.7 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: p2287s

a43s
type: SNP
type: NamedIndividual
has for gene: orf7b
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: a43s

a859v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: P.1.10.1 lineage
mutation name: a859v

s12f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
has for lineage: B.1.1.63 lineage
mutation name: s12f

d1639n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.36.3 lineage
has for lineage: C.36.3.1 lineage
mutation name: d1639n

C.36.3.1 lineage
type: C.36.3.1
type: NamedIndividual
label: C.36.3.1
has for description: Alias of B.1.1.1.36.3.1, Europe and USA lineage, from pango-designation issue #80
has for alias: B.1.1.1.36.3.1

p1452l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.36.3.1 lineage
mutation name: p1452l

k256r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.36.3.1 lineage
mutation name: k256r

y113h
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.36.3.1 lineage
mutation name: y113h

a845s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.36.3.1 lineage
mutation name: a845s

C.37 lineage
type: C.37
type: NamedIndividual
label: C.37
has for description: Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from pango-designation issue #52
has for alias: B.1.1.1.37

r246n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
mutation name: r246n

l3201p
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.39 lineage
has for lineage: P.3 lineage
has for lineage: P.4 lineage
mutation name: l3201p

f2387v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
mutation name: f2387v

g214c
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
mutation name: g214c

l452q
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: C.39 lineage
mutation name: l452q

f490s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
has for lineage: Q.5 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: f490s

t76i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
mutation name: t76i

g75v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
mutation name: g75v

del247/253
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.37 lineage
has for lineage: C.37.1 lineage
mutation name: del247/253

C.37.1 lineage
type: C.37.1
type: NamedIndividual
label: C.37.1
has for description: Alias of B.1.1.1.37.1, lineage outside of South America, from pango-designation issue #158
has for alias: B.1.1.1.37.1

i123t
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.37.1 lineage
mutation name: i123t

C.38 lineage
type: C.38
type: NamedIndividual
label: C.38
has for description: Alias of B.1.1.1.38, lineage in multiple countries, from pango-designation issue #150, formally B.1.1.527
has for alias: B.1.1.1.38

e378q
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.38 lineage
mutation name: e378q

t11k
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: C.38 lineage
mutation name: t11k

r2115i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
mutation name: r2115i

a211v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.38 lineage
mutation name: a211v

e2946d
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
mutation name: e2946d

k1348q
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
mutation name: k1348q

t3646a
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: t3646a

a2132v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.38 lineage
mutation name: a2132v

h1500y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
has for lineage: C.39 lineage
mutation name: h1500y

w64r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.38 lineage
mutation name: w64r

g2207c
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.38 lineage
mutation name: g2207c

del138/144
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.38 lineage
mutation name: del138/144

C.39 lineage
type: C.39
type: NamedIndividual
label: C.39
has for description: Alias of B.1.1.1.39, Chile and Peru lineage
has for alias: B.1.1.1.39

i157v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.39 lineage
mutation name: i157v

t2154i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.39 lineage
mutation name: t2154i

s216p
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.39 lineage
mutation name: s216p

p479s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.39 lineage
mutation name: p479s

l3694f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.39 lineage
mutation name: l3694f

n2361k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.39 lineage
mutation name: n2361k

a576d
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.39 lineage
mutation name: a576d

r190k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.39 lineage
mutation name: r190k

a41v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: C.39 lineage
mutation name: a41v

y145c
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.39 lineage
mutation name: y145c

a373v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: C.39 lineage
mutation name: a373v

C.40 lineage
type: C.40
type: NamedIndividual
label: C.40
has for description: Alias of B.1.1.1.40, Peru lineage, from pango-designation issue #203
has for alias: B.1.1.1.40

k3573e
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.40 lineage
mutation name: k3573e

s610l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.40 lineage
has for lineage: D.4 lineage
has for lineage: B.1.1.34 lineage
mutation name: s610l

g215v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: C.40 lineage
has for lineage: P.5 lineage
mutation name: g215v

s640f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.40 lineage
mutation name: s640f

d935g
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: C.40 lineage
mutation name: d935g

d215h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: C.40 lineage
has for lineage: XBC lineage
has for lineage: XBC.1 lineage
has for lineage: XBC.2 lineage
mutation name: d215h

del257/257
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: C.40 lineage
mutation name: del257/257

B.1.1.3 lineage
type: B.1.1.3
type: NamedIndividual
label: B.1.1.3
has for description: England Lineage

a3333t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.3 lineage
mutation name: a3333t

t478i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.3 lineage
mutation name: t478i

B.1.1.4 lineage
type: B.1.1.4
type: NamedIndividual
label: B.1.1.4
has for description: English lineage

t1774i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.4 lineage
mutation name: t1774i

i4049v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.4 lineage
mutation name: i4049v

p104l
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.4 lineage
mutation name: p104l

B.1.1.5 lineage
type: B.1.1.5
type: NamedIndividual
label: B.1.1.5
has for description: European lineage

B.1.1.7 lineage
type: B.1.1.7
type: NamedIndividual
label: B.1.1.7
has for description: UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html

d3l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: d3l

t1001i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: t1001i

a570d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: a570d

d1118h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: d1118h

a1708d
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: a1708d

y73c
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: y73c

s982a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: s982a

s235f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: s235f

r52i
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: r52i

i2230t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.7 lineage
has for lineage: Q.1 lineage
has for lineage: Q.2 lineage
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
has for lineage: Q.5 lineage
has for lineage: Q.6 lineage
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: i2230t

Q.1 lineage
type: Q.1
type: NamedIndividual
label: Q.1
has for description: Alias of B.1.1.7.1, predominantly Lithuania lineage, from pango-designation issue #39
has for alias: B.1.1.7.1

Q.2 lineage
type: Q.2
type: NamedIndividual
label: Q.2
has for description: Alias of B.1.1.7.2, Italy lineage, from pango-designation issue #79
has for alias: B.1.1.7.2

y496c
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.2 lineage
mutation name: y496c

t2124i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.2 lineage
mutation name: t2124i

h112y
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: Q.2 lineage
mutation name: h112y

t120i
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: Q.2 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: t120i

Q.3 lineage
type: Q.3
type: NamedIndividual
label: Q.3
has for description: Alias of B.1.1.7.3, USA lineage, from pango-designation issue #92
has for alias: B.1.1.7.3

v70l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: Q.3 lineage
mutation name: v70l

k1383r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: Q.3 lineage
has for lineage: Q.4 lineage
mutation name: k1383r

d2499n
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: Q.3 lineage
mutation name: d2499n

m1586i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.3 lineage
mutation name: m1586i

Q.4 lineage
type: Q.4
type: NamedIndividual
label: Q.4
has for description: Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from pango-designation issue #176
has for alias: B.1.1.7.4

q3966r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.4 lineage
mutation name: q3966r

t1567a
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.4 lineage
mutation name: t1567a

Q.5 lineage
type: Q.5
type: NamedIndividual
label: Q.5
has for description: Alias of B.1.1.7.5, Israel lineage, from pango-designation issue #165
has for alias: B.1.1.7.5

l331f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.5 lineage
mutation name: l331f

q281k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.5 lineage
mutation name: q281k

t135i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.5 lineage
mutation name: t135i

d138h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: Q.5 lineage
mutation name: d138h

l730f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.5 lineage
mutation name: l730f

a119s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.5 lineage
has for lineage: P.2 lineage
has for lineage: B.1.1.49 lineage
mutation name: a119s

Q.6 lineage
type: Q.6
type: NamedIndividual
label: Q.6
has for description: Alias of B.1.1.7.6, France lineage, from pango-designation issue #183
has for alias: B.1.1.7.6

h300y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.6 lineage
mutation name: h300y

Q.7 lineage
type: Q.7
type: NamedIndividual
label: Q.7
has for description: Alias of B.1.1.7.7, predominantly France lineage, from pango-designation issue #183
has for alias: B.1.1.7.7

g204p
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: Q.7 lineage
mutation name: g204p

k68*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: Q.7 lineage
has for lineage: Q.8 lineage
mutation name: k68*

e2268d
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.7 lineage
mutation name: e2268d

Q.8 lineage
type: Q.8
type: NamedIndividual
label: Q.8
has for description: Alias of B.1.1.7.8, Sri Lanka lineage, from pango-designation issue #197
has for alias: B.1.1.7.8

e194d
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: Q.8 lineage
mutation name: e194d

t4087i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: Q.8 lineage
mutation name: t4087i

B.1.1.8 lineage
type: B.1.1.8
type: NamedIndividual
label: B.1.1.8
has for description: England

l46f
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.8 lineage
mutation name: l46f

B.1.1.10 lineage
type: B.1.1.10
type: NamedIndividual
label: B.1.1.10
has for description: European lineage

L.1 lineage
type: L.1
type: NamedIndividual
label: L.1
has for description: Alias of B.1.1.10.1, Canadian lineage
has for alias: B.1.1.10.1

m1237t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: L.1 lineage
mutation name: m1237t

n3985h
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.1 lineage
mutation name: n3985h

del2055/2075
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.1 lineage
mutation name: del2055/2075

p2221s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.1 lineage
mutation name: p2221s

p2046l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.1 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: p2046l

L.2 lineage
type: L.2
type: NamedIndividual
label: L.2
has for description: Alias of B.1.1.10.2, Netherlands lineage
has for alias: B.1.1.10.2

L.3 lineage
type: L.3
type: NamedIndividual
label: L.3
has for description: Alias of B.1.1.10.3, Nigerian/ European lineage with long branch from B.1.1.10
has for alias: B.1.1.10.3

y1155f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: L.3 lineage
mutation name: y1155f

p2739l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.3 lineage
mutation name: p2739l

v1228l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: L.3 lineage
mutation name: v1228l

l446f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.3 lineage
mutation name: l446f

p3767l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.3 lineage
mutation name: p3767l

y3063s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.3 lineage
mutation name: y3063s

L.4 lineage
type: L.4
type: NamedIndividual
label: L.4
has for description: USA lineage, alias of B.1.1.10.4
has for alias: B.1.1.10.4

s1881g
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: L.4 lineage
mutation name: s1881g

v1104l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: L.4 lineage
mutation name: v1104l

a2199v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: L.4 lineage
mutation name: a2199v

B.1.1.12 lineage
type: B.1.1.12
type: NamedIndividual
label: B.1.1.12
has for description: England

B.1.1.13 lineage
type: B.1.1.13
type: NamedIndividual
label: B.1.1.13
has for description: UK

B.1.1.14 lineage
type: B.1.1.14
type: NamedIndividual
label: B.1.1.14
has for description: Scotland

s279f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.14 lineage
mutation name: s279f

k136e
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.14 lineage
mutation name: k136e

B.1.1.15 lineage
type: B.1.1.15
type: NamedIndividual
label: B.1.1.15
has for description: UK/ Luxembourg lineage

t999i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.15 lineage
has for lineage: B.1.1.198 lineage
mutation name: t999i

e2274a
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.15 lineage
mutation name: e2274a

r68l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.15 lineage
mutation name: r68l

p1786s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.15 lineage
mutation name: p1786s

g3072c
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.15 lineage
mutation name: g3072c

B.1.1.16 lineage
type: B.1.1.16
type: NamedIndividual
label: B.1.1.16
has for description: Wales with European base

a892s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.16 lineage
mutation name: a892s

g100c
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.16 lineage
mutation name: g100c

t73i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.16 lineage
mutation name: t73i

B.1.1.17 lineage
type: B.1.1.17
type: NamedIndividual
label: B.1.1.17
has for description: Icelandic

t175m
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: B.1.1.17 lineage
mutation name: t175m

y189c
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.17 lineage
mutation name: y189c

a831v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.17 lineage
mutation name: a831v

B.1.1.25 lineage
type: B.1.1.25
type: NamedIndividual
label: B.1.1.25
has for description: Bangladesh Lineage

i300f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.25 lineage
has for lineage: D.2 lineage
has for lineage: D.3 lineage
has for lineage: D.4 lineage
has for lineage: D.5 lineage
mutation name: i300f

D.2 lineage
type: D.2
type: NamedIndividual
label: D.2
has for description: Alias of B.1.1.25.2, Australia
has for alias: B.1.1.25.2

D.3 lineage
type: D.3
type: NamedIndividual
label: D.3
has for description: Alias of B.1.1.25.3, Australia
has for alias: B.1.1.25.3

k2511n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: D.3 lineage
mutation name: k2511n

D.4 lineage
type: D.4
type: NamedIndividual
label: D.4
has for description: Alias of B.1.1.25.4, Irish/ Northern Irish lineage
has for alias: B.1.1.25.4

m210i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: D.4 lineage
mutation name: m210i

l1099f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: D.4 lineage
mutation name: l1099f

r2257s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: D.4 lineage
has for lineage: D.5 lineage
mutation name: r2257s

D.5 lineage
type: D.5
type: NamedIndividual
label: D.5
has for description: Alias of B.1.1.25.5, Swedish/ Denmark lineage
has for alias: B.1.1.25.5

t1055i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: D.5 lineage
mutation name: t1055i

B.1.1.26 lineage
type: B.1.1.26
type: NamedIndividual
label: B.1.1.26
has for description: USA Lineage

v1116i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.26 lineage
mutation name: v1116i

B.1.1.27 lineage
type: B.1.1.27
type: NamedIndividual
label: B.1.1.27
has for description: Oman Lineage, some UAE

g3334s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.27 lineage
has for lineage: AP.1 lineage
mutation name: g3334s

B.1.1.28 lineage
type: B.1.1.28
type: NamedIndividual
label: B.1.1.28
has for description: Brazil mostly, absorbed B.1.1.94 and B.1.1.143

v1176f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.28 lineage
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
has for lineage: P.2 lineage
has for lineage: P.3 lineage
has for lineage: P.4 lineage
has for lineage: P.5 lineage
has for lineage: P.6 lineage
has for lineage: P.7 lineage
mutation name: v1176f

P.1 lineage
type: P.1
type: NamedIndividual
label: P.1
has for description: Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586.
has for alias: B.1.1.28.1

P.1.1 lineage
type: P.1.1
type: NamedIndividual
label: P.1.1
has for description: Alias of B.1.1.28.1.1, European lineage in Italy and Germany
has for alias: B.1.1.28.1.1

k1795q
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: k1795q

p80r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: p80r

e1264d
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: e1264d

t1027i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: t1027i

t20n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: t20n

s1188l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: s1188l

d138y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: d138y

p26s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: p26s

k417t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: k417t

s253p
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.1.1 lineage
has for lineage: P.1.2 lineage
has for lineage: P.1.3 lineage
has for lineage: P.1.4 lineage
has for lineage: P.1.5 lineage
has for lineage: P.1.6 lineage
has for lineage: P.1.7 lineage
has for lineage: P.1.7.1 lineage
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: P.1.11 lineage
has for lineage: P.1.12.1 lineage
has for lineage: P.1.13 lineage
has for lineage: P.1.14 lineage
has for lineage: P.1.15 lineage
has for lineage: P.1.16 lineage
has for lineage: P.1.17 lineage
has for lineage: P.1.17.1 lineage
mutation name: s253p

P.1.2 lineage
type: P.1.2
type: NamedIndividual
label: P.1.2
has for description: Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, pango-designation issue #56
has for alias: B.1.1.28.1.2

d155y
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.1.2 lineage
mutation name: d155y

t1820i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.2 lineage
mutation name: t1820i

d762g
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.2 lineage
mutation name: d762g

P.1.3 lineage
type: P.1.3
type: NamedIndividual
label: P.1.3
has for description: Alias of B.1.1.28.1.3, Brazil lineage, from pango-designation issue #141
has for alias: B.1.1.28.1.3

h17y
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: P.1.3 lineage
mutation name: h17y

t1754i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.3 lineage
mutation name: t1754i

P.1.4 lineage
type: P.1.4
type: NamedIndividual
label: P.1.4
has for description: Alias of B.1.1.28.1.4, Brazil lineage, from pango-designation issue #141
has for alias: B.1.1.28.1.4

P.1.5 lineage
type: P.1.5
type: NamedIndividual
label: P.1.5
has for description: Alias of B.1.1.28.1.5, Brazil lineage, from pango-designation issue #141
has for alias: B.1.1.28.1.5

t951i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.5 lineage
mutation name: t951i

P.1.6 lineage
type: P.1.6
type: NamedIndividual
label: P.1.6
has for description: Alias of B.1.1.28.1.6, Brazil lineage, from pango-designation issue #141
has for alias: B.1.1.28.1.6

P.1.7 lineage
type: P.1.7
type: NamedIndividual
label: P.1.7
has for description: Alias of B.1.1.28.1.7, Brazil lineage, from pango-designation issue #141
has for alias: B.1.1.28.1.7

P.1.7.1 lineage
type: P.1.7.1
type: NamedIndividual
label: P.1.7.1
has for description: Alias of B.1.1.28.1.7.1, Peru lineage, from pango-designation issue #326
has for alias: B.1.1.28.1.7.1

t3284i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.7.1 lineage
mutation name: t3284i

P.1.8 lineage
type: P.1.8
type: NamedIndividual
label: P.1.8
has for description: Alias of B.1.1.28.1.8, Brazil lineage, from pango-designation issue #164
has for alias: B.1.1.28.1.8

s216l
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.1.8 lineage
mutation name: s216l

c1235f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.8 lineage
mutation name: c1235f

i1259v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.8 lineage
has for lineage: P.1.9 lineage
mutation name: i1259v

g8*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: P.1.8 lineage
has for lineage: XBB.1 lineage
has for lineage: XBB.1.1 lineage
has for lineage: XBB.1.5 lineage
mutation name: g8*

t470n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.8 lineage
mutation name: t470n

P.1.9 lineage
type: P.1.9
type: NamedIndividual
label: P.1.9
has for description: Alias of B.1.1.28.1.9, Brazil lineage, from pango-designation issue #174
has for alias: B.1.1.28.1.9

q675h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.9 lineage
has for lineage: P.6 lineage
mutation name: q675h

P.1.10 lineage
type: P.1.10
type: NamedIndividual
label: P.1.10
has for description: Alias of B.1.1.28.1.10, predominantly USA lineage, from pango-designation issue #179
has for alias: B.1.1.28.1.10

h388y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
has for lineage: BF.7.13.2 lineage
mutation name: h388y

t4355i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.10 lineage
has for lineage: P.1.10.1 lineage
has for lineage: P.1.10.2 lineage
mutation name: t4355i

P.1.10.1 lineage
type: P.1.10.1
type: NamedIndividual
label: P.1.10.1
has for description: Alias of B.1.1.28.1.10.1, Aruba lineage, from pango-designation issue #179
has for alias: B.1.1.28.1.10.1

P.1.10.2 lineage
type: P.1.10.2
type: NamedIndividual
label: P.1.10.2
has for description: Alias of B.1.1.28.1.10.2, Mexico lineage, from pango-designation issue #179
has for alias: B.1.1.28.1.10.2

p1862l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.10.2 lineage
mutation name: p1862l

P.1.11 lineage
type: P.1.11
type: NamedIndividual
label: P.1.11
has for description: Alias of B.1.1.28.1.11, Brazil lineage, from pango-designation issue #164
has for alias: B.1.1.28.1.11

P.1.12 lineage
type: P.1.12
type: NamedIndividual
label: P.1.12
has for description: Alias of B.1.1.28.1.12, predominantly Peru lineage, from pango-designation issue #212
has for alias: B.1.1.28.1.12

P.1.12.1 lineage
type: P.1.12.1
type: NamedIndividual
label: P.1.12.1
has for description: Sublineage of P.1.12 reported predominantly from Peru and US (from pango-designation issue #282)
has for alias: B.1.1.28.1.12.1

f120v
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: P.1.12.1 lineage
mutation name: f120v

r246g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.12.1 lineage
mutation name: r246g

t151i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.1.12.1 lineage
has for lineage: P.7 lineage
mutation name: t151i

t284i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.12.1 lineage
mutation name: t284i

P.1.13 lineage
type: P.1.13
type: NamedIndividual
label: P.1.13
has for description: Alias of B.1.1.28.1.13, USA lineage, from pango-designation issue #231
has for alias: B.1.1.28.1.13

v3449f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.13 lineage
mutation name: v3449f

P.1.14 lineage
type: P.1.14
type: NamedIndividual
label: P.1.14
has for description: Alias of B.1.1.28.1.14, predominantly Canada lineage, from pango-designation issue #231
has for alias: B.1.1.28.1.14

s2947n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.14 lineage
mutation name: s2947n

P.1.15 lineage
type: P.1.15
type: NamedIndividual
label: P.1.15
has for description: Alias of B.1.1.28.1.15, predominantly Chile lineage, from pango-designation issue #231
has for alias: B.1.1.28.1.15

P.1.16 lineage
type: P.1.16
type: NamedIndividual
label: P.1.16
has for description: Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from pango-designation issue #231
has for alias: B.1.1.28.1.16

i118m
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.1.16 lineage
mutation name: i118m

P.1.17 lineage
type: P.1.17
type: NamedIndividual
label: P.1.17
has for description: Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from pango-designation issue #231
has for alias: B.1.1.28.1.17

P.1.17.1 lineage
type: P.1.17.1
type: NamedIndividual
label: P.1.17.1
has for description: Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from pango-designation issue #231
has for alias: B.1.1.28.1.17.1

n2147d
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.1.17.1 lineage
mutation name: n2147d

h49y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.1.17.1 lineage
mutation name: h49y

v2178f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.1.17.1 lineage
mutation name: v2178f

P.2 lineage
type: P.2
type: NamedIndividual
label: P.2
has for description: Alias of B.1.1.28.2, Brazilian lineage
has for alias: B.1.1.28.2

l3930f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.2 lineage
has for lineage: P.3 lineage
has for lineage: P.6 lineage
has for lineage: P.7 lineage
mutation name: l3930f

l3468v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.2 lineage
mutation name: l3468v

P.3 lineage
type: P.3
type: NamedIndividual
label: P.3
has for description: Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2
has for alias: B.1.1.28.3

h1101y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.3 lineage
mutation name: h1101y

e1092k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.3 lineage
mutation name: e1092k

k2q
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: P.3 lineage
mutation name: k2q

d1554g
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.3 lineage
mutation name: d1554g

d3681e
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.3 lineage
mutation name: d3681e

s2625f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.3 lineage
mutation name: s2625f

a1291v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.3 lineage
mutation name: a1291v

l1203f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.3 lineage
mutation name: l1203f

P.4 lineage
type: P.4
type: NamedIndividual
label: P.4
has for description: Alias of B.1.1.28.4, Brazil lineage, pango-designation issue #68
has for alias: B.1.1.28.4

a220v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: P.4 lineage
has for lineage: B.1.177 lineage
has for lineage: B.1.177.32 lineage
has for lineage: B.1.177.44 lineage
mutation name: a220v

q3729k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.4 lineage
has for lineage: P.5 lineage
mutation name: q3729k

y822c
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.4 lineage
mutation name: y822c

a516t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.4 lineage
mutation name: a516t

l3915f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.4 lineage
mutation name: l3915f

v50i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.4 lineage
mutation name: v50i

i720v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.4 lineage
mutation name: i720v

q173k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.4 lineage
mutation name: q173k

s704l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.4 lineage
mutation name: s704l

n164k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.4 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: n164k

g142v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.4 lineage
has for lineage: B.1.616 lineage
mutation name: g142v

P.5 lineage
type: P.5
type: NamedIndividual
label: P.5
has for description: Alias of B.1.1.28.5, Brazil lineage, pango-designation issue #86
has for alias: B.1.1.28.5

e484q
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
mutation name: e484q

t95i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
mutation name: t95i

p4337l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.5 lineage
mutation name: p4337l

t1637i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.5 lineage
mutation name: t1637i

f2l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
mutation name: f2l

q14k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
mutation name: q14k

g172c
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.5 lineage
mutation name: g172c

del143/143
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
mutation name: del143/143

y144f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: P.5 lineage
mutation name: y144f

P.6 lineage
type: P.6
type: NamedIndividual
label: P.6
has for description: Alias of B.1.1.28.6, Uruguay lineage, from pango-designation issue #148
has for alias: B.1.1.28.6

v757f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.6 lineage
mutation name: v757f

p271l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.6 lineage
mutation name: p271l

t216a
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.6 lineage
mutation name: t216a

r2613h
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: P.6 lineage
mutation name: r2613h

p2260s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.6 lineage
mutation name: p2260s

m260i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: P.6 lineage
mutation name: m260i

P.7 lineage
type: P.7
type: NamedIndividual
label: P.7
has for description: Alias of B.1.1.28.7, Brazil lineage, from pango-designation issue #29
has for alias: B.1.1.28.7

q3777h
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.7 lineage
mutation name: q3777h

v2588f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.7 lineage
mutation name: v2588f

l3027f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: P.7 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: l3027f

B.1.1.29 lineage
type: B.1.1.29
type: NamedIndividual
label: B.1.1.29
has for description: Wales lineage, formerly temporarily assigned B.1.1.439 due to an error (see designation issue 50)

s37p
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.29 lineage
mutation name: s37p

a656v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.29 lineage
mutation name: a656v

B.1.1.30 lineage
type: B.1.1.30
type: NamedIndividual
label: B.1.1.30
has for description: Lithuanian

s443f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.30 lineage
mutation name: s443f

r21i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.30 lineage
mutation name: r21i

t28i
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: B.1.1.30 lineage
mutation name: t28i

B.1.1.31 lineage
type: B.1.1.31
type: NamedIndividual
label: B.1.1.31
has for description: Russian lineage

B.1.1.33 lineage
type: B.1.1.33
type: NamedIndividual
label: B.1.1.33
has for description: Brazilian

i292t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.33 lineage
has for lineage: N.1 lineage
has for lineage: N.3 lineage
has for lineage: N.4 lineage
has for lineage: N.5 lineage
has for lineage: N.6 lineage
has for lineage: N.7 lineage
has for lineage: N.8 lineage
has for lineage: N.9 lineage
has for lineage: N.10 lineage
mutation name: i292t

i33t
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: B.1.1.33 lineage
has for lineage: N.1 lineage
has for lineage: N.3 lineage
has for lineage: N.4 lineage
has for lineage: N.5 lineage
has for lineage: N.6 lineage
has for lineage: N.7 lineage
has for lineage: N.8 lineage
has for lineage: N.9 lineage
has for lineage: N.10 lineage
has for lineage: BF.7.13.2 lineage
mutation name: i33t

N.1 lineage
type: N.1
type: NamedIndividual
label: N.1
has for description: Alias of B.1.1.33.1, US
has for alias: B.1.1.33.1

t175i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: N.1 lineage
mutation name: t175i

N.2 lineage
type: N.2
type: NamedIndividual
label: N.2
has for description: Alias of B.1.1.33.2, European lineage
has for alias: B.1.1.33.2

N.3 lineage
type: N.3
type: NamedIndividual
label: N.3
has for description: Alias of B.1.1.33.3, Argentinian
has for alias: B.1.1.33.3

v58f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: N.3 lineage
mutation name: v58f

N.4 lineage
type: N.4
type: NamedIndividual
label: N.4
has for description: Alias of B.1.1.33.4, Chilean
has for alias: B.1.1.33.4

k737r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.4 lineage
mutation name: k737r

N.5 lineage
type: N.5
type: NamedIndividual
label: N.5
has for description: Alias of B.1.1.33.5, Argentinian
has for alias: B.1.1.33.5

q414r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.5 lineage
mutation name: q414r

N.6 lineage
type: N.6
type: NamedIndividual
label: N.6
has for description: Alias of B.1.1.33.6, Chilean
has for alias: B.1.1.33.6

N.7 lineage
type: N.7
type: NamedIndividual
label: N.7
has for description: Alias of B.1.1.33.7, Uruguay
has for alias: B.1.1.33.7

p168s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: N.7 lineage
mutation name: p168s

N.8 lineage
type: N.8
type: NamedIndividual
label: N.8
has for description: Alias of B.1.1.33.8, Kenyan
has for alias: B.1.1.33.8

k23n
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: N.8 lineage
mutation name: k23n

del24/30
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: N.8 lineage
mutation name: del24/30

N.9 lineage
type: N.9
type: NamedIndividual
label: N.9
has for description: Alias of B.1.1.33.9, Brazilian lineage
has for alias: B.1.1.33.9

a2529v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.9 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
mutation name: a2529v

f3605l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.9 lineage
mutation name: f3605l

e33a
type: SNP
type: NamedIndividual
has for gene: orf7b
has for lineage: N.9 lineage
mutation name: e33a

a872t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.9 lineage
mutation name: a872t

N.10 lineage
type: N.10
type: NamedIndividual
label: N.10
has for description: Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675
has for alias: B.1.1.33.10

n211i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: n211i

q70r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: N.10 lineage
mutation name: q70r

p1640l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.10 lineage
has for lineage: XBC lineage
has for lineage: XBC.1 lineage
has for lineage: XBC.2 lineage
mutation name: p1640l

p3371s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.10 lineage
mutation name: p3371s

v3718a
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.10 lineage
mutation name: v3718a

v445a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
mutation name: v445a

del256/258
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
mutation name: del256/258

p3395s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: N.10 lineage
mutation name: p3395s

del141/144
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
mutation name: del141/144

i210v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: i210v

del14/14
type: SNP
type: NamedIndividual
has for gene: orf7b
has for lineage: N.10 lineage
mutation name: del14/14

del212/212
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: N.10 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: del212/212

B.1.1.34 lineage
type: B.1.1.34
type: NamedIndividual
label: B.1.1.34
has for description: South African lineage

g1129v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.34 lineage
mutation name: g1129v

B.1.1.37 lineage
type: B.1.1.37
type: NamedIndividual
label: B.1.1.37
has for description: UK lineage

a647s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.37 lineage
mutation name: a647s

B.1.1.38 lineage
type: B.1.1.38
type: NamedIndividual
label: B.1.1.38
has for description: Wales

t265i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.38 lineage
has for lineage: B.1.351 lineage
has for lineage: B.1.429 lineage
has for lineage: B.1.616 lineage
mutation name: t265i

t3058i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.38 lineage
mutation name: t3058i

B.1.1.39 lineage
type: B.1.1.39
type: NamedIndividual
label: B.1.1.39
has for description: Mostly Switzerland with lots of other countries

p199s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.39 lineage
has for lineage: AQ.1 lineage
has for lineage: AQ.2 lineage
mutation name: p199s

v72i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.39 lineage
has for lineage: AQ.1 lineage
has for lineage: AQ.2 lineage
mutation name: v72i

AQ.1 lineage
type: AQ.1
type: NamedIndividual
label: AQ.1
has for description: Alias of B.1.1.39.1, Finland lineage
has for alias: B.1.1.39.1

a872v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: AQ.1 lineage
mutation name: a872v

e2164a
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: AQ.1 lineage
mutation name: e2164a

AQ.2 lineage
type: AQ.2
type: NamedIndividual
label: AQ.2
has for description: Alias of B.1.1.39.2, Denmark lineage
has for alias: B.1.1.39.2

m1765v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: AQ.2 lineage
mutation name: m1765v

B.1.1.40 lineage
type: B.1.1.40
type: NamedIndividual
label: B.1.1.40
has for description: South African lineage

t310i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.40 lineage
mutation name: t310i

B.1.1.41 lineage
type: B.1.1.41
type: NamedIndividual
label: B.1.1.41
has for description: England lineage

B.1.1.43 lineage
type: B.1.1.43
type: NamedIndividual
label: B.1.1.43
has for description: Scottish lineage

w31c
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: B.1.1.43 lineage
mutation name: w31c

B.1.1.44 lineage
type: B.1.1.44
type: NamedIndividual
label: B.1.1.44
has for description: Pan-European, big scottish section

g204l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.1.44 lineage
mutation name: g204l

r2613n
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.44 lineage
mutation name: r2613n

n1898s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.44 lineage
mutation name: n1898s

r1464w
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.44 lineage
mutation name: r1464w

p2612l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.44 lineage
mutation name: p2612l

B.1.1.45 lineage
type: B.1.1.45
type: NamedIndividual
label: B.1.1.45
has for description: UK

s442c
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.45 lineage
mutation name: s442c

B.1.1.46 lineage
type: B.1.1.46
type: NamedIndividual
label: B.1.1.46
has for description: Mostly India

s318l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.46 lineage
mutation name: s318l

B.1.1.47 lineage
type: B.1.1.47
type: NamedIndividual
label: B.1.1.47
has for description: Switzerland and other Northern Europe

t2099i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.47 lineage
mutation name: t2099i

B.1.1.48 lineage
type: B.1.1.48
type: NamedIndividual
label: B.1.1.48
has for description: Japan

v70i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: B.1.1.48 lineage
mutation name: v70i

B.1.1.49 lineage
type: B.1.1.49
type: NamedIndividual
label: B.1.1.49
has for description: Wales

B.1.1.50 lineage
type: B.1.1.50
type: NamedIndividual
label: B.1.1.50
has for description: Israel and Palestine

m657i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.50 lineage
mutation name: m657i

w131c
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.50 lineage
mutation name: w131c

B.1.1.51 lineage
type: B.1.1.51
type: NamedIndividual
label: B.1.1.51
has for description: UK

l3644f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.51 lineage
mutation name: l3644f

B.1.1.52 lineage
type: B.1.1.52
type: NamedIndividual
label: B.1.1.52
has for description: South Africa

B.1.1.53 lineage
type: B.1.1.53
type: NamedIndividual
label: B.1.1.53
has for description: South Africa

a3209s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.53 lineage
mutation name: a3209s

e2284g
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.53 lineage
mutation name: e2284g

B.1.1.54 lineage
type: B.1.1.54
type: NamedIndividual
label: B.1.1.54
has for description: South African Lineage

y4080h
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.54 lineage
mutation name: y4080h

r126s
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.1.54 lineage
mutation name: r126s

t2166i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.54 lineage
mutation name: t2166i

B.1.1.55 lineage
type: B.1.1.55
type: NamedIndividual
label: B.1.1.55
has for description: English lineage

a3392v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.55 lineage
mutation name: a3392v

s1252p
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.55 lineage
mutation name: s1252p

e754a
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.55 lineage
mutation name: e754a

q1208h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.55 lineage
mutation name: q1208h

l5f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.55 lineage
mutation name: l5f

B.1.1.56 lineage
type: B.1.1.56
type: NamedIndividual
label: B.1.1.56
has for description: South African lineage

g769v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.56 lineage
has for lineage: R.1 lineage
mutation name: g769v

B.1.1.57 lineage
type: B.1.1.57
type: NamedIndividual
label: B.1.1.57
has for description: South African lineage, a few English sequences, one Zimbabwe

p2256l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.57 lineage
mutation name: p2256l

B.1.1.58 lineage
type: B.1.1.58
type: NamedIndividual
label: B.1.1.58
has for description: European lineage

p2256s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.58 lineage
mutation name: p2256s

a55t
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.58 lineage
mutation name: a55t

B.1.1.59 lineage
type: B.1.1.59
type: NamedIndividual
label: B.1.1.59
has for description: UK lineage

B.1.1.61 lineage
type: B.1.1.61
type: NamedIndividual
label: B.1.1.61
has for description: USA lineage

v1811f
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.1.61 lineage
mutation name: v1811f

B.1.1.62 lineage
type: B.1.1.62
type: NamedIndividual
label: B.1.1.62
has for description: South African lineage

B.1.1.63 lineage
type: B.1.1.63
type: NamedIndividual
label: B.1.1.63
has for description: Hong Kong lineage

B.1.1.67 lineage
type: B.1.1.67
type: NamedIndividual
label: B.1.1.67
has for description: England and South Africa

d3728n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.67 lineage
mutation name: d3728n

t29i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.67 lineage
mutation name: t29i

B.1.1.70 lineage
type: B.1.1.70
type: NamedIndividual
label: B.1.1.70
has for description: European Lineage

AP.1 lineage
type: AP.1
type: NamedIndividual
label: AP.1
has for description: Alias of B.1.1.70.1, Wales lineage
has for alias: B.1.1.70.1

y156c
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: AP.1 lineage
mutation name: y156c

q9h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: AP.1 lineage
mutation name: q9h

h2357y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: AP.1 lineage
mutation name: h2357y

t2084i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: AP.1 lineage
mutation name: t2084i

p3395l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: AP.1 lineage
mutation name: p3395l

s944l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: AP.1 lineage
mutation name: s944l

t14i
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: AP.1 lineage
mutation name: t14i

m2322i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: AP.1 lineage
mutation name: m2322i

a2268v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: AP.1 lineage
mutation name: a2268v

B.1.1.71 lineage
type: B.1.1.71
type: NamedIndividual
label: B.1.1.71
has for description: Dutch, Central Europe

B.1.1.72 lineage
type: B.1.1.72
type: NamedIndividual
label: B.1.1.72
has for description: US lineage

f26l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: B.1.1.72 lineage
mutation name: f26l

v2715i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.72 lineage
mutation name: v2715i

t747i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.72 lineage
mutation name: t747i

B.1.1.74 lineage
type: B.1.1.74
type: NamedIndividual
label: B.1.1.74
has for description: NI & Ireland Lineage

e2619q
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.74 lineage
mutation name: e2619q

g993s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.74 lineage
mutation name: g993s

e64*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.74 lineage
mutation name: e64*

B.1.1.75 lineage
type: B.1.1.75
type: NamedIndividual
label: B.1.1.75
has for description: Belgian lineage

a846v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.75 lineage
mutation name: a846v

B.1.1.77 lineage
type: B.1.1.77
type: NamedIndividual
label: B.1.1.77
has for description: US Lineage

e106*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.77 lineage
mutation name: e106*

d34n
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.77 lineage
mutation name: d34n

B.1.1.82 lineage
type: B.1.1.82
type: NamedIndividual
label: B.1.1.82
has for description: Wales lineage

B.1.1.83 lineage
type: B.1.1.83
type: NamedIndividual
label: B.1.1.83
has for description: Northern Irish lineage

B.1.1.84 lineage
type: B.1.1.84
type: NamedIndividual
label: B.1.1.84
has for description: South African

B.1.1.86 lineage
type: B.1.1.86
type: NamedIndividual
label: B.1.1.86
has for description: UK lineage

B.1.1.87 lineage
type: B.1.1.87
type: NamedIndividual
label: B.1.1.87
has for description: Hungarian lineage

B.1.1.88 lineage
type: B.1.1.88
type: NamedIndividual
label: B.1.1.88
has for description: Portugal lineage

B.1.1.89 lineage
type: B.1.1.89
type: NamedIndividual
label: B.1.1.89
has for description: England

B.1.1.90 lineage
type: B.1.1.90
type: NamedIndividual
label: B.1.1.90
has for description: Sweden and Denmark lineage

B.1.1.91 lineage
type: B.1.1.91
type: NamedIndividual
label: B.1.1.91
has for description: Sweden

B.1.1.92 lineage
type: B.1.1.92
type: NamedIndividual
label: B.1.1.92
has for description: English lineage

B.1.1.93 lineage
type: B.1.1.93
type: NamedIndividual
label: B.1.1.93
has for description: US Lineage

B.1.1.95 lineage
type: B.1.1.95
type: NamedIndividual
label: B.1.1.95
has for description: English lineage

B.1.1.97 lineage
type: B.1.1.97
type: NamedIndividual
label: B.1.1.97
has for description: England

B.1.1.98 lineage
type: B.1.1.98
type: NamedIndividual
label: B.1.1.98
has for description: US lineage

B.1.1.99 lineage
type: B.1.1.99
type: NamedIndividual
label: B.1.1.99
has for description: Mostly South Africa

B.1.1.100 lineage
type: B.1.1.100
type: NamedIndividual
label: B.1.1.100
has for description: Denmark lineage

B.1.1.101 lineage
type: B.1.1.101
type: NamedIndividual
label: B.1.1.101
has for description: Indian lineage

B.1.1.107 lineage
type: B.1.1.107
type: NamedIndividual
label: B.1.1.107
has for description: England

B.1.1.109 lineage
type: B.1.1.109
type: NamedIndividual
label: B.1.1.109
has for description: UK lineage

B.1.1.110 lineage
type: B.1.1.110
type: NamedIndividual
label: B.1.1.110
has for description: Peru lineage

B.1.1.111 lineage
type: B.1.1.111
type: NamedIndividual
label: B.1.1.111
has for description: African lineage (Zambia, Zimbabwe)

B.1.1.112 lineage
type: B.1.1.112
type: NamedIndividual
label: B.1.1.112
has for description: Netherlands

B.1.1.113 lineage
type: B.1.1.113
type: NamedIndividual
label: B.1.1.113
has for description: Western USA

B.1.1.114 lineage
type: B.1.1.114
type: NamedIndividual
label: B.1.1.114
has for description: Wales

B.1.1.115 lineage
type: B.1.1.115
type: NamedIndividual
label: B.1.1.115
has for description: UK lineage, now contains former B.1.1.235

B.1.1.116 lineage
type: B.1.1.116
type: NamedIndividual
label: B.1.1.116
has for description: USA lineage

B.1.1.117 lineage
type: B.1.1.117
type: NamedIndividual
label: B.1.1.117
has for description: South African some Argentina, now contains B.1.1.252

B.1.1.118 lineage
type: B.1.1.118
type: NamedIndividual
label: B.1.1.118
has for description: US Lineage (TX)

B.1.1.119 lineage
type: B.1.1.119
type: NamedIndividual
label: B.1.1.119
has for description: Northern Ireland lineage

B.1.1.120 lineage
type: B.1.1.120
type: NamedIndividual
label: B.1.1.120
has for description: UK lineage

B.1.1.121 lineage
type: B.1.1.121
type: NamedIndividual
label: B.1.1.121
has for description: Canadian lineage

B.1.1.122 lineage
type: B.1.1.122
type: NamedIndividual
label: B.1.1.122
has for description: Netherlands

B.1.1.123 lineage
type: B.1.1.123
type: NamedIndividual
label: B.1.1.123
has for description: UK lineage

B.1.1.125 lineage
type: B.1.1.125
type: NamedIndividual
label: B.1.1.125
has for description: UK lineage

B.1.1.127 lineage
type: B.1.1.127
type: NamedIndividual
label: B.1.1.127
has for description: Russian lineage

B.1.1.128 lineage
type: B.1.1.128
type: NamedIndividual
label: B.1.1.128
has for description: US lineage

B.1.1.129 lineage
type: B.1.1.129
type: NamedIndividual
label: B.1.1.129
has for description: Russian lineage

B.1.1.130 lineage
type: B.1.1.130
type: NamedIndividual
label: B.1.1.130
has for description: England

B.1.1.132 lineage
type: B.1.1.132
type: NamedIndividual
label: B.1.1.132
has for description: US Lineage

B.1.1.133 lineage
type: B.1.1.133
type: NamedIndividual
label: B.1.1.133
has for description: UAE/ European lineage

B.1.1.134 lineage
type: B.1.1.134
type: NamedIndividual
label: B.1.1.134
has for description: UK

B.1.1.135 lineage
type: B.1.1.135
type: NamedIndividual
label: B.1.1.135
has for description: US

B.1.1.136 lineage
type: B.1.1.136
type: NamedIndividual
label: B.1.1.136
has for description: Australian lineage

B.1.1.137 lineage
type: B.1.1.137
type: NamedIndividual
label: B.1.1.137
has for description: UK lineage

B.1.1.138 lineage
type: B.1.1.138
type: NamedIndividual
label: B.1.1.138
has for description: UK lineage

B.1.1.139 lineage
type: B.1.1.139
type: NamedIndividual
label: B.1.1.139
has for description: USA

B.1.1.141 lineage
type: B.1.1.141
type: NamedIndividual
label: B.1.1.141
has for description: Russian, Latvian, Netherlands

B.1.1.142 lineage
type: B.1.1.142
type: NamedIndividual
label: B.1.1.142
has for description: Australian lineage

B.1.1.144 lineage
type: B.1.1.144
type: NamedIndividual
label: B.1.1.144
has for description: Swiss lineage

B.1.1.145 lineage
type: B.1.1.145
type: NamedIndividual
label: B.1.1.145
has for description: UK lineage

B.1.1.147 lineage
type: B.1.1.147
type: NamedIndividual
label: B.1.1.147
has for description: England

B.1.1.148 lineage
type: B.1.1.148
type: NamedIndividual
label: B.1.1.148
has for description: US lineage

B.1.1.149 lineage
type: B.1.1.149
type: NamedIndividual
label: B.1.1.149
has for description: English Lineage

B.1.1.152 lineage
type: B.1.1.152
type: NamedIndividual
label: B.1.1.152
has for description: Russian

B.1.1.153 lineage
type: B.1.1.153
type: NamedIndividual
label: B.1.1.153
has for description: Northern European Lineage

B.1.1.154 lineage
type: B.1.1.154
type: NamedIndividual
label: B.1.1.154
has for description: UK lineage

B.1.1.155 lineage
type: B.1.1.155
type: NamedIndividual
label: B.1.1.155
has for description: English

B.1.1.157 lineage
type: B.1.1.157
type: NamedIndividual
label: B.1.1.157
has for description: Canadian lineage

B.1.1.158 lineage
type: B.1.1.158
type: NamedIndividual
label: B.1.1.158
has for description: USA lineage

B.1.1.159 lineage
type: B.1.1.159
type: NamedIndividual
label: B.1.1.159
has for description: European lineage

B.1.1.160 lineage
type: B.1.1.160
type: NamedIndividual
label: B.1.1.160
has for description: Northern Ireland lineage

B.1.1.161 lineage
type: B.1.1.161
type: NamedIndividual
label: B.1.1.161
has for description: Saudi lineage

B.1.1.162 lineage
type: B.1.1.162
type: NamedIndividual
label: B.1.1.162
has for description: England, Russia, Latvia

B.1.1.163 lineage
type: B.1.1.163
type: NamedIndividual
label: B.1.1.163
has for description: Russian lineage

B.1.1.164 lineage
type: B.1.1.164
type: NamedIndividual
label: B.1.1.164
has for description: UK

B.1.1.165 lineage
type: B.1.1.165
type: NamedIndividual
label: B.1.1.165
has for description: England

B.1.1.166 lineage
type: B.1.1.166
type: NamedIndividual
label: B.1.1.166
has for description: UK lineage

B.1.1.168 lineage
type: B.1.1.168
type: NamedIndividual
label: B.1.1.168
has for description: UK lineage

B.1.1.169 lineage
type: B.1.1.169
type: NamedIndividual
label: B.1.1.169
has for description: USA lineage

B.1.1.170 lineage
type: B.1.1.170
type: NamedIndividual
label: B.1.1.170
has for description: UK/Denmark lineage

B.1.1.171 lineage
type: B.1.1.171
type: NamedIndividual
label: B.1.1.171
has for description: UK lineage

B.1.1.172 lineage
type: B.1.1.172
type: NamedIndividual
label: B.1.1.172
has for description: USA

B.1.1.174 lineage
type: B.1.1.174
type: NamedIndividual
label: B.1.1.174
has for description: USA lineage

B.1.1.175 lineage
type: B.1.1.175
type: NamedIndividual
label: B.1.1.175
has for description: Bangladesh

B.1.1.176 lineage
type: B.1.1.176
type: NamedIndividual
label: B.1.1.176
has for description: Canadian lineage

B.1.1.177 lineage
type: B.1.1.177
type: NamedIndividual
label: B.1.1.177
has for description: Texas

B.1.1.178 lineage
type: B.1.1.178
type: NamedIndividual
label: B.1.1.178
has for description: England

B.1.1.180 lineage
type: B.1.1.180
type: NamedIndividual
label: B.1.1.180
has for description: USA lineage

B.1.1.181 lineage
type: B.1.1.181
type: NamedIndividual
label: B.1.1.181
has for description: Used to be just Turkey, now lots of Canadian

B.1.1.182 lineage
type: B.1.1.182
type: NamedIndividual
label: B.1.1.182
has for description: USA

B.1.1.184 lineage
type: B.1.1.184
type: NamedIndividual
label: B.1.1.184
has for description: Russia, some B.1.1.129

B.1.1.185 lineage
type: B.1.1.185
type: NamedIndividual
label: B.1.1.185
has for description: Netherlands lineage

B.1.1.186 lineage
type: B.1.1.186
type: NamedIndividual
label: B.1.1.186
has for description: Southern USA

B.1.1.187 lineage
type: B.1.1.187
type: NamedIndividual
label: B.1.1.187
has for description: UK and italy

B.1.1.189 lineage
type: B.1.1.189
type: NamedIndividual
label: B.1.1.189
has for description: European lineage

B.1.1.190 lineage
type: B.1.1.190
type: NamedIndividual
label: B.1.1.190
has for description: Wales lineage

B.1.1.191 lineage
type: B.1.1.191
type: NamedIndividual
label: B.1.1.191
has for description: Denmark

B.1.1.192 lineage
type: B.1.1.192
type: NamedIndividual
label: B.1.1.192
has for description: USA

B.1.1.193 lineage
type: B.1.1.193
type: NamedIndividual
label: B.1.1.193
has for description: England

B.1.1.194 lineage
type: B.1.1.194
type: NamedIndividual
label: B.1.1.194
has for description: England

B.1.1.196 lineage
type: B.1.1.196
type: NamedIndividual
label: B.1.1.196
has for description: UK lineage

B.1.1.197 lineage
type: B.1.1.197
type: NamedIndividual
label: B.1.1.197
has for description: UK lineage

B.1.1.198 lineage
type: B.1.1.198
type: NamedIndividual
label: B.1.1.198
has for description: UK/ Luxembourg lineage

q18*
type: SNP
type: NamedIndividual
has for gene: orf8
has for lineage: B.1.1.198 lineage
has for lineage: XAS lineage
mutation name: q18*

d203y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.1.198 lineage
mutation name: d203y

B.1.1.200 lineage
type: B.1.1.200
type: NamedIndividual
label: B.1.1.200
has for description: UK

AN.1 lineage
type: AN.1
type: NamedIndividual
label: AN.1
has for description: Alias of B.1.1.200.1, Sweden and Netherlands, from B.1.1.130
has for alias: B.1.1.200.1

B.1.1.201 lineage
type: B.1.1.201
type: NamedIndividual
label: B.1.1.201
has for description: India and Singapore and Texas

B.1.1.202 lineage
type: B.1.1.202
type: NamedIndividual
label: B.1.1.202
has for description: Italy

B.1.1.203 lineage
type: B.1.1.203
type: NamedIndividual
label: B.1.1.203
has for description: England and Ecuador

B.1.1.204 lineage
type: B.1.1.204
type: NamedIndividual
label: B.1.1.204
has for description: UK lineage

B.1.1.205 lineage
type: B.1.1.205
type: NamedIndividual
label: B.1.1.205
has for description: USA lineage

B.1.1.207 lineage
type: B.1.1.207
type: NamedIndividual
label: B.1.1.207
has for description: USA

B.1.1.208 lineage
type: B.1.1.208
type: NamedIndividual
label: B.1.1.208
has for description: UK

B.1.1.209 lineage
type: B.1.1.209
type: NamedIndividual
label: B.1.1.209
has for description: Netherlands

B.1.1.210 lineage
type: B.1.1.210
type: NamedIndividual
label: B.1.1.210
has for description: USA (TX)

B.1.1.213 lineage
type: B.1.1.213
type: NamedIndividual
label: B.1.1.213
has for description: England

B.1.1.214 lineage
type: B.1.1.214
type: NamedIndividual
label: B.1.1.214
has for description: Japan

B.1.1.216 lineage
type: B.1.1.216
type: NamedIndividual
label: B.1.1.216
has for description: Predominantly Indian lineage with exports elsewhere

AM.1 lineage
type: AM.1
type: NamedIndividual
label: AM.1
has for description: Alias of B.1.1.216.1, Portugal lineage
has for alias: B.1.1.216.1

AM.2 lineage
type: AM.2
type: NamedIndividual
label: AM.2
has for description: Alias of B.1.1.216.2, Canadian lineage
has for alias: B.1.1.216.2

AM.3 lineage
type: AM.3
type: NamedIndividual
label: AM.3
has for description: Alias of B.1.1.216.3, UK lineage
has for alias: B.1.1.216.3

AM.4 lineage
type: AM.4
type: NamedIndividual
label: AM.4
has for description: Alias of B.1.1.216.4, Canadian lineage
has for alias: B.1.1.216.4

B.1.1.217 lineage
type: B.1.1.217
type: NamedIndividual
label: B.1.1.217
has for description: UK lineage

S.1 lineage
type: S.1
type: NamedIndividual
label: S.1
has for description: Alias of B.1.1.217.1, Latvian lineage, previously I.1
has for alias: B.1.1.217.1

B.1.1.218 lineage
type: B.1.1.218
type: NamedIndividual
label: B.1.1.218
has for description: European lineage

B.1.1.219 lineage
type: B.1.1.219
type: NamedIndividual
label: B.1.1.219
has for description: Northern Europe (UK, Denmark, Norway, Sweden)

B.1.1.220 lineage
type: B.1.1.220
type: NamedIndividual
label: B.1.1.220
has for description: UK lineage

B.1.1.221 lineage
type: B.1.1.221
type: NamedIndividual
label: B.1.1.221
has for description: Belgian lineage

B.1.1.222 lineage
type: B.1.1.222
type: NamedIndividual
label: B.1.1.222
has for description: USA/Mexico

B.1.1.224 lineage
type: B.1.1.224
type: NamedIndividual
label: B.1.1.224
has for description: Denmark (some German)

B.1.1.225 lineage
type: B.1.1.225
type: NamedIndividual
label: B.1.1.225
has for description: USA

B.1.1.226 lineage
type: B.1.1.226
type: NamedIndividual
label: B.1.1.226
has for description: USA lineage

B.1.1.227 lineage
type: B.1.1.227
type: NamedIndividual
label: B.1.1.227
has for description: England

B.1.1.228 lineage
type: B.1.1.228
type: NamedIndividual
label: B.1.1.228
has for description: USA (WA)

B.1.1.231 lineage
type: B.1.1.231
type: NamedIndividual
label: B.1.1.231
has for description: USA lineage

AL.1 lineage
type: AL.1
type: NamedIndividual
label: AL.1
has for description: Alias of B.1.1.231.1, Canada lineage
has for alias: B.1.1.231.1

B.1.1.232 lineage
type: B.1.1.232
type: NamedIndividual
label: B.1.1.232
has for description: Northern Europe (UK, Germany, Denmark, Belgium, NL)

AK.1 lineage
type: AK.1
type: NamedIndividual
label: AK.1
has for description: Alias of B.1.1.232.1, UK lineage
has for alias: B.1.1.232.1

AK.2 lineage
type: AK.2
type: NamedIndividual
label: AK.2
has for description: Alias of B.1.1.232.2, German lineage
has for alias: B.1.1.232.2

B.1.1.234 lineage
type: B.1.1.234
type: NamedIndividual
label: B.1.1.234
has for description: England, Ireland, Northern Ireland, Northern Europe

B.1.1.236 lineage
type: B.1.1.236
type: NamedIndividual
label: B.1.1.236
has for description: UK

B.1.1.237 lineage
type: B.1.1.237
type: NamedIndividual
label: B.1.1.237
has for description: Wales

B.1.1.239 lineage
type: B.1.1.239
type: NamedIndividual
label: B.1.1.239
has for description: USA lineage

B.1.1.241 lineage
type: B.1.1.241
type: NamedIndividual
label: B.1.1.241
has for description: European lineage

AH.1 lineage
type: AH.1
type: NamedIndividual
label: AH.1
has for description: Alias of B.1.1.241.1, Swiss Lineage
has for alias: B.1.1.241.1

AH.2 lineage
type: AH.2
type: NamedIndividual
label: AH.2
has for description: Alias of B.1.1.241.2, French Lineage
has for alias: B.1.1.241.2

AH.3 lineage
type: AH.3
type: NamedIndividual
label: AH.3
has for description: Alias of B.1.1.241.3, Finnish Lineage
has for alias: B.1.1.241.3

B.1.1.240 lineage
type: B.1.1.240
type: NamedIndividual
label: B.1.1.240
has for description: UK lineage

AJ.1 lineage
type: AJ.1
type: NamedIndividual
label: AJ.1
has for description: Alias of B.1.1.240.1, Portugal lineage
has for alias: B.1.1.240.1

B.1.1.242 lineage
type: B.1.1.242
type: NamedIndividual
label: B.1.1.242
has for description: Gambia and Switzerland

B.1.1.243 lineage
type: B.1.1.243
type: NamedIndividual
label: B.1.1.243
has for description: Eastern Europe, Central Europe, UK

B.1.1.244 lineage
type: B.1.1.244
type: NamedIndividual
label: B.1.1.244
has for description: USA lineage

B.1.1.249 lineage
type: B.1.1.249
type: NamedIndividual
label: B.1.1.249
has for description: Welsh Lineage

B.1.1.251 lineage
type: B.1.1.251
type: NamedIndividual
label: B.1.1.251
has for description: UK and US

B.1.1.253 lineage
type: B.1.1.253
type: NamedIndividual
label: B.1.1.253
has for description: UK

B.1.1.254 lineage
type: B.1.1.254
type: NamedIndividual
label: B.1.1.254
has for description: Mostly South Africa

B.1.1.255 lineage
type: B.1.1.255
type: NamedIndividual
label: B.1.1.255
has for description: UK lineage

B.1.1.256 lineage
type: B.1.1.256
type: NamedIndividual
label: B.1.1.256
has for description: UK lineage

B.1.1.258 lineage
type: B.1.1.258
type: NamedIndividual
label: B.1.1.258
has for description: USA (TX)

B.1.1.261 lineage
type: B.1.1.261
type: NamedIndividual
label: B.1.1.261
has for description: Swedish/ Danish/ Faroe Islands lineage

B.1.1.257 lineage
type: B.1.1.257
type: NamedIndividual
label: B.1.1.257
has for description: Mostly UK lineage with other northern european plus one singapore

B.1.1.262 lineage
type: B.1.1.262
type: NamedIndividual
label: B.1.1.262
has for description: UK lineage

B.1.1.263 lineage
type: B.1.1.263
type: NamedIndividual
label: B.1.1.263
has for description: UAE lineage (~95%)

B.1.1.265 lineage
type: B.1.1.265
type: NamedIndividual
label: B.1.1.265
has for description: USA lineage

B.1.1.266 lineage
type: B.1.1.266
type: NamedIndividual
label: B.1.1.266
has for description: Czech lineage

B.1.1.267 lineage
type: B.1.1.267
type: NamedIndividual
label: B.1.1.267
has for description: Irish lineage

B.1.1.268 lineage
type: B.1.1.268
type: NamedIndividual
label: B.1.1.268
has for description: USA lineage

B.1.1.269 lineage
type: B.1.1.269
type: NamedIndividual
label: B.1.1.269
has for description: European lineage

B.1.1.270 lineage
type: B.1.1.270
type: NamedIndividual
label: B.1.1.270
has for description: UK lineage

B.1.1.271 lineage
type: B.1.1.271
type: NamedIndividual
label: B.1.1.271
has for description: German and Austrian lineage

B.1.1.272 lineage
type: B.1.1.272
type: NamedIndividual
label: B.1.1.272
has for description: Denmark

B.1.1.273 lineage
type: B.1.1.273
type: NamedIndividual
label: B.1.1.273
has for description: South african lineage, previously part of B.1.1.56

B.1.1.274 lineage
type: B.1.1.274
type: NamedIndividual
label: B.1.1.274
has for description: England, Thailand, Russia, USA

B.1.1.275 lineage
type: B.1.1.275
type: NamedIndividual
label: B.1.1.275
has for description: DRC with some UAE and England

B.1.1.277 lineage
type: B.1.1.277
type: NamedIndividual
label: B.1.1.277
has for description: European lineage

K.1 lineage
type: K.1
type: NamedIndividual
label: K.1
has for description: Alias of B.1.1.277.1, South Korean lineage
has for alias: B.1.1.277.1

K.2 lineage
type: K.2
type: NamedIndividual
label: K.2
has for description: Alias of B.1.1.277.2, Russian lineage
has for alias: B.1.1.277.2

K.3 lineage
type: K.3
type: NamedIndividual
label: K.3
has for description: Alias of B.1.1.277.3, Norway lineage
has for alias: B.1.1.277.3

B.1.1.279 lineage
type: B.1.1.279
type: NamedIndividual
label: B.1.1.279
has for description: English Lineage

B.1.1.280 lineage
type: B.1.1.280
type: NamedIndividual
label: B.1.1.280
has for description: Lithuanian lineage

B.1.1.282 lineage
type: B.1.1.282
type: NamedIndividual
label: B.1.1.282
has for description: Netherlands lineage

B.1.1.283 lineage
type: B.1.1.283
type: NamedIndividual
label: B.1.1.283
has for description: Japan

B.1.1.284 lineage
type: B.1.1.284
type: NamedIndividual
label: B.1.1.284
has for description: Japan

B.1.1.285 lineage
type: B.1.1.285
type: NamedIndividual
label: B.1.1.285
has for description: Japan/ USA lineage

B.1.1.286 lineage
type: B.1.1.286
type: NamedIndividual
label: B.1.1.286
has for description: UK

B.1.1.288 lineage
type: B.1.1.288
type: NamedIndividual
label: B.1.1.288
has for description: Danish Lineage

B.1.1.289 lineage
type: B.1.1.289
type: NamedIndividual
label: B.1.1.289
has for description: UK lineage

B.1.1.290 lineage
type: B.1.1.290
type: NamedIndividual
label: B.1.1.290
has for description: USA lineage

B.1.1.291 lineage
type: B.1.1.291
type: NamedIndividual
label: B.1.1.291
has for description: USA Lineage

B.1.1.294 lineage
type: B.1.1.294
type: NamedIndividual
label: B.1.1.294
has for description: Russian and UK lineage

M.1 lineage
type: M.1
type: NamedIndividual
label: M.1
has for description: Alias of B.1.1.294.1, Israel
has for alias: B.1.1.294.1

M.2 lineage
type: M.2
type: NamedIndividual
label: M.2
has for description: Alias of B.1.1.294.2, Swiss Lineage
has for alias: B.1.1.294.2

M.3 lineage
type: M.3
type: NamedIndividual
label: M.3
has for description: Alias of B.1.1.294.3, English Lineage
has for alias: B.1.1.294.3

B.1.1.296 lineage
type: B.1.1.296
type: NamedIndividual
label: B.1.1.296
has for description: UK lineage

B.1.1.297 lineage
type: B.1.1.297
type: NamedIndividual
label: B.1.1.297
has for description: Central Europe lineage

AG.1 lineage
type: AG.1
type: NamedIndividual
label: AG.1
has for description: Alias of B.1.1.297.1, Netherlands lineage
has for alias: B.1.1.297.1

B.1.1.298 lineage
type: B.1.1.298
type: NamedIndividual
label: B.1.1.298
has for description: Denmark Lineage

B.1.1.299 lineage
type: B.1.1.299
type: NamedIndividual
label: B.1.1.299
has for description: UK lineage

B.1.1.300 lineage
type: B.1.1.300
type: NamedIndividual
label: B.1.1.300
has for description: UK lineage

B.1.1.301 lineage
type: B.1.1.301
type: NamedIndividual
label: B.1.1.301
has for description: UK lineage

B.1.1.302 lineage
type: B.1.1.302
type: NamedIndividual
label: B.1.1.302
has for description: Swedish lineage

B.1.1.303 lineage
type: B.1.1.303
type: NamedIndividual
label: B.1.1.303
has for description: UK

B.1.1.304 lineage
type: B.1.1.304
type: NamedIndividual
label: B.1.1.304
has for description: UK/USA lineage

B.1.1.305 lineage
type: B.1.1.305
type: NamedIndividual
label: B.1.1.305
has for description: Pan European

AF.1 lineage
type: AF.1
type: NamedIndividual
label: AF.1
has for description: Alias of B.1.1.305.1, Switzerland
has for alias: B.1.1.305.1

B.1.1.306 lineage
type: B.1.1.306
type: NamedIndividual
label: B.1.1.306
has for description: Big indian lineage, exports to Zambia, Bahrain and Canada

AE.1 lineage
type: AE.1
type: NamedIndividual
label: AE.1
has for description: Alias of B.1.1.306.1, Zambian
has for alias: B.1.1.306.1

AE.2 lineage
type: AE.2
type: NamedIndividual
label: AE.2
has for description: Alias of B.1.1.306.2, Bahrain
has for alias: B.1.1.306.2

AE.3 lineage
type: AE.3
type: NamedIndividual
label: AE.3
has for description: Alias of B.1.1.306.3, Zambia and Rwanda
has for alias: B.1.1.306.3

AE.4 lineage
type: AE.4
type: NamedIndividual
label: AE.4
has for description: Alias of B.1.1.306.4, Bahrain
has for alias: B.1.1.306.4

AE.5 lineage
type: AE.5
type: NamedIndividual
label: AE.5
has for description: Alias of B.1.1.306.5, Zambia
has for alias: B.1.1.306.5

AE.6 lineage
type: AE.6
type: NamedIndividual
label: AE.6
has for description: Alias of B.1.1.306.6, Bahrain
has for alias: B.1.1.306.6

AE.7 lineage
type: AE.7
type: NamedIndividual
label: AE.7
has for description: Alias of B.1.1.306.7, Bahrain
has for alias: B.1.1.306.7

AE.8 lineage
type: AE.8
type: NamedIndividual
label: AE.8
has for description: Alias of B.1.1.306.8, Canada lineage
has for alias: B.1.1.306.8

B.1.1.307 lineage
type: B.1.1.307
type: NamedIndividual
label: B.1.1.307
has for description: UK lineage

B.1.1.308 lineage
type: B.1.1.308
type: NamedIndividual
label: B.1.1.308
has for description: UK

B.1.1.309 lineage
type: B.1.1.309
type: NamedIndividual
label: B.1.1.309
has for description: Now all England, was US, so probably split from something

B.1.1.310 lineage
type: B.1.1.310
type: NamedIndividual
label: B.1.1.310
has for description: Northern Irish with English root

B.1.1.311 lineage
type: B.1.1.311
type: NamedIndividual
label: B.1.1.311
has for description: Huge UK lineage

B.1.1.312 lineage
type: B.1.1.312
type: NamedIndividual
label: B.1.1.312
has for description: Jordan lineage

B.1.1.315 lineage
type: B.1.1.315
type: NamedIndividual
label: B.1.1.315
has for description: Previously D.1, UK/ UAE lineage

AD.1 lineage
type: AD.1
type: NamedIndividual
label: AD.1
has for description: Alias of B.1.1.315.1, Denmark lineage
has for alias: B.1.1.315.1

AD.2 lineage
type: AD.2
type: NamedIndividual
label: AD.2
has for description: Alias of B.1.1.315.2, UK lineage
has for alias: B.1.1.315.2

AD.2.1 lineage
type: AD.2.1
type: NamedIndividual
label: AD.2.1
has for description: Alias of B.1.1.315.2.1, Lithuanian lineage
has for alias: B.1.1.315.2.1

B.1.1.316 lineage
type: B.1.1.316
type: NamedIndividual
label: B.1.1.316
has for description: International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation

R.1 lineage
type: R.1
type: NamedIndividual
label: R.1
has for description: Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries. pango-designation issue #17
has for alias: B.1.1.316.1

g1362r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: R.1 lineage
mutation name: g1362r

f28l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: R.1 lineage
mutation name: f28l

s187l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: R.1 lineage
mutation name: s187l

q418h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: R.1 lineage
mutation name: q418h

p1936h
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: R.1 lineage
mutation name: p1936h

w152l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: R.1 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: w152l

R.2 lineage
type: R.2
type: NamedIndividual
label: R.2
has for description: Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K. pango-designation issue #18
has for alias: B.1.1.316.2

B.1.1.317 lineage
type: B.1.1.317
type: NamedIndividual
label: B.1.1.317
has for description: Russian lineage

AS.1 lineage
type: AS.1
type: NamedIndividual
label: AS.1
has for description: Alias of B.1.1.317.1, UK lineage
has for alias: B.1.1.317.1

AS.2 lineage
type: AS.2
type: NamedIndividual
label: AS.2
has for description: Alias of B.1.1.317.2, UK lineage
has for alias: B.1.1.317.2

B.1.1.318 lineage
type: B.1.1.318
type: NamedIndividual
label: B.1.1.318
has for description: Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del). pango-designation issue #15

AZ.1 lineage
type: AZ.1
type: NamedIndividual
label: AZ.1
has for description: Alias of B.1.1.318.1, Canada lineage, from pango-designation issue #171
has for alias: B.1.1.318.1

AZ.2 lineage
type: AZ.2
type: NamedIndividual
label: AZ.2
has for description: Alias of B.1.1.318.2, predominantly Greece lineage, from pango-designation issue #171
has for alias: B.1.1.318.2

AZ.2.1 lineage
type: AZ.2.1
type: NamedIndividual
label: AZ.2.1
has for description: Alias of B.1.1.318.2.1, Switzerland lineage, from pango-designation issue #171
has for alias: B.1.1.318.2.1

AZ.3 lineage
type: AZ.3
type: NamedIndividual
label: AZ.3
has for description: Alias of B.1.1.318.3, USA lineage, from pango-designation issue #171
has for alias: B.1.1.318.3

AZ.4 lineage
type: AZ.4
type: NamedIndividual
label: AZ.4
has for description: Alias of B.1.1.318.4, Ireland lineage, from pango-designation issue #171
has for alias: B.1.1.318.4

AZ.5 lineage
type: AZ.5
type: NamedIndividual
label: AZ.5
has for description: Alias of B.1.1.318.5, Mauritius lineage, from pango-designation issue #171
has for alias: B.1.1.318.5

AZ.6 lineage
type: AZ.6
type: NamedIndividual
label: AZ.6
has for description: Alias of B.1.1.318.6, Canada lineage, from pango-designation issue #171
has for alias: B.1.1.318.6

B.1.1.319 lineage
type: B.1.1.319
type: NamedIndividual
label: B.1.1.319
has for description: Russian/Serbian Lineage

B.1.1.320 lineage
type: B.1.1.320
type: NamedIndividual
label: B.1.1.320
has for description: USA lineage

B.1.1.322 lineage
type: B.1.1.322
type: NamedIndividual
label: B.1.1.322
has for description: Mexico/Southwest USA

B.1.1.323 lineage
type: B.1.1.323
type: NamedIndividual
label: B.1.1.323
has for description: Northern Europe, split from B.1.1.257

B.1.1.324 lineage
type: B.1.1.324
type: NamedIndividual
label: B.1.1.324
has for description: Chilean Lineage

B.1.1.325 lineage
type: B.1.1.325
type: NamedIndividual
label: B.1.1.325
has for description: Eastern Europe plus Belgium and Denmark

B.1.1.326 lineage
type: B.1.1.326
type: NamedIndividual
label: B.1.1.326
has for description: Indian Lineage

B.1.1.327 lineage
type: B.1.1.327
type: NamedIndividual
label: B.1.1.327
has for description: Swiss Lineage

B.1.1.328 lineage
type: B.1.1.328
type: NamedIndividual
label: B.1.1.328
has for description: Costa Rica and Florida

B.1.1.329 lineage
type: B.1.1.329
type: NamedIndividual
label: B.1.1.329
has for description: Pan-US

B.1.1.330 lineage
type: B.1.1.330
type: NamedIndividual
label: B.1.1.330
has for description: Chinese Lineage

B.1.1.331 lineage
type: B.1.1.331
type: NamedIndividual
label: B.1.1.331
has for description: Austrian lineage

B.1.1.332 lineage
type: B.1.1.332
type: NamedIndividual
label: B.1.1.332
has for description: Brazilian Lineage

B.1.1.333 lineage
type: B.1.1.333
type: NamedIndividual
label: B.1.1.333
has for description: Norwegian Lineage

B.1.1.334 lineage
type: B.1.1.334
type: NamedIndividual
label: B.1.1.334
has for description: USA and Mexico

B.1.1.335 lineage
type: B.1.1.335
type: NamedIndividual
label: B.1.1.335
has for description: USA and Canada

B.1.1.336 lineage
type: B.1.1.336
type: NamedIndividual
label: B.1.1.336
has for description: Russian lineage

B.1.1.337 lineage
type: B.1.1.337
type: NamedIndividual
label: B.1.1.337
has for description: US

B.1.1.338 lineage
type: B.1.1.338
type: NamedIndividual
label: B.1.1.338
has for description: German lineage

B.1.1.339 lineage
type: B.1.1.339
type: NamedIndividual
label: B.1.1.339
has for description: UAE and England

B.1.1.340 lineage
type: B.1.1.340
type: NamedIndividual
label: B.1.1.340
has for description: Indian Lineage

B.1.1.341 lineage
type: B.1.1.341
type: NamedIndividual
label: B.1.1.341
has for description: UK lineage

B.1.1.342 lineage
type: B.1.1.342
type: NamedIndividual
label: B.1.1.342
has for description: USA

B.1.1.343 lineage
type: B.1.1.343
type: NamedIndividual
label: B.1.1.343
has for description: Canadian lineage

B.1.1.344 lineage
type: B.1.1.344
type: NamedIndividual
label: B.1.1.344
has for description: Mexico, Texas

B.1.1.345 lineage
type: B.1.1.345
type: NamedIndividual
label: B.1.1.345
has for description: USA lineage

B.1.1.346 lineage
type: B.1.1.346
type: NamedIndividual
label: B.1.1.346
has for description: Denmark lineage

B.1.1.347 lineage
type: B.1.1.347
type: NamedIndividual
label: B.1.1.347
has for description: Central Europe

B.1.1.348 lineage
type: B.1.1.348
type: NamedIndividual
label: B.1.1.348
has for description: South America & USA

B.1.1.349 lineage
type: B.1.1.349
type: NamedIndividual
label: B.1.1.349
has for description: Russia, one "Congo"

B.1.1.350 lineage
type: B.1.1.350
type: NamedIndividual
label: B.1.1.350
has for description: Latvian lineage

B.1.1.351 lineage
type: B.1.1.351
type: NamedIndividual
label: B.1.1.351
has for description: USA, England, Finland, Denmark

B.1.1.352 lineage
type: B.1.1.352
type: NamedIndividual
label: B.1.1.352
has for description: USA lineage

B.1.1.353 lineage
type: B.1.1.353
type: NamedIndividual
label: B.1.1.353
has for description: UAE, Israel, Australia

B.1.1.354 lineage
type: B.1.1.354
type: NamedIndividual
label: B.1.1.354
has for description: Singapore, malaysia, India, UAE, England

B.1.1.355 lineage
type: B.1.1.355
type: NamedIndividual
label: B.1.1.355
has for description: England, Northern Europe

B.1.1.356 lineage
type: B.1.1.356
type: NamedIndividual
label: B.1.1.356
has for description: Texas

B.1.1.357 lineage
type: B.1.1.357
type: NamedIndividual
label: B.1.1.357
has for description: USA lineage

B.1.1.358 lineage
type: B.1.1.358
type: NamedIndividual
label: B.1.1.358
has for description: USA

B.1.1.359 lineage
type: B.1.1.359
type: NamedIndividual
label: B.1.1.359
has for description: Ghana and Denmark

B.1.1.360 lineage
type: B.1.1.360
type: NamedIndividual
label: B.1.1.360
has for description: Wales

B.1.1.361 lineage
type: B.1.1.361
type: NamedIndividual
label: B.1.1.361
has for description: England

B.1.1.362 lineage
type: B.1.1.362
type: NamedIndividual
label: B.1.1.362
has for description: USA

B.1.1.363 lineage
type: B.1.1.363
type: NamedIndividual
label: B.1.1.363
has for description: Wales

B.1.1.364 lineage
type: B.1.1.364
type: NamedIndividual
label: B.1.1.364
has for description: Russia, S Korea, England

B.1.1.365 lineage
type: B.1.1.365
type: NamedIndividual
label: B.1.1.365
has for description: England

B.1.1.366 lineage
type: B.1.1.366
type: NamedIndividual
label: B.1.1.366
has for description: UAE

B.1.1.367 lineage
type: B.1.1.367
type: NamedIndividual
label: B.1.1.367
has for description: USA

B.1.1.368 lineage
type: B.1.1.368
type: NamedIndividual
label: B.1.1.368
has for description: USA and Canada

B.1.1.369 lineage
type: B.1.1.369
type: NamedIndividual
label: B.1.1.369
has for description: England

B.1.1.370 lineage
type: B.1.1.370
type: NamedIndividual
label: B.1.1.370
has for description: England, USA, Russia, Germany

AT.1 lineage
type: AT.1
type: NamedIndividual
label: AT.1
has for description: Alias of B.1.1.370.1, Russia and Finland lineage from pango-designation issue #47
has for alias: B.1.1.370.1

B.1.1.371 lineage
type: B.1.1.371
type: NamedIndividual
label: B.1.1.371
has for description: Saudi Arabia to Romania to Western Europe, contains B.1.1.161 at the base

B.1.1.372 lineage
type: B.1.1.372
type: NamedIndividual
label: B.1.1.372
has for description: England

B.1.1.373 lineage
type: B.1.1.373
type: NamedIndividual
label: B.1.1.373
has for description: Russia, split from B.1.1.31

B.1.1.374 lineage
type: B.1.1.374
type: NamedIndividual
label: B.1.1.374
has for description: Balkans, Finland

B.1.1.375 lineage
type: B.1.1.375
type: NamedIndividual
label: B.1.1.375
has for description: Mozambique, was C.1.1

B.1.1.376 lineage
type: B.1.1.376
type: NamedIndividual
label: B.1.1.376
has for description: USA (California)

B.1.1.377 lineage
type: B.1.1.377
type: NamedIndividual
label: B.1.1.377
has for description: Denmark

B.1.1.378 lineage
type: B.1.1.378
type: NamedIndividual
label: B.1.1.378
has for description: UK and Brazil

B.1.1.379 lineage
type: B.1.1.379
type: NamedIndividual
label: B.1.1.379
has for description: Wales

B.1.1.380 lineage
type: B.1.1.380
type: NamedIndividual
label: B.1.1.380
has for description: USA

B.1.1.381 lineage
type: B.1.1.381
type: NamedIndividual
label: B.1.1.381
has for description: Peruvian

B.1.1.382 lineage
type: B.1.1.382
type: NamedIndividual
label: B.1.1.382
has for description: South African lineage

B.1.1.383 lineage
type: B.1.1.383
type: NamedIndividual
label: B.1.1.383
has for description: South African

B.1.1.384 lineage
type: B.1.1.384
type: NamedIndividual
label: B.1.1.384
has for description: Swiss Lineage

B.1.1.385 lineage
type: B.1.1.385
type: NamedIndividual
label: B.1.1.385
has for description: German Lineage

B.1.1.386 lineage
type: B.1.1.386
type: NamedIndividual
label: B.1.1.386
has for description: South African lineage

B.1.1.387 lineage
type: B.1.1.387
type: NamedIndividual
label: B.1.1.387
has for description: South African lineage

B.1.1.388 lineage
type: B.1.1.388
type: NamedIndividual
label: B.1.1.388
has for description: Columbian lineage

B.1.1.389 lineage
type: B.1.1.389
type: NamedIndividual
label: B.1.1.389
has for description: Costa Rica lineage

B.1.1.391 lineage
type: B.1.1.391
type: NamedIndividual
label: B.1.1.391
has for description: UAE lineage

B.1.1.392 lineage
type: B.1.1.392
type: NamedIndividual
label: B.1.1.392
has for description: USA lineage

B.1.1.393 lineage
type: B.1.1.393
type: NamedIndividual
label: B.1.1.393
has for description: Brazilian lineage

B.1.1.394 lineage
type: B.1.1.394
type: NamedIndividual
label: B.1.1.394
has for description: Portugal lineage

B.1.1.395 lineage
type: B.1.1.395
type: NamedIndividual
label: B.1.1.395
has for description: UK lineage, previously part of B.1.1.279

B.1.1.396 lineage
type: B.1.1.396
type: NamedIndividual
label: B.1.1.396
has for description: Russian lineage, some previously B.1.1.184

B.1.1.397 lineage
type: B.1.1.397
type: NamedIndividual
label: B.1.1.397
has for description: Predominantly Russia, includes some previous B.1.1.67 and H.1 sequences

B.1.1.398 lineage
type: B.1.1.398
type: NamedIndividual
label: B.1.1.398
has for description: USA/ Indonesian lineage

B.1.1.399 lineage
type: B.1.1.399
type: NamedIndividual
label: B.1.1.399
has for description: Irish lineage

B.1.1.400 lineage
type: B.1.1.400
type: NamedIndividual
label: B.1.1.400
has for description: Spain lineage

B.1.1.401 lineage
type: B.1.1.401
type: NamedIndividual
label: B.1.1.401
has for description: Portugal lineage

B.1.1.402 lineage
type: B.1.1.402
type: NamedIndividual
label: B.1.1.402
has for description: USA (Texas), split from B.1.1.177

B.1.1.403 lineage
type: B.1.1.403
type: NamedIndividual
label: B.1.1.403
has for description: USA

B.1.1.404 lineage
type: B.1.1.404
type: NamedIndividual
label: B.1.1.404
has for description: Ghana, Burkina Faso, Luxembourg, Germany

B.1.1.405 lineage
type: B.1.1.405
type: NamedIndividual
label: B.1.1.405
has for description: Germany lineage

AC.1 lineage
type: AC.1
type: NamedIndividual
label: AC.1
has for description: Alias of B.1.1.405.1, UK lineage
has for alias: B.1.1.405.1

B.1.1.406 lineage
type: B.1.1.406
type: NamedIndividual
label: B.1.1.406
has for description: Spain, UK, Italy

B.1.1.407 lineage
type: B.1.1.407
type: NamedIndividual
label: B.1.1.407
has for description: Mostly Russia

B.1.1.408 lineage
type: B.1.1.408
type: NamedIndividual
label: B.1.1.408
has for description: UK lineage

B.1.1.409 lineage
type: B.1.1.409
type: NamedIndividual
label: B.1.1.409
has for description: UAE, Israel, Saudi Arabia

B.1.1.410 lineage
type: B.1.1.410
type: NamedIndividual
label: B.1.1.410
has for description: Portugal lineage

B.1.1.411 lineage
type: B.1.1.411
type: NamedIndividual
label: B.1.1.411
has for description: Ecuador and US

B.1.1.412 lineage
type: B.1.1.412
type: NamedIndividual
label: B.1.1.412
has for description: South African lineage

B.1.1.413 lineage
type: B.1.1.413
type: NamedIndividual
label: B.1.1.413
has for description: Europe, Turkey, Iran

B.1.1.414 lineage
type: B.1.1.414
type: NamedIndividual
label: B.1.1.414
has for description: Indian lineage

B.1.1.415 lineage
type: B.1.1.415
type: NamedIndividual
label: B.1.1.415
has for description: Austrian lineage

B.1.1.416 lineage
type: B.1.1.416
type: NamedIndividual
label: B.1.1.416
has for description: USA lineage

B.1.1.417 lineage
type: B.1.1.417
type: NamedIndividual
label: B.1.1.417
has for description: Canada lineage

B.1.1.418 lineage
type: B.1.1.418
type: NamedIndividual
label: B.1.1.418
has for description: USA lineage

B.1.1.419 lineage
type: B.1.1.419
type: NamedIndividual
label: B.1.1.419
has for description: UK lineage, includes some formally B.1.1.193 sequences

B.1.1.420 lineage
type: B.1.1.420
type: NamedIndividual
label: B.1.1.420
has for description: Western Europe, USA

B.1.1.421 lineage
type: B.1.1.421
type: NamedIndividual
label: B.1.1.421
has for description: Portuguese lineage

B.1.1.422 lineage
type: B.1.1.422
type: NamedIndividual
label: B.1.1.422
has for description: Lithuanian lineage

B.1.1.423 lineage
type: B.1.1.423
type: NamedIndividual
label: B.1.1.423
has for description: USA lineage

B.1.1.424 lineage
type: B.1.1.424
type: NamedIndividual
label: B.1.1.424
has for description: Russia lineage, contains some formally B.1.1.167 sequences

B.1.1.425 lineage
type: B.1.1.425
type: NamedIndividual
label: B.1.1.425
has for description: England and Denmark

B.1.1.426 lineage
type: B.1.1.426
type: NamedIndividual
label: B.1.1.426
has for description: USA lineage

B.1.1.427 lineage
type: B.1.1.427
type: NamedIndividual
label: B.1.1.427
has for description: Russian Lineage

B.1.1.428 lineage
type: B.1.1.428
type: NamedIndividual
label: B.1.1.428
has for description: Switzerland and North Macedonia

B.1.1.429 lineage
type: B.1.1.429
type: NamedIndividual
label: B.1.1.429
has for description: Latvia and Finland

B.1.1.430 lineage
type: B.1.1.430
type: NamedIndividual
label: B.1.1.430
has for description: North Macedonia

B.1.1.431 lineage
type: B.1.1.431
type: NamedIndividual
label: B.1.1.431
has for description: Australia and Canada

B.1.1.432 lineage
type: B.1.1.432
type: NamedIndividual
label: B.1.1.432
has for description: US and Mexico

B.1.1.433 lineage
type: B.1.1.433
type: NamedIndividual
label: B.1.1.433
has for description: Denmark and Switzerland, some B.1.1.281

B.1.1.434 lineage
type: B.1.1.434
type: NamedIndividual
label: B.1.1.434
has for description: Mostly US lineage with some UK and Canada (was B.1.1.304)

B.1.1.435 lineage
type: B.1.1.435
type: NamedIndividual
label: B.1.1.435
has for description: Russian

B.1.1.436 lineage
type: B.1.1.436
type: NamedIndividual
label: B.1.1.436
has for description: Belgium lineage

B.1.1.437 lineage
type: B.1.1.437
type: NamedIndividual
label: B.1.1.437
has for description: USA lineage

B.1.1.438 lineage
type: B.1.1.438
type: NamedIndividual
label: B.1.1.438
has for description: Swedish lineage

B.1.1.440 lineage
type: B.1.1.440
type: NamedIndividual
label: B.1.1.440
has for description: US and Mexico

B.1.1.441 lineage
type: B.1.1.441
type: NamedIndividual
label: B.1.1.441
has for description: USA lineage

B.1.1.442 lineage
type: B.1.1.442
type: NamedIndividual
label: B.1.1.442
has for description: Argentinian

B.1.1.444 lineage
type: B.1.1.444
type: NamedIndividual
label: B.1.1.444
has for description: South African (was B.1.1.117)

B.1.1.445 lineage
type: B.1.1.445
type: NamedIndividual
label: B.1.1.445
has for description: Switzerland lineage

B.1.1.446 lineage
type: B.1.1.446
type: NamedIndividual
label: B.1.1.446
has for description: Sweden lineage

B.1.1.447 lineage
type: B.1.1.447
type: NamedIndividual
label: B.1.1.447
has for description: USA lineage

B.1.1.448 lineage
type: B.1.1.448
type: NamedIndividual
label: B.1.1.448
has for description: South African (was B.1.1.54)

B.1.1.449 lineage
type: B.1.1.449
type: NamedIndividual
label: B.1.1.449
has for description: Russia lineage

B.1.1.450 lineage
type: B.1.1.450
type: NamedIndividual
label: B.1.1.450
has for description: USA lineage

B.1.1.451 lineage
type: B.1.1.451
type: NamedIndividual
label: B.1.1.451
has for description: Norway lineage

B.1.1.452 lineage
type: B.1.1.452
type: NamedIndividual
label: B.1.1.452
has for description: Russia lineage

B.1.1.453 lineage
type: B.1.1.453
type: NamedIndividual
label: B.1.1.453
has for description: US

B.1.1.456 lineage
type: B.1.1.456
type: NamedIndividual
label: B.1.1.456
has for description: South African

B.1.1.458 lineage
type: B.1.1.458
type: NamedIndividual
label: B.1.1.458
has for description: Swedish lineage

B.1.1.459 lineage
type: B.1.1.459
type: NamedIndividual
label: B.1.1.459
has for description: South African lineage (some were part of Belgian lineage B.1.1.75

B.1.1.461 lineage
type: B.1.1.461
type: NamedIndividual
label: B.1.1.461
has for description: US TX lineage

B.1.1.462 lineage
type: B.1.1.462
type: NamedIndividual
label: B.1.1.462
has for description: United Arab Emirates

B.1.1.463 lineage
type: B.1.1.463
type: NamedIndividual
label: B.1.1.463
has for description: US CA lineage

B.1.1.464 lineage
type: B.1.1.464
type: NamedIndividual
label: B.1.1.464
has for description: US lineage

AW.1 lineage
type: AW.1
type: NamedIndividual
label: AW.1
has for description: Alias of B.1.1.464.1, Canadian lineage
has for alias: B.1.1.464.1

B.1.1.465 lineage
type: B.1.1.465
type: NamedIndividual
label: B.1.1.465
has for description: Japanese lineage

B.1.1.466 lineage
type: B.1.1.466
type: NamedIndividual
label: B.1.1.466
has for description: Gambian lineage

B.1.1.467 lineage
type: B.1.1.467
type: NamedIndividual
label: B.1.1.467
has for description: US lineage (NY)

B.1.1.480 lineage
type: B.1.1.480
type: NamedIndividual
label: B.1.1.480
has for description: US Lineage

B.1.1.481 lineage
type: B.1.1.481
type: NamedIndividual
label: B.1.1.481
has for description: Russian Lineage

B.1.1.482 lineage
type: B.1.1.482
type: NamedIndividual
label: B.1.1.482
has for description: US Lineage

AV.1 lineage
type: AV.1
type: NamedIndividual
label: AV.1
has for description: Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from pango-designation issue #73
has for alias: B.1.1.482.1

B.1.1.483 lineage
type: B.1.1.483
type: NamedIndividual
label: B.1.1.483
has for description: Belgian lineage

B.1.1.484 lineage
type: B.1.1.484
type: NamedIndividual
label: B.1.1.484
has for description: Nigerian Lineage

B.1.1.485 lineage
type: B.1.1.485
type: NamedIndividual
label: B.1.1.485
has for description: Ghanaian Lineage

B.1.1.486 lineage
type: B.1.1.486
type: NamedIndividual
label: B.1.1.486
has for description: US Lineage

B.1.1.487 lineage
type: B.1.1.487
type: NamedIndividual
label: B.1.1.487
has for description: UK and Nigerian Lineage

B.1.1.500 lineage
type: B.1.1.500
type: NamedIndividual
label: B.1.1.500
has for description: UAE lineage

B.1.1.506 lineage
type: B.1.1.506
type: NamedIndividual
label: B.1.1.506
has for description: Mainly Russian

B.1.1.507 lineage
type: B.1.1.507
type: NamedIndividual
label: B.1.1.507
has for description: South African Lineage (was B.1.1.254)

B.1.1.512 lineage
type: B.1.1.512
type: NamedIndividual
label: B.1.1.512
has for description: US/Mexico

B.1.1.513 lineage
type: B.1.1.513
type: NamedIndividual
label: B.1.1.513
has for description: US lineage (NY)

B.1.1.514 lineage
type: B.1.1.514
type: NamedIndividual
label: B.1.1.514
has for description: US lineage

B.1.1.515 lineage
type: B.1.1.515
type: NamedIndividual
label: B.1.1.515
has for description: German lineage

B.1.1.516 lineage
type: B.1.1.516
type: NamedIndividual
label: B.1.1.516
has for description: Costa Rica lineage

B.1.1.517 lineage
type: B.1.1.517
type: NamedIndividual
label: B.1.1.517
has for description: USA lineage

B.1.1.518 lineage
type: B.1.1.518
type: NamedIndividual
label: B.1.1.518
has for description: USA/ Mexico lineage

B.1.1.519 lineage
type: B.1.1.519
type: NamedIndividual
label: B.1.1.519
has for description: USA/ Mexico lineage

B.1.1.521 lineage
type: B.1.1.521
type: NamedIndividual
label: B.1.1.521
has for description: European lineage

B.1.1.522 lineage
type: B.1.1.522
type: NamedIndividual
label: B.1.1.522
has for description: Belgium lineage

B.1.1.523 lineage
type: B.1.1.523
type: NamedIndividual
label: B.1.1.523
has for description: Lineage in multiple countries, predominantly Russia, from pango-designation issue #69

B.1.1.524 lineage
type: B.1.1.524
type: NamedIndividual
label: B.1.1.524
has for description: Predominantly Russia lineage, from pango-designation issue #85

B.1.1.525 lineage
type: B.1.1.525
type: NamedIndividual
label: B.1.1.525
has for description: Predominantly Russia lineage, from pango-designation issue #85

B.1.1.526 lineage
type: B.1.1.526
type: NamedIndividual
label: B.1.1.526
has for description: India lineage, from pango-designation issue #91, previously designated B.1.624

B.1.1.528 lineage
type: B.1.1.528
type: NamedIndividual
label: B.1.1.528
has for description: South Africa lineage, from pango-designation issue #177

B.1.1.529 lineage
type: B.1.1.529
type: NamedIndividual
label: B.1.1.529
has for description: South Africa and Botswana lineage, from pango-designation issue #343

s373p
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s373p

a63t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: a63t

q954h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: q954h

t478k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.1.529 lineage
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: t478k

BA.1 lineage
type: BA.1
type: NamedIndividual
label: BA.1
has for description: Alias of B.1.1.529.1, from pango-designation issue #361
has for alias: B.1.1.529.1

s2083i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: XL lineage
mutation name: s2083i

g142d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
mutation name: g142d

s371l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: s371l

i3758v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: i3758v

a2710t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: a2710t

t547k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: t547k

t9i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: t9i

n969k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: n969k

n856k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: n856k

l981f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: l981f

p3395h
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: p3395h

k856r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: XL lineage
mutation name: k856r

a67v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: a67v

del2084/2084
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: XL lineage
mutation name: del2084/2084

del3674/3676
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: del3674/3676

q19e
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: q19e

i1566v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: i1566v

del143/145
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: del143/145

del31/33
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BF.5 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: del31/33

g339d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: g339d

d3g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: d3g

e484a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: e484a

n764k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: n764k

q493r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.9 lineage
has for lineage: XL lineage
mutation name: q493r

s375f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s375f

y505h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: y505h

g496s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
mutation name: g496s

q498r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1 lineage
has for lineage: BA.1.1 lineage
has for lineage: BA.1.9 lineage
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: q498r

BA.1.1 lineage
type: BA.1.1
type: NamedIndividual
label: BA.1.1
has for description: Alias of B.1.1.529.1.1, from pango-designation issue #360
has for alias: B.1.1.529.1.1

g446s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.1.1 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: g446s

BA.1.1.1 lineage
type: BA.1.1.1
type: NamedIndividual
label: BA.1.1.1
has for description: Alias of B.1.1.529.1.1.1, European lineage
has for alias: B.1.1.529.1.1.1

BC.1 lineage
type: BC.1
type: NamedIndividual
label: BC.1
has for description: Alias of B.1.1.529.1.1.1.1, Japan lineage
has for alias: B.1.1.529.1.1.1.1

BC.2 lineage
type: BC.2
type: NamedIndividual
label: BC.2
has for description: Alias of B.1.1.529.1.1.1.2, Peru lineage, from pango-designation issue #570
has for alias: B.1.1.529.1.1.1.2

BA.1.1.2 lineage
type: BA.1.1.2
type: NamedIndividual
label: BA.1.1.2
has for description: Alias of B.1.1.529.1.1.2, Japan lineage
has for alias: B.1.1.529.1.1.2

BA.1.1.3 lineage
type: BA.1.1.3
type: NamedIndividual
label: BA.1.1.3
has for description: Alias of B.1.1.529.1.1.3, Switzerland lineage
has for alias: B.1.1.529.1.1.3

BA.1.1.4 lineage
type: BA.1.1.4
type: NamedIndividual
label: BA.1.1.4
has for description: Alias of B.1.1.529.1.1.4, UK lineage
has for alias: B.1.1.529.1.1.4

BA.1.1.5 lineage
type: BA.1.1.5
type: NamedIndividual
label: BA.1.1.5
has for description: Alias of B.1.1.529.1.1.5, South Korea lineage
has for alias: B.1.1.529.1.1.5

BA.1.1.6 lineage
type: BA.1.1.6
type: NamedIndividual
label: BA.1.1.6
has for description: Alias of B.1.1.529.1.1.6, Canada lineage
has for alias: B.1.1.529.1.1.6

BA.1.1.7 lineage
type: BA.1.1.7
type: NamedIndividual
label: BA.1.1.7
has for description: Alias of B.1.1.529.1.1.7, lineage in India and other countries
has for alias: B.1.1.529.1.1.7

BA.1.1.8 lineage
type: BA.1.1.8
type: NamedIndividual
label: BA.1.1.8
has for description: Alias of B.1.1.529.1.1.8, USA lineage
has for alias: B.1.1.529.1.1.8

BA.1.1.9 lineage
type: BA.1.1.9
type: NamedIndividual
label: BA.1.1.9
has for description: Alias of B.1.1.529.1.1.9, New Zealand lineage
has for alias: B.1.1.529.1.1.9

BA.1.1.10 lineage
type: BA.1.1.10
type: NamedIndividual
label: BA.1.1.10
has for description: Alias of B.1.1.529.1.1.10, Canada lineage
has for alias: B.1.1.529.1.1.10

BA.1.1.11 lineage
type: BA.1.1.11
type: NamedIndividual
label: BA.1.1.11
has for description: Alias of B.1.1.529.1.1.11, European lineage
has for alias: B.1.1.529.1.1.11

BA.1.1.12 lineage
type: BA.1.1.12
type: NamedIndividual
label: BA.1.1.12
has for description: Alias of B.1.1.529.1.1.12, UK lineage
has for alias: B.1.1.529.1.1.12

BA.1.1.13 lineage
type: BA.1.1.13
type: NamedIndividual
label: BA.1.1.13
has for description: Alias of B.1.1.529.1.1.13, UK lineage
has for alias: B.1.1.529.1.1.13

BA.1.1.14 lineage
type: BA.1.1.14
type: NamedIndividual
label: BA.1.1.14
has for description: Alias of B.1.1.529.1.1.14, European lineage
has for alias: B.1.1.529.1.1.14

BA.1.1.15 lineage
type: BA.1.1.15
type: NamedIndividual
label: BA.1.1.15
has for description: Alias of B.1.1.529.1.1.15, Europe and Australia lineage
has for alias: B.1.1.529.1.1.15

BA.1.1.16 lineage
type: BA.1.1.16
type: NamedIndividual
label: BA.1.1.16
has for description: Alias of B.1.1.529.1.1.16, Canada and USA lineage
has for alias: B.1.1.529.1.1.16

BA.1.1.17 lineage
type: BA.1.1.17
type: NamedIndividual
label: BA.1.1.17
has for description: Alias of B.1.1.529.1.1.17, USA lineage, from pango-designation issue #452
has for alias: B.1.1.529.1.1.17

BA.1.1.18 lineage
type: BA.1.1.18
type: NamedIndividual
label: BA.1.1.18
has for description: Alias of B.1.1.529.1.1.18, USA lineage
has for alias: B.1.1.529.1.1.18

BA.1.2 lineage
type: BA.1.2
type: NamedIndividual
label: BA.1.2
has for description: Alias of B.1.1.529.1.2, Mayotte and Reunion lineage
has for alias: B.1.1.529.1.2

BA.1.3 lineage
type: BA.1.3
type: NamedIndividual
label: BA.1.3
has for description: Alias of B.1.1.529.1.3, Canada lineage
has for alias: B.1.1.529.1.3

BA.1.4 lineage
type: BA.1.4
type: NamedIndividual
label: BA.1.4
has for description: Alias of B.1.1.529.1.4, France lineage
has for alias: B.1.1.529.1.4

BA.1.5 lineage
type: BA.1.5
type: NamedIndividual
label: BA.1.5
has for description: Alias of B.1.1.529.1.5, UK lineage
has for alias: B.1.1.529.1.5

BA.1.6 lineage
type: BA.1.6
type: NamedIndividual
label: BA.1.6
has for description: Alias of B.1.1.529.1.6, Canada and Sint Maarten lineage
has for alias: B.1.1.529.1.6

BA.1.7 lineage
type: BA.1.7
type: NamedIndividual
label: BA.1.7
has for description: Alias of B.1.1.529.1.7, UK lineage
has for alias: B.1.1.529.1.7

BA.1.8 lineage
type: BA.1.8
type: NamedIndividual
label: BA.1.8
has for description: Alias of B.1.1.529.1.8, European lineage
has for alias: B.1.1.529.1.8

BA.1.9 lineage
type: BA.1.9
type: NamedIndividual
label: BA.1.9
has for description: Alias of B.1.1.529.1.9, Brazil lineage
has for alias: B.1.1.529.1.9

BA.1.10 lineage
type: BA.1.10
type: NamedIndividual
label: BA.1.10
has for description: Alias of B.1.1.529.1.10, UK lineage
has for alias: B.1.1.529.1.10

BA.1.12 lineage
type: BA.1.12
type: NamedIndividual
label: BA.1.12
has for description: Alias of B.1.1.529.1.12, UK lineage
has for alias: B.1.1.529.1.12

BA.1.13 lineage
type: BA.1.13
type: NamedIndividual
label: BA.1.13
has for description: Alias of B.1.1.529.1.13, European lineage
has for alias: B.1.1.529.1.13

BA.1.13.1 lineage
type: BA.1.13.1
type: NamedIndividual
label: BA.1.13.1
has for description: Alias of B.1.1.529.1.13.1, Indonesia lineage
has for alias: B.1.1.529.1.13.1

BA.1.14 lineage
type: BA.1.14
type: NamedIndividual
label: BA.1.14
has for description: Alias of B.1.1.529.1.14, lineage in Brazil and other countries
has for alias: B.1.1.529.1.14

BA.1.14.1 lineage
type: BA.1.14.1
type: NamedIndividual
label: BA.1.14.1
has for description: Alias of B.1.1.529.1.14.1, Brazil lineage, from pango-designation issue #506
has for alias: B.1.1.529.1.14.1

BA.1.14.2 lineage
type: BA.1.14.2
type: NamedIndividual
label: BA.1.14.2
has for description: Alias of B.1.1.529.1.14.2, Brazil lineage
has for alias: B.1.1.529.1.14.2

BA.1.15 lineage
type: BA.1.15
type: NamedIndividual
label: BA.1.15
has for description: Alias of B.1.1.529.1.15, lineage in USA and other countries
has for alias: B.1.1.529.1.15

BA.1.15.1 lineage
type: BA.1.15.1
type: NamedIndividual
label: BA.1.15.1
has for description: Alias of B.1.1.529.1.15.1, UK lineage
has for alias: B.1.1.529.1.15.1

BA.1.15.2 lineage
type: BA.1.15.2
type: NamedIndividual
label: BA.1.15.2
has for description: Alias of B.1.1.529.1.15.2, USA lineage, from pango-designation issue #508
has for alias: B.1.1.529.1.15.2

BA.1.15.3 lineage
type: BA.1.15.3
type: NamedIndividual
label: BA.1.15.3
has for description: Alias of B.1.1.529.1.15.3, Peru lineage, from pango-designation issue #573
has for alias: B.1.1.529.1.15.3

BA.1.16 lineage
type: BA.1.16
type: NamedIndividual
label: BA.1.16
has for description: Alias of B.1.1.529.1.16, UK lineage
has for alias: B.1.1.529.1.16

BA.1.16.1 lineage
type: BA.1.16.1
type: NamedIndividual
label: BA.1.16.1
has for description: Alias of B.1.1.529.1.16.1, Thailand, Cambodia and Indonesia lineage
has for alias: B.1.1.529.1.16.1

BA.1.16.2 lineage
type: BA.1.16.2
type: NamedIndividual
label: BA.1.16.2
has for description: Alias of B.1.1.529.1.16.2, Greece lineage
has for alias: B.1.1.529.1.16.2

BA.1.17 lineage
type: BA.1.17
type: NamedIndividual
label: BA.1.17
has for description: Alias of B.1.1.529.1.17, European lineage
has for alias: B.1.1.529.1.17

BA.1.17.1 lineage
type: BA.1.17.1
type: NamedIndividual
label: BA.1.17.1
has for description: Alias of B.1.1.529.1.17.1, Australia lineage
has for alias: B.1.1.529.1.17.1

BA.1.17.2 lineage
type: BA.1.17.2
type: NamedIndividual
label: BA.1.17.2
has for description: Alias of B.1.1.529.1.17.2, lineage from pango-designation issue #462
has for alias: B.1.1.529.1.17.2

BD.1 lineage
type: BD.1
type: NamedIndividual
label: BD.1
has for description: Alias of B.1.1.529.1.17.2.1, UK lineage, from pango-designation issue #461
has for alias: B.1.1.529.1.17.2.1

BA.1.18 lineage
type: BA.1.18
type: NamedIndividual
label: BA.1.18
has for description: Alias of B.1.1.529.1.18, Europe and North America lineage, from pango-designation issue #474
has for alias: B.1.1.529.1.18

BA.1.19 lineage
type: BA.1.19
type: NamedIndividual
label: BA.1.19
has for description: Alias of B.1.1.529.1.19, Europe lineage
has for alias: B.1.1.529.1.19

BA.1.20 lineage
type: BA.1.20
type: NamedIndividual
label: BA.1.20
has for description: Alias of B.1.1.529.1.20, USA lineage, from pango-designation issue #375
has for alias: B.1.1.529.1.20

BA.1.21 lineage
type: BA.1.21
type: NamedIndividual
label: BA.1.21
has for description: Alias of B.1.1.529.1.21, lineage from pango-designation issue #505
has for alias: B.1.1.529.1.21

BA.1.21.1 lineage
type: BA.1.21.1
type: NamedIndividual
label: BA.1.21.1
has for description: Alias of B.1.1.529.1.21.1, Italy lineage, from pango-designation issue #409
has for alias: B.1.1.529.1.21.1

BA.1.22 lineage
type: BA.1.22
type: NamedIndividual
label: BA.1.22
has for description: Alias of B.1.1.529.1.22, Peru lineage from pango-designation issue #529
has for alias: B.1.1.529.1.22

BA.1.23 lineage
type: BA.1.23
type: NamedIndividual
label: BA.1.23
has for description: Alias of B.1.1.529.1.23, mainly found in USA, from pango-designation issue #663
has for alias: B.1.1.529.1.23

BA.1.24 lineage
type: BA.1.24
type: NamedIndividual
label: BA.1.24
has for description: Alias of B.1.1.529.1.24, found in Spain, from pango-designation issue #666
has for alias: B.1.1.529.1.24

BA.2 lineage
type: BA.2
type: NamedIndividual
label: BA.2
has for description: Alias of B.1.1.529.2, from pango-designation issue #361
has for alias: B.1.1.529.2

d61l
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: d61l

l24s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: l24s

r1315c
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: r1315c

t223i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: t223i

g1307s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: g1307s

t842i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: t842i

s135r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s135r

v213g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: v213g

t19i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: t19i

s413r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s413r

t3090i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: t3090i

d405n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: d405n

l3201f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: XL lineage
mutation name: l3201f

t376a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: t376a

s371f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s371f

del25/27
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: del25/27

k417n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: B.1.351 lineage
has for lineage: AY.1 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: k417n

t2163i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
mutation name: t2163i

r408s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: r408s

n440k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2 lineage
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.9 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XL lineage
has for lineage: XAS lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: n440k

BA.2.1 lineage
type: BA.2.1
type: NamedIndividual
label: BA.2.1
has for description: Alias of B.1.1.529.2.1, UK lineage
has for alias: B.1.1.529.2.1

BA.2.2 lineage
type: BA.2.2
type: NamedIndividual
label: BA.2.2
has for description: Alias of B.1.1.529.2.2, Hong Kong lineage
has for alias: B.1.1.529.2.2

BA.2.2.1 lineage
type: BA.2.2.1
type: NamedIndividual
label: BA.2.2.1
has for description: Alias of B.1.1.529.2.2.1, China lineage, from pango-designation issue #675
has for alias: B.1.1.529.2.2.1

BA.2.3 lineage
type: BA.2.3
type: NamedIndividual
label: BA.2.3
has for description: Alias of B.1.1.529.2.3, lineage in Philippines and other countries
has for alias: B.1.1.529.2.3

l140f
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: l140f

a2909v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3 lineage
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: a2909v

BA.2.3.1 lineage
type: BA.2.3.1
type: NamedIndividual
label: BA.2.3.1
has for description: Alias of B.1.1.529.2.3.1, Japan lineage, from pango-designation issue #495
has for alias: B.1.1.529.2.3.1

BA.2.3.2 lineage
type: BA.2.3.2
type: NamedIndividual
label: BA.2.3.2
has for description: Alias of B.1.1.529.2.3.2, Vietnam and Japan lineage
has for alias: B.1.1.529.2.3.2

BS.1 lineage
type: BS.1
type: NamedIndividual
label: BS.1
has for description: Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from pango-designation issue #1052
has for alias: B.1.1.529.2.3.2.1

BS.1.1 lineage
type: BS.1.1
type: NamedIndividual
label: BS.1.1
has for description: Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from pango-designation issue #1097
has for alias: B.1.1.529.2.3.2.1.1

BS.1.2 lineage
type: BS.1.2
type: NamedIndividual
label: BS.1.2
has for description: Alias of B.1.1.529.2.3.2.1.2, Vietnam lineage, defined by S:T430I
has for alias: B.1.1.529.2.3.2.1.2

BA.2.3.4 lineage
type: BA.2.3.4
type: NamedIndividual
label: BA.2.3.4
has for description: Alias of B.1.1.529.2.3.4, Canada lineage
has for alias: B.1.1.529.2.3.4

BA.2.3.5 lineage
type: BA.2.3.5
type: NamedIndividual
label: BA.2.3.5
has for description: Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from pango-designation issue #627
has for alias: B.1.1.529.2.3.5

BA.2.3.6 lineage
type: BA.2.3.6
type: NamedIndividual
label: BA.2.3.6
has for description: Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from pango-designation issue #633
has for alias: B.1.1.529.2.3.6

BA.2.3.7 lineage
type: BA.2.3.7
type: NamedIndividual
label: BA.2.3.7
has for description: Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from pango-designation issue #643
has for alias: B.1.1.529.2.3.7

BA.2.3.8 lineage
type: BA.2.3.8
type: NamedIndividual
label: BA.2.3.8
has for description: Alias of B.1.1.529.2.3.8, South Korea lineage
has for alias: B.1.1.529.2.3.8

BA.2.3.9 lineage
type: BA.2.3.9
type: NamedIndividual
label: BA.2.3.9
has for description: Alias of B.1.1.529.2.3.9, lineage in Netherlands and other countries
has for alias: B.1.1.529.2.3.9

BA.2.3.10 lineage
type: BA.2.3.10
type: NamedIndividual
label: BA.2.3.10
has for description: Alias of B.1.1.529.2.3.10, Canada and USA lineage
has for alias: B.1.1.529.2.3.10

BA.2.3.11 lineage
type: BA.2.3.11
type: NamedIndividual
label: BA.2.3.11
has for description: Alias of B.1.1.529.2.3.11, Japan lineage
has for alias: B.1.1.529.2.3.11

BA.2.3.12 lineage
type: BA.2.3.12
type: NamedIndividual
label: BA.2.3.12
has for description: Alias of B.1.1.529.2.3.12, South Korea lineage
has for alias: B.1.1.529.2.3.12

BA.2.3.13 lineage
type: BA.2.3.13
type: NamedIndividual
label: BA.2.3.13
has for description: Alias of B.1.1.529.2.3.13, Japan lineage
has for alias: B.1.1.529.2.3.13

BA.2.3.14 lineage
type: BA.2.3.14
type: NamedIndividual
label: BA.2.3.14
has for description: Alias of B.1.1.529.2.3.14, South Korea lineage
has for alias: B.1.1.529.2.3.14

BA.2.3.15 lineage
type: BA.2.3.15
type: NamedIndividual
label: BA.2.3.15
has for description: Alias of B.1.1.529.2.3.15, Italy and Spain lineage
has for alias: B.1.1.529.2.3.15

BA.2.3.16 lineage
type: BA.2.3.16
type: NamedIndividual
label: BA.2.3.16
has for description: Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from pango-designation issue #524
has for alias: B.1.1.529.2.3.16

BP.1 lineage
type: BP.1
type: NamedIndividual
label: BP.1
has for description: Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from pango-designation issue #1009
has for alias: B.1.1.529.2.3.16.1

BA.2.3.17 lineage
type: BA.2.3.17
type: NamedIndividual
label: BA.2.3.17
has for description: Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from pango-designation issue #677
has for alias: B.1.1.529.2.3.17

BA.2.3.18 lineage
type: BA.2.3.18
type: NamedIndividual
label: BA.2.3.18
has for description: Alias of B.1.1.529.2.3.18, Japan lineage, from pango-designation issue #687
has for alias: B.1.1.529.2.3.18

BA.2.3.19 lineage
type: BA.2.3.19
type: NamedIndividual
label: BA.2.3.19
has for description: Alias of B.1.1.529.2.3.19, found Brunei, from pango-designation issue #824
has for alias: B.1.1.529.2.3.19

BA.2.3.20 lineage
type: BA.2.3.20
type: NamedIndividual
label: BA.2.3.20
has for description: Alias of B.1.1.529.2.3.20, found globally, unclear origin, from pango-designation issue #1013
has for alias: B.1.1.529.2.3.20

e484r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: e484r

i1714t
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: i1714t

t2174i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: t2174i

t2648i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: t2648i

m2169v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: m2169v

t727i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: t727i

t1404m
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: t1404m

g257d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: g257d

k444r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: CR.1 lineage
mutation name: k444r

n450d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: n450d

q3922r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BF.7.13.2 lineage
mutation name: q3922r

m153t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: m153t

l452m
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: l452m

n460k
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: DL.1 lineage
has for lineage: CK.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: n460k

h245n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.3.20 lineage
has for lineage: CM.2 lineage
mutation name: h245n

CM.1 lineage
type: CM.1
type: NamedIndividual
label: CM.1
has for description: Alias of B.1.1.529.2.3.20.1, S:N17S, from pango-designation issue #1129
has for alias: B.1.1.529.2.3.20.1

CM.2 lineage
type: CM.2
type: NamedIndividual
label: CM.2
has for description: Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F
has for alias: B.1.1.529.2.3.20.2

s2103f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: CM.2 lineage
has for lineage: BN.1.5 lineage
has for lineage: BF.7.13.2 lineage
mutation name: s2103f

CM.2.1 lineage
type: CM.2.1
type: NamedIndividual
label: CM.2.1
has for description: Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, issue #1356
has for alias: B.1.1.529.2.3.20.2.1

CM.3 lineage
type: CM.3
type: NamedIndividual
label: CM.3
has for description: Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D
has for alias: B.1.1.529.2.3.20.3

CM.4 lineage
type: CM.4
type: NamedIndividual
label: CM.4
has for description: Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G
has for alias: B.1.1.529.2.3.20.4

CM.4.1 lineage
type: CM.4.1
type: NamedIndividual
label: CM.4.1
has for description: Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA
has for alias: B.1.1.529.2.3.20.4.1

CM.5 lineage
type: CM.5
type: NamedIndividual
label: CM.5
has for description: Alias of B.1.1.529.2.3.20.5, global, 10802T
has for alias: B.1.1.529.2.3.20.5

CM.5.1 lineage
type: CM.5.1
type: NamedIndividual
label: CM.5.1
has for description: Alias of B.1.1.529.2.3.20.5.1, S:Q675R
has for alias: B.1.1.529.2.3.20.5.1

CM.5.2 lineage
type: CM.5.2
type: NamedIndividual
label: CM.5.2
has for description: Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from issue #1386
has for alias: B.1.1.529.2.3.20.5.2

CM.6 lineage
type: CM.6
type: NamedIndividual
label: CM.6
has for description: Alias of B.1.1.529.2.3.20.6, global, ORF1a:G30A
has for alias: B.1.1.529.2.3.20.6

CM.6.1 lineage
type: CM.6.1
type: NamedIndividual
label: CM.6.1
has for description: Alias of B.1.1.529.2.3.20.6.1, S:A348S
has for alias: B.1.1.529.2.3.20.6.1

CM.7 lineage
type: CM.7
type: NamedIndividual
label: CM.7
has for description: Alias of B.1.1.529.2.3.20.7, Japan/Singapore, S:F486S
has for alias: B.1.1.529.2.3.20.7

CM.8 lineage
type: CM.8
type: NamedIndividual
label: CM.8
has for description: Alias of B.1.1.529.2.3.20.8, S:G446S
has for alias: B.1.1.529.2.3.20.8

CM.8.1 lineage
type: CM.8.1
type: NamedIndividual
label: CM.8.1
has for description: Alias of B.1.1.529.2.3.20.8.1, Australia/England, S:F486S
has for alias: B.1.1.529.2.3.20.8.1

CM.9 lineage
type: CM.9
type: NamedIndividual
label: CM.9
has for description: Alias of B.1.1.529.2.3.20.9, USA/Canada/Israel, S:S256L
has for alias: B.1.1.529.2.3.20.9

CM.10 lineage
type: CM.10
type: NamedIndividual
label: CM.10
has for description: Alias of B.1.1.529.2.3.20.10, USA/South Korea/Singapore, S:K478T reversion, S:V445A
has for alias: B.1.1.529.2.3.20.10

CM.11 lineage
type: CM.11
type: NamedIndividual
label: CM.11
has for description: Alias of B.1.1.529.2.3.20.11, USA/South Korea, S:R346T, S:F486S, from #1509
has for alias: B.1.1.529.2.3.20.11

CM.12 lineage
type: CM.12
type: NamedIndividual
label: CM.12
has for description: Alias of B.1.1.529.2.3.20.12, Hong Kong, US, Australia, Japan, ORF8:T12I, from #1481
has for alias: B.1.1.529.2.3.20.12

BA.2.3.21 lineage
type: BA.2.3.21
type: NamedIndividual
label: BA.2.3.21
has for description: Alias of B.1.1.529.2.3.21, Philippines, S:P9L and 493 reversion
has for alias: B.1.1.529.2.3.21

DD.1 lineage
type: DD.1
type: NamedIndividual
label: DD.1
has for description: Alias of B.1.1.529.2.3.21.1, Philippines/Australia, Δ69-70, Δ144, V213E, G339N, R346T, Y449N, N460K, N481K, Q493L, K1205N, from #1287
has for alias: B.1.1.529.2.3.21.1

BA.2.3.22 lineage
type: BA.2.3.22
type: NamedIndividual
label: BA.2.3.22
has for description: Alias of B.1.1.529.2.3.22, Philippines/Qatar/Germany, Δ69-70, W152L, N211-, L212I, S255F, R346T, K417T, F490A, A942S from #1462
has for alias: B.1.1.529.2.3.22

BA.2.4 lineage
type: BA.2.4
type: NamedIndividual
label: BA.2.4
has for description: Alias of B.1.1.529.2.4, Singapore lineage
has for alias: B.1.1.529.2.4

BA.2.5 lineage
type: BA.2.5
type: NamedIndividual
label: BA.2.5
has for description: Alias of B.1.1.529.2.5, lineage in Portugal and other countries
has for alias: B.1.1.529.2.5

BA.2.6 lineage
type: BA.2.6
type: NamedIndividual
label: BA.2.6
has for description: Alias of B.1.1.529.2.6, lineage in France and other countries
has for alias: B.1.1.529.2.6

BA.2.7 lineage
type: BA.2.7
type: NamedIndividual
label: BA.2.7
has for description: Alias of B.1.1.529.2.7, USA lineage
has for alias: B.1.1.529.2.7

BA.2.8 lineage
type: BA.2.8
type: NamedIndividual
label: BA.2.8
has for description: Alias of B.1.1.529.2.8, UK lineage, from pango-designation issue #486
has for alias: B.1.1.529.2.8

BA.2.9 lineage
type: BA.2.9
type: NamedIndividual
label: BA.2.9
has for description: Alias of B.1.1.529.2.9, European lineage, from pango-designation issue #432
has for alias: B.1.1.529.2.9

BA.2.9.1 lineage
type: BA.2.9.1
type: NamedIndividual
label: BA.2.9.1
has for description: Alias of B.1.1.529.2.9.1, UK lineage, from pango-designation issue #530
has for alias: B.1.1.529.2.9.1

BA.2.9.2 lineage
type: BA.2.9.2
type: NamedIndividual
label: BA.2.9.2
has for description: Alias of B.1.1.529.2.9.2, USA lineage
has for alias: B.1.1.529.2.9.2

BA.2.9.3 lineage
type: BA.2.9.3
type: NamedIndividual
label: BA.2.9.3
has for description: Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from pango-designation issue #630
has for alias: B.1.1.529.2.9.3

BA.2.9.4 lineage
type: BA.2.9.4
type: NamedIndividual
label: BA.2.9.4
has for description: Alias of B.1.1.529.2.9.4, mainly found in France, from pango-designation issue #635
has for alias: B.1.1.529.2.9.4

BA.2.9.5 lineage
type: BA.2.9.5
type: NamedIndividual
label: BA.2.9.5
has for description: Alias of B.1.1.529.2.9.5, Thailand lineage
has for alias: B.1.1.529.2.9.5

BA.2.9.6 lineage
type: BA.2.9.6
type: NamedIndividual
label: BA.2.9.6
has for description: Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from pango-designation issue #671
has for alias: B.1.1.529.2.9.6

BA.2.9.7 lineage
type: BA.2.9.7
type: NamedIndividual
label: BA.2.9.7
has for description: Alias of B.1.1.529.2.9.7, found mainly in USA, from pango-designation issue #864
has for alias: B.1.1.529.2.9.7

BA.2.10 lineage
type: BA.2.10
type: NamedIndividual
label: BA.2.10
has for description: Alias of B.1.1.529.2.10, lineage from pango-designation issue #496
has for alias: B.1.1.529.2.10

BA.2.10.1 lineage
type: BA.2.10.1
type: NamedIndividual
label: BA.2.10.1
has for description: Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries
has for alias: B.1.1.529.2.10.1

BJ.1 lineage
type: BJ.1
type: NamedIndividual
label: BJ.1
has for description: Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from pango-designation issue #915
has for alias: B.1.1.529.2.10.1.1

BA.2.10.2 lineage
type: BA.2.10.2
type: NamedIndividual
label: BA.2.10.2
has for description: Alias of B.1.1.529.2.10.2, mainly found in Japan, from pango-designation issue #569
has for alias: B.1.1.529.2.10.2

BA.2.10.3 lineage
type: BA.2.10.3
type: NamedIndividual
label: BA.2.10.3
has for description: Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from pango-designation issue #609
has for alias: B.1.1.529.2.10.3

BA.2.10.4 lineage
type: BA.2.10.4
type: NamedIndividual
label: BA.2.10.4
has for description: Alias of B.1.1.529.2.10.4, mainly found in India, from pango-designation issue #898
has for alias: B.1.1.529.2.10.4

BA.2.11 lineage
type: BA.2.11
type: NamedIndividual
label: BA.2.11
has for description: Alias of B.1.1.529.2.11, France lineage, from pango-designation issue #491
has for alias: B.1.1.529.2.11

BA.2.12 lineage
type: BA.2.12
type: NamedIndividual
label: BA.2.12
has for description: Alias of B.1.1.529.2.12, North America and Europe lineage, from pango-designation issue #499
has for alias: B.1.1.529.2.12

BA.2.12.1 lineage
type: BA.2.12.1
type: NamedIndividual
label: BA.2.12.1
has for description: Alias of B.1.1.529.2.12.1, USA and Canada lineage, from pango-designation issue #499
has for alias: B.1.1.529.2.12.1

BG.1 lineage
type: BG.1
type: NamedIndividual
label: BG.1
has for description: Alias of B.1.1.529.2.12.1.1, Peru lineage, from pango-designation issue #679
has for alias: B.1.1.529.2.12.1.1

BG.2 lineage
type: BG.2
type: NamedIndividual
label: BG.2
has for description: Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from pango-designation issue #767
has for alias: B.1.1.529.2.12.1.2

BG.3 lineage
type: BG.3
type: NamedIndividual
label: BG.3
has for description: Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from pango-designation issue #784
has for alias: B.1.1.529.2.12.1.3

BG.4 lineage
type: BG.4
type: NamedIndividual
label: BG.4
has for description: Alias of B.1.1.529.2.12.1.4, Israel lineage
has for alias: B.1.1.529.2.12.1.4

BG.5 lineage
type: BG.5
type: NamedIndividual
label: BG.5
has for description: Alias of B.1.1.529.2.12.1.5, mainly found in USA, from pango-designation issue #763
has for alias: B.1.1.529.2.12.1.5

BG.6 lineage
type: BG.6
type: NamedIndividual
label: BG.6
has for description: Alias of B.1.1.529.2.12.1.6, Peru lineage, from pango-designation issue #836
has for alias: B.1.1.529.2.12.1.6

BG.7 lineage
type: BG.7
type: NamedIndividual
label: BG.7
has for description: Alias of B.1.1.529.2.12.1.7, found in Peru, from pango-designation issue #1157
has for alias: B.1.1.529.2.12.1.7

BA.2.12.2 lineage
type: BA.2.12.2
type: NamedIndividual
label: BA.2.12.2
has for description: Alias of B.1.1.529.2.12.2, mainly found in Australia, from pango-designation issue #686
has for alias: B.1.1.529.2.12.2

BA.2.13 lineage
type: BA.2.13
type: NamedIndividual
label: BA.2.13
has for description: Alias of B.1.1.529.2.13, Europe lineage, from pango-designation issue #531
has for alias: B.1.1.529.2.13

BA.2.13.1 lineage
type: BA.2.13.1
type: NamedIndividual
label: BA.2.13.1
has for description: Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from pango-designation issue #785
has for alias: B.1.1.529.2.13.1

BA.2.14 lineage
type: BA.2.14
type: NamedIndividual
label: BA.2.14
has for description: Alias of B.1.1.529.2.14, Denmark lineage, from pango-designation issue #512
has for alias: B.1.1.529.2.14

BA.2.15 lineage
type: BA.2.15
type: NamedIndividual
label: BA.2.15
has for description: Alias of B.1.1.529.2.15, South Africa lineage, from pango-designation issue #533
has for alias: B.1.1.529.2.15

BA.2.16 lineage
type: BA.2.16
type: NamedIndividual
label: BA.2.16
has for description: Alias of B.1.1.529.2.16, UK lineage, from pango-designation issue #534
has for alias: B.1.1.529.2.16

BA.2.17 lineage
type: BA.2.17
type: NamedIndividual
label: BA.2.17
has for description: Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from pango-designation issue #520
has for alias: B.1.1.529.2.17

BA.2.18 lineage
type: BA.2.18
type: NamedIndividual
label: BA.2.18
has for description: Alias of B.1.1.529.2.18, UK lineage, from pango-designation issue #528
has for alias: B.1.1.529.2.18

BA.2.19 lineage
type: BA.2.19
type: NamedIndividual
label: BA.2.19
has for description: Alias of B.1.1.529.2.19, Germany lineage, from pango-designation issue #535
has for alias: B.1.1.529.2.19

BA.2.20 lineage
type: BA.2.20
type: NamedIndividual
label: BA.2.20
has for description: Alias of B.1.1.529.2.20, Canada lineage, from pango-designation issue #544
has for alias: B.1.1.529.2.20

BA.2.21 lineage
type: BA.2.21
type: NamedIndividual
label: BA.2.21
has for description: Alias of B.1.1.529.2.21, Canada and USA lineage, from pango-designation issue #547
has for alias: B.1.1.529.2.21

BA.2.22 lineage
type: BA.2.22
type: NamedIndividual
label: BA.2.22
has for description: Alias of B.1.1.529.2.22, UK lineage, from pango-designation issue #562
has for alias: B.1.1.529.2.22

BA.2.23 lineage
type: BA.2.23
type: NamedIndividual
label: BA.2.23
has for description: Alias of B.1.1.529.2.23, UK lineage, from pango-designation issue #546
has for alias: B.1.1.529.2.23

BA.2.23.1 lineage
type: BA.2.23.1
type: NamedIndividual
label: BA.2.23.1
has for description: Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from pango-designation issue #532
has for alias: B.1.1.529.2.23.1

BA.2.24 lineage
type: BA.2.24
type: NamedIndividual
label: BA.2.24
has for description: Alias of B.1.1.529.2.24, Japan lineage
has for alias: B.1.1.529.2.24

BA.2.25 lineage
type: BA.2.25
type: NamedIndividual
label: BA.2.25
has for description: Alias of B.1.1.529.2.25, Sweden lineage
has for alias: B.1.1.529.2.25

BA.2.25.1 lineage
type: BA.2.25.1
type: NamedIndividual
label: BA.2.25.1
has for description: Alias of B.1.1.529.2.25.1, Slovakia lineage
has for alias: B.1.1.529.2.25.1

BA.2.26 lineage
type: BA.2.26
type: NamedIndividual
label: BA.2.26
has for description: Alias of B.1.1.529.2.26, USA lineage
has for alias: B.1.1.529.2.26

BA.2.27 lineage
type: BA.2.27
type: NamedIndividual
label: BA.2.27
has for description: Alias of B.1.1.529.2.27, Thailand lineage
has for alias: B.1.1.529.2.27

BA.2.28 lineage
type: BA.2.28
type: NamedIndividual
label: BA.2.28
has for description: Alias of B.1.1.529.2.28, Singapore lineage
has for alias: B.1.1.529.2.28

BA.2.29 lineage
type: BA.2.29
type: NamedIndividual
label: BA.2.29
has for description: Alias of B.1.1.529.2.29, Japan lineage
has for alias: B.1.1.529.2.29

BA.2.30 lineage
type: BA.2.30
type: NamedIndividual
label: BA.2.30
has for description: Alias of B.1.1.529.2.30, Curacao lineage
has for alias: B.1.1.529.2.30

BA.2.31 lineage
type: BA.2.31
type: NamedIndividual
label: BA.2.31
has for description: Alias of B.1.1.529.2.31, Israel lineage
has for alias: B.1.1.529.2.31

BA.2.31.1 lineage
type: BA.2.31.1
type: NamedIndividual
label: BA.2.31.1
has for description: Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from pango-designation issue #819
has for alias: B.1.1.529.2.31.1

BA.2.32 lineage
type: BA.2.32
type: NamedIndividual
label: BA.2.32
has for description: Alias of B.1.1.529.2.32, Indonesia lineage
has for alias: B.1.1.529.2.32

BA.2.33 lineage
type: BA.2.33
type: NamedIndividual
label: BA.2.33
has for description: Alias of B.1.1.529.2.33, Australia lineage
has for alias: B.1.1.529.2.33

BA.2.34 lineage
type: BA.2.34
type: NamedIndividual
label: BA.2.34
has for description: Alias of B.1.1.529.2.34, Norway lineage
has for alias: B.1.1.529.2.34

BA.2.35 lineage
type: BA.2.35
type: NamedIndividual
label: BA.2.35
has for description: Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from pango-designation issue #554
has for alias: B.1.1.529.2.35

BA.2.36 lineage
type: BA.2.36
type: NamedIndividual
label: BA.2.36
has for description: Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from pango-designation issue #565
has for alias: B.1.1.529.2.36

BA.2.37 lineage
type: BA.2.37
type: NamedIndividual
label: BA.2.37
has for description: Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from pango-designation issue #572
has for alias: B.1.1.529.2.37

BA.2.38 lineage
type: BA.2.38
type: NamedIndividual
label: BA.2.38
has for description: Alias of B.1.1.529.2.38, lineage in India and other countries, from pango-designation issue #541
has for alias: B.1.1.529.2.38

BA.2.38.1 lineage
type: BA.2.38.1
type: NamedIndividual
label: BA.2.38.1
has for description: Alias of B.1.1.529.2.38.1, India lineage, from pango-designation issue #809
has for alias: B.1.1.529.2.38.1

BA.2.38.2 lineage
type: BA.2.38.2
type: NamedIndividual
label: BA.2.38.2
has for description: Alias of B.1.1.529.2.38.2, mainly found in India, from pango-designation issue #828
has for alias: B.1.1.529.2.38.2

BA.2.38.3 lineage
type: BA.2.38.3
type: NamedIndividual
label: BA.2.38.3
has for description: Alias of B.1.1.529.2.38.3, mainly found in India, from pango-designation issue #840
has for alias: B.1.1.529.2.38.3

BA.2.38.4 lineage
type: BA.2.38.4
type: NamedIndividual
label: BA.2.38.4
has for description: Alias of B.1.1.529.2.38.4, mainly found in India, from pango-designation issue #746
has for alias: B.1.1.529.2.38.4

BH.1 lineage
type: BH.1
type: NamedIndividual
label: BH.1
has for description: Alias of B.1.1.529.2.38.3.1, mainly found in India, from pango-designation issue #913
has for alias: B.1.1.529.2.38.3.1

BA.2.39 lineage
type: BA.2.39
type: NamedIndividual
label: BA.2.39
has for description: Alias of B.1.1.529.2.39, mainly found in England, from pango-designation issue #575
has for alias: B.1.1.529.2.39

BA.2.40 lineage
type: BA.2.40
type: NamedIndividual
label: BA.2.40
has for description: Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from pango-designation issue #542
has for alias: B.1.1.529.2.40

BA.2.40.1 lineage
type: BA.2.40.1
type: NamedIndividual
label: BA.2.40.1
has for description: Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from pango-designation issue #542
has for alias: B.1.1.529.2.40.1

BA.2.41 lineage
type: BA.2.41
type: NamedIndividual
label: BA.2.41
has for description: Alias of B.1.1.529.2.41, mainly found in England and Scotland, from pango-designation issue #586
has for alias: B.1.1.529.2.41

BA.2.42 lineage
type: BA.2.42
type: NamedIndividual
label: BA.2.42
has for description: Alias of B.1.1.529.2.42, mainly found in Australia, from pango-designation issue #610
has for alias: B.1.1.529.2.42

BA.2.43 lineage
type: BA.2.43
type: NamedIndividual
label: BA.2.43
has for description: Alias of B.1.1.529.2.43, mainly found in India, from pango-designation issue #612
has for alias: B.1.1.529.2.43

BA.2.44 lineage
type: BA.2.44
type: NamedIndividual
label: BA.2.44
has for description: Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from pango-designation issue #613
has for alias: B.1.1.529.2.44

BA.2.45 lineage
type: BA.2.45
type: NamedIndividual
label: BA.2.45
has for description: Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from pango-designation issue #616
has for alias: B.1.1.529.2.45

BA.2.46 lineage
type: BA.2.46
type: NamedIndividual
label: BA.2.46
has for description: Alias of B.1.1.529.2.46, mainly found in Scotland, from pango-designation issue #626
has for alias: B.1.1.529.2.46

BA.2.47 lineage
type: BA.2.47
type: NamedIndividual
label: BA.2.47
has for description: Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from pango-designation issue #631
has for alias: B.1.1.529.2.47

BA.2.48 lineage
type: BA.2.48
type: NamedIndividual
label: BA.2.48
has for description: Alias of B.1.1.529.2.48, mainly found in USA, Scotland and England, from pango-designation issue #634
has for alias: B.1.1.529.2.48

BA.2.49 lineage
type: BA.2.49
type: NamedIndividual
label: BA.2.49
has for description: Alias of B.1.1.529.2.49, mainly found in France, England and USA, from pango-designation issue #640
has for alias: B.1.1.529.2.49

BA.2.50 lineage
type: BA.2.50
type: NamedIndividual
label: BA.2.50
has for description: Alias of B.1.1.529.2.50, mainly found in Scotland and England, from pango-designation issue #641
has for alias: B.1.1.529.2.50

BA.2.51 lineage
type: BA.2.51
type: NamedIndividual
label: BA.2.51
has for description: Alias of B.1.1.529.2.51, mainly found in Denmark, from pango-designation issue #644
has for alias: B.1.1.529.2.51

BA.2.52 lineage
type: BA.2.52
type: NamedIndividual
label: BA.2.52
has for description: Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from pango-designation issue #648
has for alias: B.1.1.529.2.52

BA.2.53 lineage
type: BA.2.53
type: NamedIndividual
label: BA.2.53
has for description: Alias of B.1.1.529.2.53, mainly found in Denmark, from pango-designation issue #651
has for alias: B.1.1.529.2.53

BA.2.54 lineage
type: BA.2.54
type: NamedIndividual
label: BA.2.54
has for description: Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from pango-designation issue #658
has for alias: B.1.1.529.2.54

BA.2.55 lineage
type: BA.2.55
type: NamedIndividual
label: BA.2.55
has for description: Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from pango-designation issue #660
has for alias: B.1.1.529.2.55

BA.2.56 lineage
type: BA.2.56
type: NamedIndividual
label: BA.2.56
has for description: Alias of B.1.1.529.2.56, mainly found in Europe, from pango-designation issue #668
has for alias: B.1.1.529.2.56

BA.2.56.1 lineage
type: BA.2.56.1
type: NamedIndividual
label: BA.2.56.1
has for description: Alias of B.1.1.529.2.56.1, mainly found in Japan, from pango-designation issue #745
has for alias: B.1.1.529.2.56.1

BA.2.57 lineage
type: BA.2.57
type: NamedIndividual
label: BA.2.57
has for description: Alias of B.1.1.529.2.57, Malaysia, Singapore and Australia lineage
has for alias: B.1.1.529.2.57

BA.2.58 lineage
type: BA.2.58
type: NamedIndividual
label: BA.2.58
has for description: Alias of B.1.1.529.2.58, Reunion lineage
has for alias: B.1.1.529.2.58

BA.2.59 lineage
type: BA.2.59
type: NamedIndividual
label: BA.2.59
has for description: Alias of B.1.1.529.2.59, mainly found in USA, from pango-designation issue #672
has for alias: B.1.1.529.2.59

BA.2.60 lineage
type: BA.2.60
type: NamedIndividual
label: BA.2.60
has for description: Alias of B.1.1.529.2.60, Peru and Chile lineage
has for alias: B.1.1.529.2.60

BA.2.61 lineage
type: BA.2.61
type: NamedIndividual
label: BA.2.61
has for description: Alias of B.1.1.529.2.61, Singapore lineage
has for alias: B.1.1.529.2.61

BA.2.62 lineage
type: BA.2.62
type: NamedIndividual
label: BA.2.62
has for description: Alias of B.1.1.529.2.62, Australia lineage
has for alias: B.1.1.529.2.62

BA.2.63 lineage
type: BA.2.63
type: NamedIndividual
label: BA.2.63
has for description: Alias of B.1.1.529.2.63, Greece lineage
has for alias: B.1.1.529.2.63

BA.2.64 lineage
type: BA.2.64
type: NamedIndividual
label: BA.2.64
has for description: Alias of B.1.1.529.2.64, Indonesia lineage
has for alias: B.1.1.529.2.64

BA.2.65 lineage
type: BA.2.65
type: NamedIndividual
label: BA.2.65
has for description: Alias of B.1.1.529.2.65, Canada and USA lineage
has for alias: B.1.1.529.2.65

BA.2.66 lineage
type: BA.2.66
type: NamedIndividual
label: BA.2.66
has for description: Alias of B.1.1.529.2.66, Canada lineage
has for alias: B.1.1.529.2.66

BA.2.67 lineage
type: BA.2.67
type: NamedIndividual
label: BA.2.67
has for description: Alias of B.1.1.529.2.67, Slovakia lineage
has for alias: B.1.1.529.2.67

BA.2.68 lineage
type: BA.2.68
type: NamedIndividual
label: BA.2.68
has for description: Alias of B.1.1.529.2.68, South Korea lineage
has for alias: B.1.1.529.2.68

BA.2.69 lineage
type: BA.2.69
type: NamedIndividual
label: BA.2.69
has for description: Alias of B.1.1.529.2.69, Martinique lineage
has for alias: B.1.1.529.2.69

BA.2.70 lineage
type: BA.2.70
type: NamedIndividual
label: BA.2.70
has for description: Alias of B.1.1.529.2.70, Croatia lineage
has for alias: B.1.1.529.2.70

BA.2.71 lineage
type: BA.2.71
type: NamedIndividual
label: BA.2.71
has for description: Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from pango-designation issue #695
has for alias: B.1.1.529.2.71

BA.2.72 lineage
type: BA.2.72
type: NamedIndividual
label: BA.2.72
has for description: Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from pango-designation issue #698
has for alias: B.1.1.529.2.72

BA.2.73 lineage
type: BA.2.73
type: NamedIndividual
label: BA.2.73
has for description: Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from pango-designation issue #632
has for alias: B.1.1.529.2.73

BA.2.74 lineage
type: BA.2.74
type: NamedIndividual
label: BA.2.74
has for description: Alias of B.1.1.529.2.74, mainly found in India, from pango-designation issue #775
has for alias: B.1.1.529.2.74

BA.2.75 lineage
type: BA.2.75
type: NamedIndividual
label: BA.2.75
has for description: Alias of B.1.1.529.2.75, mainly found in India, from pango-designation issue #773
has for alias: B.1.1.529.2.75

g339h
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: g339h

t11a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: t11a

p1640s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: p1640s

s1221l
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: s1221l

n4060s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: n4060s

g662s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: g662s

g257s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.75 lineage
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: g257s

BA.2.75.1 lineage
type: BA.2.75.1
type: NamedIndividual
label: BA.2.75.1
has for description: Alias of B.1.1.529.2.75.1, mainly found in India from pango-designation issue #856
has for alias: B.1.1.529.2.75.1

BL.1 lineage
type: BL.1
type: NamedIndividual
label: BL.1
has for description: Alias of B.1.1.529.2.75.1.1, mainly found in India from pango-designation issue #944, S:R346T on polytomy
has for alias: B.1.1.529.2.75.1.1

BL.1.1 lineage
type: BL.1.1
type: NamedIndividual
label: BL.1.1
has for description: Alias of B.1.1.529.2.75.1.1.1, from pango-designation issue #1079, defined by S:G614S
has for alias: B.1.1.529.2.75.1.1.1

BL.1.2 lineage
type: BL.1.2
type: NamedIndividual
label: BL.1.2
has for description: Alias of B.1.1.529.2.75.1.1.2, mainly Austria, issue #1066, defined by S:G261D, S:V308L
has for alias: B.1.1.529.2.75.1.1.2

BL.1.3 lineage
type: BL.1.3
type: NamedIndividual
label: BL.1.3
has for description: Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, issue #1124, defined by S:F490L
has for alias: B.1.1.529.2.75.1.1.3

BL.1.4 lineage
type: BL.1.4
type: NamedIndividual
label: BL.1.4
has for description: Alias of B.1.1.529.2.75.1.1.4, India/England/New Zealand, defined by S:F490V
has for alias: B.1.1.529.2.75.1.1.4

BL.2 lineage
type: BL.2
type: NamedIndividual
label: BL.2
has for description: Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
has for alias: B.1.1.529.2.75.1.2

BL.2.1 lineage
type: BL.2.1
type: NamedIndividual
label: BL.2.1
has for description: Alias of B.1.1.529.2.75.1.2.1, Australia/Belgium, defined by S:K182E
has for alias: B.1.1.529.2.75.1.2.1

BL.3 lineage
type: BL.3
type: NamedIndividual
label: BL.3
has for description: Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
has for alias: B.1.1.529.2.75.1.3

BL.4 lineage
type: BL.4
type: NamedIndividual
label: BL.4
has for description: Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch
has for alias: B.1.1.529.2.75.1.4

BL.5 lineage
type: BL.5
type: NamedIndividual
label: BL.5
has for description: Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from pango-designation issue #1105
has for alias: B.1.1.529.2.75.1.5

BL.6 lineage
type: BL.6
type: NamedIndividual
label: BL.6
has for description: Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from issue #1531
has for alias: B.1.1.529.2.75.1.6

BA.2.75.2 lineage
type: BA.2.75.2
type: NamedIndividual
label: BA.2.75.2
has for description: Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, pango-designation issue #963
has for alias: B.1.1.529.2.75.2

CA.1 lineage
type: CA.1
type: NamedIndividual
label: CA.1
has for description: Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, pango-designation issue #1063
has for alias: B.1.1.529.2.75.2.1

CA.2 lineage
type: CA.2
type: NamedIndividual
label: CA.2
has for description: Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P
has for alias: B.1.1.529.2.75.2.2

CA.3 lineage
type: CA.3
type: NamedIndividual
label: CA.3
has for description: Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I
has for alias: B.1.1.529.2.75.2.3

CA.3.1 lineage
type: CA.3.1
type: NamedIndividual
label: CA.3.1
has for description: Alias of B.1.1.529.2.75.2.3.1, USA, S:K444M, S:L452R
has for alias: B.1.1.529.2.75.2.3.1

CA.4 lineage
type: CA.4
type: NamedIndividual
label: CA.4
has for description: Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L
has for alias: B.1.1.529.2.75.2.4

CA.5 lineage
type: CA.5
type: NamedIndividual
label: CA.5
has for description: Alias of B.1.1.529.2.75.2.5, USA, S:A260D, S:Q613H
has for alias: B.1.1.529.2.75.2.5

CA.6 lineage
type: CA.6
type: NamedIndividual
label: CA.6
has for description: Alias of B.1.1.529.2.75.2.6, India, ORF1a:Y196H
has for alias: B.1.1.529.2.75.2.6

CA.7 lineage
type: CA.7
type: NamedIndividual
label: CA.7
has for description: Alias of B.1.1.529.2.75.2.7, S:L452R after ORF1a:L3776I
has for alias: B.1.1.529.2.75.2.7

BA.2.75.3 lineage
type: BA.2.75.3
type: NamedIndividual
label: BA.2.75.3
has for description: Alias of B.1.1.529.2.75.3, mainly found in India, pango-designation issue #965
has for alias: B.1.1.529.2.75.3

v1706i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
mutation name: v1706i

k147e
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.2.75.3 lineage
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: k147e

BM.1 lineage
type: BM.1
type: NamedIndividual
label: BM.1
has for description: Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965
has for alias: B.1.1.529.2.75.3.1

BM.1.1 lineage
type: BM.1.1
type: NamedIndividual
label: BM.1.1
has for description: Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T
has for alias: B.1.1.529.2.75.3.1.1

BM.1.1.1 lineage
type: BM.1.1.1
type: NamedIndividual
label: BM.1.1.1
has for description: Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S
has for alias: B.1.1.529.2.75.3.1.1.1

CJ.1 lineage
type: CJ.1
type: NamedIndividual
label: CJ.1
has for description: Alias of B.1.1.529.2.75.3.1.1.1.1, S:S486P, #1171
has for alias: B.1.1.529.2.75.3.1.1.1.1

CJ.1.1 lineage
type: CJ.1.1
type: NamedIndividual
label: CJ.1.1
has for description: Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from issue #1384
has for alias: B.1.1.529.2.75.3.1.1.1.1.1

BM.1.1.2 lineage
type: BM.1.1.2
type: NamedIndividual
label: BM.1.1.2
has for description: Alias of B.1.1.529.2.75.3.1.1.2, England, S:T883I, S:S939F, S:P1079T
has for alias: B.1.1.529.2.75.3.1.1.2

BM.1.1.3 lineage
type: BM.1.1.3
type: NamedIndividual
label: BM.1.1.3
has for description: Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V
has for alias: B.1.1.529.2.75.3.1.1.3

CV.1 lineage
type: CV.1
type: NamedIndividual
label: CV.1
has for description: Alias of B.1.1.529.2.75.3.1.1.3.1, Ireland, S:L452R
has for alias: B.1.1.529.2.75.3.1.1.3.1

CV.2 lineage
type: CV.2
type: NamedIndividual
label: CV.2
has for description: Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P
has for alias: B.1.1.529.2.75.3.1.1.3.2

BM.1.1.4 lineage
type: BM.1.1.4
type: NamedIndividual
label: BM.1.1.4
has for description: Alias of B.1.1.529.2.75.3.1.1.4, S:K356T & S:T572I, from #1438
has for alias: B.1.1.529.2.75.3.1.1.4

BM.1.1.5 lineage
type: BM.1.1.5
type: NamedIndividual
label: BM.1.1.5
has for description: Alias of B.1.1.529.2.75.3.1.1.5, England/Belgium/France, S:N185S & S:L452R
has for alias: B.1.1.529.2.75.3.1.1.5

BM.2 lineage
type: BM.2
type: NamedIndividual
label: BM.2
has for description: Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T
has for alias: B.1.1.529.2.75.3.2

BM.2.1 lineage
type: BM.2.1
type: NamedIndividual
label: BM.2.1
has for description: Alias of B.1.1.529.2.75.3.2.1, India, defined by S:F486V
has for alias: B.1.1.529.2.75.3.2.1

BM.2.2 lineage
type: BM.2.2
type: NamedIndividual
label: BM.2.2
has for description: Alias of B.1.1.529.2.75.3.2.2, Japan/Israel, defined by S:L455S
has for alias: B.1.1.529.2.75.3.2.2

BM.2.3 lineage
type: BM.2.3
type: NamedIndividual
label: BM.2.3
has for description: Alias of B.1.1.529.2.75.3.2.3, India/Singapore, defined by S:F486I
has for alias: B.1.1.529.2.75.3.2.3

BM.3 lineage
type: BM.3
type: NamedIndividual
label: BM.3
has for description: Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S
has for alias: B.1.1.529.2.75.3.3

BM.4 lineage
type: BM.4
type: NamedIndividual
label: BM.4
has for description: Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from pango-designation issue #957
has for alias: B.1.1.529.2.75.3.4

BM.4.1 lineage
type: BM.4.1
type: NamedIndividual
label: BM.4.1
has for description: Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from pango-designation issue #957
has for alias: B.1.1.529.2.75.3.4.1

BM.4.1.1 lineage
type: BM.4.1.1
type: NamedIndividual
label: BM.4.1.1
has for description: Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T
has for alias: B.1.1.529.2.75.3.4.1.1

CH.1 lineage
type: CH.1
type: NamedIndividual
label: CH.1
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1, defined by S:K444T, issue #1113
has for alias: B.1.1.529.2.75.3.4.1.1.1

CH.1.1 lineage
type: CH.1.1
type: NamedIndividual
label: CH.1.1
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1.1, defined by S:L452R, issue #1113
has for alias: B.1.1.529.2.75.3.4.1.1.1.1

q2425r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: CH.1.1 lineage
mutation name: q2425r

f486s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: CH.1.1 lineage
mutation name: f486s

k444t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: CH.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: k444t

r346t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: CH.1.1 lineage
has for lineage: BR.2 lineage
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
mutation name: r346t

q1198k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: CH.1.1 lineage
mutation name: q1198k

CH.1.1.1 lineage
type: CH.1.1.1
type: NamedIndividual
label: CH.1.1.1
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1.1.1, defined by S:N185D
has for alias: B.1.1.529.2.75.3.4.1.1.1.1.1

CH.1.1.2 lineage
type: CH.1.1.2
type: NamedIndividual
label: CH.1.1.2
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch
has for alias: B.1.1.529.2.75.3.4.1.1.1.1.2

CH.1.1.3 lineage
type: CH.1.1.3
type: NamedIndividual
label: CH.1.1.3
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405
has for alias: B.1.1.529.2.75.3.4.1.1.1.1.3

CH.1.1.4 lineage
type: CH.1.1.4
type: NamedIndividual
label: CH.1.1.4
has for description: Alias of B.1.1.529.2.75.3.4.1.1.1.1.4, S:H681R, Austria, from #1370
has for alias: B.1.1.529.2.75.3.4.1.1.1.1.4

CH.2 lineage
type: CH.2
type: NamedIndividual
label: CH.2
has for description: Alias of B.1.1.529.2.75.3.4.1.1.2, defined by S:Q183H
has for alias: B.1.1.529.2.75.3.4.1.1.2

CH.3 lineage
type: CH.3
type: NamedIndividual
label: CH.3
has for description: Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch
has for alias: B.1.1.529.2.75.3.4.1.1.3

CH.3.1 lineage
type: CH.3.1
type: NamedIndividual
label: CH.3.1
has for description: Alias of B.1.1.529.2.75.3.4.1.1.3.1, S:S494P, Australia/Indonesia, from #1421
has for alias: B.1.1.529.2.75.3.4.1.1.3.1

BM.5 lineage
type: BM.5
type: NamedIndividual
label: BM.5
has for description: Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from pango-designation issue #1047
has for alias: B.1.1.529.2.75.3.5

BM.6 lineage
type: BM.6
type: NamedIndividual
label: BM.6
has for description: Alias of B.1.1.529.2.75.3.6, India, defined by S:G75V followed by S:L455S
has for alias: B.1.1.529.2.75.3.6

BA.2.75.4 lineage
type: BA.2.75.4
type: NamedIndividual
label: BA.2.75.4
has for description: Alias of B.1.1.529.2.75.4, mainly found in India, pango-designation issue #935
has for alias: B.1.1.529.2.75.4

BR.1 lineage
type: BR.1
type: NamedIndividual
label: BR.1
has for description: Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M
has for alias: B.1.1.529.2.75.4.1

BR.1.1 lineage
type: BR.1.1
type: NamedIndividual
label: BR.1.1
has for description: Alias of B.1.1.529.2.75.4.1.1, Austria/Australia, S:T307S
has for alias: B.1.1.529.2.75.4.1.1

BR.1.2 lineage
type: BR.1.2
type: NamedIndividual
label: BR.1.2
has for description: Alias of B.1.1.529.2.75.4.1.2, Italy/USA, S:F486S
has for alias: B.1.1.529.2.75.4.1.2

BR.2 lineage
type: BR.2
type: NamedIndividual
label: BR.2
has for description: Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from issue #1063
has for alias: B.1.1.529.2.75.4.2

f486i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BR.2 lineage
mutation name: f486i

BR.2.1 lineage
type: BR.2.1
type: NamedIndividual
label: BR.2.1
has for description: Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from pango-designation issue #1292
has for alias: B.1.1.529.2.75.4.2.1

BR.3 lineage
type: BR.3
type: NamedIndividual
label: BR.3
has for description: Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from issue #1063
has for alias: B.1.1.529.2.75.4.3

BR.4 lineage
type: BR.4
type: NamedIndividual
label: BR.4
has for description: Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from issue #1179
has for alias: B.1.1.529.2.75.4.4

BA.2.75.5 lineage
type: BA.2.75.5
type: NamedIndividual
label: BA.2.75.5
has for description: Alias of B.1.1.529.2.75.5, mainly found in India, pango-designation issue #947
has for alias: B.1.1.529.2.75.5

BN.1 lineage
type: BN.1
type: NamedIndividual
label: BN.1
has for description: Alias of B.1.1.529.2.75.5.1, mainly found in India, pango-designation issue #994
has for alias: B.1.1.529.2.75.5.1

k356t
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BN.1 lineage
has for lineage: BN.1.1.1 lineage
has for lineage: BN.1.2 lineage
has for lineage: BN.1.3 lineage
has for lineage: BN.1.5 lineage
mutation name: k356t

BN.1.1 lineage
type: BN.1.1
type: NamedIndividual
label: BN.1.1
has for description: Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P
has for alias: B.1.1.529.2.75.5.1.1

BN.1.1.1 lineage
type: BN.1.1.1
type: NamedIndividual
label: BN.1.1.1
has for description: Alias of B.1.1.529.2.75.5.1.1.1, Austria, S:N185D
has for alias: B.1.1.529.2.75.5.1.1.1

n185d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BN.1.1.1 lineage
mutation name: n185d

s494p
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BN.1.1.1 lineage
mutation name: s494p

BN.1.2 lineage
type: BN.1.2
type: NamedIndividual
label: BN.1.2
has for description: Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G
has for alias: B.1.1.529.2.75.5.1.2

d72g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: BN.1.2 lineage
mutation name: d72g

BN.1.2.1 lineage
type: BN.1.2.1
type: NamedIndividual
label: BN.1.2.1
has for description: Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N
has for alias: B.1.1.529.2.75.5.1.2.1

BN.1.3 lineage
type: BN.1.3
type: NamedIndividual
label: BN.1.3
has for description: Alias of B.1.1.529.2.75.5.1.3, India, ORF3a:T229I
has for alias: B.1.1.529.2.75.5.1.3

t229i
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: BN.1.3 lineage
mutation name: t229i

m3627i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BN.1.3 lineage
mutation name: m3627i

h110y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BN.1.3 lineage
mutation name: h110y

BN.1.3.1 lineage
type: BN.1.3.1
type: NamedIndividual
label: BN.1.3.1
has for description: Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from pango-designation issue #1257
has for alias: B.1.1.529.2.75.5.1.3.1

DS.1 lineage
type: DS.1
type: NamedIndividual
label: DS.1
has for description: Alias of B.1.1.529.2.75.5.1.3.1.1, USA/Ireland/Austria, S:F486S, S:R403K
has for alias: B.1.1.529.2.75.5.1.3.1.1

BN.1.3.2 lineage
type: BN.1.3.2
type: NamedIndividual
label: BN.1.3.2
has for description: Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from pango-designation issue #1397
has for alias: B.1.1.529.2.75.5.1.3.2

BN.1.3.3 lineage
type: BN.1.3.3
type: NamedIndividual
label: BN.1.3.3
has for description: Alias of B.1.1.529.2.75.5.1.3.3, S:E147Q, mainly Europe
has for alias: B.1.1.529.2.75.5.1.3.3

BN.1.3.4 lineage
type: BN.1.3.4
type: NamedIndividual
label: BN.1.3.4
has for description: Alias of B.1.1.529.2.75.5.1.3.4, S:V445A, Japan/England/NZ/Russia
has for alias: B.1.1.529.2.75.5.1.3.4

BN.1.4 lineage
type: BN.1.4
type: NamedIndividual
label: BN.1.4
has for description: Alias of B.1.1.529.2.75.5.1.4, India, 27501C
has for alias: B.1.1.529.2.75.5.1.4

BN.1.4.1 lineage
type: BN.1.4.1
type: NamedIndividual
label: BN.1.4.1
has for description: Alias of B.1.1.529.2.75.5.1.4.1, S:G261V & S:T678I, from #1417
has for alias: B.1.1.529.2.75.5.1.4.1

BN.1.5 lineage
type: BN.1.5
type: NamedIndividual
label: BN.1.5
has for description: Alias of B.1.1.529.2.75.5.1.5, ORF1a:S2103F
has for alias: B.1.1.529.2.75.5.1.5

g2436d
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BN.1.5 lineage
mutation name: g2436d

BN.1.5.1 lineage
type: BN.1.5.1
type: NamedIndividual
label: BN.1.5.1
has for description: Alias of B.1.1.529.2.75.5.1.5.1, New Zealand, S:S514T
has for alias: B.1.1.529.2.75.5.1.5.1

BN.1.6 lineage
type: BN.1.6
type: NamedIndividual
label: BN.1.6
has for description: Alias of B.1.1.529.2.75.5.1.6, S:D1139H
has for alias: B.1.1.529.2.75.5.1.6

BN.1.7 lineage
type: BN.1.7
type: NamedIndividual
label: BN.1.7
has for description: Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y
has for alias: B.1.1.529.2.75.5.1.7

BN.1.8 lineage
type: BN.1.8
type: NamedIndividual
label: BN.1.8
has for description: Alias of B.1.1.529.2.75.5.1.8, Iceland/USA, S:A475V
has for alias: B.1.1.529.2.75.5.1.8

BN.1.9 lineage
type: BN.1.9
type: NamedIndividual
label: BN.1.9
has for description: Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from pango-designation issue #1327
has for alias: B.1.1.529.2.75.5.1.9

BN.2 lineage
type: BN.2
type: NamedIndividual
label: BN.2
has for description: Alias of B.1.1.529.2.75.5.2, mainly found in India, pango-designation issue #1021
has for alias: B.1.1.529.2.75.5.2

BN.2.1 lineage
type: BN.2.1
type: NamedIndividual
label: BN.2.1
has for description: Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S
has for alias: B.1.1.529.2.75.5.2.1

BN.3 lineage
type: BN.3
type: NamedIndividual
label: BN.3
has for description: Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch
has for alias: B.1.1.529.2.75.5.3

BN.3.1 lineage
type: BN.3.1
type: NamedIndividual
label: BN.3.1
has for description: Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S
has for alias: B.1.1.529.2.75.5.3.1

BN.4 lineage
type: BN.4
type: NamedIndividual
label: BN.4
has for description: Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch
has for alias: B.1.1.529.2.75.5.4

BN.5 lineage
type: BN.5
type: NamedIndividual
label: BN.5
has for description: Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M
has for alias: B.1.1.529.2.75.5.5

BN.6 lineage
type: BN.6
type: NamedIndividual
label: BN.6
has for description: Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A
has for alias: B.1.1.529.2.75.5.6

BA.2.75.6 lineage
type: BA.2.75.6
type: NamedIndividual
label: BA.2.75.6
has for description: Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy
has for alias: B.1.1.529.2.75.6

BY.1 lineage
type: BY.1
type: NamedIndividual
label: BY.1
has for description: Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6
has for alias: B.1.1.529.2.75.6.1

BY.1.1 lineage
type: BY.1.1
type: NamedIndividual
label: BY.1.1
has for description: Alias of B.1.1.529.2.75.6.1.1, S:L452R
has for alias: B.1.1.529.2.75.6.1.1

BY.1.1.1 lineage
type: BY.1.1.1
type: NamedIndividual
label: BY.1.1.1
has for description: Alias of B.1.1.529.2.75.6.1.1.1, Europe, S:N185D, S:H207R,
has for alias: B.1.1.529.2.75.6.1.1.1

BY.1.2 lineage
type: BY.1.2
type: NamedIndividual
label: BY.1.2
has for description: Alias of B.1.1.529.2.75.6.1.2, Europe, 26828T
has for alias: B.1.1.529.2.75.6.1.2

BY.1.2.1 lineage
type: BY.1.2.1
type: NamedIndividual
label: BY.1.2.1
has for description: Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P
has for alias: B.1.1.529.2.75.6.1.2.1

BA.2.75.7 lineage
type: BA.2.75.7
type: NamedIndividual
label: BA.2.75.7
has for description: Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy
has for alias: B.1.1.529.2.75.7

BA.2.75.8 lineage
type: BA.2.75.8
type: NamedIndividual
label: BA.2.75.8
has for description: Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, issue #1085
has for alias: B.1.1.529.2.75.8

BA.2.75.9 lineage
type: BA.2.75.9
type: NamedIndividual
label: BA.2.75.9
has for description: Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T
has for alias: B.1.1.529.2.75.9

CB.1 lineage
type: CB.1
type: NamedIndividual
label: CB.1
has for description: Alias of B.1.1.529.2.75.9.1, England, defined by S:486V
has for alias: B.1.1.529.2.75.9.1

BA.2.75.10 lineage
type: BA.2.75.10
type: NamedIndividual
label: BA.2.75.10
has for description: Alias of B.1.1.529.2.75.10, India, ORF1a:T3959A
has for alias: B.1.1.529.2.75.10

BA.2.76 lineage
type: BA.2.76
type: NamedIndividual
label: BA.2.76
has for description: Alias of B.1.1.529.2.76, mainly found in India and USA, from pango-designation issue #787
has for alias: B.1.1.529.2.76

BA.2.76.1 lineage
type: BA.2.76.1
type: NamedIndividual
label: BA.2.76.1
has for description: Alias of B.1.1.529.2.76.1, mainly found in India, from pango-designation issue #899
has for alias: B.1.1.529.2.76.1

BA.2.76.2 lineage
type: BA.2.76.2
type: NamedIndividual
label: BA.2.76.2
has for description: Alias of B.1.1.529.2.76.2, found in Japan, from pango-designation issue #939
has for alias: B.1.1.529.2.76.2

BA.2.77 lineage
type: BA.2.77
type: NamedIndividual
label: BA.2.77
has for description: Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from pango-designation issue #732
has for alias: B.1.1.529.2.77

BA.2.78 lineage
type: BA.2.78
type: NamedIndividual
label: BA.2.78
has for description: Alias of B.1.1.529.2.78, mainly found in India, from pango-designation issue #814
has for alias: B.1.1.529.2.78

BA.2.79 lineage
type: BA.2.79
type: NamedIndividual
label: BA.2.79
has for description: Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from pango-designation issue #812
has for alias: B.1.1.529.2.79

BA.2.79.1 lineage
type: BA.2.79.1
type: NamedIndividual
label: BA.2.79.1
has for description: Alias of B.1.1.529.2.79.1, India lineage, from pango-designation issue #814
has for alias: B.1.1.529.2.79.1

BA.2.80 lineage
type: BA.2.80
type: NamedIndividual
label: BA.2.80
has for description: Alias of B.1.1.529.2.80, found in Denmark, from pango-designation issue #733
has for alias: B.1.1.529.2.80

BA.2.81 lineage
type: BA.2.81
type: NamedIndividual
label: BA.2.81
has for description: Alias of B.1.1.529.2.81, Brazil lineage
has for alias: B.1.1.529.2.81

BA.2.82 lineage
type: BA.2.82
type: NamedIndividual
label: BA.2.82
has for description: Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from pango-designation issue #874
has for alias: B.1.1.529.2.82

BA.2.83 lineage
type: BA.2.83
type: NamedIndividual
label: BA.2.83
has for description: Alias of B.1.1.529.2.83, mainly found in India, from pango-designation issue #1053
has for alias: B.1.1.529.2.83

BA.2.85 lineage
type: BA.2.85
type: NamedIndividual
label: BA.2.85
has for description: Alias of B.1.1.529.2.85, mainly found in Japan, from pango-designation issue #983
has for alias: B.1.1.529.2.85

BA.3 lineage
type: BA.3
type: NamedIndividual
label: BA.3
has for description: Alias of B.1.1.529.3, from pango-designation issue #367
has for alias: B.1.1.529.3

BA.3.1 lineage
type: BA.3.1
type: NamedIndividual
label: BA.3.1
has for description: Alias of B.1.1.529.3.1, mainly found in Poland, from pango-designation issue #540
has for alias: B.1.1.529.3.1

BA.4 lineage
type: BA.4
type: NamedIndividual
label: BA.4
has for description: Alias of B.1.1.529.4, from pango-designation issue #517
has for alias: B.1.1.529.4

BA.4.1 lineage
type: BA.4.1
type: NamedIndividual
label: BA.4.1
has for description: Alias of B.1.1.529.4.1, mainly found in South Africa, from pango-designation issue #548
has for alias: B.1.1.529.4.1

BA.4.1.1 lineage
type: BA.4.1.1
type: NamedIndividual
label: BA.4.1.1
has for description: Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from pango-designation issue #667
has for alias: B.1.1.529.4.1.1

BA.4.1.2 lineage
type: BA.4.1.2
type: NamedIndividual
label: BA.4.1.2
has for description: Alias of B.1.1.529.4.1.2, Austria lineage
has for alias: B.1.1.529.4.1.2

BA.4.1.3 lineage
type: BA.4.1.3
type: NamedIndividual
label: BA.4.1.3
has for description: Alias of B.1.1.529.4.1.3, Israel lineage
has for alias: B.1.1.529.4.1.3

BA.4.1.4 lineage
type: BA.4.1.4
type: NamedIndividual
label: BA.4.1.4
has for description: Alias of B.1.1.529.4.1.4, Israel lineage
has for alias: B.1.1.529.4.1.4

BA.4.1.5 lineage
type: BA.4.1.5
type: NamedIndividual
label: BA.4.1.5
has for description: Alias of B.1.1.529.4.1.5, Israel lineage
has for alias: B.1.1.529.4.1.5

BA.4.1.6 lineage
type: BA.4.1.6
type: NamedIndividual
label: BA.4.1.6
has for description: Alias of B.1.1.529.4.1.6, USA lineage
has for alias: B.1.1.529.4.1.6

BA.4.1.7 lineage
type: BA.4.1.7
type: NamedIndividual
label: BA.4.1.7
has for description: Alias of B.1.1.529.4.1.7, Australia lineage
has for alias: B.1.1.529.4.1.7

BA.4.1.8 lineage
type: BA.4.1.8
type: NamedIndividual
label: BA.4.1.8
has for description: Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from pango-designation issue #800
has for alias: B.1.1.529.4.1.8

BA.4.1.9 lineage
type: BA.4.1.9
type: NamedIndividual
label: BA.4.1.9
has for description: Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from pango-designation issue #926
has for alias: B.1.1.529.4.1.9

BA.4.1.10 lineage
type: BA.4.1.10
type: NamedIndividual
label: BA.4.1.10
has for description: Alias of B.1.1.529.4.1.10, mainly found in France, from issue #1073, defined by S:N354D, S:R346T
has for alias: B.1.1.529.4.1.10

CS.1 lineage
type: CS.1
type: NamedIndividual
label: CS.1
has for description: Alias of B.1.1.529.4.1.10.1, Denmark, Netherlands, England, defined by S:K444R
has for alias: B.1.1.529.4.1.10.1

BA.4.2 lineage
type: BA.4.2
type: NamedIndividual
label: BA.4.2
has for description: Alias of B.1.1.529.4.2, USA lineage
has for alias: B.1.1.529.4.2

BA.4.3 lineage
type: BA.4.3
type: NamedIndividual
label: BA.4.3
has for description: Alias of B.1.1.529.4.3, Israel lineage
has for alias: B.1.1.529.4.3

BA.4.4 lineage
type: BA.4.4
type: NamedIndividual
label: BA.4.4
has for description: Alias of B.1.1.529.4.4, USA lineage
has for alias: B.1.1.529.4.4

BA.4.5 lineage
type: BA.4.5
type: NamedIndividual
label: BA.4.5
has for description: Alias of B.1.1.529.4.5, Australia lineage
has for alias: B.1.1.529.4.5

BA.4.6 lineage
type: BA.4.6
type: NamedIndividual
label: BA.4.6
has for description: Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from pango-designation issue #741
has for alias: B.1.1.529.4.6

BA.4.6.1 lineage
type: BA.4.6.1
type: NamedIndividual
label: BA.4.6.1
has for description: Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from pango-designation issue #900
has for alias: B.1.1.529.4.6.1

BA.4.6.2 lineage
type: BA.4.6.2
type: NamedIndividual
label: BA.4.6.2
has for description: Alias of B.1.1.529.4.6.2, Dominican Republic, USA, defined by S:V445A, from pango-designation issue #1198
has for alias: B.1.1.529.4.6.2

BA.4.6.3 lineage
type: BA.4.6.3
type: NamedIndividual
label: BA.4.6.3
has for description: Alias of B.1.1.529.4.6.3, defined by S:444N, S:460K, S:144-, from pango-designation issue #1195
has for alias: B.1.1.529.4.6.3

BA.4.6.4 lineage
type: BA.4.6.4
type: NamedIndividual
label: BA.4.6.4
has for description: Alias of B.1.1.529.4.6.4, Oceania, defined by ORF7a:Q62H
has for alias: B.1.1.529.4.6.4

BA.4.6.5 lineage
type: BA.4.6.5
type: NamedIndividual
label: BA.4.6.5
has for description: Alias of B.1.1.529.4.6.5, global, defined by ORF9b:N36S
has for alias: B.1.1.529.4.6.5

DC.1 lineage
type: DC.1
type: NamedIndividual
label: DC.1
has for description: Alias of B.1.1.529.4.6.5.1, global, defined by S:N460S
has for alias: B.1.1.529.4.6.5.1

BA.4.7 lineage
type: BA.4.7
type: NamedIndividual
label: BA.4.7
has for description: Alias of B.1.1.529.4.7, mainly found in England, South Africa and Scotland, from pango-designation issue #777
has for alias: B.1.1.529.4.7

BA.4.8 lineage
type: BA.4.8
type: NamedIndividual
label: BA.4.8
has for description: Alias of B.1.1.529.4.8, mainly South Africa and Eswatini, from pango-designation issue #670
has for alias: B.1.1.529.4.8

BA.5 lineage
type: BA.5
type: NamedIndividual
label: BA.5
has for description: Alias of B.1.1.529.5, from pango-designation issue #517
has for alias: B.1.1.529.5

f486v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
has for lineage: XAS lineage
mutation name: f486v

d3n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: BA.5 lineage
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
has for lineage: BA.5.2 lineage
has for lineage: BA.5.2.1 lineage
has for lineage: BF.5 lineage
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
has for lineage: BA.5.6 lineage
mutation name: d3n

BA.5.1 lineage
type: BA.5.1
type: NamedIndividual
label: BA.5.1
has for description: Alias of B.1.1.529.5.1, Portugal lineage
has for alias: B.1.1.529.5.1

l37f
type: SNP
type: NamedIndividual
has for gene: orf10
has for lineage: BA.5.1 lineage
has for lineage: DL.1 lineage
mutation name: l37f

BA.5.1.1 lineage
type: BA.5.1.1
type: NamedIndividual
label: BA.5.1.1
has for description: Alias of B.1.1.529.5.1.1, USA lineage
has for alias: B.1.1.529.5.1.1

BA.5.1.2 lineage
type: BA.5.1.2
type: NamedIndividual
label: BA.5.1.2
has for description: Alias of B.1.1.529.5.1.2, mainly found in Denmark, Portugal and Luxembourg, from pango-designation issue #790
has for alias: B.1.1.529.5.1.2

BA.5.1.3 lineage
type: BA.5.1.3
type: NamedIndividual
label: BA.5.1.3
has for description: Alias of B.1.1.529.5.1.3, mainly found in Germany Portugal and Spain, from pango-designation issue #765
has for alias: B.1.1.529.5.1.3

BA.5.1.4 lineage
type: BA.5.1.4
type: NamedIndividual
label: BA.5.1.4
has for description: Alias of B.1.1.529.5.1.4, mainly found in Denmark and England, from pango-designation issue #801
has for alias: B.1.1.529.5.1.4

BA.5.1.5 lineage
type: BA.5.1.5
type: NamedIndividual
label: BA.5.1.5
has for description: Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from pango-designation issue #835
has for alias: B.1.1.529.5.1.5

BA.5.1.6 lineage
type: BA.5.1.6
type: NamedIndividual
label: BA.5.1.6
has for description: Alias of B.1.1.529.5.1.6, Mexico lineage
has for alias: B.1.1.529.5.1.6

BA.5.1.7 lineage
type: BA.5.1.7
type: NamedIndividual
label: BA.5.1.7
has for description: Alias of B.1.1.529.5.1.7, Canada lineage
has for alias: B.1.1.529.5.1.7

BA.5.1.8 lineage
type: BA.5.1.8
type: NamedIndividual
label: BA.5.1.8
has for description: Alias of B.1.1.529.5.1.8, Peru lineage
has for alias: B.1.1.529.5.1.8

BA.5.1.9 lineage
type: BA.5.1.9
type: NamedIndividual
label: BA.5.1.9
has for description: Alias of B.1.1.529.5.1.9, mainly found in England, Luxembourg, Scotland and Ireland from pango-designation issue #786
has for alias: B.1.1.529.5.1.9

BA.5.1.10 lineage
type: BA.5.1.10
type: NamedIndividual
label: BA.5.1.10
has for description: Alias of B.1.1.529.5.1.10, mainly found in USA, Italy and England, from pango-designation issue #901
has for alias: B.1.1.529.5.1.10

BK.1 lineage
type: BK.1
type: NamedIndividual
label: BK.1
has for description: Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from pango-designation issue #901
has for alias: B.1.1.529.5.1.10.1

BA.5.1.11 lineage
type: BA.5.1.11
type: NamedIndividual
label: BA.5.1.11
has for description: Alias of B.1.1.529.5.1.11, mainly found in Denmark, from pango-designation issue #908
has for alias: B.1.1.529.5.1.11

BA.5.1.12 lineage
type: BA.5.1.12
type: NamedIndividual
label: BA.5.1.12
has for description: Alias of B.1.1.529.5.1.12, mainly found in Spain, from pango-designation issue #902
has for alias: B.1.1.529.5.1.12

BA.5.1.14 lineage
type: BA.5.1.14
type: NamedIndividual
label: BA.5.1.14
has for description: Alias of B.1.1.529.5.1.14, mainly found in Brazil
has for alias: B.1.1.529.5.1.14

BA.5.1.15 lineage
type: BA.5.1.15
type: NamedIndividual
label: BA.5.1.15
has for description: Alias of B.1.1.529.5.1.15, Peru and Brazil lineage
has for alias: B.1.1.529.5.1.15

DL.1 lineage
type: DL.1
type: NamedIndividual
label: DL.1
has for description: Alias of B.1.1.529.5.1.15.1, found mainly in Brazil and USA, from pango-designation issue #1376
has for alias: B.1.1.529.5.1.15.1

k444n
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: DL.1 lineage
has for lineage: CK.1 lineage
mutation name: k444n

h3509y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: DL.1 lineage
mutation name: h3509y

BA.5.1.16 lineage
type: BA.5.1.16
type: NamedIndividual
label: BA.5.1.16
has for description: Alias of B.1.1.529.5.1.16, Japan lineage
has for alias: B.1.1.529.5.1.16

BA.5.1.17 lineage
type: BA.5.1.17
type: NamedIndividual
label: BA.5.1.17
has for description: Alias of B.1.1.529.5.1.17, France lineage
has for alias: B.1.1.529.5.1.17

BA.5.1.18 lineage
type: BA.5.1.18
type: NamedIndividual
label: BA.5.1.18
has for description: Alias of B.1.1.529.5.1.18, mainly found in USA, from pango-designation issue #930
has for alias: B.1.1.529.5.1.18

BA.5.1.19 lineage
type: BA.5.1.19
type: NamedIndividual
label: BA.5.1.19
has for description: Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from pango-designation issue #999
has for alias: B.1.1.529.5.1.19

BA.5.1.20 lineage
type: BA.5.1.20
type: NamedIndividual
label: BA.5.1.20
has for description: Alias of B.1.1.529.5.1.20, mainly found in USA and Belgium, from pango-designation issue #1000
has for alias: B.1.1.529.5.1.20

BA.5.1.21 lineage
type: BA.5.1.21
type: NamedIndividual
label: BA.5.1.21
has for description: Alias of B.1.1.529.5.1.21, mainly found in Gambia and Japan, from pango-designation issue #958
has for alias: B.1.1.529.5.1.21

BT.1 lineage
type: BT.1
type: NamedIndividual
label: BT.1
has for description: Alias of B.1.1.529.5.1.21.1, mainly found in Japan, from pango-designation issue #958
has for alias: B.1.1.529.5.1.21.1

BT.2 lineage
type: BT.2
type: NamedIndividual
label: BT.2
has for description: Alias of B.1.1.529.5.1.21.2, mainly found in Denmark, Germany and France, from pango-designation issue #1192
has for alias: B.1.1.529.5.1.21.2

BA.5.1.22 lineage
type: BA.5.1.22
type: NamedIndividual
label: BA.5.1.22
has for description: Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1273L, from pango-designation issue #1135
has for alias: B.1.1.529.5.1.22

DH.1 lineage
type: DH.1
type: NamedIndividual
label: DH.1
has for description: Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from pango-designation issue #1242
has for alias: B.1.1.529.5.1.22.1

BA.5.1.23 lineage
type: BA.5.1.23
type: NamedIndividual
label: BA.5.1.23
has for description: Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from pango-designation issue #1135
has for alias: B.1.1.529.5.1.23

DE.1 lineage
type: DE.1
type: NamedIndividual
label: DE.1
has for description: Alias of B.1.1.529.5.1.23.1, S:A694V
has for alias: B.1.1.529.5.1.23.1

DE.2 lineage
type: DE.2
type: NamedIndividual
label: DE.2
has for description: Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V
has for alias: B.1.1.529.5.1.23.2

BA.5.1.24 lineage
type: BA.5.1.24
type: NamedIndividual
label: BA.5.1.24
has for description: Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from pango-designation issue #1135
has for alias: B.1.1.529.5.1.24

BA.5.1.25 lineage
type: BA.5.1.25
type: NamedIndividual
label: BA.5.1.25
has for description: Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from pango-designation issue #1135
has for alias: B.1.1.529.5.1.25

DJ.1 lineage
type: DJ.1
type: NamedIndividual
label: DJ.1
has for description: Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from pango-designation issue #1245
has for alias: B.1.1.529.5.1.25.1

DJ.1.1 lineage
type: DJ.1.1
type: NamedIndividual
label: DJ.1.1
has for description: Alias of B.1.1.529.5.1.25.1.1, found in Peru, from pango-designation issue #1245
has for alias: B.1.1.529.5.1.25.1.1

DJ.1.2 lineage
type: DJ.1.2
type: NamedIndividual
label: DJ.1.2
has for description: Alias of B.1.1.529.5.1.25.1.2, found mainly in Peru, from pango-designation issue #1379
has for alias: B.1.1.529.5.1.25.1.2

DJ.1.3 lineage
type: DJ.1.3
type: NamedIndividual
label: DJ.1.3
has for description: Alias of B.1.1.529.5.1.25.1.3 found mainly in Peru, Colombia and USA, from pango-designation issue #1409
has for alias: B.1.1.529.5.1.25.1.3

BA.5.1.26 lineage
type: BA.5.1.26
type: NamedIndividual
label: BA.5.1.26
has for description: Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T
has for alias: B.1.1.529.5.1.26

CU.1 lineage
type: CU.1
type: NamedIndividual
label: CU.1
has for description: Alias of B.1.1.529.5.1.26.1, Central/Eastern Europe, S:T95I, S:T547K
has for alias: B.1.1.529.5.1.26.1

BA.5.1.27 lineage
type: BA.5.1.27
type: NamedIndividual
label: BA.5.1.27
has for description: Alias of B.1.1.529.5.1.27, mainly found in North America, defined by S:R346T
has for alias: B.1.1.529.5.1.27

BA.5.1.28 lineage
type: BA.5.1.28
type: NamedIndividual
label: BA.5.1.28
has for description: Alias of B.1.1.529.5.1.28, mainly found in North America, defined by S:R346T (and A18480G)
has for alias: B.1.1.529.5.1.28

BA.5.1.29 lineage
type: BA.5.1.29
type: NamedIndividual
label: BA.5.1.29
has for description: Alias of B.1.1.529.5.1.29, mainly found in Russia, Germany and Estonia, from pango-designation issue #1060
has for alias: B.1.1.529.5.1.29

CL.1 lineage
type: CL.1
type: NamedIndividual
label: CL.1
has for description: Alias of B.1.1.529.5.1.29.1, S:150E and S:460K, issue #1187
has for alias: B.1.1.529.5.1.29.1

BA.5.1.30 lineage
type: BA.5.1.30
type: NamedIndividual
label: BA.5.1.30
has for description: Alias of B.1.1.529.5.1.30, ORF6:D6G
has for alias: B.1.1.529.5.1.30

BA.5.1.31 lineage
type: BA.5.1.31
type: NamedIndividual
label: BA.5.1.31
has for description: Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from pango-designation issue #991
has for alias: B.1.1.529.5.1.31

BA.5.2 lineage
type: BA.5.2
type: NamedIndividual
label: BA.5.2
has for description: Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from pango-designation issue #551
has for alias: B.1.1.529.5.2

t1050n
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.5.2 lineage
has for lineage: CR.1 lineage
has for lineage: BA.5.2.21 lineage
has for lineage: CK.1 lineage
has for lineage: BA.5.2.31 lineage
mutation name: t1050n

BA.5.2.1 lineage
type: BA.5.2.1
type: NamedIndividual
label: BA.5.2.1
has for description: Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from pango-designation issue #657
has for alias: B.1.1.529.5.2.1

BF.1 lineage
type: BF.1
type: NamedIndividual
label: BF.1
has for description: Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from pango-designation issue #618
has for alias: B.1.1.529.5.2.1.1

BF.1.1 lineage
type: BF.1.1
type: NamedIndividual
label: BF.1.1
has for description: Alias of B.1.1.529.5.2.1.1.1, USA lineage
has for alias: B.1.1.529.5.2.1.1.1

BF.2 lineage
type: BF.2
type: NamedIndividual
label: BF.2
has for description: Alias of B.1.1.529.5.2.1.2, Denmark lineage
has for alias: B.1.1.529.5.2.1.2

BF.3 lineage
type: BF.3
type: NamedIndividual
label: BF.3
has for description: Alias of B.1.1.529.5.2.1.3, India lineage
has for alias: B.1.1.529.5.2.1.3

BF.3.1 lineage
type: BF.3.1
type: NamedIndividual
label: BF.3.1
has for description: Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from pango-designation issue #825
has for alias: B.1.1.529.5.2.1.3.1

BF.4 lineage
type: BF.4
type: NamedIndividual
label: BF.4
has for description: Alias of B.1.1.529.5.2.1.4, mainly found in England, from pango-designation issue #788
has for alias: B.1.1.529.5.2.1.4

BF.5 lineage
type: BF.5
type: NamedIndividual
label: BF.5
has for description: Alias of B.1.1.529.5.2.1.5, Israel lineage
has for alias: B.1.1.529.5.2.1.5

a1020s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BF.5 lineage
mutation name: a1020s

h47y
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: BF.5 lineage
mutation name: h47y

BF.5.1 lineage
type: BF.5.1
type: NamedIndividual
label: BF.5.1
has for description: Alias of B.1.1.529.5.2.1.5.1 found mainly in Japan and Israel, from pango-designation issue #1475
has for alias: B.1.1.529.5.2.1.5.1

BF.5.2 lineage
type: BF.5.2
type: NamedIndividual
label: BF.5.2
has for description: Alias of B.1.1.529.5.2.1.5.2 found mainly in Japan, from pango-designation issue #1476
has for alias: B.1.1.529.5.2.1.5.2

BF.6 lineage
type: BF.6
type: NamedIndividual
label: BF.6
has for description: Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from pango-designation issue #821
has for alias: B.1.1.529.5.2.1.6

BF.7 lineage
type: BF.7
type: NamedIndividual
label: BF.7
has for description: Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from pango-designation issue #827
has for alias: B.1.1.529.5.2.1.7

s33f
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BF.7 lineage
mutation name: s33f

del30/32
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BF.7 lineage
has for lineage: BF.7.13.2 lineage
mutation name: del30/32

BF.7.1 lineage
type: BF.7.1
type: NamedIndividual
label: BF.7.1
has for description: Alias of B.1.1.529.5.2.1.7.1, mainly found in Germany, S:G261V, from pango-designation issue #1132
has for alias: B.1.1.529.5.2.1.7.1

BF.7.2 lineage
type: BF.7.2
type: NamedIndividual
label: BF.7.2
has for description: Alias of B.1.1.529.5.2.1.7.2, Denmark, S:H1101Y and S:V486I, issue #1216
has for alias: B.1.1.529.5.2.1.7.2

BF.7.3 lineage
type: BF.7.3
type: NamedIndividual
label: BF.7.3
has for description: Alias of B.1.1.529.5.2.1.7.3, France/Czechia, S:K182E
has for alias: B.1.1.529.5.2.1.7.3

BF.7.4 lineage
type: BF.7.4
type: NamedIndividual
label: BF.7.4
has for description: Alias of B.1.1.529.5.2.1.7.4, Europe, ORF8:H17Y
has for alias: B.1.1.529.5.2.1.7.4

BF.7.4.1 lineage
type: BF.7.4.1
type: NamedIndividual
label: BF.7.4.1
has for description: Alias of B.1.1.529.5.2.1.7.4.1, found mainly in USA and Netherlands, from pango-designation issue #1253
has for alias: B.1.1.529.5.2.1.7.4.1

BF.7.4.2 lineage
type: BF.7.4.2
type: NamedIndividual
label: BF.7.4.2
has for description: Alias of B.1.1.529.5.2.1.7.4.2, Europe
has for alias: B.1.1.529.5.2.1.7.4.2

BF.7.5 lineage
type: BF.7.5
type: NamedIndividual
label: BF.7.5
has for description: Alias of B.1.1.529.5.2.1.7.5, Europe, ORF1b:P1427L
has for alias: B.1.1.529.5.2.1.7.5

BF.7.5.1 lineage
type: BF.7.5.1
type: NamedIndividual
label: BF.7.5.1
has for description: Alias of B.1.1.529.5.2.1.7.5.1, found mainly in Germany and Denmark, from pango-designation issue #1317
has for alias: B.1.1.529.5.2.1.7.5.1

BF.7.6 lineage
type: BF.7.6
type: NamedIndividual
label: BF.7.6
has for description: Alias of B.1.1.529.5.2.1.7.6, Europe, ORF3a:E239D
has for alias: B.1.1.529.5.2.1.7.6

BF.7.7 lineage
type: BF.7.7
type: NamedIndividual
label: BF.7.7
has for description: Alias of B.1.1.529.5.2.1.7.7, Europe, S:D80G
has for alias: B.1.1.529.5.2.1.7.7

BF.7.8 lineage
type: BF.7.8
type: NamedIndividual
label: BF.7.8
has for description: Alias of B.1.1.529.5.2.1.7.8, Europe, S:T883I
has for alias: B.1.1.529.5.2.1.7.8

BF.7.9 lineage
type: BF.7.9
type: NamedIndividual
label: BF.7.9
has for description: Alias of B.1.1.529.5.2.1.7.9, Europe, S:Q677H
has for alias: B.1.1.529.5.2.1.7.9

BF.7.10 lineage
type: BF.7.10
type: NamedIndividual
label: BF.7.10
has for description: Alias of B.1.1.529.5.2.1.7.10, Europe, S:Q1201K
has for alias: B.1.1.529.5.2.1.7.10

BF.7.11 lineage
type: BF.7.11
type: NamedIndividual
label: BF.7.11
has for description: Alias of B.1.1.529.5.2.1.7.11, Europe, S:D1260Y
has for alias: B.1.1.529.5.2.1.7.11

BF.7.12 lineage
type: BF.7.12
type: NamedIndividual
label: BF.7.12
has for description: Alias of B.1.1.529.5.2.1.7.12, Europe, S:A942S
has for alias: B.1.1.529.5.2.1.7.12

BF.7.13 lineage
type: BF.7.13
type: NamedIndividual
label: BF.7.13
has for description: Alias of B.1.1.529.5.2.1.7.13, Belgium, ORF1a:H388Y, ORF1a:H1160Y,
has for alias: B.1.1.529.5.2.1.7.13

BF.7.13.1 lineage
type: BF.7.13.1
type: NamedIndividual
label: BF.7.13.1
has for description: Alias of B.1.1.529.5.2.1.7.13.1, Europe, S:T430I, S:P681Y
has for alias: B.1.1.529.5.2.1.7.13.1

BF.7.13.2 lineage
type: BF.7.13.2
type: NamedIndividual
label: BF.7.13.2
has for description: Alias of B.1.1.529.5.2.1.7.13.2, Poland, S:A653V
has for alias: B.1.1.529.5.2.1.7.13.2

h1160y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BF.7.13.2 lineage
mutation name: h1160y

s245f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BF.7.13.2 lineage
mutation name: s245f

a15s
type: SNP
type: NamedIndividual
has for gene: orf7b
has for lineage: BF.7.13.2 lineage
mutation name: a15s

s33i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BF.7.13.2 lineage
mutation name: s33i

i2626l
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BF.7.13.2 lineage
mutation name: i2626l

BF.7.14 lineage
type: BF.7.14
type: NamedIndividual
label: BF.7.14
has for description: Alias of B.1.1.529.5.2.1.7.14, China, S:C1243F, from issue #1470
has for alias: B.1.1.529.5.2.1.7.14

BF.7.15 lineage
type: BF.7.15
type: NamedIndividual
label: BF.7.15
has for description: Alias of B.1.1.529.5.2.1.7.15, Japan, S:G257D & ORF1a:A1812V, from issue #1358
has for alias: B.1.1.529.5.2.1.7.15

BF.8 lineage
type: BF.8
type: NamedIndividual
label: BF.8
has for description: Alias of B.1.1.529.5.2.1.8, USA lineage
has for alias: B.1.1.529.5.2.1.8

BF.9 lineage
type: BF.9
type: NamedIndividual
label: BF.9
has for description: Alias of B.1.1.529.5.2.1.9, Canada lineage
has for alias: B.1.1.529.5.2.1.9

BF.10 lineage
type: BF.10
type: NamedIndividual
label: BF.10
has for description: Alias of B.1.1.529.5.2.1.10, USA lineage
has for alias: B.1.1.529.5.2.1.10

BF.10.1 lineage
type: BF.10.1
type: NamedIndividual
label: BF.10.1
has for description: Alias of B.1.1.529.5.2.1.10.1, found mainly in USA and Mexico, from pango-designation issue #1442
has for alias: B.1.1.529.5.2.1.10.1

BF.11 lineage
type: BF.11
type: NamedIndividual
label: BF.11
has for description: Alias of B.1.1.529.5.2.1.11, mainly found in England, S:R346T, from pango-designation issue #837
has for alias: B.1.1.529.5.2.1.11

BF.11.1 lineage
type: BF.11.1
type: NamedIndividual
label: BF.11.1
has for description: Alias of B.1.1.529.5.2.1.11.1, England, S:S1252F
has for alias: B.1.1.529.5.2.1.11.1

BF.11.2 lineage
type: BF.11.2
type: NamedIndividual
label: BF.11.2
has for description: Alias of B.1.1.529.5.2.1.11.2, Wales, S:K147N
has for alias: B.1.1.529.5.2.1.11.2

BF.11.3 lineage
type: BF.11.3
type: NamedIndividual
label: BF.11.3
has for description: Alias of B.1.1.529.5.2.1.11.3, ORF1a:L122F
has for alias: B.1.1.529.5.2.1.11.3

BF.11.4 lineage
type: BF.11.4
type: NamedIndividual
label: BF.11.4
has for description: Alias of B.1.1.529.5.2.1.11.4, England, S:S704L
has for alias: B.1.1.529.5.2.1.11.4

BF.11.5 lineage
type: BF.11.5
type: NamedIndividual
label: BF.11.5
has for description: Alias of B.1.1.529.5.2.1.11.5, England, ORF8:I121L
has for alias: B.1.1.529.5.2.1.11.5

BF.12 lineage
type: BF.12
type: NamedIndividual
label: BF.12
has for description: Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from pango-designation issue #752
has for alias: B.1.1.529.5.2.1.12

BF.13 lineage
type: BF.13
type: NamedIndividual
label: BF.13
has for description: Alias of B.1.1.529.5.2.1.13, mainly found in USA, from pango-designation issue #883
has for alias: B.1.1.529.5.2.1.13

BF.14 lineage
type: BF.14
type: NamedIndividual
label: BF.14
has for description: Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from pango-designation issue #843
has for alias: B.1.1.529.5.2.1.14

BF.15 lineage
type: BF.15
type: NamedIndividual
label: BF.15
has for description: Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from pango-designation issue #893
has for alias: B.1.1.529.5.2.1.15

BF.16 lineage
type: BF.16
type: NamedIndividual
label: BF.16
has for description: Alias of B.1.1.529.5.2.1.16, found in USA, from pango-designation issue #942
has for alias: B.1.1.529.5.2.1.16

BF.17 lineage
type: BF.17
type: NamedIndividual
label: BF.17
has for description: Alias of B.1.1.529.5.2.1.17, Australia lineage
has for alias: B.1.1.529.5.2.1.17

BF.18 lineage
type: BF.18
type: NamedIndividual
label: BF.18
has for description: Alias of B.1.1.529.5.2.1.18, Australia lineage
has for alias: B.1.1.529.5.2.1.18

BF.19 lineage
type: BF.19
type: NamedIndividual
label: BF.19
has for description: Alias of B.1.1.529.5.2.1.19, Greece lineage
has for alias: B.1.1.529.5.2.1.19

BF.20 lineage
type: BF.20
type: NamedIndividual
label: BF.20
has for description: Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries
has for alias: B.1.1.529.5.2.1.20

BF.21 lineage
type: BF.21
type: NamedIndividual
label: BF.21
has for description: Alias of B.1.1.529.5.2.1.21, USA lineage
has for alias: B.1.1.529.5.2.1.21

BF.22 lineage
type: BF.22
type: NamedIndividual
label: BF.22
has for description: Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from pango-designation issue #1010
has for alias: B.1.1.529.5.2.1.22

BF.23 lineage
type: BF.23
type: NamedIndividual
label: BF.23
has for description: Alias of B.1.1.529.5.2.1.23, mainly found in Czechia, from pango-designation issue #1036
has for alias: B.1.1.529.5.2.1.23

BF.24 lineage
type: BF.24
type: NamedIndividual
label: BF.24
has for description: Alias of B.1.1.529.5.2.1.24, mainly found in Indonesia, defined by ORF1a:G683C on S:1020S branch
has for alias: B.1.1.529.5.2.1.24

BF.25 lineage
type: BF.25
type: NamedIndividual
label: BF.25
has for description: Alias of B.1.1.529.5.2.1.25, USA lineage, defined by S:445A and C18657T
has for alias: B.1.1.529.5.2.1.25

BF.26 lineage
type: BF.26
type: NamedIndividual
label: BF.26
has for description: Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, issue #1142
has for alias: B.1.1.529.5.2.1.26

BF.27 lineage
type: BF.27
type: NamedIndividual
label: BF.27
has for description: Alias of B.1.1.529.5.2.1.27, Singapore lineage, defined by ORF1a:A2784V, issue #1140
has for alias: B.1.1.529.5.2.1.27

BF.28 lineage
type: BF.28
type: NamedIndividual
label: BF.28
has for description: Alias of B.1.1.529.5.2.1.28, Singapore lineage, defined by ORF1a:Q44L, issue #1141
has for alias: B.1.1.529.5.2.1.28

BF.29 lineage
type: BF.29
type: NamedIndividual
label: BF.29
has for description: Alias of B.1.1.529.5.2.1.29, mainly found in Denmark and USA, from pango-designation issue #1162
has for alias: B.1.1.529.5.2.1.29

BF.30 lineage
type: BF.30
type: NamedIndividual
label: BF.30
has for description: Alias of B.1.1.529.5.2.1.30, South Africa/England, defined by S:R346T after C25916T, C14599T
has for alias: B.1.1.529.5.2.1.30

BF.31 lineage
type: BF.31
type: NamedIndividual
label: BF.31
has for description: Alias of B.1.1.529.5.2.1.31, Chile, 23758T
has for alias: B.1.1.529.5.2.1.31

BF.31.1 lineage
type: BF.31.1
type: NamedIndividual
label: BF.31.1
has for description: Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248-
has for alias: B.1.1.529.5.2.1.31.1

BF.32 lineage
type: BF.32
type: NamedIndividual
label: BF.32
has for description: Alias of B.1.1.529.5.2.1.32, found mainly in USA, from pango-designation issue #1250
has for alias: B.1.1.529.5.2.1.32

BF.33 lineage
type: BF.33
type: NamedIndividual
label: BF.33
has for description: Alias of B.1.1.529.5.2.1.33, Brazil/France, S:R346I, S:N460K
has for alias: B.1.1.529.5.2.1.33

BF.34 lineage
type: BF.34
type: NamedIndividual
label: BF.34
has for description: Alias of B.1.1.529.5.2.1.34, found mainly in UK and Canada, from pango-designation issue #1233
has for alias: B.1.1.529.5.2.1.34

BA.5.2.2 lineage
type: BA.5.2.2
type: NamedIndividual
label: BA.5.2.2
has for description: Alias of B.1.1.529.5.2.2, France and Martinique lineage
has for alias: B.1.1.529.5.2.2

BA.5.2.3 lineage
type: BA.5.2.3
type: NamedIndividual
label: BA.5.2.3
has for description: Alias of B.1.1.529.5.2.3, UK lineage
has for alias: B.1.1.529.5.2.3

BZ.1 lineage
type: BZ.1
type: NamedIndividual
label: BZ.1
has for description: Alias of B.1.1.529.5.2.3.1, Denmark lineage, defined by S:Q677H
has for alias: B.1.1.529.5.2.3.1

BA.5.2.4 lineage
type: BA.5.2.4
type: NamedIndividual
label: BA.5.2.4
has for description: Alias of B.1.1.529.5.2.4, Australia lineage
has for alias: B.1.1.529.5.2.4

BA.5.2.5 lineage
type: BA.5.2.5
type: NamedIndividual
label: BA.5.2.5
has for description: Alias of B.1.1.529.5.2.5, Indonesia lineage
has for alias: B.1.1.529.5.2.5

BA.5.2.6 lineage
type: BA.5.2.6
type: NamedIndividual
label: BA.5.2.6
has for description: Alias of B.1.1.529.5.2.6, global lineage, S:R346T, from pango-designation issue #870
has for alias: B.1.1.529.5.2.6

CP.1 lineage
type: CP.1
type: NamedIndividual
label: CP.1
has for description: Alias of B.1.1.529.5.2.6.1, global lineage, 27360C
has for alias: B.1.1.529.5.2.6.1

CP.1.1 lineage
type: CP.1.1
type: NamedIndividual
label: CP.1.1
has for description: Alias of B.1.1.529.5.2.6.1.1, Portugal, France, Denmark, UK lineage, S:V445A
has for alias: B.1.1.529.5.2.6.1.1

CP.1.2 lineage
type: CP.1.2
type: NamedIndividual
label: CP.1.2
has for description: Alias of B.1.1.529.5.2.6.1.2, England, S:K150N
has for alias: B.1.1.529.5.2.6.1.2

CP.1.3 lineage
type: CP.1.3
type: NamedIndividual
label: CP.1.3
has for description: Alias of B.1.1.529.5.2.6.1.3, England, S:G446S
has for alias: B.1.1.529.5.2.6.1.3

CP.2 lineage
type: CP.2
type: NamedIndividual
label: CP.2
has for description: Alias of B.1.1.529.5.2.6.2, Bangladesh, S:N334K
has for alias: B.1.1.529.5.2.6.2

CP.3 lineage
type: CP.3
type: NamedIndividual
label: CP.3
has for description: Alias of B.1.1.529.5.2.6.3, Turkey, S:N460Y
has for alias: B.1.1.529.5.2.6.3

CP.4 lineage
type: CP.4
type: NamedIndividual
label: CP.4
has for description: Alias of B.1.1.529.5.2.6.4, Turkey, S:I770V
has for alias: B.1.1.529.5.2.6.4

CP.5 lineage
type: CP.5
type: NamedIndividual
label: CP.5
has for description: Alias of B.1.1.529.5.2.6.5, South Africa, S:C1247F
has for alias: B.1.1.529.5.2.6.5

CP.6 lineage
type: CP.6
type: NamedIndividual
label: CP.6
has for description: Alias of B.1.1.529.5.2.6.6, S:V1264L
has for alias: B.1.1.529.5.2.6.6

BA.5.2.7 lineage
type: BA.5.2.7
type: NamedIndividual
label: BA.5.2.7
has for description: Alias of B.1.1.529.5.2.7, global lineage, from pango-designation issue #924
has for alias: B.1.1.529.5.2.7

CY.1 lineage
type: CY.1
type: NamedIndividual
label: CY.1
has for description: Alias of B.1.1.529.5.2.7.1, found mainly in Belgium, Netherlands and Luxembourg, from pango-designation issue #1247
has for alias: B.1.1.529.5.2.7.1

BA.5.2.8 lineage
type: BA.5.2.8
type: NamedIndividual
label: BA.5.2.8
has for description: Alias of B.1.1.529.5.2.8, Israel lineage
has for alias: B.1.1.529.5.2.8

BA.5.2.9 lineage
type: BA.5.2.9
type: NamedIndividual
label: BA.5.2.9
has for description: Alias of B.1.1.529.5.2.9, USA lineage
has for alias: B.1.1.529.5.2.9

BA.5.2.10 lineage
type: BA.5.2.10
type: NamedIndividual
label: BA.5.2.10
has for description: Alias of B.1.1.529.5.2.10, Brazil lineage
has for alias: B.1.1.529.5.2.10

BA.5.2.11 lineage
type: BA.5.2.11
type: NamedIndividual
label: BA.5.2.11
has for description: Alias of B.1.1.529.5.2.11, Philippines lineage
has for alias: B.1.1.529.5.2.11

BA.5.2.12 lineage
type: BA.5.2.12
type: NamedIndividual
label: BA.5.2.12
has for description: Alias of B.1.1.529.5.2.12, Japan lineage
has for alias: B.1.1.529.5.2.12

BA.5.2.13 lineage
type: BA.5.2.13
type: NamedIndividual
label: BA.5.2.13
has for description: Alias of B.1.1.529.5.2.13, mainly found in England, from pango-designation issue #959
has for alias: B.1.1.529.5.2.13

BA.5.2.14 lineage
type: BA.5.2.14
type: NamedIndividual
label: BA.5.2.14
has for description: Alias of B.1.1.529.5.2.14, mainly found in Denmark, Canada and Pakistan, from pango-designation issue #1002
has for alias: B.1.1.529.5.2.14

BA.5.2.16 lineage
type: BA.5.2.16
type: NamedIndividual
label: BA.5.2.16
has for description: Alias of B.1.1.529.5.2.16, Indonesia lineage, defined by ORF1a:A3697V, indirectly from pango-designation issue #1065
has for alias: B.1.1.529.5.2.16

BU.1 lineage
type: BU.1
type: NamedIndividual
label: BU.1
has for description: Alias of B.1.1.529.5.2.16.1, defined by S:444M and S:460K, from pango-designation issue #1065
has for alias: B.1.1.529.5.2.16.1

BU.2 lineage
type: BU.2
type: NamedIndividual
label: BU.2
has for description: Alias of B.1.1.529.5.2.16.2, USA lineage, S:V445A
has for alias: B.1.1.529.5.2.16.2

BU.3 lineage
type: BU.3
type: NamedIndividual
label: BU.3
has for description: Alias of B.1.1.529.5.2.16.3, Guatemala, S:K147N, S:N450D
has for alias: B.1.1.529.5.2.16.3

BA.5.2.18 lineage
type: BA.5.2.18
type: NamedIndividual
label: BA.5.2.18
has for description: Alias of B.1.1.529.5.2.18, mainly Scandinavia, defined by S:K444R on ORF1b:1050N branch, from pango-designation issue #1025
has for alias: B.1.1.529.5.2.18

CR.1 lineage
type: CR.1
type: NamedIndividual
label: CR.1
has for description: Alias of B.1.1.529.5.2.18.1, global, S:R346T
has for alias: B.1.1.529.5.2.18.1

CR.1.1 lineage
type: CR.1.1
type: NamedIndividual
label: CR.1.1
has for description: Alias of B.1.1.529.5.2.18.1.1, S:V62I
has for alias: B.1.1.529.5.2.18.1.1

CR.1.2 lineage
type: CR.1.2
type: NamedIndividual
label: CR.1.2
has for description: Alias of B.1.1.529.5.2.18.1.2, Canada/Israel, S:V445A
has for alias: B.1.1.529.5.2.18.1.2

CR.1.3 lineage
type: CR.1.3
type: NamedIndividual
label: CR.1.3
has for description: Alias of B.1.1.529.5.2.18.1.3, found mainly in Denmark and Japan, from pango-designation issue #1355
has for alias: B.1.1.529.5.2.18.1.3

CR.2 lineage
type: CR.2
type: NamedIndividual
label: CR.2
has for description: Alias of B.1.1.529.5.2.18.2, England, S:Y145H
has for alias: B.1.1.529.5.2.18.2

BA.5.2.19 lineage
type: BA.5.2.19
type: NamedIndividual
label: BA.5.2.19
has for description: Alias of B.1.1.529.5.2.19, mainly Scandinavia, defined by ORF3a:T14I on ORF1b:1050N branch, from issue #916
has for alias: B.1.1.529.5.2.19

BA.5.2.20 lineage
type: BA.5.2.20
type: NamedIndividual
label: BA.5.2.20
has for description: Alias of B.1.1.529.5.2.20, mainly Indonesia, defined by C23707T on ORF1b:1050N branch to reduce unspecified BA.5.2
has for alias: B.1.1.529.5.2.20

BV.1 lineage
type: BV.1
type: NamedIndividual
label: BV.1
has for description: Alias of B.1.1.529.5.2.20.1, mainly found in Denmark, from pango-designation issue #1019, formerly BA.5.2.17
has for alias: B.1.1.529.5.2.20.1

BV.2 lineage
type: BV.2
type: NamedIndividual
label: BV.2
has for description: Alias of B.1.1.529.5.2.20.2, defined by S:K444N
has for alias: B.1.1.529.5.2.20.2

BA.5.2.21 lineage
type: BA.5.2.21
type: NamedIndividual
label: BA.5.2.21
has for description: Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1b:1050N branch to reduce unspecified BA.5.2
has for alias: B.1.1.529.5.2.21

CN.1 lineage
type: CN.1
type: NamedIndividual
label: CN.1
has for description: Alias of B.1.1.529.5.2.21.1, S:N450D, issue #1108
has for alias: B.1.1.529.5.2.21.1

CN.2 lineage
type: CN.2
type: NamedIndividual
label: CN.2
has for description: Alias of B.1.1.529.5.2.21.2, S:R346T, S:Y28H, USA/Canada, from #1404
has for alias: B.1.1.529.5.2.21.2

BA.5.2.22 lineage
type: BA.5.2.22
type: NamedIndividual
label: BA.5.2.22
has for description: Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from pango-designation issue #945
has for alias: B.1.1.529.5.2.22

BA.5.2.23 lineage
type: BA.5.2.23
type: NamedIndividual
label: BA.5.2.23
has for description: Alias of B.1.1.529.5.2.23, mainly found in USA, from pango-designation issue #1090
has for alias: B.1.1.529.5.2.23

BA.5.2.24 lineage
type: BA.5.2.24
type: NamedIndividual
label: BA.5.2.24
has for description: Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch
has for alias: B.1.1.529.5.2.24

CK.1 lineage
type: CK.1
type: NamedIndividual
label: CK.1
has for description: Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, issue #1120
has for alias: B.1.1.529.5.2.24.1

CK.1.1 lineage
type: CK.1.1
type: NamedIndividual
label: CK.1.1
has for description: Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from pango-designation issue #1452
has for alias: B.1.1.529.5.2.24.1.1

CK.1.2 lineage
type: CK.1.2
type: NamedIndividual
label: CK.1.2
has for description: Alias of B.1.1.529.5.2.24.1.2, Pakistan, S:G181V, S:R346T, from issue #1467
has for alias: B.1.1.529.5.2.24.1.2

CK.2 lineage
type: CK.2
type: NamedIndividual
label: CK.2
has for description: Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F
has for alias: B.1.1.529.5.2.24.2

CK.2.1 lineage
type: CK.2.1
type: NamedIndividual
label: CK.2.1
has for description: Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K
has for alias: B.1.1.529.5.2.24.2.1

CK.2.1.1 lineage
type: CK.2.1.1
type: NamedIndividual
label: CK.2.1.1
has for description: Alias of B.1.1.529.5.2.24.2.1.1, defined by S:S255F
has for alias: B.1.1.529.5.2.24.2.1.1

CK.3 lineage
type: CK.3
type: NamedIndividual
label: CK.3
has for description: Alias of B.1.1.529.5.2.24.3, found mainly in Singapore and USA, from pango-designation issue #1121
has for alias: B.1.1.529.5.2.24.3

DG.1 lineage
type: DG.1
type: NamedIndividual
label: DG.1
has for description: Alias of B.1.1.529.5.2.24.2.1.1.1, defined by S:G252S
has for alias: B.1.1.529.5.2.24.2.1.1.1

BA.5.2.25 lineage
type: BA.5.2.25
type: NamedIndividual
label: BA.5.2.25
has for description: Alias of B.1.1.529.5.2.25, mainly found in France, USA and Canada, from pango-designation issue #1111
has for alias: B.1.1.529.5.2.25

DB.1 lineage
type: DB.1
type: NamedIndividual
label: DB.1
has for description: Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K
has for alias: B.1.1.529.5.2.25.1

DB.2 lineage
type: DB.2
type: NamedIndividual
label: DB.2
has for description: Alias of B.1.1.529.5.2.25.2, BeNeLux, S:A262S
has for alias: B.1.1.529.5.2.25.2

BA.5.2.26 lineage
type: BA.5.2.26
type: NamedIndividual
label: BA.5.2.26
has for description: Alias of B.1.1.529.5.2.26, most common in Thailand, defined by ORF3a:L108V, from pango-designation issue #1133
has for alias: B.1.1.529.5.2.26

BA.5.2.27 lineage
type: BA.5.2.27
type: NamedIndividual
label: BA.5.2.27
has for description: Alias of B.1.1.529.5.2.27, most common in Vietnam, defined by ORF1a:I2332V, from pango-designation issue #1133
has for alias: B.1.1.529.5.2.27

CF.1 lineage
type: CF.1
type: NamedIndividual
label: CF.1
has for description: Alias of B.1.1.529.5.2.27.1, US and Mexico lineage, defined by S:K97T, originally designated as BA.5.2.15 from issue #1054
has for alias: B.1.1.529.5.2.27.1

CG.1 lineage
type: CG.1
type: NamedIndividual
label: CG.1
has for description: Alias of B.1.1.529.5.2.26.1, mainly found in Germany, Poland and Denmark, from pango-designation issue #1126
has for alias: B.1.1.529.5.2.26.1

BA.5.2.28 lineage
type: BA.5.2.28
type: NamedIndividual
label: BA.5.2.28
has for description: Alias of B.1.1.529.5.2.28, most common in Malaysia, defined by ORF1a:T1437I, from pango-designation issue #1133
has for alias: B.1.1.529.5.2.28

BA.5.2.29 lineage
type: BA.5.2.29
type: NamedIndividual
label: BA.5.2.29
has for description: Alias of B.1.1.529.5.2.29, mainly found in Denmark, from pango-designation issue #1050
has for alias: B.1.1.529.5.2.29

BA.5.2.30 lineage
type: BA.5.2.30
type: NamedIndividual
label: BA.5.2.30
has for description: Alias of B.1.1.529.5.2.30, Europe lineage, defined by S:G446D
has for alias: B.1.1.529.5.2.30

BA.5.2.31 lineage
type: BA.5.2.31
type: NamedIndividual
label: BA.5.2.31
has for description: Alias of B.1.1.529.5.2.31, US lineage, defined by S:L84I
has for alias: B.1.1.529.5.2.31

l84i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: BA.5.2.31 lineage
mutation name: l84i

CD.1 lineage
type: CD.1
type: NamedIndividual
label: CD.1
has for description: Alias of B.1.1.529.5.2.31.1, US lineage, defined by S:G446D, S:A688T
has for alias: B.1.1.529.5.2.31.1

CD.2 lineage
type: CD.2
type: NamedIndividual
label: CD.2
has for description: Alias of B.1.1.529.5.2.31.2, US lineage, defined by S:A435S
has for alias: B.1.1.529.5.2.31.2

BA.5.2.32 lineage
type: BA.5.2.32
type: NamedIndividual
label: BA.5.2.32
has for description: Alias of B.1.1.529.5.2.32, Russia lineage, defined by S:N450D
has for alias: B.1.1.529.5.2.32

BA.5.2.33 lineage
type: BA.5.2.33
type: NamedIndividual
label: BA.5.2.33
has for description: Alias of B.1.1.529.5.2.33, UK lineage, defined by ORF8:P93S
has for alias: B.1.1.529.5.2.33

CE.1 lineage
type: CE.1
type: NamedIndividual
label: CE.1
has for description: Alias of B.1.1.529.5.2.33.1, UK lineage, defined by S:R346I
has for alias: B.1.1.529.5.2.33.1

BA.5.2.34 lineage
type: BA.5.2.34
type: NamedIndividual
label: BA.5.2.34
has for description: Alias of B.1.1.529.5.2.34, mainly found in Israel and USA, from pango-designation issue #992
has for alias: B.1.1.529.5.2.34

BA.5.2.35 lineage
type: BA.5.2.35
type: NamedIndividual
label: BA.5.2.35
has for description: Alias of B.1.1.529.5.2.35, Pakistan lineage, defined by S:R346T after G28423C and C7006T
has for alias: B.1.1.529.5.2.35

BA.5.2.36 lineage
type: BA.5.2.36
type: NamedIndividual
label: BA.5.2.36
has for description: Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T
has for alias: B.1.1.529.5.2.36

CT.1 lineage
type: CT.1
type: NamedIndividual
label: CT.1
has for description: Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T
has for alias: B.1.1.529.5.2.36.1

BA.5.2.37 lineage
type: BA.5.2.37
type: NamedIndividual
label: BA.5.2.37
has for description: Alias of B.1.1.529.5.2.37, found mainly in USA and India, from pango-designation issue #1117
has for alias: B.1.1.529.5.2.37

BA.5.2.38 lineage
type: BA.5.2.38
type: NamedIndividual
label: BA.5.2.38
has for description: Alias of B.1.1.529.5.2.38, S:T430I
has for alias: B.1.1.529.5.2.38

DA.1 lineage
type: DA.1
type: NamedIndividual
label: DA.1
has for description: Alias of B.1.1.529.5.2.38.1, Indonesia, S:R346T
has for alias: B.1.1.529.5.2.38.1

BA.5.2.39 lineage
type: BA.5.2.39
type: NamedIndividual
label: BA.5.2.39
has for description: Alias of B.1.1.529.5.2.39, USA, S:R346T
has for alias: B.1.1.529.5.2.39

BA.5.2.40 lineage
type: BA.5.2.40
type: NamedIndividual
label: BA.5.2.40
has for description: Alias of B.1.1.529.5.2.40, Sweden, S:N450D
has for alias: B.1.1.529.5.2.40

BA.5.2.41 lineage
type: BA.5.2.41
type: NamedIndividual
label: BA.5.2.41
has for description: Alias of B.1.1.529.5.2.41, found mainly in Sweden, from pango-designation issue #1328
has for alias: B.1.1.529.5.2.41

BA.5.2.42 lineage
type: BA.5.2.42
type: NamedIndividual
label: BA.5.2.42
has for description: Alias of B.1.1.529.5.2.42, found mainly in Australia, from pango-designation issue #1266
has for alias: B.1.1.529.5.2.42

BA.5.2.43 lineage
type: BA.5.2.43
type: NamedIndividual
label: BA.5.2.43
has for description: Alias of B.1.1.529.5.2.43, found mainly in SouthKorea, from pango-designation issue #1312
has for alias: B.1.1.529.5.2.43

BA.5.2.44 lineage
type: BA.5.2.44
type: NamedIndividual
label: BA.5.2.44
has for description: Alias of B.1.1.529.5.2.44, Indonesia/Malaysia/SouthKorea/global, ORF1a:L2564F
has for alias: B.1.1.529.5.2.44

BA.5.2.45 lineage
type: BA.5.2.45
type: NamedIndividual
label: BA.5.2.45
has for description: Alias of B.1.1.529.5.2.45, found mainly in Australia, from pango-designation issue #1383
has for alias: B.1.1.529.5.2.45

BA.5.2.46 lineage
type: BA.5.2.46
type: NamedIndividual
label: BA.5.2.46
has for description: Alias of B.1.1.529.5.2.46 found mainly in Japan, from pango-designation issue #1446
has for alias: B.1.1.529.5.2.46

BA.5.2.47 lineage
type: BA.5.2.47
type: NamedIndividual
label: BA.5.2.47
has for description: Alias of B.1.1.529.5.2.47 found mainly in Indonesia, Australia, and USA, from pango-designation issue #1496
has for alias: B.1.1.529.5.2.47

DQ.1 lineage
type: DQ.1
type: NamedIndividual
label: DQ.1
has for description: Alias of B.1.1.529.5.2.47.1 found mainly in Indonesia, Germany, and USA, from pango-designation issue #1496
has for alias: B.1.1.529.5.2.47.1

BA.5.2.48 lineage
type: BA.5.2.48
type: NamedIndividual
label: BA.5.2.48
has for description: Alias of B.1.1.529.5.2.48, China, C2710T, C8626T, T17208C, from pango-designation issue #1471
has for alias: B.1.1.529.5.2.48

BA.5.2.49 lineage
type: BA.5.2.49
type: NamedIndividual
label: BA.5.2.49
has for description: Alias of B.1.1.529.5.2.49, China, S:T883I, A14673G, T16456C, from #1480
has for alias: B.1.1.529.5.2.49

BA.5.3 lineage
type: BA.5.3
type: NamedIndividual
label: BA.5.3
has for description: Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from pango-designation issue #550
has for alias: B.1.1.529.5.3

BA.5.3.1 lineage
type: BA.5.3.1
type: NamedIndividual
label: BA.5.3.1
has for description: Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from pango-designation issue #625
has for alias: B.1.1.529.5.3.1

BE.1 lineage
type: BE.1
type: NamedIndividual
label: BE.1
has for description: Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from pango-designation issue #625
has for alias: B.1.1.529.5.3.1.1

m1156i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: m1156i

e136d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: e136d

q556k
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BE.1 lineage
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
has for lineage: BA.5.3.5 lineage
mutation name: q556k

BE.1.1 lineage
type: BE.1.1
type: NamedIndividual
label: BE.1.1
has for description: Alias of B.1.1.529.5.3.1.1.1, Germany lineage
has for alias: B.1.1.529.5.3.1.1.1

l3829f
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BE.1.1 lineage
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: l3829f

BE.1.1.1 lineage
type: BE.1.1.1
type: NamedIndividual
label: BE.1.1.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1, found globally, from pango-designation issue #931
has for alias: B.1.1.529.5.3.1.1.1.1

BQ.1 lineage
type: BQ.1
type: NamedIndividual
label: BQ.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from pango-designation issue #993
has for alias: B.1.1.529.5.3.1.1.1.1.1

BQ.1.1 lineage
type: BQ.1.1
type: NamedIndividual
label: BQ.1.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from issue #993
has for alias: B.1.1.529.5.3.1.1.1.1.1.1

n1191s
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: n1191s

y264h
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BQ.1.1 lineage
has for lineage: BQ.1.1.4 lineage
mutation name: y264h

BQ.1.1.1 lineage
type: BQ.1.1.1
type: NamedIndividual
label: BQ.1.1.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.1, Europe, ORF1b:V1639A
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.1

CZ.1 lineage
type: CZ.1
type: NamedIndividual
label: CZ.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.1, England/SouthKorea/Romania, S:F490I
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.1.1

BQ.1.1.2 lineage
type: BQ.1.1.2
type: NamedIndividual
label: BQ.1.1.2
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.2, England, S:D253G, from issue #1209
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.2

BQ.1.1.3 lineage
type: BQ.1.1.3
type: NamedIndividual
label: BQ.1.1.3
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.3, England, A15111G
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.3

DR.1 lineage
type: DR.1
type: NamedIndividual
label: DR.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, found mainly in USA, from pango-designation issue #1420
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.3.1

BQ.1.1.4 lineage
type: BQ.1.1.4
type: NamedIndividual
label: BQ.1.1.4
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.4, T29173C
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.4

BQ.1.1.5 lineage
type: BQ.1.1.5
type: NamedIndividual
label: BQ.1.1.5
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.5, ORF1b:P2313L, ORF1a:V3855I
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.5

DN.1 lineage
type: DN.1
type: NamedIndividual
label: DN.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1, S:K147N
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.5.1

DN.1.1 lineage
type: DN.1.1
type: NamedIndividual
label: DN.1.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1 found mainly in UK and Denmark, from pango-designation issue #1463
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.5.1.1

BQ.1.1.6 lineage
type: BQ.1.1.6
type: NamedIndividual
label: BQ.1.1.6
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.6, ORF1a:L681F
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.6

BQ.1.1.7 lineage
type: BQ.1.1.7
type: NamedIndividual
label: BQ.1.1.7
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.7, ORF1a:S216Y
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.7

DK.1 lineage
type: DK.1
type: NamedIndividual
label: DK.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.7.1, S:339N, ORF1a:A1809T
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.7.1

BQ.1.1.8 lineage
type: BQ.1.1.8
type: NamedIndividual
label: BQ.1.1.8
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.8, ORF1a:H374Y, ORF1a:L969F
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.8

DP.1 lineage
type: DP.1
type: NamedIndividual
label: DP.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.8.1, S:A352S, England/Belgium
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.8.1

BQ.1.1.9 lineage
type: BQ.1.1.9
type: NamedIndividual
label: BQ.1.1.9
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.9, S:S151I
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.9

BQ.1.1.10 lineage
type: BQ.1.1.10
type: NamedIndividual
label: BQ.1.1.10
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.10, S:Y144-, T16413C, Denmark/Germany
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.10

BQ.1.1.11 lineage
type: BQ.1.1.11
type: NamedIndividual
label: BQ.1.1.11
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.11, S:S494P
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.11

BQ.1.1.12 lineage
type: BQ.1.1.12
type: NamedIndividual
label: BQ.1.1.12
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.12, France/US, S:S494P, on ORF1a:T4368I branch
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.12

BQ.1.1.13 lineage
type: BQ.1.1.13
type: NamedIndividual
label: BQ.1.1.13
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.13, Denmark/Israel/Switzerland/France, E:V62F and S:Y144-
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.13

BQ.1.1.14 lineage
type: BQ.1.1.14
type: NamedIndividual
label: BQ.1.1.14
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.14, England, G23608T
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.14

CW.1 lineage
type: CW.1
type: NamedIndividual
label: CW.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.14.1, England, S:G446S
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.14.1

BQ.1.1.15 lineage
type: BQ.1.1.15
type: NamedIndividual
label: BQ.1.1.15
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.15, Spain, T18897C
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.15

DM.1 lineage
type: DM.1
type: NamedIndividual
label: DM.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.15.1, Spain/Europe/US, S:A348S
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.15.1

BQ.1.1.16 lineage
type: BQ.1.1.16
type: NamedIndividual
label: BQ.1.1.16
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.16, England, S:Q607H
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.16

BQ.1.1.17 lineage
type: BQ.1.1.17
type: NamedIndividual
label: BQ.1.1.17
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.17, France, ORF1a:S2273F
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.17

BQ.1.1.18 lineage
type: BQ.1.1.18
type: NamedIndividual
label: BQ.1.1.18
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.18, France, C6541T
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.18

BQ.1.1.19 lineage
type: BQ.1.1.19
type: NamedIndividual
label: BQ.1.1.19
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.19, England, N:Q380H
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.19

BQ.1.1.20 lineage
type: BQ.1.1.20
type: NamedIndividual
label: BQ.1.1.20
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.20, Denmark, S:144- and ORF3a:H204Y
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.20

BQ.1.1.21 lineage
type: BQ.1.1.21
type: NamedIndividual
label: BQ.1.1.21
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.21, Switzerland/France, S:144- and A17946G
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.21

BQ.1.1.22 lineage
type: BQ.1.1.22
type: NamedIndividual
label: BQ.1.1.22
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.22, Australia/England/Denmark, S:144- and C913A
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.22

BQ.1.1.23 lineage
type: BQ.1.1.23
type: NamedIndividual
label: BQ.1.1.23
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.23, France, ORF3a:V97I, S:Y144-, on G6421T branch
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.23

BQ.1.1.24 lineage
type: BQ.1.1.24
type: NamedIndividual
label: BQ.1.1.24
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.24, England, 11941T, S:Y144-
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.24

BQ.1.1.25 lineage
type: BQ.1.1.25
type: NamedIndividual
label: BQ.1.1.25
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.25, USA/Canada, S:F490S and S:Y144-, from issue #1350
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.25

BQ.1.1.26 lineage
type: BQ.1.1.26
type: NamedIndividual
label: BQ.1.1.26
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.26, S:E471Q
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.26

BQ.1.1.27 lineage
type: BQ.1.1.27
type: NamedIndividual
label: BQ.1.1.27
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.27, France/USA, S:G181R, ORF1a:F2864L, on G6421T branch
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.27

BQ.1.1.28 lineage
type: BQ.1.1.28
type: NamedIndividual
label: BQ.1.1.28
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.28, S:P251L, ORF1b:P976S, on C18828T branch
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.28

BQ.1.1.29 lineage
type: BQ.1.1.29
type: NamedIndividual
label: BQ.1.1.29
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.29, S:Q613H
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.29

BQ.1.1.30 lineage
type: BQ.1.1.30
type: NamedIndividual
label: BQ.1.1.30
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.30, Canada, S:V445A
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.30

BQ.1.1.31 lineage
type: BQ.1.1.31
type: NamedIndividual
label: BQ.1.1.31
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.31, Indonesia/global, S:S256L
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.31

BQ.1.1.32 lineage
type: BQ.1.1.32
type: NamedIndividual
label: BQ.1.1.32
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from pango-designation issue #1402
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.32

DT.1 lineage
type: DT.1
type: NamedIndividual
label: DT.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.1 England, S:F494P, from issue #1484
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.32.1

BQ.1.1.34 lineage
type: BQ.1.1.34
type: NamedIndividual
label: BQ.1.1.34
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.1.34, England, S:144- & S:494P, from issue #1483
has for alias: B.1.1.529.5.3.1.1.1.1.1.1.34

BQ.1.2 lineage
type: BQ.1.2
type: NamedIndividual
label: BQ.1.2
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082
has for alias: B.1.1.529.5.3.1.1.1.1.1.2

BQ.1.3 lineage
type: BQ.1.3
type: NamedIndividual
label: BQ.1.3
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from issue #1082
has for alias: B.1.1.529.5.3.1.1.1.1.1.3

BQ.1.4 lineage
type: BQ.1.4
type: NamedIndividual
label: BQ.1.4
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.4, England and Denmark, defined by S:R190T
has for alias: B.1.1.529.5.3.1.1.1.1.1.4

BQ.1.5 lineage
type: BQ.1.5
type: NamedIndividual
label: BQ.1.5
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.5, defined by ORF1b:T1076I
has for alias: B.1.1.529.5.3.1.1.1.1.1.5

BQ.1.6 lineage
type: BQ.1.6
type: NamedIndividual
label: BQ.1.6
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.6, US lineage, defined by ORF1a:G94C
has for alias: B.1.1.529.5.3.1.1.1.1.1.6

BQ.1.7 lineage
type: BQ.1.7
type: NamedIndividual
label: BQ.1.7
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.7, defined by S:L54F
has for alias: B.1.1.529.5.3.1.1.1.1.1.7

BQ.1.8 lineage
type: BQ.1.8
type: NamedIndividual
label: BQ.1.8
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.8, defined by ORF1a:S505F and S:Y144-, issue #1202
has for alias: B.1.1.529.5.3.1.1.1.1.1.8

BQ.1.8.1 lineage
type: BQ.1.8.1
type: NamedIndividual
label: BQ.1.8.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.8.1, England/Australia, S:256L
has for alias: B.1.1.529.5.3.1.1.1.1.1.8.1

BQ.1.8.2 lineage
type: BQ.1.8.2
type: NamedIndividual
label: BQ.1.8.2
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.8.2, England/Scotland, S:A688V
has for alias: B.1.1.529.5.3.1.1.1.1.1.8.2

BQ.1.9 lineage
type: BQ.1.9
type: NamedIndividual
label: BQ.1.9
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.9, US lineage, defined by ORF1a:V2604I followed by S:346T (independent from BQ.1.1)
has for alias: B.1.1.529.5.3.1.1.1.1.1.9

BQ.1.10 lineage
type: BQ.1.10
type: NamedIndividual
label: BQ.1.10
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.10, international lineage, 27600T
has for alias: B.1.1.529.5.3.1.1.1.1.1.10

BQ.1.10.1 lineage
type: BQ.1.10.1
type: NamedIndividual
label: BQ.1.10.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.10.1, Italy/England/Denmark, S:H146L, issue #1189
has for alias: B.1.1.529.5.3.1.1.1.1.1.10.1

BQ.1.11 lineage
type: BQ.1.11
type: NamedIndividual
label: BQ.1.11
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.11, international lineage, 29541T
has for alias: B.1.1.529.5.3.1.1.1.1.1.11

BQ.1.12 lineage
type: BQ.1.12
type: NamedIndividual
label: BQ.1.12
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.12, international lineage, 28849T
has for alias: B.1.1.529.5.3.1.1.1.1.1.12

BQ.1.13 lineage
type: BQ.1.13
type: NamedIndividual
label: BQ.1.13
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.13, international lineage, ORF1a:V627I
has for alias: B.1.1.529.5.3.1.1.1.1.1.13

BQ.1.13.1 lineage
type: BQ.1.13.1
type: NamedIndividual
label: BQ.1.13.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.13.1 found mainly in USA and Europe, from pango-designation issue #1400
has for alias: B.1.1.529.5.3.1.1.1.1.1.13.1

BQ.1.14 lineage
type: BQ.1.14
type: NamedIndividual
label: BQ.1.14
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.14, international lineage, 18570A
has for alias: B.1.1.529.5.3.1.1.1.1.1.14

BQ.1.15 lineage
type: BQ.1.15
type: NamedIndividual
label: BQ.1.15
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.15, international lineage, ORF1a:L3116F
has for alias: B.1.1.529.5.3.1.1.1.1.1.15

BQ.1.16 lineage
type: BQ.1.16
type: NamedIndividual
label: BQ.1.16
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.16, international lineage, ORF1a:A540V
has for alias: B.1.1.529.5.3.1.1.1.1.1.16

BQ.1.17 lineage
type: BQ.1.17
type: NamedIndividual
label: BQ.1.17
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.17, Denmark/Germany, S:K444T mutated further to S:444M
has for alias: B.1.1.529.5.3.1.1.1.1.1.17

BQ.1.18 lineage
type: BQ.1.18
type: NamedIndividual
label: BQ.1.18
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.18, Denmark/Austria, E:P71S, then S:R346T and S:Y144-
has for alias: B.1.1.529.5.3.1.1.1.1.1.18

BQ.1.19 lineage
type: BQ.1.19
type: NamedIndividual
label: BQ.1.19
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.19, S:S494P
has for alias: B.1.1.529.5.3.1.1.1.1.1.19

BQ.1.20 lineage
type: BQ.1.20
type: NamedIndividual
label: BQ.1.20
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.20, S:A348S
has for alias: B.1.1.529.5.3.1.1.1.1.1.20

BQ.1.21 lineage
type: BQ.1.21
type: NamedIndividual
label: BQ.1.21
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.21, England/France, S:R346S, S:Y144-
has for alias: B.1.1.529.5.3.1.1.1.1.1.21

BQ.1.22 lineage
type: BQ.1.22
type: NamedIndividual
label: BQ.1.22
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.22, Canada, S:R346T after C26681T
has for alias: B.1.1.529.5.3.1.1.1.1.1.22

BQ.1.23 lineage
type: BQ.1.23
type: NamedIndividual
label: BQ.1.23
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.23, Singapore/Indonesia/Australia, A2653G and S:Y144-
has for alias: B.1.1.529.5.3.1.1.1.1.1.23

BQ.1.24 lineage
type: BQ.1.24
type: NamedIndividual
label: BQ.1.24
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.24, South Africa, S:T240I, S:R346T, #1240
has for alias: B.1.1.529.5.3.1.1.1.1.1.24

BQ.1.25 lineage
type: BQ.1.25
type: NamedIndividual
label: BQ.1.25
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.25, S:R346T, T8038C, T25569C, G26031A
has for alias: B.1.1.529.5.3.1.1.1.1.1.25

BQ.1.25.1 lineage
type: BQ.1.25.1
type: NamedIndividual
label: BQ.1.25.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.25.1, found mainly in USA, from pango-designation issue #1451
has for alias: B.1.1.529.5.3.1.1.1.1.1.25.1

BQ.1.26 lineage
type: BQ.1.26
type: NamedIndividual
label: BQ.1.26
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.26, found mainly in Denmark, from pango-designation issue #1315
has for alias: B.1.1.529.5.3.1.1.1.1.1.26

BQ.1.26.1 lineage
type: BQ.1.26.1
type: NamedIndividual
label: BQ.1.26.1
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.26.1, found mainly in Denmark, from pango-designation issue #1369
has for alias: B.1.1.529.5.3.1.1.1.1.1.26.1

BQ.1.27 lineage
type: BQ.1.27
type: NamedIndividual
label: BQ.1.27
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.27, USA/England, S:V445A
has for alias: B.1.1.529.5.3.1.1.1.1.1.27

BQ.1.28 lineage
type: BQ.1.28
type: NamedIndividual
label: BQ.1.28
has for description: Alias of B.1.1.529.5.3.1.1.1.1.1.28, found mainly in USA, from pango-designation issue #1415
has for alias: B.1.1.529.5.3.1.1.1.1.1.28

BQ.2 lineage
type: BQ.2
type: NamedIndividual
label: BQ.2
has for description: Alias of B.1.1.529.5.3.1.1.1.1.2, international, S:A522P
has for alias: B.1.1.529.5.3.1.1.1.1.2

BE.1.2 lineage
type: BE.1.2
type: NamedIndividual
label: BE.1.2
has for description: Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from pango-designation issue #923
has for alias: B.1.1.529.5.3.1.1.2

BE.1.1.2 lineage
type: BE.1.1.2
type: NamedIndividual
label: BE.1.1.2
has for description: Alias of B.1.1.529.5.3.1.1.1.2, Germany lineage, defined by ORF9b:S50L
has for alias: B.1.1.529.5.3.1.1.1.2

CC.1 lineage
type: CC.1
type: NamedIndividual
label: CC.1
has for description: Alias of B.1.1.529.5.3.1.1.1.2.1, Germany lineage, defined by S:N450D
has for alias: B.1.1.529.5.3.1.1.1.2.1

BE.1.2.1 lineage
type: BE.1.2.1
type: NamedIndividual
label: BE.1.2.1
has for description: Alias of B.1.1.529.5.3.1.1.2.1, Panama, Canada, USA, defined by S:V445A, from issue #1095
has for alias: B.1.1.529.5.3.1.1.2.1

BE.1.3 lineage
type: BE.1.3
type: NamedIndividual
label: BE.1.3
has for description: Alias of B.1.1.529.5.3.1.1.3, Finland and Estonia lineage
has for alias: B.1.1.529.5.3.1.1.3

BE.1.4 lineage
type: BE.1.4
type: NamedIndividual
label: BE.1.4
has for description: Alias of B.1.1.529.5.3.1.1.4, America lineage, ORF1b:V1787I
has for alias: B.1.1.529.5.3.1.1.4

BE.1.4.1 lineage
type: BE.1.4.1
type: NamedIndividual
label: BE.1.4.1
has for description: Alias of B.1.1.529.5.3.1.1.4.1, S:A701V
has for alias: B.1.1.529.5.3.1.1.4.1

BE.1.4.2 lineage
type: BE.1.4.2
type: NamedIndividual
label: BE.1.4.2
has for description: Alias of B.1.1.529.5.3.1.1.4.2, S:R346T
has for alias: B.1.1.529.5.3.1.1.4.2

BE.1.4.3 lineage
type: BE.1.4.3
type: NamedIndividual
label: BE.1.4.3
has for description: Alias of B.1.1.529.5.3.1.1.4.3, Mexico, S:V445A
has for alias: B.1.1.529.5.3.1.1.4.3

BE.1.4.4 lineage
type: BE.1.4.4
type: NamedIndividual
label: BE.1.4.4
has for description: Alias of B.1.1.529.5.3.1.1.4.4, S:L176F
has for alias: B.1.1.529.5.3.1.1.4.4

BE.2 lineage
type: BE.2
type: NamedIndividual
label: BE.2
has for description: Alias of B.1.1.529.5.3.1.2, Belgium lineage
has for alias: B.1.1.529.5.3.1.2

BE.3 lineage
type: BE.3
type: NamedIndividual
label: BE.3
has for description: Alias of B.1.1.529.5.3.1.3, USA lineage
has for alias: B.1.1.529.5.3.1.3

BE.4 lineage
type: BE.4
type: NamedIndividual
label: BE.4
has for description: Alias of B.1.1.529.5.3.1.4, Bangladesh, defined by ORF1a:T3308N, from issue #1115
has for alias: B.1.1.529.5.3.1.4

BE.4.1 lineage
type: BE.4.1
type: NamedIndividual
label: BE.4.1
has for description: Alias of B.1.1.529.5.3.1.4.1, Bangladesh, defined by S:P209L, S:R346T, from issue #1115
has for alias: B.1.1.529.5.3.1.4.1

BE.4.1.1 lineage
type: BE.4.1.1
type: NamedIndividual
label: BE.4.1.1
has for description: Alias of B.1.1.529.5.3.1.4.1.1, Bangladesh, defined by S:K444R, from issue #1115
has for alias: B.1.1.529.5.3.1.4.1.1

CQ.1 lineage
type: CQ.1
type: NamedIndividual
label: CQ.1
has for description: Alias of B.1.1.529.5.3.1.4.1.1.1, Bangladesh, defined by S:Y144- and 11866T
has for alias: B.1.1.529.5.3.1.4.1.1.1

CQ.1.1 lineage
type: CQ.1.1
type: NamedIndividual
label: CQ.1.1
has for description: Alias of B.1.1.529.5.3.1.4.1.1.1.1, Canada/England, S:A262S
has for alias: B.1.1.529.5.3.1.4.1.1.1.1

CQ.2 lineage
type: CQ.2
type: NamedIndividual
label: CQ.2
has for description: Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/US, defined by S:V445A
has for alias: B.1.1.529.5.3.1.4.1.1.2

BE.4.2 lineage
type: BE.4.2
type: NamedIndividual
label: BE.4.2
has for description: Alias of B.1.1.529.5.3.1.4.2, Bangladesh, defined by S:K444N & S:N460K, from issue #1114
has for alias: B.1.1.529.5.3.1.4.2

BE.5 lineage
type: BE.5
type: NamedIndividual
label: BE.5
has for description: Alias of B.1.1.529.5.3.1.5, South Africa, S:R346T, #1281
has for alias: B.1.1.529.5.3.1.5

BE.6 lineage
type: BE.6
type: NamedIndividual
label: BE.6
has for description: Alias of B.1.1.529.5.3.1.6, France, S:R346S
has for alias: B.1.1.529.5.3.1.6

BE.7 lineage
type: BE.7
type: NamedIndividual
label: BE.7
has for description: Alias of B.1.1.529.5.3.1.7, South Africa, S:R346T, #1280
has for alias: B.1.1.529.5.3.1.7

BE.8 lineage
type: BE.8
type: NamedIndividual
label: BE.8
has for description: Alias of B.1.1.529.5.3.1.8, South Africa, S:R346T, #1278
has for alias: B.1.1.529.5.3.1.8

BE.9 lineage
type: BE.9
type: NamedIndividual
label: BE.9
has for description: Alias of B.1.1.529.5.3.1.9, found mainly in Brazil, from pango-designation issue #1302
has for alias: B.1.1.529.5.3.1.9

BE.10 lineage
type: BE.10
type: NamedIndividual
label: BE.10
has for description: Alias of B.1.1.529.5.3.1.10, S:K444T, S:N460K, mainly Brazil, from issue #1411
has for alias: B.1.1.529.5.3.1.10

BA.5.3.2 lineage
type: BA.5.3.2
type: NamedIndividual
label: BA.5.3.2
has for description: Alias of B.1.1.529.5.3.2, mainly found in Germany, from pango-designation issue #697
has for alias: B.1.1.529.5.3.2

BA.5.3.3 lineage
type: BA.5.3.3
type: NamedIndividual
label: BA.5.3.3
has for description: Alias of B.1.1.529.5.3.3, UK lineage
has for alias: B.1.1.529.5.3.3

BA.5.3.4 lineage
type: BA.5.3.4
type: NamedIndividual
label: BA.5.3.4
has for description: Alias of B.1.1.529.5.3.4, Germany lineage
has for alias: B.1.1.529.5.3.4

BA.5.3.5 lineage
type: BA.5.3.5
type: NamedIndividual
label: BA.5.3.5
has for description: Alias of B.1.1.529.5.3.5, mainly found in South Africa, from pango-designation issue #1042
has for alias: B.1.1.529.5.3.5

del82/86
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: BA.5.3.5 lineage
mutation name: del82/86

del55/71
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: BA.5.3.5 lineage
mutation name: del55/71

BA.5.5 lineage
type: BA.5.5
type: NamedIndividual
label: BA.5.5
has for description: Alias of B.1.1.529.5.5, mainly found in USA, from pango-designation issue #656
has for alias: B.1.1.529.5.5

BA.5.5.1 lineage
type: BA.5.5.1
type: NamedIndividual
label: BA.5.5.1
has for description: Alias of B.1.1.529.5.5.1, mainly found in USA, from pango-designation issue #873
has for alias: B.1.1.529.5.5.1

BA.5.5.2 lineage
type: BA.5.5.2
type: NamedIndividual
label: BA.5.5.2
has for description: Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from pango-designation issue #938
has for alias: B.1.1.529.5.5.2

BA.5.5.3 lineage
type: BA.5.5.3
type: NamedIndividual
label: BA.5.5.3
has for description: Alias of B.1.1.529.5.5.3, USA lineage, from pango-designation issue #1015
has for alias: B.1.1.529.5.5.3

BA.5.6 lineage
type: BA.5.6
type: NamedIndividual
label: BA.5.6
has for description: Alias of B.1.1.529.5.6, USA lineage
has for alias: B.1.1.529.5.6

a1312v
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.5.6 lineage
mutation name: a1312v

t2537i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: BA.5.6 lineage
has for lineage: B.1.616 lineage
mutation name: t2537i

BA.5.6.1 lineage
type: BA.5.6.1
type: NamedIndividual
label: BA.5.6.1
has for description: Alias of B.1.1.529.5.6.1, Peru lineage
has for alias: B.1.1.529.5.6.1

BA.5.6.2 lineage
type: BA.5.6.2
type: NamedIndividual
label: BA.5.6.2
has for description: Alias of B.1.1.529.5.6.2, mainly found in USA, Belgium and Mexico, from pango-designation issue #903
has for alias: B.1.1.529.5.6.2

BA.5.6.3 lineage
type: BA.5.6.3
type: NamedIndividual
label: BA.5.6.3
has for description: Alias of B.1.1.529.5.6.3, mainly found in England, from pango-designation issue #1118
has for alias: B.1.1.529.5.6.3

BA.5.6.4 lineage
type: BA.5.6.4
type: NamedIndividual
label: BA.5.6.4
has for description: Alias of B.1.1.529.5.6.4, found in USA and Europe, from pango-designation issue #1191
has for alias: B.1.1.529.5.6.4

BW.1 lineage
type: BW.1
type: NamedIndividual
label: BW.1
has for description: Alias of B.1.1.529.5.6.2.1, Mexico lineage, from pango-designation issue #1059, defined by S:460K
has for alias: B.1.1.529.5.6.2.1

BW.1.1 lineage
type: BW.1.1
type: NamedIndividual
label: BW.1.1
has for description: Alias of B.1.1.529.5.6.2.1.1, Mexico lineage, defined by S:V486A, issue #1341
has for alias: B.1.1.529.5.6.2.1.1

BA.5.7 lineage
type: BA.5.7
type: NamedIndividual
label: BA.5.7
has for description: Alias of B.1.1.529.5.7, Australia lineage
has for alias: B.1.1.529.5.7

BA.5.8 lineage
type: BA.5.8
type: NamedIndividual
label: BA.5.8
has for description: Alias of B.1.1.529.5.8, mainly found in England, USA, Denmark and Scotland, from pango-designation issue #743
has for alias: B.1.1.529.5.8

BA.5.9 lineage
type: BA.5.9
type: NamedIndividual
label: BA.5.9
has for description: Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from pango-designation issue #753
has for alias: B.1.1.529.5.9

BA.5.10 lineage
type: BA.5.10
type: NamedIndividual
label: BA.5.10
has for description: Alias of B.1.1.529.5.10, mainly found in Philippines, Canada, and USA, from pango-designation issue #936
has for alias: B.1.1.529.5.10

BA.5.10.1 lineage
type: BA.5.10.1
type: NamedIndividual
label: BA.5.10.1
has for description: Alias of B.1.1.529.5.10.1, mainly from Philippines, defined by S:346T, from pango-designation issue #1031
has for alias: B.1.1.529.5.10.1

DF.1 lineage
type: DF.1
type: NamedIndividual
label: DF.1
has for description: Alias of B.1.1.529.5.10.1.1, found mainly in UK, from pango-designation issue #1270
has for alias: B.1.1.529.5.10.1.1

DF.1.1 lineage
type: DF.1.1
type: NamedIndividual
label: DF.1.1
has for description: Alias of B.1.1.529.5.10.1.1.1 found mainly in USA, from pango-designation issue #1494
has for alias: B.1.1.529.5.10.1.1.1

BA.5.11 lineage
type: BA.5.11
type: NamedIndividual
label: BA.5.11
has for description: Alias of B.1.1.529.5.11, South Africa, C1627T, S:R346T, #1277
has for alias: B.1.1.529.5.11

B.1.2 lineage
type: B.1.2
type: NamedIndividual
label: B.1.2
has for description: USA

B.1.3 lineage
type: B.1.3
type: NamedIndividual
label: B.1.3
has for description: USA lineage

B.1.6 lineage
type: B.1.6
type: NamedIndividual
label: B.1.6
has for description: Belgian lineage

B.1.8 lineage
type: B.1.8
type: NamedIndividual
label: B.1.8
has for description: Netherlands, South Africa, Denmark, USA

B.1.12 lineage
type: B.1.12
type: NamedIndividual
label: B.1.12
has for description: Luxembourg lineage (also England, Belgium etc.)

B.1.13 lineage
type: B.1.13
type: NamedIndividual
label: B.1.13
has for description: UK lineage

B.1.14 lineage
type: B.1.14
type: NamedIndividual
label: B.1.14
has for description: USA lineage (CA)

B.1.22 lineage
type: B.1.22
type: NamedIndividual
label: B.1.22
has for description: Netherlands lineage

B.1.22.1 lineage
type: B.1.22.1
type: NamedIndividual
label: B.1.22.1
has for description: Curacao

B.1.23 lineage
type: B.1.23
type: NamedIndividual
label: B.1.23
has for description: New Zealand / Australia

B.1.35 lineage
type: B.1.35
type: NamedIndividual
label: B.1.35
has for description: Wales lineage

B.1.36 lineage
type: B.1.36
type: NamedIndividual
label: B.1.36
has for description: Global many sublineages (see below)

B.1.36.1 lineage
type: B.1.36.1
type: NamedIndividual
label: B.1.36.1
has for description: European/Denmark

B.1.36.2 lineage
type: B.1.36.2
type: NamedIndividual
label: B.1.36.2
has for description: UK

B.1.36.7 lineage
type: B.1.36.7
type: NamedIndividual
label: B.1.36.7
has for description: UK (reassigned from Oman lineage)

B.1.36.8 lineage
type: B.1.36.8
type: NamedIndividual
label: B.1.36.8
has for description: Predominantly Indian lineage with global records (inc. Canada)

B.1.36.9 lineage
type: B.1.36.9
type: NamedIndividual
label: B.1.36.9
has for description: UK

B.1.36.10 lineage
type: B.1.36.10
type: NamedIndividual
label: B.1.36.10
has for description: Jordan/Saudi Arabia (single recent record from USA)

B.1.36.12 lineage
type: B.1.36.12
type: NamedIndividual
label: B.1.36.12
has for description: England

B.1.36.16 lineage
type: B.1.36.16
type: NamedIndividual
label: B.1.36.16
has for description: SE Asia

B.1.36.17 lineage
type: B.1.36.17
type: NamedIndividual
label: B.1.36.17
has for description: UK lineage

B.1.36.18 lineage
type: B.1.36.18
type: NamedIndividual
label: B.1.36.18
has for description: Canadian lineage

B.1.36.19 lineage
type: B.1.36.19
type: NamedIndividual
label: B.1.36.19
has for description: Oceana

B.1.36.20 lineage
type: B.1.36.20
type: NamedIndividual
label: B.1.36.20
has for description: Mainly Scotland

B.1.36.21 lineage
type: B.1.36.21
type: NamedIndividual
label: B.1.36.21
has for description: Norway lineage

B.1.36.22 lineage
type: B.1.36.22
type: NamedIndividual
label: B.1.36.22
has for description: Lineage with sequences majoritively from Finland

B.1.36.23 lineage
type: B.1.36.23
type: NamedIndividual
label: B.1.36.23
has for description: UK

B.1.36.24 lineage
type: B.1.36.24
type: NamedIndividual
label: B.1.36.24
has for description: England with Global records

B.1.36.25 lineage
type: B.1.36.25
type: NamedIndividual
label: B.1.36.25
has for description: Denmark

B.1.36.26 lineage
type: B.1.36.26
type: NamedIndividual
label: B.1.36.26
has for description: Canada/USA

B.1.36.28 lineage
type: B.1.36.28
type: NamedIndividual
label: B.1.36.28
has for description: UK

B.1.36.27 lineage
type: B.1.36.27
type: NamedIndividual
label: B.1.36.27
has for description: Hong Kong lineage, initially associated with travellers from Nepal. Epidemiologically and phylogenetically supported.

B.1.36.29 lineage
type: B.1.36.29
type: NamedIndividual
label: B.1.36.29
has for description: India

B.1.36.31 lineage
type: B.1.36.31
type: NamedIndividual
label: B.1.36.31
has for description: UK/Global

B.1.36.33 lineage
type: B.1.36.33
type: NamedIndividual
label: B.1.36.33
has for description: Denmark

B.1.36.34 lineage
type: B.1.36.34
type: NamedIndividual
label: B.1.36.34
has for description: UK

B.1.36.35 lineage
type: B.1.36.35
type: NamedIndividual
label: B.1.36.35
has for description: European/Switzerland

B.1.36.36 lineage
type: B.1.36.36
type: NamedIndividual
label: B.1.36.36
has for description: Canada

B.1.36.37 lineage
type: B.1.36.37
type: NamedIndividual
label: B.1.36.37
has for description: Canada

B.1.36.38 lineage
type: B.1.36.38
type: NamedIndividual
label: B.1.36.38
has for description: Canada/UK

B.1.36.39 lineage
type: B.1.36.39
type: NamedIndividual
label: B.1.36.39
has for description: UK

B.1.37 lineage
type: B.1.37
type: NamedIndividual
label: B.1.37
has for description: USA lineage

B.1.38 lineage
type: B.1.38
type: NamedIndividual
label: B.1.38
has for description: USA

B.1.39 lineage
type: B.1.39
type: NamedIndividual
label: B.1.39
has for description: Denmark

B.1.40 lineage
type: B.1.40
type: NamedIndividual
label: B.1.40
has for description: Scotland lineage

B.1.44 lineage
type: B.1.44
type: NamedIndividual
label: B.1.44
has for description: Wales lineage

B.1.67 lineage
type: B.1.67
type: NamedIndividual
label: B.1.67
has for description: Wales lineage

B.1.69 lineage
type: B.1.69
type: NamedIndividual
label: B.1.69
has for description: Scotland

B.1.70 lineage
type: B.1.70
type: NamedIndividual
label: B.1.70
has for description: Scotland

B.1.76 lineage
type: B.1.76
type: NamedIndividual
label: B.1.76
has for description: English Lineage

B.1.77 lineage
type: B.1.77
type: NamedIndividual
label: B.1.77
has for description: English lineage

B.1.78 lineage
type: B.1.78
type: NamedIndividual
label: B.1.78
has for description: Netherlands lineage

B.1.81 lineage
type: B.1.81
type: NamedIndividual
label: B.1.81
has for description: UK lineage

B.1.83 lineage
type: B.1.83
type: NamedIndividual
label: B.1.83
has for description: Belgian lineage

B.1.84 lineage
type: B.1.84
type: NamedIndividual
label: B.1.84
has for description: DRC lineage

B.1.91 lineage
type: B.1.91
type: NamedIndividual
label: B.1.91
has for description: Portuguese lineage

B.1.93 lineage
type: B.1.93
type: NamedIndividual
label: B.1.93
has for description: UK lineage

B.1.94 lineage
type: B.1.94
type: NamedIndividual
label: B.1.94
has for description: Luxembourg

B.1.96 lineage
type: B.1.96
type: NamedIndividual
label: B.1.96
has for description: Netherlands lineage

B.1.97 lineage
type: B.1.97
type: NamedIndividual
label: B.1.97
has for description: England

B.1.103 lineage
type: B.1.103
type: NamedIndividual
label: B.1.103
has for description: USA

B.1.104 lineage
type: B.1.104
type: NamedIndividual
label: B.1.104
has for description: England

B.1.105 lineage
type: B.1.105
type: NamedIndividual
label: B.1.105
has for description: England

B.1.106 lineage
type: B.1.106
type: NamedIndividual
label: B.1.106
has for description: USA

B.1.108 lineage
type: B.1.108
type: NamedIndividual
label: B.1.108
has for description: USA

B.1.110 lineage
type: B.1.110
type: NamedIndividual
label: B.1.110
has for description: Chilean/ US and Australia lineage

B.1.110.1 lineage
type: B.1.110.1
type: NamedIndividual
label: B.1.110.1
has for description: Chilean/ US lineage

B.1.110.2 lineage
type: B.1.110.2
type: NamedIndividual
label: B.1.110.2
has for description: UK lineage

B.1.110.3 lineage
type: B.1.110.3
type: NamedIndividual
label: B.1.110.3
has for description: USA lineage

B.1.111 lineage
type: B.1.111
type: NamedIndividual
label: B.1.111
has for description: South/ Central American lineage (mostly Trinidad and Colombia, an a small cluster from Norwich)

B.1.112 lineage
type: B.1.112
type: NamedIndividual
label: B.1.112
has for description: USA/UT

B.1.113 lineage
type: B.1.113
type: NamedIndividual
label: B.1.113
has for description: Indian lineage

B.1.115 lineage
type: B.1.115
type: NamedIndividual
label: B.1.115
has for description: Israel and UK

B.1.116 lineage
type: B.1.116
type: NamedIndividual
label: B.1.116
has for description: USA lineage

B.1.117 lineage
type: B.1.117
type: NamedIndividual
label: B.1.117
has for description: UK lineage

B.1.118 lineage
type: B.1.118
type: NamedIndividual
label: B.1.118
has for description: Danish

B.1.119 lineage
type: B.1.119
type: NamedIndividual
label: B.1.119
has for description: USA lineage

B.1.120 lineage
type: B.1.120
type: NamedIndividual
label: B.1.120
has for description: Wales lineage

B.1.124 lineage
type: B.1.124
type: NamedIndividual
label: B.1.124
has for description: USA/WA

B.1.126 lineage
type: B.1.126
type: NamedIndividual
label: B.1.126
has for description: USA (MN) lineage

B.1.127 lineage
type: B.1.127
type: NamedIndividual
label: B.1.127
has for description: Denmark

B.1.128 lineage
type: B.1.128
type: NamedIndividual
label: B.1.128
has for description: Canada, Switzerland and DRC

B.1.131 lineage
type: B.1.131
type: NamedIndividual
label: B.1.131
has for description: European lineage

B.1.134 lineage
type: B.1.134
type: NamedIndividual
label: B.1.134
has for description: USA lineage

B.1.137 lineage
type: B.1.137
type: NamedIndividual
label: B.1.137
has for description: USA lineage

B.1.139 lineage
type: B.1.139
type: NamedIndividual
label: B.1.139
has for description: USA lineage

B.1.140 lineage
type: B.1.140
type: NamedIndividual
label: B.1.140
has for description: South African lineage

B.1.142 lineage
type: B.1.142
type: NamedIndividual
label: B.1.142
has for description: Wales lineage

B.1.143 lineage
type: B.1.143
type: NamedIndividual
label: B.1.143
has for description: Indian lineage

B.1.145 lineage
type: B.1.145
type: NamedIndividual
label: B.1.145
has for description: Indian lineage

B.1.146 lineage
type: B.1.146
type: NamedIndividual
label: B.1.146
has for description: Swiss lineage

B.1.147 lineage
type: B.1.147
type: NamedIndividual
label: B.1.147
has for description: Canadian lineage

B.1.149 lineage
type: B.1.149
type: NamedIndividual
label: B.1.149
has for description: DRC lineage

B.1.151 lineage
type: B.1.151
type: NamedIndividual
label: B.1.151
has for description: UK lineage

B.1.153 lineage
type: B.1.153
type: NamedIndividual
label: B.1.153
has for description: English lineage with some Australian, New Zealand and European sequences

B.1.157 lineage
type: B.1.157
type: NamedIndividual
label: B.1.157
has for description: UK/ Spanish lineage

B.1.158 lineage
type: B.1.158
type: NamedIndividual
label: B.1.158
has for description: Finland lineage

B.1.159 lineage
type: B.1.159
type: NamedIndividual
label: B.1.159
has for description: French lineage

B.1.160 lineage
type: B.1.160
type: NamedIndividual
label: B.1.160
has for description: Large European lineage, sequences from BeNeLuX, Denmark, Switzerland, Hungary and UK.

B.1.160.7 lineage
type: B.1.160.7
type: NamedIndividual
label: B.1.160.7
has for description: English Lineage

B.1.160.8 lineage
type: B.1.160.8
type: NamedIndividual
label: B.1.160.8
has for description: Denmark

B.1.160.9 lineage
type: B.1.160.9
type: NamedIndividual
label: B.1.160.9
has for description: Switzerland

B.1.160.10 lineage
type: B.1.160.10
type: NamedIndividual
label: B.1.160.10
has for description: Switzerland

B.1.160.11 lineage
type: B.1.160.11
type: NamedIndividual
label: B.1.160.11
has for description: Switzerland

B.1.160.12 lineage
type: B.1.160.12
type: NamedIndividual
label: B.1.160.12
has for description: Switzerland

B.1.160.13 lineage
type: B.1.160.13
type: NamedIndividual
label: B.1.160.13
has for description: Netherlands lineage

B.1.160.14 lineage
type: B.1.160.14
type: NamedIndividual
label: B.1.160.14
has for description: Switzerland

B.1.160.15 lineage
type: B.1.160.15
type: NamedIndividual
label: B.1.160.15
has for description: Mostly Switzerland

B.1.160.16 lineage
type: B.1.160.16
type: NamedIndividual
label: B.1.160.16
has for description: Mostly Switzerland

AB.1 lineage
type: AB.1
type: NamedIndividual
label: AB.1
has for description: Alias of B.1.160.16.1, Denmark, grown out of big swiss cluster
has for alias: B.1.160.16.1

B.1.160.17 lineage
type: B.1.160.17
type: NamedIndividual
label: B.1.160.17
has for description: Denmark

B.1.160.18 lineage
type: B.1.160.18
type: NamedIndividual
label: B.1.160.18
has for description: Mayotte

B.1.160.19 lineage
type: B.1.160.19
type: NamedIndividual
label: B.1.160.19
has for description: Switzerland

B.1.160.20 lineage
type: B.1.160.20
type: NamedIndividual
label: B.1.160.20
has for description: Switzerland

B.1.160.21 lineage
type: B.1.160.21
type: NamedIndividual
label: B.1.160.21
has for description: Luxembourg

B.1.160.22 lineage
type: B.1.160.22
type: NamedIndividual
label: B.1.160.22
has for description: Switzerland, Germany, Austria

B.1.160.23 lineage
type: B.1.160.23
type: NamedIndividual
label: B.1.160.23
has for description: England

B.1.160.24 lineage
type: B.1.160.24
type: NamedIndividual
label: B.1.160.24
has for description: Denmark

B.1.160.25 lineage
type: B.1.160.25
type: NamedIndividual
label: B.1.160.25
has for description: French Guiana

B.1.160.26 lineage
type: B.1.160.26
type: NamedIndividual
label: B.1.160.26
has for description: Mostly Switzerland, a little Europe

B.1.160.27 lineage
type: B.1.160.27
type: NamedIndividual
label: B.1.160.27
has for description: Mayotte

B.1.160.28 lineage
type: B.1.160.28
type: NamedIndividual
label: B.1.160.28
has for description: Belgium and Luxembourg

B.1.160.29 lineage
type: B.1.160.29
type: NamedIndividual
label: B.1.160.29
has for description: Switzerland

B.1.160.30 lineage
type: B.1.160.30
type: NamedIndividual
label: B.1.160.30
has for description: Switzerland

B.1.160.31 lineage
type: B.1.160.31
type: NamedIndividual
label: B.1.160.31
has for description: Switzerland

B.1.160.32 lineage
type: B.1.160.32
type: NamedIndividual
label: B.1.160.32
has for description: Switzerland

B.1.160.33 lineage
type: B.1.160.33
type: NamedIndividual
label: B.1.160.33
has for description: Was part of B.1.160.7 but this is now split on tree. English lineage last seen 2020-11-18 in uk, but long branch to a recent French sample sticking out

B.1.161 lineage
type: B.1.161
type: NamedIndividual
label: B.1.161
has for description: USA

B.1.162 lineage
type: B.1.162
type: NamedIndividual
label: B.1.162
has for description: USA lineage

B.1.163 lineage
type: B.1.163
type: NamedIndividual
label: B.1.163
has for description: USA

B.1.164 lineage
type: B.1.164
type: NamedIndividual
label: B.1.164
has for description: Eastern Europe

B.1.165 lineage
type: B.1.165
type: NamedIndividual
label: B.1.165
has for description: England

B.1.166 lineage
type: B.1.166
type: NamedIndividual
label: B.1.166
has for description: USA lineage

B.1.167 lineage
type: B.1.167
type: NamedIndividual
label: B.1.167
has for description: Canada, England

B.1.168 lineage
type: B.1.168
type: NamedIndividual
label: B.1.168
has for description: Scottish lineage

B.1.169 lineage
type: B.1.169
type: NamedIndividual
label: B.1.169
has for description: USA, some previously B.1.333.1

B.1.170 lineage
type: B.1.170
type: NamedIndividual
label: B.1.170
has for description: Egypt UAE

B.1.173 lineage
type: B.1.173
type: NamedIndividual
label: B.1.173
has for description: England

B.1.177 lineage
type: B.1.177
type: NamedIndividual
label: B.1.177
has for description: Major mostly European lineage, result of opening borders summer 2020

a222v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.177 lineage
has for lineage: B.1.177.32 lineage
has for lineage: B.1.177.44 lineage
has for lineage: AY.4.2.1 lineage
mutation name: a222v

v30l
type: SNP
type: NamedIndividual
has for gene: orf10
has for lineage: B.1.177 lineage
has for lineage: B.1.177.32 lineage
has for lineage: B.1.177.44 lineage
mutation name: v30l

B.1.177.2 lineage
type: B.1.177.2
type: NamedIndividual
label: B.1.177.2
has for description: English lineage

B.1.177.3 lineage
type: B.1.177.3
type: NamedIndividual
label: B.1.177.3
has for description: Welsh and English lineage

B.1.177.4 lineage
type: B.1.177.4
type: NamedIndividual
label: B.1.177.4
has for description: UK lineage

B.1.177.5 lineage
type: B.1.177.5
type: NamedIndividual
label: B.1.177.5
has for description: UK, mostly Scotland

B.1.177.6 lineage
type: B.1.177.6
type: NamedIndividual
label: B.1.177.6
has for description: Wales lineage

B.1.177.7 lineage
type: B.1.177.7
type: NamedIndividual
label: B.1.177.7
has for description: Wales lineage

B.1.177.8 lineage
type: B.1.177.8
type: NamedIndividual
label: B.1.177.8
has for description: Wales lineage

B.1.177.9 lineage
type: B.1.177.9
type: NamedIndividual
label: B.1.177.9
has for description: UK lineage

B.1.177.10 lineage
type: B.1.177.10
type: NamedIndividual
label: B.1.177.10
has for description: England

B.1.177.11 lineage
type: B.1.177.11
type: NamedIndividual
label: B.1.177.11
has for description: Scotland mostly, some England

B.1.177.12 lineage
type: B.1.177.12
type: NamedIndividual
label: B.1.177.12
has for description: Danish

B.1.177.14 lineage
type: B.1.177.14
type: NamedIndividual
label: B.1.177.14
has for description: Danish/ Norway lineage

B.1.177.15 lineage
type: B.1.177.15
type: NamedIndividual
label: B.1.177.15
has for description: English Welsh lineage

AA.1 lineage
type: AA.1
type: NamedIndividual
label: AA.1
has for description: Alias of B.1.177.15.1, European Lineage
has for alias: B.1.177.15.1

AA.2 lineage
type: AA.2
type: NamedIndividual
label: AA.2
has for description: Alias of B.1.177.15.2, Welsh Lineage
has for alias: B.1.177.15.2

AA.3 lineage
type: AA.3
type: NamedIndividual
label: AA.3
has for description: Alias of B.1.177.15.3, Welsh Lineage
has for alias: B.1.177.15.3

AA.4 lineage
type: AA.4
type: NamedIndividual
label: AA.4
has for description: Alias of B.1.177.15.4, Welsh Lineage
has for alias: B.1.177.15.4

AA.5 lineage
type: AA.5
type: NamedIndividual
label: AA.5
has for description: Alias of B.1.177.15.5, Welsh Lineage
has for alias: B.1.177.15.5

AA.6 lineage
type: AA.6
type: NamedIndividual
label: AA.6
has for description: Alias of B.1.177.15.6, Welsh Lineage
has for alias: B.1.177.15.6

AA.7 lineage
type: AA.7
type: NamedIndividual
label: AA.7
has for description: Alias of B.1.177.15.7, Welsh Lineage
has for alias: B.1.177.15.7

AA.8 lineage
type: AA.8
type: NamedIndividual
label: AA.8
has for description: Alias of B.1.177.15.8, Welsh Lineage
has for alias: B.1.177.15.8

B.1.177.16 lineage
type: B.1.177.16
type: NamedIndividual
label: B.1.177.16
has for description: UK lineage

B.1.177.17 lineage
type: B.1.177.17
type: NamedIndividual
label: B.1.177.17
has for description: UK, merged with B.1.177.13

B.1.177.18 lineage
type: B.1.177.18
type: NamedIndividual
label: B.1.177.18
has for description: England, some Wales, parent is mainland Europe

B.1.177.19 lineage
type: B.1.177.19
type: NamedIndividual
label: B.1.177.19
has for description: England, some Wales

B.1.177.20 lineage
type: B.1.177.20
type: NamedIndividual
label: B.1.177.20
has for description: England

B.1.177.21 lineage
type: B.1.177.21
type: NamedIndividual
label: B.1.177.21
has for description: Denmark

B.1.177.23 lineage
type: B.1.177.23
type: NamedIndividual
label: B.1.177.23
has for description: Swiss lineage

B.1.177.24 lineage
type: B.1.177.24
type: NamedIndividual
label: B.1.177.24
has for description: Danish lineage, contains some previous B.1.177.1

B.1.177.25 lineage
type: B.1.177.25
type: NamedIndividual
label: B.1.177.25
has for description: Gibraltar lineage

B.1.177.26 lineage
type: B.1.177.26
type: NamedIndividual
label: B.1.177.26
has for description: UK lineage

B.1.177.27 lineage
type: B.1.177.27
type: NamedIndividual
label: B.1.177.27
has for description: Danish

B.1.177.28 lineage
type: B.1.177.28
type: NamedIndividual
label: B.1.177.28
has for description: Swiss lineage

B.1.177.29 lineage
type: B.1.177.29
type: NamedIndividual
label: B.1.177.29
has for description: Spain

B.1.177.30 lineage
type: B.1.177.30
type: NamedIndividual
label: B.1.177.30
has for description: England

B.1.177.31 lineage
type: B.1.177.31
type: NamedIndividual
label: B.1.177.31
has for description: Swiss lineage

B.1.177.32 lineage
type: B.1.177.32
type: NamedIndividual
label: B.1.177.32
has for description: Swiss and Portuguese mostly

a1812v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.177.32 lineage
mutation name: a1812v

B.1.177.33 lineage
type: B.1.177.33
type: NamedIndividual
label: B.1.177.33
has for description: Mostly italian, some swiss, some english

B.1.177.34 lineage
type: B.1.177.34
type: NamedIndividual
label: B.1.177.34
has for description: Dutch

B.1.177.35 lineage
type: B.1.177.35
type: NamedIndividual
label: B.1.177.35
has for description: Danish, some Israel more recently

B.1.177.36 lineage
type: B.1.177.36
type: NamedIndividual
label: B.1.177.36
has for description: Dutch

B.1.177.37 lineage
type: B.1.177.37
type: NamedIndividual
label: B.1.177.37
has for description: Belgian

B.1.177.38 lineage
type: B.1.177.38
type: NamedIndividual
label: B.1.177.38
has for description: Dutch

B.1.177.39 lineage
type: B.1.177.39
type: NamedIndividual
label: B.1.177.39
has for description: Ireland andNorthern Ireland

B.1.177.40 lineage
type: B.1.177.40
type: NamedIndividual
label: B.1.177.40
has for description: Dutch

B.1.177.41 lineage
type: B.1.177.41
type: NamedIndividual
label: B.1.177.41
has for description: Danish and swedish

B.1.177.42 lineage
type: B.1.177.42
type: NamedIndividual
label: B.1.177.42
has for description: Danish

B.1.177.43 lineage
type: B.1.177.43
type: NamedIndividual
label: B.1.177.43
has for description: Swiss, then into Germany and Austria

B.1.177.44 lineage
type: B.1.177.44
type: NamedIndividual
label: B.1.177.44
has for description: Swiss mostly

m2667i
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.177.44 lineage
mutation name: m2667i

B.1.177.45 lineage
type: B.1.177.45
type: NamedIndividual
label: B.1.177.45
has for description: Iceland

B.1.177.46 lineage
type: B.1.177.46
type: NamedIndividual
label: B.1.177.46
has for description: Sweden and Denmark

B.1.177.47 lineage
type: B.1.177.47
type: NamedIndividual
label: B.1.177.47
has for description: England

B.1.177.48 lineage
type: B.1.177.48
type: NamedIndividual
label: B.1.177.48
has for description: UK lineage

B.1.177.49 lineage
type: B.1.177.49
type: NamedIndividual
label: B.1.177.49
has for description: Spanish lineage

B.1.177.50 lineage
type: B.1.177.50
type: NamedIndividual
label: B.1.177.50
has for description: Netherlands / Germany

Z.1 lineage
type: Z.1
type: NamedIndividual
label: Z.1
has for description: Alias of B.1.177.50.1, UK lineage
has for alias: B.1.177.50.1

B.1.177.51 lineage
type: B.1.177.51
type: NamedIndividual
label: B.1.177.51
has for description: European lineage

B.1.177.52 lineage
type: B.1.177.52
type: NamedIndividual
label: B.1.177.52
has for description: European lineage

Y.1 lineage
type: Y.1
type: NamedIndividual
label: Y.1
has for description: Alias of B.1.177.52.1, Portuguese lineage
has for alias: B.1.177.52.1

B.1.177.53 lineage
type: B.1.177.53
type: NamedIndividual
label: B.1.177.53
has for description: UK lineage

W.1 lineage
type: W.1
type: NamedIndividual
label: W.1
has for description: Alias of B.1.177.53.1, French and US lineage
has for alias: B.1.177.53.1

W.2 lineage
type: W.2
type: NamedIndividual
label: W.2
has for description: Alias of B.1.177.53.2, Dutch lineage
has for alias: B.1.177.53.2

W.3 lineage
type: W.3
type: NamedIndividual
label: W.3
has for description: Alias of B.1.177.53.3, UK lineage
has for alias: B.1.177.53.3

W.4 lineage
type: W.4
type: NamedIndividual
label: W.4
has for description: Alias of B.1.177.53.4, UK lineage
has for alias: B.1.177.53.4

B.1.177.54 lineage
type: B.1.177.54
type: NamedIndividual
label: B.1.177.54
has for description: UK lineage

V.1 lineage
type: V.1
type: NamedIndividual
label: V.1
has for description: Alias of B.1.177.54.1, Northern Irish and Irish lineage
has for alias: B.1.177.54.1

V.2 lineage
type: V.2
type: NamedIndividual
label: V.2
has for description: Alias of B.1.177.54.2, Northern Irish lineage
has for alias: B.1.177.54.2

B.1.177.55 lineage
type: B.1.177.55
type: NamedIndividual
label: B.1.177.55
has for description: England and Ireland

B.1.177.56 lineage
type: B.1.177.56
type: NamedIndividual
label: B.1.177.56
has for description: UK lineage

B.1.177.57 lineage
type: B.1.177.57
type: NamedIndividual
label: B.1.177.57
has for description: UK lineage

B.1.177.58 lineage
type: B.1.177.58
type: NamedIndividual
label: B.1.177.58
has for description: UK

B.1.177.59 lineage
type: B.1.177.59
type: NamedIndividual
label: B.1.177.59
has for description: Ireland

B.1.177.60 lineage
type: B.1.177.60
type: NamedIndividual
label: B.1.177.60
has for description: Northern Europe, mostly Lithuania

U.1 lineage
type: U.1
type: NamedIndividual
label: U.1
has for description: Alias of B.1.177.60.1, England
has for alias: B.1.177.60.1

U.2 lineage
type: U.2
type: NamedIndividual
label: U.2
has for description: Alias of B.1.177.60.2, Denmark
has for alias: B.1.177.60.2

U.3 lineage
type: U.3
type: NamedIndividual
label: U.3
has for description: Alias of B.1.177.60.3, Norway and Latvia
has for alias: B.1.177.60.3

B.1.177.61 lineage
type: B.1.177.61
type: NamedIndividual
label: B.1.177.61
has for description: Spain

B.1.177.62 lineage
type: B.1.177.62
type: NamedIndividual
label: B.1.177.62
has for description: Germany, Switzerland, Netherlands

B.1.177.63 lineage
type: B.1.177.63
type: NamedIndividual
label: B.1.177.63
has for description: Wales

B.1.177.64 lineage
type: B.1.177.64
type: NamedIndividual
label: B.1.177.64
has for description: Ireland

B.1.177.65 lineage
type: B.1.177.65
type: NamedIndividual
label: B.1.177.65
has for description: Wales

B.1.177.66 lineage
type: B.1.177.66
type: NamedIndividual
label: B.1.177.66
has for description: Irish lineage

B.1.177.67 lineage
type: B.1.177.67
type: NamedIndividual
label: B.1.177.67
has for description: Irish lineage

B.1.177.68 lineage
type: B.1.177.68
type: NamedIndividual
label: B.1.177.68
has for description: Irish lineage

B.1.177.69 lineage
type: B.1.177.69
type: NamedIndividual
label: B.1.177.69
has for description: UK lineage

B.1.177.70 lineage
type: B.1.177.70
type: NamedIndividual
label: B.1.177.70
has for description: Danish lineage

B.1.177.71 lineage
type: B.1.177.71
type: NamedIndividual
label: B.1.177.71
has for description: Swiss lineage

B.1.177.72 lineage
type: B.1.177.72
type: NamedIndividual
label: B.1.177.72
has for description: Portuguese lineage

B.1.177.73 lineage
type: B.1.177.73
type: NamedIndividual
label: B.1.177.73
has for description: Netherlands lineage

B.1.177.74 lineage
type: B.1.177.74
type: NamedIndividual
label: B.1.177.74
has for description: Netherlands, Spain, UK

B.1.177.75 lineage
type: B.1.177.75
type: NamedIndividual
label: B.1.177.75
has for description: Italian lineage

B.1.177.76 lineage
type: B.1.177.76
type: NamedIndividual
label: B.1.177.76
has for description: Danish

B.1.177.77 lineage
type: B.1.177.77
type: NamedIndividual
label: B.1.177.77
has for description: Benelux + Denmark

B.1.177.78 lineage
type: B.1.177.78
type: NamedIndividual
label: B.1.177.78
has for description: French lineage

B.1.177.80 lineage
type: B.1.177.80
type: NamedIndividual
label: B.1.177.80
has for description: Scandinavian lineage

B.1.177.81 lineage
type: B.1.177.81
type: NamedIndividual
label: B.1.177.81
has for description: Large European lineage

B.1.177.82 lineage
type: B.1.177.82
type: NamedIndividual
label: B.1.177.82
has for description: Scandinavian lineage

B.1.177.83 lineage
type: B.1.177.83
type: NamedIndividual
label: B.1.177.83
has for description: Italian lineage

B.1.177.84 lineage
type: B.1.177.84
type: NamedIndividual
label: B.1.177.84
has for description: UK lineage

B.1.177.85 lineage
type: B.1.177.85
type: NamedIndividual
label: B.1.177.85
has for description: Portuguese lineage

B.1.177.86 lineage
type: B.1.177.86
type: NamedIndividual
label: B.1.177.86
has for description: German and Danish lineage

B.1.177.87 lineage
type: B.1.177.87
type: NamedIndividual
label: B.1.177.87
has for description: UK lineage

B.1.177.88 lineage
type: B.1.177.88
type: NamedIndividual
label: B.1.177.88
has for description: Italian lineage from pango-designation issue #19

B.1.177.89 lineage
type: B.1.177.89
type: NamedIndividual
label: B.1.177.89
has for description: Switzerland lineage

B.1.178 lineage
type: B.1.178
type: NamedIndividual
label: B.1.178
has for description: DRC lineage

B.1.179 lineage
type: B.1.179
type: NamedIndividual
label: B.1.179
has for description: Denmark

B.1.180 lineage
type: B.1.180
type: NamedIndividual
label: B.1.180
has for description: Romanian lineage

B.1.181 lineage
type: B.1.181
type: NamedIndividual
label: B.1.181
has for description: USA lineage

B.1.182 lineage
type: B.1.182
type: NamedIndividual
label: B.1.182
has for description: Spanish lineage

B.1.184 lineage
type: B.1.184
type: NamedIndividual
label: B.1.184
has for description: India

B.1.187 lineage
type: B.1.187
type: NamedIndividual
label: B.1.187
has for description: Polish lineage

B.1.188 lineage
type: B.1.188
type: NamedIndividual
label: B.1.188
has for description: USA (OR) lineage

B.1.189 lineage
type: B.1.189
type: NamedIndividual
label: B.1.189
has for description: USA/Mexico

B.1.190 lineage
type: B.1.190
type: NamedIndividual
label: B.1.190
has for description: Netherlands lineage

B.1.192 lineage
type: B.1.192
type: NamedIndividual
label: B.1.192
has for description: Equatorial Guinea

B.1.194 lineage
type: B.1.194
type: NamedIndividual
label: B.1.194
has for description: USA

B.1.195 lineage
type: B.1.195
type: NamedIndividual
label: B.1.195
has for description: UAE

B.1.198 lineage
type: B.1.198
type: NamedIndividual
label: B.1.198
has for description: UK lineage

B.1.199 lineage
type: B.1.199
type: NamedIndividual
label: B.1.199
has for description: USA

B.1.201 lineage
type: B.1.201
type: NamedIndividual
label: B.1.201
has for description: UK lineage

B.1.203 lineage
type: B.1.203
type: NamedIndividual
label: B.1.203
has for description: Panama/Costa Rica

B.1.206 lineage
type: B.1.206
type: NamedIndividual
label: B.1.206
has for description: USA

B.1.205 lineage
type: B.1.205
type: NamedIndividual
label: B.1.205
has for description: Peruvian

B.1.208 lineage
type: B.1.208
type: NamedIndividual
label: B.1.208
has for description: French lineage

B.1.210 lineage
type: B.1.210
type: NamedIndividual
label: B.1.210
has for description: Indian lineage

B.1.211 lineage
type: B.1.211
type: NamedIndividual
label: B.1.211
has for description: Belgium/ Luxembourg lineage

B.1.212 lineage
type: B.1.212
type: NamedIndividual
label: B.1.212
has for description: South American lineage

B.1.213 lineage
type: B.1.213
type: NamedIndividual
label: B.1.213
has for description: Polish lineage

B.1.214 lineage
type: B.1.214
type: NamedIndividual
label: B.1.214
has for description: DRC/ Congo lineage

B.1.214.1 lineage
type: B.1.214.1
type: NamedIndividual
label: B.1.214.1
has for description: Congo/ France lineage

B.1.214.2 lineage
type: B.1.214.2
type: NamedIndividual
label: B.1.214.2
has for description: Lineage from Belgium with a number of key spike mutations and a 9bp spike insertion.

B.1.214.3 lineage
type: B.1.214.3
type: NamedIndividual
label: B.1.214.3
has for description: France, Belgium and Mayotte lineage.

B.1.214.4 lineage
type: B.1.214.4
type: NamedIndividual
label: B.1.214.4
has for description: Danish lineage.

B.1.215 lineage
type: B.1.215
type: NamedIndividual
label: B.1.215
has for description: Scottish lineage

B.1.218 lineage
type: B.1.218
type: NamedIndividual
label: B.1.218
has for description: Swiss lineage

B.1.219 lineage
type: B.1.219
type: NamedIndividual
label: B.1.219
has for description: Suriname lineage

B.1.220 lineage
type: B.1.220
type: NamedIndividual
label: B.1.220
has for description: European lineage

B.1.221 lineage
type: B.1.221
type: NamedIndividual
label: B.1.221
has for description: European lineage

B.1.221.1 lineage
type: B.1.221.1
type: NamedIndividual
label: B.1.221.1
has for description: UK lineage

B.1.221.2 lineage
type: B.1.221.2
type: NamedIndividual
label: B.1.221.2
has for description: German lineage

B.1.221.3 lineage
type: B.1.221.3
type: NamedIndividual
label: B.1.221.3
has for description: Danish lineage

B.1.221.4 lineage
type: B.1.221.4
type: NamedIndividual
label: B.1.221.4
has for description: Belgium/ Luxembourg lineage

B.1.222 lineage
type: B.1.222
type: NamedIndividual
label: B.1.222
has for description: Scottish lineage

B.1.223 lineage
type: B.1.223
type: NamedIndividual
label: B.1.223
has for description: UK lineage

B.1.224 lineage
type: B.1.224
type: NamedIndividual
label: B.1.224
has for description: Austrian lineage

B.1.225 lineage
type: B.1.225
type: NamedIndividual
label: B.1.225
has for description: UK lineage

B.1.227 lineage
type: B.1.227
type: NamedIndividual
label: B.1.227
has for description: Sweden

B.1.229 lineage
type: B.1.229
type: NamedIndividual
label: B.1.229
has for description: UK lineage

B.1.231 lineage
type: B.1.231
type: NamedIndividual
label: B.1.231
has for description: UK lineage

B.1.232 lineage
type: B.1.232
type: NamedIndividual
label: B.1.232
has for description: USA/ Scottish lineage

B.1.233 lineage
type: B.1.233
type: NamedIndividual
label: B.1.233
has for description: USA lineage

B.1.234 lineage
type: B.1.234
type: NamedIndividual
label: B.1.234
has for description: USA lineage

B.1.235 lineage
type: B.1.235
type: NamedIndividual
label: B.1.235
has for description: UK

B.1.236 lineage
type: B.1.236
type: NamedIndividual
label: B.1.236
has for description: Swiss lineage

B.1.237 lineage
type: B.1.237
type: NamedIndividual
label: B.1.237
has for description: South african lineage

B.1.238 lineage
type: B.1.238
type: NamedIndividual
label: B.1.238
has for description: UK lineage

B.1.239 lineage
type: B.1.239
type: NamedIndividual
label: B.1.239
has for description: USA lineage

B.1.240 lineage
type: B.1.240
type: NamedIndividual
label: B.1.240
has for description: USA

B.1.240.1 lineage
type: B.1.240.1
type: NamedIndividual
label: B.1.240.1
has for description: Curacao and Aruba

B.1.240.2 lineage
type: B.1.240.2
type: NamedIndividual
label: B.1.240.2
has for description: England

B.1.241 lineage
type: B.1.241
type: NamedIndividual
label: B.1.241
has for description: USA lineage

B.1.243 lineage
type: B.1.243
type: NamedIndividual
label: B.1.243
has for description: USA lineage

B.1.243.1 lineage
type: B.1.243.1
type: NamedIndividual
label: B.1.243.1
has for description: Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf.

B.1.243.2 lineage
type: B.1.243.2
type: NamedIndividual
label: B.1.243.2
has for description: Mexico lineage, from pango-designation issue #169

B.1.242 lineage
type: B.1.242
type: NamedIndividual
label: B.1.242
has for description: Norway lineage

B.1.245 lineage
type: B.1.245
type: NamedIndividual
label: B.1.245
has for description: USA/CA

B.1.247 lineage
type: B.1.247
type: NamedIndividual
label: B.1.247
has for description: India

B.1.249 lineage
type: B.1.249
type: NamedIndividual
label: B.1.249
has for description: England

B.1.248 lineage
type: B.1.248
type: NamedIndividual
label: B.1.248
has for description: Scotland

B.1.250 lineage
type: B.1.250
type: NamedIndividual
label: B.1.250
has for description: England

B.1.251 lineage
type: B.1.251
type: NamedIndividual
label: B.1.251
has for description: England

B.1.252 lineage
type: B.1.252
type: NamedIndividual
label: B.1.252
has for description: Wales

B.1.254 lineage
type: B.1.254
type: NamedIndividual
label: B.1.254
has for description: Scotland

B.1.256 lineage
type: B.1.256
type: NamedIndividual
label: B.1.256
has for description: Scottish lineage

B.1.258 lineage
type: B.1.258
type: NamedIndividual
label: B.1.258
has for description: UK lineage

B.1.258.2 lineage
type: B.1.258.2
type: NamedIndividual
label: B.1.258.2
has for description: Irish lineage (has sub-lineage G.1)

G.1 lineage
type: G.1
type: NamedIndividual
label: G.1
has for description: Alias of B.1.258.2.1, UK lineage
has for alias: B.1.258.2.1

B.1.258.3 lineage
type: B.1.258.3
type: NamedIndividual
label: B.1.258.3
has for description: UK lineage

B.1.258.4 lineage
type: B.1.258.4
type: NamedIndividual
label: B.1.258.4
has for description: UK lineage

B.1.258.5 lineage
type: B.1.258.5
type: NamedIndividual
label: B.1.258.5
has for description: UK lineage

B.1.258.6 lineage
type: B.1.258.6
type: NamedIndividual
label: B.1.258.6
has for description: UK lineage

B.1.258.7 lineage
type: B.1.258.7
type: NamedIndividual
label: B.1.258.7
has for description: UK lineage

B.1.258.9 lineage
type: B.1.258.9
type: NamedIndividual
label: B.1.258.9
has for description: Danish lineage

B.1.258.10 lineage
type: B.1.258.10
type: NamedIndividual
label: B.1.258.10
has for description: Scottish lineage

B.1.258.11 lineage
type: B.1.258.11
type: NamedIndividual
label: B.1.258.11
has for description: Danish lineage

B.1.258.12 lineage
type: B.1.258.12
type: NamedIndividual
label: B.1.258.12
has for description: UK lineage

B.1.258.14 lineage
type: B.1.258.14
type: NamedIndividual
label: B.1.258.14
has for description: Italian lineage

B.1.258.15 lineage
type: B.1.258.15
type: NamedIndividual
label: B.1.258.15
has for description: Danish lineage

B.1.258.16 lineage
type: B.1.258.16
type: NamedIndividual
label: B.1.258.16
has for description: Swiss/ Danish lineage

B.1.258.17 lineage
type: B.1.258.17
type: NamedIndividual
label: B.1.258.17
has for description: European lineage

B.1.258.18 lineage
type: B.1.258.18
type: NamedIndividual
label: B.1.258.18
has for description: Netherlands lineage

B.1.258.19 lineage
type: B.1.258.19
type: NamedIndividual
label: B.1.258.19
has for description: Danish lineage

B.1.258.20 lineage
type: B.1.258.20
type: NamedIndividual
label: B.1.258.20
has for description: Luxembourg lineage

B.1.258.21 lineage
type: B.1.258.21
type: NamedIndividual
label: B.1.258.21
has for description: Netherlands lineage

B.1.258.22 lineage
type: B.1.258.22
type: NamedIndividual
label: B.1.258.22
has for description: Swedish lineage

B.1.258.23 lineage
type: B.1.258.23
type: NamedIndividual
label: B.1.258.23
has for description: USA (UT) lineage

B.1.258.24 lineage
type: B.1.258.24
type: NamedIndividual
label: B.1.258.24
has for description: Italian lineage

B.1.260 lineage
type: B.1.260
type: NamedIndividual
label: B.1.260
has for description: Saudi Arabian lineage

B.1.263 lineage
type: B.1.263
type: NamedIndividual
label: B.1.263
has for description: Danish

B.1.264 lineage
type: B.1.264
type: NamedIndividual
label: B.1.264
has for description: USA (UT)

B.1.264.1 lineage
type: B.1.264.1
type: NamedIndividual
label: B.1.264.1
has for description: Russia, Germany, Switzerland, Austria. Was B.1.412

B.1.265 lineage
type: B.1.265
type: NamedIndividual
label: B.1.265
has for description: USA lineage

B.1.267 lineage
type: B.1.267
type: NamedIndividual
label: B.1.267
has for description: USA (CA)

B.1.268 lineage
type: B.1.268
type: NamedIndividual
label: B.1.268
has for description: USA

B.1.270 lineage
type: B.1.270
type: NamedIndividual
label: B.1.270
has for description: Canadian lineage

B.1.273 lineage
type: B.1.273
type: NamedIndividual
label: B.1.273
has for description: French lineage

B.1.274 lineage
type: B.1.274
type: NamedIndividual
label: B.1.274
has for description: Utah lineage

B.1.276 lineage
type: B.1.276
type: NamedIndividual
label: B.1.276
has for description: USA lineage

B.1.277 lineage
type: B.1.277
type: NamedIndividual
label: B.1.277
has for description: European lineage

B.1.279 lineage
type: B.1.279
type: NamedIndividual
label: B.1.279
has for description: Canadian lineage

B.1.280 lineage
type: B.1.280
type: NamedIndividual
label: B.1.280
has for description: USA

B.1.281 lineage
type: B.1.281
type: NamedIndividual
label: B.1.281
has for description: Bahrain lineage

B.1.282 lineage
type: B.1.282
type: NamedIndividual
label: B.1.282
has for description: UK lineage

B.1.284 lineage
type: B.1.284
type: NamedIndividual
label: B.1.284
has for description: USA - Texas

B.1.285 lineage
type: B.1.285
type: NamedIndividual
label: B.1.285
has for description: USA - Texas

B.1.287 lineage
type: B.1.287
type: NamedIndividual
label: B.1.287
has for description: USA lineage

B.1.289 lineage
type: B.1.289
type: NamedIndividual
label: B.1.289
has for description: USA - Arizona

B.1.291 lineage
type: B.1.291
type: NamedIndividual
label: B.1.291
has for description: Costa Rica

B.1.292 lineage
type: B.1.292
type: NamedIndividual
label: B.1.292
has for description: Gambia

B.1.293 lineage
type: B.1.293
type: NamedIndividual
label: B.1.293
has for description: USA

B.1.294 lineage
type: B.1.294
type: NamedIndividual
label: B.1.294
has for description: USA - WI and MN

B.1.298 lineage
type: B.1.298
type: NamedIndividual
label: B.1.298
has for description: USA (north east)

B.1.301 lineage
type: B.1.301
type: NamedIndividual
label: B.1.301
has for description: USA , some B.1.2 merged in

B.1.302 lineage
type: B.1.302
type: NamedIndividual
label: B.1.302
has for description: USA, New England

B.1.304 lineage
type: B.1.304
type: NamedIndividual
label: B.1.304
has for description: USA

B.1.305 lineage
type: B.1.305
type: NamedIndividual
label: B.1.305
has for description: USA, mostly TX

B.1.306 lineage
type: B.1.306
type: NamedIndividual
label: B.1.306
has for description: USA lineage

B.1.308 lineage
type: B.1.308
type: NamedIndividual
label: B.1.308
has for description: Northern USA and Canada

B.1.309 lineage
type: B.1.309
type: NamedIndividual
label: B.1.309
has for description: USA lineage

B.1.310 lineage
type: B.1.310
type: NamedIndividual
label: B.1.310
has for description: Netherlands

B.1.311 lineage
type: B.1.311
type: NamedIndividual
label: B.1.311
has for description: USA lineage

B.1.313 lineage
type: B.1.313
type: NamedIndividual
label: B.1.313
has for description: USA (removed the polytomy at the base of the lineage)

B.1.314 lineage
type: B.1.314
type: NamedIndividual
label: B.1.314
has for description: North American lineage

B.1.315 lineage
type: B.1.315
type: NamedIndividual
label: B.1.315
has for description: USA lineage

B.1.316 lineage
type: B.1.316
type: NamedIndividual
label: B.1.316
has for description: Canada lineage

B.1.318 lineage
type: B.1.318
type: NamedIndividual
label: B.1.318
has for description: USA (FL)

B.1.319 lineage
type: B.1.319
type: NamedIndividual
label: B.1.319
has for description: USA and Australia

B.1.320 lineage
type: B.1.320
type: NamedIndividual
label: B.1.320
has for description: USA

B.1.321 lineage
type: B.1.321
type: NamedIndividual
label: B.1.321
has for description: Belgium, England

B.1.323 lineage
type: B.1.323
type: NamedIndividual
label: B.1.323
has for description: USA (NY)

B.1.324 lineage
type: B.1.324
type: NamedIndividual
label: B.1.324
has for description: USA

B.1.325 lineage
type: B.1.325
type: NamedIndividual
label: B.1.325
has for description: USA (TX)

B.1.326 lineage
type: B.1.326
type: NamedIndividual
label: B.1.326
has for description: USA (TX)

B.1.328 lineage
type: B.1.328
type: NamedIndividual
label: B.1.328
has for description: USA

B.1.329 lineage
type: B.1.329
type: NamedIndividual
label: B.1.329
has for description: German

B.1.330 lineage
type: B.1.330
type: NamedIndividual
label: B.1.330
has for description: USA (MN)

B.1.332 lineage
type: B.1.332
type: NamedIndividual
label: B.1.332
has for description: USA

B.1.333 lineage
type: B.1.333
type: NamedIndividual
label: B.1.333
has for description: USA lineage WA

B.1.334 lineage
type: B.1.334
type: NamedIndividual
label: B.1.334
has for description: USA lineage

B.1.335 lineage
type: B.1.335
type: NamedIndividual
label: B.1.335
has for description: USA lineage

B.1.336 lineage
type: B.1.336
type: NamedIndividual
label: B.1.336
has for description: USA lineage

B.1.337 lineage
type: B.1.337
type: NamedIndividual
label: B.1.337
has for description: USA lineage

B.1.338 lineage
type: B.1.338
type: NamedIndividual
label: B.1.338
has for description: Australia

B.1.340 lineage
type: B.1.340
type: NamedIndividual
label: B.1.340
has for description: USA lineage

B.1.341 lineage
type: B.1.341
type: NamedIndividual
label: B.1.341
has for description: USA lineage

B.1.342 lineage
type: B.1.342
type: NamedIndividual
label: B.1.342
has for description: Sweden

B.1.344 lineage
type: B.1.344
type: NamedIndividual
label: B.1.344
has for description: USA (CO)

B.1.346 lineage
type: B.1.346
type: NamedIndividual
label: B.1.346
has for description: USA lineage

B.1.348 lineage
type: B.1.348
type: NamedIndividual
label: B.1.348
has for description: USA lineage

B.1.349 lineage
type: B.1.349
type: NamedIndividual
label: B.1.349
has for description: USA lineage

B.1.350 lineage
type: B.1.350
type: NamedIndividual
label: B.1.350
has for description: Canada

B.1.350.1 lineage
type: B.1.350.1
type: NamedIndividual
label: B.1.350.1
has for description: England

B.1.351 lineage
type: B.1.351
type: NamedIndividual
label: B.1.351
has for description: Lineage of concern detected in South Africa

t205i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.351 lineage
has for lineage: B.1.429 lineage
mutation name: t205i

k3353r
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.351 lineage
mutation name: k3353r

d80a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.351 lineage
mutation name: d80a

p71l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: B.1.351 lineage
mutation name: p71l

q57h
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.351 lineage
has for lineage: B.1.429 lineage
has for lineage: B.1.616 lineage
mutation name: q57h

a701v
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.351 lineage
mutation name: a701v

k1655n
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.351 lineage
mutation name: k1655n

del241/243
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.351 lineage
mutation name: del241/243

B.1.351.1 lineage
type: B.1.351.1
type: NamedIndividual
label: B.1.351.1
has for description: Sublineage of B.1.351 circulating in Botswana

B.1.351.2 lineage
type: B.1.351.2
type: NamedIndividual
label: B.1.351.2
has for description: Sublineage of B.1.351 circulating in Mayotte

B.1.351.3 lineage
type: B.1.351.3
type: NamedIndividual
label: B.1.351.3
has for description: Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere

B.1.351.5 lineage
type: B.1.351.5
type: NamedIndividual
label: B.1.351.5
has for description: Sublineage of B.1.351 in Spain, from pango-designation issue #211

B.1.343 lineage
type: B.1.343
type: NamedIndividual
label: B.1.343
has for description: Denmark

B.1.354 lineage
type: B.1.354
type: NamedIndividual
label: B.1.354
has for description: Denmark

B.1.355 lineage
type: B.1.355
type: NamedIndividual
label: B.1.355
has for description: USA lineage

B.1.356 lineage
type: B.1.356
type: NamedIndividual
label: B.1.356
has for description: European, mostly dutch and spanish, some north american

B.1.357 lineage
type: B.1.357
type: NamedIndividual
label: B.1.357
has for description: USA (OR,WA,HI)

B.1.358 lineage
type: B.1.358
type: NamedIndividual
label: B.1.358
has for description: Danish lineage

B.1.359 lineage
type: B.1.359
type: NamedIndividual
label: B.1.359
has for description: USA lineage

B.1.360 lineage
type: B.1.360
type: NamedIndividual
label: B.1.360
has for description: USA

B.1.361 lineage
type: B.1.361
type: NamedIndividual
label: B.1.361
has for description: USA lineage (split from whatever Chris reassigns B.1.361 to)

B.1.362 lineage
type: B.1.362
type: NamedIndividual
label: B.1.362
has for description: Israel lineage

B.1.362.1 lineage
type: B.1.362.1
type: NamedIndividual
label: B.1.362.1
has for description: UK lineage

B.1.362.2 lineage
type: B.1.362.2
type: NamedIndividual
label: B.1.362.2
has for description: UK lineage

B.1.363 lineage
type: B.1.363
type: NamedIndividual
label: B.1.363
has for description: USA lineage

B.1.366 lineage
type: B.1.366
type: NamedIndividual
label: B.1.366
has for description: USA lineage

B.1.367 lineage
type: B.1.367
type: NamedIndividual
label: B.1.367
has for description: European lineage (mostly France and England)

B.1.369 lineage
type: B.1.369
type: NamedIndividual
label: B.1.369
has for description: USA/ New Zealand lineage

B.1.369.1 lineage
type: B.1.369.1
type: NamedIndividual
label: B.1.369.1
has for description: Canada lineage

B.1.370 lineage
type: B.1.370
type: NamedIndividual
label: B.1.370
has for description: USA lineage, cleaned up a lot in release 2021-01-20

B.1.371 lineage
type: B.1.371
type: NamedIndividual
label: B.1.371
has for description: Danish/ USA lineage, previously part of B.1.21

B.1.372 lineage
type: B.1.372
type: NamedIndividual
label: B.1.372
has for description: Danish lineage

B.1.375 lineage
type: B.1.375
type: NamedIndividual
label: B.1.375
has for description: USA lineage (circulating in Connecticut with the 69-70del, which leads to SGTF. However, they express 484E and 501N in their spike proteins.)

B.1.377 lineage
type: B.1.377
type: NamedIndividual
label: B.1.377
has for description: USA and England

B.1.378 lineage
type: B.1.378
type: NamedIndividual
label: B.1.378
has for description: USA

B.1.379 lineage
type: B.1.379
type: NamedIndividual
label: B.1.379
has for description: UK

B.1.380 lineage
type: B.1.380
type: NamedIndividual
label: B.1.380
has for description: Rwanda / Uganda

B.1.381 lineage
type: B.1.381
type: NamedIndividual
label: B.1.381
has for description: South Africa

B.1.382 lineage
type: B.1.382
type: NamedIndividual
label: B.1.382
has for description: USA

B.1.383 lineage
type: B.1.383
type: NamedIndividual
label: B.1.383
has for description: Wales

B.1.384 lineage
type: B.1.384
type: NamedIndividual
label: B.1.384
has for description: USA lineage

B.1.385 lineage
type: B.1.385
type: NamedIndividual
label: B.1.385
has for description: USA

B.1.387 lineage
type: B.1.387
type: NamedIndividual
label: B.1.387
has for description: French lineage

B.1.388 lineage
type: B.1.388
type: NamedIndividual
label: B.1.388
has for description: Cote d'Ivoire lineage

B.1.389 lineage
type: B.1.389
type: NamedIndividual
label: B.1.389
has for description: England + Europe

B.1.390 lineage
type: B.1.390
type: NamedIndividual
label: B.1.390
has for description: USA

B.1.391 lineage
type: B.1.391
type: NamedIndividual
label: B.1.391
has for description: UK

B.1.393 lineage
type: B.1.393
type: NamedIndividual
label: B.1.393
has for description: Uganda

B.1.395 lineage
type: B.1.395
type: NamedIndividual
label: B.1.395
has for description: Wales

B.1.396 lineage
type: B.1.396
type: NamedIndividual
label: B.1.396
has for description: USA lineage

B.1.397 lineage
type: B.1.397
type: NamedIndividual
label: B.1.397
has for description: USA lineage

B.1.398 lineage
type: B.1.398
type: NamedIndividual
label: B.1.398
has for description: European lineage

B.1.399 lineage
type: B.1.399
type: NamedIndividual
label: B.1.399
has for description: USA

B.1.400 lineage
type: B.1.400
type: NamedIndividual
label: B.1.400
has for description: USA lineage

B.1.400.1 lineage
type: B.1.400.1
type: NamedIndividual
label: B.1.400.1
has for description: USA lineage, from pango-designation issue #94

B.1.401 lineage
type: B.1.401
type: NamedIndividual
label: B.1.401
has for description: USA lineage

B.1.402 lineage
type: B.1.402
type: NamedIndividual
label: B.1.402
has for description: USA lineage

B.1.403 lineage
type: B.1.403
type: NamedIndividual
label: B.1.403
has for description: USA lineage

B.1.404 lineage
type: B.1.404
type: NamedIndividual
label: B.1.404
has for description: USA lineage

B.1.405 lineage
type: B.1.405
type: NamedIndividual
label: B.1.405
has for description: USA lineage

B.1.406 lineage
type: B.1.406
type: NamedIndividual
label: B.1.406
has for description: Germany/ UK lineage

B.1.407 lineage
type: B.1.407
type: NamedIndividual
label: B.1.407
has for description: UK lineage

B.1.408 lineage
type: B.1.408
type: NamedIndividual
label: B.1.408
has for description: UK/ Romanian lineage

B.1.409 lineage
type: B.1.409
type: NamedIndividual
label: B.1.409
has for description: USA lineage

B.1.411 lineage
type: B.1.411
type: NamedIndividual
label: B.1.411
has for description: Sri Lankan lineage

B.1.413 lineage
type: B.1.413
type: NamedIndividual
label: B.1.413
has for description: USA

B.1.415 lineage
type: B.1.415
type: NamedIndividual
label: B.1.415
has for description: USA

B.1.415.1 lineage
type: B.1.415.1
type: NamedIndividual
label: B.1.415.1
has for description: Predominantly Mexico lineage, from pango-designation issue #157

B.1.416 lineage
type: B.1.416
type: NamedIndividual
label: B.1.416
has for description: Senegal/ Gambian lineage, reassigned from B.1.5.12

B.1.416.1 lineage
type: B.1.416.1
type: NamedIndividual
label: B.1.416.1
has for description: European lineage within diversity of B.1.416. Previously assigned E.1

B.1.417 lineage
type: B.1.417
type: NamedIndividual
label: B.1.417
has for description: South African lineage

B.1.418 lineage
type: B.1.418
type: NamedIndividual
label: B.1.418
has for description: Scottish lineage

B.1.420 lineage
type: B.1.420
type: NamedIndividual
label: B.1.420
has for description: Colombian lineage

B.1.421 lineage
type: B.1.421
type: NamedIndividual
label: B.1.421
has for description: USA lineage

B.1.422 lineage
type: B.1.422
type: NamedIndividual
label: B.1.422
has for description: Canada mostly

B.1.423 lineage
type: B.1.423
type: NamedIndividual
label: B.1.423
has for description: USA lineage

B.1.424 lineage
type: B.1.424
type: NamedIndividual
label: B.1.424
has for description: USA lineage

B.1.425 lineage
type: B.1.425
type: NamedIndividual
label: B.1.425
has for description: USA lineage

B.1.426 lineage
type: B.1.426
type: NamedIndividual
label: B.1.426
has for description: USA (UT) lineage

B.1.427 lineage
type: B.1.427
type: NamedIndividual
label: B.1.427
has for description: USA lineage (CA)

B.1.428 lineage
type: B.1.428
type: NamedIndividual
label: B.1.428
has for description: Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262)

B.1.428.1 lineage
type: B.1.428.1
type: NamedIndividual
label: B.1.428.1
has for description: Iraq

B.1.428.2 lineage
type: B.1.428.2
type: NamedIndividual
label: B.1.428.2
has for description: Tunisia, England, France

B.1.428.3 lineage
type: B.1.428.3
type: NamedIndividual
label: B.1.428.3
has for description: UAE, Jordan

B.1.429 lineage
type: B.1.429
type: NamedIndividual
label: B.1.429
has for description: A lineage predominantly circulating in California but with exports to other countries. Characterised by the spike L452R mutation but also has spike:W152C orf1ab:D5584Y and N:T205I.

i4205v
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.429 lineage
mutation name: i4205v

w152c
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.429 lineage
mutation name: w152c

s13i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.429 lineage
mutation name: s13i

B.1.429.1 lineage
type: B.1.429.1
type: NamedIndividual
label: B.1.429.1
has for description: Colorado lineage from pango-designation issue #37

B.1.431 lineage
type: B.1.431
type: NamedIndividual
label: B.1.431
has for description: Scotland

B.1.432 lineage
type: B.1.432
type: NamedIndividual
label: B.1.432
has for description: USA lineage

B.1.433 lineage
type: B.1.433
type: NamedIndividual
label: B.1.433
has for description: USA lineage

B.1.434 lineage
type: B.1.434
type: NamedIndividual
label: B.1.434
has for description: Australian lineage (previously a couple part of B.1.25, B.1.295)

B.1.435 lineage
type: B.1.435
type: NamedIndividual
label: B.1.435
has for description: USA - UT

B.1.436 lineage
type: B.1.436
type: NamedIndividual
label: B.1.436
has for description: USA lineage reassigned from previous tree

B.1.437 lineage
type: B.1.437
type: NamedIndividual
label: B.1.437
has for description: USA - FL

B.1.438 lineage
type: B.1.438
type: NamedIndividual
label: B.1.438
has for description: Lineage circulating in multiple countries

B.1.438.1 lineage
type: B.1.438.1
type: NamedIndividual
label: B.1.438.1
has for description: Canada lineage

B.1.438.2 lineage
type: B.1.438.2
type: NamedIndividual
label: B.1.438.2
has for description: Mayotte and Reunion lineage

B.1.438.3 lineage
type: B.1.438.3
type: NamedIndividual
label: B.1.438.3
has for description: USA lineage

B.1.438.4 lineage
type: B.1.438.4
type: NamedIndividual
label: B.1.438.4
has for description: USA lineage

B.1.439 lineage
type: B.1.439
type: NamedIndividual
label: B.1.439
has for description: USA

B.1.441 lineage
type: B.1.441
type: NamedIndividual
label: B.1.441
has for description: Global lineage (inc. merge of B.1.274)

B.1.442 lineage
type: B.1.442
type: NamedIndividual
label: B.1.442
has for description: USA

B.1.443 lineage
type: B.1.443
type: NamedIndividual
label: B.1.443
has for description: USA lineage

B.1.444 lineage
type: B.1.444
type: NamedIndividual
label: B.1.444
has for description: USA Utah lineage

B.1.445 lineage
type: B.1.445
type: NamedIndividual
label: B.1.445
has for description: USA (AZ)

B.1.446 lineage
type: B.1.446
type: NamedIndividual
label: B.1.446
has for description: USA, some B.1.333

B.1.448 lineage
type: B.1.448
type: NamedIndividual
label: B.1.448
has for description: USA lineage

B.1.450 lineage
type: B.1.450
type: NamedIndividual
label: B.1.450
has for description: USA (TX)

B.1.451 lineage
type: B.1.451
type: NamedIndividual
label: B.1.451
has for description: USA lineage (VA), previously B.1.328 and B.1.317

B.1.452 lineage
type: B.1.452
type: NamedIndividual
label: B.1.452
has for description: USA (CA)

B.1.453 lineage
type: B.1.453
type: NamedIndividual
label: B.1.453
has for description: USA (CA and TX)

B.1.456 lineage
type: B.1.456
type: NamedIndividual
label: B.1.456
has for description: SE Asian (reassigned)

B.1.458 lineage
type: B.1.458
type: NamedIndividual
label: B.1.458
has for description: India

B.1.459 lineage
type: B.1.459
type: NamedIndividual
label: B.1.459
has for description: Indonesia

B.1.460 lineage
type: B.1.460
type: NamedIndividual
label: B.1.460
has for description: UK lineage

B.1.462 lineage
type: B.1.462
type: NamedIndividual
label: B.1.462
has for description: UK/Nigeria

B.1.463 lineage
type: B.1.463
type: NamedIndividual
label: B.1.463
has for description: Finland

B.1.465 lineage
type: B.1.465
type: NamedIndividual
label: B.1.465
has for description: UK, contains B.1.466 which is reassigned (see below)

B.1.466 lineage
type: B.1.466
type: NamedIndividual
label: B.1.466
has for description: Global lineage containing two new sublineages (see below)

B.1.466.1 lineage
type: B.1.466.1
type: NamedIndividual
label: B.1.466.1
has for description: USA/UAE

B.1.466.2 lineage
type: B.1.466.2
type: NamedIndividual
label: B.1.466.2
has for description: Indonesia

AU.1 lineage
type: AU.1
type: NamedIndividual
label: AU.1
has for description: Alias of B.1.466.2.1, predominantly Papua New Guinea with some Australia sequences
has for alias: B.1.466.2.1

AU.2 lineage
type: AU.2
type: NamedIndividual
label: AU.2
has for description: Alias of B.1.466.2.2, Malaysia lineage
has for alias: B.1.466.2.2

AU.3 lineage
type: AU.3
type: NamedIndividual
label: AU.3
has for description: Alias of B.1.466.2.3, predominantly Australia with some Papua New Guinea and Singapore sequences
has for alias: B.1.466.2.3

B.1.467 lineage
type: B.1.467
type: NamedIndividual
label: B.1.467
has for description: Nigeria/Switzerland

B.1.468 lineage
type: B.1.468
type: NamedIndividual
label: B.1.468
has for description: Indonesia/Singapore. Seq names misassigned in original file

B.1.469 lineage
type: B.1.469
type: NamedIndividual
label: B.1.469
has for description: European (Turkey, Denmark, UK)

B.1.470 lineage
type: B.1.470
type: NamedIndividual
label: B.1.470
has for description: Indonesia/Singapore

B.1.471 lineage
type: B.1.471
type: NamedIndividual
label: B.1.471
has for description: UK with global representation

B.1.473 lineage
type: B.1.473
type: NamedIndividual
label: B.1.473
has for description: USA lineage

B.1.474 lineage
type: B.1.474
type: NamedIndividual
label: B.1.474
has for description: Denmark/ Luxembourg lineage

B.1.475 lineage
type: B.1.475
type: NamedIndividual
label: B.1.475
has for description: German lineage

B.1.476 lineage
type: B.1.476
type: NamedIndividual
label: B.1.476
has for description: West African lineage

B.1.478 lineage
type: B.1.478
type: NamedIndividual
label: B.1.478
has for description: USA lineage

B.1.479 lineage
type: B.1.479
type: NamedIndividual
label: B.1.479
has for description: USA lineage

B.1.480 lineage
type: B.1.480
type: NamedIndividual
label: B.1.480
has for description: England, Australia, Sweden, Norway

B.1.482 lineage
type: B.1.482
type: NamedIndividual
label: B.1.482
has for description: France/ West African lineage

B.1.483 lineage
type: B.1.483
type: NamedIndividual
label: B.1.483
has for description: USA lineage

B.1.485 lineage
type: B.1.485
type: NamedIndividual
label: B.1.485
has for description: USA lineage

B.1.486 lineage
type: B.1.486
type: NamedIndividual
label: B.1.486
has for description: USA (MA)

B.1.487 lineage
type: B.1.487
type: NamedIndividual
label: B.1.487
has for description: USA - TX

B.1.488 lineage
type: B.1.488
type: NamedIndividual
label: B.1.488
has for description: Denmark and Sweden

B.1.489 lineage
type: B.1.489
type: NamedIndividual
label: B.1.489
has for description: Wales and Norway

B.1.490 lineage
type: B.1.490
type: NamedIndividual
label: B.1.490
has for description: Finland.

B.1.491 lineage
type: B.1.491
type: NamedIndividual
label: B.1.491
has for description: England

B.1.492 lineage
type: B.1.492
type: NamedIndividual
label: B.1.492
has for description: USA - Colorado

B.1.493 lineage
type: B.1.493
type: NamedIndividual
label: B.1.493
has for description: USA (FL)

B.1.494 lineage
type: B.1.494
type: NamedIndividual
label: B.1.494
has for description: USA (Split from B.1.3)

B.1.495 lineage
type: B.1.495
type: NamedIndividual
label: B.1.495
has for description: USA (Split from B.1.3)

B.1.496 lineage
type: B.1.496
type: NamedIndividual
label: B.1.496
has for description: USA (could be dissolved - sequences jumped out, previously split from B.1.3)

B.1.497 lineage
type: B.1.497
type: NamedIndividual
label: B.1.497
has for description: South Korea (was B.1.3.1)

B.1.498 lineage
type: B.1.498
type: NamedIndividual
label: B.1.498
has for description: USA (Split from B.1.3)

B.1.499 lineage
type: B.1.499
type: NamedIndividual
label: B.1.499
has for description: Mostly Argentina, some Spain, NL, Hong Kong (was B.1.3.2)

B.1.499.1 lineage
type: B.1.499.1
type: NamedIndividual
label: B.1.499.1
has for description: USA lineage

B.1.500 lineage
type: B.1.500
type: NamedIndividual
label: B.1.500
has for description: USA (split from B.1.3)

B.1.501 lineage
type: B.1.501
type: NamedIndividual
label: B.1.501
has for description: USA (Split from B.1.3)

B.1.502 lineage
type: B.1.502
type: NamedIndividual
label: B.1.502
has for description: USA (Split from B.1.3)

B.1.503 lineage
type: B.1.503
type: NamedIndividual
label: B.1.503
has for description: USA (Split from B.1.3)

B.1.504 lineage
type: B.1.504
type: NamedIndividual
label: B.1.504
has for description: Israel and England (was B.1.3.3)

B.1.505 lineage
type: B.1.505
type: NamedIndividual
label: B.1.505
has for description: Israel and england (was B.1.3.4)

B.1.506 lineage
type: B.1.506
type: NamedIndividual
label: B.1.506
has for description: USA (NY, split from B.1.3)

B.1.507 lineage
type: B.1.507
type: NamedIndividual
label: B.1.507
has for description: USA (MI, NY, split from B.1.3)

B.1.508 lineage
type: B.1.508
type: NamedIndividual
label: B.1.508
has for description: USA (NY, AZ, split from B.1.3)

B.1.509 lineage
type: B.1.509
type: NamedIndividual
label: B.1.509
has for description: USA (split from B.1.3, mostly FL)

B.1.510 lineage
type: B.1.510
type: NamedIndividual
label: B.1.510
has for description: Iceland, Sweden, North America (could be dissolved)

B.1.511 lineage
type: B.1.511
type: NamedIndividual
label: B.1.511
has for description: USA lineage

B.1.513 lineage
type: B.1.513
type: NamedIndividual
label: B.1.513
has for description: Northern Europe

B.1.515 lineage
type: B.1.515
type: NamedIndividual
label: B.1.515
has for description: USA (Utah)

B.1.516 lineage
type: B.1.516
type: NamedIndividual
label: B.1.516
has for description: USA (AZ and NM)

B.1.517 lineage
type: B.1.517
type: NamedIndividual
label: B.1.517
has for description: USA (mostly AZ)

B.1.517.1 lineage
type: B.1.517.1
type: NamedIndividual
label: B.1.517.1
has for description: Australia

B.1.518 lineage
type: B.1.518
type: NamedIndividual
label: B.1.518
has for description: USA

B.1.520 lineage
type: B.1.520
type: NamedIndividual
label: B.1.520
has for description: USA, Canada, England, Germany etc. (could be dissolved / reassigned to B.1)

B.1.521 lineage
type: B.1.521
type: NamedIndividual
label: B.1.521
has for description: USA lineage

B.1.523 lineage
type: B.1.523
type: NamedIndividual
label: B.1.523
has for description: UK/Australia

B.1.524 lineage
type: B.1.524
type: NamedIndividual
label: B.1.524
has for description: Malaysian lineage

B.1.525 lineage
type: B.1.525
type: NamedIndividual
label: B.1.525
has for description: International lineage with E484K, del69-70 among other defining mutations.

B.1.526 lineage
type: B.1.526
type: NamedIndividual
label: B.1.526
has for description: A lineage predominantly circulating in New York but with a few exports to other countries. Characterised by spike mutations T95I and D253G, plus others. The most frequent spike mutation pattern is L5F T95I D253G E484K D614G A701V, with a smaller fraction having S477N instead of E484K. Spike mutation E484K is present in about half of this lineage (as of 2021-02-10) - Very possible not all new additions carry T95I and D253G (someone should check this, e.g. for USA/NY-Wadsworth-21008455-01/2021 and Aruba/AW-RIVM-11403/2021)

B.1.527 lineage
type: B.1.527
type: NamedIndividual
label: B.1.527
has for description: Czech Republic/ Ukraine lineage

B.1.528 lineage
type: B.1.528
type: NamedIndividual
label: B.1.528
has for description: Moroccan lineage

B.1.529 lineage
type: B.1.529
type: NamedIndividual
label: B.1.529
has for description: French lineage

B.1.530 lineage
type: B.1.530
type: NamedIndividual
label: B.1.530
has for description: Kenya

B.1.531 lineage
type: B.1.531
type: NamedIndividual
label: B.1.531
has for description: England

B.1.532 lineage
type: B.1.532
type: NamedIndividual
label: B.1.532
has for description: England

B.1.533 lineage
type: B.1.533
type: NamedIndividual
label: B.1.533
has for description: Saudi Arabia

B.1.534 lineage
type: B.1.534
type: NamedIndividual
label: B.1.534
has for description: Denmark

B.1.535 lineage
type: B.1.535
type: NamedIndividual
label: B.1.535
has for description: Australia

B.1.536 lineage
type: B.1.536
type: NamedIndividual
label: B.1.536
has for description: Denmark

B.1.537 lineage
type: B.1.537
type: NamedIndividual
label: B.1.537
has for description: India

B.1.538 lineage
type: B.1.538
type: NamedIndividual
label: B.1.538
has for description: India

B.1.539 lineage
type: B.1.539
type: NamedIndividual
label: B.1.539
has for description: USA

B.1.540 lineage
type: B.1.540
type: NamedIndividual
label: B.1.540
has for description: India

B.1.541 lineage
type: B.1.541
type: NamedIndividual
label: B.1.541
has for description: USA lineage

B.1.542 lineage
type: B.1.542
type: NamedIndividual
label: B.1.542
has for description: Spain

B.1.543 lineage
type: B.1.543
type: NamedIndividual
label: B.1.543
has for description: USA

B.1.544 lineage
type: B.1.544
type: NamedIndividual
label: B.1.544
has for description: Congo/ Cameroon/ USA lineage

B.1.545 lineage
type: B.1.545
type: NamedIndividual
label: B.1.545
has for description: New Zealand

B.1.546 lineage
type: B.1.546
type: NamedIndividual
label: B.1.546
has for description: USA

B.1.547 lineage
type: B.1.547
type: NamedIndividual
label: B.1.547
has for description: Canada

B.1.548 lineage
type: B.1.548
type: NamedIndividual
label: B.1.548
has for description: India

B.1.549 lineage
type: B.1.549
type: NamedIndividual
label: B.1.549
has for description: Kenya + England

B.1.550 lineage
type: B.1.550
type: NamedIndividual
label: B.1.550
has for description: USA lineage

B.1.551 lineage
type: B.1.551
type: NamedIndividual
label: B.1.551
has for description: USA lineage

B.1.552 lineage
type: B.1.552
type: NamedIndividual
label: B.1.552
has for description: North American

B.1.554 lineage
type: B.1.554
type: NamedIndividual
label: B.1.554
has for description: USA (UT) lineage

B.1.555 lineage
type: B.1.555
type: NamedIndividual
label: B.1.555
has for description: Sweden

B.1.556 lineage
type: B.1.556
type: NamedIndividual
label: B.1.556
has for description: USA lineage

B.1.557 lineage
type: B.1.557
type: NamedIndividual
label: B.1.557
has for description: Northern Ireland

B.1.558 lineage
type: B.1.558
type: NamedIndividual
label: B.1.558
has for description: USA/ Mexico lineage

B.1.559 lineage
type: B.1.559
type: NamedIndividual
label: B.1.559
has for description: Scotland

B.1.560 lineage
type: B.1.560
type: NamedIndividual
label: B.1.560
has for description: India

B.1.561 lineage
type: B.1.561
type: NamedIndividual
label: B.1.561
has for description: USA - contains previous B.1.404

B.1.562 lineage
type: B.1.562
type: NamedIndividual
label: B.1.562
has for description: England base, to Ireland

B.1.563 lineage
type: B.1.563
type: NamedIndividual
label: B.1.563
has for description: UK lineage

B.1.564 lineage
type: B.1.564
type: NamedIndividual
label: B.1.564
has for description: USA lineage, split out from B.1.369

B.1.564.1 lineage
type: B.1.564.1
type: NamedIndividual
label: B.1.564.1
has for description: Canada lineage

B.1.565 lineage
type: B.1.565
type: NamedIndividual
label: B.1.565
has for description: USA - contains previous B.1.139

B.1.566 lineage
type: B.1.566
type: NamedIndividual
label: B.1.566
has for description: USA - Arizona and Texas

B.1.567 lineage
type: B.1.567
type: NamedIndividual
label: B.1.567
has for description: USA lineage, formally part of B.1.2

B.1.568 lineage
type: B.1.568
type: NamedIndividual
label: B.1.568
has for description: USA lineage, split out from B.1.361

B.1.569 lineage
type: B.1.569
type: NamedIndividual
label: B.1.569
has for description: USA (CA and TX)

B.1.570 lineage
type: B.1.570
type: NamedIndividual
label: B.1.570
has for description: USA (CO)

B.1.571 lineage
type: B.1.571
type: NamedIndividual
label: B.1.571
has for description: USA lineage, split out from B.1.369

B.1.572 lineage
type: B.1.572
type: NamedIndividual
label: B.1.572
has for description: USA, split from B.1.325

B.1.573 lineage
type: B.1.573
type: NamedIndividual
label: B.1.573
has for description: Canada (BC)

B.1.574 lineage
type: B.1.574
type: NamedIndividual
label: B.1.574
has for description: USA lineage, split out from B.1.363

B.1.575 lineage
type: B.1.575
type: NamedIndividual
label: B.1.575
has for description: USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I".

B.1.575.1 lineage
type: B.1.575.1
type: NamedIndividual
label: B.1.575.1
has for description: Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I".

B.1.575.2 lineage
type: B.1.575.2
type: NamedIndividual
label: B.1.575.2
has for description: Spain lineage, from pango-designation issue #116

B.1.576 lineage
type: B.1.576
type: NamedIndividual
label: B.1.576
has for description: USA lineage, formally part of B.1.363

B.1.577 lineage
type: B.1.577
type: NamedIndividual
label: B.1.577
has for description: USA lineage, formally part of B.1.2

B.1.578 lineage
type: B.1.578
type: NamedIndividual
label: B.1.578
has for description: USA, formally part of B.1.313

B.1.579 lineage
type: B.1.579
type: NamedIndividual
label: B.1.579
has for description: USA (AZ) formally part of B.1.516

B.1.580 lineage
type: B.1.580
type: NamedIndividual
label: B.1.580
has for description: USA Southern (some B.1.361)

B.1.581 lineage
type: B.1.581
type: NamedIndividual
label: B.1.581
has for description: USA (TX)

B.1.582 lineage
type: B.1.582
type: NamedIndividual
label: B.1.582
has for description: USA (TX some B.1.361)

B.1.585 lineage
type: B.1.585
type: NamedIndividual
label: B.1.585
has for description: USA lineage

B.1.586 lineage
type: B.1.586
type: NamedIndividual
label: B.1.586
has for description: USA lineage (previously part of B.1.320 that jumped to a new part of the tree)

B.1.587 lineage
type: B.1.587
type: NamedIndividual
label: B.1.587
has for description: USA (OR) lineage

B.1.588 lineage
type: B.1.588
type: NamedIndividual
label: B.1.588
has for description: USA (NY/PR) lineage

B.1.588.1 lineage
type: B.1.588.1
type: NamedIndividual
label: B.1.588.1
has for description: Romanian lineage

B.1.589 lineage
type: B.1.589
type: NamedIndividual
label: B.1.589
has for description: USA lineage

B.1.590 lineage
type: B.1.590
type: NamedIndividual
label: B.1.590
has for description: USA lineage

B.1.591 lineage
type: B.1.591
type: NamedIndividual
label: B.1.591
has for description: USA lineage

B.1.592 lineage
type: B.1.592
type: NamedIndividual
label: B.1.592
has for description: Canadian lineage

B.1.593 lineage
type: B.1.593
type: NamedIndividual
label: B.1.593
has for description: USA lineage

B.1.594 lineage
type: B.1.594
type: NamedIndividual
label: B.1.594
has for description: USA lineage

B.1.595 lineage
type: B.1.595
type: NamedIndividual
label: B.1.595
has for description: USA (was B.1.2)

B.1.595.1 lineage
type: B.1.595.1
type: NamedIndividual
label: B.1.595.1
has for description: USA (FL into Louisiana)

B.1.595.2 lineage
type: B.1.595.2
type: NamedIndividual
label: B.1.595.2
has for description: USA (AZ)

B.1.595.3 lineage
type: B.1.595.3
type: NamedIndividual
label: B.1.595.3
has for description: USA (up the east coast)

B.1.595.4 lineage
type: B.1.595.4
type: NamedIndividual
label: B.1.595.4
has for description: USA (MN)

B.1.596 lineage
type: B.1.596
type: NamedIndividual
label: B.1.596
has for description: USA lineage

B.1.596.1 lineage
type: B.1.596.1
type: NamedIndividual
label: B.1.596.1
has for description: Kenyan lineage

B.1.597 lineage
type: B.1.597
type: NamedIndividual
label: B.1.597
has for description: France, Algeria (previously part of B.1.367 that jumped to a new part of the tree)

B.1.598 lineage
type: B.1.598
type: NamedIndividual
label: B.1.598
has for description: Canada (from NY)

B.1.599 lineage
type: B.1.599
type: NamedIndividual
label: B.1.599
has for description: USA, Canada (previously part of B.1.311 that jumped to a new part of the tree)

B.1.600 lineage
type: B.1.600
type: NamedIndividual
label: B.1.600
has for description: Bolivia/ Spain lineage

B.1.601 lineage
type: B.1.601
type: NamedIndividual
label: B.1.601
has for description: USA lineage

B.1.602 lineage
type: B.1.602
type: NamedIndividual
label: B.1.602
has for description: USA lineage

B.1.603 lineage
type: B.1.603
type: NamedIndividual
label: B.1.603
has for description: USA lineage

B.1.604 lineage
type: B.1.604
type: NamedIndividual
label: B.1.604
has for description: USA lineage

B.1.605 lineage
type: B.1.605
type: NamedIndividual
label: B.1.605
has for description: USA lineage

B.1.606 lineage
type: B.1.606
type: NamedIndividual
label: B.1.606
has for description: USA lineage (previously part of B.1.325 that jumped to a new part of the tree)

B.1.607 lineage
type: B.1.607
type: NamedIndividual
label: B.1.607
has for description: England (previously part of B.1.369 that jumped to a new part of the tree - could also be withdrawn).

B.1.609 lineage
type: B.1.609
type: NamedIndividual
label: B.1.609
has for description: USA/ Mexico lineage

B.1.610 lineage
type: B.1.610
type: NamedIndividual
label: B.1.610
has for description: UK lineage, previously part of B.1.235

B.1.611 lineage
type: B.1.611
type: NamedIndividual
label: B.1.611
has for description: Canada lineage

B.1.612 lineage
type: B.1.612
type: NamedIndividual
label: B.1.612
has for description: USA lineage, split out from B.1.361

B.1.613 lineage
type: B.1.613
type: NamedIndividual
label: B.1.613
has for description: Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262), split out from B.1.428

B.1.614 lineage
type: B.1.614
type: NamedIndividual
label: B.1.614
has for description: Sweden

B.1.615 lineage
type: B.1.615
type: NamedIndividual
label: B.1.615
has for description: Canada

B.1.616 lineage
type: B.1.616
type: NamedIndividual
label: B.1.616
has for description: France lineage, pango-designation issue #31

f20l
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: B.1.616 lineage
mutation name: f20l

t30i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#e
has for lineage: B.1.616 lineage
mutation name: t30i

h125y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#m
has for lineage: B.1.616 lineage
mutation name: h125y

t325i
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.616 lineage
mutation name: t325i

a8v
type: SNP
type: NamedIndividual
has for gene: orf10
has for lineage: B.1.616 lineage
mutation name: a8v

n1324s
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.616 lineage
mutation name: n1324s

s2261y
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.616 lineage
mutation name: s2261y

t1638i
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.616 lineage
mutation name: t1638i

y3160h
type: SNP
type: NamedIndividual
has for gene: orf1a
has for lineage: B.1.616 lineage
mutation name: y3160h

k2674r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.616 lineage
mutation name: k2674r

q813r
type: SNP
type: NamedIndividual
has for gene: orf1b
has for lineage: B.1.616 lineage
mutation name: q813r

del23/32
type: SNP
type: NamedIndividual
has for gene: orf6
has for lineage: B.1.616 lineage
mutation name: del23/32

*122r
type: SNP
type: NamedIndividual
has for gene: orf7a
has for lineage: B.1.616 lineage
mutation name: *122r

g669s
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.616 lineage
mutation name: g669s

h66d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.616 lineage
mutation name: h66d

n1187d
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.616 lineage
mutation name: n1187d

q949r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.616 lineage
mutation name: q949r

v483a
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.616 lineage
mutation name: v483a

B.1.617 lineage
type: B.1.617
type: NamedIndividual
label: B.1.617
has for description: Predominantly India lineage with several spike mutations, pango-designation issue #38

B.1.617.1 lineage
type: B.1.617.1
type: NamedIndividual
label: B.1.617.1
has for description: Predominantly India lineage with 484Q, pango-designation issue #49

B.1.617.2 lineage
type: B.1.617.2
type: NamedIndividual
label: B.1.617.2
has for description: Predominantly India lineage with several spike mutations, pango-designation issue #49

e156g
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: e156g

s26l
type: SNP
type: NamedIndividual
has for gene: orf3a
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: s26l

r203m
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: r203m

t19r
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#s
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
has for lineage: XAY lineage
has for lineage: XAY.1 lineage
has for lineage: XAY.2 lineage
mutation name: t19r

d377y
type: SNP
type: NamedIndividual
has for gene: https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#n
has for lineage: B.1.617.2 lineage
has for lineage: AY.1 lineage
has for lineage: AY.4 lineage
has for lineage: AY.4.2.1 lineage
has for lineage: AY.34 lineage
has for lineage: AY.108 lineage
mutation name: d377y