---
title: "R Markdown Recitation Solutions"
author: "Jessica Cooperstone"
output: 
  html_document:
    toc: true
    toc_float: true
    number_sections: true
    theme: lumen
    code_download: true
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

## R Markdown Recitation

This will be your template RMarkdown document for playing around with RMarkdown. This was opened using the default Rmd settings. You are going to be playing around with the 3 components of an Rmd:

1.  text
2.  code
3.  the YAML (aka the header)

To see if each of your changes has worked, you will need to knit.

# Text

Write text that generates in italics. *This text is in italics*

Write text that generates in bold **This text is in bold**

Try playing around with header levels

# Biggest header

## Second biggest header

### Third biggest header

### Four biggest header

You get the idea.

Add a hyperlink to [our class website](https://datavisualizing.netlify.app/)

Add an image. Note you will do this differently if you are adding an image from internet vs one you have on your local machine. Also remember your working directory is the location of your Rmd and you may want to have a directory called `img` where images are stored.

![This is my dog Nacho](https://www.cooperstonelab.com/people/current-team/nacho/featured.jpeg)

Add a block quote

> Here is an important block quote

Make a bulleted list

-   Thing 1

-   Thing 2

-   Thing 3

-   This also works

-   To make

-   A bulleted list

1.  You can also
2.  Make
3.  Numbered lists

# Code

Create a code chunk by typing

```{r}

```

Create a code chunk using the toolbar

```{r}

```

Create a code chunk using the keyboard shortcut

```{r}

```

Write some code within a chunk and execute it

```{r}
getwd()
```

Write some code in line (within your text) and knit

Is it `r weekdays(as.POSIXlt("2022-09-09"))` yet?

Try using the different options for your code chunks. Remember you can use multiple at once.

Get code to run but not display

```{r include = FALSE}
my_vector <- c(1:10)
```

(See it did actually run as it shows up here.)

```{r}
my_vector
```

Get code to display but not run

```{r eval = FALSE}
install.packages("tidyverse")
```

Get code to hide messages

```{r message = FALSE}
library(tidyverse) 
```

Note, this still displays "warnings" which are different from messages. You can hide warnings too but do so with care.

```{r message = FALSE, warning = FALSE}
library(tidyverse)
```

Add a figure caption

```{r cars, fig.cap = "Here is my plot about cars"}
plot(cars)
```

Add alt text

```{r cars2, fig.alt= "A scatterplot showing the relationship between speed and distance of cars. The two are strongly positively correlated, meaning cars moving at a faster speed go a further distance (I think)."}
plot(cars)
```

Give your chunk a name

```{r how-many-cars}
dim(cars)
```

# The YAML

Edit the default components of the YAML to be personalized to you

Play around with adding a:

-   Table of contents
-   Code download button
-   Code folding

You can learn more about setting other arguments in your YAML [here](https://bookdown.org/yihui/rmarkdown/html-document.html).

Play around with the default themes: you can find a gallery of the themes [here](https://www.datadreaming.org/posts/2018-04-11-r-markdown-theme-gallery/2018-04-11-r-markdown-theme-gallery). This site shows you some examples of themes from the packages `prettydoc`, `rmdformats` and/or `tufte`. Before you can use those themes, you need to download them, which you can do using the code below:

```{r, eval = FALSE}
install.packages("prettydoc")
install.packages("rmdformats")
install.packages("tufte")
```

You can see some other examples of using themes [here](https://rpubs.com/ranydc/rmarkdown_themes).

Here are some example YAMLs. I put it in a code chunk so it renders if you knit this file, but you want to copy just the part between the `---` and `---`.

```{r lumen-yaml, eval = FALSE}
---
title: "R Markdown Recitation Solutions"
author: "Jessica Cooperstone"
output: 
  html_document:
    toc: true # have a TOC
    toc_float: true # make TOC float
    number_sections: true # number the sections
    theme: lumen # use the theme "lumen"
    code_download: true # add a code download button
    code_folding: hide # code folded by default
---
```

You can learn more about `prettydoc` [here](https://prettydoc.statr.me/themes.html).
```{r prettydoc-architect, eval = FALSE}
---
title: "Your Document Title"
author: "Document Author"
date: "`r Sys.Date()`"
output:
  prettydoc::html_pretty:
    theme: architect
    highlight: github
---
```


```{r rmdformats-readthedown, eval = FALSE}
---
title: "This is a readthedown Themes YAML from `rmdformats` Package"
author: "Type your name here"
date: "`r Sys.Date()`"
output: 
  rmdformats::readthedown
---
```

# Other stuff

Play around with the visual editor.