{ "cells": [ { "cell_type": "markdown", "metadata": { "toc": true }, "source": [ "
\n", " | value | \n", "
---|---|
serum_info | \n", "data/serum_info.yaml | \n", "
sample_list | \n", "data/sample_list.csv | \n", "
refseq | \n", "data/Perth09_HA_reference.fa | \n", "
renumbering_scheme | \n", "data/H3renumbering_scheme.csv | \n", "
seq_data_source | \n", "SRA_accession | \n", "
fastq_dir | \n", "results/FASTQ_files | \n", "
fastq_dump | \n", "fastq-dump | \n", "
ascp | \n", "/app/aspera-connect/3.7.5/bin/ascp | \n", "
asperakey | \n", "/app/aspera-connect/3.7.5/etc/asperaweb_id_dsa.openssh | \n", "
alignspecs | \n", "1,285,38,40 286,567,33,34 568,852,34,30 853,1137,34,31 1138,1422,36,29 1423,1701,39,44 | \n", "
R1trim | \n", "200 | \n", "
R2trim | \n", "165 | \n", "
ncpus | \n", "16 | \n", "
use_existing | \n", "yes | \n", "
avg_type | \n", "median | \n", "
natseqs | \n", "data/human_H3N2_HA_2007-2018.fasta.gz | \n", "
neut_config | \n", "data/neut_assays/neut_config.yaml | \n", "
figure_config | \n", "data/figure_config.yaml | \n", "
map_on_struct_template | \n", "map_on_struct_template.ipynb | \n", "
pdb_id | \n", "4o5n | \n", "
site_to_pdb | \n", "data/H3_site_to_PDB_4o5n.csv | \n", "
countsdir | \n", "results/codoncounts | \n", "
renumbcountsdir | \n", "results/renumbered_codoncounts | \n", "
selectiontabledir | \n", "results/selection_tables | \n", "
diffseldir | \n", "results/diffsel | \n", "
avgdiffseldir | \n", "results/avgdiffsel | \n", "
avgdiffsel_sigsites_dir | \n", "results/avgdiffsel/sigsites | \n", "
avgdiffsel_zoom_dir | \n", "results/avgdiffsel/zoomed_plots | \n", "
avgdiffsel_reps_dir | \n", "results/avgdiffsel/replicates | \n", "
avgdiffsel_full_dir | \n", "results/avgdiffsel/full_logo_plots | \n", "
natseqs_dir | \n", "results/natseqs | \n", "
neutresultsdir | \n", "results/neutralization_assays | \n", "
structsdir | \n", "results/structs | \n", "
figsdir | \n", "results/figures | \n", "
finalfigsdir | \n", "results/figures/final | \n", "
notebookdir | \n", "results/notebooks | \n", "
serum | \n", "serum_description | \n", "serum_group | \n", "serum_name | \n", "serum_species | \n", "serum_vaccination | \n", "
---|---|---|---|---|---|
mock | \n", "no-serum control | \n", "mock | \n", "no-serum | \n", "NaN | \n", "NaN | \n", "
plasmid | \n", "plasmid used as control to estimate sequencing error rate | \n", "plasmid | \n", "plasmid | \n", "NaN | \n", "NaN | \n", "
5A01 | \n", "site B-targeting monoclonal antibody 5A01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-5A01 | \n", "NaN | \n", "NaN | \n", "
3C04 | \n", "site B-targeting monoclonal antibody 3C04 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C04 | \n", "NaN | \n", "NaN | \n", "
3C06 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "
4C01 | \n", "site B-targeting monoclonal antibody 4C01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-4C01 | \n", "NaN | \n", "NaN | \n", "
4F03 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "
1C04 | \n", "lower head-targeting monoclonal antibody 1C04 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-1C04 | \n", "NaN | \n", "NaN | \n", "
f9267neg | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-1-preinf | \n", "ferret | \n", "pre | \n", "
f9267d23 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-1-postinf | \n", "ferret | \n", "post | \n", "
f9435neg | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-2-preinf | \n", "ferret | \n", "pre | \n", "
f9435d23 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-2-postinf | \n", "ferret | \n", "post | \n", "
f9437neg | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-3-preinf | \n", "ferret | \n", "pre | \n", "
f9437d23 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-3-postinf | \n", "ferret | \n", "post | \n", "
WHOCCPerth | \n", "ferret infected by Melbourne WHO CC with their Perth/2009 strain | \n", "ferret | \n", "WHO-Perth2009 | \n", "ferret | \n", "post | \n", "
WHOCCVic | \n", "ferret infected by Melbourne WHO CC with their Victoria/2011 strain | \n", "ferret | \n", "WHO-Victoria2011 | \n", "ferret | \n", "post | \n", "
VIDD1 | \n", "collected at Hutch in 2/2010 from person born in 1989 | \n", "VIDD_sera | \n", "2010-age-21 | \n", "human | \n", "NaN | \n", "
VIDD2 | \n", "collected at Hutch in 1/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53 | \n", "human | \n", "NaN | \n", "
VIDD3 | \n", "second sample collected at Hutch in 3/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53-plus-2-months | \n", "human | \n", "NaN | \n", "
VIDD4 | \n", "collected at Hutch in 11/2008 from person born in 1945 | \n", "VIDD_sera | \n", "2009-age-64 | \n", "human | \n", "NaN | \n", "
VIDD5 | \n", "collected at Hutch in 6/2009 from person born in 1944 | \n", "VIDD_sera | \n", "2009-age-65 | \n", "human | \n", "NaN | \n", "
557v1 | \n", "collected before 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-prevacc | \n", "human | \n", "pre | \n", "
557v2 | \n", "collected after 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-vacc | \n", "human | \n", "post | \n", "
574v1 | \n", "collected before 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-prevacc | \n", "human | \n", "pre | \n", "
574v2 | \n", "collected after 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-vacc | \n", "human | \n", "post | \n", "
589v1 | \n", "collected before 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-prevacc | \n", "human | \n", "pre | \n", "
589v2 | \n", "collected after 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-vacc | \n", "human | \n", "post | \n", "
571v1 | \n", "collected before 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-prevacc | \n", "human | \n", "pre | \n", "
571v2 | \n", "collected after 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-vacc | \n", "human | \n", "post | \n", "
VIDD5andlow4F03 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at low stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-low-4F03 | \n", "human | \n", "NaN | \n", "
VIDD5andmid4F03 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at medium stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-mid-4F03 | \n", "human | \n", "NaN | \n", "
VIDD5andhi4F03 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at high stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "human | \n", "NaN | \n", "
sample | \n", "serum | \n", "library | \n", "date | \n", "serum_dilution | \n", "percent_infectivity | \n", "SRA_accession | \n", "
---|---|---|---|---|---|---|
L2-3C06 | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.0100 | \n", "SRR7974483 | \n", "
L4-3C06 | \n", "3C06 | \n", "lib1 | \n", "2018-09-12 | \n", "0.1 | \n", "0.0688 | \n", "SRR7974503 | \n", "
L2-3C04 | \n", "3C04 | \n", "lib2 | \n", "2018-07-20 | \n", "0.65 | \n", "0.0331 | \n", "SRR7974490 | \n", "
L4-3C04 | \n", "3C04 | \n", "lib1 | \n", "2018-09-12 | \n", "0.1 | \n", "0.0777 | \n", "SRR7974499 | \n", "
L2-4C01 | \n", "4C01 | \n", "lib2 | \n", "2018-07-20 | \n", "0.60 | \n", "0.0185 | \n", "SRR7974491 | \n", "
L4-4C01 | \n", "4C01 | \n", "lib1 | \n", "2018-09-12 | \n", "0.2 | \n", "0.1190 | \n", "SRR7974488 | \n", "
L2-1C04 | \n", "1C04 | \n", "lib2 | \n", "2018-07-20 | \n", "16.0 | \n", "10.3190 | \n", "SRR7974492 | \n", "
L3-1C04 | \n", "1C04 | \n", "lib3 | \n", "2018-09-12 | \n", "18.0 | \n", "7.9040 | \n", "SRR7974497 | \n", "
Lib2mock-mAb | \n", "mock | \n", "lib2 | \n", "2018-07-20 | \n", "NaN | \n", "100.0000 | \n", "SRR7974494 | \n", "
Lib3mock-mAb | \n", "mock | \n", "lib3 | \n", "2018-09-12 | \n", "NaN | \n", "100.0000 | \n", "SRR7974507 | \n", "
Lib4mock-mAb | \n", "mock | \n", "lib1 | \n", "2018-09-12 | \n", "NaN | \n", "100.0000 | \n", "SRR7974486 | \n", "
WTplasmid-mAb-A | \n", "plasmid | \n", "lib2 | \n", "2018-07-20 | \n", "NaN | \n", "NaN | \n", "SRR7974495 | \n", "
WTplasmid-mAb-B | \n", "plasmid | \n", "lib3 | \n", "2018-09-12 | \n", "NaN | \n", "NaN | \n", "SRR7974502 | \n", "
WTplasmid-mAb-C | \n", "plasmid | \n", "lib1 | \n", "2018-09-12 | \n", "NaN | \n", "NaN | \n", "SRR7974484 | \n", "
L4-589v1 | \n", "589v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "13.8200 | \n", "SRR8875142 | \n", "
L4-571v1 | \n", "571v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "19.6200 | \n", "SRR8875143 | \n", "
L4-571v2 | \n", "571v2 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "5.4800 | \n", "SRR8875144 | \n", "
L4-574v1 | \n", "574v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "9.4800 | \n", "SRR8875145 | \n", "
L4-WHOCCPerth | \n", "WHOCCPerth | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "2.3200 | \n", "SRR8875138 | \n", "
L4-589v2 | \n", "589v2 | \n", "lib1 | \n", "2018-11-14 | \n", "0.000875 | \n", "4.5800 | \n", "SRR8875139 | \n", "
L4-557v1 | \n", "557v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0075 | \n", "6.9000 | \n", "SRR8875140 | \n", "
L4-f9267neg | \n", "f9267neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.00075 | \n", "100.0000 | \n", "SRR8875141 | \n", "
L4-f9267d23 | \n", "f9267d23 | \n", "lib1 | \n", "2018-11-14 | \n", "0.00075 | \n", "4.3600 | \n", "SRR8875136 | \n", "
L4-f9435neg | \n", "f9435neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.001 | \n", "100.0000 | \n", "SRR8875137 | \n", "
L4-f9437neg | \n", "f9437neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.00225 | \n", "100.0000 | \n", "SRR8875168 | \n", "
L4-f9437d23 | \n", "f9437d23 | \n", "lib1 | \n", "2018-11-14 | \n", "0.00225 | \n", "8.7700 | \n", "SRR8875169 | \n", "
Lib4mock-A | \n", "mock | \n", "lib1 | \n", "2018-11-14 | \n", "NaN | \n", "100.0000 | \n", "SRR8875170 | \n", "
WTplasmid-A | \n", "plasmid | \n", "lib1 | \n", "2018-11-14 | \n", "NaN | \n", "NaN | \n", "SRR8875171 | \n", "
L5-f9267neg | \n", "f9267neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.00075 | \n", "100.0000 | \n", "SRR8875172 | \n", "
L5-f9435neg | \n", "f9435neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.0025 | \n", "100.0000 | \n", "SRR8875173 | \n", "
L5-f9437neg | \n", "f9437neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.00625 | \n", "100.0000 | \n", "SRR8875174 | \n", "
L5-VIDD1 | \n", "VIDD1 | \n", "lib2 | \n", "2019-01-16 | \n", "0.0045 | \n", "5.9500 | \n", "SRR8875175 | \n", "
L5-WHOCCPerth | \n", "WHOCCPerth | \n", "lib2 | \n", "2019-01-16 | \n", "0.0075 | \n", "1.8800 | \n", "SRR8875166 | \n", "
L5-f9267d23 | \n", "f9267d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000175 | \n", "5.3500 | \n", "SRR8875167 | \n", "
L5-WHOCCVic | \n", "WHOCCVic | \n", "lib2 | \n", "2019-01-16 | \n", "0.0025 | \n", "3.9000 | \n", "SRR8875191 | \n", "
L5-VIDD5 | \n", "VIDD5 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000875 | \n", "5.2400 | \n", "SRR8875190 | \n", "
L5-VIDD4 | \n", "VIDD4 | \n", "lib2 | \n", "2019-01-16 | \n", "0.001675 | \n", "0.8700 | \n", "SRR8875193 | \n", "
L5-VIDD2 | \n", "VIDD2 | \n", "lib2 | \n", "2019-01-16 | \n", "0.00375 | \n", "2.0300 | \n", "SRR8875192 | \n", "
L5-VIDD3 | \n", "VIDD3 | \n", "lib2 | \n", "2019-01-16 | \n", "0.0045 | \n", "1.7300 | \n", "SRR8875187 | \n", "
L5-f9435d23 | \n", "f9435d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000625 | \n", "1.8800 | \n", "SRR8875186 | \n", "
L5-f9437d23 | \n", "f9437d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.001375 | \n", "1.7000 | \n", "SRR8875189 | \n", "
Lib5mock-A | \n", "mock | \n", "lib2 | \n", "2019-01-16 | \n", "NaN | \n", "100.0000 | \n", "SRR8875188 | \n", "
WTplasmid-B | \n", "plasmid | \n", "lib2 | \n", "2019-01-16 | \n", "NaN | \n", "NaN | \n", "SRR8875195 | \n", "
L4-f9435d23 | \n", "f9435d23 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0025 | \n", "3.4500 | \n", "SRR8875194 | \n", "
L4-VIDD4 | \n", "VIDD4 | \n", "lib1 | \n", "2019-01-16 | \n", "0.004 | \n", "10.7400 | \n", "SRR8875112 | \n", "
L4-VIDD3 | \n", "VIDD3 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0075 | \n", "5.9800 | \n", "SRR8875113 | \n", "
L4-WHOCCVic | \n", "WHOCCVic | \n", "lib1 | \n", "2019-01-16 | \n", "0.00625 | \n", "1.2600 | \n", "SRR8875110 | \n", "
L4-VIDD1 | \n", "VIDD1 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0175 | \n", "4.0800 | \n", "SRR8875111 | \n", "
L4-VIDD2 | \n", "VIDD2 | \n", "lib1 | \n", "2019-01-16 | \n", "0.00875 | \n", "3.7400 | \n", "SRR8875108 | \n", "
Lib4mock-B | \n", "mock | \n", "lib1 | \n", "2019-01-16 | \n", "NaN | \n", "100.0000 | \n", "SRR8875109 | \n", "
WTplasmid-C | \n", "plasmid | \n", "lib1 | \n", "2019-01-16 | \n", "NaN | \n", "NaN | \n", "SRR8875106 | \n", "
L5-589v1 | \n", "589v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0175 | \n", "20.3200 | \n", "SRR8875107 | \n", "
L5-557v2 | \n", "557v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0005 | \n", "0.8100 | \n", "SRR8875114 | \n", "
L5-571v2 | \n", "571v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.01 | \n", "1.0900 | \n", "SRR8875115 | \n", "
L5-574v1 | \n", "574v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0125 | \n", "7.5700 | \n", "SRR8875119 | \n", "
L5-574v2 | \n", "574v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875 | \n", "1.1100 | \n", "SRR8875118 | \n", "
L5-4F03-c1 | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.3 | \n", "22.9900 | \n", "SRR8875117 | \n", "
L5-4F03-c3 | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "1.5 | \n", "3.7100 | \n", "SRR8875116 | \n", "
L6-589v2 | \n", "589v2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.000375 | \n", "4.0600 | \n", "SRR8875123 | \n", "
L6-557v1 | \n", "557v1 | \n", "lib3 | \n", "2019-03-06 | \n", "0.005 | \n", "1.5700 | \n", "SRR8875122 | \n", "
L6-557v2 | \n", "557v2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.0005 | \n", "1.6400 | \n", "SRR8875121 | \n", "
L6-VIDD2 | \n", "VIDD2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00375 | \n", "6.2200 | \n", "SRR8875120 | \n", "
L6-VIDD3 | \n", "VIDD3 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00625 | \n", "1.1200 | \n", "SRR8875125 | \n", "
L6-VIDD1 | \n", "VIDD1 | \n", "lib3 | \n", "2019-03-06 | \n", "0.0075 | \n", "3.6800 | \n", "SRR8875124 | \n", "
L6-f9267d23 | \n", "f9267d23 | \n", "lib3 | \n", "2019-03-06 | \n", "0.000375 | \n", "1.6900 | \n", "SRR8875132 | \n", "
L6-f9435d23 | \n", "f9435d23 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00125 | \n", "3.0400 | \n", "SRR8875133 | \n", "
L6-WHOCCPerth | \n", "WHOCCPerth | \n", "lib3 | \n", "2019-03-06 | \n", "0.0075 | \n", "4.1000 | \n", "SRR8875134 | \n", "
L6-WHOCCVic | \n", "WHOCCVic | \n", "lib3 | \n", "2019-03-06 | \n", "0.0025 | \n", "3.6200 | \n", "SRR8875135 | \n", "
Lib5mock-B | \n", "mock | \n", "lib2 | \n", "2019-03-06 | \n", "NaN | \n", "100.0000 | \n", "SRR8875128 | \n", "
Lib6mock-A | \n", "mock | \n", "lib3 | \n", "2019-03-06 | \n", "NaN | \n", "100.0000 | \n", "SRR8875129 | \n", "
WTplasmid-D | \n", "plasmid | \n", "lib2 | \n", "2019-03-06 | \n", "NaN | \n", "NaN | \n", "SRR8875130 | \n", "
WTplasmid-E | \n", "plasmid | \n", "lib3 | \n", "2019-03-06 | \n", "NaN | \n", "NaN | \n", "SRR8875131 | \n", "
L5-589v2 | \n", "589v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000375 | \n", "4.6800 | \n", "SRR8875126 | \n", "
L5-557v1 | \n", "557v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.005 | \n", "2.3100 | \n", "SRR8875127 | \n", "
L5-571v1 | \n", "571v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0185 | \n", "11.8600 | \n", "SRR8875149 | \n", "
L5-5A01 | \n", "5A01 | \n", "lib2 | \n", "2019-03-06 | \n", "0.025 | \n", "1.3600 | \n", "SRR8875148 | \n", "
L5-4F03-c2 | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.7 | \n", "4.7100 | \n", "SRR8875151 | \n", "
L5-VIDD5-low4F03 | \n", "VIDD5andlow4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+0.3 | \n", "5.0000 | \n", "SRR8875150 | \n", "
L5-VIDD5-mid4F03 | \n", "VIDD5andmid4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+0.7 | \n", "0.4600 | \n", "SRR8875153 | \n", "
L5-VIDD5-hi4F03 | \n", "VIDD5andhi4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+1.5 | \n", "0.0400 | \n", "SRR8875152 | \n", "
L4-574v2 | \n", "574v2 | \n", "lib1 | \n", "2019-03-06 | \n", "0.002 | \n", "1.5400 | \n", "SRR8875155 | \n", "
L4-557v2 | \n", "557v2 | \n", "lib1 | \n", "2019-03-06 | \n", "0.00125 | \n", "1.5300 | \n", "SRR8875154 | \n", "
L4-5A01 | \n", "5A01 | \n", "lib1 | \n", "2019-03-06 | \n", "0.07 | \n", "4.3200 | \n", "SRR8875147 | \n", "
L4-4F03-c2 | \n", "4F03 | \n", "lib1 | \n", "2019-03-06 | \n", "1.0 | \n", "3.4700 | \n", "SRR8875146 | \n", "
L4-4F03-c3 | \n", "4F03 | \n", "lib1 | \n", "2019-03-06 | \n", "2.0 | \n", "0.7800 | \n", "SRR8875160 | \n", "
Lib4mock-C | \n", "mock | \n", "lib1 | \n", "2019-03-06 | \n", "NaN | \n", "100.0000 | \n", "SRR8875161 | \n", "
WTplasmid-F | \n", "plasmid | \n", "lib1 | \n", "2019-03-06 | \n", "NaN | \n", "NaN | \n", "SRR8875158 | \n", "
L6-589v1 | \n", "589v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.0175 | \n", "18.4000 | \n", "SRR8875159 | \n", "
L6-571v1 | \n", "571v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.0185 | \n", "27.7400 | \n", "SRR8875164 | \n", "
L6-571v2 | \n", "571v2 | \n", "lib3 | \n", "2019-03-26 | \n", "0.005 | \n", "7.7900 | \n", "SRR8875165 | \n", "
L6-574v1 | \n", "574v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.015 | \n", "3.3000 | \n", "SRR8875162 | \n", "
L6-574v2 | \n", "574v2 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00075 | \n", "1.9200 | \n", "SRR8875163 | \n", "
L6-f9267neg | \n", "f9267neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.00075 | \n", "100.0000 | \n", "SRR8875156 | \n", "
L6-f9435neg | \n", "f9435neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.0025 | \n", "100.0000 | \n", "SRR8875157 | \n", "
L6-f9437neg | \n", "f9437neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.00625 | \n", "100.0000 | \n", "SRR8875183 | \n", "
L6-5A01 | \n", "5A01 | \n", "lib3 | \n", "2019-03-26 | \n", "0.025 | \n", "1.0200 | \n", "SRR8875182 | \n", "
Lib6mock-B | \n", "mock | \n", "lib3 | \n", "2019-03-26 | \n", "NaN | \n", "100.0000 | \n", "SRR8875181 | \n", "
L4-4F03-c1 | \n", "4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.3 | \n", "28.2400 | \n", "SRR8875180 | \n", "
L6-VIDD5 | \n", "VIDD5 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002 | \n", "5.5800 | \n", "SRR8875179 | \n", "
L6-VIDD4 | \n", "VIDD4 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00375 | \n", "0.2600 | \n", "SRR8875178 | \n", "
L6-f9437d23 | \n", "f9437d23 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00175 | \n", "5.7800 | \n", "SRR8875177 | \n", "
L6-4F03-c1 | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.3 | \n", "23.9100 | \n", "SRR8875176 | \n", "
L6-4F03-c3 | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "1.4 | \n", "0.8400 | \n", "SRR8875185 | \n", "
L4-VIDD5 | \n", "VIDD5 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375 | \n", "1.7700 | \n", "SRR8875184 | \n", "
L4-VIDD5-low4F03 | \n", "VIDD5andlow4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+0.3 | \n", "0.0300 | \n", "SRR8875196 | \n", "
L4-VIDD5-mid4F03 | \n", "VIDD5andmid4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+1 | \n", "0.0037 | \n", "SRR8875197 | \n", "
L4-VIDD5-hi4F03 | \n", "VIDD5andhi4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+2 | \n", "0.0016 | \n", "SRR8875198 | \n", "
L6-4F03-c2 | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.75 | \n", "7.1600 | \n", "SRR8875199 | \n", "
L6-VIDD5-low4F03 | \n", "VIDD5andlow4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+0.3 | \n", "0.2040 | \n", "SRR8875200 | \n", "
L6-VIDD5-mid4F03 | \n", "VIDD5andmid4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+0.75 | \n", "0.0077 | \n", "SRR8875201 | \n", "
L6-VIDD5-hi4F03 | \n", "VIDD5andhi4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+1.4 | \n", "0.0032 | \n", "SRR8875202 | \n", "
Lib4mock-D | \n", "mock | \n", "lib1 | \n", "2019-03-26 | \n", "NaN | \n", "100.0000 | \n", "SRR8875203 | \n", "
WTplasmid-G | \n", "plasmid | \n", "lib1 | \n", "2019-03-26 | \n", "NaN | \n", "NaN | \n", "SRR8875204 | \n", "
WTplasmid-H | \n", "plasmid | \n", "lib3 | \n", "2019-03-26 | \n", "NaN | \n", "NaN | \n", "SRR8875205 | \n", "
serum_name_formatted | \n", "name | \n", "sel | \n", "mock | \n", "err | \n", "serum | \n", "library | \n", "date | \n", "serum_dilution | \n", "percent_infectivity | \n", "serum_description | \n", "serum_group | \n", "serum_name | \n", "serum_species | \n", "serum_vaccination | \n", "name_formatted | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.0100 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "
antibody-3C06 | \n", "lib1-0.069 | \n", "L4-3C06 | \n", "Lib4mock-mAb | \n", "WTplasmid-mAb-C | \n", "3C06 | \n", "lib1 | \n", "2018-09-12 | \n", "0.1 | \n", "0.0688 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib1, 0.069% infectivity | \n", "
antibody-3C04 | \n", "lib2-0.033 | \n", "L2-3C04 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C04 | \n", "lib2 | \n", "2018-07-20 | \n", "0.65 | \n", "0.0331 | \n", "site B-targeting monoclonal antibody 3C04 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C04 | \n", "NaN | \n", "NaN | \n", "lib2, 0.033% infectivity | \n", "
antibody-3C04 | \n", "lib1-0.078 | \n", "L4-3C04 | \n", "Lib4mock-mAb | \n", "WTplasmid-mAb-C | \n", "3C04 | \n", "lib1 | \n", "2018-09-12 | \n", "0.1 | \n", "0.0777 | \n", "site B-targeting monoclonal antibody 3C04 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C04 | \n", "NaN | \n", "NaN | \n", "lib1, 0.078% infectivity | \n", "
antibody-4C01 | \n", "lib2-0.018 | \n", "L2-4C01 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "4C01 | \n", "lib2 | \n", "2018-07-20 | \n", "0.60 | \n", "0.0185 | \n", "site B-targeting monoclonal antibody 4C01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-4C01 | \n", "NaN | \n", "NaN | \n", "lib2, 0.018% infectivity | \n", "
antibody-4C01 | \n", "lib1-0.12 | \n", "L4-4C01 | \n", "Lib4mock-mAb | \n", "WTplasmid-mAb-C | \n", "4C01 | \n", "lib1 | \n", "2018-09-12 | \n", "0.2 | \n", "0.1190 | \n", "site B-targeting monoclonal antibody 4C01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-4C01 | \n", "NaN | \n", "NaN | \n", "lib1, 0.12% infectivity | \n", "
antibody-1C04 | \n", "lib2-10 | \n", "L2-1C04 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "1C04 | \n", "lib2 | \n", "2018-07-20 | \n", "16.0 | \n", "10.3190 | \n", "lower head-targeting monoclonal antibody 1C04 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-1C04 | \n", "NaN | \n", "NaN | \n", "lib2, 10% infectivity | \n", "
antibody-1C04 | \n", "lib3-7.9 | \n", "L3-1C04 | \n", "Lib3mock-mAb | \n", "WTplasmid-mAb-B | \n", "1C04 | \n", "lib3 | \n", "2018-09-12 | \n", "18.0 | \n", "7.9040 | \n", "lower head-targeting monoclonal antibody 1C04 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-1C04 | \n", "NaN | \n", "NaN | \n", "lib3, 7.9% infectivity | \n", "
2015-age-48-prevacc | \n", "lib1-14 | \n", "L4-589v1 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "589v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "13.8200 | \n", "collected before 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-prevacc | \n", "human | \n", "pre | \n", "lib1, 14% infectivity | \n", "
2015-age-48-prevacc | \n", "lib2-20 | \n", "L5-589v1 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "589v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0175 | \n", "20.3200 | \n", "collected before 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-prevacc | \n", "human | \n", "pre | \n", "lib2, 20% infectivity | \n", "
2015-age-48-prevacc | \n", "lib3-18 | \n", "L6-589v1 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "589v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.0175 | \n", "18.4000 | \n", "collected before 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-prevacc | \n", "human | \n", "pre | \n", "lib3, 18% infectivity | \n", "
2015-age-49-prevacc | \n", "lib1-20 | \n", "L4-571v1 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "571v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "19.6200 | \n", "collected before 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-prevacc | \n", "human | \n", "pre | \n", "lib1, 20% infectivity | \n", "
2015-age-49-prevacc | \n", "lib2-12 | \n", "L5-571v1 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "571v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0185 | \n", "11.8600 | \n", "collected before 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-prevacc | \n", "human | \n", "pre | \n", "lib2, 12% infectivity | \n", "
2015-age-49-prevacc | \n", "lib3-28 | \n", "L6-571v1 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "571v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.0185 | \n", "27.7400 | \n", "collected before 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-prevacc | \n", "human | \n", "pre | \n", "lib3, 28% infectivity | \n", "
2015-age-49-vacc | \n", "lib1-5.5 | \n", "L4-571v2 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "571v2 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "5.4800 | \n", "collected after 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-vacc | \n", "human | \n", "post | \n", "lib1, 5.5% infectivity | \n", "
2015-age-49-vacc | \n", "lib2-1.1 | \n", "L5-571v2 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "571v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.01 | \n", "1.0900 | \n", "collected after 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-vacc | \n", "human | \n", "post | \n", "lib2, 1.1% infectivity | \n", "
2015-age-49-vacc | \n", "lib3-7.8 | \n", "L6-571v2 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "571v2 | \n", "lib3 | \n", "2019-03-26 | \n", "0.005 | \n", "7.7900 | \n", "collected after 2015/2016 vaccine from person born in 1966 | \n", "Hensley_sera | \n", "2015-age-49-vacc | \n", "human | \n", "post | \n", "lib3, 7.8% infectivity | \n", "
2015-age-29-prevacc | \n", "lib1-9.5 | \n", "L4-574v1 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "574v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "9.4800 | \n", "collected before 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-prevacc | \n", "human | \n", "pre | \n", "lib1, 9.5% infectivity | \n", "
2015-age-29-prevacc | \n", "lib2-7.6 | \n", "L5-574v1 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "574v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0125 | \n", "7.5700 | \n", "collected before 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-prevacc | \n", "human | \n", "pre | \n", "lib2, 7.6% infectivity | \n", "
2015-age-29-prevacc | \n", "lib3-3.3 | \n", "L6-574v1 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "574v1 | \n", "lib3 | \n", "2019-03-26 | \n", "0.015 | \n", "3.3000 | \n", "collected before 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-prevacc | \n", "human | \n", "pre | \n", "lib3, 3.3% infectivity | \n", "
ferret-WHO-Perth2009 | \n", "lib1-2.3 | \n", "L4-WHOCCPerth | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "WHOCCPerth | \n", "lib1 | \n", "2018-11-14 | \n", "0.0185 | \n", "2.3200 | \n", "ferret infected by Melbourne WHO CC with their Perth/2009 strain | \n", "ferret | \n", "WHO-Perth2009 | \n", "ferret | \n", "post | \n", "lib1, 2.3% infectivity | \n", "
ferret-WHO-Perth2009 | \n", "lib2-1.9 | \n", "L5-WHOCCPerth | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "WHOCCPerth | \n", "lib2 | \n", "2019-01-16 | \n", "0.0075 | \n", "1.8800 | \n", "ferret infected by Melbourne WHO CC with their Perth/2009 strain | \n", "ferret | \n", "WHO-Perth2009 | \n", "ferret | \n", "post | \n", "lib2, 1.9% infectivity | \n", "
ferret-WHO-Perth2009 | \n", "lib3-4.1 | \n", "L6-WHOCCPerth | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "WHOCCPerth | \n", "lib3 | \n", "2019-03-06 | \n", "0.0075 | \n", "4.1000 | \n", "ferret infected by Melbourne WHO CC with their Perth/2009 strain | \n", "ferret | \n", "WHO-Perth2009 | \n", "ferret | \n", "post | \n", "lib3, 4.1% infectivity | \n", "
2015-age-48-vacc | \n", "lib1-4.6 | \n", "L4-589v2 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "589v2 | \n", "lib1 | \n", "2018-11-14 | \n", "0.000875 | \n", "4.5800 | \n", "collected after 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-vacc | \n", "human | \n", "post | \n", "lib1, 4.6% infectivity | \n", "
2015-age-48-vacc | \n", "lib2-4.7 | \n", "L5-589v2 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "589v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000375 | \n", "4.6800 | \n", "collected after 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-vacc | \n", "human | \n", "post | \n", "lib2, 4.7% infectivity | \n", "
2015-age-48-vacc | \n", "lib3-4.1 | \n", "L6-589v2 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "589v2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.000375 | \n", "4.0600 | \n", "collected after 2015/2016 vaccine from person born in 1967 | \n", "Hensley_sera | \n", "2015-age-48-vacc | \n", "human | \n", "post | \n", "lib3, 4.1% infectivity | \n", "
2015-age-25-prevacc | \n", "lib1-6.9 | \n", "L4-557v1 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "557v1 | \n", "lib1 | \n", "2018-11-14 | \n", "0.0075 | \n", "6.9000 | \n", "collected before 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-prevacc | \n", "human | \n", "pre | \n", "lib1, 6.9% infectivity | \n", "
2015-age-25-prevacc | \n", "lib2-2.3 | \n", "L5-557v1 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "557v1 | \n", "lib2 | \n", "2019-03-06 | \n", "0.005 | \n", "2.3100 | \n", "collected before 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-prevacc | \n", "human | \n", "pre | \n", "lib2, 2.3% infectivity | \n", "
2015-age-25-prevacc | \n", "lib3-1.6 | \n", "L6-557v1 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "557v1 | \n", "lib3 | \n", "2019-03-06 | \n", "0.005 | \n", "1.5700 | \n", "collected before 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-prevacc | \n", "human | \n", "pre | \n", "lib3, 1.6% infectivity | \n", "
ferret-Pitt-1-preinf | \n", "lib1-100 | \n", "L4-f9267neg | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "f9267neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.00075 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-1-preinf | \n", "ferret | \n", "pre | \n", "lib1, 100% infectivity | \n", "
ferret-Pitt-1-preinf | \n", "lib2-100 | \n", "L5-f9267neg | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9267neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.00075 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-1-preinf | \n", "ferret | \n", "pre | \n", "lib2, 100% infectivity | \n", "
ferret-Pitt-1-preinf | \n", "lib3-100 | \n", "L6-f9267neg | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "f9267neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.00075 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-1-preinf | \n", "ferret | \n", "pre | \n", "lib3, 100% infectivity | \n", "
ferret-Pitt-1-postinf | \n", "lib1-4.4 | \n", "L4-f9267d23 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "f9267d23 | \n", "lib1 | \n", "2018-11-14 | \n", "0.00075 | \n", "4.3600 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-1-postinf | \n", "ferret | \n", "post | \n", "lib1, 4.4% infectivity | \n", "
ferret-Pitt-1-postinf | \n", "lib2-5.3 | \n", "L5-f9267d23 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9267d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000175 | \n", "5.3500 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-1-postinf | \n", "ferret | \n", "post | \n", "lib2, 5.3% infectivity | \n", "
ferret-Pitt-1-postinf | \n", "lib3-1.7 | \n", "L6-f9267d23 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "f9267d23 | \n", "lib3 | \n", "2019-03-06 | \n", "0.000375 | \n", "1.6900 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-1-postinf | \n", "ferret | \n", "post | \n", "lib3, 1.7% infectivity | \n", "
ferret-Pitt-2-preinf | \n", "lib1-100 | \n", "L4-f9435neg | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "f9435neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.001 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-2-preinf | \n", "ferret | \n", "pre | \n", "lib1, 100% infectivity | \n", "
ferret-Pitt-2-preinf | \n", "lib2-100 | \n", "L5-f9435neg | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9435neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.0025 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-2-preinf | \n", "ferret | \n", "pre | \n", "lib2, 100% infectivity | \n", "
ferret-Pitt-2-preinf | \n", "lib3-100 | \n", "L6-f9435neg | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "f9435neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.0025 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-2-preinf | \n", "ferret | \n", "pre | \n", "lib3, 100% infectivity | \n", "
ferret-Pitt-3-preinf | \n", "lib1-100 | \n", "L4-f9437neg | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "f9437neg | \n", "lib1 | \n", "2018-11-14 | \n", "0.00225 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-3-preinf | \n", "ferret | \n", "pre | \n", "lib1, 100% infectivity | \n", "
ferret-Pitt-3-preinf | \n", "lib2-100 | \n", "L5-f9437neg | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9437neg | \n", "lib2 | \n", "2019-01-16 | \n", "0.00625 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-3-preinf | \n", "ferret | \n", "pre | \n", "lib2, 100% infectivity | \n", "
ferret-Pitt-3-preinf | \n", "lib3-100 | \n", "L6-f9437neg | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "f9437neg | \n", "lib3 | \n", "2019-03-26 | \n", "0.00625 | \n", "100.0000 | \n", "Lakdawala lab ferret, before infection | \n", "ferret | \n", "Pitt-3-preinf | \n", "ferret | \n", "pre | \n", "lib3, 100% infectivity | \n", "
ferret-Pitt-3-postinf | \n", "lib1-8.8 | \n", "L4-f9437d23 | \n", "Lib4mock-A | \n", "WTplasmid-A | \n", "f9437d23 | \n", "lib1 | \n", "2018-11-14 | \n", "0.00225 | \n", "8.7700 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-3-postinf | \n", "ferret | \n", "post | \n", "lib1, 8.8% infectivity | \n", "
ferret-Pitt-3-postinf | \n", "lib2-1.7 | \n", "L5-f9437d23 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9437d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.001375 | \n", "1.7000 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-3-postinf | \n", "ferret | \n", "post | \n", "lib2, 1.7% infectivity | \n", "
ferret-Pitt-3-postinf | \n", "lib3-5.8 | \n", "L6-f9437d23 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "f9437d23 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00175 | \n", "5.7800 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-3-postinf | \n", "ferret | \n", "post | \n", "lib3, 5.8% infectivity | \n", "
2010-age-21 | \n", "lib2-6.0 | \n", "L5-VIDD1 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "VIDD1 | \n", "lib2 | \n", "2019-01-16 | \n", "0.0045 | \n", "5.9500 | \n", "collected at Hutch in 2/2010 from person born in 1989 | \n", "VIDD_sera | \n", "2010-age-21 | \n", "human | \n", "NaN | \n", "lib2, 6.0% infectivity | \n", "
2010-age-21 | \n", "lib1-4.1 | \n", "L4-VIDD1 | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "VIDD1 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0175 | \n", "4.0800 | \n", "collected at Hutch in 2/2010 from person born in 1989 | \n", "VIDD_sera | \n", "2010-age-21 | \n", "human | \n", "NaN | \n", "lib1, 4.1% infectivity | \n", "
2010-age-21 | \n", "lib3-3.7 | \n", "L6-VIDD1 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "VIDD1 | \n", "lib3 | \n", "2019-03-06 | \n", "0.0075 | \n", "3.6800 | \n", "collected at Hutch in 2/2010 from person born in 1989 | \n", "VIDD_sera | \n", "2010-age-21 | \n", "human | \n", "NaN | \n", "lib3, 3.7% infectivity | \n", "
ferret-WHO-Victoria2011 | \n", "lib2-3.9 | \n", "L5-WHOCCVic | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "WHOCCVic | \n", "lib2 | \n", "2019-01-16 | \n", "0.0025 | \n", "3.9000 | \n", "ferret infected by Melbourne WHO CC with their Victoria/2011 strain | \n", "ferret | \n", "WHO-Victoria2011 | \n", "ferret | \n", "post | \n", "lib2, 3.9% infectivity | \n", "
ferret-WHO-Victoria2011 | \n", "lib1-1.3 | \n", "L4-WHOCCVic | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "WHOCCVic | \n", "lib1 | \n", "2019-01-16 | \n", "0.00625 | \n", "1.2600 | \n", "ferret infected by Melbourne WHO CC with their Victoria/2011 strain | \n", "ferret | \n", "WHO-Victoria2011 | \n", "ferret | \n", "post | \n", "lib1, 1.3% infectivity | \n", "
ferret-WHO-Victoria2011 | \n", "lib3-3.6 | \n", "L6-WHOCCVic | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "WHOCCVic | \n", "lib3 | \n", "2019-03-06 | \n", "0.0025 | \n", "3.6200 | \n", "ferret infected by Melbourne WHO CC with their Victoria/2011 strain | \n", "ferret | \n", "WHO-Victoria2011 | \n", "ferret | \n", "post | \n", "lib3, 3.6% infectivity | \n", "
2009-age-65 | \n", "lib2-5.2 | \n", "L5-VIDD5 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "VIDD5 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000875 | \n", "5.2400 | \n", "collected at Hutch in 6/2009 from person born in 1944 | \n", "VIDD_sera | \n", "2009-age-65 | \n", "human | \n", "NaN | \n", "lib2, 5.2% infectivity | \n", "
2009-age-65 | \n", "lib3-5.6 | \n", "L6-VIDD5 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "VIDD5 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002 | \n", "5.5800 | \n", "collected at Hutch in 6/2009 from person born in 1944 | \n", "VIDD_sera | \n", "2009-age-65 | \n", "human | \n", "NaN | \n", "lib3, 5.6% infectivity | \n", "
2009-age-65 | \n", "lib1-1.8 | \n", "L4-VIDD5 | \n", "Lib4mock-D | \n", "WTplasmid-G | \n", "VIDD5 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375 | \n", "1.7700 | \n", "collected at Hutch in 6/2009 from person born in 1944 | \n", "VIDD_sera | \n", "2009-age-65 | \n", "human | \n", "NaN | \n", "lib1, 1.8% infectivity | \n", "
2009-age-64 | \n", "lib2-0.87 | \n", "L5-VIDD4 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "VIDD4 | \n", "lib2 | \n", "2019-01-16 | \n", "0.001675 | \n", "0.8700 | \n", "collected at Hutch in 11/2008 from person born in 1945 | \n", "VIDD_sera | \n", "2009-age-64 | \n", "human | \n", "NaN | \n", "lib2, 0.87% infectivity | \n", "
2009-age-64 | \n", "lib1-11 | \n", "L4-VIDD4 | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "VIDD4 | \n", "lib1 | \n", "2019-01-16 | \n", "0.004 | \n", "10.7400 | \n", "collected at Hutch in 11/2008 from person born in 1945 | \n", "VIDD_sera | \n", "2009-age-64 | \n", "human | \n", "NaN | \n", "lib1, 11% infectivity | \n", "
2009-age-64 | \n", "lib3-0.26 | \n", "L6-VIDD4 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "VIDD4 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00375 | \n", "0.2600 | \n", "collected at Hutch in 11/2008 from person born in 1945 | \n", "VIDD_sera | \n", "2009-age-64 | \n", "human | \n", "NaN | \n", "lib3, 0.26% infectivity | \n", "
2009-age-53 | \n", "lib2-2.0 | \n", "L5-VIDD2 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "VIDD2 | \n", "lib2 | \n", "2019-01-16 | \n", "0.00375 | \n", "2.0300 | \n", "collected at Hutch in 1/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53 | \n", "human | \n", "NaN | \n", "lib2, 2.0% infectivity | \n", "
2009-age-53 | \n", "lib1-3.7 | \n", "L4-VIDD2 | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "VIDD2 | \n", "lib1 | \n", "2019-01-16 | \n", "0.00875 | \n", "3.7400 | \n", "collected at Hutch in 1/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53 | \n", "human | \n", "NaN | \n", "lib1, 3.7% infectivity | \n", "
2009-age-53 | \n", "lib3-6.2 | \n", "L6-VIDD2 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "VIDD2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00375 | \n", "6.2200 | \n", "collected at Hutch in 1/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53 | \n", "human | \n", "NaN | \n", "lib3, 6.2% infectivity | \n", "
2009-age-53-plus-2-months | \n", "lib2-1.7 | \n", "L5-VIDD3 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "VIDD3 | \n", "lib2 | \n", "2019-01-16 | \n", "0.0045 | \n", "1.7300 | \n", "second sample collected at Hutch in 3/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53-plus-2-months | \n", "human | \n", "NaN | \n", "lib2, 1.7% infectivity | \n", "
2009-age-53-plus-2-months | \n", "lib1-6.0 | \n", "L4-VIDD3 | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "VIDD3 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0075 | \n", "5.9800 | \n", "second sample collected at Hutch in 3/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53-plus-2-months | \n", "human | \n", "NaN | \n", "lib1, 6.0% infectivity | \n", "
2009-age-53-plus-2-months | \n", "lib3-1.1 | \n", "L6-VIDD3 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "VIDD3 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00625 | \n", "1.1200 | \n", "second sample collected at Hutch in 3/2009 from person born in 1956 | \n", "VIDD_sera | \n", "2009-age-53-plus-2-months | \n", "human | \n", "NaN | \n", "lib3, 1.1% infectivity | \n", "
ferret-Pitt-2-postinf | \n", "lib2-1.9 | \n", "L5-f9435d23 | \n", "Lib5mock-A | \n", "WTplasmid-B | \n", "f9435d23 | \n", "lib2 | \n", "2019-01-16 | \n", "0.000625 | \n", "1.8800 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-2-postinf | \n", "ferret | \n", "post | \n", "lib2, 1.9% infectivity | \n", "
ferret-Pitt-2-postinf | \n", "lib1-3.5 | \n", "L4-f9435d23 | \n", "Lib4mock-B | \n", "WTplasmid-C | \n", "f9435d23 | \n", "lib1 | \n", "2019-01-16 | \n", "0.0025 | \n", "3.4500 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-2-postinf | \n", "ferret | \n", "post | \n", "lib1, 3.5% infectivity | \n", "
ferret-Pitt-2-postinf | \n", "lib3-3.0 | \n", "L6-f9435d23 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "f9435d23 | \n", "lib3 | \n", "2019-03-06 | \n", "0.00125 | \n", "3.0400 | \n", "Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA | \n", "ferret | \n", "Pitt-2-postinf | \n", "ferret | \n", "post | \n", "lib3, 3.0% infectivity | \n", "
2015-age-25-vacc | \n", "lib2-0.81 | \n", "L5-557v2 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "557v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.0005 | \n", "0.8100 | \n", "collected after 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-vacc | \n", "human | \n", "post | \n", "lib2, 0.81% infectivity | \n", "
2015-age-25-vacc | \n", "lib3-1.6 | \n", "L6-557v2 | \n", "Lib6mock-A | \n", "WTplasmid-E | \n", "557v2 | \n", "lib3 | \n", "2019-03-06 | \n", "0.0005 | \n", "1.6400 | \n", "collected after 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-vacc | \n", "human | \n", "post | \n", "lib3, 1.6% infectivity | \n", "
2015-age-25-vacc | \n", "lib1-1.5 | \n", "L4-557v2 | \n", "Lib4mock-C | \n", "WTplasmid-F | \n", "557v2 | \n", "lib1 | \n", "2019-03-06 | \n", "0.00125 | \n", "1.5300 | \n", "collected after 2015/2016 vaccine from person born in 1990 | \n", "Hensley_sera | \n", "2015-age-25-vacc | \n", "human | \n", "post | \n", "lib1, 1.5% infectivity | \n", "
2015-age-29-vacc | \n", "lib2-1.1 | \n", "L5-574v2 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "574v2 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875 | \n", "1.1100 | \n", "collected after 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-vacc | \n", "human | \n", "post | \n", "lib2, 1.1% infectivity | \n", "
2015-age-29-vacc | \n", "lib1-1.5 | \n", "L4-574v2 | \n", "Lib4mock-C | \n", "WTplasmid-F | \n", "574v2 | \n", "lib1 | \n", "2019-03-06 | \n", "0.002 | \n", "1.5400 | \n", "collected after 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-vacc | \n", "human | \n", "post | \n", "lib1, 1.5% infectivity | \n", "
2015-age-29-vacc | \n", "lib3-1.9 | \n", "L6-574v2 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "574v2 | \n", "lib3 | \n", "2019-03-26 | \n", "0.00075 | \n", "1.9200 | \n", "collected after 2015/2016 vaccine from person born in 1986 | \n", "Hensley_sera | \n", "2015-age-29-vacc | \n", "human | \n", "post | \n", "lib3, 1.9% infectivity | \n", "
antibody-4F03 | \n", "lib2-23 | \n", "L5-4F03-c1 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.3 | \n", "22.9900 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib2, 23% infectivity | \n", "
antibody-4F03 | \n", "lib2-3.7 | \n", "L5-4F03-c3 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "1.5 | \n", "3.7100 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib2, 3.7% infectivity | \n", "
antibody-4F03 | \n", "lib2-4.7 | \n", "L5-4F03-c2 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.7 | \n", "4.7100 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib2, 4.7% infectivity | \n", "
antibody-4F03 | \n", "lib1-3.5 | \n", "L4-4F03-c2 | \n", "Lib4mock-C | \n", "WTplasmid-F | \n", "4F03 | \n", "lib1 | \n", "2019-03-06 | \n", "1.0 | \n", "3.4700 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib1, 3.5% infectivity | \n", "
antibody-4F03 | \n", "lib1-0.78 | \n", "L4-4F03-c3 | \n", "Lib4mock-C | \n", "WTplasmid-F | \n", "4F03 | \n", "lib1 | \n", "2019-03-06 | \n", "2.0 | \n", "0.7800 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib1, 0.78% infectivity | \n", "
antibody-4F03 | \n", "lib3-24 | \n", "L6-4F03-c1 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.3 | \n", "23.9100 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib3, 24% infectivity | \n", "
antibody-4F03 | \n", "lib3-0.84 | \n", "L6-4F03-c3 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "1.4 | \n", "0.8400 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib3, 0.84% infectivity | \n", "
antibody-4F03 | \n", "lib3-7.2 | \n", "L6-4F03-c2 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.75 | \n", "7.1600 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib3, 7.2% infectivity | \n", "
antibody-4F03 | \n", "lib1-28 | \n", "L4-4F03-c1 | \n", "Lib4mock-D | \n", "WTplasmid-G | \n", "4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.3 | \n", "28.2400 | \n", "lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley | \n", "antibody_lower_head | \n", "antibody-4F03 | \n", "NaN | \n", "NaN | \n", "lib1, 28% infectivity | \n", "
antibody-5A01 | \n", "lib2-1.4 | \n", "L5-5A01 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "5A01 | \n", "lib2 | \n", "2019-03-06 | \n", "0.025 | \n", "1.3600 | \n", "site B-targeting monoclonal antibody 5A01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-5A01 | \n", "NaN | \n", "NaN | \n", "lib2, 1.4% infectivity | \n", "
antibody-5A01 | \n", "lib1-4.3 | \n", "L4-5A01 | \n", "Lib4mock-C | \n", "WTplasmid-F | \n", "5A01 | \n", "lib1 | \n", "2019-03-06 | \n", "0.07 | \n", "4.3200 | \n", "site B-targeting monoclonal antibody 5A01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-5A01 | \n", "NaN | \n", "NaN | \n", "lib1, 4.3% infectivity | \n", "
antibody-5A01 | \n", "lib3-1.0 | \n", "L6-5A01 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "5A01 | \n", "lib3 | \n", "2019-03-26 | \n", "0.025 | \n", "1.0200 | \n", "site B-targeting monoclonal antibody 5A01 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-5A01 | \n", "NaN | \n", "NaN | \n", "lib3, 1.0% infectivity | \n", "
2009-age-65-with-low-4F03 | \n", "lib2-5.0 | \n", "L5-VIDD5-low4F03 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "VIDD5andlow4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+0.3 | \n", "5.0000 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at low stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-low-4F03 | \n", "human | \n", "NaN | \n", "lib2, 5.0% infectivity | \n", "
2009-age-65-with-low-4F03 | \n", "lib3-0.20 | \n", "L6-VIDD5-low4F03 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "VIDD5andlow4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+0.3 | \n", "0.2040 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at low stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-low-4F03 | \n", "human | \n", "NaN | \n", "lib3, 0.20% infectivity | \n", "
2009-age-65-with-low-4F03 | \n", "lib1-0.030 | \n", "L4-VIDD5-low4F03 | \n", "Lib4mock-D | \n", "WTplasmid-G | \n", "VIDD5andlow4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+0.3 | \n", "0.0300 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at low stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-low-4F03 | \n", "human | \n", "NaN | \n", "lib1, 0.030% infectivity | \n", "
2009-age-65-with-mid-4F03 | \n", "lib2-0.46 | \n", "L5-VIDD5-mid4F03 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "VIDD5andmid4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+0.7 | \n", "0.4600 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at medium stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-mid-4F03 | \n", "human | \n", "NaN | \n", "lib2, 0.46% infectivity | \n", "
2009-age-65-with-mid-4F03 | \n", "lib3-0.0077 | \n", "L6-VIDD5-mid4F03 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "VIDD5andmid4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+0.75 | \n", "0.0077 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at medium stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-mid-4F03 | \n", "human | \n", "NaN | \n", "lib3, 0.0077% infectivity | \n", "
2009-age-65-with-mid-4F03 | \n", "lib1-0.0037 | \n", "L4-VIDD5-mid4F03 | \n", "Lib4mock-D | \n", "WTplasmid-G | \n", "VIDD5andmid4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+1 | \n", "0.0037 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at medium stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-mid-4F03 | \n", "human | \n", "NaN | \n", "lib1, 0.0037% infectivity | \n", "
2009-age-65-with-hi-4F03 | \n", "lib2-0.040 | \n", "L5-VIDD5-hi4F03 | \n", "Lib5mock-B | \n", "WTplasmid-D | \n", "VIDD5andhi4F03 | \n", "lib2 | \n", "2019-03-06 | \n", "0.000875+1.5 | \n", "0.0400 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at high stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "human | \n", "NaN | \n", "lib2, 0.040% infectivity | \n", "
2009-age-65-with-hi-4F03 | \n", "lib3-0.0032 | \n", "L6-VIDD5-hi4F03 | \n", "Lib6mock-B | \n", "WTplasmid-H | \n", "VIDD5andhi4F03 | \n", "lib3 | \n", "2019-03-26 | \n", "0.002+1.4 | \n", "0.0032 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at high stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "human | \n", "NaN | \n", "lib3, 0.0032% infectivity | \n", "
2009-age-65-with-hi-4F03 | \n", "lib1-0.0016 | \n", "L4-VIDD5-hi4F03 | \n", "Lib4mock-D | \n", "WTplasmid-G | \n", "VIDD5andhi4F03 | \n", "lib1 | \n", "2019-03-26 | \n", "0.003375+2 | \n", "0.0016 | \n", "collected at Hutch in 6/2009 from person b1944 with 4F03 at high stringency | \n", "serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "human | \n", "NaN | \n", "lib1, 0.0016% infectivity | \n", "
serum_name_formatted | \n", "name | \n", "sel | \n", "mock | \n", "err | \n", "serum | \n", "library | \n", "date | \n", "serum_dilution | \n", "percent_infectivity | \n", "serum_description | \n", "serum_group | \n", "serum_name | \n", "serum_species | \n", "serum_vaccination | \n", "name_formatted | \n", "site | \n", "wildtype | \n", "mutation | \n", "mutdiffsel | \n", "abs_diffsel | \n", "positive_diffsel | \n", "negative_diffsel | \n", "max_diffsel | \n", "min_diffsel | \n", "isite | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.01 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "167 | \n", "T | \n", "A | \n", "12.307415 | \n", "26.366193 | \n", "24.254047 | \n", "-2.112146 | \n", "12.307415 | \n", "-2.112146 | \n", "182 | \n", "
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.01 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "167 | \n", "T | \n", "Q | \n", "1.227785 | \n", "26.366193 | \n", "24.254047 | \n", "-2.112146 | \n", "12.307415 | \n", "-2.112146 | \n", "182 | \n", "
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.01 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "167 | \n", "T | \n", "G | \n", "1.189062 | \n", "26.366193 | \n", "24.254047 | \n", "-2.112146 | \n", "12.307415 | \n", "-2.112146 | \n", "182 | \n", "
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.01 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "167 | \n", "T | \n", "V | \n", "1.085952 | \n", "26.366193 | \n", "24.254047 | \n", "-2.112146 | \n", "12.307415 | \n", "-2.112146 | \n", "182 | \n", "
antibody-3C06 | \n", "lib2-0.010 | \n", "L2-3C06 | \n", "Lib2mock-mAb | \n", "WTplasmid-mAb-A | \n", "3C06 | \n", "lib2 | \n", "2018-07-20 | \n", "0.55 | \n", "0.01 | \n", "site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley | \n", "antibody_region_B | \n", "antibody-3C06 | \n", "NaN | \n", "NaN | \n", "lib2, 0.010% infectivity | \n", "167 | \n", "T | \n", "W | \n", "0.742358 | \n", "26.366193 | \n", "24.254047 | \n", "-2.112146 | \n", "12.307415 | \n", "-2.112146 | \n", "182 | \n", "
sample | \n", "lib1, 3.7% infectivity | \n", "lib2, 2.0% infectivity | \n", "lib3, 6.2% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 3.7% infectivity | \n", "1.000 | \n", "0.439 | \n", "0.396 | \n", "
lib2, 2.0% infectivity | \n", "0.439 | \n", "1.000 | \n", "0.380 | \n", "
lib3, 6.2% infectivity | \n", "0.396 | \n", "0.380 | \n", "1.000 | \n", "
sample | \n", "lib1, 6.0% infectivity | \n", "lib2, 1.7% infectivity | \n", "lib3, 1.1% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 6.0% infectivity | \n", "1.000 | \n", "0.446 | \n", "0.451 | \n", "
lib2, 1.7% infectivity | \n", "0.446 | \n", "1.000 | \n", "0.434 | \n", "
lib3, 1.1% infectivity | \n", "0.451 | \n", "0.434 | \n", "1.000 | \n", "
sample | \n", "lib1, 11% infectivity | \n", "lib2, 0.87% infectivity | \n", "lib3, 0.26% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 11% infectivity | \n", "1.000 | \n", "0.498 | \n", "0.473 | \n", "
lib2, 0.87% infectivity | \n", "0.498 | \n", "1.000 | \n", "0.438 | \n", "
lib3, 0.26% infectivity | \n", "0.473 | \n", "0.438 | \n", "1.000 | \n", "
sample | \n", "lib1, 1.8% infectivity | \n", "lib2, 5.2% infectivity | \n", "lib3, 5.6% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 1.8% infectivity | \n", "1.000 | \n", "0.491 | \n", "0.356 | \n", "
lib2, 5.2% infectivity | \n", "0.491 | \n", "1.000 | \n", "0.370 | \n", "
lib3, 5.6% infectivity | \n", "0.356 | \n", "0.370 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.0016% infectivity | \n", "lib2, 0.040% infectivity | \n", "lib3, 0.0032% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 0.0016% infectivity | \n", "1.000 | \n", "0.327 | \n", "0.346 | \n", "
lib2, 0.040% infectivity | \n", "0.327 | \n", "1.000 | \n", "0.632 | \n", "
lib3, 0.0032% infectivity | \n", "0.346 | \n", "0.632 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.030% infectivity | \n", "lib2, 5.0% infectivity | \n", "lib3, 0.20% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 0.030% infectivity | \n", "1.000 | \n", "0.409 | \n", "0.381 | \n", "
lib2, 5.0% infectivity | \n", "0.409 | \n", "1.000 | \n", "0.500 | \n", "
lib3, 0.20% infectivity | \n", "0.381 | \n", "0.500 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.0037% infectivity | \n", "lib2, 0.46% infectivity | \n", "lib3, 0.0077% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 0.0037% infectivity | \n", "1.000 | \n", "0.407 | \n", "0.476 | \n", "
lib2, 0.46% infectivity | \n", "0.407 | \n", "1.000 | \n", "0.512 | \n", "
lib3, 0.0077% infectivity | \n", "0.476 | \n", "0.512 | \n", "1.000 | \n", "
sample | \n", "lib1, 4.1% infectivity | \n", "lib2, 6.0% infectivity | \n", "lib3, 3.7% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 4.1% infectivity | \n", "1.000 | \n", "0.518 | \n", "0.539 | \n", "
lib2, 6.0% infectivity | \n", "0.518 | \n", "1.000 | \n", "0.614 | \n", "
lib3, 3.7% infectivity | \n", "0.539 | \n", "0.614 | \n", "1.000 | \n", "
sample | \n", "lib1, 6.9% infectivity | \n", "lib2, 2.3% infectivity | \n", "lib3, 1.6% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 6.9% infectivity | \n", "1.000 | \n", "0.753 | \n", "0.763 | \n", "
lib2, 2.3% infectivity | \n", "0.753 | \n", "1.000 | \n", "0.757 | \n", "
lib3, 1.6% infectivity | \n", "0.763 | \n", "0.757 | \n", "1.000 | \n", "
sample | \n", "lib1, 1.5% infectivity | \n", "lib2, 0.81% infectivity | \n", "lib3, 1.6% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 1.5% infectivity | \n", "1.000 | \n", "0.708 | \n", "0.693 | \n", "
lib2, 0.81% infectivity | \n", "0.708 | \n", "1.000 | \n", "0.747 | \n", "
lib3, 1.6% infectivity | \n", "0.693 | \n", "0.747 | \n", "1.000 | \n", "
sample | \n", "lib1, 9.5% infectivity | \n", "lib2, 7.6% infectivity | \n", "lib3, 3.3% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 9.5% infectivity | \n", "1.000 | \n", "0.356 | \n", "0.385 | \n", "
lib2, 7.6% infectivity | \n", "0.356 | \n", "1.000 | \n", "0.468 | \n", "
lib3, 3.3% infectivity | \n", "0.385 | \n", "0.468 | \n", "1.000 | \n", "
sample | \n", "lib1, 1.5% infectivity | \n", "lib2, 1.1% infectivity | \n", "lib3, 1.9% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 1.5% infectivity | \n", "1.000 | \n", "0.457 | \n", "0.309 | \n", "
lib2, 1.1% infectivity | \n", "0.457 | \n", "1.000 | \n", "0.340 | \n", "
lib3, 1.9% infectivity | \n", "0.309 | \n", "0.340 | \n", "1.000 | \n", "
sample | \n", "lib1, 14% infectivity | \n", "lib2, 20% infectivity | \n", "lib3, 18% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 14% infectivity | \n", "1.000 | \n", "0.320 | \n", "0.345 | \n", "
lib2, 20% infectivity | \n", "0.320 | \n", "1.000 | \n", "0.413 | \n", "
lib3, 18% infectivity | \n", "0.345 | \n", "0.413 | \n", "1.000 | \n", "
sample | \n", "lib1, 4.6% infectivity | \n", "lib2, 4.7% infectivity | \n", "lib3, 4.1% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 4.6% infectivity | \n", "1.000 | \n", "0.578 | \n", "0.668 | \n", "
lib2, 4.7% infectivity | \n", "0.578 | \n", "1.000 | \n", "0.571 | \n", "
lib3, 4.1% infectivity | \n", "0.668 | \n", "0.571 | \n", "1.000 | \n", "
sample | \n", "lib1, 20% infectivity | \n", "lib2, 12% infectivity | \n", "lib3, 28% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 20% infectivity | \n", "1.000 | \n", "0.394 | \n", "0.371 | \n", "
lib2, 12% infectivity | \n", "0.394 | \n", "1.000 | \n", "0.376 | \n", "
lib3, 28% infectivity | \n", "0.371 | \n", "0.376 | \n", "1.000 | \n", "
sample | \n", "lib1, 5.5% infectivity | \n", "lib2, 1.1% infectivity | \n", "lib3, 7.8% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 5.5% infectivity | \n", "1.000 | \n", "0.375 | \n", "0.388 | \n", "
lib2, 1.1% infectivity | \n", "0.375 | \n", "1.000 | \n", "0.449 | \n", "
lib3, 7.8% infectivity | \n", "0.388 | \n", "0.449 | \n", "1.000 | \n", "
sample | \n", "lib2, 10% infectivity | \n", "lib3, 7.9% infectivity | \n", "
---|---|---|
sample | \n", "\n", " | \n", " |
lib2, 10% infectivity | \n", "1.000 | \n", "0.732 | \n", "
lib3, 7.9% infectivity | \n", "0.732 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.078% infectivity | \n", "lib2, 0.033% infectivity | \n", "
---|---|---|
sample | \n", "\n", " | \n", " |
lib1, 0.078% infectivity | \n", "1.000 | \n", "0.647 | \n", "
lib2, 0.033% infectivity | \n", "0.647 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.069% infectivity | \n", "lib2, 0.010% infectivity | \n", "
---|---|---|
sample | \n", "\n", " | \n", " |
lib1, 0.069% infectivity | \n", "1.000 | \n", "0.576 | \n", "
lib2, 0.010% infectivity | \n", "0.576 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.12% infectivity | \n", "lib2, 0.018% infectivity | \n", "
---|---|---|
sample | \n", "\n", " | \n", " |
lib1, 0.12% infectivity | \n", "1.000 | \n", "0.822 | \n", "
lib2, 0.018% infectivity | \n", "0.822 | \n", "1.000 | \n", "
sample | \n", "lib1, 0.78% infectivity | \n", "lib1, 28% infectivity | \n", "lib1, 3.5% infectivity | \n", "lib2, 23% infectivity | \n", "lib2, 3.7% infectivity | \n", "lib2, 4.7% infectivity | \n", "lib3, 0.84% infectivity | \n", "lib3, 24% infectivity | \n", "lib3, 7.2% infectivity | \n", "
---|---|---|---|---|---|---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " |
lib1, 0.78% infectivity | \n", "1.000 | \n", "0.293 | \n", "0.850 | \n", "0.412 | \n", "0.792 | \n", "0.718 | \n", "0.768 | \n", "0.507 | \n", "0.728 | \n", "
lib1, 28% infectivity | \n", "0.293 | \n", "1.000 | \n", "0.395 | \n", "0.357 | \n", "0.368 | \n", "0.370 | \n", "0.326 | \n", "0.379 | \n", "0.388 | \n", "
lib1, 3.5% infectivity | \n", "0.850 | \n", "0.395 | \n", "1.000 | \n", "0.451 | \n", "0.745 | \n", "0.720 | \n", "0.731 | \n", "0.578 | \n", "0.743 | \n", "
lib2, 23% infectivity | \n", "0.412 | \n", "0.357 | \n", "0.451 | \n", "1.000 | \n", "0.576 | \n", "0.630 | \n", "0.459 | \n", "0.533 | \n", "0.506 | \n", "
lib2, 3.7% infectivity | \n", "0.792 | \n", "0.368 | \n", "0.745 | \n", "0.576 | \n", "1.000 | \n", "0.819 | \n", "0.761 | \n", "0.576 | \n", "0.744 | \n", "
lib2, 4.7% infectivity | \n", "0.718 | \n", "0.370 | \n", "0.720 | \n", "0.630 | \n", "0.819 | \n", "1.000 | \n", "0.786 | \n", "0.688 | \n", "0.806 | \n", "
lib3, 0.84% infectivity | \n", "0.768 | \n", "0.326 | \n", "0.731 | \n", "0.459 | \n", "0.761 | \n", "0.786 | \n", "1.000 | \n", "0.687 | \n", "0.846 | \n", "
lib3, 24% infectivity | \n", "0.507 | \n", "0.379 | \n", "0.578 | \n", "0.533 | \n", "0.576 | \n", "0.688 | \n", "0.687 | \n", "1.000 | \n", "0.799 | \n", "
lib3, 7.2% infectivity | \n", "0.728 | \n", "0.388 | \n", "0.743 | \n", "0.506 | \n", "0.744 | \n", "0.806 | \n", "0.846 | \n", "0.799 | \n", "1.000 | \n", "
sample | \n", "lib1, 4.3% infectivity | \n", "lib2, 1.4% infectivity | \n", "lib3, 1.0% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 4.3% infectivity | \n", "1.000 | \n", "0.762 | \n", "0.705 | \n", "
lib2, 1.4% infectivity | \n", "0.762 | \n", "1.000 | \n", "0.717 | \n", "
lib3, 1.0% infectivity | \n", "0.705 | \n", "0.717 | \n", "1.000 | \n", "
sample | \n", "lib1, 4.4% infectivity | \n", "lib2, 5.3% infectivity | \n", "lib3, 1.7% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 4.4% infectivity | \n", "1.000 | \n", "0.517 | \n", "0.58 | \n", "
lib2, 5.3% infectivity | \n", "0.517 | \n", "1.000 | \n", "0.58 | \n", "
lib3, 1.7% infectivity | \n", "0.580 | \n", "0.580 | \n", "1.00 | \n", "
sample | \n", "lib1, 100% infectivity | \n", "lib2, 100% infectivity | \n", "lib3, 100% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 100% infectivity | \n", "1.000 | \n", "0.248 | \n", "0.327 | \n", "
lib2, 100% infectivity | \n", "0.248 | \n", "1.000 | \n", "0.231 | \n", "
lib3, 100% infectivity | \n", "0.327 | \n", "0.231 | \n", "1.000 | \n", "
sample | \n", "lib1, 3.5% infectivity | \n", "lib2, 1.9% infectivity | \n", "lib3, 3.0% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 3.5% infectivity | \n", "1.000 | \n", "0.487 | \n", "0.551 | \n", "
lib2, 1.9% infectivity | \n", "0.487 | \n", "1.000 | \n", "0.509 | \n", "
lib3, 3.0% infectivity | \n", "0.551 | \n", "0.509 | \n", "1.000 | \n", "
sample | \n", "lib1, 100% infectivity | \n", "lib2, 100% infectivity | \n", "lib3, 100% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 100% infectivity | \n", "1.00 | \n", "0.260 | \n", "0.270 | \n", "
lib2, 100% infectivity | \n", "0.26 | \n", "1.000 | \n", "0.328 | \n", "
lib3, 100% infectivity | \n", "0.27 | \n", "0.328 | \n", "1.000 | \n", "
sample | \n", "lib1, 8.8% infectivity | \n", "lib2, 1.7% infectivity | \n", "lib3, 5.8% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 8.8% infectivity | \n", "1.000 | \n", "0.589 | \n", "0.563 | \n", "
lib2, 1.7% infectivity | \n", "0.589 | \n", "1.000 | \n", "0.629 | \n", "
lib3, 5.8% infectivity | \n", "0.563 | \n", "0.629 | \n", "1.000 | \n", "
sample | \n", "lib1, 100% infectivity | \n", "lib2, 100% infectivity | \n", "lib3, 100% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 100% infectivity | \n", "1.000 | \n", "0.286 | \n", "0.346 | \n", "
lib2, 100% infectivity | \n", "0.286 | \n", "1.000 | \n", "0.336 | \n", "
lib3, 100% infectivity | \n", "0.346 | \n", "0.336 | \n", "1.000 | \n", "
sample | \n", "lib1, 2.3% infectivity | \n", "lib2, 1.9% infectivity | \n", "lib3, 4.1% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 2.3% infectivity | \n", "1.000 | \n", "0.502 | \n", "0.534 | \n", "
lib2, 1.9% infectivity | \n", "0.502 | \n", "1.000 | \n", "0.449 | \n", "
lib3, 4.1% infectivity | \n", "0.534 | \n", "0.449 | \n", "1.000 | \n", "
sample | \n", "lib1, 1.3% infectivity | \n", "lib2, 3.9% infectivity | \n", "lib3, 3.6% infectivity | \n", "
---|---|---|---|
sample | \n", "\n", " | \n", " | \n", " |
lib1, 1.3% infectivity | \n", "1.000 | \n", "0.600 | \n", "0.618 | \n", "
lib2, 3.9% infectivity | \n", "0.600 | \n", "1.000 | \n", "0.631 | \n", "
lib3, 3.6% infectivity | \n", "0.618 | \n", "0.631 | \n", "1.000 | \n", "
\n", " | library | \n", "lib1 | \n", "lib2 | \n", "lib3 | \n", "
---|---|---|---|---|
serum_group | \n", "serum_name_formatted | \n", "\n", " | \n", " | \n", " |
Hensley_sera | \n", "2015-age-25-prevacc | \n", "6.9000 | \n", "2.3100 | \n", "1.5700 | \n", "
2015-age-25-vacc | \n", "1.5300 | \n", "0.8100 | \n", "1.6400 | \n", "|
2015-age-29-prevacc | \n", "9.4800 | \n", "7.5700 | \n", "3.3000 | \n", "|
2015-age-29-vacc | \n", "1.5400 | \n", "1.1100 | \n", "1.9200 | \n", "|
2015-age-48-prevacc | \n", "13.8200 | \n", "20.3200 | \n", "18.4000 | \n", "|
2015-age-48-vacc | \n", "4.5800 | \n", "4.6800 | \n", "4.0600 | \n", "|
2015-age-49-prevacc | \n", "19.6200 | \n", "11.8600 | \n", "27.7400 | \n", "|
2015-age-49-vacc | \n", "5.4800 | \n", "1.0900 | \n", "7.7900 | \n", "|
VIDD_sera | \n", "2009-age-53 | \n", "3.7400 | \n", "2.0300 | \n", "6.2200 | \n", "
2009-age-53-plus-2-months | \n", "5.9800 | \n", "1.7300 | \n", "1.1200 | \n", "|
2009-age-64 | \n", "10.7400 | \n", "0.8700 | \n", "0.2600 | \n", "|
2009-age-65 | \n", "1.7700 | \n", "5.2400 | \n", "5.5800 | \n", "|
2010-age-21 | \n", "4.0800 | \n", "5.9500 | \n", "3.6800 | \n", "|
antibody_lower_head | \n", "antibody-1C04 | \n", "NaN | \n", "10.3190 | \n", "7.9040 | \n", "
antibody-4F03 | \n", "3.4700 | \n", "3.7100 | \n", "0.8400 | \n", "|
antibody_region_B | \n", "antibody-3C04 | \n", "0.0777 | \n", "0.0331 | \n", "NaN | \n", "
antibody-3C06 | \n", "0.0688 | \n", "0.0100 | \n", "NaN | \n", "|
antibody-4C01 | \n", "0.1190 | \n", "0.0185 | \n", "NaN | \n", "|
antibody-5A01 | \n", "4.3200 | \n", "1.3600 | \n", "1.0200 | \n", "|
ferret | \n", "ferret-Pitt-1-postinf | \n", "4.3600 | \n", "5.3500 | \n", "1.6900 | \n", "
ferret-Pitt-1-preinf | \n", "100.0000 | \n", "100.0000 | \n", "100.0000 | \n", "|
ferret-Pitt-2-postinf | \n", "3.4500 | \n", "1.8800 | \n", "3.0400 | \n", "|
ferret-Pitt-2-preinf | \n", "100.0000 | \n", "100.0000 | \n", "100.0000 | \n", "|
ferret-Pitt-3-postinf | \n", "8.7700 | \n", "1.7000 | \n", "5.7800 | \n", "|
ferret-Pitt-3-preinf | \n", "100.0000 | \n", "100.0000 | \n", "100.0000 | \n", "|
ferret-WHO-Perth2009 | \n", "2.3200 | \n", "1.8800 | \n", "4.1000 | \n", "|
ferret-WHO-Victoria2011 | \n", "1.2600 | \n", "3.9000 | \n", "3.6200 | \n", "|
serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "0.0016 | \n", "0.0400 | \n", "0.0032 | \n", "
2009-age-65-with-low-4F03 | \n", "0.0300 | \n", "5.0000 | \n", "0.2040 | \n", "|
2009-age-65-with-mid-4F03 | \n", "0.0037 | \n", "0.4600 | \n", "0.0077 | \n", "
\n", " | library | \n", "lib1 | \n", "lib2 | \n", "lib3 | \n", "
---|---|---|---|---|
serum_group | \n", "serum_name_formatted | \n", "\n", " | \n", " | \n", " |
Hensley_sera | \n", "2015-age-25-prevacc | \n", "0.0075 | \n", "0.005 | \n", "0.005 | \n", "
2015-age-25-vacc | \n", "0.00125 | \n", "0.0005 | \n", "0.0005 | \n", "|
2015-age-29-prevacc | \n", "0.0185 | \n", "0.0125 | \n", "0.015 | \n", "|
2015-age-29-vacc | \n", "0.002 | \n", "0.000875 | \n", "0.00075 | \n", "|
2015-age-48-prevacc | \n", "0.0185 | \n", "0.0175 | \n", "0.0175 | \n", "|
2015-age-48-vacc | \n", "0.000875 | \n", "0.000375 | \n", "0.000375 | \n", "|
2015-age-49-prevacc | \n", "0.0185 | \n", "0.0185 | \n", "0.0185 | \n", "|
2015-age-49-vacc | \n", "0.0185 | \n", "0.01 | \n", "0.005 | \n", "|
VIDD_sera | \n", "2009-age-53 | \n", "0.00875 | \n", "0.00375 | \n", "0.00375 | \n", "
2009-age-53-plus-2-months | \n", "0.0075 | \n", "0.0045 | \n", "0.00625 | \n", "|
2009-age-64 | \n", "0.004 | \n", "0.001675 | \n", "0.00375 | \n", "|
2009-age-65 | \n", "0.003375 | \n", "0.000875 | \n", "0.002 | \n", "|
2010-age-21 | \n", "0.0175 | \n", "0.0045 | \n", "0.0075 | \n", "|
antibody_lower_head | \n", "antibody-1C04 | \n", "NaN | \n", "16.0 | \n", "18.0 | \n", "
antibody-4F03 | \n", "1.0 | \n", "1.5 | \n", "1.4 | \n", "|
antibody_region_B | \n", "antibody-3C04 | \n", "0.1 | \n", "0.65 | \n", "NaN | \n", "
antibody-3C06 | \n", "0.1 | \n", "0.55 | \n", "NaN | \n", "|
antibody-4C01 | \n", "0.2 | \n", "0.60 | \n", "NaN | \n", "|
antibody-5A01 | \n", "0.07 | \n", "0.025 | \n", "0.025 | \n", "|
ferret | \n", "ferret-Pitt-1-postinf | \n", "0.00075 | \n", "0.000175 | \n", "0.000375 | \n", "
ferret-Pitt-1-preinf | \n", "0.00075 | \n", "0.00075 | \n", "0.00075 | \n", "|
ferret-Pitt-2-postinf | \n", "0.0025 | \n", "0.000625 | \n", "0.00125 | \n", "|
ferret-Pitt-2-preinf | \n", "0.001 | \n", "0.0025 | \n", "0.0025 | \n", "|
ferret-Pitt-3-postinf | \n", "0.00225 | \n", "0.001375 | \n", "0.00175 | \n", "|
ferret-Pitt-3-preinf | \n", "0.00225 | \n", "0.00625 | \n", "0.00625 | \n", "|
ferret-WHO-Perth2009 | \n", "0.0185 | \n", "0.0075 | \n", "0.0075 | \n", "|
ferret-WHO-Victoria2011 | \n", "0.00625 | \n", "0.0025 | \n", "0.0025 | \n", "|
serum_mAb_spike | \n", "2009-age-65-with-hi-4F03 | \n", "0.003375+2 | \n", "0.000875+1.5 | \n", "0.002+1.4 | \n", "
2009-age-65-with-low-4F03 | \n", "0.003375+0.3 | \n", "0.000875+0.3 | \n", "0.002+0.3 | \n", "|
2009-age-65-with-mid-4F03 | \n", "0.003375+1 | \n", "0.000875+0.7 | \n", "0.002+0.75 | \n", "
serum_group | \n", "serum_name_formatted | \n", "isite | \n", "site | \n", "positive_diffsel | \n", "sig | \n", "
---|---|---|---|---|---|
Hensley_sera | \n", "2015-age-25-vacc | \n", "160 | \n", "145 | \n", "14.630931 | \n", "True | \n", "
Hensley_sera | \n", "2015-age-25-vacc | \n", "174 | \n", "159 | \n", "26.089489 | \n", "True | \n", "
Hensley_sera | \n", "2015-age-25-vacc | \n", "175 | \n", "160 | \n", "6.151038 | \n", "True | \n", "
Hensley_sera | \n", "2015-age-25-vacc | \n", "176 | \n", "161 | \n", "5.219629 | \n", "True | \n", "
\n", " | significant sites | \n", "number of sites | \n", "
---|---|---|
serum_name_formatted | \n", "\n", " | \n", " |
antibody-5A01 | \n", "157, 158, 159, 160, 193, 222, 227, 244 | \n", "8 | \n", "
antibody-3C04 | \n", "159, 160, 192, 193 | \n", "4 | \n", "
antibody-3C06 | \n", "137, 145, 159, 160, 167, 193, 207, 244, 246 | \n", "9 | \n", "
antibody-4C01 | \n", "193 | \n", "1 | \n", "
antibody-4F03 | \n", "80, 81, 83, 121, 122, 220, 244, 259, (HA2)78 | \n", "9 | \n", "
antibody-1C04 | \n", "53, 54, 57, 82, 83, 188, 210, 220, 244, (HA2)61 | \n", "10 | \n", "
ferret-Pitt-1-preinf | \n", "\n", " | 0 | \n", "
ferret-Pitt-1-postinf | \n", "189, 193, 222 | \n", "3 | \n", "
ferret-Pitt-2-preinf | \n", "\n", " | 0 | \n", "
ferret-Pitt-2-postinf | \n", "142, 144, 189, 193, 222 | \n", "5 | \n", "
ferret-Pitt-3-preinf | \n", "\n", " | 0 | \n", "
ferret-Pitt-3-postinf | \n", "189, 193 | \n", "2 | \n", "
ferret-WHO-Perth2009 | \n", "50, 189, 193 | \n", "3 | \n", "
ferret-WHO-Victoria2011 | \n", "50, 159, 189, 193, 222, 275 | \n", "6 | \n", "
2010-age-21 | \n", "144, 159, 193, 222 | \n", "4 | \n", "
2009-age-53 | \n", "157, 160 | \n", "2 | \n", "
2009-age-53-plus-2-months | \n", "157, 160, 244 | \n", "3 | \n", "
2009-age-64 | \n", "159, 222, 244 | \n", "3 | \n", "
2009-age-65 | \n", "159, 160, 193 | \n", "3 | \n", "
2015-age-25-prevacc | \n", "\n", " | 0 | \n", "
2015-age-25-vacc | \n", "145, 159, 160, 161, 192, 193, 207, 220, 222, 224, 225, 244 | \n", "12 | \n", "
2015-age-29-prevacc | \n", "\n", " | 0 | \n", "
2015-age-29-vacc | \n", "144, 145, 159, 160, 222, 227 | \n", "6 | \n", "
2015-age-48-prevacc | \n", "\n", " | 0 | \n", "
2015-age-48-vacc | \n", "189 | \n", "1 | \n", "
2015-age-49-prevacc | \n", "\n", " | 0 | \n", "
2015-age-49-vacc | \n", "\n", " | 0 | \n", "
2009-age-65-with-low-4F03 | \n", "80, 121, 159, 160, 193, 244 | \n", "6 | \n", "
2009-age-65-with-mid-4F03 | \n", "121 | \n", "1 | \n", "
2009-age-65-with-hi-4F03 | \n", "\n", " | 0 | \n", "
\n", " | isite | \n", "site | \n", "nsites | \n", "
---|---|---|---|
serum_group | \n", "\n", " | \n", " | \n", " |
serum_mAb_spike | \n", "[95, 136, 174, 175, 208, 259] | \n", "[80, 121, 159, 160, 193, 244] | \n", "6 | \n", "
VIDD_sera | \n", "[159, 172, 174, 175, 208, 237, 259] | \n", "[144, 157, 159, 160, 193, 222, 244] | \n", "7 | \n", "
ferret | \n", "[65, 157, 159, 174, 204, 208, 237, 290] | \n", "[50, 142, 144, 159, 189, 193, 222, 275] | \n", "8 | \n", "
antibody_region_B | \n", "[152, 160, 172, 173, 174, 175, 182, 207, 208, 222, 237, 242, 259, 261] | \n", "[137, 145, 157, 158, 159, 160, 167, 192, 193, 207, 222, 227, 244, 246] | \n", "14 | \n", "
Hensley_sera | \n", "[159, 160, 174, 175, 176, 204, 207, 208, 222, 235, 237, 239, 240, 242, 259] | \n", "[144, 145, 159, 160, 161, 189, 192, 193, 207, 220, 222, 224, 225, 227, 244] | \n", "15 | \n", "
antibody_lower_head | \n", "[68, 69, 72, 95, 96, 97, 98, 136, 137, 203, 225, 235, 259, 274, 405, 422] | \n", "[53, 54, 57, 80, 81, 82, 83, 121, 122, 188, 210, 220, 244, 259, (HA2)61, (HA2)78] | \n", "16 | \n", "
\n", " | isite | \n", "site | \n", "nsites | \n", "
---|---|---|---|
Hensley_sera | \n", "[159, 160, 174, 175, 176, 204, 207, 208, 222, 235, 237, 239, 240, 242, 259] | \n", "[144, 145, 159, 160, 161, 189, 192, 193, 207, 220, 222, 224, 225, 227, 244] | \n", "15 | \n", "
VIDD_sera | \n", "[159, 172, 174, 175, 208, 237, 259] | \n", "[144, 157, 159, 160, 193, 222, 244] | \n", "7 | \n", "
antibody_lower_head | \n", "[68, 69, 72, 95, 96, 97, 98, 136, 137, 203, 225, 235, 259, 274, 405, 422] | \n", "[53, 54, 57, 80, 81, 82, 83, 121, 122, 188, 210, 220, 244, 259, (HA2)61, (HA2)78] | \n", "16 | \n", "
antibody_region_B | \n", "[152, 160, 172, 173, 174, 175, 182, 207, 208, 222, 237, 242, 259, 261] | \n", "[137, 145, 157, 158, 159, 160, 167, 192, 193, 207, 222, 227, 244, 246] | \n", "14 | \n", "
ferret | \n", "[65, 157, 159, 174, 204, 208, 237, 290] | \n", "[50, 142, 144, 159, 189, 193, 222, 275] | \n", "8 | \n", "
serum_mAb_spike | \n", "[95, 136, 174, 175, 208, 259] | \n", "[80, 121, 159, 160, 193, 244] | \n", "6 | \n", "
lib_A | \n", "lib_B | \n", "correlation | \n", "serum_name | \n", "corr_str | \n", "
---|---|---|---|---|
lib1 | \n", "lib1 | \n", "1.000000 | \n", "antibody-5A01 | \n", "1.00 | \n", "
lib1 | \n", "lib2 | \n", "0.762430 | \n", "antibody-5A01 | \n", "0.76 | \n", "
lib2 | \n", "lib2 | \n", "1.000000 | \n", "antibody-5A01 | \n", "1.00 | \n", "
lib1 | \n", "lib3 | \n", "0.705409 | \n", "antibody-5A01 | \n", "0.71 | \n", "
lib2 | \n", "lib3 | \n", "0.717227 | \n", "antibody-5A01 | \n", "0.72 | \n", "